Your job contains 1 sequence.
>002135
MNKSRGDNSSCLCPVWLKKIVEAFAFVSIFSAHLQLRREKVILSHVKGALNQLEKFGVRV
GIEDIENLAVLCPKVVQFANDDMESKNHDDSIVIINVSTEERDKVEDNLGSGQKAISLSK
IFNAMKKRERSFKTNLWEAVNLLMCKLQKRVMSLSVEDLLTYVKERRTDVRGNEVKRARR
SQSSTSSSHSFQRRCSDKSQLLPLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDAL
LDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLS
SSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPD
MLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTAL
ILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLW
NPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCEL
VLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVG
HIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIEC
CHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSA
KIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGH
TYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALA
CTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGL
HAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDMKM
N
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 002135
(961 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ASPGD|ASPL0000001605 - symbol:AN10757 species:162425 "Eme... 848 1.3e-116 3
TIGR_CMR|DET_0967 - symbol:DET_0967 "ATP-dependent RNA he... 841 2.0e-115 2
SGD|S000002699 - symbol:HRQ1 "3'-5'DNA helicase that has ... 779 7.4e-103 2
POMBASE|SPAC23A1.19c - symbol:hrq1 "RecQ type DNA helicas... 769 3.1e-102 3
CGD|CAL0003767 - symbol:orf19.7213 species:5476 "Candida ... 882 2.5e-88 1
UNIPROTKB|Q59ZX8 - symbol:CaO19.7213 "Putative uncharacte... 882 2.5e-88 1
UNIPROTKB|O06359 - symbol:Rv3649 "PROBABLE HELICASE" spec... 625 3.8e-84 2
DICTYBASE|DDB_G0268288 - symbol:DDB_G0268288 "Putative AT... 371 1.3e-28 2
UNIPROTKB|A5D786 - symbol:RECQL4 "RECQL4 protein" species... 156 1.6e-10 2
UNIPROTKB|Q81QF0 - symbol:BAS2301 "ATP-dependent RNA heli... 132 6.4e-09 2
TIGR_CMR|BA_2475 - symbol:BA_2475 "ATP-dependent RNA heli... 132 6.4e-09 2
UNIPROTKB|I3LFW3 - symbol:RECQL5 "Uncharacterized protein... 126 5.1e-08 2
UNIPROTKB|Q8EGU0 - symbol:SO_1501 "ATP-dependent RNA heli... 104 1.0e-07 2
TIGR_CMR|SO_1501 - symbol:SO_1501 "ATP-dependent RNA heli... 104 1.0e-07 2
UNIPROTKB|Q47WD5 - symbol:CPS_4237 "RecQ domain protein" ... 140 1.1e-07 2
TIGR_CMR|CPS_4237 - symbol:CPS_4237 "RecQ domain protein"... 140 1.1e-07 2
TIGR_CMR|BA_1505 - symbol:BA_1505 "ATP-dependent DNA heli... 133 1.1e-07 3
UNIPROTKB|O94761 - symbol:RECQL4 "ATP-dependent DNA helic... 135 1.3e-07 2
ASPGD|ASPL0000045206 - symbol:musN species:162425 "Emeric... 127 1.5e-07 2
UNIPROTKB|Q9KVF0 - symbol:VC_0196 "ATP-dependent DNA heli... 120 2.0e-07 2
TIGR_CMR|VC_0196 - symbol:VC_0196 "ATP-dependent DNA heli... 120 2.0e-07 2
TAIR|locus:2127998 - symbol:RecQl3 "AT4G35740" species:37... 125 2.8e-07 4
UNIPROTKB|F1RSP7 - symbol:RECQL4 "Uncharacterized protein... 143 3.1e-07 3
UNIPROTKB|K7GSZ9 - symbol:RECQL4 "Uncharacterized protein... 143 3.2e-07 3
UNIPROTKB|F1RV44 - symbol:RECQL4 "Uncharacterized protein... 143 3.3e-07 3
POMBASE|SPAC2G11.12 - symbol:rqh1 "RecQ type DNA helicase... 133 5.9e-07 3
FB|FBgn0002906 - symbol:Blm "Bloom syndrome helicase orth... 136 1.7e-06 3
UNIPROTKB|J3KTQ2 - symbol:RECQL5 "ATP-dependent DNA helic... 118 1.7e-06 2
TAIR|locus:2029799 - symbol:AT1G27880 species:3702 "Arabi... 126 1.8e-06 3
TAIR|locus:2127043 - symbol:RH8 "RNAhelicase-like 8" spec... 100 1.9e-06 2
WB|WBGene00001865 - symbol:him-6 species:6239 "Caenorhabd... 117 2.0e-06 2
TIGR_CMR|CPS_1418 - symbol:CPS_1418 "ATP-dependent RNA he... 110 2.8e-06 2
WB|WBGene00000479 - symbol:cgh-1 species:6239 "Caenorhabd... 107 2.8e-06 2
UNIPROTKB|Q95YF3 - symbol:cgh-1 "ATP-dependent RNA helica... 107 2.8e-06 2
MGI|MGI:1931028 - symbol:Recql4 "RecQ protein-like 4" spe... 130 2.9e-06 3
UNIPROTKB|Q8EEK1 - symbol:SO_2380 "ATP-dependent DNA heli... 120 3.0e-06 2
TIGR_CMR|SO_2380 - symbol:SO_2380 "RecQ domain protein" s... 120 3.0e-06 2
TAIR|locus:2050715 - symbol:AT2G45810 species:3702 "Arabi... 106 3.2e-06 2
UNIPROTKB|Q81JK1 - symbol:BAS5307 "ATP-dependent RNA heli... 100 3.3e-06 2
TIGR_CMR|BA_5703 - symbol:BA_5703 "ATP-dependent RNA heli... 100 3.3e-06 2
UNIPROTKB|F1NT69 - symbol:F1NT69 "Uncharacterized protein... 115 3.7e-06 2
RGD|1310823 - symbol:Recql5 "RecQ protein-like 5" species... 120 3.9e-06 2
TAIR|locus:2180255 - symbol:RECQSIM "RECQ helicase SIM" s... 105 5.2e-06 2
TAIR|locus:2098886 - symbol:AT3G61240 species:3702 "Arabi... 102 5.7e-06 2
FB|FBgn0040290 - symbol:RecQ4 "RecQ4" species:7227 "Droso... 107 6.3e-06 3
RGD|1307732 - symbol:Recql4 "RecQ protein-like 4" species... 133 6.9e-06 3
UNIPROTKB|P96901 - symbol:lhr "PROBABLE ATP-DEPENDENT HEL... 146 7.2e-06 1
UNIPROTKB|A4R715 - symbol:DHH1 "ATP-dependent RNA helicas... 95 7.4e-06 2
TIGR_CMR|BA_2818 - symbol:BA_2818 "ATP-dependent DNA heli... 116 7.6e-06 2
UNIPROTKB|Q33DM4 - symbol:recql4 "RecQ4 protein" species:... 112 8.2e-06 3
UNIPROTKB|Q87XN5 - symbol:PSPTO_4141 "Helicase domain pro... 128 8.4e-06 2
UNIPROTKB|E1BKM5 - symbol:RECQL5 "Uncharacterized protein... 114 8.5e-06 2
TAIR|locus:2197555 - symbol:RECQL2 "RECQ helicase L2" spe... 98 8.8e-06 2
ASPGD|ASPL0000036135 - symbol:AN10417 species:162425 "Eme... 95 9.8e-06 2
UNIPROTKB|E2RPT4 - symbol:DDX50 "Uncharacterized protein"... 105 9.9e-06 2
TIGR_CMR|SO_1383 - symbol:SO_1383 "ATP-dependent RNA heli... 97 1.1e-05 2
UNIPROTKB|O94762 - symbol:RECQL5 "ATP-dependent DNA helic... 118 1.1e-05 2
UNIPROTKB|F1SUG8 - symbol:DDX50 "Uncharacterized protein"... 105 1.2e-05 2
UNIPROTKB|E2QTT0 - symbol:DDX50 "Uncharacterized protein"... 105 1.2e-05 2
UNIPROTKB|Q4K580 - symbol:lhr "Putative ATP-dependent hel... 131 1.4e-05 4
MGI|MGI:2182303 - symbol:Ddx50 "DEAD (Asp-Glu-Ala-Asp) bo... 106 1.5e-05 2
UNIPROTKB|P15043 - symbol:recQ species:83333 "Escherichia... 106 1.5e-05 2
UNIPROTKB|F1PAG8 - symbol:RECQL5 "Uncharacterized protein... 116 1.7e-05 2
SGD|S000003220 - symbol:HFM1 "Meiosis specific DNA helica... 100 2.1e-05 3
MGI|MGI:104976 - symbol:Ddx6 "DEAD (Asp-Glu-Ala-Asp) box ... 94 2.3e-05 2
RGD|1564560 - symbol:Ddx6 "DEAD (Asp-Glu-Ala-Asp) box hel... 94 2.3e-05 2
UNIPROTKB|F1MMK3 - symbol:DDX50 "Uncharacterized protein"... 105 2.4e-05 2
UNIPROTKB|Q9BQ39 - symbol:DDX50 "ATP-dependent RNA helica... 105 2.4e-05 2
UNIPROTKB|Q9KLH6 - symbol:VC_A0768 "ATP-dependent RNA hel... 93 2.6e-05 2
TIGR_CMR|VC_A0768 - symbol:VC_A0768 "ATP-dependent RNA he... 93 2.6e-05 2
ZFIN|ZDB-GENE-030131-6611 - symbol:wu:fk48d07 "wu:fk48d07... 96 2.9e-05 2
UNIPROTKB|P54824 - symbol:ddx6 "ATP-dependent RNA helicas... 93 3.0e-05 2
UNIPROTKB|F1NWK5 - symbol:F1NWK5 "Uncharacterized protein... 115 3.0e-05 2
CGD|CAL0004296 - symbol:SGS1 species:5476 "Candida albica... 112 3.0e-05 4
UNIPROTKB|Q5A5R4 - symbol:SGS1 "Putative uncharacterized ... 112 3.0e-05 4
WB|WBGene00006944 - symbol:wrn-1 species:6239 "Caenorhabd... 127 3.7e-05 2
WB|WBGene00021277 - symbol:Y23H5B.6 species:6239 "Caenorh... 104 3.8e-05 2
TIGR_CMR|SPO_0107 - symbol:SPO_0107 "ATP-dependent DNA he... 113 4.7e-05 2
UNIPROTKB|E1C8R1 - symbol:DDX6 "Probable ATP-dependent RN... 91 4.9e-05 2
UNIPROTKB|Q5ZKB9 - symbol:DDX6 "Probable ATP-dependent RN... 91 4.9e-05 2
UNIPROTKB|E1BDM8 - symbol:DDX6 "Uncharacterized protein" ... 91 4.9e-05 2
UNIPROTKB|E2RR01 - symbol:DDX6 "Uncharacterized protein" ... 91 4.9e-05 2
UNIPROTKB|P26196 - symbol:DDX6 "Probable ATP-dependent RN... 91 4.9e-05 2
UNIPROTKB|F1SAJ5 - symbol:DDX6 "Uncharacterized protein" ... 91 4.9e-05 2
UNIPROTKB|Q4JNX8 - symbol:RTS "RECQL4-helicase-like prote... 112 5.1e-05 3
CGD|CAL0006152 - symbol:DHH1 species:5476 "Candida albica... 97 6.4e-05 2
UNIPROTKB|Q5AAW3 - symbol:DHH1 "ATP-dependent RNA helicas... 97 6.4e-05 2
UNIPROTKB|Q8ECL2 - symbol:SO_3125 "ATP-dependent RNA heli... 93 7.0e-05 2
TIGR_CMR|SO_3125 - symbol:SO_3125 "ATP-dependent RNA heli... 93 7.0e-05 2
GENEDB_PFALCIPARUM|PFC0915w - symbol:PFC0915w "ATP-depend... 91 7.4e-05 2
UNIPROTKB|F1PNP1 - symbol:RECQL "Uncharacterized protein"... 98 7.5e-05 2
WB|WBGene00019334 - symbol:K02F3.12 species:6239 "Caenorh... 106 8.4e-05 2
FB|FBgn0004419 - symbol:me31B "maternal expression at 31B... 90 8.8e-05 2
UNIPROTKB|H9KZS5 - symbol:H9KZS5 "Uncharacterized protein... 124 0.00010 1
RGD|1311071 - symbol:Recql "RecQ protein-like (DNA helica... 98 0.00011 2
UNIPROTKB|Q6AYJ1 - symbol:Recql "ATP-dependent DNA helica... 98 0.00011 2
UNIPROTKB|P30015 - symbol:lhr "member of ATP-dependent h... 135 0.00011 1
SGD|S000002319 - symbol:DHH1 "Cytoplasmic DExD/H-box heli... 92 0.00011 2
TIGR_CMR|BA_2109 - symbol:BA_2109 "ATP-dependent RNA heli... 88 0.00015 2
UNIPROTKB|A0JN36 - symbol:RECQL "Uncharacterized protein"... 94 0.00020 2
WARNING: Descriptions of 32 database sequences were not reported due to the
limiting value of parameter V = 100.
>ASPGD|ASPL0000001605 [details] [associations]
symbol:AN10757 species:162425 "Emericella nidulans"
[GO:0035861 "site of double-strand break" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000405 "bubble DNA binding"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0000733 "DNA strand renaturation" evidence=IEA] [GO:1901255
"nucleotide-excision repair involved in interstrand cross-link
repair" evidence=IEA] [GO:0032508 "DNA duplex unwinding"
evidence=IEA] [GO:0070914 "UV-damage excision repair" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:BN001301 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014939 SMART:SM01075 OMA:DELHVYK
InterPro:IPR018973 Pfam:PF09369 ProteinModelPortal:C8V3J7
EnsemblFungi:CADANIAT00007106 Uniprot:C8V3J7
Length = 1210
Score = 848 (303.6 bits), Expect = 1.3e-116, Sum P(3) = 1.3e-116
Identities = 207/579 (35%), Positives = 313/579 (54%)
Query: 376 ILSNLRLIAFSLVTTEV-YLIFLF-IRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVY 433
I +N ++ +++ E + FL ++FVV+DE H Y G FG H ALI+RRL R+C+ V
Sbjct: 501 IFTNPDMLHITILPQESSWRTFLQNLKFVVVDELHVYNGLFGSHVALIMRRLRRICAAVG 560
Query: 434 GSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKS 493
F+ +AT ANP EH + + ++LI DGSPC +K F+ WN
Sbjct: 561 NRHVRFISCSATVANPEEHMRAIFGVDDVQLIDFDGSPCGRKEFLCWN------------ 608
Query: 494 QTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTR-EILEET 552
T D + + ++E + LF +++ G R IAFCR RKLCE++L R E
Sbjct: 609 -TPFKDPGDPTSGRGDSVAEAARLFCQLILRGARVIAFCRIRKLCEVLLQAVRSECNRLE 667
Query: 553 APHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPG 612
P + + I YR GY +DRRRIE + F G+L G+ ATNALELG+D+G +D + LGFP
Sbjct: 668 RPEVGNMIMGYRGGYSPQDRRRIEAEMFQGQLLGIVATNALELGVDIGSLDAVITLGFPY 727
Query: 613 SIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIEC-CHIDAQNHKVL 671
SI++L QQ+GR+GRR + SL++ + P DQ++M+ PE+LF P C +D N VL
Sbjct: 728 SISNLRQQSGRAGRRNKDSLSILIGERYPTDQFYMRNPEELFSKP-NCELQVDLTNELVL 786
Query: 672 EQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKM 731
E H+ CAA E P+ D+ YFG LS +T L A F Y HE+
Sbjct: 787 EGHVQCAAFELPIKPDDDQIYFGPQLSEFAST-----------RLVRDAMGF-YHCHERF 834
Query: 732 ---PSHTISIRAIESERYEVIDMQS--NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKE 786
PS + IR E + + VID + N VLEE+E S+AFF +YEG +++HQG TYLVKE
Sbjct: 835 RPQPSRCVPIRDTEDQHFAVIDTTNARNVVLEEVEASRAFFTLYEGGIFLHQGQTYLVKE 894
Query: 787 LNLSSKIALCQKADLKYFTKTRDYTDI------H---VSGGNNAYATKISKDQLTKTTAQ 837
LN A + + T RD+TDI H ++ + ATKI+ T++ +
Sbjct: 895 LNPDRFFARVVCVTVDWNTMQRDFTDIDPVETEHMRLITSSSPTKATKITDSSSTRSLER 954
Query: 838 ALACTVTTTW---------FGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKA 888
+ + +GF+++ + G + D V + P + ++ +W+ VP+
Sbjct: 955 EKERAIRAFFGPIRIHAIVYGFFKIDK-RGRVLDAVAVDNPPITIMTKGMWLDVPKVALD 1013
Query: 889 VVE-QNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPEC 926
++E + + + +HAA HA+L ++P +V + D+ EC
Sbjct: 1014 ILESRRLNIAAAIHAAEHAILSLLPSFVISSPGDVRTEC 1052
Score = 293 (108.2 bits), Expect = 1.3e-116, Sum P(3) = 1.3e-116
Identities = 69/185 (37%), Positives = 104/185 (56%)
Query: 205 EMVEHLRKGIGSQGQMV---HVEDISARKAVLVEIPDALLDNTKSALKST-GISKLYSHQ 260
E++E +R GQ+V H A+ A+ ++ AL + +AL +T GI++ YSHQ
Sbjct: 346 EIIEEIRCLDWYTGQIVPDGH-RAFDAQPAIYGDLRFALSQDLVNALYNTKGITRFYSHQ 404
Query: 261 AESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKXXXXXXXXXX 320
AE+I GKNV+V+T TSSGKSL Y +P+L L D S +Y+FPTK
Sbjct: 405 AEAINHLHDGKNVIVSTSTSSGKSLIYQVPMLHELEQDSDSRGMYIFPTKALAQDQKRSM 464
Query: 321 XXMTKAFDA--SIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILS 378
+ + ++ + +DGDT +R +RD AR++ TNPDMLH++ILP + L
Sbjct: 465 QELLQYLNSLQGTMVETFDGDTPMANRNLIRDEARIIFTNPDMLHITILPQESSWRTFLQ 524
Query: 379 NLRLI 383
NL+ +
Sbjct: 525 NLKFV 529
Score = 50 (22.7 bits), Expect = 1.3e-116, Sum P(3) = 1.3e-116
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 57 GVRVGIEDIENLAVLCPKVVQF 78
G + IEDI + VL P+ V+F
Sbjct: 166 GTELTIEDIARVRVLIPRAVRF 187
Score = 39 (18.8 bits), Expect = 1.8e-115, Sum P(3) = 1.8e-115
Identities = 11/60 (18%), Positives = 28/60 (46%)
Query: 74 KVVQFANDDMESKNHDDSIVIINVSTEERDKVEDNLGSGQKAISLSKIFNAMKKRERSFK 133
+V Q A D ++ ++ + ++ ++DN+ ++ + SKI +M ++ K
Sbjct: 43 QVQQSAEDTNAARQKRKLDETVSETLNSQENIDDNVAPVEEESAQSKIAGSMSATKQPGK 102
>TIGR_CMR|DET_0967 [details] [associations]
symbol:DET_0967 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000027
GenomeReviews:CP000027_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG1205 InterPro:IPR018973
Pfam:PF09369 KO:K06877 HOGENOM:HOG000250411 OMA:ALWEPPL
InterPro:IPR022307 TIGRFAMs:TIGR03817 RefSeq:YP_181690.1
ProteinModelPortal:Q3Z7V9 STRING:Q3Z7V9 GeneID:3229689
KEGG:det:DET0967 PATRIC:21608983 ProtClustDB:CLSK935591
BioCyc:DETH243164:GJNF-968-MONOMER Uniprot:Q3Z7V9
Length = 764
Score = 841 (301.1 bits), Expect = 2.0e-115, Sum P(2) = 2.0e-115
Identities = 197/534 (36%), Positives = 297/534 (55%)
Query: 424 RLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPT 483
R R YGS P F+ S+AT A+P H L L ++ NDG+P ++K FV WNP
Sbjct: 205 RRLRRLCRYYGSSPQFILSSATIASPGVHAQSLTGLP-FSVVDNDGAPRSEKDFVFWNPP 263
Query: 484 SCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLS 543
+++ + + R++AN SE S+L +E+V H +R + F R+++L EL+
Sbjct: 264 -----IIDPA----NGIRHSAN------SESSFLLSELVSHEIRTLDFTRTKRLTELIYK 308
Query: 544 YTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHID 603
Y+R+ L P D I YR GY AEDRR+IE++ F G+L G +TNALELGID+G +
Sbjct: 309 YSRDRLIAIKPEFADLIKPYRGGYTAEDRRKIEKELFSGRLLGAVSTNALELGIDIGDLG 368
Query: 604 VTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHI 663
T+ GFPGSI+S +QQAGRSGRR SL+ + + PLDQY+M PEKLF S E I
Sbjct: 369 ATILTGFPGSISSTFQQAGRSGRRCGHSLSFLLGLDNPLDQYYMNNPEKLFNSGFEGTFI 428
Query: 664 DAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSD-PSLDSSAKI 722
+ +N + HL+CAA E P++ + FG L + TL L+ + SA I
Sbjct: 429 NPENPYIYRVHLLCAAWEMPVNAS-ETDMFGENLIEELDTLAQERVLNKRRDNYYLSADI 487
Query: 723 FEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTY 782
Y P+ ISIR+ + + +ID +S +++E ++ AF Q Y GAVY+HQG +Y
Sbjct: 488 -SY------PAGDISIRSASGKDFCLIDAESGQIIETLDFQTAFLQAYPGAVYLHQGESY 540
Query: 783 LVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALA-C 841
LV +L+S+IAL +K L Y+T TRD T+I + ++ K++L + L
Sbjct: 541 LVSRFDLNSQIALLEKKKLDYYTVTRDLTEISI--------IEVLKNKLVGDISVYLGKV 592
Query: 842 TVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQS-VKAVVEQNFSFRSGL 900
VT T G+ R + + + +L LP ++ + AVW ++P V A+ + F +
Sbjct: 593 DVTLTVTGYRRKAQFTEQVLSEEQLDLPPQTFPTIAVWFKLPSDIVSAMGKTKMDFHGAI 652
Query: 901 HAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
HAA HAL+ ++P++ C+ D+ H P I +YD HPGG G++++
Sbjct: 653 HAAEHALIGLLPLFALCDRGDIGGVSTPLHPDTGTPA-IFIYDGHPGGVGIAEK 705
Score = 317 (116.6 bits), Expect = 2.0e-115, Sum P(2) = 2.0e-115
Identities = 68/168 (40%), Positives = 96/168 (57%)
Query: 217 QGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVA 276
Q Q+ H+E + R A LL + L+ I LY+HQA ++ S GKN++VA
Sbjct: 17 QEQIAHIERLPYRPAEYARTDAPLLPRIDARLRKKRILPLYTHQANAVNLSRQGKNIIVA 76
Query: 277 TMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKXXXXXXXXXXXXMT-KAFDASIDIGV 335
T +SGKSLCYNLPVLE L D ++ ALY++P K + + A +I V
Sbjct: 77 TPAASGKSLCYNLPVLEKLLSDPNARALYLYPAKALAQDQLRSLKSLAVPSLLADEEIAV 136
Query: 336 YDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLI 383
YDGDT R +R AR++++NPDMLH+SILP H ++ R L +L +
Sbjct: 137 YDGDTPGNSRADIRLKARIILSNPDMLHVSILPSHQKWGRFLRHLEYV 184
Score = 231 (86.4 bits), Expect = 2.4e-106, Sum P(2) = 2.4e-106
Identities = 50/109 (45%), Positives = 70/109 (64%)
Query: 376 ILSNLRLIAFSLVTT-EVYLIFL-FIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVY 433
ILSN ++ S++ + + + FL + +VVIDEAH Y+G FG H A I+RRL RLC + Y
Sbjct: 156 ILSNPDMLHVSILPSHQKWGRFLRHLEYVVIDEAHIYRGVFGSHLANIIRRLRRLCRY-Y 214
Query: 434 GSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNP 482
GS P F+ S+AT A+P H L L ++ NDG+P ++K FV WNP
Sbjct: 215 GSSPQFILSSATIASPGVHAQSLTGLP-FSVVDNDGAPRSEKDFVFWNP 262
>SGD|S000002699 [details] [associations]
symbol:HRQ1 "3'-5'DNA helicase that has DNA strand annealing
activity" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA
helicase activity" evidence=IDA] [GO:0000733 "DNA strand
renaturation" evidence=IDA] [GO:0032508 "DNA duplex unwinding"
evidence=IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006950 "response to stress" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SGD:S000002699 GO:GO:0005524 GO:GO:0005634
GO:GO:0006950 EMBL:BK006938 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000733
EMBL:U51031 RefSeq:NP_010581.3 GeneID:851889 KEGG:sce:YDR295C
eggNOG:COG1205 HOGENOM:HOG000163591 OrthoDB:EOG4BVW2R
InterPro:IPR018973 Pfam:PF09369 PIR:S70120 RefSeq:NP_010577.3
ProteinModelPortal:Q05549 SMR:Q05549 MINT:MINT-2493111
STRING:Q05549 PaxDb:Q05549 EnsemblFungi:YDR291W GeneID:851885
KEGG:sce:YDR291W CYGD:YDR291w KO:K06877 OMA:CKENSLV NextBio:969859
Genevestigator:Q05549 GermOnline:YDR291W Uniprot:Q05549
Length = 1077
Score = 779 (279.3 bits), Expect = 7.4e-103, Sum P(2) = 7.4e-103
Identities = 193/598 (32%), Positives = 318/598 (53%)
Query: 376 ILSNLRLIAFSLVTTEV-YLIFLF-IRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVY 433
I +N +I S++ + FL+ ++ VV+DE H YKG FG H AL++RRL RLC Y
Sbjct: 392 IFTNPDMIHTSILPNHANWRHFLYHLKLVVVDELHIYKGLFGSHVALVMRRLLRLCHCFY 451
Query: 434 -GSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNK 492
S F+ +AT +P +H ++ ++ + LI DGSP K V+WNP +L +
Sbjct: 452 ENSGLQFISCSATLKSPVQHMKDMFGINEVTLIHEDGSPTGAKHLVVWNPP-----ILPQ 506
Query: 493 SQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEET 552
+ K + I E + + +++ + +R IAFC R++CEL++ R I ET
Sbjct: 507 HE----------RKRENFIRESAKILVQLILNNVRTIAFCYVRRVCELLMKEVRNIFIET 556
Query: 553 APH-LVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFP 611
LV + YR GY A DRR+IER+ F G L V +TNALELGID+G +D L GFP
Sbjct: 557 GREDLVTEVMSYRGGYSASDRRKIEREMFHGNLKAVISTNALELGIDIGGLDAVLMCGFP 616
Query: 612 GSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFK-SPIECCH---IDAQN 667
S+A+ QQ+GR+GRR SL + VA + P+DQ+++ +PE L + + E +D N
Sbjct: 617 LSMANFHQQSGRAGRRNNDSLTLVVASDSPVDQHYVAHPESLLEVNNFESYQDLVLDFNN 676
Query: 668 HKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIG 727
+LE H+ CAA E P++ D++YF I R + + D +S + +
Sbjct: 677 ILILEGHIQCAAFELPINFERDKQYFTESHLRKICV--ERLHHNQD-GYHASNRFLPW-- 731
Query: 728 HEKMPSHTISIRAIESERYEVIDMQS--NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVK 785
PS +S+R E +++ V+D+ + N ++EEIE S+ F +Y+G +++HQG+ YLVK
Sbjct: 732 ----PSKCVSLRGGEEDQFAVVDITNGRNIIIEEIEASRTSFTLYDGGIFIHQGYPYLVK 787
Query: 786 ELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTT 845
E N + A Q+ D+ + T RD+TD+ + ++ + L + + T
Sbjct: 788 EFNPDERYAKVQRVDVDWVTNQRDFTDV------DPQEIELIRS-LRNSDVPVYFGKIKT 840
Query: 846 TW--FGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQ-SVKAVVEQNFSFRSGLHA 902
T FGF+++ + II D +E + P S+ +WI +P+ +++ ++ + +H
Sbjct: 841 TIIVFGFFKVDKYKRII-DAIETHNPPVIINSKGLWIDMPKYALEICQKKQLNVAGAIHG 899
Query: 903 ASHALLHVVPIYVRCNFSDLAPECPNPHDS-------RYFPERILLYDRHPG--GTGV 951
A HA++ ++P ++ ++ EC P R P R++ YD G G+G+
Sbjct: 900 AQHAIMGMLPRFIVAGVDEIQTECKAPEKEFAERQTKRKRPARLIFYDSKGGKYGSGL 957
Score = 260 (96.6 bits), Expect = 7.4e-103, Sum P(2) = 7.4e-103
Identities = 60/181 (33%), Positives = 93/181 (51%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
+M+E L+ Q+ H I +R A + L ++ YSHQA++I
Sbjct: 243 QMIEKLKSTEFYASQIKHCFTIPSRTAKYKGLCFELAPEVYQGMEH---ENFYSHQADAI 299
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKXXXXXXXXXXXXMT 324
+ G+NV++ T TSSGKSL Y L ++ L D S+ +Y+FPTK +
Sbjct: 300 NSLHQGENVIITTSTSSGKSLIYQLAAIDLLLKDPESTFMYIFPTKALAQDQKRAFKVIL 359
Query: 325 KAFDA--SIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRL 382
+ + YDGDT ++R ++R NAR++ TNPDM+H SILP H + L +L+L
Sbjct: 360 SKIPELKNAVVDTYDGDTEPEERAYIRKNARVIFTNPDMIHTSILPNHANWRHFLYHLKL 419
Query: 383 I 383
+
Sbjct: 420 V 420
>POMBASE|SPAC23A1.19c [details] [associations]
symbol:hrq1 "RecQ type DNA helicase Hrq1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000405 "bubble DNA
binding" evidence=IDA] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006289
"nucleotide-excision repair" evidence=IMP;IPI] [GO:0035861 "site of
double-strand break" evidence=IDA] [GO:0043140 "ATP-dependent 3'-5'
DNA helicase activity" evidence=IDA] [GO:0070914 "UV-damage
excision repair" evidence=IMP] [GO:1901255 "nucleotide-excision
repair involved in interstrand cross-link repair" evidence=IMP]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC23A1.19c GO:GO:0005524
GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0070914
GO:GO:0043140 GO:GO:0000405 InterPro:IPR014939 Pfam:PF08839
SMART:SM01075 GO:GO:0035861 RefSeq:NP_594448.2
ProteinModelPortal:O13983 STRING:O13983 EnsemblFungi:SPAC23A1.19c.1
GeneID:2542036 KEGG:spo:SPAC23A1.19c eggNOG:COG1205
HOGENOM:HOG000163591 OMA:DELHVYK OrthoDB:EOG4BVW2R NextBio:20803114
GO:GO:1901255 InterPro:IPR018973 Pfam:PF09369 Uniprot:O13983
Length = 1063
Score = 769 (275.8 bits), Expect = 3.1e-102, Sum P(3) = 3.1e-102
Identities = 181/572 (31%), Positives = 299/572 (52%)
Query: 393 YLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREH 452
Y F ++ V+DEAH Y G FG H A +LRR+ R+ + S FV +AT +P +H
Sbjct: 432 YYFFKNLKLFVLDEAHVYNGIFGVHVAFVLRRMRRIAEYFGNSQYRFVSCSATIEDPLQH 491
Query: 453 CMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPIS 512
++ + ++LI SP K FV+WNP D ++ + S IS
Sbjct: 492 MKKIFGVDNIKLINYTSSPSGSKKFVMWNPPYV-------------DPKHPDDGKKSAIS 538
Query: 513 EVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILE-ETAPHLVDSICVYRAGYVAED 571
E S L + + +R I FCR RK CE ++ R+ L+ + L+ I YRAGY ++
Sbjct: 539 EASKLLIKFAEKRVRTIVFCRVRKTCESLMRLVRQELKTKQKGDLLSKIQSYRAGYTVQE 598
Query: 572 RRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPS 631
RR+IE + F GKL G+ ATNALELGID+G +D + +GFP S+++L QQ GR+GRR + S
Sbjct: 599 RRKIESEMFNGKLYGIIATNALELGIDIGSLDAVITIGFPYSLSNLRQQFGRAGRRNKSS 658
Query: 632 LAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEK 691
LAVY+ P+DQ+++K+P + P +D N +L HL CAA E P+++ DEK
Sbjct: 659 LAVYIVETFPVDQFYLKHPILIHTQPNAELTLDLTNEVLLASHLQCAAYELPINIRSDEK 718
Query: 692 YFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEK---MPSHTISIRAIESERYEV 748
+FG+ + + +L+ + Y H K P+ + IR++ + + +
Sbjct: 719 FFGNQIQD-----------ICEANLEMVEE--SYRPHPKYLPFPASQVRIRSVSEDMFTL 765
Query: 749 IDMQS--NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTK 806
+D+ + N +LE +E + YEGAVY++QG T++++ LN++ +I + D+++ T
Sbjct: 766 VDVTNDKNVILELLEPFRVALTAYEGAVYVYQGKTFIIRLLNINKRIITAHQVDVEWSTL 825
Query: 807 TRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVEL 866
RD+TD+ + + + K T A T FG++++ + I+ D V++
Sbjct: 826 QRDFTDV------DPVRSLMKKTMHGSTNIYFGAVKATLHVFGYFKVNKQKDIL-DVVDI 878
Query: 867 YLPKYSYESQAVWIQVPQSVKAVVE-QNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPE 925
+S+ WI VP + V+ + + + +HAA HALL ++PI++ + +D+ E
Sbjct: 879 TDHPVEIDSRGFWIDVPWHIIEVLSLKKINGAASIHAAQHALLSLMPIFISNSGNDIRTE 938
Query: 926 CP-------NPHDSRYFPERILLYDRHPGGTG 950
C R P R++ YD +G
Sbjct: 939 CKAGEKEYKEAKSERRRPSRLIFYDNCGDSSG 970
Score = 237 (88.5 bits), Expect = 3.1e-102, Sum P(3) = 3.1e-102
Identities = 68/207 (32%), Positives = 105/207 (50%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVE---IPDALLDNTKSAL-KSTGISKLYSHQ 260
E++ + +GQ+V E + AV + + L +AL S I K Y HQ
Sbjct: 258 ELLNEIASESSYEGQIVQ-EALHTYPAVEAQYGALSRPLSQELINALYTSRNIEKTYKHQ 316
Query: 261 AESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKXXXXXXXXXX 320
A++I G +V+V+T TSSGKSL Y +P+L++L D S+A ++FPTK
Sbjct: 317 ADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSLLEDNQSTAFFVFPTKSLAQDQKKSL 376
Query: 321 XXMTKAFDA--SIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILS 378
+ +I + +DGDT + R + +A ++ TNPDMLH +ILP ++
Sbjct: 377 IDILSYMPTLKNIRVDTFDGDTPLESRESIIRSANIIFTNPDMLHQTILPNANRWYYFFK 436
Query: 379 NLRLIAFSLVTTEVYL-IF-LFIRFVV 403
NL+L F L VY IF + + FV+
Sbjct: 437 NLKL--FVLDEAHVYNGIFGVHVAFVL 461
Score = 41 (19.5 bits), Expect = 3.1e-102, Sum P(3) = 3.1e-102
Identities = 13/65 (20%), Positives = 27/65 (41%)
Query: 14 PVWLKKIVEAFAFVSIFSAHLQLRREKVI-LSHVKGALNQLEKFGVRVGIEDIENLAVLC 72
P + F ++ L LR I + ++ Q K + +G D+ L +C
Sbjct: 52 PSIFDNLFNLFKVINTTYTFLYLRNSLTITFPLLNSSVKQSLKKELTIG--DLSQLREIC 109
Query: 73 PKVVQ 77
P++++
Sbjct: 110 PQIIE 114
>CGD|CAL0003767 [details] [associations]
symbol:orf19.7213 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 CGD:CAL0003767
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AACQ01000092 eggNOG:COG1205
InterPro:IPR018973 Pfam:PF09369 KO:K06877 RefSeq:XP_715014.1
ProteinModelPortal:Q59ZX8 GeneID:3643343 KEGG:cal:CaO19.7213
Uniprot:Q59ZX8
Length = 1123
Score = 882 (315.5 bits), Expect = 2.5e-88, P = 2.5e-88
Identities = 244/720 (33%), Positives = 371/720 (51%)
Query: 235 EIPDALLDNTKSALKSTGISKLYSHQAESIMASL--AGKN-VVVATMTSSGKSLCYNLPV 291
++ DALL TK+ G LYSHQA ++ L A K+ V+V+T T+SGKSL Y +PV
Sbjct: 281 DLKDALL-KTKNICLEDG---LYSHQAGALETLLNPANKSHVIVSTSTASGKSLIYQIPV 336
Query: 292 LEALSHDLSS-------SALYMFPTKXXXXXXXXXXXXMTK----AFDASIDIGVYDGDT 340
L ++ D+SS +A ++FPTK K A I + YDGDT
Sbjct: 337 LNSILWDISSGLKGRHTTAFFIFPTKALAQDQIRHFREFLKNLPTASSRPIIVNTYDGDT 396
Query: 341 TQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIR 400
K+R + + ++ TNPD +H SILP H +N + +L +
Sbjct: 397 PFKERDKISKESDIIFTNPDTIHASILPNHS-----FNNWKEFLGAL------------K 439
Query: 401 FVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPS--FVFSTATSANPREHCMELAN 458
FVV+DE H YKG FG + ++ RL R+ ++ D S ++ +AT NP H + +
Sbjct: 440 FVVMDELHVYKGTFGVNVGFVMGRLSRM-KNLLSRDDSIQYISCSATIHNPVSHFRTVCS 498
Query: 459 LSTLELI---QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVS 515
L ELI DGSPC +K ++WNP ++N+ + +DT + ISE +
Sbjct: 499 LPENELIVHVDQDGSPCCEKKLIVWNPPP----LMNQ-RGQKEDTVDKYVPRVGMISESA 553
Query: 516 YLFAEMV--QHGLRCIAFCRSRKLCELVLSYTREILEETAPH--LVDS-ICVYRAGYVAE 570
L +V L+ I FC R +CE+++ R +L+ + + + S I YR GY
Sbjct: 554 KLLVNLVTANDSLKIIVFCPIRVVCEMLMKEVRHLLQNSFKNSGITQSDIMAYRGGYSKS 613
Query: 571 DRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERP 630
DRR IE+ F G+L + ATNALELGID+ H+DV + GFP S ++L QQ GR+GRR+
Sbjct: 614 DRRIIEQKMFSGQLRAIVATNALELGIDLSHLDVVITCGFPMSKSNLHQQFGRAGRRKNA 673
Query: 631 --SLAVYVAFEGPLDQYFMKYPEKLFKSPIE--CCH--IDAQNHK-VLEQHLVCAALEHP 683
SLA++V + P+DQY+++ P +L + E C D + K +LE+HL CAA E P
Sbjct: 674 NGSLAIFVPGKNPIDQYYLENPHELLGNDYEDLCVSGVRDMECGKMILERHLQCAAYEEP 733
Query: 684 LSLIYDEKYF--GSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAI 741
+ L D K+ G LK L D ++ K + P +SIRA+
Sbjct: 734 IELD-DIKWLMPGGSKKDFEDVLKTNLILDIDGKFKTNPKYYP------KPHKVVSIRAV 786
Query: 742 ESERYEVIDMQSNE--VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKA 799
E + V+D+ +N ++EEIE S+ F +YEG +++HQG YLVKE N A ++
Sbjct: 787 EEPAFAVVDITNNRNIIIEEIEFSRTTFTLYEGGIFLHQGQPYLVKEFNDKEFYAKVERV 846
Query: 800 DLKYFTKTRDYTDI---HVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRG 856
++ + T RDYTD+ V Y I + + +T FGF+++ R
Sbjct: 847 NVDWTTSQRDYTDVDPEEVEFVKPLYP--IDAPKALDIPVFSGKVKITMKVFGFFKVNRR 904
Query: 857 SGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVV-EQNFSFRSGLHAASHALLHVVPIYV 915
I+ + VE+ P S+ W+ VPQ +V E+ S G+HAASHA+++++P+Y+
Sbjct: 905 EEIL-EVVEVKNPPVIAFSKGFWLNVPQETLEIVKEKKLSPAGGIHAASHAIMNMLPVYI 963
Score = 288 (106.4 bits), Expect = 2.6e-21, P = 2.6e-21
Identities = 90/306 (29%), Positives = 142/306 (46%)
Query: 670 VLEQHLVCAALEHPLSLIYDEKYF--GSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIG 727
+LE+HL CAA E P+ L D K+ G LK L D ++ K +
Sbjct: 720 ILERHLQCAAYEEPIELD-DIKWLMPGGSKKDFEDVLKTNLILDIDGKFKTNPKYYPK-P 777
Query: 728 HEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKEL 787
H+ + + A I N ++EEIE S+ F +YEG +++HQG YLVKE
Sbjct: 778 HKVVSIRAVEEPAFAVVD---ITNNRNIIIEEIEFSRTTFTLYEGGIFLHQGQPYLVKEF 834
Query: 788 NLSSKIALCQKADLKYFTKTRDYTDI---HVSGGNNAYATKISKDQLTKTTAQALACTVT 844
N A ++ ++ + T RDYTD+ V Y I + + +T
Sbjct: 835 NDKEFYAKVERVNVDWTTSQRDYTDVDPEEVEFVKPLYP--IDAPKALDIPVFSGKVKIT 892
Query: 845 TTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVV-EQNFSFRSGLHAA 903
FGF+++ R I+ + VE+ P S+ W+ VPQ +V E+ S G+HAA
Sbjct: 893 MKVFGFFKVNRREEIL-EVVEVKNPPVIAFSKGFWLNVPQETLEIVKEKKLSPAGGIHAA 951
Query: 904 SHALLHVVPIYV--------RCNFSDLAPECPNP-------HDSRYFPERILLYDRH--P 946
SHA+++++P+Y+ + ++L+ EC +P R P R++ YD P
Sbjct: 952 SHAIMNMLPVYINGASENGRQTADTELSTECKSPAKEFSTRQSHRVRPARLVFYDTKGGP 1011
Query: 947 GGTGVS 952
GTG+S
Sbjct: 1012 SGTGLS 1017
>UNIPROTKB|Q59ZX8 [details] [associations]
symbol:CaO19.7213 "Putative uncharacterized protein"
species:237561 "Candida albicans SC5314" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 CGD:CAL0003767 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AACQ01000092 eggNOG:COG1205 InterPro:IPR018973 Pfam:PF09369
KO:K06877 RefSeq:XP_715014.1 ProteinModelPortal:Q59ZX8
GeneID:3643343 KEGG:cal:CaO19.7213 Uniprot:Q59ZX8
Length = 1123
Score = 882 (315.5 bits), Expect = 2.5e-88, P = 2.5e-88
Identities = 244/720 (33%), Positives = 371/720 (51%)
Query: 235 EIPDALLDNTKSALKSTGISKLYSHQAESIMASL--AGKN-VVVATMTSSGKSLCYNLPV 291
++ DALL TK+ G LYSHQA ++ L A K+ V+V+T T+SGKSL Y +PV
Sbjct: 281 DLKDALL-KTKNICLEDG---LYSHQAGALETLLNPANKSHVIVSTSTASGKSLIYQIPV 336
Query: 292 LEALSHDLSS-------SALYMFPTKXXXXXXXXXXXXMTK----AFDASIDIGVYDGDT 340
L ++ D+SS +A ++FPTK K A I + YDGDT
Sbjct: 337 LNSILWDISSGLKGRHTTAFFIFPTKALAQDQIRHFREFLKNLPTASSRPIIVNTYDGDT 396
Query: 341 TQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIR 400
K+R + + ++ TNPD +H SILP H +N + +L +
Sbjct: 397 PFKERDKISKESDIIFTNPDTIHASILPNHS-----FNNWKEFLGAL------------K 439
Query: 401 FVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPS--FVFSTATSANPREHCMELAN 458
FVV+DE H YKG FG + ++ RL R+ ++ D S ++ +AT NP H + +
Sbjct: 440 FVVMDELHVYKGTFGVNVGFVMGRLSRM-KNLLSRDDSIQYISCSATIHNPVSHFRTVCS 498
Query: 459 LSTLELI---QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVS 515
L ELI DGSPC +K ++WNP ++N+ + +DT + ISE +
Sbjct: 499 LPENELIVHVDQDGSPCCEKKLIVWNPPP----LMNQ-RGQKEDTVDKYVPRVGMISESA 553
Query: 516 YLFAEMV--QHGLRCIAFCRSRKLCELVLSYTREILEETAPH--LVDS-ICVYRAGYVAE 570
L +V L+ I FC R +CE+++ R +L+ + + + S I YR GY
Sbjct: 554 KLLVNLVTANDSLKIIVFCPIRVVCEMLMKEVRHLLQNSFKNSGITQSDIMAYRGGYSKS 613
Query: 571 DRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERP 630
DRR IE+ F G+L + ATNALELGID+ H+DV + GFP S ++L QQ GR+GRR+
Sbjct: 614 DRRIIEQKMFSGQLRAIVATNALELGIDLSHLDVVITCGFPMSKSNLHQQFGRAGRRKNA 673
Query: 631 --SLAVYVAFEGPLDQYFMKYPEKLFKSPIE--CCH--IDAQNHK-VLEQHLVCAALEHP 683
SLA++V + P+DQY+++ P +L + E C D + K +LE+HL CAA E P
Sbjct: 674 NGSLAIFVPGKNPIDQYYLENPHELLGNDYEDLCVSGVRDMECGKMILERHLQCAAYEEP 733
Query: 684 LSLIYDEKYF--GSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAI 741
+ L D K+ G LK L D ++ K + P +SIRA+
Sbjct: 734 IELD-DIKWLMPGGSKKDFEDVLKTNLILDIDGKFKTNPKYYP------KPHKVVSIRAV 786
Query: 742 ESERYEVIDMQSNE--VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKA 799
E + V+D+ +N ++EEIE S+ F +YEG +++HQG YLVKE N A ++
Sbjct: 787 EEPAFAVVDITNNRNIIIEEIEFSRTTFTLYEGGIFLHQGQPYLVKEFNDKEFYAKVERV 846
Query: 800 DLKYFTKTRDYTDI---HVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRG 856
++ + T RDYTD+ V Y I + + +T FGF+++ R
Sbjct: 847 NVDWTTSQRDYTDVDPEEVEFVKPLYP--IDAPKALDIPVFSGKVKITMKVFGFFKVNRR 904
Query: 857 SGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVV-EQNFSFRSGLHAASHALLHVVPIYV 915
I+ + VE+ P S+ W+ VPQ +V E+ S G+HAASHA+++++P+Y+
Sbjct: 905 EEIL-EVVEVKNPPVIAFSKGFWLNVPQETLEIVKEKKLSPAGGIHAASHAIMNMLPVYI 963
Score = 288 (106.4 bits), Expect = 2.6e-21, P = 2.6e-21
Identities = 90/306 (29%), Positives = 142/306 (46%)
Query: 670 VLEQHLVCAALEHPLSLIYDEKYF--GSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIG 727
+LE+HL CAA E P+ L D K+ G LK L D ++ K +
Sbjct: 720 ILERHLQCAAYEEPIELD-DIKWLMPGGSKKDFEDVLKTNLILDIDGKFKTNPKYYPK-P 777
Query: 728 HEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKEL 787
H+ + + A I N ++EEIE S+ F +YEG +++HQG YLVKE
Sbjct: 778 HKVVSIRAVEEPAFAVVD---ITNNRNIIIEEIEFSRTTFTLYEGGIFLHQGQPYLVKEF 834
Query: 788 NLSSKIALCQKADLKYFTKTRDYTDI---HVSGGNNAYATKISKDQLTKTTAQALACTVT 844
N A ++ ++ + T RDYTD+ V Y I + + +T
Sbjct: 835 NDKEFYAKVERVNVDWTTSQRDYTDVDPEEVEFVKPLYP--IDAPKALDIPVFSGKVKIT 892
Query: 845 TTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVV-EQNFSFRSGLHAA 903
FGF+++ R I+ + VE+ P S+ W+ VPQ +V E+ S G+HAA
Sbjct: 893 MKVFGFFKVNRREEIL-EVVEVKNPPVIAFSKGFWLNVPQETLEIVKEKKLSPAGGIHAA 951
Query: 904 SHALLHVVPIYV--------RCNFSDLAPECPNP-------HDSRYFPERILLYDRH--P 946
SHA+++++P+Y+ + ++L+ EC +P R P R++ YD P
Sbjct: 952 SHAIMNMLPVYINGASENGRQTADTELSTECKSPAKEFSTRQSHRVRPARLVFYDTKGGP 1011
Query: 947 GGTGVS 952
GTG+S
Sbjct: 1012 SGTGLS 1017
>UNIPROTKB|O06359 [details] [associations]
symbol:Rv3649 "PROBABLE HELICASE" species:1773
"Mycobacterium tuberculosis" [GO:0005886 "plasma membrane"
evidence=IDA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GenomeReviews:AL123456_GR EMBL:BX842583 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR018973 Pfam:PF09369 KO:K06877 EMBL:AL123456 PIR:B70564
RefSeq:NP_218166.1 RefSeq:YP_006517136.1 ProteinModelPortal:O06359
SMR:O06359 EnsemblBacteria:EBMYCT00000002227 GeneID:13317257
GeneID:885841 KEGG:mtu:Rv3649 KEGG:mtv:RVBD_3649 PATRIC:18156720
TubercuList:Rv3649 HOGENOM:HOG000250411 OMA:ALWEPPL
ProtClustDB:CLSK792622 InterPro:IPR022307 TIGRFAMs:TIGR03817
Uniprot:O06359
Length = 771
Score = 625 (225.1 bits), Expect = 3.8e-84, Sum P(2) = 3.8e-84
Identities = 148/419 (35%), Positives = 225/419 (53%)
Query: 399 IRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELAN 458
+RFV++DE H Y+G FG + A++LRRL RLC+ Y + P+ +F++AT+A+P +L
Sbjct: 185 LRFVIVDECHYYRGVFGSNVAMVLRRLLRLCAR-YSAHPTVIFASATTASPGATAADLIG 243
Query: 459 LSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLF 518
+E+ + DGSP + LW P LRS D+ A + S+ +E + +
Sbjct: 244 QPVVEVTE-DGSPRGARTVALWEPA--LRS-------DVIGEHGAPVRRSAG-AEAARVM 292
Query: 519 AEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERD 578
A+++ G + + F RSR+ EL R L + AP L D++ YRAGY+AEDR + +
Sbjct: 293 ADLIVEGAQTLTFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQA 352
Query: 579 FFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAF 638
G+L G+A TNALELG+D+ +D + GFPG++AS WQQAGRSGRR + +L V +A
Sbjct: 353 LAEGQLRGLATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIAR 412
Query: 639 EGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLS 698
+ PLD Y + +P L P+E ID N +L L+CAA E PL D + G
Sbjct: 413 DDPLDTYLVHHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLD---DAEVRSWGAV 469
Query: 699 SGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLE 758
+L + G L + + F G + P + +R + +++ + +L
Sbjct: 470 EVAESLVDDGLLRR-----RNGRYFPAPGVK--PHAAVDVRGAIGGQIVIVEAGTGRLLG 522
Query: 759 EIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSG 817
+ +A + GAVY+HQG TY+V L+ IA D Y T R+ TDI V+G
Sbjct: 523 SVGVGQAPAAAHPGAVYLHQGETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTG 581
Score = 244 (91.0 bits), Expect = 3.8e-84, Sum P(2) = 3.8e-84
Identities = 53/139 (38%), Positives = 79/139 (56%)
Query: 247 ALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYM 306
A GIS +SHQAE+ + AG++VV+ T +SGKSL Y L VL AL+ D + ALY+
Sbjct: 50 AFADRGISSPWSHQAEAAELAYAGRHVVIGTGPASGKSLAYQLLVLNALATDSRARALYL 109
Query: 307 FPTKXXXXXXXXXXXXMTKAFDASIDIG--VYDGDTTQKDRMWLRDNARLLITNPDMLHM 364
PTK + A D+ YDGD+ + R + R+ +R L +NP+M H+
Sbjct: 110 SPTKALGHDQLRAAHALAAAVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHL 169
Query: 365 SILPYHGQFSRILSNLRLI 383
S+L H +++ +L NLR +
Sbjct: 170 SVLRNHARWAVLLRNLRFV 188
Score = 198 (74.8 bits), Expect = 3.0e-32, Sum P(2) = 3.0e-32
Identities = 58/225 (25%), Positives = 99/225 (44%)
Query: 732 PSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSS 791
P + +R + +++ + +L + +A + GAVY+HQG TY+V L+
Sbjct: 496 PHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPGAVYLHQGETYVVDSLDFQD 555
Query: 792 KIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFY 851
IA D Y T R+ TDI V+G + TVT G+
Sbjct: 556 GIAFVHAEDPGYATFAREVTDIAVTGTGERLV-------FGPVALGLVPVTVTNHVVGYL 608
Query: 852 RLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQS--VKAVVEQNFSFRSGLHAASHALLH 909
R + SG + D VEL +P+++ + AV + V++ +E LHAA HA +
Sbjct: 609 RR-QLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEAT-RIPGSLHAAEHAAIG 666
Query: 910 VVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
++P+ C+ D+ P + +YD +PGG G +++
Sbjct: 667 LLPLVASCDRGDIGG-MSTATGPEGLPS-VFVYDGYPGGAGFAER 709
>DICTYBASE|DDB_G0268288 [details] [associations]
symbol:DDB_G0268288 "Putative ATP-dependent helicase
HRQ1" species:44689 "Dictyostelium discoideum" [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0268288 GO:GO:0005524
EMBL:AAFI02000003 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG1205 RefSeq:XP_647152.1
EnsemblProtists:DDB0202086 GeneID:8615955 KEGG:ddi:DDB_G0268288
InParanoid:Q55GN2 OMA:FAHRECH Uniprot:Q55GN2
Length = 1263
Score = 371 (135.7 bits), Expect = 1.3e-28, Sum P(2) = 1.3e-28
Identities = 169/672 (25%), Positives = 302/672 (44%)
Query: 205 EMVEH--LRK-GIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQA 261
E ++H +K I +G + H+ ++ L+EIP + L+S G +KLYSHQ
Sbjct: 353 ENIKHEPFKKIAISLKGTITHLYCTEHQEPNLLEIPKEIPSILSGVLRSMGYNKLYSHQL 412
Query: 262 ESIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL----------SHDL-------SSSAL 304
E + G +V++ T TSSGK+LC LP+ E + S ++ + SA+
Sbjct: 413 ECRSKVIQGDDVIITTPTSSGKTLCLFLPIFEEILKAKLKNLQISQNVLKQPLIKTPSAM 472
Query: 305 YMFPTKXXXXXXXXXXXXMTKAF--DASIDIGVYDGDTTQKD---RMWLRDNAR--LLIT 357
++ P + + D ++I + DT QKD R++ + + +++T
Sbjct: 473 FLVPLNALANDQLNSINRLNQMLPIDLRLNINSFSRDT-QKDSLSRLFSNKSTKPDIILT 531
Query: 358 NPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCH 417
+PD LH + Y G L + S + + F +RF+V+DE H Y GA GCH
Sbjct: 532 SPDWLHYQL--YRGG---------LKSGSDDSWRKW--FSDLRFIVLDEIHTYSGALGCH 578
Query: 418 TALILRRL----CRLCSHV--YGSDP-SFVFSTATSANPREHCMELANLSTLELIQNDGS 470
++RR+ L S + S+ F+ ++AT NP E L T+ QN+ S
Sbjct: 579 FINLIRRIQNYHFNLNSKINFLNSNRLQFLMASATVGNPIE-----IGLKTISR-QNE-S 631
Query: 471 PCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIA 530
P Q+L ++ S K + T+N+ S I+ +Q+G++ I
Sbjct: 632 P--QRLHLIDRNGS---GSFGKVFLTLRPTKNSFYLPSIIINN-------WIQYGIKGIV 679
Query: 531 FCRSRK-LCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAA 589
F + K L L S++ + LV Y A A ++ G + + +
Sbjct: 680 FFNTIKSLNTLYESFSNDGKFSQKAKLVRP---YYASLSAAHKKETLEQLKRGNVNVILS 736
Query: 590 TNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVA-FEGPLDQYFMK 648
TNALE G+D+ +D L +G+PGS S Q+ GR GR + L +Y+ + PLD++F
Sbjct: 737 TNALEAGVDISELDACLIIGYPGSKMSWKQRVGRVGR-SKLGLVLYIPDYYSPLDKFFSN 795
Query: 649 YPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDE--KYFGSGLSSGITTLKN 706
P L++ E + +L HL+CA E + Y+ K FG + L N
Sbjct: 796 NPMSLYEGEAEKLSFNGDFPNILSSHLLCATSEIGIQSNYNYLLKLFGPNSQLILQNLLN 855
Query: 707 RG--YLSS-DPSLDSSAKIFEYIGHEKMPSH---TISIRAIESERYEVIDMQSN----EV 756
YL S + + +++ G K + +IS+R S ++++++ N ++
Sbjct: 856 NNKIYLQSINNNNNNNNNNNNNNGLWKSNDYHHLSISLRG-GSGTNDIVNVKLNSINGDI 914
Query: 757 LEEIEESKAFFQVYEGAVYM-HQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHV 815
+E++ +S++ +++ G+++M H ++ N S I+ + +L T + +
Sbjct: 915 IEKVSKSQSITRLFPGSIFMTHNTESFR----NNSGPISHFEVLELSLNTTNNNK---NY 967
Query: 816 SGGNNAYATKIS 827
+ NN Y+ +
Sbjct: 968 NNNNNEYSNSFA 979
Score = 38 (18.4 bits), Expect = 1.3e-28, Sum P(2) = 1.3e-28
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 897 RSGLHAASHALLHVVPIYV 915
R LH H +L +P+ +
Sbjct: 1131 RVSLHTMIHQILSTIPLVI 1149
>UNIPROTKB|A5D786 [details] [associations]
symbol:RECQL4 "RECQL4 protein" species:9913 "Bos taurus"
[GO:0048705 "skeletal system morphogenesis" evidence=IEA]
[GO:0045875 "negative regulation of sister chromatid cohesion"
evidence=IEA] [GO:0043473 "pigmentation" evidence=IEA] [GO:0008284
"positive regulation of cell proliferation" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0008284 GO:GO:0003676 GO:GO:0006310
GO:GO:0048705 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043473 eggNOG:COG0514 GeneTree:ENSGT00550000074520
TIGRFAMs:TIGR00614 GO:GO:0008026 GO:GO:0045875 CTD:9401
HOGENOM:HOG000264957 HOVERGEN:HBG065925 KO:K10730
InterPro:IPR021110 Pfam:PF11719 OrthoDB:EOG4CJVGG EMBL:DAAA02037439
EMBL:BC140466 IPI:IPI00852560 RefSeq:NP_001091506.1
UniGene:Bt.27882 STRING:A5D786 Ensembl:ENSBTAT00000056581
GeneID:515472 KEGG:bta:515472 OMA:DMPEEAI NextBio:20871839
Uniprot:A5D786
Length = 1218
Score = 156 (60.0 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 48/163 (29%), Positives = 77/163 (47%)
Query: 476 LFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISE-VSYLFAEMVQHGLRCIAFCRS 534
L V W+ SVL T D+ + + P V+ L ++ + I +C
Sbjct: 664 LDVAWHLGVTEESVLRGPATIPDNLHLSVSSDRDPDQALVTLLRSDRFRALGSVIIYCHR 723
Query: 535 RKLCELVLSYTREIL---EETAPH--LVDSIC-VYRAGYVAEDRRRIERDFFGGKLCGVA 588
R+ E V + R L ++ PH ++++ Y AG + +RRR++R F G+L V
Sbjct: 724 REDTERVAALLRTCLCDAQDPGPHGRALEAVAEAYHAGLCSRERRRVQRAFMEGRLRMVV 783
Query: 589 ATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPS 631
AT A +G+D + LHLG P S + Q GR+GR +P+
Sbjct: 784 ATVAFGMGLDRPDVRAVLHLGLPPSFETYVQAVGRAGRDGQPA 826
Score = 86 (35.3 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 247 ALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVL 292
AL+ G Y Q +M L+G + ++ T +GKSLCY LP L
Sbjct: 486 ALEQLGHHAFYPGQERVVMRVLSGMSTLLVLPTGAGKSLCYQLPAL 531
>UNIPROTKB|Q81QF0 [details] [associations]
symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 132 (51.5 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 49/196 (25%), Positives = 89/196 (45%)
Query: 248 LKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSS-SALYM 306
L+ GI++ Q ++I L+GK+++ T +GK+L + LP+LE + + S AL +
Sbjct: 20 LRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDVQALIV 79
Query: 307 FPTKXXXXXXXXXXXXM-TKAFDASIDIGVYDG-DTTQKDRMWLRDNARLLITNPDMLHM 364
PT+ M + D ++ + +Y G D Q+ R L+ N +++ P L
Sbjct: 80 APTRELALQITTEIKKMLVQREDINV-LAIYGGQDVAQQLRK-LKGNTHIVVATPGRL-- 135
Query: 365 SILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRR 424
L + + + LSNL I +Y FL+ ++DE K +A I +
Sbjct: 136 --LDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTM-LFSATIPKD 192
Query: 425 LCRLCSHVYGSDPSFV 440
+ +L Y +P +
Sbjct: 193 IKKLAKR-YMDEPQMI 207
Score = 84 (34.6 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 25/100 (25%), Positives = 45/100 (45%)
Query: 561 CVYRAGYVAEDRR-RIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQ 619
C G + + +R R+ + F K+ + AT+ G+DV + + P + S
Sbjct: 271 CAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDVESYIH 330
Query: 620 QAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIE 659
+ GR+GR LA+ F D+ ++ EK +PI+
Sbjct: 331 RIGRTGRAGGSGLAI--TFVAAKDEKHLEEIEKTLGAPIQ 368
>TIGR_CMR|BA_2475 [details] [associations]
symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 132 (51.5 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 49/196 (25%), Positives = 89/196 (45%)
Query: 248 LKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSS-SALYM 306
L+ GI++ Q ++I L+GK+++ T +GK+L + LP+LE + + S AL +
Sbjct: 20 LRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDVQALIV 79
Query: 307 FPTKXXXXXXXXXXXXM-TKAFDASIDIGVYDG-DTTQKDRMWLRDNARLLITNPDMLHM 364
PT+ M + D ++ + +Y G D Q+ R L+ N +++ P L
Sbjct: 80 APTRELALQITTEIKKMLVQREDINV-LAIYGGQDVAQQLRK-LKGNTHIVVATPGRL-- 135
Query: 365 SILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRR 424
L + + + LSNL I +Y FL+ ++DE K +A I +
Sbjct: 136 --LDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTM-LFSATIPKD 192
Query: 425 LCRLCSHVYGSDPSFV 440
+ +L Y +P +
Sbjct: 193 IKKLAKR-YMDEPQMI 207
Score = 84 (34.6 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 25/100 (25%), Positives = 45/100 (45%)
Query: 561 CVYRAGYVAEDRR-RIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQ 619
C G + + +R R+ + F K+ + AT+ G+DV + + P + S
Sbjct: 271 CAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDVESYIH 330
Query: 620 QAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIE 659
+ GR+GR LA+ F D+ ++ EK +PI+
Sbjct: 331 RIGRTGRAGGSGLAI--TFVAAKDEKHLEEIEKTLGAPIQ 368
>UNIPROTKB|I3LFW3 [details] [associations]
symbol:RECQL5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0031965 "nuclear membrane" evidence=IEA] [GO:0016591
"DNA-directed RNA polymerase II, holoenzyme" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0031965
GO:GO:0003676 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016591 GeneTree:ENSGT00550000074520
TIGRFAMs:TIGR00614 GO:GO:0008026 EMBL:FP565693
Ensembl:ENSSSCT00000025315 OMA:DALIIMP Uniprot:I3LFW3
Length = 432
Score = 126 (49.4 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
Identities = 30/103 (29%), Positives = 55/103 (53%)
Query: 529 IAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVA 588
I +CR+R+ CE ++ E + V++ Y AG A +R ++ ++ GK+ +
Sbjct: 259 IVYCRTREACE-------QLAIELSARGVNAKA-YHAGLKAAERTLVQNEWMEGKVPVIV 310
Query: 589 ATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPS 631
AT + +G+D ++ H S+A +Q++GR+GR RPS
Sbjct: 311 ATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGRPS 353
Score = 81 (33.6 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
Identities = 24/53 (45%), Positives = 29/53 (54%)
Query: 245 KSALKST-GISKLYSHQAES-IMASLAG-KNVVVATMTSSGKSLCYNLPVLEA 294
+S LK G + ES IMA + G K+V V T +GKSLCY LP L A
Sbjct: 13 RSTLKKVFGFDSFKTPLQESAIMAVVKGDKDVFVCMPTGAGKSLCYQLPALLA 65
>UNIPROTKB|Q8EGU0 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 104 (41.7 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 46/213 (21%), Positives = 86/213 (40%)
Query: 451 EHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSP 510
+ ++L + +E ++ +P Q + + ++ + +K A N T+S
Sbjct: 156 DRMLDLGFVRDIEKVKRLIAPVHQTMLFSATYSDAVKQLSHKMLNQPQWVNVAENTTAST 215
Query: 511 ISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHL-VDSIC--VYRAGY 567
+ ++ Y + + L R+ LV + T+E E L +D I V+
Sbjct: 216 VEQLVYRVDKRRKAELLSELVGRNNWRQVLVFASTKECAEHLLQELTLDGISAGVFHGDK 275
Query: 568 VAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRR 627
R R+ DF GKL + AT+ G+D+ + + ++L P + GR+GR
Sbjct: 276 TQGARNRVLDDFKAGKLRVLVATDVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRA 335
Query: 628 ERPSLAVYVAFEGPLDQYFMKYPEKLF--KSPI 658
A+ +F P D + E L K P+
Sbjct: 336 GLSGRAI--SFVSPADDEMLAEIEALIGEKLPV 366
Score = 102 (41.0 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 35/139 (25%), Positives = 59/139 (42%)
Query: 246 SALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSS--- 302
+A+ G +L Q + I +L GK+++ T +GK+ + LPVLE L+ +
Sbjct: 14 NAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLEQLAAKPADKPLL 73
Query: 303 -ALYMFPTKXXXXXXXXXXXXMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDM 361
AL M PT+ ++ + VY G R + +L+ P
Sbjct: 74 RALVMTPTRELAIQVCANIQKYSQFLPLKT-LAVYGGANMNPQRKGVEQGVDILVATPGR 132
Query: 362 LHMSILPYHGQFSRILSNL 380
L I+ GQF+ LS++
Sbjct: 133 L-FDII---GQFNLDLSSV 147
>TIGR_CMR|SO_1501 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 104 (41.7 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 46/213 (21%), Positives = 86/213 (40%)
Query: 451 EHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSP 510
+ ++L + +E ++ +P Q + + ++ + +K A N T+S
Sbjct: 156 DRMLDLGFVRDIEKVKRLIAPVHQTMLFSATYSDAVKQLSHKMLNQPQWVNVAENTTAST 215
Query: 511 ISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHL-VDSIC--VYRAGY 567
+ ++ Y + + L R+ LV + T+E E L +D I V+
Sbjct: 216 VEQLVYRVDKRRKAELLSELVGRNNWRQVLVFASTKECAEHLLQELTLDGISAGVFHGDK 275
Query: 568 VAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRR 627
R R+ DF GKL + AT+ G+D+ + + ++L P + GR+GR
Sbjct: 276 TQGARNRVLDDFKAGKLRVLVATDVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRA 335
Query: 628 ERPSLAVYVAFEGPLDQYFMKYPEKLF--KSPI 658
A+ +F P D + E L K P+
Sbjct: 336 GLSGRAI--SFVSPADDEMLAEIEALIGEKLPV 366
Score = 102 (41.0 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 35/139 (25%), Positives = 59/139 (42%)
Query: 246 SALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSS--- 302
+A+ G +L Q + I +L GK+++ T +GK+ + LPVLE L+ +
Sbjct: 14 NAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLEQLAAKPADKPLL 73
Query: 303 -ALYMFPTKXXXXXXXXXXXXMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDM 361
AL M PT+ ++ + VY G R + +L+ P
Sbjct: 74 RALVMTPTRELAIQVCANIQKYSQFLPLKT-LAVYGGANMNPQRKGVEQGVDILVATPGR 132
Query: 362 LHMSILPYHGQFSRILSNL 380
L I+ GQF+ LS++
Sbjct: 133 L-FDII---GQFNLDLSSV 147
>UNIPROTKB|Q47WD5 [details] [associations]
symbol:CPS_4237 "RecQ domain protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514 TIGRFAMs:TIGR00614
GO:GO:0008026 HOGENOM:HOG000044388 KO:K03654 RefSeq:YP_270887.1
ProteinModelPortal:Q47WD5 STRING:Q47WD5 GeneID:3521770
KEGG:cps:CPS_4237 PATRIC:21471339 OMA:GHNFRPD
ProtClustDB:CLSK906704 BioCyc:CPSY167879:GI48-4247-MONOMER
Uniprot:Q47WD5
Length = 690
Score = 140 (54.3 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 30/92 (32%), Positives = 50/92 (54%)
Query: 540 LVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDV 599
+ L ++ E + + + C Y AG+ ++ R +I++DF GK+ + AT A +GID
Sbjct: 244 VTLQHSAETVAQYLKQQGINACAYHAGFDSDTRSQIQQDFMAGKIQVIVATIAFGMGIDK 303
Query: 600 GHIDVTLHLGFPGSIASLWQQAGRSGRRERPS 631
+I +H P SI + Q+ GR+GR PS
Sbjct: 304 SNIRFVIHYDLPKSIENYSQEIGRAGRDGLPS 335
Score = 69 (29.3 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 19/52 (36%), Positives = 26/52 (50%)
Query: 246 SALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSH 297
S L++ G Q ++I L G++ + T SGKSLCY L L L H
Sbjct: 16 SLLETFGFDGFRPGQEQTITQLLKGQSSLSIFPTGSGKSLCYQLTALH-LPH 66
>TIGR_CMR|CPS_4237 [details] [associations]
symbol:CPS_4237 "RecQ domain protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0004386 "helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514 TIGRFAMs:TIGR00614
GO:GO:0008026 HOGENOM:HOG000044388 KO:K03654 RefSeq:YP_270887.1
ProteinModelPortal:Q47WD5 STRING:Q47WD5 GeneID:3521770
KEGG:cps:CPS_4237 PATRIC:21471339 OMA:GHNFRPD
ProtClustDB:CLSK906704 BioCyc:CPSY167879:GI48-4247-MONOMER
Uniprot:Q47WD5
Length = 690
Score = 140 (54.3 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 30/92 (32%), Positives = 50/92 (54%)
Query: 540 LVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDV 599
+ L ++ E + + + C Y AG+ ++ R +I++DF GK+ + AT A +GID
Sbjct: 244 VTLQHSAETVAQYLKQQGINACAYHAGFDSDTRSQIQQDFMAGKIQVIVATIAFGMGIDK 303
Query: 600 GHIDVTLHLGFPGSIASLWQQAGRSGRRERPS 631
+I +H P SI + Q+ GR+GR PS
Sbjct: 304 SNIRFVIHYDLPKSIENYSQEIGRAGRDGLPS 335
Score = 69 (29.3 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 19/52 (36%), Positives = 26/52 (50%)
Query: 246 SALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSH 297
S L++ G Q ++I L G++ + T SGKSLCY L L L H
Sbjct: 16 SLLETFGFDGFRPGQEQTITQLLKGQSSLSIFPTGSGKSLCYQLTALH-LPH 66
>TIGR_CMR|BA_1505 [details] [associations]
symbol:BA_1505 "ATP-dependent DNA helicase RecQ"
species:198094 "Bacillus anthracis str. Ames" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614
GO:GO:0008026 HSSP:P15043 HOGENOM:HOG000044388 KO:K03654
OMA:DALIIMP RefSeq:NP_843957.1 RefSeq:YP_018128.2
RefSeq:YP_027663.1 ProteinModelPortal:Q81SY8 DNASU:1087356
EnsemblBacteria:EBBACT00000009666 EnsemblBacteria:EBBACT00000015103
EnsemblBacteria:EBBACT00000023330 GeneID:1087356 GeneID:2817068
GeneID:2848363 KEGG:ban:BA_1505 KEGG:bar:GBAA_1505 KEGG:bat:BAS1394
ProtClustDB:CLSK916267 BioCyc:BANT260799:GJAJ-1468-MONOMER
BioCyc:BANT261594:GJ7F-1530-MONOMER Uniprot:Q81SY8
Length = 509
Score = 133 (51.9 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 35/115 (30%), Positives = 55/115 (47%)
Query: 529 IAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVA 588
I +C SR E + Y R V + Y G E+R I++ F +L V
Sbjct: 231 IVYCSSRAWTERLTEYLRG-------KGVTGVAFYHGGMEHEERMLIQQQFMNNQLQLVI 283
Query: 589 ATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLD 643
T+A +G++ + +H +P +IAS Q+ GR+GR PS+A+ + PLD
Sbjct: 284 CTSAFGMGVNKANTRYIIHFHYPTNIASYLQEIGRAGRDGEPSIAILLC--SPLD 336
Score = 67 (28.6 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 252 GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVL 292
G S+ Q I L GK+V+ T GKS+CY P L
Sbjct: 12 GYSEFRPGQKGVITDLLEGKDVIAMLPTGRGKSMCYQFPGL 52
Score = 48 (22.0 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 864 VELYLP-KYS-YESQAVWIQVPQSVKAVVEQNFSFR 897
VE+ L KYS E+ WIQV + V Q F +R
Sbjct: 426 VEIRLRNKYSELENMKSWIQVKGCRREYVLQQFGYR 461
>UNIPROTKB|O94761 [details] [associations]
symbol:RECQL4 "ATP-dependent DNA helicase Q4" species:9606
"Homo sapiens" [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0032508
"DNA duplex unwinding" evidence=IDA] [GO:0043140 "ATP-dependent
3'-5' DNA helicase activity" evidence=IMP] [GO:0000733 "DNA strand
renaturation" evidence=IDA] [GO:0000405 "bubble DNA binding"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IDA] [GO:0006260
"DNA replication" evidence=IDA] [GO:0006281 "DNA repair"
evidence=TAS] [GO:0007275 "multicellular organismal development"
evidence=TAS] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0007275 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0006260 GO:GO:0008270 GO:GO:0006281 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 TIGRFAMs:TIGR00614 GO:GO:0000733 GO:GO:0000405
EMBL:AB006532 EMBL:AB026546 EMBL:DQ176868 EMBL:BC011602
EMBL:BC013277 IPI:IPI00014925 RefSeq:NP_004251.3 UniGene:Hs.31442
PDB:2KMU PDBsum:2KMU ProteinModelPortal:O94761 SMR:O94761
DIP:DIP-48475N IntAct:O94761 MINT:MINT-1432307 STRING:O94761
PhosphoSite:O94761 PaxDb:O94761 PRIDE:O94761 GeneID:9401
KEGG:hsa:9401 UCSC:uc003zdj.3 CTD:9401 GeneCards:GC08M145738
HGNC:HGNC:9949 MIM:218600 MIM:266280 MIM:268400 MIM:603780
neXtProt:NX_O94761 Orphanet:1225 Orphanet:3021 Orphanet:221016
PharmGKB:PA34316 HOGENOM:HOG000264957 HOVERGEN:HBG065925
InParanoid:O94761 KO:K10730 EvolutionaryTrace:O94761
GenomeRNAi:9401 NextBio:35219 CleanEx:HS_RECQL4
Genevestigator:O94761 GermOnline:ENSG00000160957 InterPro:IPR021110
Pfam:PF11719 Uniprot:O94761
Length = 1208
Score = 135 (52.6 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 29/69 (42%), Positives = 40/69 (57%)
Query: 563 YRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAG 622
Y AG + +RRR++R F G+L V AT A +G+D + LHLG P S S Q G
Sbjct: 744 YHAGMCSRERRRVQRAFMQGQLRVVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAVG 803
Query: 623 RSGRRERPS 631
R+GR +P+
Sbjct: 804 RAGRDGQPA 812
Score = 79 (32.9 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 247 ALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVL 292
AL+ G Q ++M L+G + ++ T +GKSLCY LP L
Sbjct: 472 ALEQLGHQAFRPGQERAVMRILSGISTLLVLPTGAGKSLCYQLPAL 517
>ASPGD|ASPL0000045206 [details] [associations]
symbol:musN species:162425 "Emericella nidulans"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0006281 "DNA repair" evidence=IMP] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00490 SMART:SM00956 GO:GO:0005524 GO:GO:0006260
EMBL:BN001307 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0005622 GO:GO:0006310 EMBL:AACD01000032
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
KO:K10901 Gene3D:1.10.150.80 TIGRFAMs:TIGR00614 RefSeq:XP_659691.1
ProteinModelPortal:G5EB35 EnsemblFungi:CADANIAT00008758
GeneID:2875310 KEGG:ani:AN2087.2 HOGENOM:HOG000182791 OMA:EERQWIM
Uniprot:G5EB35
Length = 1534
Score = 127 (49.8 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 37/113 (32%), Positives = 52/113 (46%)
Query: 527 RC-IAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLC 585
+C I +C SR CE V R A H Y AG AE R R ++ + G +
Sbjct: 929 KCGIVYCLSRNTCEKVAEALRTNYSIKAEH-------YHAGLDAETRARTQQRWQAGDVH 981
Query: 586 GVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAF 638
+ AT A +GID + +H P S+ +Q+ GR+GR R S Y+ F
Sbjct: 982 VIVATIAFGMGIDKPDVRFVIHHSIPKSLEGYYQETGRAGRDGRRS-GCYLYF 1033
Score = 89 (36.4 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 34/126 (26%), Positives = 55/126 (43%)
Query: 243 NTKSALKST-GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSS 301
+ K ALK + +Q E+I ++L+GK+ V T GKSLCY LP + + S
Sbjct: 687 DVKIALKERFHLRGFRPNQLEAIDSTLSGKDTFVLMPTGGGKSLCYQLPSVIS-SGSTRG 745
Query: 302 SALYMFPTKXXXXXXXXXXXXMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDM 361
L + P ++ I + +GDT ++R W+ L NP+
Sbjct: 746 VTLVISPL------LSLMQDQVSHLRQNKIKAYLINGDTPSEERQWIMST--LSSHNPET 797
Query: 362 LHMSIL 367
H+ +L
Sbjct: 798 -HIELL 802
>UNIPROTKB|Q9KVF0 [details] [associations]
symbol:VC_0196 "ATP-dependent DNA helicase RecQ"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043 KO:K03654
TIGRFAMs:TIGR01389 OMA:YCLSRAK ProtClustDB:PRK11057 PIR:E82351
RefSeq:NP_229853.2 ProteinModelPortal:Q9KVF0 SMR:Q9KVF0
DNASU:2614560 GeneID:2614560 KEGG:vch:VC0196 PATRIC:20079438
Uniprot:Q9KVF0
Length = 620
Score = 120 (47.3 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 47/176 (26%), Positives = 84/176 (47%)
Query: 496 DMDDTRNAANKTSSPISEV-SYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAP 554
D + R + P+S+V YL + Q G I +C SRK E++ T ++
Sbjct: 221 DRPNIRYMLVEKHKPVSQVIRYLETQRGQCG---IIYCGSRKKVEML---TEKLCGN--- 271
Query: 555 HLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSI 614
H+ Y AG A++R ++ F L V AT A +GI+ ++ +H P +I
Sbjct: 272 HI--RAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNI 329
Query: 615 ASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKV 670
S +Q+ GR+GR P+ A+ + ++ P D +++ L + P + ++HK+
Sbjct: 330 ESYYQETGRAGRDGLPAEAMML-YD-PADMNWLR--RMLDEKP-DGAQKQVESHKL 380
Score = 86 (35.3 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 23/63 (36%), Positives = 31/63 (49%)
Query: 231 AVLVEIPDALLDNTKSALKST-GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNL 289
A L+ AL + L G + Q E I A+LAG++ +V T GKSLCY +
Sbjct: 12 ATLMAESSALFATPERVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQI 71
Query: 290 PVL 292
P L
Sbjct: 72 PAL 74
>TIGR_CMR|VC_0196 [details] [associations]
symbol:VC_0196 "ATP-dependent DNA helicase RecQ"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] [GO:0006310 "DNA recombination"
evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043 KO:K03654
TIGRFAMs:TIGR01389 OMA:YCLSRAK ProtClustDB:PRK11057 PIR:E82351
RefSeq:NP_229853.2 ProteinModelPortal:Q9KVF0 SMR:Q9KVF0
DNASU:2614560 GeneID:2614560 KEGG:vch:VC0196 PATRIC:20079438
Uniprot:Q9KVF0
Length = 620
Score = 120 (47.3 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 47/176 (26%), Positives = 84/176 (47%)
Query: 496 DMDDTRNAANKTSSPISEV-SYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAP 554
D + R + P+S+V YL + Q G I +C SRK E++ T ++
Sbjct: 221 DRPNIRYMLVEKHKPVSQVIRYLETQRGQCG---IIYCGSRKKVEML---TEKLCGN--- 271
Query: 555 HLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSI 614
H+ Y AG A++R ++ F L V AT A +GI+ ++ +H P +I
Sbjct: 272 HI--RAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNI 329
Query: 615 ASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKV 670
S +Q+ GR+GR P+ A+ + ++ P D +++ L + P + ++HK+
Sbjct: 330 ESYYQETGRAGRDGLPAEAMML-YD-PADMNWLR--RMLDEKP-DGAQKQVESHKL 380
Score = 86 (35.3 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 23/63 (36%), Positives = 31/63 (49%)
Query: 231 AVLVEIPDALLDNTKSALKST-GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNL 289
A L+ AL + L G + Q E I A+LAG++ +V T GKSLCY +
Sbjct: 12 ATLMAESSALFATPERVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQI 71
Query: 290 PVL 292
P L
Sbjct: 72 PAL 74
>TAIR|locus:2127998 [details] [associations]
symbol:RecQl3 "AT4G35740" species:3702 "Arabidopsis
thaliana" [GO:0005524 "ATP binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS;IDA] [GO:0008152 "metabolic process"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IDA]
[GO:0009378 "four-way junction helicase activity" evidence=IDA]
[GO:0036310 "annealing helicase activity" evidence=IDA] [GO:0043138
"3'-5' DNA helicase activity" evidence=IDA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0046872
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
EMBL:AL161588 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
eggNOG:COG0514 KO:K10901 TIGRFAMs:TIGR00614 GO:GO:0036310
GO:GO:0009378 GO:GO:0008026 EMBL:AL031135 GO:GO:0043138 PIR:T04679
HSSP:P15043 EMBL:AJ404472 EMBL:AK229155 IPI:IPI00541767
IPI:IPI00545081 RefSeq:NP_195299.2 RefSeq:NP_849500.1
UniGene:At.20216 ProteinModelPortal:Q9FT72 SMR:Q9FT72 IntAct:Q9FT72
PaxDb:Q9FT72 PRIDE:Q9FT72 EnsemblPlants:AT4G35740.1 GeneID:829727
KEGG:ath:AT4G35740 TAIR:At4g35740 HOGENOM:HOG000239549
InParanoid:Q9FT72 OMA:YEVRYKD PhylomeDB:Q9FT72
ProtClustDB:CLSN2680292 Genevestigator:Q9FT72 Uniprot:Q9FT72
Length = 713
Score = 125 (49.1 bits), Expect = 2.8e-07, Sum P(4) = 2.8e-07
Identities = 33/116 (28%), Positives = 57/116 (49%)
Query: 537 LCELVLSYTREILEETAPHLVD---SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNAL 593
+C ++ R ++ + HL S Y AG ++ R + D+ K + AT A
Sbjct: 257 ICAIIYCLERTTCDDLSVHLSSIGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVATVAF 316
Query: 594 ELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKY 649
+GID + + H P S+ S +Q++GR+GR + PS +V + G D+ M+Y
Sbjct: 317 GMGIDKKDVRMVCHFNIPKSMESFYQESGRAGRDQLPSRSVL--YYGVDDRKKMEY 370
Score = 71 (30.1 bits), Expect = 2.8e-07, Sum P(4) = 2.8e-07
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 260 QAESIMASLAGKNVVVATMTSSGKSLCYNLPVL 292
Q E+I A ++G++ T GKS+CY +P L
Sbjct: 41 QLEAIQAVVSGRDCFCLMPTGGGKSICYQIPAL 73
Score = 55 (24.4 bits), Expect = 2.8e-07, Sum P(4) = 2.8e-07
Identities = 17/62 (27%), Positives = 29/62 (46%)
Query: 783 LVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISK---DQLTKTTAQAL 839
L K+L L K+ L ++A+ KY+ + + + + A + D LT+ Q L
Sbjct: 502 LSKKLGLDEKLVLLEQAEEKYYERNKQVKKSEKNAISEALRDSSKQRLLDALTRVL-QLL 560
Query: 840 AC 841
AC
Sbjct: 561 AC 562
Score = 44 (20.5 bits), Expect = 0.00011, Sum P(4) = 0.00011
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 232 VLVEIP-DALLDNTKSALKSTGISKLY--SHQAESI 264
VLV P AL++N ALK GI+ Y S QA +
Sbjct: 79 VLVVSPLIALMENQVMALKEKGIAAEYLSSTQATHV 114
Score = 40 (19.1 bits), Expect = 2.8e-07, Sum P(4) = 2.8e-07
Identities = 11/47 (23%), Positives = 21/47 (44%)
Query: 642 LDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIY 688
L+ + ++P + K + C Q LE+ + A+ H S I+
Sbjct: 408 LESFGEEFPVQQCKKTCDACKHPNQVAHCLEELMTTASRRHNSSRIF 454
Score = 39 (18.8 bits), Expect = 0.00034, Sum P(4) = 0.00034
Identities = 11/51 (21%), Positives = 25/51 (49%)
Query: 70 VLCPKVVQFANDDMESKNHDDSIVIINVS--TEERDKVEDNLGSGQKAISL 118
V+ P + N M K + ++ + T ++K+ ++L SG+ ++ L
Sbjct: 81 VVSPLIALMENQVMALKEKGIAAEYLSSTQATHVKNKIHEDLDSGKPSVRL 131
>UNIPROTKB|F1RSP7 [details] [associations]
symbol:RECQL4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
GO:GO:0006310 Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074520
TIGRFAMs:TIGR00614 GO:GO:0008026 InterPro:IPR021110 Pfam:PF11719
EMBL:CU468594 Ensembl:ENSSSCT00000006477 Uniprot:F1RSP7
Length = 1204
Score = 143 (55.4 bits), Expect = 3.1e-07, Sum P(3) = 3.1e-07
Identities = 40/111 (36%), Positives = 54/111 (48%)
Query: 529 IAFCRSRKLCELVLSYTREILEET--------APHLVDSICVYRAGYVAEDRRRIERDFF 580
I +C R+ E V + R L ET AP V Y AG + +R R++R F
Sbjct: 713 IIYCNRREDTERVAALLRTCLRETWALGPGGWAPEAVAE--AYHAGMCSRERWRVQRAFM 770
Query: 581 GGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPS 631
G+L V AT A +G+D + LHLG P S S Q GR+GR +P+
Sbjct: 771 EGRLRVVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAVGRAGRDGQPA 821
Score = 77 (32.2 bits), Expect = 3.1e-07, Sum P(3) = 3.1e-07
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 247 ALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVL 292
AL+ G Q +M L+G + ++ T GKSLCY LP L
Sbjct: 479 ALEQLGHQAFNPGQEHVVMRILSGMSTLLVLPTGGGKSLCYQLPAL 524
Score = 37 (18.1 bits), Expect = 3.1e-07, Sum P(3) = 3.1e-07
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 896 FRSGLHAASHALLHV 910
+R LH HAL+H+
Sbjct: 1180 WRKYLHLNFHALMHL 1194
>UNIPROTKB|K7GSZ9 [details] [associations]
symbol:RECQL4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
InterPro:IPR021110 Pfam:PF11719 EMBL:CU468594
Ensembl:ENSSSCT00000036186 Uniprot:K7GSZ9
Length = 1209
Score = 143 (55.4 bits), Expect = 3.2e-07, Sum P(3) = 3.2e-07
Identities = 40/111 (36%), Positives = 54/111 (48%)
Query: 529 IAFCRSRKLCELVLSYTREILEET--------APHLVDSICVYRAGYVAEDRRRIERDFF 580
I +C R+ E V + R L ET AP V Y AG + +R R++R F
Sbjct: 718 IIYCNRREDTERVAALLRTCLRETWALGPGGWAPEAVAE--AYHAGMCSRERWRVQRAFM 775
Query: 581 GGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPS 631
G+L V AT A +G+D + LHLG P S S Q GR+GR +P+
Sbjct: 776 EGRLRVVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAVGRAGRDGQPA 826
Score = 77 (32.2 bits), Expect = 3.2e-07, Sum P(3) = 3.2e-07
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 247 ALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVL 292
AL+ G Q +M L+G + ++ T GKSLCY LP L
Sbjct: 484 ALEQLGHQAFNPGQEHVVMRILSGMSTLLVLPTGGGKSLCYQLPAL 529
Score = 37 (18.1 bits), Expect = 3.2e-07, Sum P(3) = 3.2e-07
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 896 FRSGLHAASHALLHV 910
+R LH HAL+H+
Sbjct: 1185 WRKYLHLNFHALMHL 1199
>UNIPROTKB|F1RV44 [details] [associations]
symbol:RECQL4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048705 "skeletal system morphogenesis" evidence=IEA]
[GO:0045875 "negative regulation of sister chromatid cohesion"
evidence=IEA] [GO:0043473 "pigmentation" evidence=IEA] [GO:0008284
"positive regulation of cell proliferation" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0046872 GO:GO:0008284 GO:GO:0008270
GO:GO:0003676 GO:GO:0006310 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0048705 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043473 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0008026 GO:GO:0045875 InterPro:IPR021110 Pfam:PF11719
OMA:DMPEEAI EMBL:CU468594 Ensembl:ENSSSCT00000006463 Uniprot:F1RV44
Length = 1227
Score = 143 (55.4 bits), Expect = 3.3e-07, Sum P(3) = 3.3e-07
Identities = 40/111 (36%), Positives = 54/111 (48%)
Query: 529 IAFCRSRKLCELVLSYTREILEET--------APHLVDSICVYRAGYVAEDRRRIERDFF 580
I +C R+ E V + R L ET AP V Y AG + +R R++R F
Sbjct: 736 IIYCNRREDTERVAALLRTCLRETWALGPGGWAPEAVAE--AYHAGMCSRERWRVQRAFM 793
Query: 581 GGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPS 631
G+L V AT A +G+D + LHLG P S S Q GR+GR +P+
Sbjct: 794 EGRLRVVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAVGRAGRDGQPA 844
Score = 77 (32.2 bits), Expect = 3.3e-07, Sum P(3) = 3.3e-07
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 247 ALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVL 292
AL+ G Q +M L+G + ++ T GKSLCY LP L
Sbjct: 502 ALEQLGHQAFNPGQEHVVMRILSGMSTLLVLPTGGGKSLCYQLPAL 547
Score = 37 (18.1 bits), Expect = 3.3e-07, Sum P(3) = 3.3e-07
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 896 FRSGLHAASHALLHV 910
+R LH HAL+H+
Sbjct: 1203 WRKYLHLNFHALMHL 1217
>POMBASE|SPAC2G11.12 [details] [associations]
symbol:rqh1 "RecQ type DNA helicase Rqh1" species:4896
"Schizosaccharomyces pombe" [GO:0000723 "telomere maintenance"
evidence=IGI;IMP] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IGI] [GO:0000725
"recombinational repair" evidence=IGI] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IC] [GO:0006268 "DNA unwinding
involved in replication" evidence=ISO] [GO:0006974 "response to DNA
damage stimulus" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0009650 "UV protection"
evidence=IMP] [GO:0031422 "RecQ helicase-Topo III complex"
evidence=IDA] [GO:0031573 "intra-S DNA damage checkpoint"
evidence=IDA] [GO:0034065 "replication fork processing at rDNA
locus" evidence=IGI] [GO:0043007 "maintenance of rDNA"
evidence=IMP] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IDA] [GO:0043596 "nuclear replication fork"
evidence=IC] [GO:0045950 "negative regulation of mitotic
recombination" evidence=IMP] [GO:0071140 "resolution of mitotic
recombination intermediates" evidence=IMP] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 PomBase:SPAC2G11.12 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0043596 GO:GO:0000724 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723
GO:GO:0007131 eggNOG:COG0514 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0045950 GO:GO:0031573
GO:GO:0009650 GO:GO:0006268 EMBL:Y09426 PIR:S62467
RefSeq:NP_593092.1 ProteinModelPortal:Q09811 STRING:Q09811
EnsemblFungi:SPAC2G11.12.1 GeneID:2541620 KEGG:spo:SPAC2G11.12
OrthoDB:EOG4XSPZ5 NextBio:20802714 GO:GO:0031422 GO:GO:0034065
GO:GO:0071140 Uniprot:Q09811
Length = 1328
Score = 133 (51.9 bits), Expect = 5.9e-07, Sum P(3) = 5.9e-07
Identities = 33/103 (32%), Positives = 51/103 (49%)
Query: 529 IAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVA 588
I +C SR CE V + R A H Y AG +R+RI+ ++ G +
Sbjct: 746 IIYCLSRTSCEQVAAKLRNDYGLKAWH-------YHAGLEKVERQRIQNEWQSGSYKIIV 798
Query: 589 ATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPS 631
AT A +G+D G + +H FP S+ +Q+ GR+GR +P+
Sbjct: 799 ATIAFGMGVDKGDVRFVIHHSFPKSLEGYYQETGRAGRDGKPA 841
Score = 86 (35.3 bits), Expect = 5.9e-07, Sum P(3) = 5.9e-07
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 259 HQAESIMASLAGKNVVVATMTSSGKSLCYNLP-VLE 293
+Q E+I +L+GK+V + T GKSLCY LP V+E
Sbjct: 523 NQLEAINGTLSGKDVFILMPTGGGKSLCYQLPAVIE 558
Score = 37 (18.1 bits), Expect = 5.9e-07, Sum P(3) = 5.9e-07
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 384 AFSLVTTEVYLIFLFIRFVVIDEAH 408
A + V +Y L R +VIDEAH
Sbjct: 631 AITRVLKSLYERKLLAR-IVIDEAH 654
>FB|FBgn0002906 [details] [associations]
symbol:Blm "Bloom syndrome helicase ortholog" species:7227
"Drosophila melanogaster" [GO:0006302 "double-strand break repair"
evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0006974 "response to DNA damage stimulus"
evidence=IGI;IMP] [GO:0004386 "helicase activity" evidence=ISS]
[GO:0003678 "DNA helicase activity" evidence=ISS] [GO:0000731 "DNA
synthesis involved in DNA repair" evidence=IMP] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0045003 "double-strand break repair via synthesis-dependent
strand annealing" evidence=IMP] [GO:0032508 "DNA duplex unwinding"
evidence=IDA] [GO:0000732 "strand displacement" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0000403 "Y-form DNA binding" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0000733 "DNA strand renaturation"
evidence=IDA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IDA] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IMP] [GO:0007131 "reciprocal
meiotic recombination" evidence=IMP] [GO:1901291 "negative
regulation of double-strand break repair via single-strand
annealing" evidence=IMP] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00490 SMART:SM00956 EMBL:AE014297
GO:GO:0005524 GO:GO:0005634 GO:GO:0006260 Gene3D:1.10.10.10
InterPro:IPR011991 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0007131 GO:GO:0045003 eggNOG:COG0514
GeneTree:ENSGT00550000074520 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 EMBL:U92536 RefSeq:NP_524319.2
UniGene:Dm.2444 ProteinModelPortal:Q9VGI8 SMR:Q9VGI8 DIP:DIP-23386N
MINT:MINT-784091 STRING:Q9VGI8 PaxDb:Q9VGI8 PRIDE:Q9VGI8
EnsemblMetazoa:FBtr0082434 GeneID:41366 KEGG:dme:Dmel_CG6920
CTD:41366 FlyBase:FBgn0002906 InParanoid:Q9VGI8 OMA:KISSSAR
OrthoDB:EOG4JDFNV PhylomeDB:Q9VGI8 ChiTaRS:BLM GenomeRNAi:41366
NextBio:823498 Bgee:Q9VGI8 GermOnline:CG6920 GO:GO:0000403
GO:GO:0000733 GO:GO:0000731 GO:GO:1901291 GO:GO:0000732
Uniprot:Q9VGI8
Length = 1487
Score = 136 (52.9 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 44/160 (27%), Positives = 71/160 (44%)
Query: 506 KTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRA 565
K S + ++S QH I +C SRK C+ E ++ V ++ Y A
Sbjct: 940 KGVSTLDDISRYIRSKPQH-FSGIIYCLSRKECD-------ETSKKMCKDGVRAVS-YHA 990
Query: 566 GYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSG 625
G DR ++D+ GK+ + AT A +GID + LH P SI +Q+AGR+G
Sbjct: 991 GLTDTDRESRQKDWLTGKMRVICATVAFGMGIDKPDVRFVLHYSLPKSIEGYYQEAGRAG 1050
Query: 626 RR-ERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHID 664
R + +Y + L M +K + ++ H+D
Sbjct: 1051 RDGDVADCILYYNYSDMLRIKKMLDSDKALQYNVKKIHVD 1090
Score = 80 (33.2 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 250 STGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVL 292
S G+ +Q + I A+L G + V T GKSLCY LP +
Sbjct: 732 SFGLKSFRPNQLQVINATLLGNDCFVLMPTGGGKSLCYQLPAI 774
Score = 37 (18.1 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 813 IHVSGGNNAYATKISKDQLTKTTA 836
I+ SG + Y T + KTT+
Sbjct: 1421 IYKSGASKRYKTSTTSPAARKTTS 1444
>UNIPROTKB|J3KTQ2 [details] [associations]
symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614
GO:GO:0008026 EMBL:AC087749 HGNC:HGNC:9950 ChiTaRS:RECQL5
Ensembl:ENST00000578201 Uniprot:J3KTQ2
Length = 480
Score = 118 (46.6 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 29/97 (29%), Positives = 49/97 (50%)
Query: 538 CELVLSYTREILEETAPHLVD---SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALE 594
C +V TRE E+ A L + Y AG A +R ++ D+ K+ + AT +
Sbjct: 261 CGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEEKVPVIVATISFG 320
Query: 595 LGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPS 631
+G+D ++ H S+A +Q++GR+GR +PS
Sbjct: 321 MGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPS 357
Score = 76 (31.8 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 23/53 (43%), Positives = 28/53 (52%)
Query: 245 KSALKST-GISKLYSHQAESI-MASLAG-KNVVVATMTSSGKSLCYNLPVLEA 294
+S LK G + ES MA + G K+V V T +GKSLCY LP L A
Sbjct: 17 RSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALLA 69
>TAIR|locus:2029799 [details] [associations]
symbol:AT1G27880 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;ISS] [GO:0042631 "cellular response
to water deprivation" evidence=IEP] [GO:0006260 "DNA replication"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0008283 "cell proliferation" evidence=RCA] [GO:0051567 "histone
H3-K9 methylation" evidence=RCA] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 EMBL:AC079280 GO:GO:0006310
GO:GO:0042631 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
eggNOG:COG0514 TIGRFAMs:TIGR00614 GO:GO:0008026 HSSP:P15043
HOGENOM:HOG000264957 KO:K10730 EMBL:AJ421618 EMBL:AK226619
IPI:IPI00519923 RefSeq:NP_174109.2 UniGene:At.40984
ProteinModelPortal:Q0WVW7 SMR:Q0WVW7 PaxDb:Q0WVW7 PRIDE:Q0WVW7
EnsemblPlants:AT1G27880.1 GeneID:839681 KEGG:ath:AT1G27880
KEGG:dosa:Os04t0486800-01 TAIR:At1g27880 InParanoid:Q0WVW7
OMA:THFWGRY PhylomeDB:Q0WVW7 ProtClustDB:CLSN2680265
Genevestigator:Q0WVW7 Uniprot:Q0WVW7
Length = 911
Score = 126 (49.4 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 27/69 (39%), Positives = 38/69 (55%)
Query: 563 YRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAG 622
Y +G A+DR RI+ F K+ V AT A +G+D G + +H PGS+ Q+ G
Sbjct: 516 YHSGLPAKDRVRIQESFCSNKIRVVVATVAFGMGLDKGDVGAVIHFSVPGSMEEYVQEIG 575
Query: 623 RSGRRERPS 631
R+GR R S
Sbjct: 576 RAGRDGRLS 584
Score = 81 (33.6 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 30/91 (32%), Positives = 41/91 (45%)
Query: 204 LEMVEHLRKGIGSQ--GQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQA 261
LE L+K I + G + VED A AV E D L TK G Q
Sbjct: 220 LEEESDLQKQIEDEANGFISSVED--AILAVKTEASDENL--TKLLNLVYGYDSFRDGQL 275
Query: 262 ESIMASLAGKNVVVATMTSSGKSLCYNLPVL 292
++I L G + ++ T +GKSLCY +P +
Sbjct: 276 QAIKMILGGSSTMLVLPTGAGKSLCYQIPAM 306
Score = 39 (18.8 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 392 VYLIFLFIRFVVIDEAH 408
++ + L + VV+DEAH
Sbjct: 377 MFRMSLSVSLVVVDEAH 393
>TAIR|locus:2127043 [details] [associations]
symbol:RH8 "RNAhelicase-like 8" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0016032 "viral reproduction" evidence=IMP] [GO:0019048
"virus-host interaction" evidence=IPI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0019048 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006417
GO:GO:0006397 GO:GO:0003723 EMBL:AF058919 EMBL:AL161472
GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
KO:K12614 InterPro:IPR014014 PROSITE:PS51195 OMA:QFMEKHL
ProtClustDB:CLSN2683443 EMBL:AJ010460 EMBL:AY080837 EMBL:AY113985
IPI:IPI00531108 PIR:T01230 PIR:T51741 RefSeq:NP_191975.2
RefSeq:NP_849535.1 UniGene:At.25593 UniGene:At.67100
UniGene:At.71300 ProteinModelPortal:Q8RXK6 SMR:Q8RXK6 STRING:Q8RXK6
PaxDb:Q8RXK6 PRIDE:Q8RXK6 EnsemblPlants:AT4G00660.1
EnsemblPlants:AT4G00660.2 GeneID:828042 KEGG:ath:AT4G00660
GeneFarm:919 TAIR:At4g00660 InParanoid:Q8RXK6 PhylomeDB:Q8RXK6
Genevestigator:Q8RXK6 GermOnline:AT4G00660 Uniprot:Q8RXK6
Length = 505
Score = 100 (40.3 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 29/101 (28%), Positives = 47/101 (46%)
Query: 547 EILEETAPHLVDSICVY-RAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVT 605
E+L + L S C Y A + + R R+ DF G + T+ GID+ ++V
Sbjct: 382 ELLAKKITELGYS-CFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVV 440
Query: 606 LHLGFPGSIASLWQQAGRSGRRERPSLAV-YVAFEGPLDQY 645
++ FP + + + GRSGR LAV + +E + Y
Sbjct: 441 INFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLY 481
Score = 95 (38.5 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 36/139 (25%), Positives = 58/139 (41%)
Query: 224 EDISARKAVLVEIPDALLDNTK-SALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSG 282
ED++A K E D L + G + Q ESI +L G++++ +G
Sbjct: 123 EDVTATKGN--EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTG 180
Query: 283 KSLCYNLPVLEALSHDLSS-SALYMFPTKXXXXXXXXXXXXMTKAFDASIDIGVYDGDTT 341
K+ + +PVLE + D + A+ + PT+ + K I + V G T+
Sbjct: 181 KTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHL--KIQVMVTTGGTS 238
Query: 342 QKDR-MWLRDNARLLITNP 359
KD M L LL+ P
Sbjct: 239 LKDDIMRLYQPVHLLVGTP 257
>WB|WBGene00001865 [details] [associations]
symbol:him-6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0051307 "meiotic chromosome separation" evidence=IMP]
[GO:0051276 "chromosome organization" evidence=IGI] [GO:0007059
"chromosome segregation" evidence=IGI] [GO:0007126 "meiosis"
evidence=IGI] [GO:0007067 "mitosis" evidence=IGI] [GO:0007131
"reciprocal meiotic recombination" evidence=IMP] [GO:0000077 "DNA
damage checkpoint" evidence=IMP] [GO:0010165 "response to X-ray"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0019899 "enzyme binding" evidence=IPI]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0005634 GO:GO:0008340 GO:GO:0000077 GO:GO:0043066
GO:GO:0007067 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0010165 GO:GO:0051276
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GO:GO:0007131 EMBL:AY095296 EMBL:Z83123 PIR:T24415
RefSeq:NP_502390.2 UniGene:Cel.5990 ProteinModelPortal:O18017
SMR:O18017 IntAct:O18017 MINT:MINT-227232 STRING:O18017
PaxDb:O18017 EnsemblMetazoa:T04A11.6 GeneID:178201
KEGG:cel:CELE_T04A11.6 UCSC:T04A11.6.1 CTD:178201 WormBase:T04A11.6
eggNOG:COG0514 GeneTree:ENSGT00550000074520 HOGENOM:HOG000022124
InParanoid:O18017 KO:K10901 OMA:PEDANDS NextBio:900142
GO:GO:0051307 Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
Uniprot:O18017
Length = 988
Score = 117 (46.2 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 36/103 (34%), Positives = 49/103 (47%)
Query: 529 IAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVA 588
I +C SRK CE V + +L T L S VY AG R ++R + K +
Sbjct: 473 IVYCLSRKECETV----QMML--TKAGL--SAEVYHAGLNDNLRVSVQRSWIANKFDVIC 524
Query: 589 ATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPS 631
AT A +GID + +H P SI +Q+ GR+GR PS
Sbjct: 525 ATIAFGMGIDKPDVRFVIHYSLPKSIEGYYQETGRAGRDGMPS 567
Score = 84 (34.6 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 224 EDISARKAVL-VEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSG 282
E+ S +L ++ L D KS G ++ Q + I+++L G + V T +G
Sbjct: 218 EEFSDEVGLLGADMNKELYDTLKSKF---GFNQFRHRQKQCILSTLMGHDTFVLMPTGAG 274
Query: 283 KSLCYNLPVL 292
KSLCY LP +
Sbjct: 275 KSLCYQLPAV 284
>TIGR_CMR|CPS_1418 [details] [associations]
symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
Length = 401
Score = 110 (43.8 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 35/138 (25%), Positives = 60/138 (43%)
Query: 246 SALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSS--- 302
+A+ G +K + Q ++I LAGK+++ A T +GK+ + LP+LE L+ +
Sbjct: 14 NAIADLGYTKPTAIQQKAIPVVLAGKDIIAAAQTGTGKTASFVLPLLEQLNSQYKETGKK 73
Query: 303 -------ALYMFPTKXXXXXXXXXXXXMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLL 355
AL + PT+ K D S + +Y G Q+ + L +L
Sbjct: 74 LRAKRIRALILVPTRELAVQVEASISQYAKYLDIS-SMAMYGGVDAQEQKQRLIWGVDIL 132
Query: 356 ITNP----DMLHMSILPY 369
+ P DM H +L +
Sbjct: 133 VATPGRLLDMTHQRVLHF 150
Score = 80 (33.2 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 569 AED-RRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGR 626
A+D R +I DF GK+ + AT G+D+G + ++ P + + GR+GR
Sbjct: 283 AQDIREKILNDFKSGKIKFLVATAIAARGLDIGELSRVINYDLPAQVDDYIHRIGRTGR 341
>WB|WBGene00000479 [details] [associations]
symbol:cgh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0051729 "germline cell cycle switching, mitotic
to meiotic cell cycle" evidence=IMP] [GO:0008219 "cell death"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0010467 "gene expression" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0043066 "negative
regulation of apoptotic process" evidence=IMP] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0043186 "P granule" evidence=IDA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IDA] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0017148 "negative regulation of translation"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040007
GO:GO:0006915 GO:GO:0010467 GO:GO:0016071 GO:GO:0043066
GO:GO:0030154 GO:GO:0007052 GO:GO:0002119 GO:GO:0017148
GO:GO:0048477 GO:GO:0007283 GO:GO:0051729 GO:GO:0003723
GO:GO:0040035 GO:GO:0000932 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026 EMBL:FO080423
RefSeq:NP_498646.1 ProteinModelPortal:Q95YF3 SMR:Q95YF3
DIP:DIP-25457N IntAct:Q95YF3 MINT:MINT-250782 STRING:Q95YF3
PaxDb:Q95YF3 EnsemblMetazoa:C07H6.5.1 EnsemblMetazoa:C07H6.5.2
GeneID:176061 KEGG:cel:CELE_C07H6.5 UCSC:C07H6.5.1 CTD:176061
WormBase:C07H6.5 eggNOG:COG0513 GeneTree:ENSGT00530000063986
HOGENOM:HOG000268797 InParanoid:Q95YF3 KO:K12614 OMA:YSHARMK
NextBio:890944 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
Uniprot:Q95YF3
Length = 430
Score = 107 (42.7 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 42/157 (26%), Positives = 77/157 (49%)
Query: 529 IAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRR-RIERDFFGGKLCGV 587
I FC S + EL+ ++I E + C Y +A++ R R+ DF G +
Sbjct: 284 IIFCNSTQRVELL---AKKITE------IGYSCYYIHSKMAQNHRNRVFHDFRQGNCRNL 334
Query: 588 AATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAV-YVAFEGPLDQYF 646
++ L GID+ ++V ++ FP + + + GRSGR +A+ + +E D++
Sbjct: 335 VCSDLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAINLITYE---DRHT 391
Query: 647 MKYPEKLFKSPIECCH--IDAQNHKVLEQHLVCAALE 681
++ E+ ++ IE +D + + V +Q LV AA E
Sbjct: 392 LRRIEQELRTRIEPIPKTVDPKLY-VADQQLVDAADE 427
Score = 84 (34.6 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 35/168 (20%), Positives = 69/168 (41%)
Query: 197 DKSQLLPLEMV-EHLRKGIG--SQGQMVHVEDISARKAVLVEIPDALLD-NTKSALKSTG 252
++ Q++P E+ + G+ ++ + D++ K V E D L + + G
Sbjct: 5 EQQQIVPANNGDENWKAGLNLPAKDRRFKTADVTDTKGV--EFEDFCLGRDLLMGIFEKG 62
Query: 253 ISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSS-SALYMFPTKX 311
K Q SI +L G++++ +GK+ Y +PV+E + L + A+ + PT+
Sbjct: 63 WEKPSPIQEASIGVALTGQDILARAKNGTGKTGAYCIPVIEKIQPALKAIQAMVIVPTRE 122
Query: 312 XXXXXXXXXXXMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNP 359
++K + + G + D M L L+I P
Sbjct: 123 LALQTSQICVELSKHIQLKVMVTT-GGTDLRDDIMRLNGTVHLVIATP 169
>UNIPROTKB|Q95YF3 [details] [associations]
symbol:cgh-1 "ATP-dependent RNA helicase cgh-1"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040007
GO:GO:0006915 GO:GO:0010467 GO:GO:0016071 GO:GO:0043066
GO:GO:0030154 GO:GO:0007052 GO:GO:0002119 GO:GO:0017148
GO:GO:0048477 GO:GO:0007283 GO:GO:0051729 GO:GO:0003723
GO:GO:0040035 GO:GO:0000932 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026 EMBL:FO080423
RefSeq:NP_498646.1 ProteinModelPortal:Q95YF3 SMR:Q95YF3
DIP:DIP-25457N IntAct:Q95YF3 MINT:MINT-250782 STRING:Q95YF3
PaxDb:Q95YF3 EnsemblMetazoa:C07H6.5.1 EnsemblMetazoa:C07H6.5.2
GeneID:176061 KEGG:cel:CELE_C07H6.5 UCSC:C07H6.5.1 CTD:176061
WormBase:C07H6.5 eggNOG:COG0513 GeneTree:ENSGT00530000063986
HOGENOM:HOG000268797 InParanoid:Q95YF3 KO:K12614 OMA:YSHARMK
NextBio:890944 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
Uniprot:Q95YF3
Length = 430
Score = 107 (42.7 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 42/157 (26%), Positives = 77/157 (49%)
Query: 529 IAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRR-RIERDFFGGKLCGV 587
I FC S + EL+ ++I E + C Y +A++ R R+ DF G +
Sbjct: 284 IIFCNSTQRVELL---AKKITE------IGYSCYYIHSKMAQNHRNRVFHDFRQGNCRNL 334
Query: 588 AATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAV-YVAFEGPLDQYF 646
++ L GID+ ++V ++ FP + + + GRSGR +A+ + +E D++
Sbjct: 335 VCSDLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAINLITYE---DRHT 391
Query: 647 MKYPEKLFKSPIECCH--IDAQNHKVLEQHLVCAALE 681
++ E+ ++ IE +D + + V +Q LV AA E
Sbjct: 392 LRRIEQELRTRIEPIPKTVDPKLY-VADQQLVDAADE 427
Score = 84 (34.6 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 35/168 (20%), Positives = 69/168 (41%)
Query: 197 DKSQLLPLEMV-EHLRKGIG--SQGQMVHVEDISARKAVLVEIPDALLD-NTKSALKSTG 252
++ Q++P E+ + G+ ++ + D++ K V E D L + + G
Sbjct: 5 EQQQIVPANNGDENWKAGLNLPAKDRRFKTADVTDTKGV--EFEDFCLGRDLLMGIFEKG 62
Query: 253 ISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSS-SALYMFPTKX 311
K Q SI +L G++++ +GK+ Y +PV+E + L + A+ + PT+
Sbjct: 63 WEKPSPIQEASIGVALTGQDILARAKNGTGKTGAYCIPVIEKIQPALKAIQAMVIVPTRE 122
Query: 312 XXXXXXXXXXXMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNP 359
++K + + G + D M L L+I P
Sbjct: 123 LALQTSQICVELSKHIQLKVMVTT-GGTDLRDDIMRLNGTVHLVIATP 169
>MGI|MGI:1931028 [details] [associations]
symbol:Recql4 "RecQ protein-like 4" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000405 "bubble DNA binding" evidence=ISO] [GO:0000733 "DNA
strand renaturation" evidence=ISO] [GO:0001501 "skeletal system
development" evidence=IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006260
"DNA replication" evidence=ISO] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0032508 "DNA duplex unwinding" evidence=ISO] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
[GO:0043473 "pigmentation" evidence=IMP] [GO:0045875 "negative
regulation of sister chromatid cohesion" evidence=IMP] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0048705 "skeletal system
morphogenesis" evidence=IMP] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 MGI:MGI:1931028 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0046872 GO:GO:0008284
GO:GO:0006260 GO:GO:0008270 GO:GO:0003676 GO:GO:0006310
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0048705 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043473 eggNOG:COG0514
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
GO:GO:0045875 CTD:9401 HOGENOM:HOG000264957 HOVERGEN:HBG065925
KO:K10730 InterPro:IPR021110 Pfam:PF11719 EMBL:AB039882
EMBL:AB175741 EMBL:AB042529 IPI:IPI00119366 IPI:IPI00462416
RefSeq:NP_478121.2 UniGene:Mm.18373 ProteinModelPortal:Q75NR7
SMR:Q75NR7 IntAct:Q75NR7 STRING:Q75NR7 PhosphoSite:Q75NR7
PRIDE:Q75NR7 DNASU:79456 Ensembl:ENSMUST00000036852 GeneID:79456
KEGG:mmu:79456 UCSC:uc007wlv.1 OrthoDB:EOG4CJVGG NextBio:349927
Bgee:Q75NR7 CleanEx:MM_RECQL4 Genevestigator:Q75NR7
GermOnline:ENSMUSG00000033762 Uniprot:Q75NR7
Length = 1216
Score = 130 (50.8 bits), Expect = 2.9e-06, Sum P(3) = 2.9e-06
Identities = 28/69 (40%), Positives = 40/69 (57%)
Query: 563 YRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAG 622
Y AG +++RRR+++ F G L V AT A +G+D + LHLG P S S Q G
Sbjct: 766 YHAGMSSQERRRVQQAFMRGHLRMVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAIG 825
Query: 623 RSGRRERPS 631
R+GR +P+
Sbjct: 826 RAGRDGKPA 834
Score = 80 (33.2 bits), Expect = 2.9e-06, Sum P(3) = 2.9e-06
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 247 ALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVL 292
AL+ G Q +IM L+G + ++ T +GKSLCY LP L
Sbjct: 489 ALERLGYRAFRPGQERAIMRILSGISTLLVLPTGAGKSLCYQLPAL 534
Score = 38 (18.4 bits), Expect = 2.9e-06, Sum P(3) = 2.9e-06
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 890 VEQNFSFRSGLHAASHALLHV 910
+++ F +R LH HAL+H+
Sbjct: 1187 LDRRF-WRKYLHLDFHALMHL 1206
>UNIPROTKB|Q8EEK1 [details] [associations]
symbol:SO_2380 "ATP-dependent DNA helicase RecQ family"
species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614
GO:GO:0008026 HSSP:P15043 HOGENOM:HOG000044388 KO:K03654
OMA:GHNFRPD ProtClustDB:CLSK906704 RefSeq:NP_717970.1
ProteinModelPortal:Q8EEK1 GeneID:1170099 KEGG:son:SO_2380
PATRIC:23524381 Uniprot:Q8EEK1
Length = 654
Score = 120 (47.3 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 32/96 (33%), Positives = 49/96 (51%)
Query: 549 LEETAPHLVDSIC-------VYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGH 601
L+ TA + +C Y AG+ + R++I+ DF G+ V AT A +GID +
Sbjct: 247 LQHTAEEVASQLCSMGFVAQAYHAGFDDDKRQQIQHDFMLGQTQIVVATIAFGMGIDKSN 306
Query: 602 IDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVA 637
I +H P SI + Q+ GR+GR + S V +A
Sbjct: 307 IRFVIHYDLPKSIENYCQEIGRAGRDGQLSHCVTLA 342
Score = 75 (31.5 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 252 GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSH 297
G S+ Q E I LAG++ + T SGKSLCY L+ L H
Sbjct: 23 GFSEFRPGQGEVITQLLAGQSSLAIFPTGSGKSLCYQFTALQ-LPH 67
>TIGR_CMR|SO_2380 [details] [associations]
symbol:SO_2380 "RecQ domain protein" species:211586
"Shewanella oneidensis MR-1" [GO:0003674 "molecular_function"
evidence=ND] [GO:0006310 "DNA recombination" evidence=ISS]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614 GO:GO:0008026
HSSP:P15043 HOGENOM:HOG000044388 KO:K03654 OMA:GHNFRPD
ProtClustDB:CLSK906704 RefSeq:NP_717970.1 ProteinModelPortal:Q8EEK1
GeneID:1170099 KEGG:son:SO_2380 PATRIC:23524381 Uniprot:Q8EEK1
Length = 654
Score = 120 (47.3 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 32/96 (33%), Positives = 49/96 (51%)
Query: 549 LEETAPHLVDSIC-------VYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGH 601
L+ TA + +C Y AG+ + R++I+ DF G+ V AT A +GID +
Sbjct: 247 LQHTAEEVASQLCSMGFVAQAYHAGFDDDKRQQIQHDFMLGQTQIVVATIAFGMGIDKSN 306
Query: 602 IDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVA 637
I +H P SI + Q+ GR+GR + S V +A
Sbjct: 307 IRFVIHYDLPKSIENYCQEIGRAGRDGQLSHCVTLA 342
Score = 75 (31.5 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 252 GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSH 297
G S+ Q E I LAG++ + T SGKSLCY L+ L H
Sbjct: 23 GFSEFRPGQGEVITQLLAGQSSLAIFPTGSGKSLCYQFTALQ-LPH 67
>TAIR|locus:2050715 [details] [associations]
symbol:AT2G45810 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005829
"cytosol" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006417 GO:GO:0006397
GO:GO:0003723 GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC004665 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 KO:K12614 InterPro:IPR014014
PROSITE:PS51195 OMA:HIDPARF ProtClustDB:CLSN2683443 EMBL:AY039862
EMBL:BT002709 EMBL:AJ010459 IPI:IPI00528597 PIR:T02466 PIR:T51740
RefSeq:NP_182105.1 UniGene:At.46 ProteinModelPortal:Q94BV4
SMR:Q94BV4 IntAct:Q94BV4 STRING:Q94BV4 PaxDb:Q94BV4 PRIDE:Q94BV4
EnsemblPlants:AT2G45810.1 GeneID:819189 KEGG:ath:AT2G45810
GeneFarm:917 TAIR:At2g45810 InParanoid:Q94BV4 PhylomeDB:Q94BV4
Genevestigator:Q94BV4 GermOnline:AT2G45810 Uniprot:Q94BV4
Length = 528
Score = 106 (42.4 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 32/101 (31%), Positives = 46/101 (45%)
Query: 547 EILEETAPHLVDSICVY-RAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVT 605
E+L + L S C Y A V + R R+ DF G + T+ GID+ ++V
Sbjct: 405 ELLAKKITELGYS-CFYIHAKMVQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVV 463
Query: 606 LHLGFPGSIASLWQQAGRSGRRERPSLAV-YVAFEGPLDQY 645
++ FP + S + GRSGR LAV V +E Y
Sbjct: 464 INFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMY 504
Score = 87 (35.7 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 34/139 (24%), Positives = 59/139 (42%)
Query: 224 EDISARKAVLVEIPDALLD-NTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSG 282
ED++A K E D L + + G K Q ESI +L G +++ +G
Sbjct: 146 EDVTATKGN--EFEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTG 203
Query: 283 KSLCYNLPVLEALSHDLSS-SALYMFPTKXXXXXXXXXXXXMTKAFDASIDIGVYDGDTT 341
K+ + +P LE + + + A+ + PT+ ++K I++ V G T+
Sbjct: 204 KTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQVCKELSKYL--KIEVMVTTGGTS 261
Query: 342 QKDR-MWLRDNARLLITNP 359
+D M L LL+ P
Sbjct: 262 LRDDIMRLYQPVHLLVGTP 280
>UNIPROTKB|Q81JK1 [details] [associations]
symbol:BAS5307 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 100 (40.3 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 36/121 (29%), Positives = 55/121 (45%)
Query: 528 CIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGV 587
CI FCR+++ + V Y R++ P D I G V EDR + DF GK +
Sbjct: 245 CIIFCRTQENVDHV--Y-RQLDRVNYP--CDKI---HGGMVQEDRFGVMDDFRKGKFRYL 296
Query: 588 AATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFM 647
AT+ GID+ +I ++ P S + GR+GR A+ F P + F+
Sbjct: 297 VATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAI--TFITPYEDRFL 354
Query: 648 K 648
+
Sbjct: 355 E 355
Score = 92 (37.4 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 52/280 (18%), Positives = 113/280 (40%)
Query: 239 ALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHD 298
AL + AL G Q E I +L K++VV + T SGK+ + +P+ E + +
Sbjct: 10 ALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWE 69
Query: 299 LSS-SALYMFPTKXXXXXXXXXXXXMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLIT 357
+ AL + PT+ + + F +Y + ++ L+ +++
Sbjct: 70 ENKPQALVLTPTRELAVQVKEDITNIGR-FKRIKAAAIYGKSPFARQKLELKQKTHIVVG 128
Query: 358 NPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCH 417
P +L + + + L L+ + + + F+ +IDE +
Sbjct: 129 TPGR----VLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTM-LF 183
Query: 418 TALILRRLCRLCSHVYGSDPSFVFSTAT--SANPREHCM-ELANLSTLELIQNDGSPCAQ 474
+A + + RL S Y + P+ + A + + EH + E+ L L+++
Sbjct: 184 SATLPEDVERL-SRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKD------- 235
Query: 475 KLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEV 514
+ + NP SC+ + ++Q ++D ++ + P ++
Sbjct: 236 -VTTIENPDSCI--IFCRTQENVDHVYRQLDRVNYPCDKI 272
>TIGR_CMR|BA_5703 [details] [associations]
symbol:BA_5703 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 100 (40.3 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 36/121 (29%), Positives = 55/121 (45%)
Query: 528 CIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGV 587
CI FCR+++ + V Y R++ P D I G V EDR + DF GK +
Sbjct: 245 CIIFCRTQENVDHV--Y-RQLDRVNYP--CDKI---HGGMVQEDRFGVMDDFRKGKFRYL 296
Query: 588 AATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFM 647
AT+ GID+ +I ++ P S + GR+GR A+ F P + F+
Sbjct: 297 VATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAI--TFITPYEDRFL 354
Query: 648 K 648
+
Sbjct: 355 E 355
Score = 92 (37.4 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 52/280 (18%), Positives = 113/280 (40%)
Query: 239 ALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHD 298
AL + AL G Q E I +L K++VV + T SGK+ + +P+ E + +
Sbjct: 10 ALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWE 69
Query: 299 LSS-SALYMFPTKXXXXXXXXXXXXMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLIT 357
+ AL + PT+ + + F +Y + ++ L+ +++
Sbjct: 70 ENKPQALVLTPTRELAVQVKEDITNIGR-FKRIKAAAIYGKSPFARQKLELKQKTHIVVG 128
Query: 358 NPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCH 417
P +L + + + L L+ + + + F+ +IDE +
Sbjct: 129 TPGR----VLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTM-LF 183
Query: 418 TALILRRLCRLCSHVYGSDPSFVFSTAT--SANPREHCM-ELANLSTLELIQNDGSPCAQ 474
+A + + RL S Y + P+ + A + + EH + E+ L L+++
Sbjct: 184 SATLPEDVERL-SRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKD------- 235
Query: 475 KLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEV 514
+ + NP SC+ + ++Q ++D ++ + P ++
Sbjct: 236 -VTTIENPDSCI--IFCRTQENVDHVYRQLDRVNYPCDKI 272
>UNIPROTKB|F1NT69 [details] [associations]
symbol:F1NT69 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=IEA] [GO:0031965 "nuclear membrane" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0031965 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016591 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0008026 EMBL:AADN02029969 EMBL:AADN02029968 IPI:IPI00819481
ProteinModelPortal:F1NT69 Ensembl:ENSGALT00000038980
ArrayExpress:F1NT69 Uniprot:F1NT69
Length = 451
Score = 115 (45.5 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 52/210 (24%), Positives = 89/210 (42%)
Query: 429 CSHVYGSD--PSFV-FSTATSANPREHCMELANLSTLELIQNDGSPCAQ-KLFVLWNPTS 484
C +G D P ++ T + P C+ L +T + +Q+D + K + T
Sbjct: 166 CVSQWGHDFRPDYLRLGTLRTRIPNTPCVALTATATKQ-VQDDIVTALKLKQPLATFKTP 224
Query: 485 CLRSVLNKS-QTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRC-IAFCRSRKLCE-LV 541
C RS L Q T AN + + V G C I +CR R +C+ L
Sbjct: 225 CFRSNLFYDVQFKELLTDPYANLKDFCLKALEVKNTTGVYSG--CGIVYCRMRDVCDQLA 282
Query: 542 LSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGH 601
+ + ++ A Y AG A DR ++ ++ K+ + AT + +G+D +
Sbjct: 283 IELSYRGVKAKA---------YHAGLKAADRTSVQNEWMEEKIPVIVATISFGMGVDKAN 333
Query: 602 IDVTLHLGFPGSIASLWQQAGRSGRRERPS 631
+ H S+A +Q++GR+GR +PS
Sbjct: 334 VRFVAHWNIAKSMAGYYQESGRAGRDGKPS 363
Score = 75 (31.5 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 20/48 (41%), Positives = 27/48 (56%)
Query: 258 SHQAESIMASLAG-KNVVVATMTSSGKSLCYNLPVLEALSHDLSSSAL 304
S Q + MA + G K+V V T +GKSLCY LP + A+ + S L
Sbjct: 37 SLQESATMAVVRGEKDVFVCMPTGAGKSLCYQLPAVLAVGITIVISPL 84
>RGD|1310823 [details] [associations]
symbol:Recql5 "RecQ protein-like 5" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=IEA;ISO] [GO:0031965 "nuclear membrane"
evidence=IEA;ISO] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 RGD:1310823
GO:GO:0005524 GO:GO:0005730 GO:GO:0031965 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310 EMBL:CH473948
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016591
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
CTD:9400 KO:K10902 OrthoDB:EOG46WZ7X InterPro:IPR010716
Pfam:PF06959 ProDom:PD120154 OMA:DPKIEEF IPI:IPI00364336
RefSeq:NP_001099323.1 UniGene:Rn.198916 Ensembl:ENSRNOT00000007246
GeneID:287834 KEGG:rno:287834 NextBio:627111 Uniprot:D4ACP5
Length = 973
Score = 120 (47.3 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 28/97 (28%), Positives = 50/97 (51%)
Query: 538 CELVLSYTREILEETAPHLVD---SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALE 594
C +V TRE E+ A L + Y AG A +R +++ ++ K+ + AT +
Sbjct: 262 CGIVYCRTREACEQLAIELSSRGVNAKAYHAGLKASERTQVQNEWMEEKVPVIVATISFG 321
Query: 595 LGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPS 631
+G+D ++ H S+A +Q++GR+GR +PS
Sbjct: 322 MGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPS 358
Score = 78 (32.5 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 23/53 (43%), Positives = 29/53 (54%)
Query: 245 KSALKST-GISKLYSHQAES-IMASLAG-KNVVVATMTSSGKSLCYNLPVLEA 294
+S LK G + ES IMA + G K+V V T +GKSLCY LP + A
Sbjct: 17 RSTLKKVFGFDSFKTPLQESAIMAVVKGDKDVFVCMPTGAGKSLCYQLPAVLA 69
>TAIR|locus:2180255 [details] [associations]
symbol:RECQSIM "RECQ helicase SIM" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006281 "DNA repair" evidence=IDA] [GO:0043138 "3'-5' DNA
helicase activity" evidence=IDA] [GO:0006270 "DNA replication
initiation" evidence=RCA] [GO:0006275 "regulation of DNA
replication" evidence=RCA] [GO:0051726 "regulation of cell cycle"
evidence=RCA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR009060 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 EMBL:AC007478
InterPro:IPR015940 PROSITE:PS50030 GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 eggNOG:COG0514
TIGRFAMs:TIGR00614 GO:GO:0008026 GO:GO:0043138 EMBL:AC069556
HSSP:P15043 EMBL:AJ404475 EMBL:AY059754 EMBL:AY133823
IPI:IPI00537732 RefSeq:NP_568499.1 UniGene:At.10179
ProteinModelPortal:Q9FT69 SMR:Q9FT69 IntAct:Q9FT69
EnsemblPlants:AT5G27680.1 GeneID:832830 KEGG:ath:AT5G27680
TAIR:At5g27680 HOGENOM:HOG000084012 InParanoid:Q9FT69 KO:K10900
OMA:CRAKILV PhylomeDB:Q9FT69 ProtClustDB:CLSN2689878
Genevestigator:Q9FT69 Uniprot:Q9FT69
Length = 858
Score = 105 (42.0 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 23/64 (35%), Positives = 37/64 (57%)
Query: 563 YRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAG 622
Y A + R++ +DF KL V AT A +GID ++ +H G+ S+ + +Q+AG
Sbjct: 527 YNASLPKKHLRQVHQDFHDNKLQVVVATIAFGMGIDKKNVRKIIHYGWLQSLEAYYQEAG 586
Query: 623 RSGR 626
R+GR
Sbjct: 587 RAGR 590
Score = 91 (37.1 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 252 GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVL 292
GIS L S Q E++ +A K+ +V T SGKSLC+ +P L
Sbjct: 165 GISSLRSFQREALSTWVAHKDCLVLAATGSGKSLCFQIPAL 205
>TAIR|locus:2098886 [details] [associations]
symbol:AT3G61240 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005829
"cytosol" evidence=RCA] [GO:0009165 "nucleotide biosynthetic
process" evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006417 GO:GO:0006397 GO:GO:0003723
EMBL:AL137898 GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
EMBL:AJ010464 EMBL:AY120712 EMBL:BT000038 IPI:IPI00548726
PIR:T47916 PIR:T51743 RefSeq:NP_191683.1 RefSeq:NP_974472.1
UniGene:At.20236 ProteinModelPortal:Q9M2E0 SMR:Q9M2E0 STRING:Q9M2E0
PaxDb:Q9M2E0 PRIDE:Q9M2E0 EnsemblPlants:AT3G61240.1
EnsemblPlants:AT3G61240.2 GeneID:825296 KEGG:ath:AT3G61240
GeneFarm:928 TAIR:At3g61240 InParanoid:Q9M2E0 OMA:PLAMDQR
PhylomeDB:Q9M2E0 ProtClustDB:CLSN2683443 Genevestigator:Q9M2E0
GermOnline:AT3G61240 Uniprot:Q9M2E0
Length = 498
Score = 102 (41.0 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 31/101 (30%), Positives = 46/101 (45%)
Query: 547 EILEETAPHLVDSICVY-RAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVT 605
E+L + L S C Y A V + R R+ +F G + T+ GID+ ++V
Sbjct: 375 ELLAKKITELGYS-CFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVV 433
Query: 606 LHLGFPGSIASLWQQAGRSGRRERPSLAV-YVAFEGPLDQY 645
++ FP + S + GRSGR LAV V +E Y
Sbjct: 434 INFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMY 474
Score = 88 (36.0 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 34/138 (24%), Positives = 59/138 (42%)
Query: 225 DISARKAVLVEIPDALLD-NTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGK 283
D++A K E D L + + G K Q ESI +L G +++ +GK
Sbjct: 117 DVTATKGN--EFEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
Query: 284 SLCYNLPVLEALSHDLSS-SALYMFPTKXXXXXXXXXXXXMTKAFDASIDIGVYDGDTTQ 342
+ + +PVLE + + + A+ + PT+ ++K + I + V G T+
Sbjct: 175 TGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKYLN--IQVMVTTGGTSL 232
Query: 343 KDR-MWLRDNARLLITNP 359
+D M L LL+ P
Sbjct: 233 RDDIMRLHQPVHLLVGTP 250
>FB|FBgn0040290 [details] [associations]
symbol:RecQ4 "RecQ4" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003678 "DNA
helicase activity" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=ISS;IDA] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS;IMP]
[GO:0006302 "double-strand break repair" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0045740 "positive
regulation of DNA replication" evidence=IMP] [GO:0010971 "positive
regulation of G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0006284 "base-excision repair" evidence=IMP] [GO:0051301 "cell
division" evidence=IMP] [GO:0002164 "larval development"
evidence=IMP] [GO:0007307 "eggshell chorion gene amplification"
evidence=IMP] [GO:0036292 "DNA rewinding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IDA]
[GO:0032508 "DNA duplex unwinding" evidence=IDA] [GO:0007095
"mitotic G2 DNA damage checkpoint" evidence=IGI;IMP]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0007095 EMBL:AE014296 GO:GO:0051301 GO:GO:0010971
GO:GO:0006284 GO:GO:0008284 GO:GO:0006260 GO:GO:0008270
GO:GO:0006310 GO:GO:0003697 GO:GO:0006302 GO:GO:0045740
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0007307
GO:GO:0002164 HSSP:P15043 KO:K10730 InterPro:IPR021110 Pfam:PF11719
GO:GO:0036292 FlyBase:FBgn0040290 RefSeq:NP_652607.1
UniGene:Dm.1556 ProteinModelPortal:Q9VSE6 SMR:Q9VSE6 IntAct:Q9VSE6
PRIDE:Q9VSE6 EnsemblMetazoa:FBtr0076729 GeneID:53438
KEGG:dme:Dmel_CG7487 UCSC:CG7487-RA CTD:53438 InParanoid:Q9VSE6
OMA:GMPASRR PhylomeDB:Q9VSE6 GenomeRNAi:53438 NextBio:841159
ArrayExpress:Q9VSE6 Bgee:Q9VSE6 Uniprot:Q9VSE6
Length = 1579
Score = 107 (42.7 bits), Expect = 6.3e-06, Sum P(3) = 6.3e-06
Identities = 32/113 (28%), Positives = 48/113 (42%)
Query: 529 IAFCRSRKLCELVLSYTREILEETAPHLVDSICV----------YRAGYVAEDRRRIERD 578
I +C R CE + + R +++ D Y AG A RR +++
Sbjct: 1099 IIYCTRRDECERIAGFIRTCVQDRREPTQDQTKKRKRVNWQAEPYHAGMPASRRRTVQKA 1158
Query: 579 FFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPS 631
F +L V AT A +GI+ I +H P + S Q+ GR+GR PS
Sbjct: 1159 FMSNELRIVVATIAFGMGINKPDIRAVIHYNMPRNFESYVQEIGRAGRDGLPS 1211
Score = 87 (35.7 bits), Expect = 6.3e-06, Sum P(3) = 6.3e-06
Identities = 22/59 (37%), Positives = 31/59 (52%)
Query: 236 IPDALLDNTK----SALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLP 290
+PD + +T AL G + Q +IM +L+G + +V T SGKSLCY LP
Sbjct: 847 LPDGSVQDTTPEVLEALHMFGHTNFRKGQDRAIMRTLSGLSSLVTLSTGSGKSLCYQLP 905
Score = 55 (24.4 bits), Expect = 6.3e-06, Sum P(3) = 6.3e-06
Identities = 21/102 (20%), Positives = 43/102 (42%)
Query: 59 RVGIEDIENLAVLCPKVVQ-FANDDMESKNHDDSIVIINVSTEERDKVEDNLGSGQKAIS 117
R+ ++D+E + ++ FA + +I + R K+E+ + +G+ +
Sbjct: 564 RINVQDLEEADATAQRYIRTFAAGPNPGLSEGSNIRVDEKRAAARKKLEERIAAGKLNEN 623
Query: 118 LSKIFNAMKKRERSFKTNLWEAVNLLMCKLQKRVMSLSVEDL 159
I KK R K+ + + +KRV +LS D+
Sbjct: 624 FVTINIQKKKFVRGKKSVNFSKYKKQQWRHKKRVAALSGPDM 665
>RGD|1307732 [details] [associations]
symbol:Recql4 "RecQ protein-like 4" species:10116 "Rattus
norvegicus" [GO:0000405 "bubble DNA binding" evidence=ISO]
[GO:0000733 "DNA strand renaturation" evidence=ISO] [GO:0001501
"skeletal system development" evidence=ISO] [GO:0003674
"molecular_function" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA;ISO]
[GO:0005575 "cellular_component" evidence=ND] [GO:0006260 "DNA
replication" evidence=ISO] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA;ISO] [GO:0032508
"DNA duplex unwinding" evidence=ISO] [GO:0043140 "ATP-dependent
3'-5' DNA helicase activity" evidence=ISO] [GO:0043473
"pigmentation" evidence=IEA;ISO] [GO:0045875 "negative regulation
of sister chromatid cohesion" evidence=IEA;ISO] [GO:0048705
"skeletal system morphogenesis" evidence=IEA;ISO]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
RGD:1307732 GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
GO:GO:0006310 Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074520
TIGRFAMs:TIGR00614 GO:GO:0008026 InterPro:IPR021110 Pfam:PF11719
IPI:IPI00366433 Ensembl:ENSRNOT00000045135 UCSC:RGD:1307732
ArrayExpress:D4A5W5 Uniprot:D4A5W5
Length = 1216
Score = 133 (51.9 bits), Expect = 6.9e-06, Sum P(3) = 6.9e-06
Identities = 36/109 (33%), Positives = 56/109 (51%)
Query: 529 IAFCRSRKLCELVLSYTREILE---ETAPHL--VDSIC-VYRAGYVAEDRRRIERDFFGG 582
I +C RK E V + R L ++ P +++ Y AG +++R+R+++ F G
Sbjct: 726 IIYCARRKDTERVAALLRTCLSTVRDSKPRGRGPETLAEAYHAGMCSQERKRVQQAFMQG 785
Query: 583 KLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPS 631
L V AT A +G+D + LHLG P S S Q GR+GR +P+
Sbjct: 786 HLRMVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAIGRAGRDGKPA 834
Score = 74 (31.1 bits), Expect = 6.9e-06, Sum P(3) = 6.9e-06
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 260 QAESIMASLAGKNVVVATMTSSGKSLCYNLPVL 292
Q ++M L+G + ++ T +GKSLCY LP L
Sbjct: 502 QERAVMRILSGISTLLVLPTGAGKSLCYQLPAL 534
Score = 37 (18.1 bits), Expect = 6.9e-06, Sum P(3) = 6.9e-06
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 896 FRSGLHAASHALLHV 910
+R LH HAL+H+
Sbjct: 1192 WRKYLHLDFHALMHL 1206
>UNIPROTKB|P96901 [details] [associations]
symbol:lhr "PROBABLE ATP-DEPENDENT HELICASE LHR (LARGE
HELICASE-RELATED PROTEIN)" species:83332 "Mycobacterium
tuberculosis H37Rv" [GO:0005618 "cell wall" evidence=IDA]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
InterPro:IPR013701 Pfam:PF00270 Pfam:PF00271 Pfam:PF08494
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0005618 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
GO:GO:0003676 EMBL:BX842582 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000238716 KO:K03724
OMA:PRLVWDR EMBL:CP003248 PIR:A70982 RefSeq:NP_217813.1
RefSeq:NP_337924.1 RefSeq:YP_006516773.1
EnsemblBacteria:EBMYCT00000002553 EnsemblBacteria:EBMYCT00000072323
GeneID:13318119 GeneID:887503 GeneID:926649 KEGG:mtc:MT3395
KEGG:mtu:Rv3296 KEGG:mtv:RVBD_3296 PATRIC:18129218
TubercuList:Rv3296 ProtClustDB:CLSK792412 Uniprot:P96901
Length = 1513
Score = 146 (56.5 bits), Expect = 7.2e-06, P = 7.2e-06
Identities = 108/451 (23%), Positives = 178/451 (39%)
Query: 260 QAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL--SHDLS-----SSALYMFPTKXX 312
QA + A G N +V T SGK+L L L++L S +S + LY+ P K
Sbjct: 31 QASAWAAIADGDNTLVIAPTGSGKTLAAFLWALDSLAGSEPMSERPAATRVLYVSPLKAL 90
Query: 313 XXXXXXXXXXMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQ 372
+ G + R+ +R P L ++ Q
Sbjct: 91 AVDVERNLRTPLAGLTR---LAERQGLPAPQIRVGVRSG-----DTPPALRRQLV---SQ 139
Query: 373 FSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAF-GCHTALILRRLCRLCSH 431
+L F ++T+ ++ V+IDE HA G H AL L RL L S
Sbjct: 140 PPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAATKRGAHLALSLERLDDLSSR 199
Query: 432 VYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFV-LWNPTSCLRSVL 490
+ +AT P E L+ S ++ P A+ + + + P + ++
Sbjct: 200 RRAQR---IGLSATVRPPEELARFLSGQSPTTIV---APPAAKTVELSVQVPVPDMANLT 253
Query: 491 -NKSQTDMD----DTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYT 545
N D++ D + N T + S AE + L I R EL
Sbjct: 254 DNTIWPDVEARLVDLIESHNSTI--VFANSRRLAERLTARLNEIHAARCG--IELAPDTN 309
Query: 546 REILEETAPHLVDSICVYRA---------GYVAEDRRRI-ERDFFGGKLCGVAATNALEL 595
+++ H++ S + A G +++++R + E D G+L V AT++LEL
Sbjct: 310 QQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKAVVATSSLEL 369
Query: 596 GIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAF-EGPLDQYFMKYP-EKL 653
GID+G +D+ + + P S+AS Q+ GR+G + ++ V F + D +++
Sbjct: 370 GIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVG-EISRGVLFPKHRTDLLGCAVSVQRM 428
Query: 654 FKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
IE + A +L QH V AA PL
Sbjct: 429 LAGEIETMRVPANPLDILAQHTVAAAALEPL 459
>UNIPROTKB|A4R715 [details] [associations]
symbol:DHH1 "ATP-dependent RNA helicase DHH1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 GO:GO:0003723 GO:GO:0000932
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001234 GO:GO:0008026 eggNOG:COG0513 KO:K12614
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_003716556.1
GeneID:2676879 KEGG:mgr:MGG_03388 OrthoDB:EOG4QJVWF Uniprot:A4R715
Length = 535
Score = 95 (38.5 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 32/119 (26%), Positives = 54/119 (45%)
Query: 529 IAFCRSRKLCELVLSYTREILEETAPHLVDSICVY-RAGYVAEDRRRIERDFFGGKLCGV 587
I FC S EL+ ++I E + C Y A + R R+ DF G +
Sbjct: 288 IIFCNSTNRVELL---AKKITE------LGYSCFYSHAKMQQQARNRVFHDFRNGVCRNL 338
Query: 588 AATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAV-YVAFEGPLDQY 645
++ L GID+ ++V ++ FP + + + GRSGR LA+ +++E + Y
Sbjct: 339 VCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLISWEDRFNLY 397
Score = 95 (38.5 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 32/138 (23%), Positives = 60/138 (43%)
Query: 224 EDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGK 283
ED++ K + E L + + G K Q ESI +L G++++ +GK
Sbjct: 39 EDVTNTKGLEFE-NFGLKRDLLMGIFEAGFEKPSPIQEESIPVALTGRDILARAKNGTGK 97
Query: 284 SLCYNLPVLEALSHDLSS-SALYMFPTKXXXXXXXXXXXXMTKAFDASIDIGVYDGDTTQ 342
+ + +P LE ++ +S L + PT+ + K I++ V G TT
Sbjct: 98 TAAFVVPALETINPKVSKIQCLILVPTRELAMQTSQVCKTLGKHL--GINVMVTTGGTTL 155
Query: 343 KDRMW-LRDNARLLITNP 359
+D + L+D +++ P
Sbjct: 156 RDDILRLQDPVHIVVGTP 173
>TIGR_CMR|BA_2818 [details] [associations]
symbol:BA_2818 "ATP-dependent DNA helicase RecQ"
species:198094 "Bacillus anthracis str. Ames" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006268
"DNA unwinding involved in replication" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] [GO:0006310 "DNA recombination"
evidence=ISS] [GO:0009378 "four-way junction helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00490 SMART:SM00956 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0005622 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80 TIGRFAMs:TIGR00614
GO:GO:0009432 HSSP:P15043 HOGENOM:HOG000044388 KO:K03654
TIGRFAMs:TIGR01389 OMA:YCLSRAK RefSeq:NP_845165.1
RefSeq:YP_019461.1 RefSeq:YP_028886.1 ProteinModelPortal:Q81PI6
DNASU:1085972 EnsemblBacteria:EBBACT00000011651
EnsemblBacteria:EBBACT00000017455 EnsemblBacteria:EBBACT00000023670
GeneID:1085972 GeneID:2814571 GeneID:2847794 KEGG:ban:BA_2818
KEGG:bar:GBAA_2818 KEGG:bat:BAS2627 ProtClustDB:CLSK916814
BioCyc:BANT260799:GJAJ-2691-MONOMER
BioCyc:BANT261594:GJ7F-2786-MONOMER Uniprot:Q81PI6
Length = 705
Score = 116 (45.9 bits), Expect = 7.6e-06, Sum P(2) = 7.6e-06
Identities = 27/97 (27%), Positives = 53/97 (54%)
Query: 533 RSRKLCELVLSYTREILEETAPHLVD---SICVYRAGYVAEDRRRIERDFFGGKLCGVAA 589
+++K ++ + TR+++++ L+ S+ Y AG DR + F ++ + A
Sbjct: 226 QNQKESGIIYAATRKVVDQLYEDLMKAGVSVSKYHAGMSDHDRNEQQELFLRDEVSVMVA 285
Query: 590 TNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGR 626
T+A +GID +I +H P ++ S +Q+AGR+GR
Sbjct: 286 TSAFGMGIDKSNIRYVIHYQLPKNMESYYQEAGRAGR 322
Score = 76 (31.8 bits), Expect = 7.6e-06, Sum P(2) = 7.6e-06
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 252 GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVL 292
G S Q E+I L GK+ V T GKS+CY +P L
Sbjct: 14 GYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPAL 54
>UNIPROTKB|Q33DM4 [details] [associations]
symbol:recql4 "RecQ4 protein" species:8355 "Xenopus laevis"
[GO:0000785 "chromatin" evidence=IDA] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006260 "DNA replication"
evidence=IMP] [GO:0035563 "positive regulation of chromatin
binding" evidence=IMP] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0006260
GO:GO:0008270 GO:GO:0000785 GO:GO:0003682 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0035563 CTD:9401
HOVERGEN:HBG065925 KO:K10730 InterPro:IPR021110 Pfam:PF11719
EMBL:AB213025 RefSeq:NP_001089182.1 UniGene:Xl.51337
ProteinModelPortal:Q33DM4 GeneID:734225 KEGG:xla:734225
Xenbase:XB-GENE-997817 Uniprot:Q33DM4
Length = 1503
Score = 112 (44.5 bits), Expect = 8.2e-06, Sum P(3) = 8.2e-06
Identities = 24/64 (37%), Positives = 36/64 (56%)
Query: 563 YRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAG 622
Y AG A +RRR++ +F G+L V AT A +G+D + +H P + S Q+ G
Sbjct: 1023 YHAGMSAAERRRVQNNFMCGQLRLVVATVAFGMGLDKSDVRGIIHYNMPKNFESYVQEIG 1082
Query: 623 RSGR 626
R+GR
Sbjct: 1083 RAGR 1086
Score = 86 (35.3 bits), Expect = 8.2e-06, Sum P(3) = 8.2e-06
Identities = 21/56 (37%), Positives = 28/56 (50%)
Query: 235 EIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLP 290
E P + DN L G S Q +++M L+G + +V T GKSLCY LP
Sbjct: 713 ETPSEVYDN----LSELGYRSFRSGQEQAVMRILSGLSSLVILSTGMGKSLCYQLP 764
Score = 49 (22.3 bits), Expect = 8.2e-06, Sum P(3) = 8.2e-06
Identities = 17/70 (24%), Positives = 35/70 (50%)
Query: 98 STEERDKVEDNLGSGQKAISLSKIFNAMKKRERSFKTNLWEAVNLLMCKLQKRVMSLSVE 157
S +E D ++N+ + Q ++ L+K ++RE S + + E + K +K S
Sbjct: 431 SLQEVDMSQENIAAEQVSVILAKGKRKKRQRETSAEPDTVEVSPKVSKKRRKTNRSPDNS 490
Query: 158 DLLTYVKERR 167
+ + V++RR
Sbjct: 491 ENSSSVRKRR 500
>UNIPROTKB|Q87XN5 [details] [associations]
symbol:PSPTO_4141 "Helicase domain protein" species:223283
"Pseudomonas syringae pv. tomato str. DC3000" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR013701 InterPro:IPR017170 Pfam:PF00270 Pfam:PF00271
Pfam:PF08494 PIRSF:PIRSF037307 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 EMBL:AE016853 GenomeReviews:AE016853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG1201 KO:K03724 HOGENOM:HOG000036041 InterPro:IPR026362
TIGRFAMs:TIGR04121 RefSeq:NP_793902.1 ProteinModelPortal:Q87XN5
GeneID:1185821 KEGG:pst:PSPTO_4141 PATRIC:19999779 OMA:FTNTRNQ
ProtClustDB:CLSK908616 BioCyc:PSYR223283:GJIX-4205-MONOMER
Uniprot:Q87XN5
Length = 836
Score = 128 (50.1 bits), Expect = 8.4e-06, Sum P(2) = 8.4e-06
Identities = 49/161 (30%), Positives = 69/161 (42%)
Query: 522 VQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFG 581
V C+ F +R E+ Y + L E P I ++ E R +ER
Sbjct: 264 VHSSASCLVFTNTRAQSEIW--Y--QALLEARPDWAGLIALHHGSLAREVRDWVERALKE 319
Query: 582 GKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRE-RPSLAVYVAFEG 640
G L V T++L+LG+D ++ L +G P +A L Q+AGRSG RPS V
Sbjct: 320 GVLKAVVCTSSLDLGVDFLPVERVLQIGSPKGVARLMQRAGRSGHAPGRPSRVTLVPTHS 379
Query: 641 -PLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAAL 680
L + + + + IE Q VL QHLV AL
Sbjct: 380 LELVEAAAAH-DAVAARMIEPRESPHQPLDVLVQHLVSMAL 419
Score = 65 (27.9 bits), Expect = 8.4e-06, Sum P(2) = 8.4e-06
Identities = 38/152 (25%), Positives = 61/152 (40%)
Query: 239 ALLDNTKSAL--KSTGISKLYS--HQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEA 294
A + N +S L STG K Y+ A + A+ A N T+T+ K P
Sbjct: 28 AAVKNGESGLLHASTGSGKTYAVWFAALNRFAN-ANANTNTNTLTADDKPRKRKPPAAPL 86
Query: 295 LSHDLSSSALYMFPTKXXXXXXXXXXXXMTKAFDASIDIGVYDGDTTQKDRMWLRDNARL 354
S L++ P + D + +G+ GDT+ +R R + RL
Sbjct: 87 -------SVLWITPMRALAADTARALEAPLAELDIAWSVGLRTGDTSGSERA--RQSRRL 137
Query: 355 ---LITNPDMLHMSILPYHGQFSRILSNLRLI 383
LIT P+ L + + Q + LS L+++
Sbjct: 138 PSALITTPESLTLLLTRADAQVA--LSTLKMV 167
>UNIPROTKB|E1BKM5 [details] [associations]
symbol:RECQL5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0031965 "nuclear membrane" evidence=IEA] [GO:0016591
"DNA-directed RNA polymerase II, holoenzyme" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0031965
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016591
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
CTD:9400 KO:K10902 InterPro:IPR010716 Pfam:PF06959 ProDom:PD120154
EMBL:DAAA02049519 IPI:IPI00698201 RefSeq:NP_001179255.1
UniGene:Bt.62459 Ensembl:ENSBTAT00000015555 GeneID:512590
KEGG:bta:512590 OMA:DPKIEEF NextBio:20870462 Uniprot:E1BKM5
Length = 987
Score = 114 (45.2 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
Identities = 27/97 (27%), Positives = 49/97 (50%)
Query: 538 CELVLSYTREILEETAPHLVD---SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALE 594
C ++ TRE E+ A L + Y AG A +R ++ ++ K+ + AT +
Sbjct: 260 CGIIYCRTREACEQLATELSYRGVNAKAYHAGLKAPERTLVQNEWMEEKVPVIVATISFG 319
Query: 595 LGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPS 631
+G+D ++ H S+A +Q++GR+GR +PS
Sbjct: 320 MGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPS 356
Score = 81 (33.6 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
Identities = 19/36 (52%), Positives = 24/36 (66%)
Query: 260 QAESIMASLAG-KNVVVATMTSSGKSLCYNLPVLEA 294
Q ++IMA + G K+V V T +GKSLCY LP L A
Sbjct: 33 QEKAIMAVVKGDKDVFVCMPTGAGKSLCYQLPALLA 68
>TAIR|locus:2197555 [details] [associations]
symbol:RECQL2 "RECQ helicase L2" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016592 "mediator complex" evidence=IDA] [GO:0006281 "DNA
repair" evidence=IC] [GO:0006310 "DNA recombination" evidence=IC]
[GO:0009378 "four-way junction helicase activity" evidence=IDA]
[GO:0043138 "3'-5' DNA helicase activity" evidence=IDA] [GO:0000278
"mitotic cell cycle" evidence=RCA] [GO:0006396 "RNA processing"
evidence=RCA] [GO:0010413 "glucuronoxylan metabolic process"
evidence=RCA] [GO:0045492 "xylan biosynthetic process"
evidence=RCA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00490 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0006310 EMBL:AC007654 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 eggNOG:COG0514 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0009378 GO:GO:0016592 GO:GO:0043138
EMBL:AJ404471 IPI:IPI00518751 IPI:IPI00846160 RefSeq:NP_001077639.1
RefSeq:NP_174421.2 UniGene:At.40359 HSSP:P15043
ProteinModelPortal:Q9FT73 SMR:Q9FT73 IntAct:Q9FT73 STRING:Q9FT73
PaxDb:Q9FT73 PRIDE:Q9FT73 EnsemblPlants:AT1G31360.1 GeneID:840026
KEGG:ath:AT1G31360 TAIR:At1g31360 InParanoid:Q9FT73 KO:K10899
OMA:ESSQTCH PhylomeDB:Q9FT73 ProtClustDB:CLSN2680338
Genevestigator:Q9FT73 Uniprot:Q9FT73
Length = 705
Score = 98 (39.6 bits), Expect = 8.8e-06, Sum P(2) = 8.8e-06
Identities = 52/224 (23%), Positives = 92/224 (41%)
Query: 416 CHTA----LILRRLCRLCSHVYGSD--PSFV-FSTATSANPREHCMELANLSTLELIQND 468
CH A LI CS +G D P + S + P+ + L +T + +QND
Sbjct: 205 CHNAGRLSLISIDEAHCCSQ-WGHDFRPDYKNLSILKTQFPKVPMVALTATAT-QKVQND 262
Query: 469 GSPCAQKLFVLWNPTSCLRSVLNKSQTDMD-DTRNAANKTSSPISEVSYLFAEMVQHGLR 527
L + + C++ V + ++ ++ R + + E++ E +
Sbjct: 263 -------LIEMLHIPKCVKFVSSVNRPNLFYSVREKSAVGKLVVDEIAEFIRESYSNNES 315
Query: 528 CIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGV 587
I +C SRK CE + RE +A + Y A A R ++ + KL +
Sbjct: 316 GIVYCFSRKECEQIAGDLRE-RGISADY-------YHADMDANMREKVHMRWSKNKLQVI 367
Query: 588 AATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPS 631
T A +GI+ + +H S+ + +Q++GR+GR PS
Sbjct: 368 VGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPS 411
Score = 94 (38.1 bits), Expect = 8.8e-06, Sum P(2) = 8.8e-06
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 252 GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVL 292
GISK ++Q E I A + G++V+V GKSLCY LP +
Sbjct: 86 GISKYRANQKEIINAIMTGRDVLVIMAAGGGKSLCYQLPAM 126
>ASPGD|ASPL0000036135 [details] [associations]
symbol:AN10417 species:162425 "Emericella nidulans"
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] [GO:0003724 "RNA
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0030996 "cell
cycle arrest in response to nitrogen starvation" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0033962
"cytoplasmic mRNA processing body assembly" evidence=IEA]
[GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0031142 "induction of
conjugation upon nitrogen starvation" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:BN001306 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 OMA:HIDPARF
EnsemblFungi:CADANIAT00009573 Uniprot:C8VHA5
Length = 498
Score = 95 (38.5 bits), Expect = 9.8e-06, Sum P(2) = 9.8e-06
Identities = 30/107 (28%), Positives = 49/107 (45%)
Query: 529 IAFCRSRKLCELVLSYTREILEETAPHLVDSICVY-RAGYVAEDRRRIERDFFGGKLCGV 587
I FC S EL+ ++I E + C Y A + + R R+ DF G +
Sbjct: 280 IIFCNSTNRVELL---AKKITE------LGYSCFYSHARMLQQHRNRVFHDFRNGVCRNL 330
Query: 588 AATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAV 634
++ L GID+ ++V ++ FP + + + GRSGR LA+
Sbjct: 331 VCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAI 377
Score = 93 (37.8 bits), Expect = 9.8e-06, Sum P(2) = 9.8e-06
Identities = 32/139 (23%), Positives = 58/139 (41%)
Query: 224 EDISARKAVLVEIPDALLDNT-KSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSG 282
ED++A K + E D + + G K Q E+I +L G++++ +G
Sbjct: 31 EDVTATKGL--EFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTG 88
Query: 283 KSLCYNLPVLEALS-HDLSSSALYMFPTKXXXXXXXXXXXXMTKAFDASIDIGVYDGDT- 340
K+ + +P LE ++ + AL + PT+ + K I++ V G T
Sbjct: 89 KTAAFVIPTLERINPKSTKTQALILVPTRELALQTSHVCKTLGKHL--GINVMVTTGGTG 146
Query: 341 TQKDRMWLRDNARLLITNP 359
D + L D +L+ P
Sbjct: 147 LMDDIIRLNDAVHILVGTP 165
>UNIPROTKB|E2RPT4 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00680000100003
EMBL:AAEX03002786 Ensembl:ENSCAFT00000038045 Uniprot:E2RPT4
Length = 687
Score = 105 (42.0 bits), Expect = 9.9e-06, Sum P(2) = 9.9e-06
Identities = 32/129 (24%), Positives = 63/129 (48%)
Query: 527 RCIAFCRSRK-LCELVLSYTREILEETAPHLVDSI-CVYRAGYVAEDRRRIE-RDFFGGK 583
R I FC ++K + E+ ++ PH+ + C++ G +A+ +R I + F G
Sbjct: 393 RAIIFCETKKNVTEMAMN----------PHIKQNAQCLH--GDIAQSQREITLKGFREGS 440
Query: 584 LCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLD 643
+ ATN G+D+ +D+ + P + S ++GR+GR R + + F P +
Sbjct: 441 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICI--CFYQPRE 498
Query: 644 QYFMKYPEK 652
+ ++Y E+
Sbjct: 499 RGQLRYVEQ 507
Score = 86 (35.3 bits), Expect = 9.9e-06, Sum P(2) = 9.9e-06
Identities = 34/155 (21%), Positives = 62/155 (40%)
Query: 242 DNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDL-- 299
+ T LK G+S L+ Q ++ GK+++ T +GK+ + +P++E L +
Sbjct: 148 EETIKLLKGRGVSYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQET 207
Query: 300 -----SSSALYMFPTKXXXXXXXXXXXXMTKAFDASIDIGVYDGDTTQKDRMWLRDNARL 354
S L + PT+ +T+ + Y G + Q +R+ +
Sbjct: 208 IKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVAC---FYGGTSYQSQINHIRNGIDI 264
Query: 355 LITNPDMLHMSILPYHGQFSRI-LSNLRLIAFSLV 388
L+ P + H Q R+ LS LR + V
Sbjct: 265 LVGTPGRIKD-----HLQSGRLDLSKLRHVVLDEV 294
>TIGR_CMR|SO_1383 [details] [associations]
symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
Length = 433
Score = 97 (39.2 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 28/122 (22%), Positives = 55/122 (45%)
Query: 247 ALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL----SHDLSSS 302
A+ G K+ Q ++I A G++V+ + T +GK+ + LP+L+ + S L S+
Sbjct: 15 AISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMVENPSETLKSN 74
Query: 303 A--LYMFPTKXXXXXXXXXXXXMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPD 360
L + PT+ +K + S+ + +Y G + L+ A +++ P
Sbjct: 75 TRVLILTPTRELAAQVAENVEAYSKYLNFSV-LTIYGGVKVETQAQKLKRGADIIVATPG 133
Query: 361 ML 362
L
Sbjct: 134 RL 135
Score = 89 (36.4 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 33/139 (23%), Positives = 59/139 (42%)
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHL-VDSIC-- 561
N T+ +S+V Y + + L + LV + TR+ + L +D I
Sbjct: 213 NTTADTVSQVVYPVEQRRKRELLSELIGKKNWQQVLVFTATRDAADTLVKELNLDGIPSE 272
Query: 562 VYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQA 621
V RRR R+F GK+ + AT G+D+ ++ ++ P +
Sbjct: 273 VVHGEKAQGSRRRALREFVSGKVRVLVATEVAARGLDIPSLEYVVNFDLPFLAEDYVHRI 332
Query: 622 GRSGRRERPSLAV-YVAFE 639
GR+GR + +A+ +V+ E
Sbjct: 333 GRTGRAGKSGVAISFVSRE 351
>UNIPROTKB|O94762 [details] [associations]
symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003678 "DNA helicase activity"
evidence=NAS] [GO:0005654 "nucleoplasm" evidence=NAS] [GO:0005737
"cytoplasm" evidence=IDA;NAS] [GO:0006259 "DNA metabolic process"
evidence=NAS] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0032508 "DNA duplex unwinding" evidence=NAS;TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0031965 "nuclear membrane" evidence=IDA] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0005730
GO:GO:0006281 GO:GO:0031965 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0016591 eggNOG:COG0514
TIGRFAMs:TIGR00614 GO:GO:0008026 EMBL:AB006533 EMBL:AF135183
EMBL:AB042823 EMBL:AB042824 EMBL:AB042825 EMBL:BC016911
EMBL:AL136869 IPI:IPI00220819 IPI:IPI00220820 IPI:IPI01015246
RefSeq:NP_001003715.1 RefSeq:NP_001003716.1 RefSeq:NP_004250.4
UniGene:Hs.632229 ProteinModelPortal:O94762 SMR:O94762
DIP:DIP-32964N IntAct:O94762 MINT:MINT-1378331 STRING:O94762
PhosphoSite:O94762 PaxDb:O94762 PRIDE:O94762
Ensembl:ENST00000317905 Ensembl:ENST00000340830
Ensembl:ENST00000420326 Ensembl:ENST00000584999 GeneID:9400
KEGG:hsa:9400 UCSC:uc002joz.4 UCSC:uc002jpb.2 UCSC:uc010dgl.3
CTD:9400 GeneCards:GC17M073622 HGNC:HGNC:9950 HPA:HPA029970
HPA:HPA029971 MIM:603781 neXtProt:NX_O94762 PharmGKB:PA34317
HOGENOM:HOG000206773 HOVERGEN:HBG057065 InParanoid:O94762 KO:K10902
OrthoDB:EOG46WZ7X PhylomeDB:O94762 ChiTaRS:RECQL5 GenomeRNAi:9400
NextBio:35211 ArrayExpress:O94762 Bgee:O94762 CleanEx:HS_RECQL5
Genevestigator:O94762 GermOnline:ENSG00000108469 InterPro:IPR010716
Pfam:PF06959 ProDom:PD120154 Uniprot:O94762
Length = 991
Score = 118 (46.6 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 29/97 (29%), Positives = 49/97 (50%)
Query: 538 CELVLSYTREILEETAPHLVD---SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALE 594
C +V TRE E+ A L + Y AG A +R ++ D+ K+ + AT +
Sbjct: 261 CGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEEKVPVIVATISFG 320
Query: 595 LGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPS 631
+G+D ++ H S+A +Q++GR+GR +PS
Sbjct: 321 MGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPS 357
Score = 76 (31.8 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 23/53 (43%), Positives = 28/53 (52%)
Query: 245 KSALKST-GISKLYSHQAESI-MASLAG-KNVVVATMTSSGKSLCYNLPVLEA 294
+S LK G + ES MA + G K+V V T +GKSLCY LP L A
Sbjct: 17 RSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALLA 69
>UNIPROTKB|F1SUG8 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00680000100003 OMA:GDTEEGC
EMBL:CU468175 Ensembl:ENSSSCT00000011216 Uniprot:F1SUG8
Length = 737
Score = 105 (42.0 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 32/129 (24%), Positives = 63/129 (48%)
Query: 527 RCIAFCRSRK-LCELVLSYTREILEETAPHLVDSI-CVYRAGYVAEDRRRIE-RDFFGGK 583
R I FC ++K + E+ ++ PH+ + C++ G +A+ +R I + F G
Sbjct: 391 RAIIFCETKKNVTEMAMN----------PHIKQNAQCLH--GDIAQSQREITLKGFREGS 438
Query: 584 LCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLD 643
+ ATN G+D+ +D+ + P + S ++GR+GR R + + F P +
Sbjct: 439 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICI--CFYQPRE 496
Query: 644 QYFMKYPEK 652
+ ++Y E+
Sbjct: 497 RGQLRYVEQ 505
Score = 86 (35.3 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 34/155 (21%), Positives = 62/155 (40%)
Query: 242 DNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDL-- 299
+ T LK G++ L+ Q ++ GK+++ T +GK+ + +P++E L +
Sbjct: 146 EETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQET 205
Query: 300 -----SSSALYMFPTKXXXXXXXXXXXXMTKAFDASIDIGVYDGDTTQKDRMWLRDNARL 354
S L + PT+ +TK + Y G + Q +R+ +
Sbjct: 206 IKKSRSPKVLVLAPTRELANQVAKDFKDITKKLSVAC---FYGGTSYQSQINHIRNGIDI 262
Query: 355 LITNPDMLHMSILPYHGQFSRI-LSNLRLIAFSLV 388
L+ P + H Q R+ LS LR + V
Sbjct: 263 LVGTPGRIKD-----HLQSGRLDLSKLRHVVLDEV 292
>UNIPROTKB|E2QTT0 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 OMA:GDTEEGC EMBL:AAEX03002786
Ensembl:ENSCAFT00000021867 NextBio:20898308 Uniprot:E2QTT0
Length = 738
Score = 105 (42.0 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 32/129 (24%), Positives = 63/129 (48%)
Query: 527 RCIAFCRSRK-LCELVLSYTREILEETAPHLVDSI-CVYRAGYVAEDRRRIE-RDFFGGK 583
R I FC ++K + E+ ++ PH+ + C++ G +A+ +R I + F G
Sbjct: 392 RAIIFCETKKNVTEMAMN----------PHIKQNAQCLH--GDIAQSQREITLKGFREGS 439
Query: 584 LCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLD 643
+ ATN G+D+ +D+ + P + S ++GR+GR R + + F P +
Sbjct: 440 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICI--CFYQPRE 497
Query: 644 QYFMKYPEK 652
+ ++Y E+
Sbjct: 498 RGQLRYVEQ 506
Score = 86 (35.3 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 34/155 (21%), Positives = 62/155 (40%)
Query: 242 DNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDL-- 299
+ T LK G+S L+ Q ++ GK+++ T +GK+ + +P++E L +
Sbjct: 147 EETIKLLKGRGVSYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQET 206
Query: 300 -----SSSALYMFPTKXXXXXXXXXXXXMTKAFDASIDIGVYDGDTTQKDRMWLRDNARL 354
S L + PT+ +T+ + Y G + Q +R+ +
Sbjct: 207 IKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVAC---FYGGTSYQSQINHIRNGIDI 263
Query: 355 LITNPDMLHMSILPYHGQFSRI-LSNLRLIAFSLV 388
L+ P + H Q R+ LS LR + V
Sbjct: 264 LVGTPGRIKD-----HLQSGRLDLSKLRHVVLDEV 293
>UNIPROTKB|Q4K580 [details] [associations]
symbol:lhr "Putative ATP-dependent helicase" species:220664
"Pseudomonas protegens Pf-5" [GO:0006139 "nucleobase-containing
compound metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR005471 InterPro:IPR011545 InterPro:IPR013701
Pfam:PF00270 Pfam:PF00271 Pfam:PF08494 Pfam:PF09339 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
GO:GO:0006139 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000076
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG1201 HOGENOM:HOG000238716 KO:K03724 RefSeq:YP_262603.2
GeneID:3479923 KEGG:pfl:PFL_5535 PATRIC:19880561
ProtClustDB:CLSK838736 BioCyc:PFLU220664:GIX8-5572-MONOMER
Uniprot:Q4K580
Length = 1428
Score = 131 (51.2 bits), Expect = 1.4e-05, Sum P(4) = 1.4e-05
Identities = 31/93 (33%), Positives = 48/93 (51%)
Query: 540 LVLSYTREILEETAPHLVD-----SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALE 594
L+ TR + E A HL + ++ + E R E+ G L + AT +LE
Sbjct: 281 LIFVNTRRLAERLARHLSERLGKQAVAAHHGSLAKEQRLEAEQRLKAGDLQVLIATASLE 340
Query: 595 LGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRR 627
LGID+G +D+ +G P SI++ Q+ GRSG +
Sbjct: 341 LGIDIGDVDLVCQIGSPRSISAFLQRVGRSGHQ 373
Score = 78 (32.5 bits), Expect = 1.4e-05, Sum P(4) = 1.4e-05
Identities = 22/69 (31%), Positives = 41/69 (59%)
Query: 328 DASIDIGVYDGDTTQKDRMWLRDNA-RLLITNPDMLHMSILPYHGQFSRILSNLRLIAFS 386
+ SI V GDT QKDR +R +A ++L+T P+ L++ + G+ R+L++ R S
Sbjct: 120 ELSISTAVRTGDTPQKDRNAMRKSAPQILVTTPESLYVLLGSDSGR--RMLASTR----S 173
Query: 387 LVTTEVYLI 395
++ E++ +
Sbjct: 174 VIIDEIHAL 182
Score = 70 (29.7 bits), Expect = 8.1e-05, Sum P(4) = 8.1e-05
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 400 RFVVIDEAHAYKGAF-GCHTALILRRLCRLCS 430
R V+IDE HA G+ G H AL L RL LC+
Sbjct: 172 RSVIIDEIHALAGSKRGSHLALSLERLQALCA 203
Score = 41 (19.5 bits), Expect = 1.4e-05, Sum P(4) = 1.4e-05
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 271 KNVVVATMTSSGKSLCYNLPVLEAL 295
++ ++A T SGK+L L V++ L
Sbjct: 44 RSTLIAAPTGSGKTLTAFLAVIDDL 68
Score = 37 (18.1 bits), Expect = 1.4e-05, Sum P(4) = 1.4e-05
Identities = 9/49 (18%), Positives = 23/49 (46%)
Query: 717 DSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQS-NEVLEEIEESK 764
D A + G ++P H + + ++ +E +D + +L +E+ +
Sbjct: 775 DQIACLENLAGEREIPDHPLVEQTLDDCLHEAMDSEGWLNLLRRMEQGQ 823
>MGI|MGI:2182303 [details] [associations]
symbol:Ddx50 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 50"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 MGI:MGI:2182303 GO:GO:0005886 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00680000100003 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OrthoDB:EOG46143T CTD:79009 KO:K13183
OMA:GDTEEGC EMBL:AF334104 IPI:IPI00117771 RefSeq:NP_444413.1
UniGene:Mm.114116 ProteinModelPortal:Q99MJ9 SMR:Q99MJ9
PhosphoSite:Q99MJ9 PaxDb:Q99MJ9 PRIDE:Q99MJ9
Ensembl:ENSMUST00000020270 GeneID:94213 KEGG:mmu:94213
UCSC:uc007fhp.1 InParanoid:Q99MJ9 NextBio:352175 Bgee:Q99MJ9
CleanEx:MM_DDX50 Genevestigator:Q99MJ9
GermOnline:ENSMUSG00000020076 Uniprot:Q99MJ9
Length = 734
Score = 106 (42.4 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 33/129 (25%), Positives = 63/129 (48%)
Query: 527 RCIAFCRSRK-LCELVLSYTREILEETAPHLVDSI-CVYRAGYVAEDRRRIE-RDFFGGK 583
R I FC ++K + E+ ++ PH+ + C++ G +A+ +R I + F G
Sbjct: 388 RAIIFCETKKNVTEMAMN----------PHIKQNAQCLH--GDIAQSQREITLKGFREGS 435
Query: 584 LCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLD 643
+ ATN G+D+ +D+ + P + S ++GR+GR R + V F P +
Sbjct: 436 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICV--CFYQPRE 493
Query: 644 QYFMKYPEK 652
+ ++Y E+
Sbjct: 494 RGQLRYVEQ 502
Score = 84 (34.6 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 33/158 (20%), Positives = 64/158 (40%)
Query: 239 ALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHD 298
++ + T LK G++ L+ Q ++ GK+++ T +GK+ + +P++E L +
Sbjct: 140 SISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRN 199
Query: 299 L-------SSSALYMFPTKXXXXXXXXXXXXMTKAFDASIDIGVYDGDTTQKDRMWLRDN 351
S L + PT+ +T+ + Y G + Q +R+
Sbjct: 200 QETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVAC---FYGGTSYQSQINQIRNG 256
Query: 352 ARLLITNPDMLHMSILPYHGQFSRI-LSNLRLIAFSLV 388
+L+ P + H Q R+ LS LR + V
Sbjct: 257 IDILVGTPGRIKD-----HLQSGRLDLSKLRHVVLDEV 289
>UNIPROTKB|P15043 [details] [associations]
symbol:recQ species:83333 "Escherichia coli K-12"
[GO:0046914 "transition metal ion binding" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IEA;IDA] [GO:0008270 "zinc ion binding" evidence=IMP]
[GO:0017116 "single-stranded DNA-dependent ATP-dependent DNA
helicase activity" evidence=IDA] [GO:0017117 "single-stranded
DNA-dependent ATP-dependent DNA helicase complex" evidence=IDA]
[GO:0006310 "DNA recombination" evidence=IEA;IDA;IMP] [GO:0006281
"DNA repair" evidence=IEA;IGI] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA;IGI] [GO:0005515 "protein binding"
evidence=IPI] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006200 "ATP
catabolic process" evidence=IDA] [GO:0043590 "bacterial nucleoid"
evidence=IDA] [GO:0030894 "replisome" evidence=IDA] [GO:0009432
"SOS response" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0008270 GO:GO:0006281 GO:GO:0046914
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
EMBL:M87049 eggNOG:COG0514 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0043590 GO:GO:0009432 GO:GO:0030894
GO:GO:0017116 GO:GO:0017117 EMBL:M30198 HOGENOM:HOG000044388
KO:K03654 TIGRFAMs:TIGR01389 RefSeq:YP_026263.3 RefSeq:YP_491620.1
PDB:1OYW PDB:1OYY PDB:1WUD PDBsum:1OYW PDBsum:1OYY PDBsum:1WUD
ProteinModelPortal:P15043 SMR:P15043 DIP:DIP-10656N IntAct:P15043
MINT:MINT-1223947 EnsemblBacteria:EBESCT00000003276
EnsemblBacteria:EBESCT00000015928 GeneID:12930625 GeneID:948318
KEGG:ecj:Y75_p3356 KEGG:eco:b3822 PATRIC:32123145 EchoBASE:EB0826
EcoGene:EG10833 OMA:YCLSRAK ProtClustDB:PRK11057
BioCyc:EcoCyc:EG10833-MONOMER BioCyc:ECOL316407:JW5855-MONOMER
BioCyc:MetaCyc:EG10833-MONOMER EvolutionaryTrace:P15043
Genevestigator:P15043 Uniprot:P15043
Length = 609
Score = 106 (42.4 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 32/112 (28%), Positives = 53/112 (47%)
Query: 540 LVLSYTREILEETAPHLVD---SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELG 596
++ +R +E+TA L S Y AG R ++ F L V AT A +G
Sbjct: 240 IIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMG 299
Query: 597 IDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMK 648
I+ ++ +H P +I S +Q+ GR+GR P+ A+ F P D +++
Sbjct: 300 INKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAML--FYDPADMAWLR 349
Score = 82 (33.9 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 20/54 (37%), Positives = 27/54 (50%)
Query: 240 LLDNTKSALKST-GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVL 292
L K L+ T G + Q E I L+G++ +V T GKSLCY +P L
Sbjct: 9 LESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPAL 62
>UNIPROTKB|F1PAG8 [details] [associations]
symbol:RECQL5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
CTD:9400 KO:K10902 InterPro:IPR010716 Pfam:PF06959 ProDom:PD120154
OMA:DPKIEEF EMBL:AAEX03006295 RefSeq:XP_540436.2
Ensembl:ENSCAFT00000007842 GeneID:483317 KEGG:cfa:483317
Uniprot:F1PAG8
Length = 989
Score = 116 (45.9 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 28/97 (28%), Positives = 49/97 (50%)
Query: 538 CELVLSYTREILEETAPHLVD---SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALE 594
C +V TRE E+ A L + Y AG A +R ++ ++ K+ + AT +
Sbjct: 258 CGIVYCRTREACEQLATELSYRGVNAKAYHAGLKASERTLVQNEWMEEKVPVIVATISFG 317
Query: 595 LGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPS 631
+G+D ++ H S+A +Q++GR+GR +PS
Sbjct: 318 MGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPS 354
Score = 76 (31.8 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 23/53 (43%), Positives = 28/53 (52%)
Query: 245 KSALKST-GISKLYSHQAESI-MASLAG-KNVVVATMTSSGKSLCYNLPVLEA 294
+S LK G + ES MA + G K+V V T +GKSLCY LP L A
Sbjct: 13 RSTLKKVFGFDSFKTPLQESATMAVVRGDKDVFVCMPTGAGKSLCYQLPALLA 65
>SGD|S000003220 [details] [associations]
symbol:HFM1 "Meiosis specific DNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0007129 "synapsis" evidence=IGI;IMP]
[GO:0003678 "DNA helicase activity" evidence=IDA] [GO:0007126
"meiosis" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006268 "DNA unwinding involved in
replication" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 SGD:S000003220 GO:GO:0005524
GO:GO:0005634 EMBL:BK006941 GO:GO:0046872 GO:GO:0003677 EMBL:X94357
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 GO:GO:0007131 GO:GO:0008026 GO:GO:0007129
GO:GO:0006268 KO:K15271 EMBL:Z72773 EMBL:U22156 RefSeq:NP_011263.2
ProteinModelPortal:P51979 SMR:P51979 DIP:DIP-2604N IntAct:P51979
MINT:MINT-426642 STRING:P51979 PaxDb:P51979 PeptideAtlas:P51979
EnsemblFungi:YGL251C GeneID:852641 KEGG:sce:YGL251C CYGD:YGL251c
GeneTree:ENSGT00550000074822 HOGENOM:HOG000093662 OMA:GNYECNH
OrthoDB:EOG4WWVSR NextBio:971894 Genevestigator:P51979
GermOnline:YGL251C Uniprot:P51979
Length = 1187
Score = 100 (40.3 bits), Expect = 2.1e-05, Sum P(3) = 2.1e-05
Identities = 47/214 (21%), Positives = 92/214 (42%)
Query: 395 IFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCM 454
+F ++ V++DE H K G +IL R+ +C ++ FV +AT N + +
Sbjct: 258 LFELVKLVLVDEIHTIKEKRGASLEVILTRMNTMCQNI-----RFVALSATVPNIEDLAL 312
Query: 455 ELANLSTL--ELIQNDGSPCAQKL--FVLWNPTSCLR-----SVLNKSQTDMDDTRNAAN 505
L + L ++ D S +L FV +C ++ N ++ + ++A N
Sbjct: 313 WLKTNNELPANILSFDESYRQVQLTKFVYGYSFNCKNDFQKDAIYNSKLIEIIE-KHADN 371
Query: 506 KTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRA 565
+ + L F +S+K C + + +IL E + I + A
Sbjct: 372 RPVLIFCPTRASTISTAKFLLNNHIFSKSKKRCNH--NPSDKILNEC---MQQGIAFHHA 426
Query: 566 GYVAEDRRRIERDFFGGKLCGVAATNALELGIDV 599
G EDR +E++F G + + +T+ L +G+++
Sbjct: 427 GISLEDRTAVEKEFLAGSINILCSTSTLAVGVNL 460
Score = 88 (36.0 bits), Expect = 2.1e-05, Sum P(3) = 2.1e-05
Identities = 37/168 (22%), Positives = 75/168 (44%)
Query: 227 SARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLC 286
SA+K + I L D+ + K T +K+ S SI S +N ++++ T SGK++
Sbjct: 116 SAKKCLSTTI---LPDSFRGVFKFTEFNKMQSEAFPSIYES--NENCIISSPTGSGKTVL 170
Query: 287 YNLPVL----EALSHDLSSSALYMFPTKXXXXXXXXXXXXMTKAFDASIDIGVYDGDTTQ 342
+ L +L E S ++ +Y+ PTK +F ++ +G+ DT+
Sbjct: 171 FELAILRLIKETNSDTNNTKIIYIAPTKSLCYEMYKNWF---PSF-VNLSVGMLTSDTSF 226
Query: 343 KDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTT 390
+ + ++IT P+ + + +SR+ ++L+ + T
Sbjct: 227 LETEKAK-KCNIIITTPEKWDLLTRRW-SDYSRLFELVKLVLVDEIHT 272
Score = 52 (23.4 bits), Expect = 2.1e-05, Sum P(3) = 2.1e-05
Identities = 31/150 (20%), Positives = 60/150 (40%)
Query: 635 YVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFG 694
YV+F D ++ + L + ++ ID N + A H +S +++
Sbjct: 579 YVSFHSVEDSQINQFCQYLLDTLVKVKIIDISNGEYKSTAYGNAMTRHYISFESMKQFIN 638
Query: 695 SGLSSGITTLKNRGYLSSDPSL----DSSAKIFEYIGHEKMPSHTISIRAIESERYEVID 750
+ + + N S + S+ + K+F+ I + + E ++ ++ID
Sbjct: 639 AKKFLSLQGILNLLATSEEFSVMRVRHNEKKLFKEINLSPLLKYPF---LTEKKQSQIID 695
Query: 751 MQSNEV--LEEIEESKAFFQVYEGAVYMHQ 778
S +V L + E F YEGA +HQ
Sbjct: 696 RVSQKVSLLIQYELGGLEFPSYEGASKLHQ 725
Score = 39 (18.8 bits), Expect = 0.00041, Sum P(3) = 0.00041
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 713 DPSLDSSAKIFEYIGHEKMPSHTISIRAI 741
+ SL S I +Y+ K S + A+
Sbjct: 986 EESLSSDDSILDYLNERKKSSKAVESAAV 1014
>MGI|MGI:104976 [details] [associations]
symbol:Ddx6 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 6"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISO] [GO:0016442 "RNA-induced silencing complex"
evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:104976 GO:GO:0005524
GO:GO:0003723 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 eggNOG:COG0513 GeneTree:ENSGT00530000063986
HOGENOM:HOG000268797 KO:K12614 OMA:YSHARMK InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG106685 OrthoDB:EOG4J1182 CTD:1656
EMBL:D50494 EMBL:AK054144 EMBL:AK148483 EMBL:BC021452 EMBL:AF038995
IPI:IPI00109932 RefSeq:NP_001104296.1 RefSeq:NP_031867.1
RefSeq:NP_851841.2 UniGene:Mm.267061 ProteinModelPortal:P54823
SMR:P54823 IntAct:P54823 STRING:P54823 PhosphoSite:P54823
PaxDb:P54823 PRIDE:P54823 Ensembl:ENSMUST00000170489 GeneID:13209
KEGG:mmu:13209 UCSC:uc009pdy.2 InParanoid:P54823 NextBio:283376
Bgee:P54823 CleanEx:MM_DDX6 Genevestigator:P54823
GermOnline:ENSMUSG00000032097 Uniprot:P54823
Length = 483
Score = 94 (38.1 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 41/142 (28%), Positives = 65/142 (45%)
Query: 547 EILEETAPHLVDSICVY-RAGYVAEDRRRIERDFFGGKLC-GVAATNALELGIDVGHIDV 604
E+L + L S C Y A E R R+ DF G LC + T+ GID+ ++V
Sbjct: 348 ELLAKKISQLGYS-CFYIHAKMRQEHRNRVFHDFRNG-LCRNLVCTDLFTRGIDIQAVNV 405
Query: 605 TLHLGFPGSIASLWQQAGRSGRRERPSLAV-YVAFEGPLDQYFMKYPEKLFKSPIECC-- 661
++ FP + + GRSGR LA+ + ++ D++ +K E+ + I+
Sbjct: 406 VINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYD---DRFNLKSIEEQLGTEIKPIPS 462
Query: 662 HIDAQNHKVLEQHLVCAALEHP 683
+ID + V E H A E P
Sbjct: 463 NIDKSLY-VAEYHSEPAEDEKP 483
Score = 90 (36.7 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 25/101 (24%), Positives = 45/101 (44%)
Query: 260 QAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSS-SALYMFPTKXXXXXXXX 318
Q ESI +L+G++++ +GKS Y +P+LE L + A+ + PT+
Sbjct: 123 QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQ 182
Query: 319 XXXXMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNP 359
++K + + G + D M L D ++I P
Sbjct: 183 ICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATP 223
>RGD|1564560 [details] [associations]
symbol:Ddx6 "DEAD (Asp-Glu-Ala-Asp) box helicase 6"
species:10116 "Rattus norvegicus" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA;ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA;ISO] [GO:0016442 "RNA-induced silencing
complex" evidence=IEA;ISO] [GO:0033962 "cytoplasmic mRNA processing
body assembly" evidence=IEA;ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1564560
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CH473975 GO:GO:0008026
GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4J1182 CTD:1656
IPI:IPI00558056 RefSeq:NP_001102762.1 UniGene:Rn.231713
Ensembl:ENSRNOT00000017391 GeneID:500988 KEGG:rno:500988
UCSC:RGD:1564560 NextBio:707903 Uniprot:D3ZD73
Length = 483
Score = 94 (38.1 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 41/142 (28%), Positives = 65/142 (45%)
Query: 547 EILEETAPHLVDSICVY-RAGYVAEDRRRIERDFFGGKLC-GVAATNALELGIDVGHIDV 604
E+L + L S C Y A E R R+ DF G LC + T+ GID+ ++V
Sbjct: 348 ELLAKKISQLGYS-CFYIHAKMRQEHRNRVFHDFRNG-LCRNLVCTDLFTRGIDIQAVNV 405
Query: 605 TLHLGFPGSIASLWQQAGRSGRRERPSLAV-YVAFEGPLDQYFMKYPEKLFKSPIECC-- 661
++ FP + + GRSGR LA+ + ++ D++ +K E+ + I+
Sbjct: 406 VINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYD---DRFNLKSIEEQLGTEIKPIPS 462
Query: 662 HIDAQNHKVLEQHLVCAALEHP 683
+ID + V E H A E P
Sbjct: 463 NIDKSLY-VAEYHSEPAEDEKP 483
Score = 90 (36.7 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 25/101 (24%), Positives = 45/101 (44%)
Query: 260 QAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSS-SALYMFPTKXXXXXXXX 318
Q ESI +L+G++++ +GKS Y +P+LE L + A+ + PT+
Sbjct: 123 QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQ 182
Query: 319 XXXXMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNP 359
++K + + G + D M L D ++I P
Sbjct: 183 ICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATP 223
>UNIPROTKB|F1MMK3 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00680000100003 CTD:79009 KO:K13183
OMA:GDTEEGC EMBL:DAAA02061828 IPI:IPI00689334 RefSeq:NP_001192982.1
UniGene:Bt.55841 PRIDE:F1MMK3 Ensembl:ENSBTAT00000022002
GeneID:534331 KEGG:bta:534331 NextBio:20876363 ArrayExpress:F1MMK3
Uniprot:F1MMK3
Length = 737
Score = 105 (42.0 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 32/129 (24%), Positives = 63/129 (48%)
Query: 527 RCIAFCRSRK-LCELVLSYTREILEETAPHLVDSI-CVYRAGYVAEDRRRIE-RDFFGGK 583
R I FC ++K + E+ ++ PH+ + C++ G +A+ +R I + F G
Sbjct: 391 RAIIFCETKKNVTEMAMN----------PHIKQNAQCLH--GDIAQSQREITLKGFREGS 438
Query: 584 LCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLD 643
+ ATN G+D+ +D+ + P + S ++GR+GR R + + F P +
Sbjct: 439 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICI--CFYQPRE 496
Query: 644 QYFMKYPEK 652
+ ++Y E+
Sbjct: 497 RGQLRYVEQ 505
Score = 83 (34.3 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 33/152 (21%), Positives = 61/152 (40%)
Query: 242 DNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSS 301
+ T LK G++ L+ Q ++ GK+++ T +GK+ + +P++E L + +
Sbjct: 146 EETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQET 205
Query: 302 SALYMFPTKXXXXXXXXXXXXMTKAF-DASIDIGV---YDGDTTQKDRMWLRDNARLLIT 357
P + K F D + + V Y G + Q +R+ +L+
Sbjct: 206 IKKSRSPKVLVLAPTRELANQVAKDFKDVTRKLSVACFYGGTSYQSQINHIRNGIDILVG 265
Query: 358 NPDMLHMSILPYHGQFSRI-LSNLRLIAFSLV 388
P + H Q R+ LS LR + V
Sbjct: 266 TPGRIKD-----HLQSGRLDLSKLRHVVLDEV 292
>UNIPROTKB|Q9BQ39 [details] [associations]
symbol:DDX50 "ATP-dependent RNA helicase DDX50"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005730
EMBL:CH471083 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:AL359844 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OrthoDB:EOG46143T EMBL:AF334103 EMBL:BC000210
EMBL:BC000272 EMBL:BC018637 IPI:IPI00031554 RefSeq:NP_076950.1
UniGene:Hs.522984 PDB:2E29 PDBsum:2E29 ProteinModelPortal:Q9BQ39
SMR:Q9BQ39 IntAct:Q9BQ39 STRING:Q9BQ39 PhosphoSite:Q9BQ39
DMDM:55976580 SWISS-2DPAGE:Q9BQ39 PaxDb:Q9BQ39 PeptideAtlas:Q9BQ39
PRIDE:Q9BQ39 DNASU:79009 Ensembl:ENST00000373585 GeneID:79009
KEGG:hsa:79009 UCSC:uc001jou.3 CTD:79009 GeneCards:GC10P070661
HGNC:HGNC:17906 HPA:HPA037388 MIM:610373 neXtProt:NX_Q9BQ39
PharmGKB:PA134948525 InParanoid:Q9BQ39 KO:K13183 OMA:GDTEEGC
PhylomeDB:Q9BQ39 ChiTaRS:DDX50 EvolutionaryTrace:Q9BQ39
GenomeRNAi:79009 NextBio:67657 ArrayExpress:Q9BQ39 Bgee:Q9BQ39
CleanEx:HS_DDX50 Genevestigator:Q9BQ39 Uniprot:Q9BQ39
Length = 737
Score = 105 (42.0 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 32/129 (24%), Positives = 63/129 (48%)
Query: 527 RCIAFCRSRK-LCELVLSYTREILEETAPHLVDSI-CVYRAGYVAEDRRRIE-RDFFGGK 583
R I FC ++K + E+ ++ PH+ + C++ G +A+ +R I + F G
Sbjct: 391 RAIIFCETKKNVTEMAMN----------PHIKQNAQCLH--GDIAQSQREITLKGFREGS 438
Query: 584 LCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLD 643
+ ATN G+D+ +D+ + P + S ++GR+GR R + + F P +
Sbjct: 439 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICI--CFYQPRE 496
Query: 644 QYFMKYPEK 652
+ ++Y E+
Sbjct: 497 RGQLRYVEQ 505
Score = 83 (34.3 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 33/155 (21%), Positives = 62/155 (40%)
Query: 242 DNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDL-- 299
+ T LK G++ L+ Q ++ GK+++ T +GK+ + +P++E L +
Sbjct: 146 EETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQET 205
Query: 300 -----SSSALYMFPTKXXXXXXXXXXXXMTKAFDASIDIGVYDGDTTQKDRMWLRDNARL 354
S L + PT+ +T+ + Y G + Q +R+ +
Sbjct: 206 IKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVAC---FYGGTSYQSQINHIRNGIDI 262
Query: 355 LITNPDMLHMSILPYHGQFSRI-LSNLRLIAFSLV 388
L+ P + H Q R+ LS LR + V
Sbjct: 263 LVGTPGRIKD-----HLQSGRLDLSKLRHVVLDEV 292
>UNIPROTKB|Q9KLH6 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 93 (37.8 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 35/133 (26%), Positives = 56/133 (42%)
Query: 238 DALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL-- 295
D+ L NT S L GI+ Q ++I L GK+V+ T +GK+ + LP+++
Sbjct: 14 DSRLLNTLSEL---GIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIE 70
Query: 296 ---SHDLSSS---ALYMFPTKXXXXXXXXXXXXMTKAFDASIDIGVYDGDTTQKDRMWLR 349
+ +S AL + PT+ K + I + VY G + + LR
Sbjct: 71 QPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKI-VAVYGGTSMKVQLNHLR 129
Query: 350 DNARLLITNPDML 362
+LI P L
Sbjct: 130 GGVDILIATPGRL 142
Score = 89 (36.4 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 40/188 (21%), Positives = 79/188 (42%)
Query: 451 EHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTR-NAANKTSS 509
+ +++ + L+ + SP Q LF S +++V + D + + +N T+
Sbjct: 165 DRMLDMGFMPDLQRVLRRLSPLRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAE 224
Query: 510 PISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHL-VDSI-CVYRAGY 567
+ ++ Y + + L LV + TR+ + A L +D I V G
Sbjct: 225 TVQQMVYPVDKKRKRELLSYLIGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGD 284
Query: 568 VAED-RRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGR 626
++ R++ DF GK+ + AT+ G+D+ ++ ++ P + GR+GR
Sbjct: 285 KSQGARQKALDDFKAGKVRALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGR 344
Query: 627 RERPSLAV 634
LAV
Sbjct: 345 AGLAGLAV 352
>TIGR_CMR|VC_A0768 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 93 (37.8 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 35/133 (26%), Positives = 56/133 (42%)
Query: 238 DALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL-- 295
D+ L NT S L GI+ Q ++I L GK+V+ T +GK+ + LP+++
Sbjct: 14 DSRLLNTLSEL---GIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIE 70
Query: 296 ---SHDLSSS---ALYMFPTKXXXXXXXXXXXXMTKAFDASIDIGVYDGDTTQKDRMWLR 349
+ +S AL + PT+ K + I + VY G + + LR
Sbjct: 71 QPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKI-VAVYGGTSMKVQLNHLR 129
Query: 350 DNARLLITNPDML 362
+LI P L
Sbjct: 130 GGVDILIATPGRL 142
Score = 89 (36.4 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 40/188 (21%), Positives = 79/188 (42%)
Query: 451 EHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTR-NAANKTSS 509
+ +++ + L+ + SP Q LF S +++V + D + + +N T+
Sbjct: 165 DRMLDMGFMPDLQRVLRRLSPLRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAE 224
Query: 510 PISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHL-VDSI-CVYRAGY 567
+ ++ Y + + L LV + TR+ + A L +D I V G
Sbjct: 225 TVQQMVYPVDKKRKRELLSYLIGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGD 284
Query: 568 VAED-RRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGR 626
++ R++ DF GK+ + AT+ G+D+ ++ ++ P + GR+GR
Sbjct: 285 KSQGARQKALDDFKAGKVRALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGR 344
Query: 627 RERPSLAV 634
LAV
Sbjct: 345 AGLAGLAV 352
>ZFIN|ZDB-GENE-030131-6611 [details] [associations]
symbol:wu:fk48d07 "wu:fk48d07" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-030131-6611 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00530000063986 KO:K12614 InterPro:IPR014014
PROSITE:PS51195 OMA:HIDPARF EMBL:CR391937 IPI:IPI00901625
RefSeq:XP_001340860.1 UniGene:Dr.104819 UniGene:Dr.127773
Ensembl:ENSDART00000114495 GeneID:100007313 KEGG:dre:100007313
NextBio:20787456 Uniprot:E7F1G8
Length = 483
Score = 96 (38.9 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 29/90 (32%), Positives = 44/90 (48%)
Query: 547 EILEETAPHLVDSICVY-RAGYVAEDRRRIERDFFGGKLC-GVAATNALELGIDVGHIDV 604
E+L + L S C Y A + E R R+ DF G LC + T+ GID+ ++V
Sbjct: 340 ELLAKKITQLGYS-CFYIHAKMMQEYRNRVFHDFRNG-LCRNLVCTDLFTRGIDIQAVNV 397
Query: 605 TLHLGFPGSIASLWQQAGRSGRRERPSLAV 634
++ FP + + + GRSGR LA+
Sbjct: 398 VINFDFPKNAETYLHRIGRSGRYGHLGLAI 427
Score = 87 (35.7 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 35/143 (24%), Positives = 57/143 (39%)
Query: 221 VHVEDISARKAVLVEIPDALLDNTK-SALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
V D++A K E D L + G K Q ESI +L+G++++
Sbjct: 77 VRTTDVTATKGN--EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKN 134
Query: 280 SSGKSLCYNLPVLEALSHDLSSS---ALYMFPTKXXXXXXXXXXXXMTKAFDASIDIGVY 336
+GKS Y +P+LE + DL A+ + PT+ M+K +
Sbjct: 135 GTGKSGAYLIPLLERI--DLKKDYIQAIVLVPTRELALQVSQISINMSKHLGGIKVMATT 192
Query: 337 DGDTTQKDRMWLRDNARLLITNP 359
G + D M L + ++I P
Sbjct: 193 GGTNLRDDIMRLDEIVHVIIATP 215
>UNIPROTKB|P54824 [details] [associations]
symbol:ddx6 "ATP-dependent RNA helicase ddx6" species:8355
"Xenopus laevis" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003723
GO:GO:0030529 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG106685 CTD:1656 EMBL:X92421 EMBL:BC170228 EMBL:BC170230
RefSeq:NP_001083721.1 UniGene:Xl.157 IntAct:P54824 PRIDE:P54824
GeneID:399080 KEGG:xla:399080 Xenbase:XB-GENE-922237 Uniprot:P54824
Length = 481
Score = 93 (37.8 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 39/133 (29%), Positives = 62/133 (46%)
Query: 547 EILEETAPHLVDSICVY-RAGYVAEDRRRIERDFFGGKLC-GVAATNALELGIDVGHIDV 604
E+L + L S C Y A E R R+ DF G LC + T+ GID+ ++V
Sbjct: 347 ELLAKKISQLGYS-CFYIHAKMRQEHRNRVFHDFRNG-LCRNLVCTDLFTRGIDIQAVNV 404
Query: 605 TLHLGFPGSIASLWQQAGRSGRRERPSLAV-YVAFEGPLDQYFMKYPEKLFKSPIECC-- 661
++ FP + + GRSGR LA+ + ++ D++ +K E+ + I+
Sbjct: 405 VINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYD---DRFNLKSIEEQLGTEIKPIPS 461
Query: 662 HIDAQNHKVLEQH 674
ID +N V E H
Sbjct: 462 SID-KNLYVAEYH 473
Score = 90 (36.7 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 27/103 (26%), Positives = 46/103 (44%)
Query: 260 QAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSS---ALYMFPTKXXXXXX 316
Q ESI +L+G++++ +GKS Y +P+LE L DL A+ + PT+
Sbjct: 122 QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERL--DLKKDCIQAMVIVPTRELALQV 179
Query: 317 XXXXXXMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNP 359
++K + + G + D M L D ++I P
Sbjct: 180 SQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATP 222
>UNIPROTKB|F1NWK5 [details] [associations]
symbol:F1NWK5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=IEA] [GO:0031965 "nuclear membrane" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0031965 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016591 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0008026 InterPro:IPR010716 Pfam:PF06959 ProDom:PD120154
OMA:DPKIEEF EMBL:AADN02029969 EMBL:AADN02029968 IPI:IPI00812208
Ensembl:ENSGALT00000003814 ArrayExpress:F1NWK5 Uniprot:F1NWK5
Length = 1023
Score = 115 (45.5 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 52/210 (24%), Positives = 89/210 (42%)
Query: 429 CSHVYGSD--PSFV-FSTATSANPREHCMELANLSTLELIQNDGSPCAQ-KLFVLWNPTS 484
C +G D P ++ T + P C+ L +T + +Q+D + K + T
Sbjct: 166 CVSQWGHDFRPDYLRLGTLRTRIPNTPCVALTATATKQ-VQDDIVTALKLKQPLATFKTP 224
Query: 485 CLRSVLNKS-QTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRC-IAFCRSRKLCE-LV 541
C RS L Q T AN + + V G C I +CR R +C+ L
Sbjct: 225 CFRSNLFYDVQFKELLTDPYANLKDFCLKALEVKNTTGVYSG--CGIVYCRMRDVCDQLA 282
Query: 542 LSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGH 601
+ + ++ A Y AG A DR ++ ++ K+ + AT + +G+D +
Sbjct: 283 IELSYRGVKAKA---------YHAGLKAADRTSVQNEWMEEKIPVIVATISFGMGVDKAN 333
Query: 602 IDVTLHLGFPGSIASLWQQAGRSGRRERPS 631
+ H S+A +Q++GR+GR +PS
Sbjct: 334 VRFVAHWNIAKSMAGYYQESGRAGRDGKPS 363
Score = 75 (31.5 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 20/48 (41%), Positives = 27/48 (56%)
Query: 258 SHQAESIMASLAG-KNVVVATMTSSGKSLCYNLPVLEALSHDLSSSAL 304
S Q + MA + G K+V V T +GKSLCY LP + A+ + S L
Sbjct: 37 SLQESATMAVVRGEKDVFVCMPTGAGKSLCYQLPAVLAVGITIVISPL 84
>CGD|CAL0004296 [details] [associations]
symbol:SGS1 species:5476 "Candida albicans" [GO:0006974
"response to DNA damage stimulus" evidence=IMP] [GO:0001302
"replicative cell aging" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0031422 "RecQ helicase-Topo III complex"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0044182
"filamentous growth of a population of unicellular organisms"
evidence=IMP] [GO:0031860 "telomeric 3' overhang formation"
evidence=IEA] [GO:0000706 "meiotic DNA double-strand break
processing" evidence=IEA] [GO:0006268 "DNA unwinding involved in
replication" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0031573 "intra-S DNA damage
checkpoint" evidence=IEA] [GO:0031292 "gene conversion at
mating-type locus, DNA double-strand break processing"
evidence=IEA] [GO:0000722 "telomere maintenance via recombination"
evidence=IEA] [GO:0010947 "negative regulation of meiotic joint
molecule formation" evidence=IEA] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=IEA] [GO:0045132
"meiotic chromosome segregation" evidence=IEA] [GO:0030447
"filamentous growth" evidence=IMP] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00490 SMART:SM00956
CGD:CAL0004296 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0003676
GO:GO:0006974 GO:GO:0005622 GO:GO:0006310 EMBL:AACQ01000059
EMBL:AACQ01000058 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 eggNOG:COG0514 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0044182 RefSeq:XP_717059.1
RefSeq:XP_717138.1 ProteinModelPortal:Q5A5R4 STRING:Q5A5R4
GeneID:3641258 GeneID:3641294 KEGG:cal:CaO19.12795
KEGG:cal:CaO19.5335 Uniprot:Q5A5R4
Length = 1189
Score = 112 (44.5 bits), Expect = 3.0e-05, Sum P(4) = 3.0e-05
Identities = 47/170 (27%), Positives = 81/170 (47%)
Query: 506 KTSSPISEVS-YLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYR 564
K S+ + E+ Y+ + G I +C S++ CE +T L E L S Y
Sbjct: 669 KKSNCLLEIKDYILSRF--SGKSGIIYCHSKQSCE----HTSMKLNEYG--LKTSF--YH 718
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
AG A+ R I++ + K+ + AT A +GID + +HL P ++ +Q+ GR+
Sbjct: 719 AGMSADKRFNIQKRWQENKIQVICATIAFGMGIDKPDVRFVIHLYLPRTLEGYYQETGRA 778
Query: 625 GRRERPSLAV-YVAFEGPLD-QYFMKYPEKLFKSPIECCHIDAQNHKVLE 672
GR S V Y ++ Q ++ E+L +S E H+ A+ +V++
Sbjct: 779 GRDGNFSECVMYYCYKDARSLQNLIQRDEELSESGRES-HL-AKLRQVIQ 826
Score = 93 (37.8 bits), Expect = 3.0e-05, Sum P(4) = 3.0e-05
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 238 DALLDNTKSALKSTGISKLY-SHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVL 292
+ +D S L + K + ++Q E++ A+L+ K+V V T GKSLCY LP L
Sbjct: 447 EPFMDEVHSILNNVFKLKSFRANQLEAVSATLSNKDVFVLMPTGGGKSLCYQLPAL 502
Score = 38 (18.4 bits), Expect = 3.0e-05, Sum P(4) = 3.0e-05
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 384 AFSLVTTEVYLIFLFIRFVVIDEAH 408
A + T++Y R VVIDEAH
Sbjct: 575 AMQTIMTKLYNNNQLAR-VVIDEAH 598
Score = 38 (18.4 bits), Expect = 3.0e-05, Sum P(4) = 3.0e-05
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 797 QKADLKYFTKTRDYTDIHVSGGNNA---YATKISKD 829
+K L+YF +T D + H N + T + KD
Sbjct: 836 RKQVLQYFNETFDPANCHKQCDNCRDYNHVTSVEKD 871
>UNIPROTKB|Q5A5R4 [details] [associations]
symbol:SGS1 "Putative uncharacterized protein SGS1"
species:237561 "Candida albicans SC5314" [GO:0001302 "replicative
cell aging" evidence=IMP] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0044182 "filamentous growth of a population of
unicellular organisms" evidence=IMP] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00490 SMART:SM00956
CGD:CAL0004296 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0003676
GO:GO:0006974 GO:GO:0005622 GO:GO:0006310 EMBL:AACQ01000059
EMBL:AACQ01000058 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 eggNOG:COG0514 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0044182 RefSeq:XP_717059.1
RefSeq:XP_717138.1 ProteinModelPortal:Q5A5R4 STRING:Q5A5R4
GeneID:3641258 GeneID:3641294 KEGG:cal:CaO19.12795
KEGG:cal:CaO19.5335 Uniprot:Q5A5R4
Length = 1189
Score = 112 (44.5 bits), Expect = 3.0e-05, Sum P(4) = 3.0e-05
Identities = 47/170 (27%), Positives = 81/170 (47%)
Query: 506 KTSSPISEVS-YLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYR 564
K S+ + E+ Y+ + G I +C S++ CE +T L E L S Y
Sbjct: 669 KKSNCLLEIKDYILSRF--SGKSGIIYCHSKQSCE----HTSMKLNEYG--LKTSF--YH 718
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
AG A+ R I++ + K+ + AT A +GID + +HL P ++ +Q+ GR+
Sbjct: 719 AGMSADKRFNIQKRWQENKIQVICATIAFGMGIDKPDVRFVIHLYLPRTLEGYYQETGRA 778
Query: 625 GRRERPSLAV-YVAFEGPLD-QYFMKYPEKLFKSPIECCHIDAQNHKVLE 672
GR S V Y ++ Q ++ E+L +S E H+ A+ +V++
Sbjct: 779 GRDGNFSECVMYYCYKDARSLQNLIQRDEELSESGRES-HL-AKLRQVIQ 826
Score = 93 (37.8 bits), Expect = 3.0e-05, Sum P(4) = 3.0e-05
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 238 DALLDNTKSALKSTGISKLY-SHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVL 292
+ +D S L + K + ++Q E++ A+L+ K+V V T GKSLCY LP L
Sbjct: 447 EPFMDEVHSILNNVFKLKSFRANQLEAVSATLSNKDVFVLMPTGGGKSLCYQLPAL 502
Score = 38 (18.4 bits), Expect = 3.0e-05, Sum P(4) = 3.0e-05
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 384 AFSLVTTEVYLIFLFIRFVVIDEAH 408
A + T++Y R VVIDEAH
Sbjct: 575 AMQTIMTKLYNNNQLAR-VVIDEAH 598
Score = 38 (18.4 bits), Expect = 3.0e-05, Sum P(4) = 3.0e-05
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 797 QKADLKYFTKTRDYTDIHVSGGNNA---YATKISKD 829
+K L+YF +T D + H N + T + KD
Sbjct: 836 RKQVLQYFNETFDPANCHKQCDNCRDYNHVTSVEKD 871
>WB|WBGene00006944 [details] [associations]
symbol:wrn-1 species:6239 "Caenorhabditis elegans"
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA;IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040018 "positive regulation of
multicellular organism growth" evidence=IMP] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0018991 "oviposition"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0007049 "cell cycle" evidence=IMP] [GO:0010212
"response to ionizing radiation" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0005694 "chromosome" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006259 "DNA metabolic
process" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005662 "DNA replication factor A complex" evidence=IDA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0008340 GO:GO:0002009
GO:GO:0040007 GO:GO:0018991 GO:GO:0005694 GO:GO:0005654
GO:GO:0002119 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0010171 GO:GO:0040018 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0010212 GO:GO:0007049 GO:GO:0006310 GO:GO:0040035
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 KO:K10900 EMBL:FO080970
PIR:T16087 RefSeq:NP_495324.2 ProteinModelPortal:Q19546 SMR:Q19546
IntAct:Q19546 MINT:MINT-226609 STRING:Q19546 PaxDb:Q19546
EnsemblMetazoa:F18C5.2 GeneID:174081 KEGG:cel:CELE_F18C5.2
UCSC:F18C5.2 CTD:174081 WormBase:F18C5.2 HOGENOM:HOG000016918
InParanoid:Q19546 OMA:CSGFDRP NextBio:882429 Uniprot:Q19546
Length = 1056
Score = 127 (49.8 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 36/121 (29%), Positives = 57/121 (47%)
Query: 529 IAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVA 588
I +C+++++ + V R I +A H Y AG R + DF K+ +
Sbjct: 450 IIYCQTKQMVDDVNCVLRRIGVRSA-H-------YHAGLTKNQREKAHTDFMRDKITTIV 501
Query: 589 ATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMK 648
AT A +GID + +H G P +I S +Q+ GR+GR PS+ F P D +K
Sbjct: 502 ATVAFGMGIDKPDVRNVIHYGCPNNIESYYQEIGRAGRDGSPSICR--VFWAPKDLNTIK 559
Query: 649 Y 649
+
Sbjct: 560 F 560
Score = 62 (26.9 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 268 LAGKNVVVATMTSSGKSLCYNLPVL 292
L GK+ V T GKS+CY LP L
Sbjct: 240 LGGKDQFVLMSTGYGKSVCYQLPSL 264
>WB|WBGene00021277 [details] [associations]
symbol:Y23H5B.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003723 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268801 GeneTree:ENSGT00550000074980 OMA:ADKVIEP
HSSP:P10081 EMBL:FO080963 RefSeq:NP_490989.1
ProteinModelPortal:Q9N478 SMR:Q9N478 STRING:Q9N478 PaxDb:Q9N478
EnsemblMetazoa:Y23H5B.6 GeneID:171810 KEGG:cel:CELE_Y23H5B.6
UCSC:Y23H5B.6 CTD:171810 WormBase:Y23H5B.6 InParanoid:Q9N478
NextBio:872791 Uniprot:Q9N478
Length = 732
Score = 104 (41.7 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 52/216 (24%), Positives = 89/216 (41%)
Query: 244 TKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL-----SHD 298
T LK +K Q ++I SL G +VV A T SGK+L +PVLEAL S D
Sbjct: 87 TLEGLKDNDYTKPTEIQRDTIAYSLTGSDVVGAAKTGSGKTLALVIPVLEALWRAKWSPD 146
Query: 299 LSSSALYMFPTKXXXXXXXXXXXXMTKAFDASIDIGVYDGDTT-QKDRMWLRDNARLLIT 357
AL + PT+ + S + + D +++R+ +++
Sbjct: 147 YGLGALIISPTRELALQTFSTINAVGAHHGFSCGLVIGGSDVAFERNRI---SGINIIVC 203
Query: 358 NPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGA--FG 415
P L + + + Q S +L+++ + + F +I+ A + F
Sbjct: 204 TPGRL-LQHMDENAQMS--CDSLQVLVLDEADRMLDMGFSKQLNSIINNLPAERQTLLFS 260
Query: 416 CHTALILRRLCRLCSHVYGSDPSFV--FSTATSANP 449
++ LCR+C++ DP FV A++A P
Sbjct: 261 ATQTRNVKDLCRVCTN----DPVFVSVHENASAATP 292
Score = 82 (33.9 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 63/272 (23%), Positives = 114/272 (41%)
Query: 502 NAANKTSSPISEVSYLFAEMVQHGLRCI-AFCRS-RKLCELV-LSYTRE--ILEETAPHL 556
NA+ T + + SY+ E +H + + +F + RK LV +S ++ L E L
Sbjct: 286 NASAATPDNLKQ-SYVIVEE-EHKINALWSFIEAHRKKKSLVFVSSCKQARFLTEAFSQL 343
Query: 557 VDSICVYRAGYVAEDRRRIER--DFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSI 614
+ V ++RIE F K + AT+ G+D HID + + P I
Sbjct: 344 RPGLPVMGLWGTMNQKKRIETFTKFDESKAAVLIATDVASRGLDFEHIDWVIQVDCPAQI 403
Query: 615 ASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIE--CCHIDAQNHKVLE 672
+ GRS R + ++ + + K EK PIE H DA + ++
Sbjct: 404 DDYIHRVGRSARMDDSGNSLLMVSPSQEEAMIGKL-EK-HSIPIEELKIHPDAMSDVRVK 461
Query: 673 QHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMP 732
+ A + Y +K + L S I T+K++ + ++D++A + + G +P
Sbjct: 462 LRAILAESQELKE--YAQKSIVAYLRS-IYTMKDKKVFDVE-AIDAAA-LADSFGLVSVP 516
Query: 733 SHTISIRAIESERYEVID-MQSNEVLEEIEES 763
+R + + + + + EV EE EE+
Sbjct: 517 R----VRFLNKKAKKSGEKLMEKEVKEEEEEA 544
>TIGR_CMR|SPO_0107 [details] [associations]
symbol:SPO_0107 "ATP-dependent DNA helicase RecQ"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00490 SMART:SM00956 GO:GO:0005524
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
GO:GO:0009432 HOGENOM:HOG000044388 KO:K03654 TIGRFAMs:TIGR01389
OMA:YCLSRAK RefSeq:YP_165381.1 ProteinModelPortal:Q5LWQ8
GeneID:3194995 KEGG:sil:SPO0107 PATRIC:23373451
ProtClustDB:CLSK933158 Uniprot:Q5LWQ8
Length = 679
Score = 113 (44.8 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 41/121 (33%), Positives = 52/121 (42%)
Query: 523 QHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGG 582
+ G I +C +R E + RE H S C Y G AEDRR +E F
Sbjct: 225 RRGQSGIVYCGTRAKTETLAQALRE-----DGH---SACHYHGGMEAEDRRIVETRFARE 276
Query: 583 KLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPL 642
V AT A +GID I H P SI + +Q+ GR+GR P A + GP
Sbjct: 277 DGLIVVATVAFGMGIDKPDIRWVAHADLPKSIEAYYQEIGRAGRDGGP--AETLTLFGPD 334
Query: 643 D 643
D
Sbjct: 335 D 335
Score = 71 (30.1 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 260 QAESIMASLAGKNVVVATMTSSGKSLCYNLPVL 292
Q E A G+NV+ T GKSLC+ LP L
Sbjct: 21 QEEIAQAVAEGENVLAIMPTGGGKSLCFQLPAL 53
>UNIPROTKB|E1C8R1 [details] [associations]
symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00530000063986 KO:K12614 InterPro:IPR014014
PROSITE:PS51195 UniGene:Gga.2331 CTD:1656 EMBL:AADN02058042
EMBL:AADN02058043 IPI:IPI00818395 RefSeq:NP_001006319.2
PRIDE:E1C8R1 Ensembl:ENSGALT00000040594 GeneID:419783
KEGG:gga:419783 NextBio:20822787 ArrayExpress:E1C8R1 Uniprot:E1C8R1
Length = 483
Score = 91 (37.1 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 33/116 (28%), Positives = 55/116 (47%)
Query: 547 EILEETAPHLVDSICVY-RAGYVAEDRRRIERDFFGGKLC-GVAATNALELGIDVGHIDV 604
E+L + L S C Y A E R R+ DF G LC + T+ GID+ ++V
Sbjct: 348 ELLAKKISQLGYS-CFYIHAKMRQEHRNRVFHDFRNG-LCRNLVCTDLFTRGIDIQAVNV 405
Query: 605 TLHLGFPGSIASLWQQAGRSGRRERPSLAV-YVAFEGPLDQYFMKYPEKLFKSPIE 659
++ FP + + GRSGR LA+ + ++ D++ +K E+ + I+
Sbjct: 406 VINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYD---DRFNLKSIEEQLGTEIK 458
Score = 90 (36.7 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 25/101 (24%), Positives = 45/101 (44%)
Query: 260 QAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSS-SALYMFPTKXXXXXXXX 318
Q ESI +L+G++++ +GKS Y +P+LE L + A+ + PT+
Sbjct: 123 QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQ 182
Query: 319 XXXXMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNP 359
++K + + G + D M L D ++I P
Sbjct: 183 ICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATP 223
>UNIPROTKB|Q5ZKB9 [details] [associations]
symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962 GO:GO:0008026
eggNOG:COG0513 GeneTree:ENSGT00530000063986 HOGENOM:HOG000268797
OMA:YSHARMK InterPro:IPR014014 PROSITE:PS51195 HSSP:P26196
EMBL:AJ720165 IPI:IPI00595692 UniGene:Gga.2331
ProteinModelPortal:Q5ZKB9 SMR:Q5ZKB9 Ensembl:ENSGALT00000012405
HOVERGEN:HBG106685 InParanoid:Q5ZKB9 OrthoDB:EOG4J1182
ArrayExpress:Q5ZKB9 Uniprot:Q5ZKB9
Length = 483
Score = 91 (37.1 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 33/116 (28%), Positives = 55/116 (47%)
Query: 547 EILEETAPHLVDSICVY-RAGYVAEDRRRIERDFFGGKLC-GVAATNALELGIDVGHIDV 604
E+L + L S C Y A E R R+ DF G LC + T+ GID+ ++V
Sbjct: 348 ELLAKKISQLGYS-CFYIHAKMRQEHRNRVFHDFRNG-LCRNLVCTDLFTRGIDIQAVNV 405
Query: 605 TLHLGFPGSIASLWQQAGRSGRRERPSLAV-YVAFEGPLDQYFMKYPEKLFKSPIE 659
++ FP + + GRSGR LA+ + ++ D++ +K E+ + I+
Sbjct: 406 VINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYD---DRFNLKSIEEQLGTEIK 458
Score = 90 (36.7 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 25/101 (24%), Positives = 45/101 (44%)
Query: 260 QAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSS-SALYMFPTKXXXXXXXX 318
Q ESI +L+G++++ +GKS Y +P+LE L + A+ + PT+
Sbjct: 123 QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQ 182
Query: 319 XXXXMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNP 359
++K + + G + D M L D ++I P
Sbjct: 183 ICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATP 223
>UNIPROTKB|E1BDM8 [details] [associations]
symbol:DDX6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:DAAA02040478
EMBL:DAAA02040479 IPI:IPI00697295 RefSeq:NP_001137339.1
UniGene:Bt.12357 PRIDE:E1BDM8 Ensembl:ENSBTAT00000011952
GeneID:513906 KEGG:bta:513906 NextBio:20871085 Uniprot:E1BDM8
Length = 483
Score = 91 (37.1 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 33/116 (28%), Positives = 55/116 (47%)
Query: 547 EILEETAPHLVDSICVY-RAGYVAEDRRRIERDFFGGKLC-GVAATNALELGIDVGHIDV 604
E+L + L S C Y A E R R+ DF G LC + T+ GID+ ++V
Sbjct: 348 ELLAKKISQLGYS-CFYIHAKMRQEHRNRVFHDFRNG-LCRNLVCTDLFTRGIDIQAVNV 405
Query: 605 TLHLGFPGSIASLWQQAGRSGRRERPSLAV-YVAFEGPLDQYFMKYPEKLFKSPIE 659
++ FP + + GRSGR LA+ + ++ D++ +K E+ + I+
Sbjct: 406 VINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYD---DRFNLKSIEEQLGTEIK 458
Score = 90 (36.7 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 25/101 (24%), Positives = 45/101 (44%)
Query: 260 QAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSS-SALYMFPTKXXXXXXXX 318
Q ESI +L+G++++ +GKS Y +P+LE L + A+ + PT+
Sbjct: 123 QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQ 182
Query: 319 XXXXMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNP 359
++K + + G + D M L D ++I P
Sbjct: 183 ICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATP 223
>UNIPROTKB|E2RR01 [details] [associations]
symbol:DDX6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:AAEX03003444
RefSeq:XP_849975.1 Ensembl:ENSCAFT00000019743 GeneID:479414
KEGG:cfa:479414 NextBio:20854600 Uniprot:E2RR01
Length = 483
Score = 91 (37.1 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 33/116 (28%), Positives = 55/116 (47%)
Query: 547 EILEETAPHLVDSICVY-RAGYVAEDRRRIERDFFGGKLC-GVAATNALELGIDVGHIDV 604
E+L + L S C Y A E R R+ DF G LC + T+ GID+ ++V
Sbjct: 348 ELLAKKISQLGYS-CFYIHAKMRQEHRNRVFHDFRNG-LCRNLVCTDLFTRGIDIQAVNV 405
Query: 605 TLHLGFPGSIASLWQQAGRSGRRERPSLAV-YVAFEGPLDQYFMKYPEKLFKSPIE 659
++ FP + + GRSGR LA+ + ++ D++ +K E+ + I+
Sbjct: 406 VINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYD---DRFNLKSIEEQLGTEIK 458
Score = 90 (36.7 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 25/101 (24%), Positives = 45/101 (44%)
Query: 260 QAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSS-SALYMFPTKXXXXXXXX 318
Q ESI +L+G++++ +GKS Y +P+LE L + A+ + PT+
Sbjct: 123 QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQ 182
Query: 319 XXXXMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNP 359
++K + + G + D M L D ++I P
Sbjct: 183 ICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATP 223
>UNIPROTKB|P26196 [details] [associations]
symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0004386 "helicase activity" evidence=TAS]
[GO:0003724 "RNA helicase activity" evidence=TAS] [GO:0016442
"RNA-induced silencing complex" evidence=IDA] [GO:0033962
"cytoplasmic mRNA processing body assembly" evidence=IDA]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
GO:GO:0010467 GO:GO:0003723 GO:GO:0000932 GO:GO:0016442
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0033962 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
KO:K12614 OMA:YSHARMK GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043928 HOVERGEN:HBG106685 OrthoDB:EOG4J1182
EMBL:Z11685 EMBL:BC065007 EMBL:D17532 IPI:IPI00030320 PIR:S22651
RefSeq:NP_001244120.1 RefSeq:NP_004388.2 UniGene:Hs.408461 PDB:1VEC
PDB:2WAX PDB:2WAY PDBsum:1VEC PDBsum:2WAX PDBsum:2WAY
ProteinModelPortal:P26196 SMR:P26196 DIP:DIP-29195N IntAct:P26196
STRING:P26196 PhosphoSite:P26196 DMDM:116241327
DOSAC-COBS-2DPAGE:P26196 PaxDb:P26196 PeptideAtlas:P26196
PRIDE:P26196 DNASU:1656 Ensembl:ENST00000264018
Ensembl:ENST00000526070 Ensembl:ENST00000534980 GeneID:1656
KEGG:hsa:1656 UCSC:uc001pub.2 CTD:1656 GeneCards:GC11M118654
HGNC:HGNC:2747 HPA:CAB004668 HPA:HPA024201 HPA:HPA026644 MIM:600326
neXtProt:NX_P26196 PharmGKB:PA27229 InParanoid:P26196
PhylomeDB:P26196 ChiTaRS:DDX6 EvolutionaryTrace:P26196
GenomeRNAi:1656 NextBio:6820 ArrayExpress:P26196 Bgee:P26196
CleanEx:HS_DDX6 Genevestigator:P26196 GermOnline:ENSG00000110367
Uniprot:P26196
Length = 483
Score = 91 (37.1 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 33/116 (28%), Positives = 55/116 (47%)
Query: 547 EILEETAPHLVDSICVY-RAGYVAEDRRRIERDFFGGKLC-GVAATNALELGIDVGHIDV 604
E+L + L S C Y A E R R+ DF G LC + T+ GID+ ++V
Sbjct: 348 ELLAKKISQLGYS-CFYIHAKMRQEHRNRVFHDFRNG-LCRNLVCTDLFTRGIDIQAVNV 405
Query: 605 TLHLGFPGSIASLWQQAGRSGRRERPSLAV-YVAFEGPLDQYFMKYPEKLFKSPIE 659
++ FP + + GRSGR LA+ + ++ D++ +K E+ + I+
Sbjct: 406 VINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYD---DRFNLKSIEEQLGTEIK 458
Score = 90 (36.7 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 25/101 (24%), Positives = 45/101 (44%)
Query: 260 QAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSS-SALYMFPTKXXXXXXXX 318
Q ESI +L+G++++ +GKS Y +P+LE L + A+ + PT+
Sbjct: 123 QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQ 182
Query: 319 XXXXMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNP 359
++K + + G + D M L D ++I P
Sbjct: 183 ICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATP 223
>UNIPROTKB|F1SAJ5 [details] [associations]
symbol:DDX6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:FP089499
RefSeq:XP_003129962.1 RefSeq:XP_003357372.1 UniGene:Ssc.97711
Ensembl:ENSSSCT00000016463 GeneID:100515499 KEGG:ssc:100515499
Uniprot:F1SAJ5
Length = 483
Score = 91 (37.1 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 33/116 (28%), Positives = 55/116 (47%)
Query: 547 EILEETAPHLVDSICVY-RAGYVAEDRRRIERDFFGGKLC-GVAATNALELGIDVGHIDV 604
E+L + L S C Y A E R R+ DF G LC + T+ GID+ ++V
Sbjct: 348 ELLAKKISQLGYS-CFYIHAKMRQEHRNRVFHDFRNG-LCRNLVCTDLFTRGIDIQAVNV 405
Query: 605 TLHLGFPGSIASLWQQAGRSGRRERPSLAV-YVAFEGPLDQYFMKYPEKLFKSPIE 659
++ FP + + GRSGR LA+ + ++ D++ +K E+ + I+
Sbjct: 406 VINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYD---DRFNLKSIEEQLGTEIK 458
Score = 90 (36.7 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 25/101 (24%), Positives = 45/101 (44%)
Query: 260 QAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSS-SALYMFPTKXXXXXXXX 318
Q ESI +L+G++++ +GKS Y +P+LE L + A+ + PT+
Sbjct: 123 QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQ 182
Query: 319 XXXXMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNP 359
++K + + G + D M L D ++I P
Sbjct: 183 ICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATP 223
>UNIPROTKB|Q4JNX8 [details] [associations]
symbol:RTS "RECQL4-helicase-like protein" species:8355
"Xenopus laevis" [GO:0000785 "chromatin" evidence=IDA] [GO:0003682
"chromatin binding" evidence=IDA] [GO:0006270 "DNA replication
initiation" evidence=IMP] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0000785
GO:GO:0003682 GO:GO:0003676 GO:GO:0006270 Gene3D:4.10.60.10
SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 HOVERGEN:HBG065925 KO:K10730 InterPro:IPR021110
Pfam:PF11719 EMBL:DQ059311 RefSeq:NP_001089101.1 UniGene:Xl.86701
ProteinModelPortal:Q4JNX8 GeneID:733317 KEGG:xla:733317 CTD:733317
Uniprot:Q4JNX8
Length = 1500
Score = 112 (44.5 bits), Expect = 5.1e-05, Sum P(3) = 5.1e-05
Identities = 24/64 (37%), Positives = 36/64 (56%)
Query: 563 YRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAG 622
Y AG A +RRR++ +F G+L V AT A +G+D + +H P + S Q+ G
Sbjct: 1020 YHAGMSAAERRRVQNNFMCGQLRLVVATVAFGMGLDKSDVRGIIHYNMPKNFESYVQEIG 1079
Query: 623 RSGR 626
R+GR
Sbjct: 1080 RAGR 1083
Score = 78 (32.5 bits), Expect = 5.1e-05, Sum P(3) = 5.1e-05
Identities = 20/56 (35%), Positives = 27/56 (48%)
Query: 235 EIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLP 290
E P + DN L G S Q +++M L+G + + T GKSLCY LP
Sbjct: 710 ETPSEVYDN----LSELGYRSFRSGQEQAVMRILSGFSSLGILSTGMGKSLCYQLP 761
Score = 49 (22.3 bits), Expect = 5.1e-05, Sum P(3) = 5.1e-05
Identities = 17/70 (24%), Positives = 35/70 (50%)
Query: 98 STEERDKVEDNLGSGQKAISLSKIFNAMKKRERSFKTNLWEAVNLLMCKLQKRVMSLSVE 157
S +E D ++N+ + Q ++ L+K ++RE S + + E + K +K S
Sbjct: 431 SLQEVDMSQENIAAEQVSVILAKGKRKKRQRETSAEPDTVEVSPKVSKKRRKTNRSPDNS 490
Query: 158 DLLTYVKERR 167
+ + V++RR
Sbjct: 491 ENSSSVRKRR 500
>CGD|CAL0006152 [details] [associations]
symbol:DHH1 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IEA] [GO:0030996 "cell cycle arrest
in response to nitrogen starvation" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IEA] [GO:0000753 "cell
morphogenesis involved in conjugation with cellular fusion"
evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0000290 "deadenylation-dependent
decapping of nuclear-transcribed mRNA" evidence=IEA] [GO:0031142
"induction of conjugation upon nitrogen starvation" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0006152 GO:GO:0005524 GO:GO:0006417
GO:GO:0006397 GO:GO:0003723 GO:GO:0000932 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0008026 EMBL:AACQ01000038 EMBL:AACQ01000037 eggNOG:COG0513
KO:K12614 InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_718704.1
RefSeq:XP_718788.1 ProteinModelPortal:Q5AAW3 SMR:Q5AAW3
GeneID:3639490 GeneID:3639628 KEGG:cal:CaO19.13577
KEGG:cal:CaO19.6197 Uniprot:Q5AAW3
Length = 549
Score = 97 (39.2 bits), Expect = 6.4e-05, Sum P(2) = 6.4e-05
Identities = 60/242 (24%), Positives = 104/242 (42%)
Query: 486 LRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSR-KLCELVL-- 542
++S ++K T + T IS+ Y F E Q L C+ S+ ++ + ++
Sbjct: 217 VKSFMDKHLTKPYEINLMDELTLKGISQF-YAFVEEKQK-LHCLNTLFSKLQINQSIIFC 274
Query: 543 -SYTR-EILEETAPHLVDSICVY-RAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDV 599
S R E+L + L S C Y A + R ++ +F GK+ + ++ L GID+
Sbjct: 275 NSTNRVELLAKKITELGYS-CYYSHAKMPQQARNKVFHEFRQGKVRNLVCSDLLTRGIDI 333
Query: 600 GHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIE 659
++V ++ FP + + + GRSGR LA+ + D+Y + E+ + I+
Sbjct: 334 QAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLMSWN--DRYSLYKIEQELGTEIK 391
Query: 660 CCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGY-LSSDPSLDS 718
I A K L A+ P + DE L G T+ N+GY P D
Sbjct: 392 --PIPATIDKSLYVAENADAVPRPFRI--DE------LPKGNETVHNKGYQYKGQPVKDE 441
Query: 719 SA 720
++
Sbjct: 442 NS 443
Score = 84 (34.6 bits), Expect = 6.4e-05, Sum P(2) = 6.4e-05
Identities = 25/109 (22%), Positives = 46/109 (42%)
Query: 252 GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSS-SALYMFPTK 310
G K Q ESI +LAG++++ +GK+ + +P L+ + L+ AL + PT+
Sbjct: 49 GFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPCLQLVKPKLNKVQALILVPTR 108
Query: 311 XXXXXXXXXXXXMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNP 359
+ K + G + + D + L D +L+ P
Sbjct: 109 ELALQTSQVVRTLGKHVGTQCMVTT-GGTSLRDDIVRLHDPVHILVGTP 156
>UNIPROTKB|Q5AAW3 [details] [associations]
symbol:DHH1 "ATP-dependent RNA helicase DHH1"
species:237561 "Candida albicans SC5314" [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0006152 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 GO:GO:0003723 GO:GO:0000932
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0008026 EMBL:AACQ01000038 EMBL:AACQ01000037
eggNOG:COG0513 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_718704.1 RefSeq:XP_718788.1 ProteinModelPortal:Q5AAW3
SMR:Q5AAW3 GeneID:3639490 GeneID:3639628 KEGG:cal:CaO19.13577
KEGG:cal:CaO19.6197 Uniprot:Q5AAW3
Length = 549
Score = 97 (39.2 bits), Expect = 6.4e-05, Sum P(2) = 6.4e-05
Identities = 60/242 (24%), Positives = 104/242 (42%)
Query: 486 LRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSR-KLCELVL-- 542
++S ++K T + T IS+ Y F E Q L C+ S+ ++ + ++
Sbjct: 217 VKSFMDKHLTKPYEINLMDELTLKGISQF-YAFVEEKQK-LHCLNTLFSKLQINQSIIFC 274
Query: 543 -SYTR-EILEETAPHLVDSICVY-RAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDV 599
S R E+L + L S C Y A + R ++ +F GK+ + ++ L GID+
Sbjct: 275 NSTNRVELLAKKITELGYS-CYYSHAKMPQQARNKVFHEFRQGKVRNLVCSDLLTRGIDI 333
Query: 600 GHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIE 659
++V ++ FP + + + GRSGR LA+ + D+Y + E+ + I+
Sbjct: 334 QAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLMSWN--DRYSLYKIEQELGTEIK 391
Query: 660 CCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGY-LSSDPSLDS 718
I A K L A+ P + DE L G T+ N+GY P D
Sbjct: 392 --PIPATIDKSLYVAENADAVPRPFRI--DE------LPKGNETVHNKGYQYKGQPVKDE 441
Query: 719 SA 720
++
Sbjct: 442 NS 443
Score = 84 (34.6 bits), Expect = 6.4e-05, Sum P(2) = 6.4e-05
Identities = 25/109 (22%), Positives = 46/109 (42%)
Query: 252 GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSS-SALYMFPTK 310
G K Q ESI +LAG++++ +GK+ + +P L+ + L+ AL + PT+
Sbjct: 49 GFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPCLQLVKPKLNKVQALILVPTR 108
Query: 311 XXXXXXXXXXXXMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNP 359
+ K + G + + D + L D +L+ P
Sbjct: 109 ELALQTSQVVRTLGKHVGTQCMVTT-GGTSLRDDIVRLHDPVHILVGTP 156
>UNIPROTKB|Q8ECL2 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 93 (37.8 bits), Expect = 7.0e-05, Sum P(2) = 7.0e-05
Identities = 31/111 (27%), Positives = 49/111 (44%)
Query: 260 QAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSS--SA-----LYMFPTKXX 312
QA +I A L+G++V+ T SGK+ + LP+L+ LS S+ SA L + PT+
Sbjct: 36 QAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQRLSEAKSADKSAGVVRCLVLVPTREL 95
Query: 313 XXXXXXXXXXMTKAFDASIDI-GVYDGDTTQKDRMWLRDNARLLITNPDML 362
F+ + I + G + LR A +L+ P L
Sbjct: 96 AQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQMQSLRAGADVLVATPGRL 146
Score = 85 (35.0 bits), Expect = 7.0e-05, Sum P(2) = 7.0e-05
Identities = 21/63 (33%), Positives = 31/63 (49%)
Query: 572 RRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPS 631
R R+ F G++ + AT+ GID+ + V ++ P S A + GRSGR
Sbjct: 292 RTRVLDGFKNGEISVLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAG 351
Query: 632 LAV 634
LAV
Sbjct: 352 LAV 354
>TIGR_CMR|SO_3125 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 93 (37.8 bits), Expect = 7.0e-05, Sum P(2) = 7.0e-05
Identities = 31/111 (27%), Positives = 49/111 (44%)
Query: 260 QAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSS--SA-----LYMFPTKXX 312
QA +I A L+G++V+ T SGK+ + LP+L+ LS S+ SA L + PT+
Sbjct: 36 QAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQRLSEAKSADKSAGVVRCLVLVPTREL 95
Query: 313 XXXXXXXXXXMTKAFDASIDI-GVYDGDTTQKDRMWLRDNARLLITNPDML 362
F+ + I + G + LR A +L+ P L
Sbjct: 96 AQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQMQSLRAGADVLVATPGRL 146
Score = 85 (35.0 bits), Expect = 7.0e-05, Sum P(2) = 7.0e-05
Identities = 21/63 (33%), Positives = 31/63 (49%)
Query: 572 RRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPS 631
R R+ F G++ + AT+ GID+ + V ++ P S A + GRSGR
Sbjct: 292 RTRVLDGFKNGEISVLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAG 351
Query: 632 LAV 634
LAV
Sbjct: 352 LAV 354
>GENEDB_PFALCIPARUM|PFC0915w [details] [associations]
symbol:PFC0915w "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006200 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844502 HOGENOM:HOG000268797 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
ProtClustDB:CLSZ2429504 RefSeq:XP_001351278.1
ProteinModelPortal:O97285 SMR:O97285 EnsemblProtists:PFC0915w:mRNA
GeneID:814522 KEGG:pfa:PFC0915w EuPathDB:PlasmoDB:PF3D7_0320800
Uniprot:O97285
Length = 433
Score = 91 (37.1 bits), Expect = 7.4e-05, Sum P(2) = 7.4e-05
Identities = 29/105 (27%), Positives = 47/105 (44%)
Query: 543 SYTR-EILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGH 601
S TR E+L + L S A R R+ DF G + +++ GID+
Sbjct: 306 SITRVELLAKKITELGYSSFYIHARMSQTHRNRVFHDFRNGACRCLVSSDLFTRGIDIQS 365
Query: 602 IDVTLHLGFPGSIASLWQQAGRSGRRERPSLAV-YVAFEGPLDQY 645
++V ++ FP + + + GRSGR LA+ + FE + Y
Sbjct: 366 VNVVINFDFPKNSETYLHRIGRSGRYGHLGLAINLITFEDRFNLY 410
Score = 87 (35.7 bits), Expect = 7.4e-05, Sum P(2) = 7.4e-05
Identities = 27/109 (24%), Positives = 45/109 (41%)
Query: 252 GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALS-HDLSSSALYMFPTK 310
G K Q ESI +LAGKN++ +GK+ + +P+LE + H L + PT+
Sbjct: 79 GYEKPSPIQEESIPVALAGKNILARAKNGTGKTAAFAIPLLEKCNTHKNFIQGLILVPTR 138
Query: 311 XXXXXXXXXXXXMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNP 359
+ K + G + ++D M L + +L P
Sbjct: 139 ELALQTSAMIKELGKHMKVQCMVTT-GGTSLREDIMRLYNVVHILCGTP 186
>UNIPROTKB|F1PNP1 [details] [associations]
symbol:RECQL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF09382 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 GeneTree:ENSGT00550000074520
TIGRFAMs:TIGR00614 KO:K10899 OMA:ESSQTCH CTD:5965 EMBL:AAEX03015200
RefSeq:XP_543768.1 Ensembl:ENSCAFT00000019449 GeneID:486641
KEGG:cfa:486641 Uniprot:F1PNP1
Length = 646
Score = 98 (39.6 bits), Expect = 7.5e-05, Sum P(2) = 7.5e-05
Identities = 31/119 (26%), Positives = 55/119 (46%)
Query: 563 YRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAG 622
Y A ED+ R+ R + ++ V AT A +GID + +H SI + +Q++G
Sbjct: 344 YHANMEPEDKTRVHRRWSANEIQVVVATVAFGMGIDKPDVRFIIHHSMSKSIENYYQESG 403
Query: 623 RSGRRE-RPSLAVYVAFEGPL----DQYFMKY--PEKLFKSPIECCHIDAQNHKVLEQH 674
R+GR + + +Y F G + M+ +KL++ C +I ++ QH
Sbjct: 404 RAGRDDMKADCILYYGF-GDIFRISSMVVMENVGQQKLYEMVSYCQNISKCRRVLIAQH 461
Score = 84 (34.6 bits), Expect = 7.5e-05, Sum P(2) = 7.5e-05
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 260 QAESIMASLAGKNVVVATMTSSGKSLCYNLPVL 292
Q E+I +++GK+V + T GKSLCY LP L
Sbjct: 96 QLETINVTMSGKDVFLVMPTGGGKSLCYQLPAL 128
>WB|WBGene00019334 [details] [associations]
symbol:K02F3.12 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
EMBL:FO080195 HSSP:P15043 KO:K10899 OMA:ESSQTCH
RefSeq:NP_001022656.1 RefSeq:NP_001022657.1
ProteinModelPortal:Q9TXJ8 SMR:Q9TXJ8 EnsemblMetazoa:K02F3.12a
GeneID:175246 KEGG:cel:CELE_K02F3.12 UCSC:K02F3.12a CTD:175246
WormBase:K02F3.12a HOGENOM:HOG000044388 InParanoid:Q9TXJ8
NextBio:887386 Uniprot:Q9TXJ8
Length = 631
Score = 106 (42.4 bits), Expect = 8.4e-05, Sum P(2) = 8.4e-05
Identities = 31/106 (29%), Positives = 50/106 (47%)
Query: 529 IAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVA 588
I +C SR CE V + + A H Y A DR + + GK+ +
Sbjct: 336 IIYCLSRNDCEKVAKALKSHGIK-AKH-------YHAYMEPVDRSGAHQGWISGKIQVIV 387
Query: 589 ATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAV 634
AT A +GID ++ +H P SI + +Q++GR+GR +P+ +
Sbjct: 388 ATVAFGMGIDKPNVRFVIHHSLPKSIENYYQESGRAGRDGQPATCI 433
Score = 75 (31.5 bits), Expect = 8.4e-05, Sum P(2) = 8.4e-05
Identities = 19/51 (37%), Positives = 26/51 (50%)
Query: 244 TKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEA 294
TK + + K Q +I A ++ ++ VV T GKSLCY LP L A
Sbjct: 98 TKILKEQFHLEKFRPLQRAAINAVMSKEDAVVILSTGGGKSLCYQLPALLA 148
>FB|FBgn0004419 [details] [associations]
symbol:me31B "maternal expression at 31B" species:7227
"Drosophila melanogaster" [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS;NAS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IDA] [GO:0033962 "cytoplasmic mRNA
processing body assembly" evidence=IMP] [GO:0005875 "microtubule
associated complex" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0007095 "mitotic G2 DNA damage checkpoint"
evidence=IGI] [GO:0043186 "P granule" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005875 GO:GO:0007095 EMBL:AE014134 GO:GO:0003723
GO:GO:0000932 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033962 GO:GO:0004004 eggNOG:COG0513
GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 EMBL:M59926 EMBL:AY051663
PIR:A39157 RefSeq:NP_523533.2 RefSeq:NP_723539.1 UniGene:Dm.2770
ProteinModelPortal:P23128 SMR:P23128 IntAct:P23128 MINT:MINT-769276
STRING:P23128 PaxDb:P23128 PRIDE:P23128 EnsemblMetazoa:FBtr0079975
GeneID:34364 KEGG:dme:Dmel_CG4916 CTD:34364 FlyBase:FBgn0004419
InParanoid:P23128 OrthoDB:EOG45QFVG PhylomeDB:P23128 ChiTaRS:me31B
GenomeRNAi:34364 NextBio:788139 Bgee:P23128 GermOnline:CG4916
Uniprot:P23128
Length = 459
Score = 90 (36.7 bits), Expect = 8.8e-05, Sum P(2) = 8.8e-05
Identities = 33/118 (27%), Positives = 54/118 (45%)
Query: 529 IAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAE-DRRRIERDFFGGKLC-G 586
I FC S + EL+ ++I E + C Y +A+ R R+ DF G LC
Sbjct: 299 IIFCNSTQRVELL---AKKITE------LGYCCYYIHAKMAQAHRNRVFHDFRQG-LCRN 348
Query: 587 VAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAV-YVAFEGPLD 643
+ ++ GIDV ++V ++ FP + + GRSGR +A+ + +E D
Sbjct: 349 LVCSDLFTRGIDVQAVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFD 406
Score = 88 (36.0 bits), Expect = 8.8e-05, Sum P(2) = 8.8e-05
Identities = 29/102 (28%), Positives = 45/102 (44%)
Query: 260 QAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSS-SALYMFPTKXXXXXXXX 318
Q +I +L+GK+V+ +GK+ Y +PVLE + AL M PT+
Sbjct: 85 QEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLEQIDPTKDYIQALVMVPTRELALQTSQ 144
Query: 319 XXXXMTKAFDASIDIGVYDGDTTQKDRMW-LRDNARLLITNP 359
+ K D I + V G T KD + + +L+I P
Sbjct: 145 ICIELAKHLD--IRVMVTTGGTILKDDILRIYQKVQLIIATP 184
>UNIPROTKB|H9KZS5 [details] [associations]
symbol:H9KZS5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0043473 "pigmentation"
evidence=IEA] [GO:0045875 "negative regulation of sister chromatid
cohesion" evidence=IEA] [GO:0048705 "skeletal system morphogenesis"
evidence=IEA] InterPro:IPR001650 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0004386
InterPro:IPR014001 PROSITE:PS51192 GeneTree:ENSGT00550000074520
EMBL:AADN02044351 EMBL:AADN02044352 EMBL:AADN02044353
Ensembl:ENSGALT00000018179 OMA:CATREST Uniprot:H9KZS5
Length = 252
Score = 124 (48.7 bits), Expect = 0.00010, P = 0.00010
Identities = 28/75 (37%), Positives = 39/75 (52%)
Query: 558 DSICV-YRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIAS 616
D I Y AG A +RRR++ F G+L V AT A +G+D + LH P + S
Sbjct: 169 DQIAAAYHAGLTAAERRRVQSAFMRGRLRVVVATVAFGMGLDKADVRAVLHYNMPRNFES 228
Query: 617 LWQQAGRSGRRERPS 631
Q+ GR+GR P+
Sbjct: 229 YVQEIGRAGRDGEPA 243
>RGD|1311071 [details] [associations]
symbol:Recql "RecQ protein-like (DNA helicase Q1-like)"
species:10116 "Rattus norvegicus" [GO:0000733 "DNA strand
renaturation" evidence=IEA;ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0015630 "microtubule cytoskeleton"
evidence=IEA;ISO] [GO:0032508 "DNA duplex unwinding" evidence=ISO]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF09382
PROSITE:PS51194 SMART:SM00490 RGD:1311071 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
KO:K10899 HOGENOM:HOG000044388 CTD:5965 HOVERGEN:HBG057654
EMBL:BC079026 IPI:IPI00366306 RefSeq:NP_001012098.1
UniGene:Rn.203166 ProteinModelPortal:Q6AYJ1 SMR:Q6AYJ1
STRING:Q6AYJ1 PRIDE:Q6AYJ1 Ensembl:ENSRNOT00000065576 GeneID:312824
KEGG:rno:312824 UCSC:RGD:1311071 NextBio:665291 ArrayExpress:Q6AYJ1
Genevestigator:Q6AYJ1 GermOnline:ENSRNOG00000012602 Uniprot:Q6AYJ1
Length = 621
Score = 98 (39.6 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 31/119 (26%), Positives = 54/119 (45%)
Query: 563 YRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAG 622
Y A EDR ++ + +L V AT A +GID + +H S+ + +Q++G
Sbjct: 344 YHANMEPEDRTKVHTQWSANELQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESG 403
Query: 623 RSGRRE-RPSLAVYVAFEGPL----DQYFMKY--PEKLFKSPIECCHIDAQNHKVLEQH 674
R+GR + R +Y F G + M+ +KL++ C +I ++ QH
Sbjct: 404 RAGRDDWRADCILYYGF-GDIFRISSMVVMENVGQQKLYEMVSYCQNISKCRRALIAQH 461
Score = 82 (33.9 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 253 ISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVL 292
+ K Q E++ A++A K++ + T GKSLCY LP L
Sbjct: 89 LQKFRPLQLETVNATMARKDIFLVMPTGGGKSLCYQLPAL 128
>UNIPROTKB|Q6AYJ1 [details] [associations]
symbol:Recql "ATP-dependent DNA helicase Q1" species:10116
"Rattus norvegicus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF09382 PROSITE:PS51194 SMART:SM00490 RGD:1311071
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
KO:K10899 HOGENOM:HOG000044388 CTD:5965 HOVERGEN:HBG057654
EMBL:BC079026 IPI:IPI00366306 RefSeq:NP_001012098.1
UniGene:Rn.203166 ProteinModelPortal:Q6AYJ1 SMR:Q6AYJ1
STRING:Q6AYJ1 PRIDE:Q6AYJ1 Ensembl:ENSRNOT00000065576 GeneID:312824
KEGG:rno:312824 UCSC:RGD:1311071 NextBio:665291 ArrayExpress:Q6AYJ1
Genevestigator:Q6AYJ1 GermOnline:ENSRNOG00000012602 Uniprot:Q6AYJ1
Length = 621
Score = 98 (39.6 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 31/119 (26%), Positives = 54/119 (45%)
Query: 563 YRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAG 622
Y A EDR ++ + +L V AT A +GID + +H S+ + +Q++G
Sbjct: 344 YHANMEPEDRTKVHTQWSANELQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESG 403
Query: 623 RSGRRE-RPSLAVYVAFEGPL----DQYFMKY--PEKLFKSPIECCHIDAQNHKVLEQH 674
R+GR + R +Y F G + M+ +KL++ C +I ++ QH
Sbjct: 404 RAGRDDWRADCILYYGF-GDIFRISSMVVMENVGQQKLYEMVSYCQNISKCRRALIAQH 461
Score = 82 (33.9 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 253 ISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVL 292
+ K Q E++ A++A K++ + T GKSLCY LP L
Sbjct: 89 LQKFRPLQLETVNATMARKDIFLVMPTGGGKSLCYQLPAL 128
>UNIPROTKB|P30015 [details] [associations]
symbol:lhr "member of ATP-dependent helicase superfamily
II" species:83333 "Escherichia coli K-12" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016818
"hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 InterPro:IPR013701
Pfam:PF00270 Pfam:PF00271 Pfam:PF08494 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:L01622 PIR:G64922 RefSeq:NP_416170.1 RefSeq:YP_489917.1
ProteinModelPortal:P30015 SMR:P30015 DIP:DIP-10097N IntAct:P30015
MINT:MINT-1293547 PaxDb:P30015 PRIDE:P30015
EnsemblBacteria:EBESCT00000003531 EnsemblBacteria:EBESCT00000018334
GeneID:12931274 GeneID:946156 KEGG:ecj:Y75_p1630 KEGG:eco:b1653
PATRIC:32118608 EchoBASE:EB1510 EcoGene:EG11548 eggNOG:COG1201
HOGENOM:HOG000238716 KO:K03724 OMA:PRLVWDR ProtClustDB:PRK09751
BioCyc:EcoCyc:EG11548-MONOMER BioCyc:ECOL316407:JW1645-MONOMER
Genevestigator:P30015 Uniprot:P30015
Length = 1538
Score = 135 (52.6 bits), Expect = 0.00011, P = 0.00011
Identities = 75/315 (23%), Positives = 145/315 (46%)
Query: 328 DASIDIGVYDGDTTQKDRMWL-RDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFS 386
+ ++ +G+ GDT ++R L R+ +LIT P+ L++ + SR LR + +
Sbjct: 123 EVNLRVGIRTGDTPAQERSKLTRNPPDILITTPESLYLMLT------SRARETLRGVE-T 175
Query: 387 LVTTEVYLI-------FLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSF 439
++ EV+ + L + +D A + A + +R + + + G P
Sbjct: 176 VIIDEVHAVAGSKRGAHLALSLERLD-ALLHTSAQRIGLSATVRSASDVAAFLGGDRPVT 234
Query: 440 VFSTATSANPREHCM-ELANLSTLELIQND-GSPC-AQKLFVLWN--PTSCLRSVL-NKS 493
V + +P+ + +AN+ + + + G A + +W T L VL ++S
Sbjct: 235 VVNPPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDEVLRHRS 294
Query: 494 QTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETA 553
++R A K ++ ++E L+A +Q IA + E T ++ +
Sbjct: 295 TIVFTNSRGLAEKLTARLNE---LYAARLQRS-PSIAVDAAH--FESTSGATSNRVQSSD 348
Query: 554 PHLVDSICVYRAGYVAEDRRRI-ERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPG 612
+ S G V++++R I E+ G+L V AT++LELGID+G +D+ + + P
Sbjct: 349 VFIARS----HHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPL 404
Query: 613 SIASLWQQAGRSGRR 627
S+AS Q+ GR+G +
Sbjct: 405 SVASGLQRIGRAGHQ 419
>SGD|S000002319 [details] [associations]
symbol:DHH1 "Cytoplasmic DExD/H-box helicase, stimulates mRNA
decapping" species:4932 "Saccharomyces cerevisiae" [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=IMP] [GO:0003724 "RNA helicase activity" evidence=IGI;ISS]
[GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002319 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 EMBL:BK006938 GO:GO:0003723
GO:GO:0000753 GO:GO:0000932 EMBL:Z67750 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0033962 GO:GO:0034063 GO:GO:0008026 eggNOG:COG0513
GeneTree:ENSGT00530000063986 HOGENOM:HOG000268797 KO:K12614
OMA:YSHARMK GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0000290 OrthoDB:EOG4QJVWF EMBL:X66057 EMBL:Z74208 PIR:S31229
RefSeq:NP_010121.1 PDB:1S2M PDBsum:1S2M ProteinModelPortal:P39517
SMR:P39517 DIP:DIP-1243N IntAct:P39517 MINT:MINT-385061
STRING:P39517 PaxDb:P39517 PeptideAtlas:P39517 EnsemblFungi:YDL160C
GeneID:851394 KEGG:sce:YDL160C CYGD:YDL160c
EvolutionaryTrace:P39517 NextBio:968552 Genevestigator:P39517
GermOnline:YDL160C Uniprot:P39517
Length = 506
Score = 92 (37.4 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 34/125 (27%), Positives = 61/125 (48%)
Query: 516 YLFAEMVQHGLRCIAFCRSR-KLCELVL---SYTR-EILEETAPHLVDSICVY-RAGYVA 569
Y F E Q L C+ S+ ++ + ++ S R E+L + L S C Y A
Sbjct: 262 YAFVEERQK-LHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYS-CYYSHARMKQ 319
Query: 570 EDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRER 629
++R ++ +F GK+ + ++ L GID+ ++V ++ FP + + + GRSGR
Sbjct: 320 QERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGH 379
Query: 630 PSLAV 634
LA+
Sbjct: 380 LGLAI 384
Score = 86 (35.3 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 26/110 (23%), Positives = 46/110 (41%)
Query: 252 GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSS-SALYMFPTK 310
G K Q E+I ++ G++++ +GK+ + +P LE + L+ AL M PT+
Sbjct: 65 GFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTR 124
Query: 311 XXXXXXXXXXXXMTKAFDASIDIGVYDGDTTQKDRMW-LRDNARLLITNP 359
+ K I V G T +D + L + +L+ P
Sbjct: 125 ELALQTSQVVRTLGK--HCGISCMVTTGGTNLRDDILRLNETVHILVGTP 172
>TIGR_CMR|BA_2109 [details] [associations]
symbol:BA_2109 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:MMAINTI HSSP:P10081 HOGENOM:HOG000268811
RefSeq:NP_844507.1 RefSeq:YP_018751.1 RefSeq:YP_028224.1
ProteinModelPortal:Q81RE0 DNASU:1085806
EnsemblBacteria:EBBACT00000011412 EnsemblBacteria:EBBACT00000014072
EnsemblBacteria:EBBACT00000023039 GeneID:1085806 GeneID:2818618
GeneID:2851363 KEGG:ban:BA_2109 KEGG:bar:GBAA_2109 KEGG:bat:BAS1961
ProtClustDB:CLSK886848 BioCyc:BANT260799:GJAJ-2029-MONOMER
BioCyc:BANT261594:GJ7F-2106-MONOMER Uniprot:Q81RE0
Length = 389
Score = 88 (36.0 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 27/131 (20%), Positives = 59/131 (45%)
Query: 245 KSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSS-SA 303
+ A + G +L Q ++I L G++V+ + T +GK+L Y LP+L ++ ++
Sbjct: 10 QQAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKINPEVKQPQV 69
Query: 304 LYMFPTKXXXXXXXXXXXXMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNP---- 359
+ + PT+ T + S + G ++ L+ + R+++ +P
Sbjct: 70 VVLAPTRELVMQIHEEVQKFTAGTEIS-GASLIGGADIKRQVEKLKKHPRVIVGSPGRIL 128
Query: 360 DMLHMSILPYH 370
+++ M L H
Sbjct: 129 ELIRMKKLKMH 139
Score = 86 (35.3 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 20/65 (30%), Positives = 33/65 (50%)
Query: 570 EDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRER 629
++R R F GGKL + AT+ GID+ + +HL P ++ ++GR+GR +
Sbjct: 271 QEREATMRAFRGGKLEILLATDIAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGK 330
Query: 630 PSLAV 634
V
Sbjct: 331 EGTVV 335
>UNIPROTKB|A0JN36 [details] [associations]
symbol:RECQL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0015630 "microtubule cytoskeleton" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0000733 "DNA strand renaturation"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0015630
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
eggNOG:COG0514 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0000733 GO:GO:0008026 KO:K10899 OMA:ESSQTCH
HOGENOM:HOG000044388 CTD:5965 HOVERGEN:HBG057654 OrthoDB:EOG4THVSK
EMBL:DAAA02014122 EMBL:DAAA02014123 EMBL:BC126495 IPI:IPI00692480
RefSeq:NP_001071459.1 UniGene:Bt.13736 SMR:A0JN36 STRING:A0JN36
Ensembl:ENSBTAT00000028079 GeneID:533006 KEGG:bta:533006
InParanoid:A0JN36 NextBio:20875874 Uniprot:A0JN36
Length = 649
Score = 94 (38.1 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 29/119 (24%), Positives = 56/119 (47%)
Query: 563 YRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAG 622
Y A ED+ ++ R + ++ V AT A +GID + +H S+ + +Q++G
Sbjct: 344 YHANMEPEDKTKVHRRWAANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESG 403
Query: 623 RSGRRE-RPSLAVYVAFEGPL----DQYFMKY--PEKLFKSPIECCHIDAQNHKVLEQH 674
R+GR + + +Y F G + M+ +KL++ C +I+ ++ QH
Sbjct: 404 RAGRDDMKADCILYYGF-GDIFRISSMVVMENVGQQKLYEMVSYCQNINKCRRVLIAQH 461
Score = 84 (34.6 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 253 ISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVL 292
+ K Q E+I +++GK V + T GKSLCY LP L
Sbjct: 89 LQKFRPLQLETINVTMSGKEVFLVMPTGGGKSLCYQLPAL 128
>SGD|S000004802 [details] [associations]
symbol:SGS1 "Nucleolar DNA helicase of the RecQ family"
species:4932 "Saccharomyces cerevisiae" [GO:0004386 "helicase
activity" evidence=IEA] [GO:0000722 "telomere maintenance via
recombination" evidence=IGI;IMP] [GO:0031860 "telomeric 3' overhang
formation" evidence=IGI] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000706 "meiotic
DNA double-strand break processing" evidence=IGI] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA;IDA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0010520
"regulation of reciprocal meiotic recombination" evidence=IGI]
[GO:0031573 "intra-S DNA damage checkpoint" evidence=IGI;IMP]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IGI;IMP] [GO:0031292 "gene conversion at
mating-type locus, DNA double-strand break processing"
evidence=IGI] [GO:0000729 "DNA double-strand break processing"
evidence=IGI] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
[GO:0031422 "RecQ helicase-Topo III complex" evidence=IDA;IPI]
[GO:0001302 "replicative cell aging" evidence=IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0010947 "negative regulation of meiotic joint
molecule formation" evidence=IGI] [GO:0045132 "meiotic chromosome
segregation" evidence=IMP] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IDA] [GO:0006268 "DNA unwinding involved in
replication" evidence=IDA] [GO:0051276 "chromosome organization"
evidence=IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00490 SMART:SM00956 SGD:S000004802
GO:GO:0005524 GO:GO:0005730 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0001302 GO:GO:0003676 EMBL:BK006946 GO:GO:0000070
GO:GO:0004003 GO:GO:0000724 GO:GO:0045132 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000706
GO:GO:0000722 eggNOG:COG0514 GeneTree:ENSGT00550000074520 KO:K10901
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0031573
EMBL:Z47815 GO:GO:0031292 GO:GO:0031860 GO:GO:0006268
OrthoDB:EOG4XSPZ5 GO:GO:0031422 EMBL:U22341 EMBL:L07870 PIR:S50918
RefSeq:NP_013915.1 PDB:1D8B PDBsum:1D8B ProteinModelPortal:P35187
SMR:P35187 DIP:DIP-2911N IntAct:P35187 MINT:MINT-442647
STRING:P35187 PeptideAtlas:P35187 EnsemblFungi:YMR190C
GeneID:855228 KEGG:sce:YMR190C CYGD:YMR190c HOGENOM:HOG000141897
OMA:TIFEICD EvolutionaryTrace:P35187 NextBio:978762
Genevestigator:P35187 GermOnline:YMR190C GO:GO:0010947
InterPro:IPR022758 Pfam:PF11408 Uniprot:P35187
Length = 1447
Score = 93 (37.8 bits), Expect = 0.00020, Sum P(3) = 0.00020
Identities = 27/111 (24%), Positives = 49/111 (44%)
Query: 529 IAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVA 588
I +C S+K CE T ++ Y AG ++R +++ + ++ +
Sbjct: 904 IIYCHSKKSCE----QTSAQMQRNGI----KCAYYHAGMEPDERLSVQKAWQADEIQVIC 955
Query: 589 ATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAV-YVAF 638
AT A +GID + H P ++ +Q+ GR+GR S + Y +F
Sbjct: 956 ATVAFGMGIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSYCITYFSF 1006
Score = 87 (35.7 bits), Expect = 0.00020, Sum P(3) = 0.00020
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 259 HQAESIMASLAGKNVVVATMTSSGKSLCYNLPVL 292
+Q E++ A+L GK+V V T GKSLCY LP +
Sbjct: 682 NQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAV 715
Score = 53 (23.7 bits), Expect = 0.00020, Sum P(3) = 0.00020
Identities = 23/91 (25%), Positives = 44/91 (48%)
Query: 63 EDIENLAVLCPKV-VQFANDDMESKNHDDSIVIINVSTEERDKVEDNLGSGQKAISLSKI 121
+D+E A+L + F M +H D + +I+ E D EDN +G + +S S +
Sbjct: 517 DDLEKDAILDDSMSFSFGRQHMPM-SHSD-LELIDSEKENEDFEEDNNNNGIEYLSDSDL 574
Query: 122 FNAMKKRE-RSFKTNLWEAVNLLMCKLQKRV 151
++RE R+ ++ E N L ++++
Sbjct: 575 ERFDEERENRTQVADIQELDNDLKIITERKL 605
>UNIPROTKB|P46063 [details] [associations]
symbol:RECQL "ATP-dependent DNA helicase Q1" species:9606
"Homo sapiens" [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA
helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000733 "DNA strand
renaturation" evidence=IDA] [GO:0003678 "DNA helicase activity"
evidence=IDA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA;TAS]
InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF09382
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0015630 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310 GO:GO:0004003
EMBL:CH471094 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 eggNOG:COG0514 TIGRFAMs:TIGR00614 GO:GO:0000733
EMBL:AC006559 KO:K10899 OMA:ESSQTCH HOGENOM:HOG000044388
EMBL:L36140 EMBL:D37984 EMBL:BT007119 EMBL:AK291627 EMBL:BC001052
IPI:IPI00178431 PIR:A58836 RefSeq:NP_002898.2 RefSeq:NP_116559.1
UniGene:Hs.235069 PDB:2V1X PDB:2WWY PDBsum:2V1X PDBsum:2WWY
ProteinModelPortal:P46063 SMR:P46063 DIP:DIP-29216N IntAct:P46063
STRING:P46063 PhosphoSite:P46063 DMDM:218512113 PaxDb:P46063
PRIDE:P46063 DNASU:5965 Ensembl:ENST00000421138
Ensembl:ENST00000444129 GeneID:5965 KEGG:hsa:5965 UCSC:uc001rex.3
CTD:5965 GeneCards:GC12M021621 H-InvDB:HIX0010478 HGNC:HGNC:9948
HPA:CAB009743 HPA:HPA030960 MIM:600537 neXtProt:NX_P46063
PharmGKB:PA34315 HOVERGEN:HBG057654 InParanoid:P46063
PhylomeDB:P46063 ChEMBL:CHEMBL1293236 ChiTaRS:RECQL
EvolutionaryTrace:P46063 GenomeRNAi:5965 NextBio:23220
ArrayExpress:P46063 Bgee:P46063 CleanEx:HS_RECQL
Genevestigator:P46063 GermOnline:ENSG00000004700 Uniprot:P46063
Length = 649
Score = 91 (37.1 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 29/119 (24%), Positives = 54/119 (45%)
Query: 563 YRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAG 622
Y A ED+ + R + ++ V AT A +GID + +H S+ + +Q++G
Sbjct: 344 YHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESG 403
Query: 623 RSGRRE-RPSLAVYVAFEGPL----DQYFMKY--PEKLFKSPIECCHIDAQNHKVLEQH 674
R+GR + + +Y F G + M+ +KL++ C +I ++ QH
Sbjct: 404 RAGRDDMKADCILYYGF-GDIFRISSMVVMENVGQQKLYEMVSYCQNISKCRRVLMAQH 461
Score = 87 (35.7 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 18/40 (45%), Positives = 23/40 (57%)
Query: 253 ISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVL 292
+ K Q E+I ++AGK V + T GKSLCY LP L
Sbjct: 89 LEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPAL 128
>RGD|1308810 [details] [associations]
symbol:Blm "Bloom syndrome, RecQ helicase-like" species:10116
"Rattus norvegicus" [GO:0000079 "regulation of cyclin-dependent
protein serine/threonine kinase activity" evidence=ISO] [GO:0000405
"bubble DNA binding" evidence=ISO] [GO:0000723 "telomere
maintenance" evidence=ISO] [GO:0000729 "DNA double-strand break
processing" evidence=ISO] [GO:0000733 "DNA strand renaturation"
evidence=ISO] [GO:0000800 "lateral element" evidence=ISO]
[GO:0001673 "male germ cell nucleus" evidence=ISO] [GO:0002039 "p53
binding" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISO] [GO:0004386
"helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=IEA;ISO] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005657 "replication
fork" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006200 "ATP catabolic
process" evidence=ISO] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=ISO] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0009378 "four-way junction helicase activity"
evidence=ISO] [GO:0010165 "response to X-ray" evidence=ISO]
[GO:0016363 "nuclear matrix" evidence=ISO] [GO:0016605 "PML body"
evidence=ISO] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0031297 "replication fork processing" evidence=ISO] [GO:0036310
"annealing helicase activity" evidence=ISO] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
[GO:0045120 "pronucleus" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045910 "negative regulation of DNA recombination"
evidence=ISO] [GO:0045950 "negative regulation of mitotic
recombination" evidence=ISO] [GO:0046632 "alpha-beta T cell
differentiation" evidence=ISO] [GO:0046641 "positive regulation of
alpha-beta T cell proliferation" evidence=ISO] [GO:0051098
"regulation of binding" evidence=ISO] [GO:0051259 "protein
oligomerization" evidence=ISO] [GO:0051276 "chromosome
organization" evidence=ISO] [GO:0051782 "negative regulation of
cell division" evidence=ISO] [GO:0051880 "G-quadruplex DNA binding"
evidence=ISO] [GO:0000781 "chromosome, telomeric region"
evidence=ISO] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 InterPro:IPR012532
Pfam:PF00270 Pfam:PF00271 Pfam:PF08072 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 RGD:1308810 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614
GO:GO:0008026 IPI:IPI00561580 Ensembl:ENSRNOT00000030936
UCSC:RGD:1308810 ArrayExpress:D3ZSJ5 Uniprot:D3ZSJ5
Length = 999
Score = 96 (38.9 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 30/100 (30%), Positives = 45/100 (45%)
Query: 529 IAFCRSRKLCELVL-SYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGV 587
I +C SRK C+ + + RE L A Y AG R ++ + C V
Sbjct: 883 IIYCLSRKECDTMADTLQREGLAALA---------YHAGLSDSARDEVQHKWINQDNCQV 933
Query: 588 -AATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGR 626
AT A +GID + +H P S+ +Q++GR+GR
Sbjct: 934 ICATIAFGMGIDKPDVRFVVHASLPKSVEGYYQESGRAGR 973
Score = 86 (35.3 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 249 KSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLP 290
K G+ ++Q E+I A+L G++ + T GKSLCY LP
Sbjct: 652 KKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLP 693
>UNIPROTKB|F1ND40 [details] [associations]
symbol:BLM "Bloom syndrome protein homolog" species:9031
"Gallus gallus" [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0000079 "regulation of cyclin-dependent protein
serine/threonine kinase activity" evidence=IEA] [GO:0000405 "bubble
DNA binding" evidence=IEA] [GO:0000723 "telomere maintenance"
evidence=IEA] [GO:0000729 "DNA double-strand break processing"
evidence=IEA] [GO:0000781 "chromosome, telomeric region"
evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
[GO:0001673 "male germ cell nucleus" evidence=IEA] [GO:0002039 "p53
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005657
"replication fork" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0009378
"four-way junction helicase activity" evidence=IEA] [GO:0010165
"response to X-ray" evidence=IEA] [GO:0016363 "nuclear matrix"
evidence=IEA] [GO:0016605 "PML body" evidence=IEA] [GO:0031297
"replication fork processing" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0045120 "pronucleus" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0045950 "negative regulation of mitotic recombination"
evidence=IEA] [GO:0046632 "alpha-beta T cell differentiation"
evidence=IEA] [GO:0046641 "positive regulation of alpha-beta T cell
proliferation" evidence=IEA] [GO:0051098 "regulation of binding"
evidence=IEA] [GO:0051259 "protein oligomerization" evidence=IEA]
[GO:0051782 "negative regulation of cell division" evidence=IEA]
[GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012532 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0051259 GO:GO:0005524 GO:GO:0005737
GO:GO:0045893 GO:GO:0000079 GO:GO:0005730 GO:GO:0016605
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
GO:GO:0001673 GO:GO:0003697 GO:GO:0016363 GO:GO:0010165
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GO:GO:0000781 GO:GO:0000723 GO:GO:0005657
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000733 GO:GO:0000800 GO:GO:0045120
GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0051782
GO:GO:0045950 GO:GO:0046641 GO:GO:0051098 GO:GO:0031297
EMBL:AADN02038832 IPI:IPI00823016 Ensembl:ENSGALT00000038179
ArrayExpress:F1ND40 Uniprot:F1ND40
Length = 1142
Score = 100 (40.3 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 29/99 (29%), Positives = 47/99 (47%)
Query: 529 IAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGV- 587
I +C SR C+ T IL++ + Y AG +R +++ + + C V
Sbjct: 622 IIYCLSRHECDT----TAAILQKEGL----AALAYHAGLTDSNRDLVQKKWVNQEGCQVI 673
Query: 588 AATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGR 626
AT A +GID + +H P SI +Q++GR+GR
Sbjct: 674 CATIAFGMGIDKPDVRYVIHASLPKSIEGYYQESGRAGR 712
Score = 83 (34.3 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 252 GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLP 290
G+ ++Q E+I A+L G++ + T GKSLCY LP
Sbjct: 394 GLHSFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLP 432
>ZFIN|ZDB-GENE-070702-5 [details] [associations]
symbol:blm "Bloom syndrome" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0045950 "negative
regulation of mitotic recombination" evidence=IMP] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012532
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
ZFIN:ZDB-GENE-070702-5 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0045950 EMBL:CABZ01019975
EMBL:CABZ01036951 EMBL:CABZ01036952 EMBL:CABZ01036953
EMBL:CABZ01036954 EMBL:CABZ01036955 EMBL:CABZ01036956
EMBL:CABZ01036957 EMBL:CABZ01036958 EMBL:CABZ01036959
EMBL:CABZ01036960 EMBL:CABZ01036961 EMBL:CABZ01036962
EMBL:CABZ01036963 EMBL:CABZ01036964 EMBL:CABZ01039756 EMBL:CR450750
IPI:IPI00934934 Ensembl:ENSDART00000110746 Uniprot:E7EZY7
Length = 1420
Score = 96 (38.9 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 27/99 (27%), Positives = 46/99 (46%)
Query: 529 IAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGV- 587
I +C SR C+ + + L+ + ++ Y AG DR ++ + C V
Sbjct: 884 IVYCLSRNDCDTLA----DSLQRAG---IAALA-YHAGLSDSDREYVQNKWINQDGCQVM 935
Query: 588 AATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGR 626
AT A +GID + +H P S+ +Q++GR+GR
Sbjct: 936 CATIAFGMGIDKPDVRYVIHASLPKSVEGYYQESGRAGR 974
Score = 89 (36.4 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 249 KSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLP 290
K G+ + +Q E+I ASL G++ V T GKSLCY LP
Sbjct: 653 KKFGLHQFRFNQLEAINASLLGEDTFVLMPTGGGKSLCYQLP 694
>TAIR|locus:2010306 [details] [associations]
symbol:EMB1586 "embryo defective 1586" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0009663 "plasmodesma organization"
evidence=IMP] [GO:0003724 "RNA helicase activity" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0010497
"plasmodesmata-mediated intercellular transport" evidence=IMP]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524 GO:GO:0003723
EMBL:AC012187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0010497 EMBL:AC025417 EMBL:AY062618 EMBL:AY114691
EMBL:AK175587 EMBL:AK175711 EMBL:AK175751 EMBL:AK175793
EMBL:AK176044 EMBL:AK176194 EMBL:AK226229 EMBL:AK229878
EMBL:AK230085 IPI:IPI00521991 PIR:H86260 RefSeq:NP_172737.2
UniGene:At.47876 ProteinModelPortal:Q8W4E1 SMR:Q8W4E1 PaxDb:Q8W4E1
PRIDE:Q8W4E1 EnsemblPlants:AT1G12770.1 GeneID:837833
KEGG:ath:AT1G12770 GeneFarm:1026 TAIR:At1g12770
HOGENOM:HOG000239285 InParanoid:Q8W4E1 OMA:IRVSNFV PhylomeDB:Q8W4E1
ProtClustDB:CLSN2681499 Genevestigator:Q8W4E1 GO:GO:0009663
Uniprot:Q8W4E1
Length = 551
Score = 91 (37.1 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 23/69 (33%), Positives = 39/69 (56%)
Query: 227 SARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLC 286
SA+ + +PD+LLD+ L+ G S Q+ ++ A + G + V+ + T SGK+L
Sbjct: 108 SAKSFEELGLPDSLLDS----LEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLA 163
Query: 287 YNLPVLEAL 295
Y LP+L +
Sbjct: 164 YLLPILSEI 172
Score = 85 (35.0 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 28/97 (28%), Positives = 43/97 (44%)
Query: 572 RRRIERDFFGGKLCGVAATNALEL-GIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERP 630
R + + F G++ V TN L G+DV D+ ++L P +AGR+GR R
Sbjct: 446 RSTVLKKFKNGEI-KVLVTNELSARGLDVAECDLVVNLELPTDAVHYAHRAGRTGRLGRK 504
Query: 631 SLAVYVAFEGPLDQYFMKYPEKLFKSPIECCH-IDAQ 666
V V E + + +K EK P C +D +
Sbjct: 505 GTVVTVCEESQV--FIVKKMEKQLGLPFLYCEFVDGE 539
>TIGR_CMR|CBU_0472 [details] [associations]
symbol:CBU_0472 "ATP-dependent DNA helicase RecQ"
species:227377 "Coxiella burnetii RSA 493" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043
HOGENOM:HOG000044388 KO:K03654 TIGRFAMs:TIGR01389 OMA:YCLSRAK
RefSeq:NP_819507.1 ProteinModelPortal:Q83E59 SMR:Q83E59
GeneID:1208356 KEGG:cbu:CBU_0472 PATRIC:17929635
ProtClustDB:CLSK914091 BioCyc:CBUR227377:GJ7S-469-MONOMER
Uniprot:Q83E59
Length = 601
Score = 108 (43.1 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 36/125 (28%), Positives = 56/125 (44%)
Query: 514 VSYLFAEMVQHGLRCIAFCRSRKL-CELVLSYTREILEETAPHL-VD--SICVYRAGYVA 569
+ Y E + + + F + RK +V +R +EE A L D S Y AG A
Sbjct: 205 IRYTLLEKQKSYNQLVNFLKDRKADFGIVYCLSRNRVEEVAAKLQADGYSALPYHAGLPA 264
Query: 570 EDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRER 629
R + + F + + AT A +GID ++ +H P I +Q+ GR+GR
Sbjct: 265 AQRGKTQEAFQRDDVNIIVATIAFGMGIDKPNVRFVVHYDLPKHIEGYYQETGRAGRDGL 324
Query: 630 PSLAV 634
PS A+
Sbjct: 325 PSEAL 329
Score = 68 (29.0 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 248 LKST-GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVL 292
L+ T G Q + I + +AG++ V T GKSLCY +P L
Sbjct: 9 LRQTFGYENFRPLQEKIINSVIAGEDNFVLMPTGGGKSLCYQIPAL 54
>UNIPROTKB|Q4K8U0 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A" species:220664
"Pseudomonas protegens Pf-5" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0006950 "response to stress"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006950
GO:GO:0006355 GO:GO:0003723 EMBL:CP000076 GenomeReviews:CP000076_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
OMA:LPQGMPK RefSeq:YP_261343.1 ProteinModelPortal:Q4K8U0
GeneID:3477377 KEGG:pfl:PFL_4251 PATRIC:19877913
ProtClustDB:CLSK867560 BioCyc:PFLU220664:GIX8-4286-MONOMER
Uniprot:Q4K8U0
Length = 557
Score = 102 (41.0 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 28/121 (23%), Positives = 51/121 (42%)
Query: 243 NTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSS- 301
N +A+ +TG + + Q +SI LAG +++ T +GK+ + LP+L +
Sbjct: 16 NIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHRIDPSKREP 75
Query: 302 SALYMFPTKXXXXXXXXXXXXMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDM 361
AL + PT+ K + VY G +R+ A++++ P
Sbjct: 76 QALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRNGAQIVVATPGR 135
Query: 362 L 362
L
Sbjct: 136 L 136
Score = 73 (30.8 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 45/215 (20%), Positives = 83/215 (38%)
Query: 427 RLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQK-LFVLWNPTSC 485
RLC H+ + + + ++L + LE+I Q LF P S
Sbjct: 135 RLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTVLFSATLPQS- 193
Query: 486 LRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSY- 544
+R++ + D + + + E ++L Q ++ L++
Sbjct: 194 IRAIAERHLKDPKHVKIQSKTQTVTAIEQAHLLVHADQKTSAVLSLLEVEDFDALIMFVR 253
Query: 545 TREILEETAPHLVDSICVYRA----GYVAEDRR-RIERDFFGGKLCGVAATNALELGIDV 599
T++ + A L Y+A G +A+++R R+ G+L V AT+ G+DV
Sbjct: 254 TKQATLDLASALEAK--GYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVAARGLDV 311
Query: 600 GHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAV 634
I ++ P S + GR+GR R A+
Sbjct: 312 PRITHVFNVDMPYDPESYVHRIGRTGRAGREGRAL 346
>POMBASE|SPBC776.09 [details] [associations]
symbol:ste13 "ATP-dependent RNA helicase Ste13"
species:4896 "Schizosaccharomyces pombe" [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=ISO] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0030996 "cell cycle arrest in response to
nitrogen starvation" evidence=IMP] [GO:0031142 "induction of
conjugation upon nitrogen starvation" evidence=IMP] [GO:0051028
"mRNA transport" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBC776.09
GO:GO:0005524 GO:GO:0006417 EMBL:CU329671 GO:GO:0006397
GenomeReviews:CU329671_GR GO:GO:0003723 GO:GO:0000932 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0031142 eggNOG:COG0513 HOGENOM:HOG000268797 KO:K12614
OMA:YSHARMK InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000290
OrthoDB:EOG4QJVWF EMBL:D29795 PIR:S46654 RefSeq:NP_596324.1
ProteinModelPortal:Q09181 SMR:Q09181 STRING:Q09181 PRIDE:Q09181
EnsemblFungi:SPBC776.09.1 GeneID:2541216 KEGG:spo:SPBC776.09
NextBio:20802328 GO:GO:0030996 Uniprot:Q09181
Length = 485
Score = 90 (36.7 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 30/119 (25%), Positives = 54/119 (45%)
Query: 529 IAFCRSRKLCELVLSYTREILEETAPHLVDSICVY-RAGYVAEDRRRIERDFFGGKLCGV 587
I FC S EL+ ++I E + C Y A + R R+ +F G +
Sbjct: 285 IIFCNSTNRVELL---AKKITE------LGYSCFYSHAKMLQSHRNRVFHNFRNGVCRNL 335
Query: 588 AATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAV-YVAFEGPLDQY 645
++ L GID+ ++V ++ FP + + + GRSGR LA+ ++++ + Y
Sbjct: 336 VCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHRGLAISFISWADRFNLY 394
Score = 84 (34.6 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 22/101 (21%), Positives = 44/101 (43%)
Query: 260 QAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSS-SALYMFPTKXXXXXXXX 318
Q ESI +L+G++++ +GK+ + +P LE + S L + PT+
Sbjct: 71 QEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQ 130
Query: 319 XXXXMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNP 359
+ K + + + G T + D + L D +++ P
Sbjct: 131 VCKTLGKHMNVKVMVTT-GGTTLRDDIIRLNDTVHIVVGTP 170
>UNIPROTKB|F1NPI7 [details] [associations]
symbol:RECQL "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000733 "DNA strand renaturation"
evidence=IEA] [GO:0003678 "DNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0015630 "microtubule
cytoskeleton" evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0015630
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0000733
GO:GO:0008026 OMA:ESSQTCH EMBL:AADN02006609 IPI:IPI00602593
Ensembl:ENSGALT00000021517 Uniprot:F1NPI7
Length = 661
Score = 96 (38.9 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 20/52 (38%), Positives = 33/52 (63%)
Query: 242 DNTKSALKST-GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVL 292
+ K+AL++ + K S Q E++ A++AGK++ + T GKSLCY LP +
Sbjct: 77 EKIKTALQNKFKLPKFRSLQLETVNATMAGKDIFLVMPTGGGKSLCYQLPAV 128
Score = 81 (33.6 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 19/77 (24%), Positives = 40/77 (51%)
Query: 563 YRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAG 622
Y A A+ + ++ + + ++ V AT A +GID + +H S+ + +Q++G
Sbjct: 344 YHANMDAKYKTKVHKGWAANQIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESG 403
Query: 623 RSGRRERPSLAV-YVAF 638
R+GR ++ + + Y F
Sbjct: 404 RAGRDDQKADCILYYGF 420
>ZFIN|ZDB-GENE-070912-83 [details] [associations]
symbol:ddx6 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
6" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-070912-83 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00530000063986 InterPro:IPR014014 PROSITE:PS51195
EMBL:CR759774 IPI:IPI00505165 ProteinModelPortal:E7FD91
Ensembl:ENSDART00000087382 Bgee:E7FD91 Uniprot:E7FD91
Length = 485
Score = 87 (35.7 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 29/90 (32%), Positives = 42/90 (46%)
Query: 547 EILEETAPHLVDSICVY-RAGYVAEDRRRIERDFFGGKLC-GVAATNALELGIDVGHIDV 604
E+L + L S C Y A E R R+ DF G LC + T+ GID+ ++V
Sbjct: 350 ELLAKKISQLGYS-CFYIHAKMRQEHRNRVFHDFRNG-LCRNLVCTDLFTRGIDIQAVNV 407
Query: 605 TLHLGFPGSIASLWQQAGRSGRRERPSLAV 634
++ FP + + GRSGR LA+
Sbjct: 408 VINFDFPKLGETYLHRIGRSGRFGHLGLAI 437
Score = 87 (35.7 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 25/102 (24%), Positives = 45/102 (44%)
Query: 260 QAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEA--LSHDLSSSALYMFPTKXXXXXXX 317
Q ESI +L+G++++ +GKS Y +P+LE L D +A+ + PT+
Sbjct: 124 QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDSIQAAVVIVPTRELALQVS 183
Query: 318 XXXXXMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNP 359
++K + G + D M L + ++I P
Sbjct: 184 QICIQVSKHMGGVKVMATTGGTNLRDDIMRLDETVHVVIATP 225
>TAIR|locus:504955106 [details] [associations]
symbol:emb1138 "embryo defective 1138" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0009941
"chloroplast envelope" evidence=IDA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009570 GO:GO:0016020 GO:GO:0046872 GO:GO:0008270
GO:GO:0009941 GO:GO:0003723 EMBL:AF058914 Gene3D:4.10.60.10
SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268805 UniGene:At.23875 EMBL:AJ010457 EMBL:AC137518
EMBL:AY080625 EMBL:AY091068 EMBL:AY094485 EMBL:AY123000
EMBL:AY128278 EMBL:BT000713 EMBL:BT002289 EMBL:BT002456
EMBL:AY102126 EMBL:BT004533 EMBL:AK229821 IPI:IPI00523172
IPI:IPI00656967 PIR:T01202 PIR:T51738 RefSeq:NP_001031943.1
RefSeq:NP_680225.2 UniGene:At.66764 ProteinModelPortal:Q8L7S8
SMR:Q8L7S8 STRING:Q8L7S8 PaxDb:Q8L7S8 PRIDE:Q8L7S8
EnsemblPlants:AT5G26742.2 GeneID:832713 KEGG:ath:AT5G26742
GeneFarm:1570 TAIR:At5g26742 InParanoid:Q8L7S8 OMA:ISHEQGW
PhylomeDB:Q8L7S8 ProtClustDB:CLSN2680279 Genevestigator:Q8L7S8
Uniprot:Q8L7S8
Length = 748
Score = 92 (37.4 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 24/97 (24%), Positives = 48/97 (49%)
Query: 540 LVLSYTREILEETAPHLVDSICVYRA-GYVAEDRR-RIERDFFGGKLCGVAATNALELGI 597
+V + T+ +E + L +SI G +++ +R R F GK + AT+ G+
Sbjct: 355 IVFTQTKRDADEVSLALSNSIATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGL 414
Query: 598 DVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAV 634
D+ ++D+ +H P + ++GR+GR + A+
Sbjct: 415 DIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAI 451
Score = 86 (35.3 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 14/60 (23%), Positives = 36/60 (60%)
Query: 239 ALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHD 298
+L + +L+ GI+ L+ Q ++ +L G++++ T +GK+L + +P+++ L+ +
Sbjct: 108 SLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEE 167
>SGD|S000003570 [details] [associations]
symbol:HCA4 "DEAD box RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0005730 "nucleolus" evidence=IEA;IC]
[GO:0006364 "rRNA processing" evidence=IEA;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA;IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000003570
GO:GO:0005524 GO:GO:0005730 EMBL:BK006943 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
OMA:MFERKNQ OrthoDB:EOG4R53B0 EMBL:U72149 EMBL:Z49308 EMBL:AY693118
PIR:S56805 RefSeq:NP_012501.1 ProteinModelPortal:P20448 SMR:P20448
DIP:DIP-6819N IntAct:P20448 MINT:MINT-620511 STRING:P20448
PaxDb:P20448 PeptideAtlas:P20448 EnsemblFungi:YJL033W GeneID:853419
KEGG:sce:YJL033W CYGD:YJL033w GeneTree:ENSGT00550000074980
NextBio:973942 Genevestigator:P20448 GermOnline:YJL033W
Uniprot:P20448
Length = 770
Score = 101 (40.6 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 242 DNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL 295
D T L+ + KL QA+SI SL G +V+ A T SGK+L + +PV+E L
Sbjct: 50 DPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVIEKL 103
Score = 77 (32.2 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 41/191 (21%), Positives = 81/191 (42%)
Query: 451 EHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDM------DDTRNAA 504
+ C+++ TL+ I + SP Q L + + + S TD D +
Sbjct: 197 DRCLDMGFKKTLDAIVSTLSPSRQTLLFSATQSQSVADLARLSLTDYKTVGTHDVMDGSV 256
Query: 505 NKTSSPISEVSYLFAEM-VQHGLRCI-AFCRSRKLCELV--LSYTREI--LEETAPHLVD 558
NK +S + + E+ + L + +F +S C+++ LS ++++ + ET +
Sbjct: 257 NKEASTPETLQQFYIEVPLADKLDILFSFIKSHLKCKMIVFLSSSKQVHFVYETFRKMQP 316
Query: 559 SICVYRAGYVAEDRRRIER-DFFGG--KLCGVAATNALELGIDVGHIDVTLHLGFPGSIA 615
I + + R R E D F ++C + AT+ + GID +D + + P +
Sbjct: 317 GISLMHLHGRQKQRARTETLDKFNRAQQVC-LFATDVVARGIDFPAVDWVVQVDCPEDVD 375
Query: 616 SLWQQAGRSGR 626
+ + GR R
Sbjct: 376 TYIHRVGRCAR 386
>UNIPROTKB|F1P3V1 [details] [associations]
symbol:BLM "Bloom syndrome protein homolog" species:9031
"Gallus gallus" [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0051880 "G-quadruplex DNA binding" evidence=IEA] [GO:0000079
"regulation of cyclin-dependent protein serine/threonine kinase
activity" evidence=IEA] [GO:0000405 "bubble DNA binding"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000781 "chromosome, telomeric region" evidence=IEA]
[GO:0000800 "lateral element" evidence=IEA] [GO:0001673 "male germ
cell nucleus" evidence=IEA] [GO:0002039 "p53 binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005657 "replication fork"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0009378 "four-way junction helicase
activity" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0016363 "nuclear matrix" evidence=IEA]
[GO:0016605 "PML body" evidence=IEA] [GO:0031297 "replication fork
processing" evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA
helicase activity" evidence=IEA] [GO:0045120 "pronucleus"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0045950 "negative regulation of
mitotic recombination" evidence=IEA] [GO:0046632 "alpha-beta T cell
differentiation" evidence=IEA] [GO:0046641 "positive regulation of
alpha-beta T cell proliferation" evidence=IEA] [GO:0051098
"regulation of binding" evidence=IEA] [GO:0051259 "protein
oligomerization" evidence=IEA] [GO:0051782 "negative regulation of
cell division" evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF08072 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00490 SMART:SM00956 GO:GO:0051259 GO:GO:0005524
GO:GO:0005737 GO:GO:0045893 GO:GO:0000079 GO:GO:0005730
GO:GO:0016605 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006310 GO:GO:0001673 GO:GO:0003697 GO:GO:0016363
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0000781 GO:GO:0000723 GO:GO:0005657
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000733 GO:GO:0000800 GO:GO:0045120
GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0051782
GO:GO:0045950 GO:GO:0046641 GO:GO:0051098 GO:GO:0031297
EMBL:AADN02038832 IPI:IPI00585933 Ensembl:ENSGALT00000013437
OMA:CDTTAAI ArrayExpress:F1P3V1 Uniprot:F1P3V1
Length = 1380
Score = 100 (40.3 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 29/99 (29%), Positives = 47/99 (47%)
Query: 529 IAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGV- 587
I +C SR C+ T IL++ + Y AG +R +++ + + C V
Sbjct: 860 IIYCLSRHECDT----TAAILQKEGL----AALAYHAGLTDSNRDLVQKKWVNQEGCQVI 911
Query: 588 AATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGR 626
AT A +GID + +H P SI +Q++GR+GR
Sbjct: 912 CATIAFGMGIDKPDVRYVIHASLPKSIEGYYQESGRAGR 950
Score = 83 (34.3 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 252 GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLP 290
G+ ++Q E+I A+L G++ + T GKSLCY LP
Sbjct: 632 GLHSFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLP 670
>DICTYBASE|DDB_G0292130 [details] [associations]
symbol:blm "Bloom syndrome protein" species:44689
"Dictyostelium discoideum" [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA;ISS] [GO:0006281 "DNA repair" evidence=IEA;ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IC] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00490 SMART:SM00956
dictyBase:DDB_G0292130 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000155_GR EMBL:AAFI02000187 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 eggNOG:COG0514 KO:K10901
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
RefSeq:XP_629849.1 ProteinModelPortal:Q54DM3 STRING:Q54DM3
EnsemblProtists:DDB0233082 GeneID:8628529 KEGG:ddi:DDB_G0292130
InParanoid:Q54DM3 OMA:IANCEAS ProtClustDB:CLSZ2846594
Uniprot:Q54DM3
Length = 1259
Score = 115 (45.5 bits), Expect = 0.00034, Sum P(3) = 0.00034
Identities = 33/121 (27%), Positives = 59/121 (48%)
Query: 506 KTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRA 565
KT + ++S F I +C S+ CE V RE L+ +A H Y A
Sbjct: 728 KTKQVVDDMSK-FIHSTYPDKSGIVYCISKYDCENVAKRLRE-LKISAAH-------YHA 778
Query: 566 GYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSG 625
G ++R +++ ++ G++ + AT A +GI+ + +H P S+ +Q++GR+G
Sbjct: 779 GLENDERAKVQANWQKGRIKVIVATIAFGMGINKADVRFVIHHSVPKSLEGYYQESGRAG 838
Query: 626 R 626
R
Sbjct: 839 R 839
Score = 75 (31.5 bits), Expect = 0.00034, Sum P(3) = 0.00034
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 252 GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVL 292
G +Q E I ++L G + V T GKSLCY +P L
Sbjct: 523 GFHVFRENQREIINSTLEGNDTFVLMPTGGGKSLCYQIPAL 563
Score = 38 (18.4 bits), Expect = 0.00034, Sum P(3) = 0.00034
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 397 LFIRFVVIDEAH 408
LF R +VIDEAH
Sbjct: 647 LFSR-IVIDEAH 657
>TIGR_CMR|GSU_0898 [details] [associations]
symbol:GSU_0898 "ATP-dependent DNA helicase RecQ"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0009432
HOGENOM:HOG000044388 KO:K03654 TIGRFAMs:TIGR01389 OMA:YCLSRAK
RefSeq:NP_951954.1 ProteinModelPortal:Q74ER2 SMR:Q74ER2
GeneID:2687381 KEGG:gsu:GSU0898 PATRIC:22024565
ProtClustDB:CLSK828090 BioCyc:GSUL243231:GH27-885-MONOMER
Uniprot:Q74ER2
Length = 603
Score = 115 (45.5 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 33/106 (31%), Positives = 52/106 (49%)
Query: 529 IAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVA 588
I +C SRK E E+ E+ V++ Y AG +R R++ F + V
Sbjct: 232 IVYCLSRKRVE-------EVAEKLRAAGVEA-GAYHAGLADAERSRVQEAFLRDDIRVVV 283
Query: 589 ATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAV 634
AT A +GID ++ +H P +I S +Q+ GR+GR P+ A+
Sbjct: 284 ATVAFGMGIDKPNVRFVVHYDLPKNIESYYQETGRAGRDGLPAEAL 329
Score = 59 (25.8 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 244 TKSALKST-GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVL 292
T + L++ G Q E + G + V T GKSLCY +P L
Sbjct: 5 TLAVLRTVFGYRSFRPFQEEIVDRVARGGDTFVLMPTGGGKSLCYQIPSL 54
>FB|FBgn0027602 [details] [associations]
symbol:CG8611 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 KO:K14806
GeneTree:ENSGT00550000075041 EMBL:AF145609 RefSeq:NP_573214.1
RefSeq:NP_788922.1 UniGene:Dm.3172 ProteinModelPortal:Q86B47
SMR:Q86B47 IntAct:Q86B47 MINT:MINT-776497 PaxDb:Q86B47 PRIDE:Q86B47
EnsemblMetazoa:FBtr0074440 GeneID:32725 KEGG:dme:Dmel_CG8611
UCSC:CG8611-RB FlyBase:FBgn0027602 InParanoid:Q86B47 OMA:YTERDPE
OrthoDB:EOG47SQVT PhylomeDB:Q86B47 GenomeRNAi:32725 NextBio:780053
Bgee:Q86B47 Uniprot:Q86B47
Length = 975
Score = 102 (41.0 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 32/117 (27%), Positives = 53/117 (45%)
Query: 253 ISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSS-------ALY 305
I +L S Q ++I L GK+V+V + T SGK+L Y LP++E L AL
Sbjct: 348 IRELTSVQQKTIPEVLQGKDVLVRSQTGSGKTLAYALPLVELLQKQQPRIQRKDGVLALV 407
Query: 306 MFPTKXXXXXXXXXXXXMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDML 362
+ PT+ + K + + + G++ + ++ LR +LI P L
Sbjct: 408 IVPTRELVMQTYELIQKLVKPYTWIVPGSLLGGESRKSEKARLRKGINILIGTPGRL 464
Score = 77 (32.2 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 24/82 (29%), Positives = 39/82 (47%)
Query: 571 DRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERP 630
+R+ + R F C + AT+ + GIDV I + + P + A + GR+ R R
Sbjct: 692 ERQGVFRGFRDCASCVLLATDVVGRGIDVPDIKLVVQYTPPQTTADFVHRVGRTARAGRK 751
Query: 631 SLAVYVAFEGPLDQYFMKYPEK 652
AV F P + F+++ EK
Sbjct: 752 GRAVL--FLTPSEAQFVRHLEK 771
>MGI|MGI:1915247 [details] [associations]
symbol:Ddx59 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 59"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915247
GO:GO:0005524 GO:GO:0046872 GO:GO:0003723 GO:GO:0005622
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
Pfam:PF04438 PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
GeneTree:ENSGT00610000086076 CTD:83479 HOGENOM:HOG000006599
HOVERGEN:HBG106120 OMA:VTRPIID EMBL:AK004833 EMBL:AK013179
EMBL:AK076462 EMBL:BC023840 IPI:IPI00119928 IPI:IPI00226119
RefSeq:NP_080776.1 UniGene:Mm.385462 UniGene:Mm.486546
ProteinModelPortal:Q9DBN9 SMR:Q9DBN9 PhosphoSite:Q9DBN9
PRIDE:Q9DBN9 Ensembl:ENSMUST00000027655 GeneID:67997 KEGG:mmu:67997
UCSC:uc007cut.1 UCSC:uc007cuu.2 InParanoid:Q9DBN9 OrthoDB:EOG4K9BBZ
ChiTaRS:DDX59 NextBio:326168 Bgee:Q9DBN9 CleanEx:MM_DDX59
Genevestigator:Q9DBN9 Uniprot:Q9DBN9
Length = 619
Score = 107 (42.7 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 55/223 (24%), Positives = 93/223 (41%)
Query: 205 EMVEHLRK--GIGSQGQMVHVEDISARKAVLVE---IPDALLDNTKSALKSTGISKLYSH 259
+ +E L++ GI QGQ D+ AR + E P+ L N LK +G
Sbjct: 180 DQIETLKQQLGISVQGQ-----DV-ARPIIDFEHCGFPETLNQN----LKKSGYEVPTPI 229
Query: 260 QAESIMASLAGKNVVVATMTSSGKSLCYNLPVL-EALSHDLSSSALYMFPTKXXXXXXXX 318
Q + I L G++++ + T SGK+ + LPV+ A S D + SAL + PT+
Sbjct: 230 QMQMIPVGLLGRDILASADTGSGKTAAFLLPVIIRAFSEDKTPSALILTPTRELAIQIER 289
Query: 319 XXXXMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILS 378
+ + + G LR + +++I P L + I+ Q S LS
Sbjct: 290 QAKELMSGLPRMKTVLLVGGLPLPPQLYRLRQHVKVIIATPGRL-LDIIK---QSSVSLS 345
Query: 379 NLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALI 421
++++ T + + F + V+D G C T L+
Sbjct: 346 GIKIVVVDEADTMLKMGF---QQQVLDVLEHTPG--DCQTILV 383
Score = 67 (28.6 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 19/72 (26%), Positives = 35/72 (48%)
Query: 568 VAEDRRRIER-DFFGGKLCG----VAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAG 622
+ ++ ++ER D G L G V +T L G+D+ ++ + ++ P S+ Q G
Sbjct: 475 IHSEKSQVERRDILKGLLEGDYEVVVSTGVLGRGLDLVNVKLVVNFDMPSSMDEYVHQVG 534
Query: 623 RSGRRERPSLAV 634
R GR + A+
Sbjct: 535 RVGRLGQNGTAI 546
>FB|FBgn0010220 [details] [associations]
symbol:Dbp45A "DEAD box protein 45A" species:7227 "Drosophila
melanogaster" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS;NAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE013599
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 GO:GO:0000381
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
GeneTree:ENSGT00670000098028 EMBL:L13612 EMBL:Z23266 EMBL:AY058728
PIR:S38329 RefSeq:NP_476927.1 UniGene:Dm.4231
ProteinModelPortal:Q07886 SMR:Q07886 PaxDb:Q07886
EnsemblMetazoa:FBtr0088564 GeneID:35917 KEGG:dme:Dmel_CG12759
CTD:35917 FlyBase:FBgn0010220 InParanoid:Q07886 OMA:CQLLSMT
OrthoDB:EOG431ZDJ PhylomeDB:Q07886 GenomeRNAi:35917 NextBio:795815
Bgee:Q07886 GermOnline:CG12759 Uniprot:Q07886
Length = 521
Score = 94 (38.1 bits), Expect = 0.00041, Sum P(3) = 0.00041
Identities = 32/117 (27%), Positives = 50/117 (42%)
Query: 248 LKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHD-LSSSALYM 306
L G+ Q + I A LAG++ + A T SGK+ + LP+LE LS + +S AL +
Sbjct: 22 LTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILERLSEEPVSHFALVL 81
Query: 307 FPTKXXXXXXXXXXXXMTKAFDASIDIGVYDGDTTQK-DRMWLRDNARLLITNPDML 362
PT +A + + V G T Q + L +++ P L
Sbjct: 82 TPTHELAYQISEQFLVAGQAM--GVRVCVVSGGTDQMVESQKLMQRPHIVVAMPGRL 136
Score = 82 (33.9 bits), Expect = 0.00041, Sum P(3) = 0.00041
Identities = 26/115 (22%), Positives = 58/115 (50%)
Query: 531 FCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRR--RIERDFFGGKLCGVA 588
F ++K C+L LS T + +E +D++C++ G++ + R + R F ++ +
Sbjct: 257 FTNTKKYCQL-LSMTLKNME------IDNVCLH--GFMRQKERVAALSR-FKSNQIRTLI 306
Query: 589 ATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLD 643
AT+ G+D+ +++ ++ P + + GR+ R R +++ + F P D
Sbjct: 307 ATDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTARAGRKGMSISI-FRFPRD 360
Score = 39 (18.8 bits), Expect = 0.00041, Sum P(3) = 0.00041
Identities = 16/58 (27%), Positives = 25/58 (43%)
Query: 673 QHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEK 730
QH AA E +L+ DE++ + S K +G S D+ K + + EK
Sbjct: 452 QHAEPAASEEGKALLQDERF--KSVDSARFEKKGKGR-SRATQEDTPTKPLKRLNKEK 506
>FB|FBgn0004556 [details] [associations]
symbol:Dbp73D "Dead box protein 73D" species:7227 "Drosophila
melanogaster" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=NAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014296
GO:GO:0005730 GO:GO:0022008 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 KO:K14807 GeneTree:ENSGT00550000075141 EMBL:M74824
EMBL:AF132173 EMBL:BT010045 PIR:S28762 RefSeq:NP_476833.1
UniGene:Dm.3199 ProteinModelPortal:P26802 SMR:P26802 PaxDb:P26802
PRIDE:P26802 EnsemblMetazoa:FBtr0075347 GeneID:39871
KEGG:dme:Dmel_CG9680 CTD:39871 FlyBase:FBgn0004556
InParanoid:P26802 OMA:CSKTELE OrthoDB:EOG4B8GVH PhylomeDB:P26802
GenomeRNAi:39871 NextBio:815810 Bgee:P26802 GermOnline:CG9680
Uniprot:P26802
Length = 687
Score = 104 (41.7 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 27/71 (38%), Positives = 36/71 (50%)
Query: 569 AEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRE 628
A+ R RDF GK+ G+ ++AL GIDV +DV L P I + + GR+ R
Sbjct: 484 AKVRNERLRDFAAGKINGLICSDALARGIDVADVDVVLSYETPRHITTYIHRVGRTARAG 543
Query: 629 RPSLAVYVAFE 639
R AV V E
Sbjct: 544 RKGTAVTVLTE 554
Score = 71 (30.1 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 28/102 (27%), Positives = 48/102 (47%)
Query: 218 GQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAG------- 270
G + E++ A +A+ + D L T ALK I +L+ Q + I L
Sbjct: 124 GSLQPEEEVPASEAI--DQLDYLEKYTCQALKQMKIKRLFPVQKQVIPWILEAHAKPPPF 181
Query: 271 --KNVVVATMTSSGKSLCYNLPVLEALSH--DLSSSALYMFP 308
+++ V+ T SGK+L + +P+++ LS D AL + P
Sbjct: 182 RPRDICVSAPTGSGKTLAFAIPIVQLLSQRVDCKVRALVVLP 223
>POMBASE|SPBC24C6.02 [details] [associations]
symbol:SPBC24C6.02 "ATP-dependent RNA helicase Spb4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
processing" evidence=ISO] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
PomBase:SPBC24C6.02 GO:GO:0005524 GO:GO:0005730 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268803 KO:K14809
OMA:CACVEYW OrthoDB:EOG46MFT3 PIR:T39966 RefSeq:NP_595956.1
ProteinModelPortal:O74764 STRING:O74764 EnsemblFungi:SPBC24C6.02.1
GeneID:2540598 KEGG:spo:SPBC24C6.02 NextBio:20801723 Uniprot:O74764
Length = 606
Score = 90 (36.7 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 245 KSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSH-DLSSS- 302
K+A+ + G K+ QA +I L K++VV +T SGK+L Y LP + ++ D +
Sbjct: 13 KNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETG 72
Query: 303 --ALYMFPTK 310
AL + PT+
Sbjct: 73 LGALIVAPTR 82
Score = 84 (34.6 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 29/108 (26%), Positives = 46/108 (42%)
Query: 573 RRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSL 632
R E+ K + T+ G+D+ ++D L L P S + GR+GR R +
Sbjct: 299 RNFEKFKKSNKKTVLFTTDIASRGLDIPNVDFVLQLDPPLDPKSFSHRCGRAGRAGRAGV 358
Query: 633 AVYVAFEGPLDQY-----FMKYPEKLFKSPIECCHIDAQNHKVLEQHL 675
A+ + +G ++Y K P +PIE +D KVL L
Sbjct: 359 AIVLLNDGREEEYEELLRVRKVPITRIDTPIEA--LDLSRLKVLTHEL 404
>TAIR|locus:2074429 [details] [associations]
symbol:RECQI1 "RECQ helicase l1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0042631 "cellular response to water deprivation" evidence=IEP]
[GO:0070417 "cellular response to cold" evidence=IEP] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
GO:GO:0070417 GO:GO:0042631 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AC012393 eggNOG:COG0514 KO:K10901
TIGRFAMs:TIGR00614 GO:GO:0008026 HSSP:P15043 HOGENOM:HOG000044388
EMBL:AJ404470 IPI:IPI00524157 RefSeq:NP_187225.2 UniGene:At.10170
UniGene:At.49591 ProteinModelPortal:Q9FT74 SMR:Q9FT74
EnsemblPlants:AT3G05740.1 GeneID:819743 KEGG:ath:AT3G05740
TAIR:At3g05740 InParanoid:Q9FT74 OMA:RFVIHNT PhylomeDB:Q9FT74
ProtClustDB:CLSN2690733 Genevestigator:Q9FT74 Uniprot:Q9FT74
Length = 606
Score = 107 (42.7 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 34/123 (27%), Positives = 59/123 (47%)
Query: 506 KTSSPISEVSYLFAEMV--QHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVY 563
KT P+ ++ L + Q G I +C S+ C V + E + V ++ Y
Sbjct: 409 KTKEPLKQLQELLRDRFKDQSG---IVYCLSKSECVDVAKFLNEKCK------VKTV-YY 458
Query: 564 RAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGR 623
AG A+ R ++R + G++ V AT A +GID + +H ++ S +Q++GR
Sbjct: 459 HAGVPAKQRVDVQRKWQTGEVRIVCATIAFGMGIDKADVRFVIHNTLSKAVESYYQESGR 518
Query: 624 SGR 626
+GR
Sbjct: 519 AGR 521
Score = 66 (28.3 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 260 QAESIMASLAGKNVVVATMTSSGKSLCYNLP 290
Q ++ AS+ K+ V T GKSLCY LP
Sbjct: 211 QHQACRASMERKDCFVLMPTGGGKSLCYQLP 241
>UNIPROTKB|F1SR01 [details] [associations]
symbol:RECQL "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0015630 "microtubule cytoskeleton" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000733 "DNA strand
renaturation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF09382 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0015630 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0000733
OMA:ESSQTCH EMBL:CU633485 EMBL:CU457490 Ensembl:ENSSSCT00000000624
Uniprot:F1SR01
Length = 649
Score = 90 (36.7 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 29/119 (24%), Positives = 54/119 (45%)
Query: 563 YRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAG 622
Y A ED+ + R + ++ V AT A +GID + +H S+ + +Q++G
Sbjct: 344 YHANMEPEDKTTVHRRWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESG 403
Query: 623 RSGRRE-RPSLAVYVAFEGPL----DQYFMKY--PEKLFKSPIECCHIDAQNHKVLEQH 674
R+GR + + +Y F G + M+ +KL++ C +I ++ QH
Sbjct: 404 RAGRDDTKADCILYYGF-GDIFRISSMVVMENVGQQKLYEMVSYCQNISKCRRVLIAQH 461
Score = 84 (34.6 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 253 ISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVL 292
+ K Q E+I +++GK V + T GKSLCY LP L
Sbjct: 89 LQKFRPLQLETINVTMSGKEVFLVMPTGGGKSLCYQLPAL 128
>WB|WBGene00002083 [details] [associations]
symbol:inf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0019915 "lipid storage" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0008340 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0040011
GO:GO:0000003 GO:GO:0019915 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:FO081266 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 KO:K03257 OMA:TENDARQ
EMBL:Z12116 PIR:S26281 RefSeq:NP_001022623.1 RefSeq:NP_001022624.1
UniGene:Cel.6803 ProteinModelPortal:P27639 SMR:P27639
DIP:DIP-27102N IntAct:P27639 MINT:MINT-1112147 STRING:P27639
PaxDb:P27639 PRIDE:P27639 EnsemblMetazoa:F57B9.6a.1
EnsemblMetazoa:F57B9.6a.2 GeneID:175966 KEGG:cel:CELE_F57B9.6
UCSC:F57B9.6a.1 CTD:175966 WormBase:F57B9.6a WormBase:F57B9.6b
InParanoid:P27639 NextBio:890522 Uniprot:P27639
Length = 402
Score = 84 (34.6 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 25/89 (28%), Positives = 41/89 (46%)
Query: 571 DRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERP 630
+R I R+F G + T+ L GIDV + + ++ P + + + GRSGR R
Sbjct: 306 ERDTIMREFRSGSSRVLITTDILARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRK 365
Query: 631 SLAVYVAFEGPLDQYFMKYPEKLFKSPIE 659
+A+ E Q +K E + + IE
Sbjct: 366 GVAINFVTENDARQ--LKEIESYYTTQIE 392
Score = 84 (34.6 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 25/121 (20%), Positives = 54/121 (44%)
Query: 252 GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSH-DLSSSALYMFPTK 310
G K + Q +I+ GK+V+ + +GK+ +++ +L+ + H D AL M PT+
Sbjct: 48 GFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQRIDHEDPHVQALVMAPTR 107
Query: 311 XXXXXXXXXXXXMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNP----DMLHMSI 366
+ + + +I + G + + D+ L +++ P DM++ +
Sbjct: 108 ELAQQIQKVMSALGEYLNVNI-LPCIGGTSVRDDQRKLEAGIHVVVGTPGRVGDMINRNA 166
Query: 367 L 367
L
Sbjct: 167 L 167
>TIGR_CMR|SO_4034 [details] [associations]
symbol:SO_4034 "ATP-dependent RNA helicase DeaD"
species:211586 "Shewanella oneidensis MR-1" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0009631 "cold
acclimation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:LPQGMPK RefSeq:NP_719564.1
ProteinModelPortal:Q8EA75 GeneID:1171660 KEGG:son:SO_4034
PATRIC:23527732 ProtClustDB:CLSK907463 Uniprot:Q8EA75
Length = 623
Score = 99 (39.9 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 30/127 (23%), Positives = 54/127 (42%)
Query: 240 LLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDL 299
L +N AL G K Q+ SI +AGK+++ T +GK+ + LP+L ++
Sbjct: 13 LSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNKVTSQT 72
Query: 300 SSSALYMFPTKXXXXXXXXXXXXMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNP 359
+ L + PT+ K + +Y G + Q+ L+ ++++ P
Sbjct: 73 TPQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALKRGPQVIVGTP 132
Query: 360 D--MLHM 364
M HM
Sbjct: 133 GRVMDHM 139
Score = 73 (30.8 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 41/191 (21%), Positives = 74/191 (38%)
Query: 451 EHCMELANLSTLELIQNDGSPCAQ-KLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSS 509
+ +++ + +E I P Q LF P ++ V NK + + AA+ T+
Sbjct: 158 DEMLKMGFIDDIEWILEHTPPQRQLALFSATMPEQ-IKRVANKHLKNATNISIAASHTT- 215
Query: 510 PISEVSYLFAEMVQHG-LRCIAFCRSRKLCELVLSY--TREILEETAPHLVD---SICVY 563
+ + F ++ QH L + + E ++ + TR E A L +
Sbjct: 216 -VDSIEQRFVQVSQHNKLEALVRVLEVENTEGIIIFVRTRNSCVELAEKLEARGYASSPL 274
Query: 564 RAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGR 623
+ R R GKL + AT+ G+DV I ++ P + + GR
Sbjct: 275 HGDMNQQARERAVEQLKNGKLDILIATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGR 334
Query: 624 SGRRERPSLAV 634
+GR R +A+
Sbjct: 335 TGRAGRTGMAI 345
>UNIPROTKB|Q73EU1 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:222523 "Bacillus cereus ATCC 10987" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017194
RefSeq:NP_976595.1 ProteinModelPortal:Q73EU1 STRING:Q73EU1
DNASU:2752637 EnsemblBacteria:EBBACT00000029857 GeneID:2752637
GenomeReviews:AE017194_GR KEGG:bca:BCE_0267 PATRIC:18849372
Uniprot:Q73EU1
Length = 525
Score = 100 (40.3 bits), Expect = 0.00073, Sum P(2) = 0.00073
Identities = 27/121 (22%), Positives = 56/121 (46%)
Query: 240 LLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL-SHD 298
L D+ +++S G + QAE+I +L GK+++ T +GK+ + LP+L+ + +H
Sbjct: 9 LSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHK 68
Query: 299 LSSSALYMFPTKXXXXXXXXXXXXMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITN 358
S + + PT+ + K I + +Y G + L+ + +++
Sbjct: 69 ESVQGIVIAPTRELAIQVGEELYKIGKHKRVRI-LPIYGGQDINRQIRALKKHPHIIVGT 127
Query: 359 P 359
P
Sbjct: 128 P 128
Score = 70 (29.7 bits), Expect = 0.00073, Sum P(2) = 0.00073
Identities = 48/244 (19%), Positives = 98/244 (40%)
Query: 451 EHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSP 510
+ + + + +E I D Q L +R + + T+ + A + + P
Sbjct: 154 DEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMP 213
Query: 511 ISEVSYLFAEMVQHG--LRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYV 568
+ YL + + L + +S +L +V T+ ++E + L ++ Y A +
Sbjct: 214 NIQQFYLEVQEKKKFDVLTRLLDIQSPELA-IVFGRTKRRVDELSEAL--NLRGYAAEGI 270
Query: 569 AED-----RRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGR 623
D R + R F G + + AT+ G+D+ + + P S + GR
Sbjct: 271 HGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGR 330
Query: 624 SGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQN-HKVLE--QHLVCAAL 680
+GR + +A+ F P + +K E+ K ++ +DA + LE Q L+ L
Sbjct: 331 TGRAGKKGIAML--FVTPRESGQLKNIERTTKRKMD--RMDAPTLDEALEGQQRLIAEKL 386
Query: 681 EHPL 684
++ +
Sbjct: 387 QNTI 390
>TIGR_CMR|CPS_3401 [details] [associations]
symbol:CPS_3401 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_270076.1 ProteinModelPortal:Q47YP4
STRING:Q47YP4 GeneID:3521057 KEGG:cps:CPS_3401 PATRIC:21469753
OMA:HLIKEHQ ProtClustDB:CLSK907013
BioCyc:CPSY167879:GI48-3430-MONOMER Uniprot:Q47YP4
Length = 432
Score = 93 (37.8 bits), Expect = 0.00075, Sum P(2) = 0.00075
Identities = 28/114 (24%), Positives = 49/114 (42%)
Query: 260 QAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSA----------LYMFPT 309
QA +I + AG++++ T SGK+ + LP+L+ L D+SS + L + PT
Sbjct: 35 QARAIPSVFAGRDLIAGANTGSGKTATFALPMLQKLREDISSGSKNSKGNFVTGLVLVPT 94
Query: 310 KXXXXXXXXXXXXMTKAFDASID-IGVYDGDTTQKDRMWLRDNARLLITNPDML 362
+ F+ I + V+ G + + LR +L+ P L
Sbjct: 95 RELAKQVADSIKSYAVHFNGEIKTLAVFGGVSVNIQMLALRGGVDILVATPGRL 148
Score = 75 (31.5 bits), Expect = 0.00075, Sum P(2) = 0.00075
Identities = 18/64 (28%), Positives = 31/64 (48%)
Query: 571 DRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERP 630
+R R+ F G + + AT+ G+D+ + V ++ P S + + GRSGR
Sbjct: 293 ERSRVLDGFKAGDIEVLIATDIAARGLDIEKLPVVINFNLPRSPSDYMHRIGRSGRAGEV 352
Query: 631 SLAV 634
LA+
Sbjct: 353 GLAI 356
>UNIPROTKB|O34748 [details] [associations]
symbol:recQ "Probable ATP-dependent DNA helicase RecQ"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0043590 "bacterial nucleoid" evidence=IDA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0005737 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006310 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0043590 GO:GO:0009432 HSSP:P15043
HOGENOM:HOG000044388 EMBL:AF027868 PIR:F69901 RefSeq:NP_389803.1
ProteinModelPortal:O34748 SMR:O34748
EnsemblBacteria:EBBACT00000001699 GeneID:939671 KEGG:bsu:BSU19220
PATRIC:18975693 GenoList:BSU19220 KO:K03654 OMA:HAAYINS
ProtClustDB:CLSK887416 BioCyc:BSUB:BSU19220-MONOMER
TIGRFAMs:TIGR01389 Uniprot:O34748
Length = 591
Score = 102 (41.0 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 24/65 (36%), Positives = 39/65 (60%)
Query: 563 YRAGYVAEDRRRIERD-FFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQA 621
Y G +A+D R+ +++ F +L + AT+A +GID +I LH P + S +Q+A
Sbjct: 260 YHGG-LADDVRKEQQERFLNDELQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEA 318
Query: 622 GRSGR 626
GR+GR
Sbjct: 319 GRAGR 323
Score = 69 (29.3 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 252 GISKLYSHQAESI-MASLAGKNVVVATMTSSGKSLCYNLPVL 292
G K S Q E+I + + A +N T GKS+CY +P L
Sbjct: 14 GYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPAL 55
>TIGR_CMR|SO_4241 [details] [associations]
symbol:SO_4241 "ATP-dependent DNA helicase RecQ"
species:211586 "Shewanella oneidensis MR-1" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043
HOGENOM:HOG000044388 KO:K03654 TIGRFAMs:TIGR01389 OMA:YCLSRAK
RefSeq:NP_719768.1 ProteinModelPortal:Q8E9M8 SMR:Q8E9M8
GeneID:1171845 KEGG:son:SO_4241 PATRIC:23528122
ProtClustDB:CLSK907564 Uniprot:Q8E9M8
Length = 607
Score = 104 (41.7 bits), Expect = 0.00081, Sum P(2) = 0.00081
Identities = 31/104 (29%), Positives = 49/104 (47%)
Query: 523 QHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGG 582
Q+G I +C SR+ + V E L H Y AG E+R ++ F
Sbjct: 233 QNGSSGIIYCSSRRRVDEVA----ERLTLQGFHAK----AYHAGMTPEERGEVQDSFLKD 284
Query: 583 KLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGR 626
++ V AT A +GI+ ++ +H P SI + +Q+ GR+GR
Sbjct: 285 QIDIVVATVAFGMGINKSNVRFVVHYDIPKSIEAYYQETGRAGR 328
Score = 67 (28.6 bits), Expect = 0.00081, Sum P(2) = 0.00081
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 260 QAESIMASLAGKNVVVATMTSSGKSLCYNLPVL 292
Q E I G++ +V T GKSLCY LP L
Sbjct: 30 QREVIERVCRGEDCLVIMPTGGGKSLCYQLPAL 62
>MGI|MGI:103021 [details] [associations]
symbol:Recql "RecQ protein-like" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000733 "DNA
strand renaturation" evidence=ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003678 "DNA helicase activity" evidence=ISO] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0032508 "DNA duplex
unwinding" evidence=ISO] [GO:0043140 "ATP-dependent 3'-5' DNA
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF09382 PROSITE:PS51194
SMART:SM00490 MGI:MGI:103021 GO:GO:0005524 GO:GO:0005634
GO:GO:0015630 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0000733 EMBL:CH466572 KO:K10899 OMA:ESSQTCH
HOGENOM:HOG000044388 CTD:5965 HOVERGEN:HBG057654 EMBL:AB017104
EMBL:AB017105 EMBL:AK137589 EMBL:AK164344 IPI:IPI00129401
IPI:IPI00230278 RefSeq:NP_001191836.1 RefSeq:NP_075529.2
UniGene:Mm.27407 ProteinModelPortal:Q9Z129 SMR:Q9Z129 STRING:Q9Z129
PhosphoSite:Q9Z129 PaxDb:Q9Z129 PRIDE:Q9Z129
Ensembl:ENSMUST00000032370 Ensembl:ENSMUST00000111803 GeneID:19691
KEGG:mmu:19691 InParanoid:Q3TPI5 OrthoDB:EOG4THVSK NextBio:297024
Bgee:Q9Z129 CleanEx:MM_RECQL Genevestigator:Q9Z129
GermOnline:ENSMUSG00000030243 Uniprot:Q9Z129
Length = 648
Score = 93 (37.8 bits), Expect = 0.00082, Sum P(2) = 0.00082
Identities = 22/77 (28%), Positives = 38/77 (49%)
Query: 563 YRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAG 622
Y A ED+ ++ + +L V AT A +GID + +H S+ + +Q++G
Sbjct: 344 YHANMEPEDKTKVHTQWSANELQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESG 403
Query: 623 RSGRRE-RPSLAVYVAF 638
R+GR + R +Y F
Sbjct: 404 RAGRDDSRADCILYYGF 420
Score = 79 (32.9 bits), Expect = 0.00082, Sum P(2) = 0.00082
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 253 ISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVL 292
+ K Q E+I ++A K++ + T GKSLCY LP L
Sbjct: 89 LQKFRPLQLETINVTMARKDIFLVMPTGGGKSLCYQLPAL 128
>UNIPROTKB|Q9I920 [details] [associations]
symbol:BLM "Bloom syndrome protein homolog" species:9031
"Gallus gallus" [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000729 "DNA
double-strand break processing" evidence=ISS] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012532 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006260 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
GO:GO:0004003 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 eggNOG:COG0514 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:AB040747 IPI:IPI00575589 UniGene:Gga.1914
ProteinModelPortal:Q9I920 STRING:Q9I920 PRIDE:Q9I920
HOGENOM:HOG000095239 HOVERGEN:HBG004850 InParanoid:Q9I920
OrthoDB:EOG4640B3 GO:GO:0000729 Uniprot:Q9I920
Length = 1142
Score = 94 (38.1 bits), Expect = 0.00091, Sum P(2) = 0.00091
Identities = 27/99 (27%), Positives = 46/99 (46%)
Query: 529 IAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGV- 587
I +C SR C+ T IL++ + Y AG +R +++ + + C V
Sbjct: 622 IIYCLSRHECDT----TAAILQKEGL----AALAYHAGLTDSNRDLVQKKWVNQEGCQVI 673
Query: 588 AATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGR 626
AT A +GID + +H P S+ + ++GR+GR
Sbjct: 674 CATIAFGMGIDKPDVRYVIHASLPKSVEGYYHESGRAGR 712
Score = 83 (34.3 bits), Expect = 0.00091, Sum P(2) = 0.00091
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 252 GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLP 290
G+ ++Q E+I A+L G++ + T GKSLCY LP
Sbjct: 394 GLHSFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLP 432
>SGD|S000001107 [details] [associations]
symbol:RRP3 "Protein involved in rRNA processing"
species:4932 "Saccharomyces cerevisiae" [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000462 "maturation of
SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IC] [GO:0006364 "rRNA processing"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001107 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:U00061 HOGENOM:HOG000268802
GO:GO:0000462 GeneTree:ENSGT00670000098028 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P EMBL:AY389302 EMBL:AY389303 PIR:S46713
RefSeq:NP_011932.2 ProteinModelPortal:P38712 SMR:P38712
DIP:DIP-6533N IntAct:P38712 MINT:MINT-518716 STRING:P38712
PaxDb:P38712 PeptideAtlas:P38712 EnsemblFungi:YHR065C GeneID:856462
KEGG:sce:YHR065C CYGD:YHR065c NextBio:982111 Genevestigator:P38712
GermOnline:YHR065C Uniprot:P38712
Length = 501
Score = 87 (35.7 bits), Expect = 0.00093, Sum P(2) = 0.00093
Identities = 33/168 (19%), Positives = 70/168 (41%)
Query: 144 MCKLQKRVMSLSVEDLLTYVKERRTDVRGNEVKXXXXXXXXXXXXXXXXXXXXDKSQLLP 203
M K+ KR + ++L + ++ R N+ K +K ++L
Sbjct: 1 MSKIVKRKEKKANDELTSLAEKIRAKALENQKKLIEAEKEGGSESDSEEDATAEKKKVLK 60
Query: 204 LEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAES 263
+ + + +Q + + ++ + L +P+ + A K+ SK Q+++
Sbjct: 61 SKS----KSTVSTQNENTNEDESFESFSELNLVPELI-----QACKNLNYSKPTPIQSKA 111
Query: 264 IMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSS-ALYMFPTK 310
I +L G +++ T SGK+ + +P+L L HD A + PT+
Sbjct: 112 IPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQEPYYACILAPTR 159
Score = 82 (33.9 bits), Expect = 0.00093, Sum P(2) = 0.00093
Identities = 45/180 (25%), Positives = 75/180 (41%)
Query: 479 LWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISE--VSYLFAEMVQHGLRCIAFCRSRK 536
L NP C +V NK QT +D + + YL E + G I F R++
Sbjct: 278 LTNPVKC--AVSNKYQT-VDTLVQTLMVVPGGLKNTYLIYLLNEFI--GKTMIIFTRTKA 332
Query: 537 LCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFF-GGKLCGVAATNALEL 595
E LS +LE +A L G + +++R D F GK + AT+
Sbjct: 333 NAER-LSGLCNLLEFSATAL--------HGDLNQNQRMGSLDLFKAGKRSILVATDVAAR 383
Query: 596 GIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFK 655
G+D+ +D+ ++ P S + GR+ R R ++ + + L+ ++ E L K
Sbjct: 384 GLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLE-LILRIEEVLGK 442
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.134 0.395 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 961 929 0.00091 122 3 11 22 0.37 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 132
No. of states in DFA: 625 (66 KB)
Total size of DFA: 440 KB (2210 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 75.02u 0.13s 75.15t Elapsed: 00:00:05
Total cpu time: 75.04u 0.13s 75.17t Elapsed: 00:00:05
Start: Fri May 10 17:36:52 2013 End: Fri May 10 17:36:57 2013
WARNINGS ISSUED: 1