BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002135
(961 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359491375|ref|XP_002273025.2| PREDICTED: LOW QUALITY PROTEIN: putative ATP-dependent helicase
HRQ1-like [Vitis vinifera]
Length = 1231
Score = 1357 bits (3513), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 663/982 (67%), Positives = 772/982 (78%), Gaps = 61/982 (6%)
Query: 3 KSRGDNSSCLCPVWLKKIVEAFAFVSIFSAHLQLRREKVILSHVKGALNQLEKFGVRVGI 62
+S +S CLCP WLKKI++ F F++IFSA LQL++ + L H+K L+ L +FG +V +
Sbjct: 211 QSGSKSSLCLCPAWLKKIMKTFTFLNIFSAFLQLQQGHITLIHLKEGLDHLGEFGFQVDM 270
Query: 63 EDIENLAVLCPK-------------------------VVQFANDDMESKNHDDSIVIINV 97
EDIE+L+VLCPK VV FA + M S+N D++++IN
Sbjct: 271 EDIEHLSVLCPKLVEICVYDDFLSGYVILISAWFCLKVVHFATNGMPSRNLGDNLIVINS 330
Query: 98 STEERDKVEDNLGSGQKAISLSKIFNAMKKRERSFKTNLWEAVNLLMCK-LQKRVMSLSV 156
ST+ +D+VEDN + QK + +SKI + MKK E FKT+LW AV +LM K + M S+
Sbjct: 331 STQHKDQVEDNSRTAQKQVPISKIVSVMKKLESCFKTHLWRAVKVLMRKNGNEMAMLFSL 390
Query: 157 EDLLTYVKERRTDVRGNEVKRARRSQSSTSSSHSFQRRCSDKSQLLPLEMVEHLRKGIGS 216
EDLL VKE + K+ARRS S+ SS++S Q +C D + LLP+EMVEHLRKG+G
Sbjct: 391 EDLLISVKEGG----AGKAKQARRSWSAVSSTNSAQSKCHDTNPLLPMEMVEHLRKGMGC 446
Query: 217 QGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVA 276
QGQMVHVE+I AR A+ VEIPD L +NTKSAL+ G+++LYSHQAESI ASL GKNVVVA
Sbjct: 447 QGQMVHVEEICARMAIRVEIPDELSENTKSALEHIGVTRLYSHQAESIQASLGGKNVVVA 506
Query: 277 TMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVY 336
TMTSSGKSLCYN+PVLE LS +L S ALY+FPTKALAQDQLRALLAMTK D S+ +GVY
Sbjct: 507 TMTSSGKSLCYNVPVLEVLSQNLLSCALYLFPTKALAQDQLRALLAMTKGSDVSLKMGVY 566
Query: 337 DGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIF 396
DGDT+++DRMWLRDNARLLITNPDMLHMSILP+HGQF RILSNLR
Sbjct: 567 DGDTSEEDRMWLRDNARLLITNPDMLHMSILPFHGQFRRILSNLR--------------- 611
Query: 397 LFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMEL 456
FV+IDEAHAYKGAFGCHTA ILRRL RLC HVYGSDPSF+F TATSANPR+H MEL
Sbjct: 612 ----FVIIDEAHAYKGAFGCHTAFILRRLRRLCHHVYGSDPSFIFCTATSANPRDHAMEL 667
Query: 457 ANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSV--LNKSQTDMDDTRNAANKTSSPISEV 514
ANL TLELI NDGSP K F LWNP C ++V N + SPI E+
Sbjct: 668 ANLPTLELIHNDGSPSGPKFFALWNPALCSKTVGCFNICFXFL---------CCSPIWEI 718
Query: 515 SYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRR 574
S LFAEM+QHGLRCIAFC+SRKLCELVLSYTREIL+ETAPHLVDSIC YRAGYVA+DRRR
Sbjct: 719 SCLFAEMIQHGLRCIAFCKSRKLCELVLSYTREILQETAPHLVDSICAYRAGYVAQDRRR 778
Query: 575 IERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAV 634
IE DFF GKLCG+AATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLA+
Sbjct: 779 IESDFFSGKLCGIAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAI 838
Query: 635 YVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFG 694
YVAFEGPLDQYFMK+P+KLF+ PIECCH+DAQN +VLEQHLVCAALEHPLSL+YDEKYFG
Sbjct: 839 YVAFEGPLDQYFMKFPQKLFRRPIECCHVDAQNQQVLEQHLVCAALEHPLSLLYDEKYFG 898
Query: 695 SGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN 754
SGL+S IT+L NRGYLS DPS SS++I+ YIGH K+PSH +SIRAIE+E+Y+VID +
Sbjct: 899 SGLNSAITSLTNRGYLSFDPSRGSSSRIWNYIGHAKIPSHAVSIRAIETEKYKVIDKGRD 958
Query: 755 EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIH 814
E+LEEIEESKAFFQVY+GAVYMHQG TYLVKEL++S K+ALCQ+ADLKY+TKTRDYTDIH
Sbjct: 959 ELLEEIEESKAFFQVYDGAVYMHQGKTYLVKELDISRKLALCQQADLKYYTKTRDYTDIH 1018
Query: 815 VSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYE 874
V GG AY +IS+ Q +TTAQ C VTTTWFGF R+W+GS +FDTVEL LP YSY+
Sbjct: 1019 VIGGEIAYQARISRIQFARTTAQVHDCRVTTTWFGFRRIWKGSNKVFDTVELSLPTYSYQ 1078
Query: 875 SQAVWIQVPQSVKAVVE-QNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSR 933
SQAVW++VPQSVK VE FSFR+GLHAASHA+L+VVP+YV CN SDLAPEC NPHD+R
Sbjct: 1079 SQAVWVRVPQSVKTAVEIHRFSFRAGLHAASHAVLNVVPLYVICNSSDLAPECSNPHDTR 1138
Query: 934 YFPERILLYDRHPGGTGVSKQV 955
Y PERILLYD HPGGTG S QV
Sbjct: 1139 YIPERILLYDPHPGGTGFSAQV 1160
>gi|255547101|ref|XP_002514608.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223546212|gb|EEF47714.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 1189
Score = 1353 bits (3501), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 656/957 (68%), Positives = 763/957 (79%), Gaps = 44/957 (4%)
Query: 6 GDNSS----CLCPVWLKKIVEAFAFVSIFSAHLQLRREKVILSHVKGALNQLEKFGVRVG 61
GDN CLCP WLK+ ++AFAF++I SA+LQ+ +E++ +H+K L QL +FG G
Sbjct: 193 GDNGEAEVLCLCPEWLKRTMQAFAFLNILSAYLQMHKEEITSAHLKEVLKQLGRFGFNAG 252
Query: 62 IEDIENLAVLCPKVVQFANDDMESKNHDDSIVIINVSTEERDKVEDNLGSGQKAISLSKI 121
EDIE++++LCPKVV FAN+ E N D++VIIN E+RD+ G+GQKA+SLSKI
Sbjct: 253 FEDIEHISILCPKVVSFANNSTEFVNSADALVIINSELEDRDEFVIP-GNGQKAMSLSKI 311
Query: 122 FNAMKKRERSFKTNLWEAVNLLMCKLQKRV-MSLSVEDLLTYVKERRTDVRGNEVKRARR 180
F M+KRE SFK++LWEA LLM K + M S+EDLL +VK +GNE KR
Sbjct: 312 FTTMRKRESSFKSHLWEAARLLMSKSGNAIAMLFSLEDLLNFVKGGGVSEKGNEAKRESG 371
Query: 181 SQSSTSSSHSFQRRCSDKSQLLPLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDAL 240
SS S +SF+ C + + L+P+EMV+HLR+G+GS G MVHVEDI ARKA+ EIP L
Sbjct: 372 RLSSISRPYSFRTHCHETNHLVPVEMVQHLREGLGSNGHMVHVEDIDARKAIYAEIPHEL 431
Query: 241 LDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLS 300
DNTK ALK GI+KLYSHQA+SIMASLA KNVVV+TMTSSGKSLCYN+PVLE LS +LS
Sbjct: 432 SDNTKLALKCMGITKLYSHQAKSIMASLARKNVVVSTMTSSGKSLCYNVPVLEVLSQNLS 491
Query: 301 SSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPD 360
S ALY+FPTKALAQDQLRALLAM K FD SI+IG+YDGDT+Q +R WLRDNARLLITNPD
Sbjct: 492 SCALYLFPTKALAQDQLRALLAMAKEFDTSINIGIYDGDTSQTERPWLRDNARLLITNPD 551
Query: 361 MLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTAL 420
MLHMSILP+H QFSRILSNLR FVVIDEAH YKGAFGCHTAL
Sbjct: 552 MLHMSILPFHRQFSRILSNLR-------------------FVVIDEAHYYKGAFGCHTAL 592
Query: 421 ILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLW 480
ILRRL R+CSHVYGSDPSF+FSTATSANP EHCMELANLSTL+LI DGSP +KLF LW
Sbjct: 593 ILRRLRRICSHVYGSDPSFIFSTATSANPHEHCMELANLSTLDLINIDGSPSTKKLFALW 652
Query: 481 NPTSC--LRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLC 538
NP C L S + +PISEVSYLFAEM+QHGLRCIAFC+SRKL
Sbjct: 653 NPIVCALLLSFFD-----------------NPISEVSYLFAEMIQHGLRCIAFCKSRKLT 695
Query: 539 ELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGID 598
ELVLSYTREIL++TAPHLV+ IC YR GY E+RR+IER+FF G LCG+AATNALELGID
Sbjct: 696 ELVLSYTREILQKTAPHLVNLICAYRGGYAPEERRKIEREFFSGTLCGIAATNALELGID 755
Query: 599 VGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPI 658
VGHID TLHLGFPGSI+SLWQQAGRSGRRE+PSLAVYVAFEGPLDQYFMK+P+KLF +PI
Sbjct: 756 VGHIDATLHLGFPGSISSLWQQAGRSGRREKPSLAVYVAFEGPLDQYFMKHPKKLFNNPI 815
Query: 659 ECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDS 718
ECCH+DAQN KVLEQHLVCAALEHPL+L +DEKYFGSGLS + +LK++GYLS DPS S
Sbjct: 816 ECCHVDAQNEKVLEQHLVCAALEHPLNLPHDEKYFGSGLSKSLMSLKSKGYLSYDPSCGS 875
Query: 719 SAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQ 778
SA+I+ YIGHEK PSH I IRAIE+ RY VID++ NEVLEEIEESKAFFQVYEGAVYMHQ
Sbjct: 876 SARIWSYIGHEKSPSHGICIRAIEAVRYRVIDVKQNEVLEEIEESKAFFQVYEGAVYMHQ 935
Query: 779 GHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQA 838
G TYLV+EL +S KIALC++ADL+Y+TKTRDYTDIHV GG AY+ ++SK+Q KTTAQA
Sbjct: 936 GKTYLVEELIISEKIALCRRADLQYYTKTRDYTDIHVLGGGIAYSARVSKNQSLKTTAQA 995
Query: 839 LACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRS 898
C VTT WFGFYR+ RG+ I D +L LPKYSYESQAVWIQVPQSVK V++ F FR
Sbjct: 996 NYCKVTTIWFGFYRIERGTKRILDKCDLSLPKYSYESQAVWIQVPQSVKISVQKYFPFRK 1055
Query: 899 GLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
GLHAASHA+L VVP+YV CN+SDLAPECPNPHD+R+FPERIL+YD+HPGGTGVS Q+
Sbjct: 1056 GLHAASHAILKVVPLYVFCNYSDLAPECPNPHDTRFFPERILVYDQHPGGTGVSVQI 1112
>gi|297734102|emb|CBI15349.3| unnamed protein product [Vitis vinifera]
Length = 1188
Score = 1291 bits (3341), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 631/914 (69%), Positives = 732/914 (80%), Gaps = 42/914 (4%)
Query: 48 GALNQLEKFGVRVGIEDIENLAVLCPKVVQFANDDMESKNHDDSIVIINVSTEERDKVED 107
G+ N L +FG +V +EDIE+L+VLCPKV+ D + K + ++ + +
Sbjct: 232 GSKNHLGEFGFQVDMEDIEHLSVLCPKVI----DCISEKFVHEWVISFSFTL-------- 279
Query: 108 NLGS-GQKAISLSKIFNAMKKRERSFKTNLWEAVNLLMCK-LQKRVMSLSVEDLLTYVKE 165
L S QK + +SKI + MKK E FKT+LW AV +LM K + M S+EDLL VKE
Sbjct: 280 GLCSIAQKQVPISKIVSVMKKLESCFKTHLWRAVKVLMRKNGNEMAMLFSLEDLLISVKE 339
Query: 166 RRTDVRGNEVKRARRSQSSTSSSHSFQRRCSDKSQLLPLEMVEHLRKGIGSQGQMVHVED 225
+ K+ARRS S+ SS++S Q +C D + LLP+EMVEHLRKG+G QGQMVHVE+
Sbjct: 340 GG----AGKAKQARRSWSAVSSTNSAQSKCHDTNPLLPMEMVEHLRKGMGCQGQMVHVEE 395
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
I AR A+ VEIPD L +NTKSAL+ G+++LYSHQAESI ASL GKNVVVATMTSSGKSL
Sbjct: 396 ICARMAIRVEIPDELSENTKSALEHIGVTRLYSHQAESIQASLGGKNVVVATMTSSGKSL 455
Query: 286 CYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDR 345
CYN+PVLE LS +L S ALY+FPTKALAQDQLRALLAMTK D S+ +GVYDGDT+++DR
Sbjct: 456 CYNVPVLEVLSQNLLSCALYLFPTKALAQDQLRALLAMTKGSDVSLKMGVYDGDTSEEDR 515
Query: 346 MWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVID 405
MWLRDNARLLITNPDMLHMSILP+HGQF RILSNLR FV+ID
Sbjct: 516 MWLRDNARLLITNPDMLHMSILPFHGQFRRILSNLR-------------------FVIID 556
Query: 406 EAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELI 465
EAHAYKGAFGCHTA ILRRL RLC HVYGSDPSF+F TATSANPR+H MELANL TLELI
Sbjct: 557 EAHAYKGAFGCHTAFILRRLRRLCHHVYGSDPSFIFCTATSANPRDHAMELANLPTLELI 616
Query: 466 QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAAN----KTSSPISEVSYLFAEM 521
NDGSP K F LWNP C ++V +S + + +++A K SSPI E+S LFAEM
Sbjct: 617 HNDGSPSGPKFFALWNPALCSKTVSKRSTSSTNISKSADENVIVKRSSPIWEISCLFAEM 676
Query: 522 VQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFG 581
+QHGLRCIAFC+SRKLCELVLSYTREIL+ETAPHLVDSIC YRAGYVA+DRRRIE DFF
Sbjct: 677 IQHGLRCIAFCKSRKLCELVLSYTREILQETAPHLVDSICAYRAGYVAQDRRRIESDFFS 736
Query: 582 GKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGP 641
GKLCG+AATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLA+YVAFEGP
Sbjct: 737 GKLCGIAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAIYVAFEGP 796
Query: 642 LDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGI 701
LDQYFMK+P+KLF+ PIECCH+DAQN +VLEQHLVCAALEHPLSL+YDEKYFGSGL+S I
Sbjct: 797 LDQYFMKFPQKLFRRPIECCHVDAQNQQVLEQHLVCAALEHPLSLLYDEKYFGSGLNSAI 856
Query: 702 TTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIE 761
T+L NRGYLS DPS SS++I+ YIGH K+PSH +SIRAIE+E+Y+VID +E+LEEIE
Sbjct: 857 TSLTNRGYLSFDPSRGSSSRIWNYIGHAKIPSHAVSIRAIETEKYKVIDKGRDELLEEIE 916
Query: 762 ESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNA 821
ESKAFFQVY+GAVYMHQG TYLVKEL++S K+ALCQ+ADLKY+TKTRDYTDIHV GG A
Sbjct: 917 ESKAFFQVYDGAVYMHQGKTYLVKELDISRKLALCQQADLKYYTKTRDYTDIHVIGGEIA 976
Query: 822 YATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQ 881
Y +IS+ Q +TTAQ C VTTTWFGF R+W+GS +FDTVEL LP YSY+SQAVW++
Sbjct: 977 YQARISRIQFARTTAQVHDCRVTTTWFGFRRIWKGSNKVFDTVELSLPTYSYQSQAVWVR 1036
Query: 882 VPQSVKAVVE-QNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERIL 940
VPQSVK VE FSFR+GLHAASHA+L+VVP+YV CN SDLAPEC NPHD+RY PERIL
Sbjct: 1037 VPQSVKTAVEIHRFSFRAGLHAASHAVLNVVPLYVICNSSDLAPECSNPHDTRYIPERIL 1096
Query: 941 LYDRHPGGTGVSKQ 954
LYD HPGGTG S Q
Sbjct: 1097 LYDPHPGGTGFSAQ 1110
>gi|449441117|ref|XP_004138330.1| PREDICTED: LOW QUALITY PROTEIN: putative ATP-dependent helicase
HRQ1-like [Cucumis sativus]
Length = 1218
Score = 1224 bits (3168), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 614/959 (64%), Positives = 747/959 (77%), Gaps = 45/959 (4%)
Query: 1 MNKSRGDNSSCLCPVWLKKIVEAFAFVSIFSAHLQLRREKVILSHVKGALNQLEKFGVRV 60
+N +RG SSC+CP+WLKKI++AF+F+++FS LQL+ E + +S ++ A +QL+K +
Sbjct: 238 LNSTRG--SSCICPIWLKKIMKAFSFLNVFSMFLQLQEEIMTVSRLEQATDQLQKRRLMF 295
Query: 61 GIEDIENLAVLCPKVVQFANDDMESKNHDDSIVIINVSTEERDKVEDNLGSGQKAISLSK 120
+EDI NL+ LCPK V FA+ +E D I+II + TE+ + ++++ + ++S
Sbjct: 296 CMEDIHNLSRLCPKAVHFASGRLEDTRVDKLIIIIYL-TEKNGRPKEDIDN-----TVSM 349
Query: 121 IFNAMKKRERSFKTNLWEAVNLLMCKL---QKRVMSLSVEDLLTYVKERRTDVRGNEVKR 177
N +K+RERSFK LWEA+ M K ++ + S+E ++T TDV G+E KR
Sbjct: 350 DVNPLKRRERSFKLYLWEAIKCHMLKHGSGREMCVPFSLEAVIT---SNETDVDGSETKR 406
Query: 178 ARRSQSSTSSSHSFQRRCSDKSQLLPLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIP 237
A++S +++SSS S + RC D +LLP +MVEHL K +G +GQ+VH+ DI ARKA VEIP
Sbjct: 407 AKKSDTASSSSQSDRIRCHDTLKLLPEDMVEHLGKSVGPEGQIVHINDILARKANYVEIP 466
Query: 238 DALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSH 297
L ++ SALK G++KLYSHQA SI ASLAGK+V VATMTSSGKSLCYNLPVLEA+S
Sbjct: 467 KELSNSVVSALKCIGVAKLYSHQARSIEASLAGKHVAVATMTSSGKSLCYNLPVLEAMSQ 526
Query: 298 DLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLIT 357
++SS ALY+FPTKALAQDQLR+LL M K F+ +++IGVYDGDT+ DR+ LRDNARLLIT
Sbjct: 527 NVSSCALYLFPTKALAQDQLRSLLVMMKGFNHNLNIGVYDGDTSLADRILLRDNARLLIT 586
Query: 358 NPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCH 417
NPDMLH+SILP+H QF RILSNLR F+VIDEAH YKGAFGCH
Sbjct: 587 NPDMLHVSILPHHRQFGRILSNLR-------------------FIVIDEAHTYKGAFGCH 627
Query: 418 TALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLF 477
TALILRRL RLCSHVYGSDPSF+F TATSANPREHCMEL NLS+LELI NDGSP A+KLF
Sbjct: 628 TALILRRLRRLCSHVYGSDPSFIFCTATSANPREHCMELGNLSSLELIDNDGSPSARKLF 687
Query: 478 VLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKL 537
+LWNP L L+ M+ PI +++ LFAEMVQHGLRCIAFC++RKL
Sbjct: 688 LLWNPVMVLFVGLSTXIFTMN-----------PIMDIARLFAEMVQHGLRCIAFCKTRKL 736
Query: 538 CELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGI 597
CELVL YTREIL+E+APHLV S+C YRAGY AEDRRRIE DFFGG LCGVAATNALELGI
Sbjct: 737 CELVLCYTREILKESAPHLVQSVCAYRAGYTAEDRRRIESDFFGGNLCGVAATNALELGI 796
Query: 598 DVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSP 657
DVGHID TLHLGFPGSIASLWQQAGR+GRRE+ SL+VYVAFEGPLDQYFMK+PEKLF SP
Sbjct: 797 DVGHIDATLHLGFPGSIASLWQQAGRAGRREKTSLSVYVAFEGPLDQYFMKHPEKLFGSP 856
Query: 658 IECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLD 717
IECCHIDA+N +VLEQHL+CAA EHP+ L YD+K+FG GL++ + +LKNRG L +PS
Sbjct: 857 IECCHIDAENQQVLEQHLLCAAYEHPVCLAYDQKFFGPGLNNALMSLKNRGDLIPEPSCG 916
Query: 718 SSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMH 777
SS I+ YIG +KMPS ++SIRAIE+ERY+V+D + NEVLEEIEESKAFFQVYEGAVYMH
Sbjct: 917 SSKSIWNYIGQKKMPSCSVSIRAIEAERYKVVDQRRNEVLEEIEESKAFFQVYEGAVYMH 976
Query: 778 QGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQ 837
QG TYLVK LNLS+ +A C++ADLKY+TKTRDYTDIHV GGN AY + +KTTAQ
Sbjct: 977 QGRTYLVKSLNLSTMLAFCEEADLKYYTKTRDYTDIHVIGGNLAYPRRAPNIPPSKTTAQ 1036
Query: 838 ALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVE-QNFSF 896
A C VTTTWFGFYR+ +GS I D+V+L LPKYSY SQAVWI VPQSVK V+ +NF+F
Sbjct: 1037 ANDCRVTTTWFGFYRIQKGSNQILDSVDLSLPKYSYNSQAVWIPVPQSVKEEVKRKNFNF 1096
Query: 897 RSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
R+GLH ASHALL+VVP+ + CN SDLAPEC NPHD+RYFPERILLYD+HPGGTG+S Q+
Sbjct: 1097 RAGLHGASHALLNVVPLRIICNMSDLAPECANPHDTRYFPERILLYDQHPGGTGMSLQI 1155
>gi|334187508|ref|NP_196428.2| UBQ, helicase-c and DEAD-like helicase domain-containing protein
[Arabidopsis thaliana]
gi|332003865|gb|AED91248.1| UBQ, helicase-c and DEAD-like helicase domain-containing protein
[Arabidopsis thaliana]
Length = 1141
Score = 1126 bits (2913), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 571/921 (61%), Positives = 693/921 (75%), Gaps = 45/921 (4%)
Query: 49 ALNQLEKFGVRVGIEDIENLAVLCPKVVQFANDDMESKNHDDSIVIINVSTEERDKVEDN 108
+L++L GVRV I+D++NL+V+CPKV+ DD E+ N++++IVI D +E +
Sbjct: 197 SLSRLAMSGVRVRIQDVKNLSVICPKVI---TDDYEAVNYENAIVIA-------DYLEMD 246
Query: 109 LGSGQKAISLSKIFNAMKKRERSFKTNLWEAVNLLMCK-LQKRVMSLSVEDLLTYVKERR 167
SG+K I L+K+F+AMKKRE SFK++ WE++ L+ K + +++S+E LL + E R
Sbjct: 247 EKSGRKKIPLAKLFSAMKKREASFKSDFWESIRSLLNKNTGESGIAISLEGLLKFASEGR 306
Query: 168 TDVRGNEVKRARRSQSSTSSSHSFQRRCSDKSQLLPLEMVEHLRKGIGSQGQMVHVEDIS 227
D GNE ++A + TS S FQ C + LLP EMVEHLR GIGS+GQ+VHVE I
Sbjct: 307 AD-GGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGIGSKGQVVHVEVIK 365
Query: 228 ARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCY 287
ARK+ VE+ D L + TKSALK G++ LYSHQAE+I A+LAGKNV VATMTSSGKSLCY
Sbjct: 366 ARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAGKNVAVATMTSSGKSLCY 425
Query: 288 NLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMW 347
N+PV E L D +S ALY+FPTKALAQDQLRAL + K F+ASI++GVYDGDT KDR
Sbjct: 426 NVPVFEELCKDTNSCALYLFPTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTR 485
Query: 348 LRDNARLLITNPDMLHMSILPYHG-QFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDE 406
LR NARLLITNPDMLH+SIL H QFSRILSNLR ++VIDE
Sbjct: 486 LRSNARLLITNPDMLHISILRRHKEQFSRILSNLR-------------------YIVIDE 526
Query: 407 AHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQ 466
AH YKG FGCH ALILRRL RLCSHVYG +PSF+F TATSANPREHCMELANLS LEL+
Sbjct: 527 AHIYKGPFGCHMALILRRLRRLCSHVYGVNPSFIFCTATSANPREHCMELANLSELELVT 586
Query: 467 NDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSS--------PISEVSYLF 518
DGSP ++KLFVLWNP++ S KS + + AA+K S P SEVS+LF
Sbjct: 587 IDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVSSSEAAADKPSGAAVDTLSGPASEVSHLF 646
Query: 519 AEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERD 578
AEMVQHGLRCIAFC SRKLCELVL TREIL ETAPHLV++I YR GY+AEDRR+IE D
Sbjct: 647 AEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESD 706
Query: 579 FFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAF 638
FGGKLCG+AATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRR++PSLAVYVAF
Sbjct: 707 LFGGKLCGIAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRQKPSLAVYVAF 766
Query: 639 EGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLS 698
GPLDQY+M +P+KLF SPIECCHID+QN VL QHL CAALEHPLSL YD+++FGSGLS
Sbjct: 767 LGPLDQYYMSFPDKLFGSPIECCHIDSQNKHVLMQHLACAALEHPLSLQYDQQHFGSGLS 826
Query: 699 SGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLE 758
+ L+N+G+LS DPS DSS++I+ YIG EK P+ +SIRAIE+ RY V++ +S +VL+
Sbjct: 827 DPLAELRNKGFLSFDPSRDSSSRIWNYIGREKNPARIVSIRAIETVRYRVMEKKSKDVLD 886
Query: 759 EIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGG 818
EIEESKAFF VYEGA+YM+QG YLV L++ K+ALC+ ++ Y+T+TRDYTDI V+GG
Sbjct: 887 EIEESKAFFHVYEGAIYMNQGRNYLVTSLDIKEKVALCELVNVDYYTRTRDYTDIKVTGG 946
Query: 819 NNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAV 878
+ AY K K K T Q AC VTT WFGF R+ R + + D VEL LP Y+Y+SQAV
Sbjct: 947 DTAYPVKAPK----KPTPQTHACRVTTKWFGFLRIRRRNNEVIDDVELSLPSYTYQSQAV 1002
Query: 879 WIQVPQSVKAVVEQ-NFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPE 937
WIQVP SVK VE N FR+GLHAA HAL++VVP V CN+SD+APECPNP + RYFP
Sbjct: 1003 WIQVPMSVKLAVETANLPFRAGLHAACHALVNVVPTRVTCNYSDIAPECPNPQEQRYFPA 1062
Query: 938 RILLYDRHPGGTGVSKQVTDM 958
RIL+YDRHPGGTG+S ++ +
Sbjct: 1063 RILVYDRHPGGTGISAKICPL 1083
>gi|357116420|ref|XP_003559979.1| PREDICTED: putative ATP-dependent helicase HRQ1-like [Brachypodium
distachyon]
Length = 1015
Score = 1014 bits (2621), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/763 (64%), Positives = 587/763 (76%), Gaps = 28/763 (3%)
Query: 195 CSDKSQLLPLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGIS 254
C DK L P MV+HL KG+G +GQ+VH+E+I R A E+P L + + AL+S GIS
Sbjct: 208 CHDKHPLGPAGMVQHLEKGLGKEGQIVHIEEIPCRGASYAELPSHLSEAMREALESIGIS 267
Query: 255 KLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQ 314
+LYSHQ+E+I +S++GK+VVVAT T+SGKSLCYN+PVLE+LS D + ALY+FPTKALAQ
Sbjct: 268 RLYSHQSEAIQSSISGKHVVVATSTASGKSLCYNIPVLESLSQDSMACALYIFPTKALAQ 327
Query: 315 DQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFS 374
DQLR+L+ M AF ID +YDGDT + DR+W+RDNARLLITNPDMLH+S+LP H QF
Sbjct: 328 DQLRSLVEMKNAFHTDIDAKIYDGDTPRADRLWIRDNARLLITNPDMLHVSVLPCHAQFQ 387
Query: 375 RILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYG 434
RILSNLR ++VIDEAH+YKGAFGCHTALILRRL R+CS+VYG
Sbjct: 388 RILSNLR-------------------YIVIDEAHSYKGAFGCHTALILRRLKRICSNVYG 428
Query: 435 SDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQ 494
S P+F+F TATSA+PREH MELA L ELIQNDGSPC K F+LWNP LR
Sbjct: 429 SHPTFLFCTATSASPREHVMELAKLDNAELIQNDGSPCGSKFFLLWNPP--LRM-----P 481
Query: 495 TDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAP 554
+ D ++ + SSPI EVSYLF+EMVQHGLRCIAFC++RKLCELVLSYTREIL+ETA
Sbjct: 482 KEGDSKGSSVIRRSSPIVEVSYLFSEMVQHGLRCIAFCKTRKLCELVLSYTREILQETAK 541
Query: 555 HLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSI 614
LVDSICVYRAGY+AEDRR+IE D F GKL GVAATNALELGIDVGHID TLHLGFPGS+
Sbjct: 542 ELVDSICVYRAGYIAEDRRKIETDLFEGKLRGVAATNALELGIDVGHIDATLHLGFPGSV 601
Query: 615 ASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQH 674
ASLWQQAGRSGRR + SLA+YVAFEGPLDQYFMK+P KLF PIE C +D+ N KVLEQH
Sbjct: 602 ASLWQQAGRSGRRAKQSLAIYVAFEGPLDQYFMKFPHKLFGKPIEHCQVDSHNPKVLEQH 661
Query: 675 LVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSH 734
L CAA EHP+ L YDE +FGS L S +TTLK +GYL ++PS S+ ++ Y+G EK PS
Sbjct: 662 LACAAFEHPICLQYDENHFGSNLHSVMTTLKEKGYLINNPSGPFSSTMWNYVGPEKRPSQ 721
Query: 735 TISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIA 794
+SIRAIE ++Y VID +N +LEEIEESKAFFQVYEGAVYM+QG YLV+EL+L S+ A
Sbjct: 722 MVSIRAIEHDKYSVIDRLNNRLLEEIEESKAFFQVYEGAVYMNQGANYLVEELDLPSRTA 781
Query: 795 LCQKADLKYFTKTRDYTDIHVSGGNNAY-ATKISKDQLTKTTAQALACTVTTTWFGFYRL 853
C+KADLKY+TKTRDYTDI+V G+ AY T I K KTTAQA C VTT WFGFYR+
Sbjct: 782 FCRKADLKYYTKTRDYTDINVLRGDFAYLPTGICKTSCLKTTAQANDCKVTTKWFGFYRI 841
Query: 854 WRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQ-NFSFRSGLHAASHALLHVVP 912
+ S I D++EL LP YSY S+AVWI++P S K VE+ FR G HAASHALL++VP
Sbjct: 842 CKSSNKISDSIELSLPPYSYNSEAVWIRIPHSAKITVEERKLDFRGGSHAASHALLNIVP 901
Query: 913 IYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
+++ C+ SDL EC NPH++R PERILLYD+HPGG G++ QV
Sbjct: 902 LHMMCSASDLGTECVNPHETRGMPERILLYDKHPGGIGIASQV 944
>gi|218199989|gb|EEC82416.1| hypothetical protein OsI_26803 [Oryza sativa Indica Group]
Length = 1049
Score = 1004 bits (2595), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/776 (61%), Positives = 587/776 (75%), Gaps = 28/776 (3%)
Query: 185 TSSSHSFQRRCSDKSQLLPLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNT 244
+S + S C L P EMV+HL++G+G +GQ+VH+E+I R A E+P+ L +
Sbjct: 230 SSIARSAATSCHGTCHLGPAEMVDHLKQGLGKEGQIVHIEEIPCRAASFAELPNHLSEAM 289
Query: 245 KSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSAL 304
+ ALKS G+S+LYSHQ+ +I +S+AG++V +AT TSSGKSLCYN+PVLE+L +L + AL
Sbjct: 290 REALKSIGVSRLYSHQSRAIHSSIAGRHVAIATSTSSGKSLCYNIPVLESLCQNLMACAL 349
Query: 305 YMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHM 364
Y+FPTKALAQDQLR+LL M A ID+ +YDGDT ++DR W+RDNARLLITNPDMLHM
Sbjct: 350 YIFPTKALAQDQLRSLLEMKNALHTDIDVNIYDGDTPREDRTWIRDNARLLITNPDMLHM 409
Query: 365 SILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRR 424
SILP H QF RILSNLR ++VIDEAH+YKGAFGCHTALILRR
Sbjct: 410 SILPCHAQFQRILSNLR-------------------YIVIDEAHSYKGAFGCHTALILRR 450
Query: 425 LCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTS 484
L R+CS++YGS P+F+F TATSANPREH MELA L +ELI+NDGSPC K F+LWNP
Sbjct: 451 LKRICSNIYGSHPTFIFCTATSANPREHVMELAKLDNVELIENDGSPCGSKYFLLWNPP- 509
Query: 485 CLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSY 544
L S D TR SSPI EVSYL +EMVQHGLRCIAFC++RKLCELVL+Y
Sbjct: 510 -LHMTKEGSSKDSLLTRR-----SSPIVEVSYLLSEMVQHGLRCIAFCKTRKLCELVLAY 563
Query: 545 TREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDV 604
TREIL+ETA LVD+ICVYRAGY+AEDRR+IE + F GKL GVAATNALELGIDVGHID
Sbjct: 564 TREILQETAKELVDTICVYRAGYIAEDRRKIEANLFQGKLLGVAATNALELGIDVGHIDA 623
Query: 605 TLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHID 664
TLHLGFPGSIASLWQQAGRSGRR + SLA+YVAFEGPLDQYFMK+P KLF PIE C +D
Sbjct: 624 TLHLGFPGSIASLWQQAGRSGRRAKQSLAIYVAFEGPLDQYFMKFPHKLFGKPIEHCQVD 683
Query: 665 AQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFE 724
+ N K+LEQHL CAA EHPL + YD YF S L+S + LK++G L ++PS S+ ++
Sbjct: 684 SHNQKLLEQHLACAAYEHPLCVQYDADYFCSSLNSVMMALKDKGCLINNPSGPFSSSMWS 743
Query: 725 YIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLV 784
YIG EK PS +SIRAIE ++Y VID +N +LEEIEESKAFFQVY+GAVYMHQG YLV
Sbjct: 744 YIGPEKRPSQAVSIRAIEHDKYRVIDKLNNRLLEEIEESKAFFQVYDGAVYMHQGVNYLV 803
Query: 785 KELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAY-ATKISKDQLTKTTAQALACTV 843
+EL+LSS+ A C+KADLKY+TKTRDYTDI+V GG A+ K KTTAQA C V
Sbjct: 804 EELDLSSRTAFCRKADLKYYTKTRDYTDINVLGGEFAHLPPSTCKTNGVKTTAQANDCKV 863
Query: 844 TTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQ-NFSFRSGLHA 902
TT WFGFYR+W+ + I D++EL LP YS+ SQAVW+++P SVK VE+ FR G HA
Sbjct: 864 TTKWFGFYRIWKSNNKISDSIELNLPPYSFNSQAVWVRIPHSVKTNVEERKLQFRGGSHA 923
Query: 903 ASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDM 958
ASHALL++VP+++ CN SDL EC NPH++R P+RILLYD+HPGG G++ Q+ +
Sbjct: 924 ASHALLNIVPLHMTCNASDLGTECANPHETRGIPDRILLYDKHPGGIGIALQIKSL 979
>gi|222637423|gb|EEE67555.1| hypothetical protein OsJ_25054 [Oryza sativa Japonica Group]
Length = 1015
Score = 941 bits (2432), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/775 (59%), Positives = 562/775 (72%), Gaps = 60/775 (7%)
Query: 185 TSSSHSFQRRCSDKSQLLPLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNT 244
+S + S C L P EMV+HL++G+G +GQ+VH+E+I R A E+P+ L + T
Sbjct: 230 SSIARSAATSCHGTCHLGPAEMVDHLKQGLGKEGQIVHIEEIPCRAASFAELPNHLSEAT 289
Query: 245 KSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSAL 304
+ ALKS G+S+LYSHQ+ +I +S+AG++V +AT TSSGKSLCYN+PVLE+L +L + AL
Sbjct: 290 REALKSIGVSRLYSHQSRAIHSSIAGRHVAIATSTSSGKSLCYNIPVLESLCQNLMACAL 349
Query: 305 YMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHM 364
Y+FPTKALAQDQLR+LL M A ID+ +YDGDT ++DR W+RDNARLLITNPDMLHM
Sbjct: 350 YIFPTKALAQDQLRSLLEMKNALHTDIDVNIYDGDTPREDRTWIRDNARLLITNPDMLHM 409
Query: 365 SILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRR 424
SILP HGQF RILSNLR ++VIDEAH+YKGAFGCHTALILRR
Sbjct: 410 SILPCHGQFQRILSNLR-------------------YIVIDEAHSYKGAFGCHTALILRR 450
Query: 425 LCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTS 484
L R+CS++YGS P+F+F TATSANPREH MELA L +ELI+NDGSPC K F+LWNP
Sbjct: 451 LKRICSNIYGSHPTFIFCTATSANPREHVMELAKLDNVELIENDGSPCGFKYFLLWNPP- 509
Query: 485 CLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSY 544
L S D TR SSPI EVSYL +EMVQHGLRCIAFC++RKLCELVL+Y
Sbjct: 510 -LHMTKEGSSKDSLLTRR-----SSPIVEVSYLLSEMVQHGLRCIAFCKTRKLCELVLAY 563
Query: 545 TREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDV 604
TREIL+ETA LVD+ICVYRAGY+AEDRR+IE + F GKL GVAATNALELGIDVGHID
Sbjct: 564 TREILQETAKELVDTICVYRAGYIAEDRRKIEANLFQGKLLGVAATNALELGIDVGHIDA 623
Query: 605 TLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHID 664
TLHLGFPGSIASLWQQAGRSGRR + SLA+YVAFEGPLDQYFMK+P KLF PIE C +D
Sbjct: 624 TLHLGFPGSIASLWQQAGRSGRRAKQSLAIYVAFEGPLDQYFMKFPHKLFGKPIEHCQVD 683
Query: 665 AQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFE 724
+ N K+LEQHL CAA EHPL + YD YF S L+S + LK++G L ++PS S+ ++
Sbjct: 684 SHNQKLLEQHLACAAYEHPLCVQYDADYFCSSLNSVMMALKDKGCLINNPSGPFSSSMWS 743
Query: 725 YIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLV 784
Y+G EK PS +SIRAIE ++Y VID +N +LEEIEESKAFFQVY+GAVYMHQG YLV
Sbjct: 744 YVGPEKRPSQAVSIRAIEHDKYRVIDKLNNRLLEEIEESKAFFQVYDGAVYMHQGVNYLV 803
Query: 785 KELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAY-ATKISKDQLTKTTAQALACTV 843
+EL+LSS+ A C+KADLKY+TKTRDYTDI+V GG A+ + K KTTAQA C V
Sbjct: 804 EELDLSSRTAFCRKADLKYYTKTRDYTDINVLGGEFAHLPPSMCKTNGVKTTAQANDCKV 863
Query: 844 TTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAA 903
TT WFGFYR+W+ + I D++EL LP YS+ SQ +
Sbjct: 864 TTKWFGFYRIWKSNNKISDSIELNLPPYSFNSQYLC------------------------ 899
Query: 904 SHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDM 958
++ CN SDL EC NPH++R P+RILLYD+HPGG G++ Q+ +
Sbjct: 900 ---------RHMTCNASDLGTECANPHETRGIPDRILLYDKHPGGIGIALQIKSL 945
>gi|414887527|tpg|DAA63541.1| TPA: hypothetical protein ZEAMMB73_114601 [Zea mays]
Length = 873
Score = 917 bits (2370), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/688 (64%), Positives = 538/688 (78%), Gaps = 28/688 (4%)
Query: 195 CSDKSQLLPLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGIS 254
C D L P EMVEHL++G+G +GQ+VH+++IS+R+A E+P L + + ALKS GIS
Sbjct: 211 CHDMQPLKPAEMVEHLKQGLGKEGQIVHIQEISSREASFTELPCNLSEAMREALKSIGIS 270
Query: 255 KLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQ 314
+LYSHQ+++I +S++G+++VVAT TSSGKSLCYN+PVLE LS DL + ALY+FP KALAQ
Sbjct: 271 RLYSHQSQAITSSISGRHIVVATSTSSGKSLCYNIPVLECLSQDLMACALYIFPMKALAQ 330
Query: 315 DQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFS 374
DQLR L+ + A +D+ +YDGDT ++DR+W+RDNARLLITNPDMLH+SILPYHGQF
Sbjct: 331 DQLRTLIKLKNASHIDVDVKIYDGDTPREDRLWIRDNARLLITNPDMLHVSILPYHGQFQ 390
Query: 375 RILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYG 434
RILSNLR ++VIDEAH+YKGAFGCHTALI+RRL R+CS+VYG
Sbjct: 391 RILSNLR-------------------YIVIDEAHSYKGAFGCHTALIIRRLKRICSNVYG 431
Query: 435 SDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQ 494
S P+F+F TATSANP EH MELANL +ELIQNDGSPC K F+LWNP+ + +K+
Sbjct: 432 SCPTFIFCTATSANPCEHVMELANLDEVELIQNDGSPCGSKYFLLWNPSLPMTEGRSKA- 490
Query: 495 TDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAP 554
++ ++ SS I EVSYLF+EMVQHGLRCIAFC+SRKLCELVL+YTREIL+ETA
Sbjct: 491 -------SSVHRRSSSIVEVSYLFSEMVQHGLRCIAFCKSRKLCELVLAYTREILQETAK 543
Query: 555 HLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSI 614
LVDSICVYRAGY+AEDRR+IE D FGGKL GVAATNALELGIDVGHID TLHLGFPGSI
Sbjct: 544 ELVDSICVYRAGYIAEDRRKIEADLFGGKLHGVAATNALELGIDVGHIDATLHLGFPGSI 603
Query: 615 ASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQH 674
ASLWQQAGRSGRR + SLA+YVAFEGPLDQYFMK+P KLF IE C +D+ N KVLEQH
Sbjct: 604 ASLWQQAGRSGRRAKQSLAIYVAFEGPLDQYFMKFPHKLFGRSIEHCQVDSHNLKVLEQH 663
Query: 675 LVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSH 734
L CAA EHPL + YDE YFGS L S +TTLK++GY+ ++ + S+ ++ YIG EK PS
Sbjct: 664 LPCAAYEHPLCVQYDECYFGSSLDSVMTTLKDKGYIINNRAGPFSSSMWNYIGPEKSPSQ 723
Query: 735 TISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIA 794
+SIRAIE +RY+VID ++ +LEEIEESKAFFQVYEGAVYMHQG YLV+EL+L+S+ A
Sbjct: 724 AVSIRAIEQDRYKVIDKLNSRLLEEIEESKAFFQVYEGAVYMHQGANYLVEELDLASRTA 783
Query: 795 LCQKADLKYFTKTRDYTDIHVSGGNNAY-ATKISKDQLTKTTAQALACTVTTTWFGFYRL 853
C+KADLKY+TKTRDYTDI+V GG AY T I + KTTAQA CTVTT WFGFYR+
Sbjct: 784 FCRKADLKYYTKTRDYTDINVLGGEFAYLPTSICRTNRVKTTAQANDCTVTTKWFGFYRI 843
Query: 854 WRGSGIIFDTVELYLPKYSYESQAVWIQ 881
+ S I D+ EL LP YS+ SQA +Q
Sbjct: 844 SKSSNTISDSFELNLPPYSFTSQAYDVQ 871
>gi|115443755|ref|NP_001045657.1| Os02g0111900 [Oryza sativa Japonica Group]
gi|41052756|dbj|BAD07625.1| putative ATP-dependent RNA helicase [Oryza sativa Japonica Group]
gi|41052938|dbj|BAD07849.1| putative ATP-dependent RNA helicase [Oryza sativa Japonica Group]
gi|113535188|dbj|BAF07571.1| Os02g0111900 [Oryza sativa Japonica Group]
gi|125580539|gb|EAZ21470.1| hypothetical protein OsJ_05077 [Oryza sativa Japonica Group]
Length = 927
Score = 896 bits (2315), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/763 (56%), Positives = 557/763 (73%), Gaps = 37/763 (4%)
Query: 195 CSDKSQLLPLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGIS 254
C L P +MVEHLR+G+G GQ+ HVE+I R+A E+P L + + AL+S G++
Sbjct: 127 CHGTQPLDPTQMVEHLRQGLGKAGQITHVEEIPGREATFAELPGHLSSSMRDALRSIGVT 186
Query: 255 KLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQ 314
KLY+HQA+++ ++++G++VVV+T TSSGKSLCYN+PVLE++S + ALY+FPTKALAQ
Sbjct: 187 KLYAHQAQAVQSAVSGEHVVVSTSTSSGKSLCYNIPVLESISQSSAPCALYIFPTKALAQ 246
Query: 315 DQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFS 374
DQL+ LL M AF + D+ +YDGDT KDR +R+ ARLLITNPDMLHMSILP H QF
Sbjct: 247 DQLKTLLEMKPAFRSDFDVSIYDGDTAMKDRTRIRNTARLLITNPDMLHMSILPCHAQFK 306
Query: 375 RILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYG 434
R+L NL+ ++VIDEAH+YKGAFGCH ALILRRL R+CS+VYG
Sbjct: 307 RVLFNLK-------------------YIVIDEAHSYKGAFGCHAALILRRLKRICSYVYG 347
Query: 435 SDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQ 494
S+P+F+F TAT ANPREH MELANL + L+ ND SPC K F+LWNP L
Sbjct: 348 SNPTFIFCTATLANPREHVMELANLDRVVLVDNDTSPCGSKNFLLWNPPLQLA------- 400
Query: 495 TDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAP 554
A ++ +P+ EVSYLFAEMVQHGLR IAFC++RK+CE VL TR+IL+ETA
Sbjct: 401 -------KAEDRRPNPVLEVSYLFAEMVQHGLRAIAFCKTRKMCEQVLMQTRQILKETAA 453
Query: 555 HLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSI 614
LV+SICVYR GYVA DRR+IE D FGG L GVAATNALELGIDVGHID TLHLGFPGS+
Sbjct: 454 ELVNSICVYRGGYVASDRRKIEADLFGGILRGVAATNALELGIDVGHIDATLHLGFPGSM 513
Query: 615 ASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQH 674
AS WQQAGRSGRR + S+AVYVAFEG LDQYFM+ P KLF PIE C +D+QN KVLEQH
Sbjct: 514 ASFWQQAGRSGRRAKQSIAVYVAFEGALDQYFMRSPHKLFGKPIEHCQVDSQNRKVLEQH 573
Query: 675 LVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSH 734
L CAA E+PL +DE YFG ++S + TLK++G L ++PS S +++YIG +K PSH
Sbjct: 574 LACAASEYPLRQEHDESYFGFSMNSVLMTLKDKGCLMNNPSGGDSG-VWKYIGPDKKPSH 632
Query: 735 TISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIA 794
++SIRAIE RY+VID +SN VLEEIEESKAFFQVY+GAVYMHQG +YLV +L+L+S+IA
Sbjct: 633 SVSIRAIEHHRYKVIDRRSNRVLEEIEESKAFFQVYDGAVYMHQGVSYLVDKLDLTSRIA 692
Query: 795 LCQKADLKYFTKTRDYTDIHVSGGN-NAYATKISKDQLTKTTAQALACTVTTTWFGFYRL 853
C+ DL Y+TK +DYT+I GG+ + + K + +TTAQA C VTT W GF R+
Sbjct: 693 YCKVFDLNYYTKVQDYTEISFIGGDVDEHPASECKPDIRRTTAQANDCRVTTKWVGFDRI 752
Query: 854 WRGSGIIFDTVEL-YLPKYSYESQAVWIQVPQSVKAVVEQ-NFSFRSGLHAASHALLHVV 911
+ + D++ L +LP YS+E+QAVW+Q+P SV+ +EQ + G+HAASHALL ++
Sbjct: 753 LKSNNQKSDSINLDHLPPYSFETQAVWVQIPVSVRTTMEQMEYQLCGGVHAASHALLSII 812
Query: 912 PIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
P+++ C+ SDL +C P ++ +RILLYD+HPGG G++ Q
Sbjct: 813 PLHMMCSGSDLGTQCAEPQENSETADRILLYDKHPGGIGLASQ 855
>gi|125537776|gb|EAY84171.1| hypothetical protein OsI_05550 [Oryza sativa Indica Group]
Length = 927
Score = 895 bits (2314), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/763 (56%), Positives = 557/763 (73%), Gaps = 37/763 (4%)
Query: 195 CSDKSQLLPLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGIS 254
C L P +MVEHLR+G+G GQ+ HVE+I R+A E+P L + + AL+S G++
Sbjct: 127 CHGTQPLDPTQMVEHLRQGLGKAGQITHVEEIPGREATFAELPGHLSSSMRDALRSIGVT 186
Query: 255 KLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQ 314
KLY+HQA+++ ++++G++VVV+T TSSGKSLCYN+PVLE++S + ALY+FPTKALAQ
Sbjct: 187 KLYAHQAQAVQSAVSGEHVVVSTSTSSGKSLCYNIPVLESISQSSAPCALYIFPTKALAQ 246
Query: 315 DQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFS 374
DQL+ LL M AF + D+ +YDGDT KDR +R+ ARLLITNPDMLHMSILP H QF
Sbjct: 247 DQLKTLLEMKPAFRSDFDVSIYDGDTAMKDRTRIRNTARLLITNPDMLHMSILPCHAQFK 306
Query: 375 RILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYG 434
R+L NL+ ++VIDEAH+YKGAFGCH ALILRRL R+CS+VYG
Sbjct: 307 RVLFNLK-------------------YIVIDEAHSYKGAFGCHAALILRRLKRICSYVYG 347
Query: 435 SDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQ 494
S+P+F+F TAT ANPREH MELANL + L+ ND SPC K F+LWNP L
Sbjct: 348 SNPTFIFCTATLANPREHVMELANLDRVVLVDNDTSPCGSKNFLLWNPPLQLA------- 400
Query: 495 TDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAP 554
A ++ +P+ EVSYLFAEMVQHGLR IAFC++RK+CE VL TR+IL+ETA
Sbjct: 401 -------KAEDRRPNPVLEVSYLFAEMVQHGLRAIAFCKTRKMCEQVLMQTRQILKETAA 453
Query: 555 HLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSI 614
LV+SICVYR GYVA DRR+IE D FGG L GVAATNALELGIDVGHID TLHLGFPGS+
Sbjct: 454 ELVNSICVYRGGYVASDRRKIEADLFGGILRGVAATNALELGIDVGHIDATLHLGFPGSM 513
Query: 615 ASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQH 674
AS WQQAGRSGRR + S+AVYVAFEG LDQYFM+ P KLF PIE C +D+QN KVLEQH
Sbjct: 514 ASFWQQAGRSGRRAKQSIAVYVAFEGALDQYFMRSPHKLFGKPIEHCQVDSQNRKVLEQH 573
Query: 675 LVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSH 734
L CAA E+PL +DE YFG ++S + TLK++G L ++PS S +++YIG +K PSH
Sbjct: 574 LACAASEYPLRQEHDESYFGFSMNSVLMTLKDKGCLMNNPSGGDSG-VWKYIGPDKKPSH 632
Query: 735 TISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIA 794
++SIRAIE RY+VID +SN VLEEIEESKAFFQVY+GAVYMHQG +YLV +L+L+S+IA
Sbjct: 633 SVSIRAIEHHRYKVIDRRSNRVLEEIEESKAFFQVYDGAVYMHQGVSYLVDKLDLTSRIA 692
Query: 795 LCQKADLKYFTKTRDYTDIHVSGGN-NAYATKISKDQLTKTTAQALACTVTTTWFGFYRL 853
C+ DL Y+TK +DYT+I GG+ + + K + +TTAQA C VTT W GF R+
Sbjct: 693 YCKVFDLNYYTKVQDYTEISFIGGDVDEHPASECKPDIRRTTAQANDCRVTTKWVGFDRI 752
Query: 854 WRGSGIIFDTVEL-YLPKYSYESQAVWIQVPQSVKAVVEQ-NFSFRSGLHAASHALLHVV 911
+ + D++ L +LP YS+E+QAVW+Q+P SV+ +EQ + G+HAASHALL ++
Sbjct: 753 LKSNNQKSDSISLNHLPPYSFETQAVWVQIPVSVRTTMEQMEYQLCGGVHAASHALLSII 812
Query: 912 PIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
P+++ C+ SDL +C P ++ +RILLYD+HPGG G++ Q
Sbjct: 813 PLHMMCSGSDLGTQCAEPQENSETADRILLYDKHPGGIGLASQ 855
>gi|449477494|ref|XP_004155039.1| PREDICTED: LOW QUALITY PROTEIN: putative ATP-dependent helicase
HRQ1-like [Cucumis sativus]
Length = 663
Score = 874 bits (2259), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/604 (70%), Positives = 491/604 (81%), Gaps = 30/604 (4%)
Query: 260 QAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRA 319
+A SI ASLAGK+V VATMTSSGKSLCYNLPVLEA+S ++SS ALY+FPTKALAQDQLR+
Sbjct: 69 KARSIEASLAGKHVAVATMTSSGKSLCYNLPVLEAMSQNVSSCALYLFPTKALAQDQLRS 128
Query: 320 LLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSN 379
LL M K F+ +++IGVYDGDT+ DR+ LRDNARLLITNPDMLH+SILP+H QF RILSN
Sbjct: 129 LLVMMKGFNHNLNIGVYDGDTSLADRILLRDNARLLITNPDMLHVSILPHHRQFGRILSN 188
Query: 380 LRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSF 439
LR F+VIDEAH YKGAFGCHTALILRRL RLCSHVYGSDPSF
Sbjct: 189 LR-------------------FIVIDEAHTYKGAFGCHTALILRRLRRLCSHVYGSDPSF 229
Query: 440 VFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDD 499
+F TATSANPREHCMEL NLS+LELI NDGSP A+KLF+LWNP L L+ M+
Sbjct: 230 IFCTATSANPREHCMELGNLSSLELIDNDGSPSARKLFLLWNPVMVLFVGLSTXIFTMN- 288
Query: 500 TRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDS 559
PI +++ LFAEMVQHGLRCIAFC++RKLCELVL YTREIL+E+APHLV S
Sbjct: 289 ----------PIMDIARLFAEMVQHGLRCIAFCKTRKLCELVLCYTREILKESAPHLVQS 338
Query: 560 ICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQ 619
+C YRAGY AEDRRRIE DFFGG LCGVAATNALELGIDVGHID TLHLGFPGSIASLWQ
Sbjct: 339 VCAYRAGYTAEDRRRIESDFFGGNLCGVAATNALELGIDVGHIDATLHLGFPGSIASLWQ 398
Query: 620 QAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAA 679
QAGR+GRRE+ SL+VYVAFEGPLDQYFMK+PEKLF SPIECCHIDA+N +VLEQHL+CAA
Sbjct: 399 QAGRAGRREKTSLSVYVAFEGPLDQYFMKHPEKLFGSPIECCHIDAENQQVLEQHLLCAA 458
Query: 680 LEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIR 739
EHP+ L YD+ +FG GL++ + +LKNRG L +PS SS I+ YIG +KMPS ++SIR
Sbjct: 459 YEHPVCLAYDQNFFGPGLNNALMSLKNRGDLIPEPSCGSSKSIWNYIGQKKMPSCSVSIR 518
Query: 740 AIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKA 799
AIE+ERY+V+D + NEVLEEIEESKAFFQVYEGAVYMHQG TYLVK LNLS+ +A C++A
Sbjct: 519 AIEAERYKVVDQRRNEVLEEIEESKAFFQVYEGAVYMHQGRTYLVKSLNLSTMLAFCEEA 578
Query: 800 DLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGI 859
DLKY+TKTRDYTDIHV GGN AY + +KTTAQA C VTTTWFGFYR+ +GS
Sbjct: 579 DLKYYTKTRDYTDIHVIGGNLAYPRRAPNIPPSKTTAQANDCRVTTTWFGFYRIQKGSNQ 638
Query: 860 IFDT 863
I D+
Sbjct: 639 ILDS 642
>gi|168007651|ref|XP_001756521.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692117|gb|EDQ78475.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 826
Score = 852 bits (2202), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/757 (56%), Positives = 548/757 (72%), Gaps = 38/757 (5%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
EM+ HL+ +GS GQ+VH E + AR A E+ L T+ AL GI++LY+HQA +
Sbjct: 5 EMLRHLKDKLGSLGQIVHCEKLKARAASYGELEIELSQFTEEALGRMGITELYTHQAHGV 64
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
A G+N+VVAT T+SGKSLCYN+PVLE L+++ ++ ALY+FPTKALAQDQLRAL +
Sbjct: 65 NAVRNGRNIVVATSTASGKSLCYNVPVLEELTNNPNACALYLFPTKALAQDQLRALRELF 124
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
+SI +GVYDGDT R+ LRD+ARLLITNPDMLH+SI+P H QF R LSNL+
Sbjct: 125 GEKGSSIGLGVYDGDTNHDLRLRLRDSARLLITNPDMLHVSIMPCHRQFERFLSNLK--- 181
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
FVV+DEAHAY+G FGCHTALILRRL RL H+YG++P+F+ +A
Sbjct: 182 ----------------FVVVDEAHAYRGVFGCHTALILRRLRRLLHHLYGAEPNFIVCSA 225
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLR--SVLNKSQTDMDDTRN 502
T ANPREH MEL L +++IQ DGSP +K FV WNP S+LN
Sbjct: 226 TVANPREHAMELVGLREVDVIQGDGSPHGEKTFVFWNPPIVFMPVSILN----------- 274
Query: 503 AANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICV 562
P+ EVS L AEMVQHGLRCIAFC +RK ELV ++TREIL+ETAP LVD+I
Sbjct: 275 -----PPPLVEVSSLLAEMVQHGLRCIAFCNTRKSVELVHNHTREILKETAPTLVDTIRA 329
Query: 563 YRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAG 622
YRAGY AE RR IE+D FGG+L GVAATN+LELGID+G +D TLHLGFPGS+ASLWQQ+G
Sbjct: 330 YRAGYTAESRREIEKDLFGGRLRGVAATNSLELGIDIGSLDATLHLGFPGSVASLWQQSG 389
Query: 623 RSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEH 682
R+GRRE+ SL+VYVAF GPLDQ+FMK P+KLF PIE +DA N +VLEQHL+CAA+E+
Sbjct: 390 RAGRREKASLSVYVAFSGPLDQHFMKAPQKLFNEPIENAQVDASNRQVLEQHLMCAAVEY 449
Query: 683 PLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIE 742
P+ + +D+ + GSG SGI L N G L P+ + YIGHEK PS +SIRAI
Sbjct: 450 PIHIEHDKIFLGSGTQSGIMKLVNEGLLGRHPTNGPQDSSWHYIGHEKSPSQGVSIRAIC 509
Query: 743 SERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLK 802
+E+Y VI+ +NEV+EE+EE+KAFF+VYEGAVYMHQG T+L +L+ ++K+ALC +ADLK
Sbjct: 510 TEKYTVINQTTNEVIEEVEENKAFFEVYEGAVYMHQGKTFLCTKLDTAAKVALCTEADLK 569
Query: 803 YFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFD 862
Y+TKTRD+TD+HV GG AY K+ K + TTAQA C +TT WFGF R+W+ + + FD
Sbjct: 570 YYTKTRDFTDVHVLGGELAYPAKVVKGKYPITTAQASPCKITTKWFGFRRIWQRTNVTFD 629
Query: 863 TVELYLPKYSYESQAVWIQVPQSVKAVVE-QNFSFRSGLHAASHALLHVVPIYVRCNFSD 921
TV+L+LP+ SYESQA WI+VP V+ +E + S R G+HAASHALL+++P+Y+ CN D
Sbjct: 630 TVDLFLPEVSYESQAAWIRVPHLVRGDLEAEGLSLREGIHAASHALLNIIPLYIMCNPQD 689
Query: 922 LAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDM 958
L +C NP+D+RY+PER+LL+D+HPGG G++ QV M
Sbjct: 690 LGCDCANPNDTRYYPERLLLFDKHPGGIGIAAQVRPM 726
>gi|242060166|ref|XP_002451372.1| hypothetical protein SORBIDRAFT_04g000950 [Sorghum bicolor]
gi|241931203|gb|EES04348.1| hypothetical protein SORBIDRAFT_04g000950 [Sorghum bicolor]
Length = 966
Score = 812 bits (2098), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/793 (53%), Positives = 540/793 (68%), Gaps = 68/793 (8%)
Query: 195 CSDKSQLLPLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGIS 254
C L P MVEHL++GIG GQ+ HV++I R+A L +P L T+ AL++ G++
Sbjct: 142 CHGVEPLDPARMVEHLKQGIGKHGQIRHVQEIPGREASLCPLPSHLSQRTRDALRTIGVT 201
Query: 255 KLYSHQAESIMASLA----GKNVVVATMTSSGKSLCYNLPVLEALSHDLSSS-ALYMFPT 309
+LYSHQA++I A+ + K+VVV+T TSSGKSLCYN+PVLE++S ++S ALY+FPT
Sbjct: 202 RLYSHQAQAINAAASASGKSKHVVVSTSTSSGKSLCYNVPVLESISRPAAASCALYIFPT 261
Query: 310 KALAQDQLRALLAMTKAFDASID----IGVYDGDTTQKDRMWLRDNARLLITNPDMLHMS 365
KALAQDQL+ LL M K D + +YDGDT KDR +RD ARLLITNPDMLH+S
Sbjct: 262 KALAQDQLKTLLGMMKGADGGDLGDGVVSIYDGDTPMKDRARIRDGARLLITNPDMLHVS 321
Query: 366 ILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRL 425
ILP H QF RILSNL +VV+DEAH+Y+GAFGCHTALILRRL
Sbjct: 322 ILPCHAQFRRILSNLE-------------------YVVVDEAHSYRGAFGCHTALILRRL 362
Query: 426 CRLCSHVYGSDPSFVFSTATSANPREHCMELANLST--LELIQNDGSPCAQKLFVLWNPT 483
R+C+ VYGS P+F+ TAT ANPREH ELA L +EL+QNDGSPC K F+LWNP+
Sbjct: 363 KRVCADVYGSHPTFISCTATLANPREHVTELAGLEGDEVELVQNDGSPCGPKHFLLWNPS 422
Query: 484 SCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLS 543
+ + S EVS+LFAEMVQHGLRCIAFC++RKLCE VL+
Sbjct: 423 V-----------------SRQGRCPSAAQEVSHLFAEMVQHGLRCIAFCKTRKLCEAVLA 465
Query: 544 YTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHID 603
REILE+T+ L DSICVYR GYVAEDRRRIE FGG L GVAATNALELGIDVG ID
Sbjct: 466 RAREILEKTSAELADSICVYRGGYVAEDRRRIEAGLFGGTLRGVAATNALELGIDVGGID 525
Query: 604 VTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHI 663
TLHLGFPGS+ASLWQQAGRSGRR +PS+A+YV +G +DQYFM +P KLF P+E CH+
Sbjct: 526 ATLHLGFPGSMASLWQQAGRSGRRSKPSIAIYVGLDGAVDQYFMSFPHKLFGKPVEHCHV 585
Query: 664 DAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLS-SDPSLDSSAKI 722
DA+N KVL QHL CAALE PL +DE++FG G+ + + TL+++G+L+ + SLD + +
Sbjct: 586 DARNRKVLGQHLACAALEKPLCPEHDERHFGPGMDAVMATLRDQGHLTNTSNSLDHHSGV 645
Query: 723 FEYIGHEKMPSHTISIRAIESERYEVIDMQS-NEVLEEIEESKAFFQVYEGAVYMHQGHT 781
++Y+G +K P+ T+SIRAIE +RY+V+D Q VLEEIEESKAFFQV+EGAVYMHQG +
Sbjct: 646 WKYVGPDKNPARTVSIRAIEHDRYKVVDKQGYRRVLEEIEESKAFFQVHEGAVYMHQGVS 705
Query: 782 YLVKELNLSSKIALCQKA-DLKYFTKTRDYTDIH---VSGGNNAYATKISKDQLTKTTAQ 837
YLV++L+LSS+ A C+ A DLKY+T+ D T+I+ V G + AT +
Sbjct: 706 YLVEKLDLSSRTAYCRAAPDLKYYTRVHDVTEINILQVDGNGDGIATGDENASSSSRGRA 765
Query: 838 ALA-CTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQ-NFS 895
+ C VTT W F R+WR + + D++EL LP YS+ +QAVW+ VP +VKA VEQ
Sbjct: 766 RSSDCRVTTEWVRFDRIWRSNDQMSDSIELNLPPYSFHTQAVWVSVPVAVKAAVEQRGLG 825
Query: 896 FRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYF-------------PERILLY 942
F G+HAASHALL V+P+ + C SDL C S P +LLY
Sbjct: 826 FDGGVHAASHALLSVLPLRMICAASDLGTRCAAAAASGGGSGSGAPGDGGDSAPGVLLLY 885
Query: 943 DRHPGGTGVSKQV 955
D+HPGG G++ QV
Sbjct: 886 DKHPGGIGLAAQV 898
>gi|384251237|gb|EIE24715.1| DEAD-domain-containing protein, partial [Coccomyxa subellipsoidea
C-169]
Length = 852
Score = 796 bits (2057), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/755 (52%), Positives = 515/755 (68%), Gaps = 47/755 (6%)
Query: 218 GQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVAT 277
GQ+VH E I AR A + AL AL + G++ L++HQA++I A+LAGK+VVV T
Sbjct: 1 GQIVHTEQIPARAAKCSKPAAALSAPVMKALSARGVTGLFTHQAQAIDAALAGKHVVVCT 60
Query: 278 MTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAF--DASIDIGV 335
T+SGKSLCYNLP+LEAL D ++ALYMFPTKALAQDQLRAL + A D + I +
Sbjct: 61 STASGKSLCYNLPILEALVKDPRATALYMFPTKALAQDQLRALRELCAAAFGDKAPSIDI 120
Query: 336 YDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLI 395
YDGDT Q+DR +R+ A LLITNPDMLH SILP HGQFSR LSNLR
Sbjct: 121 YDGDTPQEDRGEVRERAHLLITNPDMLHCSILPVHGQFSRFLSNLR-------------- 166
Query: 396 FLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCME 455
++V+DE HAY+G FGCH AL+LRRL R+C Y DP F+ ++AT ANP+EH +
Sbjct: 167 -----YIVVDEGHAYRGVFGCHAALVLRRLQRICQREYRRDPRFIVASATIANPQEHIQQ 221
Query: 456 LANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVS 515
L + ++ ++ DGSP K F++WNP L+ + D R SPI E+S
Sbjct: 222 LLGVPSVHVVSEDGSPHGHKSFIMWNPP------LHGAAGVPSDERRG-----SPIVELS 270
Query: 516 YLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRI 575
L AE VQHGLR IAFC +RKLCELV +YTRE L+ TAP L SI VYRAGY ++RR I
Sbjct: 271 LLLAECVQHGLRTIAFCNTRKLCELVTAYTRETLKATAPELASSISVYRAGYSPQERREI 330
Query: 576 ERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVY 635
E F GKL VAATNALELG+DVG +D TLHLGFPGS+ASLWQQAGR+GRRE+PS+++Y
Sbjct: 331 ESALFNGKLWAVAATNALELGVDVGSLDATLHLGFPGSVASLWQQAGRAGRREQPSVSIY 390
Query: 636 VAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGS 695
+ F+GPLDQYFM PE LFK PIE ID +N ++L+QHL CAA E PL L D+ YFG
Sbjct: 391 IGFDGPLDQYFMHQPENLFKRPIETAQIDPENEQLLQQHLACAAAETPLLLQDDQAYFGP 450
Query: 696 GLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVI-DMQSN 754
+ + L++ G ++ P + +F Y+G + P+ I++RAI+ ERY ++ +
Sbjct: 451 RVPEIASFLQSVGLVNRHPHASTPDVLF-YVGSKDNPARQINLRAIDPERYSIVNEAAGG 509
Query: 755 EVLEEIEESKAFFQVYEGAVYMHQ----------GHTYLVKELNLSSKIALCQKADLKYF 804
EVLEEIEESKAFF+VY+GAVY++Q G TYL K+L+LSS++A+ + ADLKY+
Sbjct: 510 EVLEEIEESKAFFEVYDGAVYLYQARPQALTLCIGRTYLCKKLDLSSRVAVVRPADLKYY 569
Query: 805 TKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTV 864
TKTRD+ D+HV GG AYA + T A C VTT W GFYR+W+GSG +FDTV
Sbjct: 570 TKTRDFCDVHVIGGRTAYAKHSVHPAI--LTLIATPCQVTTRWLGFYRVWQGSGEVFDTV 627
Query: 865 ELYLPKYSYESQAVWIQVPQSVK-AVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLA 923
+L+LP + +QA +I+VPQS + A+ Q FR GLHAASHAL +VVP+++ CN SDL
Sbjct: 628 DLFLPDVQFNTQAAYIRVPQSARMALQAQGLPFRDGLHAASHALANVVPLFLLCNASDLG 687
Query: 924 PECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDM 958
EC NP+D+R+ PER+L+YD+HPGG G++KQ +
Sbjct: 688 NECDNPYDTRFRPERLLVYDKHPGGIGLAKQARPL 722
>gi|302795059|ref|XP_002979293.1| hypothetical protein SELMODRAFT_418902 [Selaginella moellendorffii]
gi|300153061|gb|EFJ19701.1| hypothetical protein SELMODRAFT_418902 [Selaginella moellendorffii]
Length = 1011
Score = 736 bits (1901), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/669 (53%), Positives = 459/669 (68%), Gaps = 53/669 (7%)
Query: 310 KALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPY 369
+ALAQDQLRALLA F I GVYDGDT Q +R LR+ AR+LITNPDMLH SILP+
Sbjct: 237 EALAQDQLRALLA----FSNDITAGVYDGDTNQAERQTLREKARILITNPDMLHCSILPF 292
Query: 370 HGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLC 429
H QF+R LSNLR ++VIDEAHAY+GAFGCH ALI+RRL R+C
Sbjct: 293 HKQFARFLSNLR-------------------YLVIDEAHAYRGAFGCHVALIIRRLRRIC 333
Query: 430 SH-------------------VYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGS 470
+H VYG+ P+F+ +AT ANPREH MEL L + I DGS
Sbjct: 334 AHRSFSFIAYTFVGVYRHCFAVYGTVPTFIVCSATVANPREHTMELTGLREVTSIAEDGS 393
Query: 471 PCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIA 530
PC +KLF+LWNP +R + D + K SPI EV+YLFAEMVQHGLRCI
Sbjct: 394 PCGEKLFLLWNPP--VRGI-------KDPGDDKPTKRFSPILEVAYLFAEMVQHGLRCIT 444
Query: 531 FCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAAT 590
FC++RKLCELVL+YT +L+ETAP LV +I YRAGY E+RRRIE+D FGGKL GVAAT
Sbjct: 445 FCKTRKLCELVLAYTHGVLKETAPDLVHTIQAYRAGYTPEERRRIEKDLFGGKLRGVAAT 504
Query: 591 NALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYP 650
+ALELGIDVG +D TLHLGFPG++ASLWQQAGR+GRRE+ SL++YVAFEGPLDQ+F K P
Sbjct: 505 SALELGIDVGSLDATLHLGFPGTVASLWQQAGRAGRREKTSLSIYVAFEGPLDQHFFKEP 564
Query: 651 EKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYL 710
+LF PIE ID+ N +VL QHL CAA EH L +YDE YF + L I+ L RG +
Sbjct: 565 LRLFSRPIENAQIDSHNPQVLGQHLTCAAFEHHLHSVYDEDYFSTSLDGAISELVGRGCV 624
Query: 711 SSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVY 770
+ PS S + YIG K+PS T SIRAI+ ++Y ++D +++V+EE+E ++AFFQ+Y
Sbjct: 625 ARHPSC-SIVNSWTYIGEAKLPSATFSIRAIDPDKYSIVDEVTSKVIEEVEANRAFFQIY 683
Query: 771 EGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQ 830
EGAVY++QG +LV LNL+ ++A C+ D+KY+TKTRDYTD+HV G Y + S +
Sbjct: 684 EGAVYINQGKKFLVNRLNLTERLAFCRPTDVKYYTKTRDYTDVHVVGSELTYPKRASDVK 743
Query: 831 LTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVV 890
T+AQ C +TT+W GF ++W S FD+V+L+LP SY+SQA WI+VP VK V
Sbjct: 744 YRLTSAQVNRCQITTSWIGFRKIWEVSNETFDSVDLHLPDVSYDSQAAWIRVPNEVKEAV 803
Query: 891 EQN-FSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGT 949
E R+GLH+A HALL+V+P+Y+ CN SD+ +C +P D RY+P R+L++DR PGG
Sbjct: 804 EAKCLDLRAGLHSACHALLNVLPLYIMCNPSDVGTDCAHPQDKRYYPVRLLVFDRCPGGI 863
Query: 950 GVSKQVTDM 958
G+S Q +
Sbjct: 864 GISAQAQPL 872
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 105/225 (46%), Gaps = 27/225 (12%)
Query: 17 LKKIVEAFAFVSIFSAHLQLRREKVILSHVKGALNQ-LEKFGVRVGIEDIENLAVLCPKV 75
++++ A V F L+ R ++ + VK AL V + DI++LA +CPKV
Sbjct: 1 MERVFNALNSVCGF---LEKNRIELTWASVKSALQHSCTNIDEVVTLADIKDLAFICPKV 57
Query: 76 VQFANDDMESKNHDDSIVIINVSTEERDKVEDNLGSGQKAISLSKIFNAMKKRERSFKTN 135
+ + M D + + + + G++ +S S + +++R+ +F
Sbjct: 58 IVVKS--MTGDESQDVSITMEIFPKS--------CHGKRNMSDSALTQLIQRRKAAFDY- 106
Query: 136 LWEAVNLLMCKLQKRV---MSLSVEDLLTYVKERRTD---VRGNEVKRAR---RSQSSTS 186
AVN ++ ++ +++E + +Y KE R +R + AR R +S S
Sbjct: 107 ---AVNDMISNIRANTGVESDVTLEQMRSYAKELRVPGGVLRTGPLLYARTVPRRANSGS 163
Query: 187 SSHSFQRRCSDKSQLLPLEMVEHLRKGIGSQGQMVHVEDISARKA 231
SS+ Q C D L EMVEHL++ +G+ GQ++H E + R A
Sbjct: 164 SSNRRQEHCKDVKTLSASEMVEHLKEVLGTSGQIIHCERLKCRDA 208
>gi|302813832|ref|XP_002988601.1| hypothetical protein SELMODRAFT_447379 [Selaginella moellendorffii]
gi|300143708|gb|EFJ10397.1| hypothetical protein SELMODRAFT_447379 [Selaginella moellendorffii]
Length = 1166
Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/669 (53%), Positives = 461/669 (68%), Gaps = 53/669 (7%)
Query: 310 KALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPY 369
+ALAQDQLRALLA F I GVYDGDT+Q +R LR+ AR+LITNPDMLH SILP+
Sbjct: 368 EALAQDQLRALLA----FSNDITAGVYDGDTSQAERQTLREKARILITNPDMLHCSILPF 423
Query: 370 HGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLC 429
H QF+R LSNLR +VIDEAHAY+GAFGCH ALILRRL R+C
Sbjct: 424 HKQFARFLSNLR-------------------HLVIDEAHAYRGAFGCHVALILRRLRRIC 464
Query: 430 SH-------------------VYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGS 470
+H VYG+ P+F+ +AT ANPREH MEL L + I DGS
Sbjct: 465 AHCSFSFIAYTFVGVYRHCFAVYGTVPTFIVCSATVANPREHTMELTGLREVTSIAEDGS 524
Query: 471 PCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIA 530
PC +KLF+LWNP +R + D D + A K SPI EV+YLFAEMVQHGLRCI
Sbjct: 525 PCGEKLFLLWNPP--VRGI-----KDPGDDKPA--KRFSPILEVAYLFAEMVQHGLRCIT 575
Query: 531 FCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAAT 590
FC++RKLCELVL+YT +L+ETAP LV +I YRAGY E+RRRIE+D FGGKL GVAAT
Sbjct: 576 FCKTRKLCELVLAYTHGVLKETAPDLVHTIQAYRAGYTPEERRRIEKDLFGGKLRGVAAT 635
Query: 591 NALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYP 650
+ALELGIDVG +D TLHLGFPG++ASLWQQAGR+GRRE+ SL++YVAFEGPLDQ+F K P
Sbjct: 636 SALELGIDVGSLDATLHLGFPGTVASLWQQAGRAGRREKTSLSIYVAFEGPLDQHFFKEP 695
Query: 651 EKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYL 710
+LF PIE ID+ N +VL QHL CAA EH L +YDE YF + L I+ L +G +
Sbjct: 696 LRLFSRPIENAQIDSHNPQVLGQHLTCAAFEHHLHSVYDEDYFSTSLDGAISELVRKGCV 755
Query: 711 SSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVY 770
+ PS S + YIG K+PS T SIRAI+ ++Y ++D +++V+EE+E ++AFFQ+Y
Sbjct: 756 ARHPSC-SIVNSWTYIGEAKLPSATFSIRAIDPDKYSIVDEVTSKVIEEVEANRAFFQIY 814
Query: 771 EGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQ 830
EGAVY++QG +LV LNL+ ++A C+ D+KY+TKTRDYTD+HV G Y + S +
Sbjct: 815 EGAVYINQGKKFLVNRLNLTERLAFCRPTDVKYYTKTRDYTDVHVVGSELTYPKRASDVK 874
Query: 831 LTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVV 890
T+AQ C +TT+W GF ++W S FD+V+L+LP SY+SQA WI+VP VK V
Sbjct: 875 YRLTSAQVNRCQITTSWIGFRKIWEVSNETFDSVDLHLPNVSYDSQAAWIRVPNEVKEAV 934
Query: 891 EQN-FSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGT 949
E R+GLH+A HALL+V+P+Y+ CN SD+ +C +P D RY+P R+L++DR PGG
Sbjct: 935 EAKCLDLRAGLHSACHALLNVLPLYIMCNPSDVGTDCAHPQDKRYYPVRLLVFDRCPGGI 994
Query: 950 GVSKQVTDM 958
G+S Q +
Sbjct: 995 GISAQAQPL 1003
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 108/230 (46%), Gaps = 28/230 (12%)
Query: 14 PVWLKKIVEAFAFVSIFSAHLQLRREKVILSHVKGALNQ-LEKFGVRVGIEDIENLAVLC 72
P L+++ F ++ L+ R ++ + VK AL V + DI++LA +C
Sbjct: 126 PPSLQRMERVFNALNSVCGFLEKNRIELTWASVKSALQHSCTNIDEVVTLADIKDLAFIC 185
Query: 73 PKV--VQFANDDMESKNHDDSIVIINVSTEERDKVEDNLGSGQKAISLSKIFNAMKKRER 130
PKV V+ D ES++ ++ I S G++ +S S + ++R+
Sbjct: 186 PKVIVVKCMTGD-ESQDVSITMEIFPKSCH-----------GKRNMSDSALTQLTQRRKA 233
Query: 131 SFKTNLWEAVNLLMCKLQKRV---MSLSVEDLLTYVKERRTD---VRGNEVKRARR---S 181
+F AVN ++ ++ + +++E + +Y KE R +R + AR
Sbjct: 234 AFDY----AVNDIISNIRAKTGVESDVTLEQMRSYAKELRVPGGVLRTGPLLYARTVPWR 289
Query: 182 QSSTSSSHSFQRRCSDKSQLLPLEMVEHLRKGIGSQGQMVHVEDISARKA 231
+S SSS+ Q C D L EMVEHL++ +G+ GQ++H E + R A
Sbjct: 290 ANSGSSSNRRQEHCKDVKTLSASEMVEHLKEVLGTSGQIIHCERLKCRHA 339
>gi|357138438|ref|XP_003570799.1| PREDICTED: putative ATP-dependent helicase HRQ1-like [Brachypodium
distachyon]
Length = 983
Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/789 (50%), Positives = 519/789 (65%), Gaps = 69/789 (8%)
Query: 195 CSDKSQLLPLEMVEHLRKGIGSQGQMVHVEDISARKAVLV---EIPDALLDNTKSALKST 251
C +L P EMV HLR G+GS GQMVHVE+I R AV ++P L D TK+AL+
Sbjct: 175 CRSTEKLDPAEMVSHLRSGLGSAGQMVHVEEIPGRPAVYSSGSQLPAQLSDATKAALRRI 234
Query: 252 GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKA 311
G++ LY+HQA+++ A+ GK+VVV+T TSSGKSLCYN+PVL++++ ++ ALY+FPTKA
Sbjct: 235 GVTGLYAHQAQAVAAAAKGKHVVVSTSTSSGKSLCYNIPVLDSMASSSTTCALYIFPTKA 294
Query: 312 LAQDQLRALLAMTKAFDASID---IGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILP 368
LAQDQL+ L M + + + +YDGDT ++R +R AR+L+TNPDMLH+SILP
Sbjct: 295 LAQDQLKTFLQMMTGGELGLGPDAVAIYDGDTPVEERARIRVKARVLVTNPDMLHVSILP 354
Query: 369 YHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRL 428
H F R LS LR VV+DEAHAY+GAFGCH +L+LRRL RL
Sbjct: 355 CHAHFRRFLSGLR-------------------HVVVDEAHAYRGAFGCHVSLVLRRLRRL 395
Query: 429 CSHVYG-SDPSFVFSTATSANPREHCMELANL--STLELIQNDGSPCAQKLFVLWNPTSC 485
C+H+YG S P+FVF TAT ANPREH M LA L +EL+ D SP A K FVLWN
Sbjct: 396 CAHLYGGSPPTFVFCTATLANPREHAMALAGLEEGEIELVDADASPRAAKRFVLWN---- 451
Query: 486 LRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYT 545
+A + +SSP+++V+ L AEMVQHGLRCIAFC++RKLCE VL+
Sbjct: 452 ----------------SARSSSSSPVTDVARLLAEMVQHGLRCIAFCKTRKLCEQVLAQA 495
Query: 546 REILEETAP---HLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHI 602
R +LEE +P L S+ VYR GYVA DRRRIE F GKL GVAATNALELGIDVGHI
Sbjct: 496 RGLLEEASPASPELASSVAVYRGGYVAADRRRIEEGLFSGKLLGVAATNALELGIDVGHI 555
Query: 603 DVTLHLGFPGSIASLWQQ-AGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECC 661
D TLHLGFPGS+ASLWQQ R R S+AVYVAF+ LDQYFM +P+KLF PIE C
Sbjct: 556 DATLHLGFPGSMASLWQQAGRAGRRAARESVAVYVAFDCALDQYFMNFPQKLFGKPIEHC 615
Query: 662 HIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFG-SGLSSGITTLKNRGYLSSDPSLDSSA 720
H+DA+N KVL QHL CAA E L D++YFG + L + +T L++RG+L+ + +SS
Sbjct: 616 HVDARNPKVLRQHLACAAAESLLRPDLDKRYFGAAALDAAMTVLRDRGHLAMTNNNNSSP 675
Query: 721 KIFEYIGH-EKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQG 779
++ Y G + P+ +SIRA+E +++ V+ V+EEIEESKAFFQVY+GAVYMHQG
Sbjct: 676 AMWRYSGPVGRRPASAVSIRAVEHDKFTVMQTVGRRVMEEIEESKAFFQVYDGAVYMHQG 735
Query: 780 HTYLVKELNLSSKIALCQKA-DLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQA 838
TYLV+ L+L+SK A C+ A L Y TK DYTDI ++ + +A
Sbjct: 736 DTYLVERLDLTSKTAYCRTAYGLSYHTKPEDYTDIVIAA--TGDDDDDDDHACSTRGVRA 793
Query: 839 LACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQ---NFS 895
CTVTT W G+ R+++ + + + + L LP +S+++QAVW +P++VKA VEQ N
Sbjct: 794 DTCTVTTRWVGYRRIYKSTNQVSEVIPLDLPSFSFDTQAVWAPIPETVKAAVEQRSNNPR 853
Query: 896 FRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSR---------YFPERILLYDRHP 946
FR+G+H ASHA+L ++P+++ C+ SDL EC D+R +RILLYD+HP
Sbjct: 854 FRTGVHGASHAILGILPLHMMCSSSDLGTECGCTADTRQEETRGGDAVSTDRILLYDKHP 913
Query: 947 GGTGVSKQV 955
GG G++ Q
Sbjct: 914 GGIGLAAQA 922
>gi|8346548|emb|CAB93712.1| putative protein [Arabidopsis thaliana]
Length = 1058
Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/536 (63%), Positives = 410/536 (76%), Gaps = 16/536 (2%)
Query: 432 VYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLN 491
VY D + T +N R +ELANLS LEL+ DGSP ++KLFVLWNP++ S
Sbjct: 473 VYDGDTPYKDRTRLRSNAR---LELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSE 529
Query: 492 KSQTDMDDTRNAANKTSS--------PISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLS 543
KS + + AA+K S P SEVS+LFAEMVQHGLRCIAFC SRKLCELVL
Sbjct: 530 KSSKVVSSSEAAADKPSGAAVDTLSGPASEVSHLFAEMVQHGLRCIAFCPSRKLCELVLC 589
Query: 544 YTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHID 603
TREIL ETAPHLV++I YR GY+AEDRR+IE D FGGKLCG+AATNALELGIDVGHID
Sbjct: 590 LTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIAATNALELGIDVGHID 649
Query: 604 VTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHI 663
VTLHLGFPGSIASLWQQAGRSGRR++PSLAVYVAF GPLDQY+M +P+KLF SPIECCHI
Sbjct: 650 VTLHLGFPGSIASLWQQAGRSGRRQKPSLAVYVAFLGPLDQYYMSFPDKLFGSPIECCHI 709
Query: 664 DAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIF 723
D+QN VL QHL CAALEHPLSL YD+++FGSGLS + L+N+G+LS DPS DSS++I+
Sbjct: 710 DSQNKHVLMQHLACAALEHPLSLQYDQQHFGSGLSDPLAELRNKGFLSFDPSRDSSSRIW 769
Query: 724 EYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYL 783
YIG EK P+ +SIRAIE+ RY V++ +S +VL+EIEESKAFF VYEGA+YM+QG YL
Sbjct: 770 NYIGREKNPARIVSIRAIETVRYRVMEKKSKDVLDEIEESKAFFHVYEGAIYMNQGRNYL 829
Query: 784 VKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTV 843
V L++ K+ALC+ ++ Y+T+TRDYTDI V+GG+ AY K K K T Q AC V
Sbjct: 830 VTSLDIKEKVALCELVNVDYYTRTRDYTDIKVTGGDTAYPVKAPK----KPTPQTHACRV 885
Query: 844 TTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQ-NFSFRSGLHA 902
TT WFGF R+ R + + D VEL LP Y+Y+SQAVWIQVP SVK VE N FR+GLHA
Sbjct: 886 TTKWFGFLRIRRRNNEVIDDVELSLPSYTYQSQAVWIQVPMSVKLAVETANLPFRAGLHA 945
Query: 903 ASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDM 958
A HAL++VVP V CN+SD+APECPNP + RYFP RIL+YDRHPGGTG+S ++ +
Sbjct: 946 ACHALVNVVPTRVTCNYSDIAPECPNPQEQRYFPARILVYDRHPGGTGISAKICPL 1001
Score = 318 bits (815), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 171/317 (53%), Positives = 224/317 (70%), Gaps = 12/317 (3%)
Query: 49 ALNQLEKFGVRVGIEDIENLAVLCPKVVQFANDDMESKNHDDSIVIINVSTEERDKVEDN 108
+L++L GVRV I+D++NL+V+CPKV+ DD E+ N++++IVI D +E +
Sbjct: 197 SLSRLAMSGVRVRIQDVKNLSVICPKVI---TDDYEAVNYENAIVIA-------DYLEMD 246
Query: 109 LGSGQKAISLSKIFNAMKKRERSFKTNLWEAVNLLMCK-LQKRVMSLSVEDLLTYVKERR 167
SG+K I L+K+F+AMKKRE SFK++ WE++ L+ K + +++S+E LL + E R
Sbjct: 247 EKSGRKKIPLAKLFSAMKKREASFKSDFWESIRSLLNKNTGESGIAISLEGLLKFASEGR 306
Query: 168 TDVRGNEVKRARRSQSSTSSSHSFQRRCSDKSQLLPLEMVEHLRKGIGSQGQMVHVEDIS 227
D GNE ++A + TS S FQ C + LLP EMVEHLR GIGS+GQ+VHVE I
Sbjct: 307 AD-GGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGIGSKGQVVHVEVIK 365
Query: 228 ARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCY 287
ARK+ VE+ D L + TKSALK G++ LYSHQAE+I A+LAGKNV VATMTSSGKSLCY
Sbjct: 366 ARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAGKNVAVATMTSSGKSLCY 425
Query: 288 NLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMW 347
N+PV E L D +S ALY+FPTKALAQDQLRAL + K F+ASI++GVYDGDT KDR
Sbjct: 426 NVPVFEELCKDTNSCALYLFPTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTR 485
Query: 348 LRDNARLLITNPDMLHM 364
LR NARL + N L +
Sbjct: 486 LRSNARLELANLSELEL 502
>gi|297810913|ref|XP_002873340.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297319177|gb|EFH49599.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 1067
Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/534 (62%), Positives = 403/534 (75%), Gaps = 17/534 (3%)
Query: 432 VYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTS------- 484
VY D + T +N R +ELANLS LEL+ DGSP ++KLFVLWNP++
Sbjct: 484 VYDGDTPYKDRTRLRSNAR---LELANLSELELVVKDGSPSSEKLFVLWNPSAPPAIKPE 540
Query: 485 --CLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVL 542
+++ D AA+ S P SEVS+LFAEMVQHGLRCI FC SRKLCELVL
Sbjct: 541 ESSKVVSSSEAAADKPSGATAADTPSGPASEVSHLFAEMVQHGLRCIVFCPSRKLCELVL 600
Query: 543 SYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHI 602
TREIL ETAPHLV++I YR GY+AEDRR+IE D FGGKLCG+AATNALELGIDVGHI
Sbjct: 601 CLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIAATNALELGIDVGHI 660
Query: 603 DVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCH 662
DVTLHLGFPGSIASLWQQAGRSGRR++PSLAVYVAF GPLDQY+M +P+KLF S IECCH
Sbjct: 661 DVTLHLGFPGSIASLWQQAGRSGRRQKPSLAVYVAFLGPLDQYYMSFPDKLFGSSIECCH 720
Query: 663 IDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKI 722
ID+QN VL QHL CAALEHPLSL YDE++FGSG+S + L+ G+LS DPS DSS++I
Sbjct: 721 IDSQNKHVLSQHLACAALEHPLSLQYDEQHFGSGISGALAELRKEGFLSFDPSRDSSSRI 780
Query: 723 FEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTY 782
+ YIG EK P+ +SIRAIE+ RY V++ +S ++L+EIEESKAFF VYEGA+YM+QG Y
Sbjct: 781 WNYIGREKKPTKIVSIRAIETVRYRVMEKKSKDLLDEIEESKAFFHVYEGAIYMNQGRNY 840
Query: 783 LVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACT 842
L L++ K+ALC+ D+ Y+T+TRDYTDI V+GG+ AY K+Q K T Q+ AC
Sbjct: 841 LGTSLDIKEKVALCELVDVDYYTRTRDYTDIKVTGGDTAY----EKNQSNKPTPQSHACR 896
Query: 843 VTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQ-NFSFRSGLH 901
VTT WFGF R+ R + + D VEL LP Y+YESQAVWI VP SVK VE FR+GLH
Sbjct: 897 VTTKWFGFLRIRRKNNEVIDDVELSLPSYTYESQAVWIHVPMSVKLAVETAKLPFRAGLH 956
Query: 902 AASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
AA HAL++VVP+ V CN+SD+APECPNP + RYFP RILLYDRHPGGTG+S ++
Sbjct: 957 AACHALVNVVPVKVTCNYSDIAPECPNPQEQRYFPARILLYDRHPGGTGISAKI 1010
Score = 313 bits (801), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 167/319 (52%), Positives = 225/319 (70%), Gaps = 12/319 (3%)
Query: 49 ALNQLEKFGVRVGIEDIENLAVLCPKVVQFANDDMESKNHDDSIVIINVSTEERDKVEDN 108
+L++L GVRVGI+D++NL+V+CPKV+ DD E+ N++++IVI + ERD+
Sbjct: 208 SLSRLALSGVRVGIQDVKNLSVICPKVI---TDDFEAVNYENAIVIADYP--ERDE---- 258
Query: 109 LGSGQKAISLSKIFNAMKKRERSFKTNLWEAVNLLMCK-LQKRVMSLSVEDLLTYVKERR 167
G+K L+K+F+AMKKRE SFK++ W+++ L+ K + +++S+E +L + E R
Sbjct: 259 -KPGRKKTPLAKVFSAMKKRETSFKSDFWDSIKSLLNKNTGESGIAISLEGMLKFASEGR 317
Query: 168 TDVRGNEVKRARRSQSSTSSSHSFQRRCSDKSQLLPLEMVEHLRKGIGSQGQMVHVEDIS 227
V GNE ++A + TS S Q C + + LLP EMVEHLR GIGS+GQ+VHVE I+
Sbjct: 318 A-VGGNEARQAGKGSCPTSGSRKSQTLCRETNSLLPSEMVEHLRNGIGSKGQVVHVEVIN 376
Query: 228 ARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCY 287
ARK+ VE+ D L + TKSALK G++ LYSHQAE+I A+L+GKNV VATMTSSGKSLCY
Sbjct: 377 ARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALSGKNVSVATMTSSGKSLCY 436
Query: 288 NLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMW 347
N+PV E L D +S ALY+FPTKALAQDQLRAL + K F+ASI +GVYDGDT KDR
Sbjct: 437 NVPVFEELCKDTNSCALYLFPTKALAQDQLRALSDLIKGFEASIQMGVYDGDTPYKDRTR 496
Query: 348 LRDNARLLITNPDMLHMSI 366
LR NARL + N L + +
Sbjct: 497 LRSNARLELANLSELELVV 515
>gi|242046250|ref|XP_002460996.1| hypothetical protein SORBIDRAFT_02g038865 [Sorghum bicolor]
gi|241924373|gb|EER97517.1| hypothetical protein SORBIDRAFT_02g038865 [Sorghum bicolor]
Length = 746
Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/570 (60%), Positives = 411/570 (72%), Gaps = 46/570 (8%)
Query: 388 VTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSA 447
T + I +R++VIDEAH+YKGAFGCHTALI++RL R+CS+VYGS P+F+F TATSA
Sbjct: 150 AATSCHRILSNLRYIVIDEAHSYKGAFGCHTALIIQRLKRICSNVYGSHPTFIFCTATSA 209
Query: 448 NPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKT 507
NP EH MELANL +ELIQNDGSPC K F+LWNP M + R+ A+
Sbjct: 210 NPCEHVMELANLDEVELIQNDGSPCGSKYFLLWNPP-----------LHMTEGRSKASSV 258
Query: 508 SSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGY 567
RSR REIL+ETA LVDSICVYRAGY
Sbjct: 259 PR-----------------------RSR----------REILQETAKELVDSICVYRAGY 285
Query: 568 VAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRR 627
+AEDRR+IE D FGGKL GVAATNALELGIDVGHID TLHLGFPGSIASLWQQAGRSGRR
Sbjct: 286 IAEDRRKIEADLFGGKLRGVAATNALELGIDVGHIDATLHLGFPGSIASLWQQAGRSGRR 345
Query: 628 ERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLI 687
+ SLA+YVAFEGPLDQYFMK+P KLF PIE C +D+ N KVL QHL CAA EHPL L
Sbjct: 346 AKQSLAIYVAFEGPLDQYFMKFPHKLFGRPIEHCQVDSHNLKVLGQHLACAAYEHPLCLQ 405
Query: 688 YDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYE 747
YDE YFGS L +TTLK++GY+ ++ + + ++ YIG E+ PS +SIRAIE ++Y+
Sbjct: 406 YDECYFGSTLDRVMTTLKDKGYIINNRAGSFCSSMWNYIGPERSPSQAVSIRAIEQDKYK 465
Query: 748 VIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKT 807
VID +N +LEEIEESKAFFQVYEGAVYMHQG YLV+EL+L+S+ A C+KADLKY+TKT
Sbjct: 466 VIDKLNNRLLEEIEESKAFFQVYEGAVYMHQGVNYLVEELDLASRTAFCRKADLKYYTKT 525
Query: 808 RDYTDIHVSGGNNAY-ATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVEL 866
RDYTDI+V GG AY T K KTTAQA CTVTT WFGFYR+ + S I D++EL
Sbjct: 526 RDYTDINVLGGEFAYLPTSTCKTDRVKTTAQANDCTVTTKWFGFYRISKSSNKISDSLEL 585
Query: 867 YLPKYSYESQAVWIQVPQSVKAVVEQ-NFSFRSGLHAASHALLHVVPIYVRCNFSDLAPE 925
LP YS+ SQAVW+++P SVK VE+ FRSG HAASHALL+VVP+++ C+ SDL E
Sbjct: 586 NLPPYSFISQAVWVRIPHSVKITVEERKLEFRSGSHAASHALLNVVPLHMMCSASDLGTE 645
Query: 926 CPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
C NPH++R P+RILLYDRHPGG G+ Q
Sbjct: 646 CANPHETRGIPDRILLYDRHPGGIGIVSQA 675
>gi|145347862|ref|XP_001418379.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578608|gb|ABO96672.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 815
Score = 652 bits (1683), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/786 (45%), Positives = 484/786 (61%), Gaps = 72/786 (9%)
Query: 206 MVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGIS---KLYSHQAE 262
V+HL+ + S GQ+VHVE+I A+ A + L D T +A S GI KL+SHQA
Sbjct: 6 FVDHLKTTLASSGQIVHVENIPAKPAARTPLASKLSDVTLAAFASAGIDIERKLFSHQAR 65
Query: 263 SIMASL----AGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLR 318
+I L K+V+VA+ T+SGKS+CYN+P +E L D +++ALYMFPTKALAQDQLR
Sbjct: 66 AIETVLDEREPRKHVIVASGTASGKSVCYNVPTIETLLADPTATALYMFPTKALAQDQLR 125
Query: 319 ALLAM----TKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFS 374
AL + ++ + +IG+YDGD + R +R+NARL+ITNPDMLH+S+LP H ++
Sbjct: 126 ALRNILSNIPRSEETVFEIGMYDGDVREDARTEVRENARLIITNPDMLHVSMLPSHKAWA 185
Query: 375 RILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYG 434
R+LS LR +VV+DEAHAY G FG H ALI+RRL RLCS +YG
Sbjct: 186 RVLSGLR-------------------YVVVDEAHAYSGVFGSHVALIIRRLRRLCSELYG 226
Query: 435 SDPSFVFSTATSANPREHCMELANLS-------TLELIQNDGSPCAQKLFVLWNPTSCLR 487
S P F+ S+AT ANP EH +L +E + NDG+P K F+LWNP
Sbjct: 227 SSPQFIISSATVANPLEHARDLIGYDGVHPERDVIEAVTNDGAPRGVKTFLLWNP----- 281
Query: 488 SVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTRE 547
+L Q+ +T + + L AE VQH LRC+AFC++RKLCELVL YTRE
Sbjct: 282 -MLKPGQSKQTNTERKFRRET--------LLAECVQHNLRCLAFCKTRKLCELVLVYTRE 332
Query: 548 ILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLH 607
IL +APHL D + YR GY A +RR IE++ F G L GVA TNALELGIDVG +DVTLH
Sbjct: 333 ILRSSAPHLADKVASYRGGYEAIERRAIEKELFSGVLLGVATTNALELGIDVGSLDVTLH 392
Query: 608 LGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQN 667
LGFPGS+ASLWQQAGR+GRRE +L+VYVAF+GPLDQ+FM+ P LF +P+E ++ A+N
Sbjct: 393 LGFPGSVASLWQQAGRAGRREGHALSVYVAFDGPLDQHFMRQPRALFDAPLEMSYVWAEN 452
Query: 668 HKVLEQHLVCAALEHPL--SLIYDEKYFGSGLSSGITTLKNRGYLSSDPSL---DSSAKI 722
++EQHL CAA E PL + DE YFG L + SL D +A I
Sbjct: 453 PTIVEQHLACAAYERPLFANPDVDEVYFGPKTREIAGKLARNKLMRDARSLVAWDLNAAI 512
Query: 723 FEYI--GHEKMPSHTISIRAIESERYEVIDMQS--NEVLEEIEESKAFFQVYEGAVYMHQ 778
+ + +K P+ +S+R IE ERYEVID+ +V+ IE SKAFF+VYEGAVY HQ
Sbjct: 513 AQPLLAATDKTPALDVSVRTIEEERYEVIDIGGAREKVIASIEASKAFFEVYEGAVYTHQ 572
Query: 779 GHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQA 838
G T L +L++ + A + AD+KYFT+ + T V GG AY + +KD L+ Q
Sbjct: 573 GRTLLCTKLDIPRRRAFVRMADVKYFTRVKHETTCAVPGGMRAY--EETKDALSIKCDQV 630
Query: 839 LACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYS-YESQAVWIQVPQSVKA-VVEQNFSF 896
+ TT+ GF R+ RGS FD E + P+ + + + W+++P V +
Sbjct: 631 ---DIRTTFTGFSRVARGSQAKFDH-EAFPPRTTEFRTVGTWLRIPDDVVTDASDAGIDL 686
Query: 897 RSGLHAASHALLHVVPIYVRCNFSDLAPECPNP----HDSRYFPERILLYDRHPGGTGVS 952
R+G+HAASHALL+ +P+ V C +D+ EC + H SRY P R L+YDRH GG G++
Sbjct: 687 RAGVHAASHALLNALPLSVPCGDADVGCECFSADLYRHTSRYAPFRFLIYDRHLGGVGIA 746
Query: 953 KQVTDM 958
K+ + +
Sbjct: 747 KRASAL 752
>gi|255074373|ref|XP_002500861.1| predicted protein [Micromonas sp. RCC299]
gi|226516124|gb|ACO62119.1| predicted protein [Micromonas sp. RCC299]
Length = 959
Score = 637 bits (1644), Expect = e-180, Method: Compositional matrix adjust.
Identities = 350/800 (43%), Positives = 485/800 (60%), Gaps = 91/800 (11%)
Query: 194 RCSDKSQLLPLEMVEHLRKG---IGSQGQMVHVEDISARKAVLV---EIPDALLDNTKSA 247
RC QL + HL G +G +GQ H D+ AR L P AL T +A
Sbjct: 81 RCHGLEQLDVDAFIAHLTIGPDSLGGKGQCEHRLDVPARPTRLAPEGSPPPALRPATVAA 140
Query: 248 LKSTGIS---------KLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHD 298
L ++G+ +L+SHQ E I A+L GKNV VAT T+SGKS+CYN PVL++L HD
Sbjct: 141 LVASGVPLHDADHARLRLFSHQHEGICAALRGKNVCVATGTASGKSVCYNAPVLDSLLHD 200
Query: 299 LSSSALYMFPTKALAQDQLRALLAMTKA-------FDASIDIGVYDGDTTQKDRMWLRDN 351
++ALY+FPTKALAQDQ+RAL M A ID+GVYDGDT + +R +R
Sbjct: 201 PDATALYLFPTKALAQDQIRALRVMLDGAATYLGDHAAPIDVGVYDGDTPETERTRVRAE 260
Query: 352 ARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYK 411
RL+ITNPDMLH+ +LP + +++R+ L+ +VV+DEAH Y+
Sbjct: 261 CRLVITNPDMLHVGLLPQYKRWARVFKGLK-------------------YVVLDEAHVYR 301
Query: 412 GAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSP 471
G FG H +L++RRL R+ +YGSDP F+ ++AT ANPREH ++L E+I DGSP
Sbjct: 302 GVFGSHVSLVVRRLRRISRELYGSDPRFIVTSATIANPREHAVDL-----WEVIDVDGSP 356
Query: 472 CAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAF 531
+K F++WNP + SSPI EV+ L AE V+H L+CIAF
Sbjct: 357 SGEKTFLMWNPPA---------------------PRSSPIVEVAALLAECVRHDLKCIAF 395
Query: 532 CRSRKLCELVLSYTREILEET-APHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAAT 590
C+++KLCELVL Y REIL +T A HL DS+ YR GY A DRR +E FGG L GVAAT
Sbjct: 396 CKTKKLCELVLRYCREILRDTGAGHLADSVAAYRGGYAAVDRRAVEGALFGGALRGVAAT 455
Query: 591 NALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYP 650
NALELG+DVG++D TLHLGFPG++ASL QQ+GR+GRR R +L VYVAF+GPLDQYFM+ P
Sbjct: 456 NALELGVDVGYLDCTLHLGFPGTVASLVQQSGRAGRRGRRALGVYVAFDGPLDQYFMRDP 515
Query: 651 EKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYL 710
+LF+ PIE +D QN K++ H CAA E PL E G
Sbjct: 516 ARLFERPIERAAVDPQNFKIMRAHAQCAAHEIPLDPRVAEDN---------RPGGGGGGG 566
Query: 711 SSDPSLDSSAKIFEYIG----HEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAF 766
P+ D A++ G E+ P++ +SIR IE ERY ++D S V+EE+E SKAF
Sbjct: 567 GGGPAPD--ARLVWCGGLVSDGERGPANGVSIRTIEEERYRIVDEASGRVIEEVEASKAF 624
Query: 767 FQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHV---SGGNNAYA 823
++VY GAVY++Q TYL K L++ S+ A + AD+KYFT T D T + + +AY
Sbjct: 625 WEVYPGAVYLNQARTYLCKSLDVESRTARVRLADVKYFTGTVDATTVTLVQHGSQRHAYP 684
Query: 824 TKIS----KDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVW 879
+ + Q TTAQ C + T+ ++++W+G+G +FDTV L LP +Y+++A W
Sbjct: 685 HRPGPAHRRPQFPGTTAQCAECEIKVTFSAYHKIWQGTGRVFDTVSLNLPDVTYKTRAAW 744
Query: 880 IQVPQSVKAVVEQN-FSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPER 938
I+VP + E++ FR+G+HAA+HA+++ +P+++ N SD+ EC +P Y P R
Sbjct: 745 IRVPDGARRECEESGVDFRAGVHAATHAMINALPLFLMVNQSDVGAECDDPQRGHYKPTR 804
Query: 939 ILLYDRHPGGTGVSKQVTDM 958
IL++DR PGG G++++ +
Sbjct: 805 ILIFDRQPGGVGIAERAAPV 824
>gi|224121418|ref|XP_002318577.1| predicted protein [Populus trichocarpa]
gi|222859250|gb|EEE96797.1| predicted protein [Populus trichocarpa]
Length = 460
Score = 634 bits (1634), Expect = e-179, Method: Compositional matrix adjust.
Identities = 296/387 (76%), Positives = 338/387 (87%), Gaps = 1/387 (0%)
Query: 570 EDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRER 629
+DRR+IERDFF GKL G+AATNALELGIDVGHID TLHLGFPGS ASLWQQAGRSGRRER
Sbjct: 6 QDRRQIERDFFSGKLSGIAATNALELGIDVGHIDATLHLGFPGSFASLWQQAGRSGRRER 65
Query: 630 PSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYD 689
PSLAVYVAF+GPLDQYFMK+P+KLF PIECCHIDAQN +VL+QHLVCAA EHPLSL++D
Sbjct: 66 PSLAVYVAFQGPLDQYFMKFPKKLFHGPIECCHIDAQNQQVLKQHLVCAAREHPLSLLHD 125
Query: 690 EKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVI 749
EKYFGS LS+ + +LKN+G LS DPS DS A+I+ YIGHEKMPS ISIRAIES RY VI
Sbjct: 126 EKYFGSSLSNALMSLKNKGDLSFDPSRDSFARIWSYIGHEKMPSRGISIRAIESTRYRVI 185
Query: 750 DMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRD 809
DMQ NEVLEEIEESKAFFQ+YEGAVYMHQG TY+VK+L++S KIALC +A+L Y+TKTRD
Sbjct: 186 DMQRNEVLEEIEESKAFFQIYEGAVYMHQGKTYMVKKLDISEKIALCYEANLHYYTKTRD 245
Query: 810 YTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLP 869
YTDI V GG+ AY + K+Q ++T AQAL+C VTTTWFGFY + RGS + DT +L LP
Sbjct: 246 YTDIDVLGGDIAYPPRAFKNQSSRTAAQALSCKVTTTWFGFYCIQRGSNKVLDTFDLSLP 305
Query: 870 KYSYESQAVWIQVPQSVKAVVEQ-NFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPN 928
KYSYESQAVWI VPQS+K +VE+ FSFR GLHAASHALL+VVP+Y+RCN SDLAPECPN
Sbjct: 306 KYSYESQAVWIPVPQSIKKLVEEKQFSFRGGLHAASHALLNVVPLYLRCNSSDLAPECPN 365
Query: 929 PHDSRYFPERILLYDRHPGGTGVSKQV 955
PHDSRYFPERIL+YD+HPGGTGVS Q+
Sbjct: 366 PHDSRYFPERILVYDQHPGGTGVSMQI 392
>gi|308804776|ref|XP_003079700.1| putative ATP-dependent RNA helicase (ISS) [Ostreococcus tauri]
gi|116058157|emb|CAL53346.1| putative ATP-dependent RNA helicase (ISS), partial [Ostreococcus
tauri]
Length = 1194
Score = 629 bits (1623), Expect = e-177, Method: Compositional matrix adjust.
Identities = 353/815 (43%), Positives = 489/815 (60%), Gaps = 98/815 (12%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDA--LLDNTKSALKSTGI-----SKLY 257
E V HLR+ + S GQ+VHVE + A+ AV + ++ L D T +A K GI S+L+
Sbjct: 388 EFVGHLRETLASSGQIVHVETMEAKPAVRATLSESVSLSDATIAAFKG-GIGLDLKSRLF 446
Query: 258 SHQAESIMASLAG----KNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALA 313
SHQA +I + L K+V+V++ T+SGKS+CYN+PV++ L D +++ALYMFPTKALA
Sbjct: 447 SHQASAIESILGETTPRKHVIVSSGTASGKSVCYNVPVVDTLLADPNATALYMFPTKALA 506
Query: 314 QDQLRAL---LA-MTKAFDASIDIGVYDGDTTQKD-RMWLRDNARLLITNPDMLHMSILP 368
QDQLRAL LA + K+ + IG+YDGD K+ R +R + RL+ITNPDMLH+SILP
Sbjct: 507 QDQLRALRIILANVPKSEETVFGIGIYDGDVRSKEARAEVRSSDRLIITNPDMLHVSILP 566
Query: 369 YHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRL 428
H Q+ R LS LR +V+IDEAHAY G FG H ALI+RRL RL
Sbjct: 567 SHKQWVRFLSGLR-------------------YVIIDEAHAYSGVFGSHVALIVRRLRRL 607
Query: 429 CSHVYGSDPSFVFSTATSANPREHCMELANL-------STLELIQNDGSPCAQKLFVLWN 481
CS +YGS P F+ S+AT ANP +H +L T+E + NDG+P K F+LWN
Sbjct: 608 CSELYGSSPQFIISSATVANPLDHARDLIGFHGVRPDEDTIETVTNDGAPRGVKTFLLWN 667
Query: 482 P-------------------TSCLR------------SVLNKSQTDMDD--TRNAANKTS 508
P TS R S L +++D + +
Sbjct: 668 PALKPGQSHQTNTERKFRRVTSIERGKAALAKKLRETSTLVDVPAEVEDIIVADVEGART 727
Query: 509 SPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYV 568
SP+ E+S + AE VQH LRC+AFC++RKLCELVL YTREIL +APHL D + YR GY
Sbjct: 728 SPVVEISQILAECVQHNLRCLAFCKTRKLCELVLVYTREILRSSAPHLADKVASYRGGYE 787
Query: 569 AEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRE 628
A +RR IE++ F G L GVA TNALELGIDVG +DVTLHLGFPGS+ASLWQQAGR+GRRE
Sbjct: 788 AGERRVIEKELFSGVLLGVATTNALELGIDVGSLDVTLHLGFPGSVASLWQQAGRAGRRE 847
Query: 629 RPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL--SL 686
+L+VYV F+GPLDQ+FM+ P LF +P E ++ AQN ++ QH++CAA E PL +
Sbjct: 848 GRALSVYVGFDGPLDQHFMRQPRALFDAPHEFSYVWAQNPTIVAQHMLCAAFERPLFANP 907
Query: 687 IYDEKYFGSGLSSGITTLKNRGYLSSDP----SLDSSAKIFEYI--GHEKMPSHTISIRA 740
DE YFGS + + +G L+ DP + + +AKI + + +K P+ +S+R
Sbjct: 908 GVDEVYFGSTAREVASQMVAKGRLTVDPGSFVAWNPAAKIAQPLLACTDKSPALDVSVRT 967
Query: 741 IESERYEVIDMQSN--EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQK 798
IE E ++V+D+ ++ +++ +E SKAFF+VYEGAVY HQG T L +L+L + A +
Sbjct: 968 IEEEHFDVVDVSTSREKIIASVEASKAFFEVYEGAVYTHQGRTLLCTKLDLERRRAHVRM 1027
Query: 799 ADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALAC---TVTTTWFGFYRLWR 855
AD+KYFT+ + T V GG Y + + +Q + C ++T + GF R+ R
Sbjct: 1028 ADVKYFTRVKHETTCSVPGGMRVYG----ETDTSLPMSQCVKCDEVNISTVFTGFSRVAR 1083
Query: 856 GSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYV 915
GS FD V + + W+++P + + + R+G+HAASHA+L+ +P+ V
Sbjct: 1084 GSQAKFDHVSFPPRSTEFHTVGAWLRIPDDIVSKASETVDLRAGVHAASHAVLNALPLRV 1143
Query: 916 RCNFSDLAPECPNP-----HDSRYFPERILLYDRH 945
C +D+ EC + RY P R L+YDRH
Sbjct: 1144 PCGENDVGCECFSADLHAERGRRYKPLRFLIYDRH 1178
>gi|303280309|ref|XP_003059447.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459283|gb|EEH56579.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 711
Score = 601 bits (1549), Expect = e-169, Method: Compositional matrix adjust.
Identities = 325/739 (43%), Positives = 450/739 (60%), Gaps = 88/739 (11%)
Query: 256 LYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQD 315
L+SHQ + A+LA +NVVVAT T+SGKS+CYN PVL+AL+ D +++ALY+FPTKALAQD
Sbjct: 8 LFSHQHFGVAAALARRNVVVATGTASGKSVCYNAPVLQALTSDAAATALYLFPTKALAQD 67
Query: 316 QLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSR 375
QLRAL M +A A+ GVYDGDT+ +R + RL+ITNPDMLH+++LP H ++
Sbjct: 68 QLRALRVMLRAAAAA---GVYDGDTSDAERARIEREDRLVITNPDMLHVNVLPNHRKWRA 124
Query: 376 ILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGS 435
+L+ LR +VVIDEAHAY+G FG H AL++RRL RLC +YG
Sbjct: 125 MLTGLR-------------------YVVIDEAHAYRGVFGSHVALVIRRLRRLCRELYGG 165
Query: 436 DPSFVFSTATSANPREHCMELANLSTLE--------------------------LIQNDG 469
+P+F+ ++AT A P H +L + ++ +DG
Sbjct: 166 EPTFIVTSATIAAPGNHARDLVGAFPIAAGGGGGGGGDGGGGDDDDDDEPHGWVVVDDDG 225
Query: 470 SPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCI 529
SPC +K F++WNP L + + +SP+ E+S L AE V+H L+CI
Sbjct: 226 SPCGEKTFLMWNPPGTL------------GVYGSGPRRTSPVVEISALLAECVRHDLKCI 273
Query: 530 AFCRSRKLCELVLSYTREILEET-APHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVA 588
AFC+++KLCELVL YTRE L T AP L S+ YR GY + DRR IE+ F G + GVA
Sbjct: 274 AFCKTKKLCELVLKYTREALASTGAPSLCGSVLAYRGGYSSVDRRAIEKALFSGSVRGVA 333
Query: 589 ATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMK 648
ATNALELG+DVG +DVTLHLGFPG++ASL QQAGR+GRR + +L+VYVAF+GPLDQ+FM+
Sbjct: 334 ATNALELGVDVGALDVTLHLGFPGTVASLIQQAGRAGRRGKRALSVYVAFDGPLDQHFMR 393
Query: 649 YPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRG 708
P KLF PIE ID N V+E H+ CA+ E PL D + L L+ R
Sbjct: 394 SPAKLFGRPIERAAIDPCNPSVMEAHVACASHEMPL----DPRV---ALEVVCDRLRERR 446
Query: 709 YLSSDPSLDSSAKI-----FEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEES 763
+ D SL K + G P++ +S+RAIE ERY ++D ++ E +EE+E S
Sbjct: 447 LVVPDASLLGEWKASLDVRLRWCGASP-PANGVSVRAIEEERYRIVDERTGECVEEVERS 505
Query: 764 KAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYA 823
KAF++VY GAVYM+Q T+L L++ A+ + AD+KYFTK D T +
Sbjct: 506 KAFWEVYPGAVYMNQARTFLCVSLDVKKLTAVVRLADVKYFTKMVDKTTV---------- 555
Query: 824 TKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVEL--YLPKYSYESQAVWIQ 881
T ++ T +AQ+ V T+FG+ ++W SG FDTV L LP SY + A W++
Sbjct: 556 TTLANASTTVASAQSARAEVAVTFFGYRKIWHASGTCFDTVPLRETLPDVSYTTIAAWVR 615
Query: 882 VPQSVKAV-VEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNP-HDSRYFPERI 939
VP + + + FR+G+HAA+HA+++ +P+YV + SD+ EC NP HD Y R+
Sbjct: 616 VPDVARRMCADAGVEFRAGVHAATHAVINALPLYVMADASDVGAECDNPHHDGHYRASRL 675
Query: 940 LLYDRHPGGTGVSKQVTDM 958
L+YDRHPGG G+++Q +
Sbjct: 676 LIYDRHPGGVGIARQAAGL 694
>gi|73748734|ref|YP_307973.1| ATP-dependent RNA helicase, DEAD [Dehalococcoides sp. CBDB1]
gi|73660450|emb|CAI83057.1| ATP-dependent RNA helicase, DEAD [Dehalococcoides sp. CBDB1]
Length = 764
Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust.
Identities = 292/755 (38%), Positives = 440/755 (58%), Gaps = 83/755 (10%)
Query: 217 QGQMVHVEDISARKAVLVEIPDA-LLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVV 275
Q Q+ H+E + R A + PDA LL + L+ I LY+HQA ++ GKN++V
Sbjct: 17 QEQIAHIERLPYRPAEYAK-PDAPLLPQIDARLRKKRILPLYTHQATAVNLCRQGKNIIV 75
Query: 276 ATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAM-TKAFDASIDIG 334
AT +SGKSLCYNLPVLE L D ++ ALY++PTKALAQDQLR+L + + + ++
Sbjct: 76 ATPAASGKSLCYNLPVLEKLVSDPNARALYLYPTKALAQDQLRSLKSFAVPSLLLAEEMD 135
Query: 335 VYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYL 394
VYDGDT ++R +R AR++++NPDMLH+SILP H ++SR L +L
Sbjct: 136 VYDGDTPNRNRSDIRLQARIILSNPDMLHVSILPSHQKWSRFLRHLE------------- 182
Query: 395 IFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCM 454
+VVIDEAH Y+G FG H A I+RRL R+CS+ YGS P F+ S+AT A+P H
Sbjct: 183 ------YVVIDEAHIYRGVFGSHLANIIRRLRRICSY-YGSSPKFILSSATIASPGTHAQ 235
Query: 455 ELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEV 514
L L ++ NDG+P A+K F+ WNP +++ + + R++AN SE
Sbjct: 236 SLTGLP-FSVVDNDGAPRAEKDFIFWNP-----PIIDPA----NGMRHSAN------SES 279
Query: 515 SYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRR 574
++L +E+V H +R + F R+++L EL+ Y+R+ L P D I YR GY AEDRR+
Sbjct: 280 AFLLSELVSHEIRTLDFARTKRLTELIYKYSRDRLIAIKPEFADLIKPYRGGYTAEDRRK 339
Query: 575 IERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAV 634
IE++ F GKL G +TNALELG+D+G + ++ GFPGSI+S +QQAGRSGRR SL+
Sbjct: 340 IEKELFSGKLLGAVSTNALELGVDIGDLGASILTGFPGSISSTFQQAGRSGRRCGHSLSF 399
Query: 635 YVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFG 694
+ + PLDQY+M PE+LF S E I+ +N + + HL+CAA E PL+ + FG
Sbjct: 400 LLGLDNPLDQYYMNNPERLFNSGFESTFINPENPYIYKAHLLCAAWEMPLNE-SETDIFG 458
Query: 695 SGLSSGITTL-------KNRG--YLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESER 745
L+ + L K RG Y+S+D S P+ +SIR+ +
Sbjct: 459 ENLAEELEILSEERVLNKRRGNYYISADIS---------------YPARDVSIRSASGKD 503
Query: 746 YEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFT 805
+ ++D QS +++E ++ AF Q Y GAVY+HQG +YLV +L+S++AL +K L+Y+T
Sbjct: 504 FCLVDAQSGQIIETLDYQTAFLQTYPGAVYLHQGESYLVSSFDLNSQVALLEKKKLEYYT 563
Query: 806 KTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALA-CTVTTTWFGFYRLWRGSGIIFDTV 864
T D T+I + ++ K++L + L VT T G+ R + + I
Sbjct: 564 VTHDLTEISIR--------EVLKNKLVGDISVYLGKVDVTLTVTGYRRKAQFTEQILSEE 615
Query: 865 ELYLPKYSYESQAVWIQVP-QSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLA 923
+L LP ++ + AVW ++P ++V+ + + F +HAA HAL+ ++P++ C+ SD+
Sbjct: 616 QLDLPPQTFPTIAVWFKLPAETVRIMEKYKMDFHGAIHAAEHALIGLLPLFALCDRSDIG 675
Query: 924 ----PECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
P P+ S F +YD HPGG G++++
Sbjct: 676 GVSTPLHPDTGTSAIF-----IYDGHPGGVGIAEK 705
>gi|147669500|ref|YP_001214318.1| DEAD/DEAH box helicase [Dehalococcoides sp. BAV1]
gi|452205214|ref|YP_007485343.1| ATP-dependent RNA helicase, DEAD-DEAH box family [Dehalococcoides
mccartyi BTF08]
gi|146270448|gb|ABQ17440.1| DEAD/DEAH box helicase domain protein [Dehalococcoides sp. BAV1]
gi|452112270|gb|AGG08001.1| ATP-dependent RNA helicase, DEAD-DEAH box family [Dehalococcoides
mccartyi BTF08]
Length = 764
Score = 507 bits (1306), Expect = e-140, Method: Compositional matrix adjust.
Identities = 292/756 (38%), Positives = 439/756 (58%), Gaps = 85/756 (11%)
Query: 217 QGQMVHVEDISARKAVLVEIPDA-LLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVV 275
Q Q+ H+E + R A + PDA LL + L+ I LY+HQ ++ GKN++V
Sbjct: 17 QEQIAHIERLPYRPAEYAK-PDAPLLPQIDARLRKKRILPLYTHQVTAVNLCRQGKNIIV 75
Query: 276 ATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAM-TKAFDASIDIG 334
AT +SGKSLCYNLPVLE L D ++ ALY++PTKALAQDQLR+L + + + ++
Sbjct: 76 ATPAASGKSLCYNLPVLEKLVSDPNARALYLYPTKALAQDQLRSLKSFAVPSLLLAEEMD 135
Query: 335 VYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYL 394
VYDGDT ++R +R AR++++NPDMLH+SILP H ++SR L +L
Sbjct: 136 VYDGDTPNRNRSDIRLQARIILSNPDMLHVSILPSHQKWSRFLRHLE------------- 182
Query: 395 IFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCM 454
+VVIDEAH Y+G FG H A I+RRL R+CS+ YGS P F+ S+AT A+P H
Sbjct: 183 ------YVVIDEAHIYRGVFGSHLANIIRRLRRICSY-YGSSPKFILSSATIASPGTHAQ 235
Query: 455 ELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEV 514
L L ++ NDG+P A+K F+ WNP +++ + + R++AN SE
Sbjct: 236 SLTGLP-FSVVDNDGAPRAEKDFIFWNP-----PIIDPA----NGMRHSAN------SES 279
Query: 515 SYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRR 574
++L +E+V H +R + F R+++L EL+ Y+R+ L P D I YR GY AEDRR+
Sbjct: 280 AFLLSELVSHEIRTLDFARTKRLTELIYKYSRDRLIAIKPEFADLIKPYRGGYTAEDRRK 339
Query: 575 IERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAV 634
IE++ F GKL G +TNALELG+D+G + ++ GFPGSI+S +QQAGRSGRR SL+
Sbjct: 340 IEKELFSGKLLGAVSTNALELGVDIGDLGASILTGFPGSISSTFQQAGRSGRRCGHSLSF 399
Query: 635 YVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDE-KYF 693
+ + PLDQY+M PE+LF S E I+ +N + + HL+CAA E +SL E F
Sbjct: 400 LLGLDNPLDQYYMNNPERLFNSGFESTFINPENPYIYKAHLLCAAWE--ISLNESETDIF 457
Query: 694 GSGLSSGITTL-------KNRG--YLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESE 744
G L+ + L K RG Y+S+D S P+ +SIR+ +
Sbjct: 458 GENLAEELEILSEERVLNKRRGNYYISADIS---------------YPARDVSIRSASGK 502
Query: 745 RYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYF 804
+ ++D QS +++E ++ AF Q Y GAVY+HQG +YLV +L+S++AL +K L+Y+
Sbjct: 503 DFCLVDAQSGQIIETLDYQTAFLQAYPGAVYLHQGESYLVSSFDLNSQVALLEKKKLEYY 562
Query: 805 TKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALA-CTVTTTWFGFYRLWRGSGIIFDT 863
T T D T+I + ++ K++L + L VT T G+ R + + I
Sbjct: 563 TVTHDLTEISIR--------EVLKNKLVGDISVYLGKVDVTLTVTGYRRKAQFTEQILSE 614
Query: 864 VELYLPKYSYESQAVWIQVP-QSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDL 922
+L LP ++ + AVW ++P ++V+ + + F +HAA HAL+ ++P++ C+ SD+
Sbjct: 615 EQLDLPPQTFPTIAVWFKLPAETVRIMEKYKMDFHGAIHAAEHALIGLLPLFALCDRSDI 674
Query: 923 A----PECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
P P+ S F +YD HPGG G++++
Sbjct: 675 GGVSTPRHPDTGTSAIF-----IYDGHPGGVGIAEK 705
>gi|289432760|ref|YP_003462633.1| hypothetical protein DehalGT_0811 [Dehalococcoides sp. GT]
gi|452203720|ref|YP_007483853.1| ATP-dependent RNA helicase, DEAD-DEAH box family [Dehalococcoides
mccartyi DCMB5]
gi|288946480|gb|ADC74177.1| Protein of unknown function DUF1998 [Dehalococcoides sp. GT]
gi|452110779|gb|AGG06511.1| ATP-dependent RNA helicase, DEAD-DEAH box family [Dehalococcoides
mccartyi DCMB5]
Length = 764
Score = 506 bits (1303), Expect = e-140, Method: Compositional matrix adjust.
Identities = 288/751 (38%), Positives = 435/751 (57%), Gaps = 75/751 (9%)
Query: 217 QGQMVHVEDISARKAVLVEIPDA-LLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVV 275
Q Q+ H+E + R A + PDA LL + L+ I LY+HQ ++ GKN++V
Sbjct: 17 QEQIAHIERLPYRPAEYAK-PDAPLLPQIDARLRKKRILPLYTHQVTAVNLCRQGKNIIV 75
Query: 276 ATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAM-TKAFDASIDIG 334
AT +SGKSLCYNLPVLE L D ++ ALY++PTKALAQDQLR+L + + + ++
Sbjct: 76 ATPAASGKSLCYNLPVLEKLVSDPNARALYLYPTKALAQDQLRSLKSFAVPSLLLAEEMD 135
Query: 335 VYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYL 394
VYDGDT ++R +R AR++++NPDMLH+SILP H ++SR L +L
Sbjct: 136 VYDGDTPNRNRSDIRLQARIILSNPDMLHVSILPSHQKWSRFLRHLE------------- 182
Query: 395 IFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCM 454
+VVIDEAH Y+G FG H A I+RRL R+CS+ YGS P F+ S+AT A+P H
Sbjct: 183 ------YVVIDEAHIYRGVFGSHLANIIRRLRRICSY-YGSSPKFILSSATIASPGTHAQ 235
Query: 455 ELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEV 514
L L ++ NDG+P A+K F+ WNP +++ + + R++AN SE
Sbjct: 236 SLTGLP-FSVVDNDGAPRAEKDFIFWNP-----PIIDPA----NGMRHSAN------SES 279
Query: 515 SYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRR 574
++L +E+V H +R + F R+++L EL+ Y+R+ L P D I YR GY AEDRR+
Sbjct: 280 AFLLSELVSHEIRTLDFARTKRLTELIYKYSRDRLIAIKPEFADLIKPYRGGYTAEDRRK 339
Query: 575 IERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAV 634
IE++ F GKL G +TNALELG+D+G + ++ GFPGSI+S +QQAGRSGRR SL+
Sbjct: 340 IEKELFSGKLLGAVSTNALELGVDIGDLGASILTGFPGSISSTFQQAGRSGRRCGHSLSF 399
Query: 635 YVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFG 694
+ + PLDQY+M PE+LF S E I+ +N + + HL+CAA E PL+ + FG
Sbjct: 400 LLGLDNPLDQYYMNNPERLFNSGFESTFINPENPYIYKVHLLCAAWEMPLNE-SETDIFG 458
Query: 695 SGLSSGITTL-------KNRG--YLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESER 745
L+ + L RG Y+S+D S P+ +SIR+ +
Sbjct: 459 ENLAEELEILSEERVLNNRRGNYYISADIS---------------YPARDVSIRSASGKD 503
Query: 746 YEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFT 805
+ ++D QS +++E ++ AF Q Y GAVY+HQG +YLV +L+S++AL +K L+Y+T
Sbjct: 504 FCLVDAQSGQIIETLDYQTAFLQTYPGAVYLHQGESYLVSSFDLNSQVALLEKKKLEYYT 563
Query: 806 KTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALA-CTVTTTWFGFYRLWRGSGIIFDTV 864
T D T+I + ++ K++L + L VT T G+ R + + I
Sbjct: 564 VTHDLTEISIR--------EVLKNKLVGDISVYLGKVDVTLTVTGYRRKAQFTEQILSEE 615
Query: 865 ELYLPKYSYESQAVWIQVP-QSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLA 923
+L LP ++ + AVW ++P ++V+ + + F +HAA HAL+ ++P++ C+ SD+
Sbjct: 616 QLDLPPQTFPTIAVWFKLPAETVRIMEKYKMDFHGAIHAAEHALIGLLPLFALCDRSDIG 675
Query: 924 PECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
P I +YD HPGG G++++
Sbjct: 676 -GVSTPLHLDTGTSAIFIYDGHPGGVGIAEK 705
>gi|270308238|ref|YP_003330296.1| DEAD/DEAH box family ATP-dependent RNA helicase [Dehalococcoides
sp. VS]
gi|270154130|gb|ACZ61968.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Dehalococcoides
sp. VS]
Length = 764
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 287/742 (38%), Positives = 423/742 (57%), Gaps = 57/742 (7%)
Query: 217 QGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVA 276
Q Q+ H+E + R A LL + L+ I LY+HQA +I S GKN++VA
Sbjct: 17 QEQIAHIERLPYRPAEYARTDAPLLPRIDARLRKKRILPLYTHQANAINFSRQGKNIIVA 76
Query: 277 TMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAM-TKAFDASIDIGV 335
T +SGKSLCYNLPVLE L D ++ ALY++P KALAQDQLR+L ++ + A +I V
Sbjct: 77 TPAASGKSLCYNLPVLEKLLSDPNARALYLYPAKALAQDQLRSLKSLAVPSLLADEEIAV 136
Query: 336 YDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLI 395
YDGDT R +R AR++++NPDMLH+SILP+H ++ R L +L
Sbjct: 137 YDGDTPGNSRADIRLKARIILSNPDMLHVSILPFHQKWGRFLRHLE-------------- 182
Query: 396 FLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCME 455
+VVIDEAH Y+G FG H A + R R YGS P F+ S+AT A+P H
Sbjct: 183 -----YVVIDEAHIYRGVFGSHLA-NIIRRLRRLCRYYGSSPQFILSSATIASPGVHAQS 236
Query: 456 LANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVS 515
L L ++ NDG+P ++K FV WNP +++ + + R++AN SE S
Sbjct: 237 LTGLP-FSVVDNDGAPRSEKDFVFWNP-----PIIDPA----NGIRHSAN------SESS 280
Query: 516 YLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRI 575
+L +E+V H +R + F R+++L EL+ Y+R+ L P D I YR GY AEDRR+I
Sbjct: 281 FLLSELVSHEIRTLDFARTKRLTELIYKYSRDRLIAIKPEFADLIKPYRGGYTAEDRRKI 340
Query: 576 ERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVY 635
E++ F G+L G +TNALELGID+G + T+ GFPGSI+S +QQAGRSGRR SL+
Sbjct: 341 EKELFSGRLLGAVSTNALELGIDIGDLGATILTGFPGSISSTFQQAGRSGRRCGHSLSFL 400
Query: 636 VAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGS 695
+ + PLDQY+M PEKLF S E I+++N + HL+CAA E P++ + FG+
Sbjct: 401 LGLDNPLDQYYMNNPEKLFNSGFEGTFINSENSYIYRVHLLCAAWEMPVN-ASETDMFGA 459
Query: 696 GLSSGITTLKNRGYLSS-DPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN 754
L + TL L+ + SA I+ P+ ISIR+ + + +ID +S
Sbjct: 460 DLIEELDTLAQERVLNKRRDNYYLSADIY-------YPAGDISIRSASGKDFCLIDAESG 512
Query: 755 EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIH 814
+++E ++ AF Q Y GAVY+HQG +YLV +L+S+IAL +K L Y+T TRD T+I
Sbjct: 513 QIIETLDFQTAFLQAYPGAVYLHQGESYLVSRFDLNSQIALLEKKKLDYYTVTRDLTEIS 572
Query: 815 VSGGNNAYATKISKDQLTKTTAQALA-CTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSY 873
+ ++ K++L + L VT T G+ R + + + +L LP ++
Sbjct: 573 I--------IEVLKNKLVGDISVYLGKVDVTLTITGYRRKAQFTEQVLSEEQLDLPPQTF 624
Query: 874 ESQAVWIQVPQSVKAVVEQN-FSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDS 932
+ AVW ++P + A +E+ F +HAA HAL+ ++P++ C+ D+ H
Sbjct: 625 PTIAVWFKLPSDIAASMEKTKMDFHGAIHAAEHALIGLLPLFALCDRGDIGGVSTPLHSD 684
Query: 933 RYFPERILLYDRHPGGTGVSKQ 954
P I +YD HPGG G++++
Sbjct: 685 TGTPA-IFIYDGHPGGVGIAEK 705
>gi|402223754|gb|EJU03818.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dacryopinax sp. DJM-731 SS1]
Length = 1081
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 308/886 (34%), Positives = 472/886 (53%), Gaps = 94/886 (10%)
Query: 104 KVEDNLG--SGQKAISLSKIFNAMKKRERSFKTNLWEAVNLLMCKLQKRVMSLSVEDLLT 161
K+++ G S A++ ++ ++KR +SF AVN L+ + + +D +
Sbjct: 169 KIKEAAGKFSAPPALTQQQLMKLIEKRSQSFT----RAVNELLA-----ACAANGDDPVR 219
Query: 162 YVKER-RTDVRGNEVKRAR-----RSQSSTSSSHSFQRRCSDKSQLLPLE-MVEHLRKGI 214
V++ R V + +KR R +S+ S S+ + D LP++ +++ L +
Sbjct: 220 LVQDAARAHVPVHPLKRTRPNDVQEEESANSGSNQPPKVVPDPQLRLPIDTIIKRLTEDE 279
Query: 215 GSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKST-GISKLYSHQAESIMASLAGKNV 273
+GQ+V + A+ AV + L K AL S + YSHQA ++ A GKNV
Sbjct: 280 HYKGQIVKRREFQAKDAVWGRLNRTLSPAIKEALLSARKVEGFYSHQAAALNAIWDGKNV 339
Query: 274 VVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQL---RALLAMTKAFDAS 330
VV+T T+SGKS+ Y +P L L D SS+A++++PTKALAQDQL + LL +
Sbjct: 340 VVSTSTASGKSVIYQVPALCNLEEDKSSTAIFIYPTKALAQDQLTGLQQLLVRVHGLEG- 398
Query: 331 IDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTT 390
I I YDGDT + R +R+NA ++ TN D LH SILP + L NL++
Sbjct: 399 IMIAAYDGDTPKDRRQNIRENASIIFTNFDTLHASILPNEDTWRHFLRNLKM-------- 450
Query: 391 EVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPR 450
VV+DE H Y G G + + RRL RLC+ V FV +AT +PR
Sbjct: 451 -----------VVVDELHYYSGLMGTQVSFVARRLRRLCAAVGNRRCVFVSCSATINDPR 499
Query: 451 EHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSP 510
H M + + +E+I +DG+P K F+LWNP +D+ A ++SS
Sbjct: 500 GHMMNIFGVDDVEVITDDGAPTGHKDFLLWNPPF------------LDEMDPALGRSSS- 546
Query: 511 ISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTR-EILEETAPHLVDSICVYRAGYVA 569
+ E YLF +++HG+R I FC+ R+ CELV+ R ++ E ++D + YR GY
Sbjct: 547 MQEACYLFRYLMKHGVRTILFCKIRRTCELVMKSIRHQLTAEGRQDILDRVSAYRGGYSV 606
Query: 570 EDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRER 629
DRRRIE+D F G L G+ ATNALELG+D+G +D + LGFP IASL QQAGR+GRR R
Sbjct: 607 ADRRRIEKDAFSGHLLGIIATNALELGVDIGTLDAVIMLGFPFGIASLRQQAGRAGRRAR 666
Query: 630 PSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYD 689
SLA+ V P+DQ++M P+++F+ P E +D N VLE HL CAA E P+ L D
Sbjct: 667 DSLAILVGDSLPIDQHYMLNPDEVFEKPTEPLIVDITNEGVLESHLQCAADELPIRLQDD 726
Query: 690 EKYFGSGLSSGITT---LKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERY 746
KYFG + G+ ++ PS ++ P+ +S+R I+ ++Y
Sbjct: 727 GKYFGPCFEEVCKSRLICDKEGWYTTHPS------------YKPRPTMMVSLRGIQEDKY 774
Query: 747 EVIDMQSNE-------VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKA 799
VID+ + + VLEEIE S+A F+ YEG ++MHQG T+LV+E++ ++IA +A
Sbjct: 775 TVIDITTQDEQHGAARVLEEIELSRAIFETYEGGIFMHQGLTFLVREVDHDTRIAKIARA 834
Query: 800 DLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGI 859
D+ Y+TK RD+TD+ S Y + KD ++ + T FGF+++ +
Sbjct: 835 DVNYYTKPRDFTDVDPS---QTYRIREIKDSQQRSYFGRI--VRKTVVFGFFKMRETT-- 887
Query: 860 IFDTVELYLPKYSYESQAVWIQVPQ-SVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCN 918
I DTV+L P + S WI VP+ ++ +++++ + +HAA HA+L ++P++V
Sbjct: 888 ILDTVDLDSPPFIRSSTGFWIDVPRPTLNLLIDKDINPAEAIHAACHAVLSILPVFVLTA 947
Query: 919 FSDLAPECPNPH-------DSRYFPERILLYDRHPGGTGVSKQVTD 957
D+ EC P R P R++ YD +G+ +V D
Sbjct: 948 LGDVGTECKAPQKEYMQKESQRKRPARLIFYD-GTAASGICAKVYD 992
>gi|57234222|ref|YP_181690.1| DEAD/DEAH box helicase [Dehalococcoides ethenogenes 195]
gi|57224670|gb|AAW39727.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Dehalococcoides
ethenogenes 195]
Length = 764
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 287/750 (38%), Positives = 420/750 (56%), Gaps = 73/750 (9%)
Query: 217 QGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVA 276
Q Q+ H+E + R A LL + L+ I LY+HQA ++ S GKN++VA
Sbjct: 17 QEQIAHIERLPYRPAEYARTDAPLLPRIDARLRKKRILPLYTHQANAVNLSRQGKNIIVA 76
Query: 277 TMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT-KAFDASIDIGV 335
T +SGKSLCYNLPVLE L D ++ ALY++P KALAQDQLR+L ++ + A +I V
Sbjct: 77 TPAASGKSLCYNLPVLEKLLSDPNARALYLYPAKALAQDQLRSLKSLAVPSLLADEEIAV 136
Query: 336 YDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLI 395
YDGDT R +R AR++++NPDMLH+SILP H ++ R L +L
Sbjct: 137 YDGDTPGNSRADIRLKARIILSNPDMLHVSILPSHQKWGRFLRHLE-------------- 182
Query: 396 FLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCME 455
+VVIDEAH Y+G FG H A + R R YGS P F+ S+AT A+P H
Sbjct: 183 -----YVVIDEAHIYRGVFGSHLA-NIIRRLRRLCRYYGSSPQFILSSATIASPGVHAQS 236
Query: 456 LANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVS 515
L L ++ NDG+P ++K FV WNP +++ + + R++AN SE S
Sbjct: 237 LTGLP-FSVVDNDGAPRSEKDFVFWNP-----PIIDPA----NGIRHSAN------SESS 280
Query: 516 YLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRI 575
+L +E+V H +R + F R+++L EL+ Y+R+ L P D I YR GY AEDRR+I
Sbjct: 281 FLLSELVSHEIRTLDFTRTKRLTELIYKYSRDRLIAIKPEFADLIKPYRGGYTAEDRRKI 340
Query: 576 ERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVY 635
E++ F G+L G +TNALELGID+G + T+ GFPGSI+S +QQAGRSGRR SL+
Sbjct: 341 EKELFSGRLLGAVSTNALELGIDIGDLGATILTGFPGSISSTFQQAGRSGRRCGHSLSFL 400
Query: 636 VAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGS 695
+ + PLDQY+M PEKLF S E I+ +N + HL+CAA E P++ + FG
Sbjct: 401 LGLDNPLDQYYMNNPEKLFNSGFEGTFINPENPYIYRVHLLCAAWEMPVN-ASETDMFGE 459
Query: 696 GLSSGITTL---------KNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERY 746
L + TL ++ YLS+D S P+ ISIR+ + +
Sbjct: 460 NLIEELDTLAQERVLNKRRDNYYLSADIS---------------YPAGDISIRSASGKDF 504
Query: 747 EVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTK 806
+ID +S +++E ++ AF Q Y GAVY+HQG +YLV +L+S+IAL +K L Y+T
Sbjct: 505 CLIDAESGQIIETLDFQTAFLQAYPGAVYLHQGESYLVSRFDLNSQIALLEKKKLDYYTV 564
Query: 807 TRDYTDIHVSGGNNAYATKISKDQLTKTTAQALA-CTVTTTWFGFYRLWRGSGIIFDTVE 865
TRD T+I + ++ K++L + L VT T G+ R + + + +
Sbjct: 565 TRDLTEISI--------IEVLKNKLVGDISVYLGKVDVTLTVTGYRRKAQFTEQVLSEEQ 616
Query: 866 LYLPKYSYESQAVWIQVPQS-VKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAP 924
L LP ++ + AVW ++P V A+ + F +HAA HAL+ ++P++ C+ D+
Sbjct: 617 LDLPPQTFPTIAVWFKLPSDIVSAMGKTKMDFHGAIHAAEHALIGLLPLFALCDRGDIGG 676
Query: 925 ECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
H P I +YD HPGG G++++
Sbjct: 677 VSTPLHPDTGTPA-IFIYDGHPGGVGIAEK 705
>gi|226289558|gb|EEH45042.1| DEAD/DEAH box helicase [Paracoccidioides brasiliensis Pb18]
Length = 1205
Score = 476 bits (1226), Expect = e-131, Method: Compositional matrix adjust.
Identities = 320/981 (32%), Positives = 493/981 (50%), Gaps = 128/981 (13%)
Query: 43 LSHVKGALNQLEKFGVRVGIEDIENLAVLCPKVVQFANDD---------MESKNHDDSIV 93
++K A+ + + G R+ +ED+ + VL P+ V+F + D E+K +
Sbjct: 150 FDNIKAAV-EAQTGGRRLSVEDVARVKVLIPRSVRFESVDRGVIDLVGVKEAKTTRGGKM 208
Query: 94 IINVSTE----ERDKVEDNLGSGQKAISLSKIFNA------------MKKRERSFKTNLW 137
+ E + D E G+K + L + + K +E + ++
Sbjct: 209 WRDWEAEGMGQDSDTNEGAAHHGEKEVLLFEFVDGELKKEIQQPTSRKKSKEEDLRMPVY 268
Query: 138 EAVNLL-MCKLQKRVMSLSVEDLLTYVKERRTD-VRGNEVKRAR------RSQSSTSSSH 189
+++ + + + R + +V+ L K D V E + + RS ST +
Sbjct: 269 SQKHMMGLIEKRNRKFADAVDAFLVKCKGEDIDPVEKLEADKEKFMPEIARSGKSTPTIA 328
Query: 190 SFQRRCSDKSQLLPLEMVEHLRKGIGSQGQMVHVED--ISARKAVLVEIPDALLDNTKSA 247
+ + Q + E+V ++++ GQ+V I ++ AV + AL + +A
Sbjct: 329 RLPAQIPRERQTI-AEIVANIKEMEWYTGQIVPDGHRVIDSQPAVYGNLKFALSQSLINA 387
Query: 248 LKST-GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYM 306
L +T GI++ YSHQAESI G NV+V+T TSSGKSL Y +P+L L D S +Y+
Sbjct: 388 LYNTRGITQFYSHQAESINNLHDGHNVIVSTSTSSGKSLIYQVPMLHELEQDPQSRGMYI 447
Query: 307 FPTKALAQDQ---LRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLH 363
FPTKALAQDQ L+ LL + + ++ + +DGDT +DR +RD AR++ TNPDMLH
Sbjct: 448 FPTKALAQDQRRSLKELLGYIEGLEHTL-VETFDGDTPMEDRNTIRDEARIIFTNPDMLH 506
Query: 364 MSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILR 423
++ILP+ + L NL+ FVV+DE H Y G FG H A ++R
Sbjct: 507 ITILPHESSWRTFLKNLK-------------------FVVVDELHVYNGLFGSHIAFVMR 547
Query: 424 RLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPT 483
RL R+C+ V F+ +AT ANP EH + + ++L DGSP +K F+ WN
Sbjct: 548 RLRRVCAAVGNRHVRFISCSATVANPEEHMRTIFGIDDVKLTDIDGSPSGRKEFICWN-- 605
Query: 484 SCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLS 543
T D + ++ + I E + LF +++ G+R IAFCR RK CEL+LS
Sbjct: 606 -----------TPFRDPGDPSSGRVNSIRETACLFCQLILRGVRVIAFCRIRKQCELLLS 654
Query: 544 YTR-EILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHI 602
R E P + + YR GY +DRR+IERD F GKL G+ ATNALELG+D+G +
Sbjct: 655 AVRDEFRNLDRPSVSKFVMGYRGGYSPQDRRKIERDMFEGKLLGIVATNALELGVDIGSL 714
Query: 603 DVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCH 662
D + LGFP SI++L QQ+GR+GRR + S+++ V DQY+M+ P++LF P
Sbjct: 715 DAVITLGFPYSISNLRQQSGRAGRRNKDSVSILVGDSNATDQYYMQNPDELFTKPNCELQ 774
Query: 663 IDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTL---KNRGYLSSDPSLDSS 719
+D QN VLE H+ CAA E P+ D KYFG+ L TT N G+
Sbjct: 775 VDLQNELVLEGHVQCAAFEMPIHPDEDIKYFGALLQEFATTRLIKDNLGF---------- 824
Query: 720 AKIFEYIGHEK---MPSHTISIRAIESERYEVIDMQSNE--VLEEIEESKAFFQVYEGAV 774
Y HE+ +PS ++IR Y VID +N+ V+EE+EES+ FF +YEG +
Sbjct: 825 -----YHCHERFLPLPSRCVAIRDTTDNHYAVIDTTNNQNAVIEELEESRVFFSIYEGGI 879
Query: 775 YMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKT 834
+ HQG+ YL+KELN+ + A + + + T+ RD+TD V +IS++ T
Sbjct: 880 FFHQGNPYLIKELNIDRRFARVVRVHVDWTTRQRDFTD--VDPIETEAIRRISRE--CNT 935
Query: 835 TAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVE-QN 893
A A + T +GF++L + G I D V L S+ +W+ +P+ +++ +N
Sbjct: 936 RAFFGAIKIRTLVYGFFKLDK-KGRILDAVALDSQPIETLSKGMWLDIPKKALEILKSRN 994
Query: 894 FSFRSGLHAASHALLHVVPIYVRCNFSDLAPEC------------------------PNP 929
+ + +HAA HA+L ++P Y+ D+ EC P P
Sbjct: 995 LNAAASIHAAEHAILALLPTYIISLPGDVRTECKVAIKELGPKHKQAISHARSKDVPPPP 1054
Query: 930 HDSRYFPERILLYDRHPGGTG 950
+R P R+ YD G +G
Sbjct: 1055 KPARQRPARLTFYDAKGGSSG 1075
>gi|225680342|gb|EEH18626.1| DNA helicase [Paracoccidioides brasiliensis Pb03]
Length = 1199
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 319/981 (32%), Positives = 493/981 (50%), Gaps = 128/981 (13%)
Query: 43 LSHVKGALNQLEKFGVRVGIEDIENLAVLCPKVVQFANDD---------MESKNHDDSIV 93
++K A+ + + G R+ +ED+ + VL P+ V+F + D E+K +
Sbjct: 150 FDNIKAAV-EAQTGGRRLSVEDVARVKVLIPRSVRFESVDRGVIDLVGVKEAKTTRGGKM 208
Query: 94 IINVSTE----ERDKVEDNLGSGQKAISLSKIFNA------------MKKRERSFKTNLW 137
+ E + D E G+K + L + + K +E + ++
Sbjct: 209 WRDWEAEGMGQDSDTNEGAAHHGEKEVLLFEFVDGELKKEIQQPTSRKKSKEEDLRMPVY 268
Query: 138 EAVNLL-MCKLQKRVMSLSVEDLLTYVKERRTD-VRGNEVKRAR------RSQSSTSSSH 189
+++ + + + R + +V+ L K D V E + + RS ST +
Sbjct: 269 SQKHMMGLIEKRNRKFADAVDAFLVKCKGEDIDPVEKLEADKEKFMPEIARSGKSTPTIA 328
Query: 190 SFQRRCSDKSQLLPLEMVEHLRKGIGSQGQMVHVED--ISARKAVLVEIPDALLDNTKSA 247
+ + Q + E+V ++++ GQ+V I ++ AV + AL + +A
Sbjct: 329 RLPAQIPRERQTI-AEIVANIKEMEWYTGQIVPDGHRVIDSQPAVYGNLKFALSQSLINA 387
Query: 248 LKST-GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYM 306
L +T GI++ YSHQAESI G NV+V+T TSSGKSL Y +P+L L D S +Y+
Sbjct: 388 LYNTRGITQFYSHQAESINNLHDGHNVIVSTSTSSGKSLIYQVPMLHELEQDPQSRGMYI 447
Query: 307 FPTKALAQDQ---LRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLH 363
FPTKALAQDQ L+ LL + + ++ + +DGDT +DR +RD AR++ TNPDMLH
Sbjct: 448 FPTKALAQDQRRSLKELLGYIEGLEHTL-VETFDGDTPMEDRNTIRDEARIIFTNPDMLH 506
Query: 364 MSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILR 423
++ILP+ + L NL+ FVV+DE H Y G FG H A ++R
Sbjct: 507 ITILPHESSWRTFLKNLK-------------------FVVVDELHVYNGLFGSHIAFVMR 547
Query: 424 RLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPT 483
RL R+C+ V F+ +AT ANP EH + + ++L DGSP +K F+ WN
Sbjct: 548 RLRRVCAAVGNRHVRFISCSATVANPEEHMRTIFGIDDVKLTDIDGSPSGRKEFICWN-- 605
Query: 484 SCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLS 543
T D + ++ + I E + LF +++ G+R IAFCR RK CEL+LS
Sbjct: 606 -----------TPFRDPGDPSSGRVNSIRETACLFCQLILRGVRVIAFCRIRKQCELLLS 654
Query: 544 YTR-EILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHI 602
R E P + + YR GY +DRR+IERD F GKL G+ ATNALELG+D+G +
Sbjct: 655 AVRDEFRNLDRPSVSKFVMGYRGGYSPQDRRKIERDMFEGKLLGIVATNALELGVDIGSL 714
Query: 603 DVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCH 662
D + LGFP SI++L QQ+GR+GRR + S+++ V DQY+M+ P++LF P
Sbjct: 715 DAVITLGFPYSISNLRQQSGRAGRRNKDSVSILVGDSNATDQYYMQNPDELFTKPNCELQ 774
Query: 663 IDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTL---KNRGYLSSDPSLDSS 719
+D QN VLE H+ CAA E P+ D KYFG+ L +T N G+
Sbjct: 775 VDLQNELVLEGHVQCAAFEMPIHPDEDIKYFGALLQEFASTRLIKDNLGF---------- 824
Query: 720 AKIFEYIGHEK---MPSHTISIRAIESERYEVIDMQSNE--VLEEIEESKAFFQVYEGAV 774
Y HE+ +PS ++IR Y VID +N+ V+EE+EES+ FF +YEG +
Sbjct: 825 -----YHCHERFLPLPSRCVAIRDTTDNHYAVIDTTNNQNTVIEELEESRVFFSIYEGGI 879
Query: 775 YMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKT 834
+ HQG+ YL+KELN+ + A + + + T+ RD+TD V +IS++ T
Sbjct: 880 FFHQGNPYLIKELNIDRRFARVVRVHVDWTTRQRDFTD--VDPIETEAIRRISRE--CNT 935
Query: 835 TAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVE-QN 893
A A + T +GF++L + G I D V L S+ +W+ +P+ +++ +N
Sbjct: 936 RAFFGAIKIRTLVYGFFKLDK-KGRILDAVALDSQPIETLSKGMWLDIPKKALGILKSRN 994
Query: 894 FSFRSGLHAASHALLHVVPIYVRCNFSDLAPEC------------------------PNP 929
+ + +HAA HA+L ++P Y+ D+ EC P P
Sbjct: 995 LNAAASIHAAEHAILALLPTYIISLPGDVRTECKVAIKELGPKHKQAISHARSKDVPPPP 1054
Query: 930 HDSRYFPERILLYDRHPGGTG 950
+R P R+ YD G +G
Sbjct: 1055 KPARQRPARLTFYDAKGGSSG 1075
>gi|396459305|ref|XP_003834265.1| similar to DEAD/DEAH box helicase [Leptosphaeria maculans JN3]
gi|312210814|emb|CBX90900.1| similar to DEAD/DEAH box helicase [Leptosphaeria maculans JN3]
Length = 1195
Score = 473 bits (1217), Expect = e-130, Method: Compositional matrix adjust.
Identities = 275/737 (37%), Positives = 407/737 (55%), Gaps = 73/737 (9%)
Query: 239 ALLDNTKSALKST-GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSH 297
A+ N +AL +T I++LY+HQAE+I G NV+VAT TSSGKSL Y +PVL L
Sbjct: 357 AMSQNLVNALYNTRNITQLYAHQAEAINNLHDGHNVIVATSTSSGKSLIYQIPVLHQLEQ 416
Query: 298 DLSSSALYMFPTKALAQDQ---LRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARL 354
D + A+Y+FPTKALAQDQ ++ LL F+ + + +DGDT DR ++RD AR+
Sbjct: 417 DPMTRAMYIFPTKALAQDQRKSMKELLRFMPGFE-DVLVETFDGDTPMSDRNYIRDEARI 475
Query: 355 LITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAF 414
+ TNPDMLH++ILP + L NLR FVV+DE H Y G F
Sbjct: 476 IFTNPDMLHITILPQEEAWRTFLQNLR-------------------FVVVDELHVYNGLF 516
Query: 415 GCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQ 474
G H A I+RRL R+C+ V F+ +AT ANP EH + + ++L DGSP +
Sbjct: 517 GAHMAFIMRRLRRICAAVGNRHVKFISCSATVANPEEHMKTIFGVDQVQLTDFDGSPSGR 576
Query: 475 KLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRS 534
K FV WN T D + + ++E + LF +++ G+R IAFCR
Sbjct: 577 KEFVCWN-------------TPFKDPGDPTSGRGDCMAETAKLFCQLMLRGVRSIAFCRV 623
Query: 535 RKLCELVLSYTR-EILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNAL 593
RK CE +L+ + E+ ++ + YR GY +DRR IER+ F G+LCG+ AT+AL
Sbjct: 624 RKACEALLAAIKTELTNLERTEVIPRVMSYRGGYTPQDRREIEREMFDGRLCGIVATSAL 683
Query: 594 ELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKL 653
ELG+D+G +D + +GFP +IA+L QQ+GR+GRR + SL+V V P DQY+M P+++
Sbjct: 684 ELGVDIGSLDAVVTVGFPYTIANLRQQSGRAGRRNKDSLSVLVGDCFPTDQYYMSNPDEI 743
Query: 654 FKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSD 713
F P +D N VLE HL CAA E P++L D YFG L K R
Sbjct: 744 FTKPNCALQVDLTNMLVLEGHLQCAAHELPINLETDVAYFGPFLPK---IAKER------ 794
Query: 714 PSLDSSAKIFEYIGHE--KMPSHTISIRAIESERYEVIDMQS--NEVLEEIEESKAFFQV 769
+ A+ F ++ PS T++IR E + + +ID+ + N VLEE+E S+AFF +
Sbjct: 795 --MRQDAQGFYHVNERFLPQPSRTVAIRDTEEDHFAIIDITNGKNMVLEELEASRAFFTL 852
Query: 770 YEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKD 829
Y+G +++HQG TYLVKE + S +A ++ + + T+ RDYTDI + T+ +
Sbjct: 853 YDGGIFLHQGTTYLVKEFHPSRMLAKVERVKVDWTTQQRDYTDI------DPIETEAIR- 905
Query: 830 QLTKTTAQAL--ACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVK 887
+ + +A + +GF+++ R I+ D V++ P + S+ +W+ VP +
Sbjct: 906 HIPNSPCRAFYGPIKIVQVVYGFFKIDRKRRIL-DAVQVDNPPITLFSKGLWLDVPATAM 964
Query: 888 AVVE-QNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNP-------HDSRYFPERI 939
+++ + + +G+HAA HALL + P +V D+ EC P SR P R+
Sbjct: 965 QLLQSRRLNIAAGIHAAEHALLSLFPNFVISLPGDVRTECKVPEKEFLRKQSSRIRPARL 1024
Query: 940 LLYDRH--PGGTGVSKQ 954
YD PGGTGV+ +
Sbjct: 1025 TFYDARGGPGGTGVAAK 1041
>gi|358055138|dbj|GAA98907.1| hypothetical protein E5Q_05595 [Mixia osmundae IAM 14324]
Length = 1214
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 270/753 (35%), Positives = 413/753 (54%), Gaps = 79/753 (10%)
Query: 227 SARKAVL--VEIPDALLDNTKSALKST-GISKLYSHQAESIMASLAGKNVVVATMTSSGK 283
SAR+A VE+ ++D AL +T GI+ +YSHQAE+I + G +V+V+T TSSGK
Sbjct: 391 SAREAKFGNVELSQGIMD----ALYATKGITSMYSHQAEAINHLINGSHVIVSTSTSSGK 446
Query: 284 SLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFD--ASIDIGVYDGDTT 341
SL Y +P L A D+ ++A+Y+FPTKALAQDQ RAL + + + + I +DGDT
Sbjct: 447 SLIYQVPALAAFERDIEATAMYIFPTKALAQDQKRALADLLSYCEHLSEVKIATFDGDTP 506
Query: 342 QKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRF 401
+ DR ++RD A ++ TNPDMLH+++LP+ ++ R NL+L
Sbjct: 507 KDDRNFIRDRANVIFTNPDMLHITVLPHEEEWRRFFENLKL------------------- 547
Query: 402 VVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLST 461
VV+DE H Y G FGCH A I+RRL R+C+ V FV +AT +NP EH + ++
Sbjct: 548 VVVDELHMYNGLFGCHVAFIMRRLRRVCAAVGNHRVMFVSCSATVSNPAEHMEAIFGITG 607
Query: 462 LELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEM 521
++++ DGSP +K +++WNP D S I+E S + +
Sbjct: 608 VKVVDVDGSPTGRKEYLVWNPPFI-------------DPHQITQGRVSTIAETSRIVRFL 654
Query: 522 VQHGLRCIAFCRSRKLCELVLSYTREILE-ETAPHLVDSICVYRAGYVAEDRRRIERDFF 580
+ G+R I FC+ RK+CE+V+ R L E + + YR+GY A DRR IE + F
Sbjct: 655 MDRGIRVIVFCKVRKICEVVIKQIRTDLAIEGRSDMASRVRSYRSGYTAADRREIEAEMF 714
Query: 581 GGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEG 640
G L + AT ALELGID+G +D + +GFP ++ QQAGR+GRR + SLA+ V
Sbjct: 715 NGHLLAIIATTALELGIDIGSLDAVVTVGFPYTLPGFRQQAGRAGRRNKDSLAMLVTDPW 774
Query: 641 PLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSG 700
PLDQ++ + P++LF P +D +N VLE HL CAA E P+ DE YFG+ +
Sbjct: 775 PLDQHYARNPDELFSKPDAQLSVDLENPIVLEGHLQCAAQEMPVKPEDDEVYFGAMMKE- 833
Query: 701 ITTLKNR------GYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQS- 753
K R GY + P + PS +SIR E E Y ++D +
Sbjct: 834 --ICKERLLPDEEGYYHAHPRM------------LPFPSRHVSIRNTEDETYVIVDTTNG 879
Query: 754 -NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTD 812
++LEEIE S+A F+V+EGA+++HQG T++ E+N +++IA +A + + TK RDYTD
Sbjct: 880 RQKILEEIEWSRAVFEVFEGALFIHQGKTFITLEVNHTTRIAKLVQAQVDWMTKQRDYTD 939
Query: 813 IHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYS 872
+ + A ++ + + + A VT+ +G++++ + + I+ D V+L P +
Sbjct: 940 V-----DAVEAVRVREIKGSVNRAYYGPVRVTSVVYGYFKVDKRNNIL-DVVDLDTPPFV 993
Query: 873 YESQAVWIQVPQS-VKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPH- 930
++ VW+ VP+S ++ + E+N +HAA HAL+ + P++V D+ EC P
Sbjct: 994 RDTNGVWVDVPRSCLEILTEKNLHIAGAIHAAEHALMGLTPLFVMSVAGDIRTECKVPEK 1053
Query: 931 ------DSRYFPERILLYDRHPGGTGVSKQVTD 957
R P R+ +YD GV +V D
Sbjct: 1054 EFLNKASKRKRPARLTIYDASGKSGGVCAKVFD 1086
>gi|345562553|gb|EGX45621.1| hypothetical protein AOL_s00169g227 [Arthrobotrys oligospora ATCC
24927]
Length = 1065
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 270/721 (37%), Positives = 401/721 (55%), Gaps = 78/721 (10%)
Query: 253 ISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKAL 312
I++LYSHQA ++ G+NVVV+T TSSGKS+ Y +P L L D AL +FPTKAL
Sbjct: 305 ITRLYSHQATALNDIFHGENVVVSTSTSSGKSIIYQIPFLHRLQDDPDCRALLIFPTKAL 364
Query: 313 AQDQ---LRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPY 369
AQDQ L +L K + + YDGDT + R +R+ AR++ TNPDMLH++ILP
Sbjct: 365 AQDQKASLAKMLEFMKDEVGDVLVDTYDGDTPKDQRRRIREEARVVFTNPDMLHLNILPN 424
Query: 370 HGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLC 429
Q+ L NL+ FVVIDE H Y G FG H +L+LRRL R+C
Sbjct: 425 EEQWRSFLRNLK-------------------FVVIDELHVYNGLFGSHVSLVLRRLRRIC 465
Query: 430 SHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSV 489
S V + F+ +AT NP +H +L +S+++L DGSP +K F+ WN
Sbjct: 466 SAVGNNSVIFIACSATVENPEKHMKDLLGISSVKLTSIDGSPTGEKTFLCWN-------C 518
Query: 490 LNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREIL 549
K TD+ R P+ E + LF E++ G+R IAFCR R++CEL +S +++L
Sbjct: 519 PYKDPTDLQAGR------VDPVQEAAKLFVELIVRGVRTIAFCRVRRVCELTVSAIKQVL 572
Query: 550 -EETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHL 608
+ P L + YR GY A+DRR IE + F G L GV AT ALELGIDVG +D L +
Sbjct: 573 IDRGLPQLSGRVMSYRGGYSAQDRRNIENEMFNGHLLGVVATTALELGIDVGTLDAVLMV 632
Query: 609 GFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNH 668
GFP SI++L QQ+GR+GRR++ SL+V + LDQ++M P+ + +P HID +N
Sbjct: 633 GFPYSISNLRQQSGRAGRRKQDSLSVLIGDRFALDQHYMSNPDLIKTAPNPSLHIDLENI 692
Query: 669 KVLEQHLVCAALEHPLSLIYDEKYFGS---GLSSGITTLKNRGYLSSDPSLDSSAKIFEY 725
+LE H+ CAA E P++ D KYFG+ L+ NRG+ Y
Sbjct: 693 LILEGHVQCAAFEMPINPEQDAKYFGTSLKALADERLVKDNRGF---------------Y 737
Query: 726 IGHEKM---PSHTISIRAIESERYEVIDMQSNE--VLEEIEESKAFFQVYEGAVYMHQGH 780
H++ PS +SIR E + + V+D+ N VLE +E S+A F +YEGA+++HQG
Sbjct: 738 HCHDRFRPYPSQHVSIRDTEDDHFAVVDVTQNRNVVLETVEPSRAPFTIYEGAIFLHQGL 797
Query: 781 TYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQAL- 839
YLV+E N+ KIA + + + T+ RD+TD+ + T+ ++ ++ +T +A
Sbjct: 798 KYLVREFNVDRKIAKVELVKVDWITQQRDFTDV------DPVETEATR-KIPGSTCKAYF 850
Query: 840 -ACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVE-QNFSFR 897
+T+ FG++++ R G FD V++ P S+ +W+ VPQ ++ +N++
Sbjct: 851 GDVKITSVVFGYFKVDR-KGRKFDAVDVETPPLEILSKGMWLDVPQLAFEILRVKNYNIA 909
Query: 898 SGLHAASHALLHVVPIYVRCNFSDLAPECPNPHD-------SRYFPERILLYD-RHPGGT 949
+ +HAA H++L ++P +V + D+ EC P +R P R+ YD + G T
Sbjct: 910 ASIHAAEHSILALLPTFVIGSAGDVRTECKAPQKEFAKRETTRKRPGRLTFYDAKGCGST 969
Query: 950 G 950
G
Sbjct: 970 G 970
>gi|449297281|gb|EMC93299.1| hypothetical protein BAUCODRAFT_150648 [Baudoinia compniacensis UAMH
10762]
Length = 1151
Score = 468 bits (1203), Expect = e-128, Method: Compositional matrix adjust.
Identities = 265/720 (36%), Positives = 397/720 (55%), Gaps = 68/720 (9%)
Query: 253 ISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKAL 312
I++LYSHQ E+I A G+NV+VAT TSSGKSL Y +PVL AL DL + A+Y+FPTKAL
Sbjct: 367 ITRLYSHQVEAINALHEGQNVIVATSTSSGKSLIYQIPVLTALESDLQTRAMYIFPTKAL 426
Query: 313 AQDQLRALLAMTKAFDASIDI--GVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYH 370
AQDQ R+L + D+ +DGDT DR +RD AR++ TNPDMLH++ILP
Sbjct: 427 AQDQRRSLKDLLACMPGLSDVMCETFDGDTPFPDRNLIRDEARIIFTNPDMLHLTILPQE 486
Query: 371 GQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCS 430
+ L NLR +VV+DE H Y G FG H ALI+RRL R+C+
Sbjct: 487 ESWRNFLQNLR-------------------YVVMDELHVYNGLFGAHVALIMRRLRRICA 527
Query: 431 HVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVL 490
V F+ +AT ANP+EH + + + L+ DGSP +K F+ WN
Sbjct: 528 AVGNRHVKFISCSATVANPQEHMRTIFGIEDVRLVDFDGSPSGRKEFLCWN--------- 578
Query: 491 NKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTR-EIL 549
T D + ++ +E + LF +++ G+R IAFCR RK CE++ + + E++
Sbjct: 579 ----TPFKDPGDPSSGRGDTFAETARLFCQLILRGVRIIAFCRVRKQCEILTTAVKNELV 634
Query: 550 EETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLG 609
++ + YR GY +DRRRIER+ F GKL G+ TNALELG+D+G +D L +G
Sbjct: 635 SLERGEVMARVMAYRGGYTPQDRRRIEREMFDGKLVGIIGTNALELGVDIGSLDAVLTVG 694
Query: 610 FPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHK 669
FP +IA+L QQ+GR+GRR + SL++ V P DQYFM+ P+++F P +D N
Sbjct: 695 FPYTIANLRQQSGRAGRRNKDSLSILVGDCFPTDQYFMQNPDEIFTRPNCELQVDLTNML 754
Query: 670 VLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNR---GYLSSDPSLDSSAKIFEYI 726
VLE H+ CAA E P+S D YF L T + G+ +D ++
Sbjct: 755 VLEGHVQCAAYEMPISPDEDVHYFTKQLPEICETRMRKDDLGFYHTDE---------RFL 805
Query: 727 GHEKMPSHTISIRAIESERYEVIDMQS--NEVLEEIEESKAFFQVYEGAVYMHQGHTYLV 784
H PS +++IR E + ++D + NEVLEE+E S+AFF +YEG +++HQG TYLV
Sbjct: 806 PH---PSRSVAIRDTEDSHFAIVDTTNGRNEVLEELEASRAFFTIYEGGIFLHQGRTYLV 862
Query: 785 KELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVT 844
K ++ + IA + +++ T+ RDYTDI + I + + + A V
Sbjct: 863 KHMDTDNMIAKVEYVKVEWTTQQRDYTDI-----DPVETEAIRRIPGSLSRAFFGRIRVL 917
Query: 845 TTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQ-SVKAVVEQNFSFRSGLHAA 903
FGF+++ + I+ D V++ P +S+ +W+ VP+ +++ + + + +G+HAA
Sbjct: 918 QNVFGFFKVDKKRRIL-DAVQVDNPPIIIQSKGMWLDVPKHAIEILQSRRLNLAAGIHAA 976
Query: 904 SHALLHVVPIYVRCNFSDLAPEC-------PNPHDSRYFPERILLYDRHPG--GTGVSKQ 954
HA+L ++P +V D+ EC R P R+ YD G G+G++ +
Sbjct: 977 EHAILSLMPNFVISMPGDVRTECKVAIKEFAKKETQRKRPARLTFYDDKGGQHGSGIAAK 1036
>gi|350634369|gb|EHA22731.1| hypothetical protein ASPNIDRAFT_173344 [Aspergillus niger ATCC 1015]
Length = 1123
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 290/783 (37%), Positives = 423/783 (54%), Gaps = 86/783 (10%)
Query: 205 EMVEHLRKGIGSQGQMVHVED--ISARKAVLVEIPDALLDNTKSALKST-GISKLYSHQA 261
E+VE +R+ Q+V + A+ E+ L N +AL +T I++ YSHQA
Sbjct: 314 EIVEEIRQMDWYTAQIVPEGHRVFDPQPAIYGELTFPLSQNLVNALYNTKNITQFYSHQA 373
Query: 262 ESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALL 321
E+I AG +V+V+T TSSGKSL Y +P+L L D SS LY+FPTKALAQDQ R++
Sbjct: 374 EAINHLQAGHHVIVSTSTSSGKSLIYQVPMLHELEKDPSSRGLYIFPTKALAQDQRRSMQ 433
Query: 322 AMTKAFDA--SIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSN 379
+ + D + +DGDT R +RD AR++ TNPDMLH++ILP + L N
Sbjct: 434 ELLQFMDGLQGTLVETFDGDTPMPSRNLIRDEARIIFTNPDMLHITILPQEAAWRTFLQN 493
Query: 380 LRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSF 439
L+ FVV+DE H Y G FG H A I+RRL R+C+ V F
Sbjct: 494 LK-------------------FVVVDELHVYNGLFGTHVAFIMRRLRRICAAVGNHTVQF 534
Query: 440 VFSTATSANPREHCMEL--ANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDM 497
+ +AT ANP +H + + +++ LI +DGSP +K F+ WN T
Sbjct: 535 ISCSATVANPSQHMRAIFGVDPNSIHLIDSDGSPSGRKEFLCWN-------------TPY 581
Query: 498 DDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTR-EILEETAPHL 556
D + ++ + ++E + LF++++ G R IAFCR RKLCE++L R E+ P +
Sbjct: 582 KDPNDPSSGRADSVTETARLFSQLILRGARVIAFCRIRKLCEVLLQAVRTELTSLERPEI 641
Query: 557 VDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIAS 616
+ + YR GY +DRR IE+D F G+L G+ ATNALELG+D+G +D + LGFP SI++
Sbjct: 642 ANMVMGYRGGYSPQDRRNIEKDMFEGRLLGIVATNALELGVDIGSLDAVITLGFPYSISN 701
Query: 617 LWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLV 676
L QQ+GR+GRR + SL++ V DQ++M+ P++LF P ID N +LE HL
Sbjct: 702 LRQQSGRAGRRNKDSLSILVGDRYATDQHYMRNPDELFTKPNTELQIDLSNDLILEAHLQ 761
Query: 677 CAALEHPLSLIYDEKYFGSGLSSGITT-LKNRGYLSSDPSLDSSAKIFEYIGHEKM---P 732
CAA E PLSL DE YFG L S + T L Y+ PSL Y H + P
Sbjct: 762 CAAYEKPLSLALDETYFGPQLPSLLETRLLQDKYI---PSL--------YHTHPRFLPSP 810
Query: 733 SHTISIRAIESERYEVIDMQS--NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLS 790
S +I+IR E + + VID + N VLEE+E S+AFF +YEG +++HQG TYLV ELN S
Sbjct: 811 SRSIAIRDTEDQHFAVIDTTNARNTVLEEVEASRAFFTIYEGGIFLHQGQTYLVHELNTS 870
Query: 791 SKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWF-- 848
A + + Y T+ RDYTDI N ++T S +T ++ TV+ +F
Sbjct: 871 MYFARVSRVHVDYTTQQRDYTDIDPIETENIHSTSTS-----QTNTKSNHTTVSKAYFGS 925
Query: 849 --------GFYRLWRGSGIIFDTVEL-YLPKYSYESQAVWIQVPQ-SVKAVVEQNFSFRS 898
GF+++ + G I D V + P ++ +WI +P +++ + +N + +
Sbjct: 926 ILIHAVVYGFFKIDK-RGRILDAVPVDNNPPIDIHTKGMWIDIPPLALEILQSRNLNIAA 984
Query: 899 GLHAASHALLHVVPIYVRCNFSDLAPECPNPHD-----------SRYFPERILLYDRHPG 947
+HAA HA+L ++P +V + D+ EC +R P R+ YD G
Sbjct: 985 AIHAAEHAILSLLPTFVVSSPGDVRTECKVAKKELGRKLQMAPPARQRPARLTFYDAKGG 1044
Query: 948 GTG 950
G
Sbjct: 1045 ACG 1047
>gi|451995740|gb|EMD88208.1| hypothetical protein COCHEDRAFT_1144290 [Cochliobolus heterostrophus
C5]
Length = 1363
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 266/735 (36%), Positives = 407/735 (55%), Gaps = 69/735 (9%)
Query: 239 ALLDNTKSALKST-GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSH 297
A+ N +AL +T I++LY+HQAE+I G NV+V+T TSSGKSL Y +PVL L
Sbjct: 333 AMSQNLVNALYNTKNITQLYAHQAEAINNLYDGHNVIVSTSTSSGKSLIYQIPVLHQLEQ 392
Query: 298 DLSSSALYMFPTKALAQDQ---LRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARL 354
+ + A+Y+FPTKALAQDQ ++ LL + F+ + + +DGDT DR ++RD AR+
Sbjct: 393 EPDTRAMYIFPTKALAQDQRKSMKELLRLMPGFE-DVLVETFDGDTPMGDRNYIRDEARI 451
Query: 355 LITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAF 414
+ TNPDMLH++ILP + L NLR FVV+DE H Y G F
Sbjct: 452 IFTNPDMLHITILPQEDSWRTFLQNLR-------------------FVVVDELHVYNGLF 492
Query: 415 GCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQ 474
G H A I+RRL R+C+ V F+ +AT ANP EH + + + L DGSP +
Sbjct: 493 GAHMAFIMRRLRRVCAAVGNRHVKFISCSATVANPEEHMKTIFGVEQVRLTDFDGSPSGR 552
Query: 475 KLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRS 534
K F+ WN T D + + ++E + LF +++ G+R IAFCR
Sbjct: 553 KEFLCWN-------------TPFKDPGDPTSGRGDCMAETAKLFCQLMLRGVRTIAFCRV 599
Query: 535 RKLCE-LVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNAL 593
RK CE L+++ E+ P ++ + YR GY +DRR IER+ F GKLCGV AT+AL
Sbjct: 600 RKHCEALMVAVKTELTNLERPEVIPRVMSYRGGYTPQDRREIEREMFDGKLCGVVATSAL 659
Query: 594 ELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKL 653
ELG+D+G +D + +GFP +IA+L QQ+GR+GRR + SL+V + P DQY+M P+++
Sbjct: 660 ELGVDIGSLDAVITVGFPYTIANLRQQSGRAGRRNKDSLSVLIGDSFPTDQYYMSNPDEI 719
Query: 654 FKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSD 713
F P +D +N V+E H+ CAA E P+++ D +YFGS L I + R
Sbjct: 720 FTKPNCALQVDLENMLVVEGHIQCAAYEMPINVETDVEYFGSLLPK-IARERMR------ 772
Query: 714 PSLDSSAKIFEYIGHE--KMPSHTISIRAIESERYEVIDMQS--NEVLEEIEESKAFFQV 769
+ F ++ PS T++IR E + + +ID + N VLEE+E S+AFF +
Sbjct: 773 ----RDKEGFYHVNERFLPQPSRTVAIRDTEEDHFAIIDTTNGKNTVLEELEASRAFFTL 828
Query: 770 YEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKD 829
Y+G +++HQG+TYLVKE + +A + + + T+ RDYTDI + I +
Sbjct: 829 YDGGIFLHQGNTYLVKEFSQERMLAKVEYVKVDWTTQQRDYTDI-----DPVETEAIRRI 883
Query: 830 QLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAV 889
+++ A + +GF+++ + I+ D V++ P S+ +W+ VP+S +
Sbjct: 884 PGSRSKAFYGPIKIKQVVYGFFKIDKRRRIL-DAVQVDNPPIILFSKGMWLDVPKSAMDI 942
Query: 890 VE-QNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNP-------HDSRYFPERILL 941
++ + + +G+HAA HA+L ++P +V D+ EC P +R P R+
Sbjct: 943 LKSRRLNIAAGIHAAEHAVLCLMPNFVISMPGDVRTECKVPEKEFLQKESTRKRPARLTF 1002
Query: 942 YDRHPG--GTGVSKQ 954
YD G G+G+S +
Sbjct: 1003 YDAKGGASGSGISTK 1017
>gi|330919270|ref|XP_003298544.1| hypothetical protein PTT_09296 [Pyrenophora teres f. teres 0-1]
gi|311328207|gb|EFQ93368.1| hypothetical protein PTT_09296 [Pyrenophora teres f. teres 0-1]
Length = 1059
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 269/733 (36%), Positives = 403/733 (54%), Gaps = 65/733 (8%)
Query: 239 ALLDNTKSALKST-GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSH 297
A+ N +AL +T I++LY+HQAE+I G NV+V+T TSSGKSL Y +PVL L
Sbjct: 362 AMSQNLVNALYNTRNITQLYAHQAEAINNLYDGHNVIVSTSTSSGKSLIYQIPVLHQLEQ 421
Query: 298 DLSSSALYMFPTKALAQDQ---LRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARL 354
+ ++ A+Y+FPTKALAQDQ ++ LL F+ + + +DGDT DR ++RD AR+
Sbjct: 422 EPNTRAMYIFPTKALAQDQRKSMKELLRFMPGFEEVL-VETFDGDTPMSDRNYIRDEARI 480
Query: 355 LITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAF 414
+ TNPDMLH++ILP + L NLR FVV+DE H Y G F
Sbjct: 481 IFTNPDMLHITILPQEEAWRSFLQNLR-------------------FVVVDELHVYNGLF 521
Query: 415 GCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQ 474
G H A I+RRL R+C+ V F+ +AT ANP EH + + ++L DGSP +
Sbjct: 522 GAHMAFIMRRLRRICAAVGNRHVKFISCSATVANPEEHMKTIFGVDEVKLTDFDGSPSGR 581
Query: 475 KLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRS 534
K FV WN T D + + ++E + LF +++ G+R IAFCR
Sbjct: 582 KEFVCWN-------------TPFKDPGDPTSGRGDCMAETAKLFCQLMLRGVRAIAFCRV 628
Query: 535 RKLCELVLSYTR-EILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNAL 593
RK CE +L+ + E+ ++ + YR GY +DRR IER+ F GKLCG+ AT+AL
Sbjct: 629 RKQCEALLAAVKTELTNLERTEVIPRVMSYRGGYTPQDRREIEREMFDGKLCGIVATSAL 688
Query: 594 ELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKL 653
ELG+D+G +D + +GFP +IA+L QQ+GR+GRR + SL+V V P DQ++M P+++
Sbjct: 689 ELGVDIGSLDAVVTVGFPYTIANLRQQSGRAGRRNKDSLSVLVGDCFPTDQHYMSNPDEI 748
Query: 654 FKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSD 713
F P +D +N VLE H+ CAA E P+++ D YFG L + R L D
Sbjct: 749 FTKPNCALQVDLENMLVLEGHVQCAAHELPINIEADTPYFGPLLPK---LARERMRLDRD 805
Query: 714 PSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNE--VLEEIEESKAFFQVYE 771
+ + PS T++IR E + + +ID+ N VLEE+E S+AFF +Y+
Sbjct: 806 GFYHVNTRFL------PQPSRTVAIRDTEEDHFAIIDITHNRNVVLEELEASRAFFTLYD 859
Query: 772 GAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQL 831
G +++HQG+TYLVKE + +A + + + T+ RDYTDI + I +
Sbjct: 860 GGIFLHQGNTYLVKEFHPDRMLAKVELVKVDWTTQQRDYTDI-----DPVETQAIRRIPG 914
Query: 832 TKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVE 891
+ + A +T +GF+++ + I+ D V++ P S+ +W+ VP S ++
Sbjct: 915 SHSKAFFGPIKITQVVYGFFKIDKRRRIL-DAVQVDNPPIVLHSKGMWLDVPTSALQILR 973
Query: 892 -QNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPH------DS-RYFPERILLYD 943
+ + +G+HAA HALL ++P +V D+ EC P DS R P R+ YD
Sbjct: 974 SKRLNIAAGIHAAEHALLSLMPNFVISLPGDVRTECKVPEKEFLAKDSLRKRPARLTFYD 1033
Query: 944 RHPG--GTGVSKQ 954
G G+G+S +
Sbjct: 1034 AKGGANGSGISTK 1046
>gi|189210659|ref|XP_001941661.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187977754|gb|EDU44380.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 1200
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 269/733 (36%), Positives = 403/733 (54%), Gaps = 65/733 (8%)
Query: 239 ALLDNTKSALKST-GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSH 297
A+ N +AL +T I++LY+HQAE+I G NV+V+T TSSGKSL Y +PVL L
Sbjct: 361 AMSQNLVNALYNTRNITQLYAHQAEAINNLYDGHNVIVSTSTSSGKSLIYQIPVLHQLEQ 420
Query: 298 DLSSSALYMFPTKALAQDQ---LRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARL 354
+ ++ A+Y+FPTKALAQDQ ++ LL F+ + + +DGDT DR ++RD AR+
Sbjct: 421 EPNTRAMYIFPTKALAQDQRKSMKELLRFMPGFEEVL-VETFDGDTPMSDRNYIRDEARI 479
Query: 355 LITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAF 414
+ TNPDMLH++ILP + L NLR FVV+DE H Y G F
Sbjct: 480 IFTNPDMLHITILPQEDAWRTFLQNLR-------------------FVVVDELHVYNGLF 520
Query: 415 GCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQ 474
G H A I+RRL R+C+ V F+ +AT ANP EH + + ++L DGSP +
Sbjct: 521 GAHMAFIMRRLRRICAAVGNRHVKFISCSATVANPEEHMKTIFGVDEVKLTDFDGSPSGR 580
Query: 475 KLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRS 534
K FV WN T D + + ++E + LF +++ G+R IAFCR
Sbjct: 581 KEFVCWN-------------TPFKDPGDPTSGRGDCMAETAKLFCQLMLRGVRAIAFCRV 627
Query: 535 RKLCELVLSYTR-EILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNAL 593
RK CE +L+ + E+ ++ + YR GY +DRR IER+ F GKLCG+ AT+AL
Sbjct: 628 RKQCEALLAAVKTELTNLERTEVISRVMSYRGGYTPQDRREIEREMFEGKLCGIVATSAL 687
Query: 594 ELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKL 653
ELG+D+G +D + +GFP +IA+L QQ+GR+GRR + SL+V V P DQ++M P+++
Sbjct: 688 ELGVDIGSLDAVVTVGFPYTIANLRQQSGRAGRRNKDSLSVLVGDCFPTDQHYMSNPDEI 747
Query: 654 FKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSD 713
F P +D +N VLE H+ CAA E P++L D YFG L + R L D
Sbjct: 748 FTKPNCALQVDLENMLVLEGHVQCAAHELPINLETDTSYFGPLLPK---LARERMRLDRD 804
Query: 714 PSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNE--VLEEIEESKAFFQVYE 771
+ + PS T++IR E + + +ID +N VLEE+E S+AFF +Y+
Sbjct: 805 GFYHVNTRFL------PQPSRTVAIRDTEEDHFAIIDTTNNRNVVLEELEASRAFFTLYD 858
Query: 772 GAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQL 831
G +++HQG+TYLVKE + +A + + + T+ RDYTDI + I +
Sbjct: 859 GGIFLHQGNTYLVKEFHPDRMLAKVELVKVDWTTQQRDYTDI-----DPVETQAIRRIPG 913
Query: 832 TKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVE 891
+ + A +T +GF+++ + I+ D V++ P S+ +W+ VP S ++
Sbjct: 914 SHSKAFFGPIKITQVVYGFFKIDKRRRIL-DAVQVDNPPIVLHSKGMWLDVPTSALQILR 972
Query: 892 -QNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPH------DS-RYFPERILLYD 943
+ + +G+HAA HA+L ++P +V D+ EC P DS R P R+ YD
Sbjct: 973 SRRLNIAAGIHAAEHAVLSLMPNFVISLPGDVRTECKVPEKEFLAKDSLRKRPARLTFYD 1032
Query: 944 RHPG--GTGVSKQ 954
G G+G+S +
Sbjct: 1033 AKGGANGSGISTK 1045
>gi|451851467|gb|EMD64765.1| hypothetical protein COCSADRAFT_25756 [Cochliobolus sativus ND90Pr]
Length = 1408
Score = 464 bits (1193), Expect = e-127, Method: Compositional matrix adjust.
Identities = 265/733 (36%), Positives = 404/733 (55%), Gaps = 65/733 (8%)
Query: 239 ALLDNTKSALKST-GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSH 297
A+ N +AL +T I++LY+HQAE+I G NV+V+T TSSGKSL Y +PVL L
Sbjct: 333 AMSQNLVNALYNTKNITQLYAHQAEAINNLYDGHNVIVSTSTSSGKSLIYQIPVLHQLEQ 392
Query: 298 DLSSSALYMFPTKALAQDQ---LRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARL 354
+ + A+Y+FPTKALAQDQ ++ LL F+ + + +DGDT DR ++RD AR+
Sbjct: 393 EPDTRAMYIFPTKALAQDQRKSMKELLRFMPGFE-DVLVETFDGDTPMGDRNYIRDEARI 451
Query: 355 LITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAF 414
+ TNPDMLH++ILP + L NLR FVV+DE H Y G F
Sbjct: 452 IFTNPDMLHITILPQEDSWRTFLQNLR-------------------FVVVDELHVYNGLF 492
Query: 415 GCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQ 474
G H A I+RRL R+C+ V F+ +AT ANP EH + + + L DGSP +
Sbjct: 493 GAHMAFIMRRLRRVCAAVGNRHVKFISCSATVANPEEHMKTIFGVEQVRLTDFDGSPSGR 552
Query: 475 KLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRS 534
K F+ WN T D + + ++E + LF +++ G+R IAFCR
Sbjct: 553 KEFLCWN-------------TPFKDPGDPTSGRGDCMAETAKLFCQLMLRGVRTIAFCRI 599
Query: 535 RKLCE-LVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNAL 593
RK CE L+++ E+ P ++ + YR GY +DRR IER+ F GKLCGV AT+AL
Sbjct: 600 RKQCEALMVAVKTELTNLERPEVIPRVMSYRGGYTPQDRREIEREMFDGKLCGVVATSAL 659
Query: 594 ELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKL 653
ELG+D+G +D + +GFP +IA+L QQ+GR+GRR + SL+V V P DQY+M P+++
Sbjct: 660 ELGVDIGSLDAVITVGFPYTIANLRQQSGRAGRRNKDSLSVLVGDSFPTDQYYMSNPDEI 719
Query: 654 FKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSD 713
F P +D +N V+E H+ CAA E P+++ D +YFGS L + R L +
Sbjct: 720 FTKPNCALQVDLENMLVVEGHIQCAAYEMPINVETDMEYFGSLLPK---IARERMRLDKE 776
Query: 714 PSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQS--NEVLEEIEESKAFFQVYE 771
+ + PS T++IR E + + +ID + N VLEE+E S+AFF +Y+
Sbjct: 777 GFYHVNERFL------PQPSRTVAIRDTEEDHFAIIDTTNGKNTVLEELEASRAFFTLYD 830
Query: 772 GAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQL 831
G +++HQG+TYLVKE + +A + + + T+ RDY DI + I +
Sbjct: 831 GGIFLHQGNTYLVKEFSPERMLAKVEYVKVDWTTQQRDYMDI-----DPVETEAIRRIPG 885
Query: 832 TKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVE 891
+++ A + +GF+++ + I+ D V++ P S+ +W+ VP+S +++
Sbjct: 886 SRSKAFYGPIKIKQVVYGFFKIDKRRRIL-DAVQVDNPPIILFSKGMWLDVPKSAMDILK 944
Query: 892 -QNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNP-------HDSRYFPERILLYD 943
+ + +G+HAA HA+L ++P +V D+ EC P +R P R+ YD
Sbjct: 945 SRRLNIAAGIHAAEHAVLCLMPNFVISMPGDVRTECKVPEKEFLQKESTRKRPARLTFYD 1004
Query: 944 RHPG--GTGVSKQ 954
G G+G+S +
Sbjct: 1005 AKGGASGSGISTK 1017
>gi|134056316|emb|CAK37548.1| unnamed protein product [Aspergillus niger]
Length = 1154
Score = 463 bits (1191), Expect = e-127, Method: Compositional matrix adjust.
Identities = 289/783 (36%), Positives = 423/783 (54%), Gaps = 86/783 (10%)
Query: 205 EMVEHLRKGIGSQGQMVHVED--ISARKAVLVEIPDALLDNTKSALKST-GISKLYSHQA 261
E+VE +R+ Q+V + A+ E+ L N +AL +T I++ YSHQA
Sbjct: 312 EIVEEIRQMDWYTAQIVPEGHRVFDPQPAMYGELTFPLSQNLVNALYNTKNITQFYSHQA 371
Query: 262 ESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALL 321
E+I AG +V+V+T TSSGKSL Y +P+L L D SS LY+FPTKALAQDQ R++
Sbjct: 372 EAINHLQAGHHVIVSTSTSSGKSLIYQVPMLHELEKDPSSRGLYIFPTKALAQDQRRSMQ 431
Query: 322 AMTKAFDA--SIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSN 379
+ + D + +DGDT R +RD AR++ TNPDMLH++ILP + L N
Sbjct: 432 ELLQFMDGLQGTLVETFDGDTPMPSRNLIRDEARIIFTNPDMLHITILPQEAAWRTFLQN 491
Query: 380 LRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSF 439
L+ FVV+DE H Y G FG H A I+RRL R+C+ V F
Sbjct: 492 LK-------------------FVVVDELHVYNGLFGTHVAFIMRRLRRICAAVGNHTVQF 532
Query: 440 VFSTATSANPREHCMEL--ANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDM 497
+ +AT ANP +H + + +++ LI +DGSP +K F+ WN T
Sbjct: 533 ISCSATVANPSQHMHAIFGVDPNSIHLIDSDGSPSGRKEFLCWN-------------TPY 579
Query: 498 DDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTR-EILEETAPHL 556
D + ++ + ++E + LF++++ G R IAFCR RKLCE++L R E+ P +
Sbjct: 580 KDPNDPSSGRADSVTETARLFSQLILRGARVIAFCRIRKLCEVLLQAVRTELTSLERPEI 639
Query: 557 VDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIAS 616
+ + YR GY +DRR IE+D F G+L G+ ATNALELG+D+G +D + LGFP SI++
Sbjct: 640 ANMVMGYRGGYSPQDRRNIEKDMFEGRLLGIVATNALELGVDIGSLDAVITLGFPYSISN 699
Query: 617 LWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLV 676
L QQ+GR+GRR + SL++ V DQ++M+ P++LF P ID N +LE HL
Sbjct: 700 LRQQSGRAGRRNKDSLSILVGDRYATDQHYMRNPDELFTKPNTELQIDLSNDLILEAHLQ 759
Query: 677 CAALEHPLSLIYDEKYFGSGLSSGITT-LKNRGYLSSDPSLDSSAKIFEYIGHEKM---P 732
CAA E PLSL DE YFG L S + T L Y+ PSL Y H + P
Sbjct: 760 CAAYEKPLSLALDETYFGPQLPSLLETRLLQDKYI---PSL--------YHTHPRFLPSP 808
Query: 733 SHTISIRAIESERYEVIDMQS--NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLS 790
S +I+IR E + + VID + N VLEE+E S+AFF +YEG +++HQG TYLV ELN +
Sbjct: 809 SRSIAIRDTEDQHFAVIDTTNARNAVLEEVEASRAFFTIYEGGIFLHQGQTYLVHELNTT 868
Query: 791 SKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWF-- 848
A + + Y T+ RDYTDI N ++T S +T ++ TV+ +F
Sbjct: 869 MYFARVSRVHVDYTTQQRDYTDIDPIETENIHSTSTS-----QTNTKSNHTTVSKAYFGS 923
Query: 849 --------GFYRLWRGSGIIFDTVEL-YLPKYSYESQAVWIQVPQ-SVKAVVEQNFSFRS 898
GF+++ + G I D V + P ++ +WI +P +++ + +N + +
Sbjct: 924 ILIHAVVYGFFKIDK-RGRILDAVPVDNNPPIDIHTKGMWIDIPPLALEILQSRNLNIAA 982
Query: 899 GLHAASHALLHVVPIYVRCNFSDLAPECPNPHD-----------SRYFPERILLYDRHPG 947
+HAA HA+L ++P +V + D+ EC +R P R+ YD G
Sbjct: 983 AIHAAEHAILSLLPTFVVSSPGDVRTECKVAKKELGRKLQMAPPARQRPARLTFYDAKGG 1042
Query: 948 GTG 950
G
Sbjct: 1043 ACG 1045
>gi|443894793|dbj|GAC72140.1| predicted ATP-dependent RNA helicase [Pseudozyma antarctica T-34]
Length = 1485
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 279/743 (37%), Positives = 423/743 (56%), Gaps = 73/743 (9%)
Query: 229 RKAVLVEIPDALLDNTKSALKST-GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCY 287
R A + E+ L +AL +T GI +LY+HQAE++ A KNV+V+T TSSGKSL Y
Sbjct: 632 RPAKMGELNYLLSQAVVNALYATHGIEQLYAHQAEALNALHERKNVIVSTSTSSGKSLIY 691
Query: 288 NLPVLEALSHDLSSSALYMFPTKALAQDQLRAL---LAMTKAFDASIDIGVYDGDTTQKD 344
LPVL AL HD ++A+++FPTKALAQDQ R+L +A + + +I + YDGDT +
Sbjct: 692 QLPVLGALEHDGDATAMFIFPTKALAQDQRRSLQDLIANCEGVEGAI-VATYDGDTDKHL 750
Query: 345 RMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVI 404
R +R+ A ++ TNPDMLH SILP + R L NLR +VV+
Sbjct: 751 RKDIRERASVIFTNPDMLHQSILPSEDVWRRFLRNLR-------------------YVVV 791
Query: 405 DEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLEL 464
DE H Y G FG H + I+RRL R+CS + + FV +AT ANPREH L + + +
Sbjct: 792 DELHIYNGLFGAHVSFIMRRLRRICSALGNREVQFVSCSATVANPREHMQTLFGVHDVHV 851
Query: 465 IQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQH 524
+ DGSP +K +++WNP +D++ A + SS +EVS +F ++Q
Sbjct: 852 VTEDGSPAGRKEWLVWNPPL------------IDESDPAQGRVSS-YAEVSKVFRHLIQR 898
Query: 525 GLRCIAFCRSRKLCELVLSYTR-EILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGK 583
G+R I F + R+ CE+V+ R ++L E P + + + YR+GY +DRR+IE+D F G
Sbjct: 899 GVRTIVFTKVRRTCEIVMRQVRNDLLLEDRPDVANKVMSYRSGYSPQDRRKIEQDMFKGA 958
Query: 584 LCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLD 643
L G+ AT+ALELGID+G +D + LGFP SI+SL QQAGR+GRR++ SLAV + P+D
Sbjct: 959 LLGIVATSALELGIDIGSLDAVIMLGFPYSISSLRQQAGRAGRRQKDSLAVLIGDPWPMD 1018
Query: 644 QYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITT 703
Q++M +P+++F P +D N +LE HL CAA E P+++ DE+YFG L++ T
Sbjct: 1019 QHYMHFPDEIFLQPDAALSVDLGNDFILESHLQCAAEEMPITVEDDEQYFGPHLATLCQT 1078
Query: 704 LKNRGYLSSDPSLDSSAKIFEYIGHE--KMPSHTISIRAIESERYEVIDMQSN-----EV 756
L++ F Y E P+ ++IR E Y ID +V
Sbjct: 1079 -----------RLEADGSGFFYCREELRPNPARDVAIRGARQESYCYIDDTPGRAGGAQV 1127
Query: 757 LEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVS 816
+EE+E +A F+ +EGAV+MHQG +Y+ ++++ +IA +AD+ Y T+ RD+TD
Sbjct: 1128 MEEVEMERAIFEAFEGAVFMHQGLSYICRDIDHDGRIARMVQADVNYHTRPRDHTD---- 1183
Query: 817 GGNNAYAT-KISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYES 875
+A T +I + + + A T+ + +G++++ R + I+ D VE+ P + +
Sbjct: 1184 --TDAMETYRIRRLRESPYLAYYGKVTIASYVWGYFKVDRRANIL-DAVEVDCPPFVRHT 1240
Query: 876 QAVWIQVPQS-VKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPH---- 930
+ +WI VP V+A+ E+ + + +HAA HALL + P++V D+ EC
Sbjct: 1241 RGLWIDVPTWLVEAMTEKRINAAAAIHAAEHALLSLTPMFVVSVAGDVRTECKIAEKEYA 1300
Query: 931 ---DSRYFPERILLYDRHPGGTG 950
SR P R++ YD PG G
Sbjct: 1301 ARASSRKRPARLIFYD-MPGQNG 1322
>gi|440637598|gb|ELR07517.1| hypothetical protein GMDG_02608 [Geomyces destructans 20631-21]
Length = 1121
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 284/804 (35%), Positives = 437/804 (54%), Gaps = 85/804 (10%)
Query: 182 QSSTSSSHSFQRRCSDKSQLLPLE------MVEHLRKGIGSQGQMV----HVEDISARKA 231
+ S S++ + + + S + +P E +++ ++ + GQ+V V D ++A
Sbjct: 282 EPSNSTADALESKISTLPKSIPKERESISQIIKEVKDCVWYTGQIVPDGHRVFD--RQEA 339
Query: 232 VLVEIPDALLDNTKSALKST-GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLP 290
+ ++ L N +AL +T GI++ YSHQAE+I + G +V+VAT TSSGKSL Y LP
Sbjct: 340 IYGDLNFVLSQNLVNALYNTKGITQFYSHQAEAINSLNDGHHVIVATSTSSGKSLIYQLP 399
Query: 291 VLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASID---IGVYDGDTTQKDRMW 347
VL L D S+ A+Y+FPTKALAQDQ R+L M K F ++ + +DGDT DR
Sbjct: 400 VLHELERDSSTRAMYIFPTKALAQDQRRSLKEMMK-FMTGLENTLVETFDGDTAMADRNI 458
Query: 348 LRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEA 407
+R+ R++ TNPDMLH++ILP ++ L NL+ FVV+DE
Sbjct: 459 IREEGRIIFTNPDMLHITILPQEDKWRTFLKNLK-------------------FVVVDEI 499
Query: 408 HAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQN 467
H Y G FG H A ++RRL R+C+ + F+ +AT ANP EH + + + LI
Sbjct: 500 HVYSGLFGSHVAFVMRRLRRICAALGNRHIRFISCSATVANPTEHFKTIFGIEDVRLIDF 559
Query: 468 DGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLR 527
DGSP +K F+ WN T D + ++ ++E + LF +++ G+R
Sbjct: 560 DGSPSGRKEFLCWN-------------TPFKDPADPSSGRGDAVAESARLFCQLILRGVR 606
Query: 528 CIAFCRSRKLCE-LVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCG 586
IAFC+ R CE LV + E+ E + + YR GY +DRRRIE + F GKL G
Sbjct: 607 VIAFCKVRHKCESLVAAVKFELTELGRSDCMARVMGYRGGYTPQDRRRIETEMFEGKLVG 666
Query: 587 VAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYF 646
V AT+ALELG+D+G +D + +GFP +IA+L QQ+GR+GRR + SL+V V P DQY+
Sbjct: 667 VIATSALELGVDIGSLDAVITVGFPYTIANLRQQSGRAGRRNKDSLSVLVGDCFPTDQYY 726
Query: 647 MKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKN 706
M+ P+++F P +D QN V+E H+ CAA E P+ D YFG L +
Sbjct: 727 MQNPDEIFTKPNCELQVDLQNMLVVEGHVQCAAYELPIRPKEDALYFGKSLPA------- 779
Query: 707 RGYLSSDPSLDSSAKIFEYIG--HEKMPSHTISIRAIESERYEVIDMQ--SNEVLEEIEE 762
++ L+ F + + MPS ++IR E + + +ID+ N VLEE+E
Sbjct: 780 ----IAEERLEKDGLGFYHCNERYRPMPSKFVAIRDTEEDHFAIIDITHGKNIVLEELEA 835
Query: 763 SKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAY 822
S+AFF +Y+G ++MHQG+TYLVKE N KI + + + T+ RD+TDI +
Sbjct: 836 SRAFFTLYDGGIFMHQGNTYLVKEFNPDRKIVRVELVKVDWTTQQRDFTDI------DPI 889
Query: 823 ATKISKDQLTKTTAQALACTVT--TTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWI 880
T+ + ++T + ++A T+ T FGF+++ R G D VE+ P S+ +W+
Sbjct: 890 ETEAMR-RITGSPSRAFYGTIKIQQTVFGFFKVDR-RGRKMDAVEVDNPPIIRFSKGMWL 947
Query: 881 QVPQ-SVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPEC-------PNPHDS 932
VP+ ++ +VE+ + +HAA HA+L ++P +V D+ EC +
Sbjct: 948 DVPKHALDILVEKRLNVAGAIHAAEHAILSLMPNFVVSMPGDVRTECKVAVKEFARKETA 1007
Query: 933 RYFPERILLYDRH--PGGTGVSKQ 954
R P R+ YD GG+G+S +
Sbjct: 1008 RKRPARLTFYDAKGGAGGSGISTK 1031
>gi|452979532|gb|EME79294.1| hypothetical protein MYCFIDRAFT_177918 [Pseudocercospora fijiensis
CIRAD86]
Length = 1164
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 281/772 (36%), Positives = 418/772 (54%), Gaps = 73/772 (9%)
Query: 205 EMVEHLRKGIGSQGQMV----HVEDISARKAVLVEIPDALLDNTKSALKST-GISKLYSH 259
E+VE L+ GQ+V V D ++ V E+ L + +AL +T I LYSH
Sbjct: 312 EIVEELKGLEWYTGQIVPDGHRVFD--PQQPVYGELNFELSQDLVNALYNTRSIQALYSH 369
Query: 260 QAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRA 319
QAE+I A GKNV+VAT TSSGKSL Y LPVL AL D S A+Y+FPTKALAQDQ R+
Sbjct: 370 QAEAINALNEGKNVIVATSTSSGKSLIYQLPVLNALETDPSIRAMYIFPTKALAQDQRRS 429
Query: 320 LLAMTKAFDASIDI--GVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRIL 377
L AM D+ +DGDT DR ++RD AR++ TNPDMLH++ILP + L
Sbjct: 430 LKAMLAYLPGLEDLVCETFDGDTAFADRNYIRDEARIIFTNPDMLHLTILPQEESWRTFL 489
Query: 378 SNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDP 437
NLR +VV+DE H Y G FG H I+RRL R+C+ V +
Sbjct: 490 KNLR-------------------YVVMDELHVYNGLFGAHVGFIMRRLRRICAAVGNNKV 530
Query: 438 SFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDM 497
F+ +AT ANP EH + + ++LI DGSPC +K F+ WN T
Sbjct: 531 KFISCSATVANPEEHMRTIFGIEDVKLIDFDGSPCGRKEFLCWN-------------TPY 577
Query: 498 DDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTR-EILEETAPHL 556
D + + E + LF +++ G+R IAFC RK CE++L + E+ +
Sbjct: 578 KDPADPTSGRGDSFMECARLFCQLILRGVRVIAFCVIRKHCEILLGAVKNELASLNRSEV 637
Query: 557 VDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIAS 616
+ + YR GY A+DRR+IE + F GKL G+ T+ALELG+D+G +D + GFP +IA+
Sbjct: 638 MARVMAYRGGYTAQDRRKIEAEMFEGKLVGIIGTSALELGVDIGSLDAVISHGFPYTIAN 697
Query: 617 LWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLV 676
L QQ+GR+GRR + S + V P DQ+FM P+++F P +D N V E H+
Sbjct: 698 LRQQSGRAGRRNKDSASFLVGNSFPTDQFFMANPDEIFTRPNCELQVDLTNMLVREGHIQ 757
Query: 677 CAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTI 736
CA+ E P+ DEKYFG GL + + L + D ++ H P+ T+
Sbjct: 758 CASFEMPIRADEDEKYFGKGLDEICSERLRKDELGFFHTAD------RFLPH---PARTV 808
Query: 737 SIRAIESERYEVIDMQS--NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIA 794
+IR E + +ID + N VLEE+E+S+AFF +YEG +++HQG+ YLVK ++ IA
Sbjct: 809 AIRDTEDNHFAIIDTTNGRNTVLEELEQSRAFFTIYEGGIFLHQGNKYLVKMMSTEQMIA 868
Query: 795 LCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVT--TTWFGFYR 852
+ + + T+ RD+TDI + T+ + ++ + ++A T+ FGF++
Sbjct: 869 KVEFVKVDWITQQRDFTDI------DPIETEAIR-RIPGSLSRAFFGTIKIHQNVFGFFK 921
Query: 853 LWRGSGIIFDTVELYLPKYSYESQAVWIQVPQ-SVKAVVEQNFSFRSGLHAASHALLHVV 911
L + + I+ D V++ P S+ +W+ VP+ +V+ + + + +G+HAA HA+L ++
Sbjct: 922 LDKKNRIL-DAVQVDNPPIIIFSKGMWLDVPKNAVEILNSRRLNLAAGIHAAEHAILSLM 980
Query: 912 PIYVRCNFSDLAPEC-------PNPHDSRYFPERILLYDRHPG--GTGVSKQ 954
P +V D+ EC SR P R+ YD G G+G++ +
Sbjct: 981 PNFVISMPGDVKTECKVAIKEFAKKETSRKRPARLTFYDDKGGQHGSGIAAK 1032
>gi|336270670|ref|XP_003350094.1| hypothetical protein SMAC_00984 [Sordaria macrospora k-hell]
gi|380095477|emb|CCC06950.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1178
Score = 461 bits (1185), Expect = e-126, Method: Compositional matrix adjust.
Identities = 262/717 (36%), Positives = 399/717 (55%), Gaps = 66/717 (9%)
Query: 250 STGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPT 309
+ GI++ Y+HQA++I A G +VVV+T TSSGKSL Y LPV+ AL D ++ A+Y+FPT
Sbjct: 385 TKGITQFYAHQADAINALHDGHHVVVSTSTSSGKSLIYQLPVIHALEQDRNTRAMYIFPT 444
Query: 310 KALAQDQLRALLAMTKAFDA--SIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSIL 367
KALAQDQ R+L + K + + +DGDT DR +RD+AR++ TNPDMLH++IL
Sbjct: 445 KALAQDQKRSLKEVMKFMPGLEELLVETFDGDTPMHDRNVIRDDARIIFTNPDMLHITIL 504
Query: 368 PYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCR 427
P ++ L NL+ FVV+DE H Y G G H A I+RRL R
Sbjct: 505 PQEERWRTFLQNLK-------------------FVVVDELHYYNGLMGSHVAFIMRRLRR 545
Query: 428 LCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLR 487
+C+ V + F+ +AT ANP+EH + + ++LI DGSP +K F+ WN
Sbjct: 546 ICAAVGNTHVQFISCSATVANPKEHFTTIFGVEDVKLIDFDGSPSGRKEFLCWN------ 599
Query: 488 SVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTRE 547
T D + ++ + E S LF E++ G+R IAFCR R+ CE +++ ++
Sbjct: 600 -------TPYKDPGDPSSGRGNAKFECSRLFCELILRGVRVIAFCRVREHCEKLVNAIKQ 652
Query: 548 ILEETA-PHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTL 606
LE+ ++ + YR GY A+DRR+IE + F GKL G+ AT ALELG+D+G +D +
Sbjct: 653 ELEQRGRSECINRVMGYRGGYTAQDRRQIETEMFEGKLMGIVATTALELGVDIGTLDCVM 712
Query: 607 HLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQ 666
GFP +IA+L QQ+GR+GRR R SL++ V DQY+M+ P++LF P +D +
Sbjct: 713 TWGFPYTIANLRQQSGRAGRRNRDSLSILVGDSFATDQYYMQNPDELFTKPNCELQVDLE 772
Query: 667 NHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYI 726
N V E H+ CAA E P+ D KYFG L+ T+ + L D Y
Sbjct: 773 NMLVKEGHIQCAAYEMPILPAKDSKYFGEDLA----TVCEKRLLKGDRDF--------YH 820
Query: 727 GHEKM---PSHTISIRAIESERYEVIDMQSNE--VLEEIEESKAFFQVYEGAVYMHQGHT 781
H++ PS +SIR E + + +ID +N VLEE+E S+A F +Y+GA+++HQG+T
Sbjct: 821 CHDRFRPRPSQFVSIRDTEEDHFAIIDTTNNRNIVLEELEASRATFTIYDGAIFLHQGNT 880
Query: 782 YLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALAC 841
YLV++ N K+A +K + + T+ RDYTDI + I + +K+ A A
Sbjct: 881 YLVRDFNPDKKMARVEKVKVDWTTEQRDYTDI-----DPVETEAIRRISGSKSLAYHGAI 935
Query: 842 TVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQ-SVKAVVEQNFSFRSGL 900
+T FG++++ + + I+ D +++ P S+ W+ VP+ +++ +V + +
Sbjct: 936 KITQVVFGYFKVDKKNRIL-DAIQVDNPPVIRYSKGTWLDVPRLALEILVSRRLHVGGAI 994
Query: 901 HAASHALLHVVPIYVRCNFSDLAPECPN-------PHDSRYFPERILLYDRHPGGTG 950
HAA HA++ ++P +V D+ EC N R P R+ YD G +G
Sbjct: 995 HAAQHAIMSLMPNFVMSIPGDVRTECKNHLKEFARRETQRKRPARLTFYDAKGGASG 1051
>gi|452841841|gb|EME43777.1| hypothetical protein DOTSEDRAFT_79760 [Dothistroma septosporum NZE10]
Length = 1465
Score = 460 bits (1183), Expect = e-126, Method: Compositional matrix adjust.
Identities = 267/730 (36%), Positives = 399/730 (54%), Gaps = 66/730 (9%)
Query: 242 DNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSS 301
D + + GI+ LYSHQAE+I A G++V+V+T TSSGKSL Y LPVL L +
Sbjct: 651 DLVDAMYNTKGITSLYSHQAEAINALQEGQDVIVSTSTSSGKSLIYQLPVLHTLETEPQI 710
Query: 302 SALYMFPTKALAQDQLRALLAMTKAFDASIDI--GVYDGDTTQKDRMWLRDNARLLITNP 359
A+Y+FPTKALAQDQ R+L +M D+ +DGDT+ DR ++RD AR++ TNP
Sbjct: 711 RAMYIFPTKALAQDQRRSLKSMLSYMTDLSDVVCETFDGDTSFPDRNYIRDEARIIFTNP 770
Query: 360 DMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTA 419
DMLH++ILP + L NLR +VV+DE H Y G FG H A
Sbjct: 771 DMLHLTILPQEEAWRTFLKNLR-------------------YVVMDELHVYNGLFGAHVA 811
Query: 420 LILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVL 479
LI+RRL R+C+ V + F+ +AT ANP EH + + ++L+ DGSPC +K F+
Sbjct: 812 LIMRRLRRICAAVGNRNVKFISCSATVANPEEHMRTIFGIEDVKLVDFDGSPCGRKEFLC 871
Query: 480 WNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCE 539
WN T D + + E + LF ++V G+R I FCR RK CE
Sbjct: 872 WN-------------TPYKDPADPTSGRGDSFIETARLFCQLVLRGVRVICFCRIRKFCE 918
Query: 540 LVLSYTREILEETA-PHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGID 598
++ + + L +++ + YR GY +DRRRIE++ F GKL G+ T+ALELG+D
Sbjct: 919 ILTTAIKNELNALGRAEVMNRVMAYRGGYTPQDRRRIEKEMFEGKLVGIIGTSALELGVD 978
Query: 599 VGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPI 658
+G +D + GFP +IA+L QQ+GR+GRR + SL+V V P DQYFM P ++F P
Sbjct: 979 IGSLDCVISHGFPYTIANLRQQSGRAGRRNKDSLSVLVGNSFPTDQYFMANPNEIFTRPN 1038
Query: 659 ECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDS 718
+D N VLE H+ CAA E P+S D+K+F L + + L D
Sbjct: 1039 CELSVDLTNVLVLEGHIQCAAYEMPISADEDDKWFSKQLPEICSERLRKDDLGFYHPAD- 1097
Query: 719 SAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQS--NEVLEEIEESKAFFQVYEGAVYM 776
+ Y PS T++IR E + + ++DM + N VLEE+E S+AFF +YEG +++
Sbjct: 1098 --RFLPY------PSRTVAIRDTEDDHFAIVDMTNGRNVVLEELETSRAFFTIYEGGIHI 1149
Query: 777 HQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTA 836
HQG+ YLVK ++ IA + + + T+ RDYTDI + T+ + ++ + +
Sbjct: 1150 HQGNKYLVKHVDTERMIAKVEFVKVDWITQQRDYTDI------DPVETEAIR-RIPDSMS 1202
Query: 837 QALACTVT--TTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVP-QSVKAVVEQN 893
+A T+ FGF++L + + I+ D V++ P S+ +W+ VP Q+V+ + +
Sbjct: 1203 RAFFGTIKIHQNVFGFFKLDKKNRIL-DAVQVDNPPIIIFSKGMWLDVPKQAVEILNSRR 1261
Query: 894 FSFRSGLHAASHALLHVVPIYVRCNFSDLAPEC-------PNPHDSRYFPERILLYDRHP 946
+ +G+HAA HALL ++P +V D+ EC R P R+ YD
Sbjct: 1262 LNVAAGIHAAEHALLSLMPNFVISMPGDVKTECKVAIKEFAKKESKRKRPARLTFYDDKG 1321
Query: 947 G--GTGVSKQ 954
G G+G++ +
Sbjct: 1322 GQHGSGIAAK 1331
Score = 206 bits (523), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 113/286 (39%), Positives = 156/286 (54%), Gaps = 34/286 (11%)
Query: 242 DNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSS 301
D + + GI+ LYSHQAE+I A G++V+V+T TSSGKSL Y LPVL L +
Sbjct: 354 DLVDAMYNTKGITSLYSHQAEAINALQEGQDVIVSTSTSSGKSLIYQLPVLHTLETEPQI 413
Query: 302 SALYMFPTKALAQDQLRALLAMTKAFDASIDI--GVYDGDTTQKDRMWLRDNARLLITNP 359
A+Y+FPTKALAQDQ R+L +M D+ +DGDT+ DR ++RD AR++ TNP
Sbjct: 414 RAMYIFPTKALAQDQRRSLKSMLSYMTDLSDVVCETFDGDTSFPDRNYIRDEARIIFTNP 473
Query: 360 DMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTA 419
DMLH++ILP + L NLR +VV+DE H Y G FG H A
Sbjct: 474 DMLHLTILPQEEAWRTFLKNLR-------------------YVVMDELHVYNGLFGAHVA 514
Query: 420 LILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVL 479
LI+RRL R+C+ V + F+ +AT ANP EH + + ++L+ DGSPC +K F+
Sbjct: 515 LIMRRLRRICAAVGNRNVKFISCSATVANPEEHMRTIFGIEDVKLVDFDGSPCGRKEFLC 574
Query: 480 WNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHG 525
WN T D + + E + LF ++V G
Sbjct: 575 WN-------------TPYKDPADPTSGRGDSFIETARLFCQLVLRG 607
>gi|407916769|gb|EKG10099.1| Helicase [Macrophomina phaseolina MS6]
Length = 1173
Score = 459 bits (1182), Expect = e-126, Method: Compositional matrix adjust.
Identities = 270/767 (35%), Positives = 414/767 (53%), Gaps = 69/767 (8%)
Query: 205 EMVEHLRKGIGSQGQMVHVED--ISARKAVLVEIPDALLDNTKSALKST-GISKLYSHQA 261
E++E ++K GQ+V ++ + ++ L N +AL +T I +LY+HQA
Sbjct: 319 EIIEEIKKLEWYTGQIVPDGHRVFDPQEPIYGDLTFQLSQNLVNALYNTRNIERLYAHQA 378
Query: 262 ESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALL 321
E+I G NV+V+T TSSGKSL Y +PVL L D + A+Y+FPTKALAQDQ R+L
Sbjct: 379 EAINNLFEGHNVIVSTSTSSGKSLIYQIPVLHELEKDHHTRAMYIFPTKALAQDQRRSLK 438
Query: 322 AMTKAFDASIDIGV--YDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSN 379
+ + D DI V +DGDT R ++RD AR++ TNPDMLH++ILP + L N
Sbjct: 439 DILRFMDGLQDIVVETFDGDTPFTSRNYIRDEARIIFTNPDMLHITILPQEESWRTFLQN 498
Query: 380 LRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSF 439
L+ FVV+DE H Y G FG H ALI+RRL R+C+ + + F
Sbjct: 499 LK-------------------FVVVDELHVYNGLFGSHMALIMRRLRRICAALGNNKVQF 539
Query: 440 VFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDD 499
+ +AT +NP+EH + + + L DGSP +K F+ WN T D
Sbjct: 540 ISCSATVSNPKEHMKTIFGVEQVRLTDFDGSPSGRKEFICWN-------------TPFKD 586
Query: 500 TRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTR-EILEETAPHLVD 558
+ + ++E + LF +++ G+R IAFCR RK CE ++S + E+ P +++
Sbjct: 587 PGDPTSGRGDTMAEAAKLFCQLILRGVRVIAFCRVRKQCEGLISAVKTELNNLERPEIMN 646
Query: 559 SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLW 618
+ YR GY +DRR+IE++ F GKL G+ ATNALELG+D+G +D + +GFP +IA+L
Sbjct: 647 RVMAYRGGYTPQDRRQIEKEMFDGKLVGIVATNALELGVDIGSLDAVITVGFPYTIANLR 706
Query: 619 QQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCA 678
QQ+GR+GRR + SL+V V P DQY+M+ P+++F P +D +N LE H+ CA
Sbjct: 707 QQSGRAGRRNKDSLSVLVGDCFPTDQYYMQNPDEIFTKPNAELQVDLENMLCLEGHIQCA 766
Query: 679 ALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKM---PSHT 735
A E P+ D KYFG LS+ + L+ Y +E+ PS
Sbjct: 767 AHEMPIRPDEDAKYFGPLLSTIAAERMRKDDLNF------------YHCNERFLPRPSQH 814
Query: 736 ISIRAIESERYEVIDMQS--NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKI 793
++IR E + + +ID + N VLEE+E S+AFF +YEG +++HQG++YLVKE +
Sbjct: 815 VAIRDTEEDHFAIIDTTNGRNAVLEELEASRAFFTIYEGGIFLHQGNSYLVKEFLPDQML 874
Query: 794 ALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRL 853
A ++ + + T+ RD+TD+ + +I +++ A + FGF+++
Sbjct: 875 AKVERVTVDWTTQQRDFTDV-----DPIETEQIRTIPGSRSRAFCGPIRIKQVVFGFFKV 929
Query: 854 WRGSGIIFDTVELYLPKYSYESQAVWIQVP-QSVKAVVEQNFSFRSGLHAASHALLHVVP 912
+ I+ D V + P S+ +W+ VP Q++ + E+ +HAA HA+L ++P
Sbjct: 930 DKRRRIL-DAVAVDNPPIVIMSRGMWLDVPRQALDILKERRLHVGGAIHAAEHAVLSLMP 988
Query: 913 IYVRCNFSDLAPECPNP-------HDSRYFPERILLYDRHPGGTGVS 952
+V D+ EC + SR P R+ YD G TG
Sbjct: 989 NFVISLPGDVRTECKSALKEFAARESSRKRPARLTFYDAKGGATGAG 1035
>gi|71009421|ref|XP_758270.1| hypothetical protein UM02123.1 [Ustilago maydis 521]
gi|46098012|gb|EAK83245.1| hypothetical protein UM02123.1 [Ustilago maydis 521]
Length = 1510
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 276/726 (38%), Positives = 419/726 (57%), Gaps = 73/726 (10%)
Query: 246 SALKST-GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSAL 304
+AL +T GI + YSHQAE++ A KNV+V+T TSSGKSL Y LPVL A+ D ++A+
Sbjct: 674 NALYATHGIEEFYSHQAEALNALHEKKNVIVSTSTSSGKSLIYQLPVLGAIEQDGEATAM 733
Query: 305 YMFPTKALAQDQLRAL---LAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDM 361
++FPTKALAQDQ R+L +A + + +I + YDGDT ++ R +R+ A ++ TNPDM
Sbjct: 734 FIFPTKALAQDQRRSLQDLIANCERVEGAI-VATYDGDTDKELRKDIRERASVIFTNPDM 792
Query: 362 LHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALI 421
LH SILP + R L NLR +VV+DE H Y G FG H + I
Sbjct: 793 LHQSILPSEDLWRRFLRNLR-------------------YVVVDELHIYNGLFGAHVSFI 833
Query: 422 LRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWN 481
+RRL R+CS + FV +AT ANP++H L + + ++ DGSP +K +++WN
Sbjct: 834 MRRLRRICSALGNRTVQFVSCSATVANPKQHMQTLFGVEHVHVVTQDGSPAGRKEWLVWN 893
Query: 482 PTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELV 541
P +D++ A + SS +EVS +F ++Q G+R I F + R+ CE+V
Sbjct: 894 PPY------------IDESDPAQGRVSS-YAEVSKVFRHLIQRGVRTIIFTKVRRTCEIV 940
Query: 542 LSYTR-EILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVG 600
+ R ++L E P + + + YR+GY A+DRR+IE+D F G+L G+ AT+ALELGID+G
Sbjct: 941 MRQIRNDLLLEDRPDVANKVMSYRSGYSAQDRRKIEQDMFKGQLLGIVATSALELGIDIG 1000
Query: 601 HIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIEC 660
+D + LGFP SI+SL QQAGR+GRR++ SL+V + P+DQ++M +P+++F P
Sbjct: 1001 SLDAVIMLGFPYSISSLRQQAGRAGRRQKDSLSVLIGDPWPMDQHYMHFPDEIFLQPDAA 1060
Query: 661 CHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSA 720
+D N +LE HL CAA E P++L DE+YFG L+ T K R L++ A
Sbjct: 1061 LSVDLANDFILESHLQCAAEEMPITLEDDEQYFGPHLA---TLCKTR--------LETDA 1109
Query: 721 KIFEYIGHE--KMPSHTISIRAIESERYEVID-----MQSNEVLEEIEESKAFFQVYEGA 773
F Y E P+ ++IR + Y ID EV+EE+E +A F+ YEGA
Sbjct: 1110 SGFFYCRQELRPNPARDVAIRGARQDSYCYIDDTPGRAGGAEVMEEVEIERAIFEAYEGA 1169
Query: 774 VYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYAT-KISKDQLT 832
V+MHQG +Y+ +E++ ++IA +AD+ Y T+ RD+TD +A T +I + + +
Sbjct: 1170 VFMHQGLSYICREISHETRIARMVQADVNYHTRPRDHTD------TDAVETYRIRRLRES 1223
Query: 833 KTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQ-SVKAVVE 891
A T+ + +G++++ R + I+ D VE+ P + ++ +WI VP V A+ +
Sbjct: 1224 VDLAYYGKVTIASYVWGYFKVDRRANIL-DAVEVDCPPFIRHTRGLWIDVPTWLVDAMTD 1282
Query: 892 QNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPEC-------PNPHDSRYFPERILLYDR 944
+ + + +HAA HALL + P++V D+ EC SR P R++ YD
Sbjct: 1283 KRINAAAAIHAAEHALLSLTPMFVVSVAGDVRTECKIAEKEYAAKPSSRKRPARLIFYD- 1341
Query: 945 HPGGTG 950
PG G
Sbjct: 1342 MPGQNG 1347
>gi|296141550|ref|YP_003648793.1| hypothetical protein [Tsukamurella paurometabola DSM 20162]
gi|296029684|gb|ADG80454.1| Protein of unknown function DUF1998 [Tsukamurella paurometabola DSM
20162]
Length = 795
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 270/784 (34%), Positives = 415/784 (52%), Gaps = 65/784 (8%)
Query: 175 VKRARRSQSSTSSSHSFQRRCSDKSQLLPLEMVEHLRKGIGSQGQ-MVHVEDISARKAVL 233
+ RA S ++ ++F R E++ ++ G G G + HV DI +R+A
Sbjct: 13 IGRASASGANALEHNTFGR-----------ELLHRIQAGTGPAGDGLTHVADIPSRRAEF 61
Query: 234 VEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLE 293
+ P L N + +G+ + + HQ E+ + AG++VV++T T+SGKSL Y LPVL
Sbjct: 62 AQWPQWLPSNIRDGFIESGVERPWRHQIEAAEHAHAGRHVVISTGTASGKSLAYQLPVLA 121
Query: 294 ALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDI--GVYDGDTTQKDRMWLRDN 351
L+ D ++ LY+ PTKAL DQ A L +T FD D+ +YDGDT+Q+ R W R +
Sbjct: 122 GLATDPRATVLYLSPTKALGTDQHAAALRLTSMFDGLGDVSPAMYDGDTSQEMRRWARSD 181
Query: 352 ARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYK 411
+R + TNPDM+H+ +LP H +++R L LR +VV+DE H Y+
Sbjct: 182 SRWVFTNPDMIHVGMLPRHAKWARFLRGLR-------------------YVVVDECHHYR 222
Query: 412 GAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSP 471
G FG HTAL+LRRL R+ + YG++P+ + ++AT+++P L S ++ D SP
Sbjct: 223 GVFGSHTALVLRRLLRVAAK-YGAEPTVICASATTSDPAGAASRLIG-SDCVAVETDSSP 280
Query: 472 CAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAF 531
+ VLW P D++ N A +E + + A++V G R +AF
Sbjct: 281 HGPRTVVLWEPPLI---------PDLEG-ENGAPVRRQATTEAARMMADLVVEGARTLAF 330
Query: 532 CRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATN 591
RSR+ E V TR +L E P L + YRAGY+AEDRR +ER G+L VA TN
Sbjct: 331 VRSRRSAETVALSTRRMLAEATPELASRVAAYRAGYLAEDRRALERGLNDGELLAVATTN 390
Query: 592 ALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPE 651
ALELG+D+ +D L GFPG++AS WQQAGRSGRR + SL + +A + PLD Y + +PE
Sbjct: 391 ALELGVDIAGLDAVLMAGFPGTVASFWQQAGRSGRRGQGSLILLIARDDPLDTYLVHHPE 450
Query: 652 KLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLS 711
L P+E D N VL L+CAA E PL+ E+ G + L G L
Sbjct: 451 SLLGRPVEATITDPWNPYVLGPQLLCAAGELPLT---REEVTALGAVDVVGRLTADGLLR 507
Query: 712 SDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYE 771
P A F G + P ++IR +++ + +L ++ ++A VYE
Sbjct: 508 ERP-----AGYFLAAGID--PHARVNIRGGAGSEVLIVEELTGRLLGTVDFNRALSTVYE 560
Query: 772 GAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQL 831
GAV++HQG +Y+V EL+L +A+ + ++ T R+ +D+ V+G + ++L
Sbjct: 561 GAVHVHQGESYVVDELDLDEGLAMVHAEEPEWTTSAREDSDVRVTGVHQ-------TEEL 613
Query: 832 TKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQV-PQSVKAVV 890
TA+ ++ VT+ G+ R R +G + D VEL LP+ S +QA I + P ++ A
Sbjct: 614 GAVTARFVSVEVTSQVVGYLRTLR-TGEVLDAVELDLPETSLATQAALITIEPDALLAAG 672
Query: 891 EQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTG 950
+ LHAA HA + ++P+ C+ D+ H+ P I +YD +PGG G
Sbjct: 673 LAPEHWPGALHAAEHAAIGLLPLVASCDRWDIGGLSTAQHEDTGLPS-IFVYDGYPGGAG 731
Query: 951 VSKQ 954
+++
Sbjct: 732 FAER 735
>gi|348689930|gb|EGZ29744.1| hypothetical protein PHYSODRAFT_471348 [Phytophthora sojae]
Length = 822
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 294/813 (36%), Positives = 418/813 (51%), Gaps = 129/813 (15%)
Query: 217 QGQMVHVEDISARKAVLVEI-PDALLDNTKSAL-KSTGISKLYSHQAESIMASLAGKNVV 274
+ Q+VHVE +R+A ++ P L +AL K I +LYSHQ E+I A G+N V
Sbjct: 9 KNQIVHVERRRSREAQYRDLEPLQLSAQVCAALEKCYNIKQLYSHQFEAIEAIRRGENAV 68
Query: 275 VATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIG 334
++T T+SGKSL YN+P+L L D +++ +Y+FPTKALAQDQL++L +A + IG
Sbjct: 69 LSTATASGKSLAYNVPMLNMLLEDPNATFMYLFPTKALAQDQLKSLRRFLEAAKLPLHIG 128
Query: 335 -VYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVY 393
+DGDT K R + R+ +TNPDMLH++ILP H Q+ +LSNLR++
Sbjct: 129 ATFDGDTPMKSRSMVIRETRIFLTNPDMLHLTILPQHRQWKAVLSNLRIL---------- 178
Query: 394 LIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHC 453
V+DEAH Y+G FG H + + RRL RLC+ +YGS+P V +AT NP H
Sbjct: 179 ---------VVDEAHMYRGVFGSHVSCVFRRLFRLCA-LYGSNPQVVCCSATIQNPEAHF 228
Query: 454 MEL---------------------------ANL-----STLELIQNDGSPCAQKLFVLWN 481
+L NL L++I DG+P +KLF +WN
Sbjct: 229 RQLLPSLPPHPGDSTADDTSQVSAEENMGPPNLHFFRQRPLKVITEDGAPSVEKLFCVWN 288
Query: 482 PTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELV 541
P + N S+ + A T+S I + + + A +V+ + + FCR RKL ELV
Sbjct: 289 PKVAEVNAANSSKPGNEPENVEATLTTSSIFQGARILARLVEAEIATLLFCRGRKLTELV 348
Query: 542 LSYTREIL--EETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDV 599
L IL + L+ + YR GY + RRRIE+ F G L GV ATNALELGID+
Sbjct: 349 LMNVHSILKADPNTAKLLRRVSSYRGGYTLDARRRIEQRLFSGDLLGVVATNALELGIDI 408
Query: 600 GHIDVTLHLGFPGSIASLWQQAGRSGRR-----ERPSLAVYVAFEGPLDQYFM--KYPEK 652
G +D T+HLG P SIASLWQQAGR+GRR ++ S+A+ V F+ PLDQ+F ++ K
Sbjct: 409 GELDCTIHLGLPSSIASLWQQAGRAGRRQGQSKQKQSVAIIVCFDAPLDQHFAQKQHATK 468
Query: 653 LFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSS 712
LF+ E ++ NH+VL QHL+CAA E S +Y + S
Sbjct: 469 LFQLEPEAVSLNTMNHRVLGQHLLCAARE---SALYSPQ-------------------SG 506
Query: 713 DPSLDSSAKIFE---------YIGHEKMPS--HTISIRAIESERYEVI--------DMQS 753
+DS K+ E Y H MP +S+R+I E Y V+ D
Sbjct: 507 TAYIDSYRKLMECSEAGGHTNYRIHSCMPKKFRAVSLRSICDENYTVVVPSNNVTTDGAD 566
Query: 754 NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKA--DLKYFTKTRDYT 811
EVL+EI +AFFQVY AVY+HQ YL+ LN +IA +K L YFT RD T
Sbjct: 567 GEVLDEIPGDRAFFQVYPTAVYLHQAQEYLITRLNNVQRIAFAKKCLQPLTYFTTCRDLT 626
Query: 812 DIHVSGGNNAYATKISKDQLTKTTAQALAC----TVTTTWFGFYRLWRGSGIIFDTVELY 867
DI V+ ++A AL C ++ T FG L + + T E
Sbjct: 627 DIEVTAKSDA----------------ALICVGTVSILTRVFGSTMLEKRTMRALGTNEFS 670
Query: 868 LPKYSYESQAVWIQVPQSVKAVVEQ--NFSFRSGLHAASHALLHVVPIYVRCNFSDLAPE 925
LP +AVW++ P ++ VE S+ + LH H + +V ++V C+ D+ E
Sbjct: 671 LPPMQSFGEAVWLEFPAVLRKQVEATGGASWTAALHGVGHLFVSLVRLFVLCDADDVGTE 730
Query: 926 CPNPHDSRYFPERILLYDRHPGGTGVSKQVTDM 958
N + R P R+ +++R GG+G+ ++ M
Sbjct: 731 HVNEFEQRVKPNRVTIFERREGGSGLVPEIVKM 763
>gi|295657916|ref|XP_002789522.1| DEAD/DEAH box helicase [Paracoccidioides sp. 'lutzii' Pb01]
gi|226283277|gb|EEH38843.1| DEAD/DEAH box helicase [Paracoccidioides sp. 'lutzii' Pb01]
Length = 1205
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 322/981 (32%), Positives = 497/981 (50%), Gaps = 128/981 (13%)
Query: 43 LSHVKGALNQLEKFGVRVGIEDIENLAVLCPKVVQFANDD---------MESKNHDDSIV 93
++K A+ + + G R+ +ED+ + VL P+ V+F + D E+K +
Sbjct: 146 FDNIKAAV-EAQTGGRRLSVEDVARVKVLIPRSVRFESVDRGVIDLVGVKEAKITRGGKI 204
Query: 94 IINVSTE----ERDKVEDNLGSGQKAISLSK-IFNAMKK-------RERSFKTNLWEAV- 140
+ E + D E G+K + L + ++ +KK R++S + +L V
Sbjct: 205 WRDWEAEGMGQDSDTNEGAAHDGEKEVLLFEFVYGELKKEIQQPTSRKKSKEEDLRMPVY 264
Query: 141 --NLLMCKLQKRVMSLS--VEDLLTYVKERRTD-VRGNEVKRAR------RSQSSTSSSH 189
+M ++KR + V+ L K D V E + + RS ST +
Sbjct: 265 SQKHMMGLIEKRNRKFADAVDAFLVKCKGEDIDPVEKLEADKEKFMSELARSGKSTPTIA 324
Query: 190 SFQRRCSDKSQLLPLEMVEHLRKGIGSQGQMVHVED--ISARKAVLVEIPDALLDNTKSA 247
+ + Q + E++ ++++ GQ+V I ++ AV + AL + +A
Sbjct: 325 RLPAQIPRERQTI-AEIIANIKEMEWYTGQIVPDGHRVIDSQAAVYGNLKFALSQSLINA 383
Query: 248 LKST-GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYM 306
L +T GI++ YSHQAESI G NV+V+T TSSGKSL Y +P+L L D S +Y+
Sbjct: 384 LYNTRGITQFYSHQAESINNLHDGHNVIVSTSTSSGKSLIYQVPMLHELEQDPQSRGMYI 443
Query: 307 FPTKALAQDQ---LRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLH 363
FPTKALAQDQ L+ LL + + ++ + +DGDT +DR +RD AR++ TNPDMLH
Sbjct: 444 FPTKALAQDQRRSLKELLGYIEGLEHTL-VETFDGDTPIEDRNTIRDEARIIFTNPDMLH 502
Query: 364 MSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILR 423
++ILP+ + L NL+ FVV+DE H Y G FG H A ++R
Sbjct: 503 ITILPHESCWRTFLKNLK-------------------FVVVDELHVYNGLFGSHIAFVMR 543
Query: 424 RLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPT 483
RL R+C+ V F+ +AT ANP EH + + + L DGSP +K F+ WN
Sbjct: 544 RLRRVCAAVGNRHVRFISCSATVANPEEHMKTIFGIDDVMLTDIDGSPSGRKEFICWN-- 601
Query: 484 SCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLS 543
T D + ++ + I E + LF +++ G+R IAFCR RK CEL+LS
Sbjct: 602 -----------TPFRDPGDPSSGRGNSIRETACLFCQLILRGVRVIAFCRIRKQCELLLS 650
Query: 544 YTR-EILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHI 602
R E P + + YR GY +DRR+IERD F GKL G+ ATNALELG+D+G +
Sbjct: 651 AVRDEFRNLDRPSVSKFVMGYRGGYSPQDRRKIERDMFEGKLLGIVATNALELGVDIGSL 710
Query: 603 DVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCH 662
D + LGFP SI++L QQ+GR+GRR + S+++ V DQY+M+ P++LF P
Sbjct: 711 DAVITLGFPYSISNLRQQSGRAGRRNKDSVSILVGDSNATDQYYMQNPDELFTKPNCELQ 770
Query: 663 IDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTL---KNRGYLSSDPSLDSS 719
+D QN VLE H+ CAA E P+ D KYFG+ L +T N G+
Sbjct: 771 VDLQNELVLEGHVQCAAFEMPIRPDEDIKYFGAQLHEFASTRLIKDNLGF---------- 820
Query: 720 AKIFEYIGHEK---MPSHTISIRAIESERYEVIDMQSNE--VLEEIEESKAFFQVYEGAV 774
Y HE+ +P+ ++IR Y VID +N+ ++EE+EES+ FF +YEG +
Sbjct: 821 -----YHCHERFLPLPARCVAIRDTTDNHYAVIDTTNNQNAIIEELEESRVFFSIYEGGI 875
Query: 775 YMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKT 834
+ HQG+ YL+KELN+ + A + + + T+ RD+TDI + +IS++ T
Sbjct: 876 FFHQGNPYLIKELNIDRRFARVVRVHVDWTTRQRDFTDIDPT--ETEAIRRISRE--CNT 931
Query: 835 TAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVE-QN 893
A A + T +GF++L + G I D V L S+ +W+ +P+ +++ +N
Sbjct: 932 RAFFGAIKIRTLVYGFFKLDK-KGRILDAVALDSQPIETLSKGMWLDIPRKALEILKSRN 990
Query: 894 FSFRSGLHAASHALLHVVPIYVRCNFSDLAPEC------------------------PNP 929
+ + +HAA HA+L ++P Y+ D+ EC P P
Sbjct: 991 LNAAAAIHAAEHAILALLPTYIISLPGDVRTECKVAIKELGPKHKQAISHARSKDVPPPP 1050
Query: 930 HDSRYFPERILLYDRHPGGTG 950
+R P R+ YD G +G
Sbjct: 1051 KPARQRPARLTFYDAKGGSSG 1071
>gi|156742930|ref|YP_001433059.1| helicase superfamily protein [Roseiflexus castenholzii DSM 13941]
gi|156234258|gb|ABU59041.1| Helicase superfamily 1 and 2 ATP-binding [Roseiflexus castenholzii
DSM 13941]
Length = 862
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 278/771 (36%), Positives = 431/771 (55%), Gaps = 71/771 (9%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
+ ++ LR G Q+VHVE + AR A E L +AL + GIS+LY+HQA ++
Sbjct: 8 DFIDILRSARGYNNQIVHVERLPARAARYAEPSAPLPPPLAAALAARGISRLYTHQAAAL 67
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
A+ AG +V + T T+SGK+LCY LP +EA D ++ AL++FPTKALA DQLRAL +
Sbjct: 68 DAARAGLHVGIVTATASGKTLCYQLPTIEATLSDPAARALFLFPTKALAADQLRALYTLL 127
Query: 325 KAFDAS----IDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNL 380
A A+ + DGDT + R +R A ++++NPD+LH ++LP H ++ +L+ L
Sbjct: 128 DALKAAGGPALMAATLDGDTPRATRDRVRAGASIILSNPDLLHRTLLPDHARWQSVLAQL 187
Query: 381 RLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFV 440
R FVV+DEAH Y+G FG H ALI+RRL RLC+H YGS P F+
Sbjct: 188 R-------------------FVVLDEAHTYRGVFGTHVALIMRRLRRLCAH-YGSAPQFI 227
Query: 441 FSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPT--------SCLRSVLNK 492
+ATSANP+ H L + +I +DG+P ++ F+ WNP + +R++L +
Sbjct: 228 CCSATSANPQHHLAALIG-DEVRVIDDDGAPQGERTFLFWNPPVIDNQRVPTWMRTLLPE 286
Query: 493 SQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEE- 551
N ++++ E + + A +V+ G++ +AF R+R+ ELVL Y RE L+
Sbjct: 287 ---------NGQRRSTN--VETANVLATLVRAGVKTLAFARTRRSAELVLRYARETLDNG 335
Query: 552 --------TAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHID 603
+ L + I YRAGY EDRRR+E+ F G L G+ +TNALELG+D+G +D
Sbjct: 336 DSVENGHNPSMPLAEQIAAYRAGYTVEDRRRLEQAFARGDLRGLVSTNALELGVDIGGVD 395
Query: 604 VTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHI 663
+ GFPG+IAS WQQAGR+GR + SLA VA + PLDQ++M++P + F P E I
Sbjct: 396 AVVIGGFPGTIASAWQQAGRAGRAQGKSLAALVAQDDPLDQFYMRHPAEFFCRPHEHARI 455
Query: 664 DAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIF 723
N +L L CAA E PL D+ +FG+ + L RG +++ P D A
Sbjct: 456 ALDNPYILRDQLRCAAAELPLH-DADDLWFGATFAKLRDWLLQRGEVTTRP--DGRAA-- 510
Query: 724 EYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYL 783
Y G + +H ++IR+ + ++ID+ + +E+I ++A F+V+ GAVYMHQG+TY+
Sbjct: 511 -YAGDPRPAAH-VNIRSADGNPIDLIDIDTGRRIEQIAATRAPFEVFPGAVYMHQGNTYV 568
Query: 784 VKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTV 843
V+ L+S+ AL ++A ++Y+T+T D T+I A + Q+ TT V
Sbjct: 569 VEA--LTSRQALARRAQIEYYTRTIDETEI-------AVRQVRQQRQVGPTTLALGVVDV 619
Query: 844 TTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSV-KAVVEQNFSFRSGLHA 902
T G+ R + + EL +P ++ + AVW + S + + + S LHA
Sbjct: 620 TRQVVGYKRKKHYTDDVISEHELTMPPQTFRTIAVWWTISDSACRQIAQVCDSVLDALHA 679
Query: 903 ASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSK 953
HA++ ++P++ +C+ +D+ + H I +YD PGG G+++
Sbjct: 680 MEHAVIGLLPLFAQCDRADIGGLSTDAHPD-TGAATIFVYDGVPGGVGIAE 729
>gi|83774909|dbj|BAE65032.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391864998|gb|EIT74290.1| putative ATP-dependent RNA helicase [Aspergillus oryzae 3.042]
Length = 1163
Score = 457 bits (1176), Expect = e-125, Method: Compositional matrix adjust.
Identities = 270/714 (37%), Positives = 394/714 (55%), Gaps = 65/714 (9%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKST-GISKLYSHQAESIMASLAGKNVVVATMTSSGKS 284
I A+ A+ E+ L N +AL +T GI++ YSHQAE+I G NV+V+T TSSGKS
Sbjct: 348 IDAQPAIHGELAFKLSQNLVNALYNTRGITQFYSHQAEAINHLYEGHNVIVSTSTSSGKS 407
Query: 285 LCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRA---LLAMTKAFDASIDIGVYDGDTT 341
L Y +P+L L +D S LY+FPTKALAQDQ R+ LL + ++ + +DGDT
Sbjct: 408 LIYQVPMLHELENDHDSRGLYIFPTKALAQDQRRSMKDLLQYMEGLQHTM-VETFDGDTP 466
Query: 342 QKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRF 401
++R +RD AR++ TNPDMLH+++LP + L NL+ F
Sbjct: 467 MENRNIIRDEARIIFTNPDMLHITVLPQESAWRTFLKNLK-------------------F 507
Query: 402 VVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLST 461
VV+DE H Y G FG H A ++RRL R+C+ V F+ +AT ANP +H + +
Sbjct: 508 VVVDELHVYNGLFGSHVAFVMRRLRRICAAVGNRHVRFISCSATVANPEDHMKAIFGVED 567
Query: 462 LELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEM 521
++LI DGSP +K F+ WN T D + + ++E + LF ++
Sbjct: 568 VKLIDFDGSPSGRKEFICWN-------------TPFKDPGDPTSGRGDSVAETARLFCQL 614
Query: 522 VQHGLRCIAFCRSRKLCELVLSYTR-EILEETAPHLVDSICVYRAGYVAEDRRRIERDFF 580
+ G R IAFCR RKLCE++L R E P + + + YR GY +DRR+IE++ F
Sbjct: 615 ILRGARVIAFCRIRKLCEVLLQAVRAEFQNLDRPEIGNLVMGYRGGYSPQDRRKIEKEMF 674
Query: 581 GGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEG 640
GKL G+ ATNALELG+D+G +D + LGFP SI++L QQ+GR+GRR + SL+V V
Sbjct: 675 EGKLMGIVATNALELGVDIGSLDAVITLGFPYSISNLRQQSGRAGRRNKDSLSVLVGDRY 734
Query: 641 PLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSG 700
P DQY+MK PE+LF P +D N +LE H+ CAA E P+ D YFG L
Sbjct: 735 PTDQYYMKNPEELFTKPNCELQVDLANELILEGHIQCAAFEMPIRPNEDSIYFGQQLPEF 794
Query: 701 ITTLKNRGYLSSDPSLDSSAKIFEYIGHEKM---PSHTISIRAIESERYEVIDMQS--NE 755
T + L Y HE+ PS +SIR E + + VID + N
Sbjct: 795 AATRLTKDALGF------------YHCHERFRPQPSRCVSIRDTEDQHFAVIDTTNARNI 842
Query: 756 VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHV 815
VLEE+E S+AFF +YEG +++HQG TYLVKELN S+ A + + + T RDYTDI
Sbjct: 843 VLEEVEASRAFFTIYEGGIFLHQGQTYLVKELNPDSRFARVVRVHVDWNTMQRDYTDI-- 900
Query: 816 SGGNNAYATKISKDQLTKTTAQAL--ACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSY 873
+ T + TT++A A + +GF+++ + G + D V + P
Sbjct: 901 ----DPIETDTIRQISPTTTSRAFYGAVRIHAVVYGFFKIDK-RGRVLDAVAVDNPPIDI 955
Query: 874 ESQAVWIQVPQSVKAVVE-QNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPEC 926
++ +W+ VP+ ++E ++ + + +HAA HA+L ++P +V + D+ EC
Sbjct: 956 LTKGMWLDVPKRALEILESRHLNIAAAIHAAEHAVLSLLPTFVISSPGDVRTEC 1009
>gi|406865600|gb|EKD18641.1| DEAD/DEAH box helicase [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 1176
Score = 456 bits (1173), Expect = e-125, Method: Compositional matrix adjust.
Identities = 268/730 (36%), Positives = 404/730 (55%), Gaps = 82/730 (11%)
Query: 250 STGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPT 309
+ I++LY+HQAE+I G +VVV+T TSSGKSL Y LPVL L D ++ A+Y+FPT
Sbjct: 376 TKNITQLYAHQAEAINNLHDGHHVVVSTSTSSGKSLIYQLPVLHELEKDHNTRAMYIFPT 435
Query: 310 KALAQDQLRALLAMTK---AFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSI 366
KALAQDQ R+L M + + +I + +DGDT DR +R+ R++ITNPDMLH++I
Sbjct: 436 KALAQDQRRSLKEMMRFMTGLEQTI-VETFDGDTPMSDRNLIREEGRIIITNPDMLHITI 494
Query: 367 LPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLC 426
LP ++ L NL+ +VV+DE H Y G FG H ALI+RRL
Sbjct: 495 LPQEEKWRTFLQNLK-------------------YVVVDEIHVYNGLFGSHVALIMRRLR 535
Query: 427 RLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCL 486
R+C+ V F+ +AT ANP EH + + ++L DGSP +K F+ WN
Sbjct: 536 RICAAVGNRHIKFISCSATVANPMEHFKTIFGIEDVKLTDFDGSPSGRKEFLCWN----- 590
Query: 487 RSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCE-LVLSYT 545
T D + A+ ++E + LF +++ G+R IAFCR RK CE LV +
Sbjct: 591 --------TPFKDPGDPASGRGDTMAEAARLFCQLILRGVRVIAFCRIRKGCEVLVGAVK 642
Query: 546 REILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVT 605
+E+ + + YR GY +DRRRIE + F GKL G+ AT ALELG+D+G +D
Sbjct: 643 QELANLERSECMARVMGYRGGYTPQDRRRIESEMFEGKLMGIVATTALELGVDIGSLDAV 702
Query: 606 LHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDA 665
+ +GFP SI++L QQ+GR+GRR + SL+V + P DQ++M+ P+++F P +D
Sbjct: 703 ITVGFPYSISNLRQQSGRAGRRNKDSLSVLIGDCFPTDQFYMQNPDEIFTKPNCELQVDL 762
Query: 666 QNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEY 725
QN VLE H+ CAA E P+ D YFG L P L I +
Sbjct: 763 QNLLVLEGHVQCAAYEMPIRPNEDSAYFGKML----------------PELAEERMIKDE 806
Query: 726 IG----HEK---MPSHTISIRAIESERYEVIDMQ--SNEVLEEIEESKAFFQVYEGAVYM 776
+G H++ +PS +SIR E + + +I++ N VLEE+E S+AFF +Y+G +++
Sbjct: 807 LGFYHCHDRFRPLPSKYVSIRDTEEDHFAIINITHGQNVVLEELEASRAFFTLYDGGIFL 866
Query: 777 HQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTA 836
HQG+TYLVKE N KIA + + + T+ RD+TDI + T+ + ++ K+ +
Sbjct: 867 HQGNTYLVKEFNPERKIAKVELVKVDWTTQQRDFTDI------DPIETEAIR-RIPKSLS 919
Query: 837 QAL--ACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVP-QSVKAVVEQN 893
+A + T FGF+++ + I+ D V++ P S+ +W+ VP Q+++ +V +
Sbjct: 920 RAFYGQIKIQQTVFGFFKIDKRRRIL-DAVQVDNPPVVIFSKGMWLDVPKQALEILVGRR 978
Query: 894 FSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHD-------SRYFPERILLYDRH- 945
+ +HAA HA+L ++P +V D+ EC P SR P R+ YD
Sbjct: 979 LNVAGAIHAAEHAILSLMPNFVVSMPGDVRTECKVPQKEFAQKETSRKRPARLTFYDAKG 1038
Query: 946 -PGGTGVSKQ 954
GG+G+S +
Sbjct: 1039 GAGGSGISTK 1048
>gi|300088083|ref|YP_003758605.1| DEAD/DEAH box helicase [Dehalogenimonas lykanthroporepellens
BL-DC-9]
gi|299527816|gb|ADJ26284.1| DEAD/DEAH box helicase domain protein [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 772
Score = 456 bits (1173), Expect = e-125, Method: Compositional matrix adjust.
Identities = 271/759 (35%), Positives = 408/759 (53%), Gaps = 57/759 (7%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E V LR G + H E I AR+ E AL L G LY HQA ++
Sbjct: 7 EFVTFLRASGEMSGTLAHFESIPAREGRFREPASALDPRLAVRLNERGRWPLYLHQALAV 66
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAM- 323
A+++G+NV +AT +SGKSL Y +PV+++L + ++ LY+ PTKAL QDQ R +
Sbjct: 67 DAAMSGRNVFIATPAASGKSLGYQIPVVQSLLENPRTTVLYLAPTKALEQDQCRHFRELF 126
Query: 324 TKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLI 383
+ G+ DGDT +R +R + R L++NPDMLH+SILP H Q+ R LSNL+
Sbjct: 127 CPGLIGDSEFGIIDGDTPGGERATIRRSTRFLLSNPDMLHVSILPRHQQWRRFLSNLK-- 184
Query: 384 AFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFST 443
+VVIDEAH Y+G FG H ALILRRL YG+ P F+ ++
Sbjct: 185 -----------------YVVIDEAHQYRGVFGSHLALILRRLR-RLCRRYGATPQFILAS 226
Query: 444 ATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNA 503
AT N E L +E++ DG+P K F+ WNP + D +
Sbjct: 227 ATIDNAAEFGRALVG-EPVEVVDQDGAPYGGKDFIFWNPP-------------LTDPARS 272
Query: 504 ANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVY 563
+++S +E + LFAE V G+R +AF R+R+L E++ + R+ L AP + I Y
Sbjct: 273 QRRSAS--AEATVLFAEAVARGIRTLAFARTRRLAEVMSVHARDRLTRQAPEQAERIKAY 330
Query: 564 RAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGR 623
RAGY+AEDRRRIE++ F G+L G AT+ALELGID+G ++ T+ G+PGSIAS WQQAGR
Sbjct: 331 RAGYLAEDRRRIEQELFNGRLTGAVATSALELGIDIGDLEATILTGYPGSIASAWQQAGR 390
Query: 624 SGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHP 683
SGRR + S+++ VA PLDQYFM++P F E ++ N ++++ HL CAA E P
Sbjct: 391 SGRRAQRSVSIMVARNDPLDQYFMRHPSFFFGRSSEAALVNPDNIQIMDAHLRCAAWELP 450
Query: 684 LSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIES 743
L+ D YFG + L + G L+ A Y P+ +SIR +
Sbjct: 451 LT-GGDRDYFGEYHDERLAVLTDGGQLTQRRGAYYPATGLSY------PAGEVSIRGLGG 503
Query: 744 ERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKY 803
Y VID ++ +LE ++ A FQ++ GAVY+HQG +Y+V+ L+ +++A ++ D Y
Sbjct: 504 TDYLVIDGKTGAMLERLDAHTALFQLFPGAVYLHQGESYIVRSLDGETRVADVERHDEGY 563
Query: 804 FTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALA-CTVTTTWFGFYRLWRGSGIIFD 862
+T+ RD TD+ V ++ + + + + +L VT T GF R + S +
Sbjct: 564 YTEARDITDLRV--------MRVLRHIMVRGHSVSLGEVAVTETVVGFRRKAQFSEEVLG 615
Query: 863 TVELYLPKYSYESQAVWIQVPQSVK---AVVEQNFSFRSGLHAASHALLHVVPIYVRCNF 919
L LP S+ + A+W ++ +++ + F GLHA HA + ++P+ C+
Sbjct: 616 EEPLDLPPQSFRTIALWFELSETMAESVGALGPGRDFAGGLHAVEHAAIGILPLRALCDR 675
Query: 920 SDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDM 958
+D+ H P + +YD H GG G++++ D+
Sbjct: 676 NDIGGLSTPLHPDTGAPT-VFIYDAHAGGVGIAEKGFDI 713
>gi|378727589|gb|EHY54048.1| hypothetical protein HMPREF1120_02225 [Exophiala dermatitidis
NIH/UT8656]
Length = 1156
Score = 454 bits (1167), Expect = e-124, Method: Compositional matrix adjust.
Identities = 259/710 (36%), Positives = 384/710 (54%), Gaps = 65/710 (9%)
Query: 250 STGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPT 309
S GI++LYSHQAE+I G NV+V+T TSSGKSL Y +P+L L D S +Y+FPT
Sbjct: 364 SRGITQLYSHQAEAINNLHDGHNVIVSTSTSSGKSLIYQIPMLHELEKDPESRGMYIFPT 423
Query: 310 KALAQDQLRA---LLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSI 366
KALAQDQ R+ LL F+ +I + +DGDT K+R +RD R++ TNPDMLH++I
Sbjct: 424 KALAQDQRRSMKELLQYIPGFE-NILVETFDGDTPMKERNMIRDEGRIIFTNPDMLHITI 482
Query: 367 LPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLC 426
LP + L NL+ +VV+DE H Y G FG H A I+RRL
Sbjct: 483 LPQESGWRTFLRNLK-------------------YVVVDELHVYNGLFGAHVAFIMRRLR 523
Query: 427 RLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCL 486
R+C+ + F+ +AT ANP EH + + ++L DGSP +K F+ WN
Sbjct: 524 RICAALGNRKVKFISCSATVANPEEHMKTIFGVDNVKLTDFDGSPSGRKEFICWN----- 578
Query: 487 RSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTR 546
T D + ++ + +E + L +++ G+R IAFCR RK CE++L+ +
Sbjct: 579 --------TPYKDPGDPSSGRADTFAETARLICQLILRGVRTIAFCRVRKQCEVLLAAVK 630
Query: 547 -EILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVT 605
E P + YR GY A+DRRRIE + FGGKL G+ AT ALELG+D+G +D
Sbjct: 631 AEFTNLERPECAALVMGYRGGYSAQDRRRIEAEMFGGKLMGIVATTALELGVDIGSLDAV 690
Query: 606 LHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDA 665
+ +GFP +IA+L QQ+GR+GRR R SL+V V +DQY+M+ P+++F P +D
Sbjct: 691 ITMGFPYTIANLRQQSGRAGRRNRDSLSVLVGDSFAVDQYYMQNPDEIFTKPNCELQVDL 750
Query: 666 QNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEY 725
QN V+E H+ CAA E P+ D K+ G L + L A F +
Sbjct: 751 QNELVVEGHVQCAAFELPIQPDEDAKFLGKMLRD-----------ICEERLSKDAMGFYH 799
Query: 726 IGH--EKMPSHTISIRAIESERYEVIDMQ--SNEVLEEIEESKAFFQVYEGAVYMHQGHT 781
+PS ++IR E + + VID+ N VLEE+E S+AFF +Y+G +++HQG T
Sbjct: 800 CNERFRPLPSRCVAIRDTEEDHFAVIDITHGRNVVLEEVEASRAFFTLYDGGIFLHQGKT 859
Query: 782 YLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALAC 841
++VKE + K+A Q + + T+ RD+TD V ++S + LTK +
Sbjct: 860 FMVKEFSPERKMARVQLVKVDWTTQQRDFTD--VDPIETEQVRRVSANSLTKAFFGRI-- 915
Query: 842 TVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVE-QNFSFRSGL 900
V FGF+++ + I+ D V + P S+ +W+ +P+S + + + + +G+
Sbjct: 916 KVHAVVFGFFKVDQKRRIL-DAVAVDNPPIDIFSRGLWLDIPKSALEIFQLKRLNLAAGI 974
Query: 901 HAASHALLHVVPIYVRCNFSDLAPECPNP-------HDSRYFPERILLYD 943
HAA HAL+ ++P +V D+ EC N R P R+ YD
Sbjct: 975 HAAEHALMSLMPQFVVSMPGDVRTECKNALKEFAKRETQRKRPARLTFYD 1024
>gi|148657034|ref|YP_001277239.1| DEAD/DEAH box helicase [Roseiflexus sp. RS-1]
gi|148569144|gb|ABQ91289.1| DEAD/DEAH box helicase domain protein [Roseiflexus sp. RS-1]
Length = 868
Score = 454 bits (1167), Expect = e-124, Method: Compositional matrix adjust.
Identities = 279/773 (36%), Positives = 424/773 (54%), Gaps = 70/773 (9%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
+ VE LR G GQ+ H+E + AR A E L +AL + GI++LY+HQA ++
Sbjct: 3 DFVELLRGARGYAGQIAHIERLPARAARFAEPSAPLPQPLAAALAARGITRLYTHQAAAL 62
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
A+ AG ++ + T T+SGK+LCY LP +EA D ++ AL++FPTKALA DQLRAL ++
Sbjct: 63 DAARAGYHIGIVTATASGKTLCYQLPTIEAAITDHTACALFLFPTKALAADQLRALNSLL 122
Query: 325 KAFDAS----IDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNL 380
A A+ + DGDT + R LR A ++++NPD+LH ++LP H ++ IL+ L
Sbjct: 123 AALKAAGGPALTAATLDGDTPRPARDRLRTGAHVILSNPDLLHRTLLPDHARWQGILARL 182
Query: 381 RLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFV 440
R +VV+DEAH Y+G FG H ALI+RRL RLC+H YGS P F+
Sbjct: 183 R-------------------YVVLDEAHVYRGVFGTHVALIMRRLRRLCAH-YGSAPQFI 222
Query: 441 FSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDT 500
+ATSANP++H L + +I +DG+P + F+ WNP L Q M
Sbjct: 223 CCSATSANPQQHLAALVG-DEVRVIDDDGAPQGARTFLFWNPP------LTDRQRSMSWL 275
Query: 501 RNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHL---- 556
+ S+ + E + + A +V+ G++ +AF R+R+ ELVL Y RE LE AP
Sbjct: 276 SEQGQRRSTNV-ETASVLALLVRAGVKTLAFTRTRRSAELVLRYAREALENNAPPDNGRD 334
Query: 557 --------------VDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHI 602
I YRAGY E+RRR+E+ F GG L G+ +TNALELG+D+G +
Sbjct: 335 RSIRSDITETRQPDTGQIAAYRAGYTVEERRRLEQAFAGGDLRGLVSTNALELGVDIGGV 394
Query: 603 DVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCH 662
D + GFPG+IAS WQQAGR+GR + SLA VA + PLDQ++M++P + F P E
Sbjct: 395 DAVVMGGFPGTIASAWQQAGRAGRSQGQSLAALVAQDDPLDQFYMRHPAEFFSRPHEYAR 454
Query: 663 IDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKI 722
+ N +L + CAA E PL D+ +FG+ + L RG L++ P
Sbjct: 455 VALDNPYILRDQVRCAAAELPLH-DADDLWFGATFAKLRDWLLRRGELAALPD-----GR 508
Query: 723 FEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTY 782
F Y G + P+ ++IR+ + + ++ID+ ++ +E+I ++A F+V+ GAVYMHQG TY
Sbjct: 509 FAYAGDPR-PAAGVNIRSADGDPIDLIDIDTDRRIEQIAATRAPFEVFPGAVYMHQGDTY 567
Query: 783 LVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKD-QLTKTTAQALAC 841
+V E L+ + AL ++A ++Y+T+T D TDI + ++ + + T
Sbjct: 568 VVVE--LTPRRALARRARVEYYTQTLDETDITIE--------QVRQQCNIGPATLFLGVV 617
Query: 842 TVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNF-SFRSGL 900
VT G+ R + + +L +P ++ + AVW VP + VEQ L
Sbjct: 618 EVTRRVVGYRRKQHYTDEVLGEHDLTMPPQTFRTIAVWWTVPDPICRQVEQVCDGVIDAL 677
Query: 901 HAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSK 953
HA HA + ++P++ +C+ D+ + H I +YD PGG G+++
Sbjct: 678 HAMEHAAIGLLPLFAQCDRGDIGGLSIDVHPD-TGAATIFVYDGVPGGVGIAE 729
>gi|406607125|emb|CCH41513.1| putative ATP-dependent helicase HRQ1 [Wickerhamomyces ciferrii]
Length = 1103
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 265/775 (34%), Positives = 417/775 (53%), Gaps = 75/775 (9%)
Query: 195 CSDKSQLLPLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGIS 254
SD+ +P +++E++ K + Q+ + R A+ E+ L +N KS+L GI+
Sbjct: 232 VSDERPTIP-KLIENI-KTTRYRDQITGSYVLPERDAIYKELDFELSENLKSSL---GIN 286
Query: 255 KLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQ 314
YSHQAE++ A G+NV+++T TSSGKSL Y +PVL+ L H ++A+Y+FPTKALAQ
Sbjct: 287 GFYSHQAEALNAINKGENVIISTSTSSGKSLIYQIPVLDTLEHVPQATAMYIFPTKALAQ 346
Query: 315 DQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFS 374
DQ R+ + + + YDGDT DR ++ NAR++ TNPDM+H SILP H +
Sbjct: 347 DQKRSFQTLMNKMRLNALVDTYDGDTDASDRQHIKHNARVIFTNPDMVHTSILPNHQSWR 406
Query: 375 RILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYG 434
L L +R+VVIDE H YKG FG H AL++RRL R+C+ +
Sbjct: 407 HFL-------------------LHLRYVVIDELHIYKGLFGSHVALVMRRLRRMCAFLGN 447
Query: 435 SDPSFVFSTATSANPREHCMELANLSTLEL--IQNDGSPCAQKLFVLWNPTSCLRSVLNK 492
D F+ +AT +P H + + ++ I DGSP QK V+WNP + L+
Sbjct: 448 FDVQFISCSATLMDPVGHMHNIFGVDEKDITHIHEDGSPTGQKHLVVWNPPYINPNDLSS 507
Query: 493 SQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEE- 551
+ + I E + + ++V + +R IAFC R++CEL++ R +E
Sbjct: 508 GRENF-------------IKESANILVQLVLNNVRAIAFCYVRRVCELLMKEVRNKFQEL 554
Query: 552 TAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFP 611
P LV + YR GY A DRR+IE++ F G L + +TNALELGID+G +D L GFP
Sbjct: 555 NKPELVSQVMSYRGGYSASDRRQIEQEMFHGNLSAIISTNALELGIDIGGLDAVLMCGFP 614
Query: 612 GSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVL 671
S+++ QQ+GR+GRR + SL + V + P+DQ++MK+PE L + + +D +N VL
Sbjct: 615 LSLSNFHQQSGRAGRRNKDSLTLVVGSDAPVDQHYMKHPELLLEWNFQELILDFENALVL 674
Query: 672 EQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKN--RGYLSSDPSLDSSAKIFEYIGHE 729
E HL CAA E P++ ++KY+ L ++ L++ GY + L
Sbjct: 675 EGHLQCAAFELPIT--DEDKYYFPNLEKVLSKLESDENGYHCATRYL------------- 719
Query: 730 KMPSHTISIRAIESERYEVIDMQSNE--VLEEIEESKAFFQVYEGAVYMHQGHTYLVKEL 787
PS +SIR IE ++Y V+D+ +N V+EEIE S+ F +YEG +++HQG+ YLV+E
Sbjct: 720 PWPSKNVSIRGIEEDQYAVVDITNNRNIVIEEIEASRTSFTLYEGGIFIHQGYPYLVREF 779
Query: 788 NLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTW 847
N A ++ D+ + T RD+TD V + + + L V
Sbjct: 780 NADEHFAKVERVDVDWTTSQRDFTD--VDPKEIELVRSVDGSDVPIYFGKILTTIVV--- 834
Query: 848 FGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQS-VKAVVEQNFSFRSGLHAASHA 906
FGF+++ + I+ D +E++ P S+ WI +P + + + + + G+HAA HA
Sbjct: 835 FGFFKVDKNKRIL-DAIEVHNPPILIHSKGFWIDIPATALDLITYKGLNAAGGIHAAQHA 893
Query: 907 LLHVVPIYVRCNFSDLAPECPNPHDS-------RYFPERILLYDRHPG--GTGVS 952
++ ++P+ + ++ EC P R P R++ +D G G+G+S
Sbjct: 894 IMGLLPLIIVSGVDEIHTECKAPEKEFAQRETKRKRPARLIFHDSKGGKHGSGLS 948
>gi|343429096|emb|CBQ72670.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 1508
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 270/726 (37%), Positives = 413/726 (56%), Gaps = 73/726 (10%)
Query: 246 SALKST-GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSAL 304
+AL +T GI YSHQAE++ A KNV+V+T TSSGKSL Y LPVL A+ D ++A+
Sbjct: 670 NALYATHGIEHFYSHQAEALNALHESKNVIVSTSTSSGKSLIYQLPVLGAIEQDGDATAM 729
Query: 305 YMFPTKALAQDQLRAL---LAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDM 361
++FPTKALAQDQ R+L +A + + +I + YDGDT + R +R+ A ++ TNPDM
Sbjct: 730 FIFPTKALAQDQRRSLQDLIANCEGVEGAI-VATYDGDTDKDLRKDIRERASVIFTNPDM 788
Query: 362 LHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALI 421
LH SILP + R L NLR +VV+DE H Y G FG H + I
Sbjct: 789 LHQSILPSEDLWRRFLRNLR-------------------YVVVDELHIYNGLFGAHVSFI 829
Query: 422 LRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWN 481
+RRL R+CS + FV +AT ANP++H L + + ++ DGSP +K +++WN
Sbjct: 830 MRRLRRICSALGNRTVQFVSCSATVANPKQHMQTLFGVQDVHVVTEDGSPAGRKEWLIWN 889
Query: 482 PTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELV 541
P +D++ A + SS +EVS +F ++Q G+R I F + R+ CE+V
Sbjct: 890 PPY------------IDESDPAQGRVSS-YAEVSKVFRHLIQRGVRTIIFTKVRRTCEIV 936
Query: 542 LSYTR-EILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVG 600
+ R ++L E P + + + YR+GY +DRR+IE+D F G+L G+ AT+ALELGID+G
Sbjct: 937 MRQVRNDLLLEDRPDVANKVMSYRSGYSPQDRRKIEQDMFKGQLLGIVATSALELGIDIG 996
Query: 601 HIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIEC 660
+D + LGFP SI+SL QQAGR+GRR++ SL+V + P++Q++M +P+++F P
Sbjct: 997 SLDAVIMLGFPYSISSLRQQAGRAGRRQKDSLSVLIGDPWPMNQHYMHFPDEIFLQPDAA 1056
Query: 661 CHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSA 720
+D N +LE HL CAA E P++L DE+YFG L++ T L++
Sbjct: 1057 LSVDLGNDFILESHLQCAAEEMPITLEDDEQYFGPHLATLCQT-----------RLETDG 1105
Query: 721 KIFEYIGHE--KMPSHTISIRAIESERYEVIDMQSN-----EVLEEIEESKAFFQVYEGA 773
F Y E P+ ++IR + Y ID V+EE+E +A F+ +EGA
Sbjct: 1106 SGFFYCREELRPNPARDVAIRGARQDSYCYIDDTPGRGGGARVMEEVEIERAIFEAFEGA 1165
Query: 774 VYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYAT-KISKDQLT 832
V+MHQG +Y+ +E+N ++IA +AD+ Y T+ RD+T+ +A T +I + + +
Sbjct: 1166 VFMHQGLSYICREINHETRIARMVQADVNYHTRPRDHTN------TDAMETYRIRRLRES 1219
Query: 833 KTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQS-VKAVVE 891
A T+ + +G++++ R + I+ D VE+ P + ++ +WI VP V A+ E
Sbjct: 1220 PYLAYYGKVTIASYVWGYFKVDRRANIL-DAVEVDCPPFIRHTRGLWIDVPTWLVDAMTE 1278
Query: 892 QNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPEC-------PNPHDSRYFPERILLYDR 944
+ + + +HAA HALL + P++V D+ EC SR P R++ YD
Sbjct: 1279 KRINAAAAIHAAEHALLSLTPMFVVSVAGDVRTECKIAEKEYAAKPSSRKRPARLVFYD- 1337
Query: 945 HPGGTG 950
PG G
Sbjct: 1338 MPGQNG 1343
>gi|317157015|ref|XP_001826165.2| ATP-dependent helicase hrq1 [Aspergillus oryzae RIB40]
Length = 1066
Score = 451 bits (1160), Expect = e-123, Method: Compositional matrix adjust.
Identities = 267/714 (37%), Positives = 390/714 (54%), Gaps = 82/714 (11%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKST-GISKLYSHQAESIMASLAGKNVVVATMTSSGKS 284
I A+ A+ E+ L N +AL +T GI++ YSHQAE+I G NV+V+T TSSGKS
Sbjct: 348 IDAQPAIHGELAFKLSQNLVNALYNTRGITQFYSHQAEAINHLYEGHNVIVSTSTSSGKS 407
Query: 285 LCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRA---LLAMTKAFDASIDIGVYDGDTT 341
L Y +P+L L +D S LY+FPTKALAQDQ R+ LL + ++ + +DGDT
Sbjct: 408 LIYQVPMLHELENDHDSRGLYIFPTKALAQDQRRSMKDLLQYMEGLQHTM-VETFDGDTP 466
Query: 342 QKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRF 401
++R +RD AR++ TNPDMLH+++LP + L NL+ F
Sbjct: 467 MENRNIIRDEARIIFTNPDMLHITVLPQESAWRTFLKNLK-------------------F 507
Query: 402 VVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLST 461
VV+DE H Y G FG H A ++RRL R+C+ V F+ +AT ANP +H + +
Sbjct: 508 VVVDELHVYNGLFGSHVAFVMRRLRRICAAVGNRHVRFISCSATVANPEDHMKAIFGVED 567
Query: 462 LELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEM 521
++LI DGSP +K F+ WN T D + + ++E + LF ++
Sbjct: 568 VKLIDFDGSPSGRKEFICWN-------------TPFKDPGDPTSGRGDSVAETARLFCQL 614
Query: 522 VQHGLRCIAFCRSRKLCELVLSYTR-EILEETAPHLVDSICVYRAGYVAEDRRRIERDFF 580
+ G R IAFCR RKLCE++L R E P + + + YR GY +DRR+IE++ F
Sbjct: 615 ILRGARVIAFCRIRKLCEVLLQAVRAEFQNLDRPEIGNLVMGYRGGYSPQDRRKIEKEMF 674
Query: 581 GGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEG 640
GKL G+ ATNALELG+D+G +D + LGFP SI++L QQ+GR+GRR + SL+V V
Sbjct: 675 EGKLMGIVATNALELGVDIGSLDAVITLGFPYSISNLRQQSGRAGRRNKDSLSVLVGDRY 734
Query: 641 PLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSG 700
P DQY+MK PE+LF P +D N +LE H+ CAA E P+ D YFG
Sbjct: 735 PTDQYYMKNPEELFTKPNCELQVDLANELILEGHIQCAAFEMPIRPNEDSIYFGF----- 789
Query: 701 ITTLKNRGYLSSDPSLDSSAKIFEYIGHEKM---PSHTISIRAIESERYEVIDMQS--NE 755
Y HE+ PS +SIR E + + VID + N
Sbjct: 790 ------------------------YHCHERFRPQPSRCVSIRDTEDQHFAVIDTTNARNI 825
Query: 756 VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHV 815
VLEE+E S+AFF +YEG +++HQG TYLVKELN S+ A + + + T RDYTDI
Sbjct: 826 VLEEVEASRAFFTIYEGGIFLHQGQTYLVKELNPDSRFARVVRVHVDWNTMQRDYTDI-- 883
Query: 816 SGGNNAYATKISKDQLTKTTAQAL--ACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSY 873
+ T + TT++A A + +GF+++ + G + D V + P
Sbjct: 884 ----DPIETDTIRQISPTTTSRAFYGAVRIHAVVYGFFKIDK-RGRVLDAVAVDNPPIDI 938
Query: 874 ESQAVWIQVPQSVKAVVE-QNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPEC 926
++ +W+ VP+ ++E ++ + + +HAA HA+L ++P +V + D+ EC
Sbjct: 939 LTKGMWLDVPKRALEILESRHLNIAAAIHAAEHAVLSLLPTFVISSPGDVRTEC 992
>gi|71001468|ref|XP_755415.1| DEAD/DEAH box helicase [Aspergillus fumigatus Af293]
gi|66853053|gb|EAL93377.1| DEAD/DEAH box helicase, putative [Aspergillus fumigatus Af293]
Length = 1206
Score = 450 bits (1158), Expect = e-123, Method: Compositional matrix adjust.
Identities = 266/711 (37%), Positives = 394/711 (55%), Gaps = 63/711 (8%)
Query: 228 ARKAVLVEIPDALLDNTKSALKST-GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLC 286
A+ AV ++ L + +AL +T GI++ Y HQAE+I + AG++V+V+T TSSGKSL
Sbjct: 386 AQSAVYGDLTFQLSQDLVNALYNTKGITQFYLHQAEAINSLYAGEDVIVSTSTSSGKSLI 445
Query: 287 YNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGV--YDGDTTQKD 344
Y +P+L L D +S +Y+FPTKALAQDQ R++ + + D D+ V +DGDT
Sbjct: 446 YQVPMLHELGRDPNSRGMYIFPTKALAQDQKRSIKELLQFMDGLQDVMVETFDGDTPMGS 505
Query: 345 RMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVI 404
R +RD AR++ TNPDMLH++ILP + IL NL+ FVV+
Sbjct: 506 RNLIRDEARIIFTNPDMLHITILPQESSWRTILKNLK-------------------FVVV 546
Query: 405 DEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLEL 464
DE H Y G FG H A I+RRL R+C+ V F+ +AT ANP EH + + ++ L
Sbjct: 547 DELHVYNGLFGSHVAFIMRRLRRICAAVGNRHVRFISCSATVANPEEHMKAVFGIDSVRL 606
Query: 465 IQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQH 524
I DGSP +K F+ WN T D + + ++E + LF +++
Sbjct: 607 IDFDGSPSGRKEFLCWN-------------TPYKDPNDPTSGRGDSVAETARLFCQLILR 653
Query: 525 GLRCIAFCRSRKLCELVLSYTREILEETA-PHLVDSICVYRAGYVAEDRRRIERDFFGGK 583
G R IAFCR RK+CE++L R + P + + YR GY +DRR+IER+ F G
Sbjct: 654 GARVIAFCRIRKMCEVLLQAVRNEFQAIGRPEVGKLVMGYRGGYSPQDRRKIEREMFEGH 713
Query: 584 LCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLD 643
L G+ ATNALELG+D+G +D + LGFP SI++L QQ+GR+GRR + SL+V V P D
Sbjct: 714 LLGIVATNALELGVDIGSLDAVITLGFPYSISNLRQQSGRAGRRNKDSLSVLVGDRFPAD 773
Query: 644 QYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITT 703
QY+M+ P++LF P ID N +LE H+ CAA E P+ D YFG L I
Sbjct: 774 QYYMQNPDELFTKPHCELQIDLSNELILEGHVQCAAFEMPIRPDEDHVYFGKQLHE-IAA 832
Query: 704 LKNRGYLSSDPSLDSSAKIFEYIGHEKM---PSHTISIRAIESERYEVIDMQS--NEVLE 758
++ L D Y HE+ PS + IR E + + VID + N VLE
Sbjct: 833 MR----LVRD-------SFGFYHCHERFRPHPSRCVPIRDTEDQHFAVIDATNARNVVLE 881
Query: 759 EIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGG 818
E+E S+AFF +YEG +++HQG TYLVKELN + A K + + T RDYTDI
Sbjct: 882 EVEASRAFFTIYEGGIFLHQGQTYLVKELNTDQRFARVVKVHVDWSTMQRDYTDI----- 936
Query: 819 NNAYATKISKDQLTKTTAQALACTVT--TTWFGFYRLWRGSGIIFDTVELYLPKYSYESQ 876
+ T++ + + ++A +V +GF+++ + G + D V + P + ++
Sbjct: 937 -DPIETEVMRQINQSSASRAFYGSVQIHAVVYGFFKIDK-RGRVLDAVAVDNPPINISTK 994
Query: 877 AVWIQVPQSVKAVVE-QNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPEC 926
+W+ VP+ ++E + + + +HAA HA+L ++P +V + D+ EC
Sbjct: 995 GMWLDVPKRALEILESRRLNIAAAIHAAEHAVLSLLPTFVISSPGDVKTEC 1045
>gi|85107552|ref|XP_962399.1| hypothetical protein NCU06365 [Neurospora crassa OR74A]
gi|28924004|gb|EAA33163.1| hypothetical protein NCU06365 [Neurospora crassa OR74A]
Length = 1175
Score = 450 bits (1158), Expect = e-123, Method: Compositional matrix adjust.
Identities = 261/722 (36%), Positives = 403/722 (55%), Gaps = 70/722 (9%)
Query: 250 STGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPT 309
+ GI++ Y+HQA++I A G++VVV+T TSSGKSL Y LPV+ AL D ++ A+Y+FPT
Sbjct: 383 TKGITQFYAHQADAINALHDGRHVVVSTSTSSGKSLIYQLPVIHALEQDRNTRAMYIFPT 442
Query: 310 KALAQDQLRAL---LAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSI 366
KALAQDQ R+L +++ + I + +DGDT DR +RD+AR++ TNPDMLH++I
Sbjct: 443 KALAQDQKRSLKEVMSLMPGLEEMI-VETFDGDTPMHDRNIIRDDARIIFTNPDMLHITI 501
Query: 367 LPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLC 426
LP ++ L NL+ +VV+DE H Y G G H A I+RRL
Sbjct: 502 LPQEERWRSFLQNLK-------------------YVVVDELHYYNGLMGSHVAFIMRRLR 542
Query: 427 RLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCL 486
R+ + + + F+ +AT ANP+EH + + ++LI +GSP +K F+ WN
Sbjct: 543 RILAALGNTHVLFISCSATVANPKEHFTTIFGVEDVKLIDFNGSPSGRKEFLCWN----- 597
Query: 487 RSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTR 546
T D + ++ + E S LF E++ G+R IAFCR R+ CE +++ +
Sbjct: 598 --------TPYKDPGDPSSGRGNAKLECSRLFCELILRGVRVIAFCRVREHCEKLVNAIK 649
Query: 547 EILEETA-PHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVT 605
+ LE + + YR GY A+DRRRIE + F GKL G+ AT ALE+GID+G++D
Sbjct: 650 QELEHRGRSECMSRVMGYRGGYTAQDRRRIETEMFEGKLMGIVATTALEIGIDIGNLDCV 709
Query: 606 LHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDA 665
+ GFP +IA+L QQ+GR+GRR R SL++ + DQY+M+ P++LF P ID
Sbjct: 710 ITWGFPYTIANLRQQSGRAGRRNRDSLSILLGDSFATDQYYMQNPDELFTKPNCELSIDM 769
Query: 666 QNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEY 725
N V E H+ CAA E P+ D KYFG L+ T+ L D Y
Sbjct: 770 DNMLVKEGHIQCAAHEMPILPAKDSKYFGDDLA----TVCEERLLKGDRGF--------Y 817
Query: 726 IGHEKM---PSHTISIRAIESERYEVIDMQSNE--VLEEIEESKAFFQVYEGAVYMHQGH 780
H+K PS +SIR IE + + ++D+ +N VLEE+E S+A F +Y+GA+++HQG+
Sbjct: 818 HCHDKFRPRPSQFVSIRDIEEDHFAIVDVTNNRNVVLEELEASRATFTIYDGAIFLHQGN 877
Query: 781 TYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALA 840
TYLV++ N +K+A +K + + T+ RDYTDI + I + + +K+ A
Sbjct: 878 TYLVRDFNPDNKMARVEKVKVDWTTQQRDYTDI-----DPVETEAIRRIKGSKSLAYHGV 932
Query: 841 CTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVV-EQNFSFRSG 899
+T FG++++ + + I+ D +++ P S+ W+ VP+S A++ +
Sbjct: 933 IRITQVVFGYFKVDKKNRIL-DAIQVDNPPVIRYSKGTWLDVPKSSLAILTSRRLHVGGA 991
Query: 900 LHAASHALLHVVPIYVRCNFSDLAPECPN-------PHDSRYFPERILLYDRH--PGGTG 950
+HAA HA++ ++P +V D+ EC N R P R+ YD GG+G
Sbjct: 992 IHAAQHAIMSLMPNFVMSMPGDVRTECKNHLKEFAKRETQRKRPARLTFYDAKGGAGGSG 1051
Query: 951 VS 952
++
Sbjct: 1052 IN 1053
>gi|388854085|emb|CCF52235.1| uncharacterized protein [Ustilago hordei]
Length = 1513
Score = 450 bits (1157), Expect = e-123, Method: Compositional matrix adjust.
Identities = 267/726 (36%), Positives = 415/726 (57%), Gaps = 73/726 (10%)
Query: 246 SALKST-GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSAL 304
+AL +T GI + Y+HQAE++ A KNV+V+T TSSGKSL Y LPVL A+ D S+A+
Sbjct: 674 NALYATHGIEQFYAHQAEALNALHERKNVIVSTSTSSGKSLIYQLPVLGAIEEDGDSTAM 733
Query: 305 YMFPTKALAQDQ---LRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDM 361
++FPTKALAQDQ L+ L++ + + +I + YDGDT + R +R+ A ++ TNPDM
Sbjct: 734 FIFPTKALAQDQRRSLQGLISNCEGVEGAI-VATYDGDTDKDLRKDIRERANVIFTNPDM 792
Query: 362 LHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALI 421
LH SILP + R L NL+ +VV+DE H Y G FG H + I
Sbjct: 793 LHQSILPSEDLWRRFLRNLK-------------------YVVVDELHIYNGLFGAHVSFI 833
Query: 422 LRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWN 481
+RRL R+CS + FV +AT ANP++H L + + ++ DGSP +K +++WN
Sbjct: 834 MRRLRRICSALGNRSVQFVSCSATVANPKQHMQTLFGVEEVHVVTEDGSPAGRKEWLIWN 893
Query: 482 PTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELV 541
P +D++ A + SS +EVS +F ++Q G+R I F + R+ CE+V
Sbjct: 894 PPY------------IDESDPAQGRVSS-YAEVSKVFRHLIQRGVRTIIFTKVRRTCEIV 940
Query: 542 LSYTR-EILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVG 600
+ R ++L E P + + + YR+GY +DRR+IE+D F G+L G+ AT+ALELGID+G
Sbjct: 941 MRQVRNDLLLEDRPDVANKVMSYRSGYSPQDRRKIEQDMFKGQLLGIVATSALELGIDIG 1000
Query: 601 HIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIEC 660
+D + LGFP SI+SL QQAGR+GRR++ SL+V + P+DQ++M +P+++F P
Sbjct: 1001 SLDAVIMLGFPYSISSLRQQAGRAGRRQKDSLSVLIGDPWPMDQHYMHFPDEIFLQPDAA 1060
Query: 661 CHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSA 720
+D N +LE HL CAA E P+++ DE+YFG L+ T K R L++
Sbjct: 1061 LSVDLGNDFILESHLQCAAEEMPITIEDDEQYFGPHLA---TLCKTR--------LETDG 1109
Query: 721 KIFEYIGHE--KMPSHTISIRAIESERYEVIDMQSN-----EVLEEIEESKAFFQVYEGA 773
F Y E P+ ++IR + Y ID +V+EE+E +A F+ +EGA
Sbjct: 1110 TGFFYCREELRPNPARDVAIRGTRQDSYCYIDDTPGRPGGAKVMEEVEMERAIFEAFEGA 1169
Query: 774 VYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYAT-KISKDQLT 832
V+MHQG +Y+ +++N ++IA +AD+ Y T+ RD+T+ +A T +I + + +
Sbjct: 1170 VFMHQGLSYICQDINHETRIARMVQADVNYHTRPRDHTN------TDAMETYRIRRLRES 1223
Query: 833 KTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQS-VKAVVE 891
A T+ + +G++++ R + I+ D VE+ P + ++ +WI VP + + E
Sbjct: 1224 PYLAYYGKVTIASYVWGYFKVDRQANIL-DAVEVDCPPFIRHTKGLWIDVPTWLIDTMTE 1282
Query: 892 QNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPEC-------PNPHDSRYFPERILLYDR 944
+ + + +HAA HALL + P++V D+ EC SR P R++ YD
Sbjct: 1283 KRINAAAAIHAAEHALLSLTPMFVVSVAGDVRTECKIAEKEYAAKPSSRKRPARLIFYD- 1341
Query: 945 HPGGTG 950
PG G
Sbjct: 1342 MPGQNG 1347
>gi|336471028|gb|EGO59189.1| hypothetical protein NEUTE1DRAFT_145256 [Neurospora tetrasperma FGSC
2508]
gi|350292105|gb|EGZ73300.1| P-loop containing nucleoside triphosphate hydrolase protein
[Neurospora tetrasperma FGSC 2509]
Length = 1174
Score = 450 bits (1157), Expect = e-123, Method: Compositional matrix adjust.
Identities = 263/722 (36%), Positives = 405/722 (56%), Gaps = 70/722 (9%)
Query: 250 STGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPT 309
+ GI++ Y+HQA++I A G++VVV+T TSSGKSL Y LPV+ AL D ++ A+Y+FPT
Sbjct: 382 TKGITQFYAHQADAINALHDGRHVVVSTSTSSGKSLIYQLPVIHALEQDRNTRAMYIFPT 441
Query: 310 KALAQDQLRAL---LAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSI 366
KALAQDQ R+L ++ + I + +DGDT DR +RD+AR++ TNPDMLH++I
Sbjct: 442 KALAQDQKRSLKEVMSFMPGLEEMI-VETFDGDTPMHDRNIIRDDARIIFTNPDMLHITI 500
Query: 367 LPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLC 426
LP ++ L NL+ +VV+DE H Y G G H A I+RRL
Sbjct: 501 LPQEERWRSFLQNLK-------------------YVVVDELHYYNGLMGSHVAFIMRRLR 541
Query: 427 RLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCL 486
R+ + + + F+ +AT ANP+EH + + ++LI +GSP +K F+ WN
Sbjct: 542 RILAALGNTHVLFISCSATVANPKEHFTTIFGVEDVKLIDFNGSPSGRKEFLCWN----- 596
Query: 487 RSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTR 546
T D + ++ + E S LF E++ G+R IAFCR R+ CE +++ +
Sbjct: 597 --------TPYKDPGDPSSGRGNAKFECSRLFCELILRGVRVIAFCRVREHCEKLVNAIK 648
Query: 547 EILEETA-PHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVT 605
+ LE + + YR GY A+DRRRIE + F GKL G+ AT ALE+GID+G++D
Sbjct: 649 QELEHRGRSECMSRVMGYRGGYTAQDRRRIETEMFEGKLMGIVATTALEIGIDIGNLDCV 708
Query: 606 LHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDA 665
+ GFP +IA+L QQ+GR+GRR R SL+V + DQY+M+ P++LF P ID
Sbjct: 709 ITWGFPYTIANLRQQSGRAGRRNRDSLSVLIGDSFATDQYYMQNPDELFTKPNCELSIDM 768
Query: 666 QNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEY 725
+N V E H+ CAA E P+ D KYFG L+ T + R L + F Y
Sbjct: 769 ENMLVKEGHIQCAAHEMPILPAKDSKYFGDDLA---TVCEER--------LLKGERGF-Y 816
Query: 726 IGHEKM---PSHTISIRAIESERYEVIDMQSNE--VLEEIEESKAFFQVYEGAVYMHQGH 780
H+K PS +SIR IE + + ++D+ +N VLEE+E S+A F +Y+GA+++HQG+
Sbjct: 817 HCHDKFRPRPSQFVSIRDIEEDHFAIVDVTNNRNVVLEELEASRATFTIYDGAIFLHQGN 876
Query: 781 TYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALA 840
TYLV++ N +K+A +K + + T+ RDYTDI + I + + +K+ A
Sbjct: 877 TYLVRDFNPDNKMARVEKVKVDWTTQQRDYTDI-----DPVETEAIRRIKGSKSLAYHGV 931
Query: 841 CTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVV-EQNFSFRSG 899
+T FG++++ R + ++ D +++ P S+ W+ VP+S A++ +
Sbjct: 932 IRITQVVFGYFKVDRMNRVL-DAIQVDNPPVIRYSKGTWLDVPKSSLAILTSRRLHVGGA 990
Query: 900 LHAASHALLHVVPIYVRCNFSDLAPECPN-------PHDSRYFPERILLYDRH--PGGTG 950
+HAA HA++ ++P +V D+ EC N R P R+ YD GG+G
Sbjct: 991 IHAAQHAIMSLMPNFVMSMPGDVRTECKNHLKEFARRETQRKRPARLTFYDAKGGAGGSG 1050
Query: 951 VS 952
++
Sbjct: 1051 IN 1052
>gi|367022808|ref|XP_003660689.1| hypothetical protein MYCTH_89534 [Myceliophthora thermophila ATCC
42464]
gi|347007956|gb|AEO55444.1| hypothetical protein MYCTH_89534 [Myceliophthora thermophila ATCC
42464]
Length = 968
Score = 450 bits (1157), Expect = e-123, Method: Compositional matrix adjust.
Identities = 271/771 (35%), Positives = 414/771 (53%), Gaps = 70/771 (9%)
Query: 205 EMVEHLRKGIGSQGQMVHVED--ISARKAVLVEIPDALLDNTKSAL-KSTGISKLYSHQA 261
E+V+ L+ GQ+V A++AV E+ L + +AL + GI++ Y+HQA
Sbjct: 139 EIVQELKDSPWYTGQIVPDGHRVFEAQEAVYGELNFLLSQDLVNALYNAKGITQFYAHQA 198
Query: 262 ESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALL 321
E+I A G NVVVAT TSSGKSL Y LPVL AL D + A+Y+FPTKALAQDQ R+LL
Sbjct: 199 EAINALHDGHNVVVATPTSSGKSLIYQLPVLHALERDRDTRAMYIFPTKALAQDQRRSLL 258
Query: 322 AMTKAFDA--SIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSN 379
M + + +DGDT +R +RD AR++ TNPDMLH++ILP ++ L N
Sbjct: 259 EMMSFMPGLEEVLVETFDGDTPMSERNTIRDEARIIFTNPDMLHITILPNEEKWRTFLKN 318
Query: 380 LRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSF 439
L+ +VV+DE H Y G G H A ++RRL R C+ + F
Sbjct: 319 LK-------------------YVVVDELHYYNGLMGSHVAFVMRRLRRTCAALGNRRVKF 359
Query: 440 VFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDD 499
+ +AT ANP +H + + + LI DGSP +K F+ WN T D
Sbjct: 360 ISCSATVANPEQHFKTIFGIDDVRLIDFDGSPSGRKEFICWN-------------TPYKD 406
Query: 500 TRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCE-LVLSYTREILEETAPHLVD 558
+ A+ + + E S LF +++ G+R IAFCR R+ CE LV + +E+ +V
Sbjct: 407 PGDPASGRGNAMLECSRLFCQLILRGVRVIAFCRVREQCEKLVGAVKQELAALGRSEVVA 466
Query: 559 SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLW 618
+ YR GY A+DRR+IE + F GKL G+ AT ALELG+D+G +D + GFP +IA+L
Sbjct: 467 RVMGYRGGYTAQDRRQIESEMFEGKLLGIVATTALELGVDIGTLDCVITWGFPYTIANLR 526
Query: 619 QQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCA 678
QQ+GR+GRR + SL++ V DQY+M+ P++LF P +D N V E H+ CA
Sbjct: 527 QQSGRAGRRNKDSLSILVGDGCATDQYYMQNPDELFTKPHCELQVDLDNMLVKEGHVQCA 586
Query: 679 ALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFE-YIGHEKMPSHTIS 737
A E P+ D YFGS L L ++ + A + + +PS +S
Sbjct: 587 AYEMPIKPAEDAVYFGSDLPR----------LCAERLIQDEAGFYHCHPRFRPLPSRFVS 636
Query: 738 IRAIESERYEVIDMQSNE--VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIAL 795
IR E + + ++D+ +N VLEE+E S+A F +Y+GA+++HQG TYLV++ N ++A
Sbjct: 637 IRDTEEDHFAIVDITNNRNVVLEELEASRATFTIYDGAIFLHQGDTYLVRDFNPDKQLAR 696
Query: 796 CQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACT--VTTTWFGFYRL 853
++ + + T RDYTD+ + T+ K ++T + +A T + FG++++
Sbjct: 697 VERVKVDWLTSQRDYTDV------DPVETEAVK-RITNSRWRAYYGTIRIKQVVFGYFKV 749
Query: 854 WRGSGIIFDTVELYLPKYSYESQAVWIQVPQ-SVKAVVEQNFSFRSGLHAASHALLHVVP 912
I D V++ P S+ +W+ VP+ ++ +V + + +HAA HA++ +VP
Sbjct: 750 DARRNRILDAVQVDNPPVIRHSKGMWLDVPKRALDILVARRLNVAGAIHAAQHAVMSLVP 809
Query: 913 IYVRCNFSDLAPECPNP-------HDSRYFPERILLYDRH--PGGTGVSKQ 954
+V D+ EC + R P R+ YD GG+G++ +
Sbjct: 810 TFVISMPGDVGTECKSGLKEFAKRETQRKRPARLTFYDAKGGAGGSGINTK 860
>gi|115384626|ref|XP_001208860.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114196552|gb|EAU38252.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 1697
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 268/709 (37%), Positives = 390/709 (55%), Gaps = 61/709 (8%)
Query: 228 ARKAVLVEIPDALLDNTKSALKST-GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLC 286
A+ AV E+ L N +AL +T GI++ YSHQAE+I G NV+V+T TSSGKSL
Sbjct: 877 AQPAVYGELTFQLSQNMVNALYNTKGITQFYSHQAEAINHLYEGHNVIVSTSTSSGKSLI 936
Query: 287 YNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDA--SIDIGVYDGDTTQKD 344
Y +P+L L HD +S LY+FPTKALAQDQ R++ + + D + +DGDT +
Sbjct: 937 YQVPMLHELEHDHASRGLYIFPTKALAQDQRRSMTELLQFMDGLEHTMVETFDGDTPMEY 996
Query: 345 RMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVI 404
R +RD AR++ TNPDMLH++ILP + L NL+ FVV+
Sbjct: 997 RNGIRDEARIIFTNPDMLHITILPQENAWRTFLQNLK-------------------FVVV 1037
Query: 405 DEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLEL 464
DE H Y G FG H A I+RRL R+C+ V F+ +AT ANP EH + L ++L
Sbjct: 1038 DELHVYNGLFGSHVAFIMRRLRRICAAVGNRHVRFISCSATVANPEEHMKAIFGLDDVKL 1097
Query: 465 IQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQH 524
I DGSP +K F+ WN T D ++ + ++E + LF +++
Sbjct: 1098 IDFDGSPSGRKEFICWN-------------TPFKDPKDPTSGRGDSVAETARLFCQLILR 1144
Query: 525 GLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICV-YRAGYVAEDRRRIERDFFGGK 583
G R IAFCR RKLCE++L R + V + + YR GY +DRRRIE++ F G+
Sbjct: 1145 GARVIAFCRIRKLCEVLLQAVRNEFQALDRAEVGKMVMGYRGGYSPQDRRRIEQEMFEGR 1204
Query: 584 LCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLD 643
L G+ ATNALELG+D+G +D + +GFP SI++L QQ+GR+GRR + SL+V V P D
Sbjct: 1205 LMGIVATNALELGVDIGSLDAVVTMGFPYSISNLRQQSGRAGRRNKDSLSVLVGDRYPTD 1264
Query: 644 QYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITT 703
QY+MK PE+LF P +D N VLE H+ CAA E P+ D +YFG+ L T
Sbjct: 1265 QYYMKNPEELFTRPNCELQVDLANELVLEGHIQCAAFEMPIRPDADGEYFGAQLGEFAAT 1324
Query: 704 LKNRGYLSSDPSLDSSAKIFEYIGHEKM---PSHTISIRAIESERYEVIDMQ--SNEVLE 758
R L Y HE+ P+ ++IR E + + V+D N VLE
Sbjct: 1325 RLVRDALGY------------YHCHERFRPQPARCVAIRDTEDQHFAVVDTTHGRNAVLE 1372
Query: 759 EIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGG 818
E+E S+AFF +YEG +++HQG TYLV+EL+ ++A + + + T RDYTDI
Sbjct: 1373 EVEASRAFFTIYEGGIFLHQGQTYLVQELSPERRVARVVRVHVDWNTMQRDYTDI----- 1427
Query: 819 NNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAV 878
+ T+ + T A A + +GF+++ + G + D V + P S+ +
Sbjct: 1428 -DPVETETMRAITPATRAFYGAIRIHAVVYGFFKIDK-RGRVLDAVAVDNPPIDILSKGM 1485
Query: 879 WIQVPQS-VKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPEC 926
W+ VP+S + + + + + +HAA HA+L ++P +V + D+ EC
Sbjct: 1486 WLDVPKSALDILASRRLNIAAAIHAAEHAVLSLLPTFVISSPGDVRTEC 1534
>gi|317027489|ref|XP_001399408.2| ATP-dependent helicase hrq1 [Aspergillus niger CBS 513.88]
Length = 1193
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 279/758 (36%), Positives = 409/758 (53%), Gaps = 80/758 (10%)
Query: 205 EMVEHLRKGIGSQGQMVHVED--ISARKAVLVEIPDALLDNTKSALKST-GISKLYSHQA 261
E+VE +R+ Q+V + A+ E+ L N +AL +T I++ YSHQA
Sbjct: 312 EIVEEIRQMDWYTAQIVPEGHRVFDPQPAMYGELTFPLSQNLVNALYNTKNITQFYSHQA 371
Query: 262 ESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALL 321
E+I AG +V+V+T TSSGKSL Y +P+L L D SS LY+FPTKALAQDQ R++
Sbjct: 372 EAINHLQAGHHVIVSTSTSSGKSLIYQVPMLHELEKDPSSRGLYIFPTKALAQDQRRSMQ 431
Query: 322 AMTKAFDA--SIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSN 379
+ + D + +DGDT R +RD AR++ TNPDMLH++ILP + L N
Sbjct: 432 ELLQFMDGLQGTLVETFDGDTPMPSRNLIRDEARIIFTNPDMLHITILPQEAAWRTFLQN 491
Query: 380 LRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSF 439
L+ FVV+DE H Y G FG H A I+RRL R+C+ V F
Sbjct: 492 LK-------------------FVVVDELHVYNGLFGTHVAFIMRRLRRICAAVGNHTVQF 532
Query: 440 VFSTATSANPREHCMEL--ANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDM 497
+ +AT ANP +H + + +++ LI +DGSP +K F+ WN T
Sbjct: 533 ISCSATVANPSQHMHAIFGVDPNSIHLIDSDGSPSGRKEFLCWN-------------TPY 579
Query: 498 DDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTR-EILEETAPHL 556
D + ++ + ++E + LF++++ G R IAFCR RKLCE++L R E+ P +
Sbjct: 580 KDPNDPSSGRADSVTETARLFSQLILRGARVIAFCRIRKLCEVLLQAVRTELTSLERPEI 639
Query: 557 VDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIAS 616
+ + YR GY +DRR IE+D F G+L G+ ATNALELG+D+G +D + LGFP SI++
Sbjct: 640 ANMVMGYRGGYSPQDRRNIEKDMFEGRLLGIVATNALELGVDIGSLDAVITLGFPYSISN 699
Query: 617 LWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLV 676
L QQ+GR+GRR + SL++ V DQ++M+ P++LF P ID N +LE HL
Sbjct: 700 LRQQSGRAGRRNKDSLSILVGDRYATDQHYMRNPDELFTKPNTELQIDLSNDLILEAHLQ 759
Query: 677 CAALEHPLSLIYDEKYFGSGLSSGITT-LKNRGYLSSDPSLDSSAKIFEYIGHEKM---P 732
CAA E PLSL DE YFG L S + T L Y+ PSL Y H + P
Sbjct: 760 CAAYEKPLSLALDETYFGPQLPSLLETRLLQDKYI---PSL--------YHTHPRFLPSP 808
Query: 733 SHTISIRAIESERYEVIDMQS--NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLS 790
S +I+IR E + + VID + N VLEE+E S+AFF +YEG +++HQG TYLV ELN +
Sbjct: 809 SRSIAIRDTEDQHFAVIDTTNARNAVLEEVEASRAFFTIYEGGIFLHQGQTYLVHELNTT 868
Query: 791 SKIALCQKADLKYFTKTRDYTDIHVSGGNN--------------------AYATKISKDQ 830
A + + Y T+ RDYTDI N T +
Sbjct: 869 MYFARVSRVHVDYTTQQRDYTDIDPIETENIRLLSSSSTPTSTSSSDSTSTSQTNTKSNH 928
Query: 831 LTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVEL-YLPKYSYESQAVWIQVPQ-SVKA 888
T + A + + +GF+++ + G I D V + P ++ +WI +P +++
Sbjct: 929 TTVSKAYFGSILIHAVVYGFFKIDK-RGRILDAVPVDNNPPIDIHTKGMWIDIPPLALEI 987
Query: 889 VVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPEC 926
+ +N + + +HAA HA+L ++P +V + D+ EC
Sbjct: 988 LQSRNLNIAAAIHAAEHAILSLLPTFVVSSPGDVRTEC 1025
>gi|261192430|ref|XP_002622622.1| DEAD/DEAH box helicase [Ajellomyces dermatitidis SLH14081]
gi|239589497|gb|EEQ72140.1| DEAD/DEAH box helicase [Ajellomyces dermatitidis SLH14081]
Length = 1155
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 281/757 (37%), Positives = 401/757 (52%), Gaps = 105/757 (13%)
Query: 246 SALKST-GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSAL 304
+AL +T GI+K YSHQAE+I GKNV+++T TSSGKSL Y +P+L L D S +
Sbjct: 337 NALYNTRGITKFYSHQAEAINNLHDGKNVIISTSTSSGKSLIYQVPMLHELEQDPHSRGM 396
Query: 305 YMFPTKALAQDQLRALLAMTKAFDA--SIDIGVYDGDTTQKDRMWLRDNARLLITNPDML 362
Y+FPTKALAQDQ R+L + + I + +DGDT DR +RD AR++ TNPDML
Sbjct: 397 YIFPTKALAQDQRRSLKELLGYIEGLEHILVETFDGDTPMADRNTIRDEARIIFTNPDML 456
Query: 363 HMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALIL 422
H++ILP + L NL+ FVV+DE H Y G FG H A I+
Sbjct: 457 HITILPQESFWRTFLKNLK-------------------FVVVDELHVYNGLFGSHVAFIM 497
Query: 423 RRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNP 482
RRL R+C+ V F+ +AT ANP EH + + ++L DGSP +K F+ WN
Sbjct: 498 RRLRRICAAVGNRRVKFISCSATVANPVEHMQTIFGIDDVKLTDIDGSPSGRKEFICWN- 556
Query: 483 TSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVL 542
T D + ++ + I E + LF ++V G+R IAFCR RK CEL+L
Sbjct: 557 ------------TPFRDPGDPSSGRGNSIQESARLFCQLVLRGVRVIAFCRVRKQCELLL 604
Query: 543 SYTREILEETAPHLVDSICV------YRAGYVAEDRRRIERDFFGGKLCGVAATNALELG 596
S R+ + +D I V YR GY +DRR+IERD F GKL G+ ATNALELG
Sbjct: 605 SAVRDEFKS-----LDRINVSRFVMGYRGGYSPQDRRKIERDMFEGKLLGIVATNALELG 659
Query: 597 IDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKS 656
+D+G +D + GFP SI++L QQ+GR+GRR + S+++ V DQY+M+ P++LF
Sbjct: 660 VDIGSLDAVITHGFPYSISNLRQQSGRAGRRNKDSVSILVGDSYATDQYYMQNPDELFTK 719
Query: 657 PIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGL---SSGITTLKNRGYLSSD 713
P +D +N VLE H+ CAA E P+ D +YFG L +S T N G+
Sbjct: 720 PNCELQVDLRNELVLEGHVQCAAFEMPIRPEEDTEYFGPQLYEFASARLTKDNLGF---- 775
Query: 714 PSLDSSAKIFEYIGHEKM---PSHTISIRAIESERYEVIDMQSNE--VLEEIEESKAFFQ 768
Y HE+ PS ++IR E Y +ID +N V+EEIEES+ FF
Sbjct: 776 -----------YHCHERFRPHPSKCVAIRDTEDNYYAIIDTTNNRNAVIEEIEESRVFFS 824
Query: 769 VYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISK 828
+YEG ++ HQG+ Y+VKELN + A + + + T+ RD+TDI +IS
Sbjct: 825 IYEGGIFFHQGNPYMVKELNTDRRFARVVRVHVDWTTQQRDFTDIDPV--ETEAIRRISA 882
Query: 829 DQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKA 888
TK A+ + T +G+++L + G I D V L P S+ +W+ VP+
Sbjct: 883 SANTKAFFGAI--RIRTVVYGYFKLDK-KGRILDAVALDNPPIEIMSKGMWLDVPKGALD 939
Query: 889 VVE-QNFSFRSGLHAASHALLHVVPIY-VRCNFSDLAPEC-------------------- 926
+++ +N + + +HAA HA+L ++P Y V + D+ EC
Sbjct: 940 ILKSRNLNAAAAIHAAEHAILSLMPTYIVSSSPGDVRTECKVAAKELGPKHRQALAHHDH 999
Query: 927 -------PNPHDSRYFPERILLYDRH--PGGTGVSKQ 954
P P +R P R+ YD P G+G+S +
Sbjct: 1000 AQSHAVPPPPKPARQRPARLTFYDAKGGPSGSGISAK 1036
>gi|239615215|gb|EEQ92202.1| DEAD/DEAH box helicase [Ajellomyces dermatitidis ER-3]
Length = 1155
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 280/757 (36%), Positives = 401/757 (52%), Gaps = 105/757 (13%)
Query: 246 SALKST-GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSAL 304
+AL +T GI+K YSHQAE+I GKNV+++T TSSGKSL Y +P+L L D S +
Sbjct: 337 NALYNTRGITKFYSHQAEAINNLHDGKNVIISTSTSSGKSLIYQVPMLHELEQDPHSRGM 396
Query: 305 YMFPTKALAQDQLRALLAMTKAFDA--SIDIGVYDGDTTQKDRMWLRDNARLLITNPDML 362
Y+FPTKALAQDQ R+L + + I + +DGDT DR +RD AR++ TNPDML
Sbjct: 397 YIFPTKALAQDQRRSLKELLGYIEGLEHILVETFDGDTPMADRNTIRDEARIIFTNPDML 456
Query: 363 HMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALIL 422
H++ILP + L NL+ FVV+DE H Y G FG H A I+
Sbjct: 457 HITILPQESFWRTFLKNLK-------------------FVVVDELHVYNGLFGSHVAFIM 497
Query: 423 RRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNP 482
RRL R+C+ V F+ +AT ANP EH + + ++L DGSP +K F+ WN
Sbjct: 498 RRLRRICAAVGNRRVKFISCSATVANPVEHMQTIFGIDDVKLTDIDGSPSGRKEFICWN- 556
Query: 483 TSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVL 542
T D + ++ + I E + LF ++V G+R IAFCR RK CEL+L
Sbjct: 557 ------------TPFRDPGDPSSGRGNSIQESARLFCQLVLRGVRVIAFCRVRKQCELLL 604
Query: 543 SYTREILEETAPHLVDSICV------YRAGYVAEDRRRIERDFFGGKLCGVAATNALELG 596
S R+ + +D I V YR GY +DRR+IERD F GKL G+ ATNALELG
Sbjct: 605 SAVRDEFKS-----LDRINVSRFVMGYRGGYSPQDRRKIERDMFEGKLLGIVATNALELG 659
Query: 597 IDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKS 656
+D+G +D + GFP SI++L QQ+GR+GRR + S+++ V DQY+M+ P++LF
Sbjct: 660 VDIGSLDAVITHGFPYSISNLRQQSGRAGRRNKDSVSILVGDSYATDQYYMQNPDELFTK 719
Query: 657 PIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGL---SSGITTLKNRGYLSSD 713
P +D +N VLE H+ CAA E P+ D +YFG L +S T N G+
Sbjct: 720 PNCELQVDLRNELVLEGHVQCAAFEMPIRPEEDTEYFGPQLYEFASARLTKDNLGF---- 775
Query: 714 PSLDSSAKIFEYIGHEKM---PSHTISIRAIESERYEVIDMQSNE--VLEEIEESKAFFQ 768
Y HE+ PS ++IR E Y +ID +N V+EEIEES+ FF
Sbjct: 776 -----------YHCHERFRPHPSKCVAIRDTEDNHYAIIDTTNNRNAVIEEIEESRVFFS 824
Query: 769 VYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISK 828
+YEG ++ HQG+ Y+VKELN + A + + + T+ RD+TDI +IS
Sbjct: 825 IYEGGIFFHQGNPYMVKELNTDRRFARVVRVHVDWTTQQRDFTDIDPV--ETEAIRRISA 882
Query: 829 DQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKA 888
TK A+ + T +G+++L + G I D V L P S+ +W+ VP+
Sbjct: 883 SANTKAFFGAI--RIRTVVYGYFKLDK-KGRILDAVALDNPPIEIMSKGMWLDVPKGALD 939
Query: 889 VVE-QNFSFRSGLHAASHALLHVVPIY-VRCNFSDLAPEC-------------------- 926
+++ +N + + +HAA HA+L ++P Y V + D+ EC
Sbjct: 940 ILKSRNLNAAAAIHAAEHAILSLMPTYIVSSSPGDVRTECKVAAKELGPKHRQALAHHDH 999
Query: 927 -------PNPHDSRYFPERILLYDRH--PGGTGVSKQ 954
P P +R P R+ YD P G+G++ +
Sbjct: 1000 AQSHAVPPPPKPARQRPARLTFYDAKGGPSGSGIAAK 1036
>gi|327349662|gb|EGE78519.1| DEAD/DEAH box helicase [Ajellomyces dermatitidis ATCC 18188]
Length = 1155
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 280/757 (36%), Positives = 401/757 (52%), Gaps = 105/757 (13%)
Query: 246 SALKST-GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSAL 304
+AL +T GI+K YSHQAE+I GKNV+++T TSSGKSL Y +P+L L D S +
Sbjct: 337 NALYNTRGITKFYSHQAEAINNLHDGKNVIISTSTSSGKSLIYQVPMLHELEQDPHSRGM 396
Query: 305 YMFPTKALAQDQLRALLAMTKAFDA--SIDIGVYDGDTTQKDRMWLRDNARLLITNPDML 362
Y+FPTKALAQDQ R+L + + I + +DGDT DR +RD AR++ TNPDML
Sbjct: 397 YIFPTKALAQDQRRSLKELLGYIEGLEHILVETFDGDTPMADRNTIRDEARIIFTNPDML 456
Query: 363 HMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALIL 422
H++ILP + L NL+ FVV+DE H Y G FG H A I+
Sbjct: 457 HITILPQESFWRTFLKNLK-------------------FVVVDELHVYNGLFGSHVAFIM 497
Query: 423 RRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNP 482
RRL R+C+ V F+ +AT ANP EH + + ++L DGSP +K F+ WN
Sbjct: 498 RRLRRICAAVGNRRVKFISCSATVANPVEHMQTIFGIDDVKLTDIDGSPSGRKEFICWN- 556
Query: 483 TSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVL 542
T D + ++ + I E + LF ++V G+R IAFCR RK CEL+L
Sbjct: 557 ------------TPFRDPGDPSSGRGNSIQESARLFCQLVLRGVRVIAFCRVRKQCELLL 604
Query: 543 SYTREILEETAPHLVDSICV------YRAGYVAEDRRRIERDFFGGKLCGVAATNALELG 596
S R+ + +D I V YR GY +DRR+IERD F GKL G+ ATNALELG
Sbjct: 605 SAVRDEFKS-----LDRINVSRFVMGYRGGYSPQDRRKIERDMFEGKLLGIVATNALELG 659
Query: 597 IDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKS 656
+D+G +D + GFP SI++L QQ+GR+GRR + S+++ V DQY+M+ P++LF
Sbjct: 660 VDIGSLDAVITHGFPYSISNLRQQSGRAGRRNKDSVSILVGDSYATDQYYMQNPDELFTK 719
Query: 657 PIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGL---SSGITTLKNRGYLSSD 713
P +D +N VLE H+ CAA E P+ D +YFG L +S T N G+
Sbjct: 720 PNCELQVDLRNELVLEGHVQCAAFEMPIRPEEDTEYFGPQLYEFASARLTKDNLGF---- 775
Query: 714 PSLDSSAKIFEYIGHEKM---PSHTISIRAIESERYEVIDMQSNE--VLEEIEESKAFFQ 768
Y HE+ PS ++IR E Y +ID +N V+EEIEES+ FF
Sbjct: 776 -----------YHCHERFRPHPSKCVAIRDTEDNHYAIIDTTNNRNAVIEEIEESRVFFS 824
Query: 769 VYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISK 828
+YEG ++ HQG+ Y+VKELN + A + + + T+ RD+TDI +IS
Sbjct: 825 IYEGGIFFHQGNPYMVKELNTDRRFARVVRVHVDWTTQQRDFTDIDPV--ETEAIRRISA 882
Query: 829 DQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKA 888
TK A+ + T +G+++L + G I D V L P S+ +W+ VP+
Sbjct: 883 SANTKAFFGAI--RIRTVVYGYFKLDK-KGRILDAVALDNPPIEIMSKGMWLDVPKGALD 939
Query: 889 VVE-QNFSFRSGLHAASHALLHVVPIY-VRCNFSDLAPEC-------------------- 926
+++ +N + + +HAA HA+L ++P Y V + D+ EC
Sbjct: 940 ILKSRNLNAAAAIHAAEHAILSLMPTYIVSSSPGDVRTECKVAAKELGPKHRQALAHHDH 999
Query: 927 -------PNPHDSRYFPERILLYDRH--PGGTGVSKQ 954
P P +R P R+ YD P G+G++ +
Sbjct: 1000 AQSHAVPPPPKPARQRPARLTFYDAKGGPSGSGIAAK 1036
>gi|402084005|gb|EJT79023.1| hypothetical protein GGTG_04113 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 1138
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 280/803 (34%), Positives = 424/803 (52%), Gaps = 82/803 (10%)
Query: 178 ARRSQSSTSSSHSFQRRCSDKSQLLPLEMVEHLRKGIGSQGQMVHVED--ISARKAVLVE 235
ARR S + S + + +P E+V+ L+ GQ+V ++ + E
Sbjct: 295 ARREPSPGPDTCSLPESIPVERKSMP-EIVQELKDSSFYSGQIVPGGHRVFEPQEPIFGE 353
Query: 236 IPDALLDNTKSAL-KSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEA 294
+ L + +AL + GI++ YSHQA +I G NVVVAT TSSGKSL Y LPVL A
Sbjct: 354 LNFLLSQDLVNALYNAKGITQFYSHQAVAINGLNDGHNVVVATSTSSGKSLIYQLPVLHA 413
Query: 295 LSHDLSSSALYMFPTKALAQDQLRAL---LAMTKAFDASIDIGVYDGDTTQKDRMWLRDN 351
L D ++ A+Y+FPTKALAQDQ R+L L+ + + + + +DGDT +DR +RD
Sbjct: 414 LEKDYAARAMYIFPTKALAQDQKRSLKEMLSYMRGLEGML-VDTFDGDTPTEDRNAIRDE 472
Query: 352 ARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYK 411
AR++ TNPDMLH++ILP ++ L NL+ +VV+DE H Y
Sbjct: 473 ARIIFTNPDMLHLTILPQEERWRTFLQNLK-------------------YVVVDELHYYN 513
Query: 412 GAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSP 471
G G H A+I+RRL R+C+ V FV +AT ANP+EH L + + L+ +DGSP
Sbjct: 514 GLMGSHVAMIMRRLRRICAAVGNRHVKFVSCSATVANPKEHFSTLFGIDDVLLVDSDGSP 573
Query: 472 CAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAF 531
+K + WN K D R A E + LF ++V G+R IAF
Sbjct: 574 SGRKEVLCWN-------TPYKVPGDASSGRGDAK------YECARLFCQLVLRGVRVIAF 620
Query: 532 CRSRKLCELVLSYTREILEETA-PHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAAT 590
CR R+ CE ++ + LE P + + YR GY +DRRRIE + F GKL GV AT
Sbjct: 621 CRVREQCEKLVGAVKAELERLGRPECIARVMGYRGGYTPQDRRRIEAEMFEGKLIGVVAT 680
Query: 591 NALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYP 650
ALELG+D+G +D L GFP +IA+ QQ+GR+GRR + SL+V V P DQY+M+ P
Sbjct: 681 TALELGVDIGSLDCVLTWGFPYTIANFRQQSGRAGRRNKDSLSVLVGDSFPTDQYYMQNP 740
Query: 651 EKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYL 710
++LF P +D N V E H+ CAA E P+ D +YFGS L
Sbjct: 741 DELFTQPNCALQVDLDNMLVREGHIQCAAYEMPIRSAEDAQYFGSDLGE----------- 789
Query: 711 SSDPSLDSSAKIFEYIG----HEKM---PSHTISIRAIESERYEVIDMQ--SNEVLEEIE 761
+ + + + +G H++ PS +SIR E E + +ID+ N VLEE+E
Sbjct: 790 -----ICAQRLVPDELGFHHCHDRFRPQPSRFMSIRDTEEEHFAIIDISHGRNVVLEELE 844
Query: 762 ESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNA 821
S+A F VY+GA+++HQG+TYLV++ N ++A ++ + + T+ RDYTD+ +
Sbjct: 845 ASRATFTVYDGAIFLHQGNTYLVRDFNPDKRMAKVERVKVDWTTQQRDYTDV-----DPI 899
Query: 822 YATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQ 881
I + + + A +T FGF+++ + + I+ D V + P S+ +W+
Sbjct: 900 ETEAIKRIDGSASRAYHGTIRITQVVFGFFKVDKRNRIL-DAVHVDNPPVVRFSKGMWLD 958
Query: 882 VPQSVKAVVEQ-NFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECP-------NPHDSR 933
+P++ ++E+ + + +HAA HA++ ++P +V D+ EC SR
Sbjct: 959 IPRAALEILEERRLNAAASIHAAEHAVMSLMPNFVISGPGDVRTECKAGLKEFSRRETSR 1018
Query: 934 YFPERILLYDRH--PGGTGVSKQ 954
P R+ YD GG+G++ +
Sbjct: 1019 KRPARLTFYDAKGGAGGSGINTK 1041
>gi|50288845|ref|XP_446852.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526161|emb|CAG59785.1| unnamed protein product [Candida glabrata]
Length = 1094
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 270/768 (35%), Positives = 407/768 (52%), Gaps = 78/768 (10%)
Query: 198 KSQLLPLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLY 257
+S+ L EMV L+K GQ+ +I R A E+ +D L + G S+ Y
Sbjct: 241 ESRPLMTEMVSKLKKSEHYNGQIKTHMEIPQRHAEYGELN---VDIDSEILDAIGYSQFY 297
Query: 258 SHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQL 317
SHQA++I A G+NV++ T TSSGKSL Y L + + + S+ +Y+FPTKALAQDQ
Sbjct: 298 SHQADAINAVHNGENVIITTSTSSGKSLIYQLSAFDLMFRNPESTFMYIFPTKALAQDQK 357
Query: 318 RALLAMTKAFDA--SIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSR 375
RA + + ++ + YDGDT + R ++R+NAR++ TNPDM+H SILP H + R
Sbjct: 358 RAFQVILSKIPSLKNVVVDTYDGDTDPEKRSFIRNNARVIFTNPDMIHASILPNHVNWRR 417
Query: 376 ILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGS 435
L NL L VVIDE H YKG FG H AL++RRL RLC Y +
Sbjct: 418 FLFNLHL-------------------VVIDELHIYKGLFGSHVALVMRRLLRLCREHYDN 458
Query: 436 D-PSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQ 494
F+ +AT NP +H M++ + + LI NDGSP K V+WNP SQ
Sbjct: 459 FFTRFISCSATLKNPVKHMMDIFGIDKVRLISNDGSPRGTKHLVVWNPPVL-------SQ 511
Query: 495 TDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAP 554
D K + ISE + + +++ +R IAFC R++CEL++ R I EE
Sbjct: 512 HD--------RKRENFISESAKILVDLILANVRTIAFCYVRRVCELLMKEVRSIFEEMGR 563
Query: 555 H-LVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGS 613
L+ + YR GY A DRR+IER+ F G L V +TNALELGID+G +D L GFP S
Sbjct: 564 QDLITDVMSYRGGYSAADRRKIEREMFHGNLKAVISTNALELGIDIGGLDAVLMCGFPLS 623
Query: 614 IASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSP----IECCHIDAQNHK 669
+A+ QQ+GR+GRR + SL V VA + P+DQ+++ +P+ L S + +D N
Sbjct: 624 LANFHQQSGRAGRRSKDSLTVVVASDSPVDQHYVAHPDLLMNSEDPDSFQDLVLDFTNML 683
Query: 670 VLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLK----NRGYLSSDPSLDSSAKIFEY 725
++E H+ CA+ E P+++ D+KYF L I + GY +
Sbjct: 684 IVEGHVQCASFELPVNIERDKKYFNDKLLRNICHERLQKDENGYHCN------------- 730
Query: 726 IGHEKMPSHTISIRAIESERYEVIDMQS--NEVLEEIEESKAFFQVYEGAVYMHQGHTYL 783
I PS +++R E +++ V+D+ + N+V+EE+E S+ F +Y+G +++HQG+ YL
Sbjct: 731 IRFLPWPSKHVNLRGAEEDQFAVVDITNGRNKVIEEVEASRTSFTLYDGGIFIHQGYPYL 790
Query: 784 VKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTV 843
VKE N K A Q+ D+ + T RD+TDI + + + T V
Sbjct: 791 VKEFNPEEKYATVQRVDVDWVTNQRDFTDI-----DPQEIEYVRSMEGTDVPVYFGKIKV 845
Query: 844 TTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVE-QNFSFRSGLHA 902
T FGF++L + II D VE++ P S+ +WI +P ++E + + +HA
Sbjct: 846 TIIVFGFFKLDKFKRII-DAVEVHNPPVIINSKGLWIDIPSRALEILESKQLNAAGAIHA 904
Query: 903 ASHALLHVVPIYVRCNFSDLAPECPNPHDS-------RYFPERILLYD 943
A HA++ ++P ++ +++ EC P R P R++ +D
Sbjct: 905 AQHAIMGLLPKFIVAGSNEIQTECKAPEKEFAERQTKRKRPARLVFFD 952
>gi|347837892|emb|CCD52464.1| similar to DEAD/DEAH box helicase [Botryotinia fuckeliana]
Length = 1166
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 264/745 (35%), Positives = 401/745 (53%), Gaps = 69/745 (9%)
Query: 229 RKAVLVEIPDALLDNTKSALKST-GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCY 287
++A+ ++ L N +AL +T I++ Y+HQAE+I G NV+VAT TSSGKSL Y
Sbjct: 362 QEAIYGDLNFVLSQNLVNALYNTKNITQFYAHQAEAINNLHDGHNVIVATSTSSGKSLIY 421
Query: 288 NLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTK---AFDASIDIGVYDGDTTQKD 344
+PVL L D S A+Y+FPTKALAQDQ R+L M + + +I + +DGDT KD
Sbjct: 422 QIPVLHELEKDPHSRAMYIFPTKALAQDQRRSLKEMMRFMTGLEEAI-VETFDGDTEMKD 480
Query: 345 RMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVI 404
R +RD R++ TNPDMLH++ILP ++ L NL+ +VV+
Sbjct: 481 RNMIRDEGRIIFTNPDMLHITILPQEDKWRTFLQNLK-------------------YVVV 521
Query: 405 DEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLEL 464
DE H Y G FG H A I+RRL R+C+ + F+ +AT ANP EH + + + +
Sbjct: 522 DEIHVYNGLFGSHVAFIMRRLRRICAALGNRRIKFISCSATVANPMEHFKTIFGIENVRM 581
Query: 465 IQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQH 524
DGSP +K F+ WN T D + A+ +E + LF +++
Sbjct: 582 TDFDGSPSGRKEFLCWN-------------TPFKDPADPASGRGDTRAEAARLFCQLILR 628
Query: 525 GLRCIAFCRSRKLCELVLSYTREILEETA-PHLVDSICVYRAGYVAEDRRRIERDFFGGK 583
G+R IAFCR R+ CE ++ +E L P + + YR GY +DRRRIE + F GK
Sbjct: 629 GVRVIAFCRVRRQCEALVGAVKEELATLGRPECMAQVMGYRGGYTPQDRRRIESEMFEGK 688
Query: 584 LCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLD 643
L G+ AT ALELG+D+G +D L +GFP +IA+L QQ+GR+GRR + SL+V + P D
Sbjct: 689 LMGIIATTALELGVDIGSLDAVLTVGFPYTIANLRQQSGRAGRRNKDSLSVLIGDCFPSD 748
Query: 644 QYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITT 703
QY+M P+++F P +D QN VLE H+ CAA E P+ D YF L+
Sbjct: 749 QYYMNNPDEIFTKPNCELQVDLQNILVLEGHVQCAAFEMPIRPDEDAIYFPKNLAE---- 804
Query: 704 LKNRGYLSSDPSLDSSAKIFEYIG--HEKMPSHTISIRAIESERYEVIDMQ--SNEVLEE 759
++ L F + + PS ++IR E + + +ID+ N VLEE
Sbjct: 805 -------VAEERLVKDELGFYHCSERYRPTPSKLVAIRDTEEDHFAIIDISHGKNIVLEE 857
Query: 760 IEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGN 819
+E S+AFF +Y+G +++HQG+TYLVKE + KIA + + + T+ RDYTD+ +
Sbjct: 858 LEASRAFFTLYDGGIFLHQGNTYLVKEFSPERKIAKVELVKVDWTTQQRDYTDV-----D 912
Query: 820 NAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVW 879
I + + + A A + FGF+++ + I+ D +++ P S+ +W
Sbjct: 913 PIETEAIRRIPNSLSRAFFGAIKIQQNVFGFFKVDKKRRIL-DAIQVDNPPIILHSKGMW 971
Query: 880 IQVPQ-SVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPEC-------PNPHD 931
+ VP+ +++ +VE+ + +HAA HA+L ++P +V D+ EC
Sbjct: 972 LDVPKLALEILVEKRLNIAGAIHAAEHAVLSLMPNFVISMPGDVRTECKIGMKDFAQKET 1031
Query: 932 SRYFPERILLYDRHPG--GTGVSKQ 954
+R P R+ YD G G+G+S +
Sbjct: 1032 TRKRPARLTFYDAKGGASGSGISTK 1056
>gi|392596054|gb|EIW85377.1| DEAD H helicase [Coniophora puteana RWD-64-598 SS2]
Length = 1057
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 267/756 (35%), Positives = 409/756 (54%), Gaps = 73/756 (9%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSAL-KSTGISKLYSHQAES 263
E+++++++ Q Q+VH + AR+A + ++ L D+ + AL S I+ LY HQA++
Sbjct: 253 EIIDNIQEQEWYQNQIVHRRIVEARQATIGDLVTPLSDSLRQALWDSRNITTLYRHQAQA 312
Query: 264 IMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAM 323
I A AG++V+V+T T+SGKS+ Y +P++ L D S++A++++PTKALAQDQ AL ++
Sbjct: 313 INALAAGQHVIVSTSTASGKSVIYQVPLIRCLEEDPSATAIFIYPTKALAQDQRTALESL 372
Query: 324 TKAFDA--SIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLR 381
A + + YDGDT Q +R +R+ A ++ TN DM+H SILP+ + + NL+
Sbjct: 373 LWASPGLHHVKVSTYDGDTPQDERASIREQASVIFTNFDMMHASILPHEDDWRTFMKNLK 432
Query: 382 LIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVF 441
L+A +DE H Y G H A ILRR R+C+ V FV
Sbjct: 433 LVA-------------------VDELHYYSDIMGSHVAQILRRFRRVCTAVGNRRVRFVS 473
Query: 442 STATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTR 501
+AT +NP +H ++ + +E I D +P +K +++W+P D+
Sbjct: 474 CSATISNPLQHMKQMFGVDNVEAITEDSAPSGRKDYLVWDPPYI-------------DSG 520
Query: 502 NAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LVDSI 560
A S I+E + L +++ G+R I FC+ RK CEL + R L H ++ +
Sbjct: 521 AANLGKKSSIAEATGLMRFLMKQGVRVILFCKIRKACELAMKTLRADLSAEGRHDVLAKV 580
Query: 561 CVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQ 620
YR GY +DRRR+E++ F G L G+ ATNALELG+D+G +D + LGFP +AS QQ
Sbjct: 581 MPYRGGYNQQDRRRLEKEAFTGNLLGIVATNALELGVDIGVLDAVIMLGFPFGLASFRQQ 640
Query: 621 AGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAAL 680
AGR+GRR R SLAV VA P+DQ+++ +P++L+ P + +D +N +LE HL CAA
Sbjct: 641 AGRAGRRSRDSLAVLVADGLPIDQHYVNFPDELYNKPTKELIVDLENKIILEAHLQCAAQ 700
Query: 681 EHPLSLIYDEKYFGSGLS---SGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTIS 737
E PLS D YFG L G+ + P K Y PS +S
Sbjct: 701 EMPLSKEEDSIYFGPMLGELCDQKLVRDKEGWYHTHP------KFLPY------PSKFVS 748
Query: 738 IRAIESERYEVIDMQSNE--VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIAL 795
IR E E+Y VID+ E ++EEIE S+A F++YEG V+MHQG T++VKE++ K A
Sbjct: 749 IRGAEEEKYIVIDITKAEPKIIEEIEFSRALFELYEGGVFMHQGLTFIVKEISNEMKTAK 808
Query: 796 CQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWR 855
+AD+ + T RD+TD+ N +I + + A VTT +GFY++
Sbjct: 809 VMRADVNWITSPRDFTDV-----NAVQVYRIKEIAGSSHRAYYGRVDVTTIVYGFYKIRN 863
Query: 856 GSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVE-QNFSFRSGLHAASHALLHVVPIY 914
I DTVE+ P + +W+ VP+S+ ++ +N + +HAA HA L+ +
Sbjct: 864 KQ--ILDTVEIDSPPWERSVTGLWLDVPKSLLGLLRAKNINAAEAIHAACHAWLNRFALA 921
Query: 915 VRCNFSDLAPEC-------PNPHDSRYFPERILLYD 943
V DL EC + +R P R++ YD
Sbjct: 922 V-----DLKTECKAAEKEYKSSESARKRPARLIFYD 952
>gi|307111752|gb|EFN59986.1| hypothetical protein CHLNCDRAFT_133118 [Chlorella variabilis]
Length = 1486
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 229/443 (51%), Positives = 302/443 (68%), Gaps = 36/443 (8%)
Query: 511 ISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAE 570
I E+S L AE VQHGLR IAFC+SRKLCELV +Y RE L+ TAPHL DSI VYRAGY
Sbjct: 1000 IVELSLLLAECVQHGLRTIAFCKSRKLCELVTAYVRETLKCTAPHLADSIAVYRAGYSPA 1059
Query: 571 DRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERP 630
+RR IER F G L VAATNALELG+DVG +D TLHLGFPGS+ASLWQQAGR+GRRE+
Sbjct: 1060 ERREIERALFRGSLRAVAATNALELGVDVGSLDCTLHLGFPGSVASLWQQAGRAGRREQA 1119
Query: 631 SLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDE 690
L +Y+ ++GPLDQYFM++P +LF P+E +DA+N VLE HL CAA E PL L D+
Sbjct: 1120 CLGIYLGWDGPLDQYFMRHPAQLFGRPVERALVDARNPSVLEAHLACAAAEAPLLLEDDQ 1179
Query: 691 KYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVID 750
YFG+GL + L++ L P L S ++ Y+G P+ IS+RAI+ ERY ++D
Sbjct: 1180 HYFGAGLPAIAAALQSAALLGRHP-LAPSPRVLHYVGAVASPASKISLRAIDPERYAIVD 1238
Query: 751 MQ-SNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRD 809
++LEEIEESKAFFQVY+GAVYM+QG TYL K+L+L +++A+ + AD+KY+T
Sbjct: 1239 ESLGGQLLEEIEESKAFFQVYDGAVYMYQGRTYLCKKLDLDARVAVVRPADVKYYT---- 1294
Query: 810 YTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLP 869
N A VT W GF R+WRG+G +FDTV+L+LP
Sbjct: 1295 ---------NQA--------------------VVTVRWLGFRRIWRGTGQVFDTVDLFLP 1325
Query: 870 KYSYESQAVWIQVPQSVKA-VVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPN 928
+E++A + +PQ+ + + + FR G+HAA HALL+V+P+Y+ CN +D+ EC N
Sbjct: 1326 DVQFETEAAYCCLPQATRRRLKDTGLPFRDGVHAACHALLNVLPLYLMCNPNDVGTECDN 1385
Query: 929 PHDSRYFPERILLYDRHPGGTGV 951
P+D+RY PERIL++D+HPGG G+
Sbjct: 1386 PYDTRYKPERILIFDKHPGGIGL 1408
Score = 240 bits (612), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 141/306 (46%), Positives = 185/306 (60%), Gaps = 35/306 (11%)
Query: 183 SSTSSSHSFQRRCSDKSQLLPLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLD 242
++ SSH R L P +EHL+ QGQ VH E ++AR+A L
Sbjct: 435 AARRSSH----RPPAAGALGPARFLEHLKALPWYQGQAVHEEQMAARQAQHATPATPLAP 490
Query: 243 NTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSS 302
+AL+ G+ ++++HQA + G++ VVAT T+SGKSLCY +P+L+AL+ D +
Sbjct: 491 AVAAALQLRGVGRIFTHQAAT------GRHTVVATSTASGKSLCYTIPILQALAQDRGAC 544
Query: 303 ALYMFPTKALAQDQLRALL-AMTKAFDASID-----IGVYDGDTTQKDRMWLRDNARLLI 356
AL MFPTKALAQDQLRAL A AF + + + VYDGDT +R +RD A+LLI
Sbjct: 545 ALLMFPTKALAQDQLRALREACAAAFGSGGEQAVPHVEVYDGDTPMAERGTIRDRAQLLI 604
Query: 357 TNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGC 416
TNPDMLHMS+LP H QF R+L NL+ +VV+DE HAYKG FGC
Sbjct: 605 TNPDMLHMSVLPVHQQFGRLLGNLK-------------------YVVVDEGHAYKGVFGC 645
Query: 417 HTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKL 476
H AL+LRRL RLC VY S P+F +TAT ANPREH +EL + + ++ DGSP +
Sbjct: 646 HAALVLRRLRRLCDRVYHSRPTFAVTTATLANPREHALELLGVLDVHVVAEDGSPHGPRT 705
Query: 477 FVLWNP 482
FV+WNP
Sbjct: 706 FVMWNP 711
>gi|259479905|tpe|CBF70556.1| TPA: DEAD/DEAH box helicase, putative (AFU_orthologue; AFUA_2G10820)
[Aspergillus nidulans FGSC A4]
Length = 1210
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 273/752 (36%), Positives = 407/752 (54%), Gaps = 75/752 (9%)
Query: 205 EMVEHLRKGIGSQGQMVHV--EDISARKAVLVEIPDALLDNTKSALKST-GISKLYSHQA 261
E++E +R GQ+V A+ A+ ++ AL + +AL +T GI++ YSHQA
Sbjct: 346 EIIEEIRCLDWYTGQIVPDGHRAFDAQPAIYGDLRFALSQDLVNALYNTKGITRFYSHQA 405
Query: 262 ESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALL 321
E+I GKNV+V+T TSSGKSL Y +P+L L D S +Y+FPTKALAQDQ R++
Sbjct: 406 EAINHLHDGKNVIVSTSTSSGKSLIYQVPMLHELEQDSDSRGMYIFPTKALAQDQKRSMQ 465
Query: 322 AMTKAFDA--SIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSN 379
+ + ++ + +DGDT +R +RD AR++ TNPDMLH++ILP + L N
Sbjct: 466 ELLQYLNSLQGTMVETFDGDTPMANRNLIRDEARIIFTNPDMLHITILPQESSWRTFLQN 525
Query: 380 LRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSF 439
L+ FVV+DE H Y G FG H ALI+RRL R+C+ V F
Sbjct: 526 LK-------------------FVVVDELHVYNGLFGSHVALIMRRLRRICAAVGNRHVRF 566
Query: 440 VFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDD 499
+ +AT ANP EH + + ++LI DGSPC +K F+ WN T D
Sbjct: 567 ISCSATVANPEEHMRAIFGVDDVQLIDFDGSPCGRKEFLCWN-------------TPFKD 613
Query: 500 TRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTR-EILEETAPHLVD 558
+ + ++E + LF +++ G R IAFCR RKLCE++L R E P + +
Sbjct: 614 PGDPTSGRGDSVAEAARLFCQLILRGARVIAFCRIRKLCEVLLQAVRSECNRLERPEVGN 673
Query: 559 SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLW 618
I YR GY +DRRRIE + F G+L G+ ATNALELG+D+G +D + LGFP SI++L
Sbjct: 674 MIMGYRGGYSPQDRRRIEAEMFQGQLLGIVATNALELGVDIGSLDAVITLGFPYSISNLR 733
Query: 619 QQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCA 678
QQ+GR+GRR + SL++ + P DQ++M+ PE+LF P +D N VLE H+ CA
Sbjct: 734 QQSGRAGRRNKDSLSILIGERYPTDQFYMRNPEELFSKPNCELQVDLTNELVLEGHVQCA 793
Query: 679 ALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKM---PSHT 735
A E P+ D+ YFG LS +T R + Y HE+ PS
Sbjct: 794 AFELPIKPDDDQIYFGPQLSEFASTRLVRDAMGF------------YHCHERFRPQPSRC 841
Query: 736 ISIRAIESERYEVIDMQS--NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKI 793
+ IR E + + VID + N VLEE+E S+AFF +YEG +++HQG TYLVKELN
Sbjct: 842 VPIRDTEDQHFAVIDTTNARNVVLEEVEASRAFFTLYEGGIFLHQGQTYLVKELNPDRFF 901
Query: 794 ALCQKADLKYFTKTRDYTDIH---------VSGGNNAYATKISKDQLTKTTAQALACTVT 844
A + + T RD+TDI ++ + ATKI+ T++ + +
Sbjct: 902 ARVVCVTVDWNTMQRDFTDIDPVETEHMRLITSSSPTKATKITDSSSTRSLEREKERAIR 961
Query: 845 TTW---------FGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVE-QNF 894
+ +GF+++ + G + D V + P + ++ +W+ VP+ ++E +
Sbjct: 962 AFFGPIRIHAIVYGFFKIDK-RGRVLDAVAVDNPPITIMTKGMWLDVPKVALDILESRRL 1020
Query: 895 SFRSGLHAASHALLHVVPIYVRCNFSDLAPEC 926
+ + +HAA HA+L ++P +V + D+ EC
Sbjct: 1021 NIAAAIHAAEHAILSLLPSFVISSPGDVRTEC 1052
>gi|67539510|ref|XP_663529.1| hypothetical protein AN5925.2 [Aspergillus nidulans FGSC A4]
gi|40738598|gb|EAA57788.1| hypothetical protein AN5925.2 [Aspergillus nidulans FGSC A4]
Length = 1720
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 273/752 (36%), Positives = 407/752 (54%), Gaps = 75/752 (9%)
Query: 205 EMVEHLRKGIGSQGQMVHV--EDISARKAVLVEIPDALLDNTKSALKST-GISKLYSHQA 261
E++E +R GQ+V A+ A+ ++ AL + +AL +T GI++ YSHQA
Sbjct: 856 EIIEEIRCLDWYTGQIVPDGHRAFDAQPAIYGDLRFALSQDLVNALYNTKGITRFYSHQA 915
Query: 262 ESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALL 321
E+I GKNV+V+T TSSGKSL Y +P+L L D S +Y+FPTKALAQDQ R++
Sbjct: 916 EAINHLHDGKNVIVSTSTSSGKSLIYQVPMLHELEQDSDSRGMYIFPTKALAQDQKRSMQ 975
Query: 322 AMTKAFDA--SIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSN 379
+ + ++ + +DGDT +R +RD AR++ TNPDMLH++ILP + L N
Sbjct: 976 ELLQYLNSLQGTMVETFDGDTPMANRNLIRDEARIIFTNPDMLHITILPQESSWRTFLQN 1035
Query: 380 LRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSF 439
L+ FVV+DE H Y G FG H ALI+RRL R+C+ V F
Sbjct: 1036 LK-------------------FVVVDELHVYNGLFGSHVALIMRRLRRICAAVGNRHVRF 1076
Query: 440 VFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDD 499
+ +AT ANP EH + + ++LI DGSPC +K F+ WN T D
Sbjct: 1077 ISCSATVANPEEHMRAIFGVDDVQLIDFDGSPCGRKEFLCWN-------------TPFKD 1123
Query: 500 TRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTR-EILEETAPHLVD 558
+ + ++E + LF +++ G R IAFCR RKLCE++L R E P + +
Sbjct: 1124 PGDPTSGRGDSVAEAARLFCQLILRGARVIAFCRIRKLCEVLLQAVRSECNRLERPEVGN 1183
Query: 559 SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLW 618
I YR GY +DRRRIE + F G+L G+ ATNALELG+D+G +D + LGFP SI++L
Sbjct: 1184 MIMGYRGGYSPQDRRRIEAEMFQGQLLGIVATNALELGVDIGSLDAVITLGFPYSISNLR 1243
Query: 619 QQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCA 678
QQ+GR+GRR + SL++ + P DQ++M+ PE+LF P +D N VLE H+ CA
Sbjct: 1244 QQSGRAGRRNKDSLSILIGERYPTDQFYMRNPEELFSKPNCELQVDLTNELVLEGHVQCA 1303
Query: 679 ALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKM---PSHT 735
A E P+ D+ YFG LS +T R + Y HE+ PS
Sbjct: 1304 AFELPIKPDDDQIYFGPQLSEFASTRLVRDAMGF------------YHCHERFRPQPSRC 1351
Query: 736 ISIRAIESERYEVIDMQS--NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKI 793
+ IR E + + VID + N VLEE+E S+AFF +YEG +++HQG TYLVKELN
Sbjct: 1352 VPIRDTEDQHFAVIDTTNARNVVLEEVEASRAFFTLYEGGIFLHQGQTYLVKELNPDRFF 1411
Query: 794 ALCQKADLKYFTKTRDYTDIH---------VSGGNNAYATKISKDQLTKTTAQALACTVT 844
A + + T RD+TDI ++ + ATKI+ T++ + +
Sbjct: 1412 ARVVCVTVDWNTMQRDFTDIDPVETEHMRLITSSSPTKATKITDSSSTRSLEREKERAIR 1471
Query: 845 TTW---------FGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVE-QNF 894
+ +GF+++ + G + D V + P + ++ +W+ VP+ ++E +
Sbjct: 1472 AFFGPIRIHAIVYGFFKIDK-RGRVLDAVAVDNPPITIMTKGMWLDVPKVALDILESRRL 1530
Query: 895 SFRSGLHAASHALLHVVPIYVRCNFSDLAPEC 926
+ + +HAA HA+L ++P +V + D+ EC
Sbjct: 1531 NIAAAIHAAEHAILSLLPSFVISSPGDVRTEC 1562
>gi|159129487|gb|EDP54601.1| DEAD/DEAH box helicase, putative [Aspergillus fumigatus A1163]
Length = 1206
Score = 447 bits (1150), Expect = e-122, Method: Compositional matrix adjust.
Identities = 265/711 (37%), Positives = 393/711 (55%), Gaps = 63/711 (8%)
Query: 228 ARKAVLVEIPDALLDNTKSALKST-GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLC 286
A+ AV ++ L + +AL +T GI++ Y HQAE+I + AG++V+V+T TSSGKSL
Sbjct: 386 AQSAVYGDLTFQLSQDLVNALYNTKGITQFYLHQAEAINSLYAGEDVIVSTSTSSGKSLI 445
Query: 287 YNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGV--YDGDTTQKD 344
Y +P+L L D +S +Y+FPTKALAQDQ R++ + + D D+ V +DGDT
Sbjct: 446 YQVPMLHELGRDPNSRGMYIFPTKALAQDQKRSIKELLQFMDGLQDVMVETFDGDTPMGS 505
Query: 345 RMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVI 404
R +RD AR++ TNPDMLH++ILP + L NL+ FVV+
Sbjct: 506 RNLIRDEARIIFTNPDMLHITILPQESSWRTFLKNLK-------------------FVVV 546
Query: 405 DEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLEL 464
DE H Y G FG H A I+RRL R+C+ V F+ +AT ANP EH + + ++ L
Sbjct: 547 DELHVYNGLFGSHVAFIMRRLRRICAAVGNRHVRFISCSATVANPEEHMKAVFGIDSVRL 606
Query: 465 IQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQH 524
I DGSP +K F+ WN T D + + ++E + LF +++
Sbjct: 607 IDFDGSPSGRKEFLCWN-------------TPYKDPNDPTSGRGDSVAETARLFCQLILR 653
Query: 525 GLRCIAFCRSRKLCELVLSYTREILEETA-PHLVDSICVYRAGYVAEDRRRIERDFFGGK 583
G R IAFCR RK+CE++L R + P + + YR GY +DRR+IER+ F G
Sbjct: 654 GARVIAFCRIRKMCEVLLQAVRNEFQAIGRPEVGKLVMGYRGGYSPQDRRKIEREMFEGH 713
Query: 584 LCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLD 643
L G+ ATNALELG+D+G +D + LGFP SI++L QQ+GR+GRR + SL+V V P D
Sbjct: 714 LLGIVATNALELGVDIGSLDAVITLGFPYSISNLRQQSGRAGRRNKDSLSVLVGDRFPAD 773
Query: 644 QYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITT 703
QY+M+ P++LF P ID N +LE H+ CAA E P+ D YFG L I
Sbjct: 774 QYYMQNPDELFTKPHCELQIDLSNELILEGHVQCAAFEMPIRPDEDHVYFGKQLHE-IAA 832
Query: 704 LKNRGYLSSDPSLDSSAKIFEYIGHEKM---PSHTISIRAIESERYEVIDMQS--NEVLE 758
++ L D Y HE+ PS + IR E + + VID + N VLE
Sbjct: 833 MR----LVRD-------SFGFYHCHERFRPHPSRCVPIRDTEDQHFAVIDATNARNVVLE 881
Query: 759 EIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGG 818
E+E S+AFF +YEG +++HQG TYLVKELN + A K + + T RDYTDI
Sbjct: 882 EVEASRAFFTIYEGGIFLHQGQTYLVKELNTDQRFARVVKVHVDWSTMQRDYTDI----- 936
Query: 819 NNAYATKISKDQLTKTTAQALACTVT--TTWFGFYRLWRGSGIIFDTVELYLPKYSYESQ 876
+ T++ + + ++A +V +GF+++ + G + D V + P + ++
Sbjct: 937 -DPIETEVMRQINQSSASRAFYGSVQIHAVVYGFFKIDK-RGRVLDAVAVDNPPINIFTK 994
Query: 877 AVWIQVPQSVKAVVE-QNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPEC 926
+W+ VP+ ++E + + + +HAA HA+L ++P +V + D+ EC
Sbjct: 995 GMWLDVPKRALEILESRRLNIAAAIHAAEHAVLSLLPTFVISSPGDVKTEC 1045
>gi|325182760|emb|CCA17215.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
gi|325189166|emb|CCA23690.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 1068
Score = 447 bits (1149), Expect = e-122, Method: Compositional matrix adjust.
Identities = 323/1049 (30%), Positives = 521/1049 (49%), Gaps = 170/1049 (16%)
Query: 20 IVEAFAFVSIFSAHLQLRREKVILSHVKGALNQLEKFG-VRVGIEDIENLAVLCPKVVQF 78
+++ FA V +++ L R+K +LS V+ +N G V V ED+E +A + P ++Q
Sbjct: 1 MLQKFALVD--TSYCFLARQKALLS-VQNIVNLATSLGNVSVTYEDVERMAKIAPLLMQ- 56
Query: 79 ANDDMESKNHDDSIVIINVSTEERDKVEDNLGSGQKAISLSKIFNAMKKRERSFKTNLWE 138
+ N + +S + S + + KIF + S ++N E
Sbjct: 57 ----IRPMNRRQIYKVFLISPQ---------ASQRASKKRQKIF---ENTFHSLESNSLE 100
Query: 139 AVNLLMCKLQKRVMSLSVEDLLTYVKERRTDVRGNEVKRARRSQSSTSSSHS------FQ 192
+ +C +K V + + E + E + +V RR ++ + ++ Q
Sbjct: 101 GASEPICGGEK-VSATNTETIACEESEAKGSANDEQVTNKRRKENENDALNANEANIDTQ 159
Query: 193 RRCSDKSQLLPL------------EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDAL 240
K+Q++ E +E LR+ Q +H+E AR+A V +
Sbjct: 160 NDIDTKAQIVERILAATARGHVCREWIESLRRMECFDNQFIHIEKRRAREAKTVLLEKMT 219
Query: 241 L-DNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDL 299
+ TK+AL++ G+ LYSHQA +I A G NV++ T T+SGKSL + +P +E L D
Sbjct: 220 FSERTKAALRNRGLESLYSHQARAIEAINGGSNVMLCTSTASGKSLSFIIPTIEDLLQDA 279
Query: 300 ----SSSALYMFPTKALAQDQLRALLAMTKAFDASIDIG--------------------- 334
SS+ +Y+FPTKALAQDQLR++ + + S+ +
Sbjct: 280 GCNESSAFIYLFPTKALAQDQLRSV----REYLMSVKLSPSYCCTFVSHFIILWLSAFHR 335
Query: 335 -VYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVY 393
+ DGDT +DR L +AR+ + NPD+LH ++LP H ++ RIL L
Sbjct: 336 LLQDGDTDIRDRAALIRDARIFLMNPDVLHHTVLPQHSRWKRILGKL------------- 382
Query: 394 LIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHC 453
R++V+DE+H Y+G FG H + + RRL RLC+ +YG+ P + +A+ NP++H
Sbjct: 383 ------RYIVVDESHMYRGVFGTHVSNVFRRLFRLCA-LYGAYPQTICCSASIGNPKQHF 435
Query: 454 MELA-----NLST-------------LELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQ- 494
L +L++ LELI+ DGSP +K LWNP + N ++
Sbjct: 436 QNLIPVVPRDLTSSFPPQYAFLQPRDLELIEEDGSPSGEKWVCLWNPQASRIRTENSTKL 495
Query: 495 -----------------------TDMDDT-RNAANKTSSPISEVSYLFAEMVQHGLRCIA 530
T++ D + T SPI + + + +++++ + +
Sbjct: 496 AHVGWKKQKIKVAASSSASHDNATEISDVGEDTQRATKSPIFQSACIMSKLIEMNVHTLM 555
Query: 531 FCRSRKLCELVLSYTREILEET--APHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVA 588
FC RKL ELVL + IL+++ L+ + YR GY +DRR IE+ F G L GV
Sbjct: 556 FCNGRKLAELVLMNVQSILKKSKATKGLLRRVLTYRGGYSVKDRRSIEQRLFQGDLLGVV 615
Query: 589 ATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRER-PSLAVYVAFEGPLDQYFM 647
ATNALELGIDVGH+D TLHLGFP SI+SLWQQAGR+GR+ SL++ + F+ PLDQYF
Sbjct: 616 ATNALELGIDVGHLDCTLHLGFPSSISSLWQQAGRAGRKHTVASLSIIICFDSPLDQYFC 675
Query: 648 KYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEK----YFGSGLSSGITT 703
++ ++LF E ++ N ++L HLVCAA E S I+ +K +F S L T
Sbjct: 676 RHSDELFTLIPEAANLQLGNVQILHHHLVCAARE---SAIFSKKSGSVHFDSFLWPD-NT 731
Query: 704 LKNRGYLSSDPSLDSSAKIF--EYIGHEKMPSHT-----ISIRAIESERYEVIDMQSNEV 756
LK SL KI + G++ P + +++R+I + Y+V+ N+
Sbjct: 732 LKTHVV-----SLVQEKKIIAGDEHGYQLHPCLSSTYRYLNLRSINDKMYKVLTSDDNDP 786
Query: 757 -----LEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQ--KADLKYFTKTRD 809
L+EI ++AFFQVY AVY+HQG YL+ LN + A+ + K++L Y++ RD
Sbjct: 787 DHWIELDEIPSTRAFFQVYPTAVYLHQGKEYLITHLNHEERFAIAERCKSELSYYSSCRD 846
Query: 810 YTDIHV--SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELY 867
+T++ + + G A +T KT +VTT+ G + + + +
Sbjct: 847 FTNVDIVRTFGTKAISTHARS---CKTYLSTGVVSVTTSVIGSAMYKKRTMALIQSNTFS 903
Query: 868 LPKYSYESQAVWIQVPQSV-KAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPEC 926
LP + S+A+WI +P S+ K +++ LH H L +VP+++RC+ D+ E
Sbjct: 904 LPPMQHISEALWIDLPSSIQKQFRSAGYNWNGSLHGVGHLLTSLVPLFIRCDPGDIDTEH 963
Query: 927 PNPHDSRYFPERILLYDRHPGGTGVSKQV 955
+P + R P RI +Y++ GGTG+ ++
Sbjct: 964 YHPKEQRSRPRRITMYEKREGGTGIVSEL 992
>gi|119481055|ref|XP_001260556.1| DEAD/DEAH box helicase, putative [Neosartorya fischeri NRRL 181]
gi|119408710|gb|EAW18659.1| DEAD/DEAH box helicase, putative [Neosartorya fischeri NRRL 181]
Length = 1240
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 255/689 (37%), Positives = 380/689 (55%), Gaps = 64/689 (9%)
Query: 250 STGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPT 309
+ GI++ YSHQAE++ + AG++V+V+T TSSGKSL Y +P+L L D +S +Y+FPT
Sbjct: 443 TKGITQFYSHQAEAVNSLYAGQDVIVSTSTSSGKSLIYQVPMLHELGRDPNSRGMYIFPT 502
Query: 310 KALAQDQLRALLAMTKAFDASIDIGV--YDGDTTQKDRMWLRDNARLLITNPDMLHMSIL 367
KALAQDQ R++ + + D D+ V +DGDT R +RD AR++ TNPDMLH++IL
Sbjct: 503 KALAQDQKRSMKELLQFMDGLQDVMVETFDGDTPMGTRNLIRDEARIIFTNPDMLHITIL 562
Query: 368 PYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCR 427
P + L NL+ FVV+DE H Y G FG H A I+RRL R
Sbjct: 563 PQESSWRTFLKNLK-------------------FVVVDELHVYNGLFGSHVAFIMRRLRR 603
Query: 428 LCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLR 487
+C+ V F+ +AT ANP EH + + + LI DGSP +K F+ WN
Sbjct: 604 ICAAVGNRHVRFISCSATVANPEEHMKAVFGIDDVRLIDFDGSPSGRKEFLCWN------ 657
Query: 488 SVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTRE 547
T D ++ + ++E + LF +++ G R IAFCR RK CE++L R
Sbjct: 658 -------TPYKDPTDSTSGRGDSVAETARLFCQLILRGARVIAFCRIRKTCEVLLQAVRN 710
Query: 548 ILEETAPHLVDSICV-YRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTL 606
+ V + + YR GY +DRR+IE++ F G L G+ ATNALELG+D+G +D +
Sbjct: 711 EFQALDRLEVGKLVMGYRGGYSPQDRRKIEKEMFEGHLLGIVATNALELGVDIGSLDAVI 770
Query: 607 HLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQ 666
LGFP SI++L QQ+GR+GRR + SL+V V P DQY+M+ P++LF P ID
Sbjct: 771 TLGFPYSISNLRQQSGRAGRRNKDSLSVLVGDRFPTDQYYMQNPDELFTKPNCELQIDLS 830
Query: 667 NHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYI 726
N +LE H+ CAA E P+ D+ YFG L T + Y
Sbjct: 831 NELILEGHVQCAAFEMPIRPDEDQVYFGEQLHELAATRLVKDTFGF------------YH 878
Query: 727 GHEKM---PSHTISIRAIESERYEVIDMQS--NEVLEEIEESKAFFQVYEGAVYMHQGHT 781
HE+ PS + IR E + + +ID + N VLEE+E S+AFF +YEG +++HQG T
Sbjct: 879 CHERFRPHPSRCVPIRDTEDQHFAIIDATNARNVVLEEVEASRAFFTIYEGGIFLHQGQT 938
Query: 782 YLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQAL-- 839
YLVKELN + A K + + T RDYTDI + T++ + Q+ +T+A
Sbjct: 939 YLVKELNTDQRFARVVKVHVDWSTMQRDYTDI------DPIETEMMR-QINQTSASRAFY 991
Query: 840 -ACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVE-QNFSFR 897
+ + +GF+++ + G + D V + P ++ +W+ VP+ ++E + +
Sbjct: 992 GSVQIHAVVYGFFKIDK-RGRVLDAVAVDNPPIDIFTKGIWLDVPKRALEILESRRLNIA 1050
Query: 898 SGLHAASHALLHVVPIYVRCNFSDLAPEC 926
+ +HAA HA+L ++P +V + D+ EC
Sbjct: 1051 AAIHAAEHAVLSLLPTFVISSPGDVKTEC 1079
>gi|400596365|gb|EJP64139.1| DEAD/DEAH box helicase [Beauveria bassiana ARSEF 2860]
Length = 1143
Score = 444 bits (1142), Expect = e-121, Method: Compositional matrix adjust.
Identities = 257/730 (35%), Positives = 389/730 (53%), Gaps = 80/730 (10%)
Query: 250 STGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPT 309
+ GIS Y+HQAE++ A GKNVVVAT TSSGKSL Y LPVL AL D S A+Y+FPT
Sbjct: 353 AKGISSFYAHQAEALNALHEGKNVVVATSTSSGKSLIYQLPVLHALEQDFESRAMYIFPT 412
Query: 310 KALAQDQLRAL---LAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSI 366
KALAQDQ R+L +A + ++ + +DGDT R +R+ AR++ TNPDM+H++I
Sbjct: 413 KALAQDQRRSLKEMMAYMPGLEGTV-VETFDGDTPFNTRNAIREQARIIFTNPDMMHITI 471
Query: 367 LPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLC 426
LP ++ L NL+ +VV+DE H Y G FG H A ++RRL
Sbjct: 472 LPQEEKWRTFLKNLK-------------------YVVVDELHYYNGQFGSHVAFVMRRLR 512
Query: 427 RLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCL 486
R+C+ + F+ +AT ANP +H L + ++L+ DGSP +K F+ WN
Sbjct: 513 RICAAIGNRSVQFISCSATVANPAQHFKALFGIDNVKLVDFDGSPSGRKEFICWN----- 567
Query: 487 RSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTR 546
T D + A+ S E + LF E++ G+R IAFCR R CE++++ R
Sbjct: 568 --------TPYKDPGDPASGRGSAKFECARLFCELLLRGVRIIAFCRVRNQCEVLVNAIR 619
Query: 547 EILEETA-PHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVT 605
+ LE + + YR GY AEDRR+IE + F G+L G+ +T ALELGID+G +D
Sbjct: 620 QELENRGRSDCIGLVMGYRGGYTAEDRRKIESEMFAGRLLGIVSTTALELGIDIGTLDCV 679
Query: 606 LHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDA 665
L GFP +IA+L QQ+GR+GRR + SL++ + DQ++M+ PE++F P +D
Sbjct: 680 LTWGFPYTIANLRQQSGRAGRRNKDSLSILLGGSFATDQHYMQNPEEIFSKPTAELQLDL 739
Query: 666 QNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEY 725
N V E H+ CAA E P+ YD KYFG L P + I +
Sbjct: 740 DNMLVREGHIQCAAFEMPIRPEYDTKYFGQDL----------------PEICEERLIADD 783
Query: 726 IG----HEKM---PSHTISIRAIESERYEVIDMQ--SNEVLEEIEESKAFFQVYEGAVYM 776
+G H++ PS +++R E E + VID+ N VLEE+E S+A F +Y+G +++
Sbjct: 784 MGYYHCHDRFRPKPSKYVALRDTEDEHFAVIDITHGRNVVLEELEASRATFTIYDGGIFL 843
Query: 777 HQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKD-QLTKTT 835
HQG TYLV++ + ++A ++ + + T RDYTDI + T+ +D +
Sbjct: 844 HQGQTYLVRDFSPDKRMAKVERVKVDWLTSQRDYTDI------DPVETEAIRDIGSSGIL 897
Query: 836 AQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQN-F 894
A + FGF+++ G + D V + P S+ +W+ +P+S ++ +
Sbjct: 898 AYHGTIKIFQKVFGFFKV-DSKGRVLDAVHVDNPPIIRYSKGMWLDIPKSALDILNSHRI 956
Query: 895 SFRSGLHAASHALLHVVPIYVRCNFSDLAPEC-------PNPHDSRYFPERILLYDRHPG 947
+ + +HAA H ++ ++P +V D+ EC R P R+ YD G
Sbjct: 957 NAAASIHAAQHCVMSLLPTFVISAPEDVRTECKVALKEFAKEETVRKRPGRLTFYDAKGG 1016
Query: 948 --GTGVSKQV 955
G+G+S +
Sbjct: 1017 ANGSGISTKA 1026
>gi|358365776|dbj|GAA82398.1| DEAD/DEAH box helicase [Aspergillus kawachii IFO 4308]
Length = 1203
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 280/767 (36%), Positives = 411/767 (53%), Gaps = 91/767 (11%)
Query: 205 EMVEHLRKGIGSQGQMVHVED--ISARKAVLVEIPDALLDNTKSALKST-GISKLYSHQA 261
E+VE +R+ Q+V + A+ ++ L N +AL +T I++ YSHQA
Sbjct: 314 EIVEEIRQMDWYTAQIVPEGHRVFDPQPAIYGDLTFPLSQNLVNALYNTKNITQFYSHQA 373
Query: 262 ESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALL 321
E+I AG +V+V+T TSSGKSL Y +P+L L H+ S+ LY+FPTKALAQDQ R++
Sbjct: 374 EAINHLHAGHHVIVSTSTSSGKSLIYQVPMLHELEHNPSTRGLYIFPTKALAQDQRRSMQ 433
Query: 322 AMTKAFDA--SIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSN 379
+ + D + +DGDT +R +RD AR++ TNPDMLH++ILP + L N
Sbjct: 434 ELLQFIDGLQGTLVETFDGDTPMSNRNLIRDEARIIFTNPDMLHITILPQEAAWRSFLQN 493
Query: 380 LRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSF 439
L+ FVV+DE H Y G FG H A I+RRL R+C+ V F
Sbjct: 494 LK-------------------FVVVDELHVYNGLFGTHVAFIMRRLRRICAAVGNHSVQF 534
Query: 440 VFSTATSANPREHCMEL--ANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDM 497
+ +AT ANP +H + + ++ LI +DGSP +K F+ WN T
Sbjct: 535 ISCSATVANPSQHMHAIFGVDPQSIHLIDSDGSPSGRKEFLCWN-------------TPY 581
Query: 498 DDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTR-EILEETAPHL 556
D + ++ + +SE + LF++++ G R IAFCR RKLCE++L R E+ P +
Sbjct: 582 KDPNDPSSGRADSVSETARLFSQLILRGARVIAFCRIRKLCEVLLQAVRTELAALDRPEI 641
Query: 557 VDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIAS 616
+ + YR GY +DRR IE+D F G+L G+ ATNALELG+D+G +D + LGFP SI++
Sbjct: 642 ANMVMGYRGGYSPQDRRNIEKDMFEGRLLGIVATNALELGVDIGSLDAVITLGFPYSISN 701
Query: 617 LWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLV 676
L QQ+GR+GRR + SL++ V DQ++M+ P++LF P ID N +LE HL
Sbjct: 702 LRQQSGRAGRRNKDSLSILVGDRYATDQHYMRNPDELFTKPNTELQIDLSNDLILEAHLQ 761
Query: 677 CAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSD---PSLDSSAKIFEYIGHEKM-- 731
CAA E PLS DE YFG L T L++R L D PSL Y H +
Sbjct: 762 CAAYEKPLSPAIDEVYFGPQLH---TLLESR--LLQDKYIPSL--------YHTHPRFLP 808
Query: 732 -PSHTISIRAIESERYEVIDMQS--NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELN 788
PS +I+IR E + + VID + N VLEE+E S+AFF +YEG +++HQG TYLV ELN
Sbjct: 809 NPSRSIAIRDTEDQHFAVIDTTNARNAVLEEVEASRAFFTIYEGGIFLHQGQTYLVHELN 868
Query: 789 LSSKIALCQKADLKYFTKTRDYTDI-----------------HVSGGNNAYATKISKDQL 831
S A + + Y T+ RDYTDI H + ++
Sbjct: 869 TSMYFARVSRVHVDYTTQQRDYTDIDPIETENIRLLSTPTPSHTTPSSSNSTPTPQPTNT 928
Query: 832 TKTTAQALACTVTTTWF----------GFYRLWRGSGIIFDTVEL-YLPKYSYESQAVWI 880
T TV+ +F GF+++ + G I D V + P ++ +WI
Sbjct: 929 NTNTNTNTTVTVSKAYFGSILIHAVVYGFFKIDK-RGRILDAVPVDNNPPIDIHTKGMWI 987
Query: 881 QVPQ-SVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPEC 926
+P +++ + +N + + +HAA HA+L ++P +V + D+ EC
Sbjct: 988 DIPPLALEILSSRNLNIAAAIHAAEHAILSLLPTFVVSSPGDVRTEC 1034
>gi|320581507|gb|EFW95727.1| Putative DNA helicase [Ogataea parapolymorpha DL-1]
Length = 1106
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 271/778 (34%), Positives = 413/778 (53%), Gaps = 73/778 (9%)
Query: 205 EMVEHLRKGIGSQGQMVH--VEDISARKAVLVEIPDALLDNTKSALKST-GISKLYSHQA 261
+++E L++ + Q+V + ++ R A E+ L + AL +T I K YSHQA
Sbjct: 239 QLIEKLKQTEFYEDQIVENGLLEVPPRGATYGELTFELSPVVREALAATKNIEKFYSHQA 298
Query: 262 ESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL- 320
E++ +V+++T TSSGKSL Y LPV+ AL D S +A+Y+FPTKALAQDQ R+L
Sbjct: 299 EALNHIHESHHVIISTSTSSGKSLVYQLPVITALEQDPSVTAMYIFPTKALAQDQRRSLK 358
Query: 321 -LAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSN 379
L F + + YDGDT ++DR +R +A ++ TNPDMLH SILP H + R L N
Sbjct: 359 DLLNVIPFLRDMVVETYDGDTEKRDREHVRSSASVIFTNPDMLHHSILPSHQLWRRFLVN 418
Query: 380 LRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSF 439
L+ +VV+DE H YKG FGCH AL++RRL R+C+ + ++ F
Sbjct: 419 LK-------------------YVVVDELHMYKGLFGCHFALVMRRLRRVCAMLGNNNLVF 459
Query: 440 VFSTATSANPREHCMELANLSTLEL--IQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDM 497
+ +AT P H ++ L + E+ I DGSP K V WNP
Sbjct: 460 ISCSATLKQPVRHMQDIFGLPSDEIVNIDQDGSPHGGKHIVAWNPPYI------------ 507
Query: 498 DDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETA-PHL 556
D R+ ISE + + EMV+ G R I FC RK+ EL++ R L + L
Sbjct: 508 -DARDPMAGRKPFISETARILIEMVKSGFRTIVFCVVRKVVELLMKEIRYQLTASGNAEL 566
Query: 557 VDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIAS 616
+ I YR GY DRR+IE F G L + +TNALELGID+G +D + GFP SIA+
Sbjct: 567 IGRIMSYRGGYSPADRRKIEDQMFRGNLKAIISTNALELGIDIGSLDAVVMCGFPISIAN 626
Query: 617 LWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLV 676
QQ+GR+GRR SL + V P+ QY+M++PE+ S +D +N VLE HL
Sbjct: 627 FHQQSGRAGRRNNDSLTLLVGGGDPVSQYYMRHPEEFVNSNYPDLALDFENVVVLEGHLQ 686
Query: 677 CAALEHPL-SLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHT 735
CAA E PL +++YFG+ Y + +++ + PS
Sbjct: 687 CAAFERPLDDSTIEKRYFGNPALVKQVCEARLEYDTESGMYHCNSRFMPW------PSSH 740
Query: 736 ISIRAIESERYEVIDMQS--NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKI 793
+SIRAIE + Y V+D+ + N V+EE+E S+ F +Y+G +++HQG +YLV+E N K
Sbjct: 741 VSIRAIEEDMYAVVDITNGRNVVIEEVEASRTSFTLYDGGIFIHQGLSYLVREFNPDEKY 800
Query: 794 ALCQKADLKYFTKTRDYTDIHVSGGNNAYATK----ISKDQLTKTTAQALACTVTTTWFG 849
A ++ ++ + T RD+T++ + Y + I+ + + L+ TV FG
Sbjct: 801 AKVERVNVDWSTAQRDFTNV------DPYEVERIRSINHSDVPIYFGKTLSTTVV---FG 851
Query: 850 FYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVP-QSVKAVVEQNFSFRSGLHAASHALL 908
F+++ R I+ D VE+ P S+ +WI +P ++++ + ++ + G+HAA HAL+
Sbjct: 852 FFKMDREKRIL-DAVEVNNPPVLIRSKGIWIDIPKKALELIRSKDLNAAGGIHAAQHALM 910
Query: 909 HVVPIYVRCNFSDLAPECPNPHDS-------RYFPERILLYDRHPG--GTGVSKQVTD 957
++P+Y+ ++ EC P R P R++ YD G G+G+S + D
Sbjct: 911 SILPLYILSGLDEIQTECKAPEKEFAKRETKRKRPARLIFYDNKGGQYGSGLSTKAFD 968
>gi|154272163|ref|XP_001536934.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150408921|gb|EDN04377.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 1160
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 274/761 (36%), Positives = 399/761 (52%), Gaps = 93/761 (12%)
Query: 229 RKAVLVEIPDALLDNTKSALKST-GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCY 287
+ AV ++ A+ + +AL +T GI++ YSHQAE+I G NV+V+T TSSGKSL Y
Sbjct: 326 QPAVYGDLTFAISQSLVNALYNTRGITQFYSHQAEAINNLHDGHNVIVSTSTSSGKSLIY 385
Query: 288 NLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDA--SIDIGVYDGDTTQKDR 345
+P+L L D S +Y+FPTKALAQDQ R+L + + + + +DGDT DR
Sbjct: 386 QVPMLHELEQDPRSRGMYIFPTKALAQDQRRSLKELLGYIEGLEHLLVETFDGDTPMADR 445
Query: 346 MWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVID 405
+R+ AR++ TNPDMLH++ILP + L NL+ +VV+D
Sbjct: 446 NVIREEARIIFTNPDMLHITILPQESSWRTFLKNLK-------------------YVVVD 486
Query: 406 EAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELI 465
E H Y G FG H A I+RRL R+C+ V F+ +AT ANP EH + + + L
Sbjct: 487 ELHVYNGLFGSHVAFIMRRLRRICAAVGNRHIRFISCSATVANPEEHMKTIFGIDDVRLT 546
Query: 466 QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHG 525
DGSP +K F+ WN T D + ++ + I E S LF +++ G
Sbjct: 547 DIDGSPSGRKEFICWN-------------TPFRDPGDPSSGRGNSIQESSRLFCQLILRG 593
Query: 526 LRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICV------YRAGYVAEDRRRIERDF 579
+R IAFCR RK CEL+L+ R+ L+ +D I V YR GY +DRR+IERD
Sbjct: 594 VRVIAFCRIRKQCELLLAAVRDELKS-----LDRINVSRFVMGYRGGYSPQDRRKIERDM 648
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFE 639
F GKL G+ ATNALELG+D+G +D + GFP SI++L QQ+GR+GRR + S+++ V
Sbjct: 649 FEGKLLGIVATNALELGVDIGSLDAVITHGFPYSISNLRQQSGRAGRRNKDSVSILVGDS 708
Query: 640 GPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSS 699
DQY+M+ P++LF P +D +N VLE H+ CAA E P+ D +YFG L
Sbjct: 709 YATDQYYMRNPDELFTKPNCELQVDLRNELVLEGHVQCAAFEMPIKPDEDTEYFGPQLHD 768
Query: 700 GITTLKNRGYLSSDPSLDSSAKIFEYIGHEKM---PSHTISIRAIESERYEVIDMQSNE- 755
T + L Y HE+ PS ++IR E+ Y +ID +N
Sbjct: 769 FACTRLTKDSLGF------------YHCHERFRPHPSKCVAIRVTENNHYAIIDTTNNRN 816
Query: 756 -VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIH 814
V+EEIEES+ F +YEG ++ HQGH Y+VKELN + A + + + T+ RD TDI
Sbjct: 817 AVIEEIEESRVIFSIYEGGIFFHQGHPYMVKELNTDKRFARVIRVHVDWTTQQRDITDID 876
Query: 815 VSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYE 874
+IS TK A+ + +G+++L + G I D V L P
Sbjct: 877 PI--ETEAIRRISSTANTKAFFGAI--KIRAIVYGYFKLDK-KGRILDAVALDNPPIEIL 931
Query: 875 SQAVWIQVPQSVKAVVE-QNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPEC------- 926
S+ +W+ VP+ +++ +N + + +HAA HA+L ++P Y+ + D+ EC
Sbjct: 932 SKGMWLDVPKKALDILKARNLNAAAAIHAAEHAILSLMPTYIISSPGDVRTECKVAVKEL 991
Query: 927 -----------------PNPHDSRYFPERILLYDRHPGGTG 950
P P +R P R+ YD G +G
Sbjct: 992 GPKHQQAMNQTRSQNVKPPPIPARQRPARLTFYDAKGGSSG 1032
>gi|225556229|gb|EEH04518.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
Length = 1198
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 276/761 (36%), Positives = 399/761 (52%), Gaps = 93/761 (12%)
Query: 229 RKAVLVEIPDALLDNTKSALKST-GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCY 287
+ AV ++ AL + +AL +T GI++ YSHQAE+I G NV+V+T TSSGKSL Y
Sbjct: 364 QPAVYGDLTFALSQSLVNALYNTRGITQFYSHQAEAINNLHDGHNVIVSTSTSSGKSLIY 423
Query: 288 NLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDA--SIDIGVYDGDTTQKDR 345
+P+L L D S +Y+FPTKALAQDQ R+L + + + + +DGDT DR
Sbjct: 424 QVPMLHELEQDPHSRGMYIFPTKALAQDQRRSLKELLGYIEGLEHLLVETFDGDTPMADR 483
Query: 346 MWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVID 405
+R+ AR++ TNPDMLH++ILP + L NL+ +VV+D
Sbjct: 484 NVIREEARIIFTNPDMLHITILPQESSWRTFLKNLK-------------------YVVVD 524
Query: 406 EAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELI 465
E H Y G FG H A I+RRL R+C+ V F+ +AT ANP EH + + + L
Sbjct: 525 ELHVYNGLFGSHVAFIMRRLRRICAAVGNRHVRFISCSATVANPEEHMKTIFGIDDVRLT 584
Query: 466 QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHG 525
DGSP +K F+ WN T D + ++ + I E S LF +++ G
Sbjct: 585 DIDGSPSGRKEFICWN-------------TPFRDPGDPSSGRGNSIQESSRLFCQLILRG 631
Query: 526 LRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICV------YRAGYVAEDRRRIERDF 579
+R IAFCR RK CEL+L+ R+ L+ +D I V YR GY +DRR+IERD
Sbjct: 632 VRVIAFCRIRKQCELLLAAVRDELKS-----LDRINVSRFVMGYRGGYSPQDRRKIERDM 686
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFE 639
F GKL G+ ATNALELG+D+G +D + GFP SI++L QQ+GR+GRR + S+++ V
Sbjct: 687 FEGKLLGIVATNALELGVDIGSLDAVITHGFPYSISNLRQQSGRAGRRNKDSVSILVGDS 746
Query: 640 GPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSS 699
DQY+M+ P++LF P +D +N VLE H+ CAA E P+ D +YFG L
Sbjct: 747 YATDQYYMQNPDELFTKPNCELQVDLRNELVLEGHVQCAAFEMPIKSDEDTEYFGPQLHE 806
Query: 700 GITTLKNRGYLSSDPSLDSSAKIFEYIGHEKM---PSHTISIRAIESERYEVIDMQSNE- 755
T + L Y HE+ PS ++IR E+ Y +ID +N
Sbjct: 807 FAYTRLTKDSLGF------------YHCHERFRPHPSKCVAIRDTENNHYAIIDTTNNRN 854
Query: 756 -VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIH 814
V+EEIEES+ F +YEG ++ HQGH Y+VKELN + A + + + T+ RD TDI
Sbjct: 855 AVIEEIEESRVIFSIYEGGIFFHQGHPYMVKELNTDKRFARVIRVHVDWTTQQRDITDID 914
Query: 815 VSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYE 874
+IS TK A+ + +G+++L + G I D V L P
Sbjct: 915 PI--ETEAIRRISSTANTKAFFGAI--KIRAIVYGYFKLDK-KGRILDAVALDNPPIEIL 969
Query: 875 SQAVWIQVP-QSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPEC------- 926
S+ +W+ VP Q++ + +N + + +HAA HA+L ++P Y+ + D+ EC
Sbjct: 970 SKGMWLDVPKQALDILKTRNLNAAAAIHAAEHAILSLMPTYIISSPGDVRTECKVAVKEL 1029
Query: 927 -----------------PNPHDSRYFPERILLYDRHPGGTG 950
P P +R P R+ YD G +G
Sbjct: 1030 GPKHQQAMNKTRSQNVKPPPIPARQRPARLTFYDAKGGSSG 1070
>gi|302692336|ref|XP_003035847.1| hypothetical protein SCHCODRAFT_105350 [Schizophyllum commune H4-8]
gi|300109543|gb|EFJ00945.1| hypothetical protein SCHCODRAFT_105350, partial [Schizophyllum
commune H4-8]
Length = 1093
Score = 441 bits (1134), Expect = e-120, Method: Compositional matrix adjust.
Identities = 287/775 (37%), Positives = 411/775 (53%), Gaps = 86/775 (11%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALK-STGISKLYSHQAES 263
E++ + K + QMV + RK+ + + L D AL S GIS Y HQA +
Sbjct: 261 ELLTEIEKEEWYKNQMVANKVFEPRKSRTAPLANPLPDALAHALSASRGISAFYIHQAAA 320
Query: 264 IMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQ---LRAL 320
I A AG+NV+V+T T+SGKS+ P L L D SS A++++PTKALAQDQ L+ L
Sbjct: 321 IDALDAGRNVIVSTSTASGKSV----PTLRCLLEDSSSRAIFVYPTKALAQDQKAALQQL 376
Query: 321 LAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNL 380
L + I + YDGDT Q+ R +R+ A ++ TN D LH SILP+ + L +L
Sbjct: 377 LGSCAGLE-HIQVDTYDGDTPQERRRQIRERASIIFTNFDTLHASILPHEELWRPFLQDL 435
Query: 381 RLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFV 440
++ A IDE H Y G FG H A ILRR RLC+ V + FV
Sbjct: 436 KIFA-------------------IDELHYYTGLFGSHVAYILRRFRRLCAAVGNNHVKFV 476
Query: 441 FSTATSANPREHCMELANL--STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMD 498
+AT +NPR+H + L S ++++ +DG+PC ++ FV+WNP +D
Sbjct: 477 SCSATISNPRQHMERITGLPPSDIDIVTDDGAPCGEREFVVWNPPP------------VD 524
Query: 499 DTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTR-EILEETAPHLV 557
+ A + SS I E + L +++ G+R I FC+ RK CEL + R ++ EE ++
Sbjct: 525 EDMPMAGRKSS-IGEATLLMRYLMKRGVRVILFCKIRKACELAMKTLRAQLSEEGRYDIL 583
Query: 558 DSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASL 617
D + YR GY EDRR IERD F G L G+ ATNALELG+D+G +D + LGFP S+AS
Sbjct: 584 DRVRSYRGGYSQEDRRAIERDAFSGHLLGIIATNALELGVDIGALDAVIMLGFPFSVASF 643
Query: 618 WQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVC 677
QQAGR+GRR R SLA+ V + PLDQ++M++PE+LF IE ID ++ VLE HL C
Sbjct: 644 RQQAGRAGRRSRDSLAILVGYGDPLDQHYMEHPEELFDGQIEDLVIDLESKVVLEAHLQC 703
Query: 678 AALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTIS 737
AA E PLS D+ YFG + + +R D + K Y P+ IS
Sbjct: 704 AAHEMPLS-ARDDVYFGPQM---LEICDSRLSKDDDGWYHTHPKFLPY------PAQFIS 753
Query: 738 IRAIESERYEVIDM---QSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIA 794
IR ++ E+Y +D+ + LEEIE S+A F++YEGAV++HQG T++V E++ +IA
Sbjct: 754 IRGMQEEKYLAVDVTKPDAPRTLEEIEISRALFEIYEGAVFIHQGMTFMVNEISHDDRIA 813
Query: 795 LCQKADLKYFTKTRDYTDI---------HVSGGNNAYATKISKDQLTKTTAQALACTVTT 845
KAD+ + T RDYTD+ V G AY ++ V T
Sbjct: 814 RLVKADVNWVTSPRDYTDVDAKQTYRIREVQGSYRAYYGRVE---------------VMT 858
Query: 846 TWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVE-QNFSFRSGLHAAS 904
FGF+++ S I DTV++ + +S W+ + Q V V+ +N +H+A
Sbjct: 859 KVFGFFKIRNNS--ILDTVDVDSEPWLRDSTGFWVDLSQRVLDVLRAKNIMVAEAIHSAQ 916
Query: 905 HALLHVVPIYVRCNFSDLAPECP--NPHDSRYFPERILLYDRHPGGTGVSKQVTD 957
HA L+ + APE + SR P R++ YD G GV+ + D
Sbjct: 917 HAFLNRFALAQEVRTECKAPEKEYMSRETSRKRPARLIFYDLPGKGGGVTSKAFD 971
>gi|303321131|ref|XP_003070560.1| DEAD box ATP-dependent RNA helicase, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|240110256|gb|EER28415.1| DEAD box ATP-dependent RNA helicase, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|320035982|gb|EFW17922.1| ATP-dependent RNA helicase [Coccidioides posadasii str. Silveira]
Length = 1150
Score = 441 bits (1133), Expect = e-120, Method: Compositional matrix adjust.
Identities = 269/740 (36%), Positives = 409/740 (55%), Gaps = 73/740 (9%)
Query: 205 EMVEHLRKGIGSQGQMVHVED--ISARKAVLVEIPDALLDNTKSALKST-GISKLYSHQA 261
E++ +R+ GQ+V A+ A+ E+ L N +AL +T GI+++YSHQA
Sbjct: 303 EIIAEIREQEWYTGQIVPNGHRVFDAQLAIYGELNFQLSQNVVNALYNTKGITQIYSHQA 362
Query: 262 ESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLR--- 318
E+I G +V+V+T TSSGKSL Y +P+L L D S +Y+FPTKALAQDQ R
Sbjct: 363 EAINNLHDGHDVIVSTSTSSGKSLIYQVPMLCELEKDSQSRGMYIFPTKALAQDQRRNME 422
Query: 319 ALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILS 378
L+ + + ++ + +DGDT + R +RD AR++ TNPDMLH++ILP + L
Sbjct: 423 ELMQYMEGLEYTM-VETFDGDTPMERRNAIRDEARIIFTNPDMLHITILPQESSWRTFLK 481
Query: 379 NLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPS 438
NL+L VV+DE H Y G FG H A I+RRL R+C+ +
Sbjct: 482 NLKL-------------------VVVDELHVYNGLFGSHVAYIMRRLRRICASLGNHSVR 522
Query: 439 FVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMD 498
FV +AT ANP +H + ++ ++L DGSP +K F+ WN T
Sbjct: 523 FVSCSATVANPEQHMKTIFGVNKVKLTDFDGSPAGRKEFICWN-------------TPFK 569
Query: 499 DTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVD 558
D + ++ + + E + LF +++ G+R IAFCR RK CE +LS R+ V
Sbjct: 570 DPGDPSSGRGNCLLESARLFCQLILRGVRVIAFCRIRKQCEFLLSAVRDEFRALDRSSVA 629
Query: 559 SICV-YRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASL 617
+ YR GY +DRR+IER+ F GKL G+ AT+ALELG+D+G +D + GFP SI++L
Sbjct: 630 KFVMGYRGGYSPQDRRQIEREMFEGKLLGIVATSALELGVDIGSLDAVISHGFPFSISNL 689
Query: 618 WQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVC 677
QQ+GR+GRR + SL++ V DQ++M+ P++LF P +D QN VLE HL C
Sbjct: 690 RQQSGRAGRRNKDSLSILVGDSYATDQHYMRNPDELFTKPNCELQVDLQNELVLEGHLQC 749
Query: 678 AALEHPLSLIYDEKYFGSGLSSGITT---LKNRGYLSSDPSLDSSAKIFEYIGHEKM--- 731
AA E P+ DE+YFG L+ +T N G+ Y HE+
Sbjct: 750 AAFEMPIHPEEDEQYFGPQLAQLASTRLVRDNMGF---------------YHCHERFRPQ 794
Query: 732 PSHTISIRAIESERYEVIDMQSNE--VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNL 789
P+ + IR +E E Y VID +N V+EE+E+ + FF +YEGA+++HQGHTYLVKELN
Sbjct: 795 PARCVQIRDVEQEHYAVIDTTNNRNAVIEEVEDRRVFFTLYEGAIFLHQGHTYLVKELNT 854
Query: 790 SSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQAL--ACTVTTTW 847
+ + A + + + T+ RD+TDI + T+ + K+ ++A A + T
Sbjct: 855 TLRFARVVRVQVDWTTRQRDFTDI------DPIETEAIRKISDKSNSRAFFGAIKIHTVV 908
Query: 848 FGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVP-QSVKAVVEQNFSFRSGLHAASHA 906
+G++++ + G I D V L P S+ +W+ VP Q+++ + N + + +HAA HA
Sbjct: 909 YGYFKVDK-KGRILDAVALDNPPIDIFSKGLWLDVPKQALEILASHNLNAAAAIHAAEHA 967
Query: 907 LLHVVPIYVRCNFSDLAPEC 926
++ ++P +V + D+ EC
Sbjct: 968 VMSLLPTFVISSPGDIRTEC 987
>gi|390598302|gb|EIN07700.1| P-loop containing nucleoside triphosphate hydrolase protein
[Punctularia strigosozonata HHB-11173 SS5]
Length = 1098
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 268/724 (37%), Positives = 396/724 (54%), Gaps = 73/724 (10%)
Query: 250 STGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPT 309
S I+ LY+HQA++I A K+V+V+T T+SGKS+ Y +P L L D ++A++++PT
Sbjct: 342 SRNITSLYTHQADAINALAQKKHVIVSTSTASGKSVIYQVPTLRFLEEDPDATAIFVYPT 401
Query: 310 KALAQDQLRALLAMTKAFDA--SIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSIL 367
KALAQDQ AL + A + + YDGDT+Q+ R W+R++A ++ TN DMLH SIL
Sbjct: 402 KALAQDQRAALEQLLVACPGLEHVQVATYDGDTSQEQRRWVREHASVIFTNFDMLHTSIL 461
Query: 368 PYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCR 427
P+ + R L NL+L+A +DE H Y FG H A+I+RRL R
Sbjct: 462 PHEEMWRRFLKNLKLVA-------------------VDELHYYSALFGSHVAMIIRRLRR 502
Query: 428 LCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLR 487
+C+ V FV +AT P H + + +E I DG+P +K F++W+P
Sbjct: 503 ICAAVGNRWTLFVSCSATITKPGVHMRNMFGIEEVEEITEDGAPSGKKDFIIWDPPPI-- 560
Query: 488 SVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTR- 546
D+ + S ++E + L +++ G+R I FC+ RK+CEL + R
Sbjct: 561 -----------DSMDPTLGKRSVLTEATGLMRYLMKRGIRVILFCKIRKMCELAMKTIRT 609
Query: 547 EILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTL 606
E+ E ++D + YR GY DRR+IER+ F GKL G+ ATNALELG+D+G +D +
Sbjct: 610 ELSAEGRLDVLDRVMSYRGGYSPHDRRKIEREAFSGKLLGIVATNALELGVDIGVLDCVI 669
Query: 607 HLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQ 666
LGFP S+AS QQAGR+GRR R SLAV VA P+DQ+++ P+ LF P ID
Sbjct: 670 MLGFPLSLASFRQQAGRAGRRARDSLAVLVAEAYPVDQHYVNNPDDLFNKPTGELLIDLD 729
Query: 667 NHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYI 726
+ +LE HL CA+ E PL+L D KYFG L++ + + R D K +
Sbjct: 730 SKVILEAHLQCASYEMPLTL-EDSKYFGP-LTAAVC--EERLEKDKDGWYHPHPKFLPF- 784
Query: 727 GHEKMPSHTISIRAIESERYEVIDM--QSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLV 784
PSH I+IR E E+Y V+D+ + +LEE+E S+A F++YEGAV+MHQGHT+LV
Sbjct: 785 ----PPSH-IAIRGAEEEKYAVVDVTKSTARILEEVELSRALFEIYEGAVFMHQGHTFLV 839
Query: 785 KELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQ---ALAC 841
KE++ SK+A +AD+ + T+ RD+T+I A K + + K + Q
Sbjct: 840 KEVSHDSKLAKLVRADVNWVTEPRDFTNID--------AVKTYRIREIKNSPQFGYYGRV 891
Query: 842 TVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQ-SVKAVVEQNFSFRSGL 900
+ T FG++++ R II D V+L P + E+ +WI V + +V + + +
Sbjct: 892 ELKTIVFGYFKM-RNRTII-DAVDLDTPPWERETTGMWIDVDKAAVDLMRMKGIHPAEAI 949
Query: 901 HAASHALLHVVPIYVRCNFSDLAPECPNP-------HDSRYFPERILLYDRHPGGTGVSK 953
HAA HA L+ + SDL EC P SR P R++ YD G++
Sbjct: 950 HAAQHAFLNRFAMG-----SDLRTECKVPEKEYKARESSRKRPARLIFYDPAGKNGGIAA 1004
Query: 954 QVTD 957
+ D
Sbjct: 1005 KAFD 1008
>gi|346970245|gb|EGY13697.1| Hrq1p [Verticillium dahliae VdLs.17]
Length = 1174
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 267/774 (34%), Positives = 420/774 (54%), Gaps = 77/774 (9%)
Query: 205 EMVEHLRKGIGSQGQMVHVED--ISARKAVLVEIPDALL--DNTKSALKSTGISKLYSHQ 260
E+V+ L++ GQ+V ++AV ++ D LL D + + GI++ ++HQ
Sbjct: 333 EIVDELKESPWYTGQIVPDGHRVFEPQEAVYGDL-DFLLSQDLVNALFNAKGITQFFAHQ 391
Query: 261 AESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL 320
AE++ G++VVVAT TSSGKSL Y LP++ AL D+++ A+++FPTKALAQDQ R+L
Sbjct: 392 AEALNGLHNGQHVVVATSTSSGKSLIYQLPLVHALEQDMNTRAMFIFPTKALAQDQKRSL 451
Query: 321 LAMTKAFDASIDIGV--YDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILS 378
+ ++ V +DGDT +R +RD AR++ TNPDMLH++ILP ++ L
Sbjct: 452 KELISYMPGMEEVVVETFDGDTPMTERNMIRDEARIIFTNPDMLHITILPQEERWRTFLK 511
Query: 379 NLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPS 438
NL+ +VV+DE H Y G G H + I+RRL R+C+ V
Sbjct: 512 NLK-------------------YVVVDELHYYNGQMGSHMSFIMRRLRRICAAVGNRHIK 552
Query: 439 FVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMD 498
F+ +AT ANP+EH + + + L+ DGSP +K F+ WN T
Sbjct: 553 FISCSATVANPQEHFKTVFGIENVRLVDFDGSPSGRKEFLCWN-------------TPYR 599
Query: 499 DTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCE-LVLSYTREILEETAPHLV 557
D + A+ ++E + L+ ++V G+R IAFCR R+ CE LV + E+ +
Sbjct: 600 DPGDPASGRGDALAECARLYCQLVLRGVRIIAFCRVREQCEKLVNAVKSEMDSLGRQECM 659
Query: 558 DSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASL 617
+ YR GY +DRR+IE + F GKL GV AT+ALELGID+G +D L GFP +IA+L
Sbjct: 660 GRVMGYRGGYTPQDRRQIESEMFEGKLLGVVATSALELGIDIGSLDCVLTWGFPYTIANL 719
Query: 618 WQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVC 677
QQ+GR+GRR + SL++ V P DQ++M+ P++LF P +D +N V E H+ C
Sbjct: 720 RQQSGRAGRRNKDSLSILVGDCFPTDQHYMQNPDELFTKPNSALQVDLENMLVREGHIQC 779
Query: 678 AALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKM---PSH 734
AA E P+ + D +YFGS L+ + R L ++ Y HE+ P+
Sbjct: 780 AAYEMPIKPVEDAQYFGSDLAK---VCQERLIL---------GELGFYHCHERFRPQPAK 827
Query: 735 TISIRAIESERYEVIDMQ--SNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSK 792
++IR E E + +ID+ N VLEE+E S+AFF +Y+GA+++HQG YLV++ +
Sbjct: 828 FVAIRDTEDEHFAIIDVTHGKNLVLEELEASRAFFTLYDGAIFLHQGSKYLVRDFDPDRH 887
Query: 793 IALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTW--FGF 850
+A +K ++++ TK RDYTD + T+ K ++ + ++A T+ FGF
Sbjct: 888 MARVEKVNVEWITKQRDYTD------TDPIETEAIK-RINGSLSKAFYGTIKIQQNVFGF 940
Query: 851 YRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVV-EQNFSFRSGLHAASHALLH 909
++L + +I D V + P + +W+ +P+ ++ E+ + +HAA HA+L
Sbjct: 941 FKLDKKKRVI-DAVHVSNPPVIRYGKGMWLDIPKKALLILTERRLHIAASIHAAEHAILS 999
Query: 910 VVPIYVRCNFSDLAPEC-------PNPHDSRYFPERILLYDRHPG--GTGVSKQ 954
++P +V D+ EC R P R+ YD G G+G+S +
Sbjct: 1000 LMPNFVISMPGDVRTECKVALKEFAQKESQRKRPARLTFYDAKGGASGSGISTK 1053
>gi|346325081|gb|EGX94678.1| DEAD/DEAH box helicase, putative [Cordyceps militaris CM01]
Length = 1147
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 260/728 (35%), Positives = 389/728 (53%), Gaps = 78/728 (10%)
Query: 250 STGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPT 309
+ GI+ Y+HQAE++ A GKNVVVAT TSSGKSL Y LPVL AL D S A+Y+FPT
Sbjct: 355 AKGIASFYAHQAEALNALHEGKNVVVATSTSSGKSLIYQLPVLYALEQDFESRAMYIFPT 414
Query: 310 KALAQDQLRAL---LAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSI 366
KALAQDQ R+L +A + ++ + +DGDT R +R+ AR++ TNPDMLH++I
Sbjct: 415 KALAQDQRRSLKDMMAYMPGLEGTV-VETFDGDTPFTARNAIREQARIIFTNPDMLHVTI 473
Query: 367 LPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLC 426
LP ++ L NL+ +VV+DE H Y G G H A I+RRL
Sbjct: 474 LPQEEKWRSFLKNLQ-------------------YVVVDELHYYNGQLGSHVAFIMRRLR 514
Query: 427 RLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCL 486
R+C+ + F+ +AT ANP EH + + ++LI DGSP +K F+ WN
Sbjct: 515 RICAAIGNRSVQFISCSATVANPTEHFKAIFGIDNVKLIDFDGSPSGRKEFLCWN----- 569
Query: 487 RSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTR 546
T D + A+ S E + LF E++ G+R IAFCR R CE++++ R
Sbjct: 570 --------TPYKDPGDPASGRGSAKFECARLFCELLLRGVRIIAFCRVRNQCEVLVNAIR 621
Query: 547 EILEETA-PHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVT 605
+ LE V+ + YR GY AEDRR+IE + F G+L G+ +T ALELGID+G +D
Sbjct: 622 QELENRGRGDCVNLVMGYRGGYTAEDRRKIESEMFAGRLLGIVSTTALELGIDIGTLDCV 681
Query: 606 LHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDA 665
L GFP +IA+L QQ+GR+GRR + SL++ + P DQ++M+ PE+LF P +D
Sbjct: 682 LTWGFPYTIANLRQQSGRAGRRNKDSLSILLGDCFPTDQHYMQNPEELFSKPTAELRLDL 741
Query: 666 QNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGIT---TLKNRGYLSSDPSLDSSAKI 722
N V E H+ CAA E P+ YD KYFG L+ + GY
Sbjct: 742 DNMLVREGHIQCAAFEMPIRPEYDTKYFGRDLAQICEERLVADDMGY------------- 788
Query: 723 FEYIGHEKM---PSHTISIRAIESERYEVIDMQ--SNEVLEEIEESKAFFQVYEGAVYMH 777
Y H++ PS ++IR E E + VID+ N VLEE+E S+A F +Y+G +++H
Sbjct: 789 --YHCHDRFRPKPSKFVAIRDTEDEHFAVIDITHGRNVVLEELEASRATFTIYDGGIFLH 846
Query: 778 QGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKD-QLTKTTA 836
QG TYLV++ ++A ++ + + T RDYT+I + T+ +D + T A
Sbjct: 847 QGRTYLVRDFLPDRRMAKVERVKVDWLTSQRDYTNI------DPVETEAIRDIGSSGTLA 900
Query: 837 QALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVE-QNFS 895
+ FGF+++ G + D V++ ++ +W+ +P+S ++ +
Sbjct: 901 YHGTIKILQKVFGFFKI-DSKGRVLDAVQVDNRPIIRYTKGMWLDIPKSALDILNSHGIN 959
Query: 896 FRSGLHAASHALLHVVPIYVRCNFSDLAPEC-------PNPHDSRYFPERILLYDRHPG- 947
+ +HAA H ++ ++P +V D+ EC +R P R+ YD G
Sbjct: 960 AAASIHAAQHCVMSLLPTFVISAPEDVRTECKVALKEFATEETARKRPGRLTFYDAKGGA 1019
Query: 948 -GTGVSKQ 954
G+G+S +
Sbjct: 1020 HGSGISTK 1027
>gi|119180054|ref|XP_001241534.1| hypothetical protein CIMG_08697 [Coccidioides immitis RS]
gi|392866587|gb|EAS27783.2| DEAD/DEAH box helicase [Coccidioides immitis RS]
Length = 1150
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 270/742 (36%), Positives = 410/742 (55%), Gaps = 77/742 (10%)
Query: 205 EMVEHLRKGIGSQGQMV----HVEDISARKAVLVEIPDALLDNTKSALKST-GISKLYSH 259
E++ +R+ GQ+V V D A+ + E+ L N +AL +T GI+++YSH
Sbjct: 303 EIIAEIREQEWYAGQIVPNGHRVFD--AQLPIYGELNFQLSQNVVNALYNTKGITQIYSH 360
Query: 260 QAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLR- 318
QAE+I G +V+V+T TSSGKSL Y +P+L L D S +Y+FPTKALAQDQ R
Sbjct: 361 QAEAINNLHDGHDVIVSTSTSSGKSLIYQVPMLCELEKDSQSRGMYIFPTKALAQDQRRN 420
Query: 319 --ALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRI 376
L+ + + ++ + +DGDT + R +RD AR++ TNPDMLH++ILP +
Sbjct: 421 MEELMQYMEGLEYTM-VETFDGDTPMERRNAIRDEARIIFTNPDMLHITILPQESSWRTF 479
Query: 377 LSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSD 436
L NL+L VV+DE H Y G FG H A I+RRL R+C+ +
Sbjct: 480 LKNLKL-------------------VVVDELHVYNGLFGSHVAYIMRRLRRICASLGNHS 520
Query: 437 PSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTD 496
FV +AT ANP +H + ++ ++L DGSP +K F+ WN T
Sbjct: 521 VRFVSCSATVANPEQHMKTIFGVNKVKLTDFDGSPAGRKEFICWN-------------TP 567
Query: 497 MDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHL 556
D + ++ + + E + LF +++ G+R IAFCR RK CE +LS R+
Sbjct: 568 FKDPGDPSSGRGNCLLESARLFCQLILRGVRVIAFCRIRKQCEFLLSAVRDEFRALDRSS 627
Query: 557 VDSICV-YRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIA 615
V + YR GY +DRR+IER+ F GKL G+ AT+ALELG+D+G +D + GFP SI+
Sbjct: 628 VAKFVMGYRGGYSPQDRRQIEREMFEGKLLGIVATSALELGVDIGSLDAVISHGFPFSIS 687
Query: 616 SLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHL 675
+L QQ+GR+GRR + SL++ V DQ++M+ P++LF P +D QN VLE HL
Sbjct: 688 NLRQQSGRAGRRNKDSLSILVGDSYATDQHYMRNPDELFTKPNCELQVDLQNELVLEGHL 747
Query: 676 VCAALEHPLSLIYDEKYFGSGLSSGITT---LKNRGYLSSDPSLDSSAKIFEYIGHEKM- 731
CAA E P+ DE+YFG L+ +T N G+ Y HE+
Sbjct: 748 QCAAFEMPIHPEEDEQYFGPQLAQLASTRLVRDNMGF---------------YHCHERFR 792
Query: 732 --PSHTISIRAIESERYEVIDMQSNE--VLEEIEESKAFFQVYEGAVYMHQGHTYLVKEL 787
P+ + IR +E E Y VID +N V+EE+E+ + FF +YEGA+++HQGHTYLVKEL
Sbjct: 793 PQPARCVQIRDVEQEHYAVIDTTNNRNAVIEEVEDRRVFFTLYEGAIFLHQGHTYLVKEL 852
Query: 788 NLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQAL--ACTVTT 845
N + + A + + + T+ RD+TDI + T+ + K+ ++A A + T
Sbjct: 853 NTTLRFARVVRVQVDWTTRQRDFTDI------DPIETEAIRKISDKSNSRAFFGAIKIHT 906
Query: 846 TWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVP-QSVKAVVEQNFSFRSGLHAAS 904
+G++++ + G I D V L P S+ +W+ VP Q+++ + N + + +HAA
Sbjct: 907 VVYGYFKVDK-KGRILDAVALDNPPIDIFSKGLWLDVPKQALEILASHNLNAAAAIHAAE 965
Query: 905 HALLHVVPIYVRCNFSDLAPEC 926
HA++ ++P +V + D+ EC
Sbjct: 966 HAVMSLLPTFVISSPGDIRTEC 987
>gi|380493895|emb|CCF33550.1| DEAD/DEAH box helicase [Colletotrichum higginsianum]
Length = 1174
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 253/723 (34%), Positives = 397/723 (54%), Gaps = 68/723 (9%)
Query: 250 STGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPT 309
S GI++ ++HQ E+I L G++VVV+T TSSGKSL Y LPV+ AL D ++ A+Y+FPT
Sbjct: 379 SKGITQFFAHQTEAINGLLEGQHVVVSTSTSSGKSLIYQLPVIHALEKDRNTRAMYIFPT 438
Query: 310 KALAQDQLRALLAMTKAFDASIDIGV--YDGDTTQKDRMWLRDNARLLITNPDMLHMSIL 367
KALAQDQ R+L + ++ V +DGDT +R +R+ AR++ TNPDMLH++IL
Sbjct: 439 KALAQDQKRSLRELMSYMPGMEEVLVETFDGDTPMNERNVIREEARIIFTNPDMLHVTIL 498
Query: 368 PYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCR 427
P ++ L NL+ +VV+DE H Y G G H A I+RRL R
Sbjct: 499 PQEERWRTFLKNLK-------------------YVVVDELHYYNGQMGSHVAFIMRRLRR 539
Query: 428 LCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLR 487
+C+ V FV +AT ANPR+H + + + L+ DGSP +K F+ WN
Sbjct: 540 ICAAVGNRHIKFVSCSATVANPRQHFETIFGIGNVRLVDFDGSPSGRKEFLCWN------ 593
Query: 488 SVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTRE 547
T D + A+ +SE + LF +++ G+R IAF R R+ CE +++ ++
Sbjct: 594 -------TPYKDPGDPASGRGDALSECARLFCQLMLRGVRIIAFTRVREQCEKLVTAVQQ 646
Query: 548 ILEETA-PHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTL 606
LE P V+ + YR GY A+DRRRIE + F GKL G+ AT ALELGID+G +D L
Sbjct: 647 ELESLGRPECVNRVMGYRGGYTAQDRRRIESEMFEGKLLGIVATTALELGIDIGTLDCVL 706
Query: 607 HLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQ 666
GFP +IA+L QQ+GR+GRR + SLA+ V P DQ++M+ P++LF P +D +
Sbjct: 707 TWGFPYTIANLRQQSGRAGRRNKDSLAILVGDCFPTDQHYMQNPDELFSKPNSELQVDLE 766
Query: 667 NHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYI 726
N V E H+ CAA E P+ I D +YFG L+ + + L+ + Y
Sbjct: 767 NMLVREGHIQCAAYEMPVRPIEDAEYFGKDLAQ----------ICVERLLEDALGF--YH 814
Query: 727 GHEK---MPSHTISIRAIESERYEVIDMQ--SNEVLEEIEESKAFFQVYEGAVYMHQGHT 781
H++ +PS ++IR E + + +ID+ NEVLEE+E S+A F +Y+GA+++HQG+
Sbjct: 815 CHDRFRPIPSRFVAIRDTEDDHFAIIDITHGRNEVLEELEASRATFTIYDGAIFLHQGNK 874
Query: 782 YLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALAC 841
YLV++ +A ++ +++ T RD+TDI + I K +++ A
Sbjct: 875 YLVRDFQPDRMMARVERVKVEWTTTQRDFTDI-----DPIETEAIKKISGSQSRAFYGTI 929
Query: 842 TVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVP-QSVKAVVEQNFSFRSGL 900
+ +GF+++ + ++ D V + P + +W+ +P ++++ + ++ + +
Sbjct: 930 KIQQNVYGFFKVDKRKRVL-DAVHVDNPPVIRYGKGMWLDIPKKALQILADRRLHIAASI 988
Query: 901 HAASHALLHVVPIYVRCNFSDLAPEC-------PNPHDSRYFPERILLYDRHPG--GTGV 951
HAA HA+L ++P +V D+ EC R P R+ YD G G+G+
Sbjct: 989 HAAEHAILSLMPNFVISLPGDVRTECKVALKEFAKKESQRKRPGRLTFYDAKGGASGSGI 1048
Query: 952 SKQ 954
S +
Sbjct: 1049 STK 1051
>gi|302882371|ref|XP_003040096.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256720963|gb|EEU34383.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 1665
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 255/730 (34%), Positives = 393/730 (53%), Gaps = 76/730 (10%)
Query: 250 STGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPT 309
+ GI+K Y+HQ+E++ + G++VVV+T TSSGKSL Y LPVL AL D +S A+Y+FPT
Sbjct: 857 AKGITKFYAHQSEALNSLHDGQHVVVSTSTSSGKSLIYQLPVLYALEQDYNSRAMYIFPT 916
Query: 310 KALAQDQLRALLAMTKAFDA--SIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSIL 367
KALAQDQ R+L M + +DGDT DR +R+ AR++ TNPDMLH++IL
Sbjct: 917 KALAQDQKRSLKEMMGYMPGLEETMVETFDGDTPMTDRNMIREQARIIFTNPDMLHITIL 976
Query: 368 PYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCR 427
P ++ L NL+ +VV+DE H Y G G H + I+RRL R
Sbjct: 977 PQEERWRSFLKNLK-------------------YVVVDELHYYNGQMGSHMSFIMRRLRR 1017
Query: 428 LCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLR 487
+C+ V F+ +AT ANP +H + + + LI DGSP +K F+ WN
Sbjct: 1018 ICAAVGNRRVKFISCSATVANPEQHFKTIFGIDNVRLIDFDGSPSGRKEFLCWN------ 1071
Query: 488 SVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTRE 547
T D + A+ S E + LF ++ G+R IAFCR R CE+++S ++
Sbjct: 1072 -------TPYKDPGDPASGRGSAKFECARLFCALMLRGVRIIAFCRVRAQCEVLVSAIKQ 1124
Query: 548 ILEETA-PHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTL 606
LE P ++ + YR GY A+DRRRIE + F G+L G+ AT ALELGID+G +D +
Sbjct: 1125 ELEALGRPECINLVMGYRGGYTAQDRRRIETEMFQGQLLGIVATTALELGIDIGSLDCVM 1184
Query: 607 HLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQ 666
GFP +IA+L QQ+GR+GRR + SL++ V DQ++M+ P++LF P +D +
Sbjct: 1185 TWGFPYTIANLRQQSGRAGRRNKDSLSILVGDGFATDQHYMQNPDELFTKPNCELQVDLE 1244
Query: 667 NHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYI 726
N V E H+ CAA E P+ D+KYFG L P + + + +
Sbjct: 1245 NMLVREGHIQCAAYEMPIRPNEDKKYFGKDL----------------PKICDERLLRDEM 1288
Query: 727 G----HEK---MPSHTISIRAIESERYEVIDMQS--NEVLEEIEESKAFFQVYEGAVYMH 777
G H++ +P+ ++IR E E + +ID+ + N VLEE+E S+A F +Y+GA+++H
Sbjct: 1289 GFYHCHDRFRPIPAKYVAIRDTEDEHFAIIDITNGRNVVLEELEASRATFTIYDGAIFLH 1348
Query: 778 QGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQ 837
QG+ YLV++ ++A ++ + + T RDYTDI + I +++ A
Sbjct: 1349 QGNPYLVRDFLPDKRMAKVERVKVDWTTVQRDYTDI-----DPTETEAIRTIPGSRSHAY 1403
Query: 838 ALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVE-QNFSF 896
+ FGF+++ R G + D V++ P S+ +W+ VP+ +++ +
Sbjct: 1404 YGTIKIQQNVFGFFKVDR-KGRVLDAVQVDNPPVIRFSKGMWLDVPKKAIDILQTRRLHV 1462
Query: 897 RSGLHAASHALLHVVPIYVRCNFSDLAPEC-------PNPHDSRYFPERILLYDRH--PG 947
+G+HAA HA++ ++P +V D+ EC R P R+ YD G
Sbjct: 1463 AAGIHAAEHAIMSLLPTFVVSMPGDVRTECKIAKKEFAKQETQRKRPARLTFYDAKGGAG 1522
Query: 948 GTGVSKQVTD 957
G+G+S + D
Sbjct: 1523 GSGISTKAFD 1532
>gi|325095277|gb|EGC48587.1| conserved hypothetical protein [Ajellomyces capsulatus H88]
Length = 1198
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 276/761 (36%), Positives = 399/761 (52%), Gaps = 93/761 (12%)
Query: 229 RKAVLVEIPDALLDNTKSALKST-GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCY 287
+ AV ++ AL + +AL +T GI++ YSHQAE+I G NV+V+T TSSGKSL Y
Sbjct: 364 QPAVYGDLTFALSQSLVNALYNTRGITQFYSHQAEAINNLHDGHNVIVSTSTSSGKSLIY 423
Query: 288 NLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDA--SIDIGVYDGDTTQKDR 345
+P+L L D S +Y+FPTKALAQDQ R+L + + + + +DGDT DR
Sbjct: 424 QVPMLHELEQDPHSRGMYIFPTKALAQDQRRSLKELLGYIEGLEHLLVETFDGDTPMADR 483
Query: 346 MWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVID 405
+R+ AR++ TNPDMLH++ILP + L NL+ +VV+D
Sbjct: 484 NVIREEARIIFTNPDMLHITILPQESSWRTFLKNLK-------------------YVVVD 524
Query: 406 EAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELI 465
E H Y G FG H A I+RRL R+C+ V F+ +AT ANP EH + + + L
Sbjct: 525 ELHVYNGLFGSHVAFIMRRLRRICAAVGNRHVKFISCSATVANPEEHMKTIFGIDDVRLT 584
Query: 466 QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHG 525
DGSP +K F+ WN T D + ++ + I E S LF +++ G
Sbjct: 585 DIDGSPSGRKEFICWN-------------TPFRDPGDPSSGRGNSIQESSRLFCQLILRG 631
Query: 526 LRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICV------YRAGYVAEDRRRIERDF 579
+R IAFCR RK CEL+L+ R+ L+ +D I V YR GY +DRR+IERD
Sbjct: 632 VRVIAFCRIRKQCELLLAAVRDELKS-----LDRINVSRFVMGYRGGYSPQDRRKIERDM 686
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFE 639
F GKL G+ ATNALELG+D+G +D + GFP SI++L QQ+GR+GRR + S+++ V
Sbjct: 687 FEGKLLGIVATNALELGVDIGSLDAVITHGFPYSISNLRQQSGRAGRRNKDSVSILVGDS 746
Query: 640 GPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSS 699
DQY+M+ P++LF P +D +N VLE H+ CAA E P+ D +YFG L
Sbjct: 747 YATDQYYMRNPDELFTKPNCELQVDLRNELVLEGHVQCAAFEMPIKPDEDTEYFGPQLHE 806
Query: 700 GITTLKNRGYLSSDPSLDSSAKIFEYIGHEKM---PSHTISIRAIESERYEVIDMQSNE- 755
T + L Y HE+ PS ++IR E+ Y +ID +N
Sbjct: 807 FAYTRLTKDSLGF------------YHCHERFRPHPSKCVAIRDTENNHYAIIDTTNNRN 854
Query: 756 -VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIH 814
V+EEIEES+ F +YEG ++ HQGH Y+VKELN + A + + + T+ RD TDI
Sbjct: 855 AVIEEIEESRVIFSIYEGGIFFHQGHPYMVKELNTDKRFARVIRVHVDWTTQQRDITDID 914
Query: 815 VSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYE 874
+IS TK A+ + +G+++L + G I D V L P
Sbjct: 915 PI--ETEAIRRISSTANTKAFFGAI--KIRAIVYGYFKLDK-KGRILDAVALDNPPIEIL 969
Query: 875 SQAVWIQVP-QSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPEC------- 926
S+ +W+ VP Q++ + +N + + +HAA HA+L ++P Y+ + D+ EC
Sbjct: 970 SKGMWLDVPKQALDILKTRNLNAAAAIHAAEHAILSLMPTYIISSPGDVRTECKVAVKEL 1029
Query: 927 -PN----------------PHDSRYFPERILLYDRHPGGTG 950
P P +R P R+ YD G +G
Sbjct: 1030 GPKHQQAMNQTRSQNVKLPPVPARQRPARLTFYDAKGGSSG 1070
>gi|240276689|gb|EER40200.1| DEAD/DEAH box helicase [Ajellomyces capsulatus H143]
Length = 1198
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 275/761 (36%), Positives = 398/761 (52%), Gaps = 93/761 (12%)
Query: 229 RKAVLVEIPDALLDNTKSALKST-GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCY 287
+ AV ++ AL + +AL +T GI++ YSHQAE+I G NV+V+T TSSGKSL Y
Sbjct: 364 QPAVYGDLTFALSQSLVNALYNTRGITQFYSHQAEAINNLHDGHNVIVSTSTSSGKSLIY 423
Query: 288 NLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDA--SIDIGVYDGDTTQKDR 345
+P+L L D S +Y+FPTKALAQDQ R+L + + + + +DGDT DR
Sbjct: 424 QVPMLHELEQDPHSRGMYIFPTKALAQDQRRSLKELLGYIEGLEHLLVETFDGDTPMADR 483
Query: 346 MWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVID 405
+R+ AR++ TNPDMLH++ILP + L NL+ +VV+D
Sbjct: 484 NVIREEARIIFTNPDMLHITILPQESSWRTFLKNLK-------------------YVVVD 524
Query: 406 EAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELI 465
E H Y G FG H A I+RRL R+C+ V F+ +AT ANP EH + + + L
Sbjct: 525 ELHVYNGLFGSHVAFIMRRLRRICAAVGNRHVKFISCSATVANPEEHMKTIFGIDDVRLT 584
Query: 466 QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHG 525
DGSP +K F+ WN T D + ++ + I E S LF +++ G
Sbjct: 585 DIDGSPSGRKEFICWN-------------TPFRDPGDPSSGRGNSIQESSRLFCQLILRG 631
Query: 526 LRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICV------YRAGYVAEDRRRIERDF 579
+R IAFCR RK CEL+L+ R+ L+ +D I V YR GY +DRR+IERD
Sbjct: 632 VRVIAFCRIRKQCELLLAAVRDELKS-----LDRINVSRFVMGYRGGYSPQDRRKIERDM 686
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFE 639
F GKL G+ ATNALELG+D+G +D + GFP SI++L QQ+GR+GRR + S+++ V
Sbjct: 687 FEGKLLGIVATNALELGVDIGSLDAVITHGFPYSISNLRQQSGRAGRRNKDSVSILVGDS 746
Query: 640 GPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSS 699
DQY+M+ P++LF P +D +N VLE H+ CAA E P+ D +YFG L
Sbjct: 747 YATDQYYMRNPDELFTKPNCELQVDLRNELVLEGHVQCAAFEMPIKPDEDTEYFGPQLHE 806
Query: 700 GITTLKNRGYLSSDPSLDSSAKIFEYIGHEKM---PSHTISIRAIESERYEVIDMQSNE- 755
T + L Y HE+ PS ++IR E+ Y +ID +N
Sbjct: 807 FAYTRLTKDSLGF------------YHCHERFRPHPSKCVAIRDTENNHYAIIDTTNNRN 854
Query: 756 -VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIH 814
V+EEIEES+ F +YEG ++ HQGH Y+VKELN + A + + + T+ RD TDI
Sbjct: 855 AVIEEIEESRVIFSIYEGGIFFHQGHPYMVKELNTDKRFARVIRVHVDWTTQQRDITDID 914
Query: 815 VSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYE 874
+IS TK A+ + +G+++L + G I D V L P
Sbjct: 915 PI--ETEAIRRISSTANTKAFFGAI--KIRAIVYGYFKLDK-KGRILDAVALDNPPIEIL 969
Query: 875 SQAVWIQVP-QSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECP------ 927
S+ +W+ VP Q++ + +N + + +HAA HA+L ++P Y+ + D+ EC
Sbjct: 970 SKGMWLDVPKQALDILKTRNLNAAAAIHAAEHAILSLMPTYIISSPGDVRTECKVAVKEL 1029
Query: 928 ------------------NPHDSRYFPERILLYDRHPGGTG 950
P +R P R+ YD G +G
Sbjct: 1030 GPKHQQAMNQTRSQNVKLPPVPARQRPARLTFYDAKGGSSG 1070
>gi|242787422|ref|XP_002481003.1| DEAD/DEAH box helicase, putative [Talaromyces stipitatus ATCC
10500]
gi|218721150|gb|EED20569.1| DEAD/DEAH box helicase, putative [Talaromyces stipitatus ATCC
10500]
Length = 1187
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 256/694 (36%), Positives = 373/694 (53%), Gaps = 80/694 (11%)
Query: 252 GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKA 311
GI++ YSHQAE+I G +V+V+T TSSGKSL Y +P+L L D +S +Y+FPTKA
Sbjct: 359 GITRFYSHQAEAINNLYDGHHVIVSTSTSSGKSLIYQVPMLHELERDPNSRGIYIFPTKA 418
Query: 312 LAQDQLRA---LLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILP 368
LAQDQ R+ LL + D I + +DGDT +R +RD R++ TNPDMLH++ILP
Sbjct: 419 LAQDQRRSMKELLNFMEGLDHVI-VETFDGDTPMNERNTIRDEGRIIFTNPDMLHVTILP 477
Query: 369 YHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRL 428
G + L NL+ FVV+DE HAY G FG H A ++RRL R+
Sbjct: 478 QEGSWRTFLQNLK-------------------FVVVDELHAYNGLFGSHVAFVMRRLRRI 518
Query: 429 CSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRS 488
C+ V F+ +AT ANP EH + + + L DGSP +K F+ WN
Sbjct: 519 CAAVGNRRVRFISCSATVANPEEHMKTIFGVDDVRLTDFDGSPAGRKEFICWN------- 571
Query: 489 VLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTR-E 547
T D + + I+E + LF ++V G+R I FCR RK CE+VL+ R E
Sbjct: 572 ------TPFKDPHDPTSGRGDSIAEAARLFCQLVLRGVRVILFCRIRKQCEIVLAAVRTE 625
Query: 548 ILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLH 607
P + + + YR GY +DRR+IE++ F GKL GV ATNALELG+D+G +D +
Sbjct: 626 FQTLERPEVANLVMGYRGGYSPQDRRQIEKEMFDGKLMGVVATNALELGVDIGSLDAVIT 685
Query: 608 LGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQN 667
LGFP SI++L QQ+GR+GRR + SL+V + P DQ++M P+++F P +D N
Sbjct: 686 LGFPFSISNLRQQSGRAGRRNKDSLSVLIGDGFPTDQHYMSNPDEIFTKPNCELQVDLTN 745
Query: 668 HKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITT--LKNR-GYLSSDPSLDSSAKIFE 724
VLE H+ CAA E PL D+ YFG L +T +K+ GY +
Sbjct: 746 ELVLEGHVQCAAFEMPLKPEEDKAYFGEQLEEFASTRLIKDALGYYHCNERF-------- 797
Query: 725 YIGHEKMPSHTISIRAIESERYEVIDMQSNE--VLEEIEESKAFFQVYEGAVYMHQGHTY 782
PS +S+R +E + V+D N VLEE+E S+AFF +YEG ++MHQG TY
Sbjct: 798 ----RPKPSDFVSLRDMEGSSFAVVDTTHNRNIVLEEVETSRAFFTIYEGGIFMHQGQTY 853
Query: 783 LVKELNLSSKIALCQKADLKYFTKTRDYTDI---------HVSGGNNAYATKISKDQLTK 833
+V+ELN ++A + + + T+ RDYTDI H+ AY I
Sbjct: 854 IVRELNPEKRLARVVQVQVDWNTQQRDYTDIDPIETEAIRHIGPSARAYYGIIQ------ 907
Query: 834 TTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVE-Q 892
+ +GF+++ + G + D V++ P ++ +W+ VP+ ++E +
Sbjct: 908 ---------IHAVVYGFFKIDK-RGRVLDAVQVDNPPIDTFTKGMWLDVPKRAFEILESR 957
Query: 893 NFSFRSGLHAASHALLHVVPIYVRCNFSDLAPEC 926
+ + +HAA HA+L + P +V D+ EC
Sbjct: 958 RLNIAAAIHAAEHAVLSLFPTFVISLPGDVRTEC 991
>gi|301119977|ref|XP_002907716.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262106228|gb|EEY64280.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 818
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 281/799 (35%), Positives = 410/799 (51%), Gaps = 105/799 (13%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDN--TKSALKSTGISKLYSHQAESIMASLAGKNVVVA 276
Q+ HVE SAR A + L TK+ K I +LYSHQ E++ A L G+N V++
Sbjct: 11 QIAHVERRSARPAQYRALEPLQLSEKVTKALEKCYTIKQLYSHQFEAVEAILRGENAVLS 70
Query: 277 TMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIG-V 335
T T+SGKSL +N+P+LE L D ++ +Y+FPTKALAQDQL++L A D + +G
Sbjct: 71 TATASGKSLAFNVPMLEMLLEDPNARFMYLFPTKALAQDQLKSLRRFMGAADLPLHLGAT 130
Query: 336 YDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLI 395
+DGDT K R + R +TNPDMLH++ILP H Q+ +LSNLRL+
Sbjct: 131 FDGDTPMKSRSMVIRETRAFLTNPDMLHLTILPQHKQWKHVLSNLRLL------------ 178
Query: 396 FLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCME 455
V+DEAH Y+G FG H + + RRL RLC+ +YGS+P V +AT NP H +
Sbjct: 179 -------VVDEAHMYRGVFGSHVSCVFRRLFRLCA-LYGSNPQVVCCSATIQNPEAHFRQ 230
Query: 456 L--------------------------ANL-----STLELIQNDGSPCAQKLFVLWNPTS 484
L NL L++I DG+P +KLF +WNP
Sbjct: 231 LIPALPRQPMSLSRERADATREEEMGPPNLHFFRQRPLKVITEDGAPSVEKLFCIWNPEM 290
Query: 485 CLRSVLNKSQTDMDDTRNAA-NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLS 543
S SQ ++ A +K+++ I + S + A +V+ + + FCR RKL ELVL
Sbjct: 291 AKMSCSINSQQGKSPSQTAVVSKSATAIYQGSRILARLVEAEIATLLFCRGRKLTELVLM 350
Query: 544 YTREIL--EETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGH 601
L + +L+ + YR GY E RRRIE+ F G L GV ATNALELGID+G
Sbjct: 351 NVHSALKSDPRTQNLLRRVSSYRGGYTLEARRRIEQRLFRGDLLGVVATNALELGIDIGE 410
Query: 602 IDVTLHLGFPGSIASLWQQAGRSG-----RRERPSLAVYVAFEGPLDQYFM--KYPEKLF 654
+D T+HLG P SIASLWQQAGR+G R+ S+A+ V F+ PLDQ+F ++ +LF
Sbjct: 411 LDCTIHLGLPSSIASLWQQAGRAGRRQQQSRQSQSVALIVCFDAPLDQHFAQKQHAVELF 470
Query: 655 KSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDP 714
+ E ++ N ++L QHL+CAA E L Y + I + K +S
Sbjct: 471 QLEPEAVSLNPMNPRILGQHLLCAARESAL-------YSSQSGTDYIDSFKKLMQIS--- 520
Query: 715 SLDSSAKIFEYIGHEKMPS--HTISIRAIESERYEVIDMQSN--------EVLEEIEESK 764
+ Y H MP +S+R+I E Y V+ S+ EVL+EI K
Sbjct: 521 ---ETGGHLSYRVHSCMPKKFRAVSLRSICEENYTVVATNSDAVNEAADGEVLDEIPGDK 577
Query: 765 AFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKAD--LKYFTKTRDYTDIHVSGGNNAY 822
AFFQVY AVY+HQ YL+ L+ + +IA +K + L YFT RD+TD+ V + +
Sbjct: 578 AFFQVYPTAVYLHQAQEYLITRLDNTQRIAFAKKCNQPLAYFTTCRDFTDLEVKPKSESV 637
Query: 823 ATKISK-DQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQ 881
++ LT+ + T W G T + LP +A W++
Sbjct: 638 LVRVGTVSILTRVIGSTMLEKRTMRWLG-------------THDFSLPHMRSFGEAAWLE 684
Query: 882 VPQSVKAVVEQ--NFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERI 939
P +++ E S+ + LH H + +V +++ C+ D+ E N + R P R+
Sbjct: 685 FPVTLRRQFEARGGRSWTAALHGVGHLFVALVRLFILCDTEDVGTEHVNEFEKRVKPNRV 744
Query: 940 LLYDRHPGGTGVSKQVTDM 958
+++R GG+G+ ++ +
Sbjct: 745 TIFERREGGSGLVPEIVKV 763
>gi|154311192|ref|XP_001554926.1| hypothetical protein BC1G_06714 [Botryotinia fuckeliana B05.10]
Length = 1011
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 252/697 (36%), Positives = 383/697 (54%), Gaps = 60/697 (8%)
Query: 229 RKAVLVEIPDALLDNTKSALKST-GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCY 287
++A+ ++ L N +AL +T I++ Y+HQAE+I G NV+VAT TSSGKSL Y
Sbjct: 362 QEAIYGDLNFVLSQNLVNALYNTKNITQFYAHQAEAINNLHDGHNVIVATSTSSGKSLIY 421
Query: 288 NLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTK---AFDASIDIGVYDGDTTQKD 344
+PVL L D S A+Y+FPTKALAQDQ R+L M + + +I + +DGDT KD
Sbjct: 422 QVPVLHELEKDPHSRAMYIFPTKALAQDQRRSLKEMMRFMTGLEEAI-VETFDGDTEMKD 480
Query: 345 RMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVI 404
R +RD R++ TNPDMLH++ILP ++ L NL+ +VV+
Sbjct: 481 RNMIRDEGRIIFTNPDMLHITILPQEDKWRTFLQNLK-------------------YVVV 521
Query: 405 DEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLEL 464
DE H Y G FG H A I+RRL R+C+ + F+ +AT ANP EH + + + +
Sbjct: 522 DEIHVYNGLFGSHVAFIMRRLRRICAALGNRRIKFISCSATVANPMEHFKTIFGIENVRM 581
Query: 465 IQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQH 524
DGSP +K F+ WN T D + A+ +E + LF +++
Sbjct: 582 TDFDGSPSGRKEFLCWN-------------TPFKDPADPASGRGDTRAEAARLFCQLILR 628
Query: 525 GLRCIAFCRSRKLCELVLSYTREILEETA-PHLVDSICVYRAGYVAEDRRRIERDFFGGK 583
G+R IAFCR R+ CE ++ +E L P + + YR GY +DRRRIE + F GK
Sbjct: 629 GVRVIAFCRVRRQCEALVGAVKEELATLGRPECMAQVMGYRGGYTPQDRRRIESEMFEGK 688
Query: 584 LCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLD 643
L G+ AT ALELG+D+G +D L +GFP +IA+L QQ+GR+GRR + SL+V + P D
Sbjct: 689 LMGIIATTALELGVDIGSLDAVLTVGFPYTIANLRQQSGRAGRRNKDSLSVLIGDCFPSD 748
Query: 644 QYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITT 703
QY+M P+++F P +D QN VLE H+ CAA E P+ D YF L+
Sbjct: 749 QYYMNNPDEIFTKPNCELQVDLQNILVLEGHVQCAAFEMPIRPDEDAIYFPKNLAE---- 804
Query: 704 LKNRGYLSSDPSLDSSAKIFEYIG--HEKMPSHTISIRAIESERYEVIDMQ--SNEVLEE 759
++ L F + + PS ++IR E + + +ID+ N VLEE
Sbjct: 805 -------VAEERLVKDELGFYHCSERYRPTPSKLVAIRDTEEDHFAIIDISHGKNIVLEE 857
Query: 760 IEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGN 819
+E S+AFF +Y+G +++HQG+TYLVKE + KIA + + + T+ RDYTD+ +
Sbjct: 858 LEASRAFFTLYDGGIFLHQGNTYLVKEFSPERKIAKVELVKVDWTTQQRDYTDV-----D 912
Query: 820 NAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVW 879
I + + + A A + FGF+++ + I+ D +++ P S+ +W
Sbjct: 913 PIETEAIRRIPNSLSRAFFGAIKIQQNVFGFFKVDKKRRIL-DAIQVDNPPIILHSKGMW 971
Query: 880 IQVPQ-SVKAVVEQNFSFRSGLHAASHALLHVVPIYV 915
+ VP+ +++ +VE+ + +HAA HA+L ++P +V
Sbjct: 972 LDVPKLALEILVEKRLNIAGAIHAAEHAVLSLMPNFV 1008
>gi|121715534|ref|XP_001275376.1| DEAD/DEAH box helicase, putative [Aspergillus clavatus NRRL 1]
gi|119403533|gb|EAW13950.1| DEAD/DEAH box helicase, putative [Aspergillus clavatus NRRL 1]
Length = 1196
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 255/688 (37%), Positives = 380/688 (55%), Gaps = 62/688 (9%)
Query: 250 STGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPT 309
+ GI++ YSHQA++I + AG+NV+V+T TSSGKSL Y +P+L L D S +Y+FPT
Sbjct: 393 TKGITQFYSHQADAINSLYAGRNVIVSTSTSSGKSLIYQVPMLHELEKDPHSRGMYIFPT 452
Query: 310 KALAQDQLRALLAMTKAFDASIDIGV--YDGDTTQKDRMWLRDNARLLITNPDMLHMSIL 367
KALAQDQ R++ + + + D+ V +DGDT ++R +RD AR++ TNPDMLH+++L
Sbjct: 453 KALAQDQKRSMKELLQYINGLQDVMVETFDGDTPMENRNLIRDEARIIFTNPDMLHITVL 512
Query: 368 PYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCR 427
P + L NL+ FVV+DE H Y G FG H A I+RRL R
Sbjct: 513 PQESSWRTFLKNLK-------------------FVVVDELHVYNGLFGSHVAFIMRRLRR 553
Query: 428 LCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLR 487
+C+ V F+ +AT ANP H + + + LI DGSP +K F+ WN
Sbjct: 554 ICAAVGNRHVKFISCSATVANPEAHMKAIFGIDEVRLIDFDGSPSGRKEFICWN------ 607
Query: 488 SVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTR- 546
T D + + ++E + LF +++ G R IAFCR RKLCE++L R
Sbjct: 608 -------TPFKDPNDPTSGRGDTVAETARLFCQLILRGARVIAFCRIRKLCEVLLQAVRN 660
Query: 547 EILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTL 606
E P + + YR GY +DRR+IE++ F G L G+ ATNALELG+D+G +D +
Sbjct: 661 EFQNLERPEVGKLVMGYRGGYSPQDRRQIEKEMFDGHLMGIVATNALELGVDIGSLDAVV 720
Query: 607 HLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQ 666
LGFP SI++L QQ+GR+GRR + SL+V V P DQ++MK P++LF P ID
Sbjct: 721 TLGFPYSISNLRQQSGRAGRRNKDSLSVLVGDRYPADQHYMKNPDELFTKPNCELQIDLA 780
Query: 667 NHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYI 726
N +LE H+ CAA E P+ D YFG L T L + F Y
Sbjct: 781 NELILEGHIQCAAFEMPIRPDEDCVYFGKQLLVFAAT-----------RLVKDSFGF-YH 828
Query: 727 GHEKM---PSHTISIRAIESERYEVIDMQS--NEVLEEIEESKAFFQVYEGAVYMHQGHT 781
HE+ PS + IR E + + VID + N VLEE+E S+AFF +YEG +++HQG T
Sbjct: 829 CHERFRPHPSRCVPIRDTEDQHFAVIDTTNARNIVLEEVEASRAFFTIYEGGIFLHQGQT 888
Query: 782 YLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALAC 841
YLVKELN + A + + + T RDYTDI + T++ + + ++A
Sbjct: 889 YLVKELNTDQRFARVVRVHVDWSTMQRDYTDI------DPIETEMMRQINMVSASRAFYG 942
Query: 842 TVT--TTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVE-QNFSFRS 898
+V +GF+++ + G + D V + P ++ +W+ VP+ +++ ++ + +
Sbjct: 943 SVQIHAVVYGFFKIDK-RGRVLDAVAVDNPPIDIFTKGMWLDVPKRALEILDSRHLNVAA 1001
Query: 899 GLHAASHALLHVVPIYVRCNFSDLAPEC 926
+HAA HA+L ++P +V + D+ EC
Sbjct: 1002 AIHAAEHAVLSLLPTFVISSPGDVRTEC 1029
>gi|398401586|ref|XP_003853169.1| hypothetical protein MYCGRDRAFT_40769 [Zymoseptoria tritici IPO323]
gi|339473051|gb|EGP88145.1| hypothetical protein MYCGRDRAFT_40769 [Zymoseptoria tritici IPO323]
Length = 1152
Score = 437 bits (1125), Expect = e-119, Method: Compositional matrix adjust.
Identities = 263/730 (36%), Positives = 399/730 (54%), Gaps = 64/730 (8%)
Query: 246 SALKST-GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSAL 304
+AL +T GI LYSHQ E+I A G+NV++AT TSSGKSL Y LPVL AL + + A+
Sbjct: 361 NALYNTRGIQSLYSHQTEAINALHDGQNVIIATSTSSGKSLIYQLPVLHALETEPQTRAM 420
Query: 305 YMFPTKALAQDQLRALLAMTKAFDASIDI--GVYDGDTTQKDRMWLRDNARLLITNPDML 362
Y+FPTKALAQDQ R+L ++ D+ +DGDT DR ++RD AR++ TNPDML
Sbjct: 421 YIFPTKALAQDQKRSLKSILGYLPGLEDVLCETFDGDTPFTDRNYIRDEARIIFTNPDML 480
Query: 363 HMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALIL 422
H++ILP + L NLR FVV+DE H Y G FG H ALI+
Sbjct: 481 HLTILPQEESWRTFLKNLR-------------------FVVMDELHVYNGLFGAHVALIM 521
Query: 423 RRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNP 482
RRL R+C+ V FV +AT ANP EH + + ++L+ DGSPC +K F+ WN
Sbjct: 522 RRLRRICAAVGNRKVQFVSCSATVANPEEHMRTIFGIEDVKLVDFDGSPCGRKEFLCWN- 580
Query: 483 TSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVL 542
T D + + E + LF +++ G+R I FCR R+ CE++
Sbjct: 581 ------------TPYKDPADPTSGRGDSFMESARLFCQLILRGVRVITFCRIRRYCEILT 628
Query: 543 SYTR-EILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGH 601
+ + E+ +++ + YR GY +DRRRIE++ F GKL G+ T+ALELG+D+G
Sbjct: 629 TAIKAELASLDRSEVMNRVMAYRGGYTPQDRRRIEKEMFEGKLVGIIGTSALELGVDIGS 688
Query: 602 IDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECC 661
+D + GFP +IA+L QQ+GR+GRR + SL++ + P DQYFM+ P+++F P
Sbjct: 689 LDAVISHGFPYTIANLRQQSGRAGRRNKDSLSILLGDCFPTDQYFMQNPDEIFTRPNCEL 748
Query: 662 HIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAK 721
+D N VLE H+ CAA E P+ D YF L+ T + L + D
Sbjct: 749 QVDLTNMLVLEGHIQCAAHEMPIEPDNDTVYFTKLLTEICTDRLRKDSLGFYHTAD---- 804
Query: 722 IFEYIGHEKMPSHTISIRAIESERYEVIDMQ--SNEVLEEIEESKAFFQVYEGAVYMHQG 779
++ H PS +++IR E + +ID+ +N VLEE+E S+AFF +YEG +++HQG
Sbjct: 805 --RFLPH---PSRSVAIRDTEDSHFAIIDITHGANTVLEELEASRAFFTIYEGGIFLHQG 859
Query: 780 HTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQL-TKTTAQA 838
YL+K + + A ++ ++ + T+ RDYTDI + I + L +K+ A
Sbjct: 860 RKYLIKTFDPDNLYARVERVNVDWITQQRDYTDI-----DPIEIEAIRRLPLPSKSRANF 914
Query: 839 LACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQ-SVKAVVEQNFSFR 897
+ FGF++L + + I+ D V++ P S+ +W+ VP+ +++ + + +
Sbjct: 915 GTIKIHQNVFGFFKLDKKNRIL-DAVQVDNPPIILHSKGLWLDVPKLAIEILQSRRLNLA 973
Query: 898 SGLHAASHALLHVVPIYVRCNFSDLAPECP-------NPHDSRYFPERILLYDRHPG--G 948
+ +HAA HA+L ++P +V D+ EC SR P R+ YD G G
Sbjct: 974 AAIHAAEHAILSLMPNFVISLPGDVKTECKVAVKEFSKKASSRKRPARLTFYDSKGGAHG 1033
Query: 949 TGVSKQVTDM 958
+G++ + D
Sbjct: 1034 SGIAAKAFDF 1043
>gi|258577969|ref|XP_002543166.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237903432|gb|EEP77833.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 1146
Score = 437 bits (1124), Expect = e-119, Method: Compositional matrix adjust.
Identities = 306/946 (32%), Positives = 471/946 (49%), Gaps = 127/946 (13%)
Query: 43 LSHVKGALNQLEKFGVRVGIEDIENLAVLCPKVVQFANDDM---------ESKNHDDSIV 93
++K A+ + + G ++ IED+ + VL P V+F D E++
Sbjct: 107 FENIKSAV-ETQTGGRQLTIEDVAKVKVLIPHAVRFEVVDAGVVDVLSVPEARGSRAGRA 165
Query: 94 IINVSTEERDKVEDNL-------GSGQKAISLSKIFNAMKKRERSFKTNL---WEAVNLL 143
+ TEE +V DN+ G Q + L + + K+E++ T W+ L
Sbjct: 166 WDDWETEEMGEVVDNITQTPGDSGGKQNEVLLFEFVDGDLKKEKATGTAFRTPWDDSIRL 225
Query: 144 MCKLQKRVMSLSVEDLLTYVKERRTDVRGNEVKRARRSQSSTSSSHSFQRRCSDKSQLLP 203
QK ++SL +E K R + AR + S+K LP
Sbjct: 226 PAYNQKHMLSL-IE------KRNRKFAEAIDTFLARCQNEGVDPVAKLE---SEKDMFLP 275
Query: 204 L--------------------------EMVEHLRKGIGSQGQMVHVED--ISARKAVLVE 235
+ E++ +++ GQ+V A+ V +
Sbjct: 276 VFGGPGTTTPAAAKLPPQIPKERKSVSEILAEIQEQEWYTGQVVPNGHRIFDAQSPVYGD 335
Query: 236 IPDALLDNTKSALKST-GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEA 294
+ L N +AL +T GI++LYSHQAE+I G NV+V+T TSSGKSL Y +P+L
Sbjct: 336 LNFQLSQNVVNALYNTKGITQLYSHQAEAINNLHDGHNVIVSTSTSSGKSLIYQIPMLCE 395
Query: 295 LSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDA--SIDIGVYDGDTTQKDRMWLRDNA 352
L D S +Y+FPTKALAQDQ R + + + D + +DGDT + R +RD A
Sbjct: 396 LERDPQSRGMYIFPTKALAQDQRRNMQELLQYLDGLEYTMVETFDGDTPMEQRNAIRDEA 455
Query: 353 RLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKG 412
R++ TNPDMLH++ILP + L NL+ FVV+DE H Y G
Sbjct: 456 RIIFTNPDMLHITILPQEASWRTFLKNLK-------------------FVVVDELHVYNG 496
Query: 413 AFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPC 472
FG H A I+RRL R+C+ + + FV +AT ANP EH + + ++L DGSP
Sbjct: 497 LFGSHVAFIMRRLRRICASLGNYNVKFVSCSATVANPEEHMKTIFGVDEVKLTDCDGSPS 556
Query: 473 AQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFC 532
+K FV WN T D + + + + E + LF +++ G+R IAFC
Sbjct: 557 GRKEFVCWN-------------TPFKDPDDPTSGRGNSMLESARLFCQLILRGVRVIAFC 603
Query: 533 RSRKLCELVLSYTREILEETAPHLVDSICV-YRAGYVAEDRRRIERDFFGGKLCGVAATN 591
R RK CE++LS R+ V + YR GY +DRR+IER+ F GKL G+ ATN
Sbjct: 604 RVRKQCEILLSTVRDEFRALDRSSVAKFVMGYRGGYSPQDRRQIEREMFEGKLLGIVATN 663
Query: 592 ALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPE 651
ALELG+D+G +D + GFP SI++L QQ+GR+GRR + SL++ V DQ++M+ P+
Sbjct: 664 ALELGVDIGSLDAVITHGFPYSISNLRQQSGRAGRRNKDSLSILVGDMYATDQHYMRNPD 723
Query: 652 KLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSS---GITTLKNRG 708
+LF P +D QN VLE HL CAA E P+ D KYFG+ L G N G
Sbjct: 724 ELFTKPNCELQVDLQNELVLEGHLQCAAYEMPIRPEEDIKYFGTQLPQLAFGRLVRDNMG 783
Query: 709 YLSSDPSLDSSAKIFEYIGHEKM---PSHTISIRAIESERYEVIDMQSNE--VLEEIEES 763
+ Y HE+ P+ + IR +E E Y VID +N V+EEIE++
Sbjct: 784 F---------------YHCHERFRPQPARCVQIRDVEQEHYAVIDTTNNRNVVIEEIEDT 828
Query: 764 KAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYA 823
+ F +YEGA+++HQGHTY+VKELN + A + + + T+ RD+TD+ +
Sbjct: 829 RVSFTLYEGAIFLHQGHTYMVKELNTDQRFARVLRVHVDWTTQQRDFTDV------DPIE 882
Query: 824 TKISKDQLTKTTAQAL--ACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQ 881
T+ + + +A A + T +G++++ + + I+ D + L + S+ +W+
Sbjct: 883 TEAIRPLGDASNCRAFFGAIQIHTVVYGYFKIDKRNRIL-DAIVLDISPIDKLSKGMWLD 941
Query: 882 VP-QSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPEC 926
VP Q+++ + N + + +HAA HA++ ++P +V + D+ EC
Sbjct: 942 VPKQALEILASHNLNAAAAIHAAEHAVMSLLPTFVVSSPGDVRTEC 987
>gi|242787427|ref|XP_002481004.1| DEAD/DEAH box helicase, putative [Talaromyces stipitatus ATCC
10500]
gi|218721151|gb|EED20570.1| DEAD/DEAH box helicase, putative [Talaromyces stipitatus ATCC
10500]
Length = 1151
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 245/658 (37%), Positives = 354/658 (53%), Gaps = 79/658 (12%)
Query: 252 GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKA 311
GI++ YSHQAE+I G +V+V+T TSSGKSL Y +P+L L D +S +Y+FPTKA
Sbjct: 359 GITRFYSHQAEAINNLYDGHHVIVSTSTSSGKSLIYQVPMLHELERDPNSRGIYIFPTKA 418
Query: 312 LAQDQLRA---LLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILP 368
LAQDQ R+ LL + D I + +DGDT +R +RD R++ TNPDMLH++ILP
Sbjct: 419 LAQDQRRSMKELLNFMEGLDHVI-VETFDGDTPMNERNTIRDEGRIIFTNPDMLHVTILP 477
Query: 369 YHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRL 428
G + L NL+ FVV+DE HAY G FG H A ++RRL R+
Sbjct: 478 QEGSWRTFLQNLK-------------------FVVVDELHAYNGLFGSHVAFVMRRLRRI 518
Query: 429 CSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRS 488
C+ V F+ +AT ANP EH + + + L DGSP +K F+ WN
Sbjct: 519 CAAVGNRRVRFISCSATVANPEEHMKTIFGVDDVRLTDFDGSPAGRKEFICWN------- 571
Query: 489 VLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTR-E 547
T D + + I+E + LF ++V G+R I FCR RK CE+VL+ R E
Sbjct: 572 ------TPFKDPHDPTSGRGDSIAEAARLFCQLVLRGVRVILFCRIRKQCEIVLAAVRTE 625
Query: 548 ILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLH 607
P + + + YR GY +DRR+IE++ F GKL GV ATNALELG+D+G +D +
Sbjct: 626 FQTLERPEVANLVMGYRGGYSPQDRRQIEKEMFDGKLMGVVATNALELGVDIGSLDAVIT 685
Query: 608 LGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQN 667
LGFP SI++L QQ+GR+GRR + SL+V + P DQ++M P+++F P +D N
Sbjct: 686 LGFPFSISNLRQQSGRAGRRNKDSLSVLIGDGFPTDQHYMSNPDEIFTKPNCELQVDLTN 745
Query: 668 HKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITT--LKNR-GYLSSDPSLDSSAKIFE 724
VLE H+ CAA E PL D+ YFG L +T +K+ GY +
Sbjct: 746 ELVLEGHVQCAAFEMPLKPEEDKAYFGEQLEEFASTRLIKDALGYYHCNERF-------- 797
Query: 725 YIGHEKMPSHTISIRAIESERYEVIDMQSNE--VLEEIEESKAFFQVYEGAVYMHQGHTY 782
PS +S+R +E + V+D N VLEE+E S+AFF +YEG ++MHQG TY
Sbjct: 798 ----RPKPSDFVSLRDMEGSSFAVVDTTHNRNIVLEEVETSRAFFTIYEGGIFMHQGQTY 853
Query: 783 LVKELNLSSKIALCQKADLKYFTKTRDYTDI---------HVSGGNNAYATKISKDQLTK 833
+V+ELN ++A + + + T+ RDYTDI H+ AY I
Sbjct: 854 IVRELNPEKRLARVVQVQVDWNTQQRDYTDIDPIETEAIRHIGPSARAYYGIIQ------ 907
Query: 834 TTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVE 891
+ +GF+++ + G + D V++ P ++ +W+ VP+ ++E
Sbjct: 908 ---------IHAVVYGFFKIDK-RGRVLDAVQVDNPPIDTFTKGMWLDVPKRAFEILE 955
>gi|327298075|ref|XP_003233731.1| DEAD/DEAH box helicase [Trichophyton rubrum CBS 118892]
gi|326463909|gb|EGD89362.1| DEAD/DEAH box helicase [Trichophyton rubrum CBS 118892]
Length = 1135
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 261/709 (36%), Positives = 396/709 (55%), Gaps = 59/709 (8%)
Query: 228 ARKAVLVEIPDALLDNTKSALKST-GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLC 286
A+K V ++ L N +AL +T GI++ YSHQA++I G NV+V+T TSSGKSL
Sbjct: 302 AKKPVFGDLDFLLSQNLVNALYNTRGITQFYSHQAKAINDLHDGHNVIVSTSTSSGKSLI 361
Query: 287 YNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDA--SIDIGVYDGDTTQKD 344
Y +P+L L D S +Y+FPTKALAQDQ R++L M + + I + +DGDT
Sbjct: 362 YQVPMLHELEKDAHSRGIYIFPTKALAQDQRRSMLDMLQYMEGLEHIMVETFDGDTPMAS 421
Query: 345 RMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVI 404
R +R+ AR++ TNPD+LH++ILP + + L NL+ +VV+
Sbjct: 422 RNAIREEARVIFTNPDILHVTILPNESLWRKFLKNLK-------------------YVVV 462
Query: 405 DEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLEL 464
DE H Y G FG H +LI+RRL R+C+ + SD F+ +AT ANP EH + + ++L
Sbjct: 463 DELHVYNGLFGTHVSLIMRRLRRICASIGNSDVKFISCSATVANPEEHMKAIFGIDEVKL 522
Query: 465 IQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQH 524
DGSP +K F+ W QT D +A++ S I E + +F +++
Sbjct: 523 TDIDGSPSGRKEFLCW-------------QTPYKDPNDASSGRGSSIDESAKIFCQLILR 569
Query: 525 GLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICV-YRAGYVAEDRRRIERDFFGGK 583
G+R IAFCR RK CE +L+ ++ V + YR GY +DRR+IER+ F GK
Sbjct: 570 GVRVIAFCRIRKQCEYLLNAVKDEFRTLNRSDVSRFVMGYRGGYSPQDRRKIEREMFEGK 629
Query: 584 LCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLD 643
L G+ ATNALELG+D+G +D + FP SI++ QQ+GR+GRR + SL++ VA + D
Sbjct: 630 LLGIVATNALELGVDIGTLDAVITHEFPHSISNFRQQSGRAGRRNKDSLSILVAGQSVAD 689
Query: 644 QYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITT 703
Q++M P+ LF P +D +N VLE H+ CAA E P+ D YFGS L+
Sbjct: 690 QHYMNNPDDLFTKPNCGLLVDLENELVLEGHVQCAAFEMPIRPENDSAYFGSQLAH---- 745
Query: 704 LKNRGYLSSDPSLDSSAKIFEYIGHEKM---PSHTISIRAIESERYEVIDMQSNE--VLE 758
L + + D Y HE+ PS +SIR+I+ + Y +ID +N V+E
Sbjct: 746 LADTRLIRDDMGF--------YHCHERFRPNPSKFVSIRSIDEDIYAIIDTTNNRNVVIE 797
Query: 759 EIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGG 818
EI++++ FF VYEGA+Y HQG+TYLVKELN + + A +A + + T+ RD+T+ V
Sbjct: 798 EIDDARVFFTVYEGAIYFHQGNTYLVKELNTTKRFARVVRAHVDWITEQRDFTN--VDPI 855
Query: 819 NNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAV 878
+IS+ L+ A + T +G+++ + G I D V L P S+ +
Sbjct: 856 ETEAIRRISR--LSDYRAFFGKIAIHTLVYGYFKKDK-KGRILDAVALDTPPIDKMSKGL 912
Query: 879 WIQVPQSVKAVV-EQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPEC 926
W+ VP++ ++ N + + +HAA HA++ ++P ++ + D+ EC
Sbjct: 913 WLDVPKTALEILSSHNLNAAAAIHAAEHAIMSLLPTFLISSPGDIRTEC 961
>gi|302422510|ref|XP_003009085.1| Hrq1p [Verticillium albo-atrum VaMs.102]
gi|261352231|gb|EEY14659.1| Hrq1p [Verticillium albo-atrum VaMs.102]
Length = 1175
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 255/733 (34%), Positives = 398/733 (54%), Gaps = 72/733 (9%)
Query: 242 DNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSS 301
D + + GI++ ++HQAE++ G++VVVAT TSSGKSL Y LP+ AL D+ +
Sbjct: 374 DLVNALFNAKGITQFFAHQAEALNGLYNGQHVVVATSTSSGKSLIYQLPLAHALEQDMDT 433
Query: 302 SALYMFPTKALAQDQLRALLAMTKAFDASIDIGV--YDGDTTQKDRMWLRDNARLLITNP 359
A+++FPTKALAQDQ R+L + ++ V +DGDT +R +RD AR++ TNP
Sbjct: 434 RAMFIFPTKALAQDQKRSLKELISYMPGMEEVVVETFDGDTPMTERNMIRDEARIIFTNP 493
Query: 360 DMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTA 419
DMLH++ILP ++ L NL+ +VV+DE H Y G G H +
Sbjct: 494 DMLHITILPQEERWRTFLKNLK-------------------YVVVDELHYYNGQMGSHMS 534
Query: 420 LILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVL 479
I+RRL R+C+ V F+ +AT ANP+EH + + + L+ DGSP +K F+
Sbjct: 535 FIMRRLRRICAAVGNRHIKFISCSATVANPQEHFKTIFGIKNVRLVDFDGSPSGRKEFLC 594
Query: 480 WNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCE 539
WN T D + A+ ++E + L+ ++V G+R IAFCR R+ CE
Sbjct: 595 WN-------------TPYRDPGDPASGRGDALAECARLYCQLVLRGVRIIAFCRVREQCE 641
Query: 540 -LVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGID 598
LV + E+ + + YR GY +DRR+IE + F GKL GV AT+ALELGID
Sbjct: 642 KLVNAVKSEMDSLGRQECMGRVMGYRGGYTPQDRRQIESEMFEGKLLGVVATSALELGID 701
Query: 599 VGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPI 658
+G +D L GFP +IA+L QQ+GR+GRR + SL++ V P DQ++M+ P++LF P
Sbjct: 702 IGSLDCVLTWGFPYTIANLRQQSGRAGRRNKDSLSILVGDCFPTDQHYMQNPDELFTKPN 761
Query: 659 ECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDS 718
+D +N V E H+ CAA E P+ + D +YFGS L+ + R L
Sbjct: 762 CALQVDLENMLVREGHIQCAAYEMPIRPVEDAQYFGSDLAK---VCQERLIL-------- 810
Query: 719 SAKIFEYIGHEKM---PSHTISIRAIESERYEVIDMQ--SNEVLEEIEESKAFFQVYEGA 773
++ Y HE+ P+ ++IR E E + +ID+ N VLEE+E S+AFF +Y+GA
Sbjct: 811 -GELGFYHCHERFRPQPAKFVAIRDTEDEHFAIIDVTHGKNLVLEELEASRAFFTLYDGA 869
Query: 774 VYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTK 833
+++HQG YLV++ + +A +K ++++ TK RD+TD + T+ K ++
Sbjct: 870 IFLHQGSKYLVRDFDPDRHMARVEKVNVEWITKQRDFTD------TDPIETEAIK-RING 922
Query: 834 TTAQALACTVTTTW--FGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVV- 890
+ ++A T+ FGF++L + +I D V + P + +W+ +P+ ++
Sbjct: 923 SLSKAFYGTIKIQQNVFGFFKLDKKKRVI-DAVHVSNPPVIRYGKGMWLDIPKKALLILT 981
Query: 891 EQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPEC-------PNPHDSRYFPERILLYD 943
E+ + +HAA HA+L ++P +V D+ EC R P R+ YD
Sbjct: 982 ERRLHIAASIHAAEHAILSLMPNFVISMPGDVRTECKVALKEFAQKESQRKRPARLTFYD 1041
Query: 944 RH--PGGTGVSKQ 954
GG+G+S +
Sbjct: 1042 AKGGAGGSGISTK 1054
>gi|374105661|gb|AEY94572.1| FAAL080Wp [Ashbya gossypii FDAG1]
Length = 1060
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 256/730 (35%), Positives = 398/730 (54%), Gaps = 84/730 (11%)
Query: 254 SKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALA 313
+LY HQAE++ A AG NV++ T TSSGKSL Y L ++AL D S+ +Y+FPTKALA
Sbjct: 269 DQLYIHQAEALNAVHAGNNVIITTSTSSGKSLIYQLCAIDALLKDRDSTFMYIFPTKALA 328
Query: 314 QDQLRA---LLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYH 370
QDQ RA LL+ + A++ + YDGDT Q++R +R +AR++ TNPDM+H SILP H
Sbjct: 329 QDQKRAFQQLLSRIPSL-ATVVVATYDGDTEQQNRAAIRKHARVIFTNPDMIHSSILPNH 387
Query: 371 GQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCS 430
+ L +L+L VV+DE H YKG FG H AL++RRL RL
Sbjct: 388 PGWRHFLMHLKL-------------------VVVDELHVYKGLFGSHVALVMRRLLRLVR 428
Query: 431 HVY-GSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSV 489
Y + F+ +AT P EH + +S + + DGSP K V+WNP + + +
Sbjct: 429 DFYLNAQLRFISCSATIKRPVEHMTNMFGVSDIVHVFKDGSPNGLKYLVVWNPPALPQHM 488
Query: 490 LNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREIL 549
+K + I E + + E++ + R IAFC R++CEL++ R IL
Sbjct: 489 ---------------HKRENFIQESAKILVELIVNNTRTIAFCYVRRVCELLMKEVRIIL 533
Query: 550 EETAP-HLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHL 608
+E LV+ + YR GY +DRR+IE + F G L V +TNALELGID+G +D L
Sbjct: 534 QEMGRIDLVNDVMSYRGGYSVDDRRKIEEEMFHGGLRAVISTNALELGIDIGTLDCVLMC 593
Query: 609 GFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFK-----SPIECCHI 663
GFP S+A+ QQ+GR+GRR + SL + VA + P+DQ+++ + E L + ++ +
Sbjct: 594 GFPLSLANFHQQSGRAGRRNKDSLTLVVAADSPVDQHYVAHSEILLEYDNDPDKLQELTL 653
Query: 664 DAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLK----NRGYLSSDPSLDSS 719
D N +LE H+ CAA E P+ + D+++F + T + + GY ++D L
Sbjct: 654 DFDNELILEGHIQCAAFELPIDIKRDQQFFNKKYLQDLCTNRLQHDSDGYHANDNYL--- 710
Query: 720 AKIFEYIGHEKMPSHTISIRAIESERYEVIDMQS--NEVLEEIEESKAFFQVYEGAVYMH 777
P +S+R +E + Y V+D+ + N V+EEIE S+ F +Y+G +++H
Sbjct: 711 ----------PWPPKMVSLRGVEEDIYAVVDITNGRNIVIEEIEASRTTFTLYDGGIFIH 760
Query: 778 QGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQ 837
QG+ YLVKE N K A Q+ D+ + T RD+TD+ + ++ + LT +
Sbjct: 761 QGYPYLVKEFNADDKYAKVQRVDVDWLTSQRDFTDV------DPQEIQLVR-SLTDSDVP 813
Query: 838 ALACTVTTTW--FGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVP-QSVKAVVEQNF 894
+ TT FGF+++ + G I D VE + P +S+ +WI +P Q+++ V E+
Sbjct: 814 VYFGKIRTTMIVFGFFKVDK-HGRILDAVETHNPPVIIDSKGLWIDIPRQALELVKERGL 872
Query: 895 SFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNP-------HDSRYFPERILLYDRHPG 947
+ G+HAA H ++ ++P ++ ++ EC P SR P R++ YD G
Sbjct: 873 NMAGGIHAAEHGIIGLLPRFIVAGVDEINTECKAPEKEFAQRQTSRLRPARLVFYDSKGG 932
Query: 948 --GTGVSKQV 955
G+G+S ++
Sbjct: 933 HHGSGLSSKI 942
>gi|425776653|gb|EKV14861.1| DEAD/DEAH box helicase, putative [Penicillium digitatum PHI26]
Length = 1168
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 261/746 (34%), Positives = 399/746 (53%), Gaps = 81/746 (10%)
Query: 242 DNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSS 301
D + + GI+++Y+HQ E+I G NV+V+T TSSGKSL Y +P+L L D S
Sbjct: 364 DLVNALYNTKGITQMYAHQTEAINHLYDGHNVIVSTSTSSGKSLIYQVPMLHELEKDPES 423
Query: 302 SALYMFPTKALAQDQLRALLAMTKAFDA--SIDIGVYDGDTTQKDRMWLRDNARLLITNP 359
+Y+FPTKALAQDQ R+++ + + + + +DGDT R +RD AR++ TNP
Sbjct: 424 RGMYIFPTKALAQDQRRSMMDLLQYMNGLQHTMVETFDGDTPMGSRNVIRDEARIIFTNP 483
Query: 360 DMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTA 419
DMLH++ILP + L NL+ FVV+DE H Y G FG H A
Sbjct: 484 DMLHVTILPQESTWRTFLKNLK-------------------FVVVDELHVYNGLFGSHVA 524
Query: 420 LILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVL 479
I+RRL R+C+ V F+ +AT ANP +H + + ++L+ DGSP +K FV
Sbjct: 525 FIMRRLRRICAAVGNRHVKFISCSATVANPEDHMKSVFGVQDVKLVDFDGSPSGRKEFVC 584
Query: 480 WNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCE 539
WN T D ++ + + ++E + LF +++ G+R IAFCR RKLCE
Sbjct: 585 WN-------------TPFKDPKDPRSGRADIVTETARLFCQLILKGVRVIAFCRIRKLCE 631
Query: 540 LVLSYTREILEETAPHLVDSICV-YRAGYVAEDRRRIERDFFGGKLCGVAATNALELGID 598
++L R E + ++ + YR GY +DRR+IE++ F GKL G+ ATNALELG+D
Sbjct: 632 ILLQGVRAEFERLGRTEIGNLVMGYRGGYSPQDRRQIEKEMFEGKLMGIVATNALELGVD 691
Query: 599 VGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPI 658
+G +D + +GFP SI++L QQ+GR+GRR + SL+V V P DQ++M+ P ++F P
Sbjct: 692 IGSLDAVITMGFPYSISNLRQQSGRAGRRNKDSLSVLVGDRYPTDQHYMQNPNEIFTRPN 751
Query: 659 ECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDS 718
ID N +LE H+ CAA E P+ D YFG L + T L+ DP
Sbjct: 752 CELQIDLSNELILEGHVQCAAFEMPIRPEEDSIYFGQQLLALAPT-----RLTKDP---- 802
Query: 719 SAKIFEYIGHEKM---PSHTISIRAIESERYEVIDMQSNE--VLEEIEESKAFFQVYEGA 773
+ Y H + PS ++SIR E + + VID +N VLEEIE S+A F +YEG
Sbjct: 803 ---LGFYHCHPRFRPQPSRSVSIRDTEEQHFAVIDTTNNRNIVLEEIEVSRALFTIYEGG 859
Query: 774 VYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTK 833
+++HQG TYLVKELN S +A + + + T RD+TDI A ++ + +
Sbjct: 860 IFLHQGTTYLVKELNTESFLARVVRVHVDWNTMQRDFTDIDPI---ETEAMRLVSNDPSA 916
Query: 834 TTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVP-QSVKAVVEQ 892
+ A A + +GF+++ + G + D V + P ++ +W+ VP +++ +
Sbjct: 917 SRAFFGAIQIHAVVYGFFKIDK-RGRVLDAVAVDTPPIDRLARGMWLDVPTRAIDILQSH 975
Query: 893 NFSFRSGLHAASHALLHVVPIYVRCNFSDLAPEC----------------PNPHD----- 931
+ + +HAA HA+L ++P +V + D+ EC P+ +
Sbjct: 976 RLNVAAAIHAAEHAVLSLLPSFVVSSPGDVRTECKVAKKELGRPLRRANVPSEFEEKLKP 1035
Query: 932 -SRYFPERILLYDRH--PGGTGVSKQ 954
SR P R+ YD P G+G++ +
Sbjct: 1036 PSRQRPARLTFYDAKGGPCGSGIASK 1061
>gi|302666438|ref|XP_003024818.1| hypothetical protein TRV_00982 [Trichophyton verrucosum HKI 0517]
gi|291188891|gb|EFE44207.1| hypothetical protein TRV_00982 [Trichophyton verrucosum HKI 0517]
Length = 1129
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 263/709 (37%), Positives = 393/709 (55%), Gaps = 59/709 (8%)
Query: 228 ARKAVLVEIPDALLDNTKSALKST-GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLC 286
A+K V ++ L N +AL +T GI++ YSHQA++I G NV+V+T TSSGKSL
Sbjct: 296 AKKPVFGDLDFLLSQNLVNALYNTRGITQFYSHQAKAINDLHDGHNVIVSTSTSSGKSLI 355
Query: 287 YNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDA--SIDIGVYDGDTTQKD 344
Y +P+L L + S +Y+FPTKALAQDQ R++L M K + I + +DGDT
Sbjct: 356 YQVPMLHELEKNPHSRGMYIFPTKALAQDQRRSMLDMLKYMEGLEHIMVETFDGDTPMAS 415
Query: 345 RMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVI 404
R +R+ AR++ TNPD+LH++ILP + L NL+ +VV+
Sbjct: 416 RNAIREEARIIFTNPDILHVTILPNESLWRNFLKNLK-------------------YVVV 456
Query: 405 DEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLEL 464
DE H Y G FG H ALI+RRL R+C+ + SD F+ +AT ANP EH + + ++L
Sbjct: 457 DELHVYNGLFGTHVALIMRRLRRICASIGNSDVKFISCSATVANPEEHMKAIFGIDEVKL 516
Query: 465 IQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQH 524
DGSP +K F+ W QT D +A++ S I E + LF +++
Sbjct: 517 TDIDGSPSGRKEFLCW-------------QTPYKDPNDASSGRGSSIDESAKLFCQLILR 563
Query: 525 GLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICV-YRAGYVAEDRRRIERDFFGGK 583
G+R IAFCR RK CE +L+ ++ V + YR GY +DRR+IER+ F GK
Sbjct: 564 GVRVIAFCRIRKQCEYLLNAVKDEFRTLNRSDVSRFVMGYRGGYSPQDRRKIEREMFEGK 623
Query: 584 LCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLD 643
L G+ ATNALELG+D+G +D + FP SI++ QQ+GR+GRR + SL++ VA + D
Sbjct: 624 LLGIVATNALELGVDIGTLDAVITHEFPHSISNFRQQSGRAGRRNKDSLSILVAGQSAAD 683
Query: 644 QYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITT 703
Q++M P+ LF P +D +N VLE H+ CAA E P+ D YFG L+
Sbjct: 684 QHYMNNPDDLFTKPNCGLLVDLENELVLEGHVQCAAFEMPIRPENDSTYFGPQLAH---- 739
Query: 704 LKNRGYLSSDPSLDSSAKIFEYIGHEKM---PSHTISIRAIESERYEVIDMQSNE--VLE 758
L + + D Y HE+ PS +SIR+I+ Y +ID +N V+E
Sbjct: 740 LADTRLIRDDMGF--------YHCHERFRPNPSKFVSIRSIDEGNYAIIDTTNNRNVVVE 791
Query: 759 EIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGG 818
EI++++ FF VYEGA+Y HQG+TYLVKELN + + A +A + + T+ RD+T+ V
Sbjct: 792 EIDDARVFFTVYEGAIYFHQGNTYLVKELNTTKRFARVVRAHVDWITEQRDFTN--VDPI 849
Query: 819 NNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAV 878
+IS+ L+ A + T +G+++ R G I D V L P S+ +
Sbjct: 850 ETEAIRRISR--LSDYRAFFGKIAIHTLVYGYFKKDR-KGRILDAVALDTPPIDKMSKGL 906
Query: 879 WIQVPQSVKAVV-EQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPEC 926
W+ VP++ ++ N + + +HAA HA++ ++P ++ + D+ EC
Sbjct: 907 WLDVPKTALEILSSHNLNAAAAIHAAEHAIISLLPTFLISSPGDIRTEC 955
>gi|169618774|ref|XP_001802800.1| hypothetical protein SNOG_12579 [Phaeosphaeria nodorum SN15]
gi|160703678|gb|EAT79877.2| hypothetical protein SNOG_12579 [Phaeosphaeria nodorum SN15]
Length = 1094
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 252/736 (34%), Positives = 392/736 (53%), Gaps = 76/736 (10%)
Query: 240 LLDNTKSALKST-GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHD 298
L N +AL +T I++LY+HQAE+I G N++V+T TSSGKSL Y LPVL L D
Sbjct: 353 LSQNMVNALYNTKNITQLYAHQAEAINNLYEGHNIIVSTSTSSGKSLIYQLPVLHQLEQD 412
Query: 299 LSSSALYMFPTKALAQDQLRALLAMTKAFDA--SIDIGVYDGDTTQKDRMWLRDNARLLI 356
+ A+Y+FPTKALAQDQ +++ + + + + +DGDT +R ++RD AR++
Sbjct: 413 PDTRAMYIFPTKALAQDQRKSMKELLRFMTGLEEVVVETFDGDTPMSERNYIRDEARIIF 472
Query: 357 TNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGC 416
TNPDMLH++ILP + +DE H Y G FG
Sbjct: 473 TNPDMLHITILPQEDAW------------------------------LDELHVYNGLFGA 502
Query: 417 HTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKL 476
H A I+RRL R+C+ + F+ +AT ANP EH + + + L DGSP +K
Sbjct: 503 HMAYIMRRLRRICAALGNRHVKFISCSATVANPEEHMRTIFGVDEVRLTDFDGSPSGRKE 562
Query: 477 FVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRK 536
F+ WN T D + + ++E + LF +++ G+R IAFCR RK
Sbjct: 563 FLCWN-------------TPFKDPGDPTSGRGDCMAETAKLFCQLMLRGVRSIAFCRVRK 609
Query: 537 LCELVLSYTR-EILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALEL 595
CE +LS + E+ ++ + YR GY +DRR+IER+ F GKL G+ T+ALEL
Sbjct: 610 QCEALLSAVKMELTNLERTEVLARVMSYRGGYTPQDRRQIEREMFDGKLIGIVCTSALEL 669
Query: 596 GIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFK 655
G+D+G +D + +GFP +IA+L QQ+GR+GRR + SL+V + P DQY+M P+++F
Sbjct: 670 GVDIGSLDAVVTVGFPYTIANLRQQSGRAGRRNKDSLSVLIGDCFPTDQYYMSNPDEIFT 729
Query: 656 SPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPS 715
P +D +N V+E H+ CAA E P+++ D YFG L R + DP
Sbjct: 730 KPNSALQVDLENMLVVEGHIQCAAHEIPINIETDTAYFGPLLCK-----VARERMRRDP- 783
Query: 716 LDSSAKIFEYIGHE--KMPSHTISIRAIESERYEVIDMQ--SNEVLEEIEESKAFFQVYE 771
+ F ++ PS ++IR E + + +ID+ N VLEE+E S+AFF +Y+
Sbjct: 784 -----QGFYHVNERFLPQPSRFVAIRDTEEDHFAIIDITHGKNTVLEELEASRAFFTLYD 838
Query: 772 GAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQL 831
G +++HQG+TYLVKE + +A + + + T+ RDYTDI + I +
Sbjct: 839 GGIFLHQGNTYLVKEFSQERMLAKVELVKVDWTTQQRDYTDI-----DPVETEAIRRIPG 893
Query: 832 TKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVE 891
+K A V +GF+++ + I+ D V++ P S+ +W+ VP+S +++
Sbjct: 894 SKCKAFYGPIKVKQVVYGFFKIDKKRRIL-DAVQVDNPPIILFSKGMWLDVPRSALDILK 952
Query: 892 -QNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPEC-------PNPHDSRYFPERILLYD 943
+ + +G+HAA HA+L ++P +V D+ EC R P R+ YD
Sbjct: 953 SRRLNIAAGIHAAEHAVLSLMPNFVISMPGDVRTECKFAPKEFAKKETQRKRPARLTFYD 1012
Query: 944 RHPGGTGVSKQVTDMK 959
G +G+++ D+K
Sbjct: 1013 AKGGASGIARVSRDVK 1028
>gi|425771254|gb|EKV09703.1| DEAD/DEAH box helicase, putative [Penicillium digitatum Pd1]
Length = 1168
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 261/746 (34%), Positives = 399/746 (53%), Gaps = 81/746 (10%)
Query: 242 DNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSS 301
D + + GI+++Y+HQ E+I G NV+V+T TSSGKSL Y +P+L L D S
Sbjct: 364 DLVNALYNTKGITQMYAHQTEAINHLYDGHNVIVSTSTSSGKSLIYQVPMLHELEKDPES 423
Query: 302 SALYMFPTKALAQDQLRALLAMTKAFDA--SIDIGVYDGDTTQKDRMWLRDNARLLITNP 359
+Y+FPTKALAQDQ R+++ + + + + +DGDT R +RD AR++ TNP
Sbjct: 424 RGMYIFPTKALAQDQRRSMMDLLQYMNGLQHTMVETFDGDTPMGSRNVIRDEARIIFTNP 483
Query: 360 DMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTA 419
DMLH++ILP + L NL+ FVV+DE H Y G FG H A
Sbjct: 484 DMLHVTILPQESTWRTFLKNLK-------------------FVVVDELHVYNGLFGSHVA 524
Query: 420 LILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVL 479
I+RRL R+C+ V F+ +AT ANP +H + + ++L+ DGSP +K FV
Sbjct: 525 FIMRRLRRICAAVGNRHVKFISCSATVANPEDHMKSVFGVQDVKLVDFDGSPSGRKEFVC 584
Query: 480 WNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCE 539
WN T D ++ + + ++E + LF +++ G+R IAFCR RKLCE
Sbjct: 585 WN-------------TPFKDPKDPRSGRADIVTETARLFCQLILKGVRVIAFCRIRKLCE 631
Query: 540 LVLSYTREILEETAPHLVDSICV-YRAGYVAEDRRRIERDFFGGKLCGVAATNALELGID 598
++L R E + ++ + YR GY +DRR+IE++ F GKL G+ ATNALELG+D
Sbjct: 632 ILLQGVRAEFERLGRTEIGNLVMGYRGGYSPQDRRQIEKEMFEGKLMGIVATNALELGVD 691
Query: 599 VGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPI 658
+G +D + +GFP SI++L QQ+GR+GRR + SL+V V P DQ++M+ P ++F P
Sbjct: 692 IGSLDAVITMGFPYSISNLRQQSGRAGRRNKDSLSVLVGDRYPTDQHYMQNPNEIFTRPN 751
Query: 659 ECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDS 718
ID N +LE H+ CAA E P+ D YFG L + T L+ DP
Sbjct: 752 CELQIDLSNELILEGHVQCAAFEMPIRPEEDSIYFGQQLLALAPT-----RLTKDP---- 802
Query: 719 SAKIFEYIGHEKM---PSHTISIRAIESERYEVIDMQSNE--VLEEIEESKAFFQVYEGA 773
+ Y H + PS ++SIR E + + VID +N VLEEIE S+A F +YEG
Sbjct: 803 ---LGFYHCHPRFRPQPSRSVSIRDTEEQHFAVIDTTNNRNIVLEEIEVSRALFTIYEGG 859
Query: 774 VYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTK 833
+++HQG TYLVKELN S +A + + + T RD+TDI A ++ + +
Sbjct: 860 IFLHQGTTYLVKELNTESFLARVVRVHVDWNTMQRDFTDIDPI---ETEAMRLVSNDPSA 916
Query: 834 TTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVP-QSVKAVVEQ 892
+ A A + +GF+++ + G + D V + P ++ +W+ VP +++ +
Sbjct: 917 SRAFFGAIQIHAVVYGFFKIDK-RGRVLDAVAVDNPPIDRLARGMWLDVPTRAIDILQSH 975
Query: 893 NFSFRSGLHAASHALLHVVPIYVRCNFSDLAPEC----------------PNPHD----- 931
+ + +HAA HA+L ++P +V + D+ EC P+ +
Sbjct: 976 RLNVAAAIHAAEHAVLSLLPSFVVSSPGDVRTECKVAKKELGRPLRRANVPSEFEEKLKP 1035
Query: 932 -SRYFPERILLYDRH--PGGTGVSKQ 954
SR P R+ YD P G+G++ +
Sbjct: 1036 PSRQRPARLTFYDAKGGPCGSGIASK 1061
>gi|410722562|ref|ZP_11361832.1| helicase family protein with metal-binding cysteine cluster
[Methanobacterium sp. Maddingley MBC34]
gi|410596116|gb|EKQ50802.1| helicase family protein with metal-binding cysteine cluster
[Methanobacterium sp. Maddingley MBC34]
Length = 938
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 260/761 (34%), Positives = 410/761 (53%), Gaps = 75/761 (9%)
Query: 206 MVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIM 265
++E L K + ++ H+E ++ R+A E+ D L + + L+ + I +LY HQ E+
Sbjct: 5 VLETLEKNRIFRRKVEHIETLNERQAHYGEVKD-LPSSLQKYLQDSHI-QLYQHQVEATE 62
Query: 266 ASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTK 325
G+NV++ T T+SGK+L +NL ++E LS D ++ALY++P KALA DQL L +
Sbjct: 63 LIRNGENVLITTPTASGKTLAFNLAIVETLSRDEEATALYIYPAKALANDQLNVLKHLES 122
Query: 326 AFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAF 385
+ +YDGDT + R W+++N+RL++TNP MLH+ I+ +H Q+SR NL+
Sbjct: 123 SCGLDFKPNIYDGDTPRNIRPWIKENSRLILTNPYMLHL-IMGWHHQWSRFYKNLK---- 177
Query: 386 SLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTAT 445
+VVIDEAH Y+G FG + A ++RRL R+C+H YGS P F+ S+AT
Sbjct: 178 ---------------YVVIDEAHHYRGVFGSNVAFLIRRLRRICNH-YGSYPQFILSSAT 221
Query: 446 SANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAAN 505
ANP E L +S E+ Q D SP +K FVL+NP + +
Sbjct: 222 LANPDEFSRNLVGMSFQEVNQ-DTSPSGKKHFVLYNPFAKWGDL---------------- 264
Query: 506 KTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRA 565
S E LF MV + L+ + F SRK+ E++ +T++ L +T P LV+ I YR+
Sbjct: 265 ---STHQETKNLFQLMVTNDLQTLCFTVSRKMAEIIAMWTKKELNQTRPDLVNRITAYRS 321
Query: 566 GYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSG 625
GY+AE+RR+IE+ G L GV TNALELG+D+G +D + G+PG++ S WQQAGR+G
Sbjct: 322 GYLAEERRKIEKGLKTGSLVGVTCTNALELGVDIGSLDCVIISGYPGTMISTWQQAGRAG 381
Query: 626 RRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLS 685
R E S+ + VAFE LDQY MK+PE LF E ID QN K+ + HL+CA E PL+
Sbjct: 382 RAENESMVIMVAFENALDQYLMKHPEFLFHKSHENAVIDLQNKKITQGHLMCAVKEMPLT 441
Query: 686 LIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESER 745
+ EKYF + + + ++ G + + YIG P+ IS+ I S+
Sbjct: 442 VDDFEKYFEADYDT-LEAIRQGGLVK------ETLIGLTYIGRND-PAMNISLDQISSDH 493
Query: 746 YEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFT 805
++V + ++E ++ A+ + +EGAV ++QG TY V +L+ + +K D+ Y T
Sbjct: 494 FKVF--HNKRLMETMDRQHAYSEAHEGAVLINQGETYTVDSFDLAKRTINVKKMDVDYHT 551
Query: 806 KTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVE 865
+ D+ + +IS ++ + V+ ++ + + G + T
Sbjct: 552 QALKNVDVSIE-------KEISSRKIGNFSVSFGEVKVSQDFYKYKTMLYGKTL--STYN 602
Query: 866 LYLPKYSYESQAVWIQVPQSVKAVVEQNFS----FRSGLHAASHALLHVVPIYVRCNFSD 921
L LP Y ++ +W VP V+ +E F+ + LH A HAL+ + P+ V C+ D
Sbjct: 603 LDLPPLKYHTRGLWFTVPGLVQDTLENVFTKKDAYAGSLHGAEHALISMFPLLVLCDRFD 662
Query: 922 LAPECPNPHDSRYFPE----RILLYDRHPGGTGVSKQVTDM 958
+ N Y PE I +YD + GG G++++ ++
Sbjct: 663 IGGLSTN-----YHPETGKATIFIYDAYEGGIGLAEKAVEV 698
>gi|296818625|ref|XP_002849649.1| Hrq1p [Arthroderma otae CBS 113480]
gi|238840102|gb|EEQ29764.1| Hrq1p [Arthroderma otae CBS 113480]
Length = 1137
Score = 434 bits (1116), Expect = e-118, Method: Compositional matrix adjust.
Identities = 259/711 (36%), Positives = 397/711 (55%), Gaps = 63/711 (8%)
Query: 228 ARKAVLVEIPDALLDNTKSALKST-GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLC 286
A++ V ++ L N +AL +T GI++ YSHQA++I G NV+V+T TSSGKSL
Sbjct: 302 AQQPVYGDLNFLLSQNLVNALYNTRGITRFYSHQAKAINDLHEGHNVIVSTSTSSGKSLI 361
Query: 287 YNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDA--SIDIGVYDGDTTQKD 344
Y +P+L L + S +Y+FPTKALAQDQ R++L M + I + +DGDT +
Sbjct: 362 YQVPMLHELEKNPHSRGMYIFPTKALAQDQRRSMLDMLPYMEGMEHIMVETFDGDTPMAN 421
Query: 345 RMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVI 404
R +RD AR++ TNPD+LH++ILP+ + L NL+ +VV+
Sbjct: 422 RNAIRDEARIIFTNPDILHLTILPHESLWRVFLKNLK-------------------YVVV 462
Query: 405 DEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLEL 464
DE H Y G FG H ALI+RRL R+C+ + SD FV +AT ANP +H + + ++L
Sbjct: 463 DELHVYNGLFGSHVALIMRRLRRVCASIGNSDVKFVSCSATVANPEQHMKAIFGVDKVKL 522
Query: 465 IQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQH 524
DGSP +K ++ W Q D+ + ++ SS I E + +F +++
Sbjct: 523 TDIDGSPSGRKEYLCW-------------QVPFKDSNDPSSGRSSGIEESARIFCQLILR 569
Query: 525 GLRCIAFCRSRKLCELVL-SYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGK 583
G+R IAFCR RK CE +L + RE + YR GY +DRR+IER+ F GK
Sbjct: 570 GVRVIAFCRIRKQCEYLLNAVKREFRTLDRSDASRFVMGYRGGYSPQDRRKIEREMFEGK 629
Query: 584 LCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLD 643
L G+ ATNALELG+D+G +D + FP SI++ QQ+GR+GRR + SL++ V + D
Sbjct: 630 LLGIVATNALELGVDIGSLDAVITHEFPHSISNFRQQSGRAGRRNKDSLSILVGGQSAAD 689
Query: 644 QYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITT 703
Q++M++P++LF P ID +N VLE H+ CAA E P+ L D YFG L+
Sbjct: 690 QHYMRHPDELFTKPNCELLIDLENELVLEGHIQCAAFEMPIRLENDSIYFGPQLAE---- 745
Query: 704 LKNRGYLSSDPSLDSSAKIFEYIGHEKM---PSHTISIRAIESERYEVIDMQSNE--VLE 758
L + D Y HE+ PS +SIR+IE Y VID +N V+E
Sbjct: 746 LAATRLVKDDMGF--------YHCHERFRPNPSKCVSIRSIEDGNYAVIDTTNNRNVVIE 797
Query: 759 EIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGG 818
EIE+++ FF +YEGA+Y HQG+TYLVKELN + + A +A + + T+ RD+T+I
Sbjct: 798 EIEDTRVFFTIYEGAIYFHQGNTYLVKELNTTKRFARVVRAHVDWITEQRDFTNI----- 852
Query: 819 NNAYATKISKDQLTKTTAQAL--ACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQ 876
+ T+ + +++ +A + T +G+++ + G I D V L P S+
Sbjct: 853 -DPIETEAIRRISRQSSYRAFFGKIVIHTLVYGYFKKDK-KGRILDAVALDTPPIDRLSK 910
Query: 877 AVWIQVPQS-VKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPEC 926
+W+ VP++ + + + + + +HAA HA++ ++P ++ + D+ EC
Sbjct: 911 GLWLDVPKTALDILASHDLNAAAAIHAAEHAVMSLLPTFLISSPDDIRTEC 961
>gi|444315327|ref|XP_004178321.1| hypothetical protein TBLA_0A10230 [Tetrapisispora blattae CBS 6284]
gi|387511360|emb|CCH58802.1| hypothetical protein TBLA_0A10230 [Tetrapisispora blattae CBS 6284]
Length = 1063
Score = 434 bits (1115), Expect = e-118, Method: Compositional matrix adjust.
Identities = 249/721 (34%), Positives = 384/721 (53%), Gaps = 75/721 (10%)
Query: 255 KLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQ 314
+ Y+HQA++I A G NV++ T TSSGKSL Y L ++ L + S+ +Y+FPTKALAQ
Sbjct: 283 QFYTHQADAINAVHDGSNVIITTSTSSGKSLIYQLSAIDLLLKNPESTFMYIFPTKALAQ 342
Query: 315 DQLRALLAMTKAFDASIDI--GVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQ 372
DQ RA A+ D+ YDGDT + R ++R N+R++ TNPDM+H SILP H
Sbjct: 343 DQKRAFQALLAKIPELNDVVTDTYDGDTEPEQRKYIRKNSRVIFTNPDMIHASILPSHPN 402
Query: 373 FSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHV 432
+ L NL+L VV+DE H YKG FG H AL++RRL R+C
Sbjct: 403 WRHFLYNLKL-------------------VVVDELHTYKGLFGSHVALVMRRLIRICQEY 443
Query: 433 YGS-DPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLN 491
Y + F+ +AT P EH + +S LI DGSP + K ++WNP + + +
Sbjct: 444 YNNYSLQFISCSATLKKPIEHMKGIFGISNTILINEDGSPSSNKHLLIWNPPTLSQHL-- 501
Query: 492 KSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEE 551
K S I E + + +++ +R IAFC R++CEL++ R I EE
Sbjct: 502 -------------RKRESFIRESARILVQLILKNVRTIAFCYVRRVCELLMKEVRAIFEE 548
Query: 552 T-APHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGF 610
P ++ + YR GY A+DRR+IER+ F G L V +TNALELGID+G +D L GF
Sbjct: 549 IDKPDMITEVMAYRGGYSAKDRRKIEREMFHGNLRAVISTNALELGIDIGTLDTVLMCGF 608
Query: 611 PGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFK----SPIECCHIDAQ 666
P S+A+ QQ+GR+GRR + S+ + VA + P+DQ+++ +PE L + + +D
Sbjct: 609 PMSLANFHQQSGRAGRRNKDSMTLVVASDSPIDQHYIAHPEILLEVNNTDAYQELILDFD 668
Query: 667 NHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYI 726
N +L+ H+ CAA E P+ + D+ YF + + K R S D Y
Sbjct: 669 NFLILDGHIQCAAFELPIKIERDKDYFDEKYLTRLC--KERLQFSKD----------GYH 716
Query: 727 GHEKM---PSHTISIRAIESERYEVIDMQS--NEVLEEIEESKAFFQVYEGAVYMHQGHT 781
H K PS +S+R +E +++ V+D+ + N V+EEIE S+ F +Y+G +++HQG+
Sbjct: 717 THNKFLPWPSKHVSLRGVEEDQFAVVDITNGRNAVIEEIETSRTSFTLYDGGIFIHQGYP 776
Query: 782 YLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALAC 841
YLVKE N + A Q+ D+ + T RD+TD+ + + + + T
Sbjct: 777 YLVKEFNPEERYATVQRVDVDWVTSQRDFTDV-----DPQMIEMVRSLEGSDTPIYYGQI 831
Query: 842 TVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQ-SVKAVVEQNFSFRSGL 900
T FGF+++ + II D+VE + P +S+ WI +P+ +++ E+ S +
Sbjct: 832 KTTIIVFGFFKVDKFKRII-DSVETHNPPVIIDSKGFWIDIPKRALEICKEKGLSIAGAI 890
Query: 901 HAASHALLHVVPIYVRCNFSDLAPECPNP-------HDSRYFPERILLYDRHPG--GTGV 951
HAA HA++ ++P ++ ++ EC P R P R++ D G G+G+
Sbjct: 891 HAAEHAIIGLLPRFIVAGVEEIQTECKAPEKEFAERQTKRKRPARLIFTDSKGGKYGSGL 950
Query: 952 S 952
S
Sbjct: 951 S 951
>gi|367045974|ref|XP_003653367.1| hypothetical protein THITE_2088508 [Thielavia terrestris NRRL 8126]
gi|347000629|gb|AEO67031.1| hypothetical protein THITE_2088508 [Thielavia terrestris NRRL 8126]
Length = 1221
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 273/772 (35%), Positives = 414/772 (53%), Gaps = 72/772 (9%)
Query: 205 EMVEHLRKGIGSQGQMVHVED--ISARKAVLVEIPDALL--DNTKSALKSTGISKLYSHQ 260
E+V+ +R+ GQ+V A++AV ++ D LL D + + GI++ Y+HQ
Sbjct: 392 EIVQEIRECPWYTGQIVPDGHRVFEAQEAVYGDL-DFLLSQDLVNTLYNAKGITQFYAHQ 450
Query: 261 AESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL 320
AE+I A AG NVVVAT TSSGKSL Y LPVL AL D ++ A+Y+FPTKALAQDQ R+L
Sbjct: 451 AEAINALHAGHNVVVATSTSSGKSLIYQLPVLHALERDPNTRAMYVFPTKALAQDQRRSL 510
Query: 321 LAMTKAFDASIDIGV--YDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILS 378
M D+ V +DGDT +R +RD AR++ TNPDMLH++ILP ++ L
Sbjct: 511 KDMMSYMPGLEDVLVETFDGDTPMNERGTIRDEARIIFTNPDMLHITILPQEDKWRTFLK 570
Query: 379 NLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPS 438
NL+ +VV+DE H Y G G H A I+RRL R C+ +
Sbjct: 571 NLK-------------------YVVVDELHYYNGLLGSHVAFIMRRLRRTCAALGNRHVK 611
Query: 439 FVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMD 498
F+ +AT ANP +H + + + LI DGSP +K F+ WN T
Sbjct: 612 FISCSATVANPEQHFKTIFGIDDVRLIDFDGSPSGRKEFLCWN-------------TPYK 658
Query: 499 DTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETA-PHLV 557
+ A+ + + E + LF +++ G+R IAFCR R+ CE ++ ++ LE +V
Sbjct: 659 VPGDPASGRGNAMLECARLFCQLILRGVRVIAFCRVREQCEKLVGAVKQELETLGRSEVV 718
Query: 558 DSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASL 617
+ YR GY A+DRRRIE + F GKL G+ AT ALELG+D+G +D L GFP +IA+L
Sbjct: 719 PRVMGYRGGYTAQDRRRIETEMFEGKLLGIIATTALELGVDIGTLDCVLTWGFPYTIANL 778
Query: 618 WQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVC 677
QQ+GR+GRR + SL++ V +DQY+M+ P++LF P +D N V E H+ C
Sbjct: 779 RQQSGRAGRRNKDSLSILVGDSFAVDQYYMQNPDELFTKPNCELQVDLDNMLVKEGHIQC 838
Query: 678 AALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEK---MPSH 734
AA E P+ D YFGS L+ + L F Y H++ +PS
Sbjct: 839 AAYEMPIQPAEDAVYFGSDLAQ-----------VCEERLIKDETGF-YHCHDRFRPLPSK 886
Query: 735 TISIRAIESERYEVIDMQ--SNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSK 792
+SIR E + + ++D+ N VLEE+E S+A F +Y+GA+++HQG TYLV++ N K
Sbjct: 887 FVSIRDTEEDHFAIVDITHGRNIVLEELEASRATFTIYDGAIFLHQGDTYLVRDFNPDQK 946
Query: 793 IALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYR 852
+A ++ + + T RDYTDI + + + + ++ A A + FG+++
Sbjct: 947 LARVERVKVDWLTSQRDYTDI-----DPVETEAVKRLRGSRWRAYYGAIRIKQVVFGYFK 1001
Query: 853 LWRGSGIIFDTVELYLPKYSYESQAVWIQVPQ-SVKAVVEQNFSFRSGLHAASHALLHVV 911
+ G I D V++ P S+ +W+ VP+ ++ + + + +HAA HA++ ++
Sbjct: 1002 VDARRGRILDAVQVDNPPVVRHSKGMWLDVPKRALDILTARRLHVAAAIHAAQHAVMSLI 1061
Query: 912 PIYVRCNFSDLAPECPNP-------HDSRYFPERILLYDRH--PGGTGVSKQ 954
P +V D+ EC + R P R+ YD GG+G++ +
Sbjct: 1062 PNFVVSMPGDVRTECKSALKEFARRETQRKRPARLTFYDAKGGAGGSGINTK 1113
>gi|45184744|ref|NP_982462.1| AAL080Wp [Ashbya gossypii ATCC 10895]
gi|44980090|gb|AAS50286.1| AAL080Wp [Ashbya gossypii ATCC 10895]
Length = 1060
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 255/730 (34%), Positives = 397/730 (54%), Gaps = 84/730 (11%)
Query: 254 SKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALA 313
+LY HQAE++ A AG NV++ T TSSGKSL Y L ++AL D S+ +Y+FPTKALA
Sbjct: 269 DQLYIHQAEALNAVHAGNNVIITTSTSSGKSLIYQLCAIDALLKDRDSTFMYIFPTKALA 328
Query: 314 QDQLRA---LLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYH 370
QDQ RA LL+ + A++ + YDGDT Q++R +R +AR++ TNPDM+H SILP H
Sbjct: 329 QDQKRAFQQLLSRIPSL-ATVVVATYDGDTEQQNRAAIRKHARVIFTNPDMIHSSILPNH 387
Query: 371 GQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCS 430
+ L +L+L VV+DE H YKG FG H AL++RRL RL
Sbjct: 388 PGWRHFLMHLKL-------------------VVVDELHVYKGLFGSHVALVMRRLLRLVR 428
Query: 431 HVY-GSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSV 489
Y + F+ +AT P EH + +S + + DGSP K +WNP + + +
Sbjct: 429 DFYLNAQLRFISCSATIKRPVEHMTNMFGVSDIVHVFKDGSPNGLKYLGVWNPPALPQHM 488
Query: 490 LNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREIL 549
+K + I E + + E++ + R IAFC R++CEL++ R IL
Sbjct: 489 ---------------HKRENFIQESAKILVELIVNNTRTIAFCYVRRVCELLMKEVRIIL 533
Query: 550 EETAP-HLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHL 608
+E LV+ + YR GY +DRR+IE + F G L V +TNALELGID+G +D L
Sbjct: 534 QEMGRIDLVNDVMSYRGGYSVDDRRKIEEEMFHGGLRAVISTNALELGIDIGTLDCVLMC 593
Query: 609 GFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFK-----SPIECCHI 663
GFP S+A+ QQ+GR+GRR + SL + VA + P+DQ+++ + E L + ++ +
Sbjct: 594 GFPLSLANFHQQSGRAGRRNKDSLTLVVAADSPVDQHYVAHSEILLEYDNDPDKLQELTL 653
Query: 664 DAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLK----NRGYLSSDPSLDSS 719
D N +LE H+ CAA E P+ + D+++F + T + + GY ++D L
Sbjct: 654 DFDNELILEGHIQCAAFELPIDIKRDQQFFNKKYLQDLCTNRLQHDSDGYHANDNYL--- 710
Query: 720 AKIFEYIGHEKMPSHTISIRAIESERYEVIDMQS--NEVLEEIEESKAFFQVYEGAVYMH 777
P +S+R +E + Y V+D+ + N V+EEIE S+ F +Y+G +++H
Sbjct: 711 ----------PWPPKMVSLRGVEEDIYAVVDITNGRNIVIEEIEASRTTFTLYDGGIFIH 760
Query: 778 QGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQ 837
QG+ YLVKE N K A Q+ D+ + T RD+TD+ + ++ + LT +
Sbjct: 761 QGYPYLVKEFNADDKYAKVQRVDVDWLTSQRDFTDV------DPQEIQLVR-SLTDSDVP 813
Query: 838 ALACTVTTTW--FGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVP-QSVKAVVEQNF 894
+ TT FGF+++ + G I D VE + P +S+ +WI +P Q+++ V E+
Sbjct: 814 VYFGKIRTTMIVFGFFKVDK-HGRILDAVETHNPPVIIDSKGLWIDIPRQALELVKERGL 872
Query: 895 SFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNP-------HDSRYFPERILLYDRHPG 947
+ G+HAA H ++ ++P ++ ++ EC P SR P R++ YD G
Sbjct: 873 NMAGGIHAAEHGIIGLLPRFIVAGVDEINTECKAPEKEFAQRQTSRLRPARLVFYDSKGG 932
Query: 948 --GTGVSKQV 955
G+G+S ++
Sbjct: 933 HHGSGLSSKI 942
>gi|367001873|ref|XP_003685671.1| hypothetical protein TPHA_0E01420 [Tetrapisispora phaffii CBS 4417]
gi|357523970|emb|CCE63237.1| hypothetical protein TPHA_0E01420 [Tetrapisispora phaffii CBS 4417]
Length = 1118
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 283/872 (32%), Positives = 443/872 (50%), Gaps = 116/872 (13%)
Query: 125 MKKRERSFKTNLWEAVNLLMCKLQKRVMSLSVEDLLTYV--------KERRTDVRGNEVK 176
+ KRE F L + +N K +L+ E+ LTY+ K + E
Sbjct: 191 INKRELHFNNRLIDFINKCTEK------NLNPENELTYLATSMLPQMKNYEDPIVAMEKA 244
Query: 177 RARRSQSSTSSSHSFQRRCSDKSQLLPLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEI 236
+ R+ +S++ D + +P EM++ L+ Q+ ++ V +E
Sbjct: 245 KLLRNNKLANSNND-----EDGAITIP-EMIQSLKNTTFYNSQI--------KEEVTIES 290
Query: 237 PDALLDN-----TKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPV 291
+ +N ++ L S K Y+HQA++I A G+NV++ T TSSGKSL Y L
Sbjct: 291 KHSQFENLNFNISEQVLNSLPHKKFYTHQADAINAINNGENVIITTSTSSGKSLIYQLST 350
Query: 292 LEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDAS----------IDIGVYDGDTT 341
++ L +S+ LY+FPTKALAQDQ RA + + + I I YDGDT
Sbjct: 351 IDFLLKKPNSTFLYIFPTKALAQDQKRAFENLLTTINENSNNSIPELRNIIIDTYDGDTD 410
Query: 342 QKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRF 401
Q+ R ++RDNAR++ TNPDM+H SILP H ++ L NL F
Sbjct: 411 QQKRKFIRDNARIIFTNPDMIHTSILPNHPKWRPFLYNLT-------------------F 451
Query: 402 VVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSD-PSFVFSTATSANPREHCMELANLS 460
+V+DE H YK FG H L++RRL RLC Y ++ F+ +AT NP +H ++ +++
Sbjct: 452 IVVDELHIYKSLFGSHVVLVMRRLQRLCREYYENNFLQFISCSATLKNPIKHMQDIFSIN 511
Query: 461 TLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAE 520
+ LI NDGS K V+WNP +L + + K S I + + + E
Sbjct: 512 DVTLINNDGSSTGAKHLVIWNP-----QILAQHER----------KRESFIRDSAKILVE 556
Query: 521 MVQHGLRCIAFCRSRKLCELVLSYTREILEE-TAPHLVDSICVYRAGYVAEDRRRIERDF 579
++ +R IAFC R++CEL++ R I +E ++ + YR GY A DRR+IER+
Sbjct: 557 LMLKNVRTIAFCYVRRVCELLMKEVRLIFQEMNRMDMITDVMSYRGGYSASDRRKIEREM 616
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFE 639
F G L V +TNALELGID+G++D L GFP S+A+ QQ+GR+GRR + SL + VA +
Sbjct: 617 FHGNLKAVISTNALELGIDIGNLDAVLMCGFPLSVANFHQQSGRAGRRNKDSLTLVVASD 676
Query: 640 GPLDQYFMKYPEKLFKS----PIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGS 695
P+DQ+++ +PE L S + ++ N +LE H+ CAA E P+++ D KYF
Sbjct: 677 SPVDQHYVAHPESLINSDDLDSYQDLVLNFDNMLILESHIQCAAFELPINIERDSKYFEE 736
Query: 696 GLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKM---PSHTISIRAIESERYEVIDMQ 752
I + L SD Y H + PS +S+R +E + Y VID
Sbjct: 737 KHLLKICHER----LQSDSE--------GYHTHPRFLPWPSSNVSLRGVEEDYYAVIDRT 784
Query: 753 SNE--VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDY 810
+ + V+EEIE S+ F +Y+GA+ +HQG+ YLVKE N+ K A + D+ + T RD+
Sbjct: 785 NGKDIVIEEIEASRTSFTLYDGAILIHQGYPYLVKEFNVEEKYASVIRVDVDWLTSQRDF 844
Query: 811 TDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPK 870
TD+ + I + + VT FG++++ + + I+ D+VE Y P
Sbjct: 845 TDV-----DPQEIELIRSLENSDVPVYFGKFLVTIVVFGYFKVDKYNRIM-DSVETYNPP 898
Query: 871 YSYESQAVWIQVPQSVKAVVE-QNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNP 929
+ S+ +WI +P + E +N + +HAA HA++ ++P ++ +++ EC P
Sbjct: 899 INIRSKGLWIDLPSRALDLCEAKNLNIAGAIHAAEHAIMGLLPKFIVAGVDEISTECKAP 958
Query: 930 -------HDSRYFPERILLYDRHPG--GTGVS 952
R P R++ YD G G+G+S
Sbjct: 959 EKEFAERQTKRKRPARLVFYDSRGGVYGSGLS 990
>gi|255950486|ref|XP_002566010.1| Pc22g21130 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211593027|emb|CAP99401.1| Pc22g21130 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1171
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 248/697 (35%), Positives = 385/697 (55%), Gaps = 63/697 (9%)
Query: 242 DNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSS 301
D + + GI+++Y+HQ E+I G NV+V+T TSSGKSL Y +P+L L D S
Sbjct: 371 DLVNALYNTKGITQMYAHQTEAINHLYEGHNVIVSTSTSSGKSLIYQVPMLHELEKDPES 430
Query: 302 SALYMFPTKALAQDQLRALLAMTKAFDA--SIDIGVYDGDTTQKDRMWLRDNARLLITNP 359
+Y+FPTKALAQDQ R+++ + + + + + +DGDT R +RD AR++ TNP
Sbjct: 431 RGMYIFPTKALAQDQRRSMMDLLQYMNGLQNTMVETFDGDTPMGSRNSIRDEARIIFTNP 490
Query: 360 DMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTA 419
DMLH++ILP + L NL+ FVV+DE H Y G FG H A
Sbjct: 491 DMLHITILPQESSWRTFLKNLK-------------------FVVVDELHVYNGLFGSHVA 531
Query: 420 LILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVL 479
I+RRL R+C+ V F+ +AT ANP +H + + ++L+ DGSP +K FV
Sbjct: 532 FIMRRLRRICAAVGNRHVKFISCSATVANPEDHMKSVFGVQDVKLVDFDGSPSGRKEFVC 591
Query: 480 WNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCE 539
WN T D ++ + + ++E + LF +++ G+R IAFCR RKLCE
Sbjct: 592 WN-------------TPFKDPKDPTSGRADTVTETARLFCQLILRGVRVIAFCRIRKLCE 638
Query: 540 LVLSYTREILEETAPHLVDSICV-YRAGYVAEDRRRIERDFFGGKLCGVAATNALELGID 598
++L R + + + + YR GY +DRR+IE++ F GKL G+ ATNALELG+D
Sbjct: 639 ILLQGVRAEFDRLDRTEIGKLVMGYRGGYSPQDRRQIEKEMFEGKLMGIVATNALELGVD 698
Query: 599 VGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPI 658
+G +D + +GFP SI++L QQ+GR+GRR + SL+V V P DQ++M+ P+++F P
Sbjct: 699 IGSLDAVITMGFPYSISNLRQQSGRAGRRNKDSLSVLVGDRYPTDQHYMQNPDEIFTRPN 758
Query: 659 ECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDS 718
ID N +LE H+ CAA E P+ D YFG L L+ P+ +
Sbjct: 759 CELQIDLSNELILEGHVQCAAFEMPIRPEEDSIYFGQQL------------LALAPTRLT 806
Query: 719 SAKIFEYIGHEKM---PSHTISIRAIESERYEVIDMQSNE--VLEEIEESKAFFQVYEGA 773
+ Y H + PS ++SIR E + + VID +N VLEE+E S+AFF +YEG
Sbjct: 807 KDALGFYHCHPRFRPQPSRSVSIRDTEDQHFAVIDTTNNRNIVLEEVEASRAFFTIYEGG 866
Query: 774 VYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISK---DQ 830
+++HQG TYLVKELN S +A + + + T RD+TDI + T++ + +
Sbjct: 867 IFLHQGTTYLVKELNTDSFLARVVRVHVDWNTMQRDFTDI------DPIETEMMRPVGND 920
Query: 831 LTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQV-PQSVKAV 889
+ + A A + +GF+++ + G + D V + P ++ +W+ V P+++ +
Sbjct: 921 PSASRAFFGAVQIHAVVYGFFKIDK-RGRVLDAVAVDNPPIDRLTRGMWLDVPPRAIDIL 979
Query: 890 VEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPEC 926
+ + +HAA HA+L ++P +V + D+ EC
Sbjct: 980 QSHRLNVAAAIHAAEHAVLSLLPSFVVSSPGDVRTEC 1016
>gi|50553154|ref|XP_503987.1| YALI0E15576p [Yarrowia lipolytica]
gi|49649856|emb|CAG79580.1| YALI0E15576p [Yarrowia lipolytica CLIB122]
Length = 1029
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 263/739 (35%), Positives = 405/739 (54%), Gaps = 88/739 (11%)
Query: 250 STGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPT 309
+ G++KL++HQA+++ A G+NVVV T TSSGKSL Y PVLE+L ++ SS AL++FPT
Sbjct: 265 TKGVTKLFTHQADALNALYRGQNVVVCTPTSSGKSLIYQTPVLESLLNNDSSRALFIFPT 324
Query: 310 KALAQDQLRALLAMTKAFDASIDIGV---YDGDTTQKDRMWLRDNARLLITNPDMLHMSI 366
KALAQDQ R+L ++ A +D G +DGDT + R +RD AR++ TNPDM+H+SI
Sbjct: 325 KALAQDQKRSLTELSLAL--GLDYGTVETFDGDTPFEKRCEIRDRARVVFTNPDMMHVSI 382
Query: 367 LPY----HGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALIL 422
LP + + + NLR +VV+DE H Y FG H +LIL
Sbjct: 383 LPKLDADRSSWRQFIQNLR-------------------YVVVDEIHYYNSLFGTHVSLIL 423
Query: 423 RRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL--STLELIQNDGSPCAQKLFVLW 480
RRL R+C + + F+ +AT +P H L L ++ L+ + G K F+ W
Sbjct: 424 RRLRRVCKLLGNNVVQFISCSATINSPLTHMSNLFGLDEGSITLVDSPGGAHGLKHFLAW 483
Query: 481 NPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCEL 540
N S TD R S + E L A MV+ +R I FCR R +CE
Sbjct: 484 NTPYI-------SPTDPRSGR------VSVVGEAISLLAHMVKENVRTIVFCRVRVICEQ 530
Query: 541 VLSYTRE-ILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDV 599
++ R+ ++E P L + + YR GY +DRR+IE+D F G L G+ ATNALELGID+
Sbjct: 531 IIKGVRQKFVDEGRPDLSNLVMSYRGGYSPQDRRKIEQDMFAGCLVGIVATNALELGIDI 590
Query: 600 GHIDVTLHLGFPGSIASLWQQAGRSGRRE--RPSLAVYVAFEGPLDQYFMKYPEKLFKSP 657
G +DV + GFP ++++L QQ+GR+GRR+ SL + + P+DQ++MK P+K+ P
Sbjct: 591 GQLDVCIVAGFPMTVSNLRQQSGRAGRRKDGSDSLTIVIGSGDPVDQFYMKNPDKMLTEP 650
Query: 658 IECCHIDA-QNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSL 716
E I+ N +LE H+ CAA E P+ L +D ++FG L T+K++ L D +
Sbjct: 651 TEALTIEPLTNLLLLESHIQCAASEFPIELTHDVEFFGPLLH----TVKDK--LIEDKT- 703
Query: 717 DSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNE--VLEEIEESKAFFQVYEGAV 774
D + P+ +SIR IE Y V+D+ N+ ++E +EES+ F +YEG +
Sbjct: 704 DETTFYHTSSRFSDNPAKDVSIRGIEENHYAVVDITHNKGHIIELLEESRVPFSLYEGGI 763
Query: 775 YMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDI---------HVSGGNNAYATK 825
+MHQG YLV ++++ ++ ++ ++ ++T+ RD+TD+ +S GN K
Sbjct: 764 FMHQGFPYLVVDVSVEERMGKVRRVNVDWYTRQRDFTDVDPVQSEEVKQLSYGNG--GGK 821
Query: 826 ISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQS 885
+S + +TTT FGF++L + I+ + VE+ P + ++ WI +PQS
Sbjct: 822 VSFGNI----------RITTTVFGFFKLDKRDRIL-EAVEVDHPSFVINTKGFWIDIPQS 870
Query: 886 VKAVVE-QNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNP-------HDSRYFPE 937
++E + S +HAA HAL++ P YV C D+ EC P +R P
Sbjct: 871 TMKLIEAKKLSLAGAIHAAEHALINFFPRYVVCGPGDVRTECKAPEKEFAKRQSTRRRPS 930
Query: 938 RILLYDR--HPGGTGVSKQ 954
R++ D+ GG+G+S++
Sbjct: 931 RLIFGDKVGGEGGSGLSQK 949
>gi|212543651|ref|XP_002151980.1| DEAD/DEAH box helicase, putative [Talaromyces marneffei ATCC 18224]
gi|210066887|gb|EEA20980.1| DEAD/DEAH box helicase, putative [Talaromyces marneffei ATCC 18224]
Length = 1200
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 257/715 (35%), Positives = 383/715 (53%), Gaps = 79/715 (11%)
Query: 231 AVLVEIPDALLDNTKSALKST-GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNL 289
AV ++ L N +AL +T GI++LY HQAE+I G +V+V+T TSSGKSL Y +
Sbjct: 351 AVFGDLNFQLSQNLVNALYNTKGITQLYLHQAEAINNLYEGHHVIVSTSTSSGKSLIYQI 410
Query: 290 PVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDA--SIDIGVYDGDTTQKDRMW 347
P+L L D +S +Y+FPTKALAQDQ R++ + + + + +DGDT +R
Sbjct: 411 PMLHELEKDPNSRGIYIFPTKALAQDQRRSMKELLNFMEGLEHVIVETFDGDTPMAERNT 470
Query: 348 LRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEA 407
+RD R++ TNPDMLH++ILP G + L NL+ FVV+DE
Sbjct: 471 IRDEGRIIFTNPDMLHVTILPQEGSWRTFLQNLK-------------------FVVVDEL 511
Query: 408 HAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQN 467
HAY G FG H A ++RRL R+C+ V F+ +AT ANP EH + + + L
Sbjct: 512 HAYNGLFGSHVAFVMRRLRRICAAVGNRYVRFISCSATVANPEEHFRAIFGVEDVRLTDF 571
Query: 468 DGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLR 527
DGSP +K FV WN T D + + I+E + LF ++V G+R
Sbjct: 572 DGSPAGRKEFVCWN-------------TPFKDPHDRTSGRGDSITEAARLFCQLVLRGVR 618
Query: 528 CIAFCRSRKLCELVLSYTREILEETA-PHLVDSICVYRAGYVAEDRRRIERDFFGGKLCG 586
I FCR RK CE+ L+ R + P + + + YR GY + RR+IE++ F GKL G
Sbjct: 619 VILFCRIRKQCEIALAAVRTEFQTLGRPEVANLVMGYRGGYSPQARRQIEKEMFDGKLMG 678
Query: 587 VAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYF 646
+ ATNALELG+D+G +D + LGFP SI++L QQ+GR+GRR + SL+V + P DQ++
Sbjct: 679 IVATNALELGVDIGSLDAVITLGFPFSISNLRQQSGRAGRRNKDSLSVLIGDGFPTDQHY 738
Query: 647 MKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITT--L 704
M P+++F P +D N VLE H+ CAA E PL D+ YFG L +T +
Sbjct: 739 MANPDEIFTKPNCELQVDLTNELVLEGHVQCAAFEMPLKPEEDKVYFGEQLEEFASTRLV 798
Query: 705 KNR-GYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNE--VLEEIE 761
K+ GY + PS +S+R +E + VID+ N VLEE+E
Sbjct: 799 KDSLGYYHCNDRF------------RPKPSDFVSLRDMEDSSFAVIDITHNRNIVLEEVE 846
Query: 762 ESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDI-------- 813
S+AFF +YEG ++MHQG TY+V+ELN ++A + + + T+ RDYTDI
Sbjct: 847 TSRAFFTIYEGGIFMHQGQTYIVRELNTEKRLARVVQVQVDWNTQQRDYTDIDPIETEAI 906
Query: 814 -HVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYS 872
H+S AY I + +GF+++ + G + D V++ P
Sbjct: 907 RHISPTAKAYYGIIQ---------------IHAVVYGFFKIDK-RGRVLDAVQVDNPPID 950
Query: 873 YESQAVWIQVPQSVKAVVE-QNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPEC 926
++ +W+ VP+ ++E + + + +HAA HA+L + P ++ D+ EC
Sbjct: 951 TFTKGMWLDVPKRAFEILESRRLNIAAAIHAAEHAVLSLFPTFIISLPGDVRTEC 1005
>gi|353236414|emb|CCA68409.1| related to helicases [Piriformospora indica DSM 11827]
Length = 997
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 258/722 (35%), Positives = 384/722 (53%), Gaps = 74/722 (10%)
Query: 249 KSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFP 308
K+ GIS Y HQA +I A GKN +V+T T+SGKS+ Y +P L L D SS+A+Y++P
Sbjct: 235 KARGISSFYVHQAAAINAVAEGKNCIVSTPTASGKSVIYQVPALRFLEADRSSTAIYIYP 294
Query: 309 TKALAQDQLRALLAMTKAFDA--SIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSI 366
TKALAQDQ AL + A I + YDGDT + R +R++A ++ TN DM+H SI
Sbjct: 295 TKALAQDQRLALDQLVHACPGLEDIQVATYDGDTPKDKRRGVRESASVIFTNFDMIHASI 354
Query: 367 LPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLC 426
LP Q+ + L NL+++A +DE H Y G G H A ILRRL
Sbjct: 355 LPQEEQWRKFLKNLKVVA-------------------VDELHYYSGPLGSHVAQILRRLR 395
Query: 427 RLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCL 486
R+C+ V ++ +AT + P +H + + +E+I DG+P K F++WNP
Sbjct: 396 RVCAAVGNRHVRYISCSATISQPLKHMKAIFGIEDIEVITEDGAPTGPKEFLIWNPP--- 452
Query: 487 RSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTR 546
+ D + SP ++ + L +++ G+R I FC+ RK CE+V+ R
Sbjct: 453 ----------LVDQQQPKTGRVSPFTQTTALMRFLMKRGVRTIVFCKIRKTCEIVMKILR 502
Query: 547 -EILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVT 605
E+ E ++ + YR GY +DRR+IE + F G L G+ ATNALELG+D+G++D
Sbjct: 503 TELTAEGRSDILQQVMAYRGGYSQDDRRKIEAEAFSGNLLGIVATNALELGVDIGNLDAV 562
Query: 606 LHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDA 665
+ GFP SIASL QQAGR+GRR R SLAV V DQ++ K P +LF+ + +D
Sbjct: 563 IIHGFPMSIASLRQQAGRAGRRARDSLAVLVVDTYGTDQHYAKNPNELFEKTTDNLFVDL 622
Query: 666 QNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEY 725
+N +LE HL CAA E P+++I D +YFGS L + R SD + Y
Sbjct: 623 ENRIILEAHLQCAAEEMPINVIEDVQYFGSQLGE---ICETRLKADSDGWYHPHPQYLPY 679
Query: 726 IGHEKMPSHTISIRAIESERYEVIDMQ------SNEVLEEIEESKAFFQVYEGAVYMHQG 779
PS +SIR + Y +ID+ +LEEIE+S+ F+ YEGA+++HQG
Sbjct: 680 ------PSKHVSIRGAKEGTYTIIDITRIARGGEARILEEIEDSRVLFEAYEGAIFIHQG 733
Query: 780 HTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQAL 839
T+LV+E++ S+ A + D+ + TK RDY + N +I + Q + A
Sbjct: 734 LTFLVQEISHDSRTARVIRTDVNWTTKPRDYMNYDAVRTN-----RIREVQGSPHRAYYG 788
Query: 840 ACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQS-VKAVVEQNFSFRS 898
VTT FG+++L G I D V+L P + E+ W+ VP++ ++ + ++ +
Sbjct: 789 RVDVTTVIFGYFKLRHGK--ILDAVDLESPPFERETTGFWLDVPKANLQLMKKKGLNPAE 846
Query: 899 GLHAASHALLHVVPIYVRCNFSD-LAPECPNPH-------DSRYFPERILLYDRHPGGTG 950
+HAA HA+L+ R + L EC P R P R++ +D P G+G
Sbjct: 847 AIHAACHAILN------RFDLGHALRTECKIPQKEYQAKPSQRKRPARLIFFD--PPGSG 898
Query: 951 VS 952
S
Sbjct: 899 GS 900
>gi|333917963|ref|YP_004491544.1| putative ATP-dependent helicase [Amycolicicoccus subflavus
DQS3-9A1]
gi|333480184|gb|AEF38744.1| Putative ATP-dependent helicase [Amycolicicoccus subflavus
DQS3-9A1]
Length = 816
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 269/758 (35%), Positives = 389/758 (51%), Gaps = 62/758 (8%)
Query: 205 EMVEHLRK----GIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQ 260
E++E L+ IG V I AR A V P+ + + + L +G+ + YSHQ
Sbjct: 34 ELIEALQPLSASAIGGSPAFTTV--IPARSAEYVAWPEWVYEPLRDELVFSGVVQPYSHQ 91
Query: 261 AESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL 320
+ + G NVVVAT T+SGKSL Y LP+L AL+ S++ALY+ PTKAL DQL+
Sbjct: 92 IRAADLAHRGTNVVVATGTASGKSLAYQLPILTALAESPSATALYLSPTKALGADQLKNA 151
Query: 321 LAMTKAFDASIDIG---VYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRIL 377
+T A A + +YDGDT R W+R++AR + TNPDMLH+ ILP H ++SR
Sbjct: 152 SRLTNAV-AGLSTAHPYLYDGDTPTDIRPWIRNHARWVCTNPDMLHIGILPGHERWSRF- 209
Query: 378 SNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDP 437
F +++VVIDE H Y+G FG A ++RRL R+ YG+ P
Sbjct: 210 ------------------FRGLKYVVIDECHHYRGVFGSGVAWVIRRLRRIAKR-YGATP 250
Query: 438 SFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDM 497
+F+ ++ATSANP L E+ + DGSP + LW P L S
Sbjct: 251 TFILASATSANPGAAATRLIGARCAEVTE-DGSPHGSRTVALWEP-----GYLPDSDDLP 304
Query: 498 DDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLV 557
+ TR +A +E + L A +++ G R + F RSR E R ILEE+ L
Sbjct: 305 ERTRRSAT------TEAAGLTAALIREGARTLTFVRSRAGAEFAAVTVRRILEESGTDLA 358
Query: 558 DSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASL 617
+ + YRAGY+AEDRRRIE + G L GV TNALELG+D+ +D + GFPG+ AS
Sbjct: 359 NRVTAYRAGYLAEDRRRIEAELAEGALLGVTTTNALELGVDIAGLDAVVIAGFPGTRASF 418
Query: 618 WQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVC 677
WQQAGR+GRR + ++ + VA + PLD Y + PE L P+E D N V HL+C
Sbjct: 419 WQQAGRAGRRGQGAVVILVARDDPLDSYLVHNPESLLGKPVEATVTDPDNPYVQRPHLLC 478
Query: 678 AALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTIS 737
AA EHPLS DE+ + +S+ + L + G L P +I P +S
Sbjct: 479 AASEHPLS---DEEADRADVSATLGELVSEGLLRRRPH-------GWFIAPGLNPHEEVS 528
Query: 738 IRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQ 797
IR + + + + + E+L ++ +A V+ GAV++HQG TY+V+EL L +AL +
Sbjct: 529 IRGGTAGQIAIAESTTGELLGTVDAGRAPSTVHPGAVHLHQGDTYVVEELELQEGLALVR 588
Query: 798 KADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGS 857
+ D + T +R +DI ++G I + LA T+ Y S
Sbjct: 589 RDDPGWSTTSRSVSDIRITG--------IRTRAVYGDITLGLADVEVTSQVVSYLRRLPS 640
Query: 858 GIIFDTVELYLPKYSYESQAV-WIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVR 916
G I DTVEL +P + + AV W P+ + A + LHAA HA + ++P+
Sbjct: 641 GEILDTVELDMPPSTLHTVAVMWTISPERLDAEMVSEPDMPGSLHAAEHAAIGLLPLVAT 700
Query: 917 CNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
+ D+ H P I +YD HPGG G++++
Sbjct: 701 ADRGDIGGVSTALHADTGLPT-IFIYDGHPGGAGIAER 737
>gi|336367765|gb|EGN96109.1| hypothetical protein SERLA73DRAFT_76106 [Serpula lacrymans var.
lacrymans S7.3]
Length = 1064
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 267/763 (34%), Positives = 408/763 (53%), Gaps = 81/763 (10%)
Query: 217 QGQMVHVEDISARKAVLVEIPDALLDNTKSAL-KSTGISKLYSHQAESIMASLAGKNVVV 275
+GQ+V ++R+A + L + + AL S I+ LYSHQ+ +I A K+++V
Sbjct: 270 KGQIVDRRIFASREAANGTLDPPLSETIQQALSNSRKITSLYSHQSSAINALSREKHIIV 329
Query: 276 ATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDA--SIDI 333
+T T+SGKS+ Y +P+L L D+ S+A++++PTKALAQDQ AL + + I +
Sbjct: 330 STSTASGKSVIYQVPLLRFLEDDIDSTAVFIYPTKALAQDQRSALEQLLWSCPGLEHIKV 389
Query: 334 GVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVY 393
YDGDT Q R +R+ A ++ TN DM+H SILP+ + R L ++L+A
Sbjct: 390 ATYDGDTPQDQRAGIRETASVIFTNFDMIHASILPHEELWRRFLKKIKLVA--------- 440
Query: 394 LIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHC 453
+DE H+Y FG H A ++RR R+C+ V FV +AT +NP H
Sbjct: 441 ----------VDELHSYSDLFGSHVAQVIRRFRRVCAAVGNRRMRFVSCSATISNPSRHM 490
Query: 454 MELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISE 513
+L L +E I DG+P +K F++WNP +D + SS +SE
Sbjct: 491 KDLFGLEDIEEITEDGAPSGRKDFLVWNPPP------------IDPMAPKLGRHSS-MSE 537
Query: 514 VSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTR-EILEETAPHLVDSICVYRAGYVAEDR 572
+ L +++ G+R I FC+ RK CEL + R ++ E +++ + YR GY EDR
Sbjct: 538 ATALMRFLMKRGVRVILFCKIRKACELAMKTLRTDLSAEGRLDILEKVMPYRGGYSQEDR 597
Query: 573 RRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSL 632
RRIE + F G L G+ ATNALELG+D+G +D + +GFP IA+L QQ GR+GRR R SL
Sbjct: 598 RRIENEAFSGNLLGIVATNALELGVDIGVLDAVIMMGFPYKIANLRQQTGRAGRRTRDSL 657
Query: 633 AVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKY 692
AV VA P+DQ+++ P LF PI+ ID ++ +LE HL CAA E PLS D+ Y
Sbjct: 658 AVLVADGLPIDQHYVNNPSDLFDKPIDDLIIDLESKVILEPHLQCAAQEMPLSK-EDDVY 716
Query: 693 FGSGL----SSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEV 748
FG L S + K+ G+ + P+ P+ +SIR E E+Y V
Sbjct: 717 FGPLLRELCDSSLIKTKD-GWYHTHPNF------------LPFPAKHVSIRGAEEEKYTV 763
Query: 749 IDMQ------SNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLK 802
+D+ +++EE+E S+A F++YEG V+MHQG T++V E++ SKIA +AD+
Sbjct: 764 VDITKVTAEGGPKIIEEVELSRALFEIYEGGVFMHQGLTFIVTEISHDSKIARVMRADVN 823
Query: 803 YFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFD 862
+ T RDYTDI + +I + + + A T FGF+++ + I D
Sbjct: 824 WITSPRDYTDI-----DAVQTYRIREIKGSPHRAFYGRVDAKTVVFGFFKIRNKT--ILD 876
Query: 863 TVELYLPKYSYESQAVWIQVPQSVKAVVE-QNFSFRSGLHAASHALLHVVPIYVRCNFSD 921
V++ P + ++ +WI VP+ V +++ + + +H+A HALL+ + +D
Sbjct: 877 VVDVDSPSWDRQATGLWIDVPRYVLNLMKSKGINAAEAIHSAQHALLNRFALA-----AD 931
Query: 922 LAPECPNPHD-------SRYFPERILLYDRHPGGTGVSKQVTD 957
L EC P R P R++ YD G +GVS + D
Sbjct: 932 LKTECKAPQKEYKATKTERKRPARLIFYD-SAGRSGVSSKAFD 973
>gi|388583849|gb|EIM24150.1| P-loop containing nucleoside triphosphate hydrolase protein
[Wallemia sebi CBS 633.66]
Length = 910
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 262/770 (34%), Positives = 401/770 (52%), Gaps = 73/770 (9%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKST-GISKLYSHQAES 263
+++E R + Q + + I AR+A+ + + + + L+ST + L++HQA++
Sbjct: 123 QVLEEFRYQDWYKDQSIFHKTIPARQALYSDWDLVIPEPIRRGLRSTLYVESLFAHQAQA 182
Query: 264 IMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAM 323
I + G NV+V+T T+SGKSL Y LP L + D S+A ++FPTKALAQDQ L +
Sbjct: 183 IQSLNEGNNVIVSTSTASGKSLIYTLPFLMSFYQDRESTAFFIFPTKALAQDQNTKLKDL 242
Query: 324 TKAFDA--SIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLR 381
++ + ++ + +DGDT R LRDNA LL TN D LH +ILP ++ R L+NLR
Sbjct: 243 LRSIEGMENVIVDTFDGDTPTDRRDDLRDNASLLFTNFDTLHHTILPKEDKWRRYLANLR 302
Query: 382 LIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVF 441
FVV+DE H Y G G H A ++RRL RLC+ + + F+
Sbjct: 303 -------------------FVVVDELHYYSGVQGTHVAFVMRRLRRLCAALGNVNIKFIS 343
Query: 442 STATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTR 501
++AT NP H L + + L+ DG+P QK F++W P + D
Sbjct: 344 TSATIGNPVRHFQTLFGVEKVTLVDVDGAPSGQKEFLIWKPA-------------LIDEL 390
Query: 502 NAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTR-EILEETAPHLVDSI 560
++P+ EVS L ++ G+R IAFC+ RK CE+++ + R E++ E LV I
Sbjct: 391 MPNGPRNNPMHEVSQLMRYLISRGVRTIAFCKHRKSCEMLMKHIRHELIAEGRMDLVSRI 450
Query: 561 CVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQ 620
YR GY ++RRRIE+D F G L G ATNALELGIDVG +D L LGFP S++SL QQ
Sbjct: 451 VSYRGGYNQDERRRIEKDLFSGYLLGAVATNALELGIDVGALDAVLCLGFPYSLSSLRQQ 510
Query: 621 AGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAAL 680
GR+GR R SLA+ +A PLD Y+ YPE++F P +D N + E HL CA+
Sbjct: 511 MGRAGRARRDSLAILIAESLPLDNYYSNYPEEIFTRPPTDLQVDIDNDAIFEPHLQCASD 570
Query: 681 EHPLSLIYDEKYFGSG----LSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTI 736
E P+SL+ D YFG +++ ++G+ DP L PS I
Sbjct: 571 ELPVSLVGDRVYFGKDQLERVAARSLDRDDQGWYHCDPRL------------RPYPSRFI 618
Query: 737 SIRAIESERYEVIDMQSN--EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIA 794
+R E Y+V ++ N ++E++EES+A F++YEG ++ + G +Y + E++ +KI
Sbjct: 619 KLRGNEESIYKVYNVYKNSESLIEQVEESRAVFELYEGGIFFNAGLSYQIYEVSHDTKIC 678
Query: 795 LCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQAL--ACTVTTTWFGFYR 852
+ ++ + TK RDYTD+ A K S T +A V+T FG+ +
Sbjct: 679 RANQVNVNFNTKPRDYTDVDPIETCRMRAIKGS-------TMRAFYGRIKVSTYVFGYLK 731
Query: 853 LWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVE-QNFSFRSGLHAASHALLHVV 911
L + D V+L P Y + W+ VP + ++ ++ + + AA HAL+ +
Sbjct: 732 LRDFK--VLDIVDLDTPPYVRLTNGFWLDVPANAMHIMNIKSINPAEAIQAAQHALMSLT 789
Query: 912 PIYVRCNFSDL-------APECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
P+Y D+ E R P R++LYD +G+S++
Sbjct: 790 PLYTMSAEGDIQTDEKKSVKEYQQKESKRKRPGRLILYDAVGKASGISQK 839
>gi|254570365|ref|XP_002492292.1| Putative DNA helicase [Komagataella pastoris GS115]
gi|238032090|emb|CAY70012.1| Putative DNA helicase [Komagataella pastoris GS115]
gi|328353700|emb|CCA40098.1| ATP-dependent RNA helicase [Komagataella pastoris CBS 7435]
Length = 1125
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 263/725 (36%), Positives = 396/725 (54%), Gaps = 57/725 (7%)
Query: 253 ISKLYSHQAESIMA-SLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLS-SSALYMFPTK 310
I+KLYSHQAE++ + + K+V+++T TSSGKSL Y +P+L+AL ++ALY+FPTK
Sbjct: 299 INKLYSHQAEALNSICVHKKHVIISTSTSSGKSLIYQIPLLKALQETNGLATALYVFPTK 358
Query: 311 ALAQDQLRALLAMTKAFDASID--IGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILP 368
ALAQDQ R+L + K+ + + + YDGDT + R+ +R++A ++ TNPDMLH SILP
Sbjct: 359 ALAQDQKRSLSELVKSIPSLFNTVLDTYDGDTEKSARLSIREHASVIFTNPDMLHSSILP 418
Query: 369 YHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRL 428
H Q+ L NL+ +VVIDE H YKG FG H ALI+RRL RL
Sbjct: 419 SHKQWVPFLRNLQ-------------------YVVIDELHMYKGLFGAHVALIMRRLRRL 459
Query: 429 CSHVYGSDP-SFVFSTATSANPREHCMELANL--STLELIQNDGSPCAQKLFVLWNPTSC 485
CS +YG+D F+ +AT P H + + S +LI DGSP K V WNP +
Sbjct: 460 CS-IYGNDSVQFISCSATLKYPMAHMHNIFGIDESDCQLIVKDGSPSGGKYVVTWNPPNL 518
Query: 486 LRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYT 545
+ L SQ D + TR S I + + + ++V +R I FC R++CEL++
Sbjct: 519 MSRTL--SQQDGNSTR------ESFIVQTAKVLVQLVLKNVRTICFCVVRRVCELLMKEV 570
Query: 546 REILEETAP-HLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDV 604
R L+ LV + YR GY DRR+IER+ F G L + +TNALELGID+G +D
Sbjct: 571 RSQLKSMDKLDLVTKVMSYRGGYSTSDRRKIEREMFNGNLKCIISTNALELGIDIGTLDC 630
Query: 605 TLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHID 664
+ GFP SIA+ QQ+GR+GRR + SL + V + P+++++M P++L + +D
Sbjct: 631 VVMCGFPLSIANFQQQSGRAGRRNKDSLTIVVGSDDPVNRHYMNNPQELISMEYQDLILD 690
Query: 665 AQNHKVLEQHLVCAALEHPL-SLIYDEKYFGSGLSSGI-TTLKNR-GYLSSDPSLDSSAK 721
N VLE HL CAA E P+ L ++ K+F I L NR +L + P A
Sbjct: 691 FSNTAVLESHLQCAAFEKPIDDLDWEAKWFSDYNQDQIEEILANRLDFLETSPDYPEPAY 750
Query: 722 IFEYIGHEKMPSHTISIRAIESERYEVIDMQSNE--VLEEIEESKAFFQVYEGAVYMHQG 779
PSH +SIRAIE E Y V+D+ +N V+EE+E S+ F +Y+G +++HQG
Sbjct: 751 HVSSRYLPWPPSH-VSIRAIEEENYAVVDITNNRNVVIEEVEASRTSFTLYDGGIFIHQG 809
Query: 780 HTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQAL 839
Y+V++ N K A ++ ++ + T RD+TD+ + + D
Sbjct: 810 LPYIVRDFNSDDKYAKVERVNVDWITSQRDFTDVDPVEVEKIRSLRNGSD----VPIYFG 865
Query: 840 ACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVE-QNFSFRS 898
T FGF++ G I D VE+ P +S+ +WI +P S + ++ +
Sbjct: 866 KIYTTIVVFGFFKK-NKIGEIIDAVEVNNPPIVIKSKGIWIDIPSSALDFIRMKHLNIAG 924
Query: 899 GLHAASHALLHVVPIYVRCNFSDLAPECPNP-------HDSRYFPERILLYDRHPG--GT 949
G+HAA HA+++++P+++ ++ EC P R P R++ YD G G+
Sbjct: 925 GIHAAQHAIMNILPLFILSGVDEIQTECKAPEKEFATRQTKRVRPARLIFYDAKGGQCGS 984
Query: 950 GVSKQ 954
G+S +
Sbjct: 985 GLSTK 989
>gi|149183185|ref|ZP_01861633.1| putative ATP dependent helicase [Bacillus sp. SG-1]
gi|148849120|gb|EDL63322.1| putative ATP dependent helicase [Bacillus sp. SG-1]
Length = 789
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 256/760 (33%), Positives = 415/760 (54%), Gaps = 69/760 (9%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
EM++ + +GQ+VH I ++A + ++P+ + K AL+ GI KLY+HQA +
Sbjct: 41 EMIDQFQHQSEHKGQIVHWHTIEEKQAQVKDLPERIHPKLKGALQKRGIEKLYTHQATAF 100
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
+++G++ T T+SGK+LCYNLPVL+++ + ++ ALY+FPTKALAQDQ + +
Sbjct: 101 DTAMSGRSFTAVTPTASGKTLCYNLPVLQSILENKNTRALYIFPTKALAQDQKSEINEII 160
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
DA+I+ YDGDT+ R +R ++ITNPDMLH +ILP+H ++ + NL
Sbjct: 161 AEADAAINSYTYDGDTSANIRQKVRKAGHIVITNPDMLHSAILPHHTKWVSLFENL---- 216
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
++VVIDE H Y+G FG H + ++RRL R+C YGSDP F+ ++A
Sbjct: 217 ---------------KYVVIDELHIYRGVFGSHVSNVIRRLRRICK-FYGSDPIFICTSA 260
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T ANP+E L + LI N+G+P +K FV +NP ++NK
Sbjct: 261 TIANPQELAEGLTE-KEMTLIDNNGAPSGRKHFVFYNP-----PIVNK----------PL 304
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILE-ETAPHLVDSICVY 563
N S EV + ++++ ++ I F RSR E++L+Y +E+++ + P SI Y
Sbjct: 305 NIRRSATLEVRDIAGSLLKNKIQTIVFARSRVRVEIILTYLQELVKSQLGPK---SIRGY 361
Query: 564 RAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGR 623
R GY+ RR IE+ G++ GV +TNALELG+D+G + V + G+PG+IAS WQQAGR
Sbjct: 362 RGGYLPTQRREIEKGLRNGEIYGVVSTNALELGVDIGQLQVCVMTGYPGTIASAWQQAGR 421
Query: 624 SGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHP 683
+GRR+ +L + VA PLDQY ++ P+ F++ E I+ N +L HL CAA E P
Sbjct: 422 AGRRQDEALVIMVASSSPLDQYIIENPQYFFENSPETARINPDNLIILIDHLKCAAYELP 481
Query: 684 LSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIES 743
+ D + FG G+ +L+ + L + + + Y ++ P+ IS+R+
Sbjct: 482 FT---DGEQFG-----GLDIEDILDFLAEERVLHKNGEKW-YWMNDSFPARNISLRSASQ 532
Query: 744 ERYEVIDMQSN----EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKA 799
E +ID QS+ +V+ E++ A +++ A+Y+HQG Y V+ L+ K A ++
Sbjct: 533 ENVIIID-QSDVANVKVIGEMDRFSAMTLLHDEAIYLHQGFQYQVELLDWEEKKAFVREV 591
Query: 800 DLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGI 859
D+ YFT + V + + A++ S+ T QA+A F + GSG
Sbjct: 592 DVDYFTDANLAVQLRVLEEDKSMASEASETAYGDVTVQAMATIFKKIKFDTHENI-GSGP 650
Query: 860 IFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNF 919
I +LP+ + + W+ + + + ++ GL + +L +VP++V C+
Sbjct: 651 I------HLPEEELHTSSTWVSLKKEINLSTDR---IEQGLIGLAQSLKAIVPLFVMCDP 701
Query: 920 SD--LAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTD 957
SD + P+ H+ R I +YDR+PGG G+S++V D
Sbjct: 702 SDVYVVPQVKAAHNER---PTIFIYDRYPGGVGLSEKVYD 738
>gi|336380476|gb|EGO21629.1| hypothetical protein SERLADRAFT_451651 [Serpula lacrymans var.
lacrymans S7.9]
Length = 907
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 267/763 (34%), Positives = 408/763 (53%), Gaps = 81/763 (10%)
Query: 217 QGQMVHVEDISARKAVLVEIPDALLDNTKSAL-KSTGISKLYSHQAESIMASLAGKNVVV 275
+GQ+V ++R+A + L + + AL S I+ LYSHQ+ +I A K+++V
Sbjct: 114 KGQIVDRRIFASREAANGTLDPPLSETIQQALSNSRKITSLYSHQSSAINALSREKHIIV 173
Query: 276 ATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDA--SIDI 333
+T T+SGKS+ Y +P+L L D+ S+A++++PTKALAQDQ AL + + I +
Sbjct: 174 STSTASGKSVIYQVPLLRFLEDDIDSTAVFIYPTKALAQDQRSALEQLLWSCPGLEHIKV 233
Query: 334 GVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVY 393
YDGDT Q R +R+ A ++ TN DM+H SILP+ + R L ++L+A
Sbjct: 234 ATYDGDTPQDQRAGIRETASVIFTNFDMIHASILPHEELWRRFLKKIKLVA--------- 284
Query: 394 LIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHC 453
+DE H+Y FG H A ++RR R+C+ V FV +AT +NP H
Sbjct: 285 ----------VDELHSYSDLFGSHVAQVIRRFRRVCAAVGNRRMRFVSCSATISNPSRHM 334
Query: 454 MELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISE 513
+L L +E I DG+P +K F++WNP +D + SS +SE
Sbjct: 335 KDLFGLEDIEEITEDGAPSGRKDFLVWNPPP------------IDPMAPKLGRHSS-MSE 381
Query: 514 VSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTR-EILEETAPHLVDSICVYRAGYVAEDR 572
+ L +++ G+R I FC+ RK CEL + R ++ E +++ + YR GY EDR
Sbjct: 382 ATALMRFLMKRGVRVILFCKIRKACELAMKTLRTDLSAEGRLDILEKVMPYRGGYSQEDR 441
Query: 573 RRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSL 632
RRIE + F G L G+ ATNALELG+D+G +D + +GFP IA+L QQ GR+GRR R SL
Sbjct: 442 RRIENEAFSGNLLGIVATNALELGVDIGVLDAVIMMGFPYKIANLRQQTGRAGRRTRDSL 501
Query: 633 AVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKY 692
AV VA P+DQ+++ P LF PI+ ID ++ +LE HL CAA E PLS D+ Y
Sbjct: 502 AVLVADGLPIDQHYVNNPSDLFDKPIDDLIIDLESKVILEPHLQCAAQEMPLSK-EDDVY 560
Query: 693 FGSGL----SSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEV 748
FG L S + K+ G+ + P+ P+ +SIR E E+Y V
Sbjct: 561 FGPLLRELCDSSLIKTKD-GWYHTHPNF------------LPFPAKHVSIRGAEEEKYTV 607
Query: 749 IDMQ------SNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLK 802
+D+ +++EE+E S+A F++YEG V+MHQG T++V E++ SKIA +AD+
Sbjct: 608 VDITKVTAEGGPKIIEEVELSRALFEIYEGGVFMHQGLTFIVTEISHDSKIARVMRADVN 667
Query: 803 YFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFD 862
+ T RDYTDI + +I + + + A T FGF+++ + I D
Sbjct: 668 WITSPRDYTDI-----DAVQTYRIREIKGSPHRAFYGRVDAKTVVFGFFKIRNKT--ILD 720
Query: 863 TVELYLPKYSYESQAVWIQVPQSVKAVVE-QNFSFRSGLHAASHALLHVVPIYVRCNFSD 921
V++ P + ++ +WI VP+ V +++ + + +H+A HALL+ + +D
Sbjct: 721 VVDVDSPSWDRQATGLWIDVPRYVLNLMKSKGINAAEAIHSAQHALLNRFALA-----AD 775
Query: 922 LAPECPNPHD-------SRYFPERILLYDRHPGGTGVSKQVTD 957
L EC P R P R++ YD G +GVS + D
Sbjct: 776 LKTECKAPQKEYKATKTERKRPARLIFYD-SAGRSGVSSKAFD 817
>gi|409082494|gb|EKM82852.1| hypothetical protein AGABI1DRAFT_125317 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1022
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 299/965 (30%), Positives = 479/965 (49%), Gaps = 103/965 (10%)
Query: 26 FVSIFSAHLQLRREKVILSHVKGALNQLEKFGVRVGIEDIENLAVLCPKVVQFA------ 79
F S+F+ L +S K + + ++ + + L P +V+F+
Sbjct: 31 FTSLFAVFKALNTVLAFISSKKQIATTFDAIRSPLELQAVAEIKALLPDIVKFSYIPRND 90
Query: 80 -----NDDMESKNHDDSIVIINVSTEERDKVEDNLGSGQKAISLSKIFNAMKKRERSFKT 134
N D++ K+ S + ST +V + G G + + L N K+ R+
Sbjct: 91 SAINENADLKGKHRAKSPDFVIPST----RVANARGEG-RILVLEFADNLRGKKSRNVGL 145
Query: 135 NLWEAVNL------LMCKLQKRVMSLSVEDLLTYVKERRTDVRG-NEVKRARRSQSSTSS 187
+ +A +L L+ + + + +V DL+ + V+ + R +
Sbjct: 146 SYQQAPSLTPAAMKLLIETRNDIFGQAVNDLILATMHQSDPVQMLQQAAREHVPVVPYAL 205
Query: 188 SHSFQRRCSDKSQLLPL--EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTK 245
+ C+ + P ++V+ + + Q++ + + AR+ + E+ +L +
Sbjct: 206 ITPSDQECATNTNARPSVNDLVQKIMDQDWYREQIIFRKTVDAREPLHGELGSSLSPSIT 265
Query: 246 SALK-STGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSAL 304
SAL S I Y+HQ+E+I A GK+VVV+T T+SGKSL Y +P+L+ L D+ + A+
Sbjct: 266 SALATSRSIGSFYAHQSEAIRALFEGKHVVVSTSTASGKSLIYQVPILKFLEDDIEAKAI 325
Query: 305 YMFPTKALAQDQLRALLAMTKAFDA--SIDIGVYDGDTTQKDRMWLRDNARLLITNPDML 362
++PTKAL QDQ +L M + I + YDGDT Q+ R +R+ + ++ TN D +
Sbjct: 326 CIYPTKALEQDQKASLETMIQNCPGLEHIRVSTYDGDTPQEQRPTIREESSVIFTNFDTI 385
Query: 363 HMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALIL 422
H SILP+ + L ++L VV+DE H Y G G H A I+
Sbjct: 386 HASILPHEDNWRSFLRQVKL-------------------VVVDELHYYSGLLGSHVAFIM 426
Query: 423 RRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLEL--IQNDGSPCAQKLFVLW 480
RR R+C+ V F+ TAT NP H ++ L E+ + DG+P +K F++W
Sbjct: 427 RRFRRICAAVGNRQIRFISCTATLGNPGAHMQKIFCLGEDEIRVVDTDGAPSGRKDFLVW 486
Query: 481 NPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCEL 540
NP + D N ISE + L ++Q G R + FC+ RK+CEL
Sbjct: 487 NPP-------------LIDNANKNLGRRGSISEATLLMRFLMQQGARVLLFCKIRKVCEL 533
Query: 541 VLSYTR-EILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDV 599
+ R ++ E ++ + YR GY EDRRRIE + F G+L G+ ATNALELGID+
Sbjct: 534 AMRAIRADLSNEGQLDILAKVKAYRGGYSQEDRRRIEEEAFSGQLLGIIATNALELGIDI 593
Query: 600 GHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIE 659
G +D+ + LGFP S+AS QQAGR+GRR R SLA++VA P+DQY++ + E+LF +E
Sbjct: 594 GALDIVIMLGFPMSVASFRQQAGRAGRRVRDSLAIFVADPFPIDQYYVNHSEELFSHAME 653
Query: 660 CCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITT--LKNR-GYLSSDPSL 716
ID ++ +LE HL CAA E P+ D++YFG + LK+R G+ + P+
Sbjct: 654 DLVIDTESPVILEAHLQCAAHEMPIHR-EDKQYFGPLMPDICEKKLLKDRDGWYQTHPNF 712
Query: 717 DSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQS---NEVLEEIEESKAFFQVYEGA 773
Y P +SIR + ERY VI +++ N +LEE+E S+A F+VYEG
Sbjct: 713 ------LPY------PPRFVSIRGAQEERYAVICVKTDAANIILEEVEVSRAMFEVYEGG 760
Query: 774 VYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTK 833
++MHQG Y+V E++ +KIA +A++ Y T RD+T++ + T+I +
Sbjct: 761 IFMHQGEAYIVTEVSHDNKIAKVIQANVNYHTSPRDFTNV-----DAVRTTRIRA--IGN 813
Query: 834 TTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVV-EQ 892
A V FGF+++ + I D VE+ P Y ++ WI VP+S+ ++ +
Sbjct: 814 HRAFYGMVNVEVKVFGFFKIRNNT--ILDAVEIDTPPYVCDTTGFWIDVPRSILELLRRK 871
Query: 893 NFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVS 952
+F+ +HAA HA L+ P+ DL EC + + I+ YD G GV+
Sbjct: 872 HFNLAEAIHAAQHAFLNQFPLS-----EDLRTEC------KAAEKEIIFYDSIGKGGGVA 920
Query: 953 KQVTD 957
+ D
Sbjct: 921 AKAFD 925
>gi|363750556|ref|XP_003645495.1| hypothetical protein Ecym_3178 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889129|gb|AET38678.1| Hypothetical protein Ecym_3178 [Eremothecium cymbalariae
DBVPG#7215]
Length = 1101
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 260/758 (34%), Positives = 408/758 (53%), Gaps = 85/758 (11%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
I ARKA ++ + + A + +LYSHQ++S+ A +G+NV++ T TSSGKSL
Sbjct: 274 IPARKAKYGDLNFKMSNEIYQAFEH---DRLYSHQSDSLNAIHSGENVIITTSTSSGKSL 330
Query: 286 CYNLPVLEALSHDLSSSALYMFPTKALAQDQLRA---LLAMTKAFDASIDIGVYDGDTTQ 342
Y L +E LS D +S+ +Y+FPTKALAQDQ R+ LLA ++ + YDGDT+Q
Sbjct: 331 IYQLSAMELLSKDHNSTFMYIFPTKALAQDQKRSFQQLLAKIPEL-CNVIVDTYDGDTSQ 389
Query: 343 KDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFV 402
+DR ++R NAR++ TNPD++H SILP H + L +LRL V
Sbjct: 390 QDRSFIRKNARVIFTNPDIIHTSILPNHPNWRHFLMHLRL-------------------V 430
Query: 403 VIDEAHAYKGAFGCHTALILRRLCRLCSHVY-GSDPSFVFSTATSANPREHCMELANLST 461
V+DE H YKG FG H +L++RRL R+ Y + F+ +AT P +H + +
Sbjct: 431 VVDELHIYKGLFGSHVSLVMRRLLRIVKGFYENAKLQFISCSATLKRPVDHMKHIFGIDQ 490
Query: 462 LELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEM 521
+ LI DGSP K V+WNP +L++ Q K + I E + + ++
Sbjct: 491 VTLIDKDGSPNGDKYLVIWNP-----PILSQHQ----------RKRQNFIHESAKILVQL 535
Query: 522 VQHGLRCIAFCRSRKLCELVLSYTREILEETAP-HLVDSICVYRAGYVAEDRRRIERDFF 580
+ + +R IAFC R++CEL++ R I +E L++ + YR GY DRR+IE++ F
Sbjct: 536 ILNNVRTIAFCYVRRVCELLMKEVRNIFKEMGRLDLINEVMSYRGGYSVTDRRKIEQEMF 595
Query: 581 GGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEG 640
G L V ATNALELGID+G +D L GFP S+A+ QQ+GR+GRR SL + VA +
Sbjct: 596 HGGLRAVIATNALELGIDIGGLDAVLMCGFPLSLANFHQQSGRAGRRNNDSLTIVVASDS 655
Query: 641 PLDQYFMKYPEKLFKS----PIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSG 696
P+DQ+++ + E L +S + +D N +LE H+ CAA E P+ L D KYF +
Sbjct: 656 PVDQHYVLHSEVLLESNNSDAYQELALDFDNVMILEGHIQCAAFELPIRLERDSKYFINH 715
Query: 697 LSS----GITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQ 752
L + + KN GY SS+ L AK+ +S+R + + + V+D+
Sbjct: 716 LEAICKKRLQCDKN-GYHSSNKYLPWPAKL-------------VSLRGVAEDHFAVVDIT 761
Query: 753 S--NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDY 810
+ N V+EE+E S+ F +YEG +++HQG+ YL+KE N+ K A + D+ + T RD+
Sbjct: 762 NGKNMVIEEVEASRTTFTLYEGGIFIHQGYPYLIKEFNVDEKYAKVLRVDVDWLTSQRDF 821
Query: 811 TDIHVSGGNNAYATKISKDQLTKTTAQALACTVT-TTWFGFYRLWRGSGIIFDTVELYLP 869
TD+ + ++ + + T FGF+++ + + I+ D VE + P
Sbjct: 822 TDV------DPQEIEMVRSLIDSDVPIYFGRIQTKMVVFGFFKIDKYNRIL-DAVETHNP 874
Query: 870 KYSYESQAVWIQVPQ-SVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPN 928
S+ +WI +P ++ + E + G+HAA HA++ ++P ++ ++ EC
Sbjct: 875 PVIINSKGLWINIPNIALDLIKEHQLNMAGGIHAAQHAIIGLLPRFIVAGVDEINTECKA 934
Query: 929 P-------HDSRYFPERILLYDRHPG--GTGVSKQVTD 957
P R P R++ YD G G+G+S ++ D
Sbjct: 935 PEKEFAERQTKRIRPARLIFYDSKGGKHGSGLSVKMFD 972
>gi|367014563|ref|XP_003681781.1| hypothetical protein TDEL_0E03270 [Torulaspora delbrueckii]
gi|359749442|emb|CCE92570.1| hypothetical protein TDEL_0E03270 [Torulaspora delbrueckii]
Length = 1079
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 249/721 (34%), Positives = 388/721 (53%), Gaps = 75/721 (10%)
Query: 255 KLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQ 314
+ Y HQA +I A G+N ++AT TSSGKSL Y L ++ L D S+ +Y+FPTKALAQ
Sbjct: 289 RFYVHQANAINAIHNGENTIIATSTSSGKSLIYQLSAIDHLLKDPESTFMYIFPTKALAQ 348
Query: 315 DQLRALLAMTKAFD--ASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQ 372
DQ R+ +A+ +++ + YDGDT + R+++R +AR++ TNPDM+H S++P H
Sbjct: 349 DQKRSFVALASRIPELSNVIVDTYDGDTEPEKRVFIRKHARIIFTNPDMIHASLMPNHPN 408
Query: 373 FSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHV 432
+ L NL+L VV+DE H YKG FG H AL++RRL RLC +
Sbjct: 409 WRHFLYNLKL-------------------VVVDELHTYKGLFGSHVALVMRRLMRLCRYF 449
Query: 433 YGSDP-SFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLN 491
Y ++ FV +AT P EH + + ++ LI DG+P K V+WNP +
Sbjct: 450 YENEKVQFVSCSATLKQPAEHSKHIFGIDSVSLINEDGAPQGMKHLVIWNPPTL------ 503
Query: 492 KSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEE 551
SQ + K + I E + + +++ +R IAFC R++CEL++ R +LEE
Sbjct: 504 -SQHE--------RKRENFIQESAKILIQLIMKNVRTIAFCYVRRVCELLMKEVRRLLEE 554
Query: 552 TA-PHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGF 610
L+ I YR GY A DRR+IER+ F G L V +TNALELG+D+G +D L GF
Sbjct: 555 LGREDLLTEIMSYRGGYAASDRRKIERELFHGNLRAVISTNALELGVDIGGLDCVLMCGF 614
Query: 611 PGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCH----IDAQ 666
P S+A+ QQ+GR+GRR + SL + VA + PLDQ+++ +P+ L S + +D
Sbjct: 615 PLSMANFHQQSGRAGRRNKDSLTLVVASDAPLDQHYVAHPQILLDSTDPESYQELVLDFD 674
Query: 667 NHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYI 726
N +LE H+ CAA E P+++ D++YF I R +SD Y
Sbjct: 675 NMLILEGHIQCAAFELPINIDRDKEYFKEVHLKKIC--HERLNYNSDG----------YH 722
Query: 727 GHEKM---PSHTISIRAIESERYEVIDMQS--NEVLEEIEESKAFFQVYEGAVYMHQGHT 781
H + P+ +S+R E +++ V+D+ + N ++EE+E S+ F +Y+G +++HQG
Sbjct: 723 THNRFLPWPAKMVSLRGGEEDQFAVVDITNGRNRIIEEVETSRTSFTLYDGGIFIHQGCP 782
Query: 782 YLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALAC 841
YLVKE N + A Q+ ++ + T RD+TD+ + K S T
Sbjct: 783 YLVKEFNPDERYATVQRVNVDWVTSQRDFTDVDPDEIELVRSLKAS-----DTPVYFGKI 837
Query: 842 TVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVE-QNFSFRSGL 900
+T FGF+++ + II D VE + P +++ +WI +P+ + E ++ S G+
Sbjct: 838 RITIIVFGFFKMDKYKRII-DAVETHNPPVLIDAKGLWIDIPKRALEICESKSLSLAGGV 896
Query: 901 HAASHALLHVVPIYVRCNFSDLAPECPNPHDS-------RYFPERILLYDRHPG--GTGV 951
H+A H ++ +P +V ++ EC P R P R++ YD H G G+G+
Sbjct: 897 HSAQHGIMGQLPRFVVAGVDEIQTECKAPEKEFAERQTKRKRPARLIFYDSHGGKYGSGL 956
Query: 952 S 952
S
Sbjct: 957 S 957
>gi|395333332|gb|EJF65709.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dichomitus squalens LYAD-421 SS1]
Length = 1073
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 266/766 (34%), Positives = 413/766 (53%), Gaps = 82/766 (10%)
Query: 217 QGQMVHVEDISARKAVLVEIPDALLDNTKSALK-STGISKLYSHQAESIMASLAGKNVVV 275
Q Q+ + AR+ L + L D AL+ S I+ LY+HQ +I A K+V+V
Sbjct: 273 QEQIQYRRIFEARQGQLATLEPPLSDTISQALRDSRKITSLYTHQVSAINALARHKHVIV 332
Query: 276 ATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDA--SIDI 333
+T T+SGKS+ Y +P L+ L D S+A++++PTKALAQDQ AL + + + +
Sbjct: 333 STSTASGKSVIYQVPFLQFLEADPDSTAIFVYPTKALAQDQRAALEQLLYSCPGLNHVKV 392
Query: 334 GVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVY 393
YDGDT Q+ R +RD + ++ TN DMLH SILP+ Q+ R L NL+L+A
Sbjct: 393 STYDGDTPQELRAGIRDTSSVIFTNFDMLHASILPHEDQWRRFLKNLKLVA--------- 443
Query: 394 LIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHC 453
IDE H Y G FG H A ++RRL R+C+ V FV +AT + PR+H
Sbjct: 444 ----------IDELHYYSGIFGSHVARVMRRLRRVCAAVGNRRARFVSCSATISKPRQHM 493
Query: 454 MELANL--STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPI 511
++ + S +E + DG+P +K F++WNP L+ ++ S + +
Sbjct: 494 QNISGIEESKIEAVTEDGAPAGRKDFLVWNPP--LKDPMDHSLGRLHS-----------M 540
Query: 512 SEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LVDSICVYRAGYVAE 570
+E + L ++ G+R I FC+ RK CEL + R+ L H +++ + YR GY E
Sbjct: 541 TEATRLMRFLMARGVRVILFCKIRKSCELAMKTLRQELSADGRHDILERVMSYRGGYSQE 600
Query: 571 DRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFP-GSIASLWQQAGRSGRRER 629
DRRRIER+ F G L G+ ATNALELG+D+G +D + LGFP G +AS QQ GR+GRR R
Sbjct: 601 DRRRIEREAFSGNLLGIVATNALELGVDIGVLDAVIMLGFPIGGLASFRQQTGRAGRRAR 660
Query: 630 PSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYD 689
+L++ VA P+DQ+++ +PE+LF + ID ++ +LE HL CAA E P++ D
Sbjct: 661 DALSILVADALPVDQHYVNHPEELFDRATDELMIDLESKIILEAHLQCAAHEMPIT-AED 719
Query: 690 EKYFGSGL---SSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERY 746
E YFG + T G+ + P Y+ + PS +SIR E E+Y
Sbjct: 720 EVYFGGSMVEICEAKLTKDKEGWYHTHP---------RYLPY---PSKHVSIRGAEEEKY 767
Query: 747 EVIDMQ-------SNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKA 799
V+D+ + +LEEIE S+A F++YEGAV++HQG T+LV+E++ SK+A ++
Sbjct: 768 SVVDVTRIGKPGGTAHILEEIELSRALFEIYEGAVFIHQGLTFLVQEVSHDSKMAKLVRS 827
Query: 800 DLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGI 859
D+ + T+ RD+T++ + T+I + + + A + T +G+++L R I
Sbjct: 828 DVNWITEPRDFTNV-----DAIQTTRIREIKGSPHRAFYGRIELFTLVYGYFKL-RNKAI 881
Query: 860 IFDTVELYLPKYSYESQAVWIQVPQSV-KAVVEQNFSFRSGLHAASHALLHVVPIYVRCN 918
I D V+L P + E+ +W+ VP+ V + + + + +HAA HA L+ +
Sbjct: 882 I-DAVDLDTPAWQRETTGLWLDVPKPVLQMMYDHGINPAEAIHAACHAFLNRFALA---- 936
Query: 919 FSDLAPECPNPH-------DSRYFPERILLYDRHPGGTGVSKQVTD 957
+DL EC P R P R++ Y+ GV+ + D
Sbjct: 937 -ADLRTECKVPEKEYKASASQRKRPARLIFYEPSGKTGGVAVKAFD 981
>gi|408381549|ref|ZP_11179098.1| EIF-4a family ATP-dependent RNA helicase [Methanobacterium
formicicum DSM 3637]
gi|407816016|gb|EKF86579.1| EIF-4a family ATP-dependent RNA helicase [Methanobacterium
formicicum DSM 3637]
Length = 938
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 255/745 (34%), Positives = 398/745 (53%), Gaps = 75/745 (10%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
H+E ++ RKA E+ D L ++ + LK + I +LY HQ + G+N+++ T T+S
Sbjct: 21 HIETLNPRKAEYGEVED-LPESIQKYLKDSQI-RLYKHQVRATELIRNGENILITTPTAS 78
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTT 341
GK+L +NLP++E ++ D ++ALY++P KALA DQL L + + + I+ +YDGDT
Sbjct: 79 GKTLAFNLPIMETMARDEEATALYIYPAKALANDQLNVLKHLESSCNLKINPNIYDGDTP 138
Query: 342 QKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRF 401
+ R W+++N+RL++TNP MLH+ I+ ++ Q++R NL+ +
Sbjct: 139 RNIRPWIKENSRLILTNPYMLHL-IMGWNHQWTRFYKNLK-------------------Y 178
Query: 402 VVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLST 461
VVIDEAH Y+G FG + A ++RRL R+C+H YGS P F+ S+AT ANP E L S
Sbjct: 179 VVIDEAHHYRGVFGSNVAFLIRRLRRICNH-YGSYPQFILSSATLANPDEFSRNLVGTSF 237
Query: 462 LELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEM 521
E I D SP +K F+L+NP + + S E S LF M
Sbjct: 238 QE-INEDTSPSGKKHFILYNPYARWGDL-------------------STHQETSNLFQLM 277
Query: 522 VQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFG 581
V + L+ + F SRK+ EL+ + + L + P LV+ I YR+GY+A +RR+IE
Sbjct: 278 VLNDLQTLCFTISRKMAELIAMWAKRELNQHNPQLVNRITAYRSGYLASERRKIENGLKT 337
Query: 582 GKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGP 641
G L GV TNALELG+D+G +D + G+PG++ S WQQAGR+GR E S+ V VAFE
Sbjct: 338 GNLVGVTCTNALELGMDIGSLDGVIISGYPGTMISTWQQAGRAGRGENESMVVMVAFENA 397
Query: 642 LDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGI 701
LDQY MK+PE LF E ID N K+ HL+CA E PL++ EKYF + + +
Sbjct: 398 LDQYLMKHPEFLFHKSHENAVIDLHNKKITNGHLLCATKELPLTVDEFEKYFDADFDA-L 456
Query: 702 TTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIE 761
L+ +G L + Y G ++ P+ IS+ I S+ ++V Q ++E ++
Sbjct: 457 EDLRQQGLLK------ETGVGLVYTGRQE-PAMNISLDQISSDNFKVFHDQ--HLMETMD 507
Query: 762 ESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNA 821
A+ + +EGAV ++QG TY V NL+ + +K D+ Y T+ D+ +
Sbjct: 508 RQHAYSEAHEGAVLINQGETYTVDSFNLAKRTINVKKMDVDYHTQALKNVDVSI------ 561
Query: 822 YATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQ 881
+++ ++ VT ++ + + G + T L LP Y ++ +W
Sbjct: 562 -VKELNTREIGNFRVSFGEVKVTQDFYKYKAMIYGKTL--STHNLDLPPLKYHTRGLWFT 618
Query: 882 VPQSVKAVVEQNFS----FRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPE 937
+P V +E F+ F LH A HAL+ + P+ V C+ D+ N Y PE
Sbjct: 619 IPGVVADSLENIFTKKDAFAGSLHGAEHALISMFPLLVLCDRFDIGGLSTN-----YHPE 673
Query: 938 ----RILLYDRHPGGTGVSKQVTDM 958
I +YD + GG G++++ ++
Sbjct: 674 TGKATIFIYDAYEGGIGLAEKAVEV 698
>gi|302507130|ref|XP_003015526.1| hypothetical protein ARB_05837 [Arthroderma benhamiae CBS 112371]
gi|291179094|gb|EFE34881.1| hypothetical protein ARB_05837 [Arthroderma benhamiae CBS 112371]
Length = 1129
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 259/709 (36%), Positives = 391/709 (55%), Gaps = 59/709 (8%)
Query: 228 ARKAVLVEIPDALLDNTKSALKST-GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLC 286
A+K ++ L N +AL +T GI++ YSHQA++I G NV+V+T TSSGKSL
Sbjct: 296 AKKPAFGDLDFLLSQNLVNALYNTRGITQFYSHQAKAINDLHDGHNVIVSTSTSSGKSLI 355
Query: 287 YNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDA--SIDIGVYDGDTTQKD 344
Y +P+L L + S +Y+FPTKALAQDQ R++L M K + I + +DGDT
Sbjct: 356 YQVPMLHELEKNPHSRGMYIFPTKALAQDQRRSMLDMLKYMEGLEHIMVETFDGDTPMAS 415
Query: 345 RMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVI 404
R +R+ AR++ TNPD+LH++ILP + + L +L+ +VV+
Sbjct: 416 RNAIREEARIIFTNPDILHVTILPNESLWRKFLKHLK-------------------YVVV 456
Query: 405 DEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLEL 464
DE H Y G FG H ALI+RRL R+C+ + SD F+ +AT ANP EH + + ++L
Sbjct: 457 DELHVYNGLFGTHVALIMRRLRRICASIGNSDVKFISCSATVANPEEHMKAIFGIDEVKL 516
Query: 465 IQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQH 524
DGSP +K F+ W QT D +A++ S I E + LF +++
Sbjct: 517 TDIDGSPSGRKEFLCW-------------QTPYKDPNDASSGRGSGIDESAKLFCQLILR 563
Query: 525 GLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICV-YRAGYVAEDRRRIERDFFGGK 583
G+R IAFCR RK CE +L+ ++ V + YR GY +DRR+IER+ F GK
Sbjct: 564 GVRVIAFCRIRKQCEYLLNAVKDEFRTLNRSDVSRFVMGYRGGYSPQDRRKIEREMFEGK 623
Query: 584 LCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLD 643
L G+ ATNALELG+D+G +D + FP SI++ QQ+GR+GRR + SL++ VA + D
Sbjct: 624 LLGIVATNALELGVDIGTLDAVITHEFPHSISNFRQQSGRAGRRNKDSLSILVASQSAAD 683
Query: 644 QYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITT 703
Q+++ P+ LF P +D +N VLE H+ CAA E P+ D YFG L
Sbjct: 684 QHYINNPDDLFTKPNCGLLVDLENELVLEGHVQCAAFEMPIRPENDSAYFGPQL----VH 739
Query: 704 LKNRGYLSSDPSLDSSAKIFEYIGHEKM---PSHTISIRAIESERYEVIDMQSNE--VLE 758
L + + D Y HE+ PS +SIR+I+ Y +ID +N V+E
Sbjct: 740 LADTRLIRDDMGF--------YHCHERFRPNPSKFVSIRSIDEGNYAIIDTTNNRNVVIE 791
Query: 759 EIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGG 818
EI++++ FF VYEGA+Y HQG+TYLVKELN + + A +A + + T+ RD+T+ V
Sbjct: 792 EIDDARVFFTVYEGAIYFHQGNTYLVKELNTTKRFARVVRAHVDWITEQRDFTN--VDPI 849
Query: 819 NNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAV 878
+IS+ L+ A + T +G+++ + G I D V L P S+
Sbjct: 850 ETEAIRRISR--LSDYRAFFGKIAIHTLVYGYFKKDK-KGRILDAVALDTPPIDKMSKGF 906
Query: 879 WIQVPQSVKAVV-EQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPEC 926
W+ VP++ ++ N + + +HAA HA++ ++P ++ + D+ EC
Sbjct: 907 WLDVPKTALEILSSHNLNAAAAIHAAEHAIMSLLPTFLISSPGDIRTEC 955
>gi|322693464|gb|EFY85323.1| DEAD/DEAH box helicase, putative [Metarhizium acridum CQMa 102]
Length = 1675
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 269/778 (34%), Positives = 419/778 (53%), Gaps = 79/778 (10%)
Query: 205 EMVEHLRKGIGSQGQMVHVED--ISARKAVLVEIPDALLDNTKSAL-KSTGISKLYSHQA 261
E+V+ L++ GQ+V +++A+ ++ L + +AL + GI++ Y+HQA
Sbjct: 851 EIVQELKESSWYTGQIVPDGHRVFESQEAIYGDLGFLLTQDLVNALYNAKGITRFYAHQA 910
Query: 262 ESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQ---LR 318
E++ GK+VVVAT TSSGKSL Y LPVL AL D +S A+Y+FPTKALAQDQ L+
Sbjct: 911 EALNHLHEGKSVVVATSTSSGKSLIYQLPVLYALEKDYNSRAMYIFPTKALAQDQKRSLK 970
Query: 319 ALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILS 378
L+ +A++ + +DGDT +R +R+ AR++ TNPDMLH++ILP ++ L
Sbjct: 971 ELMVYMPGLEATV-VETFDGDTPMSERTTIREEARIIFTNPDMLHVTILPQEERWRSFLK 1029
Query: 379 NLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPS 438
+L+ +VV+DE H Y G G H A I+RRL R+C+ V
Sbjct: 1030 HLK-------------------YVVVDELHYYNGQLGSHVAFIMRRLRRICAAVGNRRVR 1070
Query: 439 FVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMD 498
F+ +AT ANP+EH + + + LI DGSP +K F+ WN T
Sbjct: 1071 FISCSATVANPKEHFETIFGIKNVALIDYDGSPSGRKEFLCWN-------------TPYK 1117
Query: 499 DTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETA-PHLV 557
D + A+ + E + LF ++ G+R IAFCR R CE++++ ++ LE P +
Sbjct: 1118 DPGDPASGRGNAKLECARLFCALLLRGVRIIAFCRVRAQCEILVNAIKQELESLGRPECI 1177
Query: 558 DSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASL 617
+ + YR GY A DRRRIE + F GKL G+ +T ALELGID+G +D + GFP +IA+L
Sbjct: 1178 NLVMGYRGGYTAADRRRIESEMFEGKLLGIVSTTALELGIDIGTLDSVMSWGFPYTIANL 1237
Query: 618 WQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVC 677
QQ+GR+GRR + SL++ V P DQ++M+ P++LF P +D N V E H+ C
Sbjct: 1238 RQQSGRAGRRNKDSLSILVGDGYPTDQHYMQNPDELFTKPNCELQVDLSNMLVREGHIQC 1297
Query: 678 AALEHPLSLIYDEKYFGSGLSSGITT---LKNRGYLSSDPSLDSSAKIFEYIGHEKM--- 731
AA E P+ D +YFG+ +S T GY Y H++
Sbjct: 1298 AAYELPIRPDQDAQYFGADISDVCKTRLIQDEMGY---------------YHCHDRFRPQ 1342
Query: 732 PSHTISIRAIESERYEVIDMQS--NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNL 789
PS ++IR E E + +ID+ + N VLEE+E S+A F +Y+GA+++HQG+TYLV++
Sbjct: 1343 PSRHVAIRDTEDEHFAIIDITNGRNTVLEELEASRATFTIYDGAIFLHQGNTYLVRDFLP 1402
Query: 790 SSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFG 849
K+A +K + + T RD+TDI + I K + + A + FG
Sbjct: 1403 DRKMAKVEKVKVDWTTTQRDFTDI-----DPTETEAIRKISCSLSQAYYGIVRIQQNVFG 1457
Query: 850 FYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVE-QNFSFRSGLHAASHALL 908
++++ R G + D V++ P S+ +W+ VP++ +++ + + + +HAA HA++
Sbjct: 1458 YFKVDR-KGRVLDAVQVDNPPVIRYSKGMWLDVPKTALDILQDRRLNSAAAIHAAEHAVM 1516
Query: 909 HVVPIYVRCNFSDLAPECP-------NPHDSRYFPERILLYDRHPG--GTGVSKQVTD 957
++P +V D+ EC R P R+ YD G G+G+S + D
Sbjct: 1517 SLLPTFVISMPEDVRTECKVALKEFSKKESQRKRPARLTFYDAKGGASGSGISTKAFD 1574
>gi|50305437|ref|XP_452678.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641811|emb|CAH01529.1| KLLA0C10736p [Kluyveromyces lactis]
Length = 1079
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 290/922 (31%), Positives = 462/922 (50%), Gaps = 109/922 (11%)
Query: 74 KVVQFANDDMESKNHDDSIVIINVSTEE---RDKVEDN------------LGSGQKAISL 118
KV F N + K++D I ++ E+ D+VED+ + + +K +
Sbjct: 95 KVFNFKNGGYQQKDND----IFDLKAEDHQVNDEVEDSQVLVFQFKDGNMMNTWKKKTNK 150
Query: 119 SKI------FNAMKKRERSFKTNLWEAVN--LLMCKLQKRVMSLSVEDLLTYVKERRTDV 170
S + +AMKK K + A+N + CKL+ + +E L ++ D
Sbjct: 151 SDMNAPEFTTDAMKKMISRRKLSFESALNRFIFNCKLEGKTPMEELERLSAARVPKKKDF 210
Query: 171 RGNEVKRARRSQSSTSSSHSFQRRCSDKSQLLPLEMVEHLRKGIGSQGQMVHVEDISARK 230
+ ++ +++ + + D +P+ ++E ++ Q+ + I R
Sbjct: 211 M-DPIESMLQAKKNIETE--VVNEAGDSRPTIPI-LLEKIKHSSIYNDQITNSYIIPERI 266
Query: 231 AVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLP 290
A E+ AL AL+ YSHQA +I G+NV++ T TSSGKSL Y L
Sbjct: 267 AKYGELEFALSPEVYQALE---YKDFYSHQAAAINCIHKGENVIITTSTSSGKSLIYQLS 323
Query: 291 VLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFD--ASIDIGVYDGDTTQKDRMWL 348
++AL D S+ +Y+FPTKALAQDQ R+ + + + + YDGDT Q+ R +
Sbjct: 324 AIDALLKDPHSTFMYIFPTKALAQDQKRSFQKLLSKIPELSHVIVDTYDGDTEQQARAGI 383
Query: 349 RDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAH 408
R +AR++ TNPDM+H SILP H + L NLR +VV+DE H
Sbjct: 384 RISARVIFTNPDMIHTSILPNHPNWKMFLDNLR-------------------YVVVDELH 424
Query: 409 AYKGAFGCHTALILRRLCRLCSHVYGSDP-SFVFSTATSANPREHCMELANLSTLELIQN 467
YKG FG H AL++RRL R+ Y ++ F+ +AT +P +H ++ + + LI
Sbjct: 425 IYKGFFGSHVALVMRRLVRIVKGFYKNEKLQFISCSATLKHPIQHMQDIFGIEQVTLINE 484
Query: 468 DGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLR 527
DGSP K V+WNP SQ D K + I E + + +++ +R
Sbjct: 485 DGSPRGTKHLVVWNPPKL-------SQHD--------RKRENFIGESAKILVQLIIQNVR 529
Query: 528 CIAFCRSRKLCELVLSYTREILEETAP-HLVDSICVYRAGYVAEDRRRIERDFFGGKLCG 586
IAFC R++CEL++ R IL++ L++ + YR GY A DRR+IE++ F G L
Sbjct: 530 TIAFCYVRRVCELLMKEVRIILQDMGKLQLINEVMSYRGGYSASDRRKIEQEMFHGNLRA 589
Query: 587 VAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYF 646
V +TNALELGID+G +D L GFP S+A+ QQ+GR+GRR R SL + VA + P+DQ++
Sbjct: 590 VVSTNALELGIDIGGLDSVLMCGFPLSLANFHQQSGRAGRRNRDSLTLVVASDSPVDQHY 649
Query: 647 MKYPEKLFK----SPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGI- 701
+ + E L + + +D N + E H+ CAA E P+ + D +YF + I
Sbjct: 650 VAHSESLLEVDNPESYQDLVLDFDNMLMFESHIQCAAFELPIDIDRDSQYFDRKNLTTIC 709
Query: 702 -TTLKN--RGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQS--NEV 756
T L++ GY ++D L PS IS+R E + + V+D+ + N +
Sbjct: 710 ETRLQHDANGYHANDRFL-------------PWPSALISLRGSEEDIFAVVDITNGRNII 756
Query: 757 LEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVS 816
+EE+E S+ F +Y+G +++HQG+ YLVKE N K A Q+ D+ + T RD+TD+
Sbjct: 757 IEEVEASRTSFTLYDGGIFIHQGYPYLVKEFNPDDKYAKVQRVDVDWTTSQRDFTDV--- 813
Query: 817 GGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQ 876
+ +I Q + A T FGF+++ + G I D VE + P S+
Sbjct: 814 --DPEEIEQIRSMQNSDVPAYYGKIRTTIIVFGFFKIDK-QGRILDAVETHNPPVIINSK 870
Query: 877 AVWIQVPQSVKAVVE-QNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNP------ 929
+WI +P+ ++E ++ + G+HAA HA+L ++P ++ +++ EC P
Sbjct: 871 GLWIDIPKRALELIESKHLNSAGGIHAAQHAILGLLPRFIVAGVDEISTECKAPEKEFAE 930
Query: 930 -HDSRYFPERILLYDRHPGGTG 950
SR P R++ YD G G
Sbjct: 931 RQTSRKRPARLVFYDSKGGKQG 952
>gi|429849260|gb|ELA24663.1| DEAD/DEAH box [Colletotrichum gloeosporioides Nara gc5]
Length = 1158
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 253/723 (34%), Positives = 396/723 (54%), Gaps = 76/723 (10%)
Query: 250 STGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPT 309
+ GI++ ++HQAE+I L G++VVVAT TSSGKSL Y LPV+ AL D + A+Y+FPT
Sbjct: 371 AKGITQFFAHQAEAINGLLEGQHVVVATSTSSGKSLIYQLPVIHALEKDYHTRAMYIFPT 430
Query: 310 KALAQDQLRALLAMTKAFDASIDIGV--YDGDTTQKDRMWLRDNARLLITNPDMLHMSIL 367
KALAQDQ R+L M D+ V +DGDT K+R +RD AR++ TNPDMLH++IL
Sbjct: 431 KALAQDQKRSLREMLSYMPGMEDVLVETFDGDTPMKERNAIRDEARIIFTNPDMLHITIL 490
Query: 368 PYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCR 427
P ++ L NL+ +VV+DE H Y G G H + I+RRL R
Sbjct: 491 PQEERWRTFLKNLK-------------------YVVVDELHYYNGQMGSHVSFIMRRLRR 531
Query: 428 LCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLR 487
+C+ V F+ +AT ANP++H + + + L+ DG +K F+ WN
Sbjct: 532 ICAAVGNRHVKFISCSATVANPKQHFKTIFGIENVRLVDFDG----RKEFLCWN------ 581
Query: 488 SVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTRE 547
T D + A+ + E + LF +++ G+R IAF R R+ CE +++ ++
Sbjct: 582 -------TPYRDPGDPASGRGDAMFECARLFCQLMLRGVRIIAFTRVREQCEKLVTAVQQ 634
Query: 548 ILEETA-PHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTL 606
LE P V+ + YR GY A+DRRRIE + F GKL G+ AT ALELGID+G +D L
Sbjct: 635 ELESIGRPECVNRVMGYRGGYTAQDRRRIESEMFEGKLLGIVATTALELGIDIGTLDCVL 694
Query: 607 HLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQ 666
GFP +IA+L QQ+GR+GRR + SL+V V P DQ++M+ P++LF P +D +
Sbjct: 695 TWGFPYTIANLRQQSGRAGRRNKDSLSVLVGDCFPTDQHYMQNPDELFTKPNCELQVDLE 754
Query: 667 NHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYI 726
N V E H+ CAA E P+ + D +YFG L + L A F Y
Sbjct: 755 NMLVREGHIQCAAYEMPVRPVEDAEYFGQDLPQ-----------ICEERLLRDAMGF-YH 802
Query: 727 GHEK---MPSHTISIRAIESERYEVIDMQ--SNEVLEEIEESKAFFQVYEGAVYMHQGHT 781
H++ +PS ++IR E + + +ID+ NEVLEE+E S+A F +Y+GA+++HQG
Sbjct: 803 CHDRFRPIPSRFVAIRDTEDDHFAIIDITHGKNEVLEELEASRATFTIYDGAIFLHQGSK 862
Query: 782 YLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALAC 841
YLV++ +A ++ +++ T RD+TDI + T+ + +++ + ++A
Sbjct: 863 YLVRDFQPEKMMARVERVKVEWTTTQRDFTDI------DPIETEAIR-RISGSLSKAFYG 915
Query: 842 TVTTTW--FGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVP-QSVKAVVEQNFSFRS 898
T+ +GF+++ + ++ D V + P + +W+ +P ++++ + ++ +
Sbjct: 916 TIKIQQNVYGFFKVDKKKRVL-DAVHVDNPPVIRYGKGMWLDIPKKALQILADRRLHIAA 974
Query: 899 GLHAASHALLHVVPIYVRCNFSDLAPEC-------PNPHDSRYFPERILLYDRHPG--GT 949
+HAA HA+L ++P +V D+ EC R P R+ YD G G+
Sbjct: 975 SIHAAEHAILSLMPNFVISLPGDVRTECKVALKEFAKKESQRKRPGRLTFYDAKGGASGS 1034
Query: 950 GVS 952
G+S
Sbjct: 1035 GIS 1037
>gi|310792050|gb|EFQ27577.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
Length = 1167
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 249/725 (34%), Positives = 398/725 (54%), Gaps = 72/725 (9%)
Query: 250 STGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPT 309
S GI++ ++HQ E+I L G++VVV+T TSSGKSL Y LPV+ AL D ++ A+Y+FPT
Sbjct: 377 SKGITQFFAHQTEAINGLLEGQHVVVSTSTSSGKSLIYQLPVIHALEKDRNTRAMYIFPT 436
Query: 310 KALAQDQLRALLAMTKAFDASIDIGV--YDGDTTQKDRMWLRDNARLLITNPDMLHMSIL 367
KALAQDQ R+L + ++ V +DGDT +R +R+ AR++ TNPDMLH++IL
Sbjct: 437 KALAQDQKRSLRELMSYMPGMEEVLVETFDGDTPMNERNMIREEARIIFTNPDMLHITIL 496
Query: 368 PYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCR 427
P ++ L NL+ +VV+DE H Y G G H A I+RRL R
Sbjct: 497 PQEERWRTFLKNLK-------------------YVVVDELHYYNGQMGSHMAFIMRRLRR 537
Query: 428 LCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLR 487
+C+ V F+ +AT ANP++H + + + L+ DGSP +K F+ WN
Sbjct: 538 ICAAVGNRHIKFISCSATVANPKQHFETIFGIENVRLVDFDGSPSGRKEFLCWN------ 591
Query: 488 SVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTRE 547
T D + A+ + E + LF +++ G+R IAF R R+ CE +++ ++
Sbjct: 592 -------TPYKDPGDPASGRGDAMFECARLFCQLMLRGVRIIAFTRVREQCEKLVTAVQQ 644
Query: 548 ILEETA-PHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTL 606
LE P V+ + YR GY A+DRRRIE + F GKL G+ AT ALELGID+G +D L
Sbjct: 645 ELESLGRPECVNRVMGYRGGYTAQDRRRIESEMFEGKLLGIVATTALELGIDIGTLDCVL 704
Query: 607 HLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQ 666
GFP +IA+L QQ+GR+GRR + SL++ V DQ++M+ P++LF P +D +
Sbjct: 705 TWGFPYTIANLRQQSGRAGRRNKDSLSILVGDCFATDQHYMQNPDELFSKPNCELQVDLE 764
Query: 667 NHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYI 726
N V E H+ CAA E P+ + D +YFG L + L A F Y
Sbjct: 765 NMLVREGHIQCAAFEMPVRPVEDAEYFGKDLPR-----------ICEERLLKDALGF-YH 812
Query: 727 GHEK---MPSHTISIRAIESERYEVIDMQ--SNEVLEEIEESKAFFQVYEGAVYMHQGHT 781
H++ +PS ++IR E + + +ID+ NEVLEE+E S+A F +Y+GA+++HQG+
Sbjct: 813 CHDRFRPIPSRFVAIRDTEDDYFAIIDITHGRNEVLEELEASRATFTIYDGAIFLHQGNK 872
Query: 782 YLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALAC 841
YLV++ +A ++ +++ T RD+TDI + T+ + +++ + ++A
Sbjct: 873 YLVRDFQPDKMMARVERVKVEWTTTQRDFTDI------DPIETEAIR-KISGSLSRAFYG 925
Query: 842 TVTTTW--FGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVP-QSVKAVVEQNFSFRS 898
T+ +GF+++ + ++ D V + P + +W+ +P ++++ + ++ +
Sbjct: 926 TIKIQQNVYGFFKVDKKKRVL-DAVHVDNPPVIRYGKGMWLDIPKKALQILADRRLHIAA 984
Query: 899 GLHAASHALLHVVPIYVRCNFSDLAPEC-------PNPHDSRYFPERILLYDRH--PGGT 949
+HAA HA+L ++P +V D+ EC R P R+ YD GG+
Sbjct: 985 SIHAAEHAILSLMPNFVISLPGDVRTECKVALKEFAKKESQRKRPGRLTFYDAKGGAGGS 1044
Query: 950 GVSKQ 954
G+S +
Sbjct: 1045 GISTK 1049
>gi|410079701|ref|XP_003957431.1| hypothetical protein KAFR_0E01420 [Kazachstania africana CBS 2517]
gi|372464017|emb|CCF58296.1| hypothetical protein KAFR_0E01420 [Kazachstania africana CBS 2517]
Length = 1062
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 249/721 (34%), Positives = 383/721 (53%), Gaps = 69/721 (9%)
Query: 255 KLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQ 314
+ Y+HQA++I A G+NV++ T TSSGKSL Y L ++ L D S+ +Y+FPTKALAQ
Sbjct: 292 RFYNHQADAINAIHNGENVIITTSTSSGKSLIYQLSAIDILLKDPESTFMYIFPTKALAQ 351
Query: 315 DQLRALLAMTKAFDASIDIGV--YDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQ 372
DQ RA A+ D+ V YDGDT R +R NAR++ TNPDM+H+SILP H
Sbjct: 352 DQKRAFEAIISKIPQLRDLRVDTYDGDTEPSQRQSIRKNARVIFTNPDMIHVSILPNHVN 411
Query: 373 FSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHV 432
++ L NL++ VV+DE H YKG FG + AL++RRL R+C
Sbjct: 412 WTHFLYNLKI-------------------VVVDELHIYKGLFGSNVALVMRRLLRVCKEY 452
Query: 433 YGSDP-SFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLN 491
Y ++ F+ +AT NP +H ++ ++ + LI DGSP K V+WNP + +
Sbjct: 453 YANNELRFISCSATLKNPVKHMKDIFGITDVRLISEDGSPRGDKNLVIWNPPPLSQHM-- 510
Query: 492 KSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEE 551
K + I E + + E++ +R IAFC R++CEL++ R IL+E
Sbjct: 511 -------------RKRENFIRESAKILVELILVNVRTIAFCYVRRVCELLMKEVRSILQE 557
Query: 552 -TAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGF 610
L+ + YR GY A DRR+IER+ F G L V +TNALELGID+G +D L GF
Sbjct: 558 MNRSDLLVDVMSYRGGYSASDRRKIEREMFHGNLKAVISTNALELGIDIGGLDTVLMCGF 617
Query: 611 PGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFK----SPIECCHIDAQ 666
P S+A+ QQ+GR+GRR S+ + VA + P+DQ+++ +PE L + +D
Sbjct: 618 PLSVANFHQQSGRAGRRNHDSMTLVVASDSPVDQHYVAHPEVLLNLDDPDTFQDLVLDFD 677
Query: 667 NHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYI 726
N +LE H+ CAA E P+ L D KYF I + R Y S D ++ K +
Sbjct: 678 NQLILEGHIQCAAFELPIRLDRDSKYFDEEHLKSIC--EQRLY-SDDQGFHTNNKFLPW- 733
Query: 727 GHEKMPSHTISIRAIESERYEVIDMQS--NEVLEEIEESKAFFQVYEGAVYMHQGHTYLV 784
P+ +S+R +E +++ VID+ + N V+EEIE S+ F +Y+GA+++HQG+ YLV
Sbjct: 734 -----PAKHVSLRGVEEDQFAVIDITNGRNLVIEEIETSRTSFTLYDGAIFIHQGYPYLV 788
Query: 785 KELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVT 844
KE N K A Q+ D+ + T RD+TD+ + + + + T
Sbjct: 789 KEFNPDEKYATVQRVDVDWVTSQRDFTDV-----DPELIEMVRPLKSSDVPVYFGRIKTT 843
Query: 845 TTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVE-QNFSFRSGLHAA 903
FG++++ + II D VE + + S+ +WI +P+ + E + + +HAA
Sbjct: 844 IIVFGYFKVDKFKRII-DAVETHNDPIKFTSKGLWIDIPKRALDICESKRLNIAGAIHAA 902
Query: 904 SHALLHVVPIYVRCNFSDLAPECPNP-------HDSRYFPERILLYDRHPG--GTGVSKQ 954
H ++ + ++ ++ EC P R P R++ YD G G+G+S +
Sbjct: 903 QHGIMGIFSRFIVAGTDEIHTECKAPEKEFAERQTKRLRPARLIFYDSKGGEYGSGLSTK 962
Query: 955 V 955
+
Sbjct: 963 I 963
>gi|213405281|ref|XP_002173412.1| Hrq1p [Schizosaccharomyces japonicus yFS275]
gi|212001459|gb|EEB07119.1| Hrq1p [Schizosaccharomyces japonicus yFS275]
Length = 1055
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 303/971 (31%), Positives = 483/971 (49%), Gaps = 107/971 (11%)
Query: 17 LKKIVEAFAFVSIFSAHLQLRREKVI-LSHVKGALNQLEKFGVRVGIEDIENLAVLCPKV 75
KKI + F F++ L R +I ++ A F + I D+ L ++CPK+
Sbjct: 48 FKKIYQLFQFINTTYTFLNARNCLIITFPMLESAYKS--AFQKDLTITDLVKLQLICPKL 105
Query: 76 VQFANDDMESKNHDDSIVIINVSTEERDKVEDNLGSGQKAISLSKIFNAMKKRER----- 130
V F + K+ + + IN +T+ ++ + D L GQ I + ++ K + R
Sbjct: 106 VNF-----QYKSVEGLALAINKNTQAKE-IFDGLIEGQTYILVFELSEGNKGKGRGGHNS 159
Query: 131 ---SFKTNLWE---AVNLLMCKLQKRVMSLSVEDLLTYVKERRTDVRGN---EVKRARRS 181
+ K+ + + +++ L ++KR +L E+ L +R + + E+ R
Sbjct: 160 KNPTMKSQIHKQLLSIDYLKKVIKKR--NLIFEECLNNYYDRLVCTKKDPDSELDREANL 217
Query: 182 QSSTSSSHSFQRRCSDKSQLLPL--------EMVEHLRKGIGSQGQMVHVEDISAR-KAV 232
S + F S KS+++PL E+++ LR + Q+V S KA
Sbjct: 218 HIPISPT-DFDDSVSVKSEIVPLQTKPETIDEILDLLRGIKDYENQIVDEGTYSTEAKAC 276
Query: 233 LV-----EIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCY 287
V ++ L+D SA GI ++Y HQA +I NV+V+T TSSGKSL Y
Sbjct: 277 KVGFLSKQLSQELIDALYSA---NGIKEIYEHQALAINWLWERHNVIVSTATSSGKSLVY 333
Query: 288 NLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDA--SIDIGVYDGDTTQKDR 345
LP+L L +D ++AL +FPTKALAQDQ R+L + + + + +DGDT + R
Sbjct: 334 QLPILHDLQNDPETTALIVFPTKALAQDQKRSLQEVLSYMPSLSFVQVETFDGDTPIERR 393
Query: 346 MWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVID 405
+ + ++ TNPDMLH +ILP H ++ R L NLR + ++D
Sbjct: 394 ENIIEKCNIIFTNPDMLHQTILPRHDKWYRFLKNLR-------------------YFILD 434
Query: 406 EAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELI 465
E H Y G FG H + ILRRL RLC ++ + FV +AT +P+ H + + ++
Sbjct: 435 EIHVYNGIFGVHVSFILRRLRRLCCYLGNDNCRFVSCSATINDPQRHMQTIIGTKDVSVV 494
Query: 466 QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHG 525
SPC +KL+V+WNP D + + S + E S LF +V+
Sbjct: 495 DFTASPCGEKLYVMWNPP-------------YTDPSDPSKGRKSALHEASKLFILLVERN 541
Query: 526 LRCIAFCRSRKLCE-LVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKL 584
+R I FCR RK CE L+ + E+ +E HL+ I YRAGY DRR IE+ F G+L
Sbjct: 542 VRTIVFCRVRKSCETLMQAVLTELKQEKKDHLIPKIQSYRAGYTLSDRRLIEKKMFDGEL 601
Query: 585 CGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQ 644
G+ ATNALELGID+G +D + LGFP SI++L QQ GR+GRR + SLAVYV P+DQ
Sbjct: 602 LGIIATNALELGIDIGSLDAVVTLGFPYSISNLKQQFGRAGRRNKLSLAVYVVETFPMDQ 661
Query: 645 YFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTL 704
Y++++PE L +D N +L HL CAA E P++ D K+FGS L+ +
Sbjct: 662 YYLQHPEDLRYGSKAELTVDLSNELLLSHHLQCAASEFPVNPETDSKFFGS-LTKKVARE 720
Query: 705 KNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEV--LEEIEE 762
K G D + + P+ + IR I + Y ++D+ + ++ LE++E
Sbjct: 721 KLLG--------DEQGLYHPHPSYLPYPATQVKIRNISEDMYTLVDVTNGQLKHLEDLEP 772
Query: 763 SKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAY 822
+ YEGAVY++QG T++++ L++ + Q+ D+ + T RDYTD+ +
Sbjct: 773 FRVALTAYEGAVYIYQGRTFIIRNLDIDRRRIEAQRVDVDWITAQRDYTDVDPT------ 826
Query: 823 ATKISKDQLTKTTAQALACTVTTTW--FGFYRLWRGSGIIFDTVELYLPKYSYESQAVWI 880
++ L +QA V FG++++ + II DTV++ +S+ WI
Sbjct: 827 -RTFARFPLFGGASQAYFGNVRAALHVFGYFKINKKREII-DTVDIVDKPVIIDSKGFWI 884
Query: 881 QVPQSVKAVVE-QNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPEC-------PNPHDS 932
VP + ++ + + + +HAA HALL ++P+Y+ +D+ EC
Sbjct: 885 DVPWHIIELLSWKKINGAASIHAAEHALLSLMPLYISNGGNDIRTECKAGEKEFKQSDSQ 944
Query: 933 RYFPERILLYD 943
R P R++ YD
Sbjct: 945 RRRPARLIYYD 955
>gi|389573155|ref|ZP_10163231.1| ATP-dependent helicase [Bacillus sp. M 2-6]
gi|388427312|gb|EIL85121.1| ATP-dependent helicase [Bacillus sp. M 2-6]
Length = 748
Score = 427 bits (1098), Expect = e-116, Method: Compositional matrix adjust.
Identities = 262/764 (34%), Positives = 414/764 (54%), Gaps = 84/764 (10%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E++E L+K + Q+ H +I A+ A+ IP+ + D K AL+ G+S+LY HQ E+
Sbjct: 8 ELIEDLKK----EEQVEHWHEIEAKPALTSPIPERINDRLKVALEKRGVSELYIHQKEAF 63
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
+ G+NVV T T+SGK+LCYNLPVL++++ D +S +LY+FPTKALAQDQ L +
Sbjct: 64 ERVMDGENVVTVTPTASGKTLCYNLPVLQSITEDQTSRSLYLFPTKALAQDQKSELNEII 123
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
D I YDGDT+ R +R ++ITNPDMLH +ILP+H ++ + NL
Sbjct: 124 HEMDVPIHSETYDGDTSPAIRQRVRQAGHIVITNPDMLHSAILPHHTKWVSLFENL---- 179
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
+++VIDE H Y+G FG H A ++RRL R+C+ YGSDP+F+ ++A
Sbjct: 180 ---------------KYIVIDELHTYRGVFGSHVANVIRRLKRICA-FYGSDPTFICTSA 223
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T ANP+E +L S + LI+ +G+P +K FV +NP V+NK
Sbjct: 224 TIANPKELAEQLTG-SKVHLIERNGAPSGKKNFVFYNP-----PVVNK----------PL 267
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREIL-EETAPHLVDSICVY 563
N S + V+ L ++ ++ I F RSR E++LS+ +E++ +E P SI Y
Sbjct: 268 NIRQSAATVVNQLAKTFLKEKIQTIVFARSRVRVEVILSHIQELVKKEIGP---KSIRGY 324
Query: 564 RAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGR 623
R GY+ ++RR IE+ G + GV +TNALELG+D+G + V + G+PGS+AS WQQAGR
Sbjct: 325 RGGYLPKERRMIEKGLREGDILGVVSTNALELGVDIGQLKVCIMTGYPGSVASTWQQAGR 384
Query: 624 SGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHP 683
+GRR +L + VA PLDQY +++PE F P E I+ +N +L HL CA+ E P
Sbjct: 385 AGRRHEEALIIMVASSSPLDQYIVRHPEYFFNRPPESARINPENLIILVDHLKCASYELP 444
Query: 684 LSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIES 743
+++ FG G+ + YL + L S + Y + P+H IS+R+
Sbjct: 445 FR---EDEQFG-----GMEVEEILQYLHEEGVLHFSGNRY-YWSDQSFPAHGISLRSASQ 495
Query: 744 ERYEVIDMQSN----EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKA 799
E ++D QS+ ++ E++ A +++ A+Y+H+G Y V++L+ A ++
Sbjct: 496 ENVVIVD-QSDVANVRIIGEMDRFSAMTLLHDEAIYLHEGVQYQVEKLDYEHLKAYVKQV 554
Query: 800 DLKYFTKTRDYTDIHVSGGNNAYATKISK-DQLTKTTAQA-----LACTVTTTWFGFYRL 853
D++Y+T N A K+ + DQ T+ A + + T F RL
Sbjct: 555 DVEYYTD-----------ANLAVQLKVLEIDQTTEKEAVSVHYGDVTVNAMPTIFKKIRL 603
Query: 854 WRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPI 913
G I + ++LP+ + A W ++ ++ + E+ + L ++ L H+VP
Sbjct: 604 STGENI--GSGPIHLPEEEIHTSAAWFELHEAERTFEEK--TLEQLLLGIANVLQHIVPA 659
Query: 914 YVRCNFSDL--APECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
+V C+ SD+ + H + + LYD +PGG G+SK+V
Sbjct: 660 FVMCDRSDIHVISQIKAAHTGK---PTVFLYDHYPGGIGLSKEV 700
>gi|315040021|ref|XP_003169388.1| Hrq1p [Arthroderma gypseum CBS 118893]
gi|311346078|gb|EFR05281.1| Hrq1p [Arthroderma gypseum CBS 118893]
Length = 1139
Score = 427 bits (1098), Expect = e-116, Method: Compositional matrix adjust.
Identities = 258/697 (37%), Positives = 383/697 (54%), Gaps = 59/697 (8%)
Query: 240 LLDNTKSALKST-GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHD 298
L N +AL +T GI++ YSHQA++I G NV+V+T TSSGKSL Y +P+L L +
Sbjct: 317 LSQNLVNALYNTRGITQFYSHQAKAINDLHDGHNVIVSTSTSSGKSLIYQVPMLHELEEN 376
Query: 299 LSSSALYMFPTKALAQDQLRALLAMTKAFDA--SIDIGVYDGDTTQKDRMWLRDNARLLI 356
S +Y+FPTKALAQDQ R++L M + + I + +DGDT R +R+ AR++
Sbjct: 377 PHSRGMYIFPTKALAQDQRRSMLDMLQYMEGMEHIMVETFDGDTPITSRNSIREEARIIF 436
Query: 357 TNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGC 416
TNPD+LHM+ILP+ + L NL+ +VV+DE H Y G FG
Sbjct: 437 TNPDILHMTILPHESLWRTFLKNLK-------------------YVVVDELHVYNGLFGT 477
Query: 417 HTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKL 476
H ALI+RRL R+C+ + SD F+ +AT ANP EH + + ++L DGSP +K
Sbjct: 478 HVALIMRRLRRICASIGNSDIKFISCSATVANPEEHMKAIFGVDEVKLTDIDGSPSGRKE 537
Query: 477 FVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRK 536
F+ W P D +A++ S I E + +F +++ G+R IAFCR RK
Sbjct: 538 FLCWQPP-------------YKDPNDASSGRGSSIDESAKIFCQLILRGVRVIAFCRIRK 584
Query: 537 LCELVLSYTREILEETAPHLVDSICV-YRAGYVAEDRRRIERDFFGGKLCGVAATNALEL 595
CE +L+ + V + YR GY +DRR+IER+ F GKL G+ ATNALEL
Sbjct: 585 QCEYLLNTVKNEFRTLDRADVSRFVMGYRGGYSPQDRRKIEREMFEGKLLGIVATNALEL 644
Query: 596 GIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFK 655
G+D+G +D + FP SI++ QQ+GR+GRR + SL++ VA DQ++M P+ LF
Sbjct: 645 GVDIGSLDAVITHEFPHSISNFRQQSGRAGRRNKDSLSILVAGRSAADQHYMNNPDDLFT 704
Query: 656 SPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPS 715
P +D +N VLE H+ CAA E P+ D YFGS L+ L + D
Sbjct: 705 KPNCGLLVDLENELVLEGHIQCAAFEMPIRPENDSAYFGSQLAH----LAATRLIKDDMG 760
Query: 716 LDSSAKIFEYIGHEKM---PSHTISIRAIESERYEVIDMQSNE--VLEEIEESKAFFQVY 770
Y HE+ PS +SIR+I+ Y +ID +N V+EEIE+++ FF VY
Sbjct: 761 F--------YHCHERFRPNPSKFVSIRSIDEGNYAIIDTTNNRNIVIEEIEDARVFFTVY 812
Query: 771 EGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQ 830
EGA+Y HQG+TYLVKELN + A + + + T+ RD+T+ V +IS+
Sbjct: 813 EGAIYFHQGNTYLVKELNTIKRFARVVRVHVDWITEQRDFTN--VDPIETEAIRRISR-- 868
Query: 831 LTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVV 890
L+ A + T +G+++ + G I D V L P S+ +W+ VP++ ++
Sbjct: 869 LSDYRAFFGKIAIHTLVYGYFKKDK-KGRILDAVALDNPPIDKLSKGLWLDVPKTALEIL 927
Query: 891 -EQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPEC 926
N + + +HAA HA++ ++P ++ + D+ EC
Sbjct: 928 SSHNLNAAAAIHAAEHAIMSLLPTFLISSPGDIRTEC 964
>gi|150401942|ref|YP_001329236.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
maripaludis C7]
gi|150032972|gb|ABR65085.1| DEAD/DEAH box helicase domain protein [Methanococcus maripaludis
C7]
Length = 762
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 255/752 (33%), Positives = 403/752 (53%), Gaps = 64/752 (8%)
Query: 204 LEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAES 263
LE++ +RK + HV +I + A E L ++ L I K Y+HQ E+
Sbjct: 5 LELLNKMRKNKSFNDYIEHVREIPEKDAEYSEEELNLPQCIQNYLNGKYI-KPYTHQYET 63
Query: 264 IMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAM 323
+ + GKNV++ T T+SGKSLC+NLPV E L++D S++ALY++PTKAL+ DQL L +M
Sbjct: 64 LNHARGGKNVLITTSTASGKSLCFNLPVFEKLANDSSATALYIYPTKALSNDQLTTLKSM 123
Query: 324 TKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLI 383
I YDGDT + + +R +RL++TNP MLH+ +LPYH ++R NL+
Sbjct: 124 DSEMSLKIYPDRYDGDTNRDLKSEIRATSRLVVTNPYMLHL-VLPYHKGWTRFFENLK-- 180
Query: 384 AFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFST 443
+V+IDEAH Y+G FG H + ++RRL R+C + YGS+P FV ST
Sbjct: 181 -----------------YVIIDEAHMYRGVFGSHVSFLIRRLRRICEN-YGSNPQFVMST 222
Query: 444 ATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNA 503
AT ANP E +L L E+++NDGS ++K FVL+N QT +D+ N
Sbjct: 223 ATLANPEEFSQKLTGLD-FEVVENDGSQKSKKYFVLYNTMK---------QTTSEDSWNK 272
Query: 504 ANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVY 563
A LF + L+ I F R+R++ EL+ + +E L+ P L + + Y
Sbjct: 273 A---------AVRLFKASMLSKLQTIGFTRTRRMTELLTVWVKEDLD---PTLQNKVSAY 320
Query: 564 RAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGR 623
R+GY ++R IE GKL G+ +TNALE+GID+G +D L G+PG++ SLWQQAGR
Sbjct: 321 RSGYSTKNRIEIENRLKQGKLWGIFSTNALEVGIDIGSLDSVLMYGYPGTLMSLWQQAGR 380
Query: 624 SGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHP 683
+GR S+ A LDQY +K+PE +F+ E +D N+ +LE+ L CAA E
Sbjct: 381 AGRSGSDSIVTLFANSDALDQYLVKHPEMIFEKTPENAVVDLNNYHILEKQLECAAYELE 440
Query: 684 LSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIES 743
L+ + F +G+ I ++ G L Y+ + P+ +++ + S
Sbjct: 441 LTPNGKDSDFCNGIEKRILRMEENGRLKKQNG--------GYVSTTENPALNVNMNVVSS 492
Query: 744 ERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKY 803
E ++VID ++ +EEI++ + + ++GA+ ++QG YL+K+++L +K + +K Y
Sbjct: 493 EIFKVID-ENGRKIEEIDKWHVYCEAHKGAILINQGEKYLIKDIDLENKKCIAKKVKYDY 551
Query: 804 FTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDT 863
T TDI + +++ + T V T +F F + G +
Sbjct: 552 HTDAYATTDIKIE-------KELNSRNYGEFTFHFGEVNVITNYFEFAE--KKYGTVLTR 602
Query: 864 VELYLPKYSYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDL 922
L LP ++++ A+WI P+ +K+V E + S GLH A HA++++ P++V C+ SD+
Sbjct: 603 KPLDLPPLTFKTTAMWITFPPRFMKSVTEGDKSDIGGLHGAEHAMINIFPLHVMCDRSDI 662
Query: 923 APECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
H P I +YD GG G+S++
Sbjct: 663 GGVSDLKHQDTKRP-TIFIYDGMEGGIGLSEK 693
>gi|52080730|ref|YP_079521.1| ATP dependent helicase [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|52003941|gb|AAU23883.1| putative ATP dependent helicase [Bacillus licheniformis DSM 13 =
ATCC 14580]
Length = 755
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 262/760 (34%), Positives = 399/760 (52%), Gaps = 71/760 (9%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
+M++ L++ Q+VH I ++A + P+ L AL+ GI KLYSHQA++
Sbjct: 9 DMIQLLKEDQAFSRQIVHWHTIEGKEADYRDFPEGLDKRIVHALQQRGIEKLYSHQADAF 68
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
+ S AGKNV + T T+SGK+LCYNLPV++ ++ D + +LY+FPTKAL+QDQ L +
Sbjct: 69 LHSAAGKNVTLVTPTASGKTLCYNLPVIQRITEDQDARSLYLFPTKALSQDQKSELNELI 128
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
ASI+ YDGDT+ R +R ++ITNPDMLH +ILP+H ++ + NL
Sbjct: 129 DEIGASINCYTYDGDTSPSIRQKVRKAGHIVITNPDMLHSAILPHHTKWVSLFENL---- 184
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
+++VIDE H Y+G FG H A ++RRL R+ + YGS P F+ ++A
Sbjct: 185 ---------------KYIVIDELHVYRGVFGSHVANVIRRLMRI-AEFYGSKPQFICTSA 228
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T ANP E L + LI N+G+P +K F+ +NP RS+
Sbjct: 229 TIANPLELAETLTG-QPMHLISNNGAPSGRKHFLFYNPPMVNRSL--------------- 272
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEE-TAPHLVDSICVY 563
N S EV L +E +++G++ I F RSR E++L+Y +E+++ PH SI Y
Sbjct: 273 NIRKSATLEVRKLASEFLKNGIQTIVFARSRVRVEIILTYLQEVMKPIVGPH---SIQGY 329
Query: 564 RAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGR 623
R GY+ +RR IE+ G + GV +TNALELG+D+G + + G+PG+I+S WQQAGR
Sbjct: 330 RGGYLPNERRVIEKGLRSGDIKGVVSTNALELGVDIGQLQTCIMTGYPGTISSAWQQAGR 389
Query: 624 SGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHP 683
+GRR +L V VA PLDQY ++ P+ FK E I+ N +L H+ CAA E P
Sbjct: 390 AGRRHNEALIVMVASSAPLDQYIVQNPDYFFKQNPETAVINPDNLVILVDHIKCAAFELP 449
Query: 684 LSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIES 743
FG GI YL+ + L + + ++ ++ P+H IS+R+
Sbjct: 450 FKRT---DTFG-----GIEIEDILDYLAEERVLHLTGNTYHWM-NDAFPAHGISLRSASQ 500
Query: 744 ERYEVIDMQSNE---VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKAD 800
E +ID E V+ E++ A +++ A+Y+HQG Y V++L+ K A ++
Sbjct: 501 ENVVIIDQSRREKAKVIGEMDRFSAMTLLHDEAIYLHQGIQYQVEKLDWEEKKAFVREVQ 560
Query: 801 LKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGII 860
+ Y+T + V + T+ + T QA A F + GSG I
Sbjct: 561 VDYYTDANLAVLLRVLEVDKEKKTETAAFGFGDVTVQAKATIFKKIKFETHENI-GSGPI 619
Query: 861 FDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFS---FRSGLHAASHALLHVVPIYVRC 917
+LP+ + A W+QV S + QN++ L ++ L HV + V C
Sbjct: 620 ------HLPEEELHTNAAWVQVNDSER----QNWNDIKLEEALLGTANVLGHVAALKVMC 669
Query: 918 NFSDLA--PECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
+ SDL P+ H+ + I LYDR+PGG G+S++V
Sbjct: 670 DPSDLHVFPQIKAVHNEK---PTIFLYDRYPGGVGLSQKV 706
>gi|404489613|ref|YP_006713719.1| ATP-dependent helicase YprA [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|52348604|gb|AAU41238.1| putative ATP-dependent helicase YprA [Bacillus licheniformis DSM 13
= ATCC 14580]
Length = 758
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 262/760 (34%), Positives = 399/760 (52%), Gaps = 71/760 (9%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
+M++ L++ Q+VH I ++A + P+ L AL+ GI KLYSHQA++
Sbjct: 12 DMIQLLKEDQAFSRQIVHWHTIEGKEADYRDFPEGLDKRIVHALQQRGIEKLYSHQADAF 71
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
+ S AGKNV + T T+SGK+LCYNLPV++ ++ D + +LY+FPTKAL+QDQ L +
Sbjct: 72 LHSAAGKNVTLVTPTASGKTLCYNLPVIQRITEDQDARSLYLFPTKALSQDQKSELNELI 131
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
ASI+ YDGDT+ R +R ++ITNPDMLH +ILP+H ++ + NL
Sbjct: 132 DEIGASINCYTYDGDTSPSIRQKVRKAGHIVITNPDMLHSAILPHHTKWVSLFENL---- 187
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
+++VIDE H Y+G FG H A ++RRL R+ + YGS P F+ ++A
Sbjct: 188 ---------------KYIVIDELHVYRGVFGSHVANVIRRLMRI-AEFYGSKPQFICTSA 231
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T ANP E L + LI N+G+P +K F+ +NP RS+
Sbjct: 232 TIANPLELAETLTG-QPMHLISNNGAPSGRKHFLFYNPPMVNRSL--------------- 275
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEE-TAPHLVDSICVY 563
N S EV L +E +++G++ I F RSR E++L+Y +E+++ PH SI Y
Sbjct: 276 NIRKSATLEVRKLASEFLKNGIQTIVFARSRVRVEIILTYLQEVMKPIVGPH---SIQGY 332
Query: 564 RAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGR 623
R GY+ +RR IE+ G + GV +TNALELG+D+G + + G+PG+I+S WQQAGR
Sbjct: 333 RGGYLPNERRVIEKGLRSGDIKGVVSTNALELGVDIGQLQTCIMTGYPGTISSAWQQAGR 392
Query: 624 SGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHP 683
+GRR +L V VA PLDQY ++ P+ FK E I+ N +L H+ CAA E P
Sbjct: 393 AGRRHNEALIVMVASSAPLDQYIVQNPDYFFKQNPETAVINPDNLVILVDHIKCAAFELP 452
Query: 684 LSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIES 743
FG GI YL+ + L + + ++ ++ P+H IS+R+
Sbjct: 453 FK---RTDTFG-----GIEIEDILDYLAEERVLHLTGNTYHWM-NDAFPAHGISLRSASQ 503
Query: 744 ERYEVIDMQSNE---VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKAD 800
E +ID E V+ E++ A +++ A+Y+HQG Y V++L+ K A ++
Sbjct: 504 ENVVIIDQSRREKAKVIGEMDRFSAMTLLHDEAIYLHQGIQYQVEKLDWEEKKAFVREVQ 563
Query: 801 LKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGII 860
+ Y+T + V + T+ + T QA A F + GSG I
Sbjct: 564 VDYYTDANLAVLLRVLEVDKEKKTETAAFGFGDVTVQAKATIFKKIKFETHENI-GSGPI 622
Query: 861 FDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFS---FRSGLHAASHALLHVVPIYVRC 917
+LP+ + A W+QV S + QN++ L ++ L HV + V C
Sbjct: 623 ------HLPEEELHTNAAWVQVNDSER----QNWNDIKLEEALLGTANVLGHVAALKVMC 672
Query: 918 NFSDLA--PECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
+ SDL P+ H+ + I LYDR+PGG G+S++V
Sbjct: 673 DPSDLHVFPQIKAVHNEK---PTIFLYDRYPGGVGLSQKV 709
>gi|403218512|emb|CCK73002.1| hypothetical protein KNAG_0M01490 [Kazachstania naganishii CBS
8797]
Length = 1070
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 260/772 (33%), Positives = 404/772 (52%), Gaps = 76/772 (9%)
Query: 206 MVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIM 265
M+E +K Q+ I AR A E+ D + + + + Y+HQA+++
Sbjct: 253 MIEKFKKLDSYYDQIKDHFIIPARSAKYGELD---FDLSPTIFNAIEHQQFYTHQADALN 309
Query: 266 ASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTK 325
A G+NV++ T TSSGKSL Y + ++ L D ++ +Y+FPTKALAQDQ R+ A+
Sbjct: 310 AVHKGENVIITTSTSSGKSLIYQVSAIDILLQDPEATFMYIFPTKALAQDQKRSFEAIIS 369
Query: 326 AFD--ASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLI 383
I + YDGDT Q DR +R NAR++ TNPDM+H SILP H + L NL++
Sbjct: 370 KIPQLKGISVNTYDGDTEQADRREIRRNARVIFTNPDMIHASILPNHTNWKHFLYNLKI- 428
Query: 384 AFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCS-HVYGSDPSFVFS 442
VV+DE H Y+G FG + AL++RRL R+C H + F+
Sbjct: 429 ------------------VVVDELHIYRGLFGSNVALVMRRLLRICQVHYQNHELHFISC 470
Query: 443 TATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRN 502
+AT +P EH ++ + ++LIQ DGSP K V+WNP +L +
Sbjct: 471 SATLRHPVEHMKDIFGVEQVKLIQQDGSPNGPKNLVIWNP-----PILGQHM-------- 517
Query: 503 AANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREI-LEETAPHLVDSIC 561
K + I E + + E++ +R IAFC R++CEL++ R I +E L+ +
Sbjct: 518 --RKRENFIGESAKILVELILQNVRTIAFCFVRRVCELLMKEVRSIFVEMNRTDLLTDVM 575
Query: 562 VYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQA 621
YR GY DRR+IER+ F G L V +TNALELGID+G +D L GFP S+A+ QQ+
Sbjct: 576 SYRGGYSPADRRKIEREMFHGNLKAVISTNALELGIDIGGLDAVLMCGFPLSLANFHQQS 635
Query: 622 GRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCH----IDAQNHKVLEQHLVC 677
GR+GRR SL + VA + P+DQ+++ +PE L + + +D N VLE H+ C
Sbjct: 636 GRAGRRNNDSLTLVVATDSPVDQHYVAHPEALLDADNTDSYQELILDFTNPLVLEGHIQC 695
Query: 678 AALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTIS 737
AA E P+ + D++YF + I K L +D +S K + PS IS
Sbjct: 696 AAFELPIVIERDKQYFEEESLAKICETK---LLHNDEGYHASNKFLPW------PSKLIS 746
Query: 738 IRAIESERYEVIDMQSNE--VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIAL 795
+R + + + V+D+ +N V+E++E + F +Y+G +++HQG+ YLVKE+N K A
Sbjct: 747 LRGGDEDMFAVVDITNNRNIVIEQVETKRTSFTLYDGGIFIHQGYPYLVKEVNPDDKYAT 806
Query: 796 CQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTW--FGFYRL 853
Q+ D+ + T+ RDYTD+ + +I + L + + TT FGF+++
Sbjct: 807 VQRVDVDWVTQQRDYTDV------DPQLIEIVR-SLPDSDVPVYFGKMRTTIVVFGFFKM 859
Query: 854 WRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQ-NFSFRSGLHAASHALLHVVP 912
+ II D VE + + S+ +WI +P + EQ S +HA+ HA++ ++P
Sbjct: 860 DKYKRII-DAVETHNDPIVFYSKGLWIDIPPRALELCEQKQLSIAGAIHASQHAIMGILP 918
Query: 913 IYVRCNFSDLAPECPNP-------HDSRYFPERILLYDRHPG--GTGVSKQV 955
++ ++ EC P R P R++ YD G G+G+S +V
Sbjct: 919 RFIVAGVDEIVTECKAPEKEFAERQTKRKRPGRLVFYDSKGGEHGSGLSIKV 970
>gi|389628538|ref|XP_003711922.1| hypothetical protein MGG_13223 [Magnaporthe oryzae 70-15]
gi|351644254|gb|EHA52115.1| hypothetical protein MGG_13223 [Magnaporthe oryzae 70-15]
Length = 1165
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 283/858 (32%), Positives = 440/858 (51%), Gaps = 85/858 (9%)
Query: 117 SLSKIFNAMKKRERSFKTNLWEAVNLLMCKLQKRVMSLSVEDLLTYVKERRTDVRGNEVK 176
S ++ N ++KR + F + + +N + + VM+L E R V
Sbjct: 246 SQKQMANLIEKRNQRFTSAVNSFINRCVTESTDPVMALKSES-----------ERFIPVP 294
Query: 177 RARRSQSSTSSSHSFQRRCSDKSQLLPLEMVEHLRKGIGSQGQMVHVED--ISARKAVLV 234
A S + + ++ + +P E+V+ L++ GQ+V ++ V
Sbjct: 295 TAATQPSPPPETSTIPESIPNERKSIP-EIVQELKESPFYTGQIVPDGHRVFEPQEPVFG 353
Query: 235 EIPDALLDNTKSAL-KSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLE 293
++ L + +AL + GI++ Y+HQ E+I + G +VVVAT TSSGKSL Y LPVL
Sbjct: 354 DLNFLLSQDLVNALYNAKGITQFYAHQTEAINGLIDGHHVVVATSTSSGKSLIYQLPVLH 413
Query: 294 ALSHDLSSSALYMFPTKALAQDQLRAL---LAMTKAFDASIDIGVYDGDTTQKDRMWLRD 350
AL D + A+Y+FPTKALAQDQ R+L LA + I + +DGDT R +RD
Sbjct: 414 ALEKDHETRAMYIFPTKALAQDQKRSLKEMLAYMPGLEHLI-VDTFDGDTPMTARNLIRD 472
Query: 351 NARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAY 410
AR++ TNPDMLH++ILP ++ L NLR +VV+DE H Y
Sbjct: 473 EARIIFTNPDMLHITILPQEERWRTFLKNLR-------------------YVVVDELHYY 513
Query: 411 KGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGS 470
G G H ALI+RRL R+C+ V FV +AT ANPREH + +S + L+ DGS
Sbjct: 514 NGLMGSHVALIMRRLRRICAAVGNRHVKFVSCSATVANPREHFKTIFGISDVRLVDFDGS 573
Query: 471 PCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIA 530
P +K F+ WN + D R A E + LF ++V G+R IA
Sbjct: 574 PSGRKEFLCWN-------TPYRVPGDPSSGRGDAK------YECARLFCQLVLRGVRVIA 620
Query: 531 FCRSRKLCELVLSYTREILEETA-PHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAA 589
FCR R+ CE ++ + LE P + + YR GY +DRR+IE + F GKL G+ A
Sbjct: 621 FCRVREQCEKLVGAVKAELERLGRPECIARVMGYRGGYTPQDRRKIEAEMFEGKLVGIVA 680
Query: 590 TNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKY 649
T ALELG+D+G +D L GFP +IA+L QQ+GR+GRR SL++ V P DQ++M+
Sbjct: 681 TTALELGVDIGSLDCVLTWGFPYTIANLRQQSGRAGRRNLDSLSILVGDSFPTDQHYMQN 740
Query: 650 PEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGY 709
P+++F P +D +N V E H+ CAA E P+ D +YFG+ +
Sbjct: 741 PDEIFTQPNCALQVDLENMLVREGHIQCAAYEMPIRPDEDAQYFGADIHKICIE-----R 795
Query: 710 LSSDPSLDSSAKIFEYIGHEK---MPSHTISIRAIESERYEVIDMQ--SNEVLEEIEESK 764
L D ++ Y H++ MPS ++IR E E + +ID+ N VLEE+E S+
Sbjct: 796 LVPD-------ELGYYHCHDRFRPMPSKFVTIRDTEDEHFAIIDISYGRNVVLEELEASR 848
Query: 765 AFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYAT 824
A F +Y+GA+++HQG TYLV++ + +A +K + + T+ RD+TDI +
Sbjct: 849 ATFTLYDGAIFLHQGTTYLVRDFDPEKHMARVEKVKVDWTTEQRDFTDI-----DPIETE 903
Query: 825 KISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQ 884
I + + + A + FG++++ + + ++ D V + P S+ W+ +P+
Sbjct: 904 AIKRIEGSPCRAYHGTIRIKQVVFGYFKVDKRNRVL-DAVHVDNPPVVRFSKGTWLDIPR 962
Query: 885 SVKAVVE-QNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPN-------PHDSRYFP 936
+++ + + + +HAA H ++ +VP +V D+ EC N SR P
Sbjct: 963 RALEILDSRRLNAAAAIHAAEHCVMSLVPNFVISMPGDVRTECKNSLKEFARKETSRKRP 1022
Query: 937 ERILLYDRH--PGGTGVS 952
R+ YD GG+G++
Sbjct: 1023 ARLTFYDAKGGAGGSGIN 1040
>gi|423682696|ref|ZP_17657535.1| ATP dependent helicase [Bacillus licheniformis WX-02]
gi|383439470|gb|EID47245.1| ATP dependent helicase [Bacillus licheniformis WX-02]
Length = 755
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 261/760 (34%), Positives = 399/760 (52%), Gaps = 71/760 (9%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
+M++ L++ Q+VH I ++A + P+ L AL+ G+ KLYSHQA++
Sbjct: 9 DMIQLLKEDQAFSRQIVHWHTIEGKEADYRDFPEGLDKRIVHALQQRGVEKLYSHQADAF 68
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
+ S AGKNV + T T+SGK+LCYNLPV++ ++ D + +LY+FPTKAL+QDQ L +
Sbjct: 69 LHSAAGKNVTLVTPTASGKTLCYNLPVIQRITEDQDARSLYLFPTKALSQDQKSELNELI 128
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
ASI+ YDGDT+ R +R ++ITNPDMLH +ILP+H ++ + NL
Sbjct: 129 DEIGASINCYTYDGDTSPSIRQKVRKAGHIVITNPDMLHSAILPHHTKWVSLFENL---- 184
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
+++VIDE H Y+G FG H A ++RRL R+ + YGS P F+ ++A
Sbjct: 185 ---------------KYIVIDELHVYRGVFGSHVANVIRRLMRI-AEFYGSKPQFICTSA 228
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T ANP E L + LI N+G+P +K F+ +NP RS+
Sbjct: 229 TIANPLELAETLTG-QPMHLISNNGAPSGRKHFLFYNPPMVNRSL--------------- 272
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEE-TAPHLVDSICVY 563
N S EV L +E +++G++ I F RSR E++L+Y +E+++ PH SI Y
Sbjct: 273 NIRKSATLEVRKLASEFLKNGIQTIVFARSRVRVEIILTYLQEVMKPIVGPH---SIQGY 329
Query: 564 RAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGR 623
R GY+ +RR IE+ G + GV +TNALELG+D+G + + G+PG+I+S WQQAGR
Sbjct: 330 RGGYLPNERRVIEKGLRSGDIKGVVSTNALELGVDIGQLQTCIMTGYPGTISSAWQQAGR 389
Query: 624 SGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHP 683
+GRR +L V VA PLDQY ++ P+ FK E I+ N +L H+ CAA E P
Sbjct: 390 AGRRHNEALIVMVASSAPLDQYIVQNPDYFFKQNPETAVINPDNLVILVDHIKCAAFELP 449
Query: 684 LSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIES 743
FG GI YL+ + L + + ++ ++ P+H IS+R+
Sbjct: 450 FKRT---DTFG-----GIEIEDILDYLAEERVLHLTGNTYHWM-NDAFPAHGISLRSASQ 500
Query: 744 ERYEVIDMQSNE---VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKAD 800
E +ID E V+ E++ A +++ A+Y+HQG Y V++L+ K A ++
Sbjct: 501 ENVVIIDQSRREKAKVIGEMDRFSAMTLLHDEAIYLHQGIQYQVEKLDWEEKKAFVREVQ 560
Query: 801 LKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGII 860
+ Y+T + V + T+ + T QA A F + GSG I
Sbjct: 561 VDYYTDANLAVLLRVLEVDKEKKTETAAFGFGDVTVQAKATIFKKIKFETHENI-GSGPI 619
Query: 861 FDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFS---FRSGLHAASHALLHVVPIYVRC 917
+LP+ + A W+QV S + QN++ L ++ L HV + V C
Sbjct: 620 ------HLPEEELHTNAAWVQVNDSER----QNWNDIKLEEALLGTANVLGHVAALKVMC 669
Query: 918 NFSDLA--PECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
+ SDL P+ H+ + I LYDR+PGG G+S++V
Sbjct: 670 DPSDLHVFPQIKAVHNEK---PTIFLYDRYPGGVGLSQKV 706
>gi|333370509|ref|ZP_08462508.1| DEAD/DEAH box family ATP-dependent helicase [Desmospora sp. 8437]
gi|332977737|gb|EGK14500.1| DEAD/DEAH box family ATP-dependent helicase [Desmospora sp. 8437]
Length = 803
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 265/780 (33%), Positives = 413/780 (52%), Gaps = 78/780 (10%)
Query: 193 RRC----SDKSQLLPLE---MVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTK 245
RRC D+ + P+ ++E L+ + + ++ E I A+ A + P+ L + +
Sbjct: 36 RRCLRYPPDREERRPMNAKMLIEQLKNRVDIRDKVTRWETIPAQPAQYADFPEGLHPDLQ 95
Query: 246 SALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALY 305
L+ G+ +LY+HQA ++ A L GK+VV T T+SGK+LCYNLPVL + + + ALY
Sbjct: 96 KVLRQRGLERLYTHQAAAVKACLEGKHVVTVTPTASGKTLCYNLPVLHRILEEPEARALY 155
Query: 306 MFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMS 365
+FPTKALA DQ++ L M +A D I YDGDT R +R L++TNPDMLH +
Sbjct: 156 IFPTKALAHDQMKELNTMVEALDRGIKGYTYDGDTPPAARQMIRRAGHLVVTNPDMLHQA 215
Query: 366 ILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRL 425
+LP+H ++ ++ NL R++VIDE HAY+G FG H A +LRRL
Sbjct: 216 VLPHHTKWVKLFENL-------------------RYIVIDELHAYRGVFGSHFANVLRRL 256
Query: 426 CRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSC 485
R+C H YGSDP F+ S+AT ANP E +L + + L+ N+G+P +K FV +NP
Sbjct: 257 KRICRH-YGSDPQFILSSATIANPLEFAEKLVG-APVCLVDNNGAPSDEKHFVFFNP--- 311
Query: 486 LRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYT 545
V+N A S + E L E++++ ++ I F RSR E++L+Y
Sbjct: 312 --PVVNP----------ALGIRRSSVLEARTLAEELIRNDVQTIVFARSRVRVEVLLTY- 358
Query: 546 REILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVT 605
L++T P D + YR GY+ RR+IE G++ GV +TNALELGID+G ++
Sbjct: 359 ---LQKTLP---DQVRGYRGGYLPTQRRKIEEGLRKGQIRGVVSTNALELGIDIGELEAC 412
Query: 606 LHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDA 665
+ G+PG+IAS WQQAGR+GRR+ S+ VA PLDQY +++PE + E I
Sbjct: 413 VICGYPGTIASTWQQAGRAGRRQGASVTFLVASSNPLDQYVIEHPEYFLQRTPEHALIQP 472
Query: 666 QNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGI-TTLKNRGYLSSDPSLDSSAKIFE 724
N +L H+ CAA E P F +G G+ TT + +L + L S +
Sbjct: 473 DNLVILVNHIKCAAYELP---------FTAGEEFGVATTEEVLDFLVEERILHRSGGRW- 522
Query: 725 YIGHEKMPSHTISIRAIESERYEVIDMQS---NEVLEEIEESKAFFQVYEGAVYMHQGHT 781
Y + P+ IS+R+ E + +ID+ + VL E++ A ++E A+Y+H+G
Sbjct: 523 YWMDQSFPAKEISLRSAAQENFVIIDISETGHHRVLGEVDRFSAPTLIHEEAIYLHEGVQ 582
Query: 782 YLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQ-LTKTTAQALA 840
Y V++L+ K A +K D+ Y+T + V +++ + + T ALA
Sbjct: 583 YQVEKLDYEEKKAFVRKVDVDYYTDANLAVQLRVLEVERTEVDGPHREKVMGEVTVNALA 642
Query: 841 CTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGL 900
FG + GSG I +LP+ + A W+ + + + A + +SGL
Sbjct: 643 TLFKKIKFGTHENI-GSGPI------HLPEEEMHTTAYWLTIGEEIAARFGRE-DLQSGL 694
Query: 901 HAASHALLHVVPIYVRCNFSDLA--PECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDM 958
S+ L H+ P+Y+ C+ DL + H + I LYD++PGG G+S+++ ++
Sbjct: 695 VGLSNVLSHLAPLYLMCDPRDLGVVTQVKATHSGK---PTIFLYDKYPGGVGLSEKLFEL 751
>gi|319645312|ref|ZP_07999545.1| YprA protein [Bacillus sp. BT1B_CT2]
gi|317393121|gb|EFV73915.1| YprA protein [Bacillus sp. BT1B_CT2]
Length = 758
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 261/760 (34%), Positives = 399/760 (52%), Gaps = 71/760 (9%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
+M++ L++ Q+VH I ++A + P+ L AL+ G+ KLYSHQA++
Sbjct: 12 DMIQLLKEDQAFSRQIVHWHTIEGKEADYRDFPEGLDKRIVHALQQRGVEKLYSHQADAF 71
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
+ S AGKNV + T T+SGK+LCYNLPV++ ++ D + +LY+FPTKAL+QDQ L +
Sbjct: 72 LHSAAGKNVTLVTPTASGKTLCYNLPVIQRITEDQDARSLYLFPTKALSQDQKSELNELI 131
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
ASI+ YDGDT+ R +R ++ITNPDMLH +ILP+H ++ + NL
Sbjct: 132 DEIGASINCYTYDGDTSPSIRQKVRKAGHIVITNPDMLHSAILPHHTKWVSLFENL---- 187
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
+++VIDE H Y+G FG H A ++RRL R+ + YGS P F+ ++A
Sbjct: 188 ---------------KYIVIDELHVYRGVFGSHVANVIRRLMRI-AEFYGSKPQFICTSA 231
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T ANP E L + LI N+G+P +K F+ +NP RS+
Sbjct: 232 TIANPLELAETLTG-QPMHLISNNGAPSGRKHFLFYNPPMVNRSL--------------- 275
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEE-TAPHLVDSICVY 563
N S EV L +E +++G++ I F RSR E++L+Y +E+++ PH SI Y
Sbjct: 276 NIRKSATLEVRKLASEFLKNGIQTIVFARSRVRVEIILTYLQEVMKPIVGPH---SIQGY 332
Query: 564 RAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGR 623
R GY+ +RR IE+ G + GV +TNALELG+D+G + + G+PG+I+S WQQAGR
Sbjct: 333 RGGYLPNERRVIEKGLRSGDIKGVVSTNALELGVDIGQLQTCIMTGYPGTISSAWQQAGR 392
Query: 624 SGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHP 683
+GRR +L V VA PLDQY ++ P+ FK E I+ N +L H+ CAA E P
Sbjct: 393 AGRRHNEALIVMVASSAPLDQYIVQNPDYFFKQNPETAVINPDNLVILVDHIKCAAFELP 452
Query: 684 LSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIES 743
FG GI YL+ + L + + ++ ++ P+H IS+R+
Sbjct: 453 FK---RTDTFG-----GIEIEDILDYLAEERVLHLTGNTYHWM-NDAFPAHGISLRSASQ 503
Query: 744 ERYEVIDMQSNE---VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKAD 800
E +ID E V+ E++ A +++ A+Y+HQG Y V++L+ K A ++
Sbjct: 504 ENVVIIDQSRREKAKVIGEMDRFSAMTLLHDEAIYLHQGIQYQVEKLDWEEKKAFVREVQ 563
Query: 801 LKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGII 860
+ Y+T + V + T+ + T QA A F + GSG I
Sbjct: 564 VDYYTDANLAVLLRVLEVDKEKKTETAAFGFGDVTVQAKATIFKKIKFETHENI-GSGPI 622
Query: 861 FDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFS---FRSGLHAASHALLHVVPIYVRC 917
+LP+ + A W+QV S + QN++ L ++ L HV + V C
Sbjct: 623 ------HLPEEELHTNAAWVQVNDSER----QNWNDIKLEEALLGTANVLGHVAALKVMC 672
Query: 918 NFSDLA--PECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
+ SDL P+ H+ + I LYDR+PGG G+S++V
Sbjct: 673 DPSDLHVFPQIKAVHNEK---PTIFLYDRYPGGVGLSQKV 709
>gi|238493195|ref|XP_002377834.1| DEAD/DEAH box helicase, putative [Aspergillus flavus NRRL3357]
gi|220696328|gb|EED52670.1| DEAD/DEAH box helicase, putative [Aspergillus flavus NRRL3357]
Length = 1160
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 264/714 (36%), Positives = 387/714 (54%), Gaps = 68/714 (9%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKST-GISKLYSHQAESIMASLAGKNVVVATMTSSGKS 284
I A+ A+ E+ L N +AL +T GI++ YSHQAE+I G NV+V+T TSSGKS
Sbjct: 348 IDAQPAIHGELAFKLSQNLVNALYNTRGITQFYSHQAEAINHLYEGHNVIVSTSTSSGKS 407
Query: 285 LCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRA---LLAMTKAFDASIDIGVYDGDTT 341
L Y +P+L L +D S LY+FPTKALAQDQ R+ LL + ++ + +DGDT
Sbjct: 408 LIYQVPMLHELENDHDSRGLYIFPTKALAQDQRRSMKDLLQYMEGLQHTM-VETFDGDTP 466
Query: 342 QKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRF 401
++R +RD AR++ TNPDMLH+++LP + L NL+ F
Sbjct: 467 MENRNIIRDEARIIFTNPDMLHITVLPQESAWRTFLKNLK-------------------F 507
Query: 402 VVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLST 461
VV+DE H Y G FG H A ++RRL R+C+ V F+ +AT ANP +H + +
Sbjct: 508 VVVDELHVYNGLFGSHVAFVMRRLRRICAAVGNRHVRFISCSATVANPEDHMKAIFGVED 567
Query: 462 LELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEM 521
++LI DGSP +K F+ WN T D + + ++E + LF ++
Sbjct: 568 VKLIDFDGSPSGRKEFICWN-------------TPFKDPGDPTSGRGDSVAETARLFCQL 614
Query: 522 VQHGLRCIAFCRSRKLCELVLSYTR-EILEETAPHLVDSICVYRAGYVAEDRRRIERDFF 580
+ G R IAFCR RKLCE++L R E P + + + YR GY +DRR+IE++ F
Sbjct: 615 ILRGARVIAFCRIRKLCEVLLQAVRAEFQNLERPEIGNLVMGYRGGYSPQDRRKIEKEMF 674
Query: 581 GGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEG 640
GKL G+ ATNALELG+D+G +D + LGFP SI++L QQ+GR+GRR + SL+V V
Sbjct: 675 EGKLMGIVATNALELGVDIGSLDAVITLGFPYSISNLRQQSGRAGRRNKDSLSVLVGDRY 734
Query: 641 PLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSG 700
P DQY+MK PE+LF P C + N A P S S +
Sbjct: 735 PTDQYYMKNPEELFTKP--NCELQPTNSSSK------ATSNAPHSRC------PSAPTKT 780
Query: 701 ITTLKNRGYLSSDPSLDSSAKIFEYIGHEKM---PSHTISIRAIESERYEVIDMQS--NE 755
+T N + L A F Y HE+ PS +SIR E + + VID + N
Sbjct: 781 ASTSANNSPEFAATRLTKDALGF-YHCHERFRPQPSRCVSIRDTEDQHFAVIDTTNARNI 839
Query: 756 VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHV 815
VLEE+E S+AFF +YEG +++HQG TYLVKELN S+ A + + + T RDYTDI
Sbjct: 840 VLEEVEASRAFFTIYEGGIFLHQGQTYLVKELNPDSRFARVVRVHVDWNTMQRDYTDI-- 897
Query: 816 SGGNNAYATKISKDQLTKTTAQAL--ACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSY 873
+ T + TT++A A + +GF+++ + G + D V + P
Sbjct: 898 ----DPIETDTIRQISPTTTSRAFYGAVRIHAVVYGFFKIDK-RGRVLDAVAVDNPPIDI 952
Query: 874 ESQAVWIQVPQSVKAVVE-QNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPEC 926
++ +W+ VP+ ++E ++ + + +HAA HA+L ++P +V + D+ EC
Sbjct: 953 LTKGMWLDVPKRALEILESRHLNIAAAIHAAEHAVLSLLPTFVISSPGDVRTEC 1006
>gi|440470959|gb|ELQ39998.1| hypothetical protein OOU_Y34scaffold00464g80 [Magnaporthe oryzae Y34]
gi|440488272|gb|ELQ68003.1| hypothetical protein OOW_P131scaffold00270g8 [Magnaporthe oryzae
P131]
Length = 1693
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 284/861 (32%), Positives = 441/861 (51%), Gaps = 91/861 (10%)
Query: 117 SLSKIFNAMKKRERSFKTNLWEAVNLLMCKLQKRVMSLSVEDLLTYVKERRTDVRGNEVK 176
S ++ N ++KR + F + + +N + + VM+L E R V
Sbjct: 774 SQKQMANLIEKRNQRFTSAVNSFINRCVTESTDPVMALKSES-----------ERFIPVP 822
Query: 177 RARRSQSSTSSSHSFQRRCSDKSQLLPLEMVEHLRKGIGSQGQMVHVED--ISARKAVLV 234
A S + + ++ + +P E+V+ L++ GQ+V ++ V
Sbjct: 823 TAATQPSPPPETSTIPESIPNERKSIP-EIVQELKESPFYTGQIVPDGHRVFEPQEPVFG 881
Query: 235 EIPDALLDNTKSAL-KSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLE 293
++ L + +AL + GI++ Y+HQ E+I + G +VVVAT TSSGKSL Y LPVL
Sbjct: 882 DLNFLLSQDLVNALYNAKGITQFYAHQTEAINGLIDGHHVVVATSTSSGKSLIYQLPVLH 941
Query: 294 ALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASID---IGVYDGDTTQKDRMWLRD 350
AL D + A+Y+FPTKALAQDQ R+L M A+ ++ + +DGDT R +RD
Sbjct: 942 ALEKDHETRAMYIFPTKALAQDQKRSLKEML-AYMPGLEHLIVDTFDGDTPMTARNLIRD 1000
Query: 351 NARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAY 410
AR++ TNPDMLH++ILP ++ L NLR +VV+DE H Y
Sbjct: 1001 EARIIFTNPDMLHITILPQEERWRTFLKNLR-------------------YVVVDELHYY 1041
Query: 411 KGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGS 470
G G H ALI+RRL R+C+ V FV +AT ANPREH + +S + L+ DGS
Sbjct: 1042 NGLMGSHVALIMRRLRRICAAVGNRHVKFVSCSATVANPREHFKTIFGISDVRLVDFDGS 1101
Query: 471 PCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIA 530
P +K F+ WN + D R A E + LF ++V G+R IA
Sbjct: 1102 PSGRKEFLCWN-------TPYRVPGDPSSGRGDAK------YECARLFCQLVLRGVRVIA 1148
Query: 531 FCRSRKLCELVLSYTREILEETA-PHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAA 589
FCR R+ CE ++ + LE P + + YR GY +DRR+IE + F GKL G+ A
Sbjct: 1149 FCRVREQCEKLVGAVKAELERLGRPECIARVMGYRGGYTPQDRRKIEAEMFEGKLVGIVA 1208
Query: 590 TNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKY 649
T ALELG+D+G +D L GFP +IA+L QQ+GR+GRR SL++ V P DQ++M+
Sbjct: 1209 TTALELGVDIGSLDCVLTWGFPYTIANLRQQSGRAGRRNLDSLSILVGDSFPTDQHYMQN 1268
Query: 650 PEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSS-GITTL--KN 706
P+++F P +D +N V E H+ CAA E P+ D +YFG+ + I L
Sbjct: 1269 PDEIFTQPNCALQVDLENMLVREGHIQCAAYEMPIRPDEDAQYFGADIHKICIERLVPDE 1328
Query: 707 RGYLSSDPSLDSSAKIFEYIGHEK---MPSHTISIRAIESERYEVIDMQ--SNEVLEEIE 761
GY Y H++ MPS ++IR E E + +ID+ N VLEE+E
Sbjct: 1329 LGY---------------YHCHDRFRPMPSKFVTIRDTEDEHFAIIDISYGRNVVLEELE 1373
Query: 762 ESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNA 821
S+A F +Y+GA+++HQG TYLV++ + +A +K + + T+ RD+TDI +
Sbjct: 1374 ASRATFTLYDGAIFLHQGTTYLVRDFDPEKHMARVEKVKVDWTTEQRDFTDI-----DPI 1428
Query: 822 YATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQ 881
I + + + A + FG++++ + + ++ D V + P S+ W+
Sbjct: 1429 ETEAIKRIEGSPCRAYHGTIRIKQVVFGYFKVDKRNRVL-DAVHVDNPPVVRFSKGTWLD 1487
Query: 882 VPQSVKAVVE-QNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPN-------PHDSR 933
+P+ +++ + + + +HAA H ++ +VP +V D+ EC N SR
Sbjct: 1488 IPRRALEILDSRRLNAAAAIHAAEHCVMSLVPNFVISMPGDVRTECKNSLKEFARKETSR 1547
Query: 934 YFPERILLYDRH--PGGTGVS 952
P R+ YD GG+G++
Sbjct: 1548 KRPARLTFYDAKGGAGGSGIN 1568
>gi|328856257|gb|EGG05379.1| hypothetical protein MELLADRAFT_22633 [Melampsora larici-populina
98AG31]
Length = 916
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 254/701 (36%), Positives = 382/701 (54%), Gaps = 74/701 (10%)
Query: 228 ARKAVLVEIPDALLDNTKSALKSTG-ISKLYSHQAESIMASLAGKNVVVATMTSSGKSLC 286
+R A E+ L + AL +T I L+SHQAE+I AG++V+V+T TSSGKS+
Sbjct: 272 SRTAAFGELEQCLSPTLEQALFATKQIRSLFSHQAEAINHLSAGEHVIVSTSTSSGKSIV 331
Query: 287 YNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL--LAMTKAFD-ASIDIGVYDGDTTQK 343
Y +P+L+AL D SS LY+FPTKALAQDQ R L L D A + +DGDT ++
Sbjct: 332 YQIPMLQALEKDPSSCGLYIFPTKALAQDQKRTLSDLIFQCGEDFAKTKLATFDGDTPRE 391
Query: 344 DRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVV 403
DR+ +R+ A ++ TNPDMLH++ILP+ + R+ NL+L VV
Sbjct: 392 DRLGIRETANIIFTNPDMLHLTILPHEQLWRRLFQNLKL-------------------VV 432
Query: 404 IDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLE 463
+DE H Y G FG H + ++RRL R+C V FV +AT NP EH + +LS ++
Sbjct: 433 VDELHIYSGLFGVHMSFLMRRLRRICEAVGNPSVQFVSCSATIHNPVEHMKTVFSLSDVQ 492
Query: 464 LIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQ 523
L+ DGSP K V+WNP + D ++ + S ISE S +F ++
Sbjct: 493 LVSQDGSPSGSKHHVIWNPP-------------LLDEKDPSQGRISSISEASRIFRFLIG 539
Query: 524 HGLRCIAFCRSRKLCELVLSYTREILE-ETAPHLVDSICVYRAGYVAEDRRRIERDFFGG 582
+G+R I FC+ RK CEL++ RE L+ E L + YR+GY +++RR IE++ F G
Sbjct: 540 NGIRTIVFCKIRKSCELMIRQVREELQREGREDLSSRVKSYRSGYTSQERRVIEQEMFSG 599
Query: 583 KLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPL 642
+L G+ AT ALELGID+G +D L +GFP S++ QQAGR+GRR + SLA+ + GP
Sbjct: 600 ELLGIVATTALELGIDIGMLDAVLTVGFPHSLSGFRQQAGRAGRRNKESLAMLILDRGPS 659
Query: 643 DQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGL----S 698
+Q+F ++PE LF +P +D N ++ HL CAA E P+ DE YFG L
Sbjct: 660 NQHFAEHPEDLFDAPHSEIRLDLDNEVIVAGHLQCAAHEIPIHPKDDEVYFGPHLPTLCQ 719
Query: 699 SGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNE--- 755
S + K+ GY S P S P+ +SIR E Y ++D+ E
Sbjct: 720 SSLIEDKH-GYFHSHPRFQPS------------PAQHVSIRKNEEISYSIVDVSKAEEPK 766
Query: 756 VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHV 815
+LEEIE S+ ++ YEGA+++HQG T+ V +N + +I ++ D+ Y T+ R+ ++
Sbjct: 767 ILEEIESSRVMYECYEGAIFIHQGRTFQVISVNHAGEICKLREVDVDYMTRPRELNELDP 826
Query: 816 SGGNNAYATKISKDQLTKTTAQALAC----TVTTTWFGFYRLWRGSGIIFDTVELYLPKY 871
A + + AC +T+T +G+ +L R ++ D+ EL
Sbjct: 827 MRTMRIKAV---------SNYSSFACYGTIKLTSTIYGYLKLDRRQNVL-DSYELKTDPL 876
Query: 872 SYESQAVWIQVPQSVKAVVEQNFSFR--SGLHAASHALLHV 910
S+ +WI +P S+ + + +S + +HAA HALL++
Sbjct: 877 IQNSKGLWIDLP-SIAIITLRKYSIHLPTAIHAAEHALLNL 916
>gi|322712449|gb|EFZ04022.1| DEAD/DEAH box helicase, putative [Metarhizium anisopliae ARSEF 23]
Length = 1659
Score = 424 bits (1089), Expect = e-115, Method: Compositional matrix adjust.
Identities = 268/775 (34%), Positives = 419/775 (54%), Gaps = 73/775 (9%)
Query: 205 EMVEHLRKGIGSQGQMVHVED--ISARKAVLVEIPDALLDNTKSAL-KSTGISKLYSHQA 261
E+V+ L++ GQ+V ++A+ ++ L + +AL + GI++ Y+HQA
Sbjct: 835 EIVQELKESSWYTGQIVPDGHRVFEPQEAIYGDLGFLLTQDLVNALYNAKGITRFYAHQA 894
Query: 262 ESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALL 321
E++ GK+VVVAT TSSGKSL Y LPVL AL D +S A+Y+FPTKALAQDQ R+L
Sbjct: 895 EALNHLHEGKSVVVATSTSSGKSLIYQLPVLYALEKDYNSRAMYIFPTKALAQDQKRSLK 954
Query: 322 AMT---KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILS 378
M +A++ + +DGDT +R +R+ AR++ TNPDMLH++ILP ++ L
Sbjct: 955 EMMVYMPGLEATV-VETFDGDTPMSERTTIREEARVIFTNPDMLHVTILPQEERWRTFLK 1013
Query: 379 NLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPS 438
+L+ +VV+DE H Y G G H A I+RRL R+C+ V
Sbjct: 1014 HLK-------------------YVVVDELHYYNGQLGSHVAFIMRRLRRICAAVGNRRVR 1054
Query: 439 FVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMD 498
F+ +AT ANP+EH + + + LI DGSP +K F+ WN T
Sbjct: 1055 FISCSATVANPKEHFETIFGVKNVALIDYDGSPSGRKEFLCWN-------------TPYK 1101
Query: 499 DTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETA-PHLV 557
D + A+ + E + LF ++ G+R IAFCR R CE++++ ++ LE P +
Sbjct: 1102 DPGDPASGRGNAKLECARLFCALLLRGVRIIAFCRVRAQCEILVNAIKQELESLGRPECI 1161
Query: 558 DSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASL 617
+ + YR GY A DRRRIE + F GKL G+ +T ALELGID+G +D + GFP +IA+L
Sbjct: 1162 NLVMGYRGGYTAADRRRIESEMFEGKLLGIVSTTALELGIDIGTLDSVMSWGFPYTIANL 1221
Query: 618 WQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVC 677
QQ+GR+GRR + SL++ V DQ++M+ P++LF P +D N V E H+ C
Sbjct: 1222 RQQSGRAGRRNKDSLSILVGDGFATDQHYMQNPDELFTKPNCELQVDLSNMLVREGHIQC 1281
Query: 678 AALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKM---PSH 734
AA E P+ D +YFG+ +S R L D ++ Y H++ PS
Sbjct: 1282 AAYELPIRPEQDAQYFGADISDVC-----RTRLIQD-------EMGYYHCHDRFRPQPSR 1329
Query: 735 TISIRAIESERYEVIDMQS--NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSK 792
++IR E E + +ID+ + N VLEE+E S+A F +Y+GA+++HQG+TYLV++ +
Sbjct: 1330 YVAIRDTEDEHFAIIDITNGLNTVLEELEASRATFTIYDGAIFLHQGNTYLVRDFLPDRQ 1389
Query: 793 IALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYR 852
+A +K + + T RD+TDI + I K + + A + FG+++
Sbjct: 1390 MAKVEKVKVDWTTTQRDFTDI-----DPTETEAIRKIPCSLSQAYYGTIKIQQNVFGYFK 1444
Query: 853 LWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVE-QNFSFRSGLHAASHALLHVV 911
+ R G + D V++ P S+ +W+ VP++ +++ + + + +HAA HA++ ++
Sbjct: 1445 VDR-KGRVLDAVQVDNPPVIRYSKGMWLDVPRTALDILQDRRLNSAAAIHAAEHAVMSLL 1503
Query: 912 PIYVRCNFSDLAPECP-------NPHDSRYFPERILLYDRHPG--GTGVSKQVTD 957
P +V D+ EC R P R+ YD G G+G+S + D
Sbjct: 1504 PTFVISMPEDVRTECKVALKEFSKKESQRKRPARLTFYDAKGGASGSGISTKAFD 1558
>gi|288560367|ref|YP_003423853.1| DEAD/DEAH box helicase domain-containing protein
[Methanobrevibacter ruminantium M1]
gi|288543077|gb|ADC46961.1| DEAD/DEAH box helicase domain-containing protein
[Methanobrevibacter ruminantium M1]
Length = 918
Score = 423 bits (1088), Expect = e-115, Method: Compositional matrix adjust.
Identities = 258/757 (34%), Positives = 400/757 (52%), Gaps = 56/757 (7%)
Query: 207 VEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMA 266
++ + I + ++ +VE I + A ++ D L L+ I KLY HQA +I
Sbjct: 13 IDQFKNDIRFRRKIEYVETIPGKDASYKKV-DVLNKRILQYLEDKKI-KLYRHQALAIEK 70
Query: 267 SLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKA 326
+ KN+++ T T+SGK+L +NLPVLE L D + ALY++P KAL+ DQL+ L
Sbjct: 71 TREDKNIIITTPTASGKTLAFNLPVLEELISDNDACALYIYPAKALSYDQLKVLRNFEDE 130
Query: 327 FDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFS 386
++ YDGDT + R +R +R+++TNP +H IL +H Q+ R SNL+
Sbjct: 131 MGLDLNPNPYDGDTPKAKRYKIRQESRIILTNPYQIH-HILAWHHQWERFYSNLK----- 184
Query: 387 LVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATS 446
+++IDEAH YKG FG + A ++RRL R+ YGS+P F+ S+AT
Sbjct: 185 --------------YIIIDEAHYYKGIFGSNVAFLIRRLKRIAK-FYGSEPKFILSSATL 229
Query: 447 ANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANK 506
ANP E +L + ELI D SP +K FVL+NP ++ +K Q DMD+ + +
Sbjct: 230 ANPLELAEKLTG-ESFELIDEDSSPSGEKDFVLYNPYKSIKKD-SKDQFDMDEYSRSVH- 286
Query: 507 TSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAG 566
E +F ++ ++ + F SRK+ EL+ +T+ +E+ V+ I YRAG
Sbjct: 287 -----METERIFLYLILKDIQTLCFTSSRKIAELIALWTKRDMEKVKKRNVEKIAAYRAG 341
Query: 567 YVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGR 626
Y+AEDRR+IE GV +TNALELGI++G +D + GFPGS+ S WQQ GRSGR
Sbjct: 342 YLAEDRRQIEDGLKSRDYLGVTSTNALELGINIGSLDAVIISGFPGSMISTWQQGGRSGR 401
Query: 627 RERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSL 686
+ SL + VAFE LDQYFMK PE F P E ID N K+L+ H++CAA E PL+L
Sbjct: 402 TNQKSLVILVAFENQLDQYFMKNPEFFFDKPHENVVIDLNNEKLLKNHIICAANELPLTL 461
Query: 687 IYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERY 746
++ F ++NR S + F ++ PS S+ I +E +
Sbjct: 462 EEAKEEFNVTEDFLDNIVRNRDLRKS--------RGFYIYPYDDSPSFNFSLDQISNEIF 513
Query: 747 EVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTK 806
V M V+E +E+S + + +EGAV ++QG TY+V +++L S +K D++ T
Sbjct: 514 TV--MNGRTVIEHMEKSNMYREAHEGAVLINQGQTYIVNKVDLDSHFIFVKKKDVEAHT- 570
Query: 807 TRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVEL 866
I + N KI K ++ + T V +F Y+L + S +I + + +
Sbjct: 571 ------IALKRTNIKITKKIKKHRIGEFTVHFGELEVEEDYFK-YKLMQYSKVIGEYI-I 622
Query: 867 YLPKYSYESQAVWIQVPQSVKAVVEQNFS-----FRSGLHAASHALLHVVPIYVRCNFSD 921
LP + ++ +W +P SVK +E+ + F GLH HA++ + P++V C+ D
Sbjct: 623 DLPPLKFNTKGIWFTIPDSVKDKLEEIYKDETEVFAGGLHGTEHAMIGLFPLHVMCDRFD 682
Query: 922 LAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDM 958
+ N H+ I +YD + GG G+ ++ D+
Sbjct: 683 IGGLSTNYHEDTQ-EATIFIYDGYEGGIGICEKAIDL 718
>gi|282163485|ref|YP_003355870.1| putative ATP-dependent helicase [Methanocella paludicola SANAE]
gi|282155799|dbj|BAI60887.1| putative ATP-dependent helicase [Methanocella paludicola SANAE]
Length = 749
Score = 423 bits (1088), Expect = e-115, Method: Compositional matrix adjust.
Identities = 263/759 (34%), Positives = 405/759 (53%), Gaps = 74/759 (9%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E + L+ +GQ+ H+E++ R ++ L + L + I +LYSHQA +I
Sbjct: 6 EYIRDLKSSDNYEGQIAHIEELDERPPSFDDVNHILNLKLRGYLDAHRI-RLYSHQARAI 64
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
+L GKNV++ T T+SGKSL +N+PV EAL D ++ALY++P KAL+ DQL+ L AM
Sbjct: 65 DLALDGKNVIITTPTASGKSLAFNVPVFEALLEDKKATALYLYPMKALSNDQLKTLKAMD 124
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
+ YDGDT Q R+ +RD +RL+++NP +H L +H ++ R S LR
Sbjct: 125 EEMGTKASPAAYDGDTPQSARIGIRDTSRLIVSNPYAIH-RYLSWHDKWRRFFSGLR--- 180
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
++VIDEAH Y+G +G AL++RRL R+ YGSDP F+ S+A
Sbjct: 181 ----------------YIVIDEAHTYRGVYGSGVALLIRRLRRILKR-YGSDPRFILSSA 223
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T ANP E +L ++ DGS +K F+ WNP +S + Q
Sbjct: 224 TVANPEELSFKLTG-KEFSVVSRDGSGRGKKYFMFWNPPIEGQSRGSTHQ---------- 272
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYR 564
E L + + HGL+ + F +SR++ EL+ + RE I YR
Sbjct: 273 --------ETMRLMVDQLDHGLQTLCFAQSRRMAELIAKWAREYDNHK---FHGEIASYR 321
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
AGY+ EDRRRIE DF +L GV +TNALE+GID+G +D + G+PG+ S WQ+AGR+
Sbjct: 322 AGYLPEDRRRIENDFKSMRLKGVTSTNALEVGIDIGSLDSVIISGYPGTRISTWQEAGRA 381
Query: 625 GRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
GR SLA VAF+ PLDQ++MK+PE+ F S E +D +N +L HL+CA+ E PL
Sbjct: 382 GRGTSESLATLVAFDNPLDQFYMKHPERFFNSGNEEAIVDLRNPYILMGHLMCASAEMPL 441
Query: 685 SLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESE 744
+ D YFG +S + + + G + P ++ G K PS +S++ I S
Sbjct: 442 TAA-DSAYFGD-ISEAMEAMSSAGIIRRSP----RGMVY---GGTKSPSEIVSLKNISSH 492
Query: 745 RYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYF 804
V M +E+LE +E ++A + ++GAV +HQG TYL+++L+L IA K D+ Y+
Sbjct: 493 NVRV--MCGSELLETMETARACSEAHKGAVLLHQGETYLIEDLDLKLGIARAVKKDVDYY 550
Query: 805 TKTRDYTDIHVSGGNNAYATKISKDQLTKTT----AQALACTVTTTWFGFYRLWRGSGII 860
T+ +D+ I K++L KT TVT ++ Y + R ++
Sbjct: 551 TEALKLSDV-----------AIRKERLKKTVNGIDVHVGDVTVTEQYYE-YAMKRYEKLL 598
Query: 861 FDTVELYLPKYSYESQAVWIQVPQSV-KAVVEQNFSFRSGLHAASHALLHVVPIYVRCNF 919
L LP ++ES AVW +P+ + + ++ +N F G+HA HA++ + P++ C+
Sbjct: 599 -GYFPLDLPSQTFESVAVWFTLPEELHQKMLMENKDFNGGIHAVEHAMIAMAPLFALCDR 657
Query: 920 SDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDM 958
D+ H P I +YD + GG G++++ +M
Sbjct: 658 WDMGGLSTPDHPDTNLPT-IFVYDGYEGGIGIAEKCYEM 695
>gi|345016202|ref|YP_004818556.1| helicase/secretion neighborhood DEAH-box helicase [Streptomyces
violaceusniger Tu 4113]
gi|344042551|gb|AEM88276.1| helicase/secretion neighborhood putative DEAH-box helicase
[Streptomyces violaceusniger Tu 4113]
Length = 809
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 262/768 (34%), Positives = 389/768 (50%), Gaps = 73/768 (9%)
Query: 203 PLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAE 262
P ++ L G G ++ H E + R + P A+ +A+++ GI + ++HQA
Sbjct: 34 PRAVLGRLSTGAGRGARITHTEHLPPRPGTHADWPSAIRPEVINAIRAAGIERPWAHQAR 93
Query: 263 SIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL------SHDLSSSALYMFPTKALAQDQ 316
+ +L G +VVVAT T+SGKSL Y PVL L + ++ALY+ PTKALA DQ
Sbjct: 94 TAEHALRGDSVVVATGTASGKSLAYLAPVLSTLLDGSEEPNGRGTTALYLSPTKALAADQ 153
Query: 317 LRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRI 376
RA+ T I VYDGDT ++R W+R A ++TNPDMLH ILP H ++S
Sbjct: 154 RRAVAGFTAPLGTGIRAAVYDGDTPVEEREWVRQYANYVLTNPDMLHRGILPGHPRWSSF 213
Query: 377 LSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSD 436
L LR +VVIDE H Y+G FG H A +LRRL R+C+ YGS
Sbjct: 214 LRALR-------------------YVVIDECHTYRGVFGSHVAQVLRRLRRVCAR-YGSS 253
Query: 437 PSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTD 496
P F+ ++AT+++P L + +E I DGSP + +F LW P T+
Sbjct: 254 PVFLLASATASDPAVAASRLTGVPVVE-ITEDGSPRGEVVFALWEP----------PLTE 302
Query: 497 MDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHL 556
+ + A + ++ +E + L ++ G+R + F RSR+ EL+ +E L E L
Sbjct: 303 LHGEQGAPVRRTA-TAESADLLTDLAVQGVRTVTFVRSRRGAELIALIAQERLAEVDRSL 361
Query: 557 VDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIAS 616
D I YR GY+ E+RR +ER G+L G+AAT ALELG+D+ +D + G+PG+ AS
Sbjct: 362 PDRIAAYRGGYLPEERRALERALHSGELLGLAATTALELGMDIAGLDAVVVAGYPGTRAS 421
Query: 617 LWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLV 676
LWQQAGR+GR +LA+ VA + PLD Y + +P+ LF+ P+E +D N VL HL
Sbjct: 422 LWQQAGRAGRTGEGALAILVARDDPLDTYLVHHPDALFRQPVESTVLDPDNPYVLAPHLC 481
Query: 677 CAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTI 736
AA E PL+ D + FG + L+ R L A + + E+ T
Sbjct: 482 AAAAELPLTE-PDLELFGPATEELMPQLEQRKLLR------RRATAWHWTRRERAADLT- 533
Query: 737 SIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALC 796
IR +V++ + +L ++ + A V+EGAV++HQG +YLV++L+L +AL
Sbjct: 534 DIRGAGGSPVQVVEAATGRLLGTVDAAAAHTTVHEGAVHLHQGRSYLVRQLDLDDSVALV 593
Query: 797 QKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTT----AQALAC----TVTTTWF 848
++A Y T RD T I + L TT A C VT
Sbjct: 594 EEAAPPYSTTARDTTAISI---------------LETTTEIPWGDARLCFGSVEVTNQVV 638
Query: 849 GFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVP--QSVKAVVEQNFSFRSGLHAASHA 906
F R +G + +L LP + ++AVW V Q +A V + LHAA HA
Sbjct: 639 SFLRRKLITGEVLGESKLDLPPRTLRTRAVWWTVTDDQLEEARVHPQ-ALGGALHAAEHA 697
Query: 907 LLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
+ ++P++ C+ D+ H P + +YD HPGG G +++
Sbjct: 698 SIGILPLFATCDRWDIGGVSVPLHPDTLLPT-VFVYDGHPGGAGFAER 744
>gi|383319558|ref|YP_005380399.1| Distinct helicase family with a unique C-terminal domain including
a metal-binding cysteine cluster [Methanocella conradii
HZ254]
gi|379320928|gb|AFC99880.1| Distinct helicase family with a unique C-terminal domain including
a metal-binding cysteine cluster [Methanocella conradii
HZ254]
Length = 749
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 267/754 (35%), Positives = 403/754 (53%), Gaps = 76/754 (10%)
Query: 208 EHLR--KGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIM 265
E++R K GQ+ HVE+I R+ ++ AL + L S I +LYSHQA +I
Sbjct: 6 EYIRDLKASAPYGQIAHVEEIDEREPSFDDVSHALHPRLRGYLDSHKI-RLYSHQARAID 64
Query: 266 ASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTK 325
+L GKNV++ T T+SGK+L +N+PV EAL +D ++ALY++P KAL+ DQL+ L +M
Sbjct: 65 LALDGKNVIITTPTASGKTLAFNVPVFEALLNDKKATALYLYPMKALSNDQLKTLKSMDL 124
Query: 326 AFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAF 385
+YDGDT Q R +RD AR++++NP +H LP+H ++ R+ S LR
Sbjct: 125 ELGTKAMPSIYDGDTPQSARPGIRDTARIIVSNPYAIH-RYLPWHDRWRRLFSGLR---- 179
Query: 386 SLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTAT 445
FVVIDEAH Y+G +G A+++RRL R+ YGSDP F+ S+AT
Sbjct: 180 ---------------FVVIDEAHTYRGIYGSGVAMLIRRLRRILK-RYGSDPQFILSSAT 223
Query: 446 SANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAAN 505
ANP E +L E++ DGS +K F+ WNP ++R + +
Sbjct: 224 VANPEELSFKLTG-KQFEVVSKDGSGRGKKYFMFWNPPI------------EGESRGSTH 270
Query: 506 KTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRA 565
+ E L + HGL+ I F SR++ EL+ + RE D I YRA
Sbjct: 271 Q------ETMRLLVSQLDHGLQTICFTPSRRMAELIGKWAREY---DNGRFRDVIASYRA 321
Query: 566 GYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSG 625
GY+ EDRRRIE D +L GV +TNALE+GID+G +D + G+PG+ S WQQAGR+G
Sbjct: 322 GYLPEDRRRIEDDLKNRRLMGVTSTNALEVGIDIGSLDSVIISGYPGTRISTWQQAGRAG 381
Query: 626 RRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLS 685
R SL VAF+ PLDQY+MK+P++ F S E +D +N +L HL+CA+ E PL+
Sbjct: 382 RGMSESLVTLVAFDNPLDQYYMKHPDRFFHSKNEEAIVDLRNPYILMGHLMCASAELPLT 441
Query: 686 LIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESER 745
D YFG S + L + L P + F Y G K PS + ++ I S
Sbjct: 442 SD-DSAYFGD-FSEALEALSSASILRRTP------RGFVY-GGTKSPSEIVDLKNISSHT 492
Query: 746 YEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFT 805
V M +E+LE +E S+A + + GAV +HQG TYL+++L+L IA + D+ Y+T
Sbjct: 493 VRV--MCGSELLETMEASRACSEAHNGAVLLHQGETYLIEDLDLKLGIARAVQKDVDYYT 550
Query: 806 KTRDYTDIHVSGGNNAYATKISKDQLTKTT----AQALACTVTTTWFGFYRLWRGSGIIF 861
+ +D+ I ++++ KT TVT ++ Y + R ++
Sbjct: 551 EALKLSDV-----------AIRRERMRKTVNGIDVHVGDVTVTEQYYE-YAMKRYEKLL- 597
Query: 862 DTVELYLPKYSYESQAVWIQVPQSV-KAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFS 920
L LP ++ES A+W +P + + ++ +N F G+HA HA++ + P++ C+
Sbjct: 598 GYFPLDLPPQTFESVALWFTLPDDLHQGMLAENRDFNGGIHAVEHAMIAMAPLFALCDRW 657
Query: 921 DLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
D+ H P I +YD + GG G++++
Sbjct: 658 DMGGLSTPNHPDTNLPT-IFIYDAYEGGIGIAEK 690
>gi|358396847|gb|EHK46222.1| hypothetical protein TRIATDRAFT_140927 [Trichoderma atroviride IMI
206040]
Length = 1619
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 259/729 (35%), Positives = 391/729 (53%), Gaps = 80/729 (10%)
Query: 253 ISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKAL 312
I++ Y+HQAE++ + G+N+V++T TSSGKSL Y LPVL AL D SS A+Y+FPTKAL
Sbjct: 862 ITQFYTHQAEALNSLYEGQNIVISTSTSSGKSLVYQLPVLHALERDKSSRAMYIFPTKAL 921
Query: 313 AQDQLRAL---LA-MTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILP 368
AQDQ R+L LA M D +D +DGDT R +R+ A+++ TNPDMLH++ILP
Sbjct: 922 AQDQKRSLGDLLAFMPNLSDVLVD--TFDGDTPMSLREIIRNEAKIIFTNPDMLHLTILP 979
Query: 369 YHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRL 428
++ L +LR FVV+DE H Y G G H A I+RRL R+
Sbjct: 980 QEQRWRTFLKHLR-------------------FVVVDELHYYNGQLGSHVAFIMRRLRRI 1020
Query: 429 CSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRS 488
C V F+ +AT ANP EH + +S + LI DGSP +K F+ WN
Sbjct: 1021 CEAVGNRHVQFISCSATVANPEEHFKLIFGVSNVHLIDWDGSPSGRKEFLCWN------- 1073
Query: 489 VLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREI 548
T + + + + E + LF ++ G+R IAFCR R CE++ S ++
Sbjct: 1074 ------TPFREPGDPTSGRGNTKFECARLFCALLLRGVRIIAFCRVRAQCEVLTSAIKQE 1127
Query: 549 LEETA-PHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLH 607
L E P + + YR GY A DRR+IE + F GKL G+ AT ALELGID+G +D L
Sbjct: 1128 LRELGRPECTNLVMGYRGGYTARDRRKIEAEMFEGKLLGIVATTALELGIDIGTLDCVLT 1187
Query: 608 LGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQN 667
GFP +I +L QQ+GR+GRR + SL++ V P DQ++M P++LF P +D +N
Sbjct: 1188 WGFPYTITNLRQQSGRAGRRTKDSLSILVGDSFPTDQHYMNNPDELFSKPNCELRVDLEN 1247
Query: 668 HKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIG 727
+ E H+ CAA E P+ D +YFG+ L P + + + +G
Sbjct: 1248 ILLREGHIQCAAYEMPIRQNEDVQYFGNDL----------------PKICIERLVEDEVG 1291
Query: 728 ----HEKM---PSHTISIRAIESERYEVIDMQS--NEVLEEIEESKAFFQVYEGAVYMHQ 778
H++ P+ ++IR E E Y +ID+ + NEVLEE+E S+A F +Y+GA+++HQ
Sbjct: 1292 YFHCHDRFRPNPAQYVAIRDTEDEHYAIIDITNGKNEVLEELEASRATFTIYDGAIFLHQ 1351
Query: 779 GHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQA 838
G+T+L+++ K+A ++ ++++ T RDYTDI + I + A
Sbjct: 1352 GNTFLIRDFLPDQKMAKVERVNVEWTTMPRDYTDI-----DPIEIEAIRTISGSPCHAYY 1406
Query: 839 LACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQ-NFSFR 897
+ + T FGF+++ + G I D V++ P S+ +WI +P+ V +++ +
Sbjct: 1407 GSIKIQQTVFGFFKVDK-KGRIIDAVQVDNPPVIRYSKGMWIDIPRQVLGILQDLALNAA 1465
Query: 898 SGLHAASHALLHVVPIYVRCNFSDLAPEC-------PNPHDSRYFPERILLYDRHPG--G 948
+ +HAA H ++ ++P +V D+ EC R P R+ YD G G
Sbjct: 1466 AAIHAAEHVIMSLLPAFVISLPGDIRTECKVALKEFAKKETKRKRPARLTFYDAKGGING 1525
Query: 949 TGVSKQVTD 957
+GVS + D
Sbjct: 1526 SGVSTKAFD 1534
>gi|259506077|ref|ZP_05748979.1| DEAD/DEAH box family ATP-dependent RNA helicase [Corynebacterium
efficiens YS-314]
gi|259166365|gb|EEW50919.1| DEAD/DEAH box family ATP-dependent RNA helicase [Corynebacterium
efficiens YS-314]
Length = 866
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 250/757 (33%), Positives = 386/757 (50%), Gaps = 75/757 (9%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+ H+ + AR A P + + L G+ KLY+HQAE+ + AG +VVVAT T
Sbjct: 100 LTHMVTLPARSARFTPWPRWVPAGLREQLGHRGVDKLYAHQAETAELAWAGHHVVVATGT 159
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAF----DASIDIGV 335
SSGKSL Y LP+L L+ D ++ ALY+ PTKAL DQL A + +A A I
Sbjct: 160 SSGKSLGYQLPILATLATDPTACALYLTPTKALGSDQLNATTELIRATPELAGAGIHPAP 219
Query: 336 YDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLI 395
YDGDT + R +R+ +R + +NPDM+H S+L H +++R+L +LR
Sbjct: 220 YDGDTPTEARSGIRELSRFVFSNPDMVHASLLANHARWARVLRHLR-------------- 265
Query: 396 FLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCME 455
F+V+DE HAY+G FG +L+LRRL R+ +H YGS P+ + ++ATS +P H
Sbjct: 266 -----FIVVDECHAYRGVFGAGISLVLRRLLRIAAH-YGSHPTVILASATSTDPAIHASR 319
Query: 456 LANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVS 515
L + + + +DG+P ++ +LW P + ++ + N A + +E +
Sbjct: 320 LIG-APVRAVTDDGAPTGERTVMLWEP-----GFIEGAEGE-----NGAPVRRAASTEAA 368
Query: 516 YLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETA-PHLVDSICVYRAGYVAEDRRR 574
+L ++ G R + F RSR+ E+V T+E L P + YRAGY+AEDRRR
Sbjct: 369 HLMGTLIAEGARTLTFVRSRRQAEIVALRTQEELSLLGRPDFGARVAPYRAGYLAEDRRR 428
Query: 575 IERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAV 634
+ER G L GVA TNALELGIDVG +D + GFPG+IAS WQQAGR+GRR + SL +
Sbjct: 429 LERMLDDGTLLGVATTNALELGIDVGGLDAVVTAGFPGTIASFWQQAGRAGRRGQGSLVI 488
Query: 635 YVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFG 694
VA + P+D Y + +P+ L K P+E D N +L H+ CAA E PL+ E +
Sbjct: 489 LVARDEPMDTYLVHHPDALLKKPVEAAVFDPTNPHILRGHVYCAAAEQPLTEAEVEAF-- 546
Query: 695 SGLSSGITTLKNRGYLSSDP-----SLDSSAKIFEYIGHEKMPS---HTISIRAIESERY 746
G + L + G+L P + + + + G E P T+++R +
Sbjct: 547 -GAQDVVEQLTDEGFLRRRPRGWFAAHRPTGDLQD--GQELTPDTAHQTVNLRGGSGSEF 603
Query: 747 EVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTK 806
++D+ +L I+ ++A QV+ GAVY+HQG +++ EL++ ++AL + + +Y T
Sbjct: 604 MIVDISDGRLLGTIDAARAMSQVHPGAVYLHQGEHFVIDELDIEEQLALARPENPEYTTF 663
Query: 807 TRDYTDIHVSG----------GNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRG 856
R TDI ++G G + ++ + + T Y
Sbjct: 664 ARSDTDIRITGSPGEDEVFNPGGGLWVANVAVEVTDRVTG--------------YVTKLP 709
Query: 857 SGIIFDTVELYLPKYSYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYV 915
G D LYLP ++AV + P ++ A+ LHAA HA + ++P+
Sbjct: 710 DGTTLDATPLYLPPQQLNTRAVAYTIDPLALSAMGIAPADIPGALHAAEHAAIGMLPLLA 769
Query: 916 RCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVS 952
C+ D+ H +P + +YD GG G +
Sbjct: 770 TCDRWDIGGVSTALHPDTGYPT-VFVYDGMEGGAGFA 805
>gi|428165666|gb|EKX34656.1| hypothetical protein GUITHDRAFT_80398, partial [Guillardia theta
CCMP2712]
Length = 537
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 245/575 (42%), Positives = 343/575 (59%), Gaps = 67/575 (11%)
Query: 248 LKSTGISK--LYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLS----- 300
++S GIS LYSHQAE++ A+L G NV+V T T+SGKSLC+NLPVLE++ L
Sbjct: 2 IESVGISSSSLYSHQAEAVDAALDGMNVIVTTATASGKSLCFNLPVLESVLDPLGVGRDS 61
Query: 301 ---SSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLIT 357
+ AL+++PTKALAQDQLRAL +T + + I V DGDT KDR + A +++T
Sbjct: 62 VTPARALFLYPTKALAQDQLRALRKLTSLWLSPSKIAVLDGDTPMKDRASIVREASIVLT 121
Query: 358 NPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCH 417
NPDMLH++ILP H + +LS LR ++V+DEAH Y GAFG H
Sbjct: 122 NPDMLHVTILPGHKRHVPLLSCLR-------------------YIVLDEAHMYHGAFGMH 162
Query: 418 TALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLS--TLELIQNDGSPCAQK 475
A+++RRL R+CSH Y S P F+ +AT A+P +L L + ++ DGSPC K
Sbjct: 163 VAMVIRRLRRICSH-YRSSPQFLCCSATIASPASLLSQLTGLPADSFHVVSEDGSPCGPK 221
Query: 476 LFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSR 535
FVLWNP L + S I EV+ LFAE+V+HGLR IAFC +R
Sbjct: 222 RFVLWNPPDELEP-----------------RRVSSIGEVANLFAELVRHGLRTIAFCTTR 264
Query: 536 KLCELVLSYTREILEETAP-HLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALE 594
KL ELVL Y +E L+ HL +++ YR GY E RR IE+ F +L GVAATNALE
Sbjct: 265 KLSELVLQYAQEALQAAGQQHLCETVMSYRGGYTPEQRREIEQLLFSDRLRGVAATNALE 324
Query: 595 LGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLF 654
LG+DVG +D TLHLGF SIASLWQQAGR+GRR + SL++Y+A++ P+DQ+F+++P++LF
Sbjct: 325 LGVDVGSMDATLHLGFQRSIASLWQQAGRAGRRRKTSLSIYIAWDSPIDQFFLRHPQQLF 384
Query: 655 KSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFG---SGLSSGITTL---KNRG 708
P+E ++ N +L+ HL+CAA E PL DE F + + L NR
Sbjct: 385 SLPLEPALLNLANPDILQPHLLCAASELPLKREEDEALFAELPAVYRDNVLQLIEKGNRK 444
Query: 709 YLSSDPSL-------DSSAKIFE--YIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEE 759
P L + SA + E + G K PS +S+R I+ R++++ ++ EE
Sbjct: 445 IGCLQPVLGGGGGGGEESAMLEECNFCGAPK-PSKEVSLRCIDEHRWKIL-VRGGRREEE 502
Query: 760 IEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIA 794
E+ ++ +YEGA YM+ G T++++ L+ + A
Sbjct: 503 EEKDRSCRSIYEGATYMNNGKTFIIRVLDFEKREA 537
>gi|25026861|ref|NP_736915.1| hypothetical protein CE0305 [Corynebacterium efficiens YS-314]
gi|23492141|dbj|BAC17115.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
Length = 898
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 250/757 (33%), Positives = 386/757 (50%), Gaps = 75/757 (9%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+ H+ + AR A P + + L G+ KLY+HQAE+ + AG +VVVAT T
Sbjct: 132 LTHMVTLPARSARFTPWPRWVPAGLREQLGHRGVDKLYAHQAETAELAWAGHHVVVATGT 191
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAF----DASIDIGV 335
SSGKSL Y LP+L L+ D ++ ALY+ PTKAL DQL A + +A A I
Sbjct: 192 SSGKSLGYQLPILATLATDPTACALYLTPTKALGSDQLNATTELIRATPELAGAGIHPAP 251
Query: 336 YDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLI 395
YDGDT + R +R+ +R + +NPDM+H S+L H +++R+L +LR
Sbjct: 252 YDGDTPTEARSGIRELSRFVFSNPDMVHASLLANHARWARVLRHLR-------------- 297
Query: 396 FLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCME 455
F+V+DE HAY+G FG +L+LRRL R+ +H YGS P+ + ++ATS +P H
Sbjct: 298 -----FIVVDECHAYRGVFGAGISLVLRRLLRIAAH-YGSHPTVILASATSTDPAIHASR 351
Query: 456 LANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVS 515
L + + + +DG+P ++ +LW P + ++ + N A + +E +
Sbjct: 352 LIG-APVRAVTDDGAPTGERTVMLWEP-----GFIEGAEGE-----NGAPVRRAASTEAA 400
Query: 516 YLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETA-PHLVDSICVYRAGYVAEDRRR 574
+L ++ G R + F RSR+ E+V T+E L P + YRAGY+AEDRRR
Sbjct: 401 HLMGTLIAEGARTLTFVRSRRQAEIVALRTQEELSLLGRPDFGARVAPYRAGYLAEDRRR 460
Query: 575 IERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAV 634
+ER G L GVA TNALELGIDVG +D + GFPG+IAS WQQAGR+GRR + SL +
Sbjct: 461 LERMLDDGTLLGVATTNALELGIDVGGLDAVVTAGFPGTIASFWQQAGRAGRRGQGSLVI 520
Query: 635 YVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFG 694
VA + P+D Y + +P+ L K P+E D N +L H+ CAA E PL+ E +
Sbjct: 521 LVARDEPMDTYLVHHPDALLKKPVEAAVFDPTNPHILRGHVYCAAAEQPLTEAEVEAF-- 578
Query: 695 SGLSSGITTLKNRGYLSSDP-----SLDSSAKIFEYIGHEKMPS---HTISIRAIESERY 746
G + L + G+L P + + + + G E P T+++R +
Sbjct: 579 -GAQDVVEQLTDEGFLRRRPRGWFAAHRPTGDLQD--GQELTPDTAHQTVNLRGGSGSEF 635
Query: 747 EVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTK 806
++D+ +L I+ ++A QV+ GAVY+HQG +++ EL++ ++AL + + +Y T
Sbjct: 636 MIVDISDGRLLGTIDAARAMSQVHPGAVYLHQGEHFVIDELDIEEQLALARPENPEYTTF 695
Query: 807 TRDYTDIHVSG----------GNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRG 856
R TDI ++G G + ++ + + T Y
Sbjct: 696 ARSDTDIRITGSPGEDEVFNPGGGLWVANVAVEVTDRVTG--------------YVTKLP 741
Query: 857 SGIIFDTVELYLPKYSYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYV 915
G D LYLP ++AV + P ++ A+ LHAA HA + ++P+
Sbjct: 742 DGTTLDATPLYLPPQQLNTRAVAYTIDPLALSAMGIAPADIPGALHAAEHAAIGMLPLLA 801
Query: 916 RCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVS 952
C+ D+ H +P + +YD GG G +
Sbjct: 802 TCDRWDIGGVSTALHPDTGYPT-VFVYDGMEGGAGFA 837
>gi|56420072|ref|YP_147390.1| ATP-dependent RNA helicase [Geobacillus kaustophilus HTA426]
gi|56379914|dbj|BAD75822.1| ATP-dependent RNA helicase [Geobacillus kaustophilus HTA426]
Length = 758
Score = 420 bits (1080), Expect = e-114, Method: Compositional matrix adjust.
Identities = 262/759 (34%), Positives = 400/759 (52%), Gaps = 74/759 (9%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E +E LR+ +VH +I ++A V PD L +ALK+ GI+ LY+HQA +
Sbjct: 8 EWIEQLRQ----DPNVVHWHEIEPKEANFVPFPDELDPRLGAALKARGIASLYTHQAAAY 63
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
A +G+N+V T T+SGK+LCYNLPVL+A++ + SS ALY+FPTKALAQDQ L +
Sbjct: 64 DAVQSGRNIVAVTPTASGKTLCYNLPVLDAIAKEPSSRALYIFPTKALAQDQKNELNEII 123
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
SI YDGDT R +R ++ITNPDMLH +ILP+H ++ + L
Sbjct: 124 AEMGVSIYSHTYDGDTAPALRQKIRQAGHIVITNPDMLHTAILPHHTKWISLFEQL---- 179
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
R+VVIDE H Y+G FG H A ++RRL R+C+ YGS P+F+ ++A
Sbjct: 180 ---------------RYVVIDELHTYRGVFGSHVANVIRRLKRICA-FYGSRPTFICTSA 223
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T ANP+E L + LI N+G+P +K FV +NP R++ + R +A
Sbjct: 224 TIANPKELAERLIG-EPVALIDNNGAPRGRKYFVFYNPPVVERTM---------NIRQSA 273
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYR 564
KT+ ++ +++ + + I F RSR EL+LS+ + ++ E +I YR
Sbjct: 274 TKTAVELAR------QLLVNRIPTIVFARSRVRVELILSHLQAVVNERIGD--TTIRGYR 325
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
GY+ +RR IE+ G++ GV +TNALELG+D+G + + G+PG+IAS WQQAGR+
Sbjct: 326 GGYLPNERRAIEKGLRSGEIIGVVSTNALELGVDIGQLQACILTGYPGTIASTWQQAGRA 385
Query: 625 GRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
GRR+ SL V +A PLDQY + +PE F E I+ N +L H+ CAA E P
Sbjct: 386 GRRQGDSLVVMIASASPLDQYIISHPEYFFARSPEAARINPDNLLILVDHIKCAAYELPF 445
Query: 685 SLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESE 744
+ FG G+ + +L+ L+ A + ++ + P+H IS+R+ E
Sbjct: 446 R---RGETFG-----GVEVEEVLDFLAEQGVLNERAGRWHWMS-DAFPAHDISLRSAAQE 496
Query: 745 RYEVIDMQS---NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADL 801
+ID+ + V+ E++ A +++ A+Y+H+G Y V++L+ K A ++ D+
Sbjct: 497 NVVIIDISDTAHHRVIGEMDRFSAMTLLHDEAIYLHEGAQYQVEKLDWEEKKAYVRQVDV 556
Query: 802 KYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIF 861
+YFT + V + + + + +A+A + GSG I
Sbjct: 557 EYFTDANLAVRLDVLSEDRSETRGQMAVRYGDVSVRAMATIFKKLKLSTFENI-GSGPI- 614
Query: 862 DTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFS---FRSGLHAASHALLHVVPIYVRCN 918
LP+ + + A WI+ V FS F L ++ L H+VP++V C+
Sbjct: 615 -----RLPEETLHTSAAWIE-----WEAVPSRFSPALFEQLLVGIANVLGHLVPVFVMCD 664
Query: 919 FSDL--APECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
SDL P+ PH R I LYDR+PGG G+S+ V
Sbjct: 665 RSDLHVVPQLKAPHSGR---PTIFLYDRYPGGVGLSEAV 700
>gi|302389385|ref|YP_003825206.1| DEAD/DEAH box helicase [Thermosediminibacter oceani DSM 16646]
gi|302200013|gb|ADL07583.1| DEAD/DEAH box helicase domain protein [Thermosediminibacter oceani
DSM 16646]
Length = 753
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 256/741 (34%), Positives = 397/741 (53%), Gaps = 66/741 (8%)
Query: 224 EDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGK 283
E I + A PD L AL GI LYSHQA ++ G +VVV T T+SGK
Sbjct: 24 EVIPPKAAEYEPFPDYLDKRLILALNKKGIHSLYSHQAIALDEVTKGNSVVVVTPTASGK 83
Query: 284 SLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQK 343
+LCYNLPVL A+ D +S A+Y+FPTKAL+QDQ+ L+ +A I YDGDT
Sbjct: 84 TLCYNLPVLNAILQDKNSRAIYLFPTKALSQDQVAELMETVEAMGEDIKTFTYDGDTPPS 143
Query: 344 DRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVV 403
R+ +R + +++TNPDMLH ILP+H ++ ++ SNL ++VV
Sbjct: 144 ARVAIRKDGHIIVTNPDMLHTGILPHHTKWIKLFSNL-------------------KYVV 184
Query: 404 IDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLE 463
IDE H Y+G FG HTA +LRRL R+C YGS+P F+ +AT ANP+E +L +
Sbjct: 185 IDEVHTYRGVFGSHTANVLRRLHRIC-RFYGSNPVFICCSATIANPKELAEKLTG-RQMV 242
Query: 464 LIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQ 523
LI G+P +K + +NP V+N R + SS + E L + ++
Sbjct: 243 LIDRSGAPSGEKNVIFYNP-----PVVN---------RQLGIRKSS-LLEAKNLALDFLK 287
Query: 524 HGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGK 583
+G++ I F RSR E++L+Y +E + +T DSI YR GY+ +RR IE+ +
Sbjct: 288 NGIKTIVFARSRLAVEVMLTYLKEGMRDTLKG-SDSIRGYRGGYLPRERREIEKGLRENR 346
Query: 584 LCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLD 643
+ GV +TNALELGID+G +DV++ G+PGSIAS WQQAGR+GRR S ++ VA PLD
Sbjct: 347 ILGVVSTNALELGIDIGGLDVSIITGYPGSIASTWQQAGRAGRRSAVSASILVASSSPLD 406
Query: 644 QYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITT 703
QY + +P+ F SP E I+ N +L H+ CAA E P D + FG + I +
Sbjct: 407 QYIINHPDYFFGSPPESGLINPDNLYILVSHIKCAAFELPFE---DGEKFGVETTEEILS 463
Query: 704 LKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDM-QSNEVLEEIEE 762
+L S+ L + ++ + P+ IS+R+ +E + V+D+ + V+ E++
Sbjct: 464 -----FLESEKILRHVGGRWHWMA-DAFPAEEISLRSASTENFVVVDITEEPRVIGEVDR 517
Query: 763 SKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAY 822
+ A ++E A+Y+H G Y V++L+ K A +K D+ Y+T +I V +
Sbjct: 518 ASAPMLIHEEAIYIHGGQQYQVEKLDYEEKKAYVRKVDVDYYTDANLAVEIKVL---DVL 574
Query: 823 ATKISKDQLTKTTAQALACTVTTTWFG---FYRLWRGSGIIFDTVELYLPKYSYESQAVW 879
+ +++ K + L ++ T + F GSG I +LP + A W
Sbjct: 575 KEQHRREETAKYFGEVLVTSLATMFKKIKFFTHENVGSGPI------HLPPEEMHTTAFW 628
Query: 880 IQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDL--APECPNPHDSRYFPE 937
VP++V+ + ++ RSGL + L+++ P+Y+ C+ D+ + +P +
Sbjct: 629 FTVPETVRGLTAED--LRSGLAGLCNVLVNIAPLYLMCDPRDIRGVIQVRSPFTQK---P 683
Query: 938 RILLYDRHPGGTGVSKQVTDM 958
I +YD +PGG G ++++ M
Sbjct: 684 TIFIYDAYPGGVGFAERLYQM 704
>gi|375102913|ref|ZP_09749176.1| helicase/secretion neighborhood putative DEAH-box helicase
[Saccharomonospora cyanea NA-134]
gi|374663645|gb|EHR63523.1| helicase/secretion neighborhood putative DEAH-box helicase
[Saccharomonospora cyanea NA-134]
Length = 799
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 259/744 (34%), Positives = 380/744 (51%), Gaps = 60/744 (8%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+ H+ D+ AR A + PD + AL+++G+ K ++HQ E+ + +G+NVVVAT T
Sbjct: 28 VTHIADLPARDARFTDWPDWVPGTVLDALRASGVDKPWNHQVEAASLARSGRNVVVATGT 87
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGD 339
SSGKSL Y LPVL L+ D ++ALY+ PTKALA DQLR++ M + YDGD
Sbjct: 88 SSGKSLAYQLPVLSTLATDSKATALYLSPTKALAGDQLRSVSDMDVE---GVRPARYDGD 144
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T Q +R W+RD+AR + +NPDMLH +LP H +++R F +
Sbjct: 145 TPQSERAWVRDHARWVFSNPDMLHRGVLPAHPRWARF-------------------FRGL 185
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
+VV+DE H Y+G FG H AL+LRRL R+ YG+DP FV ++AT+A+P E L
Sbjct: 186 SYVVVDECHGYRGVFGSHVALLLRRLRRISR-RYGADPVFVLASATTADPAEFATRLVGA 244
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
+ + +D SP + LW P +L + + D A S +E + + A
Sbjct: 245 DCVA-VTDDASPHGARTVALWEP-----PLLEELTGEHD-----APVRRSAGAEAARILA 293
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDF 579
E+V G R +AF RSR+ EL R IL E AP L D + YRAGY+ E+RR +E
Sbjct: 294 ELVIEGARTLAFVRSRRGAELTALGARRILAEVAPELADKVAAYRAGYLPEERRELESAL 353
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFE 639
GG+L GVA TNALELG+D+ +D + G+PG++AS WQQ+GR+GR +L V+VA +
Sbjct: 354 LGGRLLGVATTNALELGVDISGLDAVVLAGYPGTLASFWQQSGRAGRAGDDALVVFVARD 413
Query: 640 GPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSS 699
PLD Y +P+ L + P+E +D N VL HL CAA E L + G +
Sbjct: 414 DPLDTYLAHHPKALLERPVEAAVLDPTNPYVLAPHLACAAAESALRSSELGDFGGDAARA 473
Query: 700 GITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEE 759
+ L L PS Y P + IR E+ V++ ++ +L
Sbjct: 474 VLDGLVADSLLRRRPS-------GWYWTARDRPHSDVDIRGAGVEQIAVVESDTSRLLGT 526
Query: 760 IEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGN 819
++ S A V+ GAVY+H+G +Y+V EL+L IA D ++ T R+ DI V
Sbjct: 527 VDGSSACGTVHPGAVYLHRGESYVVDELDLEQGIAFVHAEDPEWTTSAREAADIEV---- 582
Query: 820 NAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVW 879
+ + T VT+ G+ R SG + D V L LP+ ++AVW
Sbjct: 583 ---LDTVERRTYGGVTVNLGHVAVTSRVVGYLRRLP-SGEVLDHVPLDLPEQVLHTRAVW 638
Query: 880 IQVPQSV---------KAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPH 930
+ + A VE LHAA HA + ++P++ C+ D+ H
Sbjct: 639 YTIDAQLLCGTHKEPGGAGVEPA-RVPGALHAAEHAAIGLLPLFATCDRWDIGGVSTAVH 697
Query: 931 DSRYFPERILLYDRHPGGTGVSKQ 954
+ + ++D HPGG G + +
Sbjct: 698 -ADTGEATVFVHDGHPGGAGFADR 720
>gi|297530260|ref|YP_003671535.1| DEAD/DEAH box helicase [Geobacillus sp. C56-T3]
gi|297253512|gb|ADI26958.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. C56-T3]
Length = 758
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 262/759 (34%), Positives = 400/759 (52%), Gaps = 74/759 (9%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E +E LR+ +V+ +I ++A V PD L +ALK+ GI+ LY+HQA +
Sbjct: 8 EWIEQLRQ----DPNVVYWHEIEPKEANFVPFPDELDPRLGAALKARGIASLYTHQAAAY 63
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
A +G+N+V T T+SGK+LCYNLPVL+A++ + SS ALY+FPTKALAQDQ L +
Sbjct: 64 DAVQSGRNIVTVTPTASGKTLCYNLPVLDAIAKEPSSRALYIFPTKALAQDQKNELNEII 123
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
SI YDGDT R +R ++ITNPDMLH +ILP+H ++ + L
Sbjct: 124 AEMGVSIYSHTYDGDTAPALRQKIRQAGHIVITNPDMLHTAILPHHTKWISLFEQL---- 179
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
R+VVIDE H Y+G FG H A ++RRL R+C+ YGS P+F+ ++A
Sbjct: 180 ---------------RYVVIDELHTYRGVFGSHVANVIRRLKRICA-FYGSRPTFICTSA 223
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T ANP+E L + LI N+G+P +K FV +NP R++ + R +A
Sbjct: 224 TIANPKELAERLIG-EPVTLIDNNGAPRGRKYFVFYNPPVVERTM---------NIRQSA 273
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYR 564
KT+ ++ +++ + + I F RSR EL+LS+ + ++ E +I YR
Sbjct: 274 TKTAVELAR------QLLVNRIPTIVFARSRVRVELILSHLQAVVNERIGD--TTIRGYR 325
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
GY+ +RR IE+ GK+ GV +TNALELG+D+G + + G+PG+IAS WQQAGR+
Sbjct: 326 GGYLPNERRAIEKGLRSGKIIGVVSTNALELGVDIGQLQACILTGYPGTIASTWQQAGRA 385
Query: 625 GRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
GRR+ SL V +A PLDQY + +PE F E I+ N +L H+ CAA E P
Sbjct: 386 GRRQGDSLVVMIASASPLDQYIISHPEYFFARSPEAARINPDNLLILVDHIKCAAYELPF 445
Query: 685 SLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESE 744
+ FG G+ + +L+ L+ A + ++ + P+H IS+R+ E
Sbjct: 446 R---RGETFG-----GVEVEEVLDFLAEQGVLNERAGRWHWMS-DAFPAHDISLRSAAQE 496
Query: 745 RYEVIDMQS---NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADL 801
+ID+ + V+ E++ A +++ A+Y+H+G Y V++L+ K A ++ D+
Sbjct: 497 NVVIIDISDTARHRVIGEMDRFSAMTLLHDEAIYLHEGAQYQVEKLDWEEKKAYVRQVDV 556
Query: 802 KYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIF 861
+YFT + V + + + + +A+A + GSG I
Sbjct: 557 EYFTDANLAVRLDVLSEDRSETRGQMAVRYGDVSVRAMATIFKKLKLSTFENI-GSGPI- 614
Query: 862 DTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFS---FRSGLHAASHALLHVVPIYVRCN 918
LP+ + + A WI+ V FS F L ++ L H+VP++V C+
Sbjct: 615 -----RLPEETLHTSAAWIE-----WEAVPSRFSPALFEQLLVGIANVLGHLVPVFVMCD 664
Query: 919 FSDL--APECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
SDL P+ PH R I LYDR+PGG G+S+ V
Sbjct: 665 RSDLHVVPQLKAPHSGR---PTIFLYDRYPGGVGLSEAV 700
>gi|340959973|gb|EGS21154.1| ATP-dependent helicase-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1198
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 281/776 (36%), Positives = 412/776 (53%), Gaps = 73/776 (9%)
Query: 205 EMVEHLRKGIGSQGQMVHVED--ISARKAVLVEIPDALLDNTKSAL-KSTGIS--KLYSH 259
E+VE L+ GQ+V + ++A+ E+ L + +AL S GI+ +LYSH
Sbjct: 373 EIVEELKCSSWYVGQIVPDGHRVLDPQEAIYGELNFPLGQDLVNALYNSKGITPDRLYSH 432
Query: 260 QAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRA 319
QA +I A AG +VVVAT TSSGKSL Y LPVL L D ++ A+Y+FPTKALAQDQ R+
Sbjct: 433 QAAAINALHAGHHVVVATSTSSGKSLVYQLPVLHVLEEDKNARAMYIFPTKALAQDQKRS 492
Query: 320 LLAMTKAFDA--SIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRIL 377
L + + I + YDGDT Q+ R +R+NA ++ TNPDMLH +LP + L
Sbjct: 493 LQELISWMPSLEGIVVETYDGDTPQEYRRSIRENASVIFTNPDMLHAGVLPQEEGWRMFL 552
Query: 378 SNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDP 437
LR +VV+DE H Y G G H A ++RRL R+C+ + SD
Sbjct: 553 KGLR-------------------YVVVDELHYYNGLLGSHVAWVMRRLRRVCAALGNSDV 593
Query: 438 SFVFSTATSANPREHCMELANLS-TLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTD 496
FV +AT ANP H L + + +I DGSP +K F++WN K D
Sbjct: 594 KFVSCSATVANPEGHFRRLFGIEDNVTVIDFDGSPSGRKEFLVWN-------TPYKVPGD 646
Query: 497 MDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCE-LVLSYTREILEETAPH 555
R A + E S LF +++ G+R IAFCR R+ CE LV + +E+
Sbjct: 647 PSSGRGNA------LLECSRLFCQLILRGVRTIAFCRVREQCEKLVAAVKKELESLDRGE 700
Query: 556 LVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIA 615
+ + YR GY A+DRR+IE D F G+L G+ AT ALELG+D+G +D L GFP +IA
Sbjct: 701 VAGRVMAYRGGYTAQDRRQIEADMFSGRLVGIVATTALELGVDIGTLDCVLTWGFPYTIA 760
Query: 616 SLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHL 675
+L QQ+GR+GRR + SLA+ V DQY+M++P++LF P ID N V E HL
Sbjct: 761 NLRQQSGRAGRRNKDSLAILVGDAFATDQYYMQHPDELFSRPNCALQIDLDNLLVKEGHL 820
Query: 676 VCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGH-EKMPSH 734
CAA E P+ D+ YFG L L ++ + + H P
Sbjct: 821 QCAAGEMPIHPEQDKIYFGPDLPQ----------LCAERLIPDDEGFYHCHDHFRPFPWR 870
Query: 735 TISIRAIESERYEVIDMQS--NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSK 792
+SIR +E +++ ++D + N VLEE++ S+A F +Y+GA+++HQG TYLV++ + K
Sbjct: 871 FVSIRDVEEDKFAIVDTTNGRNVVLEELDASRATFTIYDGAIFLHQGTTYLVRDFSPDRK 930
Query: 793 IALCQKADLKYFTKTRDYTDIHVSGGNNAYAT-KISKDQLTKTTAQALACTVTTTWFGFY 851
IA +K + Y T RD+TD+ + AT I Q + A +T FGF+
Sbjct: 931 IARVEKVKVDYLTSQRDFTDV------DPIATLAIKPLQGSPYKAYYGTIRITQVVFGFF 984
Query: 852 RL-WRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVE-QNFSFRSGLHAASHALLH 909
++ R I D V ++ P S+ +W+ +P +++ + + + +HAA HAL
Sbjct: 985 KVDPRRGNKILDAVPVHNPPVVRYSKGMWLDIPACALDILKARKHNPAAAIHAAQHALAS 1044
Query: 910 VVPIYVRCNF-SDLAPECPNP-------HDSRYFPERILLYDRH--PGGTGVSKQV 955
+VP +V + +D+ EC +P +R P R+ LYD PGG G++ +
Sbjct: 1045 LVPTFVMSSTQADIRTECKSPIKEFARRPTNRKRPARLALYDAKGGPGGAGINTKA 1100
>gi|408391277|gb|EKJ70657.1| hypothetical protein FPSE_09167 [Fusarium pseudograminearum CS3096]
Length = 1175
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 252/730 (34%), Positives = 395/730 (54%), Gaps = 76/730 (10%)
Query: 250 STGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPT 309
+ GI++ ++HQ+E++ + GK+VVV+T TSSGKSL Y LPV+ AL D +S A+Y+FPT
Sbjct: 370 AKGITQFFAHQSEALNSLQDGKHVVVSTSTSSGKSLIYQLPVIRALEEDFNSRAIYIFPT 429
Query: 310 KALAQDQLRALLAMTKAFDA--SIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSIL 367
KALAQDQ R+L M + I +DGDT +R +R+ AR++ TNPDMLH++IL
Sbjct: 430 KALAQDQKRSLKDMVRYMPGLEETMIETFDGDTPMTERNDIREQARVIFTNPDMLHITIL 489
Query: 368 PYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCR 427
P ++ L NL+ +VV+DE H Y G G H + I+RRL R
Sbjct: 490 PQEERWRSFLKNLK-------------------YVVVDELHYYNGQMGSHMSFIMRRLRR 530
Query: 428 LCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLR 487
+C+ V F+ +AT ANP +H + + ++LI DGSP +K F+ WN
Sbjct: 531 ICTAVGNRRVKFISCSATVANPEQHFRTIFGIENVQLIDYDGSPSGRKEFLCWN------ 584
Query: 488 SVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTRE 547
T D + A+ S E + LF ++ G+R IAFCR R CEL+++ R+
Sbjct: 585 -------TPYKDPGDPASGRGSTKFECARLFCALMLRGVRIIAFCRVRAQCELLVATIRQ 637
Query: 548 ILEETA-PHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTL 606
LE P + + YR GY A+DRRRIE + F G+L G+ AT ALELGID+G +D +
Sbjct: 638 ELENLGRPECTNLVMGYRGGYTAQDRRRIETEMFQGRLLGIVATTALELGIDIGSLDCVM 697
Query: 607 HLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQ 666
GFP +IA+L QQ+GR+GRR + SL++ V DQ++M+ P+ LF P +D +
Sbjct: 698 TWGFPYTIANLRQQSGRAGRRNKDSLSILVGDGFATDQHYMQNPDDLFTKPNCELQVDLE 757
Query: 667 NHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYI 726
N V E H+ CAA E P+ D KYFG L P + I + +
Sbjct: 758 NMLVREGHIQCAAYEMPIRPREDAKYFGKDL----------------PKICVERLIRDDM 801
Query: 727 G----HEK---MPSHTISIRAIESERYEVIDMQS--NEVLEEIEESKAFFQVYEGAVYMH 777
G H++ +P+ ++IR E + + ++D+ + N VLEE+E S+A F +Y+GA+++H
Sbjct: 802 GFFHCHDRFRPIPAKYVAIRDTEDDHFAIVDITNGRNIVLEELEASRATFTLYDGAIFLH 861
Query: 778 QGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQ 837
QG+ YLV++ +A ++ +++ T RDYTDI + A + D +++ A
Sbjct: 862 QGNPYLVRDFQPDKGMARVERVKVEWTTVQRDYTDIDPT---ETEAIRTISD--SRSHAY 916
Query: 838 ALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVV-EQNFSF 896
+ FGF+++ + + ++ D V++ P S+ +W+ VP+ +++ E+
Sbjct: 917 YGTIKIQQNVFGFWKVDKKNRVL-DAVQVDNPPVIRFSKGMWLDVPKKAMSILQERRLHI 975
Query: 897 RSGLHAASHALLHVVPIYVRCNFSDLAPECPNP-------HDSRYFPERILLYDRH--PG 947
+ +HAA HA++ ++P +V D+ EC R P R+ YD G
Sbjct: 976 AAAIHAAEHAIMSLLPAFVISMPGDVRTECKTAVKEFAKQESQRKRPARLTFYDAKGGAG 1035
Query: 948 GTGVSKQVTD 957
G+G+S + D
Sbjct: 1036 GSGISTKAFD 1045
>gi|415885264|ref|ZP_11547192.1| ATP-dependent RNA helicase yprA [Bacillus methanolicus MGA3]
gi|387590933|gb|EIJ83252.1| ATP-dependent RNA helicase yprA [Bacillus methanolicus MGA3]
Length = 767
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 255/742 (34%), Positives = 397/742 (53%), Gaps = 66/742 (8%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+VH I R+A VE+P+ + + + AL++ GI +LY+HQ + A + K++V T T
Sbjct: 24 IVHWHTIEEREAKTVELPEEIHPSLRQALENRGIKRLYTHQKSAYDAVMDNKSIVAVTPT 83
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGD 339
+SGK+LCYNLPVLE + ++ ++ ALY+FPTKALAQDQ + + + SI+ YDGD
Sbjct: 84 ASGKTLCYNLPVLETIINNPNARALYIFPTKALAQDQKSEINELIQETGVSINSYTYDGD 143
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T R +R ++ITNPDMLH +ILP+H ++ + NL
Sbjct: 144 TPSNIRQKVRKAGHIVITNPDMLHSAILPHHTKWVSLFENL------------------- 184
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
++VVIDE H Y+G FG H A ++RRL R+C YG+DP F+ ++AT ANP E L
Sbjct: 185 KYVVIDELHIYRGVFGSHVANVIRRLRRIC-RFYGTDPIFICTSATIANPLELAESLTE- 242
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
+ELI N+G+P +K F+ +NP V+NK N S E L
Sbjct: 243 KKMELIDNNGAPSGRKHFLFYNP-----PVVNK----------PLNIRRSATLEARKLAG 287
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDF 579
E++++ ++ I F RSR E++L+Y +++++ SI YR GY+ +RR IE+
Sbjct: 288 ELLKNKIQTIVFARSRVRVEILLTYLQDLVKHQLGE--KSIRGYRGGYLPTERREIEKGL 345
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFE 639
G++ GV +TNALELG+D+G + V + G+PG+IAS WQQAGR+GRR SL + VA
Sbjct: 346 RSGEIYGVVSTNALELGVDIGQLQVCIMTGYPGTIASAWQQAGRAGRRHGESLVILVASS 405
Query: 640 GPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSS 699
PLDQY ++ P+ F E I+ N +L H+ CAA E P EK FGS +
Sbjct: 406 SPLDQYIIQNPDFFFNKSPETARINPDNLIILVDHIKCAAYELPFK--RGEK-FGSAETE 462
Query: 700 GITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN----E 755
I +L+ + L + + Y ++ P+H IS+R+ E +ID QS+ +
Sbjct: 463 DILE-----FLAEERVLFQNGDKW-YWMNDSFPAHNISLRSASQENVVIID-QSDAANVK 515
Query: 756 VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHV 815
V+ E++ A ++E A+Y+HQG Y V++L+ K A ++ D+ YFT + V
Sbjct: 516 VIGEMDRFSAMTLLHEEAIYLHQGIQYQVEKLDWEEKKAYVREVDVDYFTDANLAVQLKV 575
Query: 816 SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYES 875
+ ++ + A+A F + GSG I +LP+ +
Sbjct: 576 LEVDKTRNDNRTEIAFGDVSVHAMATIFKKIKFETHENI-GSGPI------HLPEEELHT 628
Query: 876 QAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDL--APECPNPHDSR 933
+ WI + + +K + GL A+HAL H+ P++V C+ D+ P+ H+ +
Sbjct: 629 NSAWISLQKELKDFGQDRLE--QGLIGAAHALKHIAPLFVMCDPQDIHVVPQVKAAHNEK 686
Query: 934 YFPERILLYDRHPGGTGVSKQV 955
I YDR+PGG G+S+++
Sbjct: 687 ---PTIFFYDRYPGGIGLSEKI 705
>gi|46110126|ref|XP_382121.1| hypothetical protein FG01945.1 [Gibberella zeae PH-1]
Length = 1644
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 265/778 (34%), Positives = 416/778 (53%), Gaps = 79/778 (10%)
Query: 205 EMVEHLRKGIGSQGQMVHVED--ISARKAVLVEIPDALLDNTKSAL-KSTGISKLYSHQA 261
E+V+ LR+ GQ+V + V ++ L N +AL + GI++ ++HQ+
Sbjct: 791 EIVQELRESPWYTGQIVPDGHRVFEQQDPVYGDLNFLLSQNLVNALYNAKGITQFFAHQS 850
Query: 262 ESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALL 321
E++ + GK+VVV+T TSSGKSL Y LPV+ AL D +S A+Y+FPTKALAQDQ R+L
Sbjct: 851 EALNSLHDGKHVVVSTSTSSGKSLIYQLPVIRALEEDYNSRAIYIFPTKALAQDQKRSLK 910
Query: 322 AMTKAFDA--SIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSN 379
M + I +DGDT +R +R+ AR++ TNPDMLH++ILP Q+ L N
Sbjct: 911 DMMRYMPGLEETMIETFDGDTPMTERNDIREQARVIFTNPDMLHITILPQEEQWRSFLKN 970
Query: 380 LRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSF 439
L+ +VV+DE H Y G G H + I+RRL R+C+ V F
Sbjct: 971 LK-------------------YVVVDELHYYNGQMGSHMSFIMRRLRRICAAVGNRRVKF 1011
Query: 440 VFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDD 499
+ +AT ANP +H + + ++LI DGSP +K F+ WN T D
Sbjct: 1012 ISCSATVANPGQHFRTIFGIENVQLIDYDGSPSGRKEFLCWN-------------TPYKD 1058
Query: 500 TRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETA-PHLVD 558
+ A+ S E + LF ++ G+R IAFCR R CEL+++ R+ LE P +
Sbjct: 1059 PGDPASGRGSTKFECARLFCALMLRGVRIIAFCRVRAQCELLVTTIRQELENLGRPECTN 1118
Query: 559 SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLW 618
+ YR GY A+DRRRIE + F G+L G+ AT ALELGID+G +D + GFP +IA+L
Sbjct: 1119 LVMGYRGGYTAQDRRRIETEMFQGQLLGIVATTALELGIDIGSLDCVMTWGFPYTIANLR 1178
Query: 619 QQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCA 678
QQ+GR+GRR + SL++ V DQ++M+ P+ LF P +D +N V E H+ CA
Sbjct: 1179 QQSGRAGRRNKDSLSILVGDGFATDQHYMQNPDDLFTKPNCELQVDLENMLVREGHIQCA 1238
Query: 679 ALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIG----HEK---M 731
A E P+ D KYFG L P + I + +G H++ +
Sbjct: 1239 AYEMPIRPREDAKYFGKDL----------------PKICVERLIRDDMGFFHCHDRFRPI 1282
Query: 732 PSHTISIRAIESERYEVIDMQS--NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNL 789
P+ ++IR E + + ++D+ + N VLEE+E S+A F +Y+GA+++HQG+ YLV++
Sbjct: 1283 PAKYVAIRDTEDDHFAIVDITNGRNIVLEELEASRATFTLYDGAIFLHQGNPYLVRDFQP 1342
Query: 790 SSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFG 849
+A ++ +++ T RDYTDI + A + D +++ A + FG
Sbjct: 1343 DKGMARVERVKVEWTTVQRDYTDIDPT---ETEAIRTISD--SRSHAYYGTIKIQQNVFG 1397
Query: 850 FYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVV-EQNFSFRSGLHAASHALL 908
F+++ + + ++ D V++ P S+ +W+ VP++ +++ E+ + +HAA HA++
Sbjct: 1398 FWKVDKKNRVL-DAVQVDNPPVIRFSKGMWLDVPKTAMSILQERRLHIAAAIHAAEHAIM 1456
Query: 909 HVVPIYVRCNFSDLAPECPNP-------HDSRYFPERILLYDRH--PGGTGVSKQVTD 957
++P +V D+ EC R P R+ YD GG+G+S + D
Sbjct: 1457 SLLPAFVISMPGDVRTECKTAVKEFAKQESQRKRPARLTFYDAKGGAGGSGISTKAFD 1514
>gi|374851344|dbj|BAL54307.1| ATP-dependent RNA helicase, DEAD [uncultured prokaryote]
Length = 789
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 266/773 (34%), Positives = 391/773 (50%), Gaps = 85/773 (10%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATM 278
++VHV + A I L + + AL++ G+ LYSHQA ++ A+ G+NVVV +
Sbjct: 19 RVVHVHLLEATAGRTGTISRPLPEALERALRAQGVGVLYSHQAMALEAARRGENVVVVSG 78
Query: 279 TSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDG 338
T+SGK+LCYNLPVLE++ + ++A Y+FPTKALA+DQL L + + GVYDG
Sbjct: 79 TASGKTLCYNLPVLESVLTNPYTTAFYLFPTKALARDQLEKLNDL--GLFPQVRFGVYDG 136
Query: 339 DTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLF 398
DT Q +R +R A +++TNPDMLH+ ILP H ++ L LR
Sbjct: 137 DTPQHERASIRRGAHIVLTNPDMLHVGILPNHSSWASFLRKLR----------------- 179
Query: 399 IRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELAN 458
+VV+DE HAY+G FG H AL+LRRL + YG+ P F+ ++AT NP+E L
Sbjct: 180 --YVVVDEMHAYRGVFGSHVALVLRRLR-RLAEFYGAKPQFILTSATVGNPQETAETLTG 236
Query: 459 LSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLF 518
L LIQ DG+P Q+ FVLWNP + + T++ E + +
Sbjct: 237 LPC-TLIQEDGAPRPQRYFVLWNP-PIIGENFERLSTNV---------------ESAAIM 279
Query: 519 AEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERD 578
+ + G + F ++R EL+L Y E+ E AP L + YRAGY E RR IER
Sbjct: 280 TALAETGWSTLVFAKARVTTELILRYAHELAERRAPDLKQRLMSYRAGYTPEQRREIERR 339
Query: 579 FFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAF 638
F G+L GV +TNALELG+D+G +DV + G+PGSI S WQQAGR+GRR+R ++ + VA
Sbjct: 340 LFSGELLGVVSTNALELGVDIGGLDVVVMAGYPGSITSTWQQAGRAGRRDREAMIILVAQ 399
Query: 639 EGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSG-- 696
PLDQY M++PE LF P+E ++ NH +L HL CAA E PL D FG
Sbjct: 400 NEPLDQYLMRHPEYLFGKPVEQVRLNPTNHPILRAHLCCAAHEKPLE-PDDYTLFGDAEI 458
Query: 697 LSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEV 756
S I L G L + + + + G P+ +SIR E + + S
Sbjct: 459 CMSAIAELMGEGKLGA-----REGRWYYFGG--GYPAAEVSIRTASGESVIIRESTSGME 511
Query: 757 LEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVS 816
L +E +A+ V+ GA+Y+HQG +Y ++ L+ ++A Y+T+ ++ V
Sbjct: 512 LGRVEMERAYRTVHPGAIYLHQGESYFIESLDDVQRVATASPVWADYYTEPLVRVELQV- 570
Query: 817 GGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQ 876
T+ ++ Q+ K A V+ GF R SG + D L +P+ SY+++
Sbjct: 571 -----LRTRATR-QMGKIEAGFGDVRVSEQVIGFRRKHLRSGEVIDMEPLAMPEQSYDTE 624
Query: 877 AVWIQV-------------PQSVKAVVE---------------QNFSFRSGLHAASHALL 908
W+ P V++ ++ + +H A HAL
Sbjct: 625 GAWLAFDMLQFSLAQAETHPHRGGDVLDILALLARDMDRTTLSRSADWVMAMHGAEHALQ 684
Query: 909 HVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDMKMN 961
VVP+ C D+ + + + I LYD PGGTG+SK + N
Sbjct: 685 AVVPLTCGCERMDVGSSFTWLYPA-FGRSAIFLYDTSPGGTGISKGAYEQMEN 736
>gi|407641560|ref|YP_006805319.1| ATP-dependent RNA helicase [Nocardia brasiliensis ATCC 700358]
gi|407304444|gb|AFT98344.1| ATP-dependent RNA helicase [Nocardia brasiliensis ATCC 700358]
Length = 769
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 261/747 (34%), Positives = 389/747 (52%), Gaps = 45/747 (6%)
Query: 210 LRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLA 269
L G GS ++ H ++ AR A + PD +AL+ TGI +SHQ + +
Sbjct: 6 LADGTGSDSRLTHAVELPARAAAVTTWPDWASPEVVAALQDTGIDTPWSHQTRTADLAFG 65
Query: 270 GKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT-KAFD 328
G +VVV+T T+SGKSL Y LPVL AL D ++ALY+ PTKAL DQLRA+ +T +
Sbjct: 66 GAHVVVSTGTASGKSLGYQLPVLTALQRDPRATALYLAPTKALGADQLRAVGTLTHEGPL 125
Query: 329 ASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLV 388
I YDGDT + R W+R NAR + TNPDMLH+ IL H +++R+L LR
Sbjct: 126 RDIHPATYDGDTPAEIRQWVRANARWVFTNPDMLHVGILRSHQRWARVLRRLR------- 178
Query: 389 TTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSAN 448
+VVIDE HAY+G FG H AL+LRRL R+ + YG+DP FV +AT+A
Sbjct: 179 ------------YVVIDECHAYRGVFGSHVALVLRRLRRIAA-RYGADPVFVLCSATTAE 225
Query: 449 PREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTS 508
P L + + DGSP + LW P L +V + N A
Sbjct: 226 PAAAAARLIG-APCAAVTEDGSPQGPRTVALWEP-PLLTAVTGE---------NGAPVRR 274
Query: 509 SPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYV 568
+ +E + + A++V G R + F RSR+ EL R +L E P L + + YRAGY+
Sbjct: 275 AATTEAARIMADLVVEGARTLTFVRSRRAAELTAMDARRLLLEVDPSLAERVAAYRAGYL 334
Query: 569 AEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRE 628
AEDRR +E+ G L G A TNALELG+D+ +D + GFPG++AS WQQAGR+GRR
Sbjct: 335 AEDRRDLEQALSDGSLLGAATTNALELGVDIAGLDAAVICGFPGTVASFWQQAGRAGRRT 394
Query: 629 RPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIY 688
+ SL V VA + PLD Y + +PE L P+E D N VL L+CAALE PL+
Sbjct: 395 QGSLVVLVARDDPLDTYLVHHPEALLDKPVEATITDPHNPYVLGPQLLCAALELPLTDTE 454
Query: 689 DEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEV 748
+++ G +T L +G + ++ + Y+ E P + +R +
Sbjct: 455 VDEF---GAREILTELAAQGLIRRRAVKGAADRGRWYVTAETQPHDAVDVRGGIGTPVAI 511
Query: 749 IDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTR 808
+D ++ +L + +A +++GAV++HQG +Y+V EL+L +A A+ + T R
Sbjct: 512 VDGETGRLLGTADAGRAPATLHQGAVHLHQGESYVVDELDLEDGVAFVHAAEPGWTTSAR 571
Query: 809 DYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYL 868
T I + +A + +T A+ VT+ G+ R +G + D VEL +
Sbjct: 572 SVTSIAI----DAMTDQHRHGHVTTALAK---VRVTSQVIGYLRTLV-TGEVLDLVELDM 623
Query: 869 PKYSYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECP 927
P+++ ++AV V P+ + + + LHAA HA + ++P+ C+ D+
Sbjct: 624 PEHTLPTRAVLYTVSPELLTLAGIEPAAVPGALHAAEHAAIGLLPLVATCDRWDIGGVSI 683
Query: 928 NPHDSRYFPERILLYDRHPGGTGVSKQ 954
H P + +YD PGG G +++
Sbjct: 684 AEHPDTGLPT-VFVYDGQPGGAGFAER 709
>gi|453076865|ref|ZP_21979631.1| dead/deah box helicase [Rhodococcus triatomae BKS 15-14]
gi|452760436|gb|EME18770.1| dead/deah box helicase [Rhodococcus triatomae BKS 15-14]
Length = 770
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 251/743 (33%), Positives = 383/743 (51%), Gaps = 53/743 (7%)
Query: 215 GSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVV 274
G + + H+ ++ AR++ P+ AL+ +G+ ++HQ ++ + G NVV
Sbjct: 19 GHETPLTHIAELPARESTYATWPEWAHPGVVDALRESGVPMPWTHQEQAATLAARGTNVV 78
Query: 275 VATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDI- 333
VAT T+SGKSL Y LPVL AL+ D ++ALY+ PTKAL DQ+RA +A+ + +D
Sbjct: 79 VATGTASGKSLAYQLPVLTALADDPRATALYLAPTKALGADQIRATVALCDGTEELVDAY 138
Query: 334 -GVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEV 392
+DGDT + R W+R N+R + TNPDMLH+ +L H +++ NLR
Sbjct: 139 PSAFDGDTPTEVRQWVRANSRWVFTNPDMLHIGMLRSHQRWAHFFRNLR----------- 187
Query: 393 YLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREH 452
+VV+DE H+Y+G FG + AL+LRRL R+ +H Y +DP FV ++AT+++P
Sbjct: 188 --------YVVVDECHSYRGVFGSNVALVLRRLRRI-AHRYAADPVFVLASATTSDPGAA 238
Query: 453 CMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPIS 512
L E++ +DGSP + LW P L V ++ + R AA S
Sbjct: 239 ASRLIGAPCAEVL-DDGSPHGPRTVALWEP-PLLTDVTGENGAPV---RRAAG------S 287
Query: 513 EVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDR 572
E + + A++V G R + F RSR+ EL + IL E LVD I YRAGY+AEDR
Sbjct: 288 ESARIMADLVVEGARTLTFVRSRRGAELTAMGAKRILAEVDSDLVDRIAAYRAGYLAEDR 347
Query: 573 RRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSL 632
R +E G L G A TNALELG+D+ +D + GFPG++AS WQQAGR+GRR SL
Sbjct: 348 RELEAGLADGTLLGAATTNALELGVDIAGLDAVVVAGFPGTVASFWQQAGRAGRRGEGSL 407
Query: 633 AVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKY 692
V VA + PLD Y + +P L P+E D N VL L+CAA+E PLS D +
Sbjct: 408 VVLVARDDPLDTYLVHHPAALLDKPVEATVTDPTNPYVLGPQLLCAAMELPLS---DAEV 464
Query: 693 FGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQ 752
G +T L +G + A + ++ + P + IR + ++D
Sbjct: 465 AEFGAVELLTDLAAQGLIR------RRAHGW-FVTADSNPHAFVDIRGGIGVQVAIVDAD 517
Query: 753 SNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTD 812
S +L ++ +A + GAVY+HQG T++V L+L +AL ++ T R+ TD
Sbjct: 518 SGRLLGTVDGGRAPATTHPGAVYLHQGDTFVVDTLDLEEGLALVHPETPEWTTSARETTD 577
Query: 813 IHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYS 872
I ++ T + + + + VT G+ R SG + D +EL +P +
Sbjct: 578 IAIT-------TVLERHDHGAVSTALVEVEVTHQVVGYLRRLP-SGEVLDQIELDMPAQT 629
Query: 873 YESQAV-WIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHD 931
++AV + + +++ F LHAA HA + ++P+ C+ D+ H
Sbjct: 630 LPTRAVMYTATMELLESAGIPADRFPGALHAAEHAAIGLLPLVATCDRGDIGGVSTALHA 689
Query: 932 SRYFPERILLYDRHPGGTGVSKQ 954
P + +YD HPGG G + +
Sbjct: 690 DTGLPT-VFVYDGHPGGAGFADR 711
>gi|383829985|ref|ZP_09985074.1| helicase/secretion neighborhood putative DEAH-box helicase
[Saccharomonospora xinjiangensis XJ-54]
gi|383462638|gb|EID54728.1| helicase/secretion neighborhood putative DEAH-box helicase
[Saccharomonospora xinjiangensis XJ-54]
Length = 800
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 257/743 (34%), Positives = 386/743 (51%), Gaps = 58/743 (7%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+ H+ D++AR+A + P+ + A S+G+ K +SHQ E+ A+ +NVVVAT T
Sbjct: 28 VTHIADLAAREARFGDWPEWVPSAVLDAFVSSGVEKPWSHQVEAASAAWTRRNVVVATGT 87
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGD 339
SSGKSL Y LPVL L+ D ++ALY+ PTKAL+ DQLR++ M A + YDGD
Sbjct: 88 SSGKSLAYQLPVLSTLATDSKATALYLSPTKALSGDQLRSVCDMNVA---GVRPARYDGD 144
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T Q +R W+RD+AR + +NPDMLH +LP H +++R F +
Sbjct: 145 TPQSERGWVRDHARWVFSNPDMLHRGLLPAHPRWARF-------------------FRGL 185
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
+VV+DE H Y+G FG H AL+LRRL R+ YG+DP FV ++AT+A+P E L
Sbjct: 186 SYVVVDECHGYRGVFGSHVALLLRRLRRIAR-RYGADPVFVLASATTADPAEFATRLIGD 244
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
+ + +DGSP + LW P +L++ + D A S +E + + A
Sbjct: 245 DCVA-VTDDGSPHGARTVALWEP-----PLLDELTGEND-----APVRRSAGAEAARILA 293
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDF 579
E+V G R +AF RSR+ EL + IL E AP L D + YRAGY+ E+RR +E
Sbjct: 294 ELVIEGARTLAFVRSRRGAELTALAAKRILAEVAPELADKVAAYRAGYLPEERREVEAAL 353
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFE 639
GG+L GVA TNALELG+D+ +D + G+PG++AS WQQ+GR+GR +L V+VA +
Sbjct: 354 LGGELLGVATTNALELGVDISGLDAVVLAGYPGTLASFWQQSGRAGRAGEDALVVFVARD 413
Query: 640 GPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSS 699
PLD Y +P+ L P+E +D N VL HL CAA E L+ + + G +
Sbjct: 414 DPLDTYLAHHPKALLDRPVEAAVLDPANPYVLAPHLACAAAESALTTPELDDFGGDAAKA 473
Query: 700 GITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEE 759
+ +L L PS Y P + IR +E+ V++ ++ +L
Sbjct: 474 VLDSLVADSLLRRRPS-------GWYWTARDRPHGDVDIRGSGAEQIAVVESDTSRLLGT 526
Query: 760 IEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGN 819
++ + A V+ GAVY+H+G +Y+V EL+L IA D ++ T RD DI V
Sbjct: 527 VDGASACGTVHPGAVYLHRGESYVVDELDLEQGIAFVHAEDPEWSTSARDVVDIEVLD-- 584
Query: 820 NAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVW 879
+ K+ D +T VT+ G+ R +G + D V L LP+ ++AVW
Sbjct: 585 --VSEKLVYDGVTVNLGH---VAVTSRVVGYLRRLH-TGEVLDHVPLDLPEQVLHTRAVW 638
Query: 880 IQVPQSV--------KAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHD 931
+ + + LHAA HA + ++P++ C+ D+ H
Sbjct: 639 YTIDDQLLCGQGREPGGTGVEPARVPGALHAAEHAAIGLLPLFATCDRWDIGGVSTAVH- 697
Query: 932 SRYFPERILLYDRHPGGTGVSKQ 954
+ + ++D HPGG G + +
Sbjct: 698 ADTGEATVFVHDGHPGGAGFADR 720
>gi|407978807|ref|ZP_11159634.1| ATP-dependent helicase [Bacillus sp. HYC-10]
gi|407414678|gb|EKF36313.1| ATP-dependent helicase [Bacillus sp. HYC-10]
Length = 748
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 261/767 (34%), Positives = 411/767 (53%), Gaps = 90/767 (11%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E++E L+K Q+ H +I A+ A +P+ + D K AL+ G+S+LY HQ E+
Sbjct: 8 ELIEDLKK----DEQVEHWHEIEAKPAKTSPVPERVNDRLKKALEKRGVSELYIHQKEAF 63
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
+ G++VV T T+SGK+LCYNLPVL++++ D +S +LY+FPTKALAQDQ L +
Sbjct: 64 ERVMNGEHVVTVTPTASGKTLCYNLPVLQSIAEDQTSRSLYLFPTKALAQDQKSELNEII 123
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
D I YDGDT+ R +R ++ITNPDMLH +ILP+H ++ + NL
Sbjct: 124 HEMDVPIHSETYDGDTSPAIRQRVRQAGHIVITNPDMLHSAILPHHTKWVSLFENL---- 179
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
+++VIDE H Y+G FG H A ++RRL R+C+ YGSDP F+ ++A
Sbjct: 180 ---------------KYIVIDELHTYRGVFGSHVANVIRRLKRICA-FYGSDPIFICTSA 223
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T ANP+E +L S + LI+ +G+P +K FV +NP V+N+
Sbjct: 224 TIANPKELAEQLTG-SKMHLIERNGAPSGKKNFVFYNP-----PVVNQ----------PL 267
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREIL-EETAPHLVDSICVY 563
N S + V+ L ++ ++ I F RSR E++LS+ +E++ +E P SI Y
Sbjct: 268 NIRQSAATVVNQLAKTFLKEKIQTIVFARSRVRVEVILSHIQELVKKEIGP---KSIRGY 324
Query: 564 RAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGR 623
R GY+ ++RR IE+ G + GV +TNALELG+D+G + V + G+PGS+AS WQQAGR
Sbjct: 325 RGGYLPKERRMIEKGLREGDILGVVSTNALELGVDIGQLKVCIMTGYPGSVASTWQQAGR 384
Query: 624 SGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHP 683
+GRR +L + VA PLDQY +++PE F P E I+ +N +L HL CA+ E P
Sbjct: 385 AGRRHEEALIIMVASSSPLDQYIVRHPEYFFNRPPESARINPENLIILVDHLKCASYELP 444
Query: 684 LSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIES 743
+++ FG I YL + L S + Y + P+H IS+R+
Sbjct: 445 FR---EDEQFGDMDVEEILQ-----YLHEEGVLHFSGNRY-YWSDQSFPAHGISLRSASQ 495
Query: 744 ERYEVIDMQSN----EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKA 799
E ++D QS+ ++ E++ A +++ A+Y+H+G Y V++L+ A ++
Sbjct: 496 ENVVIVD-QSDVANVRIIGEMDRFSAMTLLHDEAIYLHEGVQYQVEKLDYEHLKAYVKQV 554
Query: 800 DLKYFTKTRDYTDIHVSGGNNAYATKISK-DQLTKTTAQA-----LACTVTTTWFGFYRL 853
D++Y+T N A K+ + D+ T+ A + + T F RL
Sbjct: 555 DVEYYTD-----------ANLAVQLKVLEIDETTEKEAVSVHYGDVTVNAMPTIFKKIRL 603
Query: 854 WRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNF---SFRSGLHAASHALLHV 910
G I + ++LP+ + A W ++ ++ E+NF + L ++ L H+
Sbjct: 604 STGENI--GSGPIHLPEEEIHTSAAWFELHEA-----ERNFEEKTLEQLLLGIANVLQHI 656
Query: 911 VPIYVRCNFSDL--APECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
VP +V C+ SD+ + H + + LYDR+PGG G+SK+V
Sbjct: 657 VPAFVMCDRSDIHVISQIKAAHTGK---PTVFLYDRYPGGIGLSKEV 700
>gi|84489181|ref|YP_447413.1| helicase [Methanosphaera stadtmanae DSM 3091]
gi|84372500|gb|ABC56770.1| predicted helicase [Methanosphaera stadtmanae DSM 3091]
Length = 771
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 254/760 (33%), Positives = 396/760 (52%), Gaps = 96/760 (12%)
Query: 222 HVEDISARKAVL----VEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVAT 277
H+E+I R A V++P L LK I KLY+HQ E++ +NV++ T
Sbjct: 21 HIEEIPPRHARYTTEDVKLPQPL----SRYLKEHHI-KLYTHQYEALKHVRNNENVIITT 75
Query: 278 MTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYD 337
T+SGK+L + LPVLE L+++ +ALY++PTKALA DQL++LL + K +D I YD
Sbjct: 76 PTASGKTLSFTLPVLEDLTNNKQDTALYIYPTKALANDQLKSLLNIDKEYDLEIYPEKYD 135
Query: 338 GDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFL 397
GDT + R ++ +RL+ITNP LH+ ILP+H Q+ R N
Sbjct: 136 GDTPKSKRPEIKRKSRLVITNPYELHL-ILPWHKQWQRFFEN------------------ 176
Query: 398 FIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELA 457
I++++IDEAH Y+G FG + A ++RRL R+C + YGS+P F+ STAT ANP E +L
Sbjct: 177 -IKYIIIDEAHQYRGVFGSNMAFLIRRLKRICKY-YGSNPQFIISTATLANPVEFSEKLT 234
Query: 458 NLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYL 517
L +++ N+GSP +K F+ +NP + + K S + L
Sbjct: 235 GLK-FKIVDNNGSPSGKKYFMFFNPYAL-----------------ESKKKPSIHQDTLKL 276
Query: 518 FAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIER 577
F +++ L+ I F SRK+ E++ ++ L+ P L + I YRAGY ++R++IE
Sbjct: 277 FNTYLKNDLQTICFEISRKMAEVIALRAKDRLKSEKPELCNKITAYRAGYTVDERKKIED 336
Query: 578 DFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVA 637
D GK+ G+ TNALELGI++G +D + G+PG++ S WQQAGR+GRR + S+ +A
Sbjct: 337 DLKSGKIKGIVTTNALELGINIGSLDSVIISGYPGTLISTWQQAGRAGRRNQESIITMLA 396
Query: 638 FEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFG--- 694
FE PLDQYFMK+PE F E ID N ++L HL CAA E PL L E FG
Sbjct: 397 FENPLDQYFMKHPEVFFNKTHEHAIIDLNNQQILRGHLKCAAYEIPLKLGEIES-FGFDD 455
Query: 695 SGL---------SSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESER 745
G+ + GI K+ ++ +D E + +K P+ +++ + SE
Sbjct: 456 EGIVIDEISDLETEGIVKYKDNQWVYND---------IELLKQDKSPNFEVNLSDVRSEP 506
Query: 746 YEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFT 805
Y+V + ++ LEE+ E +AF + +E AV +H G TYLV++L++ + +K +L Y+T
Sbjct: 507 YKVFN--DHKFLEEMSEKQAFREAHENAVLIHNGETYLVRKLDIQERRVYVKKKNLNYYT 564
Query: 806 KTRDYTDIHV---SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFD 862
+ D+ + N K+S L T T+T + I
Sbjct: 565 QALKEVDVKLLKKEKEENIGDIKLSYGSLNVTEKYDRYNTITFSK------------ISS 612
Query: 863 TVELYLPKYSYESQAVWIQVPQSVKAVVEQNF--------SFRSGLHAASHALLHVVPIY 914
+ +L LP +++++ W +P ++ +E+ F L + +L V P +
Sbjct: 613 SKKLNLPPLNFKTKGFWFTIPYDIRQHLEETLVTSEKFKDVFMGCLQGVENVMLSVAPFH 672
Query: 915 VRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
V C+ DL N H+ I +YD GG G++ +
Sbjct: 673 VMCDTYDLGGVTKNMHEDT-LNATIFIYDGFEGGVGLTNK 711
>gi|381163423|ref|ZP_09872653.1| helicase/secretion neighborhood putative DEAH-box helicase
[Saccharomonospora azurea NA-128]
gi|379255328|gb|EHY89254.1| helicase/secretion neighborhood putative DEAH-box helicase
[Saccharomonospora azurea NA-128]
Length = 799
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 258/744 (34%), Positives = 382/744 (51%), Gaps = 59/744 (7%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+ H+ D+ AR A + P + D +A+ +TG+ + + HQ E+ + +G NVVVAT T
Sbjct: 27 VTHIADLPARHARATDWPGWVPDAVLAAVTATGVDRPWEHQVEAASTAWSGHNVVVATGT 86
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGD 339
SSGKSL Y LPVL L+ D ++ALY+ PTKALA DQLR++ M + YDGD
Sbjct: 87 SSGKSLAYQLPVLSRLATDGRATALYLSPTKALAGDQLRSVSDMDVQ---GVRPARYDGD 143
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T Q +R W+RD+AR + TNPDMLH ILP H +++R F +
Sbjct: 144 TPQSERGWVRDHARWVFTNPDMLHRGILPAHPRWARF-------------------FRGL 184
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
+VV+DE H Y+G FG H AL+LRRL R+ YG+DP FV ++AT+A P E L
Sbjct: 185 SYVVVDECHGYRGVFGSHVALLLRRLRRIAR-RYGADPVFVLASATTAEPAEFAGRLLGA 243
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
+ + +D SP + LW P +L + + N A S +E + + A
Sbjct: 244 DCVA-VTDDASPHGARTVALWEP-----PLLGELAGE-----NDAPVRRSAGAEAARILA 292
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDF 579
E+V G R +AF RSR+ EL + IL E AP L D + YRAGY+ E+RR +E
Sbjct: 293 ELVIEGARTLAFVRSRRGAELTALGAQRILAEVAPELADKVAAYRAGYLPEERRALESAL 352
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFE 639
G+L GVA TNALELG+D+ +D + G+PG++AS WQQ+GR+GR +L V+VA +
Sbjct: 353 LDGELLGVATTNALELGVDISGLDAVVIAGYPGTLASFWQQSGRAGRAGDDALVVFVARD 412
Query: 640 GPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSS 699
PLD Y +P+ L + P+E +D N VL HL CAA E L++ + + G S
Sbjct: 413 DPLDTYLAHHPKALLERPVEAAVLDPTNPYVLAPHLACAAAESALTVKELDDFGGHAARS 472
Query: 700 GITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEE 759
+ L L PS Y P + IR E+ V++ ++ +L
Sbjct: 473 VLDGLVADSLLRRRPS-------GWYWTSRDRPHSDVDIRGSGVEQVAVVEADTSRLLGT 525
Query: 760 IEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGN 819
++ + A V+ GAVY+H+G +Y+V EL+L IA D ++ T RD DI +
Sbjct: 526 VDGAAACGTVHPGAVYLHRGESYVVDELDLERGIAFVHAEDPEWSTSARDVVDIEI---- 581
Query: 820 NAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVW 879
+ K T VT+ G+ R SG + D V L LP+ ++AVW
Sbjct: 582 ---LDTVEKRTYGGVTVNLGYVAVTSRVVGYLRRLP-SGEVLDHVPLDLPEQVLHTRAVW 637
Query: 880 IQVPQSVKAVVEQNFSFRSG---------LHAASHALLHVVPIYVRCNFSDLAPECPNPH 930
+ + + ++ R+G LHAA HA + ++P++ C+ D+ H
Sbjct: 638 YTIAEPLLCGADEGPGTRTGVKPARVPGALHAAEHAAIGLLPLFATCDRWDIGGVSTAVH 697
Query: 931 DSRYFPERILLYDRHPGGTGVSKQ 954
+ + ++D HPGG G + +
Sbjct: 698 -ADTGEATVFVHDGHPGGAGFADR 720
>gi|384567767|ref|ZP_10014871.1| helicase/secretion neighborhood putative DEAH-box helicase
[Saccharomonospora glauca K62]
gi|384523621|gb|EIF00817.1| helicase/secretion neighborhood putative DEAH-box helicase
[Saccharomonospora glauca K62]
Length = 799
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 258/744 (34%), Positives = 380/744 (51%), Gaps = 60/744 (8%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+ HV D+ AR A + PD + + + A+K+ G+ K ++HQ E+ + AG NVVVAT T
Sbjct: 28 VTHVADLPARGARFADWPDWVPELVRDAVKACGVDKPWNHQVEAASLARAGHNVVVATGT 87
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGD 339
+SGKSL Y +PVL L+ D ++ALY+ PTKALA DQLR + M I YDGD
Sbjct: 88 ASGKSLAYQVPVLSTLATDGKATALYLSPTKALAGDQLRVVSDMDVP---DIRPARYDGD 144
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T Q +R W+RD++R + TNPDMLH +LP H +++R F +
Sbjct: 145 TPQSERAWVRDHSRWVFTNPDMLHRGVLPAHPRWARF-------------------FRGL 185
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
+VV+DE H+Y+G FG H AL+LRRL R+ H YG+DP FV ++AT+A P E L
Sbjct: 186 SYVVVDECHSYRGVFGSHVALLLRRLRRISRH-YGADPVFVLASATTAEPAEFATRLIGA 244
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
+ + +D SP + LW P L + + N A S +E + + A
Sbjct: 245 DCVA-VTDDASPHGARTVALWEP-PLLEELTGE---------NDAPVRRSAGAEAARILA 293
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDF 579
E+V G R +AF RSR+ EL + IL E AP L D + YRAGY+ E+RR +E
Sbjct: 294 ELVVEGARTLAFVRSRRGAELTALGAKRILAEVAPELADKVAAYRAGYLPEERRELESAL 353
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFE 639
G+L GVA TNALELG+D+ +D + G+PG++AS WQQ+GR+GR +L V+VA +
Sbjct: 354 LDGRLLGVATTNALELGVDISGLDAVILAGYPGTLASFWQQSGRAGRAGDDALVVFVARD 413
Query: 640 GPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSS 699
PLD Y +P L + P+E +D N VL HL CAA E L + + G +
Sbjct: 414 DPLDTYLAHHPAALLERPVEAAVLDPTNPYVLAPHLACAAAEKALVSGELDDFGGDAART 473
Query: 700 GITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEE 759
+ L L PS Y P + IR E+ V++ ++ +L
Sbjct: 474 VLDGLVADSVLRRRPS-------GWYWTAGTPPHSDVDIRGSGFEQVAVVEAETARLLGT 526
Query: 760 IEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGN 819
++ + A V+ GAVY+H+G +Y+V EL+L IA + D ++ T RD DI V
Sbjct: 527 VDGASACGTVHPGAVYLHRGESYVVDELDLDQGIAFVHREDPEWTTSARDVVDIEV---- 582
Query: 820 NAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVW 879
+ + T VT+ G+ R SG + D V L LP+ ++AVW
Sbjct: 583 ---LDTVERRVYDGVTVNLGHVAVTSRVVGYLRR-MPSGEVLDHVPLDLPEQVLHTRAVW 638
Query: 880 IQVPQSVKAVVEQNFSFRSG---------LHAASHALLHVVPIYVRCNFSDLAPECPNPH 930
+ + + R+G LHAA HA + ++P++ C+ D+ H
Sbjct: 639 YTIDAQLLCGTRREPG-RAGLEPARVPGALHAAEHAAIGLLPLFATCDRWDIGGVSTAVH 697
Query: 931 DSRYFPERILLYDRHPGGTGVSKQ 954
+ + ++D HPGG G + +
Sbjct: 698 -ADTGEATVFVHDGHPGGAGFADR 720
>gi|261419778|ref|YP_003253460.1| DEAD/DEAH box helicase [Geobacillus sp. Y412MC61]
gi|319766594|ref|YP_004132095.1| DEAD/DEAH box helicase [Geobacillus sp. Y412MC52]
gi|261376235|gb|ACX78978.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y412MC61]
gi|317111460|gb|ADU93952.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y412MC52]
Length = 758
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 261/759 (34%), Positives = 400/759 (52%), Gaps = 74/759 (9%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E +E LR+ +V+ +I ++A V PD L +ALK+ GI+ LY+HQA +
Sbjct: 8 EWIEQLRQ----DPNVVYWHEIEPKEANFVPFPDELDPRLGAALKARGIASLYTHQAAAY 63
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
A +G+N+V T T+SGK+LCYNLPVL+A++ + SS ALY+FPTKALAQDQ L +
Sbjct: 64 DAVQSGRNIVAVTPTASGKTLCYNLPVLDAIAKEPSSRALYIFPTKALAQDQKNELNEII 123
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
SI YDGDT R +R ++ITNPDMLH +ILP+H ++ + L
Sbjct: 124 AEMGVSIYSHTYDGDTAPALRQKIRQAGHIVITNPDMLHTAILPHHTKWISLFEQL---- 179
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
R+VVIDE H Y+G FG H A ++RRL R+C+ YGS P+F+ ++A
Sbjct: 180 ---------------RYVVIDELHTYRGVFGSHVANVIRRLKRICA-FYGSRPTFICTSA 223
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T ANP+E L + LI N+G+P +K FV +NP R++ + R +A
Sbjct: 224 TIANPKELAERLIG-EPVTLIDNNGAPRGRKYFVFYNPPVVERTM---------NIRQSA 273
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYR 564
KT+ ++ +++ + + I F RSR EL+LS+ + ++ E +I YR
Sbjct: 274 TKTAVELAR------QLLVNRIPTIVFARSRVRVELILSHLQAVVNERIGD--TTIRGYR 325
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
GY+ +RR IE+ G++ GV +TNALELG+D+G + + G+PG+IAS WQQAGR+
Sbjct: 326 GGYLPNERRAIEKGLRSGEIIGVVSTNALELGVDIGQLQACILTGYPGTIASTWQQAGRA 385
Query: 625 GRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
GRR+ SL V +A PLDQY + +PE F E I+ N +L H+ CAA E P
Sbjct: 386 GRRQGDSLVVMIASASPLDQYIISHPEYFFARSPEAARINPDNLLILVDHIKCAAYELPF 445
Query: 685 SLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESE 744
+ FG G+ + +L+ L+ A + ++ + P+H IS+R+ E
Sbjct: 446 R---RGETFG-----GVEVEEVLDFLAEQGVLNERAGRWHWMS-DAFPAHDISLRSAAQE 496
Query: 745 RYEVIDMQS---NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADL 801
+ID+ + V+ E++ A +++ A+Y+H+G Y V++L+ K A ++ D+
Sbjct: 497 NVVIIDISDTARHRVIGEMDRFSAMTLLHDEAIYLHEGAQYQVEKLDWEEKKAYVRQVDV 556
Query: 802 KYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIF 861
+YFT + V + + + + +A+A + GSG I
Sbjct: 557 EYFTDANLAVRLDVLSEDRSETRGQMAVRYGDVSVRAMATIFKKLKLSTFENI-GSGPI- 614
Query: 862 DTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFS---FRSGLHAASHALLHVVPIYVRCN 918
LP+ + + A WI+ V FS F L ++ L H+VP++V C+
Sbjct: 615 -----RLPEETLHTSAAWIE-----WEAVPSRFSPALFEQLLVGIANVLGHLVPVFVMCD 664
Query: 919 FSDL--APECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
SDL P+ PH R I LYDR+PGG G+S+ V
Sbjct: 665 RSDLHVVPQLKAPHSGR---PTIFLYDRYPGGVGLSEAV 700
>gi|448237779|ref|YP_007401837.1| DEAD box ATP-dependent helicase [Geobacillus sp. GHH01]
gi|445206621|gb|AGE22086.1| DEAD box ATP-dependent helicase [Geobacillus sp. GHH01]
Length = 758
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 261/759 (34%), Positives = 400/759 (52%), Gaps = 74/759 (9%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E +E LR+ +V+ +I ++A V PD L +ALK+ GI+ LY+HQA +
Sbjct: 8 EWIEQLRQ----DPNVVYWHEIEPKEANFVPFPDELDPRLGAALKARGIASLYTHQAAAY 63
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
A +G+N+V T T+SGK+LCYNLPVL+A++ + SS ALY+FPTKALAQDQ L +
Sbjct: 64 DAVQSGRNIVAVTPTASGKTLCYNLPVLDAIAKEPSSRALYIFPTKALAQDQRNELNEII 123
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
SI YDGDT R +R ++ITNPDMLH +ILP+H ++ + L
Sbjct: 124 AEMGVSIYSHTYDGDTAPALRQKIRQAGHIVITNPDMLHTAILPHHTKWISLFEQL---- 179
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
R+VVIDE H Y+G FG H A ++RRL R+C+ YGS P+F+ ++A
Sbjct: 180 ---------------RYVVIDELHTYRGVFGSHVANVIRRLKRICA-FYGSRPTFICTSA 223
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T ANP+E L + LI N+G+P +K FV +NP R++ + R +A
Sbjct: 224 TIANPKELAERLIG-EPVTLIDNNGAPRGRKYFVFYNPPVVERTM---------NIRQSA 273
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYR 564
KT+ ++ +++ + + I F RSR EL+LS+ + ++ E +I YR
Sbjct: 274 TKTAVELAR------QLLVNRIPTIVFARSRVRVELILSHLQAVVNERIGD--TTIRGYR 325
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
GY+ +RR IE+ G++ GV +TNALELG+D+G + + G+PG+IAS WQQAGR+
Sbjct: 326 GGYLPNERRAIEKGLRSGEIIGVVSTNALELGVDIGQLQACILTGYPGTIASTWQQAGRA 385
Query: 625 GRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
GRR+ SL V +A PLDQY + +PE F E I+ N +L H+ CAA E P
Sbjct: 386 GRRQGDSLVVMIASASPLDQYIISHPEYFFARSPEAARINPDNLLILVDHIKCAAYELPF 445
Query: 685 SLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESE 744
+ FG G+ + +L+ L+ A + ++ + P+H IS+R+ E
Sbjct: 446 R---RGETFG-----GVEVEEVLDFLAEQGVLNERAGRWHWMS-DAFPAHDISLRSAAQE 496
Query: 745 RYEVIDMQS---NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADL 801
+ID+ + V+ E++ A +++ A+Y+H+G Y V++L+ K A ++ D+
Sbjct: 497 NVVIIDISDTARHRVIGEMDRFSAMTLLHDEAIYLHEGAQYQVEKLDWEEKKAYVRQVDV 556
Query: 802 KYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIF 861
+YFT + V + + + + +A+A + GSG I
Sbjct: 557 EYFTDANLAVRLDVLSEDRSETRGQMAVRYGDVSVRAMATIFKKLKLSTFENI-GSGPI- 614
Query: 862 DTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFS---FRSGLHAASHALLHVVPIYVRCN 918
LP+ + + A WI+ V FS F L ++ L H+VP++V C+
Sbjct: 615 -----RLPEETLHTSAAWIE-----WEAVPSRFSPALFEQLLVGIANVLGHLVPVFVMCD 664
Query: 919 FSDL--APECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
SDL P+ PH R I LYDR+PGG G+S+ V
Sbjct: 665 RSDLHVVPQLKAPHSGR---PTIFLYDRYPGGVGLSEAV 700
>gi|169627590|ref|YP_001701239.1| DEAD-box ATP dependent DNA helicase [Mycobacterium abscessus ATCC
19977]
gi|420914347|ref|ZP_15377654.1| putative helicase [Mycobacterium abscessus 6G-0125-S]
gi|421034678|ref|ZP_15497699.1| putative helicase [Mycobacterium abscessus 3A-0930-S]
gi|169239557|emb|CAM60585.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Mycobacterium
abscessus]
gi|392125347|gb|EIU51103.1| putative helicase [Mycobacterium abscessus 6G-0125-S]
gi|392227999|gb|EIV53512.1| putative helicase [Mycobacterium abscessus 3A-0930-S]
Length = 769
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 257/743 (34%), Positives = 374/743 (50%), Gaps = 68/743 (9%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
H+ DI AR A + P + +A + G++ +SHQ + + AG++VVVAT T+S
Sbjct: 26 HICDIPARNAEVTSWPQWAHPDAIAAFAAQGVTAPWSHQVAAATLAFAGRHVVVATGTAS 85
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFD--ASIDIGVYDGD 339
GKS+ Y LP+L AL+ + + ALY+ PTKAL DQLRA+ + D + YDGD
Sbjct: 86 GKSVAYQLPILTALASEPRARALYLAPTKALGHDQLRAVRELITGVDNFERVQPCTYDGD 145
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
++ + R + R+++R + TNPDM+H+S+L H ++S L LR
Sbjct: 146 SSNELRRFARESSRWIFTNPDMIHVSLLHNHTRWSAFLRGLR------------------ 187
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
++V+DE H Y+G FG + ALIL+RL RLC YGS P+ VF++AT+ANP L
Sbjct: 188 -YLVVDECHYYRGVFGSNVALILQRLLRLCER-YGSHPTVVFASATTANPGAAAQALIGQ 245
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPIS-EVSYLF 518
E++ DGSP + LW P + T P+S E S L
Sbjct: 246 PVEEVVA-DGSPHGMRTVALWEPPL------------LPITGENGAPVRRPVSTETSRLL 292
Query: 519 AEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERD 578
A++VQ G R +AF RSR+ E+ L E P LV + YRAGY+ EDRR +E+
Sbjct: 293 ADLVQEGARTLAFVRSRRGAEMTALGAAHRLSEVDPGLVSQVAAYRAGYLPEDRRALEQA 352
Query: 579 FFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAF 638
G L G A TNALELG+D+ +D + GFPG++AS WQQAGRSGRR + SL V VA
Sbjct: 353 LSSGTLTGAATTNALELGVDIAGLDAVVVAGFPGTVASFWQQAGRSGRRGQGSLVVLVAR 412
Query: 639 EGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSG-- 696
+ PLD Y + +PE L PIE ID N VL HL+CAA E PL+ D + +G
Sbjct: 413 DDPLDTYLVHHPEALLDKPIEAVVIDPTNPHVLRPHLLCAATELPLTE-DDVRSLDAGQV 471
Query: 697 ----LSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQ 752
+ G+ + GY ++ P L+ P + IR + +++
Sbjct: 472 VSDLVDDGLLRKRPGGYFAA-PGLN--------------PYAAVDIRGSIGGQVMILEAD 516
Query: 753 SNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTD 812
+ VL ++ +A V+ GAVY+H G TY+V L+ IAL Y T R D
Sbjct: 517 TGRVLGTVDTGRAPATVHPGAVYLHSGETYVVDSLDFGDGIALVHNDRPDYSTFARSTID 576
Query: 813 IHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYS 872
I ++G + + L + VT G+ R +G I D VEL +P +
Sbjct: 577 IAITG-------EGERIDLGDIQIGLVPVDVTHQVIGYLRTLT-TGEILDFVELDMPSST 628
Query: 873 YESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHD 931
++AV V P+++ + S LHAA HA + ++P+ C+ D+
Sbjct: 629 LSTKAVMYTVTPEALAGIDIDPLSTPGALHAAEHAAIGLLPLVASCDRGDIGGVSTALQP 688
Query: 932 SRYFPERILLYDRHPGGTGVSKQ 954
P + +YD HPGG G + +
Sbjct: 689 ETGLPT-VFVYDGHPGGAGFAAR 710
>gi|357009727|ref|ZP_09074726.1| YprA [Paenibacillus elgii B69]
Length = 761
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 252/764 (32%), Positives = 399/764 (52%), Gaps = 75/764 (9%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
EM++ +R Q+ + I R+ P+ L + AL + GI +LY+HQA+S
Sbjct: 13 EMIDLIRSSSELMSQVTYWHTIPPREGRYESFPEGLHAGLREALLTRGIGQLYTHQAQSF 72
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
AG++VV T T+SGK+LCYNLPVLE + D S+ ALY+FPTKALAQDQ+ L +
Sbjct: 73 REVSAGRHVVTVTPTASGKTLCYNLPVLEGILKDESARALYLFPTKALAQDQVAELQELA 132
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
A I YDGDT R +R+ +++TNPDMLH +ILP+H ++ ++ N
Sbjct: 133 NIMGADIKTHTYDGDTPPTVRQAIRNAGHIVVTNPDMLHSAILPHHTKWVKLFEN----- 187
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
I+F+VIDE H+Y+G FG H A ++RRL R+C YGS+P F+ ++A
Sbjct: 188 --------------IKFIVIDEVHSYRGVFGSHVANVIRRLKRIC-RFYGSNPQFICASA 232
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T NPREH L ++ L+ ++G+P +K FV +NP + L ++ + +TR A
Sbjct: 233 TIDNPREHTERLIG-ESVSLVNDNGAPAGEKHFVFYNP-PVVNQQLGIRKSSVLETRKIA 290
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYR 564
A +++ G++ I F RSR E++L+Y +E++ SI YR
Sbjct: 291 --------------AMLLRQGIQTIVFARSRVRVEILLTYLQELVAHELG--TKSIRGYR 334
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
GY+ + RR IER G++ GV +TNALELGID+G + + G+PG+IAS WQQ+GR+
Sbjct: 335 GGYLPKLRREIERGLRSGEIRGVVSTNALELGIDIGQLQACVLNGYPGTIASTWQQSGRA 394
Query: 625 GRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
GRR+ S+ VA PLDQY ++ P F+ P E I+ N +L H+ CAA E P
Sbjct: 395 GRRQESSVTFLVASSNPLDQYMIQNPRFFFERPPERALIEPDNLIILVDHVKCAAYELPF 454
Query: 685 SLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESE 744
+E++ G L + +L+ + L + ++ + P+H IS+R+ E
Sbjct: 455 E--ENEQFGGESLHDILE------FLTDERILHRVKNRWHWM-EQSFPAHDISLRSAAQE 505
Query: 745 RYEVIDMQSN-EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKY 803
+ +IDM + V+ E++ A ++E A+Y+H+G Y V++L+ K A ++ D+ Y
Sbjct: 506 NFIIIDMTNGARVIGEVDRFSAPTMIHEEAIYIHEGVQYQVEKLDYEEKKAYIREVDVDY 565
Query: 804 FTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDT 863
FT + V + + K Q + T A A T F +L I +
Sbjct: 566 FTDASLAVQLKVLHVHREAIDRGLKRQFGEVTVNAKA-----TIFKKIKLRTHENI--GS 618
Query: 864 VELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLA 923
++LP+ + + W + A + N + L ++ L+H+ P+Y+ C
Sbjct: 619 GPIHLPEEELHTSSYWFTFDDEIAAGMTVN-DMQFALLGLANVLVHIAPLYLMC------ 671
Query: 924 PECPNPHDSRYFPE---------RILLYDRHPGGTGVSKQVTDM 958
+PHD R P+ I YDR+PGG G+S+++ ++
Sbjct: 672 ----DPHDIRVVPQVKAVHNKQPTIFFYDRYPGGVGLSERLYEV 711
>gi|398366425|ref|NP_010577.3| Hrq1p [Saccharomyces cerevisiae S288c]
gi|74676365|sp|Q05549.1|HRQ1_YEAST RecName: Full=Putative ATP-dependent helicase HRQ1; AltName:
Full=Homologous to recQ protein 1
gi|1230655|gb|AAB64466.1| Ydr291wp [Saccharomyces cerevisiae]
gi|151942263|gb|EDN60619.1| DNA helicase [Saccharomyces cerevisiae YJM789]
gi|190404766|gb|EDV08033.1| DNA helicase [Saccharomyces cerevisiae RM11-1a]
gi|256271795|gb|EEU06826.1| YDR291W-like protein [Saccharomyces cerevisiae JAY291]
gi|259145528|emb|CAY78792.1| EC1118_1D0_5732p [Saccharomyces cerevisiae EC1118]
gi|285811306|tpg|DAA12130.1| TPA: Hrq1p [Saccharomyces cerevisiae S288c]
gi|392300404|gb|EIW11495.1| Hrq1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 1077
Score = 418 bits (1074), Expect = e-113, Method: Compositional matrix adjust.
Identities = 257/772 (33%), Positives = 403/772 (52%), Gaps = 86/772 (11%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
+M+E L+ Q+ H I +R A + L ++ YSHQA++I
Sbjct: 243 QMIEKLKSTEFYASQIKHCFTIPSRTAKYKGLCFELAPEVYQGMEH---ENFYSHQADAI 299
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRA----L 320
+ G+NV++ T TSSGKSL Y L ++ L D S+ +Y+FPTKALAQDQ RA L
Sbjct: 300 NSLHQGENVIITTSTSSGKSLIYQLAAIDLLLKDPESTFMYIFPTKALAQDQKRAFKVIL 359
Query: 321 LAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNL 380
+ + +A +D YDGDT ++R ++R NAR++ TNPDM+H SILP H + L +L
Sbjct: 360 SKIPELKNAVVD--TYDGDTEPEERAYIRKNARVIFTNPDMIHTSILPNHANWRHFLYHL 417
Query: 381 RLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVY-GSDPSF 439
+L VV+DE H YKG FG H AL++RRL RLC Y S F
Sbjct: 418 KL-------------------VVVDELHIYKGLFGSHVALVMRRLLRLCHCFYENSGLQF 458
Query: 440 VFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDD 499
+ +AT +P +H ++ ++ + LI DGSP K V+WNP +L + +
Sbjct: 459 ISCSATLKSPVQHMKDMFGINEVTLIHEDGSPTGAKHLVVWNP-----PILPQHE----- 508
Query: 500 TRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETA-PHLVD 558
K + I E + + +++ + +R IAFC R++CEL++ R I ET LV
Sbjct: 509 -----RKRENFIRESAKILVQLILNNVRTIAFCYVRRVCELLMKEVRNIFIETGREDLVT 563
Query: 559 SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLW 618
+ YR GY A DRR+IER+ F G L V +TNALELGID+G +D L GFP S+A+
Sbjct: 564 EVMSYRGGYSASDRRKIEREMFHGNLKAVISTNALELGIDIGGLDAVLMCGFPLSMANFH 623
Query: 619 QQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFK----SPIECCHIDAQNHKVLEQH 674
QQ+GR+GRR SL + VA + P+DQ+++ +PE L + + +D N +LE H
Sbjct: 624 QQSGRAGRRNNDSLTLVVASDSPVDQHYVAHPESLLEVNNFESYQDLVLDFNNILILEGH 683
Query: 675 LVCAALEHPLSLIYDEKYFGSGLSSGITTLK----NRGYLSSDPSLDSSAKIFEYIGHEK 730
+ CAA E P++ D++YF I + GY +S+ L
Sbjct: 684 IQCAAFELPINFERDKQYFTESHLRKICVERLHHNQDGYHASNRFL-------------P 730
Query: 731 MPSHTISIRAIESERYEVIDMQS--NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELN 788
PS +S+R E +++ V+D+ + N ++EEIE S+ F +Y+G +++HQG+ YLVKE N
Sbjct: 731 WPSKCVSLRGGEEDQFAVVDITNGRNIIIEEIEASRTSFTLYDGGIFIHQGYPYLVKEFN 790
Query: 789 LSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTW- 847
+ A Q+ D+ + T RD+TD+ + ++ + L + + TT
Sbjct: 791 PDERYAKVQRVDVDWVTNQRDFTDV------DPQEIELIR-SLRNSDVPVYFGKIKTTII 843
Query: 848 -FGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQ-SVKAVVEQNFSFRSGLHAASH 905
FGF+++ + II D +E + P S+ +WI +P+ +++ ++ + +H A H
Sbjct: 844 VFGFFKVDKYKRII-DAIETHNPPVIINSKGLWIDMPKYALEICQKKQLNVAGAIHGAQH 902
Query: 906 ALLHVVPIYVRCNFSDLAPECPNP-------HDSRYFPERILLYDRHPGGTG 950
A++ ++P ++ ++ EC P R P R++ YD G G
Sbjct: 903 AIMGMLPRFIVAGVDEIQTECKAPEKEFAERQTKRKRPARLIFYDSKGGKYG 954
>gi|358389118|gb|EHK26711.1| hypothetical protein TRIVIDRAFT_50142 [Trichoderma virens Gv29-8]
Length = 1619
Score = 417 bits (1073), Expect = e-113, Method: Compositional matrix adjust.
Identities = 254/728 (34%), Positives = 388/728 (53%), Gaps = 78/728 (10%)
Query: 253 ISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKAL 312
I++ Y+HQAE+I G+N+V++T TSSGKSL Y LP+L AL D +S ALY+FPTKAL
Sbjct: 861 ITQFYTHQAEAINKLHEGQNIVISTSTSSGKSLIYQLPILHALERDTNSRALYIFPTKAL 920
Query: 313 AQDQLRAL---LAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPY 369
AQDQ R+L LA + + + + +DGDT R +R+ A+++ TNPDMLH++ILP
Sbjct: 921 AQDQKRSLKDILAYMPSLNQVL-VETFDGDTPMNLRDAIREEAKIIFTNPDMLHLTILPQ 979
Query: 370 HGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLC 429
++ L NL+ FVV+DE H Y G G H A I+RRL R+C
Sbjct: 980 EQRWRTFLKNLK-------------------FVVVDELHYYNGQLGSHVAFIMRRLRRIC 1020
Query: 430 SHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSV 489
+ V F+ +AT ANP EH + +S + LI DGSP +K F+ WN
Sbjct: 1021 AAVGNRRIQFISCSATVANPEEHFKLIFGVSNVCLIDYDGSPSGRKEFLCWN-------- 1072
Query: 490 LNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREIL 549
T + + + + E + LF ++ G+R IAFCR R CE + + ++ L
Sbjct: 1073 -----TPFKEPGDPTSGRGNAKFECARLFCALLLRGVRIIAFCRVRAQCEALTNAIKQEL 1127
Query: 550 EETA-PHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHL 608
E P + + YR GY A DRRRIE + F GKL G+ AT ALELGID+G +D L
Sbjct: 1128 RELGRPECSNLVMGYRGGYTARDRRRIEAEMFEGKLLGIVATTALELGIDIGTLDCVLTW 1187
Query: 609 GFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNH 668
GFP +IA+L QQ+GR+GRR + SL++ V P DQ++M P++LF P +D +
Sbjct: 1188 GFPYTIANLRQQSGRAGRRTKDSLSILVGDSFPTDQHYMNNPDELFSKPNCELRVDLDDI 1247
Query: 669 KVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIG- 727
V E H+ CAA E P+ D ++FG L P + + + +G
Sbjct: 1248 LVREGHIQCAAYEMPIRQDEDMQFFGPDL----------------PQICQERLVKDELGF 1291
Query: 728 ---HEKM---PSHTISIRAIESERYEVIDMQS--NEVLEEIEESKAFFQVYEGAVYMHQG 779
H++ P+ I+IR E E + +ID+ + NEVLEE+E S+A F +Y+GA+++HQG
Sbjct: 1292 FHCHDRFRPNPAQYIAIRDAEDEHFAIIDITNGRNEVLEELEASRATFTIYDGAIFLHQG 1351
Query: 780 HTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQAL 839
+TYL+++ IA ++ ++++ T +RD+TDI + I + A
Sbjct: 1352 NTYLIRDFLPDQSIAKVERVNVEWTTMSRDFTDI-----DPVEIEAIRTIPGSSCHAYYG 1406
Query: 840 ACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVV-EQNFSFRS 898
+ FGF+++ + G I D V++ P S+ +W+ +P+ V ++ ++ + +
Sbjct: 1407 GIKIQQNVFGFFKVDK-RGRIIDAVQVDNPPVIRHSKGMWLDIPRQVLELLRDRQLNAAA 1465
Query: 899 GLHAASHALLHVVPIYVRCNFSDLAPEC-------PNPHDSRYFPERILLYDRHPG--GT 949
+HAA H ++ ++P +V D+ EC R P R+ YD G G+
Sbjct: 1466 AIHAAEHVIMSLLPAFVISLPGDVRTECKVALKEFAKKETKRKRPARLTFYDAKGGANGS 1525
Query: 950 GVSKQVTD 957
GVS + D
Sbjct: 1526 GVSTKAFD 1533
>gi|420913145|ref|ZP_15376457.1| putative helicase [Mycobacterium abscessus 6G-0125-R]
gi|420919464|ref|ZP_15382763.1| putative helicase [Mycobacterium abscessus 6G-0728-S]
gi|420925232|ref|ZP_15388521.1| putative helicase [Mycobacterium abscessus 6G-1108]
gi|420964714|ref|ZP_15427932.1| putative helicase [Mycobacterium abscessus 3A-0810-R]
gi|420975580|ref|ZP_15438766.1| putative helicase [Mycobacterium abscessus 6G-0212]
gi|420980959|ref|ZP_15444132.1| putative helicase [Mycobacterium abscessus 6G-0728-R]
gi|421005250|ref|ZP_15468369.1| putative helicase [Mycobacterium abscessus 3A-0119-R]
gi|421010945|ref|ZP_15474045.1| putative helicase [Mycobacterium abscessus 3A-0122-R]
gi|421016049|ref|ZP_15479120.1| putative helicase [Mycobacterium abscessus 3A-0122-S]
gi|421022388|ref|ZP_15485436.1| putative helicase [Mycobacterium abscessus 3A-0731]
gi|421027312|ref|ZP_15490351.1| putative helicase [Mycobacterium abscessus 3A-0930-R]
gi|392115139|gb|EIU40908.1| putative helicase [Mycobacterium abscessus 6G-0125-R]
gi|392135307|gb|EIU61047.1| putative helicase [Mycobacterium abscessus 6G-0728-S]
gi|392140889|gb|EIU66615.1| putative helicase [Mycobacterium abscessus 6G-1108]
gi|392173525|gb|EIU99192.1| putative helicase [Mycobacterium abscessus 6G-0212]
gi|392176757|gb|EIV02415.1| putative helicase [Mycobacterium abscessus 6G-0728-R]
gi|392204745|gb|EIV30330.1| putative helicase [Mycobacterium abscessus 3A-0119-R]
gi|392213737|gb|EIV39292.1| putative helicase [Mycobacterium abscessus 3A-0122-R]
gi|392215085|gb|EIV40633.1| putative helicase [Mycobacterium abscessus 3A-0731]
gi|392217498|gb|EIV43033.1| putative helicase [Mycobacterium abscessus 3A-0122-S]
gi|392233272|gb|EIV58771.1| putative helicase [Mycobacterium abscessus 3A-0930-R]
gi|392258663|gb|EIV84108.1| putative helicase [Mycobacterium abscessus 3A-0810-R]
Length = 777
Score = 417 bits (1073), Expect = e-113, Method: Compositional matrix adjust.
Identities = 257/743 (34%), Positives = 374/743 (50%), Gaps = 68/743 (9%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
H+ DI AR A + P + +A + G++ +SHQ + + AG++VVVAT T+S
Sbjct: 34 HICDIPARNAEVTSWPQWAHPDAIAAFAAQGVTAPWSHQVAAATLAFAGRHVVVATGTAS 93
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFD--ASIDIGVYDGD 339
GKS+ Y LP+L AL+ + + ALY+ PTKAL DQLRA+ + D + YDGD
Sbjct: 94 GKSVAYQLPILTALASEPRARALYLAPTKALGHDQLRAVRELITGVDNFERVQPCTYDGD 153
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
++ + R + R+++R + TNPDM+H+S+L H ++S L LR
Sbjct: 154 SSNELRRFARESSRWIFTNPDMIHVSLLHNHTRWSAFLRGLR------------------ 195
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
++V+DE H Y+G FG + ALIL+RL RLC YGS P+ VF++AT+ANP L
Sbjct: 196 -YLVVDECHYYRGVFGSNVALILQRLLRLCER-YGSHPTVVFASATTANPGAAAQALIGQ 253
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPIS-EVSYLF 518
E++ DGSP + LW P + T P+S E S L
Sbjct: 254 PVEEVVA-DGSPHGMRTVALWEPPL------------LPITGENGAPVRRPVSTETSRLL 300
Query: 519 AEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERD 578
A++VQ G R +AF RSR+ E+ L E P LV + YRAGY+ EDRR +E+
Sbjct: 301 ADLVQEGARTLAFVRSRRGAEMTALGAAHRLSEVDPGLVSQVAAYRAGYLPEDRRALEQA 360
Query: 579 FFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAF 638
G L G A TNALELG+D+ +D + GFPG++AS WQQAGRSGRR + SL V VA
Sbjct: 361 LSSGTLTGAATTNALELGVDIAGLDAVVVAGFPGTVASFWQQAGRSGRRGQGSLVVLVAR 420
Query: 639 EGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSG-- 696
+ PLD Y + +PE L PIE ID N VL HL+CAA E PL+ D + +G
Sbjct: 421 DDPLDTYLVHHPEALLDKPIEAVVIDPTNPHVLRPHLLCAATELPLTE-DDVRSLDAGQV 479
Query: 697 ----LSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQ 752
+ G+ + GY ++ P L+ P + IR + +++
Sbjct: 480 VSDLVDDGLLRKRPGGYFAA-PGLN--------------PYAAVDIRGSIGGQVMILEAD 524
Query: 753 SNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTD 812
+ VL ++ +A V+ GAVY+H G TY+V L+ IAL Y T R D
Sbjct: 525 TGRVLGTVDTGRAPATVHPGAVYLHSGETYVVDSLDFGDGIALVHNDRPDYSTFARSTID 584
Query: 813 IHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYS 872
I ++G + + L + VT G+ R +G I D VEL +P +
Sbjct: 585 IAITG-------EGERIDLGDIQIGLVPVDVTHQVIGYLRTLT-TGEILDFVELDMPSST 636
Query: 873 YESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHD 931
++AV V P+++ + S LHAA HA + ++P+ C+ D+
Sbjct: 637 LSTKAVMYTVTPEALAGIDIDPLSTPGALHAAEHAAIGLLPLVASCDRGDIGGVSTALQP 696
Query: 932 SRYFPERILLYDRHPGGTGVSKQ 954
P + +YD HPGG G + +
Sbjct: 697 ETGLPT-VFVYDGHPGGAGFAAR 718
>gi|426200326|gb|EKV50250.1| hypothetical protein AGABI2DRAFT_199813 [Agaricus bisporus var.
bisporus H97]
Length = 840
Score = 417 bits (1072), Expect = e-113, Method: Compositional matrix adjust.
Identities = 256/726 (35%), Positives = 393/726 (54%), Gaps = 75/726 (10%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSAL-KSTGISKLYSHQAESIMASLAGKNVVVAT 277
Q++ + + AR+ + E+ +L + SAL S I Y+HQ+E+I A GK+VVV+T
Sbjct: 82 QIIFRKTVDAREPLHGELGSSLSPSITSALATSRSIGSFYAHQSEAIRALFEGKHVVVST 141
Query: 278 MTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDA--SIDIGV 335
T+SGKSL Y +P+L+ L D+ + A+ ++PTKAL QDQ +L M + I +
Sbjct: 142 STASGKSLIYQVPILKFLEDDIEAKAICIYPTKALEQDQKASLEKMIQNCPGLEHIRVST 201
Query: 336 YDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLI 395
YDGDT Q+ R +R+ + ++ TN D +H SILP+ + L ++L
Sbjct: 202 YDGDTPQELRPTIREESSVIFTNFDTIHASILPHEDNWRSFLRQVKL------------- 248
Query: 396 FLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCME 455
VV+DE H Y G G H A I+RR R+C+ V F+ TAT NP H +
Sbjct: 249 ------VVVDELHYYSGLLGSHVAFIMRRFRRICAAVGNRQIRFISCTATLGNPGAHMQK 302
Query: 456 LANLST--LELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISE 513
+ L ++++ DG+P +K F++WNP + D N ISE
Sbjct: 303 IFCLGEDEIQVVDTDGAPSGRKDFLVWNPP-------------LIDNANKNLGRRGSISE 349
Query: 514 VSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTR-EILEETAPHLVDSICVYRAGYVAEDR 572
+ L ++Q G R + FC+ RK+CEL + R ++ E +++ + YR GY EDR
Sbjct: 350 ATLLMRFLMQQGARVLLFCKIRKVCELAMRAIRADLSNEGQLNILAKVKAYRGGYSQEDR 409
Query: 573 RRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSL 632
RRIE + F G+L G+ ATNALELGID+G +D+ + LGFP S+AS QQAGR+GRR R SL
Sbjct: 410 RRIEEEAFSGQLLGIIATNALELGIDIGALDIVIMLGFPMSVASFRQQAGRAGRRVRDSL 469
Query: 633 AVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKY 692
A++VA P+DQY++ + E+LF +E ID ++ +LE HL CAA E P+ D++Y
Sbjct: 470 AIFVADPFPIDQYYVNHSEELFSHAMEDLVIDTESPVILEAHLQCAAHEMPIHR-EDKQY 528
Query: 693 FGSGLSSGITT--LKNR-GYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVI 749
FG+ + LK+R G+ + P+ Y P +SIR + ERY VI
Sbjct: 529 FGALMLDICEKKLLKDRDGWYQTHPNF------LPY------PPRFVSIRGAQEERYAVI 576
Query: 750 DMQS---NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTK 806
+++ N +LEE+E S+A F++YEG ++MHQG Y+V E++ +KIA +A++ Y T
Sbjct: 577 CVKTDAANIILEEVEVSRAMFEIYEGGIFMHQGEAYIVTEVSHDNKIAKVIQANVNYHTS 636
Query: 807 TRDY-----TDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIF 861
R+ T I G + A+ S+ T L ++ GF+++ + I
Sbjct: 637 PRNVDAVRTTRIRAIGNHRAFYGSESQTYFRATVKITL-----ISFSGFFKIRNNT--IL 689
Query: 862 DTVELYLPKYSYESQAVWIQVPQSVKAVV-EQNFSFRSGLHAASHALLHVVPIYVRCNFS 920
D VE+ P Y ++ WI VP+S+ ++ ++F+ +HAA HA L+ P+
Sbjct: 690 DAVEIDTPPYVCDTTGFWIDVPRSILELLRRKHFNLAEAIHAAQHAFLNQFPLS-----E 744
Query: 921 DLAPEC 926
DL EC
Sbjct: 745 DLRTEC 750
>gi|323334141|gb|EGA75525.1| YDR291W-like protein [Saccharomyces cerevisiae AWRI796]
Length = 1057
Score = 417 bits (1072), Expect = e-113, Method: Compositional matrix adjust.
Identities = 257/772 (33%), Positives = 403/772 (52%), Gaps = 86/772 (11%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
+M+E L+ Q+ H I +R A + L ++ YSHQA++I
Sbjct: 223 QMIEKLKSTEFYASQIKHCFTIPSRTAKYKGLCFELAPEVYQGMEH---ENFYSHQADAI 279
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRA----L 320
+ G+NV++ T TSSGKSL Y L ++ L D S+ +Y+FPTKALAQDQ RA L
Sbjct: 280 NSLHQGENVIITTSTSSGKSLIYQLAAIDLLLKDPESTFMYIFPTKALAQDQKRAFKVIL 339
Query: 321 LAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNL 380
+ + +A +D YDGDT ++R ++R NAR++ TNPDM+H SILP H + L +L
Sbjct: 340 SKIPELKNAVVD--TYDGDTEPEERAYIRKNARVIFTNPDMIHTSILPNHANWRHFLYHL 397
Query: 381 RLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVY-GSDPSF 439
+L VV+DE H YKG FG H AL++RRL RLC Y S F
Sbjct: 398 KL-------------------VVVDELHIYKGLFGSHVALVMRRLLRLCHCFYENSGLQF 438
Query: 440 VFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDD 499
+ +AT +P +H ++ ++ + LI DGSP K V+WNP +L + +
Sbjct: 439 ISCSATLKSPVQHMKDMFGINEVTLIHEDGSPTGAKHLVVWNP-----PILPQHE----- 488
Query: 500 TRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETA-PHLVD 558
K + I E + + +++ + +R IAFC R++CEL++ R I ET LV
Sbjct: 489 -----RKRENFIRESAKILVQLILNNVRTIAFCYVRRVCELLMKEVRNIFIETGREDLVT 543
Query: 559 SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLW 618
+ YR GY A DRR+IER+ F G L V +TNALELGID+G +D L GFP S+A+
Sbjct: 544 EVMSYRGGYSASDRRKIEREMFHGNLKAVISTNALELGIDIGGLDAVLMCGFPLSMANFH 603
Query: 619 QQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFK----SPIECCHIDAQNHKVLEQH 674
QQ+GR+GRR SL + VA + P+DQ+++ +PE L + + +D N +LE H
Sbjct: 604 QQSGRAGRRNNDSLTLVVASDSPVDQHYVAHPESLLEVNNFESYQDLVLDFNNILILEGH 663
Query: 675 LVCAALEHPLSLIYDEKYFGSGLSSGITTLK----NRGYLSSDPSLDSSAKIFEYIGHEK 730
+ CAA E P++ D++YF I + GY +S+ L
Sbjct: 664 IQCAAFELPINFERDKQYFTESHLRKICVERLHHNQDGYHASNRFL-------------P 710
Query: 731 MPSHTISIRAIESERYEVIDMQS--NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELN 788
PS +S+R E +++ V+D+ + N ++EEIE S+ F +Y+G +++HQG+ YLVKE N
Sbjct: 711 WPSKCVSLRGGEEDQFAVVDITNGRNIIIEEIEASRTSFTLYDGGIFIHQGYPYLVKEFN 770
Query: 789 LSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTW- 847
+ A Q+ D+ + T RD+TD+ + ++ + L + + TT
Sbjct: 771 PDERYAKVQRVDVDWVTNQRDFTDV------DPQEIELIR-SLRNSDVPVYFGKIKTTII 823
Query: 848 -FGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQ-SVKAVVEQNFSFRSGLHAASH 905
FGF+++ + II D +E + P S+ +WI +P+ +++ ++ + +H A H
Sbjct: 824 VFGFFKVDKYKRII-DAIETHNPPVIINSKGLWIDMPKYALEICQKKQLNVAGAIHGAQH 882
Query: 906 ALLHVVPIYVRCNFSDLAPECPNP-------HDSRYFPERILLYDRHPGGTG 950
A++ ++P ++ ++ EC P R P R++ YD G G
Sbjct: 883 AIMGMLPRFIVAGVDEIQTECKAPEKEFAERQTKRKRPARLIFYDSKGGKYG 934
>gi|393245742|gb|EJD53252.1| DEAD/H helicase [Auricularia delicata TFB-10046 SS5]
Length = 1053
Score = 417 bits (1072), Expect = e-113, Method: Compositional matrix adjust.
Identities = 272/765 (35%), Positives = 417/765 (54%), Gaps = 89/765 (11%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKST-GISKLYSHQAES 263
E+++ L++ Q+V R+A L E+ +L +ALKS+ IS L+SHQ +
Sbjct: 248 EILDDLKQQDWYADQIVAHRVYEPREATLAEV--SLSSTIWAALKSSRKISSLFSHQTAA 305
Query: 264 IMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL--L 321
I A AGKNV+V+T T+SGKS+ Y +PVL L L ++AL+++PTKALAQDQ +A+ L
Sbjct: 306 IKAVQAGKNVIVSTATASGKSVVYQVPVLSFLEESLETTALFVYPTKALAQDQKQAMEQL 365
Query: 322 AMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLR 381
++ ++ + YDGDT + R +R+ A ++ N +H +ILP+ + R L NLR
Sbjct: 366 LVSCTGLENVKVAAYDGDTPSELRRGIRETASVIFANFSRIHTAILPHEDLWRRFLKNLR 425
Query: 382 LIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVF 441
++A +DE H Y G FG H A ++RRL R+CS + FV
Sbjct: 426 IVA-------------------VDELHYYSGLFGSHVAQVIRRLRRVCSAIGNHRVRFVS 466
Query: 442 STATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTR 501
+AT +NP H L + +E++ DGSP +K FV++NP K D R
Sbjct: 467 CSATISNPLGHMKNLFGIEDIEVVTEDGSPSGRKDFVIFNPPP-------KDAGDPTLGR 519
Query: 502 NAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTR-EILEETAPHLVDSI 560
++A +++ + L +++ G+R + F + RK+CE+ + R E+ EE +++ +
Sbjct: 520 HSA------MTQATALMRFLMKRGMRVLMFTKIRKICEMAMKTLRTELTEEGRMDILEKV 573
Query: 561 CVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFP-GSIASLWQ 619
YR GY DRRRIE + F GKL G+ ATNALELGID+G +D + L P G IAS+ Q
Sbjct: 574 MAYRGGYSTADRRRIETEAFTGKLLGIVATNALELGIDIGALDAVIMLSVPLGGIASIRQ 633
Query: 620 QAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAA 679
Q GR+GRR + SLAV V +DQYF++ PE +F P+ +D + ++E HL CAA
Sbjct: 634 QGGRAGRRCQDSLAVLVTDNSSVDQYFVQNPEAVFTMPVPDLLVDLHSDIIIEAHLQCAA 693
Query: 680 LEHPLSLIYDEKYFGSGLS---SGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKM---PS 733
E P++L D YFGS L N G+ Y H+K P+
Sbjct: 694 FEMPINL-DDAGYFGSSLKRICDARLVKDNEGW---------------YHTHDKFMPYPA 737
Query: 734 HTISIRAIESERYEVIDMQS------NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKEL 787
+SIR IE +RY V+D+ + ++LEEIE S+A F+ YEGAV++HQG T++V E+
Sbjct: 738 KHVSIRGIEEDRYAVVDVSNLSRGGVAKILEEIEYSRALFETYEGAVFIHQGLTFIVTEV 797
Query: 788 NLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYAT-KISKDQLTKTTAQALACTVTTT 846
+ SK+A ++D+ Y T+ RD+T++ +A T +I + + + A + T
Sbjct: 798 SHDSKVARLVRSDVNYVTRPRDFTNV------DAIQTYRIREVRSSPHRAFFGRVALLTI 851
Query: 847 WFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVE-QNFSFRSGLHAASH 905
FGFY+L G I ++V + P + E+ W+ VP+SV ++ +N +HAASH
Sbjct: 852 VFGFYKLRNGQ--ILESVGMETPPFERETTGFWLDVPKSVLDIMNIKNIHAAEAIHAASH 909
Query: 906 ALLHVVPIYVRCNFSDLAPECP------NP-HDSRYFPERILLYD 943
AL++ P+ DL EC NP +SR P R++ +D
Sbjct: 910 ALINRFPMG-----QDLKTECKVAVKEYNPSENSRKRPARLIFFD 949
>gi|387929491|ref|ZP_10132168.1| ATP-dependent RNA helicase yprA [Bacillus methanolicus PB1]
gi|387586309|gb|EIJ78633.1| ATP-dependent RNA helicase yprA [Bacillus methanolicus PB1]
Length = 767
Score = 417 bits (1072), Expect = e-113, Method: Compositional matrix adjust.
Identities = 255/748 (34%), Positives = 394/748 (52%), Gaps = 78/748 (10%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+VH I R+A VE+P+ + + + AL + GI KLY+HQ + A + K++V T T
Sbjct: 24 IVHWHTIEEREAKTVELPEGIHPSLRQALANRGIYKLYTHQKSAFNAVMENKSIVAVTPT 83
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGD 339
+SGK+LCYNLPVLE + +D ++ ALY+FPTKALAQDQ + + + SI+ YDGD
Sbjct: 84 ASGKTLCYNLPVLETIINDPNARALYIFPTKALAQDQKSEINELIQETGLSINSYTYDGD 143
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T R +R ++ITNPDMLH +ILP+H ++ + NL
Sbjct: 144 TPSNIRQKVRKAGHIVITNPDMLHSAILPHHTKWVSLFENL------------------- 184
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
++VVIDE H Y+G FG H A ++RRL R+C YG+DP F+ ++AT ANP E E
Sbjct: 185 KYVVIDELHIYRGIFGSHVANVIRRLRRIC-RFYGTDPIFICTSATIANPLE-LAETLTE 242
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
+ LI N+G+P +K F+ +NP V+NK N S E L
Sbjct: 243 KKMVLIDNNGAPSGRKHFLFYNP-----PVVNK----------PLNIRRSATLEARKLAG 287
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDF 579
E +++ ++ I F RSR E++L+Y + +++ SI YR GY+ +RR IE+
Sbjct: 288 EFLKNKIQTIVFARSRVRVEILLTYLQNLVKHQLGK--KSIRGYRGGYLPAERREIEKGL 345
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFE 639
G++ GV +TNALELG+D+G + V + G+PG+IAS WQQAGR+GRR SL + VA
Sbjct: 346 RSGEIYGVVSTNALELGVDIGQLQVCIMTGYPGTIASAWQQAGRAGRRHGESLVIIVASS 405
Query: 640 GPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSS 699
PLDQY ++ P+ F E I+ N +L H+ CAA E P + FG+ +
Sbjct: 406 SPLDQYIIQNPDYFFNKSPETARINPDNLIILVDHMKCAAFELPFK---QGEKFGTAETE 462
Query: 700 GITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN----E 755
I +L+ + L + + Y ++ P+H IS+R+ E +ID QSN +
Sbjct: 463 DILE-----FLAEERVLFQNGDKW-YWMNDSFPAHNISLRSASQENVVIID-QSNVANVK 515
Query: 756 VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHV 815
V+ E++ A ++E A+Y+HQG Y V++L+ K A ++ ++ YFT + V
Sbjct: 516 VIGEMDRFSAMTLLHEEAIYLHQGIQYQVEKLDWEEKKAYVREVNVDYFTDANLAVQLKV 575
Query: 816 SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVE------LYLP 869
K D T+ ++ T F I F+T E ++LP
Sbjct: 576 -----LEVDKTRNDNETEVAFGDVSVLAMATIF--------KKIKFETHENIGSGPIHLP 622
Query: 870 KYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDL--APECP 927
+ + + WI + + +K + + GL A+HAL H+ P++V C+ D+ P+
Sbjct: 623 EEELHTSSAWISLQKELKDMGQDRLE--QGLIGAAHALKHIAPLFVMCDPQDIHVVPQVK 680
Query: 928 NPHDSRYFPERILLYDRHPGGTGVSKQV 955
H+ + I YDR+PGG G+S+++
Sbjct: 681 AAHNEK---PTIFFYDRYPGGIGLSEKI 705
>gi|420862273|ref|ZP_15325669.1| putative helicase [Mycobacterium abscessus 4S-0303]
gi|420866858|ref|ZP_15330245.1| putative helicase [Mycobacterium abscessus 4S-0726-RA]
gi|392075189|gb|EIU01023.1| putative helicase [Mycobacterium abscessus 4S-0726-RA]
gi|392077434|gb|EIU03265.1| putative helicase [Mycobacterium abscessus 4S-0303]
Length = 769
Score = 417 bits (1072), Expect = e-113, Method: Compositional matrix adjust.
Identities = 257/743 (34%), Positives = 374/743 (50%), Gaps = 68/743 (9%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
H+ DI AR A + P + +A + G++ +SHQ + + AG++VVVAT T+S
Sbjct: 26 HICDIPARNAEVTSWPQWAHPDAIAAFAAQGVTAPWSHQVAAATLAFAGRHVVVATGTAS 85
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFD--ASIDIGVYDGD 339
GKS+ Y LP+L AL+ + + ALY+ PTKAL DQLRA+ + D + YDGD
Sbjct: 86 GKSVAYQLPILTALASEPRARALYLAPTKALGHDQLRAVRELITGVDNFERVQPCTYDGD 145
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
++ + R + R+++R + TNPDM+H+S+L H ++S L LR
Sbjct: 146 SSNELRRFARESSRWIFTNPDMIHVSLLHNHTRWSAFLRGLR------------------ 187
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
++V+DE H Y+G FG + ALIL+RL RLC YGS P+ VF++AT+ANP L
Sbjct: 188 -YLVVDECHYYRGVFGSNVALILQRLLRLCER-YGSHPTVVFASATTANPGAAAQALIGQ 245
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPIS-EVSYLF 518
E++ DGSP + LW P + T P+S E S L
Sbjct: 246 PVEEVVA-DGSPHGMRTVALWEPPL------------LPITGENGAPVRRPVSTETSRLL 292
Query: 519 AEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERD 578
A++VQ G R +AF RSR+ E+ L E P LV + YRAGY+ EDRR +E+
Sbjct: 293 ADLVQEGARTLAFVRSRRGAEMTALGAAHRLSEVDPGLVSQVAAYRAGYLPEDRRALEQA 352
Query: 579 FFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAF 638
G L G A TNALELG+D+ +D + GFPG++AS WQQAGRSGRR + SL V VA
Sbjct: 353 LSSGTLTGAATTNALELGVDIAGLDAVVVAGFPGTVASFWQQAGRSGRRGQGSLVVLVAR 412
Query: 639 EGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSG-- 696
+ PLD Y + +PE L PIE ID N VL HL+CAA E PL+ D + +G
Sbjct: 413 DDPLDTYLVHHPEALLDKPIEAVVIDPTNPHVLRPHLLCAATELPLTE-DDVRSLDAGQV 471
Query: 697 ----LSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQ 752
+ G+ + GY ++ P L+ P + IR + +++
Sbjct: 472 VSDLVDDGLLRKRPGGYFAA-PGLN--------------PYAAVDIRGSIGGQVMILEAD 516
Query: 753 SNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTD 812
+ VL ++ +A V+ GAVY+H G TY+V L+ IAL Y T R D
Sbjct: 517 TGRVLGTVDTGRAPATVHPGAVYLHSGETYVVDSLDFGDGIALVHNDRPDYSTFARSTID 576
Query: 813 IHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYS 872
I ++G + + L + VT G+ R +G I D VEL +P +
Sbjct: 577 IAITG-------EGERIDLGDIQIGLVPVDVTHQVIGYLRKLT-TGEILDFVELDMPSST 628
Query: 873 YESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHD 931
++AV V P+++ + S LHAA HA + ++P+ C+ D+
Sbjct: 629 LSTKAVMYTVTPEALAGIDIDPLSTPGALHAAEHAAIGLLPLVASCDRGDIGGVSTALQP 688
Query: 932 SRYFPERILLYDRHPGGTGVSKQ 954
P + +YD HPGG G + +
Sbjct: 689 ETGLPT-VFVYDGHPGGAGFAAR 710
>gi|420876161|ref|ZP_15339537.1| putative helicase [Mycobacterium abscessus 4S-0726-RB]
gi|420988889|ref|ZP_15452045.1| putative helicase [Mycobacterium abscessus 4S-0206]
gi|421038507|ref|ZP_15501518.1| putative helicase [Mycobacterium abscessus 4S-0116-R]
gi|421046508|ref|ZP_15509508.1| putative helicase [Mycobacterium abscessus 4S-0116-S]
gi|392067636|gb|EIT93484.1| putative helicase [Mycobacterium abscessus 4S-0726-RB]
gi|392183168|gb|EIV08819.1| putative helicase [Mycobacterium abscessus 4S-0206]
gi|392226721|gb|EIV52235.1| putative helicase [Mycobacterium abscessus 4S-0116-R]
gi|392235961|gb|EIV61459.1| putative helicase [Mycobacterium abscessus 4S-0116-S]
Length = 777
Score = 417 bits (1072), Expect = e-113, Method: Compositional matrix adjust.
Identities = 257/743 (34%), Positives = 374/743 (50%), Gaps = 68/743 (9%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
H+ DI AR A + P + +A + G++ +SHQ + + AG++VVVAT T+S
Sbjct: 34 HICDIPARNAEVTSWPQWAHPDAIAAFAAQGVTAPWSHQVAAATLAFAGRHVVVATGTAS 93
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFD--ASIDIGVYDGD 339
GKS+ Y LP+L AL+ + + ALY+ PTKAL DQLRA+ + D + YDGD
Sbjct: 94 GKSVAYQLPILTALASEPRARALYLAPTKALGHDQLRAVRELITGVDNFERVQPCTYDGD 153
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
++ + R + R+++R + TNPDM+H+S+L H ++S L LR
Sbjct: 154 SSNELRRFARESSRWIFTNPDMIHVSLLHNHTRWSAFLRGLR------------------ 195
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
++V+DE H Y+G FG + ALIL+RL RLC YGS P+ VF++AT+ANP L
Sbjct: 196 -YLVVDECHYYRGVFGSNVALILQRLLRLCER-YGSHPTVVFASATTANPGAAAQALIGQ 253
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPIS-EVSYLF 518
E++ DGSP + LW P + T P+S E S L
Sbjct: 254 PVEEVVA-DGSPHGMRTVALWEPPL------------LPITGENGAPVRRPVSTETSRLL 300
Query: 519 AEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERD 578
A++VQ G R +AF RSR+ E+ L E P LV + YRAGY+ EDRR +E+
Sbjct: 301 ADLVQEGARTLAFVRSRRGAEMTALGAAHRLSEVDPGLVSQVAAYRAGYLPEDRRALEQA 360
Query: 579 FFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAF 638
G L G A TNALELG+D+ +D + GFPG++AS WQQAGRSGRR + SL V VA
Sbjct: 361 LSSGTLTGAATTNALELGVDIAGLDAVVVAGFPGTVASFWQQAGRSGRRGQGSLVVLVAR 420
Query: 639 EGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSG-- 696
+ PLD Y + +PE L PIE ID N VL HL+CAA E PL+ D + +G
Sbjct: 421 DDPLDTYLVHHPEALLDKPIEAVVIDPTNPHVLRPHLLCAATELPLTE-DDVRSLDAGQV 479
Query: 697 ----LSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQ 752
+ G+ + GY ++ P L+ P + IR + +++
Sbjct: 480 VSDLVDDGLLRKRPGGYFAA-PGLN--------------PYAAVDIRGSIGGQVMILEAD 524
Query: 753 SNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTD 812
+ VL ++ +A V+ GAVY+H G TY+V L+ IAL Y T R D
Sbjct: 525 TGRVLGTVDTGRAPATVHPGAVYLHSGETYVVDSLDFGDGIALVHNDRPDYSTFARSTID 584
Query: 813 IHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYS 872
I ++G + + L + VT G+ R +G I D VEL +P +
Sbjct: 585 IAITG-------EGERIDLGDIQIGLVPVDVTHQVIGYLRKLT-TGEILDFVELDMPSST 636
Query: 873 YESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHD 931
++AV V P+++ + S LHAA HA + ++P+ C+ D+
Sbjct: 637 LSTKAVMYTVTPEALAGIDIDPLSTPGALHAAEHAAIGLLPLVASCDRGDIGGVSTALQP 696
Query: 932 SRYFPERILLYDRHPGGTGVSKQ 954
P + +YD HPGG G + +
Sbjct: 697 ETGLPT-VFVYDGHPGGAGFAAR 718
>gi|419713620|ref|ZP_14241044.1| DEAD-box ATP dependent DNA helicase [Mycobacterium abscessus M94]
gi|382946318|gb|EIC70604.1| DEAD-box ATP dependent DNA helicase [Mycobacterium abscessus M94]
Length = 769
Score = 417 bits (1071), Expect = e-113, Method: Compositional matrix adjust.
Identities = 257/743 (34%), Positives = 374/743 (50%), Gaps = 68/743 (9%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
H+ DI AR A + P + +A + G++ +SHQ + + AG++VVVAT T+S
Sbjct: 26 HICDIPARNAEVTSWPQWAHPDAIAAFAAQGVTAPWSHQVAAATLAFAGRHVVVATGTAS 85
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFD--ASIDIGVYDGD 339
GKS+ Y LP+L AL+ + + ALY+ PTKAL DQLRA+ + D + YDGD
Sbjct: 86 GKSVAYQLPILTALASEPRARALYLAPTKALGHDQLRAVRELITGVDNFERVQPCTYDGD 145
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
++ + R + R+++R + TNPDM+H+S+L H ++S L LR
Sbjct: 146 SSNELRRFARESSRWIFTNPDMIHVSLLHNHTRWSAFLRGLR------------------ 187
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
++V+DE H Y+G FG + ALIL+RL RLC YGS P+ VF++AT+ANP L
Sbjct: 188 -YLVVDECHYYRGVFGSNVALILQRLLRLCER-YGSHPTVVFASATTANPGAAAQALIGQ 245
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPIS-EVSYLF 518
E++ DGSP + LW P + T P+S E S L
Sbjct: 246 PVEEVVA-DGSPHGMRTVALWEPPL------------LPITGENGAPVRRPVSTETSRLL 292
Query: 519 AEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERD 578
A++VQ G R +AF RSR+ E+ L E P LV + YRAGY+ EDRR +E+
Sbjct: 293 ADLVQEGARTLAFVRSRRGAEMTALGAAHRLAEVDPGLVSQVAAYRAGYLPEDRRALEQA 352
Query: 579 FFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAF 638
G L G A TNALELG+D+ +D + GFPG++AS WQQAGRSGRR + SL V VA
Sbjct: 353 LSSGTLTGAATTNALELGVDIAGLDAVVVAGFPGTVASFWQQAGRSGRRGQGSLVVLVAR 412
Query: 639 EGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSG-- 696
+ PLD Y + +PE L PIE ID N VL HL+CAA E PL+ D + +G
Sbjct: 413 DDPLDTYLVHHPEALLDKPIEAVVIDPTNPHVLRPHLLCAATELPLTE-DDVRSLDAGQV 471
Query: 697 ----LSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQ 752
+ G+ + GY ++ P L+ P + IR + +++
Sbjct: 472 VSDLVDDGLLRKRPGGYFAA-PGLN--------------PYAAVDIRGSIGGQVMILEAD 516
Query: 753 SNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTD 812
+ VL ++ +A V+ GAVY+H G TY+V L+ IAL Y T R D
Sbjct: 517 TGRVLGTVDTGRAPATVHPGAVYLHSGETYVVDSLDFGDGIALVHNDRPDYSTFARSTID 576
Query: 813 IHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYS 872
I ++G + + L + VT G+ R +G I D VEL +P +
Sbjct: 577 IAITG-------EGERIDLGDIQIGLVPVDVTHQVIGYLRKLT-TGEILDFVELDMPSST 628
Query: 873 YESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHD 931
++AV V P+++ + S LHAA HA + ++P+ C+ D+
Sbjct: 629 LSTKAVMYTVTPEALAGIDIDPLSTPGALHAAEHAAIGLLPLVASCDRGDIGGVSTALQP 688
Query: 932 SRYFPERILLYDRHPGGTGVSKQ 954
P + +YD HPGG G + +
Sbjct: 689 ETGLPT-VFVYDGHPGGAGFAAR 710
>gi|349577342|dbj|GAA22511.1| K7_Hrq1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 1077
Score = 417 bits (1071), Expect = e-113, Method: Compositional matrix adjust.
Identities = 257/772 (33%), Positives = 402/772 (52%), Gaps = 86/772 (11%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
+M+E L+ Q+ H I +R A + L ++ YSHQA++I
Sbjct: 243 QMIEKLKSTEFYASQIKHCFTIPSRTAKYKGLCFELAPEVYQGMEH---EHFYSHQADAI 299
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRA----L 320
+ G NV++ T TSSGKSL Y L ++ L D S+ +Y+FPTKALAQDQ RA L
Sbjct: 300 NSLHQGNNVIITTSTSSGKSLIYQLAAIDLLLKDPESTFMYIFPTKALAQDQKRAFKVIL 359
Query: 321 LAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNL 380
+ + +A +D YDGDT ++R ++R NAR++ TNPDM+H SILP H + L +L
Sbjct: 360 SKIPELKNAVVD--TYDGDTEPEERAYIRKNARVIFTNPDMIHTSILPNHANWRHFLYHL 417
Query: 381 RLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVY-GSDPSF 439
+L VV+DE H YKG FG H AL++RRL RLC Y S F
Sbjct: 418 KL-------------------VVVDELHIYKGLFGSHVALVMRRLLRLCHCFYENSGLQF 458
Query: 440 VFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDD 499
+ +AT +P +H ++ ++ + LI DGSP K V+WNP +L + +
Sbjct: 459 ISCSATLKSPVQHMKDMFGINEVTLIHEDGSPTGAKHLVVWNP-----PILPQHE----- 508
Query: 500 TRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETA-PHLVD 558
K + I E + + +++ + +R IAFC R++CEL++ R I ET LV
Sbjct: 509 -----RKRENFIRESAKILVQLILNNVRTIAFCYVRRVCELLMKEVRNIFIETGREDLVT 563
Query: 559 SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLW 618
+ YR GY A DRR+IER+ F G L V +TNALELGID+G +D L GFP S+A+
Sbjct: 564 EVMSYRGGYSASDRRKIEREMFHGNLKAVISTNALELGIDIGGLDAVLMCGFPLSMANFH 623
Query: 619 QQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFK----SPIECCHIDAQNHKVLEQH 674
QQ+GR+GRR SL + VA + P+DQ+++ +PE L + + +D N +LE H
Sbjct: 624 QQSGRAGRRNNDSLTLVVASDSPVDQHYVAHPESLLEVNNFESYQDLVLDFNNILILEGH 683
Query: 675 LVCAALEHPLSLIYDEKYFGSGLSSGITTLK----NRGYLSSDPSLDSSAKIFEYIGHEK 730
+ CAA E P++ D++YF I + GY +S+ L
Sbjct: 684 IQCAAFELPINFERDKQYFTESHLRRICVERLHHNQDGYHASNRFL-------------P 730
Query: 731 MPSHTISIRAIESERYEVIDMQS--NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELN 788
PS +S+R E +++ V+D+ + N ++EEIE S+ F +Y+G +++HQG+ YLVKE N
Sbjct: 731 WPSKCVSLRGGEEDQFAVVDITNGRNIIIEEIEASRTSFTLYDGGIFIHQGYPYLVKEFN 790
Query: 789 LSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTW- 847
+ A Q+ D+ + T RD+TD+ + ++ + L + + TT
Sbjct: 791 PDERYAKVQRVDVDWVTNQRDFTDV------DPQEIELIR-SLRNSDVPVYFGKIKTTII 843
Query: 848 -FGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQ-SVKAVVEQNFSFRSGLHAASH 905
FGF+++ + II D +E + P S+ +WI +P+ +++ ++ + +H A H
Sbjct: 844 VFGFFKVDKYKRII-DAIETHNPPVIINSKGLWIDMPKYALEICQKKQLNVAGAIHGAQH 902
Query: 906 ALLHVVPIYVRCNFSDLAPECPNP-------HDSRYFPERILLYDRHPGGTG 950
A++ ++P ++ ++ EC P R P R++ YD G G
Sbjct: 903 AIMGMLPRFIVAGVDEIQTECKAPEKEFAERQTKRKRPARLIFYDSKGGKYG 954
>gi|410459669|ref|ZP_11313399.1| ATP-dependent RNA helicase yprA [Bacillus azotoformans LMG 9581]
gi|409929827|gb|EKN66870.1| ATP-dependent RNA helicase yprA [Bacillus azotoformans LMG 9581]
Length = 763
Score = 417 bits (1071), Expect = e-113, Method: Compositional matrix adjust.
Identities = 259/761 (34%), Positives = 403/761 (52%), Gaps = 67/761 (8%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
+++EH++ +V+ I R+A V P ++ K AL+S G+ +LY+HQ ++I
Sbjct: 9 QIIEHIQTDEQYSNNIVNWHTIPEREAQTVPFPVSIDSRLKEALQSRGVKELYTHQGQAI 68
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
+ +N V T T+SGK+LCYNLPVL+ + D SS ALY+FPTKALAQDQ L +
Sbjct: 69 DITRKRENFVAVTPTASGKTLCYNLPVLQQIIDDPSSRALYIFPTKALAQDQKSELNELI 128
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
+A +I+ YDGDT R +R ++ITNPDMLH +ILP+H ++ + NL
Sbjct: 129 EALGININSYTYDGDTPSNIRQKVRQAGHIVITNPDMLHSAILPHHTKWVALFENL---- 184
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
+F+VIDE H Y+G FG H A ++RRL R+C+ YGS+P F+ ++A
Sbjct: 185 ---------------KFIVIDELHIYRGVFGSHVANVIRRLKRICA-FYGSNPIFICTSA 228
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T ANP+E +L + LI +G+P +K FV +NP V+NK
Sbjct: 229 TIANPKELAEKLTG-EKVTLIDKNGAPAGKKHFVFYNP-----PVVNKP----------L 272
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILE-ETAPHLVDSICVY 563
N S EV + +E +++ ++ I F RSR E++L+Y + +++ E P SI Y
Sbjct: 273 NIRRSATLEVRKIASEFLKNKIQTIVFARSRVRVEILLTYLQGLVQKELGP---KSIRGY 329
Query: 564 RAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGR 623
R GY+ + RR IE G + GV +TNALELG+D+G + V + G+PG+IAS WQQAGR
Sbjct: 330 RGGYLPKQRREIEHGLRNGDIYGVVSTNALELGVDIGQLQVCIMTGYPGTIASAWQQAGR 389
Query: 624 SGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHP 683
+GRR+ +L VA + PLDQY + +P+ F E I+ N +L HL CAA E P
Sbjct: 390 AGRRQGEALIFMVASQAPLDQYVIGHPDYFFNRSPETAQINPDNLIILVDHLKCAAYELP 449
Query: 684 LSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIES 743
+ + G L + L L + + K F ++ P+H IS+R+
Sbjct: 450 FK--KGDTFDGVELEDILEFLTEEQVLHFN-----NGKWFWM--NQSFPAHNISLRSASQ 500
Query: 744 ERYEVIDMQSN----EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKA 799
E +ID QS+ +V+ E++ A +++ A+Y+H+G + V++L+ K A ++
Sbjct: 501 ENVVIID-QSDVAHVKVIGEMDRFSAMTLLHDEAIYLHEGVQFQVEKLDWEEKKAFVREV 559
Query: 800 DLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGI 859
D+ Y+T + V + T+ + + T QA+A F + GSG
Sbjct: 560 DVDYYTDANLAVQLRVLEVDKERETEFASVSYGEVTVQAMATVFKKIKFDTHENI-GSGP 618
Query: 860 IFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNF 919
I +LP+ + A WI + + +K + GL ++ L HV P++V C+
Sbjct: 619 I------HLPEEELHTNAAWISLNEGIKNKLTDK-KLEEGLIGIANLLRHVAPLHVMCDP 671
Query: 920 SDL--APECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDM 958
SDL P+ H + I LYDR+PGG G+S++V ++
Sbjct: 672 SDLHVVPQVKAVHSEK---PTIFLYDRYPGGVGLSEKVYEI 709
>gi|452976621|gb|EME76436.1| ATP-dependent helicase YprA [Bacillus sonorensis L12]
Length = 757
Score = 417 bits (1071), Expect = e-113, Method: Compositional matrix adjust.
Identities = 256/756 (33%), Positives = 397/756 (52%), Gaps = 63/756 (8%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
EM++ L++ Q+VH I + A + P+ L + AL+ GI KLYSHQAE+
Sbjct: 10 EMIQFLKEDQTFSKQIVHWHTIEKKDADYRDFPERLNEKLVQALRRRGIEKLYSHQAEAF 69
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
+ S G+NV + T T+SGK+LCYNLPV++ ++ D + ALY+FPTKAL+QDQ L +
Sbjct: 70 LHSANGRNVTLVTPTASGKTLCYNLPVIQRITEDSDARALYLFPTKALSQDQKSELNELI 129
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
+ ASI+ YDGDT+ R +R ++ITNPDMLH +ILP+H ++ + NL
Sbjct: 130 EEIGASINCYTYDGDTSPAIRQKVRKAGHIVITNPDMLHSAILPHHTKWVSLFENL---- 185
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
+++VIDE H Y+G FG H A ++RRL R+C YGS P F+ ++A
Sbjct: 186 ---------------KYIVIDELHVYRGVFGSHVANVIRRLLRICE-FYGSRPQFICTSA 229
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T ANP E L + LI N+G+P +K F+ +NP ++N +A
Sbjct: 230 TIANPLELAETLTG-QPMHLISNNGAPSGRKHFLFYNP-----PIVN----------HAL 273
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYR 564
N S EV L +E +++ ++ I F RSR E++L+Y +++++ +I YR
Sbjct: 274 NIRKSATLEVRKLASEFLKNQIQTIVFARSRVRVEIILTYLQDVMKPIVG--AHAIQGYR 331
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
GY+ +RR IE+ G++ GV +TNALELG+D+G + + G+PG+I+S WQQAGR+
Sbjct: 332 GGYLPTERRMIEKGLRSGEIKGVVSTNALELGVDIGQLQTCIMTGYPGTISSAWQQAGRA 391
Query: 625 GRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
GRR +L V VA PLDQY ++ P+ FK E I+ N +L H+ CAA E P
Sbjct: 392 GRRHNEALIVMVASSAPLDQYIVQNPDYFFKQNPETAVINPDNLVILVDHIKCAAFELPF 451
Query: 685 SLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESE 744
FG G+ YL+ + L S + + ++ ++ P+H IS+R+ E
Sbjct: 452 K---RTDSFG-----GVEIEDILEYLAEERVLHLSGETYHWM-NDAFPAHGISLRSASQE 502
Query: 745 RYEVIDMQSNE---VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADL 801
+ID E V+ E++ A +++ A+Y+HQG Y V++L+ K A ++ +
Sbjct: 503 NVVIIDQSKREKAKVIGEMDRFSAMTLLHDEAIYLHQGIQYQVEKLDWEEKKAFVREVKV 562
Query: 802 KYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIF 861
Y+T + V + T ++ T QA A F + GSG I
Sbjct: 563 DYYTDANLAVLLKVLEIDQTKETDAAQFGFGDVTVQAKATIFKKIKFETHENI-GSGPI- 620
Query: 862 DTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSD 921
+LP+ + A W+QV + + L A++ L +V + V C+ SD
Sbjct: 621 -----HLPEEELHTNAAWVQVNDEERQHW-NDIKLEEALLGAANVLGYVAALKVMCDPSD 674
Query: 922 LA--PECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
L P+ H+ + I LYDR+PGG G+S++V
Sbjct: 675 LHVFPQIKAVHNEK---PTIFLYDRYPGGVGLSQKV 707
>gi|342877968|gb|EGU79382.1| hypothetical protein FOXB_10106 [Fusarium oxysporum Fo5176]
Length = 1139
Score = 417 bits (1071), Expect = e-113, Method: Compositional matrix adjust.
Identities = 263/778 (33%), Positives = 415/778 (53%), Gaps = 79/778 (10%)
Query: 205 EMVEHLRKGIGSQGQMVHVED--ISARKAVLVEIPDALLDNTKSAL-KSTGISKLYSHQA 261
E+V+ L++ GQ+V ++AV ++ L + +AL + GI++ Y+HQ+
Sbjct: 316 EIVQELKESPWYTGQIVPDGHRVFEKQEAVYGDLNFLLSQDLVNALYNAKGITQFYAHQS 375
Query: 262 ESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALL 321
E++ + GK+VVV+T TSSGKSL Y LPV+ AL D +S A+Y+FPTKALAQDQ R+L
Sbjct: 376 EALNSLHDGKHVVVSTSTSSGKSLIYQLPVIRALEEDYNSRAMYIFPTKALAQDQKRSLK 435
Query: 322 AMTKAFDA--SIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSN 379
M + +DGDT +R +R+ AR++ TNPDMLH++ILP ++ L N
Sbjct: 436 EMMSYMPGLEETMVETFDGDTPMTERNEIREQARIIFTNPDMLHITILPQEERWRSYLKN 495
Query: 380 LRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSF 439
L+ +VV+DE H Y G G H + I+RRL R+C+ V F
Sbjct: 496 LK-------------------YVVVDELHYYNGQMGSHMSFIMRRLRRICAAVGNRRVKF 536
Query: 440 VFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDD 499
+ +AT ANP +H + + ++LI DGSP +K F+ WN T D
Sbjct: 537 ISCSATVANPEQHFKTIFGIENVQLIDYDGSPSGRKEFLCWN-------------TPYKD 583
Query: 500 TRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETA-PHLVD 558
+ A+ S E + LF ++ G+R IAFCR R CEL++S ++ LE P +
Sbjct: 584 PGDPASGRGSTKFECARLFCALMLRGVRIIAFCRVRAQCELLVSTIKQELESLGRPECTN 643
Query: 559 SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLW 618
+ YR GY A+DRRRIE + F G+L G+ AT ALELGID+G +D + GFP +IA+L
Sbjct: 644 LVMGYRGGYTAQDRRRIETEMFQGQLLGIVATTALELGIDIGSLDCVMTWGFPYTIANLR 703
Query: 619 QQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCA 678
QQ+GR+GRR + SL++ V DQ++M+ P++LF P +D +N V E H+ CA
Sbjct: 704 QQSGRAGRRNKDSLSILVGDGFATDQHYMQNPDELFTKPNCELQVDLENMLVREGHIQCA 763
Query: 679 ALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIG----HEK---M 731
A E P+ D KYFG L P + I + +G H++ +
Sbjct: 764 AYEMPIRPKDDAKYFGKDL----------------PKICMERLIKDDMGFYHCHDRFRPV 807
Query: 732 PSHTISIRAIESERYEVIDMQS--NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNL 789
P+ ++IR E + + +ID+ + N VLEE+E S+A F +Y+GA+++HQG+ YLV++
Sbjct: 808 PAKYVAIRDTEDDHFAIIDITNGRNVVLEELEASRATFTLYDGAIFLHQGNPYLVRDFQP 867
Query: 790 SSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFG 849
+A ++ +++ T RDYTDI + I +++ A + FG
Sbjct: 868 DKGMARVERVKVEWTTIQRDYTDI-----DPTETEAIRTISNSRSHAYYGTIKIQQNVFG 922
Query: 850 FYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVV-EQNFSFRSGLHAASHALL 908
F+++ + + ++ D V++ P S+ +W+ VP+ +++ E+ + +HAA HA++
Sbjct: 923 FFKVDKKNRVL-DAVQVDNPPVIRFSKGMWLDVPKKAMSILQERRLHIAAAIHAAEHAIM 981
Query: 909 HVVPIYVRCNFSDLAPECPNP-------HDSRYFPERILLYDRH--PGGTGVSKQVTD 957
++P +V D+ EC R P R+ YD GG+G+S + D
Sbjct: 982 SLLPAFVISMPGDVRTECKTAVKEFAKQESQRKRPARLTFYDAKGGAGGSGISTKAFD 1039
>gi|255718071|ref|XP_002555316.1| KLTH0G06402p [Lachancea thermotolerans]
gi|238936700|emb|CAR24879.1| KLTH0G06402p [Lachancea thermotolerans CBS 6340]
Length = 1072
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 245/724 (33%), Positives = 383/724 (52%), Gaps = 83/724 (11%)
Query: 256 LYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQD 315
YSHQA++I + GKNV+V T TSSGKS Y L ++ L D ++ +Y+FPTKALAQD
Sbjct: 285 FYSHQADAINSIHEGKNVIVTTSTSSGKSFIYQLSAIDILLKDPQATFMYIFPTKALAQD 344
Query: 316 QLRALLAMTKAFD--ASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQF 373
Q RA + + I + YDGDT Q+ R ++R NAR++ TNPDM+H SILP H +
Sbjct: 345 QKRAFQVLLSKIPKLSHIIVDNYDGDTEQEKRGYVRKNARVIFTNPDMVHASILPNHPNW 404
Query: 374 SRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVY 433
L L ++ VV+DE H YKG FG H AL++RRL RLC Y
Sbjct: 405 RHFL-------------------LHMKLVVVDELHMYKGLFGSHVALVMRRLVRLCQGYY 445
Query: 434 GS-DPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNK 492
G+ D F+ +AT +P +H + + + LI DGSP +K V+WNP + + +
Sbjct: 446 GNNDVRFISCSATLKHPVDHMKNIFGIEDVTLIHEDGSPRGEKHLVVWNPPVLPQHMRRR 505
Query: 493 SQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEET 552
I E + + ++V +R IAFC R++CEL++ R I +E
Sbjct: 506 ENF---------------IQESAKILVQLVLENVRTIAFCYVRRVCELLMKEVRTIFKEM 550
Query: 553 AP-HLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFP 611
L++ + YR GY DRR+IE++ F G L V +TNALELG+D+G +D L GFP
Sbjct: 551 NRLDLLNEVMSYRGGYSPSDRRKIEQEMFHGNLKAVISTNALELGVDIGGLDAVLMCGFP 610
Query: 612 GSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPE--------KLFKSPIECCHI 663
S+A+ QQ+GR+GRR R S+ + VA + P+DQ+++ + E LF+ + +
Sbjct: 611 LSLANFHQQSGRAGRRNRDSMTLVVASDSPVDQHYVSHSEVLRDGENTDLFQELV----L 666
Query: 664 DAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIF 723
D +N +LE H+ CAA E P+ + D+ YF + + T + R + S+
Sbjct: 667 DFENVLILEGHIQCAAFELPIVIQRDKAYFEAKILE--KTCEERLHHDSN---------- 714
Query: 724 EYIGHEKM---PSHTISIRAIESERYEVIDMQS--NEVLEEIEESKAFFQVYEGAVYMHQ 778
Y H K P+ +S+R E ++Y V+D+ + N V+EEIE ++ F +Y+G +++HQ
Sbjct: 715 GYHTHNKFLPWPAKLVSLRGSEKDQYAVVDITNGRNVVIEEIEATRTSFTLYDGGIFIHQ 774
Query: 779 GHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQA 838
G+ YLVKE N A Q+ D+ + T RD+TD+ + +D
Sbjct: 775 GYPYLVKEFNPDEHYAKVQRVDVDWTTSQRDFTDV---DPQEIQMIRSLEDSDVPVYFGK 831
Query: 839 LACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQV-PQSVKAVVEQNFSFR 897
+ T+ FG++++ + I+ D VE + P +S+ +WI + P SV ++ +
Sbjct: 832 IQTTIVV--FGYFKVDKYKRIL-DAVETHNPPVIIDSKGLWIDIPPNSVNLCKQKQLNVA 888
Query: 898 SGLHAASHALLHVVPIYVRCNFSDLAPECPNP-------HDSRYFPERILLYDRHPG--G 948
G+HAA HA++ ++P ++ ++ EC P R P R++ +D G G
Sbjct: 889 GGIHAAQHAIMGLLPAFIVAGVDEIQTECKAPEKEFAERQTQRKRPARLIFFDSKGGQYG 948
Query: 949 TGVS 952
+G+S
Sbjct: 949 SGLS 952
>gi|54022329|ref|YP_116571.1| ATP-dependent RNA helicase [Nocardia farcinica IFM 10152]
gi|54013837|dbj|BAD55207.1| putative ATP-dependent RNA helicase [Nocardia farcinica IFM 10152]
Length = 796
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 258/753 (34%), Positives = 388/753 (51%), Gaps = 52/753 (6%)
Query: 206 MVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIM 265
++ +++G G ++ H D+ AR A E P + + +AL + GI ++HQ +
Sbjct: 17 LLNRVQRG-GPDRRLTHAVDLPARPAETTEWPAWVHPDVIAALDTYGIGAPWTHQTRTAE 75
Query: 266 ASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT- 324
+ G++VVV+T T+SGKSL Y LPVL AL D ++ALY+ PTKAL DQLRAL +T
Sbjct: 76 LAAGGQHVVVSTGTASGKSLGYQLPVLTALREDPRATALYLAPTKALGADQLRALGELTH 135
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
+ + YDGDT + R W+RDNAR + TNPDMLH+ +L H +++R+
Sbjct: 136 EGPLREVHPATYDGDTPAEIRQWVRDNARWIFTNPDMLHVGMLRSHQRWARV-------- 187
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
F +R+VV+DE HAY+G FG H AL+LRRL R+ +H YG+DP FV +A
Sbjct: 188 -----------FRRLRYVVVDECHAYRGVFGSHVALVLRRLRRVAAH-YGADPVFVLCSA 235
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T+A+P L + + DGSP + LW P L + + N A
Sbjct: 236 TTADPAAAASRLIGAPCVA-VTEDGSPRGARTVALWEPP------LTAATGE-----NGA 283
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYR 564
S E + + A++V G R + F RSR+ EL R +L E P L + + YR
Sbjct: 284 PVRRSATIEAARIMADLVVEGARTLTFVRSRRSAELAAREARGLLGEVDPRLAERVAAYR 343
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
AGY+AEDRR +E G+L G A TNALELG+D+ +D + GFPG++AS WQQAGR+
Sbjct: 344 AGYLAEDRRELEAALSDGRLLGAATTNALELGVDIAGLDAVVISGFPGTVASFWQQAGRA 403
Query: 625 GRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
GRR + SL + VA + PLD Y + +P+ L P+E D N VL L+CAA E PL
Sbjct: 404 GRRSQGSLVLLVATDDPLDTYLVHHPDALLDKPVEATITDPTNPYVLGPQLLCAAAELPL 463
Query: 685 SLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESE 744
+ E+ G + + L +G + + + A + H P + +R
Sbjct: 464 TDAEAEEL---GATRVLADLAAQGRIRRRVAPRTGAGRWHITAHTH-PHDDVDVRGGIGA 519
Query: 745 RYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYF 804
++D ++ +L + +A ++ GAV++HQG T++V EL+L+ +A D +
Sbjct: 520 PVAIVDGETGRLLGTADAGRAPATLHPGAVHLHQGETFVVDELDLTDGVAFVHAGDPGWT 579
Query: 805 TKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTV 864
T R T + V + + T+A A C VT+ G+ R +G + D V
Sbjct: 580 TSARKLTSLTVE------SVLAERHHGGVTSAFAQVC-VTSQVIGYLRTLP-TGEVMDLV 631
Query: 865 ELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFR---SGLHAASHALLHVVPIYVRCNFSD 921
EL LP + ++AV+ V + A E R LHAA HA + ++P+ C+ D
Sbjct: 632 ELDLPAQTLPTKAVFYTVTPDLLA--EAGIDARRIPGALHAAEHAAIGLLPLVATCDRWD 689
Query: 922 LAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
+ H P + +YD PGG G +++
Sbjct: 690 IGGVSTAEHPDTGLPT-VFVYDGQPGGAGFAER 721
>gi|299753741|ref|XP_001833458.2| DEAD/H helicase [Coprinopsis cinerea okayama7#130]
gi|298410441|gb|EAU88392.2| DEAD/H helicase [Coprinopsis cinerea okayama7#130]
Length = 999
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 271/779 (34%), Positives = 407/779 (52%), Gaps = 90/779 (11%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEI-PDALLDNTKSALKSTGISKLYSHQAES 263
+++E + Q Q++H + AR+A L + P +++ L S ISK YSHQA++
Sbjct: 191 DIIEEITSQSWYQDQILHRQTFEAREARLGTLDPPPSETISQALLDSRKISKYYSHQAQA 250
Query: 264 IMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQ---LRAL 320
I A GK+VV +T T+SGKSL Y +P+L AL D S++A++++PTKALAQDQ L L
Sbjct: 251 IQAIRKGKHVVASTSTASGKSLIYQVPLLMALEQDPSATAIFVYPTKALAQDQKASLEQL 310
Query: 321 LAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNL 380
+ + + + + YDGDT Q +R+ +R+ A ++ TN D +H SILP+ ++ L L
Sbjct: 311 IFTCRGLN-RLTVATYDGDTAQDERIKIRETASVIFTNFDTIHTSILPHEEKWRTWLKRL 369
Query: 381 RLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFV 440
+L V+DE H Y G FG H ALILRR R+C+ + FV
Sbjct: 370 KLF-------------------VVDELHYYTGLFGSHVALILRRFRRICAALGNRRVQFV 410
Query: 441 FSTATSANPREHCMELANLSTLEL--IQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMD 498
TAT ANP H ++ LS E+ + DG+P +K F++WNP +
Sbjct: 411 SCTATLANPARHMEKMFGLSENEVHPVTEDGAPSNKKDFLVWNPP-------------LI 457
Query: 499 DTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LV 557
D + T S ++E + L +++ G+R I FC+ RK+CEL + + L H ++
Sbjct: 458 DPLEPSLGTKSAMNEATSLMRFLMKRGVRVILFCKIRKICELAMKTLKADLSNEGRHDIL 517
Query: 558 DSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASL 617
+ YR GY EDRRRIE D F G+L G+ +TNALELGID+G +D + LGFP +I S
Sbjct: 518 KKVRPYRGGYSREDRRRIEADAFAGELLGIVSTNALELGIDIGVLDTVIMLGFPMTIPSF 577
Query: 618 WQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVC 677
QQAGR+GRR + SL V V +DQY+ K P +LF ++ +D + VLE HL C
Sbjct: 578 RQQAGRAGRRSQDSLVVLVVEPFAIDQYYAKNPTELFDGRLDELMVDIDSKVVLEAHLQC 637
Query: 678 AALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTIS 737
AA E PLS DE++FG S + R D + Y PS +S
Sbjct: 638 AAFEMPLSG-EDEEWFG---PSTREICEQRLLKDKDGWYHTHPNFLPY------PSAHVS 687
Query: 738 IRAIESERYEVIDMQSN----EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKI 793
IR + E+Y V+++ S+ +EE+E S+A F+VYEG V++HQG T++VKE++ S++
Sbjct: 688 IRGAQEEKYLVVEVLSDGRTLNQIEEVEVSRAMFEVYEGGVFLHQGSTFIVKEISHDSRV 747
Query: 794 ALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACT-------VTTT 846
A +A++ Y T RD+T++ T+ +A AC V
Sbjct: 748 AKVLRAEVNYITSPRDFTNVDAVQ--------------TQRIRRAKACLAYYGKVHVEVK 793
Query: 847 WFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQ-NFSFRSGLHAASH 905
FGF+++ S I D V+L P + ++ WI VP+ + ++ + +HAA H
Sbjct: 794 VFGFFKIRNKS--ILDAVDLDTPSWERDTSGFWIDVPKPILELLRSLQVNVAEAIHAAEH 851
Query: 906 ALLHVVPIYVRCNFSDLAPECPNP-------HDSRYFPERILLYDRHPGGTGVSKQVTD 957
A L+ P+ D+ EC +R P R++ YD G GVS + D
Sbjct: 852 AFLNQFPLS-----EDVKTECKAAEKEYRVTESTRKRPARLIFYDAVGKGGGVSSKAFD 905
>gi|365157624|ref|ZP_09353876.1| hypothetical protein HMPREF1015_00036 [Bacillus smithii 7_3_47FAA]
gi|363623149|gb|EHL74275.1| hypothetical protein HMPREF1015_00036 [Bacillus smithii 7_3_47FAA]
Length = 762
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 260/763 (34%), Positives = 399/763 (52%), Gaps = 78/763 (10%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E +E L+ + Q+VH I ++A P L K L+ GI +LY+HQ +
Sbjct: 9 EAIEWLKTDESIKDQIVHWHTIPEKEAKTAPFPKTLHPLLKEGLQKRGIDRLYTHQLAAY 68
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
+ G++ VV T T+SGK+LCYNLPVLE++ D SS ALY+FPTKAL+QDQ L M
Sbjct: 69 EKARNGESFVVVTPTASGKTLCYNLPVLESILSDSSSRALYLFPTKALSQDQKSELNEMI 128
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
A I+ YDGDT R +R ++ITNPDMLH ILP+H ++ + NL
Sbjct: 129 MEIGADINSYTYDGDTPSGIRQKIRKAGHIVITNPDMLHTGILPHHTKWVSLFENL---- 184
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
+FV+IDE H Y+G FG H A ++RRL R+C YGSDP F+ ++A
Sbjct: 185 ---------------KFVIIDELHIYRGVFGSHVANVIRRLKRIC-RFYGSDPVFICTSA 228
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T ANP+E + + + LI N+G+P +K FV +NP V+NK
Sbjct: 229 TIANPKELAQAICE-TPMALIDNNGAPSGKKHFVFYNPL-----VVNK----------PL 272
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILE-ETAPHLVDSICVY 563
N S + EV L E++++ ++ I F RSR EL+LSY +E+++ E P SI Y
Sbjct: 273 NIRRSALFEVRKLAGELLKNKIQTIVFARSRVRVELLLSYLQELVQHELGP---KSIRGY 329
Query: 564 RAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGR 623
R GY+ +RR IE G + GV +TNALELG+D+G + + G+PGS++S+WQQAGR
Sbjct: 330 RGGYLPSERREIEEGLRKGDIYGVVSTNALELGVDIGQLQACVMTGYPGSVSSVWQQAGR 389
Query: 624 SGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHP 683
+GRR+ SL + VA PLDQY + +P+ E I+ N +L H+ CAA E P
Sbjct: 390 AGRRQGESLVIMVATSSPLDQYIVDHPDYFLNKKPETVRINPDNLIILVDHIKCAAYELP 449
Query: 684 LSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIES 743
+ FG+ I +L+ + L + + ++ ++ P+H IS+R+
Sbjct: 450 FQ---KGETFGNAEVEEILE-----FLTEERILHYKGERWFWM-NDSFPAHNISLRSASQ 500
Query: 744 ERYEVIDMQSN---EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKAD 800
E +ID +V+ E++ A ++E A+Y+HQG Y V++L+ K A ++ D
Sbjct: 501 ENVVIIDTTETANVKVIGEMDRFSAMTLLHEEAIYLHQGIQYQVEKLDWDEKKAYVREVD 560
Query: 801 LKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQAL------ACTVTTTWFGFYRLW 854
+ Y+T N A ++ + + QAL + T F +L
Sbjct: 561 VDYYTD-----------ANLAIQLQVLEIDKQRGNEQALISFGDVGIHILPTIFKKIKLD 609
Query: 855 RGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIY 914
I + ++LP+ + A WI + Q +K E++ GL A+H+L V+P++
Sbjct: 610 THENI--GSGPIHLPEEEIHTSAAWISLQQDLKTFSEEH--LEEGLIGAAHSLKAVIPLH 665
Query: 915 VRCNFSD--LAPECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
+ C+ SD +AP+ ++ + I +YD +PGG G+S +V
Sbjct: 666 ILCDPSDIHIAPQVKANYNGK---PTIFIYDHYPGGIGLSTEV 705
>gi|194016809|ref|ZP_03055422.1| YprA [Bacillus pumilus ATCC 7061]
gi|194011415|gb|EDW20984.1| YprA [Bacillus pumilus ATCC 7061]
Length = 748
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 257/764 (33%), Positives = 408/764 (53%), Gaps = 84/764 (10%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E+++ L+K Q+ H +I A+ A +P+ + + K AL+ G+S+LY HQ E+
Sbjct: 8 ELIKELKK----DKQVEHWHEIEAKPAQTSPVPERVHEKLKKALEKRGVSELYIHQKEAF 63
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
+ ++VV T T+SGK+LCYNLPVL+++ D +S +LY+FPTKALAQDQ L +
Sbjct: 64 ERVMDAEHVVTVTPTASGKTLCYNLPVLQSIVEDQTSRSLYLFPTKALAQDQKSELNEII 123
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
D I YDGDT+ R +R ++ITNPDMLH +ILP+H ++ + NL
Sbjct: 124 HEMDVPIHSETYDGDTSPAIRQRVRQAGHIVITNPDMLHSAILPHHTKWVSLFENL---- 179
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
+++VIDE H Y+G FG H A ++RRL R+C+ YGSDP F+ ++A
Sbjct: 180 ---------------KYIVIDELHTYRGVFGSHVANVIRRLKRICA-FYGSDPIFICTSA 223
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T ANP+E +L S + LI+ +G+P +K FV +NP V+NK
Sbjct: 224 TIANPKELAQQLTG-SKMHLIERNGAPSGKKNFVFYNP-----PVVNK----------PL 267
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREIL-EETAPHLVDSICVY 563
N S + V+ L ++ ++ I F RSR E++LS+ +E++ +E P SI Y
Sbjct: 268 NIRQSAATVVNQLAKTFLKEKIQTIVFARSRVRVEVILSHIQELVKKEIGP---KSIRGY 324
Query: 564 RAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGR 623
R GY+ ++RR IE+ G + GV +TNALELG+D+G + V + G+PGS+AS WQQAGR
Sbjct: 325 RGGYLPKERRVIEKGLREGDILGVVSTNALELGVDIGQLKVCIMTGYPGSVASTWQQAGR 384
Query: 624 SGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHP 683
+GRR +L + VA PLDQY +++PE F P E I+ +N +L HL CA+ E P
Sbjct: 385 AGRRHEEALIIMVASSAPLDQYIVRHPEYFFNRPPEAARINPENLIILVDHLKCASYELP 444
Query: 684 LSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIES 743
DE++ G + + YL + L S + Y + P+H IS+R+
Sbjct: 445 FR--EDEQFGGMDVEEILQ------YLHEEGVLHFSGNRY-YWSDQSFPAHGISLRSASQ 495
Query: 744 ERYEVIDMQSN----EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKA 799
E ++D QS+ ++ E++ A +++ A+Y+H+G Y V++L+ A ++
Sbjct: 496 ENVVIVD-QSDVANVRIIGEMDRFSAMTLLHDEAIYLHEGVQYQVEKLDYEHLKAYVKQV 554
Query: 800 DLKYFTKTRDYTDIHVSGGNNAYATKISK-DQLTKTTAQA-----LACTVTTTWFGFYRL 853
D++Y+T N A K+ + DQ T+ A + + T F RL
Sbjct: 555 DVEYYTD-----------ANLAVQLKVLEIDQTTEKEAVSVHYGDVTVNAMPTIFKKIRL 603
Query: 854 WRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPI 913
G I + ++LP+ + A W ++ ++ + E+ + L ++ L H+VP
Sbjct: 604 STGENI--GSGPIHLPEEEIHTSAAWFELREAERRFEEK--TLEQLLLGIANVLQHIVPA 659
Query: 914 YVRCNFSDL--APECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
+V C+ SD+ + H + + LYD +PGG G+SK+V
Sbjct: 660 FVMCDRSDIHVVSQIKAAHTGK---PTVFLYDHYPGGIGLSKEV 700
>gi|340521619|gb|EGR51853.1| predicted protein [Trichoderma reesei QM6a]
Length = 1626
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 257/734 (35%), Positives = 389/734 (52%), Gaps = 90/734 (12%)
Query: 253 ISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKAL 312
I++ Y+HQAE++ G+N+V++T TSSGKSL Y LPVL AL D +S ALY+FPTKAL
Sbjct: 870 ITQFYTHQAEALNRLHEGQNIVISTSTSSGKSLIYQLPVLHALEQDPNSRALYIFPTKAL 929
Query: 313 AQDQ---LRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPY 369
AQDQ LR +L+ + + + +DGDT R +R+ A+++ TNPDMLH++ILP
Sbjct: 930 AQDQKRSLRDILSYMPGLEHVL-VETFDGDTPMNIRNAIREEAKIIFTNPDMLHLTILPQ 988
Query: 370 HGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLC 429
++ L NL+ FVV+DE H Y G G H A I+RRL R+C
Sbjct: 989 EQRWRSFLKNLK-------------------FVVVDELHYYNGQLGSHVAFIMRRLRRIC 1029
Query: 430 SHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSV 489
+ V F+ +AT ANP EH + +S + LI DGSP +K F+ WN
Sbjct: 1030 AAVGNRHVQFISCSATVANPEEHFKLIFGVSDVSLIDYDGSPSGRKEFLCWN-------- 1081
Query: 490 LNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREIL 549
T + + A+ S E + LF ++ G+R IAFCR R CE + + ++ L
Sbjct: 1082 -----TPYKEPGDPASGRGSAKFECARLFCALLLRGVRIIAFCRVRAQCEALTNAIKQEL 1136
Query: 550 EETA-PHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHL 608
E P + + YR GY A DRR+IE + F GKL G+ AT ALELGID+G +D L
Sbjct: 1137 HELGRPECTNLVMGYRGGYTARDRRQIETEMFQGKLLGIVATTALELGIDIGSLDCVLTW 1196
Query: 609 GFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNH 668
GFP +IA+L QQ+GR+GRR + SL++ V P DQ++M P++LF P +D +
Sbjct: 1197 GFPYTIANLRQQSGRAGRRTKDSLSILVGDSFPTDQHYMNNPDELFSKPNCELRVDLDDM 1256
Query: 669 KVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGH 728
V E H+ CAA E P+ D ++FG L + + + A F H
Sbjct: 1257 LVREGHIQCAAYEMPIRQQEDMQFFGQDLPQ----------ICRERLVKDEAGFFHC--H 1304
Query: 729 EKM---PSHTISIRAIESERYEVIDMQS--NEVLEEIEESKAFFQVYEGAVYMHQGHTYL 783
++ P+ I+IR E + + +ID+ + NEVLEE+E S+A F +Y+GA+++HQG+TYL
Sbjct: 1305 DRFRPNPAQYIAIRDAEDDHFAIIDITNGRNEVLEELEASRATFTIYDGAIFLHQGNTYL 1364
Query: 784 VKELNLSSKIALCQKADLKYFTKTRDYTDIH---------VSGGN-NAYATKISKDQLTK 833
+++ +A ++ ++++ T +RDYTDI +SG + +AY I
Sbjct: 1365 IRDFLPDQSMAKVERVNVEWTTMSRDYTDIDPVEIEAIRMISGSSCHAYYGGIK------ 1418
Query: 834 TTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQ- 892
+ FGF+++ + G I D V++ P S+ +W+ +P V V++
Sbjct: 1419 ---------IQQNVFGFFKVDK-KGRIIDAVQVDNPPVVRYSKGMWLDIPGQVLEVLQDL 1468
Query: 893 NFSFRSGLHAASHALLHVVPIYVRCNFSDLAPEC-------PNPHDSRYFPERILLYDRH 945
+ + +HAA H ++ ++P +V D+ EC R P R+ YD
Sbjct: 1469 QLNAAAAIHAAEHVIMSLLPAFVISLPGDVRTECKVALKEFAKKETKRKRPARLTFYDAK 1528
Query: 946 PG--GTGVSKQVTD 957
G G+GVS + D
Sbjct: 1529 GGANGSGVSTKAFD 1542
>gi|302544271|ref|ZP_07296613.1| putative ATP-dependent RNA helicase [Streptomyces hygroscopicus
ATCC 53653]
gi|302461889|gb|EFL24982.1| putative ATP-dependent RNA helicase [Streptomyces himastatinicus
ATCC 53653]
Length = 831
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 258/767 (33%), Positives = 388/767 (50%), Gaps = 71/767 (9%)
Query: 203 PLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAE 262
P +++ L G G ++ H E + R + P + A+++ GI + ++HQA
Sbjct: 56 PRAVLDRLGTGAGRGARITHTEHLPPRLGSHADWPSPIRPEVIDAIRAAGIERPWTHQAR 115
Query: 263 SIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL---SHDLS---SSALYMFPTKALAQDQ 316
+ +L G++VVVAT T+SGKSL Y PVL L S + S ++ALY+ PTKALA DQ
Sbjct: 116 TAAHALRGESVVVATGTASGKSLAYLAPVLSTLLDGSEEPSGRGTTALYLSPTKALAADQ 175
Query: 317 LRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRI 376
RA+ +T + VYDGDT ++R W+R A ++TNPDMLH ILP H ++S
Sbjct: 176 RRAVADLTAPLGTGVRAAVYDGDTPVEEREWVRQYANYVLTNPDMLHRGILPGHPRWSSF 235
Query: 377 LSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSD 436
L LR +VVIDE H Y+G FG H A +LRRL R+C+ YGS
Sbjct: 236 LRALR-------------------YVVIDECHTYRGVFGSHVAQVLRRLRRVCAR-YGSS 275
Query: 437 PSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTD 496
P F+ ++ATSA+P L + + I D SP + +F LW P T+
Sbjct: 276 PVFLLASATSADPAVAATRLTGVP-VAAITEDSSPRGEVVFALWEP----------PLTE 324
Query: 497 MDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHL 556
+ + A + ++ +E + L ++ G+R + F RSR+ EL+ +E L E L
Sbjct: 325 LHGEQGAPVRRTA-TAESADLLTDLAVQGVRTVTFVRSRRGAELIALIAQERLAEVDRTL 383
Query: 557 VDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIAS 616
D + YR GY+ E+RR +ER G L G+AAT ALELG+D+ +D + G+PG+ AS
Sbjct: 384 PDRVAAYRGGYLPEERRALERALHSGDLLGLAATTALELGMDIAGLDAVVLAGYPGTRAS 443
Query: 617 LWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLV 676
LWQQAGR+GR + +LA+ VA + PLD Y + +P+ LF+ P+E +D N VL HL
Sbjct: 444 LWQQAGRAGRTGQGALAILVARDDPLDTYLVHHPDALFRQPVESTVLDPDNPYVLAPHLC 503
Query: 677 CAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTI 736
AA E PL+ D FG + L+ R L A + + E+ T
Sbjct: 504 AAAAELPLTEA-DLDLFGPATEELLPQLEQRKLLR------RRATAWHWTRRERAADLT- 555
Query: 737 SIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALC 796
IR +V++ + +L ++ S A V+EGAV++HQG +Y+V++L+L +AL
Sbjct: 556 DIRGEGGSPVQVVEAATGRLLGTVDASAAHTTVHEGAVHLHQGRSYIVRQLDLEDSVALV 615
Query: 797 QKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTT----AQALAC----TVTTTWF 848
++A Y T RD T I + L TT A C VT
Sbjct: 616 EEASPPYSTTARDTTAISI---------------LETTTEIPWGDARLCFGSVEVTNQVV 660
Query: 849 GFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQ-SVKAVVEQNFSFRSGLHAASHAL 907
F R +G + +L LP + ++AVW V + ++ + LHAA HA
Sbjct: 661 SFLRRKLITGEVLGETKLDLPPRTLRTRAVWWTVTEDQLEDARVHPQALGGALHAAEHAS 720
Query: 908 LHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
+ ++P++ C+ D+ H P + +YD HPGG G +++
Sbjct: 721 IGILPLFATCDRWDIGGVSVPLHPDTLLPT-VFVYDGHPGGAGFAER 766
>gi|172041530|ref|YP_001801244.1| helicase [Corynebacterium urealyticum DSM 7109]
gi|171852834|emb|CAQ05810.1| putative helicase [Corynebacterium urealyticum DSM 7109]
Length = 812
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 264/795 (33%), Positives = 409/795 (51%), Gaps = 68/795 (8%)
Query: 182 QSSTSSSHSFQRRCSDKSQLLP----LEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIP 237
QS+T +S + S + P E++E LR + + H+ + AR + + P
Sbjct: 4 QSTTPTSGAGSAPTSPGAGSAPNSLGAELIEDLRTAM-PNSTVTHIRHVPARLSTPADWP 62
Query: 238 DALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSH 297
+ +L + K L+ G+ K +SHQAE+ + G++V+VAT T+SGKSL Y LP+L AL+
Sbjct: 63 EWMLPSLKQTLRRGGVLKPWSHQAETAQHAWEGRDVIVATGTASGKSLGYQLPILTALAE 122
Query: 298 DLSSSALYMFPTKALAQDQLRALLAMTKAFD--ASIDIGVYDGDTTQKDRMWLRDNARLL 355
D +++A+Y+ PTKALAQDQ+++L + A A + + YDGDT + R +R+ AR++
Sbjct: 123 DPTATAVYLAPTKALAQDQMQSLARLCAATPELADVMVATYDGDTPPEARRAIREQARII 182
Query: 356 ITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFG 415
+TNPDMLH SIL +++R+L LR ++V+DE H Y+G FG
Sbjct: 183 VTNPDMLHASILGNPKRWTRLLKTLR-------------------YLVVDECHVYRGVFG 223
Query: 416 CHTALILRRLCRL---CSHVYG-----------SDPSFVFSTATSANPREHCMELANLST 461
H A++LRRL RL V G S P+ + ++ATS +P H L +
Sbjct: 224 AHVAMVLRRLLRLVPGAGSVAGPSSVASAECGTSGPTVIMASATSVDPAAHARRLTGRAE 283
Query: 462 LELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEM 521
+ + +DGSP ++ LW P L V + + R +AN SE + + A +
Sbjct: 284 VTAVTDDGSPAGERTIALWEP-GFLEGVEGEHGAPV---RRSAN------SEAAEVMARV 333
Query: 522 VQHGLRCIAFCRSRKLCELV-LSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFF 580
+ G R ++F RSR+ E+V L+ E+ + YRAGY EDRR +E+
Sbjct: 334 IAAGARTLSFVRSRRGAEIVALAAAEELGGMGRAEDAARVAAYRAGYTPEDRRYLEKALD 393
Query: 581 GGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEG 640
G+L GVAATNALELGIDVG +D + GFPG+IAS QQAGR+GRR + +L V V +
Sbjct: 394 EGELLGVAATNALELGIDVGGLDAVVAAGFPGTIASFRQQAGRAGRRGQGALVVLVGADD 453
Query: 641 PLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSG 700
P+D Y + +P L +E D N VL HLVCAA E LS + G ++
Sbjct: 454 PMDTYLIHHPSDLLDREVENTVFDPHNPYVLADHLVCAAAERALSDAEIAAWHGEAVAD- 512
Query: 701 ITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEI 760
L +RG L P +F + + +SIR + + +++ +S +L +
Sbjct: 513 --HLISRGVLRRRPH-----GVFADLQAAEQIHAQVSIRGGAAGQVAIVESESGRMLGTV 565
Query: 761 EESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNN 820
+E++A V+ GAVY+HQG TYLV +L+LS+ +A +A +Y T+ + TDI +
Sbjct: 566 DEARAVSDVHPGAVYVHQGETYLVDDLDLSAGVAWLHQASPEYSTRVKRDTDIQI----- 620
Query: 821 AYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWI 880
T+ ++ L V+ T GF + G G I D V L P ++AV
Sbjct: 621 -LRTRGTRQLADGVWLADLNVEVSHTVTGFTKRLPG-GEIIDNVPLDYPPERLRTRAVAY 678
Query: 881 QV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERI 939
V P + + ++ LHAA HA + ++P+ C+ D+ H P +
Sbjct: 679 TVAPDVLLDLGLPEPTWPGTLHAAEHAAIGLLPLIATCDRWDIGGVSIVQHPDTGLPT-V 737
Query: 940 LLYDRHPGGTGVSKQ 954
+YD + GG G +++
Sbjct: 738 FVYDGYTGGAGFAEK 752
>gi|444430705|ref|ZP_21225880.1| putative ATP-dependent helicase [Gordonia soli NBRC 108243]
gi|443888548|dbj|GAC67601.1| putative ATP-dependent helicase [Gordonia soli NBRC 108243]
Length = 775
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 257/744 (34%), Positives = 393/744 (52%), Gaps = 59/744 (7%)
Query: 218 GQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVAT 277
G + HV I +R A E PD + D + AL GI + + HQ E+ + +G++V ++T
Sbjct: 23 GPLTHVSVIPSRSATFAEWPDWVADEVRMALADNGIDRPWRHQVEAADLATSGQHVALST 82
Query: 278 MTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL---LAMTKAFDASIDIG 334
T+SGKSL Y LP+L AL +D +S+ALY+ PTKAL DQ+RA+ +A +AF+ +
Sbjct: 83 GTASGKSLAYQLPILTALINDPNSTALYLSPTKALGADQIRAVATTIAGRRAFN-HLQPC 141
Query: 335 VYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYL 394
YDGDT + R W R ++R + TNPDMLH+ IL H ++
Sbjct: 142 AYDGDTEPEIRQWARAHSRWIFTNPDMLHIGILSSHARWRHF------------------ 183
Query: 395 IFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCM 454
F +R++VIDE+H Y+G FG HTA++LRRL R+ S G +P+ + ++AT+A+P
Sbjct: 184 -FRHLRYIVIDESHHYRGVFGSHTAMVLRRLLRI-SRSAGGNPTVIAASATAADPAGALT 241
Query: 455 ELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEV 514
L + + + D SP ++ LW P L SV+ + N A S +E
Sbjct: 242 RLIGEPAVAVTE-DTSPRGERTVALWEP-DFLPSVVGE---------NGAPVRRSAGAES 290
Query: 515 SYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRR 574
+ L A+ V G R + F RSR+ E+ R +L TAP L+D + YRAGY+A+DRRR
Sbjct: 291 ARLLADFVIEGARTLCFLRSRRGVEITARNARALLAGTAPELMDRVAAYRAGYLADDRRR 350
Query: 575 IERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERP--SL 632
+ER G+L GVA TNALELG+D+ +D + G+PG++AS WQQAGR+GR+ SL
Sbjct: 351 LERAIADGELVGVATTNALELGVDISGLDAVIVGGYPGTVASFWQQAGRAGRQRDSGDSL 410
Query: 633 AVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKY 692
V VA + PLD Y + +P L +P+E D N +L HL+CAA E PL+ E++
Sbjct: 411 VVLVARDDPLDTYLVHHPAALLDTPVEATVTDPANPYILAPHLLCAASELPLTPAEVERW 470
Query: 693 FGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQ 752
+G + L G L K Y+ P I IR + ++D
Sbjct: 471 DAAG---AVDDLVAEGLL-------KRRKAGWYVAAGVEPHGDIDIRGGIGGQVLIVDQT 520
Query: 753 SNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTD 812
++ +L ++ +A V++GA+++HQG +Y+V EL+L +AL + + T R+ TD
Sbjct: 521 TSRLLGTVDAGRAMSTVHQGALHIHQGESYVVDELDLVDGLALAHPEEPDWTTSARETTD 580
Query: 813 IHVSGGNNAYATKISKDQLTKTTAQALA-CTVTTTWFGFYRLWRGSGIIFDTVELYLPKY 871
+ + T+I +Q AL VT G+ R SG + D VEL +P
Sbjct: 581 VTI--------TRILDEQRHGPLTTALVEVDVTHQVVGYLRTLI-SGEVLDAVELDMPPQ 631
Query: 872 SYESQAV-WIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPH 930
+ ++AV + P++++ V F LHAA HA + ++P+ C+ D+ N H
Sbjct: 632 TLSTRAVMYTLTPEALEGVGVTVGRFPGALHAAEHAAIGMMPLVATCDRWDIGGLSTNLH 691
Query: 931 DSRYFPERILLYDRHPGGTGVSKQ 954
P + +YD + GG G + +
Sbjct: 692 PDTGLPT-VFVYDGYMGGAGFADR 714
>gi|375008550|ref|YP_004982183.1| putative ATP-dependent helicase yprA [Geobacillus thermoleovorans
CCB_US3_UF5]
gi|359287399|gb|AEV19083.1| putative ATP-dependent helicase yprA [Geobacillus thermoleovorans
CCB_US3_UF5]
Length = 758
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 261/759 (34%), Positives = 398/759 (52%), Gaps = 74/759 (9%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E +E LR+ +VH +I ++A V PD L +ALK+ GI+ LY+HQA +
Sbjct: 8 EWIEQLRQ----DPNVVHWHEIEPKEASFVPFPDELDPRLGAALKARGIASLYTHQAAAY 63
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
A +G+N+V T T+SGK+LCYNLPVL+A++ + S ALY+FPTKALAQDQ L +
Sbjct: 64 DAVQSGRNIVAVTPTASGKTLCYNLPVLDAIAKEPSIRALYIFPTKALAQDQKNELNEII 123
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
SI YDGDT R +R ++ITNPDMLH +ILP+H ++ + L
Sbjct: 124 AEMGVSIYSHTYDGDTAPALRQKIRQAGHIVITNPDMLHTAILPHHTKWISLFEQL---- 179
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
R+VVIDE H Y+G FG H A ++RRL R+C+ YGS P+F+ ++A
Sbjct: 180 ---------------RYVVIDELHTYRGVFGSHVANVIRRLKRICA-FYGSRPTFICTSA 223
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T ANP+E L + LI N+G+P +K FV +NP R++ + R +A
Sbjct: 224 TIANPKELAERLIG-EPVALIDNNGAPRGRKYFVFYNPPVVERTM---------NIRQSA 273
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYR 564
KT+ ++ +++ + + I F RSR EL+LS+ + + E +I YR
Sbjct: 274 TKTAVELAR------QLLVNRIPTIVFARSRVRVELILSHLQAGVNERIGD--TTIRGYR 325
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
GY+ +RR IE+ G++ GV +TNALELG+D+G + + G+PG+IAS WQQAGR+
Sbjct: 326 GGYLPSERRAIEKGLRSGEIIGVVSTNALELGVDIGQLQACILTGYPGTIASTWQQAGRA 385
Query: 625 GRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
GRR+ SL V +A PLDQY + +PE F E I+ N +L H+ CAA E P
Sbjct: 386 GRRQGDSLVVMIASASPLDQYIISHPEYFFARSPEAARINPDNLLILVDHIKCAAYELPF 445
Query: 685 SLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESE 744
+ FG G+ + +L+ L+ A + ++ + P+H IS+R+ E
Sbjct: 446 R---RGETFG-----GVEVEEVLDFLAEQGVLNERAGRWHWMS-DAFPAHDISLRSAAQE 496
Query: 745 RYEVIDMQS---NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADL 801
+ID+ + V+ E++ A +++ A+Y+H+G Y V++L+ K A ++ D+
Sbjct: 497 NVVIIDISDTAHHRVIGEMDRFSAMTLLHDEAIYLHEGAQYQVEKLDWEEKKAYVRQVDV 556
Query: 802 KYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIF 861
+YFT + V + + + + +A+A + GSG I
Sbjct: 557 EYFTDANLAVRLDVLSEDRSETRGQMAVRYGDVSVRAMATIFKKLKLSTFENI-GSGPI- 614
Query: 862 DTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFS---FRSGLHAASHALLHVVPIYVRCN 918
LP+ + + A WI+ V FS F L ++ L H+VP++V C+
Sbjct: 615 -----RLPEETLHTSAAWIE-----WEAVPSRFSPALFEQLLVGIANVLGHLVPVFVMCD 664
Query: 919 FSDL--APECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
SDL P+ PH R I LYDR+PGG G+S+ V
Sbjct: 665 RSDLHVVPQLKAPHSGR---PTIFLYDRYPGGVGLSEAV 700
>gi|222444650|ref|ZP_03607165.1| hypothetical protein METSMIALI_00262 [Methanobrevibacter smithii
DSM 2375]
gi|222434215|gb|EEE41380.1| DEAD/DEAH box helicase [Methanobrevibacter smithii DSM 2375]
Length = 866
Score = 414 bits (1065), Expect = e-112, Method: Compositional matrix adjust.
Identities = 256/764 (33%), Positives = 403/764 (52%), Gaps = 73/764 (9%)
Query: 207 VEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMA 266
++ + + + ++ HVE I ARKA ++ D L LKS +KLY HQ+E+ A
Sbjct: 6 IDMFKNDVRYRDRIAHVETIPARKASYKKV-DNLNPKIVDYLKSKN-AKLYKHQSETYEA 63
Query: 267 SLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKA 326
+NV++ T T+SGK+L +NLP++E + D ++ALY++P KAL+ DQL L + K+
Sbjct: 64 IQNDENVIITTPTASGKTLAFNLPIMETMIEDEDATALYIYPAKALSNDQLHVLENLEKS 123
Query: 327 FDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFS 386
D I+ YDGDT + R +R +R+++TNP LH+ IL +H Q+ R SNL+
Sbjct: 124 LDIKINPNTYDGDTPKSKRYDIRQKSRIILTNPYQLHL-ILSWHHQWKRFYSNLK----- 177
Query: 387 LVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATS 446
F+VIDE+H YKG FG + A ++RRL R+ ++ YGS+P F+ S+AT
Sbjct: 178 --------------FIVIDESHYYKGIFGSNVAYLIRRLKRI-ANFYGSNPQFILSSATL 222
Query: 447 ANPREHCMELANLSTLE---LIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNA 503
ANP +ELAN T E L+ ND SP +K F+L+NP R R
Sbjct: 223 ANP----LELANRLTGEKFRLVDNDTSPSGEKDFILYNPFRNYR-------------RKK 265
Query: 504 ANKTSSPIS--EVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSIC 561
N +P E +F ++ ++ + F SRK+ EL+ + ++ ++ L I
Sbjct: 266 HNSEEAPSVHIETENIFVYLMLKDIQTLCFTVSRKITELIAMWAKKDMDNIKKKLTHRIT 325
Query: 562 VYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQA 621
YRAGY A++RR IE K GV TNALELGI++G +D + G+PG++ S WQQ+
Sbjct: 326 AYRAGYQADERREIEDGLKSRKYLGVTCTNALELGINIGSLDAVIISGYPGTMISTWQQS 385
Query: 622 GRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALE 681
GR+GR + SLA+ VAFE LDQYFM P+ F P E ID NH + E HL+CAA E
Sbjct: 386 GRAGRSNQKSLAILVAFENQLDQYFMNNPDFFFDKPHENVIIDLSNHILQEAHLLCAAKE 445
Query: 682 HPLSLIYDE--KYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIR 739
L+L DE YFG + L ++ L +P D I+ Y + P+ + S+
Sbjct: 446 --LTLKKDEAMDYFGVD-KEVLGKLVSKKDLYQNPRGDY---IYPY---DDNPAMSHSLD 496
Query: 740 AIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKA 799
+ ++ + V M + ++LE +E S+ + + +EGA+ +++G TY V +NL+S K
Sbjct: 497 QLSNDEFRV--MNNGKLLEVMERSQVYREAHEGAILINKGETYQVDSVNLASHFVNVSKN 554
Query: 800 DLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGI 859
+ Y T + I++ K+SK + TV ++ + ++
Sbjct: 555 TVDYHTMVLNKVHINIE-------KKLSKTKYGNLKIHFGELTVEEDYYRYKKMHFSK-- 605
Query: 860 IFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFS-----FRSGLHAASHALLHVVPIY 914
+ L LP + ++ +W VP+ VK +E + F GLH A HAL+ + P++
Sbjct: 606 VIGQFNLDLPPLKFRTKGLWFTVPREVKNNLEDLYKGEEEVFEGGLHGAEHALIGLFPLH 665
Query: 915 VRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDM 958
V C+ D+ N H+ + +YD + GG G++++ D+
Sbjct: 666 VMCDRFDIGGLSTNYHEDTQ-EATVFIYDAYEGGIGITQKAVDV 708
>gi|419710856|ref|ZP_14238320.1| DEAD-box ATP dependent DNA helicase [Mycobacterium abscessus M93]
gi|382939746|gb|EIC64072.1| DEAD-box ATP dependent DNA helicase [Mycobacterium abscessus M93]
Length = 769
Score = 414 bits (1065), Expect = e-112, Method: Compositional matrix adjust.
Identities = 255/737 (34%), Positives = 370/737 (50%), Gaps = 56/737 (7%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
H+ DI AR A + P + +A + G++ +SHQ + + AG++VVVAT T+S
Sbjct: 26 HICDIPARNAEVTSWPQWAHPDAIAAFAAQGVTAPWSHQVAAATLAFAGRHVVVATGTAS 85
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFD--ASIDIGVYDGD 339
GKS+ Y LP+L AL+ + + ALY+ PTKAL DQLRA+ + D + YDGD
Sbjct: 86 GKSVAYQLPILTALASEPRARALYLAPTKALGHDQLRAVRELITGVDNFERVQPCTYDGD 145
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
++ + R + R+++R + TNPDM+H+S+L H ++S L LR
Sbjct: 146 SSNELRRFARESSRWIFTNPDMIHVSLLHNHTRWSAFLRGLR------------------ 187
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
++V+DE H Y+G FG + ALIL+RL RLC YGS P+ VF++AT+ANP L
Sbjct: 188 -YLVVDECHYYRGVFGSNVALILQRLLRLCER-YGSHPTVVFASATTANPGAAAQALIGQ 245
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPIS-EVSYLF 518
E++ DGSP + LW P + T P+S E S L
Sbjct: 246 PVEEVVA-DGSPHGMRTVALWEPPL------------LPITGENGAPVRRPVSTETSRLL 292
Query: 519 AEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERD 578
A++VQ G R +AF RSR+ E+ L E P LV + YRAGY+ EDRR +E+
Sbjct: 293 ADLVQEGARTLAFVRSRRGAEMTALGAAHRLAEVDPGLVSQVAAYRAGYLPEDRRALEQA 352
Query: 579 FFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAF 638
G L G A TNALELG+D+ +D + GFPG++AS WQQAGRSGRR + SL V VA
Sbjct: 353 LSSGTLTGAATTNALELGVDIAGLDAVVVAGFPGTVASFWQQAGRSGRRGQGSLVVLVAR 412
Query: 639 EGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLS 698
+ PLD Y + +PE L PIE ID N VL HL+CAA E PL+ ++
Sbjct: 413 DDPLDTYLVHHPEALLDKPIEAVVIDPTNPHVLRPHLLCAATELPLT---EDDVRSLDAW 469
Query: 699 SGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLE 758
++ L + G L P +A P + IR + +++ + VL
Sbjct: 470 QVVSDLVDDGLLRKRPGGYFAAPGLN-------PYAAVDIRGSIGGQVMILEADTGRVLG 522
Query: 759 EIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGG 818
++ +A V+ GAVY+H G TY+V L+ IAL Y T R DI ++G
Sbjct: 523 TVDTGRAPATVHPGAVYLHSGETYVVDSLDFGDGIALVHNDRPDYSTFARSTIDIAITG- 581
Query: 819 NNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAV 878
+ + L + VT G+ R +G I D VEL +P + ++AV
Sbjct: 582 ------EGERIDLGDIQIGLVPVDVTHQVIGYLRKLT-TGEILDFVELDMPSSTLSTKAV 634
Query: 879 WIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPE 937
V P+++ + S LHAA HA + ++P+ C+ D+ P
Sbjct: 635 MYTVTPEALAGIDIDPLSTPGALHAAEHAAIGLLPLVASCDRGDIGGVSTALQPETGLPT 694
Query: 938 RILLYDRHPGGTGVSKQ 954
+ +YD HPGG G + +
Sbjct: 695 -VFVYDGHPGGAGFAAR 710
>gi|147918729|ref|YP_687548.1| ATP-dependent RNA helicase [Methanocella arvoryzae MRE50]
gi|110622944|emb|CAJ38222.1| ATP-dependent RNA helicase [Methanocella arvoryzae MRE50]
Length = 746
Score = 414 bits (1064), Expect = e-112, Method: Compositional matrix adjust.
Identities = 255/751 (33%), Positives = 405/751 (53%), Gaps = 66/751 (8%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E + +R +GQ+VH+E+I AR+ ++ L D ++ L I +LY+HQA++I
Sbjct: 6 EFIREIRASDDYEGQIVHLEEIDAREPQYDDVNHILDDRLRAYLDGEKI-RLYTHQAKAI 64
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
+L GKNV+V+T T+SGK+L +N+PV +AL D ++ALY++P KAL+ DQL+ L M
Sbjct: 65 DLALDGKNVIVSTPTASGKTLAFNIPVFQALLEDKRATALYLYPMKALSNDQLKTLRRMD 124
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
+A YDGDT Q R +RD +R++++NP +H L ++ ++ + S L+
Sbjct: 125 EALGTRAMPATYDGDTPQSARTTIRDKSRIIVSNPYAIH-RYLAWNDRWRKFFSGLK--- 180
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
+++IDEAH Y+G FG A++LRRL R+ YGSDP F+ S+A
Sbjct: 181 ----------------YIIIDEAHMYRGVFGSSVAMLLRRLLRV-LKRYGSDPQFILSSA 223
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T +NP EH +L ++ DGS +K FV WNP
Sbjct: 224 TISNPEEHSKKLTG-KDFTVVSRDGSGRGKKRFVFWNPPVI------------------G 264
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYR 564
N+ +S E + L + + HGL+ + F +SR++ EL+ + R+ E + + I YR
Sbjct: 265 NQRASTHQETAGLITKQLDHGLQTLCFTKSRRMAELIAMWARD--RENGLYR-NEIMPYR 321
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
AGY+ EDRR+IE D G+L V +TNALE+GID+G +D + G+PG+ S WQQAGR+
Sbjct: 322 AGYLPEDRRKIEDDLKNGRLRAVTSTNALEVGIDIGSLDSVIISGYPGTRISTWQQAGRA 381
Query: 625 GRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
GR +L VAF+ P+DQ++MK+P++ F E I+ N +L HL+CA+ E PL
Sbjct: 382 GRGRDDALITLVAFDDPIDQFYMKHPDRFFGGKSEEAIINLHNPYILMGHLICASAEMPL 441
Query: 685 SLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESE 744
+ D YFG +S I + + G L + P + + Y G K PS +S+ I S
Sbjct: 442 T-ANDSLYFGD-ISDIIEAMASSGLLRNTP------RGYVY-GGAKSPSEIVSLNNISSR 492
Query: 745 RYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYF 804
VI VLE +E ++A + +EGAV +HQG TYL++ L+L+ +A ++ ++ Y+
Sbjct: 493 AVNVI--CDGRVLETLEVARACSEAHEGAVLLHQGETYLIESLDLNLGVAKARRQNVDYY 550
Query: 805 TKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTV 864
T+ +D+ + ++ S + T TVT ++ Y + R ++
Sbjct: 551 TEALKLSDVRIK-------SERSHKTVNGITVSVGDVTVTEQYYE-YAVRRYEKLV-GYF 601
Query: 865 ELYLPKYSYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLA 923
L LP +ES AVW + P+ + ++EQ F G+HA H ++ + P+Y C+ DL
Sbjct: 602 PLDLPPQVFESVAVWFTLSPKYQEQLLEQGKDFDGGIHAVEHGMIAMAPVYALCDRWDLG 661
Query: 924 PECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
H P I +YD + GG G++++
Sbjct: 662 GLSTPLHPDTGMPT-IFVYDGYEGGIGIAEK 691
>gi|365868453|ref|ZP_09408004.1| DEAD-box ATP dependent DNA helicase [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|421047292|ref|ZP_15510290.1| putative helicase [Mycobacterium massiliense CCUG 48898 = JCM
15300]
gi|364000544|gb|EHM21742.1| DEAD-box ATP dependent DNA helicase [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|392243844|gb|EIV69327.1| putative helicase [Mycobacterium massiliense CCUG 48898]
Length = 769
Score = 414 bits (1064), Expect = e-112, Method: Compositional matrix adjust.
Identities = 255/742 (34%), Positives = 375/742 (50%), Gaps = 66/742 (8%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
H+ DI AR A + P + +A + G++ +SHQ + + G++VVVAT T+S
Sbjct: 26 HICDIPARNAKVTSWPQWAHSDAIAAFAAQGVTAPWSHQVAAATLAFTGRHVVVATGTAS 85
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFD--ASIDIGVYDGD 339
GKS+ Y LP+L AL+ + + ALY+ PTKAL DQLRA+ + D + YDGD
Sbjct: 86 GKSVAYQLPILTALASEPRARALYLAPTKALGHDQLRAVRELITGVDNFERVQPCTYDGD 145
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
++ + R + R+++R + TNPDM+H+S+L H ++S L LR
Sbjct: 146 SSNELRRFARESSRWIFTNPDMIHVSLLHNHTRWSAFLRGLR------------------ 187
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
++V+DE H Y+G FG + AL+L+RL RLC YG+ P+ VF++AT+ANP L
Sbjct: 188 -YLVVDECHYYRGVFGSNVALVLQRLLRLCER-YGAHPTVVFASATTANPGAAAQALIGQ 245
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
E+I DGSP + LW P L + + N A +E S L A
Sbjct: 246 PVEEVIA-DGSPHGMRTVALWEPP--LLPITGE---------NGAPVRRPVSTETSRLLA 293
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDF 579
++VQ G R +AF RSR+ E+ L E P LV + YRAGY+ EDRR +E+
Sbjct: 294 DLVQEGARTLAFVRSRRGAEMTALGAAHRLAEVDPGLVSQVAAYRAGYLPEDRRALEQAL 353
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFE 639
G L G A TNALELG+D+ +D + GFPG++AS WQQAGRSGRR + SL V VA +
Sbjct: 354 SSGTLTGAATTNALELGVDIAGLDAVVVAGFPGTVASFWQQAGRSGRRGQGSLVVLVARD 413
Query: 640 GPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSG--- 696
PLD Y + +PE L PIE ID N VL HL+CAA E PL+ D + +G
Sbjct: 414 DPLDTYLVHHPEALLDKPIEAVVIDPTNPHVLRPHLLCAATELPLTE-DDVRSLDAGQVV 472
Query: 697 ---LSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQS 753
+ G+ + GY ++ P L+ P + IR + +++ +
Sbjct: 473 SDLVDDGLLRKRPGGYFAA-PGLN--------------PYAAVDIRGSIGGQVMILEADT 517
Query: 754 NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDI 813
VL ++ +A V+ GAVY+H G TY+V L+ IAL Y T R DI
Sbjct: 518 GRVLGTVDTGRAPATVHPGAVYLHSGETYVVDSLDFGDGIALVHNDRPDYSTFARSTIDI 577
Query: 814 HVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSY 873
++G + + L + VT G+ R +G I D VEL +P +
Sbjct: 578 AITG-------EGERIDLGDIQIGLVPVDVTHRVIGYLRKLT-TGEILDFVELDMPSSTL 629
Query: 874 ESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDS 932
++AV V P+++ + S LHAA HA + ++P+ C+ +D+
Sbjct: 630 STKAVMYTVTPEALADIDIDPLSTPGALHAAEHAAIGLLPLVASCDRADIGGVSTALQPE 689
Query: 933 RYFPERILLYDRHPGGTGVSKQ 954
P + +YD HPGG G + +
Sbjct: 690 TGLPT-VFVYDGHPGGAGFAAR 710
>gi|239827287|ref|YP_002949911.1| DEAD/DEAH box helicase [Geobacillus sp. WCH70]
gi|239807580|gb|ACS24645.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. WCH70]
Length = 752
Score = 414 bits (1064), Expect = e-112, Method: Compositional matrix adjust.
Identities = 257/762 (33%), Positives = 402/762 (52%), Gaps = 78/762 (10%)
Query: 204 LEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAES 263
E++E LR + +V+ +I ++A V +P+ L ++AL+ GI+ LY+HQA +
Sbjct: 7 FELIEQLR----NDPNVVYWHEIEPQEANTVPMPEHLDLRLRTALEKRGIASLYTHQAAA 62
Query: 264 IMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAM 323
A GKN+V T T+SGK+LCYNLPVL+A++ + S ALY+FPTKALAQDQ L +
Sbjct: 63 YEAVQNGKNIVAVTPTASGKTLCYNLPVLQAIAENEHSRALYLFPTKALAQDQKSELHEI 122
Query: 324 TKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLI 383
+ I YDGDT R +R +++TNPDMLH +ILP+H ++ + NL
Sbjct: 123 IEEMGVPIHSYTYDGDTAPGIRQKIRKAGHIVMTNPDMLHSAILPHHTKWVALFENL--- 179
Query: 384 AFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFST 443
R+VVIDE H Y+G FG H A ++RRL R+C YGS P F+ ++
Sbjct: 180 ----------------RYVVIDELHTYRGVFGSHVANVIRRLKRICQ-FYGSKPIFICTS 222
Query: 444 ATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNA 503
AT ANP+E L + LI N+G+P +K FV +NP + +
Sbjct: 223 ATIANPKELAERLTG-EPMTLIDNNGAPRGRKHFVFYNPPVVHQPL-------------- 267
Query: 504 ANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVY 563
N S EV+ L + +++G++ I F RSR EL+LS+ +E++++ +I Y
Sbjct: 268 -NIRKSATVEVNRLAKQFLENGIQTIVFARSRVRVELILSHLQELIKDQLG--AKTIRGY 324
Query: 564 RAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGR 623
R GY+ ++RR IE+ G++ GV +TNALELG+D+G + V + G+PG++AS WQQAGR
Sbjct: 325 RGGYLPKERREIEKGLRSGEIIGVVSTNALELGVDIGQLQVCIMTGYPGTVASTWQQAGR 384
Query: 624 SGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHP 683
+GRR SL + VA P+DQY +++PE F E I+ N +L HL CAA E P
Sbjct: 385 AGRRHGDSLVIMVASSSPIDQYIVQHPEYFFGRSPETARINPDNMLILVDHLKCAAYELP 444
Query: 684 LSLIYDEKYFGSGLSSGITTLKN-RGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIE 742
F G G ++ +L+ L A + ++ + P+H IS+R+
Sbjct: 445 ---------FRQGEKFGDLEVEEVLEFLTEQKVLHYRAGKWYWMS-DAFPAHDISLRSAS 494
Query: 743 SERYEVIDMQ---SNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKA 799
E +ID+ ++ V+ E++ A ++E A+Y+H+G Y V++L+ K A ++
Sbjct: 495 QENVVIIDISKTGNHRVIGEMDRFSAMTLLHEEAIYLHEGVQYQVEKLDWEEKKAYVREV 554
Query: 800 DLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWR---- 855
+++YFT +HV + + + QL ++ T F +L
Sbjct: 555 NVEYFTDANLAVQLHVLEED-----RNEQRQLLSLHYGDVSVRAKATIFKKIKLSTFENI 609
Query: 856 GSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYV 915
GSG I +LP+ + A WI++ + + + L S+ L H+VP++V
Sbjct: 610 GSGPI------HLPEEELHTTATWIELGEELSKM--DAPMLEQALVGISNVLRHLVPMFV 661
Query: 916 RCNFSDL--APECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
C+ +D+ P+ PH I LYDR+PGG G+S+ V
Sbjct: 662 MCDRTDIHVVPQMKAPHSGM---PTIFLYDRYPGGIGLSEAV 700
>gi|157692722|ref|YP_001487184.1| ATP-dependent helicase [Bacillus pumilus SAFR-032]
gi|157681480|gb|ABV62624.1| possible ATP-dependent helicase [Bacillus pumilus SAFR-032]
Length = 748
Score = 414 bits (1064), Expect = e-112, Method: Compositional matrix adjust.
Identities = 258/764 (33%), Positives = 406/764 (53%), Gaps = 84/764 (10%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E++E L+K Q+ H +I A+ A +P + + K AL+ G+S+LY HQ E+
Sbjct: 8 ELIEELKK----DEQVEHWHEIEAKPAQTSPLPKRVNEKLKKALEKRGVSELYIHQKEAF 63
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
+ ++VV T T+SGK+LCYNLPVL+++ D +S +LY+FPTKALAQDQ L +
Sbjct: 64 ERVMDAEHVVTVTPTASGKTLCYNLPVLQSIVEDQTSRSLYLFPTKALAQDQKSELNEII 123
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
D I YDGDT+ R +R ++ITNPDMLH +ILP+H ++ + NL
Sbjct: 124 HEMDVPIHSETYDGDTSPAIRQRVRQAGHIVITNPDMLHSAILPHHTKWVSLFENL---- 179
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
+++VIDE H Y+G FG H A ++RRL R+C+ YGSDP F+ ++A
Sbjct: 180 ---------------KYIVIDELHTYRGVFGSHVANVIRRLKRICA-FYGSDPIFICTSA 223
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T ANP+E +L S + LI+ +G+P +K FV +NP V+NK
Sbjct: 224 TIANPKELAQQLTG-SKMHLIERNGAPSGKKNFVFYNP-----PVVNK----------PL 267
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREIL-EETAPHLVDSICVY 563
N S + V+ L ++ ++ I F RSR E++LS+ +E++ +E P SI Y
Sbjct: 268 NIRQSAATVVNQLAKTFLKEKIQTIVFARSRVRVEVILSHIQELVKKEIGP---KSIRGY 324
Query: 564 RAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGR 623
R GY+ ++RR IE+ G + GV +TNALELG+D+G + V + G+PGS+AS WQQAGR
Sbjct: 325 RGGYLPKERRVIEKGLREGDILGVVSTNALELGVDIGQLKVCIMTGYPGSVASTWQQAGR 384
Query: 624 SGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHP 683
+GRR +L + VA PLDQY +++PE F P E I+ +N +L HL CA+ E P
Sbjct: 385 AGRRHEEALIIMVASSSPLDQYIVRHPEYFFNRPPEAARINPENLIILVDHLKCASYELP 444
Query: 684 LSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIES 743
+++ FG I YL + L S + Y + P+H IS+R+
Sbjct: 445 FR---EDEQFGDMDVEEILQ-----YLHEEGVLHFSGNRY-YWSDQSFPAHGISLRSASQ 495
Query: 744 ERYEVIDMQSN----EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKA 799
E ++D QS+ ++ E++ A +++ A+Y+H+G Y V++L+ A ++
Sbjct: 496 ENVVIVD-QSDVANVRIIGEMDRFSAMTLLHDEAIYLHEGVQYQVEKLDYEHLKAYVKQV 554
Query: 800 DLKYFTKTRDYTDIHVSGGNNAYATKISK-DQLTKTTAQA-----LACTVTTTWFGFYRL 853
D++Y+T N A K+ + DQ T+ A + + T F RL
Sbjct: 555 DVEYYTD-----------ANLAVQLKVLEIDQTTEKEAVSVHFGDVTVNAMPTIFKKIRL 603
Query: 854 WRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPI 913
G I + ++LP+ + A W ++ ++ + E+ + L ++ L H+VP
Sbjct: 604 STGENI--GSGPIHLPEEEIHTSAAWFELHEAERRFEEK--TLEQLLLGIANVLQHIVPA 659
Query: 914 YVRCNFSDL--APECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
+V C+ SD+ + H + + LYD +PGG G+SK+V
Sbjct: 660 FVMCDRSDIHVVSQIKAAHTGK---PTVFLYDHYPGGIGLSKEV 700
>gi|366994670|ref|XP_003677099.1| hypothetical protein NCAS_0F02600 [Naumovozyma castellii CBS 4309]
gi|342302967|emb|CCC70744.1| hypothetical protein NCAS_0F02600 [Naumovozyma castellii CBS 4309]
Length = 1061
Score = 414 bits (1063), Expect = e-112, Method: Compositional matrix adjust.
Identities = 263/770 (34%), Positives = 392/770 (50%), Gaps = 78/770 (10%)
Query: 206 MVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIM 265
M+E L+K Q+ I R A E D D + + + Y HQA +I
Sbjct: 240 MIEKLKKIDTYYDQIKEHYTIPERTA---EYGDLDFDLSPEVYPALEHDRFYVHQATAIN 296
Query: 266 ASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTK 325
A AGKNV++ T TSSGKSL Y L ++ L D S+ +Y+FPTKALAQDQ RA ++
Sbjct: 297 AIHAGKNVIITTSTSSGKSLIYQLSAIDILLRDPESTFMYIFPTKALAQDQRRAFESIIS 356
Query: 326 AFDASIDIGV--YDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLI 383
D+ V YDGDT + R +R NAR++ TNPDM+H SILP H + L NL++
Sbjct: 357 KIPELSDVSVATYDGDTEKLQRASIRRNARVIFTNPDMIHASILPNHINWKHFLYNLKI- 415
Query: 384 AFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDP-SFVFS 442
VV+DE H Y+G FG + AL++RRL RLC Y +D F+
Sbjct: 416 ------------------VVVDELHVYRGLFGSNVALVMRRLLRLCKCYYNNDNLRFISC 457
Query: 443 TATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRN 502
+AT +P EH + + + LI DGSP K V+WNP VL + +
Sbjct: 458 SATLRSPIEHMKNMFGIDDVLLINEDGSPRGSKHLVIWNP-----PVLAQHE-------- 504
Query: 503 AANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEE-TAPHLVDSIC 561
K + I E + E+V +R IAFC R++CEL++ R IL+E L+ +
Sbjct: 505 --RKRENFIHESAKCLVELVLQNVRTIAFCYVRRVCELLMKDVRNILQELNREDLLVDVM 562
Query: 562 VYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQA 621
YR GY A DRR+IER+ F G L V +TNALELGID+G +D L GFP S+A+ QQ+
Sbjct: 563 SYRGGYSASDRRKIEREMFHGNLKAVISTNALELGIDIGGLDAVLMCGFPLSMANFHQQS 622
Query: 622 GRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCH----IDAQNHKVLEQHLVC 677
GR+GRR R SL + VA + P+DQ+++ +P L + +D N +LE H+ C
Sbjct: 623 GRAGRRNRDSLTLVVASDNPVDQHYVAHPSILLHGDDSESYQDLVLDFDNLLILEGHIQC 682
Query: 678 AALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKM---PSH 734
AA E P+ + D+ +F I + L +A+ Y H + PS
Sbjct: 683 AAFELPIVIERDQIFFKREHLEKICRER----------LQHNAE--GYHAHNRFLPWPSK 730
Query: 735 TISIRAIESERYEVIDMQS--NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSK 792
+S+R +E +RY VID+ + N V+EEIE S+ F +Y+G +++HQG+ YLVKE N +
Sbjct: 731 HVSLRGVEEDRYAVIDITNGRNIVIEEIEASRTSFTLYDGGIFIHQGYPYLVKEFNSDER 790
Query: 793 IALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYR 852
A Q+ D+ + T RD+TD+ + + + FG+++
Sbjct: 791 YATVQRVDVDWVTNQRDFTDV-----DPQLIEMVRSLDDSDIPVYFGKIRTKIVVFGYFK 845
Query: 853 LWRGSGIIFDTVELYLPKYSYESQAVWIQVP-QSVKAVVEQNFSFRSGLHAASHALLHVV 911
+ + II D VE + S+ +WI +P ++++ + + +HAA HA++ +
Sbjct: 846 IDKFKRII-DAVETNNQPVIFYSKGLWIDIPARALELCTSKELNIAGAIHAAQHAIMGLF 904
Query: 912 PIYVRCNFSDLAPECPNP-------HDSRYFPERILLYDRHPG--GTGVS 952
P ++ ++ EC P R P R++ YD G G+G+S
Sbjct: 905 PRFIITGVDEVQTECKAPEKEFAERQTQRIRPARLIFYDSKGGEYGSGLS 954
>gi|418418656|ref|ZP_12991841.1| DEAD-box ATP dependent DNA helicase [Mycobacterium abscessus subsp.
bolletii BD]
gi|364001829|gb|EHM23021.1| DEAD-box ATP dependent DNA helicase [Mycobacterium abscessus subsp.
bolletii BD]
Length = 769
Score = 414 bits (1063), Expect = e-112, Method: Compositional matrix adjust.
Identities = 257/743 (34%), Positives = 376/743 (50%), Gaps = 68/743 (9%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
H+ DI AR A + P + +A + G++ +SHQA + + AG++VVVAT T+S
Sbjct: 26 HICDIPARNAEVTNWPQWAHSDAIAAFAAQGVTAPWSHQAAAATLAFAGRHVVVATGTAS 85
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFD--ASIDIGVYDGD 339
GKS+ Y LP+L AL+ + + ALY+ PTKAL DQLR++ + D + YDGD
Sbjct: 86 GKSVAYQLPILTALASEPRARALYLAPTKALGHDQLRSVRELITGIDNFERVQPCTYDGD 145
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
++ + R + R+++R + TNPDM+H+S+L H ++S L LR
Sbjct: 146 SSNELRRFARESSRWIFTNPDMMHVSLLHNHTRWSAFLRGLR------------------ 187
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
++V+DE H Y+G FG + AL+L+RL RLC YGS P+ VF++AT+ANP L
Sbjct: 188 -YLVVDECHYYRGVFGSNVALVLQRLLRLCER-YGSHPTVVFASATTANPGAAAQALIGQ 245
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPIS-EVSYLF 518
E++ DGSP + LW P + T P+S E S L
Sbjct: 246 PVEEVVA-DGSPHGMRTVALWEPPL------------LPITGENGAPVRRPVSTETSRLL 292
Query: 519 AEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERD 578
A++VQ G R +AF RSR+ E+ L E P LV + YRAGY+ EDRR +E+
Sbjct: 293 ADLVQEGARTLAFVRSRRGAEMTALGAAHRLAEVDPGLVSQVAAYRAGYLPEDRRALEQA 352
Query: 579 FFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAF 638
G L G A TNALELG+D+ +D + GFPG++AS WQQAGRSGRR + SL V VA
Sbjct: 353 LSSGMLTGAATTNALELGVDIAGLDAVVVAGFPGTVASFWQQAGRSGRRGQGSLVVLVAR 412
Query: 639 EGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSG-- 696
+ PLD Y + +PE L PIE ID N VL HL+CAA E PL+ D + +G
Sbjct: 413 DDPLDTYLVHHPEALLDKPIEAVVIDPTNPHVLRPHLLCAATELPLTE-DDVRSLDAGQV 471
Query: 697 ----LSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQ 752
+ G+ + GY ++ P L+ P + IR + +++
Sbjct: 472 VSDLVDDGLLRQRPGGYFAA-PGLN--------------PYAAVDIRGSIGGQIMILEAD 516
Query: 753 SNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTD 812
+ VL ++ +A V+ GAVY+H G TY+V L+ IAL Y T R D
Sbjct: 517 TGRVLGTVDTGRAPATVHPGAVYLHSGETYVVDSLDFGDGIALVHNDRPDYSTFARSTID 576
Query: 813 IHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYS 872
I ++G + + L + VT G+ R +G I D VEL +P +
Sbjct: 577 IAITG-------EGERIDLGDIQIGLVPVDVTHQVIGYLRKLT-TGEILDFVELDMPSST 628
Query: 873 YESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHD 931
++AV V P+++ + S LHAA HA + ++P+ C+ SD+
Sbjct: 629 LSTKAVMYTVTPEALAGIDIDPLSTPGALHAAEHAAIGLLPLVASCDRSDIGGVSTALQP 688
Query: 932 SRYFPERILLYDRHPGGTGVSKQ 954
P + +YD HPGG G + +
Sbjct: 689 ETGLPT-VFVYDGHPGGAGFAAR 710
>gi|453070707|ref|ZP_21973940.1| ATP-dependent helicase [Rhodococcus qingshengii BKS 20-40]
gi|452760567|gb|EME18898.1| ATP-dependent helicase [Rhodococcus qingshengii BKS 20-40]
Length = 762
Score = 414 bits (1063), Expect = e-112, Method: Compositional matrix adjust.
Identities = 252/744 (33%), Positives = 394/744 (52%), Gaps = 55/744 (7%)
Query: 215 GSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVV 274
GS+ ++ + AR A E P+ + + AL + L+ HQ+E+ + AGK+VV
Sbjct: 12 GSEKPLMFTAQLPARVAEFTEWPEWVHPSVVRALAEHSVRSLWIHQSEAADLAYAGKHVV 71
Query: 275 VATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDA---SI 331
VAT T+SGKSL Y LPVL A++ D ++ALY+ PTKAL DQLRA+L++T FD S
Sbjct: 72 VATGTASGKSLAYQLPVLTAMATDPLATALYLSPTKALGSDQLRAVLSLTD-FDVELRST 130
Query: 332 DIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTE 391
+ YDGDT+Q+ R W R+N+R L TNPDM+H+S+L H +++ NL+
Sbjct: 131 NASAYDGDTSQELRTWARENSRWLFTNPDMIHISLLRTHQRWAHFFRNLK---------- 180
Query: 392 VYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPRE 451
+V+IDE H+Y+G FG + AL++RRL R+ + YG++P+F+ ++AT+A+P
Sbjct: 181 ---------YVIIDECHSYRGVFGSNVALVIRRLRRIAA-RYGAEPTFILASATTADPGA 230
Query: 452 HCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPI 511
L E + DGSP + LW P L ++ ++ + + R A
Sbjct: 231 AASRLIGAHCTE-VTEDGSPHGPRTVALWEP-PLLEALTGENGSPV---RRPAG------ 279
Query: 512 SEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAED 571
+E + + A+++ G R + F RSR+ EL T+ +L E P L + + YRAGY+AED
Sbjct: 280 AEAARIMADLMIEGARTLTFVRSRRGAELTAMATKRLLAEVDPDLAERVASYRAGYLAED 339
Query: 572 RRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPS 631
RR +E G L G A TNALELG+D+ +D + GFPG++AS WQQAGRSGRR S
Sbjct: 340 RRELEAALADGTLLGAATTNALELGVDIAGLDAVVVAGFPGTVASFWQQAGRSGRRGEGS 399
Query: 632 LAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEK 691
L V +A + PLD Y + +P + P+E D N VL L+CAA+E PLS D +
Sbjct: 400 LVVLIARDDPLDTYLVHHPSAVLDKPVEATVTDPGNPYVLGPQLLCAAMELPLS---DAE 456
Query: 692 YFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDM 751
G +T L G + K ++ + P ++ IR + ++D
Sbjct: 457 VDAFGALEVLTRLSEEGKIRRR-------KHGWFVTADSNPHGSLDIRGGIGTQVAIVDG 509
Query: 752 QSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYT 811
+S +L ++ +A V+ GAV++HQG TY+V EL+L +AL + + T R+ T
Sbjct: 510 ESGRMLGTVDAGRAPATVHPGAVHIHQGETYVVDELDLDVGLALVHTENPDWTTSARETT 569
Query: 812 DIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKY 871
+I ++ ++ + VT G+ R SG + D++EL +P +
Sbjct: 570 EITIT-------EQLEHKNYGDIAVALVQVEVTHQVVGYLRRLT-SGEVLDSIELDMPAH 621
Query: 872 SYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPH 930
+ ++AV V P+ ++++ F LHAA HA + ++P+ C+ D+ H
Sbjct: 622 TLPTRAVMYTVTPELLESIGVPPERFPGSLHAAEHAAIGLLPLVAICDRGDIGGVSTAMH 681
Query: 931 DSRYFPERILLYDRHPGGTGVSKQ 954
P + +YD H GG G + +
Sbjct: 682 ADTGLPT-VFVYDGHAGGAGFADR 704
>gi|354614749|ref|ZP_09032587.1| helicase/secretion neighborhood putative DEAH-box helicase
[Saccharomonospora paurometabolica YIM 90007]
gi|353220902|gb|EHB85302.1| helicase/secretion neighborhood putative DEAH-box helicase
[Saccharomonospora paurometabolica YIM 90007]
Length = 817
Score = 414 bits (1063), Expect = e-112, Method: Compositional matrix adjust.
Identities = 256/750 (34%), Positives = 384/750 (51%), Gaps = 61/750 (8%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+ HV D+ AR+ + P+ D AL + G+ +L++HQAE+ + +G+NVVVAT T
Sbjct: 33 VTHVADLEAREPRFADWPEWAPDGVVRALTARGVPRLWTHQAEAASLARSGRNVVVATGT 92
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAM---TKAFDASIDIGVY 336
+SGKS Y LPVL L+ D ++ALY+ PTKAL DQLR++ T+A D Y
Sbjct: 93 ASGKSAAYQLPVLSTLATDPKATALYLAPTKALGADQLRSVAGTDLGTEAHDPRP--AAY 150
Query: 337 DGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIF 396
DGDT Q +R W+RD+AR + +NPDMLH +LP H +++R F
Sbjct: 151 DGDTPQSERRWVRDHARWVFSNPDMLHKGVLPAHARWARF-------------------F 191
Query: 397 LFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMEL 456
+ +VV+DE H Y+G FG H AL+LRRL R+ + YG+DP FV ++AT+A P L
Sbjct: 192 RGLSYVVVDECHGYRGVFGSHVALLLRRLRRIARY-YGADPVFVLASATTAEPAAFASRL 250
Query: 457 ANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSY 516
+ + DGSP + LW P D N A S +E +
Sbjct: 251 VGADCVA-VTGDGSPRGARTVALWEP----------PLLDGQAGENEAPVRRSAGAEAAR 299
Query: 517 LFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIE 576
+ AE+V R +AF RSR+ EL IL ET P L + YRAGY+ E+RR +E
Sbjct: 300 ILAELVIEKARTLAFVRSRRGAELTALGAERILAETDPELRGLVAAYRAGYLPEERRELE 359
Query: 577 RDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYV 636
G+L GVA TNALELG+D+ +D + G+PG++AS WQQ+GR+GR +L V+V
Sbjct: 360 SALLSGRLLGVATTNALELGVDISGLDAVVLAGYPGTLASFWQQSGRAGRSGDDALVVFV 419
Query: 637 AFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSG 696
A + PLD Y + +P+ L P+E +D N VL HL CAA E L+ +++ G+
Sbjct: 420 ARDDPLDTYLVHHPDALLDRPVEAAVLDPTNPYVLGPHLACAAAERALTARELDEFGGAA 479
Query: 697 LSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEV 756
+ + L +D L + + E+ P H + +R ++ V++ ++ +
Sbjct: 480 ARAVLDD------LVADRLLRRRRSGWYWTDRER-PHHAVDLRGSGGDQVAVVESDTSRL 532
Query: 757 LEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVS 816
L ++ + A V+ GAVY+H+G +Y+V EL+L +AL D ++ T R+ DI V
Sbjct: 533 LGTVDAAAACGTVHPGAVYLHRGASYVVDELDLDQGLALVHAEDPEWNTSAREVIDITV- 591
Query: 817 GGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQ 876
T+ S D T V++ G+ R SG + D V L LP+ ++
Sbjct: 592 -----LRTERSVDH-GGVTVHLGEVAVSSRVVGYLRRLP-SGEVLDHVPLDLPEQELRTR 644
Query: 877 AVWIQV------PQSVKAVVEQNFS---FRSGLHAASHALLHVVPIYVRCNFSDLAPECP 927
AVW V P +A LHAA HA + ++P++ C+ +D+
Sbjct: 645 AVWYTVDEDLLCPGPGRAPEGAGLEPARVPGALHAAEHAAIGLLPLFASCDRADIGGVST 704
Query: 928 NPHDSRYFPERILLYDRHPGGTGVSKQVTD 957
H P + ++D HPGG G + + D
Sbjct: 705 AVHADTGKPT-VFVHDGHPGGAGFADRGFD 733
>gi|448824447|ref|YP_007417619.1| putative helicase [Corynebacterium urealyticum DSM 7111]
gi|448277944|gb|AGE37368.1| putative helicase [Corynebacterium urealyticum DSM 7111]
Length = 812
Score = 414 bits (1063), Expect = e-112, Method: Compositional matrix adjust.
Identities = 263/795 (33%), Positives = 409/795 (51%), Gaps = 68/795 (8%)
Query: 182 QSSTSSSHSFQRRCSDKSQLLP----LEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIP 237
QS+T +S + S + P E++E LR + + + + AR + + P
Sbjct: 4 QSTTPTSGAGSAPTSPGAGSAPNSLGAELIEDLRTAM-PNSTVTLIRHVPARLSTPADWP 62
Query: 238 DALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSH 297
+ +L + K L+ G+ K +SHQAE+ + G++V+VAT T+SGKSL Y LP+L AL+
Sbjct: 63 EWMLPSLKQTLRRGGVLKPWSHQAETAQHAWEGRDVIVATGTASGKSLGYQLPILTALAE 122
Query: 298 DLSSSALYMFPTKALAQDQLRALLAMTKAFD--ASIDIGVYDGDTTQKDRMWLRDNARLL 355
D +++A+Y+ PTKALAQDQ+++L + A A + + YDGDT + R +R+ AR++
Sbjct: 123 DPTATAVYLAPTKALAQDQMQSLARLCAATPELADVMVATYDGDTPPEARRAIREQARII 182
Query: 356 ITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFG 415
+TNPDMLH SIL +++R+L LR ++V+DE H Y+G FG
Sbjct: 183 VTNPDMLHASILGNPKRWTRLLKTLR-------------------YLVVDECHVYRGVFG 223
Query: 416 CHTALILRRLCRL---CSHVYG-----------SDPSFVFSTATSANPREHCMELANLST 461
H A++LRRL RL V G S P+ + ++ATS +P H L +
Sbjct: 224 AHVAMVLRRLLRLVPGAGSVAGPSSVASAECGTSGPTVIMASATSVDPAAHARRLTGRAE 283
Query: 462 LELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEM 521
+ + +DGSP ++ LW P L V + + R +AN SE + + A +
Sbjct: 284 VTAVTDDGSPAGERTIALWEP-GFLEGVEGEHGAPV---RRSAN------SEAAEVMARV 333
Query: 522 VQHGLRCIAFCRSRKLCELV-LSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFF 580
+ G R ++F RSR+ E+V L+ E+ + YRAGY EDRR +E+
Sbjct: 334 IAEGARTLSFVRSRRGAEIVALAAAEELGGMGRAEDAARVAAYRAGYTPEDRRYLEKALD 393
Query: 581 GGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEG 640
G+L GVAATNALELGIDVG +D + GFPG+IAS QQAGR+GRR + +L V V +
Sbjct: 394 EGELLGVAATNALELGIDVGGLDAVVAAGFPGTIASFRQQAGRAGRRGQGALVVLVGADD 453
Query: 641 PLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSG 700
P+D Y + +P L +E D N VL HLVCAA E LS + G ++
Sbjct: 454 PMDTYLIHHPSDLLDREVENTVFDPHNPYVLADHLVCAAAERALSDAEIAAWHGEAVAD- 512
Query: 701 ITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEI 760
L +RG L P +F + + +SIR + + +++ +S +L +
Sbjct: 513 --HLISRGVLRRRPH-----GVFADLQAAEQIHAQVSIRGGAAGQVAIVESESGRMLGTV 565
Query: 761 EESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNN 820
+E++A V+ GAVY+HQG TYLV +L+LS+ +A +A +Y T+ + TDI +
Sbjct: 566 DEARAVSDVHPGAVYVHQGETYLVDDLDLSAGVAWLHQASPEYSTRVKRDTDIQI----- 620
Query: 821 AYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWI 880
T+ ++ L V+ T GF + G G I D V L P ++AV
Sbjct: 621 -LRTRGTRQLADGVWLADLNVEVSHTVTGFTKRLPG-GEIIDNVPLDYPPERLRTRAVAY 678
Query: 881 QV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERI 939
V P ++ + ++ LHAA HA + ++P+ C+ D+ H P +
Sbjct: 679 TVAPDALLDLGLPEPTWPGTLHAAEHAAIGLLPLIATCDRWDIGGVSIVQHPDTGLPT-V 737
Query: 940 LLYDRHPGGTGVSKQ 954
+YD + GG G +++
Sbjct: 738 FVYDGYTGGAGFAEK 752
>gi|417970570|ref|ZP_12611502.1| DEAD/DEAH box helicase [Corynebacterium glutamicum S9114]
gi|344045229|gb|EGV40902.1| DEAD/DEAH box helicase [Corynebacterium glutamicum S9114]
Length = 785
Score = 413 bits (1062), Expect = e-112, Method: Compositional matrix adjust.
Identities = 252/749 (33%), Positives = 393/749 (52%), Gaps = 55/749 (7%)
Query: 216 SQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVV 275
S+ + H+ + A KA V+ P + + + AL + GI+KL+SHQA++ + G++VVV
Sbjct: 18 SESTLTHMVTLPASKAKYVDWPSWVPASLRDALVNRGINKLFSHQAQTAHLAWNGQHVVV 77
Query: 276 ATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDA--SIDI 333
AT TSSGKSL Y LP+L AL D ++ ALY+ PTKAL DQL + + + I+
Sbjct: 78 ATGTSSGKSLGYQLPILSALGTDPTACALYLTPTKALGSDQLTSTSTLLRDIPDFHPINP 137
Query: 334 GVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVY 393
YDGDT + R +RD +R + TNPDM+H SIL H +++R+L +L+
Sbjct: 138 APYDGDTPSEARSGIRDLSRFVFTNPDMVHASILANHPRWARLLRHLK------------ 185
Query: 394 LIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHC 453
F+VIDE HAY+G FG + +++LRRL RL + YGS P+ + ++ATS++P H
Sbjct: 186 -------FIVIDECHAYRGVFGANVSMVLRRLLRLAA-FYGSHPTVILASATSSDPEIHA 237
Query: 454 MELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISE 513
L + ++ + DG+P ++ +LW P + + N A + +E
Sbjct: 238 SRLLG-APVKAVTEDGAPTGERTVLLWEP----------GFIEGAEGENGAPVRRAASTE 286
Query: 514 VSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETA-PHLVDSICVYRAGYVAEDR 572
+ + A ++ G R + F RSR+ E+V +E L P + YRAGY+AEDR
Sbjct: 287 AANIMATLISEGARTLTFVRSRRQAEIVALRAQEELSTLGRPDFARRVASYRAGYLAEDR 346
Query: 573 RRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSL 632
RR+ER G L GVA+TNALELGIDVG +D + GFPG++AS WQQAGR+GRR + SL
Sbjct: 347 RRLERLLDDGTLLGVASTNALELGIDVGGLDAVVTAGFPGTVASFWQQAGRAGRRGQGSL 406
Query: 633 AVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKY 692
V VA + P+D Y + +P L + P+E D N V+ H+ CAA+E PL+ + +
Sbjct: 407 VVLVARDEPMDTYLVHHPAALLEKPVEAAVFDPTNPHVIRGHVYCAAVEKPLTEV-EVAA 465
Query: 693 FGSGLS------SGITTLKNRGYLSSD-PSLDSSAKIFEYIGHEKMPSHTISIRAIESER 745
FG+ G+ + RG+ + + P + + H++ +S+R
Sbjct: 466 FGAQKVVEKLEIEGLLRKRPRGWFAVEKPMSEDPDALSPDSAHQQ-----VSLRGGSGSE 520
Query: 746 YEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFT 805
+ ++D+ +L I+ +KA Q + GAVY+HQG ++++ EL+L +AL + Y T
Sbjct: 521 FMIVDISDGRLLGTIDSAKAMSQTHPGAVYLHQGESFVIDELDLEENLALARPELPDYTT 580
Query: 806 KTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFY-RLWRGSGIIFDTV 864
R TDI ++ +A D + VT G+ RL G D
Sbjct: 581 YARSDTDIRIT---SAPLEDEVFDAGGGLWVANVEVQVTDRVTGYVTRL--SDGTTLDAT 635
Query: 865 ELYLPKYSYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLA 923
LYLP +++AV + P +++A+ LHAA HA + ++P+ C+ D+
Sbjct: 636 PLYLPPQILQTRAVAYTIDPLALEAMGIPATDIPGALHAAEHAAIGMLPLLATCDRWDIG 695
Query: 924 PECPNPHDSRYFPERILLYDRHPGGTGVS 952
H +P + +YD GG G +
Sbjct: 696 GVSTALHADTGYPT-VFVYDGMDGGAGFA 723
>gi|449547600|gb|EMD38568.1| hypothetical protein CERSUDRAFT_82843 [Ceriporiopsis subvermispora
B]
Length = 1071
Score = 413 bits (1062), Expect = e-112, Method: Compositional matrix adjust.
Identities = 276/831 (33%), Positives = 425/831 (51%), Gaps = 82/831 (9%)
Query: 73 PKVVQFANDDMESKNHDDS---IVIINVSTEERDKVEDNLGSGQKAISLSKIFNAMKKRE 129
P FA S DD +++++ R K N G G + + AMK+
Sbjct: 138 PDFAAFATSGASSSKLDDQAEHVLVLDFMENSRGKKSTNQGFGY-TLPPALTPAAMKRLV 196
Query: 130 RSFKTNLWEAVNLLMCKLQKRVMSLSVEDLLTYVKERRTDVRGNEVKRARRSQSSTSSSH 189
+ +A+N L+ ++ ED + ++ D + + +SS
Sbjct: 197 ERRNSRFVDAINELLEATRQG------EDPVALLQAAARD----HIPINPSGSPAPTSSK 246
Query: 190 SFQRRCSDKSQLLPLEMV-EHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSAL 248
QR ++ V + L + Q Q+ AR+ + L D + AL
Sbjct: 247 GKQREVPSPEDRPTIDAVMQELLQETWYQDQLTSRRIFDARQGRTASLEVPLSDEIQQAL 306
Query: 249 K-STGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMF 307
S I LY HQ +I A GK+V+V+T T+SGKS+ Y +PVL+AL D S+A++++
Sbjct: 307 SASRKIMSLYIHQVAAIDALAQGKSVIVSTSTASGKSVIYQVPVLKALQEDHQSTAMFIY 366
Query: 308 PTKALAQDQLRALLAMTKAFDASIDIGV--YDGDTTQKDRMWLRDNARLLITNPDMLHMS 365
PTKALAQDQ AL + + I V YDGDT Q+ R +R+NA ++ TN DMLH S
Sbjct: 367 PTKALAQDQRIALEQLLYSCPGLEHIKVYNYDGDTAQELRAGIRENASVIFTNFDMLHTS 426
Query: 366 ILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRL 425
ILP+ + R L NL+++A +DE H Y FG H A ++RR
Sbjct: 427 ILPHEDLWRRFLKNLKIVA-------------------VDELHYYSNIFGSHVAQVMRRF 467
Query: 426 CRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSC 485
R+C+ V FV +AT + P +H + + + + DG+P +K F++WNP
Sbjct: 468 RRVCAAVGNRRICFVSCSATISKPGQHMKHIFGIEDVYEVTEDGAPSGRKDFLVWNPP-- 525
Query: 486 LRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYT 545
+ D +A+ S +SE + L ++ G+R I FC+ RK+CEL +
Sbjct: 526 -----------LKDPMDASLGRMSSMSEATRLMRYLMTRGVRVILFCKIRKVCELAMRTL 574
Query: 546 R-EILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDV 604
R E+ E ++D + YR GY +DRRRIE++ F G L G+ ATNALELG+D+G +D
Sbjct: 575 RAELTAEGRLDILDRVMAYRGGYSQQDRRRIEKEAFTGNLLGIVATNALELGVDIGVLDA 634
Query: 605 TLHLGFP-GSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHI 663
+ LGFP G IAS QQAGR+GRR R +LAV++ P+DQ+++ P+ LF +
Sbjct: 635 VIMLGFPMGGIASFRQQAGRAGRRARDALAVFIPDPFPIDQHYVNNPDDLFDQATNDLMV 694
Query: 664 DAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIF 723
D ++ +LE HL CAA E PL++ DEKYFG L+ GI + L D K
Sbjct: 695 DLESKVILEAHLQCAAHEMPLTM-EDEKYFGP-LTKGICETR----LVKD-------KDG 741
Query: 724 EYIGHEK---MPSHTISIRAIESERYEVIDMQ-------SNEVLEEIEESKAFFQVYEGA 773
Y H K P+ I++R + E+Y V+D+ + ++LEE+E S+A F++YEGA
Sbjct: 742 WYHAHPKYLPFPAKHIALRGADEEKYSVVDISKLDRAGGTAQILEEVELSRALFEIYEGA 801
Query: 774 VYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTK 833
V++HQG T+LVKE++ SK A + D+ + T+ RD+T+I + A +I + +
Sbjct: 802 VFIHQGITFLVKEVSHDSKTAKVIRTDVNWITQPRDFTNI-----DAAQTYRIRALRESP 856
Query: 834 TTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQ 884
A + T +G+++L R II D ++L P + +S +WI VP+
Sbjct: 857 HHAYYGRVELKTVVYGYFKL-RNRAII-DAIDLETPPWERDSTGMWIDVPK 905
>gi|15678520|ref|NP_275635.1| EIF-4a family ATP-dependent RNA helicase [Methanothermobacter
thermautotrophicus str. Delta H]
gi|2621563|gb|AAB84998.1| ATP-dependent RNA helicase, eIF-4A family [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 822
Score = 413 bits (1062), Expect = e-112, Method: Compositional matrix adjust.
Identities = 263/742 (35%), Positives = 401/742 (54%), Gaps = 81/742 (10%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
HVE I R+A + D + DN + L + GI +LY HQ E++ A G N+++ T T+S
Sbjct: 21 HVETIPGREARYSDSTD-IPDNIRDYLDAGGI-RLYRHQREALDAIREGMNILITTPTAS 78
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTT 341
GK+L +NLP++E L+ + ++ALY++P KAL++DQL L + ++ YDGDT
Sbjct: 79 GKTLAFNLPIMETLTLNPDATALYIYPVKALSRDQLGVLEELESELGLKLNPSTYDGDTP 138
Query: 342 QKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRF 401
++ R W+R+N+R+++TNP LH ILP+H Q+ R SNLR +
Sbjct: 139 RERRPWIRENSRVILTNPHQLH-RILPWHHQWRRFYSNLR-------------------Y 178
Query: 402 VVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLST 461
VVIDEAH Y+G FG + AL+LRRL R+C + YGS+P FV ++AT ANP E +L L
Sbjct: 179 VVIDEAHQYRGVFGSNVALLLRRLRRICRY-YGSEPQFVLASATLANPAEFSRKLTGLD- 236
Query: 462 LELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPIS--EVSYLFA 519
+I +D SP K F+L+NP K P + E S + +
Sbjct: 237 FRVISDDTSPSGPKHFILYNPY---------------------RKRGDPSAHLETSAILS 275
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDF 579
+V G++ + F SRK+ ELV +TRE L+ LVD + YRAGY+AE RRRIE D
Sbjct: 276 YLVLRGVQTLCFTISRKMAELVTRWTREQLDRENRKLVDRVTSYRAGYLAEQRRRIEADL 335
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFE 639
G+L GV ATNALELGID+G +D + G+PG++ S WQQAGR+GR + S+ + VAFE
Sbjct: 336 KEGRLLGVTATNALELGIDIGSLDAVIISGYPGTMISTWQQAGRAGRNLKDSMVILVAFE 395
Query: 640 GPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSS 699
PLDQY MK P +F+ P E ID QN +L CAA E PL L + + S
Sbjct: 396 NPLDQYIMKNPSFIFERPHENAIIDLQNRLILRNQTACAASELPLIL---DDFLEYDFSV 452
Query: 700 GITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEE 759
G+ G + +D L+ + G P + + + + VI VLE
Sbjct: 453 GVA-----GEMLADGELELAPDGLTCSGD---PQFRYGLDDVSQDTFTVI--CEGRVLET 502
Query: 760 IEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGN 819
+ S+A+ + +EGAV M+ G+TY V++ +L + + + D++Y T T++ +
Sbjct: 503 MSRSQAYREAHEGAVLMNHGNTYTVRDFDLEGRRIIVDRRDVEYHTSVLRDTELRI---- 558
Query: 820 NAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVW 879
K+ + +L VT + G YR+ S ++ EL LP + ++A+W
Sbjct: 559 ---IRKLRQRRLGDLEVNFGEVEVTEHYTG-YRVMSYSRVL-GKRELDLPPLRFRTRALW 613
Query: 880 IQVPQSVKAVVEQNF---SFRSGLHAASHALLHVVPIYVRCNFSDLA----PECPNPHDS 932
+P S++ VE+ + +F G+H A AL+ + P++V C+ SD+ P P+ ++
Sbjct: 614 FTIPDSLRDEVEEMYGGDAFHGGIHGAEDALISLFPLHVLCDRSDIGGISTPMHPDTQEA 673
Query: 933 RYFPERILLYDRHPGGTGVSKQ 954
F +YD GG G++++
Sbjct: 674 TIF-----IYDGFEGGIGLAEK 690
>gi|397678485|ref|YP_006520020.1| ATP-dependent helicase yprA [Mycobacterium massiliense str. GO 06]
gi|418252019|ref|ZP_12878054.1| DEAD-box ATP dependent DNA helicase [Mycobacterium abscessus 47J26]
gi|420934619|ref|ZP_15397892.1| putative helicase [Mycobacterium massiliense 1S-151-0930]
gi|420935509|ref|ZP_15398779.1| putative helicase [Mycobacterium massiliense 1S-152-0914]
gi|420939927|ref|ZP_15403194.1| putative helicase [Mycobacterium massiliense 1S-153-0915]
gi|420950125|ref|ZP_15413372.1| putative helicase [Mycobacterium massiliense 2B-0626]
gi|420959113|ref|ZP_15422347.1| putative helicase [Mycobacterium massiliense 2B-0107]
gi|420960134|ref|ZP_15423365.1| putative helicase [Mycobacterium massiliense 2B-1231]
gi|420995044|ref|ZP_15458190.1| putative helicase [Mycobacterium massiliense 2B-0307]
gi|420996010|ref|ZP_15459153.1| putative helicase [Mycobacterium massiliense 2B-0912-R]
gi|421000527|ref|ZP_15463660.1| putative helicase [Mycobacterium massiliense 2B-0912-S]
gi|353448437|gb|EHB96841.1| DEAD-box ATP dependent DNA helicase [Mycobacterium abscessus 47J26]
gi|392133031|gb|EIU58776.1| putative helicase [Mycobacterium massiliense 1S-151-0930]
gi|392147016|gb|EIU72737.1| putative helicase [Mycobacterium massiliense 1S-152-0914]
gi|392156789|gb|EIU82487.1| putative helicase [Mycobacterium massiliense 1S-153-0915]
gi|392165211|gb|EIU90898.1| putative helicase [Mycobacterium massiliense 2B-0626]
gi|392181146|gb|EIV06798.1| putative helicase [Mycobacterium massiliense 2B-0307]
gi|392191830|gb|EIV17455.1| putative helicase [Mycobacterium massiliense 2B-0912-R]
gi|392202681|gb|EIV28277.1| putative helicase [Mycobacterium massiliense 2B-0912-S]
gi|392248839|gb|EIV74315.1| putative helicase [Mycobacterium massiliense 2B-0107]
gi|392257346|gb|EIV82800.1| putative helicase [Mycobacterium massiliense 2B-1231]
gi|395456750|gb|AFN62413.1| putative ATP-dependent helicase yprA [Mycobacterium massiliense
str. GO 06]
Length = 769
Score = 413 bits (1062), Expect = e-112, Method: Compositional matrix adjust.
Identities = 253/743 (34%), Positives = 374/743 (50%), Gaps = 68/743 (9%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
H+ DI AR A + P + +A + G++ +SHQ + + G++VVVAT T+S
Sbjct: 26 HICDIPARNAEVTSWPQWAHSDAIAAFAAQGVTAPWSHQVAAATLAFTGRHVVVATGTAS 85
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFD--ASIDIGVYDGD 339
GKS+ Y LP+L AL+ + + ALY+ PTKAL DQLRA+ + D + YDGD
Sbjct: 86 GKSVAYQLPILTALASEPRARALYLAPTKALGHDQLRAVRELITGVDNFERVQPCTYDGD 145
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
++ + R + R+++R + TNPDM+H+S+L H ++S L LR
Sbjct: 146 SSNELRRFARESSRWIFTNPDMIHVSLLHNHTRWSAFLRGLR------------------ 187
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
++V+DE H Y+G FG + AL+L+RL RLC YG+ P+ VF++AT+ANP L
Sbjct: 188 -YLVVDECHYYRGVFGSNVALVLQRLLRLCER-YGAHPTVVFASATTANPGAAAQALIGQ 245
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPIS-EVSYLF 518
E++ DGSP + LW P + T P+S E S L
Sbjct: 246 PVEEVVA-DGSPHGMRTVALWEPPL------------LPITGENGAPVRRPVSTETSRLL 292
Query: 519 AEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERD 578
A++VQ G R +AF RSR+ E+ L E P LV + YRAGY+ EDRR +E+
Sbjct: 293 ADLVQEGARTLAFVRSRRGAEMTALGAAHRLAEVDPGLVSQVAAYRAGYLPEDRRALEQA 352
Query: 579 FFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAF 638
G L G A TNALELG+D+ +D + GFPG++AS WQQAGRSGRR + SL V VA
Sbjct: 353 LSSGTLTGAATTNALELGVDIAGLDAVVVAGFPGTVASFWQQAGRSGRRGQGSLVVLVAR 412
Query: 639 EGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSG-- 696
+ PLD Y + +PE L PIE ID N VL HL+CAA E PL+ D + +G
Sbjct: 413 DDPLDTYLVHHPEALLDKPIEAVVIDPTNPHVLRPHLLCAATELPLTE-DDVRSLDAGQV 471
Query: 697 ----LSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQ 752
+ G+ + GY ++ P L+ P + IR + +++
Sbjct: 472 VSDLVDDGLLRKRPGGYFAA-PGLN--------------PYAAVDIRGSIGGQVMILEAD 516
Query: 753 SNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTD 812
+ VL ++ +A V+ GAVY+H G TY++ L+ IAL Y T R D
Sbjct: 517 TGRVLGTVDTGRAPATVHPGAVYLHSGETYVIDSLDFGDGIALVHNDRPDYSTFARSTID 576
Query: 813 IHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYS 872
I ++G + + L + VT G+ R +G I D VEL +P +
Sbjct: 577 IAITG-------EGERIDLVDIQIGLVPVDVTHRVIGYLRKLT-TGEILDFVELDMPSST 628
Query: 873 YESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHD 931
++AV V P+++ + S LHAA HA + ++P+ C+ +D+
Sbjct: 629 LSTKAVMYTVTPEALADIDIDPLSTPGALHAAEHAAIGLLPLVASCDRADIGGVSTALQP 688
Query: 932 SRYFPERILLYDRHPGGTGVSKQ 954
P + +YD HPGG G + +
Sbjct: 689 ETGLPT-VFVYDGHPGGAGFAAR 710
>gi|294495420|ref|YP_003541913.1| DEAD/DEAH box helicase [Methanohalophilus mahii DSM 5219]
gi|292666419|gb|ADE36268.1| DEAD/DEAH box helicase domain protein [Methanohalophilus mahii DSM
5219]
Length = 929
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 255/751 (33%), Positives = 389/751 (51%), Gaps = 63/751 (8%)
Query: 215 GSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVV 274
G +GQ+VH E I R + L + AL GI KLYSHQAE+I +GK++V
Sbjct: 15 GYEGQIVHSESIKVRHGKYDNVNIKPL--LRFALHERGIKKLYSHQAEAIEKIRSGKDIV 72
Query: 275 VATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIG 334
+AT T+SGKSL Y +PV E + S+ LY+ P ALA DQ + + +IDI
Sbjct: 73 LATSTASGKSLAYTIPVFEEIMDHPDSTVLYISPLNALANDQHSNFVKLRDVLGENIDIA 132
Query: 335 VYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYL 394
+ G +++++R ++ +A ++ TNP+MLHMS+L + Q+ R+LSNL
Sbjct: 133 RFVGSSSKEERWQVKADANIIFTNPEMLHMSVLGWKQQWYRVLSNL-------------- 178
Query: 395 IFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCM 454
+++++DE+H Y G G + A +LRRL R+C H YGS P ++ +AT NP +H
Sbjct: 179 -----KYIILDESHYYTGVTGSNMANLLRRLQRICEH-YGSSPQYICCSATIGNPGKHAS 232
Query: 455 ELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEV 514
+L +E+I+ DGS + FV WNP + NK + S ++
Sbjct: 233 DLTG-KKVEVIERDGSGRGAQKFVFWNPP----AYYNKKGYFL---------RKSSFADS 278
Query: 515 SYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRR 574
+ LF ++Q GL+ I F RSR+ E + ++ L+ L +SI YR GY EDR
Sbjct: 279 NRLFTTLIQEGLQTILFTRSRQKMERMYLQSKNELQNRG--LKESIAPYRGGYSPEDRIL 336
Query: 575 IERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAV 634
IE+ G L GV +TNALELGID+G +D + GFPG+I S QQAGR+GR + S+ V
Sbjct: 337 IEKQLKNGTLKGVLSTNALELGIDIGGLDGCILDGFPGTIMSTLQQAGRAGRGDNESMVV 396
Query: 635 YVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFG 694
VA + LDQY+M+ PEK F E I+ +N + H++CAA E PL D+KYFG
Sbjct: 397 LVAGQDALDQYYMRNPEKFFAKSCEDAVINPENTYIQTGHILCAAKELPLQQ-EDKKYFG 455
Query: 695 SGLSSGITTLKNRGYLSSDPS----LDSSAKIFEYIGHEKMPSHTISIRAIESERYEVID 750
SG+ + LK L+ + +DS P ++IR Y +ID
Sbjct: 456 SGMQDVVDILKEEKLLAENEKGTICIDSH------------PHGQVNIRGAGKNGYSLID 503
Query: 751 MQSNE---VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKT 807
+ + +++E S AF + +EGA+Y+H G+ Y+V+++N S K L +K Y+TK
Sbjct: 504 TTGGKRKIIEKDLERSMAFREAFEGAIYIHMGNPYVVQKMNHSKKEILVEKGKADYYTKP 563
Query: 808 RDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELY 867
++I + Y K +L T V GF R+ GS E+
Sbjct: 564 MVASEIFL---REKYEEK-KPGKLDDITVGLGRVEVVEQVTGFRRIRHGSNEEMGRKEIE 619
Query: 868 LPKYSYESQAVWIQVPQSVKAVV-EQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPEC 926
+P S E++++WI +P + +V +Q F GLHA HA++ + P+++ + +D+
Sbjct: 620 MPPSSLETESLWIDLPAGYEEMVNKQKRDFAGGLHAIEHAMIAMYPVHLLADRNDVGGVS 679
Query: 927 PNPHDSRYFPERILLYDRHPGGTGVSKQVTD 957
H I +YD H GG G ++ D
Sbjct: 680 TPSHGDLEGRSGIFIYDGHEGGVGFAENGFD 710
>gi|420945561|ref|ZP_15408814.1| putative helicase [Mycobacterium massiliense 1S-154-0310]
gi|392158769|gb|EIU84465.1| putative helicase [Mycobacterium massiliense 1S-154-0310]
Length = 777
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 253/743 (34%), Positives = 374/743 (50%), Gaps = 68/743 (9%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
H+ DI AR A + P + +A + G++ +SHQ + + G++VVVAT T+S
Sbjct: 34 HICDIPARNAEVTSWPQWAHSDAIAAFAAQGVTAPWSHQVAAATLAFTGRHVVVATGTAS 93
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFD--ASIDIGVYDGD 339
GKS+ Y LP+L AL+ + + ALY+ PTKAL DQLRA+ + D + YDGD
Sbjct: 94 GKSVAYQLPILTALASEPRARALYLAPTKALGHDQLRAVRELITGVDNFERVQPCTYDGD 153
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
++ + R + R+++R + TNPDM+H+S+L H ++S L LR
Sbjct: 154 SSNELRRFARESSRWIFTNPDMIHVSLLHNHTRWSAFLRGLR------------------ 195
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
++V+DE H Y+G FG + AL+L+RL RLC YG+ P+ VF++AT+ANP L
Sbjct: 196 -YLVVDECHYYRGVFGSNVALVLQRLLRLCER-YGAHPTVVFASATTANPGAAAQALIGQ 253
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPIS-EVSYLF 518
E++ DGSP + LW P + T P+S E S L
Sbjct: 254 PVEEVVA-DGSPHGMRTVALWEPPL------------LPITGENGAPVRRPVSTETSRLL 300
Query: 519 AEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERD 578
A++VQ G R +AF RSR+ E+ L E P LV + YRAGY+ EDRR +E+
Sbjct: 301 ADLVQEGARTLAFVRSRRGAEMTALGAAHRLAEVDPGLVSQVAAYRAGYLPEDRRALEQA 360
Query: 579 FFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAF 638
G L G A TNALELG+D+ +D + GFPG++AS WQQAGRSGRR + SL V VA
Sbjct: 361 LSSGTLTGAATTNALELGVDIAGLDAVVVAGFPGTVASFWQQAGRSGRRGQGSLVVLVAR 420
Query: 639 EGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSG-- 696
+ PLD Y + +PE L PIE ID N VL HL+CAA E PL+ D + +G
Sbjct: 421 DDPLDTYLVHHPEALLDKPIEAVVIDPTNPHVLRPHLLCAATELPLTE-DDVRSLDAGQV 479
Query: 697 ----LSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQ 752
+ G+ + GY ++ P L+ P + IR + +++
Sbjct: 480 VSDLVDDGLLRKRPGGYFAA-PGLN--------------PYAAVDIRGSIGGQVMILEAD 524
Query: 753 SNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTD 812
+ VL ++ +A V+ GAVY+H G TY++ L+ IAL Y T R D
Sbjct: 525 TGRVLGTVDTGRAPATVHPGAVYLHSGETYVIDSLDFGDGIALVHNDRPDYSTFARSTID 584
Query: 813 IHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYS 872
I ++G + + L + VT G+ R +G I D VEL +P +
Sbjct: 585 IAITG-------EGERIDLVDIQIGLVPVDVTHRVIGYLRKLT-TGEILDFVELDMPSST 636
Query: 873 YESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHD 931
++AV V P+++ + S LHAA HA + ++P+ C+ +D+
Sbjct: 637 LSTKAVMYTVTPEALADIDIDPLSTPGALHAAEHAAIGLLPLVASCDRADIGGVSTALQP 696
Query: 932 SRYFPERILLYDRHPGGTGVSKQ 954
P + +YD HPGG G + +
Sbjct: 697 ETGLPT-VFVYDGHPGGAGFAAR 718
>gi|261350810|ref|ZP_05976227.1| ATP-dependent RNA helicase, DEAD/DEAH box family
[Methanobrevibacter smithii DSM 2374]
gi|288860428|gb|EFC92726.1| ATP-dependent RNA helicase, DEAD/DEAH box family
[Methanobrevibacter smithii DSM 2374]
Length = 866
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 255/764 (33%), Positives = 403/764 (52%), Gaps = 73/764 (9%)
Query: 207 VEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMA 266
++ + + + ++ HVE I ARKA ++ D L LKS +KLY HQ+E+ A
Sbjct: 6 IDMFKNDVRYRDRIAHVETIPARKASYKKV-DNLNPKIVDYLKSKN-AKLYKHQSETYEA 63
Query: 267 SLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKA 326
+NV++ T T+SGK+L +NLP++E + D ++ALY++P KAL+ DQL L + K+
Sbjct: 64 IQNDENVIITTPTASGKTLAFNLPIMETMIEDEDATALYIYPAKALSNDQLHVLENLEKS 123
Query: 327 FDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFS 386
D I+ YDGDT + R +R +R+++TNP LH+ IL +H Q+ R SNL+
Sbjct: 124 LDIKINPNTYDGDTPKSKRYDIRQKSRIILTNPYQLHL-ILSWHHQWKRFYSNLK----- 177
Query: 387 LVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATS 446
F+VIDE+H YKG FG + A ++RRL R+ ++ YG++P F+ S+AT
Sbjct: 178 --------------FIVIDESHYYKGIFGSNVAYLIRRLKRI-ANFYGANPQFILSSATL 222
Query: 447 ANPREHCMELANLSTLE---LIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNA 503
ANP +ELAN T E L+ ND SP +K F+L+NP R R
Sbjct: 223 ANP----LELANRLTGEKFRLVDNDTSPSGEKDFILYNPFRNYR-------------RKK 265
Query: 504 ANKTSSPIS--EVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSIC 561
N +P E +F ++ ++ + F SRK+ EL+ + ++ ++ L I
Sbjct: 266 HNSEEAPSVHIETESIFVYLMLKDIQTLCFTVSRKITELIAMWAKKDMDNIKKKLTHRIT 325
Query: 562 VYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQA 621
YRAGY A++RR IE K GV TNALELGI++G +D + G+PG++ S WQQ+
Sbjct: 326 AYRAGYQADERREIEDGLKSRKYLGVTCTNALELGINIGSLDAVIISGYPGTMISTWQQS 385
Query: 622 GRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALE 681
GR+GR + SLA+ VAFE LDQYFM P+ F P E ID NH + E HL+CAA E
Sbjct: 386 GRAGRSNQKSLAILVAFENQLDQYFMNNPDFFFDKPHENVIIDLSNHILQEAHLLCAAKE 445
Query: 682 HPLSLIYDE--KYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIR 739
L+L DE YFG + L ++ L +P D I+ Y + P+ + S+
Sbjct: 446 --LTLKKDEAMDYFGVD-KEVLGKLVSKKDLYQNPRGDY---IYPY---DDNPAMSHSLD 496
Query: 740 AIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKA 799
+ ++ + V M + ++LE +E S+ + + +EGA+ +++G TY V +NL+S K
Sbjct: 497 QLSNDEFRV--MNNGKLLEVMERSQVYREAHEGAILINKGETYQVDSVNLASHFVNVSKN 554
Query: 800 DLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGI 859
+ Y T + I++ K+SK + TV ++ + ++
Sbjct: 555 TVDYHTMVLNKVHINIE-------KKLSKTKYGNLKIHFGELTVEEDYYRYKKMHFSK-- 605
Query: 860 IFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFS-----FRSGLHAASHALLHVVPIY 914
+ L LP + ++ +W VP+ VK +E + F GLH A HAL+ + P++
Sbjct: 606 VIGQFNLDLPPLKFRTKGLWFTVPREVKNNLEDLYKGEEEVFEGGLHGAEHALIGLFPLH 665
Query: 915 VRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDM 958
V C+ D+ N H+ + +YD + GG G++++ D+
Sbjct: 666 VMCDRFDIGGLSTNYHEDTQ-EATVFIYDAYEGGIGITQKAVDV 708
>gi|443288334|ref|ZP_21027428.1| Putative ATP-dependent helicase(DEAD/DEAH box helicase domain)
[Micromonospora lupini str. Lupac 08]
gi|385888664|emb|CCH15502.1| Putative ATP-dependent helicase(DEAD/DEAH box helicase domain)
[Micromonospora lupini str. Lupac 08]
Length = 808
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 260/758 (34%), Positives = 383/758 (50%), Gaps = 49/758 (6%)
Query: 203 PLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAE 262
P++++ LR G+ + HVE + AR V P ++A G+ + HQAE
Sbjct: 35 PVDLLRRLRA-RGAGDPVTHVERVPARVGVPAPWPAWAPSELRAAFARRGVVAPWQHQAE 93
Query: 263 SIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLA 322
+ + G +V+VAT T+SGKSL Y LP L L D ++ LY+ PTKALA DQLRA+
Sbjct: 94 AATLAYDGGHVIVATGTASGKSLAYQLPALATLLADPRATVLYLAPTKALAADQLRAVAG 153
Query: 323 MTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRL 382
+ + YDGDT + +R W+R ++R ++TNPDMLH ILP H Q+S L L
Sbjct: 154 LDLE---GVRPACYDGDTPRAEREWIRRHSRFVLTNPDMLHHGILPGHSQWSGFLRRLA- 209
Query: 383 IAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFS 442
+VVIDE H Y+G FG H A +LRRL R C+ +G+ P FV +
Sbjct: 210 ------------------YVVIDECHTYRGVFGSHVAHVLRRLRRQCAR-FGATPVFVLA 250
Query: 443 TATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPT-----SCLRSVLNKSQTDM 497
+ATS +P L L + + D SP F LW P S V ++ D
Sbjct: 251 SATSGDPATAAGRLTGLP-VTAVTEDASPRGGVTFALWEPPLLPPDSTSPPVPAQAAGDH 309
Query: 498 DDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLV 557
D + S + E + L A+ V G+R +AF RSRK E+V + R L++ P L
Sbjct: 310 DAATDLVQVRRSALRETADLLADTVAEGVRTLAFVRSRKGAEVVATNARRALDDAVPGLG 369
Query: 558 DSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASL 617
D + YR GY+ E+RR +ER G L G+A+TNALELG+D+ +D L G+PG+ ASL
Sbjct: 370 DRVAAYRGGYLREERRELERALLHGDLLGLASTNALELGVDLVGLDAVLICGYPGTRASL 429
Query: 618 WQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVC 677
WQQAGR+GR + +LAV VA + PLD Y + +PE +F +P+E +D N VL L C
Sbjct: 430 WQQAGRAGRSGQEALAVLVARDDPLDTYLVHHPEAIFGAPVEATVLDPANPYVLAPQLAC 489
Query: 678 AALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTIS 737
AA+E PL+ D FG G I L G L P+ Y H + P +
Sbjct: 490 AAVEAPLTPA-DLALFGDGAKEAIDQLVEAGALRQRPT-------GWYWRHRERPE--VD 539
Query: 738 IRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQ 797
+R V++ + +L ++ + F ++ GAVY+HQG +Y+V +L+L+ AL
Sbjct: 540 LRGEGGAPVCVVESATGRLLGTVDGGSSHFLLHPGAVYLHQGVSYVVDDLDLADGCALVH 599
Query: 798 KADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGS 857
+ + T RD TD+ V + + + + + VT+ + R +
Sbjct: 600 AEEPDWSTHARDVTDLSVV----SVRSYVDAGPVGMFLGE---VDVTSQVVSYQRRRIAT 652
Query: 858 GIIFDTVELYLPKYSYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVR 916
G + DT L LP + AVW + P+S+ + Q LHAA HA + ++P+
Sbjct: 653 GEVIDTRPLDLPTRELRTVAVWFTLSPRSLTSAGVQQADVPGALHAAEHAAIGLLPLIAT 712
Query: 917 CNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
C+ D+ H P + +YD HPGG G +++
Sbjct: 713 CDRWDIGGLSTALHPDTEAPT-VFVYDGHPGGAGFAER 749
>gi|403238020|ref|ZP_10916606.1| ATP-dependent RNA helicase yprA [Bacillus sp. 10403023]
Length = 760
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 253/765 (33%), Positives = 408/765 (53%), Gaps = 69/765 (9%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E + +++ +VH I A A +++P ++ + + AL GI +LY+HQ +
Sbjct: 9 ETINFIKENPQYANNIVHWHTIEATSAKSMDMPASIDNRLREALDKRGIHQLYTHQYSAY 68
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
+ +G+N V T T+SGK+LCYNLPVL+ + + S ALY+FPTKALAQDQ L +
Sbjct: 69 EVTRSGRNFVAVTPTASGKTLCYNLPVLQTIVENDKSRALYLFPTKALAQDQKSELNEII 128
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
+ +I+ YDGDT R +R ++ITNPDMLH +ILP+H ++ + NL
Sbjct: 129 EEMGVAINSYTYDGDTPANIRQKVRKAGHIVITNPDMLHSAILPHHTKWVSLFENL---- 184
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
++VVIDE H Y+G FG H A ++RRL R+C YGS+P F+ ++A
Sbjct: 185 ---------------KYVVIDELHTYRGVFGSHVANVIRRLKRICK-FYGSNPIFMCTSA 228
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T ANP+E L + +ELI+N+G+P +K FV +NP ++NK
Sbjct: 229 TIANPKELAENLTG-TPMELIENNGAPTGRKHFVFYNP-----PIVNK----------PL 272
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILE-ETAPHLVDSICVY 563
N S EV L +E +Q+ ++ I F RSR E++L+Y +E+++ + P +I Y
Sbjct: 273 NIRRSATLEVRKLASEFLQNKIQTIVFARSRVRVEIILTYLQELVKHKIGP---KAIRGY 329
Query: 564 RAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGR 623
R GY+ + RR IE+ G++ GV +TNALELG+D+G + V + G+PG+IAS WQQAGR
Sbjct: 330 RGGYLPKQRREIEQGLRNGEIYGVISTNALELGVDIGQLQVCIMTGYPGTIASAWQQAGR 389
Query: 624 SGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHP 683
+GRR+ ++ VA PLDQ+ ++ PE F E I+ N +L H+ CAA E P
Sbjct: 390 AGRRQGEAVIFMVASSNPLDQFMIQNPEYFFSRNPETARINPNNLVILIDHIKCAAYELP 449
Query: 684 LSLIYDEKYFGSGLSSGITTLKN-RGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIE 742
F SG + G L++ +L+ + L + + Y ++ P+H IS+R+
Sbjct: 450 ---------FKSGDTFGDLDLEDILEFLTEERVLHQNGDKW-YWMNDSFPAHNISLRSAS 499
Query: 743 SERYEVI---DMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKA 799
E +I D+ + +V+ E++ A +++ A+Y+HQG + V++L+ K A ++
Sbjct: 500 QENVVIIDQTDIAAVKVIGEMDRFSAMTLLHDEAIYLHQGVQFQVEKLDWEEKKAFVREV 559
Query: 800 DLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGI 859
D+ Y+T + V + + + + QA+A F + GSG
Sbjct: 560 DVDYYTDANLAVSLRVLEVDKQRTNEKLEIGFGDVSVQAMATIFKKIKFETHENI-GSGP 618
Query: 860 IFDTVELYLPKYSYESQAVWIQVPQS-VKAVVEQNFSFRSGLHAASHALLHVVPIYVRCN 918
I +LP+ + + WI + +S ++ + ++ GL ++ L HV P+ C+
Sbjct: 619 I------HLPEEELHTSSAWISLKKSELEGITDERIE--EGLVGVANVLRHVAPLMTMCD 670
Query: 919 FSDL--APECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDMKMN 961
SDL P+ H+ + I LYDR+PGG G+S++V D+ N
Sbjct: 671 PSDLHVVPQVKAVHNEQ---PTIFLYDRYPGGIGLSEKVYDVMEN 712
>gi|420879458|ref|ZP_15342825.1| putative helicase [Mycobacterium abscessus 5S-0304]
gi|420902651|ref|ZP_15365982.1| putative helicase [Mycobacterium abscessus 5S-0817]
gi|420970266|ref|ZP_15433467.1| putative helicase [Mycobacterium abscessus 5S-0921]
gi|392084367|gb|EIU10192.1| putative helicase [Mycobacterium abscessus 5S-0304]
gi|392100012|gb|EIU25806.1| putative helicase [Mycobacterium abscessus 5S-0817]
gi|392176204|gb|EIV01865.1| putative helicase [Mycobacterium abscessus 5S-0921]
Length = 777
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 254/743 (34%), Positives = 374/743 (50%), Gaps = 68/743 (9%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
H+ DI AR A + P + +A + G++ +SHQ + + G++VVVAT T+S
Sbjct: 34 HICDIPARNAEVTSWPQWAHSDAIAAFAAQGVTAPWSHQVAAATLAFTGRHVVVATGTAS 93
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFD--ASIDIGVYDGD 339
GKS+ Y LP+L AL+ + + ALY+ PTKAL DQLRA+ + D + YDGD
Sbjct: 94 GKSVAYQLPILTALASEPRARALYLAPTKALGHDQLRAVRELITGVDNFERVQPCTYDGD 153
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
++ + R + R+++R + TNPDM+H+S+L H ++S L LR
Sbjct: 154 SSNELRRFARESSRWIFTNPDMIHVSLLHNHTRWSAFLRGLR------------------ 195
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
++V+DE H Y+G FG + AL+L+RL RLC YG+ P+ VF++AT+ANP L
Sbjct: 196 -YLVVDECHYYRGVFGSNVALVLQRLLRLCER-YGAHPTVVFASATTANPGAAAQALIGQ 253
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPIS-EVSYLF 518
E++ DGSP + LW P + T P+S E S L
Sbjct: 254 PVEEVVA-DGSPHGMRTVALWEPPL------------LPITGENGAPVRRPVSTETSRLL 300
Query: 519 AEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERD 578
A++VQ G R +AF RSR+ E+ L E P LV + YRAGY+ EDRR +E+
Sbjct: 301 ADLVQEGARTLAFVRSRRGAEMTALGAAHRLAEVDPGLVSQVAAYRAGYLPEDRRALEQA 360
Query: 579 FFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAF 638
G L G A TNALELG+D+ +D + GFPG++AS WQQAGRSGRR + SL V VA
Sbjct: 361 LSSGTLTGAATTNALELGVDIAGLDAVVVAGFPGTVASFWQQAGRSGRRGQGSLVVLVAR 420
Query: 639 EGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSG-- 696
+ PLD Y + +PE L PIE ID N VL HL+CAA E PL+ D + +G
Sbjct: 421 DDPLDTYLVHHPEALLDKPIEAVVIDPTNPHVLRPHLLCAATELPLTE-DDVRSLDAGQV 479
Query: 697 ----LSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQ 752
+ G+ + GY ++ P L+ P + IR + +++
Sbjct: 480 VSDLVDDGLLRKRPGGYFAA-PGLN--------------PYAAVDIRGSIGGQVMILEAD 524
Query: 753 SNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTD 812
+ VL ++ +A V+ GAVY+H G TY+V L+ IAL Y T R D
Sbjct: 525 TGRVLGTVDTGRAPATVHPGAVYLHSGETYVVDSLDFGDGIALVHNDRPDYSTFARSTID 584
Query: 813 IHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYS 872
I ++G + + L + VT G+ R +G I D VEL +P +
Sbjct: 585 IAITG-------EGERIDLGDIQIGLVPVDVTHRVIGYLRKLT-TGEILDFVELDMPSST 636
Query: 873 YESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHD 931
++AV V P+++ + S LHAA HA + ++P+ C+ +D+
Sbjct: 637 LSTKAVMYTVTPEALADIDIDPLSTPGALHAAEHAAIGLLPLVASCDRADIGGVSTALQP 696
Query: 932 SRYFPERILLYDRHPGGTGVSKQ 954
P + +YD HPGG G + +
Sbjct: 697 ETGLPT-VFVYDGHPGGAGFAAR 718
>gi|414579899|ref|ZP_11437042.1| putative helicase [Mycobacterium abscessus 5S-1215]
gi|420886171|ref|ZP_15349531.1| putative helicase [Mycobacterium abscessus 5S-0421]
gi|420890327|ref|ZP_15353675.1| putative helicase [Mycobacterium abscessus 5S-0422]
gi|420892673|ref|ZP_15356017.1| putative helicase [Mycobacterium abscessus 5S-0708]
gi|420906520|ref|ZP_15369838.1| putative helicase [Mycobacterium abscessus 5S-1212]
gi|392081934|gb|EIU07760.1| putative helicase [Mycobacterium abscessus 5S-0421]
gi|392088075|gb|EIU13897.1| putative helicase [Mycobacterium abscessus 5S-0422]
gi|392104424|gb|EIU30210.1| putative helicase [Mycobacterium abscessus 5S-1212]
gi|392108554|gb|EIU34334.1| putative helicase [Mycobacterium abscessus 5S-0708]
gi|392124423|gb|EIU50184.1| putative helicase [Mycobacterium abscessus 5S-1215]
Length = 769
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 254/742 (34%), Positives = 375/742 (50%), Gaps = 66/742 (8%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
H+ DI AR A + P + +A + G++ +SHQ + + G++VVVAT T+S
Sbjct: 26 HICDIPARNAEVTSWPQWAHSDAIAAFAAQGVTAPWSHQVAAATLAFTGRHVVVATGTAS 85
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFD--ASIDIGVYDGD 339
GKS+ Y LP+L AL+ + + ALY+ PTKAL DQLRA+ + D + YDGD
Sbjct: 86 GKSVAYQLPILTALASEPRARALYLAPTKALGHDQLRAVRELITGVDNFERVQPCTYDGD 145
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
++ + R + R+++R + TNPDM+H+S+L H ++S L LR
Sbjct: 146 SSNELRRFARESSRWIFTNPDMIHVSLLHNHTRWSAFLRGLR------------------ 187
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
++V+DE H Y+G FG + AL+L+RL RLC YG+ P+ VF++AT+ANP L
Sbjct: 188 -YLVVDECHYYRGVFGSNVALVLQRLLRLCER-YGAHPTVVFASATTANPGAAAQALIGQ 245
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
E++ DGSP + LW P L + + N A +E S L A
Sbjct: 246 PVEEVVA-DGSPHGMRTVALWEPP--LLPITGE---------NGAPVRRPVSTETSRLLA 293
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDF 579
++VQ G R +AF RSR+ E+ L E P LV + YRAGY+ EDRR +E+
Sbjct: 294 DLVQEGARTLAFVRSRRGAEMTALGAAHRLAEVDPGLVSQVAAYRAGYLPEDRRALEQAL 353
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFE 639
G L G A TNALELG+D+ +D + GFPG++AS WQQAGRSGRR + SL V VA +
Sbjct: 354 SSGTLTGAATTNALELGVDIAGLDAVVVAGFPGTVASFWQQAGRSGRRGQGSLVVLVARD 413
Query: 640 GPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSG--- 696
PLD Y + +PE L PIE ID N VL HL+CAA E PL+ D + +G
Sbjct: 414 DPLDTYLVHHPEALLDKPIEAVVIDPTNPHVLRPHLLCAATELPLTE-DDVRSLDAGQVV 472
Query: 697 ---LSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQS 753
+ G+ + GY ++ P L+ P + IR + +++ +
Sbjct: 473 SDLVDDGLLRKRPGGYFAA-PGLN--------------PYAAVDIRGSIGGQVMILEADT 517
Query: 754 NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDI 813
VL ++ +A V+ GAVY+H G TY+V L+ IAL Y T R DI
Sbjct: 518 GRVLGTVDTGRAPATVHPGAVYLHSGETYVVDSLDFGDGIALVHNDRPDYSTFARSTIDI 577
Query: 814 HVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSY 873
++G + + L + VT G+ R +G I D VEL +P +
Sbjct: 578 AITG-------EGERIDLGDIQIGLVPVDVTHRVIGYLRKLT-TGEILDFVELDMPSSTL 629
Query: 874 ESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDS 932
++AV V P+++ + S LHAA HA + ++P+ C+ +D+
Sbjct: 630 STKAVMYTVTPEALADIDIDPLSTPGALHAAEHAAIGLLPLVASCDRADIGGVSTALQPE 689
Query: 933 RYFPERILLYDRHPGGTGVSKQ 954
P + +YD HPGG G + +
Sbjct: 690 TGLPT-VFVYDGHPGGAGFAAR 710
>gi|148642172|ref|YP_001272685.1| EIF-4a family ATP-dependent RNA helicase [Methanobrevibacter
smithii ATCC 35061]
gi|148551189|gb|ABQ86317.1| ATP-dependent RNA helicase, eIF-4A family [Methanobrevibacter
smithii ATCC 35061]
Length = 866
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 256/764 (33%), Positives = 403/764 (52%), Gaps = 73/764 (9%)
Query: 207 VEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMA 266
++ + + + ++ HVE I ARKA ++ D L LKS +KLY HQ+E+ A
Sbjct: 6 IDMFKNDVRYRDRIAHVETIPARKASYKKV-DNLNPKIVDYLKSKN-AKLYKHQSETYEA 63
Query: 267 SLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKA 326
+NV++ T T+SGK+L +NLP++E + D ++ALY++P KAL+ DQL L + K+
Sbjct: 64 IQNDENVIITTPTASGKTLAFNLPIMETMIEDEDATALYIYPAKALSNDQLHVLENLEKS 123
Query: 327 FDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFS 386
D I+ YDGDT + R +R +R+++TNP LH+ IL +H Q+ R SNL+
Sbjct: 124 LDIKINPNTYDGDTPKSKRYDIRQKSRIILTNPYQLHL-ILSWHHQWKRFYSNLK----- 177
Query: 387 LVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATS 446
F+VIDE+H YKG FG + A ++RRL R+ ++ YG++P F+ S+AT
Sbjct: 178 --------------FIVIDESHYYKGIFGSNVAYLIRRLKRI-ANFYGANPQFILSSATL 222
Query: 447 ANPREHCMELANLSTLE---LIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNA 503
ANP +ELAN T E L+ ND SP +K F+L+NP R R
Sbjct: 223 ANP----LELANRLTGEKFRLVDNDTSPSGEKDFILYNPFRNYR-------------RKK 265
Query: 504 ANKTSSPIS--EVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSIC 561
N +P E +F ++ ++ + F SRK+ EL+ + ++ ++ L I
Sbjct: 266 HNSEEAPSVHIETENIFVYLMLKDIQTLCFTVSRKITELIAMWAKKDMDNIKKKLTHRIT 325
Query: 562 VYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQA 621
YRAGY A++RR IE K GV TNALELGI++G +D + G+PG++ S WQQ+
Sbjct: 326 AYRAGYQADERREIEDGLKSRKYLGVTCTNALELGINIGSLDAVIISGYPGTMISTWQQS 385
Query: 622 GRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALE 681
GR+GR + SLA+ VAFE LDQYFM P+ F P E ID NH + E HL+CAA E
Sbjct: 386 GRAGRSNQKSLAILVAFENQLDQYFMNNPDFFFDKPHENVIIDLSNHILQEAHLLCAAKE 445
Query: 682 HPLSLIYDE--KYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIR 739
L+L DE YFG + L ++ L +P D I+ Y + P+ + S+
Sbjct: 446 --LTLKKDEAMDYFGVD-KEVLGKLVSKKDLYQNPRGDY---IYPY---DDNPAMSHSLD 496
Query: 740 AIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKA 799
+ ++ + V M + ++LE +E S+ + + +EGA+ +++G TY V +NL+S K
Sbjct: 497 QLSNDEFRV--MNNGKLLEVMERSQVYREAHEGAILINKGETYQVDSVNLASHFVNVSKN 554
Query: 800 DLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGI 859
+ Y T + I++ K+SK + TV ++ + ++
Sbjct: 555 TVDYHTMVLNKVHINIE-------KKLSKTKYGNLKIHFGELTVEEDYYRYKKMHFSK-- 605
Query: 860 IFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFS-----FRSGLHAASHALLHVVPIY 914
+ L LP + ++ +W VP+ VK +E + F GLH A HAL+ + P++
Sbjct: 606 VIGQFNLDLPPLKFRTKGLWFTVPREVKNNLEDLYKGEEEVFEGGLHGAEHALIGLFPLH 665
Query: 915 VRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDM 958
V C+ D+ N H+ I +YD + GG G++++ D+
Sbjct: 666 VMCDRFDIGGLSTNYHEDTQ-EATIFIYDAYEGGIGITQKAVDV 708
>gi|373856584|ref|ZP_09599328.1| DEAD/DEAH box helicase domain protein [Bacillus sp. 1NLA3E]
gi|372453563|gb|EHP27030.1| DEAD/DEAH box helicase domain protein [Bacillus sp. 1NLA3E]
Length = 784
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 252/736 (34%), Positives = 388/736 (52%), Gaps = 66/736 (8%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
I A++A +PD L AL+ GI++LY+HQ + + ++V T T+SGK+L
Sbjct: 56 IEAKEAKTASLPDGLHPKLAKALEQRGINQLYTHQFSAYQSVTNNCSIVAVTPTASGKTL 115
Query: 286 CYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDR 345
CYNLPV++ L +D + ALYMFPTKALAQDQ L + + D ++ YDGDT R
Sbjct: 116 CYNLPVIQTLMNDRHARALYMFPTKALAQDQKSELNELIQEGDLDLNCYTYDGDTAANIR 175
Query: 346 MWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVID 405
+R ++ITNPDMLH +ILP+H ++ + NL ++VVID
Sbjct: 176 QKVRRAGHIVITNPDMLHSAILPHHTKWVSLFENL-------------------KYVVID 216
Query: 406 EAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELI 465
E H Y+G FG H A ++RRL R+C H YGSDP F+ ++AT ANP E L + LI
Sbjct: 217 ELHIYRGVFGSHVANVIRRLRRIC-HYYGSDPVFICTSATIANPLELAERLTE-KQMTLI 274
Query: 466 QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHG 525
N+G+P +K F+ +NP V+NK N S E L E++++
Sbjct: 275 DNNGAPSGRKHFLFYNP-----PVINK----------PLNIRKSATLEAKRLAGELLKNK 319
Query: 526 LRCIAFCRSRKLCELVLSYTREILE-ETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKL 584
++ I F RSR E++L+Y +E+++ + P SI YR GY+ +RR IE+ G++
Sbjct: 320 IQTIVFARSRVRVEILLTYLKELVKYQLGP---KSIRGYRGGYLPTERREIEKGLRSGEI 376
Query: 585 CGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQ 644
GV +TNALELG+D+G + V + G+PGSIAS WQQAGR+GRR SL + VA PLDQ
Sbjct: 377 YGVVSTNALELGVDIGQLQVCIMTGYPGSIASAWQQAGRAGRRHEESLVILVASSSPLDQ 436
Query: 645 YFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTL 704
Y ++ P+ FK E I+ N +L H+ CAA E P + + FG+ + T
Sbjct: 437 YVIQNPDYFFKRSPETARINPDNLIILVDHMKCAAYELPFR---NGELFGT-----VETE 488
Query: 705 KNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVID---MQSNEVLEEIE 761
+ YL+ + L + + Y ++ P+H IS+R+ E +ID + +V+ E++
Sbjct: 489 EILEYLTEERVLYQNGDKW-YWMNDSFPAHNISLRSASQENVVIIDQTEVGKAKVIGEMD 547
Query: 762 ESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNA 821
A ++E A+Y+HQG + V+ L+ K A ++ ++ YFT + V +
Sbjct: 548 RFSAMTLLHEEAIYLHQGIQFQVEMLDWDEKKAFVREVEVDYFTDANLAVQLKVLEIDKE 607
Query: 822 YATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQ 881
+ + + QA+A F + GSG I LP+ + A WI
Sbjct: 608 RSEAACQLGYGDVSVQAMATIFKKIKFETHENI-GSGPI------NLPEEELHTSAAWIS 660
Query: 882 VPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDL--APECPNPHDSRYFPERI 939
+ + + + E+ GL +HAL +VP++V C+ D+ P+ H+ + I
Sbjct: 661 LQEDLNSYSEERIE--QGLIGTAHALKSIVPLFVMCDPQDIHVVPQVKAAHNEK---PTI 715
Query: 940 LLYDRHPGGTGVSKQV 955
YDR+PGG G+S ++
Sbjct: 716 FFYDRYPGGIGLSDKI 731
>gi|284047011|ref|YP_003397351.1| hypothetical protein Cwoe_5571 [Conexibacter woesei DSM 14684]
gi|283951232|gb|ADB53976.1| Protein of unknown function DUF1998 [Conexibacter woesei DSM 14684]
Length = 761
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 255/739 (34%), Positives = 391/739 (52%), Gaps = 60/739 (8%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATM 278
++VH + R +P L +AL GI L++HQ +++ A++ G ++V T
Sbjct: 23 RLVHESLVPPRPGRAAPMPRELHHEVTAALGRVGIGALHTHQRDALFAAMDGP-MIVTTG 81
Query: 279 TSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDG 338
T+SGKSLC+NLP L+ L D + ALY++PTKALAQDQ RAL A+ + +YDG
Sbjct: 82 TASGKSLCFNLPTLQMLHVDPRARALYLYPTKALAQDQARALAALRLE---KLRPAIYDG 138
Query: 339 DTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLF 398
DT Q +R +R +A +++TNPDMLH+ ILP H + L+NL +
Sbjct: 139 DTPQIERRAIRRSANVVLTNPDMLHVGILPNHAAWGDFLANLAV---------------- 182
Query: 399 IRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELAN 458
VV+DEAH Y+G FG H +LRRL R+ + YG++P F+ ++AT ANP E L
Sbjct: 183 ---VVVDEAHVYRGVFGSHVGNVLRRLRRIAA-AYGTEPRFLLASATVANPLELAERLTG 238
Query: 459 LSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLF 518
L + L+ DG+P AQ+ +WNP +D+T A +S +SE + LF
Sbjct: 239 LDDITLVDEDGAPSAQRRIAMWNPPL------------LDETLGA---RASALSEAADLF 283
Query: 519 AEMVQHGLRCIAFCRSRKLCELVL-SYTREILEETAPHLVDSICVYRAGYVAEDRRRIER 577
A++V G R I F +SRK E+++ S + + + LVD I YRAGY A RR +E+
Sbjct: 284 ADLVAAGARTICFMKSRKGVEIIMRSASARLRQGGHEDLVDRIAPYRAGYTAYQRRELEQ 343
Query: 578 DFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVA 637
G+L GV AT+ALELGID+G +D + + FPG++ASL +Q R LAVY+A
Sbjct: 344 RLTRGELRGVVATDALELGIDIGELDAAICVTFPGTVASL-RQMWGRAGRRGRGLAVYIA 402
Query: 638 FEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGL 697
E LDQ+F ++P++ + P+E +D +N ++ HL+CAA E PL+ D + G
Sbjct: 403 GEDALDQFFCRHPDEFLERPVEAAILDHENDQIHAAHLLCAAHEGPLA-PGDAEVLGPNW 461
Query: 698 SSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVL 757
L G L ++ K F+ E P+ + +R+ ++ + +ID + EV+
Sbjct: 462 HEHAERLVGEGLL-----IERRGK-FQLRAPEDFPAARVPLRSASTDIFTMIDAVNGEVI 515
Query: 758 EEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSG 817
+E ++AF ++GAVY+H G Y V++L+L + AL D +FT+ R T +
Sbjct: 516 GTMEAARAFNTAHDGAVYLHMGRAYEVEQLDLHDRRALLAPFDGDWFTQPRRETMTSIE- 574
Query: 818 GNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQA 877
I + + T VT G+ R D L LP+ ++ +QA
Sbjct: 575 ------RLIERRETMGVTLTFGNVIVTDLVVGYQRKSLVDHETIDFHSLDLPETAFTTQA 628
Query: 878 VWIQVPQSVKAVVEQNFSFR--SGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYF 935
+W ++ +V + FS R LHAA H+ + V+P+ C+ D+ N H
Sbjct: 629 LWYELDDAV--LGPDAFSDRLLGALHAAEHSQIAVLPLLAMCDRWDIGGLSTNAHPQTGR 686
Query: 936 PERILLYDRHPGGTGVSKQ 954
P I +YD HPGG G+++Q
Sbjct: 687 PT-IFIYDGHPGGVGITRQ 704
>gi|337747204|ref|YP_004641366.1| hypothetical protein KNP414_02938 [Paenibacillus mucilaginosus
KNP414]
gi|379721051|ref|YP_005313182.1| hypothetical protein PM3016_3178 [Paenibacillus mucilaginosus 3016]
gi|386723658|ref|YP_006189984.1| hypothetical protein B2K_16075 [Paenibacillus mucilaginosus K02]
gi|336298393|gb|AEI41496.1| YprA [Paenibacillus mucilaginosus KNP414]
gi|378569723|gb|AFC30033.1| YprA [Paenibacillus mucilaginosus 3016]
gi|384090783|gb|AFH62219.1| hypothetical protein B2K_16075 [Paenibacillus mucilaginosus K02]
Length = 761
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 251/765 (32%), Positives = 394/765 (51%), Gaps = 77/765 (10%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
EM++ +R Q+ + I R+ PD L AL + G+S+LY+HQA+S
Sbjct: 13 EMLDLIRSTPEIMNQVSYWHTIPPREGAYEPFPDGLHPQLAEALAARGVSQLYTHQAQSF 72
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
G++VV T T+SGK+LCYNLPV++ + D S+ ALY+FPTKALAQDQ+ L +
Sbjct: 73 REVAKGRHVVTVTPTASGKTLCYNLPVVQGILTDESARALYLFPTKALAQDQVAELQELA 132
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
A I YDGDT R +R+ +++TNPDMLH +ILP+H ++ ++ N
Sbjct: 133 NVMGADIKTHTYDGDTPPAVRTAIRNAGHIVVTNPDMLHSAILPHHTKWVKLFEN----- 187
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
++++VIDE H Y+G FG H A ++RRL R+C YGS+P F+ ++A
Sbjct: 188 --------------VKYIVIDEVHTYRGVFGSHVANVIRRLKRIC-RFYGSNPQFICASA 232
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T NP+EH L + L+ N+G+P +K FV +NP + L ++ + +TR A
Sbjct: 233 TIDNPKEHAERLIG-EAVSLVDNNGAPAGEKHFVFYNP-PVVNQQLGIRRSSVLETRKIA 290
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTRE-ILEETAPHLVDSICVY 563
+++ G++ I F RSR E++L+Y +E ++ E SI Y
Sbjct: 291 GL--------------LLKQGIQTIVFARSRVRVEILLTYLQELVVNELGS---KSIRGY 333
Query: 564 RAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGR 623
R GY+ + RR IER G++ GV +TNALELGID+G + + G+PG+IAS WQQ+GR
Sbjct: 334 RGGYLPKLRREIERGLRSGEIRGVVSTNALELGIDIGQLQACVLNGYPGTIASTWQQSGR 393
Query: 624 SGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHP 683
+GRR+ S+ VA PLDQY ++ P + P E I+ N +L H+ CAA E P
Sbjct: 394 AGRRQESSVTFLVASSNPLDQYMIQNPRFFIERPPERALIEPDNLIILVDHVKCAAYELP 453
Query: 684 LSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIES 743
EK+ G L + +L+ + L + ++ + P+H IS+R+
Sbjct: 454 FEA--GEKFGGESLKDILE------FLTEERILHRVKDRWHWM-EQSFPAHDISLRSAAQ 504
Query: 744 ERYEVIDMQSN-EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLK 802
E + +IDM S +V+ E++ A ++E A+Y+H+G Y V++L+ K A ++ D+
Sbjct: 505 ENFIIIDMTSGAKVIGEVDRFSAPTMIHEEAIYIHEGVQYQVEKLDYEEKKAYIREVDVD 564
Query: 803 YFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFD 862
YFT + V K Q + T A A T F +L I
Sbjct: 565 YFTDASLAVQLKVLHVQREAVDHGLKRQFGEVTVNAKA-----TIFKKIKLRTHENI--G 617
Query: 863 TVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDL 922
+ ++LP+ + + W + V A + N + L S+ L+H+ P+Y+ C
Sbjct: 618 SGPIHLPEEELHTSSYWFTFDEEVAAQMSVN-DMQFALLGLSNVLVHIAPLYLMC----- 671
Query: 923 APECPNPHDSRYFPE---------RILLYDRHPGGTGVSKQVTDM 958
+PHD R P+ I YDR+PGG G+S+++ ++
Sbjct: 672 -----DPHDIRVVPQVKAVHNKQPTIFFYDRYPGGVGLSERLYEV 711
>gi|311030347|ref|ZP_07708437.1| ATP-dependent RNA helicase yprA [Bacillus sp. m3-13]
Length = 755
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 250/759 (32%), Positives = 394/759 (51%), Gaps = 65/759 (8%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E+++ ++ +VH E + ++A V P + ++L GI+ LY+HQA +
Sbjct: 9 EVIDWMKSEESIAKNIVHWETVPPKEAQTVPFPAQIDKRLLNSLTERGINSLYTHQAAAF 68
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
A+ K+ V T T+SGK+LCYNLPVL+ + + + ALY+FPTKALAQDQ L +
Sbjct: 69 EAATNKKHFVAVTPTASGKTLCYNLPVLQKIEQNNDARALYLFPTKALAQDQKSELNEII 128
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
I+ YDGDT R +R ++ITNPDMLH +ILP+H ++ + NL
Sbjct: 129 TQMGVPINSYTYDGDTAPTIRQKVRKAGHIVITNPDMLHSAILPHHTKWVSLFENL---- 184
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
++VIDE H Y+G FG H A ++RRL R+C YGS P+F+ ++A
Sbjct: 185 ---------------EYIVIDELHTYRGVFGSHVANVIRRLKRICK-FYGSSPTFICTSA 228
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T ANP+E EL + ELI N+G+P ++K V +NP ++NK
Sbjct: 229 TIANPKELAQELTG-ESFELINNNGAPSSKKHIVFYNP-----PIVNK----------PL 272
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYR 564
N S EV L AE +Q ++ I F +SR E++L+Y +E+++ SI YR
Sbjct: 273 NIRRSATLEVRKLAAEFLQEKIQTIVFAKSRVRVEILLTYLKELVKNQLGE--KSIQGYR 330
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
GY+ RR IE+ G++ GV +TNALELG+D+G + V + G+PG+IAS WQQAGR+
Sbjct: 331 GGYLPTQRRAIEKGLRNGEIYGVVSTNALELGVDIGQLQVCIMTGYPGTIASAWQQAGRA 390
Query: 625 GRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
GRR+ ++ V VA PLDQY +++PE KS E I+ N +L H+ CAA E P
Sbjct: 391 GRRQGEAVIVMVASSNPLDQYVIQHPEFFLKSNPESARINPNNLVILVDHIKCAAYELP- 449
Query: 685 SLIYDEKYFGSGLS-SGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIES 743
F G + G+ YL+ + L + + ++ ++ P+H IS+R+
Sbjct: 450 --------FKEGDTFDGVELEDILDYLTEERVLHENGGKWHWM-NDAFPAHNISLRSASQ 500
Query: 744 ERYEVIDMQS---NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKAD 800
E +ID S N+V+ E++ + +++ A+Y+HQG Y V++L+ K A ++ +
Sbjct: 501 ENVIIIDQSSEPANKVIGEMDRFSSMTLLHDEAIYLHQGVQYQVEKLDWEEKKAFVREVN 560
Query: 801 LKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGII 860
+ YFT + V + + + +A+A F + GSG I
Sbjct: 561 VDYFTDANLAVSLDVLEVDKQTDYQAGTISFGDVSVRAMATIFKKIKFETHENI-GSGPI 619
Query: 861 FDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFS 920
YLP+ ++ A WI + + + ++ + L +HAL HV P+ + C
Sbjct: 620 ------YLPEEELQTSATWITLEEEITERLKGD-DLEKSLLGIAHALKHVTPLLLMCEPM 672
Query: 921 DL--APECPNPHDSRYFPERILLYDRHPGGTGVSKQVTD 957
D+ P+ + HD + + YDR+PGG G+S++ D
Sbjct: 673 DMQVVPQVKSTHDEKPV---VYFYDRYPGGVGLSEKAYD 708
>gi|291298048|ref|YP_003509326.1| DEAD/DEAH box helicase [Stackebrandtia nassauensis DSM 44728]
gi|290567268|gb|ADD40233.1| DEAD/DEAH box helicase domain protein [Stackebrandtia nassauensis
DSM 44728]
Length = 763
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 261/742 (35%), Positives = 383/742 (51%), Gaps = 70/742 (9%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
HV + AR A + PD + + +L + GI + + HQ E+ GK+ V+AT T+S
Sbjct: 23 HVHAVPARVAEFADWPDWVPAELRESLAAAGIERPWRHQIEAARRVHDGKHTVIATGTAS 82
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL--LAMTKAFDASIDIGVYDGD 339
GKSL Y LPVL AL+ D + ALY+ PTKALA DQ R++ LA A++D GD
Sbjct: 83 GKSLAYQLPVLSALATDEGACALYLSPTKALAADQARSVKKLASPGCVAATLD-----GD 137
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T + R W+ +A L++TNPDMLH +ILP H +++R+L LR
Sbjct: 138 TPYEQRQWIGRHANLILTNPDMLHHAILPRHDRWARLLRQLR------------------ 179
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
++V+DE HAY+G FG H AL+LRRL RL H +G+DP FV ++AT+ +P L +
Sbjct: 180 -YIVVDECHAYRGVFGSHVALVLRRLARLARH-HGADPVFVAASATTGDPAHGASRLLGV 237
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
+E + D SP F LW P D+ +A + S+ ++E S L A
Sbjct: 238 E-VEAVTEDHSPHPGVTFGLWEPPLL---------PDVTGEHDAPVRKSA-LTETSQLLA 286
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDF 579
++V +R +AF RSR+ ELV S RE L T + YR+GY+ EDRR +E D
Sbjct: 287 DLVSRQVRTVAFVRSRRGVELVSSLARESLAGTG--RSSRVAAYRSGYLREDRRALENDL 344
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFE 639
G L GVAATNALELGID+ +D L G+PG++ASLWQQ+GR+GR + P+LA+ VA +
Sbjct: 345 RDGLLLGVAATNALELGIDIAGLDAILLCGYPGTLASLWQQSGRAGRGDIPALAILVARD 404
Query: 640 GPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSS 699
PLD Y + +PE +F P+E +D N +L HL+CAA EH LS D FG ++
Sbjct: 405 DPLDTYLVHHPEAVFSRPVEATVLDPANPYILGPHLLCAAYEHRLSPT-DVDLFGGEIAE 463
Query: 700 GITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEE 759
+ G ++ + + Y+ ++ + +R +VID +S E+L
Sbjct: 464 ELL-----GEFAAAKIVRHRKTGWFYVARDRP---EVGLRGGVGTPIDVIDTESGELLGT 515
Query: 760 IEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGN 819
++ + A V+ GAVY+HQG +YLV+ L+ A ++ T RD TD+
Sbjct: 516 VDTASAHTLVHPGAVYLHQGSSYLVESLDEEDSAAFVTSVRPEWSTYPRDTTDL------ 569
Query: 820 NAYATKISKDQLTKTTAQALAC----TVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYES 875
+I K + C VT G+ R G D V L LP + +
Sbjct: 570 -----RILKLRRYVDAGPIGLCFGDVEVTNQVVGYQRRKLPGGEFMDEVPLALPPRTLRT 624
Query: 876 QAVWIQVPQSVKAVVEQNFS---FRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDS 932
AVW + S A+++ S LHAA HA + ++P+ C+ D+ H
Sbjct: 625 VAVWWTI--SENAILDTGLSKTDIPGALHAAEHAAIGLLPLVATCDRWDIGGLSTAGHPD 682
Query: 933 RYFPERILLYDRHPGGTGVSKQ 954
P + +YD H GG G +++
Sbjct: 683 TGVPT-VFVYDGHHGGAGFAER 703
>gi|398783986|ref|ZP_10547315.1| helicase/secretion neighborhood DEAH-box helicase [Streptomyces
auratus AGR0001]
gi|396995575|gb|EJJ06588.1| helicase/secretion neighborhood DEAH-box helicase [Streptomyces
auratus AGR0001]
Length = 749
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 253/728 (34%), Positives = 377/728 (51%), Gaps = 61/728 (8%)
Query: 237 PDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL- 295
P+ + A++S GI + ++HQA + ++ G++VVVAT T+SGKSL Y PVL L
Sbjct: 12 PEQIRPEVIDAIRSAGIERPWAHQARTSEHAVRGESVVVATGTASGKSLAYLAPVLSTLL 71
Query: 296 -----SHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRD 350
+ ++ALY+ PTKALA DQ RA+ + ++ VYDGDT ++R W+R
Sbjct: 72 DGSEAPNGRGATALYLAPTKALAADQRRAVRELAAPLGTAVRPAVYDGDTPVEEREWVRQ 131
Query: 351 NARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAY 410
A ++TNPDMLH ILP H ++S L LR +VVIDE H+Y
Sbjct: 132 YANYVLTNPDMLHSGILPSHPRWSSFLRALR-------------------YVVIDECHSY 172
Query: 411 KGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGS 470
+G FG H A I+RRL RLC+ YGSDP F+ ++AT+A P + L L +E I D S
Sbjct: 173 RGVFGSHVAQIVRRLRRLCAR-YGSDPVFLLASATAAEPGQAATRLTGLPVVE-ITEDTS 230
Query: 471 PCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIA 530
P + +F LW P T++ + A + ++ +E + L ++ G+R +A
Sbjct: 231 PRGELVFALWEP----------PLTELHGEQGAPVRRTA-TAETADLLTDLAVQGVRTVA 279
Query: 531 FCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAAT 590
F RSR+ EL+ T+E L E L + YR GY+ E+RR +ER G L G+AAT
Sbjct: 280 FVRSRRGAELIALITQERLAEVDRSLPGRVAAYRGGYLPEERRALERALHSGDLLGLAAT 339
Query: 591 NALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYP 650
ALELG+DV +D + G+PG+ ASLWQQAGR+GR + +LAV VA + PLD Y + +P
Sbjct: 340 TALELGVDVSGLDAVVIAGYPGTRASLWQQAGRAGRSGQGALAVLVARDDPLDTYLVHHP 399
Query: 651 EKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYL 710
E LF P+E +D N VL HL AA E PL+ D FG+ + + L+ G L
Sbjct: 400 EALFDQPVETTVLDPDNPYVLAPHLCAAASEIPLTEA-DFALFGTAAAGLMPQLEAAGLL 458
Query: 711 SSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVY 770
A+ + + E+ + IR +V++ + +L ++ + A V+
Sbjct: 459 R------RRARAWHWTRRERA-ADLADIRGQGGSPVQVVEAGTGRLLGTVDAAAAHTTVH 511
Query: 771 EGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQ 830
+GAV++HQG +Y+V+ L+L +AL ++A Y T RD T I V + D
Sbjct: 512 DGAVHLHQGRSYVVQRLDLDDDVALVEEASPPYSTTARDTTAISV----------LETDT 561
Query: 831 LTKTTAQAL---ACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVK 887
A L + VT F R +G + +L LP + ++AVW V +
Sbjct: 562 EIPWGAARLCFGSVEVTNQVVSFLRRKLITGEVLGETKLDLPPRTLRTRAVWWTVTEDQL 621
Query: 888 AVVEQNFSFRSG-LHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHP 946
N G LHAA HA + ++P++ C+ D+ H P + +YD HP
Sbjct: 622 DAARVNPEQLGGALHAAEHASIGMLPLFATCDRWDIGGVSVPLHPDTLLPT-VFVYDGHP 680
Query: 947 GGTGVSKQ 954
GG G +++
Sbjct: 681 GGAGFAER 688
>gi|145294438|ref|YP_001137259.1| hypothetical protein cgR_0393 [Corynebacterium glutamicum R]
gi|140844358|dbj|BAF53357.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 785
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 250/749 (33%), Positives = 393/749 (52%), Gaps = 55/749 (7%)
Query: 216 SQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVV 275
S+ + H+ + A KA V+ P + + + AL + GI+KL+SHQ ++ + G++VVV
Sbjct: 18 SESTLTHMVTLPASKAKYVDWPSWVPASLRDALVNRGINKLFSHQEQTAHLAWNGQHVVV 77
Query: 276 ATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDA--SIDI 333
AT TSSGKSL Y LP+L AL D ++ ALY+ PTKAL DQL + + + I+
Sbjct: 78 ATGTSSGKSLGYQLPILSALGTDPTACALYLTPTKALGSDQLTSTSTLLRDIPDFHPINP 137
Query: 334 GVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVY 393
YDGDT + R +RD +R + TNPDM+H S+L H +++R+L +L+
Sbjct: 138 APYDGDTPSEARSGIRDLSRFVFTNPDMVHASMLANHSRWARLLRHLK------------ 185
Query: 394 LIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHC 453
F+VIDE HAY+G FG + +++LRRL RL + YGS P+ + ++ATS++P H
Sbjct: 186 -------FIVIDECHAYRGVFGANVSMVLRRLLRLAA-FYGSHPTVILASATSSDPEIHA 237
Query: 454 MELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISE 513
L + ++ + DG+P ++ +LW P + + N A + +E
Sbjct: 238 SRLLG-APVKAVTEDGAPTGERTVLLWEP----------GFIEGAEGENGAPVRRAASTE 286
Query: 514 VSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETA-PHLVDSICVYRAGYVAEDR 572
+ + A ++ G R + F RSR+ E+V +E L P + YRAGY+AEDR
Sbjct: 287 AANIMATLISEGARTLTFVRSRRQAEIVALRAQEELSTLGRPDFARRVASYRAGYLAEDR 346
Query: 573 RRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSL 632
RR+ER G L GVA+TNALELGIDVG +D + GFPG++AS WQQAGR+GRR + SL
Sbjct: 347 RRLERLLDDGTLLGVASTNALELGIDVGGLDAVVTAGFPGTVASFWQQAGRAGRRGQGSL 406
Query: 633 AVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKY 692
V VA + P+D Y + +P L + P+E D N V+ H+ CAA+E PL+ + +
Sbjct: 407 VVLVARDEPMDTYLVHHPAALLEKPVEAAVFDPTNPHVIRGHVYCAAVEKPLTEV-EVAA 465
Query: 693 FGSGLS------SGITTLKNRGYLSSD-PSLDSSAKIFEYIGHEKMPSHTISIRAIESER 745
FG+ G+ + RG+ + + P + ++ H++ +S+R
Sbjct: 466 FGAQKVVEKLEIEGLLRKRPRGWFAVEKPMSEDPDELIPDSAHQQ-----VSLRGGSGSE 520
Query: 746 YEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFT 805
+ ++D+ +L I+ +KA Q + GAVY+HQG ++++ EL+L +AL + Y T
Sbjct: 521 FMIVDISDGRLLGTIDSAKAMSQTHPGAVYLHQGESFVIDELDLEENLALARPELPDYTT 580
Query: 806 KTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFY-RLWRGSGIIFDTV 864
R TDI ++ +A D + VT G+ RL G D
Sbjct: 581 YARSDTDIRIT---SAPLEDEVFDAGGGLWVANVEVQVTDRVTGYVTRL--SDGTTLDAT 635
Query: 865 ELYLPKYSYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLA 923
LYLP +++AV + P +++A+ LHAA HA + ++P+ C+ D+
Sbjct: 636 PLYLPPQILQTRAVAYTIDPLALEAMGIPAADIPGALHAAEHAAIGMLPLLATCDRWDIG 695
Query: 924 PECPNPHDSRYFPERILLYDRHPGGTGVS 952
H +P + +YD GG G +
Sbjct: 696 GVSTALHADTGYPT-VFVYDGMDGGAGFA 723
>gi|418461822|ref|ZP_13032883.1| helicase family protein with metal-binding cysteine cluster
[Saccharomonospora azurea SZMC 14600]
gi|359738070|gb|EHK86979.1| helicase family protein with metal-binding cysteine cluster
[Saccharomonospora azurea SZMC 14600]
Length = 735
Score = 411 bits (1056), Expect = e-111, Method: Compositional matrix adjust.
Identities = 253/718 (35%), Positives = 373/718 (51%), Gaps = 68/718 (9%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+ H+ D+ AR A + P + D +A+ +TG+ + + HQ E+ + +G NVVVAT T
Sbjct: 27 VTHIADLPARHARATDWPGWVPDAVLAAVTATGVDRPWEHQVEAASTAWSGHNVVVATGT 86
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDI-GV--- 335
SSGKSL Y LPVL L+ D ++ALY+ PTKALA DQLR++ + +D+ GV
Sbjct: 87 SSGKSLAYQLPVLSRLATDGRATALYLSPTKALAGDQLRSV--------SDMDVQGVRPV 138
Query: 336 -YDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYL 394
YDGDT Q +R W+RD+AR + TNPDMLH ILP H +++R
Sbjct: 139 RYDGDTPQSERGWVRDHARWVFTNPDMLHRGILPAHPRWARF------------------ 180
Query: 395 IFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCM 454
F + +VV+DE H Y+G FG H AL+LRRL R+ YG+DP FV ++AT+A P E
Sbjct: 181 -FRGLSYVVVDECHGYRGVFGSHVALLLRRLRRIAR-RYGADPVFVLASATTAEPAEFAG 238
Query: 455 ELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEV 514
L + + +D SP + LW P +L + + N A S +E
Sbjct: 239 RLLGADCVA-VTDDASPHGARTVALWEP-----PLLGELAGE-----NDAPVRRSAGAEA 287
Query: 515 SYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRR 574
+ + AE+V G R +AF RSR+ EL + IL E AP L D + YRAGY+ E+RR
Sbjct: 288 ARILAELVIEGARTLAFVRSRRGAELTALGAQRILAEVAPELADKVAAYRAGYLPEERRA 347
Query: 575 IERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAV 634
+E G+L GVA TNALELG+D+ +D + G+PG++AS WQQ+GR+GR +L V
Sbjct: 348 LESALLDGELLGVATTNALELGVDISGLDAVVIAGYPGTLASFWQQSGRAGRAGDDALVV 407
Query: 635 YVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFG 694
+VA + PLD Y +P+ L + P+E +D N VL HL CAA E L++ + + G
Sbjct: 408 FVARDDPLDTYLAHHPKALLERPVEAAVLDPTNPYVLAPHLACAAAESALTVKELDDFGG 467
Query: 695 SGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN 754
S + L L PS Y P + IR E+ V++ ++
Sbjct: 468 HAARSVLDGLVADSLLRRRPS-------GWYWTSRDRPHSDVDIRGSGVEQVAVVEADTS 520
Query: 755 EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIH 814
+L ++ + A V+ GAVY+H+G +Y+V EL+L IA D ++ T RD DI
Sbjct: 521 RLLGTVDGAAACGTVHPGAVYLHRGESYVVDELDLEQGIAFVHAEDPEWSTSARDVVDIE 580
Query: 815 VSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYE 874
+ + K T VT+ G+ R SG + D V L LP+
Sbjct: 581 I-------LDTVEKRTYGGVTVNLGYVAVTSRVVGYLRRLP-SGEVLDHVPLDLPEQVLH 632
Query: 875 SQAVWIQVPQSVKAVVEQNFSFRSG---------LHAASHALLHVVPIYVRCNFSDLA 923
++AVW + + + ++ R+G LHAA HA + ++P++ C+ D+
Sbjct: 633 TRAVWYTIAEPLLCGADEGPGTRTGVEPARVPGALHAAEHAAIGLLPLFATCDRWDIG 690
>gi|229494797|ref|ZP_04388553.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
gi|229318293|gb|EEN84158.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length = 762
Score = 411 bits (1056), Expect = e-111, Method: Compositional matrix adjust.
Identities = 251/744 (33%), Positives = 394/744 (52%), Gaps = 55/744 (7%)
Query: 215 GSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVV 274
GS+ ++ + AR A E P+ + + AL + + HQ+E+ + AGK+VV
Sbjct: 12 GSEKPLMFTAQLPARVAEFTEWPEWVHPSVVRALAEHSVRSPWIHQSEAADLAYAGKHVV 71
Query: 275 VATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDA---SI 331
VAT T+SGKSL Y LPVL A++ D ++ALY+ PTKAL DQLRA+L++T FD S
Sbjct: 72 VATGTASGKSLAYQLPVLTAMATDPLATALYLSPTKALGSDQLRAVLSLTD-FDVELRST 130
Query: 332 DIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTE 391
+ YDGDT+Q+ R W R+N+R L TNPDM+H+S+L H +++ NL+
Sbjct: 131 NASAYDGDTSQELRTWARENSRWLFTNPDMIHISLLRTHQRWAHFFRNLK---------- 180
Query: 392 VYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPRE 451
+V+IDE H+Y+G FG + AL++RRL R+ + YG++P+F+ ++AT+A+P
Sbjct: 181 ---------YVIIDECHSYRGVFGSNVALVIRRLRRIAA-RYGAEPTFILASATTADPGA 230
Query: 452 HCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPI 511
L E+ + DGSP + LW P L ++ ++ + + R A
Sbjct: 231 AASRLIGAHCTEVTE-DGSPHGPRTVALWEP-PLLEALTGENGSPV---RRPAG------ 279
Query: 512 SEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAED 571
+E + + A+++ G R + F RSR+ EL T+ +L E P L + + YRAGY+AED
Sbjct: 280 AEAARIMADLMIEGARTLTFVRSRRGAELTAMATKRLLAEVDPDLAERVASYRAGYLAED 339
Query: 572 RRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPS 631
RR +E G L G A TNALELG+D+ +D + GFPG++AS WQQAGRSGRR S
Sbjct: 340 RRELEAALADGTLLGAATTNALELGVDIAGLDAVVVAGFPGTVASFWQQAGRSGRRGEGS 399
Query: 632 LAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEK 691
L V +A + PLD Y + +P + P+E D N VL L+CAA+E PLS D +
Sbjct: 400 LVVLIARDDPLDTYLVHHPSAVLDKPVEATVTDPGNPYVLGPQLLCAAMELPLS---DAE 456
Query: 692 YFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDM 751
G +T L G + K ++ + P ++ IR + ++D
Sbjct: 457 VDAFGALEVLTRLSEEGKIRRR-------KHGWFVTADSNPHGSLDIRGGIGTQVAIVDG 509
Query: 752 QSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYT 811
+S +L ++ +A V+ GAV++HQG TY+V EL+L +AL + + T R+ T
Sbjct: 510 ESGRMLGTVDAGRAPATVHPGAVHIHQGETYVVDELDLDVGLALVHTENPDWTTSARETT 569
Query: 812 DIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKY 871
+I ++ ++ + VT G+ R SG + D++EL +P +
Sbjct: 570 EITIT-------EQLEHKNYGDIAVALVQVEVTHQVVGYLRRLT-SGEVLDSIELDMPAH 621
Query: 872 SYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPH 930
+ ++AV V P+ ++++ F LHAA HA + ++P+ C+ D+ H
Sbjct: 622 TLPTRAVMYTVTPELLESIGVPPERFPGSLHAAEHAAIGLLPLVAICDRGDIGGVSTAMH 681
Query: 931 DSRYFPERILLYDRHPGGTGVSKQ 954
P + +YD H GG G + +
Sbjct: 682 ADTGLPT-VFVYDGHAGGAGFADR 704
>gi|345000554|ref|YP_004803408.1| hypothetical protein SACTE_2999 [Streptomyces sp. SirexAA-E]
gi|344316180|gb|AEN10868.1| Protein of unknown function DUF1998 [Streptomyces sp. SirexAA-E]
Length = 838
Score = 411 bits (1056), Expect = e-111, Method: Compositional matrix adjust.
Identities = 265/767 (34%), Positives = 389/767 (50%), Gaps = 61/767 (7%)
Query: 199 SQLLPLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYS 258
S+ P +++ L G ++ H E + R+ PD + +A+ GI ++
Sbjct: 43 SRPSPAVVLDRLAAGASRAARITHTEHLPPREGSHATWPDRIRPEVVAAIGRAGIDHPWT 102
Query: 259 HQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL------SHDLSSSALYMFPTKAL 312
HQA + +L G++VV+AT T+SGKSL Y PVL AL + ++ALY+ PTKAL
Sbjct: 103 HQATAAGYALDGESVVIATGTASGKSLAYLAPVLSALLDGSQAPNGRGATALYLAPTKAL 162
Query: 313 AQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQ 372
A DQ RA+ A+ + ++ VYDGDT ++R W+R A ++TNPDMLH ILP H +
Sbjct: 163 AADQRRAVKALAEPLGTAVRPAVYDGDTPVEEREWVRQYANYVLTNPDMLHRGILPSHPR 222
Query: 373 FSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHV 432
++ L LR FVVIDE H Y+G FG H A +LRRL RLC+
Sbjct: 223 WASFLRALR-------------------FVVIDECHTYRGVFGSHVAQVLRRLRRLCAR- 262
Query: 433 YGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNK 492
YGSDP F+ ++AT+A P L L E + +D SP + +F LW P
Sbjct: 263 YGSDPVFLLASATAARPSVAAGHLTGLPVRE-VADDASPRGEMVFALWEP---------- 311
Query: 493 SQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEET 552
T++ R A + ++ +E + L ++ G+R +AF RSR+ ELV +E L E
Sbjct: 312 PLTELHGERGAPVRRTA-TAETADLLTDLTLQGVRTVAFVRSRRGAELVSVIAKERLAEV 370
Query: 553 APHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPG 612
L + YR GY+ E+RR +ER G+L G+AAT ALELGIDV +D + G+PG
Sbjct: 371 DRSLPGRVAAYRGGYLPEERRALERALHSGELLGLAATTALELGIDVSGLDAVVIAGYPG 430
Query: 613 SIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLE 672
+ ASLWQQAGR+GR + +LAV VA + PLD Y + +PE LF+ P+E +D N VL
Sbjct: 431 TRASLWQQAGRAGRSGQGALAVLVARDDPLDTYLVHHPEALFQQPVESTVLDPDNPYVLA 490
Query: 673 QHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMP 732
HL AA E PL+ D FG + + L+ L A + + E+
Sbjct: 491 PHLCAAAAELPLTEA-DIALFGPAVPELLPQLEAAKLLR------RRATGWHWTRRERAA 543
Query: 733 SHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSK 792
T IR ++++ + +L ++ES A V+EGAV++HQG TYLV++L+L
Sbjct: 544 DLT-DIRGGGGRPVQIVEEGTGRLLGTVDESAAHTAVHEGAVHLHQGRTYLVRKLDLRDS 602
Query: 793 IALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQAL---ACTVTTTWFG 849
+AL ++A Y T RD T I V + D L + VT
Sbjct: 603 VALVEEAVPPYSTTARDTTAIAV----------LETDTEIPWGGGRLCFGSVEVTNQVVS 652
Query: 850 FYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSG-LHAASHALL 908
F R +G + +L LP + ++AVW V + G LHAA HA +
Sbjct: 653 FLRRRLITGEVLGETKLDLPPRTLRTRAVWWTVTEDQLDAARIGPEILGGALHAAEHASI 712
Query: 909 HVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
++P++ C+ D+ H P + +YD HPGG G +++
Sbjct: 713 GMLPLFATCDRWDIGGVSVPLHPDTLLPT-VFVYDGHPGGAGFAERA 758
>gi|158521964|ref|YP_001529834.1| DEAD/DEAH box helicase domain-containing protein [Desulfococcus
oleovorans Hxd3]
gi|158510790|gb|ABW67757.1| DEAD/DEAH box helicase domain protein [Desulfococcus oleovorans
Hxd3]
Length = 959
Score = 411 bits (1056), Expect = e-111, Method: Compositional matrix adjust.
Identities = 259/747 (34%), Positives = 388/747 (51%), Gaps = 82/747 (10%)
Query: 218 GQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVAT 277
G++V+ + A +V PD + LY+HQA++I L+G+NVV AT
Sbjct: 22 GEVVYHTALDPVPARMVRKPDWGVPEAACLSAILATEGLYAHQADAIGRVLSGENVVAAT 81
Query: 278 MTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL--LAMTKAFDASIDIGV 335
T+SGK+L YN+PVL+ L + S+ ALY++P KALA+DQLRAL A ++ +
Sbjct: 82 PTASGKTLIYNIPVLQRLKENPSARALYLYPLKALARDQLRALQETAGAAGMAEAVSAAI 141
Query: 336 YDGDTTQKDRMWLRDNA-RLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYL 394
YDGDTT R +RDN +L+TNPDMLH+ +LPYH + +NL
Sbjct: 142 YDGDTTAWHRKKIRDNPPSVLMTNPDMLHLGLLPYHETWHTFFANLA------------- 188
Query: 395 IFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCM 454
FVVIDE H Y+G G H A + RRL R+C+H +G+ P FV +AT ANP E
Sbjct: 189 ------FVVIDEIHTYRGVMGSHMAHVFRRLYRVCTH-HGAAPLFVAGSATIANPEELAG 241
Query: 455 ELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEV 514
+L T + ++ G+P ++ V NP + P++
Sbjct: 242 QLTGRPTTAVTKS-GAPRGKRHVVFMNPVT------------------------GPVATT 276
Query: 515 SYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRR 574
L + GLR I + +SRKL EL+ + E+ +PH I YRAG++ ++RR
Sbjct: 277 IQLLRAALYRGLRTIVYTQSRKLAELISIWA----EKKSPH-AHQISSYRAGFLPDERRE 331
Query: 575 IERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAV 634
IER G+L V +T+ALELGID+G +D+ L +G+PGS+ + WQ+ GR GR + S +
Sbjct: 332 IERKLSAGELLAVISTSALELGIDIGDLDLCLLVGYPGSVMATWQRGGRVGRAGQESAMI 391
Query: 635 YVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYF- 693
+A E LDQYFM+ P P E I+ N ++E+HLVCAA EH L + DE +
Sbjct: 392 LIAGEDALDQYFMRNPGAFLSLPPEAAVINPDNPAIVEKHLVCAAAEHRLRV--DEPFLQ 449
Query: 694 GSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQS 753
G+ + + TL+ +G L L S+ ++ + K P + +R ++VI Q+
Sbjct: 450 GAAMQRAVATLEKKGEL-----LRSADGMYLF-ASRKRPHREVDLRG-AGRSFKVICDQT 502
Query: 754 NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDI 813
+ + +I+ + F + GAVY+H G T++VK L++ + + + + Y+TK R D
Sbjct: 503 GDHIGDIDGMRVFRDAHPGAVYLHMGQTHVVKNLDVGAMRVIVSRQPVNYYTKPRSTKD- 561
Query: 814 HVSGGNNAYATKISKDQLTKTTAQALACT----VTTTWFGFYRLWRGSGIIFDTVE-LYL 868
T+I + TK A CT VT T G Y WR G +VE L L
Sbjct: 562 ----------TEILETFQTKQVAGITVCTGRLRVTETITG-YEKWRLYGKRRVSVEPLDL 610
Query: 869 PKYSYESQAVWIQVPQSVKAVVEQNFS-FRSGLHAASHALLHVVPIYVRCNFSDLAPECP 927
P +E+Q VW+ +P ++ E + F G+HA HA++ V+PI+V C+ +DL
Sbjct: 611 PPLVFETQGVWLAIPDRIQDAAESEYRHFMGGIHAIEHAVIGVLPIFVMCDRNDLGGISM 670
Query: 928 NPHDSRYFPERILLYDRHPGGTGVSKQ 954
H P I +YD GG G+S+Q
Sbjct: 671 TFHPQVGTPV-IFIYDAVAGGIGLSRQ 696
>gi|375362735|ref|YP_005130774.1| hypothetical protein BACAU_2045 [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|371568729|emb|CCF05579.1| hypothetical protein BACAU_2045 [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
Length = 748
Score = 411 bits (1056), Expect = e-111, Method: Compositional matrix adjust.
Identities = 248/756 (32%), Positives = 401/756 (53%), Gaps = 68/756 (8%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E+++ L+ + +VH + R+A + +P+ + N ++AL+ GI +L++HQ +
Sbjct: 8 ELIQELK----NHENIVHWHEEEPREAKTMPMPEQVDPNIRAALEKRGIERLFTHQYSAF 63
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
G+++V T T+SGK+LCYNLPVL++++ D SS ALY+FPTKALAQDQ L +
Sbjct: 64 QTVQNGESIVAVTPTASGKTLCYNLPVLQSIAEDASSRALYLFPTKALAQDQKSELNEII 123
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
I YDGDT+ R +R ++ITNPDMLH +ILP+H ++ + NL
Sbjct: 124 DETGMDIKSFTYDGDTSPAIRQKVRKAGHIVITNPDMLHSAILPHHTKWVSLFENL---- 179
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
+++VIDE H Y+G FG H A ++RRL R+C+ YGS PSF+ ++A
Sbjct: 180 ---------------KYIVIDELHTYRGVFGSHVANVIRRLMRICA-FYGSKPSFICTSA 223
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T ANPRE +L S + LI ++G+P +K F +NP ++NK
Sbjct: 224 TIANPRELAEQLTGKS-VRLIDDNGAPAGRKHFAFYNP-----PIVNKP----------L 267
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYR 564
+ S EV+ L +++ ++ I F RSR E++LS+ +EI+++ S+ YR
Sbjct: 268 HIRKSATVEVNELAKTFLKNKIQTIVFARSRVRVEIILSHIQEIVKKEIG--AKSVRGYR 325
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
GY+ ++RR IER G + GV +TNALELG+D+G + V + G+PGS+AS WQQAGR+
Sbjct: 326 GGYLPKERREIERGLRDGSILGVVSTNALELGVDIGQLQVCVMTGYPGSVASAWQQAGRA 385
Query: 625 GRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
GRR+ +L V VA P+DQY +++P+ FK E I+ N +L HL CAA E P
Sbjct: 386 GRRQGEALIVMVANSDPIDQYIVRHPDYFFKRSPESARINPDNLIILVDHLKCAAYELPF 445
Query: 685 SLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESE 744
++ FG + I YL + L + + + + E P+ IS+R+ E
Sbjct: 446 RA---DETFGENDARDILE-----YLEEEGVLHENRERYHW-ASESFPASNISLRSASQE 496
Query: 745 RYEVIDMQSN---EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADL 801
++D +++ E++ A +++ A+Y+H+G Y V++L+ K A +K D+
Sbjct: 497 NVVIVDRSETADVKIIGEMDRFSAMTLLHDEAIYLHEGVQYQVEKLDWDHKKAYVRKVDV 556
Query: 802 KYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIF 861
+Y+T + V + + K + T AL + GSG I
Sbjct: 557 EYYTDANLAVQLKVLDIDRTDSRKKTALHFGDVTVNALPTIFKKIKMTTFENI-GSGPI- 614
Query: 862 DTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSD 921
+LP+ + A W+++ ++ + E+ + L +H L H+VP+YV C+ +D
Sbjct: 615 -----HLPEEELHTSAAWLELKETDSEIGEK--TLEQLLLGIAHVLQHIVPVYVMCDRND 667
Query: 922 --LAPECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
+ P+ H P I LYD +PGG G++ +V
Sbjct: 668 VHVVPQIKAAHTG--LPT-IFLYDHYPGGIGLADEV 700
>gi|319651292|ref|ZP_08005422.1| YprA protein [Bacillus sp. 2_A_57_CT2]
gi|317397072|gb|EFV77780.1| YprA protein [Bacillus sp. 2_A_57_CT2]
Length = 766
Score = 411 bits (1056), Expect = e-111, Method: Compositional matrix adjust.
Identities = 249/743 (33%), Positives = 393/743 (52%), Gaps = 68/743 (9%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+VH I ++A +P+ + + AL+ GI++LY+HQ S ++ G ++V T T
Sbjct: 24 IVHWHTIEEKEAKTAGLPEDIHPSLIEALQKRGITRLYTHQKTSYQTAMNGDSLVAVTPT 83
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGD 339
+SGK+LCYNLPVL+ + +D + ALYMFPTKALAQDQ + + + I+ YDGD
Sbjct: 84 ASGKTLCYNLPVLQTIVNDPDARALYMFPTKALAQDQKSEINEIIQESGLDINSYTYDGD 143
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T R +R ++ITNPDMLH +ILP+H ++ + NL
Sbjct: 144 TPANIRQKVRRAGHVVITNPDMLHSAILPHHTKWVSLFENL------------------- 184
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
++VVIDE H Y+G FG H A ++RRL R+C YGSDP F+ ++AT ANP E +L
Sbjct: 185 KYVVIDELHIYRGVFGSHVANVIRRLRRIC-RFYGSDPIFICTSATIANPLELAEKLTE- 242
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
++L+ N+G+P +K FV +NP ++NK N SP E L
Sbjct: 243 KPMKLVDNNGAPSGKKHFVFYNP-----PIVNK----------PLNIRRSPTLEARKLAG 287
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILE-ETAPHLVDSICVYRAGYVAEDRRRIERD 578
E++++ ++ I F RSR E++L+Y +E+++ + P +I YR GY+ RR IE+
Sbjct: 288 ELLKNKIQTIVFARSRVRVEILLTYLQELVKHKLGP---KAIRGYRGGYLPTQRREIEKG 344
Query: 579 FFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAF 638
G++ GV +TNALELG+D+G + V + G+PG+IAS WQQAGR+GRR SL + VA
Sbjct: 345 LRSGEIYGVVSTNALELGVDIGQLQVCIMTGYPGTIASSWQQAGRAGRRHGESLVIMVAS 404
Query: 639 EGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLS 698
PLDQY ++ P+ F E I+ N +L H+ CAA E P F +G
Sbjct: 405 SSPLDQYVIQNPDYFFNKSPETARINPDNLIILVDHIKCAAYELP---------FNAGER 455
Query: 699 SG-ITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVI---DMQSN 754
G T + YL+ + L + F Y + P+H IS+R+ E +I D+ +
Sbjct: 456 FGTFETEEVLEYLAEERVLHQNGDKF-YWMKDSFPAHNISLRSASQENVVIIDQSDIANV 514
Query: 755 EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIH 814
+V+ E++ A ++E A+Y+HQG + V+ L+ K A ++ D+ YFT ++
Sbjct: 515 KVIGEMDRFSAMTLLHEEAIYLHQGTQFQVEMLDWEEKKAFVREVDVDYFTDANLAVELK 574
Query: 815 VSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYE 874
V + ++ I + + A+A F + GSG I LP+
Sbjct: 575 VLEQDKLRSSTIGEVGFGDVSVVAMATIFKKIKFETHENI-GSGPI------TLPEEELH 627
Query: 875 SQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSD--LAPECPNPHDS 932
+ + W+ + +++ + GL +HAL H+VP++V C+ D + P+ H+
Sbjct: 628 TSSTWLSFNK--ESLNYKQDRLEQGLIGTAHALKHIVPLFVMCDPQDVHVVPQVKAAHNE 685
Query: 933 RYFPERILLYDRHPGGTGVSKQV 955
+ I YDR+PGG G+S+++
Sbjct: 686 K---PTIFFYDRYPGGVGLSEKI 705
>gi|347753393|ref|YP_004860958.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
coagulans 36D1]
gi|347585911|gb|AEP02178.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 36D1]
Length = 751
Score = 410 bits (1055), Expect = e-111, Method: Compositional matrix adjust.
Identities = 250/744 (33%), Positives = 384/744 (51%), Gaps = 66/744 (8%)
Query: 217 QGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVA 276
Q ++VH I + AV V P ++ SAL+ GIS LY+HQAE+ ++AGK+
Sbjct: 6 QERIVHWHTIEGKPAVTVPFPGSITPAVLSALEKRGISSLYTHQAEAYRLAMAGKDFTAV 65
Query: 277 TMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVY 336
T T+SGK+LCYNLPVLE + + + ALYMFPTKALAQDQ + + + ++ Y
Sbjct: 66 TPTASGKTLCYNLPVLETILQNPDARALYMFPTKALAQDQKSEINEIIEEAGVPVNSYTY 125
Query: 337 DGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIF 396
DGDT R +R ++ITNPDMLH +ILP+H ++ NL
Sbjct: 126 DGDTPSNIRQRVRKAGHIVITNPDMLHSAILPHHTKWVSFFENL---------------- 169
Query: 397 LFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMEL 456
RFVVIDE H Y+G FG H A +LRRL R+C + YGSDP F+ ++AT NP+E +L
Sbjct: 170 ---RFVVIDELHIYRGVFGSHVANVLRRLKRICRY-YGSDPVFICTSATIQNPKELAEKL 225
Query: 457 ANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSY 516
+ELI +G+P K F+ +NP ++NK N S EV
Sbjct: 226 TG-KKMELIDQNGAPSGTKHFLFYNP-----PLVNKP----------LNIRRSATLEVRK 269
Query: 517 LFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIE 576
+ E++++ ++ I F RSR E++L Y +E++++ SI YR GY+ +RR+IE
Sbjct: 270 IAGELLKNKIQTIVFARSRVRVEIILKYLQELVKDELGE--KSIMGYRGGYLPTERRKIE 327
Query: 577 RDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYV 636
+ G + G+ +TNALELG+D+G + V + G+PG+IAS WQQAGR+GRR+ SL + V
Sbjct: 328 QGLRNGDIYGIVSTNALELGVDIGQLQVCIMTGYPGTIASAWQQAGRAGRRQGESLVILV 387
Query: 637 AFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSG 696
A PLDQY ++ P F E I+ N +L H+ CAA E P F G
Sbjct: 388 AGSSPLDQYIIRNPGFFFNRSPETARINPDNLVILVDHVKCAAYELP---------FKKG 438
Query: 697 LSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN-- 754
+ G +++ +D + Y ++ P+H IS+R+ E +IDM
Sbjct: 439 ETFGNVEIEDVLEFLADERILHRRGDAWYWMNDAFPAHNISLRSASQENVVIIDMTHAPD 498
Query: 755 -EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDI 813
V+ E+++ A ++E A+Y+HQ Y V++L+ K A ++ + Y+T ++
Sbjct: 499 VRVIGEMDQFSAMTLLHEEAIYLHQAVQYQVEKLDWEEKKAFVREVAVDYYTDANLAVEL 558
Query: 814 HVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSY 873
V + + + +A+ F + GSG I +LP+
Sbjct: 559 KVLEQDRKTVLQDAIIGYGDVMVRAMPTIFKKIKFNTHENI-GSGPI------HLPEMEL 611
Query: 874 ESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDL--APECPNPHD 931
+ AVW + + V ++ L A+HAL + P++ C+ D+ P+ HD
Sbjct: 612 HTNAVWFSMGED---AVPKHL-LEGALTGAAHALQSIAPLFAMCDAHDIQAVPQVKAIHD 667
Query: 932 SRYFPERILLYDRHPGGTGVSKQV 955
+ I LYDR+PGG G+S+++
Sbjct: 668 EK---PTIFLYDRYPGGIGLSEKI 688
>gi|385265194|ref|ZP_10043281.1| DEAD/DEAH box helicase [Bacillus sp. 5B6]
gi|385149690|gb|EIF13627.1| DEAD/DEAH box helicase [Bacillus sp. 5B6]
Length = 748
Score = 410 bits (1055), Expect = e-111, Method: Compositional matrix adjust.
Identities = 248/756 (32%), Positives = 401/756 (53%), Gaps = 68/756 (8%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E+++ L+ + +VH + R+A + +P+ + N ++AL+ GI +L++HQ +
Sbjct: 8 ELIQELK----NHENIVHWHEEEPREAKTMPMPEQVDPNIRTALEKRGIERLFTHQYSAF 63
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
G+++V T T+SGK+LCYNLPVL++++ D SS ALY+FPTKALAQDQ L +
Sbjct: 64 QTVQNGESIVAVTPTASGKTLCYNLPVLQSIAEDASSRALYLFPTKALAQDQKSELNEII 123
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
I YDGDT+ R +R ++ITNPDMLH +ILP+H ++ + NL
Sbjct: 124 DETGMDIKSFTYDGDTSPAIRQKVRKAGHIVITNPDMLHSAILPHHTKWVSLFENL---- 179
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
+++VIDE H Y+G FG H A ++RRL R+C+ YGS PSF+ ++A
Sbjct: 180 ---------------KYIVIDELHTYRGVFGSHVANVIRRLMRICA-FYGSTPSFICTSA 223
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T ANPRE +L S + LI ++G+P +K F +NP ++NK
Sbjct: 224 TIANPRELAEQLTGKS-VRLIDDNGAPAGRKHFAFYNP-----PIVNK----------PL 267
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYR 564
+ S EV+ L +++ ++ I F RSR E++LS+ +EI+++ S+ YR
Sbjct: 268 HIRKSATVEVNELAKTFLKNKIQTIVFARSRVRVEIILSHIQEIVKKEIG--AKSVRGYR 325
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
GY+ ++RR IER G + GV +TNALELG+D+G + V + G+PGS+AS WQQAGR+
Sbjct: 326 GGYLPKERREIERGLRDGSILGVVSTNALELGVDIGQLQVCVMTGYPGSVASAWQQAGRA 385
Query: 625 GRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
GRR+ +L V VA P+DQY +++P+ FK E I+ N +L HL CAA E P
Sbjct: 386 GRRQGEALIVMVANSDPIDQYIVRHPDYFFKRSPESARINPDNLIILVDHLKCAAYELPF 445
Query: 685 SLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESE 744
++ FG + I YL + L + + + + E P+ IS+R+ E
Sbjct: 446 RA---DETFGENDARDILE-----YLEEEGVLHENRERYHW-ASESFPASNISLRSASQE 496
Query: 745 RYEVIDMQSN---EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADL 801
++D +++ E++ A +++ A+Y+H+G Y V++L+ K A +K D+
Sbjct: 497 NVVIVDRSETADVKIIGEMDRFSAMTLLHDEAIYLHEGVQYQVEKLDWDHKKAYVRKVDV 556
Query: 802 KYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIF 861
+Y+T + V + + K + T AL + GSG I
Sbjct: 557 EYYTDANLAVQLKVLDIDRTDSRKKTALHFGDVTVNALPTIFKKIKMTTFENI-GSGPI- 614
Query: 862 DTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSD 921
+LP+ + A W+++ ++ + E+ + L +H L H+VP+YV C+ +D
Sbjct: 615 -----HLPEEELHTSAAWLELKETDSEIGEK--TLEQLLLGIAHVLQHIVPVYVMCDRND 667
Query: 922 --LAPECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
+ P+ H P I LYD +PGG G++ +V
Sbjct: 668 VHVVPQIKAAHTG--LP-TIFLYDHYPGGIGLADEV 700
>gi|421731281|ref|ZP_16170407.1| hypothetical protein WYY_09329 [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|407075435|gb|EKE48422.1| hypothetical protein WYY_09329 [Bacillus amyloliquefaciens subsp.
plantarum M27]
Length = 748
Score = 410 bits (1055), Expect = e-111, Method: Compositional matrix adjust.
Identities = 248/756 (32%), Positives = 401/756 (53%), Gaps = 68/756 (8%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E+++ L+ + +VH + R+A + +P+ + N ++AL+ GI +L++HQ +
Sbjct: 8 ELIQELK----NHENIVHWHEEEPREAKTMPMPEQVDPNIRAALEKRGIERLFTHQYSAF 63
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
G+++V T T+SGK+LCYNLPVL++++ D SS ALY+FPTKALAQDQ L +
Sbjct: 64 QTVQNGESIVAVTPTASGKTLCYNLPVLQSIAEDASSRALYLFPTKALAQDQKSELNEII 123
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
I YDGDT+ R +R ++ITNPDMLH +ILP+H ++ + NL
Sbjct: 124 DETGMDIKSFTYDGDTSPAIRQKVRKAGHIVITNPDMLHSAILPHHTKWVSLFENL---- 179
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
+++VIDE H Y+G FG H A ++RRL R+C+ YGS PSF+ ++A
Sbjct: 180 ---------------KYIVIDELHTYRGVFGSHVANVIRRLMRICA-FYGSKPSFICTSA 223
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T ANPRE +L S + LI ++G+P +K F +NP ++NK
Sbjct: 224 TIANPRELAEQLTGKS-VRLIDDNGAPAGRKHFAFYNP-----PIVNK----------PL 267
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYR 564
+ S EV+ L +++ ++ I F RSR E++LS+ +EI+++ S+ YR
Sbjct: 268 HIRKSATVEVNELAKTFLKNKIQTIVFARSRVRVEIILSHIQEIVKKEIGS--KSVRGYR 325
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
GY+ ++RR IER G + GV +TNALELG+D+G + V + G+PGS+AS WQQAGR+
Sbjct: 326 GGYLPKERREIERGLRDGSILGVVSTNALELGVDIGQLQVCVMTGYPGSVASAWQQAGRA 385
Query: 625 GRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
GRR+ +L V VA P+DQY +++P+ FK E I+ N +L HL CAA E P
Sbjct: 386 GRRQGEALIVMVANSDPIDQYIVRHPDYFFKRSPESARINPDNLIILVDHLKCAAYELPF 445
Query: 685 SLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESE 744
++ FG + I YL + L + + + + E P+ IS+R+ E
Sbjct: 446 RA---DETFGENDARDILE-----YLEEEGVLHENRERYHW-ASESFPASNISLRSASQE 496
Query: 745 RYEVIDMQSN---EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADL 801
++D +++ E++ A +++ A+Y+H+G Y V++L+ K A +K D+
Sbjct: 497 NVVIVDRSETADVKIIGEMDRFSAMTLLHDEAIYLHEGVQYQVEKLDWDHKKAYVRKVDV 556
Query: 802 KYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIF 861
+Y+T + V + + K + T AL + GSG I
Sbjct: 557 EYYTDANLAVQLKVLDIDRTDSRKKTALHFGDVTVNALPTIFKKIKMTTFENI-GSGPI- 614
Query: 862 DTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSD 921
+LP+ + A W+++ ++ + E+ + L +H L H+VP+YV C+ +D
Sbjct: 615 -----HLPEEELHTSAAWLELKETDSEIGEK--TLEQLLLGIAHVLQHIVPVYVMCDRND 667
Query: 922 --LAPECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
+ P+ H P I LYD +PGG G++ +V
Sbjct: 668 VHVVPQIKAAHTG--LPT-IFLYDHYPGGIGLADEV 700
>gi|436840876|ref|YP_007325254.1| DEAD/DEAH box helicase domain protein [Desulfovibrio hydrothermalis
AM13 = DSM 14728]
gi|432169782|emb|CCO23153.1| DEAD/DEAH box helicase domain protein [Desulfovibrio hydrothermalis
AM13 = DSM 14728]
Length = 939
Score = 410 bits (1055), Expect = e-111, Method: Compositional matrix adjust.
Identities = 254/742 (34%), Positives = 380/742 (51%), Gaps = 73/742 (9%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATM 278
Q+VH I KA E + S L I +LYSHQAE+ + AG+NVVVAT
Sbjct: 4 QVVHHRLIDGCKASYGEPRHKFSPSVNSLLDFRNIKQLYSHQAEATDYARAGRNVVVATP 63
Query: 279 TSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASI--DIGVY 336
T+SGK+L YNLPV+E D S ALY+FP KALAQDQL+ MT ++ + VY
Sbjct: 64 TASGKTLTYNLPVIEQCLRDPDSHALYLFPLKALAQDQLKTFNEMTALLPETVRPEAAVY 123
Query: 337 DGDTTQKDRMWLRDNA-RLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLI 395
DGDTT R +RDN +++TNP+MLH+S+LPYH ++S L+ L
Sbjct: 124 DGDTTPYKRKKIRDNPPAVILTNPEMLHLSMLPYHERWSPFLAGLT-------------- 169
Query: 396 FLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCME 455
+V+DE H Y+G G H A++ RRL R+C YG+DPSFVFS+AT NP E C
Sbjct: 170 -----HIVVDEVHTYRGVMGSHMAMVFRRLLRIC-RFYGADPSFVFSSATVGNPAELCRS 223
Query: 456 LANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVS 515
L L + I G+ ++ F+ +NP SP S
Sbjct: 224 LTGLD-IHAITESGAASGKRNFIFFNPVV------------------------SPYSAAI 258
Query: 516 YLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRI 575
L + GLR I + +SRK+ EL+ + + E A D I YRAG++ E+RR I
Sbjct: 259 QLLKAGLARGLRTIVYTQSRKMTELISMW----VNEKAGEYKDRISAYRAGFLPEERREI 314
Query: 576 ERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVY 635
E+ G+L V +T+ALELGID+G +D+ + +G+PGS+ + Q+ GR GR +R S +
Sbjct: 315 EQKMSSGELLAVISTSALELGIDIGGLDLCILVGYPGSVMATLQRGGRVGRSQRESAVIL 374
Query: 636 VAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYF-- 693
+A E LDQYFM++PE F P E ++ N ++++HLVCAA E L D+ Y
Sbjct: 375 IAQEDALDQYFMRHPEDFFSRPPENAVLNPYNPVIMQRHLVCAACELTLR---DDDYLLK 431
Query: 694 GSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQS 753
+ S + L+ G L + D E K P +S+R S + + D +
Sbjct: 432 DDQIKSRVHQLEKEGVLLRNKRGD------EIYSTRKRPHREVSLRGAGSTLH-IEDTAT 484
Query: 754 NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDI 813
+ ++ I+E +A+ + +EGAVY+H+G TY +KEL+L S+ K + Y+T+ R
Sbjct: 485 SALIGTIDEVRAYSEAHEGAVYIHRGSTYCIKELDLGSRKVRAAKERVGYYTRARKNKST 544
Query: 814 HVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSY 873
+ S+ ++ + VT G+ + G + V L +P +
Sbjct: 545 EI-------LEIYSQKKVFGIVMRFGRLKVTEQVTGYEKRAVKGGKLLGIVSLDMPPVVF 597
Query: 874 ESQAVWIQVPQSVKAVVEQNF-SFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDS 932
E+Q +W+++ +K E F F G+HA HA + ++P+ V + +DL H+
Sbjct: 598 ETQGLWMEISSEIKRRSEDEFIHFMGGIHAVEHAAIGILPLLVLTDRNDLGGISTPMHEQ 657
Query: 933 RYFPERILLYDRHPGGTGVSKQ 954
P + +YD PGG G++ Q
Sbjct: 658 VDGPA-VFIYDGIPGGAGLTMQ 678
>gi|451346594|ref|YP_007445225.1| hypothetical protein KSO_009235 [Bacillus amyloliquefaciens IT-45]
gi|449850352|gb|AGF27344.1| hypothetical protein KSO_009235 [Bacillus amyloliquefaciens IT-45]
Length = 748
Score = 410 bits (1055), Expect = e-111, Method: Compositional matrix adjust.
Identities = 248/756 (32%), Positives = 401/756 (53%), Gaps = 68/756 (8%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E+++ L+ + +VH + R+A + +P+ + N ++AL+ GI +L++HQ +
Sbjct: 8 ELIQELK----NHENIVHWHEEEPREAKTMPMPEQVDPNIRAALEKRGIERLFTHQYSAF 63
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
G+++V T T+SGK+LCYNLPVL++++ D SS ALY+FPTKALAQDQ L +
Sbjct: 64 QTVQNGESIVAVTPTASGKTLCYNLPVLQSIAEDASSRALYLFPTKALAQDQKSELNEII 123
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
I YDGDT+ R +R ++ITNPDMLH +ILP+H ++ + NL
Sbjct: 124 DETGMDIKSFTYDGDTSPAIRQKVRKAGHIVITNPDMLHSAILPHHTKWVSLFENL---- 179
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
+++VIDE H Y+G FG H A ++RRL R+C+ YGS PSF+ ++A
Sbjct: 180 ---------------KYIVIDELHTYRGVFGSHVANVIRRLMRICA-FYGSKPSFICTSA 223
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T ANPRE +L S + LI ++G+P +K F +NP ++NK
Sbjct: 224 TIANPRELAEQLTGKS-VRLIDDNGAPAGRKHFAFYNP-----PIVNK----------PL 267
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYR 564
+ S EV+ L +++ ++ I F RSR E++LS+ +EI+++ S+ YR
Sbjct: 268 HIRKSATVEVNKLAKTFLKNKIQTIVFARSRVRVEIILSHIQEIVKKEIGS--KSVRGYR 325
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
GY+ ++RR IER G + GV +TNALELG+D+G + V + G+PGS+AS WQQAGR+
Sbjct: 326 GGYLPKERREIERGLRDGSILGVVSTNALELGVDIGQLQVCVMTGYPGSVASAWQQAGRA 385
Query: 625 GRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
GRR+ +L V VA P+DQY +++P+ FK E I+ N +L HL CAA E P
Sbjct: 386 GRRQGEALIVMVANSDPIDQYIVRHPDYFFKRSPESARINPDNLIILVDHLKCAAYELPF 445
Query: 685 SLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESE 744
++ FG + I YL + L + + + + E P+ IS+R+ E
Sbjct: 446 RA---DETFGENDARDILE-----YLEEEGVLHENRERYHW-ASESFPASNISLRSASQE 496
Query: 745 RYEVIDMQSN---EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADL 801
++D +++ E++ A +++ A+Y+H+G Y V++L+ K A +K D+
Sbjct: 497 NVVIVDRSETADVKIIGEMDRFSAMTLLHDEAIYLHEGVQYQVEKLDWDHKKAYVRKVDV 556
Query: 802 KYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIF 861
+Y+T + V + + K + T AL + GSG I
Sbjct: 557 EYYTDANLAVQLKVLDIDRTDSRKKTALHFGDVTVNALPTIFKKIKMTTFENI-GSGPI- 614
Query: 862 DTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSD 921
+LP+ + A W+++ ++ + E+ + L +H L H+VP+YV C+ +D
Sbjct: 615 -----HLPEEELHTSAAWLELKETDSEIGEK--TLEQLLLGIAHVLQHIVPVYVMCDRND 667
Query: 922 --LAPECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
+ P+ H P I LYD +PGG G++ +V
Sbjct: 668 VHVVPQIKAAHTG--LPT-IFLYDHYPGGIGLADEV 700
>gi|392567119|gb|EIW60294.1| DEAD/H helicase [Trametes versicolor FP-101664 SS1]
Length = 1088
Score = 410 bits (1055), Expect = e-111, Method: Compositional matrix adjust.
Identities = 262/749 (34%), Positives = 400/749 (53%), Gaps = 88/749 (11%)
Query: 240 LLDNTKSALK-STGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYN------LPVL 292
L D+ AL+ S I+ LY+HQ +I A GKNV+V+T T+SGKS+ Y +P+L
Sbjct: 304 LSDSIVQALRNSRKITSLYTHQVAAITALSQGKNVIVSTSTASGKSVIYQARNGHFVPLL 363
Query: 293 EALSHDLSSSALYMFPTKALAQDQLRAL--LAMTKAFDASIDIGVYDGDTTQKDRMWLRD 350
+ L D S+A++++PTKALAQDQ AL L A I + YDGDT Q+ R +R+
Sbjct: 364 QFLEADPHSTAIFIYPTKALAQDQRAALEQLLCNCAGLEHIQVSTYDGDTPQELRRGIRE 423
Query: 351 NARLLITN--PDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAH 408
+A ++ TN DM+H SILP+ + R L NL+++A +DE H
Sbjct: 424 SASVIFTNFASDMIHASILPHEDAWRRFLKNLKIVA-------------------VDELH 464
Query: 409 AYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQND 468
Y G FG H A ++RRL R+C+ V FV +AT A P +H + + +E + D
Sbjct: 465 YYHGIFGSHVAQVMRRLRRVCAAVGNRRARFVTCSATIAKPGQHMKNIFGVDDVEEVTED 524
Query: 469 GSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRC 528
G+P +K F++WN + + D + A + ++E + L ++ G+R
Sbjct: 525 GAPSGRKDFLVWN-------------SPLKDPMDPALGRINSMTEATRLMRFLMARGVRV 571
Query: 529 IAFCRSRKLCELVLSYTR-EILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGV 587
I FC+ RK CEL + R E+ + +++ + YR GY EDRRRIER+ F G L G+
Sbjct: 572 ILFCKIRKSCELAMKTLRQELTADGRLDILERVMSYRGGYSQEDRRRIEREAFSGNLLGI 631
Query: 588 AATNALELGIDVGHIDVTLHLGFP-GSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYF 646
ATNALELG+D+G +D + LGFP G +AS QQAGR+GRR R +LAV+VA P+DQ+F
Sbjct: 632 VATNALELGVDIGVLDAVIMLGFPMGGLASFRQQAGRAGRRARDALAVFVADSLPVDQHF 691
Query: 647 MKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITT--L 704
+ +PE+LF + +D + +LE HL CAA E PL + DE YFGS + T +
Sbjct: 692 IHHPEELFDRNTDDLMVDLDSKVILEAHLQCAAYEMPL-MDEDEAYFGSSMKEICETKLV 750
Query: 705 KNR-GYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQ-------SNEV 756
K++ G+ + P K Y PS +SIR IE E+Y +D+ S +
Sbjct: 751 KDKEGWYHTHP------KYLPY------PSRHVSIRGIEEEKYCAVDVTRLGRPGGSATI 798
Query: 757 LEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVS 816
LEEIE S+A F++YEGAV++HQG T+LV+E++ +K+A ++D+ + T+ RD+T++
Sbjct: 799 LEEIEISRALFEIYEGAVFIHQGLTFLVQEVSHDTKMARLVRSDVNWITEPRDFTNVDAM 858
Query: 817 GGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQ 876
Y + +D + +A V F L + I D V+L P + E+
Sbjct: 859 ---QTYRIREIRD----SPHRAFYGRVELLTVVFAELENRNKAIIDAVDLDTPPWQRETT 911
Query: 877 AVWIQVPQ-SVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPH----- 930
+W+ VP+ ++ + + +H+A HA L+ + + DL EC P
Sbjct: 912 GMWLDVPKPALDLMRASGVNPAEAIHSAQHAFLNRFALSI-----DLKTECKPPEKEYKA 966
Query: 931 --DSRYFPERILLYDRHPGGTGVSKQVTD 957
R P R++ Y+ GV+ + D
Sbjct: 967 APSQRKRPARLIFYEPAGKTGGVAVKAFD 995
>gi|154686469|ref|YP_001421630.1| hypothetical protein RBAM_020370 [Bacillus amyloliquefaciens FZB42]
gi|429505608|ref|YP_007186792.1| hypothetical protein B938_10530 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|154352320|gb|ABS74399.1| YprA [Bacillus amyloliquefaciens FZB42]
gi|429487198|gb|AFZ91122.1| hypothetical protein B938_10530 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
Length = 748
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 248/756 (32%), Positives = 401/756 (53%), Gaps = 68/756 (8%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E+++ L+ + +VH + R+A + +P+ + N ++AL+ GI +L++HQ +
Sbjct: 8 ELIQELK----NHENIVHWHEEEPREAKTMPMPEQVDPNIRAALEKRGIERLFTHQYSAF 63
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
G+++V T T+SGK+LCYNLPVL++++ D SS ALY+FPTKALAQDQ L +
Sbjct: 64 QTVQNGESIVAVTPTASGKTLCYNLPVLQSIAEDASSRALYLFPTKALAQDQKSELNEII 123
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
I YDGDT+ R +R ++ITNPDMLH +ILP+H ++ + NL
Sbjct: 124 DETGMDIKSFTYDGDTSPAIRQKVRKAGHIVITNPDMLHSAILPHHTKWVSLFENL---- 179
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
+++VIDE H Y+G FG H A ++RRL R+C+ YGS PSF+ ++A
Sbjct: 180 ---------------KYIVIDELHTYRGVFGSHVANVIRRLMRICA-FYGSTPSFICTSA 223
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T ANPRE +L S + LI ++G+P +K F +NP ++NK
Sbjct: 224 TIANPRELAEQLTGKS-VRLIDDNGAPAGRKHFAFYNP-----PIVNK----------PL 267
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYR 564
+ S EV+ L +++ ++ I F RSR E++LS+ +EI+++ S+ YR
Sbjct: 268 HIRKSATVEVNELAKTFLKNKIQTIVFARSRVRVEIILSHIQEIVKKEIGS--KSVRGYR 325
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
GY+ ++RR IER G + GV +TNALELG+D+G + V + G+PGS+AS WQQAGR+
Sbjct: 326 GGYLPKERREIERGLRDGSILGVVSTNALELGVDIGQLQVCVMTGYPGSVASAWQQAGRA 385
Query: 625 GRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
GRR+ +L V VA P+DQY +++P+ FK E I+ N +L HL CAA E P
Sbjct: 386 GRRQGEALIVMVANSDPIDQYIVRHPDYFFKRSPESARINPDNLIILVDHLKCAAYELPF 445
Query: 685 SLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESE 744
++ FG + I YL + L + + + + E P+ IS+R+ E
Sbjct: 446 RA---DETFGENDARDILE-----YLEEEGVLHENRERYHW-ASESFPASNISLRSASQE 496
Query: 745 RYEVIDMQSN---EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADL 801
++D +++ E++ A +++ A+Y+H+G Y V++L+ K A +K D+
Sbjct: 497 NVVIVDRSETADVKIIGEMDRFSAMTLLHDEAIYLHEGVQYQVEKLDWDHKKAYVRKVDV 556
Query: 802 KYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIF 861
+Y+T + V + + K + T AL + GSG I
Sbjct: 557 EYYTDANLAVQLKVLDIDRTDSRKKTALHFGDVTVNALPTIFKKIKMTTFENI-GSGPI- 614
Query: 862 DTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSD 921
+LP+ + A W+++ ++ + E+ + L +H L H+VP+YV C+ +D
Sbjct: 615 -----HLPEEELHTSAAWLELKETDSEIGEK--TLEQLLLGIAHVLQHIVPVYVMCDRND 667
Query: 922 --LAPECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
+ P+ H P I LYD +PGG G++ +V
Sbjct: 668 VHVVPQIKAAHTG--LP-TIFLYDHYPGGIGLADEV 700
>gi|452077428|gb|AGF93388.1| DEAD/DEAH box helicase domain-containing protein [uncultured
organism]
Length = 753
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 242/758 (31%), Positives = 403/758 (53%), Gaps = 64/758 (8%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
++ +L+ ++ H ++I +KA E P+ + L+ GI+KLY+HQA++
Sbjct: 5 QICSYLKDNEKYNNRITHWKEIPEKKAEYAEFPEGIKSKIIKVLQEKGINKLYTHQAQAY 64
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
+ +G+N++V T T+SGK+LCYNLPVL+ + D SS ALY+FPTKAL+QDQL L +
Sbjct: 65 KTARSGENLIVVTPTASGKTLCYNLPVLDQILQDDSSRALYLFPTKALSQDQLAELYDLI 124
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
+ + I YDGDT R +R++ ++ITNPDMLH ILP+H ++ ++ NL
Sbjct: 125 ERLEEDIKTYTYDGDTQVNARKNIRNSGHIVITNPDMLHTGILPHHTKWVKLFENL---- 180
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
+++IDE H Y+G FG H A +++RL R+C+ YGSDP F+ ++A
Sbjct: 181 ---------------EYIIIDEIHNYRGVFGSHVANVIKRLQRICN-FYGSDPQFIAASA 224
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T ANP++H +L N ++LI +G+P K V +NP V+N+
Sbjct: 225 TIANPQQHAQKLIN-QEVKLIDENGAPRGPKDIVFYNP-----PVVNQQ----------L 268
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYR 564
S I E L ++++ ++ I F RSR E++LSY +E I YR
Sbjct: 269 GIRRSYILEARKLARLLLKNQIKSIVFTRSRLRTEILLSYLKEEFRNKK----QEIRGYR 324
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
GY+ +RR+IE+ G++ GV +TNALELGID+G +D + G+PGSIAS WQQAGR+
Sbjct: 325 GGYLPGERRKIEKGLRAGEITGVVSTNALELGIDIGRLDACIIAGYPGSIASTWQQAGRA 384
Query: 625 GRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
GRR SLA+ +A PLDQY + +P+ F+ P+E I+ N +L H+ CAA E P
Sbjct: 385 GRRNTRSLALMIATSSPLDQYIVNHPDYFFQQPVESALINPDNLLILMSHIKCAAFELPF 444
Query: 685 SLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESE 744
+ +E+ FG + I + YL L + + ++ + P+ IS+R+ S+
Sbjct: 445 T---EEEDFGVDTINEILS-----YLEEQRILRHTNGKWHWMA-PRYPAEDISLRSASSD 495
Query: 745 RYEVIDMQSN--EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLK 802
+ VID S +V+ +++ A +++ A+Y+H+ + Y VKEL+ K A +K ++
Sbjct: 496 DFAVIDTTSKPEQVIAKVDHFSALTTIHKDAIYIHESNQYQVKELDYEGKKAYVEKVNVN 555
Query: 803 YFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFD 862
Y+T D+ + + K K+ + + + T F + + +
Sbjct: 556 YYTDANLAVDLRIL---EKFENK--KNAEVEVEHGEVVVSAKATMFKKVKFNTHENVGYG 610
Query: 863 TVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDL 922
+ LP+ + + W+ P + + + SGL S+ L ++ P+Y+ C+ D+
Sbjct: 611 DIN--LPEMEMHTCSYWVCYPLNFENKYGKK-ELESGLLGTSNLLKNIAPVYLMCDPGDI 667
Query: 923 AP--ECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDM 958
+P+ + I LY+ +PGG G+S+++ ++
Sbjct: 668 NSTIHVRSPYTDK---PTIYLYESYPGGLGMSEKLYNI 702
>gi|227549695|ref|ZP_03979744.1| possible ATP-dependent helicase [Corynebacterium lipophiloflavum
DSM 44291]
gi|227078191|gb|EEI16154.1| possible ATP-dependent helicase [Corynebacterium lipophiloflavum
DSM 44291]
Length = 785
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 255/759 (33%), Positives = 383/759 (50%), Gaps = 63/759 (8%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E++ LR+ S + HVE + A A P + KS+L I+ LYSHQ E+
Sbjct: 22 EILAQLRERFPS-ATITHVEQVPASLARTAPWPRWVAPELKSSLIDASITHLYSHQREAA 80
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
+ AG++VVVAT TSSGKSLCY LPVL L+ D + A+Y+ PTKAL DQL++ +
Sbjct: 81 DLAFAGRDVVVATGTSSGKSLCYQLPVLTTLAADPQACAMYLTPTKALGSDQLQSASRLV 140
Query: 325 KAFDA--SIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRL 382
+ ++ YDGDT + R +R+ R + TNPDMLH IL H +++R+L +LR
Sbjct: 141 REVPGLGGVNPAPYDGDTPVEARSGIREQTRFVFTNPDMLHAGILSNHVRWARLLRHLR- 199
Query: 383 IAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFS 442
F+V+DE H Y+G FG H +L+LRRL R+C YGS P+ +F+
Sbjct: 200 ------------------FIVVDECHTYRGVFGAHVSLVLRRLLRMC-RAYGSSPTLIFA 240
Query: 443 TATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRN 502
+AT+A+P L + + +DG+P K +LW P D+ R
Sbjct: 241 SATTADPAGQAGRLCG-REVTAVTDDGAPTGDKTLILWEPGFI-----------EDNVRR 288
Query: 503 AANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETA-PHLVDSIC 561
AA +E + + A +V+ G R + F RSR+ ELV T E L + I
Sbjct: 289 AAT------TEAAGVMATLVEQGARTLTFVRSRRAAELVAMRTAEDLVVAGRADFAERIA 342
Query: 562 VYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQA 621
YRAGY+AEDRR +ER G L GVA TNALELGIDVG +D + GFPG++AS QQA
Sbjct: 343 SYRAGYLAEDRRALERALDNGDLLGVATTNALELGIDVGGLDAVVMAGFPGTVASFRQQA 402
Query: 622 GRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALE 681
GR+GRR + + V +A + P+D Y + +P L P+E + N +L H+ CAA+E
Sbjct: 403 GRAGRRGQSAAVVMIARDEPMDTYLVNHPAALLGRPVENSVFNPANPFILRDHVYCAAVE 462
Query: 682 HPLSLIYDEKYFGSG-----LSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTI 736
PL+ E++ +G +++G+ +N G+ + P L+ ++ H +
Sbjct: 463 KPLTEADVEEFNAAGVVNELVAAGLLRRRNSGWFAV-PRLEG--ELSPETAHA-----AV 514
Query: 737 SIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALC 796
S+R E+ ++D +L I+ S+A QV++GAVY+HQG Y++ L+L +AL
Sbjct: 515 SLRGGAGEQVMIVDTSDGRLLGTIDASRAMSQVHDGAVYIHQGEYYVIDTLDLHDYVALA 574
Query: 797 QKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRG 856
A Y T R T+I + A QL+ A Y +
Sbjct: 575 SPAMPDYSTHARSTTEISI------LAQASEPRQLSPGLWLASVDVEVVDRVTGYVVRLS 628
Query: 857 SGIIFDTVELYLPKYSYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYV 915
G + + + L LP+ ++AV + P + + LHAA HA + ++P+
Sbjct: 629 DGTVSEHIPLDLPEQRLITRAVAYTIDPLVLDKLGITPAEIPGALHAAEHAAIGLLPLLA 688
Query: 916 RCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
C+ D+ H P + +YD HPGG G + +
Sbjct: 689 TCDRWDIGGVSTALHQDTLLPT-VFVYDGHPGGAGFADE 726
>gi|311744552|ref|ZP_07718352.1| DEAD/DEAH box family ATP-dependent RNA helicase [Aeromicrobium
marinum DSM 15272]
gi|311312171|gb|EFQ82088.1| DEAD/DEAH box family ATP-dependent RNA helicase [Aeromicrobium
marinum DSM 15272]
Length = 767
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 253/750 (33%), Positives = 382/750 (50%), Gaps = 63/750 (8%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATM 278
++ HVE + AR AV+ P+ + ++A + GI +L+ HQAE++ AG++V VAT
Sbjct: 13 RVTHVEVVPARDAVVEPWPEWIAPAARAAFAAHGIDRLWGHQAEALAHLRAGRHVAVATG 72
Query: 279 TSSGKSLCYNLPVL---------EALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDA 329
TSSGKSL + P L EAL S LY+ PTKALA DQ R + + D
Sbjct: 73 TSSGKSLVFQAPALTALDAGRGGEALQGHRRPSVLYLAPTKALAADQWRRV----RELDP 128
Query: 330 SIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVT 389
++ + DGD T+++R W RD+A ++TNPD LH S+LP H +++R+L LR
Sbjct: 129 AVRVATVDGDNTREERAWARDHAAWVLTNPDTLHHSVLPGHARWTRLLGGLR-------- 180
Query: 390 TEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANP 449
+VV+DE H Y+G FG H A +LRRL R+C H YG+DP FV S+AT A+P
Sbjct: 181 -----------YVVVDECHHYRGVFGAHVAQVLRRLQRICHH-YGADPRFVLSSATVADP 228
Query: 450 REHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSS 509
E L L + + +D SP + LW P +L ++ R A
Sbjct: 229 AEFAGRLTGLE-VTAVTDDASPRGVRTIALWEP-----PLLPGRDEAVEPVRRPA----- 277
Query: 510 PISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVA 569
+E +L A++V G+R + F RSR+ E V + ++ E P L I YR GY+
Sbjct: 278 -ATEAGHLLADLVAGGVRTLVFVRSRRGAEGVAGTAQRLVGEIDPDLPGRIATYRGGYLP 336
Query: 570 EDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRER 629
E+RR +E+ L G+A+TNALELGIDV +D + +GFPG+ A+L QQ GR+GR +
Sbjct: 337 EERRALEQRLRTADLLGLASTNALELGIDVSGLDAVVSVGFPGTRAALQQQFGRAGRDGQ 396
Query: 630 PSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYD 689
SL V VA PLD Y + +PE L +P+E D N VL HL AA E PL+ D
Sbjct: 397 DSLGVLVARADPLDTYLVHHPEALLGAPLEATVFDPDNPYVLGPHLAAAAQELPLTET-D 455
Query: 690 EKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVI 749
FG G+ L G+L P+ + + +R+ +++
Sbjct: 456 LTTFGPRAREGVDALAAAGWLRQRPA-------GWFWTRRDRAADLADLRSSGGAPVQIV 508
Query: 750 DMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRD 809
D + ++ ++ A V+EGAVY+HQG TYLV+ + + AL ++AD + T+ R
Sbjct: 509 DDGTGRLVGTVDAGSADAAVHEGAVYVHQGETYLVERYDPDTAAALVRRADPDWTTQARS 568
Query: 810 YTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLP 869
T+I V+G + + T + ++ T + T T++ + RG+ V L LP
Sbjct: 569 ATEITVTGTD--HHTDWGRATVSLGTVDVM--TQVTSYLRLSTVGRGT---LGEVSLELP 621
Query: 870 KYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNP 929
S ++AVW + V V HAA HA + ++P+ C+ D+
Sbjct: 622 VRSLRTRAVWWTLDPDVVGSVLDEVDVPGAAHAAEHASIGLLPLLATCDRWDIGGVSTAL 681
Query: 930 H-DSRYFPERILLYDRHPGGTGVSKQVTDM 958
H D+ + ++D HPGG G +++ D+
Sbjct: 682 HADTGRM--TVFVHDGHPGGAGFAERGYDV 709
>gi|335039836|ref|ZP_08532982.1| DEAD/DEAH box helicase domain protein [Caldalkalibacillus thermarum
TA2.A1]
gi|334180260|gb|EGL82879.1| DEAD/DEAH box helicase domain protein [Caldalkalibacillus thermarum
TA2.A1]
Length = 770
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 258/763 (33%), Positives = 398/763 (52%), Gaps = 77/763 (10%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
+++E L++ +V + +++A P+AL + AL+ GI LY+HQA ++
Sbjct: 9 QLLEELKQDPAFADHIVEWVTLPSQEAKYAPFPEALHPTVRKALEQRGIKALYTHQATAL 68
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
A+L GKN V T T+SGK+LCYNLPVL A++++ + ALY+FPTKALAQDQ L
Sbjct: 69 EAALEGKNFVAVTPTASGKTLCYNLPVLNAIANNPHTRALYLFPTKALAQDQKTELQTFV 128
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
+A I YDGDT R +R +++TNPDMLH +ILP+H ++ + NL
Sbjct: 129 DDMNADIKTHTYDGDTPANIRQVIRQAGHVVLTNPDMLHAAILPHHTKWVALFENL---- 184
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
++VVIDE H Y+G FG H A +LRRL R+C YGS P F ++A
Sbjct: 185 ---------------KYVVIDELHTYRGVFGSHVANVLRRLKRIC-RFYGSSPQFFCTSA 228
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T ANP+E +L + L+ N+G+P +K F+L+NP V+NK + R++A
Sbjct: 229 TIANPKELAEQLTG-EPMVLVDNNGAPRGRKHFILYNP-----PVVNKPL----NIRHSA 278
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILE-ETAPHLVDSICVY 563
+ I+ + ++++G++ I F RSR E++L Y R++++ E P SI Y
Sbjct: 279 TLEARRIASL------LLKNGIQTIVFARSRVKVEVILHYLRQLVQKELGP---TSIRAY 329
Query: 564 RAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGR 623
R GY+ ++RR IE G + V +TNALELG+D+G + + G+PG+IASLWQQAGR
Sbjct: 330 RGGYLPKERREIESGLRNGNIRCVVSTNALELGVDIGQLQACVLTGYPGTIASLWQQAGR 389
Query: 624 SGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHP 683
+GRR+ S+ V PLDQY M +PE +F+ E I N +L H+ CAA E P
Sbjct: 390 AGRRQDESVVFLVGSSSPLDQYVMHHPEFIFERNPETARIQPDNLIILVDHIKCAAYELP 449
Query: 684 LSLIYDEKYFGSGLS-SGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIE 742
F G + G+ + +L+ + L + Y ++ P+H IS+R+
Sbjct: 450 ---------FRQGETFEGVEIEEILHFLAEEQVLHYQKNKW-YWMNDSFPAHNISLRSAS 499
Query: 743 SERYEVIDMQSN---EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKA 799
E +ID +V+ E++ A +++ A+Y+HQG Y V++L+ K A ++
Sbjct: 500 QENVVIIDQTEAPNVKVIGEMDRFSAMTLLHDEAIYLHQGKQYQVEKLDYEQKKAYVREV 559
Query: 800 DLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGI 859
++ Y+T + V + + T A+A F + GSG
Sbjct: 560 NVNYYTDANLAVQLKVLEVDKQREERGVSFAYGDVTVNAMATIFKKIKFETHENI-GSGP 618
Query: 860 IFDTVELYLPKYSYESQAVWIQVPQSV-----KAVVEQNFSFRSGLHAASHALLHVVPIY 914
I +LP+ + A W+ +P + +A +EQ GL +H L HV Y
Sbjct: 619 I------HLPEEELHTTAAWVSLPAHLLNTYGEARLEQ------GLVGLAHILRHVASFY 666
Query: 915 VRCNFSDL--APECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
V C+ DL P+ H+ + I LYDR+PGG G+S+QV
Sbjct: 667 VMCDPQDLFVTPQVKAVHNEQ---PTIFLYDRYPGGIGLSEQV 706
>gi|394993593|ref|ZP_10386338.1| YprA [Bacillus sp. 916]
gi|393805705|gb|EJD67079.1| YprA [Bacillus sp. 916]
Length = 748
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 248/756 (32%), Positives = 400/756 (52%), Gaps = 68/756 (8%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E+++ L+ + +VH + R+A + +P+ + ++AL+ GI +L++HQ +
Sbjct: 8 ELIQELK----NHENIVHWHEEEPREAKTMPMPEQVDRKIRAALEKRGIERLFTHQYSAF 63
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
G+++V T T+SGK+LCYNLPVL++++ D SS ALY+FPTKALAQDQ L +
Sbjct: 64 QTVQNGESIVAVTPTASGKTLCYNLPVLQSIAEDASSRALYLFPTKALAQDQKSELNEII 123
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
I YDGDT+ R +R ++ITNPDMLH +ILP+H ++ + NL
Sbjct: 124 DETGMDIKSFTYDGDTSPAIRQKVRKAGHIVITNPDMLHSAILPHHTKWVSLFENL---- 179
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
+++VIDE H Y+G FG H A ++RRL R+C+ YGS PSF+ ++A
Sbjct: 180 ---------------KYIVIDELHTYRGVFGSHVANVIRRLMRICA-FYGSTPSFICTSA 223
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T ANPRE +L S + LI ++G+P +K F +NP ++NK
Sbjct: 224 TIANPRELAEQLTGKS-VRLIDDNGAPAGRKHFAFYNP-----PIVNK----------PL 267
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYR 564
+ S EV+ L +++ ++ I F RSR E++LS+ +EI+++ S+ YR
Sbjct: 268 HIRKSATVEVNELAKTFLKNKIQTIVFARSRVRVEIILSHIQEIVKKEIG--AKSVRGYR 325
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
GY+ ++RR IER G + GV +TNALELG+D+G + V + G+PGS+AS WQQAGR+
Sbjct: 326 GGYLPKERREIERGLRDGSILGVVSTNALELGVDIGQLQVCVMTGYPGSVASAWQQAGRA 385
Query: 625 GRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
GRR+ +L V VA P+DQY +++P+ FK E I+ N +L HL CAA E P
Sbjct: 386 GRRQGEALIVMVANSDPIDQYIVRHPDYFFKRSPESARINPDNLIILVDHLKCAAYELPF 445
Query: 685 SLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESE 744
++ FG + I YL + L + + + + E P+ IS+R+ E
Sbjct: 446 RA---DETFGENDARDILE-----YLEEEGVLHENRERYHW-ASESFPASNISLRSASQE 496
Query: 745 RYEVIDMQSN---EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADL 801
++D +++ E++ A +++ A+Y+H+G Y V++L+ K A +K D+
Sbjct: 497 NVVIVDRSETADVKIIGEMDRFSAMTLLHDEAIYLHEGVQYQVEKLDWDHKKAYVRKVDV 556
Query: 802 KYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIF 861
+Y+T + V + + K + T AL + GSG I
Sbjct: 557 EYYTDANLAVQLKVLDIDRTDSRKKTALHFGDVTVNALPTIFKKIKMTTFENI-GSGPI- 614
Query: 862 DTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSD 921
+LP+ + A W+++ ++ + E+ + L SH L H+VP+YV C+ +D
Sbjct: 615 -----HLPEEELHTSAAWLELKETDSEIGEK--TLEQLLLGISHVLQHIVPVYVMCDRND 667
Query: 922 --LAPECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
+ P+ H P I LYD +PGG G++ +V
Sbjct: 668 VHVVPQIKAAHTG--LPT-IFLYDHYPGGIGLADEV 700
>gi|430749961|ref|YP_007212869.1| helicase family protein with metal-binding cysteine cluster
[Thermobacillus composti KWC4]
gi|430733926|gb|AGA57871.1| helicase family protein with metal-binding cysteine cluster
[Thermobacillus composti KWC4]
Length = 762
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 250/757 (33%), Positives = 394/757 (52%), Gaps = 61/757 (8%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E + LR + H E I AR+AV +P L ++AL++ GI +LYSHQA +
Sbjct: 13 EWLNDLRSRPEIMNNVTHWETIPAREAVYAPLPRGLHPKLEAALRAKGIDRLYSHQASAF 72
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
A LAG+N+V T T+SGK+LCYNLPVL+AL D ALY+FPTKALAQDQ+ L +
Sbjct: 73 EAVLAGRNIVTVTPTASGKTLCYNLPVLQALLEDNGVRALYLFPTKALAQDQVAELQQLA 132
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
+A I YDGDT R +R+ +++TNPDMLH +ILP+H ++ ++ N
Sbjct: 133 DLMEADIKTHTYDGDTPPTVRQAIRNAGHIVVTNPDMLHAAILPHHTKWVKLFEN----- 187
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
++++V+DE HAY+G FG H A ++RRL R+C YGS+P F+ ++A
Sbjct: 188 --------------VKYIVLDELHAYRGVFGSHVANVIRRLRRIC-RFYGSNPIFLCASA 232
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T NP EH L +++I N+G+P +K F+ +NP V+N+
Sbjct: 233 TIDNPGEHAERLIG-DKVQVIDNNGAPSGEKHFIFYNP-----PVVNQQ----------L 276
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYR 564
S + E L A +++ G++ I F RSR E++L+Y ++ +++ I YR
Sbjct: 277 GIRRSSVLETQRLAAMLLRQGVQTIVFARSRVRVEILLTYLQDAVKQLPGG--KQIRGYR 334
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
GY+ + RR IER G++ GV +TNALELGID+G + + G+PG+IAS WQQ+GR+
Sbjct: 335 GGYLPKQRREIERGLRNGEILGVVSTNALELGIDIGQLQACVINGYPGTIASTWQQSGRA 394
Query: 625 GRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
GRR ++ VA PLDQY ++ PE P E I N +L H+ CAA E P
Sbjct: 395 GRRHGTAVTFLVASSNPLDQYVIQNPEFFLNRPPERALIHPDNLLILIDHVKCAAYELP- 453
Query: 685 SLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESE 744
F G + G L++ + + K Y + P++ IS+R+ E
Sbjct: 454 --------FEKGETFGCEKLEDMLEFLVEEQVLHRVKDRWYWMAQSFPANNISLRSAAQE 505
Query: 745 RYEVIDM-QSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKY 803
+ +ID+ + V+ E++ A ++E A+Y+H+G Y V++L+ K A ++ + Y
Sbjct: 506 NFVIIDITNGSRVIGEVDRFSAPTLIHEEAIYIHEGVQYQVEKLDYPEKKAYVREVSVDY 565
Query: 804 FTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDT 863
FT ++ V + + Q + T A T F RL I +
Sbjct: 566 FTDANMAVELKVLHVDREAESGGIVRQYGEVTVNA-----RPTIFKKIRLRTHENI--GS 618
Query: 864 VELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLA 923
++LP+ + W + A + N + +S L ++ L+H+ P+Y+ C+ D+
Sbjct: 619 GPIHLPEEELHTSGYWFSFSEEAAARLGTN-AMQSALLGIANVLIHIAPLYLMCDPFDIR 677
Query: 924 --PECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDM 958
P+ + H R I YDR+PGG G+S+++ ++
Sbjct: 678 VYPQVKSVHMKR---PTIYFYDRYPGGIGLSERLFEL 711
>gi|304314645|ref|YP_003849792.1| helicase [Methanothermobacter marburgensis str. Marburg]
gi|302588104|gb|ADL58479.1| predicted helicase [Methanothermobacter marburgensis str. Marburg]
Length = 825
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 257/743 (34%), Positives = 397/743 (53%), Gaps = 82/743 (11%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
HVE + AR+A E+ D L +N L+ GI +LY HQAE++ A G+N+++ T T+S
Sbjct: 21 HVETVPARRAEYAEVKD-LPENIMEYLEGNGI-RLYRHQAEALEAIREGRNILITTPTAS 78
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTT 341
GK+L +NLP++E L+ D S++ALY++P KAL++DQL+ L + +++ YDGDT
Sbjct: 79 GKTLAFNLPIMETLTLDGSATALYIYPAKALSRDQLKVLRHLESELGITLNPATYDGDTP 138
Query: 342 QKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRF 401
++ R W+R+N+R ++TNP LH ILP+H Q+ R SNLR +
Sbjct: 139 REMRPWIRENSRAVLTNPHQLH-RILPWHHQWRRFYSNLR-------------------Y 178
Query: 402 VVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLST 461
VVIDEAH Y+G FG AL++RRL R+C H YGSDP F+ ++AT ANP E +L L
Sbjct: 179 VVIDEAHQYRGVFGSSVALLIRRLRRICRH-YGSDPRFILASATLANPEEFSGKLTGLD- 236
Query: 462 LELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPIS--EVSYLFA 519
+I D SP + FVL+NP S K P + E S +
Sbjct: 237 FHVISGDTSPSGPRHFVLYNPYS---------------------KRGDPSAHLETSSILT 275
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDF 579
+V G++ + F SRK+ ELV +TRE L+ L+D + YRAGY+A+ RR IE
Sbjct: 276 YLVLRGVQTLCFTVSRKMAELVTRWTREQLDRENRKLIDRVTSYRAGYLADQRRMIESGL 335
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFE 639
GKL GV TNALELGID+G +D + G+PG++ S WQQAGR+GR SL + VAFE
Sbjct: 336 RSGKLLGVTTTNALELGIDIGSLDAVIISGYPGTMISTWQQAGRAGRNRNDSLVILVAFE 395
Query: 640 GPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSS 699
PLDQY MK P +F+ P E I+ +N +L H CAA E PL+L + + S
Sbjct: 396 NPLDQYIMKNPSFIFERPHENAIINPENRLILRNHTACAASELPLTL---DDFLDHDFSM 452
Query: 700 GIT---TLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEV 756
+ + +S + + S+ F Y G + + S T ++ +
Sbjct: 453 AVAGEMLEEGELEISQEGLVCSTDPHFRY-GLDDISSDTFTV------------ICEGRT 499
Query: 757 LEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVS 816
LE + S+A+ + +EGAV M+ G+TY+V++ +L + ++ D++Y T T+
Sbjct: 500 LETMSRSQAYREAHEGAVLMNHGNTYIVRDFDLQKRRITVERRDVEYHTSVLRETE---- 555
Query: 817 GGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQ 876
+ + + + T + YR+ S ++ +L LP + ++
Sbjct: 556 ----LRVIRKLRRRRVGSLEVNFGEVEVTEHYTGYRVMNYSRVL-GKRDLELPPIRFRTR 610
Query: 877 AVWIQVPQSVKAVVEQNF----SFRSGLHAASHALLHVVPIYVRCNFSDLAP-ECPNPHD 931
A+W VP++++ VE + +F GLH A HAL+ + P++V C+ D+ P D
Sbjct: 611 ALWFTVPETLRKRVEGEYGDDETFEGGLHGAEHALIALFPLHVLCDRMDIGGLSTPWHQD 670
Query: 932 SRYFPERILLYDRHPGGTGVSKQ 954
++ + +YD GG G++++
Sbjct: 671 TQ--EATVFIYDGFEGGIGLAEK 691
>gi|308174013|ref|YP_003920718.1| ATP-dependent helicase [Bacillus amyloliquefaciens DSM 7]
gi|384158773|ref|YP_005540846.1| ATP-dependent helicase [Bacillus amyloliquefaciens TA208]
gi|384164786|ref|YP_005546165.1| ATP-dependent helicase [Bacillus amyloliquefaciens LL3]
gi|384167838|ref|YP_005549216.1| ATP-dependent helicase [Bacillus amyloliquefaciens XH7]
gi|307606877|emb|CBI43248.1| putative ATP-dependent helicase [Bacillus amyloliquefaciens DSM 7]
gi|328552861|gb|AEB23353.1| ATP-dependent helicase [Bacillus amyloliquefaciens TA208]
gi|328912341|gb|AEB63937.1| putative ATP-dependent helicase [Bacillus amyloliquefaciens LL3]
gi|341827117|gb|AEK88368.1| putative ATP-dependent helicase [Bacillus amyloliquefaciens XH7]
Length = 748
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 246/756 (32%), Positives = 401/756 (53%), Gaps = 68/756 (8%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E+++ L+ +VH + R+A + +PD + ++ALK GI +L++HQ +
Sbjct: 8 ELIQELK----DHENIVHWHEEEPREAKTMPMPDKVNPKIRAALKKRGIERLFTHQYSAF 63
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
G+++V T T+SGK+LCYNLPVL++++ D SS ALY+FPTKALAQDQ L +
Sbjct: 64 QTVQTGESIVAVTPTASGKTLCYNLPVLQSIAEDSSSRALYLFPTKALAQDQKSELNEII 123
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
I YDGDT+ R +R ++ITNPDMLH +ILP+H ++ + NL
Sbjct: 124 DETGMDIKSFTYDGDTSPAIRQKVRKAGHIVITNPDMLHSAILPHHTKWVSLFENL---- 179
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
+++VIDE H Y+G FG H A ++RRL R+C+ YGS P F+ ++A
Sbjct: 180 ---------------KYIVIDELHTYRGVFGSHVANVIRRLMRICA-FYGSTPLFICTSA 223
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T ANPRE +L ++++LI ++G+P +K F +NP ++NK
Sbjct: 224 TIANPRELAEQLTG-NSVKLIDDNGAPSGRKHFAFYNP-----PIVNK----------PL 267
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYR 564
+ S EV+ L +++ ++ I F RSR E++LS+ +EI+++ S+ YR
Sbjct: 268 HIRKSATVEVNELAKTFLKNKIQTIVFARSRVRVEIILSHIQEIVKKEIG--AKSVRGYR 325
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
GY+ ++RR IER G + GV +TNALELG+D+G + V + G+PGS+AS WQQAGR+
Sbjct: 326 GGYLPKERREIERGLRDGSILGVVSTNALELGVDIGQLQVCVMTGYPGSVASAWQQAGRA 385
Query: 625 GRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
GRR+ +L V VA P+DQY +++P+ FK E I+ N +L HL CAA E P
Sbjct: 386 GRRQGEALIVMVANSDPIDQYIVRHPDYFFKRSPESARINPDNLIILVDHLKCAAYELPF 445
Query: 685 SLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESE 744
++ FG + I YL + L + + + + E P+ IS+R+ E
Sbjct: 446 RA---DETFGENDARDILE-----YLEEEGVLHENRERYHW-ASESFPASNISLRSASQE 496
Query: 745 RYEVIDMQSN---EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADL 801
++D +++ E++ A +++ A+Y+H+G Y V++L+ K A +K D+
Sbjct: 497 NVVIVDRSETADVKIIGEMDRFSAMTLLHDEAIYLHEGVQYQVEKLDWEHKKAYVRKVDV 556
Query: 802 KYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIF 861
+Y+T + V + + + + + T AL + GSG I
Sbjct: 557 EYYTDANLAVQLKVLEIDRSESRRKTAIHFGDVTVNALPTIFKKIKMTTFENI-GSGPI- 614
Query: 862 DTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSD 921
+LP+ + A W+++ ++ + E+ + L +H L H+VP+YV C+ +D
Sbjct: 615 -----HLPEEELHTSAAWLELKETDSEIGEK--TLEQLLLGIAHVLQHIVPVYVMCDRND 667
Query: 922 --LAPECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
+ P+ H P I LYD +PGG G++ +V
Sbjct: 668 VHVVPQIKAAHTG--LP-TIFLYDHYPGGIGLADEV 700
>gi|452855981|ref|YP_007497664.1| putative ATP-dependent helicase [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
gi|452080241|emb|CCP22003.1| putative ATP-dependent helicase [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
Length = 748
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 247/756 (32%), Positives = 400/756 (52%), Gaps = 68/756 (8%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E+++ L+ + +VH + R+A + +P+ + ++AL+ GI +L++HQ +
Sbjct: 8 ELIQELK----NHENIVHWHEEEPREAKTMPMPEQVDRKIRAALEKRGIERLFTHQYSAF 63
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
G+++V T T+SGK+LCYNLPVL++++ D SS ALY+FPTKALAQDQ L +
Sbjct: 64 QTVQNGESIVAVTPTASGKTLCYNLPVLQSIAEDASSRALYLFPTKALAQDQKSELNEII 123
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
I YDGDT+ R +R ++ITNPDMLH +ILP+H ++ + NL
Sbjct: 124 DETGMDIKSFTYDGDTSPAIRQKVRKAGHIVITNPDMLHSAILPHHTKWVSLFENL---- 179
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
+++VIDE H Y+G FG H A ++RRL R+C+ YGS PSF+ ++A
Sbjct: 180 ---------------KYIVIDELHTYRGVFGSHVANVIRRLMRICA-FYGSTPSFICTSA 223
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T ANPRE +L S + LI ++G+P +K F +NP ++NK
Sbjct: 224 TIANPRELAEQLTGKS-VRLIDDNGAPAGRKHFAFYNP-----PIVNKP----------L 267
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYR 564
+ S EV+ L +++ ++ I F RSR E++LS+ +EI+++ S+ YR
Sbjct: 268 HIRKSATVEVNELAKTFLKNKIQTIVFARSRVRVEIILSHIQEIVKKEIG--AKSVRGYR 325
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
GY+ ++RR IER G + GV +TNALELG+D+G + V + G+PGS+AS WQQAGR+
Sbjct: 326 GGYLPKERREIERGLRDGSILGVVSTNALELGVDIGQLQVCVMTGYPGSVASAWQQAGRA 385
Query: 625 GRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
GRR+ +L V VA P+DQY +++P+ FK E I+ N +L HL CAA E P
Sbjct: 386 GRRQGEALIVMVANSDPIDQYIVRHPDYFFKRSPESARINPDNLIILVDHLKCAAYELPF 445
Query: 685 SLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESE 744
++ FG + I YL + L + + + + E P+ IS+R+ E
Sbjct: 446 RA---DETFGENDARDILE-----YLEEEGVLHENRERYHW-ASESFPASNISLRSASQE 496
Query: 745 RYEVIDMQSN---EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADL 801
++D +++ E++ A +++ A+Y+H+G Y V++L+ K A +K D+
Sbjct: 497 NVVIVDRSETADVKIIGEMDRFSAMTLLHDEAIYLHEGVQYQVEKLDWDHKKAYVRKVDV 556
Query: 802 KYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIF 861
+Y+T + V + + K + T AL + GSG I
Sbjct: 557 EYYTDANLAVQLKVLDIDRTDSRKKTALHFGDVTVNALPTIFKKIKMTTFENI-GSGPI- 614
Query: 862 DTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSD 921
+LP+ + A W+++ ++ + E+ + L +H L H+VP+YV C+ +D
Sbjct: 615 -----HLPEEELHTSAAWLELKETDSEIGEK--TLEQLLLGIAHVLQHIVPVYVMCDRND 667
Query: 922 --LAPECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
+ P+ H P I LYD +PGG G++ +V
Sbjct: 668 VHVVPQIKAAHTG--LPT-IFLYDHYPGGIGLADEV 700
>gi|385680659|ref|ZP_10054587.1| DEAD/DEAH box helicase-like protein [Amycolatopsis sp. ATCC 39116]
Length = 942
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 238/665 (35%), Positives = 352/665 (52%), Gaps = 53/665 (7%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+ HV D+ AR+A E P +AL++ G+ + ++HQ+E+ + G++VVV+T T
Sbjct: 24 VTHVADLPAREARHTEWPSWADPRVVAALRAGGVERPWAHQSEAASLAFEGRHVVVSTGT 83
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGD 339
+SGKSLCY LPVL AL+ D ++ALY+ PTKAL DQLR++ A+ + YDGD
Sbjct: 84 ASGKSLCYQLPVLSALAADDKATALYLSPTKALGADQLRSVSALDVP---GVRAASYDGD 140
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T +R W+R +AR + TNPDMLH IL H +++R+ F +
Sbjct: 141 TPMAERDWVRAHARWVFTNPDMLHRGILAAHSRWARL-------------------FRKL 181
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
+VVIDE H+Y+G FG H AL+LRRL R+ H YGS P F+ ++AT+A P E L
Sbjct: 182 AYVVIDECHSYRGVFGSHVALLLRRLQRVARH-YGSSPVFILASATTAEPGEFACRLVGE 240
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTR--NAANKTSSPISEVSYL 517
+ +++ D SP + LW P ++D R N A S +E S +
Sbjct: 241 DCVPVVE-DASPRGARTVALWEPPL------------VEDHRGENGAPVRRSAGAEASRI 287
Query: 518 FAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIER 577
AE+V G R +AF RSR+ EL R +L E L + YRAG++ E+RR +ER
Sbjct: 288 LAELVVEGARTLAFVRSRRGAELTALGARRLLSEVDSELPSQVAAYRAGFLPEERRALER 347
Query: 578 DFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVA 637
G+L GVA TNALELG+D+ +D + G+PG++AS WQQAGR+GR +L V+VA
Sbjct: 348 ALLSGELKGVATTNALELGVDIAGLDAVVLAGYPGTLASFWQQAGRAGRSGDDALVVFVA 407
Query: 638 FEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGL 697
+ PLD Y + +P + + P+E +D N VL L CAA E PL+ + + G+
Sbjct: 408 RDDPLDTYLVHHPAAVLERPVETAVLDPSNPYVLAPQLACAAAELPLTTGELDTFGGAAA 467
Query: 698 SSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVL 757
+ L L PS Y P + + IR E+ V++ ++ +L
Sbjct: 468 REVLDRLVADRLLRRRPS-------GWYWTSRDRPHYEVDIRGSGGEQIAVVEADTSRLL 520
Query: 758 EEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSG 817
++ A V+ GAVY+HQG +Y+V EL+L S IAL D ++ T R+ DI V
Sbjct: 521 GTVDPGSACTTVHPGAVYLHQGSSYVVDELDLESGIALVHAEDPEWTTSAREVADITVLS 580
Query: 818 GNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQA 877
++ ++ + VT+ G+ R R SG + D V L LP + E++A
Sbjct: 581 TQE----RLDYGGVSVCLGE---VAVTSQVVGYLRR-RPSGEVLDQVALDLPAQTLETRA 632
Query: 878 VWIQV 882
VW +
Sbjct: 633 VWYTI 637
>gi|296118094|ref|ZP_06836676.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Corynebacterium
ammoniagenes DSM 20306]
gi|295968980|gb|EFG82223.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Corynebacterium
ammoniagenes DSM 20306]
Length = 764
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 249/749 (33%), Positives = 382/749 (51%), Gaps = 61/749 (8%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
M H A KA P+ L I++LYSHQ E A+ A ++VVVAT T
Sbjct: 1 MTHSVSQPATKAQFAPWPEWALPELVQKFAERDITQLYSHQREVADAAFASQDVVVATGT 60
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFD--ASIDIGVYD 337
SSGKSL Y LP+L L+ ++ ALY+ PTKAL DQL A++ +T+ D AS+ YD
Sbjct: 61 SSGKSLGYQLPILTRLAEAPTACALYLTPTKALGSDQLLAIMELTRGIDKLASVIPSPYD 120
Query: 338 GDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFL 397
GDT + R +RD+AR + +NPDM+HMSIL H +++R L +L+
Sbjct: 121 GDTPSEARAGIRDHARFVFSNPDMVHMSILAAHERWTRFLRHLQ---------------- 164
Query: 398 FIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELA 457
F+VIDE H+Y+G FG H AL++RRL R+C+ YG+ P+ + ++AT +P EH L
Sbjct: 165 ---FIVIDECHSYRGVFGAHVALVVRRLLRICAR-YGAHPTIIGASATMNDPAEHMKRLT 220
Query: 458 NLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYL 517
+ + DG+P ++ LW P + ++ D N A + +E + +
Sbjct: 221 SRVGFLEVTQDGAPTGERTIALWEP-----GFIEGAEGD-----NGAPVRRAATTEAAEM 270
Query: 518 FAEMVQHGLRCIAFCRSRKLCELV-LSYTREILEETA-PHLVDSICVYRAGYVAEDRRRI 575
A +V G R + F RSR+ E V L E+ A P I YRAGY+AEDRR++
Sbjct: 271 MAAIVAEGARTLTFVRSRRSAEQVALRCQAELSGALARPDFAQRIASYRAGYLAEDRRKL 330
Query: 576 ERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVY 635
E G+L GVA T+ALELGIDVG +D + GFPG++AS WQQAGR+GRR + SL V
Sbjct: 331 ENALDSGELLGVATTSALELGIDVGGLDAVVTAGFPGTVASFWQQAGRAGRRGQGSLVVL 390
Query: 636 VAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLS-----LIYDE 690
VA + P+D Y + P+ L P+E + +N +L H+ CA +E PL+ E
Sbjct: 391 VARDEPMDTYLVHNPDALLGRPVEASVFNPENPYILYGHIYCACIEQPLTDAEVRFYRAE 450
Query: 691 KYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVID 750
+ + G+ + +G+ + P LD + + +S+R ++D
Sbjct: 451 QVIEALAQQGLVRRRPQGWFAV-PQLDGDLR-------PETAHSQVSLRGGAGNNVLIMD 502
Query: 751 MQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDY 810
+L ++ ++A QV+ GAVY+HQG ++++++L++ IA + +Y T+
Sbjct: 503 TSDGRLLGTVDAARAHSQVHPGAVYLHQGESFVIEDLDIEEGIAFAAPGEPEYSTQPNST 562
Query: 811 TDIHVSGGNNAYATKISKDQLTKTTAQALAC----TVTTTWFGFYRLWRGSGIIFDTVEL 866
TDI A + +D L A VT G++R G D + L
Sbjct: 563 TDI-------AIMSAAKEDDLVDYGGGVWAALIDVEVTDQVVGYFRKL-ADGTTSDLIPL 614
Query: 867 YLPKYSYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPE 925
LP+ ++AV V P +++A+ + LHAA HA + ++P+ C+ D+
Sbjct: 615 DLPEQRLHTRAVAYTVDPLALEAMGIRAADIPGALHAAEHAAIGLLPLIATCDRWDIGGV 674
Query: 926 CPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
H P + +YD H GG G +++
Sbjct: 675 STALHQDTQMPT-VFVYDGHSGGAGFAEE 702
>gi|15614327|ref|NP_242630.1| ATP-dependent RNA helicase [Bacillus halodurans C-125]
gi|10174382|dbj|BAB05483.1| ATP-dependent RNA helicase [Bacillus halodurans C-125]
Length = 764
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 258/767 (33%), Positives = 396/767 (51%), Gaps = 85/767 (11%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
++V L+ + +VH +I A+ A + P L + AL+ GI +LY+HQ +
Sbjct: 8 DLVHWLKTDDEIKKNIVHWHEIEAKPAQTMPFPTTLDIRIREALEKRGIGQLYTHQNTAY 67
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
S G++VV T T+SGK+LCYNLPVL+ + D SS ALY+FPTKALAQDQ L +
Sbjct: 68 ECSEKGEHVVAVTPTASGKTLCYNLPVLQQIRRDESSRALYLFPTKALAQDQKSELNEII 127
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
+ S+ YDGDT R +R ++ITNPDMLH +ILP+H ++ NL
Sbjct: 128 EEMGISVKCFTYDGDTAPNIRQAVRKAGHVVITNPDMLHSAILPHHTKWVAFFENL---- 183
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
++VVIDE H Y+G FG H A ++RRL R+ + YGS+P+F+ ++A
Sbjct: 184 ---------------KYVVIDELHTYRGVFGSHVANVIRRLKRIARY-YGSEPTFICTSA 227
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T ANP+E +L + LI N+G+P +K FV +NP V+N+
Sbjct: 228 TIANPQELASQLTG-HNVRLIDNNGAPSGKKHFVFYNP-----PVVNE----------PL 271
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYR 564
N S EV+ L + +++ ++ I F RSR E++LS+ +E+ ++ ++ YR
Sbjct: 272 NIRKSATVEVNRLAKKFLENNIQTIVFARSRVRVEVILSHLQELTKKKIGQ--QAVRGYR 329
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
GY+ + RR IER G + GV +TNALELG+D+G + V + G+PGSIAS WQQ+GR+
Sbjct: 330 GGYLPKQRREIERGLRNGDIIGVVSTNALELGVDIGQLQVCIMTGYPGSIASAWQQSGRA 389
Query: 625 GRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
GRR+ SL + VA P+DQY +++P+ + E I+ N +L HL CAA E P
Sbjct: 390 GRRQHESLTLLVAGSSPIDQYMIQHPDYFLEKSPESVRINRDNLIILVDHLKCAAYELP- 448
Query: 685 SLIYDEKYFGSGLS-SGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIES 743
F G + G+ + +L+ + L + Y ++ P+H IS+R+
Sbjct: 449 --------FKEGETLDGVEIEEILEFLTEEHVLHHRGSKW-YWMNDGFPAHGISLRSASQ 499
Query: 744 ERYEVI---DMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKAD 800
E +I D+ + +V+ E++ A +++ A+Y+HQG Y V+ L+ K A ++
Sbjct: 500 ENVVIIDQSDIANPQVIGEMDRFSAMTLLHDEAIYLHQGVQYQVELLDWEEKKAFVREVK 559
Query: 801 LKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQA------LACTVTTTWFGFYRLW 854
++YFT N A K+ ++ TK T QA + T F +L
Sbjct: 560 VEYFTD-----------ANLAVQLKVLEEDETKETRQATIAFGDVMVNAKATLFKKIKLS 608
Query: 855 R----GSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHV 910
GSG I +LP+ + A WI + +N L +H + HV
Sbjct: 609 TFENIGSGPI------HLPEEELHTNATWISFSDDLIERFSEN-GLDQALLGLAHVVQHV 661
Query: 911 VPIYVRCNFSDL--APECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
P+YV C+ SDL P+ H R + +YDR+PGG G++K V
Sbjct: 662 APVYVMCDRSDLHVVPQIKADHSER---PTLFIYDRYPGGVGLAKNV 705
>gi|62389204|ref|YP_224606.1| DEAD/DEAH box helicase [Corynebacterium glutamicum ATCC 13032]
gi|41324537|emb|CAF18877.1| DEAD/DEAH box helicase [Corynebacterium glutamicum ATCC 13032]
Length = 798
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 249/749 (33%), Positives = 392/749 (52%), Gaps = 55/749 (7%)
Query: 216 SQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVV 275
S+ + H+ + A KA V+ P + + + AL + GI+KL+SHQ ++ + G++VVV
Sbjct: 31 SESTLTHMVTLPASKAKYVDWPSWVPASLRDALVNRGINKLFSHQEQTAHLAWNGQHVVV 90
Query: 276 ATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDA--SIDI 333
AT TSSGKSL Y LP+L AL D ++ ALY+ PTKAL DQL + + + I+
Sbjct: 91 ATGTSSGKSLGYQLPILSALGTDPTACALYLTPTKALGSDQLTSTSTLLRDIPDFHPINP 150
Query: 334 GVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVY 393
YDGDT + R +RD +R + TNPDM+H S+L H +++R+L +L+
Sbjct: 151 APYDGDTPSEARSGIRDLSRFVFTNPDMVHASMLANHPRWARLLRHLK------------ 198
Query: 394 LIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHC 453
F+VIDE HAY+G FG + +++LRRL R+ + YGS P+ + ++ATS++P H
Sbjct: 199 -------FIVIDECHAYRGVFGANVSMVLRRLLRIAA-FYGSHPTVILASATSSDPEIHA 250
Query: 454 MELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISE 513
L + ++ + DG+P ++ +LW P + + N A + +E
Sbjct: 251 SRLLG-APVKAVTEDGAPTGERTVLLWEP----------GFIEGAEGENGAPVRRAASTE 299
Query: 514 VSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETA-PHLVDSICVYRAGYVAEDR 572
+ + A ++ G R + F RSR+ E+V +E L P + YRAGY+AEDR
Sbjct: 300 AANIMATLISEGARTLTFVRSRRQAEIVALRAQEELSTLGRPDFARRVASYRAGYLAEDR 359
Query: 573 RRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSL 632
RR+ER G L GVA+TNALELGIDVG +D + GFPG++AS WQQAGR+GRR + SL
Sbjct: 360 RRLERLLDDGTLLGVASTNALELGIDVGGLDAVVTAGFPGTVASFWQQAGRAGRRGQGSL 419
Query: 633 AVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKY 692
V VA + P+D Y + +P L + P+E D N V+ H+ CAA+E PL+ +
Sbjct: 420 VVLVARDEPMDTYLVHHPAALLEKPVEAAVFDPTNPHVIRGHVYCAAVEKPLTEA-EVAA 478
Query: 693 FGSGLS------SGITTLKNRGYLSSD-PSLDSSAKIFEYIGHEKMPSHTISIRAIESER 745
FG+ G+ + RG+ + + P + ++ H++ +S+R
Sbjct: 479 FGAQKVVEKLEIEGLLRKRPRGWFAVEKPMSEDPDELSPDSAHQQ-----VSLRGGSGSE 533
Query: 746 YEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFT 805
+ ++D+ +L I+ +KA Q + GAVY+HQG ++++ EL+L +AL + Y T
Sbjct: 534 FMIVDITDGRLLGTIDSAKAMSQTHPGAVYLHQGESFVIDELDLEENLALARPELPDYTT 593
Query: 806 KTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFY-RLWRGSGIIFDTV 864
R TDI ++ +A D + VT G+ RL G D
Sbjct: 594 YARSDTDIRIT---SAPLEDEVFDAGGGLWVANVEVQVTDRVTGYVTRL--SDGTTLDAT 648
Query: 865 ELYLPKYSYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLA 923
LYLP +++AV + P +++A+ LHAA HA + ++P+ C+ D+
Sbjct: 649 PLYLPPQILQTRAVAYTIDPLALEAMGIPAADIPGALHAAEHAAIGMLPLLATCDRWDIG 708
Query: 924 PECPNPHDSRYFPERILLYDRHPGGTGVS 952
H +P + +YD GG G +
Sbjct: 709 GVSTALHADTGYPT-VFVYDGMDGGAGFA 736
>gi|384265818|ref|YP_005421525.1| ATP-dependent helicase yprA [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|387898825|ref|YP_006329121.1| hypothetical protein MUS_2466 [Bacillus amyloliquefaciens Y2]
gi|380499171|emb|CCG50209.1| ATP-dependent helicase yprA [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|387172935|gb|AFJ62396.1| conserved hypothetical protein YprA [Bacillus amyloliquefaciens Y2]
Length = 748
Score = 407 bits (1047), Expect = e-110, Method: Compositional matrix adjust.
Identities = 247/756 (32%), Positives = 400/756 (52%), Gaps = 68/756 (8%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E+++ L+ + +VH + R+A + +P+ + N ++AL+ GI +L++HQ +
Sbjct: 8 ELIQELK----NHENIVHWHEEEPREAKTMPMPEQVDPNIRAALEKRGIERLFTHQYSAF 63
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
G+++V T T+SGK+LCYNLPVL++++ D SS ALY+FPTKALAQDQ L +
Sbjct: 64 QTVQNGESIVAVTPTASGKTLCYNLPVLQSIAEDASSRALYLFPTKALAQDQKSELNEII 123
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
I YDGDT+ R +R ++ITNPDMLH +ILP+H ++ + NL
Sbjct: 124 DETGMDIKSFTYDGDTSPAIRQKVRKAGHIVITNPDMLHSAILPHHTKWVSLFENL---- 179
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
+++VIDE H Y+G FG H A ++RRL R+C+ YGS PSF+ ++A
Sbjct: 180 ---------------KYIVIDELHTYRGVFGSHVANVIRRLMRICA-FYGSKPSFICTSA 223
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T ANP E +L S + LI ++G+P +K F +NP ++NK
Sbjct: 224 TIANPMELAEQLTGKS-VRLIDDNGAPAGRKHFAFYNP-----PIINKP----------L 267
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYR 564
+ S EV+ L +++ ++ I F RSR E++LS+ +EI+++ S+ YR
Sbjct: 268 HIRKSATVEVNELAKTFLKNKIQTIVFARSRVRVEIILSHIQEIVKKEIG--AKSVRGYR 325
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
GY+ ++RR IER G + GV +TNALELG+D+G + V + G+PGS+AS WQQAGR+
Sbjct: 326 GGYLPKERRDIERGLRDGSILGVVSTNALELGVDIGQLQVCVMTGYPGSVASAWQQAGRA 385
Query: 625 GRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
GRR+ +L V VA P+DQY +++P+ FK E I+ N +L HL CAA E P
Sbjct: 386 GRRQGEALIVMVANSDPIDQYIVRHPDYFFKRSPESARINPDNLIILVDHLKCAAYELPF 445
Query: 685 SLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESE 744
++ FG + I YL + L + + + + E P+ IS+R+ E
Sbjct: 446 RA---DETFGENDARDILE-----YLEEEGVLHENRERYHW-ASESFPASNISLRSASQE 496
Query: 745 RYEVIDMQSN---EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADL 801
++D +++ E++ A +++ A+Y+H+G Y V++L+ K A +K D+
Sbjct: 497 NVVIVDRSETADVKIIGEMDRFSAMTLLHDEAIYLHEGVQYQVEKLDWDHKKAYVRKVDV 556
Query: 802 KYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIF 861
+Y+T + V + + K + T AL + GSG I
Sbjct: 557 EYYTDANLAVQLKVLDIDRTDSRKKTALHFGDVTVNALPTIFKKIKMTTFENI-GSGPI- 614
Query: 862 DTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSD 921
+LP+ + A W+++ ++ + E+ + L +H L H+VP+YV C+ +D
Sbjct: 615 -----HLPEEELHTSAAWLELKETDSEIGEK--TLEQLLLGIAHVLQHIVPVYVMCDRND 667
Query: 922 --LAPECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
+ P+ H P I LYD +PGG G++ +V
Sbjct: 668 VHVVPQIKAAHTG--LPT-IFLYDHYPGGIGLADEV 700
>gi|257057534|ref|YP_003135366.1| helicase family protein with metal-binding cysteine cluster
[Saccharomonospora viridis DSM 43017]
gi|256587406|gb|ACU98539.1| helicase family protein with metal-binding cysteine cluster
[Saccharomonospora viridis DSM 43017]
Length = 798
Score = 407 bits (1047), Expect = e-110, Method: Compositional matrix adjust.
Identities = 256/744 (34%), Positives = 380/744 (51%), Gaps = 60/744 (8%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+ HV ++ A + E P+ + D + L+++GI + ++HQAE+ + NVVVAT T
Sbjct: 27 VTHVANLPAAEPRHTEWPEWVPDRVRDVLRNSGIDRPWAHQAEAASLAWDRHNVVVATGT 86
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGD 339
+SGKSL Y LP L L D ++ LY+ PTKALA DQLRA+ M + YDGD
Sbjct: 87 ASGKSLTYQLPALSTLVTDGKATVLYLSPTKALATDQLRAVSDMDIE---GVRPATYDGD 143
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T + +R W+RD+AR + TNPDMLH +LP H +++R F +
Sbjct: 144 TPRGERPWVRDHARWVFTNPDMLHRGVLPAHPRWARF-------------------FRGL 184
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
+VV+DE HAY+G FG H AL+LRRL R+ H YG++P+F+ ++AT+A P E L
Sbjct: 185 TYVVVDECHAYRGVFGSHVALLLRRLRRIARH-YGAEPTFILTSATTAEPAEFATRLIGQ 243
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
+ + + D SP + LW P L T +D A S +E + + A
Sbjct: 244 DCVAVTE-DTSPRGARTVALWEPP------LLPELTGEND----APVRRSAGAEAARILA 292
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDF 579
E+V G R +AF RSR+ EL R IL E AP LVD + YRAGY+ E+RR +E
Sbjct: 293 ELVIEGARTLAFVRSRRGAELTALGARRILAEVAPELVDKVAAYRAGYLPEERRELESAL 352
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFE 639
G+L GVA TNALELG+D+ +D + G+PG++AS WQQ+GR+GR +L V+VA +
Sbjct: 353 LEGRLLGVATTNALELGVDISGLDAVVLAGYPGTLASFWQQSGRAGRAGADALVVFVARD 412
Query: 640 GPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSS 699
PLD Y +PE L + P+E +D N VL HL CAA E L D FG+ +
Sbjct: 413 DPLDTYLAHHPEALLERPVESAVLDPTNPYVLAPHLACAAAESALKST-DLDLFGATEAR 471
Query: 700 GI-TTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLE 758
+ L L PS Y + P H + IR +E+ V++ ++ +L
Sbjct: 472 AVLDDLVAEKVLRRRPS-------GWYWTAREQPHHEVDIRGSGAEQVAVVEADTSRLLG 524
Query: 759 EIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGG 818
++ A V+ GAVY+H+G Y+V EL+L +A D ++ T RD DI +
Sbjct: 525 TVDAVSACSTVHPGAVYLHRGEPYVVDELDLEHGVAFVHAEDPEWNTSARDVVDIEI--- 581
Query: 819 NNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAV 878
+ + T VT+ G+ R SG + D + L LP+ ++AV
Sbjct: 582 ----LDVVKRHVHDGVTVNLGHVAVTSRVVGYLRRLP-SGEVLDHIPLDLPEQVLHTRAV 636
Query: 879 WIQV-------PQSVKAVVEQNFSFRSG-LHAASHALLHVVPIYVRCNFSDLAPECPNPH 930
W + P+ + + G LHAA HA + ++P++ C+ D+ H
Sbjct: 637 WYTISEELLCGPRRRPGITGVEPARVPGALHAAEHAAIGLLPLFATCDRWDIGGVSTAVH 696
Query: 931 DSRYFPERILLYDRHPGGTGVSKQ 954
+ + ++D HPGG G + +
Sbjct: 697 -ADTGEATVFVHDGHPGGAGFADR 719
>gi|19551557|ref|NP_599559.1| helicase [Corynebacterium glutamicum ATCC 13032]
gi|21323071|dbj|BAB97700.1| Distinct helicase family with a unique C-terminal domain including
a metal-binding cysteine cluster [Corynebacterium
glutamicum ATCC 13032]
gi|385142484|emb|CCH23523.1| helicase [Corynebacterium glutamicum K051]
Length = 785
Score = 407 bits (1047), Expect = e-110, Method: Compositional matrix adjust.
Identities = 249/749 (33%), Positives = 392/749 (52%), Gaps = 55/749 (7%)
Query: 216 SQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVV 275
S+ + H+ + A KA V+ P + + + AL + GI+KL+SHQ ++ + G++VVV
Sbjct: 18 SESTLTHMVTLPASKAKYVDWPSWVPASLRDALVNRGINKLFSHQEQTAHLAWNGQHVVV 77
Query: 276 ATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDA--SIDI 333
AT TSSGKSL Y LP+L AL D ++ ALY+ PTKAL DQL + + + I+
Sbjct: 78 ATGTSSGKSLGYQLPILSALGTDPTACALYLTPTKALGSDQLTSTSTLLRDIPDFHPINP 137
Query: 334 GVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVY 393
YDGDT + R +RD +R + TNPDM+H S+L H +++R+L +L+
Sbjct: 138 APYDGDTPSEARSGIRDLSRFVFTNPDMVHASMLANHPRWARLLRHLK------------ 185
Query: 394 LIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHC 453
F+VIDE HAY+G FG + +++LRRL R+ + YGS P+ + ++ATS++P H
Sbjct: 186 -------FIVIDECHAYRGVFGANVSMVLRRLLRIAA-FYGSHPTVILASATSSDPEIHA 237
Query: 454 MELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISE 513
L + ++ + DG+P ++ +LW P + + N A + +E
Sbjct: 238 SRLLG-APVKAVTEDGAPTGERTVLLWEP----------GFIEGAEGENGAPVRRAASTE 286
Query: 514 VSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETA-PHLVDSICVYRAGYVAEDR 572
+ + A ++ G R + F RSR+ E+V +E L P + YRAGY+AEDR
Sbjct: 287 AANIMATLISEGARTLTFVRSRRQAEIVALRAQEELSTLGRPDFARRVASYRAGYLAEDR 346
Query: 573 RRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSL 632
RR+ER G L GVA+TNALELGIDVG +D + GFPG++AS WQQAGR+GRR + SL
Sbjct: 347 RRLERLLDDGTLLGVASTNALELGIDVGGLDAVVTAGFPGTVASFWQQAGRAGRRGQGSL 406
Query: 633 AVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKY 692
V VA + P+D Y + +P L + P+E D N V+ H+ CAA+E PL+ +
Sbjct: 407 VVLVARDEPMDTYLVHHPAALLEKPVEAAVFDPTNPHVIRGHVYCAAVEKPLTEA-EVAA 465
Query: 693 FGSGLS------SGITTLKNRGYLSSD-PSLDSSAKIFEYIGHEKMPSHTISIRAIESER 745
FG+ G+ + RG+ + + P + ++ H++ +S+R
Sbjct: 466 FGAQKVVEKLEIEGLLRKRPRGWFAVEKPMSEDPDELSPDSAHQQ-----VSLRGGSGSE 520
Query: 746 YEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFT 805
+ ++D+ +L I+ +KA Q + GAVY+HQG ++++ EL+L +AL + Y T
Sbjct: 521 FMIVDITDGRLLGTIDSAKAMSQTHPGAVYLHQGESFVIDELDLEENLALARPELPDYTT 580
Query: 806 KTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFY-RLWRGSGIIFDTV 864
R TDI ++ +A D + VT G+ RL G D
Sbjct: 581 YARSDTDIRIT---SAPLEDEVFDAGGGLWVANVEVQVTDRVTGYVTRL--SDGTTLDAT 635
Query: 865 ELYLPKYSYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLA 923
LYLP +++AV + P +++A+ LHAA HA + ++P+ C+ D+
Sbjct: 636 PLYLPPQILQTRAVAYTIDPLALEAMGIPAADIPGALHAAEHAAIGMLPLLATCDRWDIG 695
Query: 924 PECPNPHDSRYFPERILLYDRHPGGTGVS 952
H +P + +YD GG G +
Sbjct: 696 GVSTALHADTGYPT-VFVYDGMDGGAGFA 723
>gi|254586279|ref|XP_002498707.1| ZYRO0G16698p [Zygosaccharomyces rouxii]
gi|238941601|emb|CAR29774.1| ZYRO0G16698p [Zygosaccharomyces rouxii]
Length = 1072
Score = 407 bits (1047), Expect = e-110, Method: Compositional matrix adjust.
Identities = 261/770 (33%), Positives = 400/770 (51%), Gaps = 78/770 (10%)
Query: 206 MVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIM 265
M+E L K Q+ + I R A E+ L + AL+ I Y+HQA++I
Sbjct: 236 MIEELEKSEMYTNQISNHYVIPPRSAQYKELEFELSEEIYQALE---IENFYTHQADAIS 292
Query: 266 ASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTK 325
A G++V++ T TSSGKSL Y L L+ L D +S+ +Y+FPTKALAQDQ RA +
Sbjct: 293 AIHRGEHVIITTSTSSGKSLVYQLSALDLLLKDPNSTCMYIFPTKALAQDQKRAFQELLS 352
Query: 326 AFD--ASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLI 383
A++ + YDGDT +R+ +R NA+++ TNPDM+H SILP H + L NL+L
Sbjct: 353 KIPRLANVVVDTYDGDTEPAERLHIRKNAKVIFTNPDMVHTSILPNHPNWRSFLYNLKL- 411
Query: 384 AFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDP-SFVFS 442
VV+DE H YKG FG H AL+LRRL RLC H Y ++ V
Sbjct: 412 ------------------VVVDELHTYKGLFGSHVALVLRRLLRLCEHYYENNALRCVSC 453
Query: 443 TATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRN 502
+AT +P +H ++ + + LI DGSP K VLWNP + V +
Sbjct: 454 SATLKHPVKHMKDMFGIHDVVLIHEDGSPRGAKHLVLWNPPLLSQHVRRREDF------- 506
Query: 503 AANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEE-TAPHLVDSIC 561
I E + + +++ +R IAFC R++CEL++ R+I E+ P ++ +
Sbjct: 507 --------IRESAKILVQLMLKNVRTIAFCFVRRICELLMKEVRKIFEDLDMPEMITEVM 558
Query: 562 VYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQA 621
YR GY A DRR+IER+ F G L V +TNALELGID+G +D L GFP S+A+ QQ+
Sbjct: 559 SYRGGYAASDRRKIEREMFHGNLRAVISTNALELGIDIGGLDSVLMCGFPLSMANFHQQS 618
Query: 622 GRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCH----IDAQNHKVLEQHLVC 677
GR+GRR + S+ + VA + P+DQ+++ + E+L + +D N +LE H+ C
Sbjct: 619 GRAGRRNKDSMTLVVASDSPVDQHYLAHSEELIDGDNSNTYQDLVLDFDNILILEGHIQC 678
Query: 678 AALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKM---PSH 734
AA E P+++ D++YF S I + LD S Y H + PS
Sbjct: 679 AAFELPINIDRDKEYFKEEHLSKICQER----------LDHSKD--GYHTHNRFLPWPSK 726
Query: 735 TISIRAIESERYEVIDMQSNE--VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSK 792
+S+R +E + + V+D+ + V+EEIE S+ F +Y+G +++HQG+ YLVKE N
Sbjct: 727 LVSLRGVEEDHFAVVDITNGRSTVIEEIEASRTSFTLYDGGIFIHQGYPYLVKEFNPDEC 786
Query: 793 IALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYR 852
A Q+ D+ + T RD+TD+ + I + + T FGF++
Sbjct: 787 YATVQRVDVDWVTNQRDFTDV-----DPQEIEMIRSLETSDIPIYFGKIKTTIIVFGFFK 841
Query: 853 LWRGSGIIFDTVELYLPKYSYESQAVWIQVPQ-SVKAVVEQNFSFRSGLHAASHALLHVV 911
+ + II D VE + P S+ WI +P+ +V+ + + +H+A HA++ ++
Sbjct: 842 MDKYRRII-DAVETHNPPVIINSKGFWIDIPKRAVEICHSKQLNLAGAIHSAQHAIMGLL 900
Query: 912 PIYVRCNFSDLAPECPNPHDS-------RYFPERILLYDRHPG--GTGVS 952
P ++ ++ EC P R P R++ YD G G+G+S
Sbjct: 901 PRFIVAGVDEIQTECKAPEKEFAERQTKRKRPARLVFYDAKGGKYGSGLS 950
>gi|403721863|ref|ZP_10944714.1| putative ATP-dependent helicase [Gordonia rhizosphera NBRC 16068]
gi|403206966|dbj|GAB89045.1| putative ATP-dependent helicase [Gordonia rhizosphera NBRC 16068]
Length = 775
Score = 407 bits (1047), Expect = e-110, Method: Compositional matrix adjust.
Identities = 246/740 (33%), Positives = 381/740 (51%), Gaps = 55/740 (7%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+ H+ I++R A VE P+ + + +A +GI + ++HQA + K+V + T T
Sbjct: 25 LTHLSVIASRTAAFVEWPEWVPADLVAAFIESGIDRPWTHQAAAADLLYHRKHVALCTGT 84
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFD--ASIDIGVYD 337
+SGKSL Y +P+L L D S+ALY+ PTKAL DQ+R+L ++ + YD
Sbjct: 85 ASGKSLAYQMPILSTLMKDPHSTALYLSPTKALGADQIRSLTSLLSGHREFTHLQPCAYD 144
Query: 338 GDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFL 397
GDT + R W R ++R + TNPDMLH+ IL H ++ F
Sbjct: 145 GDTDVEIRQWARAHSRWIFTNPDMLHIGILAGHARWRHF-------------------FR 185
Query: 398 FIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELA 457
+R++V+DE H Y+G FG HTAL+LRRL R+ G+DP+ + ++AT A P + L
Sbjct: 186 HLRYIVVDECHHYRGVFGSHTALVLRRLLRIARSA-GADPTVIGTSATMAEPADALTRLI 244
Query: 458 NLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYL 517
+ +++ DGSP ++ LW P L +V + + A S +E + L
Sbjct: 245 GEPAVGVVE-DGSPRGERTVALWEP-DFLPAVTGE---------HGAPVRRSAGAESARL 293
Query: 518 FAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIER 577
A+ V G R + F RSR+ EL R +L ++AP LVD + YRAGY+A+DRRR+E+
Sbjct: 294 LADFVVEGARTLCFLRSRRGVELTARQARHLLAQSAPELVDRVAAYRAGYLADDRRRLEQ 353
Query: 578 DFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERP--SLAVY 635
G L GVA TNALELG+D+ +D + G+PG++AS WQQAGR+GR+ SL V
Sbjct: 354 AISSGDLVGVATTNALELGVDISGLDAVIVGGYPGTVASFWQQAGRAGRQRTSGDSLVVL 413
Query: 636 VAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGS 695
VA + PLD Y + +PE L P+E D N +L HL+CAA E PL D++
Sbjct: 414 VARDDPLDTYLVHHPEALLSRPVEATVTDPTNPYILTPHLLCAAAELPLQ---DKEIEAW 470
Query: 696 GLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNE 755
G + L + G L K Y+ P I IR + ++D +++
Sbjct: 471 GAGEAVAALASDGMLKRR-------KAGWYVAPGVEPHGDIDIRGGIGGQVLIVDTTTSQ 523
Query: 756 VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHV 815
+L ++ +A V+ GA+++HQG +Y++ EL+LS +AL + + T R+ TDI V
Sbjct: 524 LLGTVDTGRAPSTVHPGALHIHQGQSYVIDELDLSDGLALAHPEEPDWTTAARETTDITV 583
Query: 816 SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYES 875
+ + + T + VT G+ R SG + D VEL +P + +
Sbjct: 584 T-------NVVDRRDCDALTVALVDVDVTHQVVGYLRTLL-SGEVLDAVELDMPPQTLST 635
Query: 876 QAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRY 934
+AV + P++++ V F LHAA HA + ++P+ C+ D+ N H
Sbjct: 636 RAVMYTITPEALEEVGVTVGRFPGALHAAEHAAIGLLPLVASCDRWDIGGLSTNSHPDTA 695
Query: 935 FPERILLYDRHPGGTGVSKQ 954
P + +YD + GG G + +
Sbjct: 696 LPT-VFVYDGYLGGAGFADR 714
>gi|408679038|ref|YP_006878865.1| putative helicase [Streptomyces venezuelae ATCC 10712]
gi|328883367|emb|CCA56606.1| putative helicase [Streptomyces venezuelae ATCC 10712]
Length = 794
Score = 407 bits (1046), Expect = e-110, Method: Compositional matrix adjust.
Identities = 261/787 (33%), Positives = 392/787 (49%), Gaps = 67/787 (8%)
Query: 176 KRARRSQSSTSSSHSFQRRCSDKSQLLPLEMVEHLRKGIGSQGQMVHVEDISARKAVLVE 235
+R RR T S S P +++ L G ++ H E + AR+
Sbjct: 5 QRPRRPAGDTGSRPS------------PGMVLDRLSSGESRAARITHTEHMPAREGRHAV 52
Query: 236 IPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL 295
P + +A+++ GI ++HQAE+ +L G++VV+AT T+SGKSL Y PVL L
Sbjct: 53 WPHRIRPEVIAAIEAAGIEHPWAHQAEAAEHALDGESVVIATGTASGKSLAYLAPVLTTL 112
Query: 296 ------SHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLR 349
+ ++ALY+ PTKALA DQ RA+ + I VYDGDT ++R W+R
Sbjct: 113 LDGAEAPNGRGTTALYLSPTKALAADQRRAVRELAAPLGNRIRPAVYDGDTPVEEREWVR 172
Query: 350 DNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHA 409
A ++TNPDMLH ILP H +++ L +LR +VVIDE H
Sbjct: 173 QYANYVLTNPDMLHRGILPSHPRWASFLRSLR-------------------YVVIDECHT 213
Query: 410 YKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDG 469
Y+G FG H A +LRRL R+C+ YGS+P F+ ++ATSA P L L E + +D
Sbjct: 214 YRGVFGSHVAQVLRRLRRICAR-YGSEPVFLLASATSAEPALAAGRLTGLPVTE-VSDDA 271
Query: 470 SPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCI 529
SP + +F LW P T++ R A + ++ +E + L ++ + G+R +
Sbjct: 272 SPRGELVFALWEP----------PLTELHGERGAPVRRTA-TAETADLLTDLTRQGVRSV 320
Query: 530 AFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAA 589
AF RSR+ EL+ +E L ET L + YR GY+ E+RR +ER G+L G+AA
Sbjct: 321 AFVRSRRGAELISVIAQERLAETDRSLARRVAAYRGGYLPEERRALERALHSGELLGLAA 380
Query: 590 TNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKY 649
T ALELG+DV +D + G+PG+ ASLWQQAGR+GR +LA+ VA + PLD + + +
Sbjct: 381 TTALELGVDVSGLDAVVIAGYPGTRASLWQQAGRAGRSGEGALAILVARDDPLDTFLVHH 440
Query: 650 PEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGY 709
PE +F P+E +D N VL HL AA E PL+ D FG + + L+ G
Sbjct: 441 PEAIFDQPVESTVLDPDNPYVLAPHLCAAAAELPLTE-PDLALFGPAVPELLPQLEGAGL 499
Query: 710 LSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQV 769
L Y + + IR +++ + +L ++E+ + V
Sbjct: 500 LRRR-------STGWYWTRRERAADLTDIRGGGGSPVRIVESGTGRLLGTVDEAASHTAV 552
Query: 770 YEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKD 829
+EGAV++HQG TYLV+EL+L +AL ++A Y T RD T I V +
Sbjct: 553 HEGAVHLHQGRTYLVRELDLKDSVALVEEAAPPYSTTARDTTSIAVL--DTETEIPWGAG 610
Query: 830 QLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAV 889
+L + + VT F R +G + +L LP + ++AVW V +
Sbjct: 611 RLCFGSVE-----VTNQVVSFLRRRLITGEVLGETKLDLPPRTLRTRAVWWTVTEDQLDA 665
Query: 890 VEQNFSFRSG-LHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGG 948
G LHAA HA + ++P++ C+ D+ H P + +YD HPGG
Sbjct: 666 ARITPEILGGALHAAEHASIGMLPLFATCDRWDIGGVSVPLHPDTLLPT-VFVYDGHPGG 724
Query: 949 TGVSKQV 955
G +++
Sbjct: 725 AGFAERA 731
>gi|284028559|ref|YP_003378490.1| DEAD/DEAH box helicase domain-containing protein [Kribbella flavida
DSM 17836]
gi|283807852|gb|ADB29691.1| DEAD/DEAH box helicase domain protein [Kribbella flavida DSM 17836]
Length = 779
Score = 407 bits (1045), Expect = e-110, Method: Compositional matrix adjust.
Identities = 260/759 (34%), Positives = 391/759 (51%), Gaps = 65/759 (8%)
Query: 206 MVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIM 265
+++ L G G ++ HVE + AR E P + + L G+ ++HQ +
Sbjct: 18 VLKRLAAGPGRAERLTHVESVPARAGRTGEWPRWVPPEVLTQLADAGVVAPWTHQVATAE 77
Query: 266 ASLAGKNVVVATMTSSGKSLCYNLPVLEALS-------HDLSSSALYMFPTKALAQDQLR 318
A+ G++VVVAT T+SGKSL Y LP LS H ++S LY+ PTKALA DQLR
Sbjct: 78 AAYGGRHVVVATGTASGKSLGYLLPAFATLSIAHAASPHRRAASVLYLSPTKALAHDQLR 137
Query: 319 ALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILS 378
A +++ + DGD+ + +R W RD+A +++NPDMLH S+LP H +++R L
Sbjct: 138 A---VSQFKVEGLRATTLDGDSERTERDWARDHATYVLSNPDMLHRSLLPNHQRWARFLG 194
Query: 379 NLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPS 438
L+ +VV+DE H Y+G FG H A +LRRL R+C+ YG+ P
Sbjct: 195 CLQ-------------------YVVVDECHHYRGVFGAHVAGVLRRLRRVCAQ-YGAHPV 234
Query: 439 FVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMD 498
FV ++AT A P L + +E++ +DGSP F LW P L S+ +
Sbjct: 235 FVCASATVAEPAVSGERLTGVPMVEVV-DDGSPRGGISFGLWEPP--LTSLKGE------ 285
Query: 499 DTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVD 558
N A S +EV+ L ++V G+R +AF RSR+ E V R+ L E P L D
Sbjct: 286 ---NGAPVRRSATAEVADLLTDLVVSGVRTVAFVRSRRGAETVAMTARDNLAEVDPALAD 342
Query: 559 SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLW 618
+ YRAGY+ E+RRR+E G+L GVAATNALELGID+ +D L G+PG+ ASLW
Sbjct: 343 QVSAYRAGYLPEERRRLESMLQSGELTGVAATNALELGIDIAGLDAVLLSGWPGTRASLW 402
Query: 619 QQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCA 678
QQAGR+GR +LA+ VA + PLD Y +++P+ +F P+E + +N VL L A
Sbjct: 403 QQAGRAGRSGGDALALLVARDDPLDTYLVRHPQAIFGRPVEATVFNPENPYVLGPQLCAA 462
Query: 679 ALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISI 738
A E PL+ D + FGS S I L + L P + I I
Sbjct: 463 AQELPLTEA-DYEVFGSTTESVIGQLVRQRLLRQRPH-------GWFWTRRDRAVDAIDI 514
Query: 739 RAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQK 798
R+ + ++++ ++ +L ++ A V+ GAVY+H G +YLV+ L+L A+ +
Sbjct: 515 RSAGGKTVQIVEDRTGRLLGTVDGGSAHASVHAGAVYVHAGESYLVRSLDLDEHAAVVEP 574
Query: 799 ADLKYFTKTRDYTDIHV--SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRG 856
A Y T RD T+I + + +A+ + +L++ Q VT F R
Sbjct: 575 ASPDYTTFARDVTEIGILATEATSAWGSA----ELSRGWVQ-----VTNQVVSFQRKQVA 625
Query: 857 SGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVR 916
+G + D L LP+ + ++AVW VP V A + + HAA HA + ++P++
Sbjct: 626 TGDVLDEQPLDLPERTLRTKAVWWTVPDDVVAGLGLD-DVPGAAHAAEHASIGLLPLFAT 684
Query: 917 CNFSDLAPECPNPH-DSRYFPERILLYDRHPGGTGVSKQ 954
C+ D+ H D+ + +YD HPGG G ++
Sbjct: 685 CDRWDIGGVSTARHADTGRL--TVFVYDGHPGGAGFAEH 721
>gi|226183114|dbj|BAH31218.1| putative ATP-dependent helicase [Rhodococcus erythropolis PR4]
Length = 782
Score = 407 bits (1045), Expect = e-110, Method: Compositional matrix adjust.
Identities = 249/744 (33%), Positives = 394/744 (52%), Gaps = 55/744 (7%)
Query: 215 GSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVV 274
GS+ ++ + AR A E P+ + + AL + + HQ+E+ + GK+VV
Sbjct: 32 GSEKPLMFTAQLPARVAEFTEWPEWVHPSVVRALAEHSVRSPWIHQSEAADLAHEGKHVV 91
Query: 275 VATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDA---SI 331
VAT T+SGKSL Y LPVL A++ D ++ALY+ PTKAL DQLRA+L++T FD S
Sbjct: 92 VATGTASGKSLAYQLPVLTAMATDPLATALYLSPTKALGSDQLRAVLSLTD-FDVELRST 150
Query: 332 DIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTE 391
+ YDGDT+Q+ R W R+N+R L TNPDM+H+S+L H +++ NL+
Sbjct: 151 NASAYDGDTSQELRTWARENSRWLFTNPDMIHISLLRTHQRWAHFFRNLK---------- 200
Query: 392 VYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPRE 451
+V+IDE H+Y+G FG + AL++RRL R+ + YG++P+F+ ++AT+A+P
Sbjct: 201 ---------YVIIDECHSYRGVFGSNVALVIRRLRRIAA-RYGAEPTFILASATTADPGA 250
Query: 452 HCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPI 511
L E+ + DGSP + LW P L ++ ++ + + R A
Sbjct: 251 AASRLIGAHCSEVTE-DGSPHGPRTVALWEP-PLLEALTGENGSPV---RRPAG------ 299
Query: 512 SEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAED 571
+E + + A+++ G R + F RSR+ EL T+ +L E P L + + YRAGY+AED
Sbjct: 300 AEAARIMADLMIEGARTLTFVRSRRGAELTAMATKRLLAEVDPDLAERVASYRAGYLAED 359
Query: 572 RRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPS 631
RR +E G L G A TNALELG+D+ +D + GFPG++AS WQQAGRSGRR S
Sbjct: 360 RRELEAALADGTLLGAATTNALELGVDIAGLDAVVVAGFPGTVASFWQQAGRSGRRGEGS 419
Query: 632 LAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEK 691
L V +A + PLD Y + +P + P+E D N VL L+CAA+E PLS + +
Sbjct: 420 LVVLIARDDPLDTYLVHHPSAVLDKPVEATVTDPGNPYVLGPQLLCAAMELPLSDVEVDA 479
Query: 692 YFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDM 751
+ G +T L G + K ++ + P ++ IR + ++D
Sbjct: 480 F---GALEVLTRLSEEGKIRRR-------KHGWFVTADSNPHGSLDIRGGIGTQVAIVDG 529
Query: 752 QSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYT 811
+S +L ++ +A V+ GAV++HQG TY+V EL+L +AL + + T R+ T
Sbjct: 530 ESGRMLGTVDAGRAPATVHPGAVHIHQGETYVVDELDLDVGLALVHTENPDWTTSARETT 589
Query: 812 DIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKY 871
+I ++ ++ + VT G+ R SG + D++EL +P +
Sbjct: 590 EITIT-------EQLEHKNYGDIAVALVQVEVTHQVVGYLRRLT-SGEVLDSIELDMPAH 641
Query: 872 SYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPH 930
+ ++AV V P+ ++++ F LHAA HA + ++P+ C+ D+ H
Sbjct: 642 TLPTRAVMYTVTPELLESIGVPPERFPGSLHAAEHAAIGLLPLVAICDRGDIGGVSTAMH 701
Query: 931 DSRYFPERILLYDRHPGGTGVSKQ 954
P + +YD H GG G + +
Sbjct: 702 ADTGLPT-VFVYDGHAGGAGFADR 724
>gi|312110704|ref|YP_003989020.1| DEAD/DEAH box helicase [Geobacillus sp. Y4.1MC1]
gi|311215805|gb|ADP74409.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y4.1MC1]
Length = 753
Score = 407 bits (1045), Expect = e-110, Method: Compositional matrix adjust.
Identities = 255/761 (33%), Positives = 403/761 (52%), Gaps = 78/761 (10%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E+VE LR +V+ ++ ++A V +P+ L ++AL+ GI+ LY+HQA +
Sbjct: 8 ELVEQLR----DDPNVVYWHEMEPQEANTVPMPEHLDLRLRTALEKRGIASLYTHQAAAF 63
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
A G ++V T T+SGK+LCYNLPVL+A++ + + ALY+FPTKALAQDQ L +
Sbjct: 64 EAVRNGNHIVAVTPTASGKTLCYNLPVLQAIAENEHTRALYLFPTKALAQDQKSELHEII 123
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
+ I YDGDT R +R +++TNPDMLH +ILP+H ++ + NL
Sbjct: 124 EEMGVPIYSDTYDGDTPPGIRQKIRKAGHIIMTNPDMLHSAILPHHTKWVALFENL---- 179
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
R+VVIDE H Y+G FG H A ++RRL R+C YGS P+F+ ++A
Sbjct: 180 ---------------RYVVIDELHTYRGVFGSHVANVIRRLKRICE-FYGSRPTFICTSA 223
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T +N +E L + LI N+G+P +K FV +NP S
Sbjct: 224 TLSNCKEFAERLTG-EEMTLIDNNGAPRGRKHFVFYNPPVVHPSF--------------- 267
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYR 564
N S +EV+ L + +++G++ I F RSR EL+LS+ + ++++ +I YR
Sbjct: 268 NIRKSATAEVNKLAKQFLENGIQTIVFARSRVRVELILSHLQGLIKDQLGR--KTIRGYR 325
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
GY+ ++RR IE+ G++ GV +TNALELG+D+G + V + G+PG++AS WQQAGR+
Sbjct: 326 GGYLPKERREIEKGLRSGEIIGVVSTNALELGVDIGQLQVCIMTGYPGTVASTWQQAGRA 385
Query: 625 GRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
GRR SL + VA P+DQY +++PE F+ E I+ N +L HL CAA E P
Sbjct: 386 GRRHGDSLVIMVASSSPIDQYIVQHPEYFFQRSPETARINPDNILILVDHLKCAAYELPF 445
Query: 685 SLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESE 744
EK+ G + + +L+ L A + ++ + P+H IS+R+ E
Sbjct: 446 R--RGEKFGGVEVDEVLE------FLTEQKVLHHRAGKWYWMS-DAFPAHDISLRSASQE 496
Query: 745 RYEVIDMQ---SNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADL 801
+ID+ ++ V+ E++ A ++E A+Y+H+G Y V++L+ K A ++ ++
Sbjct: 497 NVVIIDISKTGNHRVIGEMDRFSAMTLLHEEAIYLHEGVQYQVEKLDWEEKKAYVREVNV 556
Query: 802 KYFTKTRDYTDIHV-SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGII 860
+YFT +HV N ++S + +A+A + GSG I
Sbjct: 557 EYFTDANLAVQLHVLEEDRNEQRPQLSL-HYGDVSVRAMATIFKKIKLSTFENI-GSGPI 614
Query: 861 FDTVELYLPKYSYESQAVWIQVPQSV----KAVVEQNFSFRSGLHAASHALLHVVPIYVR 916
LP+ + A WI++ + + +VEQ L S+ L H+VP++V
Sbjct: 615 ------RLPEEELHTTATWIELGEELAQMDAPMVEQ------ALVGISNVLRHLVPMFVM 662
Query: 917 CNFSDL--APECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
C+ +D+ P+ PH R I LYDR+PGG G+S+ V
Sbjct: 663 CDRTDIHVVPQMKAPHSGR---PTIFLYDRYPGGIGLSEAV 700
>gi|418246468|ref|ZP_12872863.1| DEAD/DEAH box helicase [Corynebacterium glutamicum ATCC 14067]
gi|354509420|gb|EHE82354.1| DEAD/DEAH box helicase [Corynebacterium glutamicum ATCC 14067]
Length = 785
Score = 407 bits (1045), Expect = e-110, Method: Compositional matrix adjust.
Identities = 253/757 (33%), Positives = 394/757 (52%), Gaps = 71/757 (9%)
Query: 216 SQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVV 275
S+ + H+ + A KA V+ P + + + AL + GI+KL+SHQ ++ + G++VVV
Sbjct: 18 SESTLTHMVTLPASKAKYVDWPSWVPASLRDALLNRGINKLFSHQEQTAHLAWNGQHVVV 77
Query: 276 ATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDA--SIDI 333
AT TSSGKSL Y LP+L AL D ++ ALY+ PTKAL DQL + + + I+
Sbjct: 78 ATGTSSGKSLGYQLPILSALGTDPTACALYLTPTKALGSDQLTSTSTLLRDIPDFHPINP 137
Query: 334 GVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVY 393
YDGDT + R +RD +R + TNPDM+H S+L H +++R+L +L+
Sbjct: 138 APYDGDTPSEARSGIRDLSRFVFTNPDMVHASMLANHSRWARLLRHLK------------ 185
Query: 394 LIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHC 453
F+VIDE HAY+G FG + ++++RRL R+ + YGS P+ + ++ATS++P H
Sbjct: 186 -------FIVIDECHAYRGVFGANVSMVIRRLLRIAA-FYGSHPTVILASATSSDPEIHA 237
Query: 454 MELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISE 513
L + ++ + DG+P ++ +LW P + + N A + +E
Sbjct: 238 SRLLG-APVKAVTEDGAPTGERTVLLWEP----------GFIEGAEGENGAPVRRAASTE 286
Query: 514 VSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETA-PHLVDSICVYRAGYVAEDR 572
+ + A ++ G R + F RSR+ E+V +E L P + YRAGY+AEDR
Sbjct: 287 AANIMATLISEGARTLTFVRSRRQAEIVALRAQEELSTLGRPDFARRVASYRAGYLAEDR 346
Query: 573 RRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSL 632
RR+ER G L GVA+TNALELGIDVG +D + GFPG++AS WQQAGR+GRR + SL
Sbjct: 347 RRLERLLDDGTLLGVASTNALELGIDVGGLDAVVTAGFPGTVASFWQQAGRAGRRGQGSL 406
Query: 633 AVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKY 692
V VA + P+D Y + +P L + P+E D N V+ H+ CAA+E PL+ +
Sbjct: 407 VVLVARDEPMDTYLVHHPAALLEKPVEAAVFDPTNPHVIRGHVYCAAVEKPLTEA-EVAA 465
Query: 693 FGSGLS------SGITTLKNRGY------LSSDP---SLDSSAKIFEYIGHEKMPSHTIS 737
FG+ G+ + RG+ +S DP S DS+ H++ +S
Sbjct: 466 FGAQKVVEKLEIEGLLRKRPRGWFAVEKPMSGDPDELSPDSA--------HQQ-----VS 512
Query: 738 IRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQ 797
+R + ++D+ +L I+ +KA Q + GAVY+HQG ++++ EL+L +AL +
Sbjct: 513 LRGGSGSEFMIVDISDGRLLGTIDSAKAMSQTHPGAVYLHQGESFVIDELDLEENLALAR 572
Query: 798 KADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFY-RLWRG 856
Y T R TDI ++ +A D + VT G+ RL
Sbjct: 573 PELPDYTTYARSDTDIRIT---SAPLEDEVFDAGGGLWVANVEVQVTDRVTGYVTRL--S 627
Query: 857 SGIIFDTVELYLPKYSYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYV 915
G D LYLP +++AV + P +++A+ LHAA HA + ++P+
Sbjct: 628 DGTTLDATPLYLPPQILQTRAVAYTIDPLALEAMGIPAADIPGALHAAEHAAIGMLPLLA 687
Query: 916 RCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVS 952
C+ D+ H +P + +YD GG G +
Sbjct: 688 TCDRWDIGGVSTALHADTGYPT-VFVYDGMDGGAGFA 723
>gi|407985393|ref|ZP_11165991.1| DEAD/DEAH box helicase family protein [Mycobacterium hassiacum DSM
44199]
gi|407373086|gb|EKF22104.1| DEAD/DEAH box helicase family protein [Mycobacterium hassiacum DSM
44199]
Length = 777
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 255/756 (33%), Positives = 392/756 (51%), Gaps = 71/756 (9%)
Query: 212 KGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGK 271
+ G+ + HV D+ AR P A G+ +SHQ + + +G+
Sbjct: 20 RSTGAHDPLRHVADLPARPGRPASWPTWADPEVVQAFVDRGVRTPWSHQLTAADLAHSGR 79
Query: 272 NVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDA-- 329
+VV++T T+SGKSL Y LP+L AL D + ALY+ PTKAL DQLRA +A+T+A A
Sbjct: 80 HVVISTGTASGKSLAYQLPILTALKQDPRARALYLSPTKALGHDQLRAAIALTEAVPALR 139
Query: 330 SIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVT 389
++ YDGD+ + R + R+ +R + +NPDM+H+S+L H +++ L +LR
Sbjct: 140 TVAPTAYDGDSPTEVRRFARERSRWIFSNPDMIHLSLLRNHARWAVFLRHLR-------- 191
Query: 390 TEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCS-HVYGSDPSFVFSTATSAN 448
++V+DE H Y+G FG + A++LRRL RLC+ + GS P+ + ++AT+A
Sbjct: 192 -----------YLVVDECHYYRGIFGSNVAMVLRRLLRLCARYSSGSGPTVILASATTAE 240
Query: 449 PREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTS 508
P L + E + DGSP + LW P + L ++ + N A
Sbjct: 241 PGATASRLIGQTVAE-VTEDGSPHGARTVALWEP-ALLDDLIGE---------NGAPVRR 289
Query: 509 SPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYV 568
S +E + + ++V G R + F RSR+ EL R LEE AP LVD++ YRAGY+
Sbjct: 290 SAGAEAARVMGDLVAEGARTLTFVRSRRGAELTALGARARLEERAPQLVDTVASYRAGYL 349
Query: 569 AEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRE 628
AEDRR +ER G+L G+A TNALELG+D+ +D + GFPGS+ S WQQAGR+GRR
Sbjct: 350 AEDRRALERALADGRLRGLATTNALELGVDIAGLDAVVLAGFPGSVTSFWQQAGRAGRRG 409
Query: 629 RPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLS--- 685
+ +L V +A + PLD Y + +P L PIE ID N VL L+CAA+E PL+
Sbjct: 410 QSALIVLIARDDPLDTYLVHHPSALLDRPIEQVVIDPTNPHVLGPQLLCAAVEMPLTEAE 469
Query: 686 -LIYD-EKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIES 743
++D E + + G+ + GY + P +D P + IR
Sbjct: 470 VRLWDAEAVVAALVDDGLLRRRPGGYFPA-PGID--------------PHPAVDIRGGSG 514
Query: 744 ERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKY 803
E+ +++ + +L +A V+ GAVY+HQG TY+V L+L + +A D Y
Sbjct: 515 EQIAILEADTGRMLGSTSAGRAPASVHPGAVYLHQGETYVVDSLDLEAGVAFVHAEDPGY 574
Query: 804 FTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDT 863
T R+ TDI V+G + + + T + +VT T G+ R R SG + D
Sbjct: 575 ATFARELTDIAVTG-------EGERKTVGAVTIGLVPVSVTNTVIGYLRR-RLSGEVLDF 626
Query: 864 VELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFR---SGLHAASHALLHVVPIYVRCNFS 920
+EL +P + ++ AV V + +A+ + R LHAA H+ + ++P+ C+
Sbjct: 627 IELDMPSRTLDTMAVMCTV--TPEALDDNGIDARRIPGALHAAEHSAIGLLPLVASCDRG 684
Query: 921 DLA--PECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
D+ P D P I +YD +PGG G +++
Sbjct: 685 DIGGLSTAIGPVDG--LPT-IFVYDGYPGGAGFAER 717
>gi|237786537|ref|YP_002907242.1| putative helicase [Corynebacterium kroppenstedtii DSM 44385]
gi|237759449|gb|ACR18699.1| putative helicase [Corynebacterium kroppenstedtii DSM 44385]
Length = 813
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 254/779 (32%), Positives = 401/779 (51%), Gaps = 72/779 (9%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E++E +R + +++H E + ARK E P L + L GI++ + HQ
Sbjct: 13 ELLESIRATF-PRSEILHTETLPARKGRHGEWPSWLPLDFHDHLVDQGIARPWVHQVRVA 71
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
A G + VVAT TSSGKSL Y +P+L L+ + +++ALY+ PTKALA DQL + MT
Sbjct: 72 NALWEGHDTVVATGTSSGKSLGYQMPILTTLAEEKNATALYLTPTKALANDQLAHVAGMT 131
Query: 325 KAFDA--SIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRL 382
+ + + IG YDGDT + R +RD+ + + TNPDM+ +S+L H ++ R+L NLR
Sbjct: 132 REVGSLRGVSIGGYDGDTPPEARRAIRDSVQWVFTNPDMMQLSVLGAHARWGRLLRNLR- 190
Query: 383 IAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFS 442
++V+DE HAY+G FG H +L LRRL RL + YG+ P FV +
Sbjct: 191 ------------------YIVVDECHAYRGMFGAHVSLFLRRLDRL-ARAYGASPVFVMA 231
Query: 443 TATSANPREHCMELANLSTLELIQ--NDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDT 500
+AT++ P H L + ++ +D SP ++ VLW P+ DM+
Sbjct: 232 SATASRPAVHASRLCGHDADDFVEVTDDASPAGERTVVLWEPSFL---------PDMEGE 282
Query: 501 RNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETA-PHLVDS 559
A + + E + + A +V G R + F RSR+ E V + E L P
Sbjct: 283 HGAPVRKPA-TQEAADVMANLVAQGARTLTFVRSRRSAETVAARASEALGRLGRPEDAAR 341
Query: 560 ICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQ 619
I YRAGY+AEDRR++E D GKL GVA TNALELG+D+G +D + G+PG+IAS WQ
Sbjct: 342 IAAYRAGYLAEDRRKLEHDLDNGKLLGVATTNALELGVDIGGLDSVVACGYPGTIASFWQ 401
Query: 620 QAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAA 679
QAGR+GRR + SL +A + P+D Y + +PE L SP+E + N V+ HL CAA
Sbjct: 402 QAGRAGRRGQGSLVTLIARDEPMDTYLVHHPEVLLGSPVEQTVFNPHNPYVMVPHLYCAA 461
Query: 680 LEHPLSLIYDEKY--FGSGLSS------GITTLKNRGYLSSDPSLDS------------- 718
+E PL+ DE+ +G+ S+ G+ + RG+ + + +++
Sbjct: 462 VERPLT---DEEIDQWGAWSSAEYLRDAGLLRRRQRGWFAVERPIEAMGAPDDAENRGVE 518
Query: 719 SAKIFEYIGHEKMP--SHTI-SIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVY 775
+A + + + P +H++ SIR + +++ + ++ I++ +A Q + GAVY
Sbjct: 519 AAGLGALLPPDISPVNAHSVVSIRGDDGGDVAIVEGDTGRLVGMIDQGRAMSQTHTGAVY 578
Query: 776 MHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTT 835
+HQG +Y+V +L++ +AL + + T R+ TDI V + +S +L
Sbjct: 579 LHQGDSYVVDDLSVDDGLALVHREAPAWTTWARENTDISV-------LSTLSSHELGDGV 631
Query: 836 AQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQV-PQSVKAVVEQNF 894
A T Y SG + D V L LP+ + + AV V P +++ +
Sbjct: 632 WLAFVEVEVTHQVVDYMRRMPSGEVLDVVSLDLPEQTLTTTAVAYTVEPSTLRRWGVEER 691
Query: 895 SFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSK 953
+ LHAA HA + ++P+ C+ D+ H P + +YD +PGG G ++
Sbjct: 692 DWPGSLHAAEHAAIGMLPLIATCDRWDIGGVSTALHQDTGLPT-VFVYDGYPGGAGFAE 749
>gi|336235150|ref|YP_004587766.1| DEAD/DEAH box helicase [Geobacillus thermoglucosidasius C56-YS93]
gi|335362005|gb|AEH47685.1| DEAD/DEAH box helicase domain protein [Geobacillus
thermoglucosidasius C56-YS93]
Length = 753
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 256/761 (33%), Positives = 402/761 (52%), Gaps = 78/761 (10%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E+VE LR +V+ ++ ++A V +P+ L ++AL+ GI+ LY+HQA +
Sbjct: 8 ELVEQLR----DDPNVVYWHEMEPQEANTVPMPEHLDLRLRTALEKRGIASLYTHQAAAF 63
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
A G ++V T T+SGK+LCYNLPVL+A++ + + ALY+FPTKALAQDQ L +
Sbjct: 64 EAVRNGNHIVAVTPTASGKTLCYNLPVLQAIAENEHTRALYLFPTKALAQDQKSELHEII 123
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
+ I YDGDT R +R +++TNPDMLH +ILP+H ++ + NL
Sbjct: 124 EEMGVPIYSDTYDGDTPPGIRQKIRKAGHIIMTNPDMLHSAILPHHTKWVALFENL---- 179
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
R+VVIDE H Y+G FG H A ++RRL R+C YGS P+F+ ++A
Sbjct: 180 ---------------RYVVIDELHTYRGVFGSHVANVIRRLKRICE-FYGSRPTFICTSA 223
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T +N +E L + LI N+G+P +K FV +NP S
Sbjct: 224 TLSNCKEFAERLTG-EEMTLIDNNGAPRGRKHFVFYNPPVVHPSF--------------- 267
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYR 564
N S +EV+ L + +++G++ I F RSR EL+LS+ + ++++ +I YR
Sbjct: 268 NIRKSATAEVNKLAKQFLENGIQTIVFARSRVRVELILSHLQGLIKDQLGR--KTIRGYR 325
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
GY+ ++RR IE+ G++ GV +TNALELG+D+G + V + G+PG++AS WQQAGR+
Sbjct: 326 GGYLPKERREIEKGLRSGEIIGVVSTNALELGVDIGQLQVCIMTGYPGTVASTWQQAGRA 385
Query: 625 GRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
GRR SL + VA P+DQY +++PE F+ E I+ N +L HL CAA E P
Sbjct: 386 GRRHGDSLVIMVASSSPIDQYIVQHPEYFFQRSPETARINPDNILILVDHLKCAAYELPF 445
Query: 685 SLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESE 744
EK+ G + + +L+ L A + ++ + P+H IS+R+ E
Sbjct: 446 R--RGEKFGGVEVDEVLE------FLTEQKVLHHRAGKWYWMS-DAFPAHDISLRSASQE 496
Query: 745 RYEVIDMQ---SNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADL 801
+ID+ ++ V+ E++ A ++E A+Y+H+G Y V++L+ K A ++ ++
Sbjct: 497 NVVIIDISKTGNHRVIGEMDRFSAMTLLHEEAIYLHEGVQYQVEKLDWEEKKAYVREVNV 556
Query: 802 KYFTKTRDYTDIHV-SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGII 860
+YFT +HV N ++S + +A+A + GSG I
Sbjct: 557 EYFTDANLAVQLHVLEEDRNEQRPQLSL-HYGDVSVRAMATIFKKIKLSTFENI-GSGPI 614
Query: 861 FDTVELYLPKYSYESQAVWI----QVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVR 916
LP+ + A WI ++ Q +VEQ L S+ L H+VP++V
Sbjct: 615 ------RLPEEELHTTATWIEFGEELAQMDAPMVEQ------ALVGISNVLRHLVPMFVM 662
Query: 917 CNFSDL--APECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
C+ +D+ P+ PH R I LYDR+PGG G+S+ V
Sbjct: 663 CDRTDIHVVPQMKAPHSGR---PTIFLYDRYPGGIGLSEAV 700
>gi|449094717|ref|YP_007427208.1| putative ATP-dependent helicase [Bacillus subtilis XF-1]
gi|449028632|gb|AGE63871.1| putative ATP-dependent helicase [Bacillus subtilis XF-1]
Length = 749
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 244/739 (33%), Positives = 402/739 (54%), Gaps = 60/739 (8%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+V+ +I R+A +P+++ + K+AL GI +LY+HQ + G+++V T T
Sbjct: 19 VVNWHEIEPREAKTRPMPESIDERIKAALSKRGIDELYTHQYSAFQYVQKGESIVTVTPT 78
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGD 339
+SGK+LCYNLPVL++++ D ++ ALY+FPTKALAQDQ L + I YDGD
Sbjct: 79 ASGKTLCYNLPVLQSIAQDETNRALYLFPTKALAQDQKSELNEIIDEMGIDIKSFTYDGD 138
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T+ R +R ++ITNPDMLH +ILP+H ++ + NL
Sbjct: 139 TSPAIRQKVRKAGHIVITNPDMLHSAILPHHTKWVSLFENL------------------- 179
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
+++VIDE H Y+G FG H A ++RRL R+C YGSDP F+ ++AT ANP+E +L
Sbjct: 180 KYIVIDELHTYRGVFGSHVANVIRRLKRIC-RFYGSDPVFICTSATIANPKELGEQLTG- 237
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
+ L+ ++G+P +K FV +NP ++NK N S +EV+ L
Sbjct: 238 KPMRLVDDNGAPSGRKHFVFYNP-----PIVNK----------PLNIRRSATAEVNELAK 282
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDF 579
E +++ ++ I F RSR E++LS+ +E++++ SI YR GY+ ++RR IER
Sbjct: 283 EFLKNKVQTIVFARSRVRVEIILSHIQELVKKEIG--TKSIRGYRGGYLPKERREIERGL 340
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFE 639
G + GV +TNALELG+D+G + V + G+PGS+AS WQQAGR+GRR SL + VA
Sbjct: 341 REGDILGVVSTNALELGVDIGQLQVCVMTGYPGSVASAWQQAGRAGRRHGESLIIMVANS 400
Query: 640 GPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSS 699
P+DQY +++PE F E I+ +N +L HL CAA E P DE+ FG+ S
Sbjct: 401 TPIDQYIVRHPEYFFNRSPESARINPENLIILVDHLKCAAYELPFRA--DEE-FGAMEVS 457
Query: 700 GITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVI---DMQSNEV 756
I YL + L + + + + E P+ IS+R+ E ++ D+ + +
Sbjct: 458 DILE-----YLQEEAVLHRNGERYHW-ASESFPASNISLRSASQENVVIVDQSDIANVRI 511
Query: 757 LEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVS 816
+ E++ A +++ A+Y+H+G Y V++L+ K A +K D++Y YTD +++
Sbjct: 512 IGEMDRFSAMTLLHDEAIYLHEGVQYQVEKLDWDHKKAYVRKVDVEY------YTDANLA 565
Query: 817 GGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQ 876
T +K++ ++T+ TV F ++ + + ++LP+ +
Sbjct: 566 VQLKVLETDKTKEK-SRTSLHYGDVTVNALPTIFKKIKMTTFENIGSGPIHLPEEELHTS 624
Query: 877 AVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFP 936
A W+++ + + + E+ + L S+ L H+VP+Y+ C+ +D+ P
Sbjct: 625 AAWLEIKTADEDIGEK--TLEQLLLGISNVLQHIVPVYIMCDRNDVHVVSQIKAAHTGLP 682
Query: 937 ERILLYDRHPGGTGVSKQV 955
I LYD +PGG G++++V
Sbjct: 683 -TIFLYDHYPGGIGLAEEV 700
>gi|296333040|ref|ZP_06875497.1| putative ATP-dependent helicase [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305674856|ref|YP_003866528.1| ATP-dependent helicase [Bacillus subtilis subsp. spizizenii str.
W23]
gi|296149891|gb|EFG90783.1| putative ATP-dependent helicase [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305413100|gb|ADM38219.1| putative ATP-dependent helicase [Bacillus subtilis subsp.
spizizenii str. W23]
Length = 749
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 244/739 (33%), Positives = 403/739 (54%), Gaps = 60/739 (8%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+V+ +I R+A +P+++ + K+AL GI +LY+HQ + L G+++V T T
Sbjct: 19 VVNWHEIEPREARTRPMPESIDERIKAALSKRGIDELYTHQFSAFQYVLKGESIVTVTPT 78
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGD 339
+SGK+LCYNLPVL++++ D ++ ALY+FPTKALAQDQ L + I YDGD
Sbjct: 79 ASGKTLCYNLPVLQSIAQDETNRALYLFPTKALAQDQKSELNEIIDEMGIDIKSFTYDGD 138
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T+ R +R ++ITNPDMLH +ILP+H ++ + NL
Sbjct: 139 TSPAIRQKVRKAGHIVITNPDMLHSAILPHHTKWVSLFENL------------------- 179
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
+++VIDE H Y+G FG H A ++RRL R+C YGSDP F+ ++AT ANP+E +L
Sbjct: 180 KYIVIDELHTYRGVFGSHVANVIRRLKRIC-RFYGSDPVFICTSATIANPKELGEQLTG- 237
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
+ L++++G+P +K FV +NP ++NK N S +EV+ L
Sbjct: 238 KPMRLVEDNGAPSGRKHFVFYNP-----PIVNK----------PLNIRKSATAEVNELAK 282
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDF 579
E +++ ++ I F RSR E++LS+ +E++++ SI YR GY+ ++RR IER
Sbjct: 283 EFLKNKVQTIVFARSRVRVEIILSHIQELVKKEIG--TKSIRGYRGGYLPKERREIERGL 340
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFE 639
G++ GV +TNALELG+D+G + V + G+PGS+AS WQQAGR+GRR SL + VA
Sbjct: 341 REGEILGVVSTNALELGVDIGQLQVCVMTGYPGSVASAWQQAGRAGRRHGESLIIMVANS 400
Query: 640 GPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSS 699
P+DQY +++PE F E I+ +N +L HL CAA E P DE+ FG S
Sbjct: 401 TPIDQYIVRHPEYFFNRSPESARINPENLIILVDHLKCAAYELPFRA--DEE-FGPMDVS 457
Query: 700 GITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVI---DMQSNEV 756
I YL + L + + + + E P+ IS+R+ E ++ D+ + +
Sbjct: 458 DILE-----YLQEEAVLHRNGERYHW-ASESFPASNISLRSASQENVVIVDQSDIANVRI 511
Query: 757 LEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVS 816
+ E++ A +++ A+Y+H+G Y V++L+ K A +K D++Y YTD +++
Sbjct: 512 IGEMDRFSAMTLLHDEAIYLHEGVQYQVEKLDWDHKKAYVRKVDVEY------YTDANLA 565
Query: 817 GGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQ 876
+K++ ++T+ TV F ++ + + ++LP+ +
Sbjct: 566 VQLKVLEIDKTKEK-SRTSLHYGDVTVNALPTIFKKIKMTTFENIGSGPIHLPEEELHTS 624
Query: 877 AVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFP 936
A W+++ + + + E+ + L S+ L H+VP+Y+ C+ +D+ P
Sbjct: 625 AAWLEIKTADEDIGEK--TLEQLLLGISNVLQHIVPVYIMCDRNDVHVISQIKAAHTGLP 682
Query: 937 ERILLYDRHPGGTGVSKQV 955
I LYD +PGG G++++V
Sbjct: 683 -TIFLYDHYPGGIGLAEEV 700
>gi|359419437|ref|ZP_09211393.1| putative ATP-dependent helicase [Gordonia araii NBRC 100433]
gi|358244632|dbj|GAB09462.1| putative ATP-dependent helicase [Gordonia araii NBRC 100433]
Length = 771
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 259/748 (34%), Positives = 383/748 (51%), Gaps = 65/748 (8%)
Query: 216 SQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVV 275
++ + H E I + AV + P +A G+ + + HQ E+ + AG++VV+
Sbjct: 20 AETPVTHSEVIPSASAVHAQWPQWADPAIVAAYAELGLHRPWRHQIEAADHAFAGRHVVI 79
Query: 276 ATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL---LAMTKAFDASID 332
+T T+SGKSL Y LPVL+ L HD +++ALY+ PTKAL DQLR+L LA F + +
Sbjct: 80 STGTASGKSLAYQLPVLQTLLHDHATTALYLAPTKALGVDQLRSLTRILATNPEF-SRLA 138
Query: 333 IGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEV 392
YDGDT + R W R N+R+L TNPDMLH+ IL H ++ + L LR
Sbjct: 139 PSTYDGDTDPQMRQWARANSRILFTNPDMLHIGILSGHHRWQQFLRQLR----------- 187
Query: 393 YLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREH 452
F+V+DE H Y+G FG HTAL+LRRL R+ + G+DP V ++AT+A P
Sbjct: 188 --------FIVVDECHHYRGVFGAHTALVLRRLIRV-ARAAGADPVVVAASATTAEPART 238
Query: 453 CMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPIS 512
L L + +D SP ++ LW P L V + N A S +
Sbjct: 239 LSRLIGEPALA-VTHDASPTGERTVALWEP-GFLPEVTGE---------NGAPVRRSAGA 287
Query: 513 EVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDR 572
E L A+ V G R + F RSR+ E+ +L +AP L + YRAGY+A+DR
Sbjct: 288 EAGRLLADFVVEGARTLCFVRSRRGAEITARTAAGLLAASAPDLAGRVAAYRAGYLADDR 347
Query: 573 RRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSL 632
RR+ER G+L GVA TNALELG+D+ +D + G+PG++AS WQQAGR+GRR S
Sbjct: 348 RRLERAIADGELLGVATTNALELGVDISGLDAVIIAGYPGTVASFWQQAGRAGRRGAASA 407
Query: 633 AVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKY 692
V +A + PLD Y + +PE L + P+E D N VL+ HL+CAA E PL E+
Sbjct: 408 VVLIARDEPLDTYLVHHPEALLRKPVEATVFDPTNPYVLKPHLLCAAAELPLKPAEVERL 467
Query: 693 FGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQ 752
G+ + L G L K Y+ P I IR + ++D
Sbjct: 468 ---GVGEAVAELTEEGLLRRR-------KAGWYLAAGVEPHADIDIRGGIGGQILIVDTS 517
Query: 753 SNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTD 812
++++L ++ +A V+ GAV++HQG +Y+V EL L +AL + + T R+ T+
Sbjct: 518 TSQLLGTVDTVRALSTVHPGAVHIHQGASYVVDELGLDDGLALAHPEEPDWTTSPRETTE 577
Query: 813 IHVSGGNNAYATKISKDQLTKTTAQALA-----CTVTTTWFGFYRLWRGSGIIFDTVELY 867
+ V D L + + AL TVT+ G+ R SG I D EL
Sbjct: 578 VEVV------------DTLRRISHGALQVALVDVTVTSQVVGYLRKLH-SGEILDAKELD 624
Query: 868 LPKYSYESQAV-WIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPEC 926
LP + ++AV + P+++ V + + LHAA HA++ ++P+ C+ D+
Sbjct: 625 LPPQTLPTRAVQYTLTPEALAGVRVTDANLPGALHAAEHAMIGLLPLVATCDRWDIGGLS 684
Query: 927 PNPHDSRYFPERILLYDRHPGGTGVSKQ 954
N H P + +YD +PGG G + +
Sbjct: 685 TNLHADTGLPT-VYVYDGYPGGAGFADR 711
>gi|404213061|ref|YP_006667236.1| DEAD/DEAH box helicase domain protein [Gordonia sp. KTR9]
gi|403643860|gb|AFR47100.1| DEAD/DEAH box helicase domain protein [Gordonia sp. KTR9]
Length = 775
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 251/741 (33%), Positives = 384/741 (51%), Gaps = 57/741 (7%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+ H+ I +R A + P+ + A GI K+++HQA + A+ G +V + T T
Sbjct: 25 LTHLSVIPSRSASFDDWPEWVPQALIDAYADNGIEKVWTHQARAADAAFHGNHVAICTGT 84
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRA---LLAMTKAFDASIDIGVY 336
+SGKSL Y +P+L AL ++ +++ALY+ PTKAL DQ+RA ++A F + Y
Sbjct: 85 ASGKSLSYQMPILTALLNEKNATALYLAPTKALGADQIRAVSSIIAGRPEF-GHLQPCAY 143
Query: 337 DGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIF 396
DGDT + R W R ++R + TNPDMLH+ IL +H ++ + F
Sbjct: 144 DGDTDPEIRQWARAHSRWIFTNPDMLHIGILSHHHRWRQF-------------------F 184
Query: 397 LFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMEL 456
+RF+V+DE H Y+G FG HTAL++RRL R+ + G+DP + ++AT A P E L
Sbjct: 185 RHLRFIVVDECHHYRGVFGSHTALVMRRLLRI-ARAAGADPIVIGASATVAEPAEALGRL 243
Query: 457 ANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSY 516
+ + + DGSP ++ LW P L V + N A S +E +
Sbjct: 244 IGEPAVAVTE-DGSPRGERTVALWEP-DFLPVVTGE---------NGAPVRRSAGAESAR 292
Query: 517 LFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIE 576
L A+ V G R + F RSR+ EL R +L ++AP L I YRAGY+A+DRRR+E
Sbjct: 293 LLADFVVEGARTLCFARSRRGVELTALSARHLLSQSAPELESRIGAYRAGYLADDRRRLE 352
Query: 577 RDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERP--SLAV 634
+ G+L GVA TNALELG+D+ +D + G+PG++AS WQQAGR+GR+ SL V
Sbjct: 353 KAISDGELLGVATTNALELGVDISGLDAVIVSGYPGTVASFWQQAGRAGRQRESGDSLVV 412
Query: 635 YVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFG 694
VA + PLD Y + +PE L P+E D N +L HL+CAA+E PLS D++
Sbjct: 413 LVARDDPLDTYLVHHPESLLGKPVEATVTDPANPYILGPHLLCAAMEKPLS---DKEIDA 469
Query: 695 SGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN 754
L + G L K Y+ P + IR + ++D ++
Sbjct: 470 WNARDVAHDLASEGLL-------RKRKSGWYVTAGTEPHADVDIRGGIGGQVLIVDTTTS 522
Query: 755 EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIH 814
++L ++ +A V+ GAV++HQG TYLV EL+L +AL D + T R+ TDI
Sbjct: 523 QLLGTVDTGRAMSTVHPGAVHIHQGETYLVDELDLDDGLALAHPEDPDWTTSARETTDIT 582
Query: 815 VSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYE 874
++ AT S+ + T + VT G+ R R +G + D VEL +P+ +
Sbjct: 583 IT------ATLASR-RFGPLTVAFVEVDVTHQVVGYLRTLR-TGEVLDAVELDMPEQTLN 634
Query: 875 SQAV-WIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSR 933
++AV + P+S+ LHAA HA + ++P+ C+ D+ + H
Sbjct: 635 TRAVMYTLTPESLADAGIDETRLPGSLHAAEHAAIGLLPLVATCDRWDIGGLSTDLHPDT 694
Query: 934 YFPERILLYDRHPGGTGVSKQ 954
P + +YD + GG G +++
Sbjct: 695 GLPT-VFVYDGYMGGAGFAER 714
>gi|384175829|ref|YP_005557214.1| dead/deah box helicase domain protein [Bacillus subtilis subsp.
subtilis str. RO-NN-1]
gi|349595053|gb|AEP91240.1| dead/deah box helicase domain protein [Bacillus subtilis subsp.
subtilis str. RO-NN-1]
Length = 749
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 246/740 (33%), Positives = 401/740 (54%), Gaps = 62/740 (8%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+V+ +I R+A +P+++ + K+AL GI +LY+HQ + G+++V T T
Sbjct: 19 VVNWHEIEPREAKTRPMPESIDERIKAALSKRGIDELYTHQYSAFQYVQKGESIVTVTPT 78
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGD 339
+SGK+LCYNLPVL++++ D ++ ALY+FPTKALAQDQ L + I YDGD
Sbjct: 79 ASGKTLCYNLPVLQSIAQDETNRALYLFPTKALAQDQKSELNEIIDEMGIDIKSFTYDGD 138
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T+ R +R ++ITNPDMLH +ILP+H ++ + NL
Sbjct: 139 TSPAIRQKVRKAGHIVITNPDMLHSAILPHHTKWVSLFENL------------------- 179
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
+F+VIDE H Y+G FG H A ++RRL R+C YGSDP F+ ++AT ANP+E +L
Sbjct: 180 KFIVIDELHTYRGVFGSHVANVIRRLKRIC-RFYGSDPVFICTSATIANPKELGEQLTG- 237
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
+ L+ ++G+P +K FV +NP ++NK N S +EV+ L
Sbjct: 238 KPMRLVDDNGAPSGRKHFVFYNP-----PIVNK----------PLNIRRSATAEVNELAK 282
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREIL-EETAPHLVDSICVYRAGYVAEDRRRIERD 578
E +++ ++ I F RSR E++LS+ +E++ +E P SI YR GY+ ++RR IER
Sbjct: 283 EFLKNKVQTIVFARSRVRVEIILSHIQELVKKEIGP---KSIRGYRGGYLPKERREIERG 339
Query: 579 FFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAF 638
G + GV +TNALELG+D+G + V + G+PGS+AS WQQAGR+GRR SL + VA
Sbjct: 340 LREGDILGVVSTNALELGVDIGQLQVCVMTGYPGSVASAWQQAGRAGRRHGESLIIMVAN 399
Query: 639 EGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLS 698
P+DQY +++PE F E I+ +N +L HL CAA E P DE+ FG
Sbjct: 400 STPIDQYIVRHPEYFFNRSPESARINPENLIILVDHLKCAAYELPFRA--DEE-FGPMEV 456
Query: 699 SGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVI---DMQSNE 755
S I YL + L + + + + E P+ IS+R+ E ++ D+ +
Sbjct: 457 SDILE-----YLEEEAVLHRNGERYHW-ASESFPASNISLRSASQENVVIVDQSDIANVR 510
Query: 756 VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHV 815
++ E++ A +++ A+Y+H+G Y V++L+ K A +K D++Y YTD ++
Sbjct: 511 IIGEMDRFSAMTLLHDEAIYLHEGVQYQVEKLDWDHKKAYVRKVDVEY------YTDANL 564
Query: 816 SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYES 875
+ +K++ ++T+ TV F ++ + + ++LP+ +
Sbjct: 565 AVQLKVLEIDKTKEK-SRTSLHYGDVTVNALPTIFKKIKMTTFENIGSGPIHLPEEELHT 623
Query: 876 QAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYF 935
A W+++ + + + E+ + L S+ L H+VP+Y+ C+ +D+
Sbjct: 624 SAAWLEIKTADEDIGEK--TLEQLLLGISNVLQHIVPVYIMCDRNDVHVVSQIKAAHTGL 681
Query: 936 PERILLYDRHPGGTGVSKQV 955
P I LYD +PGG G++++V
Sbjct: 682 P-TIFLYDHYPGGIGLAEEV 700
>gi|337289884|ref|YP_004628905.1| hypothetical protein CULC22_00268 [Corynebacterium ulcerans
BR-AD22]
gi|334698190|gb|AEG82986.1| hypothetical protein CULC22_00268 [Corynebacterium ulcerans
BR-AD22]
Length = 785
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 262/741 (35%), Positives = 372/741 (50%), Gaps = 57/741 (7%)
Query: 221 VHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTS 280
H+E A+ A E P+ + K AL + GI +LYSHQ E + + V+AT TS
Sbjct: 30 THLETAPAKPARYAEWPEWVYPPIKEALVNRGIQRLYSHQQEVAHNAWEKIDTVIATGTS 89
Query: 281 SGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDA-------SIDI 333
SGKSL Y LP+L L++D ++ A+Y+ PTKAL DQL A+ + + A S+
Sbjct: 90 SGKSLGYQLPILSCLAYDSTACAIYLTPTKALGSDQLNAVTQLVREAQAMGGDTLRSVHP 149
Query: 334 GVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVY 393
YDGDT R +R+ +R + TNPDMLH ILP H ++ R+
Sbjct: 150 APYDGDTPSDARSGIREQSRFIFTNPDMLHAGILPNHQRWVRL----------------- 192
Query: 394 LIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHC 453
F +RF+VIDE H+Y+G FG +L+LRRL R+ + YGS P+ + ++ATS NP EH
Sbjct: 193 --FRHLRFIVIDECHSYRGVFGAGVSLVLRRLLRIAAR-YGSTPTVILASATSNNPAEHA 249
Query: 454 MELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISE 513
EL + + D +P + +LW P L V + + R AA+ SE
Sbjct: 250 -ELLLGRPVHAVTTDSAPTGARTVMLWEP-GFLDGVEGEHGAPV---RRAAS------SE 298
Query: 514 VSYLFAEMVQHGLRCIAFCRSRKLCELV-LSYTREILEETAPHLVDSICVYRAGYVAEDR 572
+ + A ++ G R + F RSR+ EL L T E+ P L I YRAGY+AEDR
Sbjct: 299 AASIMATLIAEGARTLTFVRSRRQAELTALRCTEELSYHGRPDLARRISAYRAGYLAEDR 358
Query: 573 RRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSL 632
R+IE G+L GVA+TNALELGIDVG +D + GFPG++AS WQQAGR+GRR + SL
Sbjct: 359 RKIEEQLDNGELLGVASTNALELGIDVGGLDAVVTAGFPGTVASFWQQAGRAGRRGQGSL 418
Query: 633 AVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKY 692
VA + P+D Y + +PE L PIE + N +L HL CAA E PLS D +
Sbjct: 419 VTLVARDEPMDTYLVHHPEALLGRPIERTVFNPHNPHILAGHLCCAASEAPLS---DAEI 475
Query: 693 FGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHT-ISIRAIESERYEVIDM 751
G L+ G L F + P+H +S+R S ++D
Sbjct: 476 NALGAQQVAEQLEREGLLRH-----RRHGWFAVEKPGEPPAHELVSLRGSGSA-ITIVDE 529
Query: 752 QSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYT 811
VL IE+++A QV+ GAVY+H+G T+++ L+L ++AL Y T R T
Sbjct: 530 TDGRVLGTIEQTRAVSQVHPGAVYLHRGETFVINSLDLDQRLALASPDAPDYSTYARSTT 589
Query: 812 DIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKY 871
DI + G + A ++ L VT G Y + G + D V L LP
Sbjct: 590 DIRILGEVDKVANPAPGLWVSN-----LDVEVTDRVTG-YVVKAPDGSVLDMVPLQLPPQ 643
Query: 872 SYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHD 931
+ ++AV + V + LHAA HA + ++P+ C+ D+ H
Sbjct: 644 TLVTRAVAYTIDPLVLTQLGIT-DIPGALHAAEHAAIGILPLIATCDRWDIGGVSTELHP 702
Query: 932 SRYFPERILLYDRHPGGTGVS 952
P + +YD HPGG G +
Sbjct: 703 DTGLPT-VFVYDGHPGGAGFA 722
>gi|443634835|ref|ZP_21119007.1| dead/deah box helicase domain-containing protein [Bacillus subtilis
subsp. inaquosorum KCTC 13429]
gi|443345260|gb|ELS59325.1| dead/deah box helicase domain-containing protein [Bacillus subtilis
subsp. inaquosorum KCTC 13429]
Length = 749
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 245/739 (33%), Positives = 394/739 (53%), Gaps = 60/739 (8%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+V+ +I R+A +P+++ + K+AL + GI +LY+HQ + G+++V T T
Sbjct: 19 VVNWHEIEPREARTRPMPESIDERIKTALSNRGIDELYTHQYSAFQCVQKGESIVTVTPT 78
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGD 339
+SGK+LCYNLPVL++++ D ++ ALY+FPTKALAQDQ L + I YDGD
Sbjct: 79 ASGKTLCYNLPVLQSIAQDETNRALYLFPTKALAQDQKSELNEIIDEMGIDIKSFTYDGD 138
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T+ R +R ++ITNPDMLH +ILP+H ++ + NL
Sbjct: 139 TSPAIRQKVRKAGHIVITNPDMLHSAILPHHTKWVSLFENL------------------- 179
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
+++VIDE H Y+G FG H A ++RRL R+C YGSDP F+ ++AT ANP+E +L
Sbjct: 180 KYIVIDELHTYRGVFGSHVANVIRRLKRIC-RFYGSDPIFICTSATIANPKELGEQLTG- 237
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
+ L+ ++G+P +K FV +NP ++NK N S +EV+ L
Sbjct: 238 KPMRLVDDNGAPSGRKHFVFYNP-----PIVNK----------PLNIRKSATAEVNELAK 282
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDF 579
E +++ ++ I F RSR E++LS+ +E++++ SI YR GY+ ++RR IER
Sbjct: 283 EFLKNKVQTIVFARSRVRVEIILSHIQELVKKEIG--TKSIRGYRGGYLPKERREIERGL 340
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFE 639
G++ GV +TNALELG+D+G + V + G+PGS+AS WQQAGR+GRR SL + VA
Sbjct: 341 REGEILGVVSTNALELGVDIGQLQVCVMTGYPGSVASAWQQAGRAGRRHGESLIIMVANS 400
Query: 640 GPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSS 699
P+DQY +++PE F E I+ +N +L HL CAA E P DE+ FG S
Sbjct: 401 TPIDQYIVRHPEYFFNRSPESARINPENLIILVDHLKCAAYELPFRA--DEE-FGPMDVS 457
Query: 700 GITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVI---DMQSNEV 756
I YL + L + + + + E P+ IS+R+ E ++ D+ + +
Sbjct: 458 DILE-----YLQEEAVLHRNGERYHW-ASESFPASNISLRSASQENVVIVDQSDIANVRI 511
Query: 757 LEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVS 816
+ E++ A +++ A+Y+H+G Y V++L+ K A +K D++Y+T + V
Sbjct: 512 IGEMDRFSAMTLLHDEAIYLHEGVQYQVEKLDWDHKKAYVRKVDVEYYTDANLAVQLKVL 571
Query: 817 GGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQ 876
+ + T AL + GSG I YLP+ +
Sbjct: 572 EVDKTTENSRTSLHYGDVTVNALPTIFKKIKMTTFENI-GSGPI------YLPEEELHTS 624
Query: 877 AVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFP 936
A W+++ + + + E+ + L S+ L H+VP+Y+ C+ +D+ P
Sbjct: 625 AAWLEIKTADEDIGEK--TLEQLLLGISNVLQHIVPVYIMCDRNDVHVVSQIKAAHTGLP 682
Query: 937 ERILLYDRHPGGTGVSKQV 955
I LYD +PGG G++++V
Sbjct: 683 -TIFLYDHYPGGIGLAEEV 700
>gi|118468463|ref|YP_890380.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium smegmatis str. MC2 155]
gi|399990379|ref|YP_006570729.1| DEAD/DEAH box helicase [Mycobacterium smegmatis str. MC2 155]
gi|441216539|ref|ZP_20977059.1| putative helicase [Mycobacterium smegmatis MKD8]
gi|118169750|gb|ABK70646.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium smegmatis str. MC2 155]
gi|399234941|gb|AFP42434.1| DEAD/DEAH box helicase [Mycobacterium smegmatis str. MC2 155]
gi|440624363|gb|ELQ86226.1| putative helicase [Mycobacterium smegmatis MKD8]
Length = 776
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 258/747 (34%), Positives = 386/747 (51%), Gaps = 58/747 (7%)
Query: 215 GSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVV 274
G + HV D++ R V P + AL GI+ +SHQ + + G++VV
Sbjct: 22 GDDNPLRHVADLAPRTGKPVPWPAWAHPDVVRALHDHGITAPWSHQLSAAQLAHDGRHVV 81
Query: 275 VATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIG 334
++T T+SGKSL Y LP+L AL+ D + LY+ PTKAL DQLRA A+T++ A D+
Sbjct: 82 ISTGTASGKSLAYQLPILSALADDPRARVLYLSPTKALGHDQLRAAHALTESVAALRDVA 141
Query: 335 V--YDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEV 392
YDGD+ + R + R+ +R + +NPDM+H+S+L H +++ L NLR
Sbjct: 142 PAPYDGDSATEVRRFARERSRWIFSNPDMIHLSLLRNHSRWAVFLRNLR----------- 190
Query: 393 YLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSH--VYGSDPSFVFSTATSANPR 450
++V+DE H Y+G FG + A++LRRL RLC G+ P+ +F++AT+++P
Sbjct: 191 --------YIVVDECHYYRGIFGSNVAMVLRRLLRLCERYSANGATPTVIFASATTSSPA 242
Query: 451 EHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSP 510
E EL + +E+ + DGSP + LW P + L + + N A S
Sbjct: 243 ETAAELIGQTVVEVTE-DGSPQGARTIALWEP-ALLPDLAGE---------NGAPVRRSA 291
Query: 511 ISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAE 570
SE + A++V G R + F RSR+ EL R L ETAP LV+ + YRAGY+AE
Sbjct: 292 GSEAGRVMADLVAEGARTLTFVRSRRGAELTALGARARLSETAPDLVEQVASYRAGYLAE 351
Query: 571 DRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERP 630
DRR +E G+L G+A TNALELGID+ +D + GFPG++AS WQQAGRSGRR +
Sbjct: 352 DRRELEHALSDGRLRGLATTNALELGIDIAGLDAVVMAGFPGTVASFWQQAGRSGRRGQG 411
Query: 631 SLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDE 690
+L V +A + PLD Y + +P L PIE ID N VL L+CAA E PL+
Sbjct: 412 ALVVLIARDDPLDTYLVHHPAALLDKPIERVVIDPTNPHVLGPQLLCAAAELPLTEAEVR 471
Query: 691 KYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVID 750
++ ++ L + G L P A F G + P+ + IR + +++
Sbjct: 472 RWDAEAVAQ---RLVDDGLLRKRP-----AGYFPAPGVDPHPA--VDIRGSTGGQIAILE 521
Query: 751 MQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDY 810
+ +L +A V+ GAVY+HQG +Y+V L+ IA D Y T R+
Sbjct: 522 ADTGRMLGSAGAGQAASSVHPGAVYLHQGESYVVDSLDFEDGIAFVHAEDPGYTTFAREI 581
Query: 811 TDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPK 870
TDI V+G + T + +VT T G+ R R G + D VEL +P
Sbjct: 582 TDISVTGPGE-------RVDHGPVTIGLVPVSVTNTVVGYLRR-RMDGEVIDFVELDMPP 633
Query: 871 YSYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLA--PECP 927
+ ++ AV + P++++ + S LHAA HA + ++P+ C+ D+
Sbjct: 634 RTLDTMAVMCTITPEALQDNGIEQLSVPGALHAAEHASIGLLPLVASCDRGDIGGVSTAV 693
Query: 928 NPHDSRYFPERILLYDRHPGGTGVSKQ 954
P D P I +YD +PGG G + +
Sbjct: 694 GPVDG--LPS-IFVYDGYPGGAGFADR 717
>gi|138895050|ref|YP_001125503.1| ATP-dependent RNA helicase [Geobacillus thermodenitrificans NG80-2]
gi|134266563|gb|ABO66758.1| ATP-dependent RNA helicase [Geobacillus thermodenitrificans NG80-2]
Length = 770
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 261/769 (33%), Positives = 397/769 (51%), Gaps = 75/769 (9%)
Query: 195 CSDKSQLLPLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGIS 254
C+ K Q L E +E LR+ +V+ +I ++A V P + ++AL++ GI+
Sbjct: 3 CNVKKQTLS-EWIEQLRQ----DPNVVYWHEIEPKEADTVPFPAEIDARLRAALEARGIA 57
Query: 255 KLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQ 314
LY+HQA + A +G+NVV T T+SGK+LCYNLPVL+A++ S ALY+FPTKALAQ
Sbjct: 58 SLYTHQAAAYEAVQSGRNVVAVTPTASGKTLCYNLPVLQAIAKAPESRALYLFPTKALAQ 117
Query: 315 DQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFS 374
DQ L + D I YDGDT R +R ++ITNPDMLH +ILP+H ++
Sbjct: 118 DQKNELNEIIAEMDVPIYSYTYDGDTAPALRQKIRQAGHIVITNPDMLHTAILPHHTKWI 177
Query: 375 RILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYG 434
+ L R+VVIDE H Y+G FG H A ++RRL R+C+ YG
Sbjct: 178 SLFEQL-------------------RYVVIDELHTYRGVFGSHVANVIRRLKRICA-FYG 217
Query: 435 SDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQ 494
S P+F+ ++AT ANP+E L + LI N+G+P +K V +NP R++
Sbjct: 218 SQPTFICTSATIANPQELAERLTG-EPMTLIDNNGAPRGRKHIVFYNPPVVERTM----- 271
Query: 495 TDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAP 554
+ R +A KT+ ++ +++ + + I F RSR EL+LS+ + ++E
Sbjct: 272 ----NVRQSATKTAVELAR------QLLVNRIPTIVFARSRVRTELILSHLQAAVKERIG 321
Query: 555 HLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSI 614
+I YR GY+ +RR IE G + GV +TNALELG+D+G + + G+PG+I
Sbjct: 322 E--TTIRGYRGGYLPNERRAIENGLRNGDIIGVVSTNALELGVDIGQLQACILTGYPGTI 379
Query: 615 ASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQH 674
AS WQQAGR+GRR SL + VA PLDQY + +PE F E I+ N +L H
Sbjct: 380 ASTWQQAGRAGRRHGDSLVIMVASSSPLDQYIVSHPEYFFARSPETARINPDNMLILVDH 439
Query: 675 LVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSH 734
L CAA E P E + G + + L ++G L A + ++ + P+
Sbjct: 440 LKCAAYELPFR--RGETFGGIDVEDVLDFLVDQGVLH------ERAGRWHWMS-DAFPAQ 490
Query: 735 TISIRAIESERYEVIDMQS---NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSS 791
IS+R+ E +ID+ + + V+ E++ A ++E A+Y+H+G Y V++L+
Sbjct: 491 NISLRSAAQENVVIIDISNIARHRVIGEMDRFSAMTLLHEEAIYLHEGTQYQVEKLDWEE 550
Query: 792 KIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFY 851
K A ++ D++YFT + V + + + +A+A +
Sbjct: 551 KKAYVRQVDVEYFTDANLAVQLDVLSNDRSEERGAMAVHYGDVSVRAMATIFKKLKLSTF 610
Query: 852 RLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFS---FRSGLHAASHALL 908
GSG I LP+ + + A W + + V FS F L ++ L
Sbjct: 611 ENI-GSGPI------RLPEETLHTSAAWFEWKE-----VPSEFSPALFEHLLVGLANVLS 658
Query: 909 HVVPIYVRCNFSD--LAPECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
H+VPI+V C+ SD + P+ PH R I LYDR+PGG G+S+ V
Sbjct: 659 HLVPIFVMCDRSDVHVVPQLKAPHSGR---PTIFLYDRYPGGVGLSEAV 704
>gi|453379960|dbj|GAC85329.1| putative ATP-dependent helicase [Gordonia paraffinivorans NBRC
108238]
Length = 775
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 240/747 (32%), Positives = 385/747 (51%), Gaps = 69/747 (9%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+ H+ I +R+ + P+ + + + A GI ++++HQA++ A+ G++V + T T
Sbjct: 25 LTHLSVIPSRREAFADWPEWVPEPLREAYADNGIERVWTHQAQAADAAFTGRHVAICTGT 84
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFD--ASIDIGVYD 337
+SGKSL Y +P+L L + +++ALY+ PTKAL DQ+R++ A+ + YD
Sbjct: 85 ASGKSLAYQMPILSTLLTEKNATALYLAPTKALGADQIRSVTAVISGRPEFGHLQPCAYD 144
Query: 338 GDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFL 397
GDT + R W R ++R + TNPDMLH+ IL +H ++ + NLR
Sbjct: 145 GDTDPEIRQWARVHSRWIFTNPDMLHIGILSHHAKWRQFFRNLR---------------- 188
Query: 398 FIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELA 457
++V+DE H Y+G FG HTAL++RRL R+ + G +P+ + ++AT A P E L
Sbjct: 189 ---YIVVDECHHYRGVFGSHTALVMRRLLRI-ARAAGGNPTVIGASATVAAPAEALSRLI 244
Query: 458 NLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYL 517
+ + + D SP ++ LW P L +V + N A S +E + L
Sbjct: 245 GEPAVAVTE-DASPRGERTVALWEP-DFLPAVTGE---------NGAPVRRSAGAEAARL 293
Query: 518 FAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIER 577
A+ V G R + F RSR+ EL R +L ++AP LV + YRAGY+A+DRR++E+
Sbjct: 294 LADFVVEGARTLCFARSRRGVELTALTARNLLADSAPELVSRVAAYRAGYLADDRRKLEQ 353
Query: 578 DFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERP--SLAVY 635
G+L GVA TNALELG+D+ +D + G+PG++AS WQQAGR+GR+ SL V
Sbjct: 354 AINDGELIGVATTNALELGVDISGLDAVIVSGYPGTVASFWQQAGRAGRQRESGDSLVVL 413
Query: 636 VAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLI----YDEK 691
VA + PLD Y + +P L P+E D N +L HL+CAA E PLS +D +
Sbjct: 414 VARDDPLDTYLVHHPSALLDKPVEATVTDPSNPYILGPHLLCAAAEKPLSDAEIDSWDAR 473
Query: 692 YFGSGLSS-GITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVID 750
L++ G+ + G+ Y+ P + IR + ++D
Sbjct: 474 DVAEDLAAEGLLRKRKAGW---------------YVAAGVEPHAEVDIRGGIGGQVLIVD 518
Query: 751 MQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDY 810
+++VL ++ +A V+ GAV++HQG TYLV EL+L +AL D + T R+
Sbjct: 519 TTTSQVLGTVDTGRAMSTVHPGAVHIHQGETYLVDELDLDDGLALAHPEDPDWTTSARET 578
Query: 811 TDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPK 870
TDI ++ + I T + VT G+ R R SG + D VEL +P
Sbjct: 579 TDISIT-------SVIDSRTFGALTVAFVDVDVTHQVVGYLRTLR-SGEVLDAVELDMPA 630
Query: 871 YSYESQAVWIQVPQSVKAVVEQNFS---FRSGLHAASHALLHVVPIYVRCNFSDLAPECP 927
+ ++AV + +++A+ + LHAA HA + ++P+ C+ D+
Sbjct: 631 QTLHTRAVMYTL--TLEALADAGIDEPRLPGSLHAAEHAAIGLLPLVATCDRWDIGGVST 688
Query: 928 NPHDSRYFPERILLYDRHPGGTGVSKQ 954
+ H P + +YD + GG G +++
Sbjct: 689 DLHPDTGLPT-VFVYDGYMGGAGFAER 714
>gi|365984945|ref|XP_003669305.1| hypothetical protein NDAI_0C04020 [Naumovozyma dairenensis CBS 421]
gi|343768073|emb|CCD24062.1| hypothetical protein NDAI_0C04020 [Naumovozyma dairenensis CBS 421]
Length = 1063
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 257/775 (33%), Positives = 395/775 (50%), Gaps = 84/775 (10%)
Query: 206 MVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIM 265
M++ L K Q+ I R A E+ L N S L+ + YSHQA +I
Sbjct: 242 MIKKLMKLDWYTDQIKEHYTIPERSAAYGELDFELSPNIYSILEH---ERFYSHQAHAIN 298
Query: 266 ASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTK 325
A AG+NV++ T TSSGKSL Y L ++ L D ++ +Y+FPTKALAQDQ RA +
Sbjct: 299 AIHAGQNVIITTSTSSGKSLIYQLSAIDILLKDPEATCMYIFPTKALAQDQKRAFEDLIS 358
Query: 326 AFDA--SIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLI 383
+ + YDGDT Q +R +R NAR++ TNPDM+H SILP H + L NL++
Sbjct: 359 KIPELREMRVDTYDGDTEQHERSVIRKNARVIFTNPDMIHASILPNHTNWRHFLYNLKI- 417
Query: 384 AFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDP-SFVFS 442
VV+DE H Y+G FG + AL++RRL RL Y + F+
Sbjct: 418 ------------------VVVDELHVYRGLFGSNVALVMRRLLRLSKCFYENKSIRFISC 459
Query: 443 TATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRN 502
+AT P +H + + ++L+ DGSP K V+WNP VL++ +
Sbjct: 460 SATLREPIQHMKNMFGIEDVKLVHEDGSPRGTKHLVVWNP-----PVLSQHE-------- 506
Query: 503 AANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETA-PHLVDSIC 561
K + I E + E++ +R IAFC R++CEL++ R IL + L+ +
Sbjct: 507 --RKRENFIRESAKNLVELILRNIRTIAFCFVRRVCELLMKEVRNILSDMGREDLLVDVM 564
Query: 562 VYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQA 621
YR GY A DRR+IER+ F G L V +TNALELGID+G +D L GFP S+A+ QQ+
Sbjct: 565 SYRGGYSASDRRKIEREMFHGNLKAVISTNALELGIDIGGLDAVLMCGFPLSMANFHQQS 624
Query: 622 GRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCH----IDAQNHKVLEQHLVC 677
GR+GRR + SL + VA + P+DQ+++ +P+ L + +D N VLE H+ C
Sbjct: 625 GRAGRRNQDSLTLVVASDSPVDQHYVAHPDILLHGDDPESYQDLVLDFDNLLVLEGHVQC 684
Query: 678 AALEHPLSLIYDEKYFGS----GLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPS 733
AA E P+ + D+ +F + GY +++ L P
Sbjct: 685 AAFELPIDIERDKVFFKEEHLIKICQERLQYNKEGYHANNRFL-------------PWPP 731
Query: 734 HTISIRAIESERYEVIDMQS--NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSS 791
+S+R +E ++Y VID+ + N V+EEIE S+ F +Y+G +++HQG+ YLVKE +
Sbjct: 732 KEVSLRGVEEDKYAVIDITNGRNIVIEEIEASRTSFTLYDGGIFIHQGYPYLVKEFDTDE 791
Query: 792 KIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTW--FG 849
+ AL Q+ D+ + T RD+TD+ + ++ + L + + TT FG
Sbjct: 792 RYALVQRVDVDWVTNQRDFTDV------DPQLIEMVR-SLDDSDVPVYYGKIRTTIIVFG 844
Query: 850 FYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVE-QNFSFRSGLHAASHALL 908
F+++ + II D VE + S+ +WI +P + E + + +HAA HA++
Sbjct: 845 FFKIDKYKRII-DAVETNNQPIVFYSKGLWIDIPAKALEICEAKQLNAPGAIHAAQHAIM 903
Query: 909 HVVPIYVRCNFSDLAPECPNP-------HDSRYFPERILLYDRHPG--GTGVSKQ 954
+ P ++ ++ EC P R P R++ YD G G+G+S +
Sbjct: 904 GLFPRFIVSGVDEIQTECKAPEKEFAERQTKRIRPARLIFYDSKGGEYGSGLSTK 958
>gi|379714508|ref|YP_005302845.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis 316]
gi|387137833|ref|YP_005693812.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis CIP
52.97]
gi|389849578|ref|YP_006351813.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis 258]
gi|349734311|gb|AEQ05789.1| DEAD-box ATP dependent DNA helicase [Corynebacterium
pseudotuberculosis CIP 52.97]
gi|377653214|gb|AFB71563.1| DEAD-box ATP dependent DNA helicase [Corynebacterium
pseudotuberculosis 316]
gi|388246884|gb|AFK15875.1| DEAD-box ATP dependent DNA helicase [Corynebacterium
pseudotuberculosis 258]
Length = 785
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 264/744 (35%), Positives = 376/744 (50%), Gaps = 63/744 (8%)
Query: 221 VHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTS 280
H+E A+ A + P+ + K AL S GI +LY+HQ E + + V+AT TS
Sbjct: 30 THLETTPAKPARYADWPEWVYPPVKEALISRGIQRLYAHQQEVAHNAWEKIDTVIATGTS 89
Query: 281 SGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAM-----TKAFDA--SIDI 333
SGKSL Y LP+L L++D ++ A+Y+ PTKAL DQL A+ A+ T DA S+
Sbjct: 90 SGKSLGYQLPILSCLAYDSTACAIYLTPTKALGSDQLNAVTALLQEAQTLGGDALDSVHP 149
Query: 334 GVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVY 393
YDGDT R +R+ +R + TNPDMLH ILP H +++R+
Sbjct: 150 APYDGDTPSDARSGIREQSRFIFTNPDMLHAGILPNHQRWARL----------------- 192
Query: 394 LIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHC 453
F +RF+VIDE H+Y+G FG +L+LRRL R+ S YGS P+ + ++ATS NP EH
Sbjct: 193 --FRHLRFIVIDECHSYRGVFGAGVSLVLRRLLRIASR-YGSTPTVILASATSNNPAEHA 249
Query: 454 MELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISE 513
EL + + D +P + +LW P L V + + R AA+ SE
Sbjct: 250 -ELLLGRPVYAVTTDSAPTGARTIMLWEP-GFLDGVEGEHGAPV---RRAAS------SE 298
Query: 514 VSYLFAEMVQHGLRCIAFCRSRKLCELV-LSYTREILEETAPHLVDSICVYRAGYVAEDR 572
+ + A ++ G R + F RSR+ EL L E+ P L I YRAGY+AEDR
Sbjct: 299 AASIMATLIAEGARTLTFVRSRRQAELTALRCAEELSYHGRPDLAPRISAYRAGYLAEDR 358
Query: 573 RRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSL 632
RRIE G+L GVA+TNALELGIDVG +D + GFPG++AS WQQAGR+GRR + SL
Sbjct: 359 RRIEEQLDNGQLLGVASTNALELGIDVGGLDAVVTAGFPGTVASFWQQAGRAGRRGQGSL 418
Query: 633 AVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKY 692
VA + P+D Y + +PE L PIE + N +L HL CAALE PLS D +
Sbjct: 419 VTLVARDEPMDTYLVHHPEALLGRPIERTVFNPHNPHILAGHLCCAALEAPLS---DAEI 475
Query: 693 FGSGLSSGITTLKNRGYLS-SDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDM 751
G L+ G L + K E HE ++S+R S ++D
Sbjct: 476 NSLGAQQVAERLEREGLLKHRRHGWFAVEKPGEPSAHE-----SVSLRGSGSA-ITIVDE 529
Query: 752 QSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYT 811
VL IE+++A QV+ GAVY+HQG ++++ L+L +AL + T R T
Sbjct: 530 TDGRVLGTIEQTRAVSQVHPGAVYLHQGESFIISSLDLEQHLALAHPDAPDHSTYARSTT 589
Query: 812 DIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKY 871
DI + G + A ++ L VT G Y + G + D V L +P
Sbjct: 590 DIRILGEVDKVANPAPGLWVSN-----LNVEVTDRVTG-YVVKAPDGSVLDVVPLQMPPQ 643
Query: 872 SYESQAVWIQVPQSVKAVVEQNFSFR---SGLHAASHALLHVVPIYVRCNFSDLAPECPN 928
+ ++A V ++ ++ LHAA HA + ++P+ C+ D+
Sbjct: 644 TLITRA----VAYTIDPLILDQLGITDVPGALHAAEHAAIGILPLIATCDRWDIGGVSTE 699
Query: 929 PHDSRYFPERILLYDRHPGGTGVS 952
H P + +YD HPGG G +
Sbjct: 700 MHPDTGLPT-VFVYDGHPGGAGFT 722
>gi|441523118|ref|ZP_21004751.1| putative helicase [Gordonia sihwensis NBRC 108236]
gi|441457253|dbj|GAC62712.1| putative helicase [Gordonia sihwensis NBRC 108236]
Length = 770
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 248/751 (33%), Positives = 380/751 (50%), Gaps = 70/751 (9%)
Query: 215 GSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVV 274
G+ G + H+ I R + PD + + A G+ + + HQ+E+ + G++V
Sbjct: 21 GTAG-LTHMSVIDPRGGEFTDWPDWVHPAVREAFVERGVQRPWRHQSEAASLAAGGRHVC 79
Query: 275 VATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRA---LLAMTKAFDASI 331
V T T+SGKSL Y LPVL + D S+ALY+ PTKAL DQLR+ L+A F A +
Sbjct: 80 VCTGTASGKSLAYQLPVLTTFADDPDSTALYLSPTKALGTDQLRSVAQLIAGRPEF-AHL 138
Query: 332 DIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTE 391
YDGDT + R W R ++R + TNPDML + I H ++ + LR
Sbjct: 139 QPCAYDGDTDSELRQWARQHSRWIFTNPDMLQIGITSTHPRWRPFFAKLR---------- 188
Query: 392 VYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPRE 451
++V+DE H Y+G FG HTAL+L+R R+ YG+DP + ++AT +NP +
Sbjct: 189 ---------YIVVDECHHYRGVFGSHTALVLQRALRIARK-YGADPVVIGASATVSNPAQ 238
Query: 452 HCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPI 511
L + + D SP ++ +W P L V + N A S
Sbjct: 239 ALSRLIGEDVVA-VTEDASPHGERTVAMWEP-GFLEEVTGE---------NEAPVRRSAG 287
Query: 512 SEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAED 571
SE + L A+ V G R + F RSR+ E+ R+IL E AP LVD + YRAGY+A+D
Sbjct: 288 SEAARLLADFVIEGARTLCFVRSRRGVEVTAVRARQILAEAAPELVDRVAAYRAGYLADD 347
Query: 572 RRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPS 631
RRR+ER G+L GVA TNALELG+D+ +D + G+PG++AS WQQAGR+GRR S
Sbjct: 348 RRRLERAISEGELLGVATTNALELGVDISGLDAVVVAGYPGTVASFWQQAGRAGRRGEGS 407
Query: 632 LAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLS-----L 686
+ V VA + PLD Y + +PE L + +E D N VL H++CAA E PL+
Sbjct: 408 IVVMVARDDPLDTYLVHHPEALLERAVEATVTDPTNPFVLGPHMLCAATEFPLTEAEVAA 467
Query: 687 IYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERY 746
E+ + G + G+ ++ P LD P I +R +
Sbjct: 468 FSAEQVVADLAAEGKLKRRKAGWYAA-PGLD--------------PHGDIDLRGGIGGQV 512
Query: 747 EVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTK 806
++D+ S+ +L ++ ++A VY GAVY+HQG +++V EL+L +AL + + T
Sbjct: 513 LIVDVTSSRLLGTVDTARAMTSVYPGAVYLHQGESFVVDELDLDDGLALSHPEEPDWTTS 572
Query: 807 TRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVEL 866
R+ +D+ + + + + T + VT+ GF R SG I D+V L
Sbjct: 573 AREVSDVSI-------LETVDRREFGPLTVALASVVVTSQVVGFLRK-SLSGEILDSVPL 624
Query: 867 YLPKYSYESQAVWIQVPQSVKAVVEQNFS---FRSGLHAASHALLHVVPIYVRCNFSDLA 923
LP++ E++AV + + +A+++ + F LHAA HA + ++ + C+ D+
Sbjct: 625 DLPEHRLETRAVMYTL--TPEAMIDAGIALDKFPGALHAAEHAAIGMLGLVATCDRWDIG 682
Query: 924 PECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
H P + +YD PGG G + +
Sbjct: 683 GLSTALHPGTGLPT-VFVYDGFPGGAGFADR 712
>gi|409388567|ref|ZP_11240537.1| putative ATP-dependent helicase [Gordonia rubripertincta NBRC
101908]
gi|403201342|dbj|GAB83771.1| putative ATP-dependent helicase [Gordonia rubripertincta NBRC
101908]
Length = 775
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 246/749 (32%), Positives = 383/749 (51%), Gaps = 67/749 (8%)
Query: 217 QGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVA 276
+ + H+ I +R A E PD + A GI ++++HQA + + G +V +
Sbjct: 22 ESPLTHLSVIPSRPASFAEWPDWVPRPLLDAYADNGIERVWTHQARAADEAFRGNHVAIC 81
Query: 277 TMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL---LAMTKAFDASIDI 333
T T+SGKSL Y +P+L AL ++ +S+ALY+ PTKAL DQ+RA+ +A F +
Sbjct: 82 TGTASGKSLSYQMPILSALLNEKNSTALYLAPTKALGADQIRAVSSVIAGRPEF-GHLQP 140
Query: 334 GVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVY 393
YDGDT + R W R ++R + TNPDMLH+ IL +H ++ +
Sbjct: 141 CAYDGDTDPEIRQWARVHSRWIFTNPDMLHIGILSHHARWRQF----------------- 183
Query: 394 LIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHC 453
F +RF+V+DE H Y+G FG HTAL++RRL R+ + G++P+ + ++AT A P E
Sbjct: 184 --FRHLRFIVVDECHHYRGVFGSHTALVMRRLLRI-ARAAGANPTVIGASATVAQPAEAL 240
Query: 454 MELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISE 513
L + + + D SP ++ LW P L +V + N A S +E
Sbjct: 241 SRLIGEPAVAVTE-DSSPRGERTVALWEP-DFLPAVTGE---------NGAPVRRSAGAE 289
Query: 514 VSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRR 573
+ L A+ V G R + F RSR+ EL R +L ++AP L + YRAGY+A+DRR
Sbjct: 290 SARLLADFVVEGARTLCFARSRRGVELTALSARNLLSQSAPELESRVGAYRAGYLADDRR 349
Query: 574 RIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERP--S 631
++E+ G+L GVA TNALELG+D+ +D + G+PG++AS WQQAGR+GR+ S
Sbjct: 350 KLEKAISDGELLGVATTNALELGVDISGLDAVIVSGYPGTVASFWQQAGRAGRQRESGDS 409
Query: 632 LAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLS----LI 687
L V VA + PLD Y + +PE L P+E D N +L HL+CAA E PLS
Sbjct: 410 LVVLVARDDPLDTYLVHHPESLLGKPVEATVTDPANPYILGPHLLCAAAEKPLSDAEIDA 469
Query: 688 YDEKYFGSGLSS-GITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERY 746
+D + L++ G+ + G+ Y+ P I IR +
Sbjct: 470 WDARPVAEDLAAEGLLRKRKSGW---------------YVAAGVEPHAEIDIRGGIGGQV 514
Query: 747 EVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTK 806
++D +++VL ++ +A V+ GAV++HQG TYLV EL+L +AL D + T
Sbjct: 515 LIVDTTTSQVLGTVDTGRAMSTVHPGAVHIHQGETYLVDELDLDDGLALAHPEDPDWTTS 574
Query: 807 TRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVEL 866
R+ TDI ++ + I + T + VT G+ R R +G + D VEL
Sbjct: 575 ARETTDISIT-------SIIESHEFGPLTVAFVEVDVTHQVVGYLRTLR-TGEVLDAVEL 626
Query: 867 YLPKYSYESQAV-WIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPE 925
+P+ + ++AV + P+ + LHAA HA + ++P+ C+ D+
Sbjct: 627 DMPEQTLHTRAVMYTLTPEVLAEAGIDETRLPGSLHAAEHAAIGLLPLVATCDRWDIGGV 686
Query: 926 CPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
H P + +YD + GG G +++
Sbjct: 687 STALHPDTGLPT-VFVYDGYMGGAGFAER 714
>gi|423719715|ref|ZP_17693897.1| DEAD/DEAH box helicase family protein [Geobacillus
thermoglucosidans TNO-09.020]
gi|383367459|gb|EID44738.1| DEAD/DEAH box helicase family protein [Geobacillus
thermoglucosidans TNO-09.020]
Length = 753
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 255/761 (33%), Positives = 403/761 (52%), Gaps = 78/761 (10%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E+VE LR +V+ ++ ++A V +P+ L ++AL+ GI+ LY+HQA +
Sbjct: 8 ELVEQLR----DDPNVVYWHEMEPQEANTVPMPEHLDLRLRTALEKRGIASLYTHQAAAF 63
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
A G ++V T T+SGK+LCYNLPVL+A++ + + ALY+FPTKALAQDQ L +
Sbjct: 64 EAVRNGNHIVAVTPTASGKTLCYNLPVLQAIAENEHTRALYLFPTKALAQDQKSELHEII 123
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
+ I YDGDT R +R +++TNPDMLH +ILP+H ++ + NL
Sbjct: 124 EEMGVPIYSYTYDGDTPPGIRQKIRKAGHIIMTNPDMLHSAILPHHTKWVALFENL---- 179
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
R+VVIDE H Y+G FG H A ++RRL R+C YGS P+F+ ++A
Sbjct: 180 ---------------RYVVIDELHTYRGVFGSHVANVIRRLKRICE-FYGSHPTFICTSA 223
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T +N +E L + LI N+G+P +K FV +NP S
Sbjct: 224 TLSNCKEFAERLTG-EEMTLIDNNGAPRGRKHFVFYNPPVVHPSF--------------- 267
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYR 564
N S +EV+ L + +++G++ I F RSR EL+LS+ + ++++ +I YR
Sbjct: 268 NIRKSATAEVNKLAKQFLENGIQTIVFARSRVRVELILSHLQGLIKDQLGR--KTIRGYR 325
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
GY+ ++RR IE+ G++ GV +TNALELG+D+G + V + G+PG++AS WQQAGR+
Sbjct: 326 GGYLPKERREIEKGLRSGEIIGVVSTNALELGVDIGQLQVCIMTGYPGTVASTWQQAGRA 385
Query: 625 GRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
GRR SL + VA P+DQY +++PE F+ E I+ N +L HL CAA E P
Sbjct: 386 GRRHGDSLVIMVASSSPIDQYIVQHPEYFFQRSPETARINPDNILILVDHLKCAAYELPF 445
Query: 685 SLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESE 744
EK+ G + + +L+ L A + ++ + P+H IS+R+ E
Sbjct: 446 R--RGEKFGGVEVDEVLE------FLTEQKVLHHRAGKWYWMS-DAFPAHDISLRSASQE 496
Query: 745 RYEVIDMQ---SNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADL 801
+ID+ ++ V+ E++ A ++E A+Y+H+G Y V++L+ K A ++ ++
Sbjct: 497 NVVIIDISKTGNHRVIGEMDRFSAMTLLHEEAIYLHEGVQYQVEKLDWEEKKAYVREVNV 556
Query: 802 KYFTKTRDYTDIHV-SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGII 860
+YFT +HV N ++S + +A+A + GSG I
Sbjct: 557 EYFTDANLAVQLHVLEEDRNEQRPQLSL-HYGDVSVRAMATIFKKIKLSTFENI-GSGPI 614
Query: 861 FDTVELYLPKYSYESQAVWIQVPQSV----KAVVEQNFSFRSGLHAASHALLHVVPIYVR 916
LP+ + A WI++ + + +VEQ L S+ L H+VP++V
Sbjct: 615 ------RLPEEELHTTATWIELGEELAQMDAPMVEQ------ALVGISNVLRHLVPMFVM 662
Query: 917 CNFSDL--APECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
C+ +D+ P+ PH R I LYDR+PGG G+S+ V
Sbjct: 663 CDRTDIHVVPQMKAPHSGR---PTIFLYDRYPGGIGLSEAV 700
>gi|399051156|ref|ZP_10741113.1| helicase family protein with metal-binding cysteine cluster
[Brevibacillus sp. CF112]
gi|433543627|ref|ZP_20500030.1| helicase [Brevibacillus agri BAB-2500]
gi|398051072|gb|EJL43411.1| helicase family protein with metal-binding cysteine cluster
[Brevibacillus sp. CF112]
gi|432185103|gb|ELK42601.1| helicase [Brevibacillus agri BAB-2500]
Length = 760
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 258/762 (33%), Positives = 395/762 (51%), Gaps = 77/762 (10%)
Query: 206 MVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIM 265
++EHL+ + + H I AR+A V P + + AL GI+ LY+HQ S
Sbjct: 10 ILEHLKTDERFRDNIAHWRVIPAREAKTVPFPQEMDARIREALTRRGIASLYTHQETSFR 69
Query: 266 ASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTK 325
AGK++V T T+SGKS+CY+LP+L+ L+ D + ALY+FPTKALAQDQ L +
Sbjct: 70 HVRAGKHIVAVTPTASGKSMCYHLPILQTLAEDTQARALYLFPTKALAQDQKAELHELIT 129
Query: 326 AFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAF 385
SI YDGDT R +R ++ITNPDMLH +ILP+H ++ ++F
Sbjct: 130 EMGLSIKSETYDGDTPANIRQMVRKAGNIVITNPDMLHSAILPHHTKW---------VSF 180
Query: 386 SLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTAT 445
F ++++VIDE H Y+G FG H A ++RRL R+C+ YGS P F+ ++AT
Sbjct: 181 ----------FEHLKYIVIDELHTYRGVFGSHVANVIRRLKRICA-FYGSAPQFICTSAT 229
Query: 446 SANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAAN 505
ANPRE E +EL+ N+G+P K FV +NP R + + R +A
Sbjct: 230 IANPRE-LAEALTEEQVELVDNNGAPSGVKHFVFYNPPVVNRQL---------NIRRSAT 279
Query: 506 KTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILE-ETAPHLVDSICVYR 564
+ I+E + + +G++ I F RSR E++L+Y +E+++ + P + YR
Sbjct: 280 LEARDITE------QFLTNGIQTILFARSRVRVEILLTYLQELIKRKLGPKTIQG---YR 330
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
GY+ RR IER G + GV +TNALELG+D+G + + G+PGS+AS WQQAGR+
Sbjct: 331 GGYLPSQRREIERGLRSGDIMGVVSTNALELGVDIGQLQACVITGYPGSVASTWQQAGRA 390
Query: 625 GRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
GRR+ S+ V V PLDQY + +PE F E I+ N +L HL CAA E P
Sbjct: 391 GRRQGESVVVMVGSSTPLDQYVIAHPEYFFDRSPETARINPDNLIILVDHLKCAAYELPF 450
Query: 685 SLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESE 744
+ FG + IT + +L+ + L S + ++ ++ P+H IS+R+ E
Sbjct: 451 R---EGDTFG---RAEITEVLE--FLTEEQVLHYSRGKWFWM-NDSFPAHNISLRSASQE 501
Query: 745 RYEVIDM--QSNE-VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADL 801
+ID+ + NE V+ E++ + ++E A+Y+HQG Y V++L+ K A ++ +
Sbjct: 502 NVVIIDISERGNERVIGEMDRFSSMTLLHEEAIYLHQGTQYQVEKLDYEEKKAYVREVQV 561
Query: 802 KYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIF 861
Y+T N A K+ + T+ Q+ + +++ I F
Sbjct: 562 DYYTD-----------ANLAVQLKVLEQDQTRRHGQSAFAYGEVSVHAMATIFK--KIKF 608
Query: 862 DTVE------LYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYV 915
+T E ++LP+ + A WI S+ + GL +H L HV P++V
Sbjct: 609 ETHENIGSGPIHLPEEELHTNAAWIGFSDSLLEEIGTE-DVERGLVGLAHVLQHVAPLFV 667
Query: 916 RCNFSDL--APECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
C+ DL P+ H I LYDR+PGG G+S+QV
Sbjct: 668 MCDPLDLHVIPQRKAVHSQE---PTIFLYDRYPGGIGLSEQV 706
>gi|290958527|ref|YP_003489709.1| ATP-dependent RNA helicase [Streptomyces scabiei 87.22]
gi|260648053|emb|CBG71161.1| putative ATP-dependent RNA helicase [Streptomyces scabiei 87.22]
Length = 824
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 265/785 (33%), Positives = 397/785 (50%), Gaps = 67/785 (8%)
Query: 177 RARRSQSSTSSSHSFQRRCSDKSQLLPLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEI 236
R+ RS + T+SS S P +++ L G ++ H E + R
Sbjct: 33 RSDRSPTDTASSPS------------PGTVLDRLASGPSRASRITHTEHVPPRAGRHAVW 80
Query: 237 PDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL- 295
PD + +A+++ GI ++HQA +L G++VVVAT T+SGKSL Y +PVL L
Sbjct: 81 PDRIRPEVLAAVQAAGIEHPWAHQARVAEHALDGESVVVATGTASGKSLAYLVPVLSRLL 140
Query: 296 -----SHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRD 350
+ ++ALY+ PTKALA DQ R++ ++ ++ VYDGDT ++R W+R
Sbjct: 141 DGSEAPNGRGATALYLAPTKALAADQRRSVKEFSQPLGNAVRPAVYDGDTPVEEREWVRQ 200
Query: 351 NARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAY 410
A ++TNPDMLH ILP H ++S L L+ +VVIDE H Y
Sbjct: 201 YANYVLTNPDMLHRGILPSHPRWSSFLRALK-------------------YVVIDECHTY 241
Query: 411 KGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGS 470
+G FG H A +LRRL RLC+ YG++P F+ ++AT+A P L L E + +D S
Sbjct: 242 RGVFGSHVAHVLRRLRRLCAR-YGAEPVFLLASATAAEPSVAARRLTGLPVTE-VADDAS 299
Query: 471 PCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIA 530
P + +F LW P T++ + A + ++ +E + L ++V G+R +A
Sbjct: 300 PRGELVFALWEP----------PLTELHGEKGAPVRRTA-TAETADLLTDLVVQGVRSVA 348
Query: 531 FCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAAT 590
F RSR+ EL+ +E L E L + YR GY+ E+RR +ER G+L G+AAT
Sbjct: 349 FVRSRRGAELISVIAQERLAEVDRSLARRVAAYRGGYLPEERRALERALHSGELLGLAAT 408
Query: 591 NALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYP 650
ALELGID+ +D L G+PG+ ASLWQQAGR+GR + +LAV VA + PLD + + +P
Sbjct: 409 TALELGIDISGLDAVLIAGYPGTRASLWQQAGRAGRAGQGALAVLVARDDPLDTFLVHHP 468
Query: 651 EKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYL 710
E LF P+E +D N VL HL AA E PL+ D FG + L+ L
Sbjct: 469 EALFDQPVESTVLDPDNPYVLAPHLCAAAAELPLT-DEDLPLFGPACEELLPQLEAAKLL 527
Query: 711 SSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVY 770
AK + + E+ + IR +V++ + +L ++ A V+
Sbjct: 528 R------RRAKAWHWTRRERA-ADLADIRGQGGRPVQVVETGTGRLLGTVDAGAAHTTVH 580
Query: 771 EGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQ 830
EGAV++HQG TYLV+EL+L +AL ++AD Y T RD T I V + +
Sbjct: 581 EGAVHLHQGRTYLVRELDLDDSVALVEQADPPYSTVARDTTAISVLETDT--EVPWGDGR 638
Query: 831 LTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVV 890
L + + VT F R +G + +L LP + ++AVW V +
Sbjct: 639 LCYGSVE-----VTNQVVSFLRRRLITGEVLGESKLDLPPRTLRTRAVWWTVTEDQLDAA 693
Query: 891 EQNFSFRSG-LHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGT 949
N G LHAA HA + ++P++ C+ D+ H P + +YD HPGG
Sbjct: 694 RINPEILGGALHAAEHASIGMLPLFATCDRWDIGGVSVPLHPDTLLPT-VFVYDGHPGGA 752
Query: 950 GVSKQ 954
G +++
Sbjct: 753 GFAER 757
>gi|374988609|ref|YP_004964104.1| putative ATP-dependent RNA helicase [Streptomyces bingchenggensis
BCW-1]
gi|297159261|gb|ADI08973.1| putative ATP-dependent RNA helicase [Streptomyces bingchenggensis
BCW-1]
Length = 790
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 265/768 (34%), Positives = 386/768 (50%), Gaps = 73/768 (9%)
Query: 203 PLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAE 262
P ++ L G ++ H E + R + P + A+++ GI + ++HQA
Sbjct: 16 PRTVLGRLTTGASRAARITHTEHLPPRIGTHADWPRQIRPEVVDAVQAAGIERPWAHQAR 75
Query: 263 SIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL------SHDLSSSALYMFPTKALAQDQ 316
+ +L G++VVVAT T+SGKSL Y PVL AL ++ALY+ PTKALA DQ
Sbjct: 76 TAEHALRGESVVVATGTASGKSLAYLAPVLSALLDGSEAPSGRGTTALYLAPTKALAADQ 135
Query: 317 LRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRI 376
RA+ + I VYDGDT ++R W+R A ++TNPDMLH ILP H ++S
Sbjct: 136 RRAVADLAAPLGTGIRAAVYDGDTPVEEREWVRQYANYVLTNPDMLHRGILPGHPRWSSF 195
Query: 377 LSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSD 436
L LR +VVIDE H Y+G FG H A +LRRL R+C+ YGS
Sbjct: 196 LRALR-------------------YVVIDECHTYRGVFGSHVAQVLRRLRRVCAR-YGSS 235
Query: 437 PSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTD 496
P F+ ++AT+A+P L L +E I +D SP + +F LW P T+
Sbjct: 236 PVFLLASATAADPAVAATRLTGLPVVE-ITDDSSPRGEVVFALWEP----------PLTE 284
Query: 497 MDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHL 556
+ + A + ++ +E + L ++ G+R +AF RSR+ EL+ +E L E L
Sbjct: 285 LHGEQGAPIRRTA-TAESADLLTDLAVQGVRTVAFVRSRRGAELIALIAQERLAEVDRSL 343
Query: 557 VDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIAS 616
D + YR GY+ E+RR +ER G L G+AAT ALELG+DV +D + G+PG+ AS
Sbjct: 344 ADRVAAYRGGYLPEERRALERALHSGDLLGLAATTALELGMDVAGLDAVVLAGYPGTRAS 403
Query: 617 LWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLV 676
LWQQAGR+GR + +LA+ VA + PLD Y + +PE LF+ P+E +D N VL HL
Sbjct: 404 LWQQAGRAGRAGQGALAILVARDDPLDTYLVHHPEALFRQPVESTVLDPDNPYVLAPHLC 463
Query: 677 CAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTI 736
AA E PL+ D + FG + L+ R L A + + E+ T
Sbjct: 464 AAAAELPLTEA-DLELFGPATEELMPQLEQRRLLR------RRATAWHWTRRERAADLT- 515
Query: 737 SIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALC 796
IR ++++ + +L ++ S A V+EGAV++HQG +YLVK+L+L +AL
Sbjct: 516 DIRGEGGRPVQIVEATTGRLLGTVDASAAHATVHEGAVHLHQGRSYLVKQLDLEDSVALV 575
Query: 797 QKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTT----AQALAC----TVTTTWF 848
++A Y T RD T I + L TT A C VT
Sbjct: 576 EEASPPYSTTARDTTAISI---------------LETTTEVPWGDARLCFGSVEVTNQVV 620
Query: 849 GFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVP--QSVKAVVEQNFSFRSGLHAASHA 906
F R SG + L LP + ++AVW V Q A V + LHAA HA
Sbjct: 621 SFLRRKLISGEVLGESRLDLPPRTLRTRAVWWTVTDDQLEDARVAPE-ALGGALHAAEHA 679
Query: 907 LLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
+ ++P++ C+ D+ H P + +YD HPGG G +++
Sbjct: 680 SIGMLPLFATCDRWDIGGVSIPLHPDTLLPT-VFVYDGHPGGAGFAER 726
>gi|441512261|ref|ZP_20994104.1| putative ATP-dependent helicase [Gordonia amicalis NBRC 100051]
gi|441452859|dbj|GAC52065.1| putative ATP-dependent helicase [Gordonia amicalis NBRC 100051]
Length = 775
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 248/750 (33%), Positives = 383/750 (51%), Gaps = 75/750 (10%)
Query: 220 MVHVEDISARKAVLVE----IPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVV 275
+ H+ I +R A + +P ALLD A GI ++++HQA + + G +V +
Sbjct: 25 LTHLSVIPSRPAAFADWPEWVPKALLD----AYTENGIERVWTHQARAADEAFRGNHVAI 80
Query: 276 ATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL---LAMTKAFDASID 332
T T+SGKSL Y +P+L L +D +S+ALY+ PTKAL DQ+RA+ +A F +
Sbjct: 81 CTGTASGKSLSYQMPILSTLLNDRNSTALYLAPTKALGADQIRAVSSVIAGRPEF-GHLQ 139
Query: 333 IGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEV 392
YDGDT + R W R ++R + TNPDMLH+ IL +H ++ + NLR
Sbjct: 140 PCAYDGDTDPEIRQWARVHSRWIFTNPDMLHIGILSHHARWRQFFRNLR----------- 188
Query: 393 YLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREH 452
F+V+DE H Y+G FG HTAL++RRL R+ + G+DP+ + ++AT A P E
Sbjct: 189 --------FIVVDECHHYRGVFGSHTALVMRRLLRI-ARAAGADPTVIGASATVAQPAEA 239
Query: 453 CMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPIS 512
L + + + D SP ++ LW P L V + N A S +
Sbjct: 240 LGRLIGEPAVAVTE-DSSPRGERTVALWEP-DFLPVVTGE---------NGAPVRRSAGA 288
Query: 513 EVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDR 572
E + L A+ V G R + F RSR+ EL R +L ++AP L + YRAGY+A+DR
Sbjct: 289 ESARLLADFVIEGARTLCFARSRRGVELTALSARNLLSQSAPELESRVGAYRAGYLADDR 348
Query: 573 RRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERP-- 630
R++E+ G L GVA TNALELG+D+ +D + G+PG++AS WQQAGR+GR+
Sbjct: 349 RKLEKAISDGDLLGVATTNALELGVDISGLDAVIVSGYPGTVASFWQQAGRAGRQRESGD 408
Query: 631 SLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLI--- 687
SL V VA + PLD Y + +P+ L P+E D N +L HL+CAA E PLS
Sbjct: 409 SLVVLVARDDPLDTYLVHHPDSLLGKPVEATVTDPANPYILGPHLLCAAAEKPLSETEID 468
Query: 688 -YDEKYFGSGLSS-GITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESER 745
+D + L++ G+ + G+ Y+ P I IR +
Sbjct: 469 AWDARPVAEELAAEGLLRKRKSGW---------------YVAAGVEPHAEIDIRGGIGGQ 513
Query: 746 YEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFT 805
++D +++VL ++ +A V+ GAV++HQG TYLV EL+L +AL D + T
Sbjct: 514 VLIVDTTTSQVLGTVDTGRAMSTVHPGAVHIHQGETYLVDELDLDDGLALAHPEDPDWTT 573
Query: 806 KTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVE 865
R+ TDI ++ + + + T + VT G+ R R +G + D VE
Sbjct: 574 SARETTDISIT-------STLESRRFGPLTVAFVEVDVTHQVVGYLRTLR-TGEVLDAVE 625
Query: 866 LYLPKYSYESQAV-WIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAP 924
L +P+ + ++AV + P+ + LHAA HA + ++P+ C+ D+
Sbjct: 626 LDMPEQTLHTRAVMYTLTPEVLAEAGIDETRLPGSLHAAEHAAIGLLPLVATCDRWDIGG 685
Query: 925 ECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
+ H P + +YD + GG G +++
Sbjct: 686 VSTDLHPDTGLPT-VFVYDGYMGGAGFAER 714
>gi|227541583|ref|ZP_03971632.1| ATP-dependent helicase [Corynebacterium glucuronolyticum ATCC
51866]
gi|227182551|gb|EEI63523.1| ATP-dependent helicase [Corynebacterium glucuronolyticum ATCC
51866]
Length = 742
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 252/751 (33%), Positives = 381/751 (50%), Gaps = 78/751 (10%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E+ L +G + + H+ AR A P + + L GI++L+SHQA++
Sbjct: 6 EIAAQLTNALGKE-HVEHLRITPARAATFAPYPAWVDPGLREFLTERGITRLFSHQADAA 64
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
A+ G+NVV++T TSSGKSL Y LP+L ++ ++ALY+ PTKALA DQ+R + A+
Sbjct: 65 TAAHDGENVVISTGTSSGKSLAYLLPILTRMAKQEGATALYLTPTKALATDQIRNVNAII 124
Query: 325 KAFDAS-IDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLI 383
+ S ++ YDGDT Q+ R +R+ +R + TNPDMLH +ILP H ++SR L L
Sbjct: 125 RGAGISGVNPNAYDGDTPQEVRRAVREMSRFIFTNPDMLHQAILPDHARWSRFLRRLA-- 182
Query: 384 AFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFST 443
FVVIDE H+Y+G FG H + ++ R RL +H YG+ P F+ ++
Sbjct: 183 -----------------FVVIDECHSYRGVFGAHMSQVMWRFQRLLAH-YGATPVFIAAS 224
Query: 444 ATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNA 503
AT+A+P H L + + I DG+P ++ +LW P
Sbjct: 225 ATAADPGAHAARLLGVP-VRAITRDGAPRGERTTILWTP--------------------- 262
Query: 504 ANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELV-LSYTREILEETAPHLVDSICV 562
+ +S +E +++ + ++ GLR + F RSR+ E V + E+L +
Sbjct: 263 -GEETSATTEAAHIMSVLLSEGLRTLTFVRSRRAAETVAMQCGEELLRSGRTEEAKRVAA 321
Query: 563 YRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAG 622
YRAGY+AEDRRR+ER G++ G+A TNALELGIDVG +D + GFPG+IAS QQAG
Sbjct: 322 YRAGYLAEDRRRLERQLDTGEIIGLATTNALELGIDVGGLDAVITTGFPGTIASFTQQAG 381
Query: 623 RSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEH 682
R+GRR + +L+V+VA + P+DQY + +PE L PIE + N V+E HL CAA E
Sbjct: 382 RAGRRGQGALSVFVARDEPMDQYLVHHPEALLDKPIERFAFNPANPYVVEPHLACAAAEK 441
Query: 683 PLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIE 742
PL+ + +GL + G +P L P + +R
Sbjct: 442 PLTAEEIGDFSPAGL-----VRRGNGLYYPEPGLH--------------PHQDVHLRG-G 481
Query: 743 SERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLK 802
+ ++D Q +L I+ES+A +++ GA+Y+HQG Y+ +E L IAL
Sbjct: 482 GNQVTIVDAQDGRLLGTIDESRAKSELHPGAIYLHQGRPYVSEE--LVDDIALVSPTHAD 539
Query: 803 YFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFD 862
+ T T TDI + + + + + Q VT GF R R SG I
Sbjct: 540 FSTMTLSETDIEI-------LRTVEERRRPGISVQLNEVEVTEQVTGFIRRHR-SGEILG 591
Query: 863 TVELYLPKYSYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSD 921
L+LP ++AV + P ++AV + LHAA HA + ++P+ C+ D
Sbjct: 592 QESLHLPPDVLTTRAVTYTIDPVLLEAVGLTPADWPGALHAAEHAAIGILPLIATCDRWD 651
Query: 922 LAPECPNPHDSRYFPERILLYDRHPGGTGVS 952
L H P + +YD +PGG G +
Sbjct: 652 LGGLSTADHPDTMLPT-VFVYDGYPGGAGFA 681
>gi|325675221|ref|ZP_08154906.1| DEAD/DEAH box family ATP-dependent RNA helicase [Rhodococcus equi
ATCC 33707]
gi|325553927|gb|EGD23604.1| DEAD/DEAH box family ATP-dependent RNA helicase [Rhodococcus equi
ATCC 33707]
Length = 768
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 263/736 (35%), Positives = 386/736 (52%), Gaps = 53/736 (7%)
Query: 225 DISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKS 284
D+ R + E P+ AL++ GI + +SHQAE+ + AG++VVVAT T+SGKS
Sbjct: 22 DLPPRVSSYSEWPEWADPAVVRALRAAGIPQPWSHQAEAASIAAAGEHVVVATGTASGKS 81
Query: 285 LCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFD--ASIDIGVYDGDTTQ 342
L Y LPVL AL+ + +ALY+ PTKAL DQLRA A+T++ SI ++DGDT+
Sbjct: 82 LAYQLPVLTALAGESRGTALYLSPTKALGADQLRATAALTESEPDLLSIHPCLFDGDTSI 141
Query: 343 KDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFV 402
+ R W R N+R + TNPDMLH+ IL H ++S +L NLR +V
Sbjct: 142 ELRQWARANSRWIFTNPDMLHLGILRSHQRWSHLLRNLR-------------------YV 182
Query: 403 VIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTL 462
V+DE H+Y+G FG + AL+LRRL R+ + YG+ P+FV ++AT+A+P L
Sbjct: 183 VVDECHSYRGVFGSNVALVLRRLRRIAA-RYGAHPTFVLASATTADPGAAASRLIGAPCA 241
Query: 463 ELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMV 522
+ + DGSP + LW P L SV ++ + R AA SE S + A+++
Sbjct: 242 Q-VTEDGSPHGPRTIALWEP-PLLASVTGENGAPV---RRAAG------SEASRIMADLL 290
Query: 523 QHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGG 582
G R + F RSR+ EL R L + P L D + YRAGY+AEDRR +E G
Sbjct: 291 VEGARTLTFVRSRRGAELTAIGARRALADVDPDLADRVAAYRAGYLAEDRRDLESALADG 350
Query: 583 KLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPL 642
+L GVA TNALELG+D+ +D + GFPG++AS WQQAGRSGRR + SL V VA + PL
Sbjct: 351 RLLGVATTNALELGVDIAGLDAVVVAGFPGTVASFWQQAGRSGRRGQGSLVVLVARDDPL 410
Query: 643 DQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGIT 702
D Y + +P L P+E D N VL L+CAALE PLS D + G + +T
Sbjct: 411 DTYLVHHPSALLDRPVEATVTDPTNPYVLGPQLLCAALELPLS---DAEVADFGATEVLT 467
Query: 703 TLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEE 762
L +G + A + ++ E P + IR + ++D +S +L ++
Sbjct: 468 ELAAQGLIR------RRAHGW-FVTAESDPHSALDIRGGIGAQIAIVDSESGRLLGTVDA 520
Query: 763 SKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAY 822
+A + GAV++HQG +++V L+L +AL + + T R+ TDI A
Sbjct: 521 GRAPATAHPGAVHIHQGESFVVDHLDLDEGLALVHPEEPDWTTSAREVTDI-------AI 573
Query: 823 ATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQV 882
A + + + VT G+ R SG + D+VEL +P + ++AV V
Sbjct: 574 ADVAEHKRYGEVGVALVQVEVTHQVVGYLRRLS-SGEVLDSVELDMPAQTLHTRAVMYTV 632
Query: 883 -PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILL 941
P+ ++ LHAA HA + ++P+ C+ D+ H P + +
Sbjct: 633 TPELLEEHGIGADRVPGALHAAEHAAIGLLPLVATCDRGDIGGVSTALHPDTGLPT-VFV 691
Query: 942 YDRHPGGTGVSKQVTD 957
YD HPGG G + + D
Sbjct: 692 YDGHPGGAGFADRGHD 707
>gi|294813373|ref|ZP_06772016.1| Putative ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC
27064]
gi|294325972|gb|EFG07615.1| Putative ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC
27064]
Length = 819
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 258/759 (33%), Positives = 388/759 (51%), Gaps = 55/759 (7%)
Query: 203 PLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAE 262
P E+++ L ++ H E + R P + +A++ TG+ ++HQAE
Sbjct: 47 PGEVLDRLATRADRAARITHTEHLPPRPGRHAVWPHRIRPEVINAIRLTGVEHPWTHQAE 106
Query: 263 SIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL------SHDLSSSALYMFPTKALAQDQ 316
+ +L G++VV+AT T+SGKSL Y PVL L + ++ALY+ PTKALA DQ
Sbjct: 107 AAGHALDGESVVIATGTASGKSLAYLAPVLTTLLDGAEAPNGRGATALYLAPTKALAADQ 166
Query: 317 LRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRI 376
RA+ A+ K + VYDGDT ++R W+R A ++TNPDMLH ILP H ++S
Sbjct: 167 CRAVKALAKPLGHRVRPAVYDGDTPVEEREWVRQYATYVLTNPDMLHRGILPSHPRWSSF 226
Query: 377 LSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSD 436
L +LR +VVIDE H Y+G FG H A +LRRL R+C YG+D
Sbjct: 227 LRSLR-------------------YVVIDECHTYRGVFGSHVAQVLRRLRRICVR-YGAD 266
Query: 437 PSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTD 496
P F+ ++AT+A+P L L +E + +D SP + +F LW P T+
Sbjct: 267 PVFLLASATAADPAVAAHRLTGLPVVE-VSDDASPRGELVFALWEP----------PLTE 315
Query: 497 MDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHL 556
+ R A + ++ +E + L ++ G+R +AF RSR+ EL+ +E L E L
Sbjct: 316 LRGERGAPVRRTA-TAETADLLTDLTVQGVRTVAFVRSRRGAELISVIAKERLAEVDRSL 374
Query: 557 VDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIAS 616
+ YR GY+ E+RR +E G+L G+AAT ALELG+DV +D + G+PG+ AS
Sbjct: 375 PRRVAAYRGGYLPEERRALENALHSGELLGLAATTALELGVDVSGLDAVVISGYPGTRAS 434
Query: 617 LWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLV 676
LWQQAGR+GR + +LAV VA + PLD + + +PE LF+ P+E +D N VL HL
Sbjct: 435 LWQQAGRAGRAGQGALAVLVARDDPLDTFLVHHPEALFRQPVESTVLDPDNPYVLAPHLC 494
Query: 677 CAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTI 736
AA E PL+ D FG + + L+ L A + + E+ T
Sbjct: 495 AAAAELPLTEA-DLALFGPAAAGLMPQLEGARLLR------RRATGWHWTRRERAADLT- 546
Query: 737 SIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALC 796
IR ++++ + +L ++ES A V+EGAV++HQG TYLV+ L+L +AL
Sbjct: 547 DIRGEGGRPVQIVEESTGRLLGTVDESAAHTSVHEGAVHLHQGRTYLVRRLDLEDSVALV 606
Query: 797 QKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRG 856
+ A Y T RD T + V G + +L + + VT F R
Sbjct: 607 EDAVPPYSTTARDTTSVSVLGTD--IEVPWGDGRLCYGSVE-----VTHQVVSFLRRKLM 659
Query: 857 SGIIFDTVELYLPKYSYESQAVWIQVPQS-VKAVVEQNFSFRSGLHAASHALLHVVPIYV 915
+G + +L LP ++AVW V +S + A LHAA HA + ++P++
Sbjct: 660 TGEVLGETKLDLPPRILRTRAVWWTVTESQLDAARIAPEQLGGALHAAEHASIGLLPLFA 719
Query: 916 RCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
C+ D+ H P + +YD HPGG G +++
Sbjct: 720 TCDRWDIGGVSVPLHPDTGLPT-VFVYDGHPGGAGFAER 757
>gi|312138016|ref|YP_004005352.1| dead/deah box helicase [Rhodococcus equi 103S]
gi|311887355|emb|CBH46666.1| putative DEAD/DEAH box helicase [Rhodococcus equi 103S]
Length = 768
Score = 404 bits (1038), Expect = e-109, Method: Compositional matrix adjust.
Identities = 263/736 (35%), Positives = 385/736 (52%), Gaps = 53/736 (7%)
Query: 225 DISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKS 284
D+ R + E P+ AL++ GI + +SHQAE+ + AG++VVVAT T+SGKS
Sbjct: 22 DLPPRVSSYSEWPEWADPAAVRALRAAGIPQPWSHQAEAASIAAAGEHVVVATGTASGKS 81
Query: 285 LCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFD--ASIDIGVYDGDTTQ 342
L Y LPVL AL+ + +ALY+ PTKAL DQLRA A+T++ SI ++DGDT+
Sbjct: 82 LAYQLPVLTALAGESRGTALYLSPTKALGADQLRATAALTESEPDLRSIHPCLFDGDTSI 141
Query: 343 KDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFV 402
+ R W R N+R + TNPDMLH+ IL H ++S +L NLR +V
Sbjct: 142 ELRQWARANSRWIFTNPDMLHLGILRSHQRWSHLLRNLR-------------------YV 182
Query: 403 VIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTL 462
V+DE H+Y+G FG + AL+LRRL R+ + YG+ P+FV ++AT+A P L
Sbjct: 183 VVDECHSYRGVFGSNVALVLRRLRRIAA-RYGAHPTFVLASATTAEPGAAASRLIGAPCA 241
Query: 463 ELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMV 522
+ + DGSP + LW P L SV ++ + R AA SE S + A+++
Sbjct: 242 Q-VTEDGSPHGPRTIALWEP-PLLASVTGENGAPV---RRAAG------SEASRIMADLL 290
Query: 523 QHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGG 582
G R + F RSR+ EL R L + P L D + YRAGY+AEDRR +E G
Sbjct: 291 VEGARTLTFVRSRRGAELTAIGARRALADVDPDLADRVAAYRAGYLAEDRRDLESALADG 350
Query: 583 KLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPL 642
+L GVA TNALELG+D+ +D + GFPG++AS WQQAGRSGRR + SL V VA + PL
Sbjct: 351 RLLGVATTNALELGVDIAELDAVVVAGFPGTVASFWQQAGRSGRRGQGSLVVLVARDDPL 410
Query: 643 DQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGIT 702
D Y + +P L P+E D N VL L+CAALE PLS D + G + +T
Sbjct: 411 DTYLVHHPSALLDRPVEATVTDPTNPYVLGPQLLCAALELPLS---DAEVADFGATEVLT 467
Query: 703 TLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEE 762
L +G + A + ++ E P + IR + ++D +S +L ++
Sbjct: 468 ELAAQGLIR------RRAHGW-FVTAESDPHSALDIRGGIGAQIAIVDSESGRLLGTVDA 520
Query: 763 SKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAY 822
+A + GAV++HQG +++V L+L +AL + + T R+ TDI A
Sbjct: 521 GRAPATAHPGAVHIHQGESFVVDHLDLDEGLALVHPEEPDWTTSAREVTDI-------AI 573
Query: 823 ATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQV 882
A + + + VT G+ R SG + D+VEL +P + ++AV V
Sbjct: 574 ADVAEHKRYGEVGVALVQVEVTHQVVGYLRRLS-SGEVLDSVELDMPAQTLHTRAVMYTV 632
Query: 883 -PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILL 941
P+ ++ LHAA HA + ++P+ C+ D+ H P + +
Sbjct: 633 TPELLEEHGIGADRVPGALHAAEHAAIGLLPLVATCDRGDIGGVSTALHPDTGLPT-VFV 691
Query: 942 YDRHPGGTGVSKQVTD 957
YD HPGG G + + D
Sbjct: 692 YDGHPGGAGFADRGHD 707
>gi|404329398|ref|ZP_10969846.1| ATP-dependent RNA helicase yprA [Sporolactobacillus vineae DSM
21990 = SL153]
Length = 756
Score = 404 bits (1038), Expect = e-109, Method: Compositional matrix adjust.
Identities = 253/752 (33%), Positives = 398/752 (52%), Gaps = 83/752 (11%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+VH + R+AV V P++L AL GI+ LYSHQA++ + +AGK+VV+ T T
Sbjct: 20 VVHWHTVPGREAVSVPFPESLDSRICRALNHRGINALYSHQADAFQSVMAGKDVVLVTPT 79
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGD 339
+SGK+LCYNLPVL+ L D +S ALY FPTKALAQDQ + + + + YDGD
Sbjct: 80 ASGKTLCYNLPVLQHLLDDPTSRALYFFPTKALAQDQKNEMEQLIQEIGVPLKSYTYDGD 139
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T+ R +R ++++TNPDMLH SILP+H ++ NL+
Sbjct: 140 TSGTIRQSIRRAGQIVMTNPDMLHSSILPHHTKWVSFFENLK------------------ 181
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
F+VIDE H Y+G FG H A ++RRL R+CS+ YGS P F+ ++AT NPREH L
Sbjct: 182 -FIVIDELHVYRGVFGSHVANVIRRLERICSY-YGSHPQFICTSATIRNPREHAEALTG- 238
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
+ LI +G+P +K F+ +NP V+NK Q ++ + A KT + A
Sbjct: 239 RKMTLINRNGAPAVRKHFLFYNP-----PVVNK-QLNVREDEMIAVKT---------IAA 283
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREI---LEETAPHLVDSICVYRAGYVAEDRRRIE 576
+++ ++ I F RS+ EL++S+ +EI +E A IC YR GY+ +RRRIE
Sbjct: 284 RFLKNRIQTIVFARSKLKVELLVSHLQEINSGRDEKA-----KICAYRGGYLPLERRRIE 338
Query: 577 RDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYV 636
R G + GV +TNALELG+D+G + V + G+PG++AS+WQQAGR+GRR+ ++ + V
Sbjct: 339 RGLRNGDIMGVVSTNALELGVDIGQLRVCIMTGYPGNMASVWQQAGRAGRRQGDAIIIMV 398
Query: 637 AFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSG 696
A PLDQY +P+ F E I+ N +L H+ C+A E P + FG
Sbjct: 399 ASSNPLDQYMATHPDYFFSRNPEDVRINPDNLMILADHIKCSAYELPFK---KGEKFGGQ 455
Query: 697 LSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN-- 754
+ + +L+ + L A + Y ++ P++ IS+R+ + + ++D+
Sbjct: 456 PADDLCE-----FLADEDLLHFQAGKW-YWMNDAFPANEISLRSAVQDSFAIVDVTDRGH 509
Query: 755 -EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDI 813
V+ E++ A +YE A+Y+HQG Y V +L+L + A +K ++ Y+T + +
Sbjct: 510 ARVIGEMDRFGAMTMLYEDAIYIHQGVQYHVDQLDLDERKAYIRKVNVNYYTDSDLAVQM 569
Query: 814 HVSGGNNAYATK-ISKDQ-LTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVE------ 865
V + + + DQ + +AL I F+T+E
Sbjct: 570 DVLETDEKKPLQGLDADQSFGDVSVRALPTVFKK-------------IRFETMENIGWGH 616
Query: 866 LYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLA-- 923
++LP+ + WI ++ ++ F+ L SH L H P++V C+ SDL+
Sbjct: 617 IHLPEMEMHTNGTWISFSEAWTNRFGKDV-FQGVLAGLSHLLRHAAPLFVLCDQSDLSVV 675
Query: 924 PECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
P H+ P + +YD++PGG G+SK++
Sbjct: 676 PRIKATHNE--LPT-LFIYDKYPGGIGLSKKL 704
>gi|16079280|ref|NP_390104.1| ATP-dependent helicase [Bacillus subtilis subsp. subtilis str. 168]
gi|221310138|ref|ZP_03591985.1| hypothetical protein Bsubs1_12226 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221314460|ref|ZP_03596265.1| hypothetical protein BsubsN3_12147 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221319382|ref|ZP_03600676.1| hypothetical protein BsubsJ_12073 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221323658|ref|ZP_03604952.1| hypothetical protein BsubsS_12202 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|402776480|ref|YP_006630424.1| ATP-dependent helicase [Bacillus subtilis QB928]
gi|452915036|ref|ZP_21963662.1| DEAD/DEAH box helicase family protein [Bacillus subtilis MB73/2]
gi|1730954|sp|P50830.1|YPRA_BACSU RecName: Full=Uncharacterized ATP-dependent helicase YprA
gi|1146178|gb|AAB38468.1| helicase [Bacillus subtilis subsp. subtilis str. 168]
gi|2634641|emb|CAB14139.1| putative ATP-dependent helicase [Bacillus subtilis subsp. subtilis
str. 168]
gi|402481661|gb|AFQ58170.1| Putative ATP-dependent helicase [Bacillus subtilis QB928]
gi|407959464|dbj|BAM52704.1| ATP-dependent helicase [Bacillus subtilis BEST7613]
gi|407965040|dbj|BAM58279.1| ATP-dependent helicase [Bacillus subtilis BEST7003]
gi|452115384|gb|EME05780.1| DEAD/DEAH box helicase family protein [Bacillus subtilis MB73/2]
Length = 749
Score = 404 bits (1038), Expect = e-109, Method: Compositional matrix adjust.
Identities = 243/739 (32%), Positives = 401/739 (54%), Gaps = 60/739 (8%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+V+ +I R+A +P+++ + K+AL GI +LY+HQ + G+++V T T
Sbjct: 19 VVNWHEIEPREAKTRPMPESIDERIKAALSKRGIDELYTHQYSAFQYVQKGESIVTVTPT 78
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGD 339
+SGK+LCYNLPVL++++ D ++ ALY+FPTKALAQDQ L + I YDGD
Sbjct: 79 ASGKTLCYNLPVLQSIAQDETNRALYLFPTKALAQDQKSELNEIIDEMGIDIKSFTYDGD 138
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T+ R +R ++ITNPDMLH +ILP+H ++ + NL
Sbjct: 139 TSPAIRQKVRKAGHIVITNPDMLHSAILPHHTKWVSLFENL------------------- 179
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
+++VIDE H Y+G FG H A ++RRL R+C YGSDP F+ ++AT ANP+E +L
Sbjct: 180 KYIVIDELHTYRGVFGSHVANVIRRLKRIC-RFYGSDPVFICTSATIANPKELGEQLTG- 237
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
+ L+ ++G+P +K FV +NP ++NK N S +EV+ L
Sbjct: 238 KPMRLVDDNGAPSGRKHFVFYNP-----PIVNK----------PLNIRRSATAEVNELAK 282
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDF 579
E +++ ++ I F RSR E++LS+ +E++++ SI YR GY+ ++RR IER
Sbjct: 283 EFLKNKVQTIVFARSRVRVEIILSHIQELVKKEIG--TKSIRGYRGGYLPKERREIERGL 340
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFE 639
G + GV +TNALELG+D+G + V + G+PGS+AS WQQAGR+GRR SL + VA
Sbjct: 341 REGDILGVVSTNALELGVDIGQLQVCVMTGYPGSVASAWQQAGRAGRRHGESLIIMVANS 400
Query: 640 GPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSS 699
P+DQY +++PE F E I+ +N +L HL CAA E P DE+ FG+ S
Sbjct: 401 TPIDQYIVRHPEYFFNRSPESARINPENLIILVDHLKCAAYELPFRA--DEE-FGAMEVS 457
Query: 700 GITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVI---DMQSNEV 756
I YL + L + + + + E P+ IS+R+ E ++ D+ + +
Sbjct: 458 DILE-----YLQEEAVLHRNGERYHW-ASESFPASNISLRSASQENVVIVDQSDIANVRI 511
Query: 757 LEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVS 816
+ E++ A +++ A+Y+H+G Y V++L+ K A +K D++Y YTD +++
Sbjct: 512 IGEMDRFSAMTLLHDEAIYLHEGVQYQVEKLDWDHKKAYVRKVDVEY------YTDANLA 565
Query: 817 GGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQ 876
+K++ ++T+ TV F ++ + + ++LP+ +
Sbjct: 566 VQLKVLEIDKTKEK-SRTSLHYGDVTVNALPTIFKKIKMTTFENIGSGPIHLPEEELHTS 624
Query: 877 AVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFP 936
A W+++ + + + E+ + L S+ L H+VP+Y+ C+ +D+ P
Sbjct: 625 AAWLEIKTADEDIGEK--TLEQLLLGISNVLQHIVPVYIMCDRNDVHVVSQIKAAHTGLP 682
Query: 937 ERILLYDRHPGGTGVSKQV 955
I LYD +PGG G++++V
Sbjct: 683 -TIFLYDHYPGGIGLAEEV 700
>gi|386739575|ref|YP_006212755.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis 31]
gi|384476269|gb|AFH90065.1| DEAD-box ATP dependent DNA helicase [Corynebacterium
pseudotuberculosis 31]
Length = 785
Score = 404 bits (1038), Expect = e-109, Method: Compositional matrix adjust.
Identities = 263/748 (35%), Positives = 380/748 (50%), Gaps = 71/748 (9%)
Query: 221 VHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTS 280
H+E A+ A + P+ + K AL S GI +LY+HQ E + + V+AT TS
Sbjct: 30 THLETTPAKPARYADWPEWVYPPVKEALISRGIQRLYAHQQEVAHNAWEKIDTVIATGTS 89
Query: 281 SGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAM-----TKAFDA--SIDI 333
SGKSL Y LP+L L++D ++ A+Y+ PTKAL DQL A+ A+ T DA S+
Sbjct: 90 SGKSLGYQLPILSCLAYDSTACAIYLTPTKALGSDQLNAVTALLQEAQTLGGDALDSVHP 149
Query: 334 GVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVY 393
YDGDT R +R+ +R + TNPDMLH ILP H +++R+
Sbjct: 150 APYDGDTPSDARSGIREQSRFIFTNPDMLHAGILPNHQRWARL----------------- 192
Query: 394 LIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHC 453
F +RF+VIDE H+Y+G FG +L+LRRL R+ S YGS P+ + ++ATS NP EH
Sbjct: 193 --FRHLRFIVIDECHSYRGVFGAGVSLVLRRLLRIASR-YGSTPTVILASATSNNPAEHA 249
Query: 454 MELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISE 513
EL + + D +P + +LW P L V + + R AA+ SE
Sbjct: 250 -ELLLGRPVYAVTTDSAPTGARTIMLWEP-GFLDGVEGEHGAPV---RRAAS------SE 298
Query: 514 VSYLFAEMVQHGLRCIAFCRSRKLCELV-LSYTREILEETAPHLVDSICVYRAGYVAEDR 572
+ + A ++ G R + F RSR+ EL L E+ P L I YRAGY+AEDR
Sbjct: 299 AASIMATLIAEGARTLTFVRSRRQAELTALRCAEELSYHGRPDLAPRISAYRAGYLAEDR 358
Query: 573 RRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSL 632
RRIE G+L GVA+TNALELGIDVG +D + GFPG++AS WQQAGR+GRR + SL
Sbjct: 359 RRIEEQLDNGQLLGVASTNALELGIDVGGLDAVVTAGFPGTVASFWQQAGRAGRRGQGSL 418
Query: 633 AVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKY 692
VA + P+D Y + +PE L PIE + N +L HL CAALE PLS
Sbjct: 419 VTLVARDEPMDTYLVHHPEALLGRPIERTVFNPHNPHILAGHLCCAALEAPLSDAEINSL 478
Query: 693 FGSGLSSGITT---LKNR--GYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYE 747
++ + LK+R G+ + + + SA HE ++S+R S
Sbjct: 479 GAQQVAERLERERLLKHRRHGWFAVEKPGEPSA-------HE-----SVSLRGSGSA-IT 525
Query: 748 VIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKT 807
++D VL IE+++A QV+ GAVY+HQG ++++ L+L +AL + T
Sbjct: 526 IVDETDGRVLGTIEQTRAVSQVHPGAVYLHQGESFIISSLDLEQHLALAHPDAPDHSTYA 585
Query: 808 RDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELY 867
R TDI + G + A ++ L VT G Y + G + D V L
Sbjct: 586 RSTTDIRILGEVDKVANPAPGLWVSN-----LNVEVTDRVTG-YVVKAPDGSVLDVVPLQ 639
Query: 868 LPKYSYESQAVWIQVPQSVKAVVEQNFSFR---SGLHAASHALLHVVPIYVRCNFSDLAP 924
+P + ++A V ++ ++ LHAA HA + ++P+ C+ D+
Sbjct: 640 MPPQTLITRA----VAYTIDPLILDQLGITDVPGALHAAEHAAIGILPLIATCDRWDIGG 695
Query: 925 ECPNPHDSRYFPERILLYDRHPGGTGVS 952
H P + +YD HPGG G +
Sbjct: 696 VSTEMHPDTGLPT-VFVYDGHPGGAGFT 722
>gi|397653069|ref|YP_006493752.1| hypothetical protein CULC0102_0316 [Corynebacterium ulcerans 0102]
gi|393402025|dbj|BAM26517.1| hypothetical protein CULC0102_0316 [Corynebacterium ulcerans 0102]
Length = 785
Score = 404 bits (1037), Expect = e-109, Method: Compositional matrix adjust.
Identities = 263/741 (35%), Positives = 372/741 (50%), Gaps = 57/741 (7%)
Query: 221 VHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTS 280
H+E A+ A E P+ + K AL + GI +LYSHQ E + + V+AT TS
Sbjct: 30 THLETAPAKPARYAEWPEWVYPPIKEALVNRGIQRLYSHQQEVAHNAWEKIDTVIATGTS 89
Query: 281 SGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALL-----AMTKAFDA--SIDI 333
SGKSL Y LP+L L++D ++ A+Y+ PTKAL DQL A+ A T D S+
Sbjct: 90 SGKSLGYQLPILSCLAYDSTACAIYLTPTKALGSDQLNAVTQLVREAQTMGGDTLRSVHP 149
Query: 334 GVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVY 393
YDGDT R +R+ +R + TNPDMLH ILP H +++R+
Sbjct: 150 APYDGDTPSDARSGIREQSRFIFTNPDMLHAGILPNHQRWARL----------------- 192
Query: 394 LIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHC 453
F +RF+VIDE H+Y+G FG +L+LRRL R+ + YGS P+ + ++ATS NP EH
Sbjct: 193 --FRHLRFIVIDECHSYRGVFGAGVSLVLRRLLRIAAR-YGSTPTVILASATSNNPAEHA 249
Query: 454 MELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISE 513
EL + + D +P + +LW P L V + + R AA+ SE
Sbjct: 250 -ELLLGRPVHAVTTDSAPTGARTVMLWEP-GFLDGVEGEHGAPV---RRAAS------SE 298
Query: 514 VSYLFAEMVQHGLRCIAFCRSRKLCELV-LSYTREILEETAPHLVDSICVYRAGYVAEDR 572
+ + A ++ G R + F RSR+ EL L E+ P L I YRAGY+AEDR
Sbjct: 299 AASIMATLIAEGARTLTFVRSRRQAELTALRCAEELSYHGRPELARRISAYRAGYLAEDR 358
Query: 573 RRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSL 632
R+IE G+L GVA+TNALELGIDVG +D + GFPG++AS WQQAGR+GRR + SL
Sbjct: 359 RKIEEQLDNGELLGVASTNALELGIDVGGLDAVVTAGFPGTVASFWQQAGRAGRRGQGSL 418
Query: 633 AVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKY 692
VA + P+D Y + +PE L PIE + N +L HL CAA E PLS D +
Sbjct: 419 VTLVARDEPMDTYLVHHPEALLGRPIERTVFNPHNPHILAGHLCCAASEAPLS---DAEI 475
Query: 693 FGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHT-ISIRAIESERYEVIDM 751
G L+ G L F + P+H +S+R S ++D
Sbjct: 476 NALGAQQVAEQLEREGLLRH-----RRHGWFAVEKPGEPPAHELVSLRGSGSA-ITIVDE 529
Query: 752 QSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYT 811
VL IE+++A QV+ GAVY+H+G T+++ L+L ++AL Y T R T
Sbjct: 530 TDGRVLGTIEQTRAVSQVHPGAVYLHRGETFVINSLDLDQRLALASPDAPDYSTYARSTT 589
Query: 812 DIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKY 871
DI + G + A ++ L VT G Y + G + D V L LP
Sbjct: 590 DIRILGEVDKVANPAPGLWVSN-----LDVEVTDRVTG-YVVKAPDGSVLDMVPLQLPPQ 643
Query: 872 SYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHD 931
+ ++AV + V + LHAA HA + ++P+ C+ D+ H
Sbjct: 644 TLVTRAVAYTIDPLVLTQLGIT-DIPGALHAAEHAAIGILPLIATCDRWDIGGVSTELHP 702
Query: 932 SRYFPERILLYDRHPGGTGVS 952
P + +YD HPGG G +
Sbjct: 703 DTGLPT-VFVYDGHPGGAGFA 722
>gi|393220235|gb|EJD05721.1| DEAD/H helicase [Fomitiporia mediterranea MF3/22]
Length = 1108
Score = 404 bits (1037), Expect = e-109, Method: Compositional matrix adjust.
Identities = 253/730 (34%), Positives = 385/730 (52%), Gaps = 97/730 (13%)
Query: 234 VEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLE 293
V + ++++ +S+ K IS YSHQA +I A GKNV+V+T T+SGKS+ Y +P+L
Sbjct: 317 VPVSNSIMQALRSSRK---ISSFYSHQATAIDAIREGKNVIVSTSTASGKSVIYQVPMLR 373
Query: 294 ALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDA--SIDIGVYDGDTTQKDRMW-LRD 350
L D ++ ALY++PTKALAQDQ AL + + + + + YDGDT + R +R
Sbjct: 374 FLEEDPNAKALYIYPTKALAQDQRVALEQLLWSCEGLEHVKVANYDGDTPMEQREGSIRT 433
Query: 351 NARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAY 410
++ ++ TN DMLH SILP+ + + L+L+A +DE H Y
Sbjct: 434 SSSVIFTNFDMLHASILPHEENWRQFFKALKLVA-------------------VDELHYY 474
Query: 411 KGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGS 470
G FG H A I+RRL R+C+ V FV +AT +NP +H + + +E+I +DG+
Sbjct: 475 SGVFGTHVAYIIRRLRRICAAVGNRRIRFVSCSATISNPFQHMKSIFGVDNIEVITDDGA 534
Query: 471 PCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIA 530
P +K F++WNP + S + E + L +++ G+R I
Sbjct: 535 PSGRKDFLIWNPPPNDPMDPTLGR-------------HSTLVESTSLMRFLMKKGVRTIL 581
Query: 531 FCRSRKLCELVLSYTREILEETAPH-LVDSICVYRAG----------------------- 566
FC+ RK+CEL + R+ L H ++ + YR G
Sbjct: 582 FCKYRKMCELAMKTLRQDLSAEGRHDILKRVMAYRGGDVSNLVYQPAKFMYKLTSTNVIG 641
Query: 567 YVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGR 626
Y +DRR+IE + F G L G+ ATNALELG+D+G +D + LGFP IAS+ QQAGR+GR
Sbjct: 642 YSQKDRRKIEHEAFSGNLLGIVATNALELGVDIGALDAVIMLGFPLGIASMRQQAGRAGR 701
Query: 627 RERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSL 686
R R +LAV VA PLDQY+++ P LF S ++ ID + ++E HL CAA E PL+
Sbjct: 702 RARDALAVLVADSLPLDQYYVQNPNDLFDSNVDDLLIDLDSKVIIEAHLHCAAFEMPLTE 761
Query: 687 IYDEKYFGSGLS---SGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIES 743
D YFG L T G+ +P K Y PS +SIR I+
Sbjct: 762 -EDSAYFGPRLDKICQASLTRDKDGWYHPNP------KFLPY------PSKHVSIRGIQE 808
Query: 744 ERYEVIDMQ------SNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQ 797
+ Y VID S ++LEEIE S+A F+ +EGAV+MHQG TY+V E++ S+IA
Sbjct: 809 DIYTVIDTTDVSQGGSAKLLEEIEVSRAMFEAFEGAVFMHQGMTYIVTEVSHDSRIAKII 868
Query: 798 KADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGS 857
+AD+ + TK RD+T+I + T+I + + + A + + T FG++++ +
Sbjct: 869 RADVNWTTKPRDFTNI-----DALKTTRIREIKGSTIRAYYGSIELKTVVFGYFKIR--N 921
Query: 858 GIIFDTVELYLPKYSYESQAVWIQVPQSVKAVV-EQNFSFRSGLHAASHALLHVVPIYVR 916
+I DTV L +P + + WI +P+S ++ + + +H+A HA L+ P+
Sbjct: 922 NVILDTVGLEMPPFERNTTGFWIDLPKSTLEILRRKGINAAEAIHSAEHAFLNRFPMS-- 979
Query: 917 CNFSDLAPEC 926
+D+ EC
Sbjct: 980 ---ADVGTEC 986
>gi|428279687|ref|YP_005561422.1| hypothetical protein BSNT_03309 [Bacillus subtilis subsp. natto
BEST195]
gi|291484644|dbj|BAI85719.1| hypothetical protein BSNT_03309 [Bacillus subtilis subsp. natto
BEST195]
Length = 749
Score = 404 bits (1037), Expect = e-109, Method: Compositional matrix adjust.
Identities = 243/739 (32%), Positives = 401/739 (54%), Gaps = 60/739 (8%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+V+ +I R+A +P+++ + K+AL GI +LY+HQ + G+++V T T
Sbjct: 19 VVNWHEIEPREAKTRPMPESIDERIKAALSKRGIDELYTHQYSAFQYVQKGESIVTVTPT 78
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGD 339
+SGK+LCYNLPVL++++ D ++ ALY+FPTKALAQDQ L + I YDGD
Sbjct: 79 ASGKTLCYNLPVLQSIAQDETNRALYLFPTKALAQDQKSELNEIIDEMGIDIKSFTYDGD 138
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T+ R +R ++ITNPDMLH +ILP+H ++ + NL
Sbjct: 139 TSPAIRQKVRKAGHIVITNPDMLHSAILPHHTKWVSLFENL------------------- 179
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
+++VIDE H Y+G FG H A ++RRL R+C YGSDP F+ ++AT ANP+E +L
Sbjct: 180 KYIVIDELHTYRGVFGSHVANVIRRLKRIC-RFYGSDPVFICTSATIANPKELGEQLTG- 237
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
+ L+ ++G+P +K FV +NP ++NK N S +EV+ L
Sbjct: 238 KPMRLVDDNGAPSGRKHFVFYNP-----PIVNK----------PLNIRRSATAEVNELAK 282
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDF 579
E +++ ++ I F RSR E++LS+ +E++++ SI YR GY+ ++RR IER
Sbjct: 283 EFLKNKVQTIVFARSRVRVEIILSHIQELVKKEIG--TKSIRGYRGGYLPKERREIERGL 340
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFE 639
G + GV +TNALELG+D+G + V + G+PGS+AS WQQAGR+GRR SL + VA
Sbjct: 341 REGDILGVVSTNALELGVDIGQLQVCVMTGYPGSVASAWQQAGRAGRRHGESLIILVANS 400
Query: 640 GPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSS 699
P+DQY +++PE F E I+ +N +L HL CAA E P DE+ FG+ S
Sbjct: 401 TPIDQYIVRHPEYFFNRSPESARINPENLIILVDHLKCAAYELPFRA--DEE-FGAMEVS 457
Query: 700 GITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVI---DMQSNEV 756
I YL + L + + + + E P+ IS+R+ E ++ D+ + +
Sbjct: 458 DILE-----YLQEEAVLHRNGERYHW-ASESFPASNISLRSASQENVVIVDQSDIANVRI 511
Query: 757 LEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVS 816
+ E++ A +++ A+Y+H+G Y V++L+ K A +K D++Y YTD +++
Sbjct: 512 IGEMDRFSAMTLLHDEAIYLHEGVQYQVEKLDWDHKKAYVRKVDVEY------YTDANLA 565
Query: 817 GGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQ 876
+K++ ++T+ TV F ++ + + ++LP+ +
Sbjct: 566 VQLKVLEIDKTKEK-SRTSLHYGDVTVNALPTIFKKIKMTTFENIGSGPIHLPEEELHTS 624
Query: 877 AVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFP 936
A W+++ + + + E+ + L S+ L H+VP+Y+ C+ +D+ P
Sbjct: 625 AAWLEIKTADEDIGEK--TLEQLLLGISNVLQHIVPVYIMCDRNDVHVVSQIKAAHTGLP 682
Query: 937 ERILLYDRHPGGTGVSKQV 955
I LYD +PGG G++++V
Sbjct: 683 -TIFLYDHYPGGIGLAEEV 700
>gi|332798933|ref|YP_004460432.1| DEAD/DEAH box helicase domain-containing protein [Tepidanaerobacter
acetatoxydans Re1]
gi|332696668|gb|AEE91125.1| DEAD/DEAH box helicase domain protein [Tepidanaerobacter
acetatoxydans Re1]
Length = 752
Score = 404 bits (1037), Expect = e-109, Method: Compositional matrix adjust.
Identities = 239/728 (32%), Positives = 396/728 (54%), Gaps = 61/728 (8%)
Query: 235 EIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEA 294
+ P+ L SALK GI +LYSHQ +++ A N+ V T T+SGKSLCYNLPVL
Sbjct: 35 DFPEYLNPKLVSALKKKGIYRLYSHQRKALDEVTAKNNITVVTPTASGKSLCYNLPVLND 94
Query: 295 LSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARL 354
L D +S A+Y+FPTKAL+QDQ+ L+ + +I YDGDT R+ +R + +
Sbjct: 95 LLADKNSRAIYLFPTKALSQDQVSELMNLVNVMGENIKTFTYDGDTPVNARVAIRKDGHI 154
Query: 355 LITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAF 414
++TNPDMLH ILP+H ++ ++ SNL ++VVIDE H Y+G F
Sbjct: 155 VVTNPDMLHTGILPHHTKWMKLFSNL-------------------KYVVIDEIHMYRGIF 195
Query: 415 GCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQ 474
G HTA +LRRL R+C YGSDP F+ +AT ANPRE ++ + + LI ++G+P +
Sbjct: 196 GSHTANVLRRLKRIC-RFYGSDPIFICCSATIANPRELAEKITE-TPMVLIDHNGAPSGE 253
Query: 475 KLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRS 534
K + +NP V+N R + SS + E L +++ ++ I F RS
Sbjct: 254 KNIIFYNP-----PVVN---------RQLGIRRSS-LLEAKTLALTFLKNKIQTIIFARS 298
Query: 535 RKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALE 594
R E++L+Y R+ + ++ P ++ + YR GY+ ++RR IE+ G++ GV +TNALE
Sbjct: 299 RLAVEVLLTYLRDEM-KSIPGGMNLVKGYRGGYLPKERREIEKGLRDGEIFGVVSTNALE 357
Query: 595 LGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLF 654
LG+D+G++D ++ G+PGS+AS WQQ GR+GRR S ++ VA PLDQ+ + +PE F
Sbjct: 358 LGVDIGNLDASIITGYPGSVASTWQQTGRAGRRNSLSASILVASSSPLDQFIINHPEYFF 417
Query: 655 KSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDP 714
++ E I+ N +L H+ CAA E P + D + FG I + + +L +
Sbjct: 418 EASPEHGLINPNNLYILVSHIKCAAFELPFA---DGETFG---KENIYEILD--FLEGER 469
Query: 715 SLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN-EVLEEIEESKAFFQVYEGA 773
L + ++ E P+ +S+R+ +E + +ID+ + +V+ E+++S A ++E A
Sbjct: 470 ILRHVGGRWHWMA-ESFPAEEVSLRSASAENFVIIDITKDAKVIGEVDQSSAPMMIHEEA 528
Query: 774 VYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTK 833
+Y+H G Y V++L+ K A +K D Y+T +I V ++ + +
Sbjct: 529 IYIHAGQQYQVEKLDYEEKKAYVRKVDADYYTDANLAVEIKVLDVFREKTVDNGQNYVGE 588
Query: 834 TTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQN 893
+LA T F + + + F ++LP + A W+ +P+++K + +
Sbjct: 589 VMVTSLA-----TMFKKIKFFTHENLGFG--HIHLPPEEMHTTAYWLSIPENIKELSRE- 640
Query: 894 FSFRSGLHAASHALLHVVPIYVRCNFSDL--APECPNPHDSRYFPERILLYDRHPGGTGV 951
SGL + ++++ P+Y+ C+ D+ + +P + I +YD PGG G
Sbjct: 641 -EMESGLLGLCNVMVNIAPLYLMCDPKDIRGVVQIKSPFTQK---PTIYIYDNFPGGVGF 696
Query: 952 SKQVTDMK 959
S+++ +M+
Sbjct: 697 SEKLYNME 704
>gi|304404447|ref|ZP_07386108.1| DEAD/DEAH box helicase domain protein [Paenibacillus
curdlanolyticus YK9]
gi|304346254|gb|EFM12087.1| DEAD/DEAH box helicase domain protein [Paenibacillus
curdlanolyticus YK9]
Length = 761
Score = 404 bits (1037), Expect = e-109, Method: Compositional matrix adjust.
Identities = 254/762 (33%), Positives = 400/762 (52%), Gaps = 71/762 (9%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E +E L++ + H I R+A +P+ L AL+S G+ +LY HQ+ +
Sbjct: 13 EWLEELKQEPELMDNVTHWHTIPPREARTAPLPEDLDPQLADALRSRGVDELYVHQSLAY 72
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
A GK+VV T T+SGK++CYNLPVL++L + ALYMFPTKALAQDQ+ L +
Sbjct: 73 RAVREGKHVVAVTPTASGKTMCYNLPVLQSLLENDDGRALYMFPTKALAQDQVAELQKLA 132
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
A I YDGDT R +R+ +++TNPDMLH +ILP+H ++ ++ N
Sbjct: 133 DLMGAPIKTHTYDGDTPPTVRQAIRNAGHIVVTNPDMLHSAILPHHTKWVKLFEN----- 187
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
IR++VIDE HAY+G FG H A ++RRL R+C YGS P F+ ++A
Sbjct: 188 --------------IRYIVIDELHAYRGVFGSHVANVIRRLKRICK-FYGSSPQFICASA 232
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T NP+EH L ++ L+ ++G+P +K FV +NP V+N+
Sbjct: 233 TIDNPQEHAERLIG-ESVALVNDNGAPMGEKHFVFYNP-----PVVNEQ----------L 276
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYR 564
S + E L +++ G++ I F RSR EL+L+Y +E++++ +I YR
Sbjct: 277 GIRRSSVLETRKLAGMLLKQGVQTIVFARSRVRVELLLTYLQELVKDKIGD--RTIRGYR 334
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
GY+ + RR IER G++ GV +TNALELGID+G + + G+PG++AS WQQ+GR+
Sbjct: 335 GGYLPKLRREIERGLRNGEIRGVVSTNALELGIDIGQLQACVLNGYPGTVASTWQQSGRA 394
Query: 625 GRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
GRR+ S+ VA PLDQY ++ P+ F P E I N +L H+ CAA E P
Sbjct: 395 GRRQTSSVTFMVASSNPLDQYIIQNPDFFFNRPPERALIHPDNLLILIDHVKCAAYELP- 453
Query: 685 SLIYDEKYFGSGLSSGITTLKNR-GYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIES 743
F +G G TL++ +L + L S + Y + P+H IS+R+
Sbjct: 454 --------FQAGEQFGSETLEDMLEFLVEEKVLHRSGSRW-YWMEQSFPAHGISLRSAAQ 504
Query: 744 ERYEVIDM-QSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLK 802
E + +ID+ + + VL E++ A ++E A+Y+H+G Y V++L+ + K A ++ D+
Sbjct: 505 ENFIIIDLSEGSRVLGEVDRFSAPTLIHEEAIYIHEGVQYQVEKLDYAEKKAYVREVDVD 564
Query: 803 YFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWR----GSG 858
Y+T ++ V +A ++S ++ +T + + T F RL GSG
Sbjct: 565 YYTDANLAVELKVL---HADKERVS-GEIVRTYGE-VTVNAKATIFKKIRLRTHENIGSG 619
Query: 859 IIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCN 918
I +LP+ + W + A N + L ++ L+H+ PIY+ C+
Sbjct: 620 PI------HLPEEELHTSGYWFAFSEEAAAGKGTN-EMQCALLGIANVLVHIAPIYLMCD 672
Query: 919 FSDL--APECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDM 958
D+ P+ H R I YDR+PGG G+S+++ ++
Sbjct: 673 PLDIRVVPQVKAVHTQR---PTIYFYDRYPGGIGLSERLFEV 711
>gi|384514809|ref|YP_005709901.1| hypothetical protein CULC809_00267 [Corynebacterium ulcerans 809]
gi|334696010|gb|AEG80807.1| hypothetical protein CULC809_00267 [Corynebacterium ulcerans 809]
Length = 785
Score = 404 bits (1037), Expect = e-109, Method: Compositional matrix adjust.
Identities = 260/745 (34%), Positives = 375/745 (50%), Gaps = 65/745 (8%)
Query: 221 VHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTS 280
H+E A+ A E P+ + K AL + GI +LYSHQ E + + V+AT TS
Sbjct: 30 THLETAPAKPARYAEWPEWVYPPIKEALVNRGIQRLYSHQQEVAHNAWEKIDTVIATGTS 89
Query: 281 SGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDA-------SIDI 333
SGKSL Y LP+L L++D ++ A+Y+ PTKAL DQL A+ + + A S+
Sbjct: 90 SGKSLGYQLPILSCLAYDSTACAIYLTPTKALGSDQLNAVTQLVREAQAMGGDTLRSVHP 149
Query: 334 GVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVY 393
YDGDT R +R+ +R + TNPDMLH ILP H ++ R+
Sbjct: 150 APYDGDTPSDARSGIREQSRFIFTNPDMLHAGILPNHQRWVRL----------------- 192
Query: 394 LIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHC 453
F +RF+VIDE H+Y+G FG +L+LRRL R+ + YGS P+ + ++ATS NP EH
Sbjct: 193 --FRHLRFIVIDECHSYRGVFGAGVSLVLRRLLRIAAR-YGSTPTVILASATSNNPAEHA 249
Query: 454 MELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISE 513
EL + + D +P + +LW P L V + + R AA+ SE
Sbjct: 250 -ELLLGRPVHAVTTDSAPTGARTVMLWEP-GFLDGVEGEHGAPV---RRAAS------SE 298
Query: 514 VSYLFAEMVQHGLRCIAFCRSRKLCELV-LSYTREILEETAPHLVDSICVYRAGYVAEDR 572
+ + A ++ G R + F RSR+ EL L T E+ P L I YRAGY+AEDR
Sbjct: 299 AASIMATLIAEGARTLTFVRSRRQAELTALRCTEELSYHGRPDLARRISAYRAGYLAEDR 358
Query: 573 RRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSL 632
R+IE G+L GVA+TNALELGIDVG +D + GFPG++AS WQQAGR+GRR + SL
Sbjct: 359 RKIEEQLDNGELLGVASTNALELGIDVGGLDAVVTAGFPGTVASFWQQAGRAGRRGQGSL 418
Query: 633 AVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLS-----LI 687
VA + P+D Y + +PE L PIE + N +L HL CAA E PLS +
Sbjct: 419 VTLVARDEPMDTYLVHHPEALLGRPIERTVFNPHNPHILAGHLCCAASEAPLSDAEINAL 478
Query: 688 YDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYE 747
++ G+ + G+ + + K E HE +S+R S
Sbjct: 479 RAQQVAEQLEREGLLRHRRHGWFAVE-------KPGEPPAHE-----LVSLRGSGSA-IT 525
Query: 748 VIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKT 807
++D VL IE+++A QV+ GAVY+H+G T+++ L+L ++AL + Y T
Sbjct: 526 IVDETDGRVLGTIEQTRAVSQVHPGAVYLHRGETFVINSLDLDQRLALARSDAPDYSTYA 585
Query: 808 RDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELY 867
R TDI + G + A ++ L VT G Y + G + D V L
Sbjct: 586 RSTTDIRILGEVDKVANPAPGLWVSN-----LHVEVTDRVTG-YVVKAPDGSVLDMVPLQ 639
Query: 868 LPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECP 927
LP + ++AV + V + LHAA HA + ++P+ C+ D+
Sbjct: 640 LPPQTLVTRAVAYTIDPLVLTQLGIT-DIPGALHAAEHAAIGILPLIATCDRWDIGGVST 698
Query: 928 NPHDSRYFPERILLYDRHPGGTGVS 952
H P + +YD HPGG G +
Sbjct: 699 ELHPDTGLPT-VFVYDGHPGGAGFA 722
>gi|56963784|ref|YP_175515.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
gi|56910027|dbj|BAD64554.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
Length = 756
Score = 404 bits (1037), Expect = e-109, Method: Compositional matrix adjust.
Identities = 252/752 (33%), Positives = 399/752 (53%), Gaps = 93/752 (12%)
Query: 224 EDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGK 283
++I+ +A V P L N AL+ GI +LY+HQAE+ +LA K+ V T T+SGK
Sbjct: 23 KEIAPLEAKTVPFPAELDFNICQALRKKGIGELYTHQAEAFEKALANKHFVAVTPTASGK 82
Query: 284 SLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQK 343
SLCYNLPVL+ ++ S ALY+FPTKALAQDQ+ L M I YDGDT +
Sbjct: 83 SLCYNLPVLQEIAASPHSRALYLFPTKALAQDQMSDLHGMIADIGMDIKCHTYDGDTAPQ 142
Query: 344 DRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVV 403
R +R +++TNPDMLH++ILP+H ++ ++F F +R++V
Sbjct: 143 IRTSIRKAGHIVLTNPDMLHVAILPHHTKW---------VSF----------FEHLRYIV 183
Query: 404 IDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLE 463
IDE H Y+G FG H A ++ RL R+C++ YG++P F+ ++AT ANP+E EL ST +
Sbjct: 184 IDELHTYRGVFGSHVANVIARLKRICAY-YGANPQFICTSATIANPKELAQELTG-STFD 241
Query: 464 LIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQ 523
LI ++G+P +K F+ +NP + L Q S +++V+ L ++
Sbjct: 242 LIDDNGAPRGKKHFLFYNP-PLVNEPLQIRQ--------------SAVAKVNELAGMFLK 286
Query: 524 HGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGK 583
G++ I F +SR EL+LS +E+ + T +I YR GY+ + RR IER G+
Sbjct: 287 EGIQTIVFAKSRVRVELILSRLQELTKRTFNR--SAIRGYRGGYLPKQRREIERGLRSGE 344
Query: 584 LCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLD 643
+ GV +TNALELG+D+G ++V + G+PGSIAS WQQAGR+GRR++ S + VA PLD
Sbjct: 345 IKGVVSTNALELGVDIGQLEVCIMTGYPGSIASSWQQAGRAGRRQKESCVIMVAASTPLD 404
Query: 644 QYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITT 703
QY +K P F+ P E ++ N + HL CAA E P S+ FG +
Sbjct: 405 QYIIKNPHYFFERPPETARLNPHNLVIFIDHLKCAAYELPFSM---GDVFGDEVVDDYLD 461
Query: 704 LKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVI---DMQSNEVLEEI 760
YL+ L ++ + ++ + P+H IS+R+ E +I D+ ++ V+ E+
Sbjct: 462 -----YLTEQHVLHANNGKWHWMS-DAFPAHGISLRSASQENVVIIDQSDVTNHRVIGEM 515
Query: 761 EESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFT--------------K 806
+ A ++E A+Y+H+G Y V++L+ K A ++ ++YFT +
Sbjct: 516 DRFSAMTLLHEEAIYLHEGVQYQVEQLDWDEKKAFVREVSVEYFTDANLAVSLRVLEEDE 575
Query: 807 TRDYTDIHVSGGNNAYATKISK-DQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVE 865
+R+ D+ +S G+ + K + +L +T + + GSG I
Sbjct: 576 SREEGDVQLSFGDVSVTGKATIFKKLRISTLENI----------------GSGPI----- 614
Query: 866 LYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDL--A 923
+LP+ + +W+ + + ++ F L A +H L HV P+ + C+ D+
Sbjct: 615 -HLPEEELHTNGMWLSFKSELVETIGES-DFEEALVALAHLLHHVAPVRIMCDRGDIHVV 672
Query: 924 PECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
P+ H P I LYD +PGG G++K+V
Sbjct: 673 PQRKATHSG--LPT-IFLYDSYPGGIGLAKEV 701
>gi|300779977|ref|ZP_07089833.1| DEAD/DEAH box family ATP-dependent RNA helicase [Corynebacterium
genitalium ATCC 33030]
gi|300534087|gb|EFK55146.1| DEAD/DEAH box family ATP-dependent RNA helicase [Corynebacterium
genitalium ATCC 33030]
Length = 788
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 257/773 (33%), Positives = 392/773 (50%), Gaps = 79/773 (10%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E++E L + QG + H + R A VE P + ++ L I+ +SHQAE
Sbjct: 7 ELLEGLTRAC-PQGTITHARTVPGRPARHVEWPQWTDEALRTTLIDASITLPFSHQAECA 65
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
+ G++VVVAT TSSGKSL Y LPVL L+ D ++ A+Y+ PTKAL DQL A+ +
Sbjct: 66 QLARDGRDVVVATGTSSGKSLGYQLPVLTTLAEDPTACAIYLTPTKALGSDQLMAVNTLI 125
Query: 325 K-------AFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRIL 377
K A A I+ YDGDT + R +R+ R + TNPDMLH IL H +++R+L
Sbjct: 126 KGHPVLGGAGSAPINPAPYDGDTPTEARPVVRETTRFVFTNPDMLHAGILSGHPKWARLL 185
Query: 378 SNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDP 437
+LR +VV+DE H+Y+G FG + AL+LRRL R+ + YGS P
Sbjct: 186 RHLR-------------------YVVVDECHSYRGVFGANVALVLRRLDRI-ARAYGSRP 225
Query: 438 SFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDM 497
FV ++AT+A+P H L + + DG+P ++ F LW P + ++ +
Sbjct: 226 VFVCASATAADPAVHASRLTGRD-VTAVTEDGAPTGERTFALWEP-----GFIEGAEGE- 278
Query: 498 DDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELV-LSYTREILEETAPHL 556
N A + +E + + A++V G R + F RSR+ E+V + +++
Sbjct: 279 ----NGAPVRRAATTEAATIMADLVGAGARTLTFVRSRRAAEIVAMRAAEDLVAAGRADF 334
Query: 557 VDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIAS 616
I YRAGY+AEDRR +ER G + G+A TNALELGIDVG +D + GFPG++AS
Sbjct: 335 AQRIASYRAGYLAEDRRALERALDNGDVLGMATTNALELGIDVGGLDAVVMAGFPGTVAS 394
Query: 617 LWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLV 676
QQAGRSGRR + SL V VA + P+D Y + +PE L P+E + N +L H+
Sbjct: 395 FRQQAGRSGRRGQSSLVVMVARDEPMDTYLVHHPEALLDRPVENSVFNPWNPFILRGHVY 454
Query: 677 CAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLS-------SDPSLDSSAKIFEYIGHE 729
CAA+E PL+ DE ++ + L+ +G+L + P LD I H
Sbjct: 455 CAAVEKPLT--PDEAAASDSIARTVAELEEQGFLRRRAKGWFAVPQLDG--PITPESAHA 510
Query: 730 KMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNL 789
++S+R + ++D+ +L ++ +A QV++GAVY+HQG ++++EL+L
Sbjct: 511 -----SVSLRGGTGDEVMIVDVTDGRLLGTVDSDRAMSQVHDGAVYVHQGEFFVIEELDL 565
Query: 790 SSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACT---VTTT 846
+AL + Y T R TDI V G + D++ + +A VT
Sbjct: 566 EGYVALARPEMPDYSTMARSTTDIAVIG---------TVDKVNPSPGLWVASVDVEVTDR 616
Query: 847 WFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSG-----LH 901
G Y + G + + L P + ++A V ++ VV +G LH
Sbjct: 617 VTG-YVVKLSDGTTSEHIPLDFPPQTLVTRA----VAYTIDPVVLDELGIAAGDVPGTLH 671
Query: 902 AASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
AA HA + ++P+ C+ D+ H P + +YD HPGG G + +
Sbjct: 672 AAEHAAIGLLPLLATCDRWDIGGVSTALHPDTMLPT-VFVYDGHPGGAGFADE 723
>gi|196248376|ref|ZP_03147077.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. G11MC16]
gi|196212101|gb|EDY06859.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. G11MC16]
Length = 766
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 257/759 (33%), Positives = 392/759 (51%), Gaps = 74/759 (9%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E +E LR+ +V+ +I ++A V P + ++AL++ GI+ LY+HQA +
Sbjct: 8 EWIEQLRQ----DPNVVYWHEIEPKEADTVPFPAEIDARLRAALEARGIASLYTHQAAAY 63
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
A +G+NVV T T+SGK+LCYNLPVL+A++ S ALY+FPTKALAQDQ L +
Sbjct: 64 EAVQSGRNVVAVTPTASGKTLCYNLPVLQAIAKAPESRALYLFPTKALAQDQKNELNEII 123
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
D I YDGDT R +R ++ITNPDMLH +ILP+H ++ + L
Sbjct: 124 AEMDVPIYSYTYDGDTAPALRQKIRQAGHIVITNPDMLHTAILPHHTKWISLFEQL---- 179
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
R+VVIDE H Y+G FG H A ++RRL R+C+ YGS P+F+ ++A
Sbjct: 180 ---------------RYVVIDELHTYRGVFGSHVANVIRRLKRICA-FYGSQPTFICTSA 223
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T ANP+E L + LI N+G+P +K V +NP R++ + R +A
Sbjct: 224 TIANPQELAERLTG-EPMTLIDNNGAPRGRKHIVFYNPPVVERTM---------NVRQSA 273
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYR 564
KT+ ++ +++ + + I F RSR EL+LS+ + ++E +I YR
Sbjct: 274 TKTAVELAR------QLLVNRIPTIVFARSRVRTELILSHLQAAVKERIGE--TTIRGYR 325
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
GY+ +RR IE G + GV +TNALELG+D+G + + G+PG+IAS WQQAGR+
Sbjct: 326 GGYLPNERRAIENGLRNGDIIGVVSTNALELGVDIGQLQACILTGYPGTIASTWQQAGRA 385
Query: 625 GRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
GRR SL + VA PLDQY + +PE F E I+ N +L HL CAA E P
Sbjct: 386 GRRHGDSLVIMVASSSPLDQYIVSHPEYFFARSPETARINPDNMLILVDHLKCAAYELPF 445
Query: 685 SLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESE 744
E + G + + L ++G L A + ++ + P+ IS+R+ E
Sbjct: 446 R--RGETFGGIDVEDVLDFLVDQGVLH------ERAGRWHWMS-DAFPAQNISLRSAAQE 496
Query: 745 RYEVIDMQS---NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADL 801
+ID+ + + V+ E++ A ++E A+Y+H+G Y V++L+ K A ++ D+
Sbjct: 497 NVVIIDISNIARHRVIGEMDRFSAMTLLHEEAIYLHEGTQYQVEKLDWEEKKAYVRQVDV 556
Query: 802 KYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIF 861
+YFT + V + + + +A+A + GSG I
Sbjct: 557 EYFTDANLAVQLDVLSNDRSEERGAMAVHYGDVSVRAMATIFKKLKLSTFENI-GSGPI- 614
Query: 862 DTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFS---FRSGLHAASHALLHVVPIYVRCN 918
LP+ + + A W + + V FS F L ++ L H+VPI+V C+
Sbjct: 615 -----RLPEETLHTSAAWFEWKE-----VPSEFSPALFEHLLVGLANVLSHLVPIFVMCD 664
Query: 919 FSD--LAPECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
SD + P+ PH R I LYDR+PGG G+S+ V
Sbjct: 665 RSDVHVVPQLKAPHSGR---PTIFLYDRYPGGVGLSEAV 700
>gi|404258694|ref|ZP_10962012.1| putative ATP-dependent helicase [Gordonia namibiensis NBRC 108229]
gi|403402847|dbj|GAC00422.1| putative ATP-dependent helicase [Gordonia namibiensis NBRC 108229]
Length = 775
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 247/753 (32%), Positives = 386/753 (51%), Gaps = 75/753 (9%)
Query: 217 QGQMVHVEDISARKAVLVE----IPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKN 272
+ + H+ I +R A E +P ALLD A GI +L++HQA + + G +
Sbjct: 22 ESPLTHLSVIPSRPATFAEWPEWVPKALLD----AYADNGIERLWTHQARAADEAFRGNH 77
Query: 273 VVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL---LAMTKAFDA 329
V + T T+SGKSL Y +P+L L ++ +S+ALY+ PTKAL DQ+R++ +A F
Sbjct: 78 VAICTGTASGKSLSYQMPILSTLLNEKNSTALYLAPTKALGADQIRSVSSVIAGRPEF-G 136
Query: 330 SIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVT 389
+ YDGDT + R W R ++R + TNPDMLH+ IL +H ++ +
Sbjct: 137 HLQPCAYDGDTDPEIRQWARVHSRWIFTNPDMLHIGILSHHARWRQF------------- 183
Query: 390 TEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANP 449
F +R++V+DE H Y+G FG HTAL++RRL R+ + G++P+ + ++AT A P
Sbjct: 184 ------FRHLRYIVVDECHHYRGVFGSHTALVMRRLLRI-ARAAGANPTVIGASATVAQP 236
Query: 450 REHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSS 509
E L + + + D SP ++ LW P L +V + N A S
Sbjct: 237 AEALGRLIGEPAVAVTE-DSSPRGERTVALWEP-DFLPAVTGE---------NGAPVRRS 285
Query: 510 PISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVA 569
+E + L A+ V G R + F RSR+ EL R +L ++AP L + YRAGY+A
Sbjct: 286 AGAESARLLADFVVEGARTLCFARSRRGVELTALSARNLLSQSAPELESRVGAYRAGYLA 345
Query: 570 EDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRER 629
+DRR++E+ G+L GVA TNALELG+D+ +D + G+PG++AS WQQAGR+GR+
Sbjct: 346 DDRRKLEKAISDGELLGVATTNALELGVDISGLDAVIVSGYPGTVASFWQQAGRAGRQRE 405
Query: 630 P--SLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLS-- 685
SL V VA + PLD Y + +PE L P+E D N +L HL+CAA E PLS
Sbjct: 406 SGDSLVVLVARDDPLDTYLVHHPESLLGKPVEATVTDPANPYILGPHLLCAAAEKPLSDA 465
Query: 686 --LIYDEKYFGSGLSS-GITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIE 742
+D + L++ G+ + G+ Y+ P I IR
Sbjct: 466 EIDAWDARPVAEDLAAEGLLRKRKSGW---------------YVAAGVEPHAEIDIRGGI 510
Query: 743 SERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLK 802
+ ++D +++VL ++ +A V+ GAV++HQG TYLV EL+L +AL D
Sbjct: 511 GGQVLIVDTTTSQVLGTVDTGRAMSTVHPGAVHIHQGETYLVDELDLDDGLALAHPEDPD 570
Query: 803 YFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFD 862
+ T R+ TDI ++ + I + T + VT G+ R R +G + D
Sbjct: 571 WTTSARETTDISIT-------SVIESREFGPLTVAFVEVDVTHQVVGYLRTLR-TGEVLD 622
Query: 863 TVELYLPKYSYESQAV-WIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSD 921
VEL +P+ + ++AV + P+ + LHAA HA + ++P+ C+ D
Sbjct: 623 AVELDMPEQTLHTRAVMYTLTPEVLAEAGIDETRLPGSLHAAEHAAIGLLPLVATCDRWD 682
Query: 922 LAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
+ + H P + +YD + GG G +++
Sbjct: 683 IGGVSTDLHPDTGLPT-VFVYDGYMGGAGFAER 714
>gi|343926493|ref|ZP_08765998.1| putative ATP-dependent helicase [Gordonia alkanivorans NBRC 16433]
gi|343763731|dbj|GAA12924.1| putative ATP-dependent helicase [Gordonia alkanivorans NBRC 16433]
Length = 775
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 247/753 (32%), Positives = 387/753 (51%), Gaps = 75/753 (9%)
Query: 217 QGQMVHVEDISARKAVLVE----IPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKN 272
+ + H+ I +R A E +P ALLD A GI ++++HQA + + G +
Sbjct: 22 ESPLTHLSVIPSRPASFAEWPEWVPTALLD----AYADNGIERVWTHQARAADEAFRGNH 77
Query: 273 VVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRA---LLAMTKAFDA 329
V + T T+SGKSL Y +P+L L ++ +S+ALY+ PTKAL DQ+RA ++A F
Sbjct: 78 VAICTGTASGKSLSYQMPILSTLLNEKNSTALYLAPTKALGADQIRAVSSIIAGRPEF-G 136
Query: 330 SIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVT 389
+ YDGDT + R W R ++R + TNPDMLH+ IL +H ++ +
Sbjct: 137 HLQPCAYDGDTDPEIRQWARVHSRWIFTNPDMLHIGILSHHARWRQF------------- 183
Query: 390 TEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANP 449
F +RF+V+DE H Y+G FG HTAL++RRL R+ + G++P+ + ++AT A P
Sbjct: 184 ------FRHLRFIVVDECHHYRGVFGSHTALVMRRLLRI-ARAAGANPTVIGASATVAQP 236
Query: 450 REHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSS 509
E L + + + D SP ++ LW P L +V + N A S
Sbjct: 237 AEALGRLIGEPAVAVTE-DSSPRGERTVALWEP-DFLPAVTGE---------NGAPVRRS 285
Query: 510 PISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVA 569
+E + L A+ V G R + F RSR+ EL R +L ++AP L I YRAGY+A
Sbjct: 286 AGAESARLLADFVVEGARTLCFARSRRGVELTALSARNLLSQSAPELESRIGAYRAGYLA 345
Query: 570 EDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRER 629
+DRR++E+ G+L GVA TNALELG+D+ +D + G+PG++AS WQQAGR+GR+
Sbjct: 346 DDRRKLEKAISDGELLGVATTNALELGVDISGLDAVIVSGYPGTVASFWQQAGRAGRQRE 405
Query: 630 P--SLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLI 687
SL V VA + PLD + + +P+ L P+E D N +L HL+CAA E PLS
Sbjct: 406 SGDSLVVLVARDDPLDTFLVHHPDSLLGKPVEATVTDPANPYILGPHLLCAAAEKPLSDT 465
Query: 688 ----YDEKYFGSGLSS-GITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIE 742
+D + L++ G+ + G+ Y+ P I IR
Sbjct: 466 EIDAWDARPVAEDLATEGLLRRRKSGW---------------YVAAGVEPHAEIDIRGGI 510
Query: 743 SERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLK 802
+ ++D +++VL ++ +A V+ GAV++HQG TYLV EL+L +AL D
Sbjct: 511 GGQVLIVDTTTSQVLGTVDTGRAMSTVHPGAVHIHQGETYLVDELDLDDGLALAHPEDPD 570
Query: 803 YFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFD 862
+ T R+ TDI ++ + I + T + VT G+ R R +G + D
Sbjct: 571 WTTSARETTDISIT-------SVIESREFGPLTVAFVEVDVTHQVVGYLRTLR-TGEVLD 622
Query: 863 TVELYLPKYSYESQAV-WIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSD 921
VEL +P+ + ++AV + P+ + + LHAA HA + ++P+ C+ D
Sbjct: 623 AVELDMPEQTLHTRAVMYTLTPEVLAEAGIDDTRLPGSLHAAEHATIGLLPLVATCDRWD 682
Query: 922 LAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
+ + H P + +YD + GG G +++
Sbjct: 683 IGGVSTDLHPDTGLPT-VFVYDGYMGGAGFAER 714
>gi|392399785|ref|YP_006436385.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis Cp162]
gi|390530863|gb|AFM06592.1| DEAD-box ATP dependent DNA helicase [Corynebacterium
pseudotuberculosis Cp162]
Length = 785
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 263/744 (35%), Positives = 376/744 (50%), Gaps = 63/744 (8%)
Query: 221 VHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTS 280
H+E A+ A + P+ + K AL S GI +LY+HQ E + + V+AT TS
Sbjct: 30 THLETTPAKPARYADWPEWVYPPVKEALISRGIQRLYAHQQEVAHNAWEKIDTVIATGTS 89
Query: 281 SGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAM-----TKAFDA--SIDI 333
SGKSL Y LP+L L++D ++ A+Y+ PTKAL DQL A+ A+ T DA S+
Sbjct: 90 SGKSLGYQLPILSCLAYDSTACAIYLTPTKALGSDQLNAVTALLQEAQTLGGDALDSVHP 149
Query: 334 GVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVY 393
YDGDT R +R+ +R + TNPDMLH ILP H +++R+
Sbjct: 150 APYDGDTPSDARSGIREQSRFIFTNPDMLHAGILPNHQRWARL----------------- 192
Query: 394 LIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHC 453
F +RF+VIDE H+Y+G FG +L+LRRL R+ S YGS P+ + ++ATS NP EH
Sbjct: 193 --FRHLRFIVIDECHSYRGVFGAGVSLVLRRLLRIASR-YGSTPTVILASATSNNPAEHA 249
Query: 454 MELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISE 513
EL + + D +P + +LW P L V + + R AA+ SE
Sbjct: 250 -ELLLGRPVYAVTTDSAPTGARTIMLWEP-GFLDGVEGEHGAPV---RRAAS------SE 298
Query: 514 VSYLFAEMVQHGLRCIAFCRSRKLCELV-LSYTREILEETAPHLVDSICVYRAGYVAEDR 572
+ + A ++ G R + F RSR+ EL L E+ P L I YRAGY+AEDR
Sbjct: 299 AASIMATLIAEGARTLTFVRSRRQAELTALRCAEELSYHGRPDLAPRISAYRAGYLAEDR 358
Query: 573 RRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSL 632
RRIE G+L GVA+TNALELGIDVG +D + GFPG++AS WQQAGR+GRR + SL
Sbjct: 359 RRIEEQLDNGQLLGVASTNALELGIDVGGLDAVVTAGFPGTVASFWQQAGRAGRRGQGSL 418
Query: 633 AVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKY 692
VA + P+D Y + +PE L PIE + N +L HL CAALE PLS D +
Sbjct: 419 VTLVARDEPMDTYLVHHPEALLGRPIERTVFNPHNPHILAGHLCCAALEAPLS---DAEI 475
Query: 693 FGSGLSSGITTLKNRGYLS-SDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDM 751
G L+ G L + K E HE ++S R S ++D
Sbjct: 476 NSLGAQQVAERLEREGLLKHRRHGWFAVEKPGEPAAHE-----SVSPRGSGSS-ITIVDE 529
Query: 752 QSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYT 811
VL IE+++A QV+ GAVY+H+G ++++ L+L +AL + T R T
Sbjct: 530 TDGRVLGTIEQTRAVSQVHPGAVYLHRGESFIISSLDLEQHLALAHPDAPDHSTYARSTT 589
Query: 812 DIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKY 871
DI + G + A ++ +L VT G Y + G + D V L +P
Sbjct: 590 DIRILGEVDKVANPAPGLWVS-----SLNVEVTDRVTG-YVVKAPDGSVLDVVPLQMPPQ 643
Query: 872 SYESQAVWIQVPQSVKAVVEQNFSFR---SGLHAASHALLHVVPIYVRCNFSDLAPECPN 928
+ ++A V ++ ++ LHAA HA + ++P+ C+ D+
Sbjct: 644 TLITRA----VAYTIDPLILDQLGITDVPGALHAAEHAAIGILPLIATCDRWDIGGVSTE 699
Query: 929 PHDSRYFPERILLYDRHPGGTGVS 952
H P + +YD HPGG G +
Sbjct: 700 MHPDTGLPT-VFVYDGHPGGAGFT 722
>gi|419859950|ref|ZP_14382597.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
gi|387983623|gb|EIK57092.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
Length = 778
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 251/736 (34%), Positives = 372/736 (50%), Gaps = 60/736 (8%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
H+E+I R A + P + L+ GI++LYSHQA++ + G NVVVAT TSS
Sbjct: 31 HIENIPPRSARYLPWPAWTAPELQQELERRGIAQLYSHQAQAADLAWTGTNVVVATGTSS 90
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFD--ASIDIGVYDGD 339
GKSL Y LP+L A+S D + ALY+ PTKAL DQL ++++ + D A + YDGD
Sbjct: 91 GKSLSYLLPILSAMSQDPQACALYLTPTKALGSDQLAHVMSLVGSTDTLAGVHPAPYDGD 150
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T R +R+ +R + +NPDMLH ILP H +++R F +
Sbjct: 151 TPADARAGIREQSRFVFSNPDMLHAGILPNHQRWARF-------------------FRHL 191
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
RF+VIDE H+Y+G FG AL++RRL RL + YGS P+ + ++ATS +P H L
Sbjct: 192 RFIVIDECHSYRGVFGAGVALVIRRLLRLAAR-YGSTPTVMLASATSNDPAAHASTLIGQ 250
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
+ + + DG+P + +LW P D + N A + +E + + A
Sbjct: 251 PVVAVTE-DGAPTGARTVMLWEP----------GFVDGAEGENGAPIRRAASTESAGIMA 299
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LVDSICVYRAGYVAEDRRRIERD 578
++ G R + F RSR+ E+V E L H + YRAGY+AEDRR +ER
Sbjct: 300 TLIAAGARTLTFVRSRRQAEVVALRCAEELAYHGRHDFASRVAAYRAGYLAEDRRALERK 359
Query: 579 FFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAF 638
G L GVA+TNALELGIDVG +D + G+PG++AS WQQAGR+GRR + SL VA
Sbjct: 360 LDDGTLLGVASTNALELGIDVGGLDAVVTAGYPGTVASFWQQAGRAGRRGQGSLVTLVAR 419
Query: 639 EGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLS 698
+ P+D Y + +PE L P+E D N +L HL CAA E PL+ + ++
Sbjct: 420 DDPMDTYLVHHPEALLGRPMEKIVFDPHNPHILSGHLYCAAAESPLTEAEIDALNAREVA 479
Query: 699 SGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHT-ISIRAIESERYEVIDMQSNEVL 757
L N GYL P+ F + P+H+ +S+R ++D +L
Sbjct: 480 Q---QLANDGYLRHRPT-----GWFAVEQPSQPPAHSLVSLRG-SGHHVAIVDRSDGRLL 530
Query: 758 EEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSG 817
I+ ++A QV+ GAVY+HQG T++++EL+ +A+ + D + F R TDI + G
Sbjct: 531 GTIDSARAASQVHPGAVYLHQGETFVIEELDDQVALAVPDQPDYQTF--ARSTTDIRIVG 588
Query: 818 GNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQA 877
+ ++ L VT G Y + G + V L +P + ++A
Sbjct: 589 EVDKVCNPAPGLWVSN-----LVVEVTDRVVG-YTMKASDGSVLAMVPLQMPPQTLVTRA 642
Query: 878 VWIQVPQSVKAVVEQNFSFR---SGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRY 934
V +V +V + LHAA HA + ++P+ C+ D+ H
Sbjct: 643 ----VAYTVDPLVLDSLGITDVPGALHAAEHAAIGLLPLIATCDRWDIGGVSTAEHPDTG 698
Query: 935 FPERILLYDRHPGGTG 950
P + +YD HPGG G
Sbjct: 699 LPT-VFVYDGHPGGAG 713
>gi|350266394|ref|YP_004877701.1| dead/deah box helicase domain-containing protein [Bacillus subtilis
subsp. spizizenii TU-B-10]
gi|349599281|gb|AEP87069.1| dead/deah box helicase domain protein [Bacillus subtilis subsp.
spizizenii TU-B-10]
Length = 749
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 243/739 (32%), Positives = 400/739 (54%), Gaps = 60/739 (8%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+V+ +I R+A +P+++ K+AL GI +LY+HQ + G+++V T T
Sbjct: 19 VVNWHEIEPREARTRPMPESIDQRIKAALSKRGIDELYTHQFSAFQYVQKGESIVTVTPT 78
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGD 339
+SGK+LCYNLPVL++++ D ++ ALY+FPTKALAQDQ L + I YDGD
Sbjct: 79 ASGKTLCYNLPVLQSIAQDETNRALYLFPTKALAQDQKSELNEIIDEMGIDIKSFTYDGD 138
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T+ R +R ++ITNPDMLH +ILP+H ++ + NL
Sbjct: 139 TSPAIRQKVRKAGHIVITNPDMLHSAILPHHTKWVSLFENL------------------- 179
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
+++VIDE H Y+G FG H A ++RRL R+C YGSDP F+ ++AT ANP+E +L
Sbjct: 180 KYIVIDELHTYRGVFGSHVANVIRRLKRIC-QFYGSDPVFICTSATIANPKELGEQLTG- 237
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
+ L+ ++G+P +K FV +NP ++NK N S +EV+ L
Sbjct: 238 KPMRLVDDNGAPSGRKHFVFYNP-----PIVNK----------PLNIRKSATAEVNELAK 282
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDF 579
E +++ ++ I F RSR E++LS+ +E++++ SI YR GY+ ++RR IER
Sbjct: 283 EFLKNKVQTIVFARSRVRVEIILSHIQELVKKEIG--TKSIRGYRGGYLPKERREIERGL 340
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFE 639
G++ GV +TNALELG+D+G + V + G+PGS+AS WQQAGR+GRR SL + VA
Sbjct: 341 REGEILGVVSTNALELGVDIGQLQVCVMTGYPGSVASAWQQAGRAGRRHGESLIIMVANS 400
Query: 640 GPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSS 699
P+DQY +++PE F E I+ +N +L HL CAA E P DE+ FG S
Sbjct: 401 TPIDQYIVRHPEYFFNRSPESARINPENLIILVDHLKCAAYELPFRA--DEE-FGPMDVS 457
Query: 700 GITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVI---DMQSNEV 756
I YL + L + + + + E P+ IS+R+ E ++ D+ + +
Sbjct: 458 DILE-----YLQEEAVLHRNGERYHW-ASESFPASNISLRSASQENVVIVDQSDIANVRI 511
Query: 757 LEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVS 816
+ E++ A +++ A+Y+H+G Y V++L+ K A +K D++Y YTD +++
Sbjct: 512 IGEMDRFSAMTLLHDEAIYLHEGVQYQVEKLDWDHKKAYVRKVDVEY------YTDANLA 565
Query: 817 GGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQ 876
+K++ ++T+ TV F ++ + + ++LP+ +
Sbjct: 566 VQLKVLEIDKTKEK-SRTSLHYGDVTVNALPTIFKKIKMTTFENIGSGPIHLPEEELHTS 624
Query: 877 AVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFP 936
A W+++ + + + E+ + L S+ L H+VP+Y+ C+ +D+ P
Sbjct: 625 AAWLEIKTADEDIGEK--TLEQLLLGISNVLQHIVPVYIMCDRNDVHVISQIKAAHTGLP 682
Query: 937 ERILLYDRHPGGTGVSKQV 955
I LYD +PGG G++++V
Sbjct: 683 -TIFLYDHYPGGIGLAEEV 700
>gi|376292393|ref|YP_005164067.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae HC02]
gi|372109716|gb|AEX75776.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae HC02]
Length = 778
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 256/767 (33%), Positives = 383/767 (49%), Gaps = 63/767 (8%)
Query: 196 SDKSQLLPLEMVEHLRKGIGSQ---GQMVHVEDISARKAVLVEIPDALLDNTKSALKSTG 252
S S + ++ E L K + + H+E+I R A + P + L+ G
Sbjct: 2 SSSSPFMGYQLGEELAKSVAQRYPNSTCTHIENIPPRSARYLPWPAWTALELQRELERRG 61
Query: 253 ISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKAL 312
I++LYSHQA++ + G NVVVAT TSSGKSL Y LP+L A+S D + ALY+ PTKAL
Sbjct: 62 IAQLYSHQAQAADLAWTGTNVVVATGTSSGKSLSYLLPILSAMSQDPQACALYLTPTKAL 121
Query: 313 AQDQLRALLAMTKAFD--ASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYH 370
DQL ++++ + D A + YDGDT R +R+ +R + +NPDMLH ILP H
Sbjct: 122 GSDQLAHVMSLVGSTDTLAGVHPAPYDGDTPTDARAGIREQSRFVFSNPDMLHAGILPNH 181
Query: 371 GQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCS 430
+++R F +RF+VIDE H+Y+G FG AL++RRL RL +
Sbjct: 182 QRWARF-------------------FRHLRFIVIDECHSYRGVFGAGVALVIRRLLRLAA 222
Query: 431 HVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVL 490
YGS P+ + ++ATS +P H L + + + DG+P + +LW P
Sbjct: 223 R-YGSTPTVMLASATSNDPAAHASTLIGQPVVAVTE-DGAPAGARTVMLWEP-------- 272
Query: 491 NKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILE 550
D + N A + +E + + A ++ G R + F RSR+ E+V E L
Sbjct: 273 --GFVDGAEGENGAPIRRAASTESAGIMATLIAAGARTLTFVRSRRQAEVVALRCAEELA 330
Query: 551 ETAPH-LVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLG 609
H + YRAGY+AEDRR +ER G L GVA+TNALELGIDVG +D + G
Sbjct: 331 YHGRHDFASRVAAYRAGYLAEDRRALERKLDDGTLLGVASTNALELGIDVGGLDAVVTAG 390
Query: 610 FPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHK 669
+PG++AS WQQAGR+GRR + SL VA + P+D Y + +PE L P+E D N
Sbjct: 391 YPGTVASFWQQAGRAGRRGQGSLVTLVARDDPMDTYLVHHPEALLGRPMEKIVFDPHNPH 450
Query: 670 VLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHE 729
+L HL CAA E PL+ + ++ L N GYL P+ F
Sbjct: 451 ILSGHLYCAAAESPLTEAEIDALNAREVAQ---QLANDGYLRHRPT-----GWFAVEQPG 502
Query: 730 KMPSHT-ISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELN 788
+ P+H+ +S+R ++D +L I+ ++A QV+ GAVY+HQG T++++EL+
Sbjct: 503 QPPAHSLVSLRG-SGHHVAIVDRSDGRLLGTIDSARAASQVHPGAVYLHQGETFVIEELD 561
Query: 789 LSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWF 848
+A+ + D + F R TDI + G + ++ L VT
Sbjct: 562 DQVALAVPDQPDYQTF--ARSTTDIRIVGEVDKVCNPAPGLWVSN-----LVVEVTDRVV 614
Query: 849 GFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFR---SGLHAASH 905
G Y + G + V L +P + ++A V +V +V + LHAA H
Sbjct: 615 G-YTMKASDGSVLAMVPLQMPPQTLVTRA----VAYTVDPLVLDSLGITDVPGALHAAEH 669
Query: 906 ALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVS 952
A + ++P+ C+ D+ H P + +YD HPGG G +
Sbjct: 670 AAIGLLPLIATCDRWDIGGVSTAEHPDTGLPT-VFVYDGHPGGAGFA 715
>gi|376286796|ref|YP_005159362.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae BH8]
gi|371584130|gb|AEX47795.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae BH8]
Length = 778
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 251/738 (34%), Positives = 372/738 (50%), Gaps = 60/738 (8%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
H+E+I R A + P + L+ GI++LYSHQA++ + G NVVVAT TSS
Sbjct: 31 HIENIPPRSARYLPWPAWTAPELQQELERRGIAQLYSHQAQAADLAWTGTNVVVATGTSS 90
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDA--SIDIGVYDGD 339
GKSL Y LP+L A+S D +SALY+ PTKAL DQL ++++ D + YDGD
Sbjct: 91 GKSLSYLLPILSAMSQDPQTSALYLTPTKALGSDQLAHVMSLVGNVDTLTGVHPAPYDGD 150
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T R +R+ +R + +NPDMLH ILP H +++R F +
Sbjct: 151 TPTDARAGIREQSRFVFSNPDMLHAGILPNHQRWARF-------------------FRHL 191
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
RF+VIDE H+Y+G FG AL++RRL RL + YGS P+ + ++ATS +P H L
Sbjct: 192 RFIVIDECHSYRGVFGAGVALVIRRLLRLAAR-YGSTPTVMLASATSNDPAAHASTLIGQ 250
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
+ + + DG+P + +LW P D + N A + +E + + A
Sbjct: 251 PVVAVTE-DGAPAGARTVMLWEP----------GFVDGAEGENGAPIRRAASTESAGIMA 299
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LVDSICVYRAGYVAEDRRRIERD 578
++ G R + F RSR+ E+V E L H + YRAGY+AEDRR +ER
Sbjct: 300 TLIAAGARTLTFVRSRRQAEVVALRCAEELAYHGRHDFASRVAAYRAGYLAEDRRALERK 359
Query: 579 FFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAF 638
G L GVA+TNALELGIDVG +D + G+PG++AS WQQAGR+GRR + SL VA
Sbjct: 360 LDDGTLLGVASTNALELGIDVGGLDAVVTAGYPGTVASFWQQAGRAGRRGQGSLVTLVAR 419
Query: 639 EGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLS 698
+ P+D Y + +PE L P+E D N +L HL CAA E PL+ + ++
Sbjct: 420 DDPMDTYLVHHPEALLGRPMEKIVFDPHNPHILSGHLYCAAAESPLTEAEIDALNAREVA 479
Query: 699 SGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHT-ISIRAIESERYEVIDMQSNEVL 757
L N GYL P+ F + P+H+ +S+R ++D +L
Sbjct: 480 Q---QLANDGYLRHRPT-----GWFAVEQPGQPPAHSLVSLRG-SGHHVAIVDRSDGRLL 530
Query: 758 EEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSG 817
I+ ++A QV+ GAVY+HQG T++++EL+ +A+ + D + F R TDI + G
Sbjct: 531 GTIDSARAASQVHPGAVYLHQGETFVIEELDDQVALAVPDQPDYQTF--ARSTTDIRIVG 588
Query: 818 GNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQA 877
+ ++ L VT G Y + G + V L +P + ++A
Sbjct: 589 EVDKVCNPAPGLWVSN-----LVVEVTDRVVG-YTMKASDGSVLAMVPLQMPPQTLVTRA 642
Query: 878 VWIQVPQSVKAVVEQNFSFR---SGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRY 934
V +V +V + LHAA HA + ++P+ C+ D+ H
Sbjct: 643 ----VAYTVDPLVLDSLGITDVPGALHAAEHAAIGLLPLIATCDRWDIGGVSTAEHPDTG 698
Query: 935 FPERILLYDRHPGGTGVS 952
P + +YD HPGG G +
Sbjct: 699 LPT-VFVYDGHPGGAGFA 715
>gi|315501233|ref|YP_004080120.1| hypothetical protein ML5_0417 [Micromonospora sp. L5]
gi|315407852|gb|ADU05969.1| Protein of unknown function DUF1998 [Micromonospora sp. L5]
Length = 825
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 258/739 (34%), Positives = 371/739 (50%), Gaps = 56/739 (7%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+ HVE + AR V P + ++A G++ + HQAE+ + AG++VVVAT T
Sbjct: 28 VTHVERVPARAGEPVGWPGWAPEELRAAFARRGVTAPWRHQAEAAELAYAGRHVVVATGT 87
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGD 339
+SGKSL Y LP L L D ++ LY+ PTKALA DQLRA+ + D + YDGD
Sbjct: 88 ASGKSLAYQLPALSTLLADPRATVLYLAPTKALAADQLRAVAGLE--LD-GVRPATYDGD 144
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T + +R W+R ++R ++TNPDMLH ILP H +S L L
Sbjct: 145 TPRAEREWIRRHSRFVLTNPDMLHHGILPGHAHWSGFLRRLA------------------ 186
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
+VV+DE H Y+G FG H A +LRRL R C+ +G P F+ ++ATS +P L L
Sbjct: 187 -YVVVDECHTYRGVFGSHVAHVLRRLRRQCAR-FGRTPVFLLASATSGDPATAAGRLTGL 244
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
+ + D SP F LW P L + D+ R +A + E + L A
Sbjct: 245 P-VTAVTEDTSPRGGVTFALWEP-PLLPPTESSVDADLVQVRRSA------LRETADLLA 296
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDF 579
+ V G+R +AF RSR+ E+V + R L+E P L D + YRAGY+ E+RR +ER
Sbjct: 297 DSVVEGVRTLAFVRSRRGAEVVAANARRSLDEAVPGLGDRVAAYRAGYLREERRELERAL 356
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFE 639
G L G+A+TNALELG+D+ +D L G+PG+ ASLWQQAGR+GR +LAV VA +
Sbjct: 357 LHGDLLGLASTNALELGVDLVGLDAVLICGWPGTRASLWQQAGRAGRSGDEALAVLVARD 416
Query: 640 GPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSS 699
PLD Y + +PE LF P+E +D N VL L CAA E PL+ D FG G
Sbjct: 417 DPLDTYLVHHPEALFGRPVEATVLDPANPYVLAPQLACAAHESPLTPA-DLDLFGEGAKE 475
Query: 700 GITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEE 759
+ +L G L P+ Y H + P + +R V++ + +L
Sbjct: 476 AVDSLVEAGALRQRPT-------GWYWRHRERPE--VDLRGEGGAPVCVVEESTGRLLGT 526
Query: 760 IEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGN 819
++ A F ++ GAVY+HQG +Y+V L+L+ AL + + T RD T + V
Sbjct: 527 VDGGSAHFLLHTGAVYLHQGVSYVVDSLDLTDGCALVHAEEPDWSTHARDVTSLSV---- 582
Query: 820 NAYATKISKDQLTKTTAQAL---ACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQ 876
+S L VT+ + R +G + DT L LP +
Sbjct: 583 ------VSVRSYVDAGPVGLFLGEVDVTSQVVSYQRRRIATGEVIDTRPLDLPARELRTV 636
Query: 877 AVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYF 935
AVW + P+S+ A + LHAA HA + ++P+ C+ D+ H
Sbjct: 637 AVWFTLSPESLTAAGVEAADVPGALHAAEHAAIGLLPLMATCDRWDIGGLSTALHPDTEA 696
Query: 936 PERILLYDRHPGGTGVSKQ 954
P + +YD HPGG G +++
Sbjct: 697 PT-VFVYDGHPGGAGFAER 714
>gi|386758800|ref|YP_006232016.1| DEAD/DEAH box helicase [Bacillus sp. JS]
gi|384932082|gb|AFI28760.1| DEAD/DEAH box helicase [Bacillus sp. JS]
Length = 749
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 242/739 (32%), Positives = 399/739 (53%), Gaps = 60/739 (8%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+V+ +I R+A +P+++ + K+AL GI +LY+HQ + G+++V T T
Sbjct: 19 VVNWHEIEPREAKTRPMPESIDERIKAALSKRGIDELYTHQYSAFQYVQKGESIVTVTPT 78
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGD 339
+SGK+LCYNLPVL++++ D ++ ALY+FPTKALAQDQ L + I YDGD
Sbjct: 79 ASGKTLCYNLPVLQSIAQDETNRALYLFPTKALAQDQKSELNEIIDEMGIDIKSFTYDGD 138
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T+ R +R ++ITNPDMLH +ILP+H ++ + NL
Sbjct: 139 TSPAIRQKVRKAGHIVITNPDMLHSAILPHHTKWVSLFENL------------------- 179
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
+++VIDE H Y+G FG H A ++RRL R+C YGSDP F+ ++AT ANP+E +L
Sbjct: 180 KYIVIDELHTYRGVFGSHVANVIRRLKRIC-RFYGSDPVFICTSATIANPKELGEQLTG- 237
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
+ L+ ++G+P +K FV +NP ++NK N S +EV+ L
Sbjct: 238 KPMRLVDDNGAPSGRKHFVFYNP-----PIVNK----------PLNIRKSATAEVNELAK 282
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDF 579
E +++ ++ I F RSR E++LS+ E++++ SI YR GY+ ++RR IER
Sbjct: 283 EFLKNKVQTIVFARSRVRVEIILSHIHELVKKEIG--TKSIRGYRGGYLPKERREIERGL 340
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFE 639
G + GV +TNALELG+D+G + V + G+PGS+AS WQQAGR+GRR SL + VA
Sbjct: 341 REGDILGVVSTNALELGVDIGQLQVCVMTGYPGSVASAWQQAGRAGRRHGESLIIMVANS 400
Query: 640 GPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSS 699
P+DQY +++PE F E I+ +N +L HL CAA E P DE+ FG S
Sbjct: 401 TPIDQYIVRHPEYFFNRSPESARINPENLIILVDHLKCAAYELPFRA--DEE-FGPMDVS 457
Query: 700 GITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVI---DMQSNEV 756
I YL + L + + + + E P+ IS+R+ E ++ D+ + +
Sbjct: 458 DILE-----YLQEEAVLHRNGERYHW-ASESFPASNISLRSASQENVVIVDQSDIANVRI 511
Query: 757 LEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVS 816
+ E++ A +++ A+Y+H+G Y V++L+ K A +K D++Y YTD +++
Sbjct: 512 IGEMDRFSAMTLLHDEAIYLHEGVQYQVEKLDWDHKKAYVRKVDVEY------YTDANLA 565
Query: 817 GGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQ 876
+K++ ++T+ TV F ++ + + ++LP+ +
Sbjct: 566 VQLKVLEIDQTKEK-SRTSLHYGDVTVNALPTIFKKIKMTTFENIGSGPIHLPEEELHTS 624
Query: 877 AVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFP 936
A W+++ + + + E+ + L ++ L H+VP+Y+ C+ +D+ P
Sbjct: 625 AAWLEIKTADEDIAEK--TLEQLLLGITNVLQHIVPVYIMCDRNDVHVVSQIKAAHTGLP 682
Query: 937 ERILLYDRHPGGTGVSKQV 955
I LYD +PGG G++++V
Sbjct: 683 -TIFLYDHYPGGIGLAEEV 700
>gi|262200586|ref|YP_003271794.1| DEAD/DEAH box helicase [Gordonia bronchialis DSM 43247]
gi|262083933|gb|ACY19901.1| DEAD/DEAH box helicase domain protein [Gordonia bronchialis DSM
43247]
Length = 775
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 249/740 (33%), Positives = 379/740 (51%), Gaps = 55/740 (7%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+ H+E I + + P+ L A + GI + ++HQ + A+ G++VV+ T T
Sbjct: 25 ITHIEVIPSAPPSFDDWPEWLPPALIDAFGADGIQRPWTHQVSAACAARRGEHVVICTGT 84
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFD--ASIDIGVYD 337
+SGKSL Y +P+L L D S+ALY+ PTKAL DQ+R++ A+ + + + YD
Sbjct: 85 ASGKSLAYQMPILTELLTDPHSTALYLSPTKALGADQIRSVSALIAGREEYSHLQPCAYD 144
Query: 338 GDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFL 397
GDT + R W R ++R + TNPDMLH+ IL H ++ + F
Sbjct: 145 GDTDPEIRQWARAHSRWIFTNPDMLHIGILSGHARWRQF-------------------FR 185
Query: 398 FIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELA 457
+R++VIDE H Y+G FG HT+L++RRL R+ + G++ + + ++AT A+P E L
Sbjct: 186 HLRYIVIDECHHYRGVFGAHTSLVMRRLLRI-ARAAGAEVTVIAASATVADPAESLSRLI 244
Query: 458 NLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYL 517
+ + Q DGSP ++ LW P L +V + N A S SE + L
Sbjct: 245 GEPAVAVTQ-DGSPRGERTVALWEP-DFLPAVTGE---------NGAPVRRSAGSESARL 293
Query: 518 FAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIER 577
A+ V G R + F RSR+ EL +L E+AP LVD + YRAGY+AEDRRR+E+
Sbjct: 294 LADFVVEGARTLCFARSRRGVELTALGAARLLAESAPQLVDRVAAYRAGYLAEDRRRLEQ 353
Query: 578 DFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERP--SLAVY 635
G L GVA TNALELG+D+ +D + G+PG++AS WQQAGR+GR+ SL V
Sbjct: 354 AINDGSLVGVATTNALELGVDISGLDAVIVSGYPGTVASFWQQAGRAGRQRESGDSLVVL 413
Query: 636 VAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGS 695
VA + PLD Y + +P L P+E D N VL HL+CAA E PLS D++
Sbjct: 414 VARDDPLDTYLVHHPAALLGKPVEATVFDPGNPYVLGPHLLCAAAEIPLS---DKEIDAW 470
Query: 696 GLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNE 755
G S L G L K Y+ P I IR + ++D +++
Sbjct: 471 GASEVAAELAADGLLRRR-------KAGWYVTPGVEPHADIDIRGGIGGQVLIVDTTTSQ 523
Query: 756 VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHV 815
+L ++ +A V+ GAV++HQG TYL+ EL+L +AL + + T RD TD+ +
Sbjct: 524 LLGTVDSGRAPGTVHPGAVHIHQGRTYLIDELDLDDGLALAHPEEPDWTTSARDITDVSI 583
Query: 816 SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYES 875
I + T + VT G+ R SG + D VEL +P+ + +
Sbjct: 584 -------IRVIESEVYGPLTVALVEVDVTHQVVGYLRTLY-SGEVLDAVELDMPRQTLHT 635
Query: 876 QAV-WIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRY 934
+AV + P+S+++ LHAA HA + ++P+ C+ +D+ + H
Sbjct: 636 RAVMYTLTPESLESAGIDATRLPGSLHAAEHAAIGLLPLVATCDRADIGGLSTDLHPDTG 695
Query: 935 FPERILLYDRHPGGTGVSKQ 954
P + +YD + GG G + +
Sbjct: 696 LPT-VFVYDGYLGGAGFADR 714
>gi|376241973|ref|YP_005132825.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae CDCE 8392]
gi|372105215|gb|AEX71277.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae CDCE 8392]
Length = 778
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 251/738 (34%), Positives = 373/738 (50%), Gaps = 60/738 (8%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
H+E+I R A + P + L+ GI++LYSHQA++ + G NVVVAT TSS
Sbjct: 31 HIENIPPRSARYLPWPAWTAPELQQELERRGIAQLYSHQAQAADLAWTGTNVVVATGTSS 90
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFD--ASIDIGVYDGD 339
GKSL Y LP+L A+S D + ALY+ PTKAL DQL ++++ + D A + YDGD
Sbjct: 91 GKSLSYLLPILSAMSQDPQACALYLTPTKALGSDQLAHVMSLVGSTDTLAGVHPAPYDGD 150
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T R +R+ +R + +NPDMLH ILP H +++R F +
Sbjct: 151 TPADARAGIREQSRFVFSNPDMLHAGILPNHQRWARF-------------------FRHL 191
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
RF+VIDE H+Y+G FG AL++RRL RL + YGS P+ + ++ATS +P H L
Sbjct: 192 RFIVIDECHSYRGVFGAGVALVIRRLLRLAAR-YGSTPTVMLASATSNDPAAHASTLIGQ 250
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
+ + + DG+P + +LW P D + N A + +E + + A
Sbjct: 251 PVVAVTE-DGAPTGARTVMLWEP----------GFVDGAEGENGAPIRRAASTESAGIMA 299
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LVDSICVYRAGYVAEDRRRIERD 578
++ G R + F RSR+ E+V E L H + YRAGY+AEDRR +ER
Sbjct: 300 TLIAAGARTLTFVRSRRQAEVVALRCAEELAYHGRHDFASRVAAYRAGYLAEDRRALERK 359
Query: 579 FFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAF 638
G L GVA+TNALELGIDVG +D + G+PG++AS WQQAGR+GRR + SL VA
Sbjct: 360 LDDGTLLGVASTNALELGIDVGGLDAVVTAGYPGTVASFWQQAGRAGRRGQGSLVTLVAR 419
Query: 639 EGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLS 698
+ P+D Y + +PE L P+E D N +L HL CAA E PL+ + ++
Sbjct: 420 DDPMDTYLVHHPEALLGRPMEKIVFDPHNPHILSGHLYCAAAESPLTEAEIDALNARKVA 479
Query: 699 SGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHT-ISIRAIESERYEVIDMQSNEVL 757
L N GYL P+ F + P+H+ +S+R ++D +L
Sbjct: 480 Q---QLANDGYLRHRPT-----GWFAVEQPGQPPAHSLVSLRG-SGHHVAIVDRSDGRLL 530
Query: 758 EEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSG 817
I+ ++A QV+ GAVY+HQG T++++EL+ +A+ + D + F R TDI + G
Sbjct: 531 GTIDSARAASQVHPGAVYLHQGETFVIEELDDQVALAVPDQPDYQTF--ARSTTDIRIVG 588
Query: 818 GNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQA 877
+ ++ L VT G Y + G + V L +P + ++A
Sbjct: 589 EVDKVCNPAPGLWVSN-----LVVEVTDRVVG-YTMKASDGSVLAMVPLQMPPQTLVTRA 642
Query: 878 VWIQVPQSVKAVVEQNFSFR---SGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRY 934
V +V +V + LHAA HA + ++P+ C+ D+ H
Sbjct: 643 ----VAYTVDPLVLDSLGITDVPGALHAAEHAAIGLLPLIATCDRWDIGGVSTAEHPDTG 698
Query: 935 FPERILLYDRHPGGTGVS 952
P + +YD HPGG G +
Sbjct: 699 LPT-VFVYDGHPGGAGFA 715
>gi|451943086|ref|YP_007463722.1| DEAD/DEAH box helicase [Corynebacterium halotolerans YIM 70093 =
DSM 44683]
gi|451902473|gb|AGF71360.1| DEAD/DEAH box helicase [Corynebacterium halotolerans YIM 70093 =
DSM 44683]
Length = 788
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 251/740 (33%), Positives = 375/740 (50%), Gaps = 55/740 (7%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
+ AR AV + P + + L T I+ YSHQAE + ++VVVAT TSSGKSL
Sbjct: 30 LDARPAVHADWPAWVHPQLRDFLTETQITLPYSHQAECAQLARENRDVVVATGTSSGKSL 89
Query: 286 CYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDA--SIDIGVYDGDTTQK 343
Y LP+L AL+ D + A+Y+ PTKAL DQL A+ +T+ + YDGDT +
Sbjct: 90 GYQLPILTALAEDPRTCAMYLTPTKALGSDQLAAVSRLTREVSGLDGVHPAPYDGDTPTE 149
Query: 344 DRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVV 403
R +R++ R + TNPDMLH+S+L +H +++R+L +LR ++V
Sbjct: 150 ARAGIRESTRFVFTNPDMLHVSVLAHHQRWARLLRHLR-------------------YIV 190
Query: 404 IDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLE 463
+DE H+Y+G FG + AL+LRRL R+ +H YG++P+ + ++AT+A+P EH L +
Sbjct: 191 VDECHSYRGVFGANVALVLRRLLRIAAH-YGAEPTVILASATAADPAEHAANLIG-RPVT 248
Query: 464 LIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQ 523
+ +DG+P + LW P L V + N A + +E + + A +V
Sbjct: 249 AVTDDGAPTGARTVALWEP-GFLEGV---------EGENGAPVRRAATTEAAEIMATLVA 298
Query: 524 HGLRCIAFCRSRKLCELVLSYTREILEETA-PHLVDSICVYRAGYVAEDRRRIERDFFGG 582
G R + F RSR+ E V + E L P I YRAGY+AEDRRR+ER G
Sbjct: 299 EGARTLTFVRSRRAAETVAMRSAEELSGLGRPDFARRIASYRAGYLAEDRRRLERLLDDG 358
Query: 583 KLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPL 642
L GVA TNALELGIDVG +D + GFPG++AS WQQAGR+GRR + SL + VA + P+
Sbjct: 359 TLLGVATTNALELGIDVGGLDAVVTAGFPGTVASFWQQAGRAGRRGQGSLVMLVARDEPM 418
Query: 643 DQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSG------ 696
D Y + +P L P+E + +N VL H+ CAA+E PLS D +G
Sbjct: 419 DTYLVHHPGALLGRPVERSVFNPRNPYVLRGHVYCAAVEKPLSEA-DVDALDAGAVVAEL 477
Query: 697 LSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHT-ISIRAIESERYEVIDMQSNE 755
+G+ + RG+ + D E +H+ +S+R ++D
Sbjct: 478 AEAGLLRRRPRGWFAVPRPGDDGLPTPET-------AHSAVSLRGGAGTEVMIVDATDGR 530
Query: 756 VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHV 815
+L ++ +A QV+ GAVY+HQG ++++ EL+L +AL +Y T R TDI +
Sbjct: 531 LLGTVDAGRAAAQVHPGAVYLHQGESFVIDELDLDDHVALAHPETPEYTTFARSETDIRI 590
Query: 816 SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYES 875
L L VT G Y + G D V L +P+ +
Sbjct: 591 LAEPGEGGLVHPSPGLWVAN---LEVEVTDRVTG-YIVKLADGTTADMVPLDMPEQRLVT 646
Query: 876 QAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRY 934
+AV + P ++ A+ LHAA HA + ++P+ C+ D+ H
Sbjct: 647 RAVAYTIDPAALTAMGIAAADTPGTLHAAEHAAIGLLPLLATCDRWDIGGVSTALHADTG 706
Query: 935 FPERILLYDRHPGGTGVSKQ 954
P + +YD HPGG G + +
Sbjct: 707 LPT-VFVYDGHPGGAGFADE 725
>gi|409356787|ref|ZP_11235174.1| hypothetical protein Dali7_03023 [Dietzia alimentaria 72]
Length = 778
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 248/742 (33%), Positives = 375/742 (50%), Gaps = 56/742 (7%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+ H D+ AR A E P L S L+ G+ + ++HQ + + AG++VVVAT T
Sbjct: 23 LTHAVDLPARDARYSEWPAWSLPGLVSELRDRGVDRPWAHQVATAEHAHAGRHVVVATGT 82
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFD--ASIDIGVYD 337
+SGKSL Y LP L AL+ D + LY+ PTKAL QDQL +++++ A A + YD
Sbjct: 83 ASGKSLGYQLPALSALAEDRNGCVLYLSPTKALGQDQLSSVVSLVDAVPELAHVAPASYD 142
Query: 338 GDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFL 397
GDT R W+R+N+R ++TNPDMLH+S+L Q++R+L LR
Sbjct: 143 GDTPTDARRWIRENSRWIVTNPDMLHLSLLGRSRQWTRLLRGLR---------------- 186
Query: 398 FIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELA 457
FVV+DE H+Y+G FG + AL+LRRL RL + G+ P+FV ++AT+++ L
Sbjct: 187 ---FVVVDECHSYRGVFGSNVALVLRRLDRL-ARAMGASPTFVLASATTSDAGAAATTLV 242
Query: 458 NLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYL 517
+E + +D SP + LW P + A + +P+ E S L
Sbjct: 243 GRECVE-VTDDASPQGGRTVALWEP---------PLMDGLTGENGAPVRRPAPV-EASGL 291
Query: 518 FAEMVQHGLRCIAFCRSRKLCELVLSYTREIL----EETAPHLVDSICVYRAGYVAEDRR 573
A +V G R + F RSR E RE L L I YRAGY+AEDRR
Sbjct: 292 MASLVAEGARTLTFVRSRAGAESTALRAREQLMSDHGSRGRELAGKIAAYRAGYLAEDRR 351
Query: 574 RIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLA 633
R+ER G L GVA+T+ALELG+D+ +D + GFPG+IAS WQQAGR+GRR + +L
Sbjct: 352 RLERGLAEGALVGVASTSALELGVDISGLDAVVSAGFPGTIASFWQQAGRAGRRGQGALV 411
Query: 634 VYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYF 693
+ VA + PLD Y + +PE L P+E D +N +L L CA E P+S ++
Sbjct: 412 MLVARDDPLDTYLVHHPEALLGRPVEATVTDPRNPILLAGQLRCAVSERPMSHAEAAEW- 470
Query: 694 GSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQS 753
G ++ + L + G + P+ + + P + IR ++D
Sbjct: 471 --GATAVLEKLDDDGLVRRRPA------GWYPAADDHTPHAEVDIRGAGGAEVVIVDAVD 522
Query: 754 NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDI 813
+L I+ +A QV+ GA+Y+HQG +++V EL+L +ALC ++ T R+ I
Sbjct: 523 GRMLGTIDSVRARSQVHPGALYLHQGESFVVDELDLEEGLALCHPETPEWTTSAREQVTI 582
Query: 814 HVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSY 873
+ + +T + A+ VTT G+ R RG G I D L LP +
Sbjct: 583 DLI----ESLESVPAGPVTLSFAE---VEVTTRVTGYQRRLRG-GEILDVPPLDLPPTTL 634
Query: 874 ESQA-VWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDS 932
++A V+ PQ ++ + + LHAA HA + ++P+ C+ D+ H
Sbjct: 635 ATRAVVYTLTPQLLRVAGLEEADWPGALHAAEHAAIGLLPLVATCDRWDIGGVSTALHAD 694
Query: 933 RYFPERILLYDRHPGGTGVSKQ 954
P + +YD + GG G +++
Sbjct: 695 TGLPT-VFVYDGYAGGAGFAER 715
>gi|300857640|ref|YP_003782623.1| hypothetical protein cpfrc_00223 [Corynebacterium
pseudotuberculosis FRC41]
gi|375287806|ref|YP_005122347.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis 3/99-5]
gi|383313411|ref|YP_005374266.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis P54B96]
gi|384505918|ref|YP_005682587.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis C231]
gi|384508009|ref|YP_005684677.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis I19]
gi|384510104|ref|YP_005689682.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis PAT10]
gi|385806673|ref|YP_005843070.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis 267]
gi|387135775|ref|YP_005691755.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis 42/02-A]
gi|300685094|gb|ADK28016.1| hypothetical protein cpfrc_00223 [Corynebacterium
pseudotuberculosis FRC41]
gi|302205378|gb|ADL09720.1| DEAD-box ATP dependent DNA helicase [Corynebacterium
pseudotuberculosis C231]
gi|308275616|gb|ADO25515.1| DEAD-box ATP dependent DNA helicase [Corynebacterium
pseudotuberculosis I19]
gi|341824043|gb|AEK91564.1| DEAD-box ATP dependent DNA helicase [Corynebacterium
pseudotuberculosis PAT10]
gi|348606220|gb|AEP69493.1| DEAD-box ATP dependent DNA helicase [Corynebacterium
pseudotuberculosis 42/02-A]
gi|371575095|gb|AEX38698.1| DEAD-box ATP dependent DNA helicase [Corynebacterium
pseudotuberculosis 3/99-5]
gi|380868912|gb|AFF21386.1| DEAD-box ATP dependent DNA helicase [Corynebacterium
pseudotuberculosis P54B96]
gi|383804066|gb|AFH51145.1| DEAD-box ATP dependent DNA helicase [Corynebacterium
pseudotuberculosis 267]
Length = 785
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 263/744 (35%), Positives = 375/744 (50%), Gaps = 63/744 (8%)
Query: 221 VHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTS 280
H+E A+ A + P+ + K AL S GI +LY+HQ E + + V+AT TS
Sbjct: 30 THLETTPAKPARYADWPEWVYPPVKEALISRGIQRLYAHQQEVAHNAWEKIDTVIATGTS 89
Query: 281 SGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAM-----TKAFDA--SIDI 333
SGKSL Y LP+L L++D ++ A+Y+ PTKAL DQL A+ A+ T DA S+
Sbjct: 90 SGKSLGYQLPILSCLAYDSTACAIYLTPTKALGSDQLNAVTALLQEAQTLGGDALDSVHP 149
Query: 334 GVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVY 393
YDGDT R +R+ +R + TNPDMLH ILP H +++R+
Sbjct: 150 APYDGDTPSDARSGIREQSRFIFTNPDMLHAGILPNHQRWARL----------------- 192
Query: 394 LIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHC 453
F +RF+VIDE H+Y+G FG +L+LRRL R+ S YGS P+ + ++ATS NP EH
Sbjct: 193 --FRHLRFIVIDECHSYRGVFGAGVSLVLRRLLRIASR-YGSTPTVILASATSNNPAEHA 249
Query: 454 MELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISE 513
EL + + D +P + +LW P L V + + R AA+ SE
Sbjct: 250 -ELLLGRPVCAVTTDSAPTGARTIMLWEP-GFLDGVEGEHGAPV---RRAAS------SE 298
Query: 514 VSYLFAEMVQHGLRCIAFCRSRKLCELV-LSYTREILEETAPHLVDSICVYRAGYVAEDR 572
+ + A ++ G R + F RSR+ EL L E+ P L I YRAGY+AEDR
Sbjct: 299 AASIMATLIAEGARTLTFVRSRRQAELTALRCAEELSYHGRPDLAPRISAYRAGYLAEDR 358
Query: 573 RRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSL 632
RRIE G+L GVA+TNALELGIDVG +D + GFPG++AS WQQAGR+GRR + SL
Sbjct: 359 RRIEEQLDNGQLLGVASTNALELGIDVGGLDAVVTAGFPGTVASFWQQAGRAGRRGQGSL 418
Query: 633 AVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKY 692
VA + P+D Y + +PE L PIE + N +L HL CAALE PLS D +
Sbjct: 419 VTLVARDEPMDTYLVHHPEALLGRPIERTVFNPHNPHILAGHLCCAALEAPLS---DAEI 475
Query: 693 FGSGLSSGITTLKNRGYLS-SDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDM 751
G L+ G L + K E HE +S+R S ++D
Sbjct: 476 NSLGAQQVAERLEREGLLKHRRHGWFAVEKPGEPSAHE-----LVSLRGSGSA-ITIVDE 529
Query: 752 QSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYT 811
VL IE+++A QV+ GAVY+H+G ++++ L+L +AL + T R T
Sbjct: 530 TDGRVLGTIEQTRAVSQVHPGAVYLHRGESFIISSLDLEQHLALAHPDAPDHSTYARSTT 589
Query: 812 DIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKY 871
DI + G + A ++ L VT G Y + G + D V L +P
Sbjct: 590 DIRILGEVDKVANPAPGLWVSN-----LNVEVTDRVTG-YVVKAPDGSVLDVVSLQMPPQ 643
Query: 872 SYESQAVWIQVPQSVKAVVEQNFSFR---SGLHAASHALLHVVPIYVRCNFSDLAPECPN 928
+ ++A V ++ ++ LHAA HA + ++P+ C+ D+
Sbjct: 644 TLITRA----VAYTIDPLILDQLGITDVPGALHAAEHAAIGILPLIATCDRWDIGGVSTE 699
Query: 929 PHDSRYFPERILLYDRHPGGTGVS 952
H P + +YD HPGG G +
Sbjct: 700 MHPDTGLPT-VFVYDGHPGGAGFT 722
>gi|156847721|ref|XP_001646744.1| hypothetical protein Kpol_1023p55 [Vanderwaltozyma polyspora DSM
70294]
gi|156117424|gb|EDO18886.1| hypothetical protein Kpol_1023p55 [Vanderwaltozyma polyspora DSM
70294]
Length = 1077
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 252/721 (34%), Positives = 383/721 (53%), Gaps = 75/721 (10%)
Query: 255 KLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQ 314
+ YSHQA+++ A G+NV++ T TSSGKSL Y L ++ L +S+ +Y+FPTKALAQ
Sbjct: 290 RFYSHQADAVNAIHHGQNVIITTSTSSGKSLIYQLTAIDLLLKKPNSTFMYIFPTKALAQ 349
Query: 315 DQLRALLAMTKAFD--ASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQ 372
DQ RA + ++I + YDGDT Q R +R NAR++ TNPDM+H SILP H
Sbjct: 350 DQKRAFEKLLSKIPELSNIVVDTYDGDTEQNLRTHIRKNARVIFTNPDMIHTSILPNHPN 409
Query: 373 FSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHV 432
+ L NL+L VV+DE H YK FG H AL+LRRL RLC
Sbjct: 410 WRFFLYNLKL-------------------VVVDELHIYKSLFGSHVALVLRRLRRLCIDY 450
Query: 433 YGS-DPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLN 491
Y + F+ +AT P H + + + LI DGSP K V+WN + V
Sbjct: 451 YDNMSIQFISCSATLKEPITHMKNIFGIDQVTLINEDGSPRGAKHLVIWNTPVLSQHV-- 508
Query: 492 KSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEE 551
K + I E + + ++V + +R IAFC R++CEL++ R I E
Sbjct: 509 -------------KKRENFIGESAKILVQLVLNNVRTIAFCFVRRVCELLMREVRSIFIE 555
Query: 552 TA-PHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGF 610
L+ + YR GY A DRR+IER+ F G L V +TNALELGID+G++D L GF
Sbjct: 556 MGREDLITEVMSYRGGYSASDRRKIEREMFHGNLRAVISTNALELGIDIGNLDAVLMCGF 615
Query: 611 PGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLF--KSP--IECCHIDAQ 666
P S+A+ QQ+GR+GRR + S+ + VA + P DQ+++ + E L K+P + +D
Sbjct: 616 PLSLANFHQQSGRAGRRRKDSMTIVVASDNPTDQHYVAHSEILLEDKNPDSYQELILDFD 675
Query: 667 NHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYI 726
N +LE H+ CAA E P+ + DEKYF N YLS+ + Y
Sbjct: 676 NILILEGHIQCAAFELPIRIERDEKYF------------NSKYLSTICHERLQHTVDGYN 723
Query: 727 GHEKM---PSHTISIRAIESERYEVIDMQS--NEVLEEIEESKAFFQVYEGAVYMHQGHT 781
H + PS +S+R +E + + V+D+ + N ++EEIE S+ F +Y+G +++HQG+
Sbjct: 724 THNRFLPWPSKFVSLRGVEEDEFAVVDITNGRNIIIEEIEASRTSFTLYDGGIFIHQGYP 783
Query: 782 YLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALAC 841
YL+KE N + A Q+ D+ + T RD+TD+ + KD +
Sbjct: 784 YLIKEFNPDERYAKVQRVDVDWITSQRDFTDV---DPKEIELVRSLKDSDIPVYFGKIES 840
Query: 842 TVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVP-QSVKAVVEQNFSFRSGL 900
T+ FGF+++ + + II D VE + P S+ WI +P ++++ E++ + +
Sbjct: 841 TIIV--FGFFKVDKQNRII-DAVETHNPPVIINSKGFWIDLPVRALEICNEKSLNVAGAI 897
Query: 901 HAASHALLHVVPIYVRCNFSDLAPECPNP-------HDSRYFPERILLYDRHPG--GTGV 951
HAA+HA++ ++P ++ +++ EC P SR P R++ YD G G+G+
Sbjct: 898 HAATHAIIGLLPRFIVAGVDEISTECKAPEKEFAERQTSRKRPARLVFYDSKGGKYGSGL 957
Query: 952 S 952
S
Sbjct: 958 S 958
>gi|321311691|ref|YP_004203978.1| putative ATP-dependent helicase [Bacillus subtilis BSn5]
gi|418032619|ref|ZP_12671102.1| putative ATP-dependent helicase [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|430758403|ref|YP_007209243.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
BSP1]
gi|320017965|gb|ADV92951.1| putative ATP-dependent helicase [Bacillus subtilis BSn5]
gi|351471482|gb|EHA31603.1| putative ATP-dependent helicase [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|430022923|gb|AGA23529.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 749
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 242/739 (32%), Positives = 400/739 (54%), Gaps = 60/739 (8%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+V+ +I R+A +P+++ + K+AL GI +LY+HQ + G+++V T T
Sbjct: 19 VVNWHEIEPREAKTRPMPESIDERIKAALSKRGIDELYTHQYSAFQYVQKGESIVTVTPT 78
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGD 339
+SGK+LCYNLPVL++++ D ++ ALY+FPTKALAQDQ L + I YDGD
Sbjct: 79 ASGKTLCYNLPVLQSIAQDETNRALYLFPTKALAQDQKSELNEIIDEMGIDIKSFTYDGD 138
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T+ R +R ++ITNPDMLH +ILP+H ++ + NL
Sbjct: 139 TSPAIRQKVRKAGHIVITNPDMLHSAILPHHTKWVSLFENL------------------- 179
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
+++VIDE H Y+G FG H A ++RRL R+C YGSDP F+ ++AT ANP+E +L
Sbjct: 180 KYIVIDELHTYRGVFGSHVANVIRRLKRIC-RFYGSDPVFICTSATIANPKELGEQLTG- 237
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
+ L+ ++G+P +K FV +NP ++NK N S +EV+ L
Sbjct: 238 KPMRLVDDNGAPSGRKHFVFYNP-----PIVNK----------PLNIRRSATAEVNELAK 282
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDF 579
E +++ ++ I F RSR E++LS+ +E++++ SI YR GY+ ++RR IE+
Sbjct: 283 EFLKNKVQTIVFARSRVRVEIILSHIQELVKKEIG--TKSIRGYRGGYLPKERREIEKGL 340
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFE 639
G + GV +TNALELG+D+G + V + G+PGS+AS WQQAGR+GRR SL + VA
Sbjct: 341 REGDILGVVSTNALELGVDIGQLQVCVMTGYPGSVASAWQQAGRAGRRHGESLIIMVANS 400
Query: 640 GPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSS 699
P+DQY +++PE F E I+ +N +L HL CAA E P DE+ FG S
Sbjct: 401 TPIDQYIVRHPEYFFNRSPESARINPENLIILVDHLKCAAYELPFRA--DEE-FGPMEVS 457
Query: 700 GITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVI---DMQSNEV 756
I YL + L + + + + E P+ IS+R+ E ++ D+ + +
Sbjct: 458 DILE-----YLEEEAVLHRNGERYHW-ASESFPASNISLRSASQENVVIVDQSDIANVRI 511
Query: 757 LEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVS 816
+ E++ A +++ A+Y+H+G Y V++L+ K A +K D++Y YTD +++
Sbjct: 512 IGEMDRFSAMTLLHDEAIYLHEGVQYQVEKLDWDHKKAYVRKVDVEY------YTDANLA 565
Query: 817 GGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQ 876
+K++ ++T+ TV F ++ + + ++LP+ +
Sbjct: 566 VQLKVLEIDKTKEK-SRTSLHYGDVTVNALPTIFKKIKMTTFENIGSGPIHLPEEELHTS 624
Query: 877 AVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFP 936
A W+++ + + + E+ + L S+ L H+VP+Y+ C+ +D+ P
Sbjct: 625 AAWLEIKTADEDIGEK--TLEQLLLGISNVLQHIVPVYIMCDRNDVHVVSQIKAAHTGLP 682
Query: 937 ERILLYDRHPGGTGVSKQV 955
I LYD +PGG G++++V
Sbjct: 683 -TIFLYDHYPGGIGLAEEV 700
>gi|435852027|ref|YP_007313613.1| helicase family protein with metal-binding cysteine cluster
[Methanomethylovorans hollandica DSM 15978]
gi|433662657|gb|AGB50083.1| helicase family protein with metal-binding cysteine cluster
[Methanomethylovorans hollandica DSM 15978]
Length = 934
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 253/760 (33%), Positives = 393/760 (51%), Gaps = 63/760 (8%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E++E ++ +GQ+VH+EDI A+ + L AL TGI +LY HQ E++
Sbjct: 5 ELIERIKSSRRYEGQIVHIEDIPAKDPFYSSV--ELKPIIHYALDETGIKQLYVHQVEAV 62
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
+ GKN+V++T T+SGKSLCY LP+ E + D +++ALY+ P AL DQL+ +
Sbjct: 63 EKAREGKNIVLSTSTASGKSLCYMLPIFETILEDPAATALYISPLNALVNDQLQTFRNFS 122
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLR-DNARLLITNPDMLHMSILPYHGQFSRILSNLRLI 383
+ I+I + G ++ ++ ++ ++ R++ +NPDMLH+S L + Q+ R LSNLR
Sbjct: 123 QLMGLDININKFIGAMSKNEKDAVKYNDPRIVFSNPDMLHLSFLQWKHQWKRFLSNLR-- 180
Query: 384 AFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFST 443
F+V+DE+H Y G G H A +LRRL R+C H YG+ P ++ T
Sbjct: 181 -----------------FIVLDESHTYSGVMGSHMANLLRRLNRVCDH-YGAHPQYICCT 222
Query: 444 ATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNA 503
AT NP EH L + LI ND S + FV WNP + N
Sbjct: 223 ATIGNPVEHTTALIGKDAV-LIDNDSSGSGPQKFVFWNPPLYAK------------YGNF 269
Query: 504 ANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVY 563
+ +S E LF VQ G + IAF RSR+ E + ++ IL I Y
Sbjct: 270 TIRKAS-FGETIDLFTTFVQSGSQTIAFARSRQKVERMFIESKNILAHRGAE--QKISSY 326
Query: 564 RAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGR 623
R GY +R IE+ G++ GV +TNALELGID+G +D + GFPG+I S QQAGR
Sbjct: 327 RGGYHGHEREIIEKGLSSGQIAGVISTNALELGIDIGGLDACIMDGFPGTIMSARQQAGR 386
Query: 624 SGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHP 683
+GR S+ V VA PLDQY+M+ P F+ E I+ N + HL+CAA E P
Sbjct: 387 AGRGHAQSIVVLVADPNPLDQYYMRNPGDFFRKQCEEAVINVSNRYIQAGHLLCAAREIP 446
Query: 684 LSLIYDEKYFGSGLSSGITTLKNRGYLSS---DPSLDSSAKIFEYIGHEKMPSHTISIRA 740
L DE+YFG+ S+ + L+ G L +LD+ A + +SIR
Sbjct: 447 LRAA-DEQYFGNEFSNIVNVLEEEGLLEGTDEKKALDTDAHMH------------VSIRD 493
Query: 741 IESERYEVIDMQSNEVLEE-IEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKA 799
I+S+ Y +ID S + LE + +A+ + +EGAVY+++G+ Y+V N + +
Sbjct: 494 IDSDAYTIIDKASKKPLENSLCRLQAYREAFEGAVYINKGNAYVVTTQNHEKREIHVEHT 553
Query: 800 DLKYFTKTRDYTDIHVSGGNNAYATK-ISKDQLTKTTAQALACTVTTTWFGFYRLWRGSG 858
+Y+T++ +++ + N TK +S K ++ T T G+ +L + +
Sbjct: 554 QNEYYTRSMVSSEVII---RNVLETKALSTCPDVKVGFGSVDVTQQVT--GYKKLQQRTD 608
Query: 859 IIFDTVELYLPKYSYESQAVWIQVPQ-SVKAVVEQNFSFRSGLHAASHALLHVVPIYVRC 917
D L +PK++ E++A+WI++P S+ AV + F G+HA HA++ + P+++
Sbjct: 609 KELDQCALQMPKFTLETEALWIELPGWSMGAVAAHDRDFAGGIHAIEHAIIAMYPLHLLA 668
Query: 918 NFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTD 957
+ +D+ H I +YD HPGG G ++ D
Sbjct: 669 DRNDVGGLSTAEHADIGGSSGIFVYDGHPGGVGYAENGYD 708
>gi|376289477|ref|YP_005161724.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae C7 (beta)]
gi|372102873|gb|AEX66470.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae C7 (beta)]
Length = 778
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 250/738 (33%), Positives = 373/738 (50%), Gaps = 60/738 (8%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
H+E+I R A + P + L+ GI++LYSHQA++ + G NVVVAT TSS
Sbjct: 31 HIENIPPRSARYLPWPAWTAPELQQELERRGIAQLYSHQAQAADLAWTGTNVVVATGTSS 90
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFD--ASIDIGVYDGD 339
GKSL Y LP+L A+S D + ALY+ PTKAL DQL ++++ + D A + YDGD
Sbjct: 91 GKSLSYLLPILSAMSQDPQACALYLTPTKALGSDQLAHVMSLVGSTDTLAGVHPAPYDGD 150
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T R +R+ +R + +NPDMLH ILP H +++R F +
Sbjct: 151 TPADARAGIREQSRFVFSNPDMLHAGILPNHQRWARF-------------------FRHL 191
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
RF+VIDE H+Y+G FG AL++RRL RL + YGS P+ + ++ATS +P H L
Sbjct: 192 RFIVIDECHSYRGVFGAGVALVIRRLLRLAAR-YGSTPTVMLASATSNDPAAHASTLIGQ 250
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
+ + + DG+P + +LW P D + N A + +E + + A
Sbjct: 251 PVVAVTE-DGAPTGARTVMLWEP----------GFVDGAEGENGAPIRRAASTESAGIMA 299
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LVDSICVYRAGYVAEDRRRIERD 578
++ G R + F RSR+ E+V E L H + YRAGY+AEDRR +ER
Sbjct: 300 TLIAAGARTLTFVRSRRQAEVVALRCAEELAYHGRHDFASRVAAYRAGYLAEDRRALERK 359
Query: 579 FFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAF 638
G L GVA+TNALELGID+G +D + G+PG++AS WQQAGR+GRR + SL VA
Sbjct: 360 LDDGTLLGVASTNALELGIDIGGLDAVVTAGYPGTVASFWQQAGRAGRRGQGSLVTLVAR 419
Query: 639 EGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLS 698
+ P+D Y + +PE L P+E D N +L HL CAA E PL+ + ++
Sbjct: 420 DDPMDTYLVHHPEALLGRPMEKIVFDPHNPHILSGHLYCAAAESPLTEAEIDALNAREVA 479
Query: 699 SGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHT-ISIRAIESERYEVIDMQSNEVL 757
L N GYL P+ F + P+H+ +S+R ++D +L
Sbjct: 480 Q---QLANDGYLRHRPT-----GWFAVEQPGQPPAHSLVSLRG-SGHHVAIVDRSDGRLL 530
Query: 758 EEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSG 817
I+ ++A QV+ GAVY+HQG T++++EL+ +A+ + D + F R TDI + G
Sbjct: 531 GTIDSARAASQVHPGAVYLHQGETFVIEELDDQVALAVPDQPDYQTF--ARSTTDIRIVG 588
Query: 818 GNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQA 877
+ ++ L VT G Y + G + V L +P + ++A
Sbjct: 589 EVDKVCNPAPGLWVSN-----LVVEVTDRVVG-YTMKASDGSVLAMVPLQMPPQTLVTRA 642
Query: 878 VWIQVPQSVKAVVEQNFSFR---SGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRY 934
V +V +V + LHAA HA + ++P+ C+ D+ H
Sbjct: 643 ----VAYTVDPLVLDSLGITDVPGALHAAEHAAIGLLPLIATCDRWDIGGVSTAEHPDTG 698
Query: 935 FPERILLYDRHPGGTGVS 952
P + +YD HPGG G +
Sbjct: 699 LPT-VFVYDGHPGGAGFA 715
>gi|255324198|ref|ZP_05365320.1| ATP-dependent RNA helicase [Corynebacterium tuberculostearicum
SK141]
gi|255298714|gb|EET78009.1| ATP-dependent RNA helicase [Corynebacterium tuberculostearicum
SK141]
Length = 787
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 252/763 (33%), Positives = 386/763 (50%), Gaps = 60/763 (7%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E++E +++ + H + ++A E P+ +L K L G+ KLY HQAE
Sbjct: 13 ELLEFIQRRLDESTLTFHTT-LPPQRAQYAEWPEWVLPELKEKLVEGGVGKLYRHQAELA 71
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
A+ AG++ V++T TSSGKSL Y LP+L L+ D S+ ALY+ PTKAL DQL+A+L +
Sbjct: 72 QAAWAGEDAVISTGTSSGKSLGYQLPILSRLAQDPSACALYLTPTKALGSDQLQAVLELC 131
Query: 325 KAFDA--SIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRL 382
+ A + YDGDT Q+ R +RD++R + +NPDM+HMS+L H +++R+L +L
Sbjct: 132 RGIPALKGVVPSPYDGDTPQESRAGVRDHSRFIFSNPDMVHMSLLAAHARWARLLRHLE- 190
Query: 383 IAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFS 442
F+VIDE H+Y+G FG + AL+LRRL RLC+H YGS P+ +++
Sbjct: 191 ------------------FIVIDECHSYRGVFGANVALVLRRLLRLCAH-YGSRPTVIYA 231
Query: 443 TATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRN 502
+AT +P H L I D +P + LW P + + +
Sbjct: 232 SATMKDPARHAQRLTGRPA-RAITEDTAPTGARTVALWEP----------GFIEGAEGEH 280
Query: 503 AANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEET--APHLVDSI 560
A + +E + + A + G R + F RSR+ E+V E+L + P I
Sbjct: 281 GAPVRRAATTEAAEMMASFIAEGARTMTFVRSRRSAEVVAMRAAEVLSGSLGRPDFAQRI 340
Query: 561 CVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQ 620
YRAGY+AEDRR++ER L GVA T+ALELGIDVG +D + GFPG++AS WQQ
Sbjct: 341 AAYRAGYLAEDRRKLERALDDASLLGVATTSALELGIDVGGLDAVVTAGFPGTVASFWQQ 400
Query: 621 AGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAAL 680
AGR+GRR + SL V +A + P+D Y + +PE L P+E + N +L H+ CAA+
Sbjct: 401 AGRAGRRGQGSLVVLIARDEPMDTYLVHHPEALLGRPVEASVFNPANPYILFGHVYCAAV 460
Query: 681 EHPLSLIYDEKYFGSGL-----SSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHT 735
E PL + + SG+ + RG+ + S ++ H
Sbjct: 461 EKPLDDATIAAWGAQDVVHQLAESGLLRRRERGWFAVPVPAHSPEELSPETAHT-----A 515
Query: 736 ISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIAL 795
+S+R E ++D +L I+ ++A QV+ GAVY+HQG +++++EL LS +AL
Sbjct: 516 VSLRGGAGEEVMIVDSSDGRLLGTIDAARATSQVHPGAVYLHQGESFVIEELILSDYLAL 575
Query: 796 CQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTV---TTTWFGFYR 852
+ Y T R TDI + D L + V T Y+
Sbjct: 576 ARPEAPDYSTTPRSTTDIRI---------LREADNLVNYSPGLWVADVEVEVTDRVTGYQ 626
Query: 853 LWRGSGIIFDTVELYLPKYSYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVV 911
+ G I D + L LP+ ++AV + P ++ A+ LHAA HA + ++
Sbjct: 627 VRLADGTIGDDIPLDLPEQRLVTRAVAYTIDPMALSAMGVTASDTPGTLHAAEHAAIGLL 686
Query: 912 PIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
P+ C+ D+ H P + +YD HPGG G +++
Sbjct: 687 PLIATCDRWDIGGVSTALHPDTQLPT-VFVYDGHPGGAGFAEE 728
>gi|383788478|ref|YP_005473047.1| putative ATP-dependent helicase [Caldisericum exile AZM16c01]
gi|381364115|dbj|BAL80944.1| putative ATP-dependent helicase [Caldisericum exile AZM16c01]
Length = 746
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 253/741 (34%), Positives = 396/741 (53%), Gaps = 62/741 (8%)
Query: 217 QGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVA 276
+GQ+V +I + + P + K LK GI Y HQ E+ G N+++
Sbjct: 16 KGQIVKTFNIERESYEIFDFPSEIDKEIKQKLKKKGILGFYKHQLEAFNLLKKGFNIIIT 75
Query: 277 TMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVY 336
+ T+SGK+L +N+P++ LS + ++ALY++PTKALAQDQL + +T +I Y
Sbjct: 76 SSTASGKTLSFNIPIVSELSKNEIATALYLYPTKALAQDQLEKISELT-----NISAFTY 130
Query: 337 DGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIF 396
DGDT +DR ++R + R++I NPD+LH+ +LP H +SR L NL+
Sbjct: 131 DGDTAPQDRQYIRKHGRIVIANPDILHVGLLPNHTLWSRFLINLK--------------- 175
Query: 397 LFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMEL 456
FVVIDEAH Y G G H +++LRRL RL ++ YGS P F+ S+AT NP E+ +L
Sbjct: 176 ----FVVIDEAHYYSGVLGSHFSMVLRRLRRLLAY-YGSYPQFILSSATLENPLEYSSKL 230
Query: 457 ANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSY 516
ELI+ +P KLFV++NP ++N+ A N + I E
Sbjct: 231 VG-EKFELIKGPLNPPFGKLFVIYNP-----PIVNE----------ALNLRKNIIQEAVN 274
Query: 517 LFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIE 576
L ++++ IAF +SR+ E++ +E + T S+ YRAGY E RR IE
Sbjct: 275 LIEVLLKNNQTVIAFVKSRQGVEILTKLLQERIGNTF-----SVSPYRAGYSKELRRTIE 329
Query: 577 RDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYV 636
R G++ V ATNALELGID+G +D T+ +G+PGSI+SL+QQ+GRSGR S+ ++
Sbjct: 330 RKLKSGEIKCVVATNALELGIDIGELDATVIVGYPGSISSLFQQSGRSGRTHE-SITFFL 388
Query: 637 AFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSG 696
PLDQYF K PE LF+ E +ID N +L H++CA+ E P+ D++YFG
Sbjct: 389 TSSNPLDQYFTKDPEYLFRGKFESLNIDLSNPYILNPHILCASYELPIQWDVDKEYFGDN 448
Query: 697 LSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEV 756
L + L+ G L + K F + K P+ +S+R+ + +ID+++N V
Sbjct: 449 LKWTLQELERGGLL-----VRKGDKYF--LNGRKSPASQVSLRSSGEDNIRLIDVETNTV 501
Query: 757 LEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVS 816
+E I +++A + + GAVYMH G TY+VK ++L ++ QK Y+T + I V
Sbjct: 502 IERISKNRALEEAFVGAVYMHLGETYVVKNMDLENREIYLQKEVTDYYTDSLSIETIWVD 561
Query: 817 GGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQ 876
+ + + K A TV GF + + +T+ L LPK +++++
Sbjct: 562 -------NILKEKDVFKVKAYFGEVTVEEVIRGFVKKQFFTDRKIETLPLELPKITFKTK 614
Query: 877 AVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFP 936
A+WI + + +++ F +HAA HA++ V P+ V+C+ +D+ +P
Sbjct: 615 ALWITIDDKITDKIKKVEDFLGAIHAAEHAMVGVTPLVVQCDRNDIG-GVSHPLHPDTGM 673
Query: 937 ERILLYDRHPGGTGVSKQVTD 957
I LYD GG G++++ D
Sbjct: 674 TTIFLYDGIEGGIGITEKAYD 694
>gi|227487249|ref|ZP_03917565.1| ATP-dependent helicase [Corynebacterium glucuronolyticum ATCC
51867]
gi|227092907|gb|EEI28219.1| ATP-dependent helicase [Corynebacterium glucuronolyticum ATCC
51867]
Length = 742
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 251/751 (33%), Positives = 379/751 (50%), Gaps = 78/751 (10%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E+ L +G + + H+ R A P + + L GI+ L+SHQA++
Sbjct: 6 EIAAQLTNALGKE-HVEHLRITPTRAATFAPYPAWVDPGLREFLTERGITSLFSHQADAA 64
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
A+ G+NVV++T TSSGKSL Y LP+L ++ ++ALY+ PTKALA DQ+R + A+
Sbjct: 65 TAAHDGENVVISTGTSSGKSLAYLLPILTRMAKQEGATALYLTPTKALATDQIRNVNAII 124
Query: 325 KAFDAS-IDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLI 383
+ S ++ YDGDT Q+ R +R+ +R + TNPDMLH +ILP H ++SR L L
Sbjct: 125 RGAGISGVNPNAYDGDTPQEVRRAVREMSRFIFTNPDMLHQAILPDHARWSRFLRRLA-- 182
Query: 384 AFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFST 443
FVVIDE H+Y+G FG H + ++ R RL +H YG+ P F+ ++
Sbjct: 183 -----------------FVVIDECHSYRGVFGAHMSQVMWRFQRLLAH-YGATPVFIAAS 224
Query: 444 ATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNA 503
AT+A+P H L + + I DG+P ++ +LW P
Sbjct: 225 ATAADPGAHAARLLGVP-VRAITRDGAPRGERTTILWTP--------------------- 262
Query: 504 ANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELV-LSYTREILEETAPHLVDSICV 562
+ +S +E +++ + ++ GLR + F RSR+ E V + E+L +
Sbjct: 263 -GEETSATTEAAHIMSVLLSEGLRTLTFVRSRRAAETVAMQCGEELLRSGRTEEAKRVAA 321
Query: 563 YRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAG 622
YRAGY+AEDRRR+ER G++ G+A TNALELGIDVG +D + GFPG+IAS QQAG
Sbjct: 322 YRAGYLAEDRRRLERQLDTGEIIGLATTNALELGIDVGGLDAVITTGFPGTIASFTQQAG 381
Query: 623 RSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEH 682
R+GRR + +L+V+VA + P+DQY + +PE L PIE + N V+E HL CAA E
Sbjct: 382 RAGRRGQGALSVFVARDEPMDQYLVHHPEALLDKPIERFAFNPANPYVVEPHLACAAAEK 441
Query: 683 PLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIE 742
PL+ + +GL + G +P L P + +R
Sbjct: 442 PLTTEEIGDFSPAGL-----VRRGNGLYYPEPGLH--------------PHQDVHLRG-G 481
Query: 743 SERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLK 802
+ ++D Q +L I+ES+A +++ GA+Y+HQG Y+ +E L IAL
Sbjct: 482 GNQVTIVDAQDGRLLGTIDESRAKSELHPGAIYLHQGRPYVSEE--LVDDIALVSPTHAD 539
Query: 803 YFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFD 862
+ T T TDI + + + + + Q VT GF R R SG I
Sbjct: 540 FSTMTLSETDIEI-------LRTVEERRRPGISVQLNEVEVTEQVTGFIRRHR-SGEILG 591
Query: 863 TVELYLPKYSYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSD 921
L+LP ++AV + P ++AV + LHAA HA + ++P+ C+ D
Sbjct: 592 QESLHLPPDVLTTRAVTYTIDPVLLEAVGLTPADWPGALHAAEHAAIGILPLIATCDRWD 651
Query: 922 LAPECPNPHDSRYFPERILLYDRHPGGTGVS 952
L H P + +YD +PGG G +
Sbjct: 652 LGGLSTADHPDTMLPT-VFVYDGYPGGAGFA 681
>gi|375290002|ref|YP_005124542.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae 241]
gi|376244835|ref|YP_005135074.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae HC01]
gi|371579673|gb|AEX43340.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae 241]
gi|372107465|gb|AEX73526.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae HC01]
Length = 778
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 251/738 (34%), Positives = 372/738 (50%), Gaps = 60/738 (8%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
H+E+I R A + P + L+ GI++LYSHQA++ + G NVVVAT TSS
Sbjct: 31 HIENIPPRSARYLPWPAWTAPELQQELERRGIAQLYSHQAQAADLAWTGTNVVVATGTSS 90
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFD--ASIDIGVYDGD 339
GKSL Y LP+L A+S D + ALY+ PTKAL DQL ++++ D A + YDGD
Sbjct: 91 GKSLSYLLPILSAMSQDPQACALYLTPTKALGSDQLAHVMSLVGNVDTLAGVHPAPYDGD 150
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T R +R+ +R + +NPDMLH ILP H +++R F +
Sbjct: 151 TPADARAGIREQSRFVFSNPDMLHAGILPNHQRWARF-------------------FRHL 191
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
RF+VIDE H+Y+G FG AL++RRL RL + YGS P+ + ++ATS +P H L
Sbjct: 192 RFIVIDECHSYRGVFGAGVALVIRRLLRLAAR-YGSTPTVMLASATSNDPAAHASTLIGQ 250
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
+ + + DG+P + +LW P D + N A + +E + + A
Sbjct: 251 PVVAVTE-DGAPTGARTVMLWEP----------GFVDGAEGENGAPIRRAASTESAGIMA 299
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LVDSICVYRAGYVAEDRRRIERD 578
++ G R + F RSR+ E+V E L H + YRAGY+AEDRR +ER
Sbjct: 300 TLIAAGARTLTFVRSRRQAEVVALRCAEELAYHGRHDFASRVAAYRAGYLAEDRRALERK 359
Query: 579 FFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAF 638
G L GVA+TNALELGIDVG +D + G+PG++AS WQQAGR+GRR + SL VA
Sbjct: 360 LDDGTLLGVASTNALELGIDVGGLDAVVTAGYPGTVASFWQQAGRAGRRGQGSLVTLVAR 419
Query: 639 EGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLS 698
+ P+D Y + +PE L P+E D N +L HL CAA E PL+ + ++
Sbjct: 420 DDPMDTYLVHHPEALLGRPMEKIVFDPHNPHILSGHLYCAAAESPLTETEIDALNAREVA 479
Query: 699 SGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHT-ISIRAIESERYEVIDMQSNEVL 757
L N GYL P+ F + P+H+ +S+R ++D +L
Sbjct: 480 Q---QLANDGYLRHRPT-----GWFAVEQPGQPPAHSLVSLRG-SGHHVAIVDRSDGRLL 530
Query: 758 EEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSG 817
I+ ++A QV+ GAVY+HQG T++++EL+ +A+ + D + F R TDI + G
Sbjct: 531 GTIDSARAASQVHPGAVYLHQGETFVIEELDDQVALAVPDQPDYQTF--ARSTTDIRIVG 588
Query: 818 GNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQA 877
+ ++ L VT G Y + G + V L +P + ++A
Sbjct: 589 EVDKVCNPAPGLWVSN-----LVVEVTDRVVG-YTMKASDGSVLAMVPLQMPPQTLVTRA 642
Query: 878 VWIQVPQSVKAVVEQNFSFR---SGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRY 934
V +V +V + LHAA HA + ++P+ C+ D+ H
Sbjct: 643 ----VAYTVDPLVLDSLGITDVPGTLHAAEHAAIGLLPLIATCDRWDIGGVSTAEHPDTG 698
Query: 935 FPERILLYDRHPGGTGVS 952
P + +YD HPGG G +
Sbjct: 699 LPT-VFVYDGHPGGAGFA 715
>gi|357412628|ref|YP_004924364.1| hypothetical protein Sfla_3426 [Streptomyces flavogriseus ATCC
33331]
gi|320009997|gb|ADW04847.1| Protein of unknown function DUF1998 [Streptomyces flavogriseus ATCC
33331]
Length = 836
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 263/767 (34%), Positives = 385/767 (50%), Gaps = 61/767 (7%)
Query: 199 SQLLPLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYS 258
S+ P +++ L G ++ H E + R PD + SA+ GI ++
Sbjct: 43 SRPSPAVVLDRLAASAGRAARITHTEHLPPRAGTHATWPDRIRPEVISAIGQAGIDHPWT 102
Query: 259 HQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL---SH---DLSSSALYMFPTKAL 312
HQA + +L G++VV++T T+SGKSL Y PVL L SH ++ALY+ PTKAL
Sbjct: 103 HQAAAAEHALDGESVVISTGTASGKSLAYLAPVLSTLLDGSHAPNGRGTTALYLAPTKAL 162
Query: 313 AQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQ 372
A DQ R++ A+ ++I VYDGDT ++R W+R A ++TNPDMLH ILP H +
Sbjct: 163 AADQRRSVKALATPLGSAIRPAVYDGDTPVEEREWVRQYANYVLTNPDMLHRGILPSHPR 222
Query: 373 FSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHV 432
++ L LR FVVIDE H Y+G FG H A +LRRL RLC+
Sbjct: 223 WASFLRALR-------------------FVVIDECHTYRGVFGSHVAQVLRRLRRLCAR- 262
Query: 433 YGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNK 492
YGSDP F+ ++AT+A+P L L E + +D SP + +F LW P
Sbjct: 263 YGSDPVFLLASATAAHPSVAAGRLTGLPVKE-VADDASPRGEMVFALWEP---------- 311
Query: 493 SQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEET 552
TD+ A + ++ +E + L ++ G+R +AF RSR+ EL+ +E L E
Sbjct: 312 PLTDLHGEGGAPVRRTA-TAETADLLTDLTVQGVRSVAFVRSRRGAELISVIAKERLAEV 370
Query: 553 APHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPG 612
L + YR GY+ E+RR +ER G L G+AAT ALELGIDV +D + G+PG
Sbjct: 371 DRSLPGRVAAYRGGYLPEERRALERALHSGDLLGLAATTALELGIDVSGLDAVVIAGYPG 430
Query: 613 SIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLE 672
+ ASLWQQAGR+GR + +LAV VA + PLD + + +PE LF P+E +D N VL
Sbjct: 431 TRASLWQQAGRAGRSGQGALAVLVARDDPLDTFLVHHPEALFDQPVESTVLDPDNPYVLA 490
Query: 673 QHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMP 732
HL AA E PL+ D FG + + L+ L + + E+
Sbjct: 491 PHLCAAAAEIPLTE-DDITLFGPTVPELLPQLEAAKLLRR------RTTGWHWTRRERAA 543
Query: 733 SHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSK 792
T IR ++++ + +L ++E+ A V+EGAV++HQG TYLV+ L+L
Sbjct: 544 DLT-DIRGAGGRPVQIVEADTGRLLGTVDEAAAHTSVHEGAVHLHQGRTYLVRALDLEDS 602
Query: 793 IALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQAL---ACTVTTTWFG 849
+AL ++A Y T RD T I V + D L + VT
Sbjct: 603 VALVEEAVPPYSTNARDTTAISV----------LETDTEIPWGDGRLCFGSVEVTNQVVS 652
Query: 850 FYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSG-LHAASHALL 908
F R +G + +L LP + ++AVW V + + G LHAA HA +
Sbjct: 653 FLRRKLITGEVLGETKLDLPPRTLRTRAVWWTVTEDQLDAARISPEILGGALHAAEHASI 712
Query: 909 HVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
++P++ C+ D+ H P + +YD HPGG G S++
Sbjct: 713 GMLPLFATCDRWDIGGVSVPLHPDTLLPT-VFVYDGHPGGAGFSERA 758
>gi|376283821|ref|YP_005157031.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae 31A]
gi|371577336|gb|AEX41004.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae 31A]
Length = 778
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 251/738 (34%), Positives = 373/738 (50%), Gaps = 60/738 (8%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
H+E+I R A + P + L+ GI++LYSHQA++ + G NVVVAT TSS
Sbjct: 31 HIENIPPRSAHYLPWPAWTAPELQRELERRGIAQLYSHQAQAADLAWTGTNVVVATGTSS 90
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFD--ASIDIGVYDGD 339
GKSL Y LP+L A+S D + ALY+ PTKAL DQL ++++ + D A + YDGD
Sbjct: 91 GKSLSYLLPILSAMSQDPQACALYLTPTKALGSDQLAHVMSLVGSTDTLAGVHPAPYDGD 150
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T R +R+ +R + +NPDMLH ILP H +++R F +
Sbjct: 151 TPTDARAGIREQSRFVFSNPDMLHAGILPNHQRWARF-------------------FRHL 191
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
RF+VIDE H+Y+G FG AL++RRL RL + YGS P+ + ++ATS +P H L
Sbjct: 192 RFIVIDECHSYRGVFGAGVALVIRRLLRLAAR-YGSTPTVMLASATSNDPAAHASTLIGQ 250
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
+ + + DG+P + +LW P D + N A + +E + + A
Sbjct: 251 PVVAVTE-DGAPAGARTVMLWEP----------GFVDGAEGENGAPIRRAASTESAGIMA 299
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LVDSICVYRAGYVAEDRRRIERD 578
++ G R + F RSR+ E+V E L H + YRAGY+AEDRR +ER
Sbjct: 300 TLIAAGARTLTFVRSRRQAEVVALRCAEELAYHGRHDFASRVAAYRAGYLAEDRRALERK 359
Query: 579 FFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAF 638
G L GVA+TNALELGIDVG +D + G+PG++AS WQQAGR+GRR + SL VA
Sbjct: 360 LDDGTLLGVASTNALELGIDVGGLDAVVTAGYPGTVASFWQQAGRAGRRGQGSLVTLVAR 419
Query: 639 EGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLS 698
+ P+D Y + +PE L P+E D N +L HL CAA E PL+ + ++
Sbjct: 420 DDPMDTYLVHHPEALLGRPMEKIVFDPHNPHILSGHLYCAAAESPLTEAEIDALNAREVA 479
Query: 699 SGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHT-ISIRAIESERYEVIDMQSNEVL 757
L N GYL P+ F + P+H+ +S+R ++D +L
Sbjct: 480 Q---QLANDGYLRHRPT-----GWFAVEQPGQPPAHSLVSLRG-SGHHVAIVDRSDGRLL 530
Query: 758 EEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSG 817
I+ ++A QV+ GAVY+HQG T++++EL+ +A+ + D + F R TDI + G
Sbjct: 531 GTIDSARAASQVHPGAVYLHQGETFVIEELDDQVALAVPDQPDYQTF--ARSTTDIRIVG 588
Query: 818 GNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQA 877
+ ++ L VT G Y + G + V L +P + ++A
Sbjct: 589 EVDKVCNPAPGLWVSN-----LVVEVTDRVVG-YTMKASDGSVLAMVPLQMPPQTLVTRA 642
Query: 878 VWIQVPQSVKAVVEQNFSFR---SGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRY 934
V +V +V + LHAA HA + ++P+ C+ D+ H
Sbjct: 643 ----VAYTVDPLVLDSLGITDVPGALHAAEHAAIGLLPLIATCDRWDIGGVSTAEHPDTG 698
Query: 935 FPERILLYDRHPGGTGVS 952
P + +YD HPGG G +
Sbjct: 699 LPT-VFVYDGHPGGAGFA 715
>gi|376253441|ref|YP_005141900.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae PW8]
gi|372116525|gb|AEX68995.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae PW8]
Length = 778
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 251/738 (34%), Positives = 373/738 (50%), Gaps = 60/738 (8%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
H+E+I R A + P + L+ GI++LYSHQA++ + G NVVVAT TSS
Sbjct: 31 HIENIPPRSARYLPWPAWTAPELQQELERRGIAQLYSHQAQAADLAWTGTNVVVATGTSS 90
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFD--ASIDIGVYDGD 339
GKSL Y LP+L A+S D + ALY+ PTKAL DQL ++++ + D A + YDGD
Sbjct: 91 GKSLSYLLPILSAMSQDPQACALYLTPTKALGSDQLAHVMSLVGSTDTLAEVYPAPYDGD 150
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T R +R+ +R + +NPDMLH ILP H +++R F +
Sbjct: 151 TPTDARAGIREQSRFVFSNPDMLHAGILPNHHRWARF-------------------FRHL 191
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
RF+VIDE H+Y+G FG AL++RRL RL + YGS P+ + ++ATS +P H L
Sbjct: 192 RFIVIDECHSYRGVFGAGVALVIRRLLRLAAR-YGSTPTVMLASATSNDPAAHASTLIGQ 250
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
+ + + DG+P + +LW P D + N A + +E + + A
Sbjct: 251 PVVAVTE-DGAPTGARTVMLWEP----------GFVDGAEGENGAPIRRAASTESAGIMA 299
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LVDSICVYRAGYVAEDRRRIERD 578
++ G R + F RSR+ E+V E L H + YRAGY+AEDRR +ER
Sbjct: 300 TLIAAGARTLTFVRSRRQAEVVALRCAEELAYHGRHDFASRVAAYRAGYLAEDRRALERK 359
Query: 579 FFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAF 638
G L GVA+TNALELGIDVG +D + G+PG++AS WQQAGR+GRR + SL VA
Sbjct: 360 LDDGTLLGVASTNALELGIDVGGLDAVVTAGYPGTVASFWQQAGRAGRRGQGSLVTLVAR 419
Query: 639 EGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLS 698
+ P+D Y + +PE L P+E D N +L HL CAA E PL+ + ++
Sbjct: 420 DDPMDTYLVHHPEALLGRPMEKIVFDPHNPHILSGHLYCAAAESPLTETEIDALNAREVA 479
Query: 699 SGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHT-ISIRAIESERYEVIDMQSNEVL 757
L N GYL P+ F + P+H+ +S+R ++D +L
Sbjct: 480 Q---QLANDGYLRHRPT-----GWFAVEQPGQPPAHSLVSLRG-SGHHVAIVDRSDGRLL 530
Query: 758 EEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSG 817
I+ ++A QV+ GAVY+HQG T++++EL+ +A+ + D + F R TDI + G
Sbjct: 531 GTIDSARAASQVHPGAVYLHQGETFVIEELDDQVALAVPDQPDYQTF--ARSTTDIRIVG 588
Query: 818 GNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQA 877
+ ++ L VT G Y + G + V L +P + ++A
Sbjct: 589 EVDKVCNPAPGLWVSN-----LVVEVTDRVVG-YTMKASDGSVLAMVPLQMPPQTLVTRA 642
Query: 878 VWIQVPQSVKAVVEQNFSFR---SGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRY 934
V +V +V + LHAA HA + ++P+ C+ D+ H
Sbjct: 643 ----VAYTVDPLVLDSLGITDVPGALHAAEHAAIGLLPLIATCDRWDIGGVSTAEHPDTG 698
Query: 935 FPERILLYDRHPGGTGVS 952
P + +YD HPGG G +
Sbjct: 699 LPT-VFVYDGHPGGAGFA 715
>gi|452910234|ref|ZP_21958915.1| putative helicase [Kocuria palustris PEL]
gi|452834481|gb|EME37281.1| putative helicase [Kocuria palustris PEL]
Length = 801
Score = 401 bits (1030), Expect = e-108, Method: Compositional matrix adjust.
Identities = 256/781 (32%), Positives = 389/781 (49%), Gaps = 77/781 (9%)
Query: 201 LLPLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQ 260
LLPL L +G + Q+ HV ++ R+A P+ + + +A + GI K Y+HQ
Sbjct: 7 LLPL-----LGRGADPE-QVRHVRELPGREAETAAWPETIHPDVVAAYGAIGIDKPYAHQ 60
Query: 261 AESIMASLAGKNVVVATMTSSGKSLCYNLPVLE--------------ALSHDLSSSALYM 306
A +I A+ +V+VAT T+SGKSL Y PVL L H ++ALY+
Sbjct: 61 ARAIRAA-GESHVIVATGTASGKSLAYQAPVLSDLHRGRLAARRAPGRLQHPDEATALYL 119
Query: 307 FPTKALAQDQLRALLAMTKAFDASIDIGV------YDGDTTQKDRMWLRDNARLLITNPD 360
PTKALA DQL AL + + +G+ YDGDT +R W+RD+A ++ NPD
Sbjct: 120 SPTKALAADQLSALEGLIRRGGGPDGVGLDVRARTYDGDTPVSERRWIRDHADAVLCNPD 179
Query: 361 MLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTAL 420
MLH +LP H Q+SR L LR +V++DEAH Y+G FG H A+
Sbjct: 180 MLHAGVLPNHQQWSRFLRRLR-------------------WVIVDEAHVYRGVFGSHVAV 220
Query: 421 ILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLEL--IQNDGSPCAQKLFV 478
+LRRL R+ + +YG+ P + ++ATSA P++ L + E+ I+ D SP V
Sbjct: 221 VLRRLQRVAA-LYGAAPVLIGASATSARPQDSFARLIGAPSEEVTAIREDTSPHGPVTVV 279
Query: 479 LWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLC 538
LW P +S + + N A S + E + + ++V +R +AF SR+
Sbjct: 280 LWEP--------GQSGAEGE---NGAPVRRSAVVEAAEMLTDLVLRQVRTLAFVGSRRGS 328
Query: 539 ELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGID 598
E + LEE P L + YR+GY+ E+RR IE+ G+L G+++T+ALELGID
Sbjct: 329 ETIAQIAHRQLEEVEPGLAHRVAAYRSGYLPEERREIEQQLRDGRLLGLSSTSALELGID 388
Query: 599 VGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPI 658
+ +D L G+PG+ +S +QQ GR+GR + +LA ++A E PLD Y + + E LF P+
Sbjct: 389 IAGLDAVLVAGWPGTRSSFFQQIGRAGRAGQDALAAFIAREDPLDTYLVNHHEALFDDPL 448
Query: 659 ECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDS 718
E D N VL HL AA E PL + + FG G + +T L+ G L P+
Sbjct: 449 EASVFDPGNPYVLAPHLCAAAAETPLK-PQELELFGPGAPAIVTALEEAGRLRRRPA--- 504
Query: 719 SAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQ 778
Y H + P+ +SIR ++I+ + ++L I S+A Q + GAVY+HQ
Sbjct: 505 ----GWYWTHAEDPAGMVSIRGDGGGPLQIIETGTGQLLGSIGTSQAHQQTHPGAVYVHQ 560
Query: 779 GHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQA 838
G +Y+V +L+L + +A +Y+T RD T + V + + Q T +
Sbjct: 561 GRSYVVDDLDLEHHVVSVTRAQPEYWTSARDVTTVSV-------IEEERRRQWGPVTVRF 613
Query: 839 LACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVE-QNFSFR 897
VT+ F R + L LP ++ VW P S A +
Sbjct: 614 GQVQVTSQVVSFQRKAVPGNEVLGEEPLDLPPTDLRTRGVWFTAPGSTLAAAGIEEPDLP 673
Query: 898 SGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTD 957
LHAA HA++ ++P+ C+ D+ H P I ++D HPGG G +++ D
Sbjct: 674 GALHAAEHAMIGLLPLLATCDRWDVGGLSTALHVDTELPT-IFVHDGHPGGAGFAERGYD 732
Query: 958 M 958
+
Sbjct: 733 V 733
>gi|238062259|ref|ZP_04606968.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
sp. ATCC 39149]
gi|237884070|gb|EEP72898.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
sp. ATCC 39149]
Length = 818
Score = 401 bits (1030), Expect = e-108, Method: Compositional matrix adjust.
Identities = 259/754 (34%), Positives = 379/754 (50%), Gaps = 49/754 (6%)
Query: 203 PLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAE 262
P E++ LR G + + HVE + AR V P + ++A G+ + HQAE
Sbjct: 21 PNELLRRLRTGADAD-PVTHVERVPARAGEQVPWPRWAPEELRAAFARRGVVAPWRHQAE 79
Query: 263 SIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLA 322
+ + AG +VVVAT T+SGKSL Y LP L L D ++ LY+ PTKALA DQLRA+
Sbjct: 80 AADLAYAGTHVVVATGTASGKSLAYQLPALATLLADPRATVLYLAPTKALAADQLRAVAG 139
Query: 323 MTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRL 382
+ D + YDGDT + +R W+R ++R ++TNPDMLH ILP H +S L L
Sbjct: 140 LE--LD-GVRPACYDGDTPRAERDWIRRHSRFVLTNPDMLHHGILPGHAHWSGFLRRLA- 195
Query: 383 IAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFS 442
+V++DE H Y+G FG H A +LRRL R C+ +G P V +
Sbjct: 196 ------------------YVIVDECHTYRGVFGSHVAHVLRRLRRQCAR-FGRTPIMVLA 236
Query: 443 TATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRN 502
+ATS +P L L + + +D SP F LW P +L + +
Sbjct: 237 SATSGDPATAAGRLTGLP-VAAVTDDASPRGGVTFALWEP-----PLLPGADDPAVGAVD 290
Query: 503 AANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICV 562
A S + E + L A+ V G+R +AF RSRK E+V + R L+E P L +
Sbjct: 291 LAPVRRSALRETAGLLADAVAAGVRTLAFVRSRKGAEVVAATARRALDEAVPGLGGRVAA 350
Query: 563 YRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAG 622
YRAGY+ E+RR +ER G L G+A+TNALELG+D+ +D L G+PG+ ASLWQQAG
Sbjct: 351 YRAGYLREERRELERALLHGDLLGLASTNALELGVDLVGLDAVLICGWPGTRASLWQQAG 410
Query: 623 RSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEH 682
R+GR +LAV VA + PLD Y + +PE LF P+E +D N VL L CAA E
Sbjct: 411 RAGRSGGEALAVLVARDDPLDTYLVHHPEALFGRPVEATVLDPANPYVLAPQLACAAAEA 470
Query: 683 PLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIE 742
PL+ D + FG G + +L G L P+ Y H + P + +R
Sbjct: 471 PLT-PADLELFGEGAKEAVDSLVEAGALRQRPT-------GWYWRHRERPE--VDLRGEG 520
Query: 743 SERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLK 802
V++ + +L ++ A F V+ GAV++HQG +Y+V L+L+ AL +
Sbjct: 521 GAPVCVVEAATGRLLGTVDGGSAHFLVHPGAVHLHQGVSYVVDSLDLADGCALVHPEEPD 580
Query: 803 YFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFD 862
+ T RD T + V+ + + + + + VT+ + R SG + D
Sbjct: 581 WSTHARDVTSLTVA----SVRSYVDAGPVGLFLGE---VDVTSQVVSYQRRRISSGEVID 633
Query: 863 TVELYLPKYSYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSD 921
T L LP + AVW + P+S+ + + LHAA HA + ++P+ C+ D
Sbjct: 634 TRPLDLPARELRTVAVWFTLSPESLASAGVEPADVPGALHAAEHAAIGLLPLMATCDRWD 693
Query: 922 LAPECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
+ H P + +YD HPGG G +++
Sbjct: 694 IGGLSTALHPDTEAPT-VFVYDGHPGGAGFAERA 726
>gi|384503827|ref|YP_005680497.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis 1002]
gi|302329932|gb|ADL20126.1| DEAD-box ATP dependent DNA helicase [Corynebacterium
pseudotuberculosis 1002]
Length = 785
Score = 401 bits (1030), Expect = e-108, Method: Compositional matrix adjust.
Identities = 262/744 (35%), Positives = 375/744 (50%), Gaps = 63/744 (8%)
Query: 221 VHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTS 280
H+E A+ A + P+ + + AL S GI +LY+HQ E + + V+AT TS
Sbjct: 30 THLETTPAKPARYADWPEWVYPPVREALISRGIQRLYAHQQEVAHNAWEKIDTVIATGTS 89
Query: 281 SGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAM-----TKAFDA--SIDI 333
SGKSL Y LP+L L++D ++ A+Y+ PTKAL DQL A+ A+ T DA S+
Sbjct: 90 SGKSLGYQLPILSCLAYDSTACAIYLTPTKALGSDQLNAVTALLQEAQTLGGDALDSVHP 149
Query: 334 GVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVY 393
YDGDT R +R+ +R + TNPDMLH ILP H +++R+
Sbjct: 150 APYDGDTPSDARSGIREQSRFIFTNPDMLHAGILPNHQRWARL----------------- 192
Query: 394 LIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHC 453
F +RF+VIDE H+Y+G FG +L+LRRL R+ S YGS P+ + ++ATS NP EH
Sbjct: 193 --FRHLRFIVIDECHSYRGVFGAGVSLVLRRLLRIASR-YGSTPTVILASATSNNPAEHA 249
Query: 454 MELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISE 513
EL + + D +P + +LW P L V + + R AA+ SE
Sbjct: 250 -ELLLGRPVCAVTTDSAPTGARTIMLWEP-GFLDGVEGEHGAPV---RRAAS------SE 298
Query: 514 VSYLFAEMVQHGLRCIAFCRSRKLCELV-LSYTREILEETAPHLVDSICVYRAGYVAEDR 572
+ + A ++ G R + F RSR+ EL L E+ P L I YRAGY+AEDR
Sbjct: 299 AASIMATLIAEGARTLTFVRSRRQAELTALRCAEELSYHGRPDLAPRISAYRAGYLAEDR 358
Query: 573 RRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSL 632
RRIE G+L GVA+TNALELGIDVG +D + GFPG++AS WQQAGR+GRR + SL
Sbjct: 359 RRIEEQLDNGQLLGVASTNALELGIDVGGLDAVVTAGFPGTVASFWQQAGRAGRRGQGSL 418
Query: 633 AVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKY 692
VA + P+D Y + +PE L PIE + N +L HL CAALE PLS D +
Sbjct: 419 VTLVARDEPMDTYLVHHPEALLGRPIERTVFNPHNPHILAGHLCCAALEAPLS---DAEI 475
Query: 693 FGSGLSSGITTLKNRGYLS-SDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDM 751
G L+ G L + K E HE +S+R S ++D
Sbjct: 476 NSLGAQQVAERLEREGLLKHRRHGWFAVEKPGEPSAHE-----LVSLRGSGSA-ITIVDE 529
Query: 752 QSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYT 811
VL IE+++A QV+ GAVY+H+G ++++ L+L +AL + T R T
Sbjct: 530 TDGRVLGTIEQTRAVSQVHPGAVYLHRGESFIISSLDLEQHLALAHPDAPDHSTYARSTT 589
Query: 812 DIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKY 871
DI + G + A ++ L VT G Y + G + D V L +P
Sbjct: 590 DIRILGEVDKVANPAPGLWVSN-----LNVEVTDRVTG-YVVKAPDGSVLDVVSLQMPPQ 643
Query: 872 SYESQAVWIQVPQSVKAVVEQNFSFR---SGLHAASHALLHVVPIYVRCNFSDLAPECPN 928
+ ++A V ++ ++ LHAA HA + ++P+ C+ D+
Sbjct: 644 TLITRA----VAYTIDPLILDQLGITDVPGALHAAEHAAIGILPLIATCDRWDIGGVSTE 699
Query: 929 PHDSRYFPERILLYDRHPGGTGVS 952
H P + +YD HPGG G +
Sbjct: 700 MHPDTGLPT-VFVYDGHPGGAGFT 722
>gi|251796639|ref|YP_003011370.1| DEAD/DEAH box helicase [Paenibacillus sp. JDR-2]
gi|247544265|gb|ACT01284.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. JDR-2]
Length = 749
Score = 400 bits (1029), Expect = e-108, Method: Compositional matrix adjust.
Identities = 258/772 (33%), Positives = 410/772 (53%), Gaps = 87/772 (11%)
Query: 198 KSQLLPLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLY 257
K + LP E++E LR S +V+ ++ ++A D++ + AL+ GIS+LY
Sbjct: 3 KKKTLP-ELIEELR----SNENIVNWHEMEPQEAKTTPFDDSVDPRIREALRKRGISELY 57
Query: 258 SHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQL 317
+HQ + + G+N+V T T+SGK+LCYNLPVL+A++ D +S ALY+FPTKALAQDQ
Sbjct: 58 THQGTAFRLASKGENIVAVTPTASGKTLCYNLPVLQAIAKDDTSRALYLFPTKALAQDQK 117
Query: 318 RALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRIL 377
L + I YDGDT+ R +R ++ITNPDMLH +ILP+H ++ +
Sbjct: 118 SELNEIISEMGIDIKSYTYDGDTSPTIRQIVRKAGHIVITNPDMLHSAILPHHTKWVSLF 177
Query: 378 SNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDP 437
NL +++VIDE H Y+G FG H A ++RRL R+C YGS+P
Sbjct: 178 ENL-------------------KYIVIDELHTYRGVFGSHVANVIRRLKRICK-FYGSNP 217
Query: 438 SFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDM 497
+F+ ++AT ANP+E +L S + LI ++G+P +K FV +NP ++N
Sbjct: 218 TFICTSATIANPKELAEQLTG-SPMRLIDDNGAPRGRKHFVFYNP-----PIVNV----- 266
Query: 498 DDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLV 557
N S EV++L E +++ ++ I F RSR E++LS+ +E+++
Sbjct: 267 -----PLNIRKSATVEVNHLAREFLKNKIQTIVFARSRVRVEIILSHIQELVKNEIG--T 319
Query: 558 DSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASL 617
SI YR GY+ + RR IE+ G++ GV +TNALELG+D+G + V + G+PGS+AS
Sbjct: 320 KSIRGYRGGYLPKQRREIEKGLREGEILGVVSTNALELGVDIGQLQVCVMTGYPGSVAST 379
Query: 618 WQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVC 677
WQQAGR+GRR +L + VA P+DQY ++ PE F E I+ +N +L H+ C
Sbjct: 380 WQQAGRAGRRHGEALILMVASSTPIDQYIVQNPEYFFDRNPESARINPENLIILVDHVRC 439
Query: 678 AALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTIS 737
AA E P + + FG S I YL + L S F Y ++ P+ IS
Sbjct: 440 AAYELPFK---NTEEFGPLEISEILE-----YLQEERVLHRSGDTF-YWANQAFPASEIS 490
Query: 738 IRAIESERYEVIDMQS---NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIA 794
+R+ E ++D S ++ E++ A +++ A+Y+H+G Y V++L+ K A
Sbjct: 491 LRSASQENVVIVDQTSVADVRIIGEMDRFSAMTLLHDEAIYLHEGVQYQVEKLDWDHKKA 550
Query: 795 LCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTA---QALACTVTTTWFGFY 851
++ D++Y YTD +++ N +I K +++ + A +A T+ T F
Sbjct: 551 YVREVDVEY------YTDANLA--VNLKVLEIDKSRISGSGAVHQGDVAVTMIPTIFKKI 602
Query: 852 RLWR----GSGIIFDTVELYLPKYSYESQAVWIQV----PQSVKAVVEQNFSFRSGLHAA 903
+L GSG I +LP+ ++A W+++ P+ V+EQ L
Sbjct: 603 KLTTFENIGSGPI------HLPEQELHTRATWLELKDTDPELGTKVLEQL------LLGI 650
Query: 904 SHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
++ + H+VP+ V C+ SD+ P I +YD +PGG G++ V
Sbjct: 651 ANVIQHIVPVMVMCDRSDVHVTSQIKAAHTGLPT-IFIYDHYPGGIGLADDV 701
>gi|311741030|ref|ZP_07714855.1| DEAD/DEAH box family ATP-dependent RNA helicase [Corynebacterium
pseudogenitalium ATCC 33035]
gi|311303832|gb|EFQ79910.1| DEAD/DEAH box family ATP-dependent RNA helicase [Corynebacterium
pseudogenitalium ATCC 33035]
Length = 787
Score = 400 bits (1029), Expect = e-108, Method: Compositional matrix adjust.
Identities = 256/761 (33%), Positives = 387/761 (50%), Gaps = 56/761 (7%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E++E +++ + H + ++A E P+ +L K L G+ KLYSHQAE
Sbjct: 13 ELLEFIQRRLDESTLTFHTT-LPPQRAQYAEWPEWVLPELKDKLVEGGVGKLYSHQAELA 71
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
A+ AG++ V++T TSSGKSL Y LP+L L+ + ++ ALY+ PTKAL DQL+A+L +
Sbjct: 72 QAAWAGEDAVISTGTSSGKSLGYQLPILSRLAQEPTACALYLTPTKALGSDQLQAVLELC 131
Query: 325 KAFDA--SIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRL 382
+ A + YDGDT Q+ R +RD++R + +NPDM+HMS+L H +++R+L +L
Sbjct: 132 RGIPALKGVVPSPYDGDTPQESRAGVRDHSRFIFSNPDMVHMSLLAAHARWARLLRHLE- 190
Query: 383 IAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFS 442
F+VIDE H+Y+G FG + AL+LRRL RLC+H YGS P+ +++
Sbjct: 191 ------------------FIVIDECHSYRGVFGANVALVLRRLLRLCAH-YGSRPTVIYA 231
Query: 443 TATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRN 502
+AT +P H L I D +P + LW P + + +
Sbjct: 232 SATMKDPGRHAQRLTGRPA-RAITEDTAPTGARTVALWEP----------GFIEGAEGEH 280
Query: 503 AANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEET--APHLVDSI 560
A + +E + + A + G R + F RSR+ E+V E+L + P I
Sbjct: 281 GAPVRRAATTEAAEMMASFIAEGARTMTFVRSRRSAEVVAMRAAEVLSGSLGRPDFAQRI 340
Query: 561 CVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQ 620
YRAGY+AEDRR++ER L GVA T+ALELGIDVG +D + GFPG++AS WQQ
Sbjct: 341 AAYRAGYLAEDRRKLERALDDASLLGVATTSALELGIDVGGLDAVVTAGFPGTVASFWQQ 400
Query: 621 AGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAAL 680
AGR+GRR + SL V VA + P+D Y + +PE L P+E + N +L H+ CAA+
Sbjct: 401 AGRAGRRGQGSLVVLVARDEPMDTYLVHHPEALLGRPVEASVFNPANPYILFGHVYCAAV 460
Query: 681 EHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMP--SHT-IS 737
E PL D G + L G L + I + E P +HT +S
Sbjct: 461 EKPLD---DATIAAWGAQDVVHQLAESGLLRRRARGWFAVPIPAHAPEELSPETAHTAVS 517
Query: 738 IRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQ 797
+R E ++D +L I+ ++A QV+ GAVY+HQG +++++EL LS +AL +
Sbjct: 518 LRGGAGEEVMIVDSSDGRLLGTIDAARATSQVHPGAVYLHQGESFVIEELILSDYLALAR 577
Query: 798 KADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTV---TTTWFGFYRLW 854
Y T R TDI + D L + V T Y++
Sbjct: 578 PEAPDYSTTPRSTTDIRI---------LREADNLVNYSPGLWVADVEVEVTDRVTGYQVR 628
Query: 855 RGSGIIFDTVELYLPKYSYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPI 913
G I D + L LP+ ++AV + P ++ A+ LHAA HA + ++P+
Sbjct: 629 LADGTIGDDIPLDLPEQRLVTRAVAYTIDPMALSAMGVTASDTPGTLHAAEHAAIGLLPL 688
Query: 914 YVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
C+ D+ H P + +YD HPGG G +++
Sbjct: 689 IATCDRWDIGGVSTALHPDTQLPT-VFVYDGHPGGAGFAEE 728
>gi|20091495|ref|NP_617570.1| ATP-dependent helicase [Methanosarcina acetivorans C2A]
gi|19916644|gb|AAM06050.1| ATP-dependant helicase [Methanosarcina acetivorans C2A]
Length = 912
Score = 400 bits (1029), Expect = e-108, Method: Compositional matrix adjust.
Identities = 247/747 (33%), Positives = 381/747 (51%), Gaps = 57/747 (7%)
Query: 217 QGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVA 276
+ Q+VHVE+I + A+ P L K+AL GI LYSHQAE++ GK++V+
Sbjct: 17 ENQIVHVEEIPEKDAIYT--PLELEAKVKTALAGVGIESLYSHQAEAVEKIREGKDLVLC 74
Query: 277 TMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVY 336
T T+SGKSL Y +P+ EA+ D ++ALY+ P AL DQL+A L A + I Y
Sbjct: 75 TSTASGKSLTYMIPIFEAILKDPEATALYISPLNALVNDQLKAFLEFEGALGSGAGIARY 134
Query: 337 DGDTTQKDRMWLRDN-ARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLI 395
G + +R+ +++TNP+M+HMS L +H + R SNL+
Sbjct: 135 TGALNAAQKREIREGQTNVVLTNPEMVHMSFLAWHHLWRRFFSNLK-------------- 180
Query: 396 FLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCME 455
F+V+DE+H Y+G G + A +LRRL R+ + YG+ P F+ +AT NP+EH
Sbjct: 181 -----FIVVDESHYYRGVIGSNMANVLRRLLRVAEY-YGASPQFICCSATIGNPKEHTET 234
Query: 456 LANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVS 515
L +E+++N+GS + FV WNP L S SE S
Sbjct: 235 LLG-RKVEVVENNGSSHGSQKFVFWNPPLYLNG-------------KGFTIRRSSFSETS 280
Query: 516 YLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRI 575
LF VQ GL+ +AF RSR+ E + RE+L E L +IC YR+GY +R I
Sbjct: 281 TLFTRAVQAGLQTLAFTRSRQGVERMYKSCRELLRERG--LSSAICSYRSGYFDREREEI 338
Query: 576 ERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVY 635
E+ G+L GV +TNALELGID+G +D + G+PG++ S QQAGR+GR SL +
Sbjct: 339 EKKMNSGELRGVISTNALELGIDIGGLDACILDGYPGTVMSARQQAGRAGRSGNESLVLM 398
Query: 636 VAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGS 695
VA LDQY+M+ P+ F E ++ +N +L HL+CAA E PL DEKYFG
Sbjct: 399 VAGTNALDQYYMRNPDDFFARSSESAVLNPKNPYILAGHLLCAAKEIPLR-ASDEKYFGK 457
Query: 696 GLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNE 755
G S + L+ G L+ L S F P +S+R I++ Y ++ + +
Sbjct: 458 GYSRVVELLEAEGLLAGS-DLKYSPDSF--------PYKHVSLRGIDNNTYSLLAFEGEK 508
Query: 756 VL---EEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTD 812
++IEE+ AF + + GAVYMH+G + + ++ K K Y+TK +
Sbjct: 509 SFPLEKDIEETLAFRECHPGAVYMHRGEPFYINRIDHKKKEIHAVKTHDSYYTKPMIDSS 568
Query: 813 IHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYS 872
+ V YA K + + VT T G+ ++ S +L +P +
Sbjct: 569 VLV---RETYAVKPLR-HAPEVEVGLGDVEVTDTIIGYRKIRTHSDETMSAHDLEMPPIT 624
Query: 873 YESQAVWIQVPQSVKAVVEQN-FSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHD 931
++ A+W+++P ++ ++E++ F G+HA HA++ + P+++ + SD+ H
Sbjct: 625 LQTVALWLKLPNRLQELIEEHKLDFAGGIHAVEHAIISMYPLHLLVDRSDVGGVSTPSHS 684
Query: 932 SRYFPERILLYDRHPGGTGVSKQVTDM 958
I +YD H GG G +++ D+
Sbjct: 685 DLGGKSGIFIYDGHRGGVGYAEKGYDL 711
>gi|63054629|ref|NP_594448.2| RecQ type DNA helicase Hrq1 (predicted) [Schizosaccharomyces pombe
972h-]
gi|212277960|sp|O13983.4|HRQ1_SCHPO RecName: Full=Putative ATP-dependent helicase hrq1; AltName:
Full=Homologous to recQ protein 1
gi|159884006|emb|CAA16993.2| RecQ type DNA helicase Hrq1 (predicted) [Schizosaccharomyces pombe]
Length = 1063
Score = 400 bits (1029), Expect = e-108, Method: Compositional matrix adjust.
Identities = 235/719 (32%), Positives = 381/719 (52%), Gaps = 72/719 (10%)
Query: 250 STGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPT 309
S I K Y HQA++I G +V+V+T TSSGKSL Y +P+L++L D S+A ++FPT
Sbjct: 306 SRNIEKTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSLLEDNQSTAFFVFPT 365
Query: 310 KALAQDQLRALLAMTKAFDA--SIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSIL 367
K+LAQDQ ++L+ + +I + +DGDT + R + +A ++ TNPDMLH +IL
Sbjct: 366 KSLAQDQKKSLIDILSYMPTLKNIRVDTFDGDTPLESRESIIRSANIIFTNPDMLHQTIL 425
Query: 368 PYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCR 427
P ++ NL+L V+DEAH Y G FG H A +LRR+ R
Sbjct: 426 PNANRWYYFFKNLKLF-------------------VLDEAHVYNGIFGVHVAFVLRRMRR 466
Query: 428 LCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLR 487
+ + S FV +AT +P +H ++ + ++LI SP K FV+WNP
Sbjct: 467 IAEYFGNSQYRFVSCSATIEDPLQHMKKIFGVDNIKLINYTSSPSGSKKFVMWNPPYV-- 524
Query: 488 SVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTRE 547
D ++ + S ISE S L + + +R I FCR RK CE ++ R+
Sbjct: 525 -----------DPKHPDDGKKSAISEASKLLIKFAEKRVRTIVFCRVRKTCESLMRLVRQ 573
Query: 548 ILE-ETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTL 606
L+ + L+ I YRAGY ++RR+IE + F GKL G+ ATNALELGID+G +D +
Sbjct: 574 ELKTKQKGDLLSKIQSYRAGYTVQERRKIESEMFNGKLYGIIATNALELGIDIGSLDAVI 633
Query: 607 HLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQ 666
+GFP S+++L QQ GR+GRR + SLAVY+ P+DQ+++K+P + P +D
Sbjct: 634 TIGFPYSLSNLRQQFGRAGRRNKSSLAVYIVETFPVDQFYLKHPILIHTQPNAELTLDLT 693
Query: 667 NHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFE-- 724
N +L HL CAA E P+++ DEK+FG+ + +++ ++ E
Sbjct: 694 NEVLLASHLQCAAYELPINIRSDEKFFGNQIQD---------------ICEANLEMVEES 738
Query: 725 YIGHEK---MPSHTISIRAIESERYEVIDMQS--NEVLEEIEESKAFFQVYEGAVYMHQG 779
Y H K P+ + IR++ + + ++D+ + N +LE +E + YEGAVY++QG
Sbjct: 739 YRPHPKYLPFPASQVRIRSVSEDMFTLVDVTNDKNVILELLEPFRVALTAYEGAVYVYQG 798
Query: 780 HTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQAL 839
T++++ LN++ +I + D+++ T RD+TD+ + + + K T
Sbjct: 799 KTFIIRLLNINKRIITAHQVDVEWSTLQRDFTDV------DPVRSLMKKTMHGSTNIYFG 852
Query: 840 ACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVE-QNFSFRS 898
A T FG++++ + I+ D V++ +S+ WI VP + V+ + + +
Sbjct: 853 AVKATLHVFGYFKVNKQKDIL-DVVDITDHPVEIDSRGFWIDVPWHIIEVLSLKKINGAA 911
Query: 899 GLHAASHALLHVVPIYVRCNFSDLAPEC-------PNPHDSRYFPERILLYDRHPGGTG 950
+HAA HALL ++PI++ + +D+ EC R P R++ YD +G
Sbjct: 912 SIHAAQHALLSLMPIFISNSGNDIRTECKAGEKEYKEAKSERRRPSRLIFYDNCGDSSG 970
>gi|375292215|ref|YP_005126754.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae INCA 402]
gi|371581886|gb|AEX45552.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae INCA 402]
Length = 778
Score = 400 bits (1029), Expect = e-108, Method: Compositional matrix adjust.
Identities = 250/738 (33%), Positives = 373/738 (50%), Gaps = 60/738 (8%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
H+E+I R A + P + L+ GI++LYSHQA++ + G NVVVAT TSS
Sbjct: 31 HIENIPPRSARYLPWPAWTAPELQQELERRGIAQLYSHQAQAADLAWTGTNVVVATGTSS 90
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFD--ASIDIGVYDGD 339
GKSL Y LP+L A+S D + ALY+ PTKAL DQL ++++ + D A + YDGD
Sbjct: 91 GKSLSYLLPILSAMSQDPQACALYLTPTKALGSDQLAHVMSLVGSTDTLAGVHPAPYDGD 150
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T R +R+ +R + +NPDMLH ILP H +++R F +
Sbjct: 151 TPADARAGIREQSRFVFSNPDMLHAGILPNHQRWARF-------------------FRHL 191
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
RF+VIDE H+Y+G FG AL++RRL RL + YGS P+ + ++ATS +P H L
Sbjct: 192 RFIVIDECHSYRGVFGAGVALVIRRLLRLAAR-YGSTPTVMLASATSNDPAAHASTLIGQ 250
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
+ + + DG+P + +LW P D + N A + +E + + A
Sbjct: 251 PVVAVTE-DGAPTGARTVMLWEP----------GFVDGAEGENGAPIRRAASTESAGIMA 299
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LVDSICVYRAGYVAEDRRRIERD 578
++ G R + F RSR+ E+V E L H + YRAGY+AEDRR +ER
Sbjct: 300 TLIAAGARTLTFVRSRRQAEVVALRCAEELACHGRHDFASRVAAYRAGYLAEDRRALERK 359
Query: 579 FFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAF 638
G L GVA+TNALELGID+G +D + G+PG++AS WQQAGR+GRR + SL VA
Sbjct: 360 LDDGTLLGVASTNALELGIDIGGLDAVVTAGYPGTVASFWQQAGRAGRRGQGSLVTLVAR 419
Query: 639 EGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLS 698
+ P+D Y + +PE L P+E D N +L HL CAA E PL+ + ++
Sbjct: 420 DDPMDTYLVHHPEALLGRPMEKIVFDPHNPHILSGHLYCAAAESPLTEAEIDALNAREVA 479
Query: 699 SGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHT-ISIRAIESERYEVIDMQSNEVL 757
L N GYL P+ F + P+H+ +S+R ++D +L
Sbjct: 480 Q---QLANDGYLRHRPT-----GWFAVEQPGQPPAHSLVSLRG-SGHHVAIVDRSDGRLL 530
Query: 758 EEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSG 817
I+ ++A QV+ GAVY+HQG T++++EL+ +A+ + D + F R TDI + G
Sbjct: 531 GTIDSARAASQVHPGAVYLHQGETFVIEELDDQVALAVPDQPDYQTF--ARSTTDIRIVG 588
Query: 818 GNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQA 877
+ ++ L VT G Y + G + V L +P + ++A
Sbjct: 589 EVDKVCNPAPGLWVSN-----LVVEVTDRVVG-YTMKASDGSVLALVPLQMPPQTLVTRA 642
Query: 878 VWIQVPQSVKAVVEQNFSFR---SGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRY 934
V +V +V + LHAA HA + ++P+ C+ D+ H
Sbjct: 643 ----VAYTVDPLVLDSLGITDVPGALHAAEHAAIGLLPLIATCDRWDIGGVSTAEHPDTG 698
Query: 935 FPERILLYDRHPGGTGVS 952
P + +YD HPGG G +
Sbjct: 699 LPT-VFVYDGHPGGAGFA 715
>gi|429200733|ref|ZP_19192406.1| putative DEAH-box helicase [Streptomyces ipomoeae 91-03]
gi|428663574|gb|EKX62924.1| putative DEAH-box helicase [Streptomyces ipomoeae 91-03]
Length = 831
Score = 400 bits (1028), Expect = e-108, Method: Compositional matrix adjust.
Identities = 264/786 (33%), Positives = 396/786 (50%), Gaps = 64/786 (8%)
Query: 186 SSSHSFQRRCSDKS-QLLPLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNT 244
+ +H R +D + P +++ L G ++ H E + R+ PD +
Sbjct: 4 AKNHQSDRSSTDTAPSPSPGTVLDRLASGPSRASRITHTEHVPPREGRHAVWPDRIRAEV 63
Query: 245 KSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL------SHD 298
+A+++ GI +SHQA +L G +VVVAT T+SGKSL Y +PVL L +
Sbjct: 64 IAAVQAAGIEHPWSHQARVAEHALDGDSVVVATGTASGKSLAYLVPVLSRLLDGAEAPNG 123
Query: 299 LSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITN 358
++ALY+ PTKALA DQ R++ +++ + VYDGDT ++R W+R A ++TN
Sbjct: 124 RGTTALYLAPTKALAADQRRSVKEISQPLGNVVRPAVYDGDTPVEEREWIRQYANYVLTN 183
Query: 359 PDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHT 418
PDMLH ILP H ++S L L+ +VVIDE H Y+G FG H
Sbjct: 184 PDMLHRGILPSHPRWSSFLRALK-------------------YVVIDECHTYRGVFGSHV 224
Query: 419 ALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFV 478
A +LRRL RLC+ YG+DP F+ ++AT+A P L L +E + +D SP + +F
Sbjct: 225 AQVLRRLRRLCAR-YGADPVFLLASATAAEPSVAASRLTGLPVVE-VADDASPRGELVFA 282
Query: 479 LWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLC 538
LW P T++ + A + ++ +E + L ++V G+R +AF RSR+
Sbjct: 283 LWEP----------PLTELHSEKGAPVRRTA-TAETAELLTDLVLQGVRSVAFVRSRRGA 331
Query: 539 ELVLSYTREILEET--------APHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAAT 590
EL+ +E L A L + YR GY+ E+RR +ER G+L G+AAT
Sbjct: 332 ELISVIAQERLATVTSAADAAGARSLARRVAAYRGGYLPEERRALERALHSGELLGLAAT 391
Query: 591 NALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYP 650
ALELG+DV +D L G+PG+ ASLWQQAGR+GR R +LAV VA + PLD + + +P
Sbjct: 392 TALELGVDVSGLDAVLIAGYPGTRASLWQQAGRAGRSGRGALAVLVARDDPLDTFLVHHP 451
Query: 651 EKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYL 710
E LF P+E +D N VL HL AA E PL+ D + FG S + L+ L
Sbjct: 452 EALFDRPVESTVLDPDNPYVLAPHLCAAAAELPLT-DEDLELFGPECESLLPQLEAAKLL 510
Query: 711 SSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVY 770
AK + + E+ T IR ++++ + +L ++ A V+
Sbjct: 511 R------RRAKAWHWTRRERAADLT-DIRGQGGRPVQIVEAGTGRLLGTVDAGAAHTTVH 563
Query: 771 EGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQ 830
EGAV++HQG TYLV+EL L +AL ++AD Y T RD T I V + +
Sbjct: 564 EGAVHLHQGRTYLVRELALEDSVALVEQADPPYSTVARDTTSISVLETDTEI--PWGDGR 621
Query: 831 LTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVV 890
L + + VT F R +G + +L LP + ++AVW V +
Sbjct: 622 LCYGSVE-----VTNQVVSFLRRRLITGEVLGETKLDLPPRTLRTRAVWWTVTEDQLDAA 676
Query: 891 EQNFSFRSG-LHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGT 949
+ G LHAA HA + ++P++ C+ D+ H P + +YD HPGG
Sbjct: 677 RISPEILGGSLHAAEHASIGMLPLFATCDRWDIGGVSVPLHPDTLLPT-VFVYDGHPGGA 735
Query: 950 GVSKQV 955
G +++
Sbjct: 736 GFAERA 741
>gi|383820350|ref|ZP_09975607.1| helicase/secretion DEAH-box helicase [Mycobacterium phlei
RIVM601174]
gi|383335352|gb|EID13783.1| helicase/secretion DEAH-box helicase [Mycobacterium phlei
RIVM601174]
Length = 775
Score = 400 bits (1028), Expect = e-108, Method: Compositional matrix adjust.
Identities = 257/753 (34%), Positives = 381/753 (50%), Gaps = 67/753 (8%)
Query: 213 GIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKN 272
G G + HV D+ R P + A GI +SHQ E+ + +G++
Sbjct: 17 GRGGPDPLRHVADLPPRPGRPGSWPRWADPDVVRAFLDRGIEAPWSHQLEAAELAHSGRH 76
Query: 273 VVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFD-ASI 331
VVV+T T+SGKSL Y LP+L AL D + LY+ PTKAL DQLR +A+T+A +
Sbjct: 77 VVVSTGTASGKSLAYQLPILTALKSDSRARVLYLSPTKALGHDQLRNAVALTEAVPLPDV 136
Query: 332 DIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTE 391
YDGD+ R + R+ +R + +NPDM+H+S+L H +++ L NLR
Sbjct: 137 APCAYDGDSPTDVRRFARERSRWIFSNPDMIHLSLLRNHARWAVFLRNLR---------- 186
Query: 392 VYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSD--PSFVFSTATSANP 449
+VV+DE H Y+G FG + A++LRRL RLC+ + P+ +F++AT+A+P
Sbjct: 187 ---------YVVVDECHYYRGIFGSNVAMVLRRLLRLCARYSPTAGMPTVIFASATTASP 237
Query: 450 REHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSS 509
E EL + +E+ + DGSP + LW P L ++ + N A S
Sbjct: 238 AETASELIGQTVVEVTE-DGSPQGARTVALWEP-PLLDELVGE---------NGAPVRRS 286
Query: 510 PISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVA 569
+E + + A++V G R + F RSR+ EL R LEE AP L D + YRAGY+A
Sbjct: 287 AGAEAAGVMADLVAEGARMLTFVRSRRGAELTALAARARLEEIAPELADKVASYRAGYLA 346
Query: 570 EDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRER 629
EDRR +ER G+L G+A TNALELG+D+ +D + GFPG++ S WQQAGR GRR +
Sbjct: 347 EDRRELERALVDGELRGLATTNALELGVDIAGLDAVVLAGFPGTVTSFWQQAGRCGRRGQ 406
Query: 630 PSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLS---- 685
+L V +A + PLD Y + +P L PIE ID N VL L+CAA E PL+
Sbjct: 407 SALIVLIARDDPLDTYLVHHPAALLDGPIERVVIDPTNPYVLGPQLLCAAAELPLTDAEV 466
Query: 686 -LIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESE 744
+ E + G+ + GY S P LD P + IR
Sbjct: 467 RMWNAEAVADELVDDGLLRRRPAGYFPS-PGLD--------------PHPAVDIRGASGG 511
Query: 745 RYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYF 804
+ +++ + +L +A V+ GAVY+HQG TYLV L+ +A +AD Y
Sbjct: 512 QIAILEAGTGRMLGSTGAGQAPSSVHPGAVYLHQGETYLVDSLDFEDGVAFVHEADPGYT 571
Query: 805 TKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTV 864
T R+ TDI V+G + + T + +VT T G+ R + SG + D V
Sbjct: 572 TSARELTDIAVTG-------EGERRTFGPVTVGLVPVSVTNTVIGYLRR-QLSGEVIDFV 623
Query: 865 ELYLPKYSYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLA 923
EL +P + ++ AV + P++++ LHAA HA + ++P+ C+ D+
Sbjct: 624 ELDMPTRTLDTMAVMCTITPEALEHNGIDLLHLPGALHAAEHAAIGLLPLVASCDRGDIG 683
Query: 924 --PECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
P D P I +YD +PGG G++ +
Sbjct: 684 GVSTAVGPVDG--LPT-IFVYDGYPGGAGIADR 713
>gi|288556205|ref|YP_003428140.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
gi|288547365|gb|ADC51248.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
Length = 768
Score = 400 bits (1028), Expect = e-108, Method: Compositional matrix adjust.
Identities = 248/746 (33%), Positives = 392/746 (52%), Gaps = 77/746 (10%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
H E+I A +AV P + + + +L+ GI +LYSHQ E+I + G+N+ T T+S
Sbjct: 25 HWEEIEAVEAVTKPFPSFIDERIQMSLRKRGIGELYSHQYEAINLAHQGENITAVTPTAS 84
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTT 341
GK+LCYN+PVL+ + +D S ALY+FPTKALAQDQ + + + + YDGDT
Sbjct: 85 GKTLCYNIPVLQEIINDNESRALYIFPTKALAQDQKSEMNELIEEMGVDVKCFTYDGDTA 144
Query: 342 QKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRF 401
R +R ++ITNPDMLH +ILP+H ++ NL ++
Sbjct: 145 PTIRQAVRKAGHVVITNPDMLHSAILPHHTKWVAFFENL-------------------KY 185
Query: 402 VVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLST 461
V+IDE H Y+G FG H A ++RRL R+ ++ YG P+F+ ++AT ANP+E EL +
Sbjct: 186 VIIDELHTYRGVFGSHVANVIRRLKRIAAY-YGCYPTFICTSATIANPKELAEELTGVP- 243
Query: 462 LELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEM 521
+ L+ +G+P +K F+ +NP ++N+ A N S +EV+ L A+
Sbjct: 244 MRLVDKNGAPRGKKHFIFYNP-----PIVNE----------ALNIRKSATAEVNDLAAKF 288
Query: 522 VQHGLRCIAFCRSRKLCELVLSYTREILEET-APHLVDSICVYRAGYVAEDRRRIERDFF 580
+++ ++ I F +SR E++LS+ +E++++ P D+I YR GY+ + RR IER
Sbjct: 289 LKNKIQTIVFAKSRVRVEIILSHLQELIKKNLGP---DTIRGYRGGYLPKQRREIERGLR 345
Query: 581 GGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEG 640
G + GV +TNALELG+D+G + V + G+PGSIAS WQQAGR+GRR+ S+ + VA
Sbjct: 346 QGNIIGVVSTNALELGVDIGQLQVCIMTGYPGSIASAWQQAGRAGRRQNESVIIMVAGST 405
Query: 641 PLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLS-S 699
P+DQY +++P+ F+ E I+ N +L HL CA+ E P F G +
Sbjct: 406 PIDQYVIQHPDYFFERSPESARINPDNLVILVDHLKCASYELP---------FKKGETFD 456
Query: 700 GITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN----E 755
G+ + +L+ + L A + Y ++ P+H IS+R+ E +ID QS+
Sbjct: 457 GVEVEEVLEFLTEEQVLHHRADKW-YWMNDAFPAHGISLRSASQENVIIID-QSDVAHPT 514
Query: 756 VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHV 815
V+ E++ A +++ A+Y+HQG Y V+ L+ K A ++ ++YFT + V
Sbjct: 515 VIGEMDRFSAMTLLHDEAIYLHQGIQYQVEYLDWDEKKAFVREVAVEYFTDANLAVQLKV 574
Query: 816 ----SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKY 871
YA D + A +T+ GSG I +LP+
Sbjct: 575 LEEDEKKRKEYAEVSFGDVMVNAKATIFKKIKLSTFENI-----GSGPI------HLPEE 623
Query: 872 SYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDL--APECPNP 929
+ A+W+ + + +F L +H HV P++V C+ SDL P+
Sbjct: 624 ELHTNAMWLSFSNELVEEYSEG-AFDQALIGLAHLFQHVAPVFVMCDRSDLHVIPQMKAD 682
Query: 930 HDSRYFPERILLYDRHPGGTGVSKQV 955
H I +YDR+PGG G+SK+V
Sbjct: 683 HSE---APTIFIYDRYPGGIGLSKEV 705
>gi|376247601|ref|YP_005139545.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae HC04]
gi|376250419|ref|YP_005137300.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae HC03]
gi|376256237|ref|YP_005144128.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae VA01]
gi|372111923|gb|AEX77982.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae HC03]
gi|372114169|gb|AEX80227.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae HC04]
gi|372118754|gb|AEX82488.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae VA01]
Length = 778
Score = 400 bits (1028), Expect = e-108, Method: Compositional matrix adjust.
Identities = 251/738 (34%), Positives = 373/738 (50%), Gaps = 60/738 (8%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
H+E+I R A + P + L+ GI++LYSHQA++ + G NVVVAT TSS
Sbjct: 31 HIENIPPRSARYLPWPAWTAPELQRELERRGIAQLYSHQAQAADLAWTGTNVVVATGTSS 90
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFD--ASIDIGVYDGD 339
GKSL Y LP+L A+S D + ALY+ PTKAL DQL ++++ + D A + YDGD
Sbjct: 91 GKSLSYLLPILSAMSQDPQACALYLTPTKALGSDQLAHVMSLVGSTDTLAEVYPAPYDGD 150
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T R +R+ +R + +NPDMLH ILP H +++R F +
Sbjct: 151 TPTDARAGIREQSRFVFSNPDMLHAGILPNHHRWARF-------------------FRHL 191
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
RF+VIDE H+Y+G FG AL++RRL RL + YGS P+ + ++ATS +P H L
Sbjct: 192 RFIVIDECHSYRGVFGAGVALVIRRLLRLAAR-YGSTPTVMLASATSNDPAAHASTLIGQ 250
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
+ + + DG+P + +LW P D + N A + +E + + A
Sbjct: 251 PVVAVTE-DGAPTGARTVMLWEP----------GFVDGVEGENGAPIRRATSTESAGIMA 299
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LVDSICVYRAGYVAEDRRRIERD 578
++ G R + F RSR+ E+V E L H + YRAGY+AEDRR +ER
Sbjct: 300 TLIAAGARTLTFVRSRRQAEVVALRCAEELAYHGRHEFASRVAAYRAGYLAEDRRALERK 359
Query: 579 FFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAF 638
G L GVA+TNALELGIDVG +D + G+PG++AS WQQAGR+GRR + SL VA
Sbjct: 360 LDNGTLLGVASTNALELGIDVGGLDAVVTAGYPGTVASFWQQAGRAGRRGQGSLVTLVAR 419
Query: 639 EGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLS 698
+ P+D Y + +PE L P+E D N +L HL CAA E PL+ + ++
Sbjct: 420 DDPMDTYLVHHPEALLGRPMEKIVFDPHNPHILSGHLYCAAAESPLTEAEIDALNAREVA 479
Query: 699 SGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHT-ISIRAIESERYEVIDMQSNEVL 757
L N GYL P+ F + P+H+ +S+R ++D +L
Sbjct: 480 Q---QLANDGYLRHRPT-----GWFAVEQPGQPPAHSLVSLRG-SGHHVAIVDRSDGRLL 530
Query: 758 EEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSG 817
I+ ++A QV+ GAVY+HQG T++++EL+ +A+ + D + F R TDI + G
Sbjct: 531 GTIDSARAASQVHPGAVYLHQGETFVIEELDDQVALAVPDQPDYQTF--ARSTTDIRIVG 588
Query: 818 GNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQA 877
+ ++ L VT G Y + G + V L +P + ++A
Sbjct: 589 EVDKVCNPAPGLWVSN-----LVVEVTDRVVG-YTMKASDGSVLAMVPLQMPPQTLVTRA 642
Query: 878 VWIQVPQSVKAVVEQNFSFR---SGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRY 934
V +V +V + LHAA HA + ++P+ C+ D+ H
Sbjct: 643 ----VAYTVDPLVLDSLGITDVPGALHAAEHAAIGLLPLIATCDRWDIGGVSTAEHPDTG 698
Query: 935 FPERILLYDRHPGGTGVS 952
P + +YD HPGG G +
Sbjct: 699 LPT-VFVYDGHPGGAGFA 715
>gi|410453922|ref|ZP_11307865.1| ATP-dependent RNA helicase yprA [Bacillus bataviensis LMG 21833]
gi|409932602|gb|EKN69560.1| ATP-dependent RNA helicase yprA [Bacillus bataviensis LMG 21833]
Length = 767
Score = 400 bits (1028), Expect = e-108, Method: Compositional matrix adjust.
Identities = 245/736 (33%), Positives = 387/736 (52%), Gaps = 66/736 (8%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
I + A + P+ L AL+S GI KLY+HQ + G ++V T T+SGK+L
Sbjct: 30 IEEKPAEEMSFPEDLHPVLIKALQSKGIEKLYTHQQSAYEKITNGNSIVAVTPTASGKTL 89
Query: 286 CYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDR 345
CYNLPVL+ + + S ALYMFPTKALAQDQ + + +A I+ YDGDT R
Sbjct: 90 CYNLPVLQTILANPESRALYMFPTKALAQDQKSEINEIIQAAGVEINSYTYDGDTPANIR 149
Query: 346 MWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVID 405
+R ++ITNPDMLH +ILP+H ++ + NL +FVVID
Sbjct: 150 QRVRQAGHVVITNPDMLHSAILPHHTKWVSLFENL-------------------KFVVID 190
Query: 406 EAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELI 465
E H Y+G FG H A ++RRL R+C H YGS+P F+ ++AT ANP EH E+ + LI
Sbjct: 191 ELHTYRGVFGSHVANVIRRLKRIC-HYYGSNPVFICTSATIANPLEHA-EILTEEKMCLI 248
Query: 466 QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHG 525
N+G+P K F+ +NP ++NK N S EV + E++++
Sbjct: 249 DNNGAPSGTKHFLFYNP-----PIVNK----------PLNIRRSATLEVRKIAGELLKNK 293
Query: 526 LRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLC 585
++ I F RSR E++L+Y +E+++ SI YR GY+ +RR+IE+ G +
Sbjct: 294 IQTIIFARSRVRVEIILTYLQELVKNQLG--AKSIMGYRGGYLPTERRKIEKGLRSGDIY 351
Query: 586 GVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQY 645
GV +TNALELG+D+G + V + G+PG+I+S WQQAGR+GRR +L + VA PLDQY
Sbjct: 352 GVVSTNALELGVDIGQLQVCIMTGYPGTISSAWQQAGRAGRRHGEALVIMVASSSPLDQY 411
Query: 646 FMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLK 705
++ P+ F E I+ N +L H+ CAA E P L + FG+ + +
Sbjct: 412 IIQNPDYFFNKSPETARINPDNLIILIDHMKCAAYELPFKL---GEQFGNVEADELLE-- 466
Query: 706 NRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN----EVLEEIE 761
YL+ + L + + Y ++ P+H IS+R+ E ++D QS+ +V+ E++
Sbjct: 467 ---YLTEERVLYRNGDKW-YWMNDSFPAHNISLRSASQENVIIVD-QSDVANVKVIGEMD 521
Query: 762 ESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNA 821
A +++ A+Y+HQG + V++L+ K A ++ D+ YFT + V +
Sbjct: 522 RFSAMTLLHDEAIYLHQGTQFQVEKLDWEEKKAFVREVDVDYFTDANLAVQLKVLEEDKL 581
Query: 822 YATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQ 881
+ ++ + +A+A F + GSG I +LP+ + A WI
Sbjct: 582 QSMVEAEIGYGDVSVRAMATIFKKIKFETHENI-GSGPI------HLPEEELHTNAAWIS 634
Query: 882 VPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDL--APECPNPHDSRYFPERI 939
+ + + + + GL +HAL H+ P++V + D+ P+ H+ + +
Sbjct: 635 LNKPLTELGHER--LEQGLVGTAHALNHIAPLFVMADPQDIHVIPQVKADHNEK---PSV 689
Query: 940 LLYDRHPGGTGVSKQV 955
YDR+PGG G+S+++
Sbjct: 690 FFYDRYPGGIGLSEKI 705
>gi|29831156|ref|NP_825790.1| ATP-dependent RNA helicase [Streptomyces avermitilis MA-4680]
gi|29608270|dbj|BAC72325.1| putative ATP-dependent RNA helicase [Streptomyces avermitilis
MA-4680]
Length = 835
Score = 400 bits (1027), Expect = e-108, Method: Compositional matrix adjust.
Identities = 253/759 (33%), Positives = 388/759 (51%), Gaps = 55/759 (7%)
Query: 203 PLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAE 262
P +++ L G ++ H E + R+ PD + +A+++ GI ++HQA
Sbjct: 47 PGTVLDRLASGPSRASRITHTEHLPPREGRHAVWPDRIRSEVIAAVQAAGIEHPWAHQAR 106
Query: 263 SIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL------SHDLSSSALYMFPTKALAQDQ 316
+ +L G++VVVAT T+SGKSL Y +P L AL + ++ALY+ PTKALA DQ
Sbjct: 107 AAEHALDGESVVVATGTASGKSLAYLVPALSALLDGSEAPNGRGATALYLAPTKALAADQ 166
Query: 317 LRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRI 376
R++ +++ ++ VYDGDT ++R W+R A ++TNPDMLH ILP H ++S
Sbjct: 167 CRSVKELSQPLGTAVRPAVYDGDTPVEEREWVRQYANYVLTNPDMLHRGILPAHPRWSSF 226
Query: 377 LSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSD 436
L LR +VVIDE H Y+G FG H A +LRRL RLC+ YG+
Sbjct: 227 LRALR-------------------YVVIDECHTYRGVFGSHVAQVLRRLRRLCAR-YGAS 266
Query: 437 PSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTD 496
P F+ ++AT+A P L L +E + +D SP + +F LW P T+
Sbjct: 267 PVFLLASATAAEPSVAASRLTGLRVVE-VADDASPRGELVFALWEP----------PLTE 315
Query: 497 MDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHL 556
+ + A + ++ +E + L ++ G+R +AF RSR+ EL+ +E L E L
Sbjct: 316 LHGEKGAPVRRTA-TAETADLLTDLTLQGVRSVAFVRSRRGAELIAVIAQERLAEIDRSL 374
Query: 557 VDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIAS 616
+ YR GY+ E+RR +ER G+L G+AAT ALELG+DV +D + G+PG+ AS
Sbjct: 375 ARRVAAYRGGYLPEERRALERALHSGELLGLAATTALELGVDVSGLDAVVIAGYPGTRAS 434
Query: 617 LWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLV 676
LWQQAGR+GR + +LA+ VA + PLD + + +PE LF P+E +D N VL HL
Sbjct: 435 LWQQAGRAGRSGQGALAILVARDDPLDTFLVHHPEALFDQPVESTVLDPDNPYVLAPHLC 494
Query: 677 CAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTI 736
AA E PL + D FG + + L+ L K + + E+ T
Sbjct: 495 AAAEELPL-VEEDLALFGPSTADLLPQLEAAKLLR------RRTKAWHWTRRERAADLT- 546
Query: 737 SIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALC 796
IR ++++ + +L ++ A V+EGAV++HQG TYLV+EL+L +AL
Sbjct: 547 DIRGEGGRPVQIVEAGTGRLLGTVDAGAAHTTVHEGAVHLHQGRTYLVRELDLEDSVALV 606
Query: 797 QKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRG 856
++A+ Y T RD T I V + +L + + VT F R
Sbjct: 607 EEANPSYSTVARDTTAISVL--ETDVEVPWGEGRLCYGSVE-----VTNQVVSFLRRRLI 659
Query: 857 SGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSG-LHAASHALLHVVPIYV 915
+G + +L LP + ++AVW V + G LHAA HA + ++P++
Sbjct: 660 TGEVLGETKLDLPPRTLRTRAVWWTVTEDQLDAARITPEILGGALHAAEHASIGMLPLFA 719
Query: 916 RCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
C+ D+ H P + +YD HPGG G +++
Sbjct: 720 TCDRWDIGGVSVPLHPDTLLPT-VFVYDGHPGGAGFAER 757
>gi|358461364|ref|ZP_09171529.1| helicase/secretion neighborhood putative DEAH-box helicase [Frankia
sp. CN3]
gi|357073442|gb|EHI82947.1| helicase/secretion neighborhood putative DEAH-box helicase [Frankia
sp. CN3]
Length = 811
Score = 400 bits (1027), Expect = e-108, Method: Compositional matrix adjust.
Identities = 265/775 (34%), Positives = 389/775 (50%), Gaps = 86/775 (11%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+ HVE + AR V+ P+ L+S G++ +SHQ + A+ AG++VV+AT T
Sbjct: 23 VTHVERVPARAGTAVDWPEWADPLLLGRLRSAGVTAPWSHQVAAAGAAFAGRSVVLATGT 82
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL--LAMTKAFDASIDIGVYD 337
+SGKSL Y LPVL L D S+ ALY+ PTKALA DQLRA+ LA+T AS YD
Sbjct: 83 ASGKSLGYLLPVLTTLLGDPSARALYLAPTKALAHDQLRAVRSLALTAVRAAS-----YD 137
Query: 338 GDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFL 397
GDT +R W+R +A ++TNPDMLH ILP H +F L LR
Sbjct: 138 GDTPTGEREWVRAHATFVLTNPDMLHRGILPGHRRFGPFLRGLR---------------- 181
Query: 398 FIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELA 457
+VVIDE H Y+G FG H A +LRRL R+C+ YGS+P FV ++AT A+P L
Sbjct: 182 ---YVVIDECHGYRGVFGAHVAQVLRRLRRVCAR-YGSNPVFVLASATVADPGVAASRLT 237
Query: 458 NLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNA-------------- 503
L ++++ DGSP FVL+ P L + D R A
Sbjct: 238 GLD-VDVVDEDGSPRGATDFVLYEPPLFLTG--GRPPAAAVDGRMAMVAEGAEGGEFADG 294
Query: 504 -----------------ANKTSSPI-----SEVSYLFAEMVQHGLRCIAFCRSRKLCELV 541
A + +P+ +E + L A++V G+R + F RSR+ E+V
Sbjct: 295 VEVAEGGGDAEGGGDLGAGENGAPVRRSATAESADLLADLVADGVRTLVFVRSRRAAEVV 354
Query: 542 LSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGH 601
+ R L AP L + + YRAGY+AE+RR +E G L GVAAT+ALELG+D+
Sbjct: 355 ANSARRALGLVAPELGERVAAYRAGYLAEERRELEARLRSGDLLGVAATSALELGVDISG 414
Query: 602 IDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECC 661
+D T+ G+PG++ASL QQAGR+GR + +LAV VA + PLD Y + +PE +F P+E
Sbjct: 415 LDATVIAGYPGTLASLRQQAGRAGRSGQGALAVLVARDDPLDTYLVHHPEAVFGRPVEAT 474
Query: 662 HIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAK 721
D N VL L CAA E P++ D + FG + L RG L P+
Sbjct: 475 VFDPDNPYVLGPQLECAAAELPVT-DSDLELFGPAARPVLDDLVRRGRLRRRPA------ 527
Query: 722 IFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHT 781
Y P + IR + +++ + +L ++ + + V+ GAVY+HQG +
Sbjct: 528 -GWYWTQRGRPD--VDIRGVGGPPVRIVEADTGRLLGTVDAATSHSTVHSGAVYLHQGVS 584
Query: 782 YLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALAC 841
++V+EL+L +A +A + T RD+TDI + A + +D
Sbjct: 585 FVVEELDLEESVAFAAQAAPDWTTTARDHTDIRIV--EQTRARVVDRDLAVYFG----TV 638
Query: 842 TVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVE-QNFSFRSGL 900
VT+ G+ R +G + V L LP ++ VW V + A + +
Sbjct: 639 EVTSQVVGYQRRLITTGEVLGDVPLDLPPRHLRTRGVWYVVSDGLLADAGVKRADVPGAV 698
Query: 901 HAASHALLHVVPIYVRCNFSDLAPECPNPH-DSRYFPERILLYDRHPGGTGVSKQ 954
HAA HA + ++P++ C+ D+ H D+ + +YD HPGG G +++
Sbjct: 699 HAAEHAAIGLLPLFATCDRWDIGGVSTALHPDTEQ--TTVFVYDGHPGGAGFAER 751
>gi|297193029|ref|ZP_06910427.1| ATP-dependent RNA helicase [Streptomyces pristinaespiralis ATCC
25486]
gi|297151616|gb|EDY63749.2| ATP-dependent RNA helicase [Streptomyces pristinaespiralis ATCC
25486]
Length = 827
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 258/759 (33%), Positives = 384/759 (50%), Gaps = 55/759 (7%)
Query: 203 PLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAE 262
P +++ L G ++ H E + R PD + SA++ GI ++HQA
Sbjct: 47 PSTVLDRLAAGASRAARITHTEHLPPRPGRHAVWPDRIRAEVISAVRDAGIEHPWAHQAT 106
Query: 263 SIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL------SHDLSSSALYMFPTKALAQDQ 316
+ +L G++VV+AT T+SGKSL Y PVL L ++ ++ALY+ PTKALA DQ
Sbjct: 107 AAEHALDGESVVIATGTASGKSLAYLAPVLSTLLDGAEAANGRGTTALYLAPTKALAADQ 166
Query: 317 LRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRI 376
R++ + I VYDGDT ++R W+R A ++TNPDMLH ILP H ++S
Sbjct: 167 RRSVKELAAPLGNRIRPAVYDGDTPVEEREWVRQYANYVLTNPDMLHRGILPAHPRWSSF 226
Query: 377 LSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSD 436
L +LR +VVIDE H Y+G FG H A +LRRL RLC+ YG++
Sbjct: 227 LRSLR-------------------YVVIDECHTYRGVFGSHVAQVLRRLRRLCAR-YGAN 266
Query: 437 PSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTD 496
P F+ ++ATSA P L L E + +D SP + +F LW P T+
Sbjct: 267 PVFLLASATSAEPAVSAGRLTGLPVHE-VADDASPRGELVFALWEP----------PLTE 315
Query: 497 MDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHL 556
+ + A + ++ +E + L ++ G+R +AF RSR+ EL+ +E L E L
Sbjct: 316 LQGEKGAPVRRTA-TAETADLLTDLTVQGVRSVAFVRSRRGAELISVIAKERLAEVDRSL 374
Query: 557 VDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIAS 616
+ YR GY+ E+RR +ER G+L G+AAT ALELG+DV +D + G+PG+ AS
Sbjct: 375 PRRVAAYRGGYLPEERRALERALHSGELLGLAATTALELGVDVAGLDAVVIAGYPGTRAS 434
Query: 617 LWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLV 676
LWQQAGR+GR +LAV VA + PLD Y + +PE LF P+E +D N VL HL
Sbjct: 435 LWQQAGRAGRSAEGALAVLVARDDPLDTYLVHHPEALFDRPVESTVLDPDNPYVLAPHLC 494
Query: 677 CAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTI 736
AA E PL+ D + FG G + + L+ L A + + E+ T
Sbjct: 495 AAAAELPLTEP-DLELFGPGAADLMPQLEAARLLR------RRASGWHWTRRERAADLT- 546
Query: 737 SIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALC 796
IR ++++ + +L ++E A V++GAV++HQG TYLV+ L L +AL
Sbjct: 547 DIRGGGGRPVQIVESATGRLLGTVDEGAAHTAVHDGAVHLHQGRTYLVERLVLEDSVALV 606
Query: 797 QKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRG 856
++A Y T RD T I V +L+ + + VT F R
Sbjct: 607 KEAGPPYSTTARDTTSISVL--ETDVEVPWGDGRLSYGSVE-----VTNQVVSFLRRRLI 659
Query: 857 SGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSG-LHAASHALLHVVPIYV 915
+G + +L LP + ++AVW V + N G LHAA HA + ++P++
Sbjct: 660 TGEVLGESKLDLPPRTLRTRAVWWTVTEDQLDAARVNPEQLGGALHAAEHASIGMLPLFA 719
Query: 916 RCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
C+ D+ H P + +YD HPGG G +++
Sbjct: 720 TCDRWDIGGVSVPLHPDTLLPT-VFVYDGHPGGAGFAER 757
>gi|302864948|ref|YP_003833585.1| hypothetical protein Micau_0442 [Micromonospora aurantiaca ATCC
27029]
gi|302567807|gb|ADL44009.1| Protein of unknown function DUF1998 [Micromonospora aurantiaca ATCC
27029]
Length = 831
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 256/739 (34%), Positives = 370/739 (50%), Gaps = 56/739 (7%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+ HVE + AR P + ++A G++ + HQAE+ + AG++VVVAT T
Sbjct: 28 VTHVERVPARAGEPAGWPGWAPEELRAAFARRGVTAPWRHQAEAAELAYAGRHVVVATGT 87
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGD 339
+SGKSL Y LP L L D ++ LY+ PTKALA DQLRA+ + D + YDGD
Sbjct: 88 ASGKSLAYQLPALSTLLADPRATVLYLAPTKALAADQLRAVAGLE--LD-GVRPATYDGD 144
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T + +R W+R ++R ++TNPDMLH +LP H +S L L
Sbjct: 145 TPRAEREWIRRHSRFVLTNPDMLHHGVLPGHAHWSGFLRRLA------------------ 186
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
+VV+DE H Y+G FG H A +LRRL R C+ +G P F+ ++ATS +P L L
Sbjct: 187 -YVVVDECHTYRGVFGSHVAHVLRRLRRQCAR-FGRTPVFLLASATSGDPAAAAERLTGL 244
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
+ + D SP F LW P L + D+ R +A + E + L A
Sbjct: 245 P-VTAVTEDTSPRGGVTFALWEP-PLLPPTDSSVDADLVQVRRSA------LRETADLLA 296
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDF 579
+ V G+R +AF RSR+ E+V + R L+E P L D + YRAGY+ E+RR +ER
Sbjct: 297 DSVVEGVRTLAFVRSRRGAEVVAANARRSLDEAVPGLGDRVAAYRAGYLREERRELERAL 356
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFE 639
G L G+A+TNALELG+D+ +D L G+PG+ ASLWQQAGR+GR +LAV VA +
Sbjct: 357 LHGDLLGLASTNALELGVDLVGLDAVLICGWPGTRASLWQQAGRAGRSGDEALAVLVARD 416
Query: 640 GPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSS 699
PLD Y + +PE LF P+E +D N VL L CAA E PL+ D FG G
Sbjct: 417 DPLDTYLVHHPEALFGRPVEATVLDPANPYVLAPQLACAAHESPLTPA-DLDLFGEGAKE 475
Query: 700 GITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEE 759
+ +L G L P+ Y H + P + +R V++ + +L
Sbjct: 476 AVDSLVEAGALRQRPT-------GWYWRHRERPE--VDLRGEGGAPVCVVEESTGRLLGT 526
Query: 760 IEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGN 819
++ A F ++ GAVY+HQG +Y+V L+L+ AL + + T RD T + V
Sbjct: 527 VDGGSAHFLLHTGAVYLHQGVSYVVDSLDLADGCALVHAEEPDWSTHARDVTSLSV---- 582
Query: 820 NAYATKISKDQLTKTTAQAL---ACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQ 876
+S L VT+ + R +G + DT L LP +
Sbjct: 583 ------VSVRSYVDAGPVGLFLGEVDVTSQVVSYQRRRIATGEVIDTRPLDLPARELRTV 636
Query: 877 AVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYF 935
AVW + P+S+ A + LHAA HA + ++P+ C+ D+ H
Sbjct: 637 AVWFTLSPESLTAAGVEAADVPGALHAAEHAAIGLLPLMATCDRWDIGGLSTALHPDTEA 696
Query: 936 PERILLYDRHPGGTGVSKQ 954
P + +YD HPGG G +++
Sbjct: 697 PT-VFVYDGHPGGAGFAER 714
>gi|21221969|ref|NP_627748.1| helicase [Streptomyces coelicolor A3(2)]
gi|4539568|emb|CAB38487.1| putative helicase [Streptomyces coelicolor A3(2)]
Length = 815
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 256/766 (33%), Positives = 385/766 (50%), Gaps = 69/766 (9%)
Query: 203 PLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAE 262
P +++ L G ++ H E + R PD + +A+++ GI ++HQA
Sbjct: 38 PGMLLDRLAAGPSRAARITHTEHLPPRAGRHAVWPDRIRPEVLAAVRAAGIEHPWAHQAR 97
Query: 263 SIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL------SHDLSSSALYMFPTKALAQDQ 316
+L G +VVVAT T+SGKSL Y +PVL AL + ++ LY+ PTKALA DQ
Sbjct: 98 VAEHALDGDSVVVATGTASGKSLAYLVPVLSALVDGSEAPNGRGATTLYLAPTKALAADQ 157
Query: 317 LRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRI 376
R++ +++ S+ VYDGDT ++R W+R ++TNPDMLH ILP H ++S
Sbjct: 158 CRSVKELSQPLGTSVRAAVYDGDTPFEEREWIRQYGTYVLTNPDMLHRGILPSHPRWSSF 217
Query: 377 LSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSD 436
L L+ +VVIDE H Y+G FG H A +LRRL RLC+ YG+
Sbjct: 218 LKALK-------------------YVVIDECHTYRGVFGSHVAQVLRRLRRLCAR-YGAS 257
Query: 437 PSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTD 496
P F+ ++AT+A P L L +E + +D SP + +F LW P T+
Sbjct: 258 PVFLLASATAAEPSVAARRLTGLPVIE-VADDASPRGELVFALWEP----------PLTE 306
Query: 497 MDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHL 556
++ + A + ++ +E + L ++ G+R I F RSR+ EL+ +E L E L
Sbjct: 307 LEGEKGAPVRRTA-TAEAADLLTDLTVQGMRSITFVRSRRGAELISVIAQERLAEVDRSL 365
Query: 557 VDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIAS 616
+ YR GY+ E+RR +ER G L G+AATNALELG+D+ +D + G+PG+ AS
Sbjct: 366 AGRVAAYRGGYLPEERRALERALHSGDLLGLAATNALELGLDISGLDAVVIAGYPGTRAS 425
Query: 617 LWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLV 676
LWQQAGR+GR + +LAV VA + PLD + + +PE LF P+E +D N VL HL
Sbjct: 426 LWQQAGRAGRAGQGALAVLVARDDPLDTFLVHHPEALFDQPVESTVLDPDNPYVLAPHLC 485
Query: 677 CAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTI 736
AA E PL+ D K FG + L+ L + + + E+ T
Sbjct: 486 AAAAELPLTE-EDLKLFGPACEELLPQLEAAKLLR------RRTRAWHWTRRERAADLT- 537
Query: 737 SIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALC 796
IR +V++ + +L ++ A V+EGAV++HQG TYLV+ L+L +AL
Sbjct: 538 DIRGEGGRPVQVVEEGTGRLLGTVDAGAAHTTVHEGAVHLHQGRTYLVRSLDLEDSVALV 597
Query: 797 QKADLKYFTKTRDY-------TDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFG 849
++A Y T RD TDI V G+ +L + + VT
Sbjct: 598 EQATPAYSTVARDTTAISVLETDIEVPWGDG---------RLCYGSVE-----VTNQVVS 643
Query: 850 FYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSG-LHAASHALL 908
F R +G + +L LP + ++AVW V + N G LHAA HA +
Sbjct: 644 FLRRRLITGEVLGETKLDLPPRTLRTRAVWWTVTEDQLDAARINPEILGGALHAAEHASI 703
Query: 909 HVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
++P++ C+ D+ H P + +YD HPGG G +++
Sbjct: 704 GMLPLFATCDRWDIGGVSVPLHPDTLLPT-VFVYDGHPGGAGFAER 748
>gi|297201346|ref|ZP_06918743.1| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083]
gi|297147858|gb|EDY56825.2| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083]
Length = 826
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 258/760 (33%), Positives = 386/760 (50%), Gaps = 55/760 (7%)
Query: 203 PLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAE 262
P +++ L G ++ H E + R PD + +A+++ GI ++HQA
Sbjct: 20 PSTVLDRLAAGPSRAARITHTEHLPPRAGRHAVWPDRIRSEVIAAVQACGIEHPWAHQAR 79
Query: 263 SIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL------SHDLSSSALYMFPTKALAQDQ 316
+ +L G++VVVAT T+SGKSL Y +PVL L + ++ LY+ PTKALA DQ
Sbjct: 80 AAEHALDGESVVVATGTASGKSLAYLVPVLSTLLDGSEAPNGRGATTLYLSPTKALAADQ 139
Query: 317 LRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRI 376
R++ +++ S+ VYDGDT ++R W+R A ++TNPDMLH ILP H ++S
Sbjct: 140 CRSVKELSQPLANSVRPAVYDGDTPFEEREWIRQYANYVLTNPDMLHRGILPSHARWSSF 199
Query: 377 LSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSD 436
L L+ +VVIDE H Y+G FG H A +LRRL RLC+ YG+
Sbjct: 200 LKALK-------------------YVVIDECHTYRGVFGSHVAQVLRRLRRLCAR-YGAS 239
Query: 437 PSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTD 496
P F+ ++AT+A P L L +E + +D SP + +F LW P T+
Sbjct: 240 PVFLLASATAAEPSVAARRLTGLPVVE-VADDASPRGELVFALWEP----------PLTE 288
Query: 497 MDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHL 556
M + A + ++ +E + L ++ G+R +AF RSR+ EL+ +E L E L
Sbjct: 289 MQGEKGAPVRRTA-TAETADLLTDLAVQGVRSVAFVRSRRGAELISVIAQERLAEVDRSL 347
Query: 557 VDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIAS 616
+ YR GY+ E+RR +E+ G+L G+AAT ALELGIDV +D L G+PG+ AS
Sbjct: 348 ARRVAAYRGGYLPEERRALEQALHSGELLGLAATTALELGIDVSGLDAVLISGYPGTRAS 407
Query: 617 LWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLV 676
LWQQAGR+GR + +LAV VA + PLD + + +PE LF P+E +D N VL HL
Sbjct: 408 LWQQAGRAGRAGQGALAVLVARDDPLDTFLVHHPEALFDQPVESTVLDPDNPYVLAPHLC 467
Query: 677 CAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTI 736
AA E PL+ D + FG T G L S L K + + E+ T
Sbjct: 468 AAAAELPLT-DEDMELFGP------ETENLLGQLESAKLLRRRTKAWHWTRRERAADLT- 519
Query: 737 SIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALC 796
IR ++++ + +L ++ A V+EGAV++HQG TYLV+ L+L +AL
Sbjct: 520 DIRGEGGRPIQIVESGTGRLLGTVDAGSAHTAVHEGAVHLHQGRTYLVRSLDLEDSVALV 579
Query: 797 QKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRG 856
+A+ Y T RD T I V + +L + + VT F R
Sbjct: 580 SEANPSYSTVARDTTSITVLETDTEI--PWGDGRLCYGSVE-----VTNQVVSFLRRRLI 632
Query: 857 SGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSG-LHAASHALLHVVPIYV 915
+G + +L LP + ++AVW V + N G LHAA HA + ++P++
Sbjct: 633 TGEVLGETKLDLPPRTLRTRAVWWTVTEDQLDEARINPEILGGALHAAEHASIGLLPLFA 692
Query: 916 RCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
C+ D+ H P + +YD HPGG G +++
Sbjct: 693 TCDRWDIGGVSIPLHPDTLLPT-VFVYDGHPGGAGFAERA 731
>gi|379706618|ref|YP_005261823.1| putative ATP-dependent RNA helicase [Nocardia cyriacigeorgica
GUH-2]
gi|374844117|emb|CCF61179.1| putative ATP-dependent RNA helicase [Nocardia cyriacigeorgica
GUH-2]
Length = 766
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 263/735 (35%), Positives = 384/735 (52%), Gaps = 52/735 (7%)
Query: 225 DISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKS 284
++ AR A +V+ P + +AL GI+ +SHQ + + G++VVVAT T+SGKS
Sbjct: 3 ELPARAARVVDWPAWVRPEVVAALGGIGITAPWSHQVSTAEFAAGGRHVVVATGTASGKS 62
Query: 285 LCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDA-SIDIGVYDGDTTQK 343
L Y LPVL L D ++ALY+ PTKAL DQLRA+ +T I YDGDT +
Sbjct: 63 LGYQLPVLSDLLDDPKATALYIAPTKALGADQLRAIGELTHDGPLRDIHAATYDGDTPGE 122
Query: 344 DRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVV 403
R W+R NAR + TNPDMLH+ +L H +++R+L LR +VV
Sbjct: 123 IRQWVRANARWIFTNPDMLHVGMLRSHKRWARVLRRLR-------------------YVV 163
Query: 404 IDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLE 463
+DE HAY+G FG H AL+LRRL RL +H YG+DP FV +AT+A+P + L +
Sbjct: 164 VDECHAYRGVFGSHVALVLRRLRRLAAH-YGADPVFVLCSATTADPADAASRLVGAPCVA 222
Query: 464 LIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQ 523
+ DGSP + LW P L +V ++ + R AAN SE + + A++V
Sbjct: 223 -VTEDGSPRGARTVALWEP-PLLTAVTGENGAPV---RRAAN------SEAARIMADLVV 271
Query: 524 HGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGK 583
G R + F RSR+ E+ R +L E P LV+ + YR GY+ EDRR +E G
Sbjct: 272 EGARTLTFVRSRRGAEVAAMEARRLLAEVDPDLVERVAAYRGGYLPEDRRELEAAISDGT 331
Query: 584 LCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLD 643
L A TNALELG+D+ +D + GFPG++AS WQQAGR+GRR + SL + VA + PLD
Sbjct: 332 LLAAATTNALELGVDIAGLDAVVMSGFPGTVASFWQQAGRAGRRTQGSLVLLVARDDPLD 391
Query: 644 QYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL-SLIYDEKYFGSGLS--SG 700
Y + +PE L P+E D N VL L+CAALE PL S DE G L+ +G
Sbjct: 392 TYLVHHPEALLDKPVEATITDPTNPYVLGPQLLCAALELPLTSREADELGAGPVLADLAG 451
Query: 701 ITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEI 760
++ R S D +A+ Y+ + P + +R ++D +S +L
Sbjct: 452 QGLIRRRENGSPD-----TARW--YVTADTQPHDAVDVRGGIGAPVAIVDGESGRLLGTA 504
Query: 761 EESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNN 820
+ +A ++ GAV++HQG TY+V EL+L +A D + T R T + + +
Sbjct: 505 DAGRAMATLHAGAVHLHQGETYVVDELDLDGGVAFVHAGDPGWTTSARQTTSLTI----D 560
Query: 821 AYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWI 880
A + + +T +AQ TVT+ G+ R +G + D VEL LP + ++AV
Sbjct: 561 AILDRRAYGSVTTASAQ---VTVTSQVVGYLRTLP-TGEVLDLVELDLPPQTLPTKAVLY 616
Query: 881 QV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERI 939
V P+ ++ LHAA HA + ++P+ C+ D+ H P +
Sbjct: 617 TVTPELLERAGIPAARVPGALHAAEHAAIGLLPLVATCDRWDIGGVSIAGHPDTGLPT-V 675
Query: 940 LLYDRHPGGTGVSKQ 954
+YD PGG G + +
Sbjct: 676 FVYDGQPGGAGFADR 690
>gi|294498194|ref|YP_003561894.1| ATP-dependent RNA helicase yprA [Bacillus megaterium QM B1551]
gi|294348131|gb|ADE68460.1| ATP-dependent RNA helicase yprA [Bacillus megaterium QM B1551]
Length = 756
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 250/770 (32%), Positives = 402/770 (52%), Gaps = 81/770 (10%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E+++ L+ Q +VH I ++A P +L + AL++ GI LY+HQ +
Sbjct: 9 EVMDILQTNPSYQQNIVHWHTIEEKEAKTAPFPASLHTKLRQALENRGIGSLYTHQKTAF 68
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
+ A KNVV T T+SGK+LCYNLPVL+++ + + ALY+FPTKALAQDQ L +
Sbjct: 69 DLATAKKNVVAVTPTASGKTLCYNLPVLQSIMENDQARALYLFPTKALAQDQKSELNEII 128
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
+ + I+ YDGDT R +R ++ITNPDMLH +ILP+H ++ + NL
Sbjct: 129 EEMEVPINSYTYDGDTPANIRQKVRKAGHIVITNPDMLHSAILPHHTKWVSLFENL---- 184
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
+++VIDE H Y+G FG H A ++RRL R+C + YGS+P F+ ++A
Sbjct: 185 ---------------KYIVIDELHTYRGVFGSHVANVIRRLKRICRY-YGSNPIFICTSA 228
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T ANP+E L + L+ N+G+P +K F+ +NP ++NK
Sbjct: 229 TIANPKELAEHLTGAHVM-LVDNNGAPSGRKHFIFYNP-----PIVNK----------PL 272
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYR 564
N S EV + E +++ ++ I F RSR E++L+Y +E+++ + SI YR
Sbjct: 273 NIRRSATLEVRNIAGEFLKNKIQTIVFARSRVRVEIILTYLQELVKNQLQN--KSIQGYR 330
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
GY+ + RR IER G + GV +TNALELG+D+G + V + G+PG++AS WQQAGR+
Sbjct: 331 GGYLPKQRREIERGLREGSIYGVVSTNALELGVDIGQLQVCVMTGYPGTVASAWQQAGRA 390
Query: 625 GRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
GRR ++ V +A PLDQY +++P+ F E I+ N +L HL CA+ E P
Sbjct: 391 GRRHGEAVIVMIASSSPLDQYMIQHPDYFFSRNPETARINPDNLVILVDHLKCASYELP- 449
Query: 685 SLIYDEKYFGSGLS-SGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIES 743
F G + G+ +L + + S + Y ++ P+H IS+R+
Sbjct: 450 --------FKQGETFDGVEIEDVLEFLQEERVIHFSGDKW-YWMNDSFPAHNISLRSASQ 500
Query: 744 ERYEVIDMQSN----EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKA 799
E +ID QS+ +V+ E++ A +++ A+Y+HQG Y V+ L+ K A ++
Sbjct: 501 ENVVIID-QSDVANVKVIGEMDRFSAMTLLHDEAIYLHQGIQYQVEYLDWDEKKAYVREV 559
Query: 800 DLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGI 859
D+ YFT ++ V + K+++ +T + + + ++ I
Sbjct: 560 DVDYFTDANLAVNLKV--------LEADKERMERTYSIGYGDVMVSAMATIFK-----KI 606
Query: 860 IFDTVE------LYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPI 913
F+T E + LP+ + AVW+ + + E L + ++AL + P+
Sbjct: 607 KFETHENIGSGPISLPEEELHTNAVWLSFEK--EQFNESEERLEQALISVANALQSIAPL 664
Query: 914 YVRCNFSDL--APECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDMKMN 961
V C+ SDL P+ H+ + I LYDR+PGG G+S +V + +MN
Sbjct: 665 MVMCDPSDLHVVPQIKAVHNEQ---PTIFLYDRYPGGIGLSDKVYE-QMN 710
>gi|294630596|ref|ZP_06709156.1| ATP-dependent RNA helicase [Streptomyces sp. e14]
gi|292833929|gb|EFF92278.1| ATP-dependent RNA helicase [Streptomyces sp. e14]
Length = 825
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 252/759 (33%), Positives = 388/759 (51%), Gaps = 55/759 (7%)
Query: 203 PLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAE 262
P +++ L G ++ H E + R PD + +A+++ GI ++HQA
Sbjct: 38 PGAVLDRLASGPSRAARITHTEHLPPRAGRHAVWPDRIRPEVIAAVQACGIEHPWAHQAL 97
Query: 263 SIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL------SHDLSSSALYMFPTKALAQDQ 316
+ +L G +VV+AT T+SGKSL Y +P L L ++ ++ALY+ PTKALA DQ
Sbjct: 98 AAEHALDGDSVVIATGTASGKSLAYLMPTLSTLLDGSEAANGRGATALYLAPTKALAADQ 157
Query: 317 LRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRI 376
RA+ + + ++ VYDGDT ++R W+R A ++TNPDMLH ILP H ++S
Sbjct: 158 RRAVRELARPLGTAVRPAVYDGDTPVEEREWVRQYANYVLTNPDMLHRGILPSHPRWSSF 217
Query: 377 LSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSD 436
L L+ +V++DE H Y+G FG H A +LRRL RLC+ YG+
Sbjct: 218 LRALK-------------------YVIVDECHTYRGVFGSHVAQVLRRLRRLCAR-YGAS 257
Query: 437 PSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTD 496
P F+ ++AT+A P L L +E + +D SP + +F LW P T+
Sbjct: 258 PVFLLASATAAEPSVAAGRLTGLPVVE-VADDASPRGELVFALWEP----------PLTE 306
Query: 497 MDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHL 556
+ R A + ++ +E + L ++ G+R +AF RSR+ EL+ +E L E L
Sbjct: 307 LHGERGAPVRRTA-TAETADLLTDLTLQGVRSVAFVRSRRGAELISVIAQERLAEIDRPL 365
Query: 557 VDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIAS 616
+ YR GY+ E+RR +ER G+L G+AAT ALELG+DV +D L G+PG+ AS
Sbjct: 366 ARRVAAYRGGYLPEERRALERALHSGELLGLAATTALELGVDVSGLDAVLIAGYPGTRAS 425
Query: 617 LWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLV 676
LWQQAGR+GR + +LAV VA + PLD + + +PE LF P+E +D N VL HL
Sbjct: 426 LWQQAGRAGRAGQGALAVLVARDDPLDTFLVHHPEALFDQPVESTVLDPDNPYVLAPHLC 485
Query: 677 CAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTI 736
AA E PL+ D + FG + + L+ L + + + E+ T
Sbjct: 486 AAAAELPLT-DDDIQLFGPACADLLPQLEAAKLLR------RRTRAWHWTRRERAADLT- 537
Query: 737 SIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALC 796
+R +V++ + +L ++E+ + V+EGAV++HQG TYLV+ L+L +AL
Sbjct: 538 DLRGEGGRPVQVVEAGTGRLLGTVDEAASHTAVHEGAVHLHQGRTYLVRSLDLDDSVALV 597
Query: 797 QKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRG 856
++A+ Y T RD T I V A +L + + VT F R
Sbjct: 598 EQANPPYTTVARDTTAISVL--ETDVAVPWGDGRLCYGSVE-----VTNQVVSFLRRRVI 650
Query: 857 SGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSG-LHAASHALLHVVPIYV 915
+G + +L LP + ++AVW V + N G LHAA HA + ++P++
Sbjct: 651 TGEVLGETKLDLPPRTLRTRAVWWTVTEDQLDEARINPEILGGALHAAEHASIGMLPLFA 710
Query: 916 RCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
C+ D+ H P + +YD HPGG G +++
Sbjct: 711 TCDRWDIGGVSIPLHPDTLLPT-VFVYDGHPGGAGFAER 748
>gi|384047975|ref|YP_005495992.1| distinct helicase family with a unique C terminal domain protein,
partial [Bacillus megaterium WSH-002]
gi|345445666|gb|AEN90683.1| Distinct helicase family with a unique C terminal domain protein
[Bacillus megaterium WSH-002]
Length = 758
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 252/770 (32%), Positives = 401/770 (52%), Gaps = 81/770 (10%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E+++ L+ Q +VH I ++A P +L + AL++ GI LY+HQ +
Sbjct: 11 EVMDILQTNPSYQQNIVHWHTIEEKEAKTAPFPASLHTKLRQALENRGIGSLYTHQKTAF 70
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
+ A KNVV T T+SGK+LCYNLPVL+++ + + ALY+FPTKALAQDQ L +
Sbjct: 71 DLATAKKNVVAVTPTASGKTLCYNLPVLQSIVENDQARALYLFPTKALAQDQKSELNEII 130
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
+ + I+ YDGDT R +R ++ITNPDMLH +ILP+H ++ + NL
Sbjct: 131 EEMEVPINSYTYDGDTPANIRQKVRKAGHIVITNPDMLHSAILPHHTKWVSLFENL---- 186
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
+++VIDE H Y+G FG H A ++RRL R+C + YGS+P F+ ++A
Sbjct: 187 ---------------KYIVIDELHTYRGVFGSHVANVIRRLKRICRY-YGSNPIFICTSA 230
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T ANP+E L + L+ N+G+P +K F+ +NP ++NK
Sbjct: 231 TIANPKELAEHLTGAHVM-LVDNNGAPSGRKHFIFYNP-----PIVNK----------PL 274
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYR 564
N S EV + E +++ ++ I F RSR E++L+Y +E+++ + SI YR
Sbjct: 275 NIRRSATLEVRNIAGEFLKNKIQTIVFARSRVRVEIILTYLQELVKNQLQN--KSIQGYR 332
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
GY+ + RR IER G + GV +TNALELG+D+G + V + G+PG++AS WQQAGR+
Sbjct: 333 GGYLPKQRREIERGLREGSIYGVVSTNALELGVDIGQLQVCVMTGYPGTVASAWQQAGRA 392
Query: 625 GRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
GRR ++ V VA PLDQY +++P+ F E I+ N +L HL CA+ E P
Sbjct: 393 GRRHGEAVIVMVASSSPLDQYMIQHPDYFFSRNPETARINPDNLVILVDHLKCASYELP- 451
Query: 685 SLIYDEKYFGSGLS-SGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIES 743
F G + G+ +L + + S + Y ++ P+H IS+R+
Sbjct: 452 --------FKQGETFDGVEIEDVLEFLQEERVIHFSGDKW-YWMNDSFPAHNISLRSASQ 502
Query: 744 ERYEVIDMQSN----EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKA 799
E +ID QS+ +V+ E++ A +++ A+Y+HQG Y V+ L+ K A ++
Sbjct: 503 ENVVIID-QSDVANVKVIGEMDRFSAMTLLHDEAIYLHQGIQYQVEYLDWDEKKAYVREV 561
Query: 800 DLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGI 859
D+ YFT ++ V + K++L T + + + ++ I
Sbjct: 562 DVDYFTDANLAVNLKV--------LEADKERLEGTYSIGYGDVMVSAMATIFK-----KI 608
Query: 860 IFDTVE------LYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPI 913
F+T E + LP+ + AVW+ + + E L + ++AL + P+
Sbjct: 609 KFETHENIGSGPISLPEEELHTNAVWLSFEK--EQFYESEERLEQALISVANALQSIAPL 666
Query: 914 YVRCNFSDL--APECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDMKMN 961
V C+ SDL P+ H+ + I LYDR+PGG G+S +V + +MN
Sbjct: 667 MVMCDPSDLHVVPQIKAVHNEQ---PTIFLYDRYPGGIGLSDKVYE-QMN 712
>gi|377570947|ref|ZP_09800074.1| putative ATP-dependent helicase [Gordonia terrae NBRC 100016]
gi|377531874|dbj|GAB45239.1| putative ATP-dependent helicase [Gordonia terrae NBRC 100016]
Length = 775
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 246/741 (33%), Positives = 380/741 (51%), Gaps = 57/741 (7%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+ H+ I +R A VE P + A GI K+++HQA + A+ G +V + T T
Sbjct: 25 LTHLSVIPSRSASFVEWPGWVPQPLIDAYADNGIEKVWTHQASAADAAFHGNHVAICTGT 84
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRA---LLAMTKAFDASIDIGVY 336
+SGKSL Y +P+L AL ++ +++ALY+ PTKAL DQ+RA ++A F + Y
Sbjct: 85 ASGKSLSYQMPILTALLNEKNATALYLAPTKALGADQIRAVSSIIAGRPEF-GHLQPCAY 143
Query: 337 DGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIF 396
DGDT + R W R ++R + TNPDMLH+ IL +H ++ + F
Sbjct: 144 DGDTDPEIRQWARAHSRWIFTNPDMLHIGILSHHHRWRQF-------------------F 184
Query: 397 LFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMEL 456
+RF+V+DE H Y+G FG HTAL++RRL R+ + G+DP + ++AT A P E L
Sbjct: 185 RHLRFIVVDECHHYRGVFGSHTALVMRRLLRI-ARAAGADPIVIGASATVAEPAEALGRL 243
Query: 457 ANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSY 516
+ + + DGSP ++ LW P + L V + N A S +E +
Sbjct: 244 IGEPAVAVTE-DGSPRGERTVALWEP-NFLPVVTGE---------NGAPVRRSAGAESAR 292
Query: 517 LFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIE 576
L A+ V G R + F RSR+ EL R +L ++AP L I YRAGY+A+DRRR+E
Sbjct: 293 LLADFVVEGARTLCFARSRRGVELTALSARHLLSQSAPELESRIGAYRAGYLADDRRRLE 352
Query: 577 RDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERP--SLAV 634
+ G+L GVA TNALELG+D+ +D + G+PG++AS WQQAGR+GR+ SL V
Sbjct: 353 KAISDGELLGVATTNALELGVDISGLDAVIVSGYPGTVASFWQQAGRAGRQRESGDSLVV 412
Query: 635 YVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFG 694
VA + PLD Y + +PE L P+E D N +L HL+CAA+E PLS + +
Sbjct: 413 LVARDDPLDTYLVHHPESLLGKPVEATVTDPANPYILGPHLLCAAMEKPLSDTEIDAWNA 472
Query: 695 SGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN 754
++ L G L K Y+ P + IR + ++D ++
Sbjct: 473 HDVAH---DLAAEGLL-------RKRKSGWYVTAGTEPHADVDIRGGIGGQVLIVDTTTS 522
Query: 755 EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIH 814
++L ++ +A V+ GAV++HQG +YLV EL+L +AL D + T R+ T
Sbjct: 523 QLLGTVDTGRAMSTVHPGAVHIHQGESYLVDELDLDDGLALTHPEDPDWTTSARETT--- 579
Query: 815 VSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYE 874
+ ++ + T + VT G+ R R +G + D VEL +P+ +
Sbjct: 580 ----DVTVTVTLASRRFGPLTVAFVEVDVTHQVVGYLRTLR-TGEVLDAVELDMPEQTLS 634
Query: 875 SQAV-WIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSR 933
++AV + P+S+ LHAA HA + ++P+ C+ D+ + H
Sbjct: 635 TRAVMYTLTPESLADAGIDETRLPGSLHAAEHAAIGLLPLVATCDRWDIGGLSTDLHPDT 694
Query: 934 YFPERILLYDRHPGGTGVSKQ 954
P + +YD + GG G +++
Sbjct: 695 GLPT-VFVYDGYMGGAGFAER 714
>gi|51892761|ref|YP_075452.1| ATP-dependent RNA helicase [Symbiobacterium thermophilum IAM 14863]
gi|51856450|dbj|BAD40608.1| ATP-dependent RNA helicase [Symbiobacterium thermophilum IAM 14863]
Length = 758
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 259/761 (34%), Positives = 393/761 (51%), Gaps = 69/761 (9%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
+ ++ LR +VH + + A + P AL +ALK GI +LY+HQAE+I
Sbjct: 5 QFLDQLRSDPAIGPNIVHWQTLPPAPAQYADWPAALDPRLVAALKERGIHRLYTHQAEAI 64
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
A+LAG+N VV T T+SGKS+CYNLPVL + H+ ++ ALY+FPTKALAQDQ+ + ++
Sbjct: 65 AAALAGQNTVVVTPTASGKSMCYNLPVLNTILHEPAARALYLFPTKALAQDQVAEVKSLA 124
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
A I VYDGDT + R R ++ITNPDMLH +LP+H ++ ++ NL
Sbjct: 125 DRLGAEIKSYVYDGDTPPQVRQVCRQAGHIVITNPDMLHTGVLPHHTKWVKLFENL---- 180
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
R+VVIDE H Y+G FG H A ++RRL R+C YGS P F+ S+A
Sbjct: 181 ---------------RYVVIDELHQYRGVFGSHLANLMRRLRRICD-FYGSRPVFLCSSA 224
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T ANP+E L + LI +G+P +K F+ NP + R D R
Sbjct: 225 TIANPQELAERLIE-QPVRLIDQNGAPRGEKHFIFLNPPAVGR----------DGVREPV 273
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYR 564
K S+ ++ +++Q+ ++ I F RSR E++ +Y + E P+ + YR
Sbjct: 274 VKASARVA------GKLLQNDIQTIVFARSRNNVEVLTTYLK---ERVGPNKAHRVMGYR 324
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
GY +RR+IE G++ GV +TNALELGID+G ++ + G+PG++AS WQQAGR+
Sbjct: 325 GGYRPLERRQIEAGLREGRILGVVSTNALELGIDIGQLEACVMTGYPGTVASAWQQAGRA 384
Query: 625 GRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
GRR SL V V PLDQY M++PE F+ E I+ N +L HL CAA E P
Sbjct: 385 GRRASTSLTVLVGSASPLDQYIMEHPEFFFERAPEQALINPDNLLILVSHLKCAAFELP- 443
Query: 685 SLIYDEKYFGSGLSSGI-TTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIES 743
F G G+ TT + YL + L + + E P+ +IS+R++++
Sbjct: 444 --------FLEGEKFGVETTGEILDYLEEEGILRKVGGKYHWSA-ENFPAESISLRSVDA 494
Query: 744 ERYEVIDMQ---SNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKAD 800
E +ID VL EI++ A V+ A+Y+HQ Y V L+ K A K D
Sbjct: 495 ENVVIIDQSVPGQTRVLGEIDQLGAMTMVHTNAIYLHQAEQYHVDRLDWDEKKAYVHKVD 554
Query: 801 LKYFTKTRDYTDIHVSGGNNAYATKISKDQLT-KTTAQALACTVTTTWFGFYRLWRGSGI 859
++Y YTD +++ K++L + + T F RL +
Sbjct: 555 VEY------YTDANLAVTIKPLDVLKEKEELGLRVRFGEVMTAAKATIFKKIRLHTHENL 608
Query: 860 IFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNF 919
+ E++LP+Y + A W+ +P+S+ Q+ +S L H L + P+++ C+
Sbjct: 609 GWG--EIHLPEYQMHTAAYWLSLPESMCEGFTQD-ELQSALAGLGHLLRGLAPLFLMCDP 665
Query: 920 SDLAP--ECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDM 958
+DL + +P + I LYD +P G G+ ++ D+
Sbjct: 666 ADLRSVIQVRSPFEEA---PTIYLYDAYPAGIGLGEKCYDL 703
>gi|289770838|ref|ZP_06530216.1| helicase [Streptomyces lividans TK24]
gi|289701037|gb|EFD68466.1| helicase [Streptomyces lividans TK24]
Length = 831
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 256/767 (33%), Positives = 385/767 (50%), Gaps = 69/767 (8%)
Query: 203 PLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAE 262
P +++ L G ++ H E + R PD + +A+++ GI ++HQA
Sbjct: 22 PGMLLDRLAAGPSRAARITHTEHLPPRAGRHAVWPDRIRPEVLAAVRAAGIEHPWAHQAR 81
Query: 263 SIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL------SHDLSSSALYMFPTKALAQDQ 316
+L G +VVVAT T+SGKSL Y +PVL AL + ++ LY+ PTKALA DQ
Sbjct: 82 VAEHALDGDSVVVATGTASGKSLAYLVPVLSALVDGSEAPNGRGATTLYLAPTKALAADQ 141
Query: 317 LRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRI 376
R++ +++ S+ VYDGDT ++R W+R ++TNPDMLH ILP H ++S
Sbjct: 142 CRSVKELSQPLGTSVRAAVYDGDTPFEEREWIRQYGTYVLTNPDMLHRGILPSHPRWSSF 201
Query: 377 LSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSD 436
L L+ +VVIDE H Y+G FG H A +LRRL RLC+ YG+
Sbjct: 202 LKALK-------------------YVVIDECHTYRGVFGSHVAQVLRRLRRLCAR-YGAS 241
Query: 437 PSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTD 496
P F+ ++AT+A P L L +E + +D SP + +F LW P T+
Sbjct: 242 PVFLLASATAAEPSVAARRLTGLPVIE-VADDASPRGELVFALWEP----------PLTE 290
Query: 497 MDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHL 556
++ + A + ++ +E + L ++ G+R I F RSR+ EL+ +E L E L
Sbjct: 291 LEGEKGAPVRRTA-TAEAADLLTDLTVQGMRSITFVRSRRGAELISVIAQERLAEVDRSL 349
Query: 557 VDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIAS 616
+ YR GY+ E+RR +ER G L G+AATNALELG+D+ +D + G+PG+ AS
Sbjct: 350 AGRVAAYRGGYLPEERRALERALHSGDLLGLAATNALELGLDISGLDAVVIAGYPGTRAS 409
Query: 617 LWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLV 676
LWQQAGR+GR + +LAV VA + PLD + + +PE LF P+E +D N VL HL
Sbjct: 410 LWQQAGRAGRAGQGALAVLVARDDPLDTFLVHHPEALFDQPVESTVLDPDNPYVLAPHLC 469
Query: 677 CAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTI 736
AA E PL+ D K FG + L+ L + + + E+ T
Sbjct: 470 AAAAELPLTE-EDLKLFGPACEELLPQLEAAKLLR------RRTRAWHWTRRERAADLT- 521
Query: 737 SIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALC 796
IR +V++ + +L ++ A V+EGAV++HQG TYLV+ L+L +AL
Sbjct: 522 DIRGEGGRPVQVVEEGTGRLLGTVDAGAAHTAVHEGAVHLHQGRTYLVRSLDLEDSVALV 581
Query: 797 QKADLKYFTKTRDY-------TDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFG 849
++A Y T RD TDI V G+ +L + + VT
Sbjct: 582 EQATPAYSTVARDTTAISVLETDIEVPWGDG---------RLCYGSVE-----VTNQVVS 627
Query: 850 FYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSG-LHAASHALL 908
F R +G + +L LP + ++AVW V + N G LHAA HA +
Sbjct: 628 FLRRRLITGEVLGETKLDLPPRTLRTRAVWWTVTEDQLDAARINPEILGGALHAAEHASI 687
Query: 909 HVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
++P++ C+ D+ H P + +YD HPGG G +++
Sbjct: 688 GMLPLFATCDRWDIGGVSVPLHPDTLLPT-VFVYDGHPGGAGFAERA 733
>gi|326441798|ref|ZP_08216532.1| putative ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC
27064]
Length = 732
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 251/716 (35%), Positives = 374/716 (52%), Gaps = 55/716 (7%)
Query: 246 SALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL------SHDL 299
+A++ TG+ ++HQAE+ +L G++VV+AT T+SGKSL Y PVL L +
Sbjct: 3 NAIRLTGVEHPWTHQAEAAGHALDGESVVIATGTASGKSLAYLAPVLTTLLDGAEAPNGR 62
Query: 300 SSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNP 359
++ALY+ PTKALA DQ RA+ A+ K + VYDGDT ++R W+R A ++TNP
Sbjct: 63 GATALYLAPTKALAADQCRAVKALAKPLGHRVRPAVYDGDTPVEEREWVRQYATYVLTNP 122
Query: 360 DMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTA 419
DMLH ILP H ++S L +LR +VVIDE H Y+G FG H A
Sbjct: 123 DMLHRGILPSHPRWSSFLRSLR-------------------YVVIDECHTYRGVFGSHVA 163
Query: 420 LILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVL 479
+LRRL R+C YG+DP F+ ++AT+A+P L L +E + +D SP + +F L
Sbjct: 164 QVLRRLRRICVR-YGADPVFLLASATAADPAVAAHRLTGLPVVE-VSDDASPRGELVFAL 221
Query: 480 WNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCE 539
W P T++ R A + ++ +E + L ++ G+R +AF RSR+ E
Sbjct: 222 WEP----------PLTELRGERGAPVRRTA-TAETADLLTDLTVQGVRTVAFVRSRRGAE 270
Query: 540 LVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDV 599
L+ +E L E L + YR GY+ E+RR +E G+L G+AAT ALELG+DV
Sbjct: 271 LISVIAKERLAEVDRSLPRRVAAYRGGYLPEERRALENALHSGELLGLAATTALELGVDV 330
Query: 600 GHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIE 659
+D + G+PG+ ASLWQQAGR+GR + +LAV VA + PLD + + +PE LF+ P+E
Sbjct: 331 SGLDAVVISGYPGTRASLWQQAGRAGRAGQGALAVLVARDDPLDTFLVHHPEALFRQPVE 390
Query: 660 CCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSS 719
+D N VL HL AA E PL+ D FG + + L+ L
Sbjct: 391 STVLDPDNPYVLAPHLCAAAAELPLTEA-DLALFGPAAAGLMPQLEGARLLR------RR 443
Query: 720 AKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQG 779
A + + E+ T IR ++++ + +L ++ES A V+EGAV++HQG
Sbjct: 444 ATGWHWTRRERAADLT-DIRGEGGRPVQIVEESTGRLLGTVDESAAHTSVHEGAVHLHQG 502
Query: 780 HTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQAL 839
TYLV+ L+L +AL + A Y T RD T + V G + +L + +
Sbjct: 503 RTYLVRRLDLEDSVALVEDAVPPYSTTARDTTSVSVLGTD--IEVPWGDGRLCYGSVE-- 558
Query: 840 ACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQS-VKAVVEQNFSFRS 898
VT F R +G + +L LP ++AVW V +S + A
Sbjct: 559 ---VTHQVVSFLRRKLMTGEVLGETKLDLPPRILRTRAVWWTVTESQLDAARIAPEQLGG 615
Query: 899 GLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
LHAA HA + ++P++ C+ D+ H P + +YD HPGG G +++
Sbjct: 616 ALHAAEHASIGLLPLFATCDRWDIGGVSVPLHPDTGLPT-VFVYDGHPGGAGFAER 670
>gi|68537050|ref|YP_251755.1| helicase [Corynebacterium jeikeium K411]
gi|68264649|emb|CAI38137.1| putative helicase [Corynebacterium jeikeium K411]
Length = 784
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 263/742 (35%), Positives = 387/742 (52%), Gaps = 59/742 (7%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+ H I AR + + P+ + L GIS +SHQ E+ + AG++VVVAT T
Sbjct: 37 VTHTHTIPARPSQTAQWPEWADETLVEYLHEQGISTPWSHQVETANHAHAGRDVVVATGT 96
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASID---IGVY 336
+SGKSL Y L L L+ +S+ALY+ PTKALAQDQ RA LA A +++ + Y
Sbjct: 97 ASGKSLGYQLAALSDLATASTSTALYIAPTKALAQDQ-RAALARMCAGAVNLNDIMVATY 155
Query: 337 DGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIF 396
DGDT + R +RD AR+++TNPDMLH SIL +SR+L LR
Sbjct: 156 DGDTPPETRRVIRDQARVIVTNPDMLHASILGNPQSWSRLLRTLR--------------- 200
Query: 397 LFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMEL 456
+VVIDE H Y+G FG H A++LRRL RLC G+ P+ V ++ATS +P H L
Sbjct: 201 ----YVVIDECHVYRGVFGAHVAMVLRRLLRLC----GTAPTIVLASATSVDPAAHARRL 252
Query: 457 ANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSY 516
S + + DG+P ++ LW P L + ++ + R AAN SE +
Sbjct: 253 TGRSDVVAVTQDGAPAGERTVALWEP-GFLPDMEGENGAPV---RRAAN------SEAAD 302
Query: 517 LFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICV--YRAGYVAEDRRR 574
+ + G R + F RSR+ E+V E L D++ V YRAGY EDRR
Sbjct: 303 VMGLAIAQGARTLTFVRSRRGAEVVSVAAAEKLSAMG-RSADAVRVAAYRAGYTPEDRRE 361
Query: 575 IERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAV 634
+ER F G+L G+A+TNALELGIDVG +DV + GFPG+IAS QQAGR+GRR + +L V
Sbjct: 362 LERRFDNGELLGIASTNALELGIDVGGLDVVVTSGFPGTIASFRQQAGRAGRRGQGALVV 421
Query: 635 YVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFG 694
V + P+D Y + +PE L P+E D N VL H+VCAA E PLS + +
Sbjct: 422 LVGADDPMDTYLLHHPEALLDRPVENTVFDPTNPYVLADHVVCAAAEKPLS---EAEVAH 478
Query: 695 SGLSSGITTLKNRGYLSSDP-SLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQS 753
G + L +G L P + + K+ E + H + +SIR + + ++++ S
Sbjct: 479 WGAERVVEHLLRQGALKRRPRGIFADLKVAEQV-HSQ-----VSIRGGAAAQVAIVEVDS 532
Query: 754 NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDI 813
+L +++S+A V+ GAVYMHQG T++V+ L+L +A + +Y T+ TDI
Sbjct: 533 GRLLGTVDQSRATSDVHTGAVYMHQGETFVVQLLDLEESVAWVRPEFPEYTTQVIRDTDI 592
Query: 814 HVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSY 873
V T+ ++ + V+ T G+ + G G I +TV L +P S
Sbjct: 593 AVR------RTRGTRKVCEGVWLADVDVEVSHTVSGYRKRLPG-GEILETVPLDVPPESL 645
Query: 874 ESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDS 932
++AV V P + + ++ LHAA HA + ++P+ C+ D+ H
Sbjct: 646 RTRAVAYTVDPDVLLDLGLPEPTWPGTLHAAEHAAIGLLPLIATCDRWDIGGVSTALHAD 705
Query: 933 RYFPERILLYDRHPGGTGVSKQ 954
P + +YD + GG G ++Q
Sbjct: 706 TGLPT-VFVYDGYAGGAGFAEQ 726
>gi|184200116|ref|YP_001854323.1| putative ATP-dependent helicase [Kocuria rhizophila DC2201]
gi|183580346|dbj|BAG28817.1| putative ATP-dependent helicase [Kocuria rhizophila DC2201]
Length = 776
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 255/772 (33%), Positives = 392/772 (50%), Gaps = 73/772 (9%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
+MV+ L +G + Q+ HV +I R V PD L + +A + GI + Y+HQ ++
Sbjct: 6 QMVDLLGRGPRPE-QVRHVREIPERAPVHAPWPDWLHPDVVAAYERLGIHEPYAHQVAAL 64
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEA--------------LSHDLSSSALYMFPTK 310
A ++ +VAT T+SGKSL Y V++A L H ++ALY+ PTK
Sbjct: 65 NAP---RHAIVATGTASGKSLVYQSLVVDAVHRGRLAVAERPGMLHHPDEATALYLSPTK 121
Query: 311 ALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYH 370
ALA DQL +L ++ FD + YDGDT +R W+R++A +++ NPDMLH +LP H
Sbjct: 122 ALAADQLSSLRSL--GFD-DVRAATYDGDTDPGERRWIREHADVILCNPDMLHHGVLPNH 178
Query: 371 GQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCS 430
+SR F +R+V+IDEAH+Y+G FG H A++LRRL R+ +
Sbjct: 179 AGWSRF-------------------FRRLRYVIIDEAHSYRGVFGSHVAVVLRRLARIAA 219
Query: 431 HVYGSDPSFVFSTATSANPREHCMELANLSTLEL--IQNDGSPCAQKLFVLWNPTSCLRS 488
H YG+ P F+ ++ATSA+P+E +L ++ + D SP + VLW P
Sbjct: 220 H-YGASPRFIGASATSASPQESFAKLIGCPPEDVTAVTEDTSPHGSRTVVLWEP------ 272
Query: 489 VLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREI 548
+S D N A + + +E S + ++V +R IAF RSR+ E +
Sbjct: 273 --EQSPGGSD---NGAPRRRTVTAEASDMLTDLVLRQVRTIAFIRSRRGAETIAQAAHRQ 327
Query: 549 LEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHL 608
LEE P L + YR+G++ E+RR +E+ G+L GVA+T+ALELGID+ +D L
Sbjct: 328 LEEVDPSLGHRVAAYRSGFLPEERRELEQQLRDGRLLGVASTSALELGIDIAGLDAVLVA 387
Query: 609 GFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNH 668
G+PG+ AS QQ GR+GR + +LA +A + PLD Y + +PE +F P+E +A N
Sbjct: 388 GWPGTRASFLQQIGRAGRAGQQALAALIAGDDPLDGYLVNHPEAIFDVPVEATVFEASNP 447
Query: 669 KVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGH 728
VL HL AA E PL E+ FG + +L G+L PS +
Sbjct: 448 YVLAPHLCAAAAELPLRPEELER-FGPTARDVVDSLTAAGHLRRRPS-------GWFWTR 499
Query: 729 EKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELN 788
+ P+ +SIR+ + ++ID + VL + ++ +Q + GAVY+HQG TYLV EL+
Sbjct: 500 SEQPAGMVSIRSGDGGPVQIIDSDTGTVLGTMGAPQSHYQAHPGAVYVHQGRTYLVDELD 559
Query: 789 LSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWF 848
+A ++A ++T RD T++ V ++ Q + + VTT
Sbjct: 560 EELHVAAVRRAFPDFYTVARDVTEVRVQDVADSV-------QWGPVSIHRGSVDVTTQVV 612
Query: 849 GFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQV--PQSVKAVVEQNFSFRSGLHAASHA 906
+ R S + L LP + A W V PQ +E+ LHAA HA
Sbjct: 613 SYQRKLVASNEVAGEEPLELPPRQLSTVATWFTVSGPQLAAMGIEEP-DIPGALHAAEHA 671
Query: 907 LLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDM 958
++ ++P+ C+ D+ H P I ++D HPGG G +++ DM
Sbjct: 672 MIGLLPLLASCDRWDVGGLSTALHVDTELPT-IFVHDGHPGGAGFAERGYDM 722
>gi|295703544|ref|YP_003596619.1| ATP-dependent RNA helicase yprA [Bacillus megaterium DSM 319]
gi|294801203|gb|ADF38269.1| ATP-dependent RNA helicase yprA [Bacillus megaterium DSM 319]
Length = 756
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 250/770 (32%), Positives = 401/770 (52%), Gaps = 81/770 (10%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E+++ L+ Q +VH I ++A P +L + AL++ GI LY+HQ
Sbjct: 9 EVMDILQTNPSYQKNIVHWHTIEEKEAKTAPFPASLHTKLRQALENRGIGSLYTHQKTGF 68
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
+ + KNVV T T+SGK+LCYNLPVL+++ + + ALY+FPTKALAQDQ L +
Sbjct: 69 DLATSKKNVVAVTPTASGKTLCYNLPVLQSIMENDQARALYLFPTKALAQDQKSELNEII 128
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
+ + I+ YDGDT R +R ++ITNPDMLH +ILP+H ++ + NL
Sbjct: 129 EEMEVPINSYTYDGDTPANIRQKVRKAGHIVITNPDMLHSAILPHHTKWVSLFENL---- 184
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
+++VIDE H Y+G FG H A ++RRL R+C + YGS+P F+ ++A
Sbjct: 185 ---------------KYIVIDELHTYRGVFGSHVANVIRRLKRICRY-YGSNPIFICTSA 228
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T ANP+E L + L+ N+G+P +K F+ +NP ++NK
Sbjct: 229 TIANPKELAEHLTGAHVI-LVDNNGAPSGRKHFIFYNP-----PIVNK----------PL 272
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYR 564
N S EV + E +++ ++ I F RSR E++L+Y +E+++ + SI YR
Sbjct: 273 NIRRSATLEVRNIAGEFLKNKIQTIVFARSRVRVEIILTYLQELVKNQLQN--KSIQGYR 330
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
GY+ + RR IER G + GV +TNALELG+D+G + V + G+PG++AS WQQAGR+
Sbjct: 331 GGYLPKQRREIERGLREGSIYGVVSTNALELGVDIGQLQVCVMTGYPGTVASAWQQAGRA 390
Query: 625 GRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
GRR ++ V VA PLDQY +++P+ F E I+ N +L HL CA+ E P
Sbjct: 391 GRRHGEAVIVMVASSSPLDQYMIQHPDYFFSRNPETARINPDNLVILVDHLKCASYELP- 449
Query: 685 SLIYDEKYFGSGLS-SGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIES 743
F G + G+ +L + + S + Y ++ P+H IS+R+
Sbjct: 450 --------FKQGETFDGVEIEDVLEFLQEERVIHFSGDKW-YWMNDSFPAHNISLRSASQ 500
Query: 744 ERYEVIDMQSN----EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKA 799
E +ID QS+ +V+ E++ A +++ A+Y+HQG Y V+ L+ K A ++
Sbjct: 501 ENVVIID-QSDVANVKVIGEMDRFSAMTLLHDEAIYLHQGIQYQVEYLDWDEKKAYVREV 559
Query: 800 DLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGI 859
D+ YFT ++ V + K+++ +T + + + ++ I
Sbjct: 560 DVDYFTDANLAVNLKV--------LEADKERMERTYSIGYGDVMVSAMATIFK-----KI 606
Query: 860 IFDTVE------LYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPI 913
F+T E + LP+ + AVW+ + + E L + ++AL + P+
Sbjct: 607 KFETHENIGSGPISLPEEELHTNAVWLSFEK--EQFYESEERLEQALISVANALQSIAPL 664
Query: 914 YVRCNFSDL--APECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDMKMN 961
V C+ SDL P+ H+ + I LYDR+PGG G+S +V + +MN
Sbjct: 665 MVMCDPSDLHVVPQVKAVHNEQ---PTIFLYDRYPGGIGLSDKVYE-QMN 710
>gi|403380615|ref|ZP_10922672.1| hypothetical protein PJC66_12422 [Paenibacillus sp. JC66]
Length = 760
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 247/759 (32%), Positives = 390/759 (51%), Gaps = 65/759 (8%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E +E ++K + + I R+A P+ L + AL GI++LYSHQA++
Sbjct: 13 EWLEWIKKQPELMQHVTYWHTIPPREASYAPFPENLHKGIQEALHKRGITQLYSHQAKAF 72
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
A ++VV T T+SGK+LCYNLPVL+ + + ALY+FPTKALAQDQ+ L +
Sbjct: 73 SAVREQQHVVTVTPTASGKTLCYNLPVLQRILEQDEARALYLFPTKALAQDQVAELQQIA 132
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
+A I YDGDT R +R+ +++TNPDMLH +ILP+H ++ ++ NL
Sbjct: 133 NVMEADIKTHTYDGDTPPTVRQAIRNAGHIVVTNPDMLHSAILPHHTKWVKLFENL---- 188
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
++VIDE H+Y+G FG H A ++RRL R+C YGS P F+ ++A
Sbjct: 189 ---------------TYIVIDEVHSYRGVFGSHVANVIRRLKRIC-RFYGSSPQFICASA 232
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T NP+EH L T+ LI ++G+P +K F+ +NP + L ++ + +TR A
Sbjct: 233 TIDNPKEHTERLIG-ETVTLIDDNGAPSGEKHFIFYNP-PVVNQQLGIRKSSVLETRKIA 290
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICV-- 562
++ +G++ I F RSR E++L+Y L++T H + S +
Sbjct: 291 --------------GHLLTNGIQTIVFARSRVRVEILLTY----LQDTVRHELGSKSIRG 332
Query: 563 YRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAG 622
YR GY+ + RR IER G + GV +TNALELGID+G + + G+PG+IAS WQQ+G
Sbjct: 333 YRGGYLPKQRREIERGLRNGDIRGVVSTNALELGIDIGQLQACVLNGYPGTIASTWQQSG 392
Query: 623 RSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEH 682
R+GRR+ S+ VA PLDQY ++ P F+ P E I N +L H+ CAA E
Sbjct: 393 RAGRRQESSVTFLVASSNPLDQYIIQNPAYFFEKPPERALIQPDNLILLVDHVKCAAYEL 452
Query: 683 PLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIE 742
P F G G +L + D + A+ Y + P+H IS+R+
Sbjct: 453 P---------FEEGERFGDESLPDILEFLVDERILHRAERRWYWMDQSFPAHGISLRSAA 503
Query: 743 SERYEVIDMQS-NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADL 801
E + +IDM + + V+ E++ A ++E A+Y+H+G Y V++L+ K A ++ ++
Sbjct: 504 QENFIIIDMTNEHRVIGEVDRFSAPTLIHEEAIYIHEGVQYQVEKLDWEEKKAYVREVNV 563
Query: 802 KYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIF 861
YFT + V T + Q T A A T F +L I
Sbjct: 564 DYFTDASLAVQLKVLQVFKETRTAALERQYGDVTVNAKA-----TIFKKLKLRTHENI-- 616
Query: 862 DTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSD 921
+ ++LP+ + + W + A + N + L S+ L+H+ P+Y+ C+ D
Sbjct: 617 GSGPIHLPEEELHTSSYWFSIGDEAAAAMTTN-DMQYALLGLSNVLVHLAPLYLMCDPLD 675
Query: 922 L--APECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDM 958
+ P+ H+ + + YDR+PGG G+S+++ D+
Sbjct: 676 IRVVPQVRALHNKK---PTLFFYDRYPGGVGLSERLFDI 711
>gi|374299659|ref|YP_005051298.1| hypothetical protein [Desulfovibrio africanus str. Walvis Bay]
gi|332552595|gb|EGJ49639.1| Protein of unknown function DUF1998 [Desulfovibrio africanus str.
Walvis Bay]
Length = 1044
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 248/743 (33%), Positives = 380/743 (51%), Gaps = 79/743 (10%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATM 278
Q+VH E + R L + + L S ISKLYSHQA + AG++VVVAT
Sbjct: 21 QVVHHEILPERAESLAQTRRPWPRLVQGLLASRSISKLYSHQAMACDLVRAGRHVVVATP 80
Query: 279 TSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIG--VY 336
T+SGKSL Y LPV+E S AL++FP KALAQDQLR+ +T + G +Y
Sbjct: 81 TASGKSLTYTLPVIEQSLAMPDSKALWLFPLKALAQDQLRSFNELTALLPPDLHPGAAIY 140
Query: 337 DGDTTQKDRMWLR-DNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLI 395
DGDT R LR D +L+TNP+MLH+S+LP+H ++ + L
Sbjct: 141 DGDTPDHRRRKLREDPPGVLLTNPEMLHLSLLPHHSTWAAFWAGLT-------------- 186
Query: 396 FLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCME 455
VV+DE H Y+G G H A++ RR+ R+C + YG+ P+FVF +AT NP E
Sbjct: 187 -----HVVVDEVHTYRGVMGSHMAMLFRRMLRMCRY-YGAQPTFVFCSATIGNPGELANL 240
Query: 456 LANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVS 515
L NL E+I + G+P ++ F+ +P + + +
Sbjct: 241 LTNLQA-EVILDSGAPQGRRHFLFMDPAASAATAAIR----------------------- 276
Query: 516 YLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRI 575
L + ++ GLR I +C+SRK+ EL+ + E E + I YRAG++ E+RR +
Sbjct: 277 -LLRQALERGLRTIVYCQSRKMTELIAIWAAEKSGE----FKERISAYRAGFLPEERREV 331
Query: 576 ERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVY 635
E G L V T+ALELGID+G +D+ + +G+PG+I + Q+ GR GR+++ S V
Sbjct: 332 ETRMASGDLLAVVTTSALELGIDIGSLDLCILVGYPGTIMATLQRGGRVGRKQQESAVVL 391
Query: 636 VAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFG- 694
+A E LDQYF+++PE F P E ++ N ++ +HL CAA E PL + DE F
Sbjct: 392 IAQEDALDQYFLRHPEDFFNRPSESAVLNPANPVIVTRHLDCAAAELPLRM--DEPMFQE 449
Query: 695 SGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN 754
G++ + +G L SA + K P + +R +D Q
Sbjct: 450 EGIAQVAQDMLQQGMLL------QSADGRQLHSRRKRPHREVDLRGAGGTMVIEVDGQ-- 501
Query: 755 EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTD-- 812
V+ +++E +AF + ++GAVY+H+G T++V L+L + AL KA + Y+T+ R D
Sbjct: 502 -VIGQVDEYRAFREAHDGAVYLHRGETFVVDRLDLPGRRALAHKARVGYYTRVRGEKDTE 560
Query: 813 -IHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKY 871
+ V G T++ +L VT T G+ + G + V L LP
Sbjct: 561 ILRVHGSRQVLDTRVHHGRL----------RVTETITGYEKRRTSDGKMLTIVPLELPPQ 610
Query: 872 SYESQAVWIQVPQSVKAVVEQN-FSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPH 930
SYE++ +WI++P ++A E+ F G+HA HA + ++P+ V C+ +DL P
Sbjct: 611 SYETEGLWIEIPSEIQAAAEEERHHFMGGIHAVEHAAIGILPLLVMCDRNDLG-GISIPF 669
Query: 931 DSRYFPERILLYDRHPGGTGVSK 953
+ + +YD PGG G+S+
Sbjct: 670 HPQVNSATVFVYDGAPGGVGLSR 692
>gi|326383467|ref|ZP_08205154.1| DEAD/DEAH box helicase domain-containing protein [Gordonia
neofelifaecis NRRL B-59395]
gi|326197873|gb|EGD55060.1| DEAD/DEAH box helicase domain-containing protein [Gordonia
neofelifaecis NRRL B-59395]
Length = 770
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 247/749 (32%), Positives = 387/749 (51%), Gaps = 71/749 (9%)
Query: 218 GQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVAT 277
G + H+ I +R A + E PD + + A G+ + + HQ E+ + + ++V V T
Sbjct: 23 GPLTHMTVIGSRSAEVTEWPDWVHPAVRDAFVERGVRRPWRHQTEAASLAASSRHVCVCT 82
Query: 278 MTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRA---LLAMTKAFDASIDIG 334
T+SGKSL Y LPVL + D +S+ALY+ PTKAL DQLR+ L+A F A +
Sbjct: 83 GTASGKSLAYQLPVLTTFADDHNSTALYLSPTKALGTDQLRSVAQLIAGRPEF-AHLQPC 141
Query: 335 VYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYL 394
YDGDT + R W R ++R + TNPDML + I H ++ AF
Sbjct: 142 SYDGDTDSELRQWARMHSRWIFTNPDMLQIGITSTHPRWR---------AF--------- 183
Query: 395 IFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCM 454
F +R++V+DE H Y+G FG HTAL+L+R R+ YG+DP + ++AT +NP +
Sbjct: 184 -FAKLRYIVVDECHHYRGVFGSHTALVLQRTLRIARK-YGADPVVIGASATVSNPAQALS 241
Query: 455 ELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEV 514
L + + + D SP ++ +W P L V + N A S SE
Sbjct: 242 RLIGEDVVAVTE-DASPHGERTVAMWEP-GFLDEVTGE---------NDAPVRRSAGSEA 290
Query: 515 SYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRR 574
+ L A+ V G R + F RSR+ E+ R+IL + AP LVD + YRAGY+A+DRRR
Sbjct: 291 ARLLADFVIEGARTLCFVRSRRGVEVTAVRARQILADAAPDLVDRVAAYRAGYLADDRRR 350
Query: 575 IERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAV 634
+E+ G+L GVA TNALELG+D+ +D + G+PG++AS WQQAGR+GRR S+ V
Sbjct: 351 LEQAISDGELLGVATTNALELGVDISGLDAVVVAGYPGTVASFWQQAGRAGRRGEGSIVV 410
Query: 635 YVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFG 694
+A + PLD Y + +PE L + +E D N VL H++CAA E PL+ + F
Sbjct: 411 MIARDDPLDTYLVHHPEALLERAVEATVTDPTNPFVLGPHMLCAATEFPLTE-EEVAAFS 469
Query: 695 SG------LSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEV 748
+G ++G + G+ ++ P LD P I IR + +
Sbjct: 470 AGEVVAELTAAGKLKRRKAGWYAA-PGLD--------------PHGDIDIRGGIGGQVLI 514
Query: 749 IDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTR 808
+D ++ +L ++ ++A VY GAVY+HQG +++V EL+L +AL + + T R
Sbjct: 515 VDATTSRLLGTVDTARAMTSVYPGAVYLHQGESFVVDELDLDDGLALTHPEEPDWTTSAR 574
Query: 809 DYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYL 868
+ +D+ + ++ + T +++ VT G+ R SG I D+V L L
Sbjct: 575 EVSDVTIIETHD-------RRTFGPLTVASVSVEVTNQVVGYLRKAL-SGEILDSVPLDL 626
Query: 869 PKYSYESQAVWIQVPQSVKAVVEQNFS---FRSGLHAASHALLHVVPIYVRCNFSDLAPE 925
P+++ ++AV + Q +A+++ + F LHAA HA + ++ + C+ D+
Sbjct: 627 PEHTLTTRAVMYTLTQ--EAMIDAGIALDKFPGALHAAEHAAIGMLGLVATCDRWDIGGL 684
Query: 926 CPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
H P + +YD PGG G + +
Sbjct: 685 STAMHPGTGLPT-VFVYDGFPGGAGFADR 712
>gi|407278115|ref|ZP_11106585.1| dead/deah box helicase [Rhodococcus sp. P14]
Length = 781
Score = 398 bits (1022), Expect = e-107, Method: Compositional matrix adjust.
Identities = 267/774 (34%), Positives = 399/774 (51%), Gaps = 56/774 (7%)
Query: 185 TSSSHSFQRRCSDKSQLLPLEMVEHLRKGI-GSQGQMVHVEDISARKAVLVEIPDALLDN 243
TSS H +R D E++E + +G S+ + H ++ AR+ + PD D
Sbjct: 2 TSSPH--RRPVGDGPTSFGHELLERVLEGTPASEHPLTHSAELPAREVRHTDWPDWASDA 59
Query: 244 TKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSA 303
AL++TG+ + +SHQ + + G++VVV+T T+SGKSL Y LPVL AL D ++A
Sbjct: 60 VVRALRATGVPRPWSHQRAAADVAAGGEHVVVSTGTASGKSLAYQLPVLTALVEDPHATA 119
Query: 304 LYMFPTKALAQDQLRALLAMTKAFD--ASIDIGVYDGDTTQKDRMWLRDNARLLITNPDM 361
LY+ PTKAL DQLRA+ +T A + YDGDT+ + R W R ++R + TNPDM
Sbjct: 120 LYLSPTKALCADQLRAVTDVTAAEPELGRVHACAYDGDTSTELRQWARSHSRWIFTNPDM 179
Query: 362 LHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALI 421
LHMS+LP H ++SR F +R+VV+DE H+Y+G FG + AL+
Sbjct: 180 LHMSMLPGHARWSRF-------------------FRRLRYVVVDECHSYRGVFGSNVALV 220
Query: 422 LRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWN 481
LRRL R+ + YG+ P FV ++AT+A+P L E + DGSP + LW
Sbjct: 221 LRRLRRIAA-RYGARPVFVLASATTADPGAAASRLVGAPCRE-VTEDGSPHGPRTVALWE 278
Query: 482 PTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELV 541
P L V ++ + R AA +E + + A++V G R +AF RSR+ E
Sbjct: 279 P-PLLEQVTGENGAPV---RRAAG------TEAARILADLVVEGARTLAFVRSRRGAEFT 328
Query: 542 LSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGH 601
+ +L E AP LVD + YRAGY+AE+RR +E G+L G A+TNALELG+D+
Sbjct: 329 ALGAQRLLAEAAPELVDRVAAYRAGYLAEERRELEAALADGRLLGAASTNALELGMDIAG 388
Query: 602 IDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECC 661
+D + GFPG++AS WQQAGR+GRR SL V VA + PLD Y + +P L P+E
Sbjct: 389 LDAVVVAGFPGTVASFWQQAGRAGRRGAGSLVVLVARDDPLDTYLVHHPAALLDKPVEAT 448
Query: 662 HIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAK 721
D N VL L+CAALE PLS E++ G + + L +G + P
Sbjct: 449 VTDPTNPYVLGPQLLCAALELPLSDAEVEEF---GAADVLAALAAQGAIRRRPH------ 499
Query: 722 IFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHT 781
++ + P I IR + +++ + +L ++ +A V+ GAVY+H+G +
Sbjct: 500 -GWFVTPDTRPHSDIDIRGGIGTQIAIVESDTGRMLGTVDGGRAPATVHPGAVYLHRGES 558
Query: 782 YLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALAC 841
++V EL+L IAL + ++ T R+ TDI V+ + L T +
Sbjct: 559 FVVDELHLDDGIALVHAEEPEWSTSAREITDIVVT-------AVTEQRSLGPVTVGLVEV 611
Query: 842 TVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQV-PQSVKAVVEQNFSFRSGL 900
VT + R SG + D+ EL +P ++AV V P+ + L
Sbjct: 612 EVTHQVVSYLRRLP-SGEVLDSTELDMPSQCLPTRAVMYTVTPELLDRCGIGPERVPGAL 670
Query: 901 HAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
HAA HA + ++P+ C+ D+ H P + +YD HPGG G + +
Sbjct: 671 HAAEHAAIGLLPLVATCDRWDIGGVSTAVHPDTGLPT-VFVYDGHPGGAGFADR 723
>gi|154149825|ref|YP_001403443.1| DEAD/DEAH box helicase [Methanoregula boonei 6A8]
gi|153998377|gb|ABS54800.1| DEAD/DEAH box helicase domain protein [Methanoregula boonei 6A8]
Length = 773
Score = 398 bits (1022), Expect = e-107, Method: Compositional matrix adjust.
Identities = 253/721 (35%), Positives = 394/721 (54%), Gaps = 67/721 (9%)
Query: 236 IPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL 295
+PDAL + L GI +L++HQ E++ +NV++ T T+SGK+L +NLPV E +
Sbjct: 40 LPDAL----DAYLAHAGI-RLFTHQCEAVNLLREHRNVIITTPTASGKTLAFNLPVFERM 94
Query: 296 SHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLL 355
S D + ALY++PTKALA DQL LLAM K + +YDGDT Q R +R++AR++
Sbjct: 95 SADPDARALYLYPTKALANDQLATLLAMEKFTGIPVKSAIYDGDTPQSKRSAIREHARIV 154
Query: 356 ITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFG 415
I+NP LH +L +H ++S SNL+ +VV+DEAH Y+G FG
Sbjct: 155 ISNPYELH-QVLSWHSKWSPFFSNLQ-------------------YVVLDEAHRYRGIFG 194
Query: 416 CHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQK 475
AL++RRL RL + YG+DP FV S+AT ANP E LA L ++ +++DGSP ++
Sbjct: 195 SQIALLVRRLRRLARY-YGTDPQFVLSSATLANPEEFAKRLAGLPFVQ-VESDGSPRGRR 252
Query: 476 LFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSR 535
FVL+NP D R+A ++ L V+ L+ + F SR
Sbjct: 253 HFVLYNPF-----------FDGVGERSAHQESKD-------LLVSCVKGDLQALCFAGSR 294
Query: 536 KLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALEL 595
K+ ELV + +E L +P L +S+ YRAGY+ E+RR IE G ++ GV +TNALEL
Sbjct: 295 KIAELVALWAKEDLRRNSPRLAESVLAYRAGYLPEERRWIESRLKGREIRGVVSTNALEL 354
Query: 596 GIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFK 655
GID+G +D + G+PG++ S QQAGR+GR+ SLAV VA PLDQYFM +PE+ F
Sbjct: 355 GIDIGSLDAVIIDGYPGTMMSTRQQAGRAGRKAGESLAVLVAQANPLDQYFMHHPEEFFS 414
Query: 656 SPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPS 715
P E ID QN ++ HL+CAA E PL D ++FG S ++ L G LS
Sbjct: 415 RPHEHAIIDTQNPYIVSGHLLCAAAELPLHEEKDREFFGDRFSPVLSDLAGSGLLS---- 470
Query: 716 LDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVY 775
+++ F Y G + + +++ + +E + + + VLE ++ ++A+ + ++GA+
Sbjct: 471 --RTSRGFVYAGRGRA-AEAVTLDGMAAESFRI--LCEGRVLETMDRAQAYREAHKGAIM 525
Query: 776 MHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTT 835
+HQG TY+V E++L + + D+ Y+T+ T + V + ++ T
Sbjct: 526 LHQGITYVVNEMDLENHTVRVSETDVDYYTQPLKDTSLKV-------LETLETREIHGVT 578
Query: 836 AQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKA-VVEQNF 894
A T + Y++ +G + L LP ++ ++A W+ VP+++ V
Sbjct: 579 C-AFGNVEVTERYTAYKIKKGD-TVLGVEPLDLPPITFRTKAFWLVVPETLATPVCASGL 636
Query: 895 SFRSGLHAASHALLHVVPIYVRCNFSDLAP-ECPNPHDSRYFPERILLYDRHPGGTGVSK 953
GLH A HAL+ ++P +V C+ D+ CP +S I +YD + GG G+++
Sbjct: 637 DLAGGLHGAEHALIALMPFFVLCDRWDIGGLSCPVFGESG--EPMIFIYDGYEGGIGLAE 694
Query: 954 Q 954
+
Sbjct: 695 K 695
>gi|269836961|ref|YP_003319189.1| DEAD/DEAH box helicase [Sphaerobacter thermophilus DSM 20745]
gi|269786224|gb|ACZ38367.1| DEAD/DEAH box helicase domain protein [Sphaerobacter thermophilus
DSM 20745]
Length = 779
Score = 397 bits (1020), Expect = e-107, Method: Compositional matrix adjust.
Identities = 249/740 (33%), Positives = 380/740 (51%), Gaps = 67/740 (9%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
I R A V +P+ L AL++ GI +LYSHQAE+ + G++ V T T+SGK+L
Sbjct: 33 IPERPAETVPLPEDLEPRLAEALRARGIQQLYSHQAEAFASVRQGRHTAVVTGTASGKTL 92
Query: 286 CYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDR 345
CY LPVL+A+ D ++ ALY+FPTKALAQDQ L ++ +A A I YDGDT R
Sbjct: 93 CYTLPVLDAILRDPTARALYLFPTKALAQDQYANLHSLIEAAGADIKTHTYDGDTPANIR 152
Query: 346 MWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVID 405
+R ++ITNPDMLH ILP+H ++ + NL RFVVID
Sbjct: 153 RIIRTAGHVVITNPDMLHSGILPHHTKWHNLFENL-------------------RFVVID 193
Query: 406 EAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELI 465
E H Y+G FG H A ++RRL R+C H YGS P F+ ++AT ANP E L + +I
Sbjct: 194 EMHGYRGVFGSHVANVIRRLKRICQH-YGSSPVFILASATIANPEELARRLIE-EDVHVI 251
Query: 466 QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHG 525
DG+P ++ F +NP V+N+ S + E + + +E+V+ G
Sbjct: 252 DRDGAPHGRREFAFFNP-----PVVNQQ----------LGIRRSVVLEATRIASELVRAG 296
Query: 526 LRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLC 585
+ I F R+R E++L+Y R+ L + +SI YR GY+ RR IER G++
Sbjct: 297 VHTIVFARARATAEVMLTYLRQAL-PSGIGTEESIRGYRGGYLPRQRREIERGLREGRVR 355
Query: 586 GVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQY 645
V +TNALELG+D+G +D + G+PG++AS WQQAGR+GRR+ PSLAV VA PLDQ+
Sbjct: 356 AVVSTNALELGVDIGSLDACVMTGYPGTVASTWQQAGRAGRRDAPSLAVLVASSNPLDQF 415
Query: 646 FMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLK 705
++ P+ F+ P E I+ N VL HL CAA E P D + FG+ + +
Sbjct: 416 IVQNPDYFFQRPPEHGLINPDNLLVLVDHLKCAAFELPFK---DGQRFGN-----VDPTE 467
Query: 706 NRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQS---NEVLEEIEE 762
YL + L + + Y + P+ IS+R + +ID V+ E++
Sbjct: 468 VLEYLEEERVLHHAGDTW-YWTADTYPAEEISLRTAARDNVVIIDTGEPGKPRVIGEVDS 526
Query: 763 SKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAY 822
A V+ A+YMH+G Y V L+ K A D+ Y+T + V
Sbjct: 527 FAAPMLVHTEAIYMHEGQQYHVDRLDWDEKKAYVHPVDVDYYTDASMSVRVQV------- 579
Query: 823 ATKISKDQ--LTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWI 880
+ S+ + + + L + T + +L+ I + V +LP+ + A W
Sbjct: 580 IEQFSEGEPWAERHHGEVLVGAIVTQYKKI-KLYTHENIGWGRV--HLPEQQMHTSAYWF 636
Query: 881 QVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLA--PECPNPHDSRYFPER 938
+P+ A + ++ + L ++ + +V P+++ C+ D+ P+ +P R
Sbjct: 637 SLPEHATARM-RSADLQGALVGLANVVGNVAPLFLMCDPRDIGVYPQVRSPFTQR---ST 692
Query: 939 ILLYDRHPGGTGVSKQVTDM 958
I +YD+ PGG G S ++ D+
Sbjct: 693 IFVYDQIPGGIGFSPKLYDL 712
>gi|297584196|ref|YP_003699976.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
selenitireducens MLS10]
gi|297142653|gb|ADH99410.1| DEAD/DEAH box helicase domain protein [Bacillus selenitireducens
MLS10]
Length = 756
Score = 397 bits (1020), Expect = e-107, Method: Compositional matrix adjust.
Identities = 251/740 (33%), Positives = 383/740 (51%), Gaps = 60/740 (8%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAG-KNVVVATM 278
++H + + ++AV P L + ALK+ GI +LYSHQ + S+ KN+V T
Sbjct: 20 VIHWQTMPEKEAVFAPFPHVLDICIQEALKNRGIHQLYSHQRSAFNESVNNNKNIVAVTP 79
Query: 279 TSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDG 338
T+SGK+LCYNLPVL S + + ALY+FPTKALAQDQ+ L + + D I YDG
Sbjct: 80 TASGKTLCYNLPVLHRFSKNHDARALYLFPTKALAQDQMSELNGLIEDMDMEIRSYTYDG 139
Query: 339 DTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLF 398
DT R +R ++++NPDMLH +ILP+H ++ + NL
Sbjct: 140 DTPPAIRQTIRKAGHIVLSNPDMLHSAILPHHTKWISLFENLET---------------- 183
Query: 399 IRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELAN 458
VVIDE H Y+G FG H A ++RRL R+C + YGSDP+F+ ++AT ANP E EL
Sbjct: 184 ---VVIDELHTYRGVFGSHVANVIRRLKRICRY-YGSDPAFICTSATIANPVELAEELTG 239
Query: 459 LSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLF 518
++LI N+G+P +K FVL+NP L VLN R +A K V+ L
Sbjct: 240 -GPVQLIDNNGAPAGRKHFVLYNP-PVLHPVLN--------VRKSATKM------VNQLA 283
Query: 519 AEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERD 578
++ ++ G++ I F RSR EL+LS+ +++ + + I YR GY+ RR+IE+D
Sbjct: 284 SDFLKDGIQTIVFARSRVRVELILSHLQQLTSGSIRQ--NRIRGYRGGYLPSQRRQIEKD 341
Query: 579 FFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAF 638
G+ GV +TNALELG+D+G + V + G+PGSIAS WQQAGR+GRR+ SL + VA
Sbjct: 342 LRSGETIGVVSTNALELGVDIGQLQVCVMTGYPGSIASSWQQAGRAGRRQDESLVIMVAS 401
Query: 639 EGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLS 698
PLDQY +P+ F E I+ N +L HL CAA E P + + F
Sbjct: 402 SSPLDQYLFSHPDFFFDHSPETARINKDNLIILVDHLKCAAYELPFE---ENEAF----- 453
Query: 699 SGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDM---QSNE 755
G+ YL L S + F ++ ++ P+H IS+R+ E +ID ++
Sbjct: 454 DGVEVTDILEYLMDQRVLFKSRQQFHWM-NDAFPAHNISLRSAAQENVIIIDQSVTSKHQ 512
Query: 756 VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHV 815
V+ E++ A ++E A+Y+H+G + V+ L+ K A ++ D+ YFT + V
Sbjct: 513 VIGEMDTFSAMTLLHEEAIYLHEGTQFQVEHLDWDEKKAFVREVDVDYFTDANLAVQLKV 572
Query: 816 SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYES 875
+ A + A+A + GSG I +LP+ +
Sbjct: 573 LEVDQEKALGAHRAVYGDVMVTAMATLYKKMKLDTFENI-GSGPI------HLPEQELHT 625
Query: 876 QAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYF 935
+ I + + + ++ ++ L + +H + HV + V C+ +DL
Sbjct: 626 NGIGIHLNEDQMESLSED-AWEQVLASLAHVMKHVSAVEVMCDTADLYTSAQVKETLTRQ 684
Query: 936 PERILLYDRHPGGTGVSKQV 955
P I LYDR+PGG G+S+++
Sbjct: 685 P-TIFLYDRYPGGAGLSERI 703
>gi|89099861|ref|ZP_01172733.1| YprA [Bacillus sp. NRRL B-14911]
gi|89085419|gb|EAR64548.1| YprA [Bacillus sp. NRRL B-14911]
Length = 767
Score = 397 bits (1020), Expect = e-107, Method: Compositional matrix adjust.
Identities = 251/760 (33%), Positives = 399/760 (52%), Gaps = 72/760 (9%)
Query: 204 LEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAES 263
L+M E + I VH I ++A ++PD + + ++AL+ GIS+LY+HQ +
Sbjct: 14 LKMTEEFKDNI------VHWHTIEEKEAKTEDLPDDIHPSLRNALEKRGISRLYTHQRSA 67
Query: 264 IMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAM 323
A+ GK++V T T+SGK+LCYNLPVL+ D + ALY+FPTKALAQDQ + +
Sbjct: 68 YAAASEGKSLVAVTPTASGKTLCYNLPVLQTAISDPKARALYIFPTKALAQDQKSEINEL 127
Query: 324 TKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLI 383
+ + ++ YDGDT R +R ++ITNPDMLH +ILP+H ++ + NL
Sbjct: 128 IQEAELPVNSYTYDGDTPANIREKVRKAGHVVITNPDMLHSAILPHHTKWVSLFENL--- 184
Query: 384 AFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFST 443
++VVIDE H Y+G FG H A ++RRL R+C YGSDP F+ ++
Sbjct: 185 ----------------KYVVIDEVHIYRGVFGSHVANVIRRLRRIC-RFYGSDPLFICTS 227
Query: 444 ATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNA 503
AT ANP E L +ELI N+G+P +K F+ +NP ++N M+ R+A
Sbjct: 228 ATIANPLELAENLTE-KKMELIDNNGAPSGRKHFLFYNP-----PIVN---IPMNIRRSA 278
Query: 504 ANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILE-ETAPHLVDSICV 562
E L ++++ ++ I F RSR E++L+Y +E+++ + P +I
Sbjct: 279 T-------LEARKLAGRLLKNRIQTIVFARSRVRVEILLTYLQELVKHQLGP---KAIRG 328
Query: 563 YRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAG 622
YR GY+ +RR IE+ G++ GV +TNALELG+D+G + V + G+PGSIAS WQQAG
Sbjct: 329 YRGGYLPTERRAIEKGLRAGEIYGVVSTNALELGVDIGQLQVCIMTGYPGSIASSWQQAG 388
Query: 623 RSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEH 682
R+GRR SL + VA PLDQY ++ P+ F E I+ N +L H+ CAA E
Sbjct: 389 RAGRRHGESLVILVASSSPLDQYVIQNPDYFFNKSPETARINPDNLIILIDHMKCAAYEL 448
Query: 683 PLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIE 742
P Y EK FG+ + + + L + + ++ ++ P+H IS+R+
Sbjct: 449 PFK--YGEK-FGTADTEELLEYLTEERV-----LYQNGDKWHWM-NDSFPAHNISLRSAS 499
Query: 743 SERYEVI---DMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKA 799
E +I D+ + +V+ E++ A +++ A+Y+HQG + V+ L+ K A ++
Sbjct: 500 QENVIIIDQSDIANVKVIGEMDRFSAMTLLHDEAIYLHQGTQFQVEYLDWDEKKAYVREV 559
Query: 800 DLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGI 859
D+ YFT ++ V + + + + A+A F + GSG
Sbjct: 560 DVDYFTDANLAVELKVLEEDKNRSRGEMEIGYGDVSVLAMATIFKKIKFETHENI-GSGP 618
Query: 860 IFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNF 919
I +LP+ + + WI + + E GL +HAL H+ P++V C+
Sbjct: 619 I------HLPQEELHTSSAWISIGKEQIQFDEDRIE--EGLIGTAHALKHIAPLFVMCDP 670
Query: 920 SDL--APECPNPHDSRYFPERILLYDRHPGGTGVSKQVTD 957
D+ P+ H+ + I YDR+PGG G+S+++ D
Sbjct: 671 QDIFVVPQVKAAHNEK---PTIFFYDRYPGGIGLSEKLYD 707
>gi|452960855|gb|EME66164.1| dead/deah box helicase [Rhodococcus ruber BKS 20-38]
Length = 781
Score = 397 bits (1020), Expect = e-107, Method: Compositional matrix adjust.
Identities = 267/774 (34%), Positives = 398/774 (51%), Gaps = 56/774 (7%)
Query: 185 TSSSHSFQRRCSDKSQLLPLEMVEHLRKGI-GSQGQMVHVEDISARKAVLVEIPDALLDN 243
TSS H +R D E++E + G ++ + H ++ AR + PD D
Sbjct: 2 TSSPH--RRPVGDGPTSFGHELLERVLAGTPATEHPLTHSAELPARDVRHTDWPDWASDA 59
Query: 244 TKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSA 303
AL++TG+ + +SHQ + + G++VVV+T T+SGKSL Y LPVL AL D ++A
Sbjct: 60 VVRALRATGVPQPWSHQRAAADLATGGEHVVVSTGTASGKSLAYQLPVLTALVEDPHATA 119
Query: 304 LYMFPTKALAQDQLRALLAMTKAFD--ASIDIGVYDGDTTQKDRMWLRDNARLLITNPDM 361
LY+ PTKAL DQLRA+ +T A + YDGDT+ + R W R ++R + TNPDM
Sbjct: 120 LYLSPTKALCADQLRAVTDVTAAEPELGRVHACAYDGDTSTELRQWARSHSRWIFTNPDM 179
Query: 362 LHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALI 421
LHMS+LP H ++SR F +R+VV+DE H+Y+G FG + AL+
Sbjct: 180 LHMSMLPGHARWSRF-------------------FRRLRYVVVDECHSYRGVFGSNVALV 220
Query: 422 LRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWN 481
LRRL R+ + YG+ P FV ++AT+A+P L E + DGSP + LW
Sbjct: 221 LRRLRRIAA-RYGARPVFVLASATTADPGAAASRLVGAPCRE-VTEDGSPHGPRTVALWE 278
Query: 482 PTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELV 541
P L V ++ + R AA +E + + A++V G R +AF RSR+ EL
Sbjct: 279 P-PLLEQVTGENGAPV---RRAAG------TEAARILADLVVEGARTLAFVRSRRGAELT 328
Query: 542 LSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGH 601
+ +L E AP LVD + YRAGY+AE+RR +E G+L G A+TNALELG+D+
Sbjct: 329 ALGAQRLLAEAAPELVDRVAAYRAGYLAEERRELEAALADGRLLGAASTNALELGMDIAG 388
Query: 602 IDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECC 661
+D + GFPG++AS WQQAGR+GRR SL V VA + PLD Y + +P L P+E
Sbjct: 389 LDAVVVAGFPGTVASFWQQAGRAGRRGAGSLVVLVARDDPLDTYLVHHPAALLDKPVEAT 448
Query: 662 HIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAK 721
D N VL L+CAALE PL+ E++ G + + L +G + P
Sbjct: 449 VTDPTNPYVLGPQLLCAALELPLTDAEVEEF---GAADVLAALAAQGAIRRRPH------ 499
Query: 722 IFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHT 781
++ + P I IR + +++ + +L ++ +A V+ GAVY+H+G +
Sbjct: 500 -GWFVTPDTRPHSDIDIRGGIGTQIAIVESDTGRMLGTVDGGRAPATVHPGAVYLHRGES 558
Query: 782 YLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALAC 841
++V EL+L IAL D ++ T R+ TDI V+ + L T +
Sbjct: 559 FVVDELHLDDGIALVHAEDPEWSTSAREITDIVVT-------AVTEQRSLGPVTVALVEV 611
Query: 842 TVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQV-PQSVKAVVEQNFSFRSGL 900
VT + R SG + D+ EL +P ++AV V P+ + L
Sbjct: 612 EVTHQVVSYLRRLP-SGEVLDSTELDMPSQCLPTRAVMYTVTPELLDRCGIGPERVPGAL 670
Query: 901 HAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
HAA HA + ++P+ C+ D+ H P + +YD HPGG G + +
Sbjct: 671 HAAEHAAIGLLPLVATCDRWDIGGVSTALHPDTGLPT-VFVYDGHPGGAGFADR 723
>gi|334134719|ref|ZP_08508223.1| DEAD/DEAH box helicase [Paenibacillus sp. HGF7]
gi|333607874|gb|EGL19184.1| DEAD/DEAH box helicase [Paenibacillus sp. HGF7]
Length = 748
Score = 397 bits (1019), Expect = e-107, Method: Compositional matrix adjust.
Identities = 251/755 (33%), Positives = 400/755 (52%), Gaps = 66/755 (8%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E+++ LR + +V+ +I ++A IP ++ KSAL GIS+LY+HQ +
Sbjct: 8 ELIQELR----TDENIVNWHEIEPQEAKTKAIPGSVDTRIKSALAKRGISELYTHQHTAY 63
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
G+N+V T T+SGK+LCYNLPVL+A++ D +S ALY+FPTKALAQDQ L +
Sbjct: 64 ETVHTGQNIVAVTPTASGKTLCYNLPVLQAIADDDTSRALYLFPTKALAQDQKSELNEII 123
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
I YDGDT+ R +R ++ITNPDMLH +ILP+H ++ + NL
Sbjct: 124 GEMGIDIKSYTYDGDTSPAIRQIVRKAGHIVITNPDMLHSAILPHHTKWVSLFENL---- 179
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
+++VIDE H Y+G FG H A ++RRL R+C YGSDP F+ ++A
Sbjct: 180 ---------------KYIVIDELHTYRGVFGSHVANVIRRLKRICK-FYGSDPVFICTSA 223
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T ANP+E +L S + LI ++G+P +K FV +NP V+NK ++ R+AA
Sbjct: 224 TIANPKELAEQLTG-SPMRLIDDNGAPRGRKHFVFYNP-----PVVNKP---LNIRRSAA 274
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYR 564
+E + L + +++ ++ I F RSR E++LS +E+++ SI YR
Sbjct: 275 -------AEANNLAKQFLKNKIQTIVFARSRVRVEIILSRIQELVKNELG--TKSIRGYR 325
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
GY+ + RR IER G++ GV +TNALELG+D+G + V + G+PGSIAS WQQAGR+
Sbjct: 326 GGYLPKQRREIERGLRAGEILGVVSTNALELGVDIGQLQVCIMTGYPGSIASTWQQAGRA 385
Query: 625 GRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
GRR +L V VA P+DQY ++ P+ F E I+ +N +L HL CAA E P
Sbjct: 386 GRRHGEALIVMVASSTPIDQYVVQNPDYFFDRTPEAARINPENLIILVDHLKCAAYELPF 445
Query: 685 SLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESE 744
+ + FG + I +L + L + F Y + P++ IS+R+ E
Sbjct: 446 K---ETEEFGPLEVAEIME-----FLVEERVLHHNGDTF-YWASQSFPANEISLRSASQE 496
Query: 745 RYEVIDMQSN----EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKAD 800
++D QS+ ++ E++ A +++ A+Y+H+G Y V++L+ K A ++ D
Sbjct: 497 NVVIVD-QSDVANVRIIGEMDRFSAMTLLHDEAIYLHEGVQYQVEKLDWEHKKAYVREVD 555
Query: 801 LKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGII 860
++Y+T + V + S T A+ T F +L G I
Sbjct: 556 VEYYTDANLAIQLKVLEIDKTSDRDRSSLNFGDVTINAIP-----TIFKKIKLTTGENI- 609
Query: 861 FDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFS 920
+ ++LP+ + A W+++ + V + + L ++ + H+VP+ V C+ +
Sbjct: 610 -GSGPIHLPEEELHTSAAWVELKEPNLEVGTK--ALEQILWGIANVMKHIVPVLVMCDRN 666
Query: 921 DLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
D+ + P I LYD +PGG G++++V
Sbjct: 667 DVHVVSQIKANHTGLP-TIFLYDHYPGGIGLAEEV 700
>gi|242281222|ref|YP_002993351.1| DEAD/DEAH box helicase [Desulfovibrio salexigens DSM 2638]
gi|242124116|gb|ACS81812.1| DEAD/DEAH box helicase domain protein [Desulfovibrio salexigens DSM
2638]
Length = 958
Score = 397 bits (1019), Expect = e-107, Method: Compositional matrix adjust.
Identities = 245/744 (32%), Positives = 377/744 (50%), Gaps = 77/744 (10%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATM 278
Q+VH + E + S L I +LYSHQAE+ + AG+NVVVAT
Sbjct: 23 QVVHHRTMDGTDPSYGEPRRPFSPSVNSVLGFRNIEQLYSHQAEATDYARAGRNVVVATP 82
Query: 279 TSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFD--ASIDIGVY 336
T+SGK+L YNLPVLE D S ALY+FP KALAQDQL+ M A + +Y
Sbjct: 83 TASGKTLTYNLPVLEQCLRDPDSHALYLFPLKALAQDQLKTFNEMAALLPEHARPEAAIY 142
Query: 337 DGDTTQKDRMWLRDNA-RLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLI 395
DGDT+ R +RD +++TNP+MLH+S+LPYH +++ L+ L
Sbjct: 143 DGDTSPYRRKKIRDTPPAVILTNPEMLHLSMLPYHEKWAPFLAGLT-------------- 188
Query: 396 FLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCME 455
+V+DE H Y+G G H A++ RRL R+C + YG++PSF+FS+AT NP E C +
Sbjct: 189 -----HIVVDEVHTYRGVMGSHMAMVFRRLLRICKY-YGANPSFIFSSATVGNPAELCHD 242
Query: 456 LANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVS 515
L L + I G+ ++ ++ +NP SP S
Sbjct: 243 LTGLE-VNPITESGAASGKRNYIFFNPVV------------------------SPYSAAI 277
Query: 516 YLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRI 575
L + GLR I + +SRK+ EL+ + + E A D I YRAG++ E+RR I
Sbjct: 278 QLLKAGLARGLRTIVYTQSRKMTELIAMW----VNEKAGEYKDRISAYRAGFLPEERREI 333
Query: 576 ERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVY 635
E+ G+L V +T+ALELGID+G +D+ + +G+PGS+ + Q+ GR GR +R S +
Sbjct: 334 EQKMSSGELLAVISTSALELGIDIGGLDLCILVGYPGSVMATLQRGGRVGRSQRESAVIL 393
Query: 636 VAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLS----LIYDEK 691
+ E LDQYFM+ P+ F P E ++ N ++++HLVCAA E L L+ DE+
Sbjct: 394 IGQEDALDQYFMRNPDDFFSRPAENAVLNPYNPVIMQRHLVCAAAELTLRDNDYLLRDEE 453
Query: 692 YFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDM 751
+ +T L+ G L + D E K P +S+R S + + D
Sbjct: 454 -----IKKRVTELEKEGILLRNKRGD------EIYSTRKRPHRDVSLRGAGSTMH-IEDS 501
Query: 752 QSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYT 811
+ + I+E +A+ + +EGAVY+H+G TY +KEL+L +K K + Y+T+ R
Sbjct: 502 ANGTTIGTIDEVRAYSEAHEGAVYIHRGSTYCIKELDLGAKKIKAAKERVGYYTRARKNK 561
Query: 812 DIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKY 871
+ Y+ K ++ + VT G+ + G + V L +P
Sbjct: 562 STEIL---EVYSQK----KVFGIVMRFGRLRVTEQVTGYEKRAVKGGKLLGIVPLDMPPV 614
Query: 872 SYESQAVWIQVPQSVKAVVEQNF-SFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPH 930
+E+Q +W+++ +K E++F F G+HA HA + + P+ V + +DL H
Sbjct: 615 VFETQGLWMEISPEIKRRAEEDFIHFMGGIHAVEHAAIGITPLLVLTDRNDLGGISTPMH 674
Query: 931 DSRYFPERILLYDRHPGGTGVSKQ 954
+ P + +YD PGG G++ Q
Sbjct: 675 EQVDGPA-VFIYDGIPGGAGLTMQ 697
>gi|392374503|ref|YP_003206336.1| DEAD/DEAH box helicase [Candidatus Methylomirabilis oxyfera]
gi|258592196|emb|CBE68505.1| DEAD/DEAH box helicase domain protein [Candidatus Methylomirabilis
oxyfera]
Length = 980
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 260/772 (33%), Positives = 397/772 (51%), Gaps = 73/772 (9%)
Query: 186 SSSHSFQRRCSDKSQLLPLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTK 245
+++H R S S + V+ LR+G ++G VH++ I ++ ++ D L
Sbjct: 5 ATAHPAGRPISPPSTHEVDQFVDELRRGYATRGHPVHLKQIPSKSPSYADLSDPLPGPLL 64
Query: 246 SALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALY 305
L+ G+ +LY+HQ +I A+ GK+ +V T T+SGKSL Y LP+LE L D S+ AL
Sbjct: 65 DTLRKIGVDQLYTHQCAAIAAARTGKHPLVVTSTASGKSLTYLLPILEHLLTDRSARALL 124
Query: 306 MFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNA-RLLITNPDMLHM 364
+FP KAL QDQL+ L + ID + DGDT R LRDN +LL++NPDMLH+
Sbjct: 125 LFPIKALEQDQLKMLHTLIPP-GQGIDAAILDGDTPVSRRAKLRDNPPQLLLSNPDMLHL 183
Query: 365 SILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRR 424
S+LPYH Q+ NLR +VV+DE H Y+G FG H A +LRR
Sbjct: 184 SLLPYHAQWREFWRNLR-------------------YVVLDELHTYRGVFGSHIAHVLRR 224
Query: 425 LCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTS 484
L R+ + YG+ P F+ +AT ANP +L +L LI+ DG+P K F+L NP +
Sbjct: 225 LRRVAA-AYGAHPQFIACSATIANPLALSEQLTSLP-FHLIEADGAPQQGKRFLLINPVA 282
Query: 485 CLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSY 544
SP +E + L ++ GL+ IAF ++RK+ EL+ +
Sbjct: 283 ------------------------SPYTEATDLLLRCLRKGLKTIAFAKARKIAELIAMW 318
Query: 545 TREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDV 604
R+ ++T L + YRAG+ A++RR IER F +L GV T+ALELGIDVG +D
Sbjct: 319 ARQA-DQT---LGGRLAAYRAGFTADERRAIERGLFSEQLAGVVTTSALELGIDVGGLDA 374
Query: 605 TLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHID 664
L +G+PGSI S WQ+ GR GR R +L + VA LDQYF ++P+ F P E +D
Sbjct: 375 CLLVGYPGSITSTWQRGGRVGRGRREALIILVALPDALDQYFFRHPDDFFSRPYEAAIVD 434
Query: 665 AQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFE 724
NH++L HLV A E PL D+ ++ + I +L ++G L SA E
Sbjct: 435 PGNHQILAAHLVATASEMPLRT--DDSFYAAE-QDLIRSLHDQGRLL------LSADGTE 485
Query: 725 YIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLV 784
+ E+ P I+IR++ E ++D Q+ + I+ +A + + GA+Y+HQG Y
Sbjct: 486 WYARERHPQRRINIRSM-GEACAILD-QTGRAIGTIDGIRAIHECHPGAIYLHQGQQYES 543
Query: 785 KELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALA-CTV 843
L+L + + Y+T D V +I + + + L V
Sbjct: 544 MSLDLIQHKVHARPVTVDYYTAPLAEKDTEV--------LEILESRNHQGIPYHLGRLKV 595
Query: 844 TTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFS-FRSGLHA 902
T G+ R + +L LP ++E+ +W ++P +KA VE+ S F +HA
Sbjct: 596 TERVLGYERRRIFGQDKIGSYQLELPPQTFETVGLWFEIPDGLKATVEEAGSHFMGSIHA 655
Query: 903 ASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
HA++ + P+Y C+ SD+ P + + +YD +PGG G++++
Sbjct: 656 IEHAMIGLFPLYALCDRSDIG-GISYPIHPQVARAAVFIYDGYPGGIGLTER 706
>gi|256374438|ref|YP_003098098.1| DEAD/DEAH box helicase domain-containing protein [Actinosynnema
mirum DSM 43827]
gi|255918741|gb|ACU34252.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM
43827]
Length = 807
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 256/746 (34%), Positives = 372/746 (49%), Gaps = 59/746 (7%)
Query: 216 SQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVV 275
+ + H E++ + A V P SAL G+ +SHQA++ + +G++VVV
Sbjct: 19 GEAPLTHAEELPGQDAREVPWPSWAAPEVVSALVERGVPAPWSHQAQAAELAWSGRDVVV 78
Query: 276 ATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL--LAMTKAFDASIDI 333
AT T+SGKSL Y LPVL AL + ++ALY+ PTKAL DQ+RA+ LA+ AS
Sbjct: 79 ATGTASGKSLAYQLPVLSALVAEGRATALYLSPTKALGADQIRAVEELAVPGVRAAS--- 135
Query: 334 GVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVY 393
+DGDT +R W+R +A + +NPDMLH +LP H ++ R
Sbjct: 136 --FDGDTAMDERDWVRAHANWVFSNPDMLHRGVLPNHARWIRF----------------- 176
Query: 394 LIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHC 453
F + +VV+DE HAY+G FG H AL+LRRL + YG+DP FV ++AT A P
Sbjct: 177 --FRGLAYVVVDECHAYRGVFGSHVALLLRRLR-RVARRYGADPVFVLASATVAEPAASA 233
Query: 454 MELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISE 513
L +++ DGSP A ++ LW P L S L + N A S +E
Sbjct: 234 ERLVGKPCAAVVE-DGSPRAGRVVALWEPP--LLSEL--------EGENGAPVRRSAGAE 282
Query: 514 VSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRR 573
+ + A++V G R +AF RSR EL R +L E P L + YR GY+ E+RR
Sbjct: 283 TARILADLVVEGARSLAFVRSRVGAELTAMGARRVLAEVDPELPGRVAAYRGGYLPEERR 342
Query: 574 RIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLA 633
+ER G L GVA TNALELG+D+ +D + GFPG++AS WQQAGR+GR SL
Sbjct: 343 ALERALASGDLLGVATTNALELGVDIAGLDAVVVAGFPGTLASFWQQAGRAGRSGGDSLV 402
Query: 634 VYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYF 693
V+VA + PLD Y +PE + + P+E +D N VL HL CAA E PL+ E+
Sbjct: 403 VFVARDDPLDTYLAHHPEAVLRRPVEATVLDPSNPYVLAPHLACAAAELPLT----EECL 458
Query: 694 GSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQS 753
+G G + + L +D L Y + P + IR E+ V++ +
Sbjct: 459 -AGFGEGAREVVD--GLVADRVLRRRPNGGWYWTARERPQGQVDIRGSGGEQVVVVEGDT 515
Query: 754 NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDI 813
VL ++ + A + V+EGAVY+HQG +Y+V L+L + IAL + + T RD DI
Sbjct: 516 GRVLGTVDPAAAHWTVHEGAVYLHQGESYVVDSLDLEAGIALVRAERPDWSTTARDTKDI 575
Query: 814 HVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSY 873
V ++ +++ L T+ Y SG + D V L LP
Sbjct: 576 VV--------VRVEQERRFAGVRVCLGEVEVTSQVVSYLRKLPSGQVVDQVPLDLPAQVL 627
Query: 874 ESQAVWIQVPQSVKAVVEQNFSFR-----SGLHAASHALLHVVPIYVRCNFSDLAPECPN 928
++AVW V S+ LHAA HA + ++P++ C+ D+
Sbjct: 628 RTRAVWYAVDDSLLGSAPGGAGLAPATVPGALHAAEHAAIGLLPLFATCDRWDIGGVSTA 687
Query: 929 PHDSRYFPERILLYDRHPGGTGVSKQ 954
H + ++D HPGG G + +
Sbjct: 688 LHQD-TGEATVFVHDGHPGGAGFADR 712
>gi|359771464|ref|ZP_09274916.1| putative ATP-dependent helicase [Gordonia effusa NBRC 100432]
gi|359311524|dbj|GAB17694.1| putative ATP-dependent helicase [Gordonia effusa NBRC 100432]
Length = 776
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 239/737 (32%), Positives = 377/737 (51%), Gaps = 63/737 (8%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
I +R A + P + +A + GI++L+ HQA + + +G +V +AT T+SGKSL
Sbjct: 37 IPSRSASYLPWPTWVDQAIVNAFAAQGITQLWEHQARAAQLAHSGTHVALATGTASGKSL 96
Query: 286 CYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL--LAMTKAFDASIDIGVYDGDTTQK 343
Y +P+L + ++ ALY+ PTKAL DQLR+L L +A + + YDGDT
Sbjct: 97 AYQVPILSEFLTNPNACALYLAPTKALGADQLRSLATLLAGRAEFSHLQPCAYDGDTDPD 156
Query: 344 DRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVV 403
R W R ++R + TNPDM H+ IL HG++ NLR F+V
Sbjct: 157 IRQWARAHSRWIFTNPDMCHIGILSAHGKWQHFFRNLR-------------------FIV 197
Query: 404 IDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLE 463
+DE+H Y+G FG HTAL+LRR+ R+ + G+ P + ++AT+A+P L + E
Sbjct: 198 VDESHHYRGVFGSHTALVLRRILRI-ARALGAAPVVIAASATNADPAGSLTRLIG-APAE 255
Query: 464 LIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPI-----SEVSYLF 518
+ +D SP + LW P D A+ + +P+ ++ + L
Sbjct: 256 AVTDDTSPHGARTVALWEP---------------DFVPEASGENDAPVRRSAGADAARLL 300
Query: 519 AEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERD 578
A+ V G R + F RSR+ E+ R++L ++AP L + I YRAGY+A+DRRR+ER
Sbjct: 301 ADFVIEGARTLCFVRSRRGVEITARSARDLLAQSAPDLTERIGSYRAGYLADDRRRLERA 360
Query: 579 FFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAF 638
G+L GV TNALELG+D+ +D + G+PG++AS WQQAGR+GRR S V VA
Sbjct: 361 IADGELLGVTTTNALELGVDISGLDAVIVAGYPGTVASFWQQAGRAGRRGEASTVVLVAR 420
Query: 639 EGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLS 698
+ PLD Y + +PE L P+E ID N VL+ L+CAA E PL D + F +
Sbjct: 421 DDPLDTYLVHHPEALLDKPVEATVIDPSNPYVLDAQLLCAACELPLK-DQDIELFDA--Q 477
Query: 699 SGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLE 758
+ + L G L P+ Y+ P I IR + ++D ++ +L
Sbjct: 478 AAVERLSAAGLLKKRPA-------GWYVAAGLDPHSDIDIRGGIGGQVLIVDSTTSRLLG 530
Query: 759 EIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGG 818
I+ +A ++ GAV++HQG +Y+V EL+L +AL + + T R+ T+I ++
Sbjct: 531 TIDTGRAMSSIHAGAVHIHQGASYVVDELDLDEGLALLHPEEPDWTTSAREITEITIT-- 588
Query: 819 NNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAV 878
+ + T + VT G+ R +G + D+V L +P+ + ++AV
Sbjct: 589 -----NTVESQRFFDLTLALVEVDVTHQVVGYLRKLL-TGEVIDSVPLDMPEQTLRTRAV 642
Query: 879 -WIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPE 937
+ P +++A+ F LHAA HA + ++ + C+ D+ N H P
Sbjct: 643 MYTLTPDALEAIGVSAGRFPGALHAAEHAAIGMLGLVATCDRWDIGGLSTNLHPDTGLPT 702
Query: 938 RILLYDRHPGGTGVSKQ 954
+ +YD +PGG G + +
Sbjct: 703 -VFVYDGYPGGAGFADR 718
>gi|288921137|ref|ZP_06415425.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f]
gi|288347446|gb|EFC81735.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f]
Length = 720
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 251/728 (34%), Positives = 371/728 (50%), Gaps = 68/728 (9%)
Query: 218 GQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVAT 277
G + HVE + +R PD + L++ GI + ++HQA++ A+ G++VV+AT
Sbjct: 32 GNITHVEHVPSRPGRTGPWPDWADEVLVGRLRTAGIDEPWTHQAQTAQAAHEGRDVVLAT 91
Query: 278 MTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYD 337
T+SGKS+ Y LPVL L + + A+Y+ PTKALA DQLR++ ++ + YD
Sbjct: 92 GTASGKSVGYLLPVLSRLLAEPGARAVYLAPTKALAHDQLRSVRSLRLT---GVRASTYD 148
Query: 338 GDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFL 397
GDT +R W+R +A L++TNPDMLH ILP H ++S L LR
Sbjct: 149 GDTPGSEREWVRAHANLVLTNPDMLHRGILPAHRRWSSFLRGLR---------------- 192
Query: 398 FIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELA 457
FV+IDE H Y+G FG H AL+LRRL R+C+ YG+ P FV ++AT A+P L
Sbjct: 193 ---FVIIDECHGYRGVFGAHVALVLRRLRRVCAR-YGARPVFVLASATVADPGMSASRLT 248
Query: 458 NLSTLELIQNDGSPCAQKLFVLWNPTSCLRSV--------------------------LN 491
+ +E++ D SP F L+ P SV
Sbjct: 249 GVD-VEVVDTDSSPRGPVDFALYEPPLIRGSVQAGGVGSVGLAGAAGLAGAAGLAGAAGL 307
Query: 492 KSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEE 551
+ N A + +E + L A++V G+R + F RSR+ E+V + R LEE
Sbjct: 308 AGGAGLAGGENGAPVRRAATAESADLLADLVTEGVRTLVFVRSRRAAEVVAAAARRGLEE 367
Query: 552 TAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFP 611
AP L + YRAGY+AE+RR +E G+L GVAAT+ALELG+D+ +D T+ GFP
Sbjct: 368 AAPELSGRVAAYRAGYLAEERRDLESRLRTGELLGVAATSALELGVDISGLDATVIAGFP 427
Query: 612 GSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVL 671
G++ASLWQQAGR+GR + +LAV VA + PLD Y + +PE +F P+E D N VL
Sbjct: 428 GTLASLWQQAGRAGRAGQGALAVLVARDDPLDTYLVHHPEAVFGRPVEASVFDPDNPYVL 487
Query: 672 EQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKM 731
HL CAA E PL+ D FG G + L RG L P+ F H
Sbjct: 488 MPHLECAASELPLTE-EDLALFGPGARGAVDDLVRRGRLRRRPT-----GWFWTQRHRP- 540
Query: 732 PSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSS 791
+ IR ++++ + +L ++ + V++GAVY+HQG T+LV EL+L
Sbjct: 541 ---DVDIRGTGGPPVRIVEVGTGRLLGTVDAGTSHSTVHQGAVYLHQGATFLVTELDLDD 597
Query: 792 KIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFY 851
+A + A + T R++TDI V + + + + ++ T + VT GF
Sbjct: 598 AVAFVEAAQPDWTTVAREHTDIRVV--ESTRSARFADVEIHLGTVE-----VTNQVVGFQ 650
Query: 852 RLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVE-QNFSFRSGLHAASHALLHV 910
R +G I L LP ++AVW V + A + +HAA HA + +
Sbjct: 651 RRRLATGEILGQEPLDLPPRQLRTRAVWYTVTDELLAAANVEPAEVPGAVHAAEHAAIGL 710
Query: 911 VPIYVRCN 918
+P++ C+
Sbjct: 711 LPLFATCD 718
>gi|296421868|ref|XP_002840485.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636703|emb|CAZ84676.1| unnamed protein product [Tuber melanosporum]
Length = 1071
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 277/895 (30%), Positives = 444/895 (49%), Gaps = 91/895 (10%)
Query: 17 LKKIVEAFAFVSIFSAHLQLRREKVILSHVKGALNQLEKFGVRVGIEDIENLAVLCPKVV 76
L+K+ EA F A Q + +K A+ K + + +ED+ + L PK +
Sbjct: 45 LQKLHEALNLTYTFCA--QRKHVATTFDMLKSAVEGQTK--MELTVEDVAQMKFLAPKCL 100
Query: 77 QFANDDMESKNHDDSIVIINVSTEERDKVEDNLGSGQKAISLSKIFNAMKKRERSFKTNL 136
+F+ D E ++ ++V + +D ED + + L + + +R
Sbjct: 101 RFSYVDEE-------LLQLHVMGQAKDIYEDGKETLGMVLFLEFLDGEINQRSGKTPAVS 153
Query: 137 WEAVNLLMCKLQKRVMSLSVEDLLTYVKERRTDVRG-------NEVKRARRSQSSTSSSH 189
+AV L+ + +R ++ +V L E+ D G V R +S
Sbjct: 154 QKAVLALIKRRNERFVA-AVNKFLKGCAEKEVDAVGLLMDGCHEHVPRLPGHPQPSSQES 212
Query: 190 SFQRRCSD--KSQLLPLEMVEHL------RKGIGSQGQMVHVEDISARKAVLVEIPDALL 241
R SD K + E++E + R+ I G V I ++A ++ L
Sbjct: 213 LPTRGNSDIPKERKPIAEIIEEIKGLDLYREQIVPNGHRV----IPPQEAAFGDLKFLLS 268
Query: 242 DNTKSALKST-GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLS 300
+AL + +++LY+HQ E+I G +V+V+T TSSGKSL Y +P+L +
Sbjct: 269 QALVNALYTAHNVTRLYAHQVEAINNLCDGHSVIVSTSTSSGKSLIYQIPILHMMEQSAR 328
Query: 301 SSALYMFPTKALAQDQLRALLA----MTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLI 356
+ + +FPTKALAQDQ R+L+ MT + + YDGDT +DR +R AR++
Sbjct: 329 ARTMAIFPTKALAQDQKRSLVEVLGYMTDVL-GEVVVDTYDGDTELEDRDRVRQEARVIF 387
Query: 357 TNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGC 416
TNPDMLH SILP ++ L NL+ +V++DE H Y G+FG
Sbjct: 388 TNPDMLHCSILPNKDRWKEFLQNLK-------------------YVIVDELHVYSGSFGS 428
Query: 417 HTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKL 476
HTA I+RRL R+C+ + FV +AT ANP H + + +++L DGSP +K
Sbjct: 429 HTAFIMRRLRRVCASFGNTKVQFVSCSATVANPEAHMRTIFGVGSVKLTDVDGSPAGRKE 488
Query: 477 FVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRK 536
F+ WN + D N + P+ E + LF +++ G+R IAFCR+R
Sbjct: 489 FLCWN-------------SPYKDPENLSLGRVDPVMETARLFTQLILRGIRAIAFCRARN 535
Query: 537 LCELVLSYTR-EILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALEL 595
CEL++ R E P + + YR GY +DRRRIE++ F G L G+ AT+ALEL
Sbjct: 536 ACELLVKEVRSEFARLGRPEVAPRVMAYRGGYTPQDRRRIEKEMFEGHLLGIVATSALEL 595
Query: 596 GIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFK 655
G+D+G +D + +GFP SI+SL QQ+GR+GRR + SL++ VA P DQ+ M P+++F
Sbjct: 596 GVDIGSLDAVIMVGFPHSISSLRQQSGRAGRRNKDSLSILVAGSTPRDQFHMDNPDEIFT 655
Query: 656 SPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPS 715
P +D +N + E HL CAA E P++L+ D +YFG L G+ S +
Sbjct: 656 KPNAELQVDLENPVIREGHLQCAAYEVPINLLEDHQYFGPNLE---------GFAESKLA 706
Query: 716 LDSSAKIFEYIGHEKMPSHTISIRA---IESERYEVIDM--QSNEVLEEIEESKAFFQVY 770
++ + + PS +SIR +E+ VI+ +N+++E ++ A F +Y
Sbjct: 707 QKNAGSYHPHESYLPYPSKHVSIREGPDLETH-ISVINTTNHTNQIIETLDPDHAAFTLY 765
Query: 771 EGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQ 830
EG +++ QG TY+VK +NLSS+ A + + + T +DYTDI I +
Sbjct: 766 EGGIFLSQGKTYIVKNVNLSSRYAAVESLTVDWTTTPQDYTDIDPI---ETAVVHIIPES 822
Query: 831 LTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQS 885
L+K + + T +GF ++ R ++ D VE+ P + ++ +W+ VP S
Sbjct: 823 LSKAFYGTI--RIHTVIYGFLKIDRAKRVL-DAVEIDSPPITKLAKGMWLDVPVS 874
>gi|311068735|ref|YP_003973658.1| ATP-dependent helicase [Bacillus atrophaeus 1942]
gi|419820625|ref|ZP_14344234.1| putative ATP-dependent helicase [Bacillus atrophaeus C89]
gi|310869252|gb|ADP32727.1| putative ATP-dependent helicase [Bacillus atrophaeus 1942]
gi|388475099|gb|EIM11813.1| putative ATP-dependent helicase [Bacillus atrophaeus C89]
Length = 749
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 248/755 (32%), Positives = 399/755 (52%), Gaps = 66/755 (8%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E++ L+ GS+ +V+ +I RKA +PD++ K+AL GI +L++HQ +
Sbjct: 8 ELISELK---GSE-HVVNWHEIEPRKARTKPMPDSIDSRIKTALGKRGIDELFTHQFSAF 63
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
+ +++V T T+SGK+LCYNLPVL++++ + S+ ALY+FPTKALAQDQ L +
Sbjct: 64 QSVQKEESIVTVTPTASGKTLCYNLPVLQSIAENPSNRALYLFPTKALAQDQKSELNEII 123
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
+ I YDGDT+ R +R ++ITNPDMLH +ILP+H ++ + NL
Sbjct: 124 EEMGVDIKSFTYDGDTSPAIRQKVRKAGHIVITNPDMLHSAILPHHTKWVSLFENL---- 179
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
+++VIDE H Y+G FG H A ++RRL R+C YGS P F+ ++A
Sbjct: 180 ---------------KYIVIDELHTYRGVFGSHVANVIRRLKRIC-QFYGSSPIFICTSA 223
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T ANP+E +L S + LI ++G+P +K FV +NP ++NK
Sbjct: 224 TIANPKELAEQLTG-SPMRLIDDNGAPSGRKHFVFYNP-----PIVNK----------PL 267
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYR 564
N S EV+ L E +++ ++ I F RSR E++LS+ +E++++ SI YR
Sbjct: 268 NIRKSATIEVNELAKEFLKNKVQTIVFARSRVRVEIILSHIQELVKKEIG--TKSIRGYR 325
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
GY+ ++RR IER G++ GV +TNALELG+D+G + V + G+PGS+AS WQQAGR+
Sbjct: 326 GGYLPKERREIERGLRDGEILGVVSTNALELGVDIGQLQVCIMTGYPGSVASAWQQAGRA 385
Query: 625 GRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
GRR +L V VA P+DQY ++ P+ F E I+ +N +L HL CAA E P
Sbjct: 386 GRRHGEALIVMVANSTPIDQYIVRNPDYFFDRSPESARINPENLIILVDHLKCAAYELPF 445
Query: 685 SLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESE 744
DE++ ++ + L+ G L + S + + +E P+ IS+R+ E
Sbjct: 446 KA--DEEFGPLDVTDILEYLQEEGVLHHN-----SGRY--HWANESFPATNISLRSASQE 496
Query: 745 RYEVIDMQSN----EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKAD 800
++D QS+ ++ E++ A +++ A+Y+H+G Y V++L+ K A +K D
Sbjct: 497 NVVIVD-QSDVANVRIIGEMDRFSAMTLLHDEAIYLHEGIQYQVEKLDWDHKKAYVRKVD 555
Query: 801 LKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGII 860
++Y+T + V + K + T AL + GSG I
Sbjct: 556 VEYYTDANLAVQLKVLEIDKTIDRKQTSLHYGDVTVNALPTIFKKIKMTTFENI-GSGPI 614
Query: 861 FDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFS 920
YLP+ + A W+++ + + E+ + L ++ H+VP+YV C+ +
Sbjct: 615 ------YLPEEELHTSAAWMEIKEIDPHLGEK--TLEQLLLGIANVFQHIVPVYVMCDRN 666
Query: 921 DLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
D+ P I LYD +PGG G+++ V
Sbjct: 667 DIHVVSQIKAAHTGLP-TIFLYDHYPGGIGLAEDV 700
>gi|38232940|ref|NP_938707.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae NCTC 13129]
gi|38199198|emb|CAE48824.1| Putative ATP-dependent RNA helicase, DeaD/DeaH box family
[Corynebacterium diphtheriae]
Length = 778
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 249/738 (33%), Positives = 371/738 (50%), Gaps = 60/738 (8%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
H+E+I R A + P + L+ GI++LYSHQA++ + G NVVVAT TSS
Sbjct: 31 HIENIPPRSAHYLPWPAWTAPELQRELERRGIAQLYSHQAQAADLAWTGTNVVVATGTSS 90
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDA--SIDIGVYDGD 339
GKSL Y LP+L A+S D + ALY+ PTKAL DQL ++++ D + YDGD
Sbjct: 91 GKSLSYLLPILSAMSQDPQACALYLTPTKALGSDQLAHVMSLVGNVDTLTGVHPAPYDGD 150
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T R +R+ +R + +NPDMLH ILP H +++R F +
Sbjct: 151 TPTDARAGIREQSRFVFSNPDMLHTGILPNHQRWARF-------------------FRHL 191
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
RF+VIDE H+Y+G FG AL++RRL RL + YGS P+ + ++ATS +P H L
Sbjct: 192 RFIVIDECHSYRGVFGAGVALVIRRLLRLAAR-YGSTPTVMLASATSNDPAAHASTLIGQ 250
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
+ + + DG+P + +LW P D + N A + +E + + A
Sbjct: 251 PVVAVTE-DGAPTGARTVMLWEP----------GFVDGAEGENGAPIRRAASTESAGIMA 299
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LVDSICVYRAGYVAEDRRRIERD 578
++ G R + F RSR+ E+V E L H + YRAGY+AEDRR +ER
Sbjct: 300 TLIAAGARTLTFVRSRRQAEVVALRCAEELACHGRHDFASRVAAYRAGYLAEDRRALERK 359
Query: 579 FFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAF 638
G L GVA+TNALELGIDVG +D + G+PG++AS WQQAGR+GRR + SL VA
Sbjct: 360 LDDGTLLGVASTNALELGIDVGGLDAVVTAGYPGTVASFWQQAGRAGRRGQGSLVTLVAR 419
Query: 639 EGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLS 698
+ P+D Y + +PE L P+E D N +L HL CAA E PL+ + ++
Sbjct: 420 DDPMDTYLVHHPEALLGRPMEKIVFDPHNPHILSGHLYCAAAESPLTEAEIDALNAREVA 479
Query: 699 SGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHT-ISIRAIESERYEVIDMQSNEVL 757
L + GYL P+ F + P+H+ +S+R ++D +L
Sbjct: 480 Q---QLAHDGYLRHRPT-----GWFAVEQPGQPPAHSLVSLRG-SGHHVAIVDRSDGRLL 530
Query: 758 EEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSG 817
I+ ++A QV+ GAVY+HQG T++++EL+ +A+ + D + F R TDI + G
Sbjct: 531 GTIDSARAASQVHPGAVYLHQGETFVIEELDDQVALAVPDQPDYQTF--ARSTTDIRIVG 588
Query: 818 GNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQA 877
+ ++ L VT G Y + G + V L +P + ++A
Sbjct: 589 EVDKVCNPAPGLWVSN-----LVVEVTDRVVG-YTMKASDGSVLAMVPLQMPPQTLVTRA 642
Query: 878 VWIQVPQSVKAVVEQNFSFR---SGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRY 934
V +V +V + LHAA HA + ++P+ C+ D+ H
Sbjct: 643 ----VAYTVDPLVLDSLGITDVPGALHAAEHAAIGLLPLIATCDRWDIGGVSTAEHPDTG 698
Query: 935 FPERILLYDRHPGGTGVS 952
P + +YD HPGG G +
Sbjct: 699 LPT-VFVYDGHPGGAGFA 715
>gi|374709233|ref|ZP_09713667.1| DEAD/DEAH box helicase [Sporolactobacillus inulinus CASD]
Length = 760
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 249/768 (32%), Positives = 398/768 (51%), Gaps = 85/768 (11%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
+ +E L + + H + I R+A PD+L ++ K AL+ GI+ LY+HQAE+
Sbjct: 5 QTIEELLHRLKNDQNTAHWQTIPGREAHTAPFPDSLDEHLKDALRRRGINSLYTHQAEAY 64
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
+++ G ++V+ T T+SGK+LCYNLPVL+ + S ALY FPTKALAQDQ + +
Sbjct: 65 NSAMMGSDLVLVTPTASGKTLCYNLPVLQTMIAHPESRALYFFPTKALAQDQKNEMADLI 124
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
A I YDGDT R +R ++++TNPDMLH SILP+H ++ + NL
Sbjct: 125 DAVGLPIKSHTYDGDTAGSIRQKIRQAGQIVMTNPDMLHASILPHHTKWVSLFENL---- 180
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
RFVVIDE H Y+G FG H A ++RRL R+C + YGS+P F+ ++A
Sbjct: 181 ---------------RFVVIDELHTYRGVFGSHVANVIRRLKRICRY-YGSNPQFICTSA 224
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T ANPREH L LI +G+P +K F+++NP V NK +D ++
Sbjct: 225 TIANPREHAEALTGRKMF-LIDRNGAPSVKKHFLIYNP-----PVTNKQLNVREDETHS- 277
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREI---LEETAPHLVDSIC 561
V L + +++ ++ I F +SR EL++S+ ++I ++ AP I
Sbjct: 278 ---------VVRLAGDFLKNKIQTIVFAKSRLKVELLVSHLQKINSGRQDRAP-----IR 323
Query: 562 VYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQA 621
YR GY+ +RR IE+ G++ GV TNALELG+D+G + V + G+PG++AS+WQQA
Sbjct: 324 AYRGGYLPLERRAIEKGLRQGEIMGVVTTNALELGVDIGQLQVCILTGYPGNMASVWQQA 383
Query: 622 GRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALE 681
GR+GRR ++ + V PLDQY + + F E I+ N +L +H+ CAA E
Sbjct: 384 GRAGRRSEDAVIIMVTSSNPLDQYMANHTDYFFSRKPESVRINPDNIMILMEHIKCAAYE 443
Query: 682 HPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAI 741
P + FGS + YL+ + L + ++ + P++ +++R+
Sbjct: 444 LPFK---KGERFGSEHVDELCD-----YLTDEDLLHYQRGKWYWMS-DGFPANNVNLRSA 494
Query: 742 ESERYEVIDMQSN---EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQK 798
+ + +ID+ +V+ E + A +YE A+Y+HQG Y V +L+L + A +K
Sbjct: 495 AQDSFAIIDITDQGHAKVIGEEDRFGAMTMLYEDAIYIHQGAQYHVDDLDLIERKAYVRK 554
Query: 799 ADLKYFTKTRDYTDIHV------SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYR 852
++ Y+T + + V + +NA+ K D + +AL F Y
Sbjct: 555 VNVNYYTDSDLAVQLDVLAMDKHAVFDNAHIEKGYGD----VSVRALPTIFKKIRFETYE 610
Query: 853 LWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFS---FRSGLHAASHALLH 909
G G +++LP+ + A WI S + F F+ L SH L H
Sbjct: 611 NI-GWG------KIHLPELEMHTNAAWI----SFDPIYLDQFGKNVFQGALVGLSHLLRH 659
Query: 910 VVPIYVRCNFSDLA--PECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
P++V C+ +DL+ P+ PH+ + + +YD++PGG G+S+ +
Sbjct: 660 AAPLFVLCDQNDLSVVPKIKAPHNEK---PSVFIYDKYPGGVGLSENL 704
>gi|260579395|ref|ZP_05847277.1| DEAD/DEAH box family ATP-dependent RNA helicase [Corynebacterium
jeikeium ATCC 43734]
gi|258602524|gb|EEW15819.1| DEAD/DEAH box family ATP-dependent RNA helicase [Corynebacterium
jeikeium ATCC 43734]
Length = 784
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 265/742 (35%), Positives = 387/742 (52%), Gaps = 59/742 (7%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+ H I AR + + PD + L GIS +SHQ E+ + AG++VVVAT T
Sbjct: 37 VTHTHTIPARPSQTAQWPDWADETLVEYLHEQGISTPWSHQVETANHAHAGRDVVVATGT 96
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASID---IGVY 336
+SGKSL Y L L L+ +S+ALY+ PTKALAQDQ RA LA A A+++ + Y
Sbjct: 97 ASGKSLGYQLAALSDLAAASTSTALYIAPTKALAQDQ-RAALARMCAGAANLNDIMVATY 155
Query: 337 DGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIF 396
DGDT + R +RD AR+++TNPDMLH SIL +SR+L LR
Sbjct: 156 DGDTPPETRRVIRDQARVIVTNPDMLHASILGNPQSWSRLLRTLR--------------- 200
Query: 397 LFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMEL 456
+VVIDE H Y+G FG H A++LRRL RLC G+ P+ V ++ATS +P H L
Sbjct: 201 ----YVVIDECHVYRGVFGAHVAMVLRRLLRLC----GTAPTIVLASATSVDPAAHARRL 252
Query: 457 ANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSY 516
S + + DG+P ++ LW P L + ++ + R AAN SE +
Sbjct: 253 TGRSDVVAVTQDGAPAGERTVALWEP-GFLPDMEGENGAPV---RRAAN------SEAAD 302
Query: 517 LFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICV--YRAGYVAEDRRR 574
+ + G R + F RSR+ E+V E L D++ V YRAGY EDRR
Sbjct: 303 VMGLAIAQGARTLTFVRSRRGAEVVSVAAAEKLSAMG-RSADAVRVAAYRAGYTPEDRRE 361
Query: 575 IERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAV 634
+ER F G+L G+A+TNALELGIDVG +DV + GFPG+IAS QQAGR+GRR + +L V
Sbjct: 362 LERRFDNGELLGIASTNALELGIDVGGLDVVVTSGFPGTIASFRQQAGRAGRRGQGALVV 421
Query: 635 YVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFG 694
V + P+D Y + +PE L P+E D N VL H+VCAA E PLS + +
Sbjct: 422 LVGADDPMDTYLLHHPEALLDRPVENTVFDPTNPYVLADHVVCAAAEKPLS---ETEITH 478
Query: 695 SGLSSGITTLKNRGYLSSDP-SLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQS 753
G + L +G L P + + K+ E + H + +SIR + + +++ S
Sbjct: 479 WGAERVVEHLLRQGALKRRPRGIFADLKVAEQV-HSQ-----VSIRGGAAAQVAIVEADS 532
Query: 754 NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDI 813
+L +++S+A V+ GAVYMHQG T++V+ L+L +A + +Y T+ TDI
Sbjct: 533 GRLLGTVDQSRATSDVHTGAVYMHQGETFVVQLLDLEESVAWVRPEFPEYTTQVIRDTDI 592
Query: 814 HVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSY 873
V T+ ++ + V+ T G+ + G G I +TV L +P S
Sbjct: 593 AVR------RTRGTRKVCDGVWLADVDVEVSHTVSGYRKRLPG-GEILETVPLDVPPESL 645
Query: 874 ESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDS 932
++AV V P + + ++ LHAA HA + ++P+ C+ D+ H
Sbjct: 646 RTRAVAYTVDPDVLLDLGLPEPTWPGTLHAAEHAAIGLLPLIATCDRWDIGGVSTALHAD 705
Query: 933 RYFPERILLYDRHPGGTGVSKQ 954
P + +YD + GG G ++Q
Sbjct: 706 TGLPT-VFVYDGYAGGAGFAEQ 726
>gi|339008832|ref|ZP_08641405.1| putative helicase [Brevibacillus laterosporus LMG 15441]
gi|338774632|gb|EGP34162.1| putative helicase [Brevibacillus laterosporus LMG 15441]
Length = 760
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 251/757 (33%), Positives = 393/757 (51%), Gaps = 65/757 (8%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E++E R + +V+ I R +V P+ + + AL GIS LY+HQA +
Sbjct: 9 ELLEEFRSDERMKQNIVNWTTIPPRDPQVVPFPEQIDERIAQALSRRGISSLYTHQATAF 68
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
GK++V T T+SGKSLCY+LP+L+ L++D + ALYMFPTKALAQDQ L +
Sbjct: 69 RHIQDGKHIVAVTPTASGKSLCYHLPILQTLANDAQARALYMFPTKALAQDQKSELHELI 128
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
SI YDGDT R +R ++ITNPDMLH +ILP+H ++ +A
Sbjct: 129 NDMGLSIKSETYDGDTPAAIRQMVRKAGNIVITNPDMLHSAILPHHTKW---------VA 179
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
F F +++VVIDE H Y+G FG H A ++RRL R+C++ YGS P F+ ++A
Sbjct: 180 F----------FEHLKYVVIDELHTYRGVFGSHVANVIRRLKRICAY-YGSYPQFICTSA 228
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T ANP + ++ +EL+ N+G+P K F+ +NP + LN ++ + R+ A
Sbjct: 229 TIANPVQLAEQITE-EQMELVDNNGAPAGTKHFIFYNP-PIVNHQLNIRRSATLEARDIA 286
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYR 564
+ + +G++ I F RSR E++L+Y +E++ + +I YR
Sbjct: 287 ST--------------FLTNGVQTILFARSRVRVEILLTYLQELIRKKLGS--KTIQGYR 330
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
GY+ RR+IER G + GV +TNALELG+D+G + + G+PGS+AS WQQAGR+
Sbjct: 331 GGYLPTQRRQIERGLRQGDIVGVVSTNALELGVDIGQLQACVITGYPGSVASTWQQAGRA 390
Query: 625 GRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
GRR+ S+ V V PLDQY + +PE F+ E I+ N +L H+ CAA E P
Sbjct: 391 GRRQDESVVVMVGSSSPLDQYIILHPEYFFERNPESARINPDNLIILVDHMKCAAYELP- 449
Query: 685 SLIYDEKYFGSGLSSGITTLKN-RGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIES 743
F +G + G + +L+ + L S + ++ ++ P+H IS+R+
Sbjct: 450 --------FTTGDTFGRAEIAEILEFLTEEQVLHFSKGKWFWM-NDSFPAHNISLRSASQ 500
Query: 744 ERYEVIDMQ---SNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKAD 800
E ++D+ +V+ E++ + ++E A+Y+HQG Y V++L+ K A ++
Sbjct: 501 ENVVIVDITERGQEKVIGEMDRFSSMTLLHEEAIYLHQGVQYQVEKLDYEEKKAYIREVK 560
Query: 801 LKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGII 860
+ Y+T + V + A ++ + A+A F + GSG I
Sbjct: 561 VDYYTDANVAVQLKVLESDFARKQNETELAYGEVAVNAMATIFKKIKFETHENI-GSGPI 619
Query: 861 FDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFS 920
+LP+ + A WI P+S+ + Q GL A H L HV P++V C+
Sbjct: 620 ------HLPEEELHTNAAWISFPESILQTIGQE-EVELGLVGAGHVLQHVAPLWVMCDPK 672
Query: 921 DL--APECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
DL + H ++ I YDR+PGG G+S+QV
Sbjct: 673 DLHVISQRKAVHSNQ---PTIFFYDRYPGGIGLSEQV 706
>gi|409046158|gb|EKM55638.1| hypothetical protein PHACADRAFT_256401 [Phanerochaete carnosa
HHB-10118-sp]
Length = 866
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 245/721 (33%), Positives = 379/721 (52%), Gaps = 68/721 (9%)
Query: 179 RRSQSSTSSSHSFQRRCSDKSQLLPLEMV-EHLRKGIGSQGQMVHVEDISARKAVLVEIP 237
R + +S SSS R + + +E V E +RK GQ+ + + A+ +
Sbjct: 33 RTTLASISSSQG-PRAVPEPAHRPTIESVLEEVRKQEWYAGQIAYDRTVDAKSGRTATLD 91
Query: 238 DALLDNTKSALK-STGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALS 296
+ L + L+ + IS Y HQ +I A GK+V+V+T T+SGKS+ Y +P L L
Sbjct: 92 EPLSEPLSWGLRDARKISSFYIHQVAAINALDQGKHVIVSTSTASGKSVIYQVPFLRFLE 151
Query: 297 HDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGV--YDGDTTQKDRMWLRDNARL 354
D S+A++++PTKALAQDQ +AL + + DI V YDGDT Q++R +R+ A +
Sbjct: 152 QDPQSTAIFIYPTKALAQDQKQALERLLASCSGMEDIKVATYDGDTPQEERRAIRETASV 211
Query: 355 LITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAF 414
+ TN DM+H S+LP+ + R L +L+L+A +DE H Y G F
Sbjct: 212 VFTNFDMMHFSVLPHEELWRRFLKHLKLVA-------------------VDELHYYNGTF 252
Query: 415 GCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQ 474
G H A +LRR R+C+ V FV +AT NP + ++ + +E I DG+P Q
Sbjct: 253 GSHVAQVLRRFRRICAAVGNRHARFVSCSATITNPGRYMCQMFGVDNVEEITEDGAPSGQ 312
Query: 475 KLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRS 534
K +++W+P + D A S + E L +++ G+R I FC
Sbjct: 313 KDYLVWDPP-------------LIDPMIPALGRHSALQEAIRLARFLMERGVRLIVFCTI 359
Query: 535 RKLCELVLSYTR-EILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNAL 593
RK CE+ R E+ ++ + YR GY A DRRRIE++ F G L G+ ATNAL
Sbjct: 360 RKSCEMFFKALRAELTAHGRFDILKRVMAYRGGYTASDRRRIEQEAFEGNLLGIVATNAL 419
Query: 594 ELGIDVGHIDVTLHLGFP-GSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEK 652
ELG+D+G +D + GFP G +AS QQAGR+GRR R +LA+++A + P+D++++ +PE+
Sbjct: 420 ELGVDIGVLDAVMMFGFPRGGLASFRQQAGRAGRRARDALAIFIASDYPIDRHYVAHPEE 479
Query: 653 LFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFG---SGLSSGITTLKNRGY 709
LF PI ID +N LE HL CA E PLS D KYFG + G+
Sbjct: 480 LFDKPISELVIDVENEVFLEAHLQCAGQEMPLSE-EDGKYFGPLMKQICESRLVKDEEGW 538
Query: 710 LSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQ------SNEVLEEIEES 763
+ P P+ IS+R + Y VID+ + +LE +E S
Sbjct: 539 YHTHPKF------------LPQPAKHISLRGGNEDEYSVIDVTKVAQGGTARILETMETS 586
Query: 764 KAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYA 823
+A F++YEGAV++HQG T++++E++ SK+A ++D+ + T+ RD+T+I + A
Sbjct: 587 RALFELYEGAVFIHQGLTFIIQEVSHDSKMAKLIRSDVNWTTEPRDFTNI-----DAAQT 641
Query: 824 TKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVP 883
+I + + + A + T FG++++ + I D V++ P Y ES VWI VP
Sbjct: 642 HRIREIRGSPYRAYYGRIDLFTLVFGYFKIRNKT--IIDAVDVETPPYERESTGVWIDVP 699
Query: 884 Q 884
+
Sbjct: 700 K 700
>gi|315446277|ref|YP_004079156.1| helicase family protein with metal-binding cysteine cluster
[Mycobacterium gilvum Spyr1]
gi|315264580|gb|ADU01322.1| helicase family protein with metal-binding cysteine cluster
[Mycobacterium gilvum Spyr1]
Length = 781
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 254/747 (34%), Positives = 377/747 (50%), Gaps = 70/747 (9%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
HV D+ R+A P + A GI L+SHQ + + G++VV++T T+S
Sbjct: 29 HVADLPPRRATSHPWPPWADPDVVQAFHDQGIRSLWSHQLAAADLAHDGRHVVLSTGTAS 88
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGV--YDGD 339
GKSL Y LP+ L + S LY+ PTKAL DQLRA A+T + D+ YDGD
Sbjct: 89 GKSLAYQLPIATELKRNPRSRVLYLSPTKALGHDQLRAAAALTASVPGLDDVAPTPYDGD 148
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
+ + R + R+ +R + +NPDM+H+S+L H +++ L NLR
Sbjct: 149 SPSEVRRFARERSRWIFSNPDMIHLSLLRNHARWAVFLRNLR------------------ 190
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYG----SDPSFVFSTATSANPREHCME 455
FVV+DE H Y+G FG + A++LRRL RLC+ S P+ VF++AT+A P E
Sbjct: 191 -FVVVDECHYYRGIFGSNVAMVLRRLLRLCARYAPAGDVSGPTVVFASATTAQPAVTASE 249
Query: 456 LANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVS 515
L + E+ + DGSP + LW P + + +L + N A S +E +
Sbjct: 250 LIGQTVAEVTE-DGSPQGTRTIALWEP-ALIPDLLGE---------NGAPVRRSAGAEAA 298
Query: 516 YLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRI 575
+ A+++ G R + F RSR+ EL R L +TAP L D + YRAGY+AEDRRR+
Sbjct: 299 RVMADLIAEGARTLTFVRSRRGAELAALGARTRLADTAPDLADQVASYRAGYLAEDRRRL 358
Query: 576 ERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVY 635
ER G+L G+A TNALELG+D+ +D + GFPG++AS WQQAGR+GRR + +L V
Sbjct: 359 ERALADGELRGMATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRAGRRGQGALVVL 418
Query: 636 VAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLS----LIYDEK 691
+A + PLD Y + +P L PIE ID N VL L+CAA E PL+ ++D +
Sbjct: 419 IARDDPLDTYLVHHPAALLDKPIERVVIDPANPYVLGPQLLCAATELPLTEAEVRMWDAE 478
Query: 692 YFGSGL-SSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVID 750
+GL G+ + G+ + P LD P + IR + +++
Sbjct: 479 SVAAGLVDDGLLRRRPSGFFPA-PGLD--------------PHPAVDIRGSTGGQIAILE 523
Query: 751 MQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDY 810
+ +L +A V+ GAVY+HQG +Y+V L+ IA D Y T R+
Sbjct: 524 DGTGRMLGSTGAGQAPASVHPGAVYLHQGESYVVDSLDFEDGIAFVHAEDPGYTTFAREV 583
Query: 811 TDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPK 870
TDI V+G + T + +VT T G+ R R G + D VEL +P
Sbjct: 584 TDISVTGAGE-------RSGHGPVTVGLVPVSVTNTVTGYLRR-RLDGEVIDFVELDMPT 635
Query: 871 YSYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLA--PECP 927
+ + A + P++++ V LHAA HA + ++P+ C+ D+
Sbjct: 636 RTLNTMAAMCTITPEALQDVGIDPLRIPGALHAAEHAAIGLLPLMASCDRGDIGGVSTAV 695
Query: 928 NPHDSRYFPERILLYDRHPGGTGVSKQ 954
P D P I +YD +PGG G + +
Sbjct: 696 GPVDG--LPT-IFVYDGYPGGAGFAAR 719
>gi|400535217|ref|ZP_10798754.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium colombiense CECT 3035]
gi|400331575|gb|EJO89071.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium colombiense CECT 3035]
Length = 783
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 251/747 (33%), Positives = 373/747 (49%), Gaps = 70/747 (9%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
HV ++ R + P + SA GI +SHQ+ + + AG++VV++T T+S
Sbjct: 25 HVAELPPRSGRPHDWPAWAEPDVVSAFADRGIKSPWSHQSAAADLAYAGRHVVLSTGTAS 84
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIG--VYDGD 339
GKSL Y LPVL L+ D + LY+ PTKAL DQLRA A+T A D+ YDGD
Sbjct: 85 GKSLAYQLPVLNTLATDPRARVLYLSPTKALGHDQLRAAHALTAAIPTCHDVAPTAYDGD 144
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
+ + R + R+ +R + +NPDM+H+SIL H +++ +L +LR
Sbjct: 145 SPTEVRRFARERSRWVFSNPDMIHLSILRNHARWTVLLRSLR------------------ 186
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGS---DPSFVFSTATSANPREHCMEL 456
FV++DE H Y+G FG + A++LRRL RLC+ P+F+F++AT+ +P EL
Sbjct: 187 -FVIVDECHYYRGVFGSNVAMVLRRLSRLCARYSARPDCQPTFIFASATTDSPGATATEL 245
Query: 457 ANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSY 516
E + DGSP + LW P LRS L N A S +E +
Sbjct: 246 LGQPVAE-VTEDGSPQGARTVALWEP--ALRSDLTGE--------NGAPVRRSAGAEAAR 294
Query: 517 LFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIE 576
+ A+++ G + + F RSR+ EL + L++ AP L + YRAGY+AEDR +E
Sbjct: 295 VMADLIAEGAQTLTFVRSRRAAELTALGAQARLDDIAPELSGQVASYRAGYLAEDRTALE 354
Query: 577 RDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYV 636
R G+L G+A TNALELG+D+ +D + GFPG++AS WQQAGRSGRR + +L V V
Sbjct: 355 RALAEGRLRGLATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLV 414
Query: 637 AFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSG 696
A + PLD Y + P L P+E ID N +L L+CAA E PL +
Sbjct: 415 ARDDPLDTYLVHNPAALLDKPVERVVIDPANPYILGPQLLCAATELPLDDAEVRALEATE 474
Query: 697 LSSGITT---LKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQS 753
++ G+ L+ RG K F G E P + IR + +++ +
Sbjct: 475 VADGLVDDGLLRRRG-----------GKYFPVPGLE--PHAAVDIRGSAGGQIVIVEADT 521
Query: 754 NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDI 813
+L +A V+ GAVY+HQG +Y+V L+ IA D Y T R+ TDI
Sbjct: 522 GRLLGSAGAGQAPATVHPGAVYLHQGDSYVVDSLDTEEGIAFVHAEDPGYATFAREVTDI 581
Query: 814 HVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSY 873
V+G A T + TVT G+ R R SG + D +EL +P+++
Sbjct: 582 AVTGTGERLA-------FGPVTLGLVPVTVTHQVVGYLRR-RLSGEVIDFIELEMPEHTL 633
Query: 874 ESQAVWIQVPQSV--KAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLA----PECP 927
+ AV + + + VE LHAA HA + ++P+ C+ D+ P
Sbjct: 634 ATTAVMYTITEDALQRKGVEAT-RIPGALHAAEHAAIGLLPLVASCDRGDIGGLSTAVGP 692
Query: 928 NPHDSRYFPERILLYDRHPGGTGVSKQ 954
+P P + +YD +PGG G +++
Sbjct: 693 DPLG---LPS-VFVYDGYPGGAGFAER 715
>gi|291452934|ref|ZP_06592324.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
gi|291355883|gb|EFE82785.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
Length = 813
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 252/751 (33%), Positives = 379/751 (50%), Gaps = 67/751 (8%)
Query: 217 QGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVA 276
+ ++ H E + R A PD + +A++ GI ++HQA +L G++V+VA
Sbjct: 56 ESRITHTEHLPPRAARHAVWPDRIRPEVIAAVQKAGIPDPWAHQAAVAEHALDGQSVIVA 115
Query: 277 TMTSSGKSLCYNLPVLEAL------SHDLSSSALYMFPTKALAQDQLRALLAMTKAFDAS 330
T T+SGKSL Y +PVL +L + ++ALY+ PTKALA DQLRA+ ++ +
Sbjct: 116 TGTASGKSLAYLVPVLSSLLDGAEAPNGRGATALYLSPTKALAADQLRAVKELSAPLGNA 175
Query: 331 IDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTT 390
+ VYDGDT ++R W+R A L++TNPDMLH ILP H ++S L LR
Sbjct: 176 VRPAVYDGDTPVEEREWIRQYANLVLTNPDMLHRGILPSHPRWSSFLRALR--------- 226
Query: 391 EVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPR 450
+VVIDE+H Y+G FG H A ++RRL RLC+ YG+DP F+ ++AT+A P
Sbjct: 227 ----------YVVIDESHTYRGVFGSHVAQVIRRLRRLCAR-YGADPVFLLASATAAEPA 275
Query: 451 EHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSP 510
L L + + +D SP + +F LW P L + + N A +
Sbjct: 276 VAAGRLTGLP-VSAVDDDASPRGELVFALWEPP------LTEHHGE-----NGAPVRRTA 323
Query: 511 ISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAE 570
+E + L ++ +R +AF SR+ EL+ T+E L E L + YR GY+ E
Sbjct: 324 TAETAGLLTDLAVQSVRTVAFVGSRRGAELISVITQERLAEVDRSLARRVAAYRGGYLPE 383
Query: 571 DRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERP 630
+RR +ER G L G+AAT ALELG+DV +D L G+PG+ ASLWQQAGR+GR +
Sbjct: 384 ERRALERALHSGDLLGLAATTALELGVDVSGLDAVLICGYPGTRASLWQQAGRAGRSGQG 443
Query: 631 SLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDE 690
+LAV VA + PLD Y + +PE +F P+E +D N VL HL AA E PL+ D
Sbjct: 444 ALAVMVARDDPLDTYLVHHPEAIFDQPVESTVLDPDNPYVLAPHLCAAAAELPLTE-EDL 502
Query: 691 KYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGH------EKMPSHTISIRAIESE 744
FG + L+ +AK+ H + + IR
Sbjct: 503 ALFGPATRELLPQLE-------------AAKLLRRRAHGWHWTRRESAADLADIRGGGGR 549
Query: 745 RYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYF 804
+++++ + +L ++ + A V+ GAV++HQG TYLV++L+L +AL ++A Y
Sbjct: 550 PVQIVEVGTGRLLGTVDANAAHGSVHTGAVHLHQGRTYLVRDLDLEDSVALVEQATPSYS 609
Query: 805 TKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTV 864
T RD T I V +L + + VT F R +G +
Sbjct: 610 TTARDTTAISVL--ETDAEIPWGDGRLCYGSVE-----VTNQVVSFLRRRLITGEVLGET 662
Query: 865 ELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSG-LHAASHALLHVVPIYVRCNFSDLA 923
+L LP + ++AVW V + N G LHAA HA + ++P++ C+ D+
Sbjct: 663 KLDLPPRTLRTRAVWWTVTEDQLDAARINPEQLGGALHAAEHASIGMLPLFATCDRRDIG 722
Query: 924 PECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
H P + +YD HPGG G +++
Sbjct: 723 GVSIPLHPDTLLPT-VFVYDGHPGGAGFAER 752
>gi|421744997|ref|ZP_16182879.1| helicase/secretion neighborhood putative DEAH-box helicase
[Streptomyces sp. SM8]
gi|406686593|gb|EKC90732.1| helicase/secretion neighborhood putative DEAH-box helicase
[Streptomyces sp. SM8]
Length = 786
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 252/751 (33%), Positives = 382/751 (50%), Gaps = 67/751 (8%)
Query: 217 QGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVA 276
+ ++ H E + R A PD + +A++ GI ++HQA +L G++V+VA
Sbjct: 29 ESRITHTEHLPPRAARHAVWPDRIRPEVIAAVQKAGIPDPWAHQAAVAEHALDGQSVIVA 88
Query: 277 TMTSSGKSLCYNLPVLEAL------SHDLSSSALYMFPTKALAQDQLRALLAMTKAFDAS 330
T T+SGKSL Y +PVL +L + ++ALY+ PTKALA DQLRA+ ++ +
Sbjct: 89 TGTASGKSLAYLVPVLSSLLDGAEAPNGRGATALYLSPTKALAADQLRAVKELSAPLGNA 148
Query: 331 IDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTT 390
+ VYDGDT ++R W+R A L++TNPDMLH ILP H ++S L LR
Sbjct: 149 VRPAVYDGDTPVEEREWIRQYANLVLTNPDMLHRGILPSHPRWSSFLRALR--------- 199
Query: 391 EVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPR 450
+VVIDE+H Y+G FG H A ++RRL RLC+ YG+DP F+ ++AT+A P
Sbjct: 200 ----------YVVIDESHTYRGVFGSHVAQVIRRLRRLCAR-YGADPVFLLASATAAEPA 248
Query: 451 EHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSP 510
L L + + +D SP + +F LW P L + + N A +
Sbjct: 249 VAAGRLTGLP-VSAVDDDASPRGELVFALWEPP------LTEHHGE-----NGAPVRRTA 296
Query: 511 ISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAE 570
+E + L ++ +R +AF SR+ EL+ T+E L E L + YR GY+ E
Sbjct: 297 TAETAGLLTDLAVQSVRTVAFVGSRRGAELISVITQERLAEVDRSLARRVAAYRGGYLPE 356
Query: 571 DRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERP 630
+RR +ER G L G+AAT ALELG+DV +D L G+PG+ ASLWQQAGR+GR +
Sbjct: 357 ERRALERALHSGDLLGLAATTALELGVDVSGLDAVLICGYPGTRASLWQQAGRAGRSGQG 416
Query: 631 SLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDE 690
+LAV VA + PLD Y + +PE +F P+E +D N VL HL AA E PL+ D
Sbjct: 417 ALAVMVARDDPLDTYLVHHPEAIFDQPVESTVLDPDNPYVLAPHLCAAAAELPLTE-EDL 475
Query: 691 KYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGH-----EKMPSHTIS-IRAIESE 744
FG + L+ +AK+ H + P+ ++ IR
Sbjct: 476 ALFGPATRELLPQLE-------------AAKLLRRRAHGWHWTRREPAADLADIRGGGGR 522
Query: 745 RYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYF 804
+++++ + +L ++ + A V+ GAV++HQG TYLV++L+L +AL ++A Y
Sbjct: 523 PVQIVEVGTGRLLGTVDANAAHGSVHTGAVHLHQGRTYLVRDLDLEDSVALVEQATPSYS 582
Query: 805 TKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTV 864
T RD T I V +L + + VT + R +G +
Sbjct: 583 TTARDTTAISVL--ETDAEIPWGDGRLCYGSVE-----VTNQVVSYLRRRLITGEVLGET 635
Query: 865 ELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSG-LHAASHALLHVVPIYVRCNFSDLA 923
+L LP + ++AVW V + N G LHAA HA + ++P++ C+ D+
Sbjct: 636 KLDLPPRTLRTRAVWWTVTEDQLDAARINPEQLGGALHAAEHASIGMLPLFATCDRRDIG 695
Query: 924 PECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
H P + +YD HPGG G +++
Sbjct: 696 GVSIPLHPDTLLPT-VFVYDGHPGGAGFAER 725
>gi|260905514|ref|ZP_05913836.1| ATP-dependent RNA helicase [Brevibacterium linens BL2]
Length = 758
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 253/753 (33%), Positives = 388/753 (51%), Gaps = 72/753 (9%)
Query: 213 GIGSQGQ-MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGK 271
G G++ + +VHV DI R PD + + K A + G+ +L+ HQ E+ A+ G
Sbjct: 12 GFGARDERIVHVRDIPQRFEHESAWPDWIDEELKHACHAIGVDQLWDHQLEAAQAAREGS 71
Query: 272 NVVVATMTSSGKSLCYNLPVLEALSHDL----SSSALYMFPTKALAQDQLRALLAMTKAF 327
+VV+AT T+SGKSL + LPVLE++ +SSA+Y+ PTKALA DQL L K
Sbjct: 72 DVVIATPTASGKSLGFWLPVLESIQATRAKLRTSSAIYIAPTKALAADQLANL---EKLI 128
Query: 328 DASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSL 387
+ YDGDT+Q+ + W R +A ++ TNPDMLH ILP H +FSR+ +LR
Sbjct: 129 VQGMRPATYDGDTSQESKDWARRHANIIFTNPDMLHRGILPQHERFSRLFKSLR------ 182
Query: 388 VTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSA 447
++VIDEAH Y+G FG H ALILRRL R+ +H YG+ P + ++AT A
Sbjct: 183 -------------YIVIDEAHRYRGVFGSHVALILRRLLRIAAH-YGAHPVVIGASATMA 228
Query: 448 NPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKT 507
NP + +L S + + D SP A F LW P + +
Sbjct: 229 NPDQAFSKLTGRS-VHAVSQDSSPRASGSFALWEPPV-----------------SPGGER 270
Query: 508 SSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGY 567
S + E + + + + G R IAF SR+ E + S R+ + + L D + YR GY
Sbjct: 271 RSGLVEAADILTDAMCAGYRSIAFIASRRGTEALASTVRDQVGQVDDSLKDKVAAYRGGY 330
Query: 568 VAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRR 627
+AE+RR +E G+L VA+TNALELGID+ +D+ + G+PG++ASLWQQAGR+GR
Sbjct: 331 LAEERRLLESALRSGRLLAVASTNALELGIDISGLDLVIISGWPGTLASLWQQAGRAGRA 390
Query: 628 ERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLI 687
+ +AV++A + PLD Y + +PE +F +P++ I N VL HL AA E PL
Sbjct: 391 GQRWMAVFIARDDPLDTYVVNHPEVIFDAPVDAGVIHPGNPHVLSGHLCAAAAEVPLQQ- 449
Query: 688 YDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYE 747
D +F + + L R L + P+ AK + + IR ++
Sbjct: 450 SDLVHFPENSTEVLADLVERKLLRARPTGWFWAK-------DSSAADMSDIRGSGGGQFR 502
Query: 748 VIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKT 807
+++ + +L ++ES AF + GAVY HQG + V EL+L +AL ++ D+ Y T+
Sbjct: 503 LVEASTGALLGTVDESGAFTGAHPGAVYTHQGADFTVLELDLEDHVALVERTDVDYTTQA 562
Query: 808 RDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGF---YRLW--RGSGIIFD 862
R T+I + + DQ ++ C+ T YR+ RG II +
Sbjct: 563 RSQTEIDI----------VDTDQQRTLSSGVTVCSGTVDVKDHVIAYRMRAKRGGAIIAE 612
Query: 863 TVELYLPKYSYESQAVWIQVPQSVKAVVE-QNFSFRSGLHAASHALLHVVPIYVRCNFSD 921
EL LP+ + +++AVW +PQ++ E + +HAA HA + ++P++ C+ D
Sbjct: 613 H-ELDLPERTLQTKAVWWTIPQTLLDEAEIIHADLPGAVHAAEHASIGLLPLFAGCDRWD 671
Query: 922 LAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
+ H + +YD GG G +++
Sbjct: 672 IGGVSTALHADTGMAT-VFVYDGLAGGAGFAER 703
>gi|226314636|ref|YP_002774532.1| helicase [Brevibacillus brevis NBRC 100599]
gi|226097586|dbj|BAH46028.1| putative helicase [Brevibacillus brevis NBRC 100599]
Length = 760
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 255/775 (32%), Positives = 394/775 (50%), Gaps = 103/775 (13%)
Query: 206 MVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIM 265
+++H++ + + H I AR+A V P L + AL + GI LY+HQ S
Sbjct: 10 ILDHIKTDERFRDNIAHWRVIPAREAKSVPFPSELDGRIRDALTNRGIPSLYTHQETSFR 69
Query: 266 ASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTK 325
GK++V T T+SGKS+CY+LP+L+ LS D + ALY+FPTKALAQDQ L +
Sbjct: 70 HVREGKHIVAVTPTASGKSMCYHLPILQTLSEDTQARALYLFPTKALAQDQKSELHELIT 129
Query: 326 AFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAF 385
SI YDGDT R +R ++ITNPDMLH +ILP+H ++ ++F
Sbjct: 130 EMGLSIKSETYDGDTPANIRQMVRKAGNIVITNPDMLHSAILPHHTKW---------VSF 180
Query: 386 SLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTAT 445
F ++++VIDE H Y+G FG H A ++RRL R+C+ YGS P F+ ++AT
Sbjct: 181 ----------FEHLKYIVIDELHTYRGVFGSHVANVIRRLKRICA-FYGSHPQFICTSAT 229
Query: 446 SANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAAN 505
ANP++ L +EL+ N+G+P K F+ +NP V+NK + R +A
Sbjct: 230 IANPKQLAEALTE-EEVELVNNNGAPSGIKHFLFYNP-----PVVNKQL----NIRRSAT 279
Query: 506 KTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREIL-EETAPHLVDSICVYR 564
+ I+E + + +G++ I F RSR E++L+Y +E++ + P + YR
Sbjct: 280 LEARDITE------QFLTNGIQTILFARSRVRVEILLTYLQELIRRKLGPKTIQG---YR 330
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
GY+ RR IER G + GV +TNALELG+D+G + + G+PGS+AS WQQAGR+
Sbjct: 331 GGYLPSQRREIERGLRNGDIMGVVSTNALELGVDIGQLQACVITGYPGSVASTWQQAGRA 390
Query: 625 GRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
GRR+ S+ V V PLDQY + PE F E I+ N +L HL CAA E P
Sbjct: 391 GRRQGESVVVMVGSSTPLDQYVIANPEYFFDRSPETARINPDNLIILVDHLKCAAYELPF 450
Query: 685 SLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESE 744
+ FG I +L+ + L S + ++ ++ P+H IS+R+ E
Sbjct: 451 R---EGDTFGRAEIVEILE-----FLTEEQVLHYSRGKWFWM-NDSFPAHNISLRSASQE 501
Query: 745 RYEVIDM--QSNE-VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADL 801
+ID+ + NE V+ E++ + +++ A+Y+HQG + V++L+ K A ++ +
Sbjct: 502 NVVIIDISERGNERVIGEMDRFSSMTLLHDEAIYLHQGTQFQVEKLDYEEKKAYVREVQV 561
Query: 802 KYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQA------LACTVTTTWFGFYRLWR 855
Y+T N A + K+ + ++ AQ+ +A T F
Sbjct: 562 DYYTD-----------ANLAVSLKVLEQDQSRRHAQSTLAYGEVAVNAMATIF------- 603
Query: 856 GSGIIFDTVE------LYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLH 909
I F+T E ++LP+ + A WI +++ + GL +H L H
Sbjct: 604 -KKIKFETHENIGSGPIHLPEEELHTNAAWIGFSEALLGEIGTE-DVERGLVGLAHVLQH 661
Query: 910 VVPIYVRCNFSDLAPECPNPHDSRYFPER---------ILLYDRHPGGTGVSKQV 955
V P++V C +P D P+R I LYDR+PGG G+S+QV
Sbjct: 662 VAPLFVMC----------DPMDLHVIPQRKAVHSQEPTIFLYDRYPGGIGLSEQV 706
>gi|456391882|gb|EMF57240.1| ATP-dependent RNA helicase [Streptomyces bottropensis ATCC 25435]
Length = 737
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 251/716 (35%), Positives = 373/716 (52%), Gaps = 55/716 (7%)
Query: 246 SALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL------SHDL 299
+A+++ GI ++HQA +L G++VVVAT T+SGKSL Y +PVL L +
Sbjct: 3 AAVQAAGIEHPWAHQARVAEHALDGESVVVATGTASGKSLAYLVPVLSRLLEGSEAPNGR 62
Query: 300 SSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNP 359
++ALY+ PTKALA DQLR++ ++ ++ VYDGDT ++R W+R A ++TNP
Sbjct: 63 GATALYLAPTKALAADQLRSVKEFSQPLGNAVRPAVYDGDTPVEEREWVRQYANYVLTNP 122
Query: 360 DMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTA 419
DMLH ILP H ++S L L+ +VVIDE H Y+G FG H A
Sbjct: 123 DMLHRGILPSHPRWSSFLRALK-------------------YVVIDECHTYRGVFGSHVA 163
Query: 420 LILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVL 479
+LRRL RLC+ YG++P F+ ++AT+A P L + E + +D SP + +F L
Sbjct: 164 HVLRRLRRLCAR-YGAEPVFLLASATAAEPSVAARRLTGVPVTE-VADDASPRGELVFAL 221
Query: 480 WNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCE 539
W P T++ R A + ++ +E + L ++V G+R +AF RSR+ E
Sbjct: 222 WEP----------PLTELHGERGAPVRRTA-TAETADLLTDLVVQGVRSVAFVRSRRGAE 270
Query: 540 LVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDV 599
L+ +E L E L + YR GY+ E+RR +ER G+L G+AAT ALELGID+
Sbjct: 271 LISVIAQERLREVDRSLARRVAAYRGGYLPEERRALERALHSGELLGLAATTALELGIDI 330
Query: 600 GHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIE 659
+D L G+PG+ ASLWQQAGR+GR + +LAV VA + PLD + + +PE LF P+E
Sbjct: 331 SGLDAVLIAGYPGTRASLWQQAGRAGRSGQGALAVLVARDDPLDTFLVHHPEALFDQPVE 390
Query: 660 CCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSS 719
+D N VL HL AA E PL+ D FG + L+ L
Sbjct: 391 STVLDPDNPYVLAPHLCAAAAELPLT-DEDLPLFGPACEELLPQLEAAKLLRR------R 443
Query: 720 AKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQG 779
AK + + E+ T IR ++++ + +L ++ A V+EGAV++HQG
Sbjct: 444 AKAWHWTRRERAADLT-DIRGQGGRPVQIVETGTGRLLGTVDAGAAHTTVHEGAVHLHQG 502
Query: 780 HTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQAL 839
TYLV+EL+L +AL Q+AD Y T RD T I V + +L + +
Sbjct: 503 RTYLVRELDLDDSVALVQQADPPYSTVARDTTAISVLETDTE--VPWGDGRLCFGSVE-- 558
Query: 840 ACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSG 899
VT F R +G + +L LP + ++AVW V + + G
Sbjct: 559 ---VTNQVVSFLRRRLITGEVLGESKLDLPPRTLRTRAVWWTVTEDQLDAARIDPEILGG 615
Query: 900 -LHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
LHAA HA + ++P++ C+ D+ H P + +YD HPGG G +++
Sbjct: 616 ALHAAEHASIGMLPLFATCDRWDIGGVSVPLHPDTLLPT-VFVYDGHPGGAGFAER 670
>gi|271962065|ref|YP_003336261.1| DEAD/DEAH box helicase [Streptosporangium roseum DSM 43021]
gi|270505240|gb|ACZ83518.1| DEAD/DEAH box helicase domain-containing protein [Streptosporangium
roseum DSM 43021]
Length = 815
Score = 394 bits (1013), Expect = e-106, Method: Compositional matrix adjust.
Identities = 264/756 (34%), Positives = 383/756 (50%), Gaps = 62/756 (8%)
Query: 207 VEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMA 266
+ HL + ++ HVE + AR+A PD + ++ + + GIS L+SHQAE+
Sbjct: 53 LRHLLGVPARRDRVTHVEHVPARQAGQARWPDWVHESLVTRWANHGISGLWSHQAEAAEL 112
Query: 267 SLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKA 326
G+NV++AT T+SGKSL Y +P L ++ + LY+ PTKALA DQLRAL +
Sbjct: 113 VHRGQNVIIATGTASGKSLSYLVPALSSVLD--GGTILYLTPTKALAADQLRALNELDVP 170
Query: 327 FDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFS 386
+ +DGDT+ ++R W+R +A ++TNPDMLH ++LP H +S LR+
Sbjct: 171 ---ELRAATFDGDTSFEERAWVRKHANYVLTNPDMLHRTLLPRHANWSSFWRRLRM---- 223
Query: 387 LVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATS 446
VV+DE H Y+G FG H A ILRRL R+C+ YGS P+FV S+AT+
Sbjct: 224 ---------------VVVDECHGYRGVFGSHVAQILRRLRRVCTR-YGSAPAFVLSSATA 267
Query: 447 ANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANK 506
+ P M L L E + D SP F LW P TD+ A +
Sbjct: 268 SEPGAFAMRLTGLQMAE-VTTDASPRGATTFALWEP----------PLTDLRGEGGAPLR 316
Query: 507 TSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEE-----TAP-HLVDSI 560
+ +E + L A++V +R +AF RSR+ E V TR L++ AP L D +
Sbjct: 317 RPA-TAESADLLADLVIADVRTLAFVRSRRAAESVALTTRAKLQDLVFDVGAPGDLPDKV 375
Query: 561 CVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQ 620
YRAGY+AEDRR +E+ F G L G+A TNALELG+DV +D L G+PG+ ASLWQQ
Sbjct: 376 AAYRAGYLAEDRRGLEKAFRSGDLLGLATTNALELGVDVSGLDAVLIAGWPGTRASLWQQ 435
Query: 621 AGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAAL 680
AGR+GR + +LAV +A + PLD Y + +PE LF P+E +D N VL HL AA
Sbjct: 436 AGRAGRAGQDALAVLIARDDPLDTYLVHHPEALFGRPVEAIVLDPDNPYVLGPHLCAAAA 495
Query: 681 EHPLSLIYDE-KYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIR 739
E PL+ DE + FG + L G L A + + E+ + IR
Sbjct: 496 EIPLT--PDELQIFGPTAKEVLADLVTEGLLR------ERATGWFWTRRERA-TDLADIR 546
Query: 740 AIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKA 799
+V++ + +L ++E A V+ GAVY+HQG TYLV EL+L + +AL +
Sbjct: 547 GAGGAPVQVVEASTGRLLGTVDEPSAHTTVHTGAVYVHQGETYLVVELDLEAGVALVEAG 606
Query: 800 DLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGI 859
Y T RD T+I V + L + VT + + SG
Sbjct: 607 TPDYTTFARDVTEISV-------LESLRSHPLGPGELHFGSVEVTRQVVSYLKRRAQSGE 659
Query: 860 IFDTVELYLPKYSYESQAVWIQVPQS-VKAVVEQNFSFRSGLHAASHALLHVVPIYVRCN 918
+ L LP + ++AVW +P S V ++ E HAA HA + ++P++ C+
Sbjct: 660 LLGDEPLDLPPRTLRTRAVWWTLPTSAVVSLAEDGLDLGGAAHAAEHASIGLLPLFATCD 719
Query: 919 FSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
D+ H + +YD H GG G +++
Sbjct: 720 RWDIGGVSTELHPDTGL-LTVFVYDGHEGGAGFAER 754
>gi|398817041|ref|ZP_10575673.1| helicase family protein with metal-binding cysteine cluster
[Brevibacillus sp. BC25]
gi|398031151|gb|EJL24545.1| helicase family protein with metal-binding cysteine cluster
[Brevibacillus sp. BC25]
Length = 760
Score = 394 bits (1012), Expect = e-106, Method: Compositional matrix adjust.
Identities = 255/775 (32%), Positives = 394/775 (50%), Gaps = 103/775 (13%)
Query: 206 MVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIM 265
+++H++ + + H I AR+A V P L + AL + GI LY+HQ S
Sbjct: 10 ILDHIKTDERFRDNIAHWRVIPAREAKSVPFPSELDGRIRDALTNRGIPSLYTHQETSFR 69
Query: 266 ASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTK 325
GK++V T T+SGKS+CY+LP+L+ LS D + ALY+FPTKALAQDQ L +
Sbjct: 70 HVREGKHIVAVTPTASGKSMCYHLPILQTLSEDTQARALYLFPTKALAQDQKAELHELIT 129
Query: 326 AFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAF 385
SI YDGDT R +R ++ITNPDMLH +ILP+H ++ ++F
Sbjct: 130 EMGLSIKSETYDGDTPANIRQMVRKAGNIVITNPDMLHSAILPHHTKW---------VSF 180
Query: 386 SLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTAT 445
F ++++VIDE H Y+G FG H A ++RRL R+C+ YGS P F+ ++AT
Sbjct: 181 ----------FEHLKYIVIDELHTYRGVFGSHVANVIRRLKRICA-FYGSHPQFICTSAT 229
Query: 446 SANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAAN 505
ANP++ L +EL+ N+G+P K F+ +NP V+NK + R +A
Sbjct: 230 IANPKQLAEALTE-EEVELVNNNGAPSGIKHFLFYNP-----PVVNKQL----NIRRSAT 279
Query: 506 KTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREIL-EETAPHLVDSICVYR 564
+ I+E + + +G++ I F RSR E++L+Y +E++ + P + YR
Sbjct: 280 LEARDITE------QFLINGIQTILFARSRVRVEILLTYLQELIRRKLGPKTIQG---YR 330
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
GY+ RR IER G + GV +TNALELG+D+G + + G+PGS+AS WQQAGR+
Sbjct: 331 GGYLPSQRREIERGLRNGDIMGVVSTNALELGVDIGQLQACVITGYPGSVASTWQQAGRA 390
Query: 625 GRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
GRR+ S+ V V PLDQY + PE F E I+ N +L HL CAA E P
Sbjct: 391 GRRQGESVVVMVGSSTPLDQYVIANPEYFFDRSPETARINPDNLIILVDHLKCAAYELPF 450
Query: 685 SLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESE 744
+ FG I +L+ + L S + ++ ++ P+H IS+R+ E
Sbjct: 451 R---EGDTFGRAEIVEILE-----FLTEEQVLHYSRGKWFWM-NDSFPAHNISLRSASQE 501
Query: 745 RYEVIDM--QSNE-VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADL 801
+ID+ + NE V+ E++ + +++ A+Y+HQG + V++L+ K A ++ +
Sbjct: 502 NVVIIDISERGNERVIGEMDRFSSMTLLHDEAIYLHQGTQFQVEKLDYEEKKAYVREVQV 561
Query: 802 KYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQA------LACTVTTTWFGFYRLWR 855
Y+T N A + K+ + ++ AQ+ +A T F
Sbjct: 562 DYYTD-----------ANLAVSLKVLEQDQSRRHAQSTLAYGEVAVNAMATIF------- 603
Query: 856 GSGIIFDTVE------LYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLH 909
I F+T E ++LP+ + A WI +++ + GL +H L H
Sbjct: 604 -KKIKFETHENIGSGPIHLPEEELHTNAAWIGFSEALLGEIGTE-DVERGLVGLAHVLQH 661
Query: 910 VVPIYVRCNFSDLAPECPNPHDSRYFPER---------ILLYDRHPGGTGVSKQV 955
V P++V C +P D P+R I LYDR+PGG G+S+QV
Sbjct: 662 VAPLFVMC----------DPMDLHVIPQRKAVHSQEPTIFLYDRYPGGIGLSEQV 706
>gi|392946020|ref|ZP_10311662.1| helicase/secretion neighborhood putative DEAH-box helicase [Frankia
sp. QA3]
gi|392289314|gb|EIV95338.1| helicase/secretion neighborhood putative DEAH-box helicase [Frankia
sp. QA3]
Length = 875
Score = 394 bits (1012), Expect = e-106, Method: Compositional matrix adjust.
Identities = 254/745 (34%), Positives = 383/745 (51%), Gaps = 56/745 (7%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
M HVE ++AR P+ + + + GI + ++HQA + A+ AG++VV+AT T
Sbjct: 119 MTHVEPVAARPGRRAPWPEWVDPVLRGRWVAAGIDEPWTHQAAAAEAAHAGRSVVLATGT 178
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGD 339
+SGKSL Y +PVL L + ALY+ PTKALA DQLRA+ A+ + YDGD
Sbjct: 179 ASGKSLGYLMPVLSRLLAQPGARALYLSPTKALAHDQLRAVRALRLT---GVRAATYDGD 235
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T +R W+R +A L++TNPDMLH ILP H ++++ L LR
Sbjct: 236 TPAAERDWVRAHAGLVLTNPDMLHRGILPQHRRWAQFLRGLR------------------ 277
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
FVVIDE H Y+G FG H A ++RRL R+C+ YGS+P F+ ++ATSA+P L +
Sbjct: 278 -FVVIDECHGYRGVFGAHVAAVVRRLRRVCAR-YGSEPVFLLASATSADPGLSAGRLTGV 335
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPI-----SEV 514
+E+I +DG+P FVL+ P R + A + +P+ +E
Sbjct: 336 D-VEVIDDDGAPRGPMDFVLYEPPLLWRRQAGREGDSAPGEPRGAGENGAPVRRSVTAES 394
Query: 515 SYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRR 574
+ L A++V G+R + F RSR+ E+V R L + L D + YRAGY+ E+RR
Sbjct: 395 ADLLADLVADGVRTLVFVRSRRSAEVVAVTARRELGQVGSDLADRVAAYRAGYLPEERRE 454
Query: 575 IERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAV 634
+ER G L GVA T+ALELG+D+ +D T+ GFPG++ASLWQQAGR+GR + SLAV
Sbjct: 455 LERRLRAGDLLGVATTSALELGVDISGLDATVTAGFPGTLASLWQQAGRAGRDGQRSLAV 514
Query: 635 YVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFG 694
VA + PLD Y + +PE +F +E C D N VL L CAA E PL+ D FG
Sbjct: 515 LVARDDPLDTYLVHHPEAVFGRSVEACVFDPDNPYVLAPQLECAAAELPLTEA-DLGLFG 573
Query: 695 SGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN 754
+ + L RG L P+ + P + IR +++ +
Sbjct: 574 PAAARVVDDLVRRGRLRRRPT-------GWFWTQRARPE--VDIRGTGGPPVRIVETATG 624
Query: 755 EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIH 814
+L ++ + A V+ GAVY+HQG +++V +L+L +A + ++ T R++TDI
Sbjct: 625 RLLGTVDAAAAHSAVHPGAVYLHQGSSFVVDDLDLPESVAFVHEESPEWTTVAREHTDIR 684
Query: 815 VSGGNNAYATKISKDQLTKTTAQALACT-VTTTWFGFYRLWRGSGIIFDTVELYLPKYSY 873
+ + S+ ++ L VT G+ R +G + L LP
Sbjct: 685 I--------VESSRSRVLPDVEVHLGVVEVTNQVVGYQRRLVATGEVLGQEPLNLPPRQL 736
Query: 874 ESQAVWIQVPQSV--KAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLA--PECPNP 929
++AVW V + A VE +HAA HA + ++P++ C+ D+ +P
Sbjct: 737 RTRAVWYTVTDDLLAGAAVEAA-DVPGAVHAAEHAAIGLLPLFATCDRWDIGGVSTALHP 795
Query: 930 HDSRYFPERILLYDRHPGGTGVSKQ 954
R + +YD H GG G +++
Sbjct: 796 DTGR---TSVFVYDGHAGGAGFAER 817
>gi|326777716|ref|ZP_08236981.1| helicase/secretion neighborhood putative DEAH-box helicase
[Streptomyces griseus XylebKG-1]
gi|326658049|gb|EGE42895.1| helicase/secretion neighborhood putative DEAH-box helicase
[Streptomyces griseus XylebKG-1]
Length = 822
Score = 394 bits (1012), Expect = e-106, Method: Compositional matrix adjust.
Identities = 261/767 (34%), Positives = 395/767 (51%), Gaps = 55/767 (7%)
Query: 196 SDKSQLLPLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISK 255
S S+ P +++ L G G ++ H E + R PD + SA++ GI+
Sbjct: 40 SGGSRPSPAMILDRLATGAGRAARITHTEHLPPRSGTHAIWPDRIRPEVISAIERAGIAH 99
Query: 256 LYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL------SHDLSSSALYMFPT 309
++HQA + +L G++VV+AT T+SGKSL Y PVL L + ++ALY+ PT
Sbjct: 100 PWAHQATAAEHALDGESVVIATGTASGKSLAYLAPVLSTLLDGSEAPNGRGATALYLAPT 159
Query: 310 KALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPY 369
KALA DQ R++ A+T ++ VYDGDT ++R W+R A ++TNPDMLH ILP
Sbjct: 160 KALAADQRRSVKALTAPLGHAVRPAVYDGDTPVEEREWVRQYANYVLTNPDMLHRGILPS 219
Query: 370 HGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLC 429
H +++ L LR +VVIDE H Y+G FG H A +LRRL RLC
Sbjct: 220 HPRWASFLRALR-------------------YVVIDECHTYRGVFGSHVAQVLRRLRRLC 260
Query: 430 SHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSV 489
+ YG++P F+ ++AT+A+P L L E + +D SP + +F LW P
Sbjct: 261 AR-YGAEPVFLLASATAADPAAAAGRLTGLPVRE-VSDDASPRGELVFALWEP------- 311
Query: 490 LNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREIL 549
TD+ + A + ++ +E + L ++ +R +AF RSR+ EL+ +E L
Sbjct: 312 ---PLTDLHGEKGAPVRRTA-TAETADLLTDLTLQDVRSVAFVRSRRGAELISMIAKERL 367
Query: 550 EETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLG 609
E L + YR GY+ E+RR +ER G+L G+AAT ALELGIDV +D + G
Sbjct: 368 AEVDRSLPKRVAAYRGGYLPEERRALERALHSGELLGLAATTALELGIDVSGLDAVVISG 427
Query: 610 FPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHK 669
+PG+ ASLWQQAGR+GR + +LAV VA + PLD Y + +PE LF+ P+E +D N
Sbjct: 428 YPGTRASLWQQAGRAGRSGQGALAVLVARDDPLDTYLVHHPEALFQQPVESTVLDPDNPY 487
Query: 670 VLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHE 729
VL HL AA E PL+ D FG + + L+ L A + + E
Sbjct: 488 VLAPHLCAAAAELPLTE-PDIALFGPAVPELLPQLEAAKLLR------RRASGWHWTRRE 540
Query: 730 KMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNL 789
+ + IR ++++ + +L ++E+ A V+EGAV++HQG T+LV++L+L
Sbjct: 541 RA-ADLADIRGGGGRPVQIVEEGTGRLLGTVDEAAAHTAVHEGAVHLHQGRTHLVRKLDL 599
Query: 790 SSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFG 849
+AL ++A+ Y T RD T I V + T+I Q + VT
Sbjct: 600 EDSVALVEQAEPPYSTVARDTTAITVLETD----TEIPWGQGRLCYG---SVEVTNQVVS 652
Query: 850 FYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSG-LHAASHALL 908
F R +G + +L LP + ++AVW V + N G LHAA HA +
Sbjct: 653 FLRRKLITGEVLGETKLDLPPRTLRTRAVWWTVTEDQLDAARINPEILGGALHAAEHASI 712
Query: 909 HVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
++P++ C+ D+ H P + +YD HPGG G +++
Sbjct: 713 GLLPLFATCDRWDIGGVSVPLHPDTLLPT-VFVYDGHPGGAGFAERA 758
>gi|258404214|ref|YP_003196956.1| DEAD/DEAH box helicase [Desulfohalobium retbaense DSM 5692]
gi|257796441|gb|ACV67378.1| DEAD/DEAH box helicase domain protein [Desulfohalobium retbaense
DSM 5692]
Length = 962
Score = 394 bits (1011), Expect = e-106, Method: Compositional matrix adjust.
Identities = 234/718 (32%), Positives = 379/718 (52%), Gaps = 83/718 (11%)
Query: 249 KSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFP 308
+ GI +L+SHQAE++ AG++ +AT T+SGKSL + LP+ EAL D S AL ++P
Sbjct: 53 RQAGIDRLFSHQAEAVDHIRAGRHTAIATPTASGKSLTFALPIAEALCQDPESRALLLYP 112
Query: 309 TKALAQDQLRALLAMTKAF--DASIDIGVYDGDTTQKDRMWLRDNA-RLLITNPDMLHMS 365
KALAQDQLRAL A T+ + + +YDGDT Q +R +R N LL TNPDMLH+
Sbjct: 113 LKALAQDQLRALQAFTQPWPLEQQPRAAIYDGDTPQAERGRIRANPPHLLCTNPDMLHLG 172
Query: 366 ILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRL 425
+ P+H + S LR FV++DE H Y+G G H A + RRL
Sbjct: 173 LTPHHHSWGEFFSRLR-------------------FVIVDEVHTYRGVMGSHMAWVFRRL 213
Query: 426 CRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSC 485
R+C + +GSDP+F+F++AT NP + LA + +E + +G+ ++ V
Sbjct: 214 RRICRY-WGSDPTFIFASATIGNPAQLAQNLAGVP-VEAVTENGAAQGKRHMVF------ 265
Query: 486 LRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYT 545
L ++ QT + + A + GLR I + +SRK EL+ +
Sbjct: 266 LDALEGAPQTALGLLQAALAR------------------GLRTIVYTQSRKYTELLAMW- 306
Query: 546 REILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVT 605
L + +P D + YR+G++ E+RR IE G L GV +T+ALELGID+G++D+
Sbjct: 307 ---LSQRSPRFADRVSAYRSGFLPEERREIETALANGSLLGVISTSALELGIDIGNLDLC 363
Query: 606 LHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDA 665
L +G+PGS+ + WQ++GR GR + S + + E LDQYFM +P+ F P E I+
Sbjct: 364 LLVGYPGSVMATWQRSGRVGRGRQDSATILLGGEDALDQYFMHHPQAFFALPPEAAVINP 423
Query: 666 QNHKVLEQHLVCAA----LEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAK 721
N + ++HLVCAA L+H L+ D + + L+ RG L S +
Sbjct: 424 DNPVIRDRHLVCAAADLPLQHTEPLVTDPVH-----RRAVHRLEQRGELLQSGSGE---- 474
Query: 722 IFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHT 781
E++ H K P +S+R ++D S E + ++ +A + + GAVY+H+G T
Sbjct: 475 --EWLSHRKTPHRQVSLRGT-GRTLPILDSDSREHIGSVDGYRALRETHPGAVYLHRGQT 531
Query: 782 YLVKELNLSSKIALCQKADLKYFTKTRDY---TDIHVSGGNNAYATKISKDQLTKTTAQA 838
Y+V L+L + L +K ++YFT+ R + T + + + + ++I + +L
Sbjct: 532 YVVDRLDLEEGMVLARKQTVQYFTRVRAHKETTILETTEWAHVWGSRIHRGRL------- 584
Query: 839 LACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNF-SFR 897
VT T G+ + + EL LP + +E++ +W+++P +V+ +E+ + F
Sbjct: 585 ---RVTETVTGYEKRHVRGQRLLRMHELDLPPHVFETEGIWLEIPDTVRQELEKRYLHFM 641
Query: 898 SGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
G+HA HAL+ ++P+ V + +DL H+ + + +YD PGG G+++Q
Sbjct: 642 GGIHAVEHALIGIMPLLVLADRNDLGGISTVGHE-QLTTAAVFVYDGTPGGAGLTRQA 698
>gi|348172951|ref|ZP_08879845.1| DEAD/DEAH box helicase-like protein [Saccharopolyspora spinosa NRRL
18395]
Length = 793
Score = 394 bits (1011), Expect = e-106, Method: Compositional matrix adjust.
Identities = 252/741 (34%), Positives = 368/741 (49%), Gaps = 59/741 (7%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
HVE ++AR A + P AL+ G + + HQ E A AG+NVVVAT T+S
Sbjct: 29 HVERLTARPARTADWPKWAPPRLVDALRDRGAREPWVHQVEGAEAVWAGENVVVATGTAS 88
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL--LAMTKAFDASIDIGVYDGD 339
GKSL Y LPVL L D ++ALY+ PTKAL DQLR + L M + AS YDGD
Sbjct: 89 GKSLVYQLPVLSTLLDDDRATALYLAPTKALGADQLRTIDELGMREVRAAS-----YDGD 143
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T Q +R W+R +AR + TNPDMLH +LP H +++R F +
Sbjct: 144 TPQVERDWVRAHARWIFTNPDMLHYGVLPGHSRWARF-------------------FRQL 184
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
+V+DE H Y+G FG H AL+LRRL R+ H YG+DP FV ++AT ++P L +
Sbjct: 185 SHIVVDECHTYRGVFGSHVALLLRRLRRVAQH-YGADPGFVLASATVSDPASLAARLTGV 243
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
S + +DGSP + W P L ++ ++ + R AA +E + +
Sbjct: 244 SC-RAVTDDGSPRGARTIAFWEP-PLLDEIIGENGAPV---RRAAG------TEAARIMT 292
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDF 579
E+V R +AF RSR+ EL + L + L + YR GY+ EDRR +ER
Sbjct: 293 ELVIEDARTLAFIRSRRGVELAALSAQRALSDVDESLAQKVAAYRGGYLPEDRRELERSL 352
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFE 639
G+L VA TNALELG+D+ +D + G+PG++AS WQQAGR+GR +L V+VA +
Sbjct: 353 LSGELRAVATTNALELGVDISGLDAVVVAGYPGTLASFWQQAGRAGRDGEGALVVFVARD 412
Query: 640 GPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSS 699
PLD Y + +P + P+E +D N VLE HL CAA E PL + + G
Sbjct: 413 DPLDTYLVHHPPAMLDRPVEATVLDPTNPYVLEPHLACAAAELPLDEDSFDVFGGEHARR 472
Query: 700 GITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEE 759
+ L G L P + + E+ P + +R V++ +S +L
Sbjct: 473 AVEALTADGVLRKRP------HGWFWTSRER-PHRNVELRGAGGHPIAVVEGESGRMLGT 525
Query: 760 IEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGN 819
++ A V+ GAVY+H+G +++V EL+L + IAL + + + T R+ DI V
Sbjct: 526 VDPDSACGTVHPGAVYLHRGESFVVDELDLETGIALVHQENPDWTTSPRNVVDISV---- 581
Query: 820 NAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVW 879
T D T VT+ G+ R R SG + D V L LP + ++AVW
Sbjct: 582 --LRTIERHDTGRGVTVCLGEVEVTSQVVGYLRK-RPSGEVLDQVPLDLPAQTLLTRAVW 638
Query: 880 IQVPQSVKAVVEQNFS------FRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSR 933
V + A + LHAA HA + ++P++ C+ D+ H +
Sbjct: 639 YTVGDELLAGSAPGGAGLDPALVPGALHAAEHAAIGLLPLFATCDRWDIGGVSTALH-AD 697
Query: 934 YFPERILLYDRHPGGTGVSKQ 954
+ ++D HPGG G + +
Sbjct: 698 TGEATVFVHDGHPGGAGFADR 718
>gi|453363385|dbj|GAC80815.1| putative ATP-dependent helicase [Gordonia malaquae NBRC 108250]
Length = 778
Score = 394 bits (1011), Expect = e-106, Method: Compositional matrix adjust.
Identities = 245/744 (32%), Positives = 377/744 (50%), Gaps = 59/744 (7%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+ H+ I R A E P+ + + A G+ + HQ + + G++V V T T
Sbjct: 26 LTHMAVIPTRTAQFDEWPEWVHPQVREAFVERGVRTPWRHQIAAANHAREGRHVCVCTGT 85
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRA---LLAMTKAFDASIDIGVY 336
+SGKSL Y LP+L + D +++ALY+ PTKAL DQLRA L+ AF A + Y
Sbjct: 86 ASGKSLAYQLPILTTFAEDPNATALYLSPTKALGSDQLRATAQLITGRSAF-AHLQPCAY 144
Query: 337 DGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIF 396
DGDT + R W R ++R + TNPDMLH+ I H ++ + S L+
Sbjct: 145 DGDTDSELRQWARQHSRWIFTNPDMLHVGICSSHPKWRQFFSKLK--------------- 189
Query: 397 LFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMEL 456
++V+DE H Y+G FG HTAL+L+R R+ YG+DP + ++AT +NP + L
Sbjct: 190 ----YIVVDECHHYRGVFGSHTALVLQRTLRIARR-YGADPVVIGASATVSNPAQALSRL 244
Query: 457 ANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSY 516
+ + +D SP ++ +W P + D N A + +E +
Sbjct: 245 IGEDVVA-VTDDTSPHGERTVAMWEPGF----LEGSGGEDPTTGENGAPVRRAAGAEAAR 299
Query: 517 LFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIE 576
L A+ V G R + F RSR+ E+ +++L E+AP LVD + YRAGY+A+DRR++E
Sbjct: 300 LLADFVIEGARTLCFVRSRRGVEVTAVKAKQLLAESAPELVDRVAAYRAGYLADDRRKLE 359
Query: 577 RDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYV 636
R G+L GVA TNALELG+D+ +D + G+PG++AS WQQAGR+GRR SL V +
Sbjct: 360 RALSDGELLGVATTNALELGVDISGLDAVVVAGYPGTVASFWQQAGRAGRRGEGSLVVMI 419
Query: 637 AFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSG 696
A + PLD Y + +PE L + P+E D N VL HL+CAA E P++ E + G
Sbjct: 420 ARDDPLDTYLVHHPEALLERPVEATVTDPTNPYVLGPHLLCAATEFPITPDEAEAWHAVG 479
Query: 697 LSSGITT---LKNR--GYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDM 751
+ + LK R G+ + P LD P I IR + ++D
Sbjct: 480 VIDELVVDGQLKRRKAGWYPA-PGLD--------------PHGDIDIRGGIGGQVLIVDA 524
Query: 752 QSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYT 811
++ +L ++ S+A V+ GAVY+HQG +++V EL+L +AL + + T R+ +
Sbjct: 525 TTSRLLGTVDSSRAKTSVFPGAVYLHQGESFVVDELDLDDGLALAHPEEPDWTTSPREVS 584
Query: 812 DIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKY 871
D+ + + + T + TVT+ GF R SG I D V L LP+
Sbjct: 585 DVVID-------RVVEQRSFGPLTVAFVEVTVTSQVVGFLRKAL-SGEILDQVALDLPEE 636
Query: 872 SYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPH 930
S ++AV + P ++ F LHAA HA + ++ + C+ D+ + H
Sbjct: 637 SLPTRAVMYTLEPDTMVDAGITPDKFPGALHAAEHAAIGMLGLVATCDRWDIGGLSTDVH 696
Query: 931 DSRYFPERILLYDRHPGGTGVSKQ 954
P + +YD PGG G +++
Sbjct: 697 PQTALPT-VFVYDGFPGGAGFAER 719
>gi|383775493|ref|YP_005460059.1| putative DEAD/DEAH box helicase [Actinoplanes missouriensis 431]
gi|381368725|dbj|BAL85543.1| putative DEAD/DEAH box helicase [Actinoplanes missouriensis 431]
Length = 785
Score = 394 bits (1011), Expect = e-106, Method: Compositional matrix adjust.
Identities = 260/774 (33%), Positives = 386/774 (49%), Gaps = 63/774 (8%)
Query: 194 RCSDKSQLLPLEMVEHLR-KGIGSQ-GQMVHVEDISARKAVLVEIPDALLDNTKSALKST 251
+C + P E++ LR +G ++ + H+E + R P + A +
Sbjct: 2 QCVTSTAFGPAELLHRLRTRGTAAEVSPITHIERVPPRAGQAAPWPGWTDPAVRDAFTAQ 61
Query: 252 GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKA 311
I + HQA + + G +VV+AT T+SGKSL Y LP L AL+ D ++ LY+ PTKA
Sbjct: 62 RIIAPWKHQAAAATLAWEGTHVVLATGTASGKSLAYQLPALSALARDPKATVLYLSPTKA 121
Query: 312 LAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHG 371
LA DQLRA+ + D + +DGDT +++R W+R ++R ++TNPDMLH S+LP H
Sbjct: 122 LAADQLRAIARL--GLDG-VRPATFDGDTPREEREWVRQHSRFVLTNPDMLHHSLLPGHA 178
Query: 372 QFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSH 431
++ L L +VVIDE H Y+G FG H A +LRRL R +
Sbjct: 179 RWGVFLRRLS-------------------YVVIDECHTYRGVFGSHVAHVLRRLRRAAA- 218
Query: 432 VYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSV-- 489
YGS P+F+ ++ATS +P L L E+ + D SP F LW P S
Sbjct: 219 RYGSSPTFILASATSGDPAGAASRLTGLDVTEVTE-DTSPRGGVTFALWEPPLLPASSVS 277
Query: 490 LNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREIL 549
L +D D + S+ + E + L + V G R +AF RSR+ E+V S TR L
Sbjct: 278 LPSDTSDFTDVELPPIRRSA-LRETADLLTDAVVAGTRTLAFVRSRRGAEVVASMTRRSL 336
Query: 550 EETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLG 609
+E P L D + YRAGY+ EDRR IER G+L G+A+TNALELG+D+ +D L G
Sbjct: 337 DEAVPGLGDRVAAYRAGYLREDRRAIERSLLSGELLGLASTNALELGVDLVGLDAVLICG 396
Query: 610 FPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHK 669
+PG+ ASLWQQAGR+GR +LAV +A + PLD Y + +PE +F P+E +D N
Sbjct: 397 YPGTRASLWQQAGRAGRAGGEALAVLIARDDPLDTYLVHHPEAVFGRPVEATVLDPANPY 456
Query: 670 VLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHE 729
VL L CAA E PL+ E + G + + L G L PS Y H
Sbjct: 457 VLGPQLCCAASEAPLTDADLELFGGEAAVAAVHALAGEGVLRRRPS-------GWYWTHR 509
Query: 730 KMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNL 789
P + +R V++ + +L ++ + ++ GAVY+HQG +Y+V EL+L
Sbjct: 510 GRPD--VDLRGTGGAPVAVVESSTGRLLGTVDHGSSHVMLHTGAVYLHQGVSYVVDELDL 567
Query: 790 SSKIALCQKADLKYFTKTRDYTDIHV--------SGGNNAYATKISKDQLTKTTAQALAC 841
IAL + + + T RD T++ V +G + ++
Sbjct: 568 DDAIALVHQQEPDWTTHARDVTNLSVVNVRSYVDAGPVGLFLGEVD-------------- 613
Query: 842 TVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQV-PQSVKAVVEQNFSFRSGL 900
VT + R G+G + DT L LP + AVW + P+++ + + F L
Sbjct: 614 -VTNQVVSYQRRRIGTGEVIDTKPLDLPVRELRTVAVWFTISPEALVSAGVEPADFPGAL 672
Query: 901 HAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
HAA HA + ++P+ C+ D+ H P + +YD HPGG G +++
Sbjct: 673 HAAEHAGIGLLPLIATCDRWDIGGLSTANHADTEAPT-VFVYDGHPGGAGFAER 725
>gi|408530323|emb|CCK28497.1| ATP-dependent RNA helicase [Streptomyces davawensis JCM 4913]
Length = 806
Score = 394 bits (1011), Expect = e-106, Method: Compositional matrix adjust.
Identities = 255/763 (33%), Positives = 387/763 (50%), Gaps = 55/763 (7%)
Query: 199 SQLLPLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYS 258
S++ P ++ L G ++ H E + R+ PD + +A+++ G+ ++
Sbjct: 16 SRVDPGTVLGRLASGPNRASRITHTEHVPPREGRHAVWPDRIRSEVVAAVQNAGVEHPWA 75
Query: 259 HQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL------SHDLSSSALYMFPTKAL 312
HQA + +L G++VVVAT T+SGKSL Y +PVL AL + ++ALY+ PTKAL
Sbjct: 76 HQALAAEHALDGESVVVATGTASGKSLAYLMPVLSALLDGSEAPNGRGATALYLAPTKAL 135
Query: 313 AQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQ 372
A DQ R++ +++ S+ VYDGDT ++R W+R A ++TNPDMLH ILP H +
Sbjct: 136 AADQCRSVKELSQPLGHSVRSAVYDGDTPFEEREWIRQYANYVLTNPDMLHRGILPSHPR 195
Query: 373 FSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHV 432
+S L L+ +VVIDE H Y+G FG H A +LRRL RLC+
Sbjct: 196 WSSFLKALK-------------------YVVIDECHTYRGVFGSHVAQVLRRLRRLCAR- 235
Query: 433 YGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNK 492
YG+ P F+ ++AT+A P L L +E + +D SP + +F LW P
Sbjct: 236 YGASPVFLLASATAAEPSVAARRLTGLPVVE-VADDASPRGELVFALWEP---------- 284
Query: 493 SQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEET 552
T++ + A + ++ +E + L ++ G+R +AF RSR+ EL+ +E L E
Sbjct: 285 PLTELHGEKGAPVRRTA-TAETADLLTDLAVQGVRSVAFVRSRRGAELISVIAQERLAEV 343
Query: 553 APHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPG 612
L + YR GY+ E+RR +E+ G+L G+AAT ALELGIDV +D + G+PG
Sbjct: 344 DRSLARRVAAYRGGYLPEERRALEQALHSGELLGLAATTALELGIDVSGLDAVVISGYPG 403
Query: 613 SIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLE 672
+ ASLWQQAGR+GR + +LAV VA + PLD + + +PE LF P+E +D N VL
Sbjct: 404 TRASLWQQAGRAGRSGQGALAVLVARDDPLDTFLVHHPEALFDQPVESTVLDPNNPYVLA 463
Query: 673 QHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMP 732
HL AA E PL+ D FG + L+ L K + + E+
Sbjct: 464 PHLCAAAEELPLT-DEDLPLFGPACEELLPQLEAAKLLR------RRTKAWHWTRRERAA 516
Query: 733 SHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSK 792
T IR +V++ + +L ++ A V+EGAV++HQG TYLV+ L+L
Sbjct: 517 DLT-DIRGGGGRPVQVVESGTGRLLGTVDAGAAHTTVHEGAVHLHQGRTYLVRSLDLEDS 575
Query: 793 IALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYR 852
+AL + A Y T RD T I V +L + + VT F R
Sbjct: 576 VALVEGASPSYSTVARDTTSISVL--ETDVEVPWGDGRLCYGSVE-----VTNQVVSFLR 628
Query: 853 LWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSG-LHAASHALLHVV 911
+G + +L LP + ++AVW V + + G LHAA HA + ++
Sbjct: 629 RRLITGEVLGETKLDLPPRTLRTRAVWWTVTEDQLDAARISPEILGGALHAAEHASIGLL 688
Query: 912 PIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
P++ C+ D+ H P + +YD HPGG G +++
Sbjct: 689 PLFATCDRWDIGGVSVPLHPDTLLPT-VFVYDGHPGGAGFAER 730
>gi|336114192|ref|YP_004568959.1| DEAD/DEAH box helicase [Bacillus coagulans 2-6]
gi|335367622|gb|AEH53573.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 2-6]
Length = 707
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 237/705 (33%), Positives = 367/705 (52%), Gaps = 66/705 (9%)
Query: 256 LYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQD 315
+Y+HQAE+ ++AGK+ T T+SGK+LCYNLPVLE + + + ALYMFPTKALAQD
Sbjct: 1 MYTHQAEAYQLAMAGKDFTAVTPTASGKTLCYNLPVLETILQNPDARALYMFPTKALAQD 60
Query: 316 QLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSR 375
Q + + + ++ YDGDT R +R ++ITNPDMLH +ILP+H ++
Sbjct: 61 QKSEINEIIEEAGVPVNSYTYDGDTPSNIRQRVRKAGHIVITNPDMLHSAILPHHTKWVS 120
Query: 376 ILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGS 435
NL RFVVIDE H Y+G FG H A +LRRL R+C + YGS
Sbjct: 121 FFENL-------------------RFVVIDELHIYRGVFGSHVANVLRRLKRICRY-YGS 160
Query: 436 DPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQT 495
DP F+ ++AT NP+E +L +ELI +G+P K F+ +NP ++NK
Sbjct: 161 DPVFICTSATIQNPKELAEKLTG-KKMELIDQNGAPSGTKHFLFYNP-----PLVNKP-- 212
Query: 496 DMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH 555
N S EV + E++++ ++ I F RSR E++L Y +EI+++
Sbjct: 213 --------LNIRRSATLEVRKIAGELLKNKIQTIVFARSRVRVEIILKYLQEIVKDELGE 264
Query: 556 LVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIA 615
SI YR GY+ +RR+IE+ G + G+ +TNALELG+D+G + V + G+PG+IA
Sbjct: 265 --KSIMGYRGGYLPTERRKIEQGLRNGDIYGIVSTNALELGVDIGQLQVCIMTGYPGTIA 322
Query: 616 SLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHL 675
S WQQAGR+GRR+ SL + VA PLDQY ++ P F E I+ N +L H+
Sbjct: 323 SAWQQAGRAGRRQGESLVILVAGSSPLDQYIIRNPGFFFNRSPETARINPNNLVILVDHV 382
Query: 676 VCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHT 735
CAA E P F G + G +++ +D + Y ++ P+H
Sbjct: 383 KCAAYELP---------FKKGETFGDVEIEDVLEFLADERILHRRGDAWYWMNDAFPAHN 433
Query: 736 ISIRAIESERYEVIDMQSN---EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSK 792
IS+R+ E +IDM ++ V+ E+++ A ++E A+Y+HQ Y V++L+ K
Sbjct: 434 ISLRSASQENVVIIDMTNSPDVRVIGEMDQFSAMTLLHEEAIYLHQAVQYQVEKLDWEEK 493
Query: 793 IALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYR 852
A ++ + Y+T ++ V + + +K +A+ F +
Sbjct: 494 KAFVREVAVDYYTDANLAVELKVLEQDRETVLQDAKIGYGDVMVRAMPTIFKKIKFNTHE 553
Query: 853 LWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVP 912
GSG I +LP+ + AVW + + V ++ L A+HAL + P
Sbjct: 554 NI-GSGPI------HLPEMELHTNAVWFSMGED---AVPKHL-LEGALTGAAHALQSIAP 602
Query: 913 IYVRCNFSDL--APECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
++ C+ D+ P+ HD + I LYDR+PGG G+S+++
Sbjct: 603 LFAMCDAHDIQAVPQVKAIHDEK---PTIFLYDRYPGGIGLSEKI 644
>gi|291438156|ref|ZP_06577546.1| ATP-dependent RNA helicase [Streptomyces ghanaensis ATCC 14672]
gi|291341051|gb|EFE68007.1| ATP-dependent RNA helicase [Streptomyces ghanaensis ATCC 14672]
Length = 853
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 261/781 (33%), Positives = 393/781 (50%), Gaps = 62/781 (7%)
Query: 186 SSSHSFQRRCSD-KSQLLPLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNT 244
+ +H R +D S P +++ L G ++ H E + R PD +
Sbjct: 4 AKNHRSDRSPTDTASGPAPGTVLDRLASGPSRASRITHTEHLPPRAGRHAPWPDRIRTEV 63
Query: 245 KSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL------SHD 298
+A+++ GI ++HQA + +L G++VVVAT T+SGKSL Y PVL L +
Sbjct: 64 VAAVRAAGIDHPWAHQARAAEHALDGESVVVATGTASGKSLAYLAPVLSTLLDGSEAPNG 123
Query: 299 LSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITN 358
++ALY+ PTKALA DQ R++ ++ S+ VYDGDT ++R W+R A ++TN
Sbjct: 124 RGATALYLAPTKALAADQCRSVKELSHPLGHSVRAAVYDGDTPFEEREWIRQYANYVLTN 183
Query: 359 PDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHT 418
PDMLH +LP H ++S L L+ +VV+DE H Y+G FG H
Sbjct: 184 PDMLHRGVLPSHPRWSSFLKALK-------------------YVVVDECHTYRGVFGSHV 224
Query: 419 ALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFV 478
A +LRRL RLC+ YG+ P F+ ++AT+A P L L +E + +D SP + +F
Sbjct: 225 AQVLRRLRRLCAR-YGASPVFLLASATAAEPAVAARRLTGLPVVE-VADDASPRGELVFA 282
Query: 479 LWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLC 538
LW P T++ R A + ++ +E + L ++ G+R +AF RSR+
Sbjct: 283 LWEP----------PLTELHGERGAPVRRTA-TAEAADLLTDLTVQGVRSVAFVRSRRGA 331
Query: 539 ELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGID 598
EL+ +E L E LV + YR GY+ E+RR +ER G+L G+AATNALELG+D
Sbjct: 332 ELISVIAQERLAEVDRSLVRRVAAYRGGYLPEERRALERALHSGELLGLAATNALELGVD 391
Query: 599 VGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPI 658
V +D + G+PG+ ASLWQQAGR+GR + +LAV VA + PLD + + +PE LF P+
Sbjct: 392 VSGLDAVVLAGYPGTRASLWQQAGRAGRSGQGALAVLVARDDPLDTFLVHHPEALFDQPV 451
Query: 659 ECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDS 718
E +D N VL HL AA E PL+ D FG + L+ L
Sbjct: 452 ESTVLDPDNPYVLAPHLCAAAEELPLT-DEDLDLFGPAAEGLLPQLEAAKLLR------R 504
Query: 719 SAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQ 778
+ + + E+ T IR +V++ + +L ++ A V+EGAV++HQ
Sbjct: 505 RTRAWHWTRRERAADLT-DIRGEGGRPVQVVESGTGRLLGTVDAGAAHASVHEGAVHLHQ 563
Query: 779 GHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQA 838
G TYLV+ L+L +AL ++A+ Y T RD T I V + D A
Sbjct: 564 GRTYLVRSLDLEDSVALVEQANPTYTTVARDTTSISV----------LETDTEVPWGAGR 613
Query: 839 L---ACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFS 895
L + VT F R +G + +L LP + ++AVW V + N
Sbjct: 614 LCYGSVEVTNQVVSFLRRRVITGEVLGETKLDLPPRTLRTRAVWWTVTEDQLDRARINPE 673
Query: 896 FRSG-LHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
G LHAA HA + ++P++ C+ D+ H P + +YD HPGG G +++
Sbjct: 674 ILGGALHAAEHASIGMLPLFATCDRWDIGGVSIPLHPDTLLPT-VFVYDGHPGGAGFAER 732
Query: 955 V 955
Sbjct: 733 A 733
>gi|319948999|ref|ZP_08023099.1| hypothetical protein ES5_06352 [Dietzia cinnamea P4]
gi|319437340|gb|EFV92360.1| hypothetical protein ES5_06352 [Dietzia cinnamea P4]
Length = 777
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 243/742 (32%), Positives = 377/742 (50%), Gaps = 56/742 (7%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+ H D+ AR+A + P L++ G+ + ++HQ + + AG++VVVAT T
Sbjct: 23 LTHAADLPAREARYADWPTWAHPGLVDELRARGVDRPWAHQVATAEHAHAGRHVVVATGT 82
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDA--SIDIGVYD 337
+SGKSL Y LP L AL+ D ++ LY+ PTKAL QDQL +++++ + + YD
Sbjct: 83 ASGKSLGYQLPALSALAEDPNACVLYLAPTKALGQDQLSSVISLVDSVPGLSHVAPASYD 142
Query: 338 GDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFL 397
GDT R ++R+N+R ++TNPDMLH+S+L Q++RIL LR
Sbjct: 143 GDTPSDARPFIRENSRWIVTNPDMLHLSMLGRARQWTRILRGLR---------------- 186
Query: 398 FIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELA 457
FVV+DE H+Y+G FG + AL+LRRL RL + G+ P+FV ++AT+++ L
Sbjct: 187 ---FVVVDECHSYRGVFGSNVALVLRRLDRL-ARALGAAPTFVLASATTSDAGAAATTLV 242
Query: 458 NLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYL 517
+E + +D SP + LW P + V + A + +P+ E S L
Sbjct: 243 GRECVE-VTDDASPQGGRTVALWEP-PLMEGVAGE--------HGAPVRRPAPV-EASAL 291
Query: 518 FAEMVQHGLRCIAFCRSRKLCELVLSYTREILEET----APHLVDSICVYRAGYVAEDRR 573
A +V G R + F RSR E RE L L + YRAGY+A+DRR
Sbjct: 292 MASLVAEGARTLTFVRSRAGAESTALRARERLASEYGARGIELAGRVAAYRAGYLADDRR 351
Query: 574 RIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLA 633
+ER G+L GVA+T+ALELG+D+ +D + GFPG+IAS WQQAGR+GRR + +L
Sbjct: 352 ELERGLAEGELVGVASTSALELGVDISGLDAVVSAGFPGTIASFWQQAGRAGRRGQGALV 411
Query: 634 VYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYF 693
+ VA + PLD Y + +PE L P+E D +N +L L CA E P+S E+
Sbjct: 412 MLVARDDPLDTYLVHHPEALLGRPVEATVTDPRNPVLLAGQLRCAVSERPMS---HEEAR 468
Query: 694 GSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQS 753
G + + L RG + P+ + + P + IR ++D
Sbjct: 469 AWGATEVLEDLAARGLVRRRPA------GWYPAADDHTPHAEVDIRGTGGAEVVIVDAVD 522
Query: 754 NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDI 813
+L I+ +A QV+ GA+Y+HQG +++V EL+L +ALC ++ T R+ I
Sbjct: 523 GRMLGTIDSVRARSQVHPGALYLHQGESFIVDELDLDEGLALCHPEVPEWTTSAREQVSI 582
Query: 814 HVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSY 873
+ + + +T + A VTT G+ R RG G I D L LP+ +
Sbjct: 583 DLI----STLETVPAGPVTLSLAD---VEVTTRVTGYQRRLRG-GEILDVPPLDLPETTL 634
Query: 874 ESQA-VWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDS 932
++A V+ PQ ++ + + LHAA HA + ++P+ C+ D+ H
Sbjct: 635 ATRAVVYTLTPQLLRVAGLEEADWPGALHAAEHAAIGLLPLVATCDRWDIGGVSTALHPD 694
Query: 933 RYFPERILLYDRHPGGTGVSKQ 954
P + +YD + GG G +++
Sbjct: 695 TGLPT-VFVYDGYAGGAGFAER 715
>gi|297564234|ref|YP_003683207.1| DEAD/DEAH box helicase [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296848683|gb|ADH70701.1| DEAD/DEAH box helicase domain protein [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
Length = 764
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 250/739 (33%), Positives = 388/739 (52%), Gaps = 56/739 (7%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATM 278
Q+ H+E ++ V E P + L GI+ +SHQAE+ + +G++V++AT
Sbjct: 20 QVTHIEHVARNDGVSGEWPVWTAPHLVERLADRGITGPWSHQAEAADLARSGRDVIIATG 79
Query: 279 TSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDG 338
T+SGKSL + LP +A+ D + LY+ PTKALAQDQLR + ++ + VYDG
Sbjct: 80 TASGKSLAFLLPAADAI--DAGGTVLYLSPTKALAQDQLRWITDLSLP---GMRTAVYDG 134
Query: 339 DTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLF 398
DT ++R W+R++ ++TNPDMLH ILP HG ++R L LR
Sbjct: 135 DTPAEERSWVREHGNYVLTNPDMLHHGILPRHGAWARFLRRLR----------------- 177
Query: 399 IRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELAN 458
+VVIDEAH Y+G FG H A ILRRL R+C+ Y S P FV ++ATS +P E L
Sbjct: 178 --YVVIDEAHRYRGVFGSHVAQILRRLRRVCAR-YRSRPVFVLASATSGSPAESAARLTG 234
Query: 459 LSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLF 518
+ + + DGSP L P TD+ A + ++P S+ + +
Sbjct: 235 VP-VTAVSRDGSPRPGMSVALVEP----------ELTDLTGEHGAPIRRTAP-SQAAEML 282
Query: 519 AEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LVDSICVYRAGYVAEDRRRIER 577
A++V+ G+R + F RSR+ E+V T+ +L E H L + YR GY+A +RR +E
Sbjct: 283 ADLVRDGVRTLVFVRSRQGAEVVALTTQRLLAERGDHALAGRVAAYRGGYLASERRELEE 342
Query: 578 DFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVA 637
G++ G+A+TNALELG+D+ +D L G+PG++ASLWQQAGR+GRR +LAV++A
Sbjct: 343 ALRSGEILGLASTNALELGVDISGLDAVLIAGWPGTLASLWQQAGRAGRRGEDALAVFIA 402
Query: 638 FEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGL 697
+ PLD Y +PE +F +E +D +N +L HL AA E P++ D FG+
Sbjct: 403 RDDPLDTYLAHHPEAIFGRSVEATVLDPENPHILGPHLCAAAQELPIT-KDDFDLFGA-- 459
Query: 698 SSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVL 757
TT + L L + + + +E+ S IR +++D S ++L
Sbjct: 460 ----TTEERLAELVERRLLRRRPRGWFWTSNERA-SDLADIRGSGGPPVQIVDTGSGQLL 514
Query: 758 EEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSG 817
E++E A V+ GAVY+HQG+TYLV +L+L +AL A+ Y T RD TDI V
Sbjct: 515 GEVDEPAAHGTVHPGAVYLHQGYTYLVDDLDLDEGVALVHPAEPPYSTWARDTTDITVR- 573
Query: 818 GNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQA 877
+ ++ + T V GF R +G + L LP+ + +++A
Sbjct: 574 -----SVLRQEEWPSGATVYFGEVQVVRQVVGFLRRDVRTGSVLGEQSLDLPERTLDTRA 628
Query: 878 VWIQVP-QSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPH-DSRYF 935
VW +P + + + ++ HAA HA + ++P+ C+ D+ + H D+
Sbjct: 629 VWWTLPAEGEERLRREDVGLLGAAHAAEHAAIGLLPLLATCDRWDIGGVSTSVHGDTGRL 688
Query: 936 PERILLYDRHPGGTGVSKQ 954
+ +YD + GG G +++
Sbjct: 689 --TVFVYDGYEGGAGFAER 705
>gi|443671263|ref|ZP_21136376.1| DEAD/DEAH box family ATP-dependent RNA helicase [Rhodococcus sp.
AW25M09]
gi|443416148|emb|CCQ14713.1| DEAD/DEAH box family ATP-dependent RNA helicase [Rhodococcus sp.
AW25M09]
Length = 789
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 251/745 (33%), Positives = 385/745 (51%), Gaps = 54/745 (7%)
Query: 217 QGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVA 276
+ + HV ++ AR + P + + S GI++ ++HQA + + G +VV++
Sbjct: 31 ESPLTHVAELPARASQFTSWPAWVGPEVVQVITSRGIARPWTHQARAATLAAEGNHVVLS 90
Query: 277 TMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFD------AS 330
T T+SGKSL Y LP+L LS D ++ALY+ PTKAL DQLR +++T A
Sbjct: 91 TSTASGKSLAYQLPILTTLSADARATALYLAPTKALGADQLRTTISITDELRELSGELAE 150
Query: 331 IDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTT 390
+ YDGDT + R W R NAR + TNPDMLH+ IL H ++SR L NLR
Sbjct: 151 VFPSAYDGDTPTEIRQWARANARWIFTNPDMLHLGILGSHERWSRFLRNLR--------- 201
Query: 391 EVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPR 450
+VV+DE H Y+G FG + AL+LRRL RLC+ YG+ P FV ++AT++ P
Sbjct: 202 ----------YVVVDECHYYRGVFGSNVALVLRRLRRLCAR-YGASPVFVLASATTSEPG 250
Query: 451 EHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSP 510
L + E + DGSP + LW P L+ V + N A S
Sbjct: 251 RAASRLIG-APCEEVTEDGSPHGARTVALWEP-PLLKEVTGE---------NGAPVRKSA 299
Query: 511 ISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAE 570
+E S + A+++ G R +AF RSR+ E+ + IL + P LV + YRAGY+AE
Sbjct: 300 GAEASRIMADLLVEGARTLAFVRSRRGAEVTALGAQRILADVDPQLVRRVAAYRAGYLAE 359
Query: 571 DRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERP 630
DRR++E D G L GVA TNALELG+D+ +D + GFPG++AS WQQ GR+GRR
Sbjct: 360 DRRKLESDLSDGTLLGVATTNALELGVDIAGLDAVIVAGFPGTVASFWQQGGRAGRRGEG 419
Query: 631 SLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDE 690
SL V VA + PLD Y + +P L P+E D N +L L+CAA+E P++L E
Sbjct: 420 SLLVLVARDDPLDTYLVHHPTALLDKPVEATVTDPTNPYILAPQLLCAAVELPITLAEAE 479
Query: 691 KYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVID 750
+ + + L+ +GY+ P G + P ++IR + ++D
Sbjct: 480 ELSAESV---LEELELKGYVRKRP----HGWFITPDGQQLSPHGAVNIRGGTGVQVAIVD 532
Query: 751 MQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDY 810
+S +L ++ +A + GAV++HQG +++V EL+L + +AL ++ T R+
Sbjct: 533 GESGRMLGTVDGGRAPATAHPGAVHIHQGESFVVDELDLDAGLALVHAEQPEWNTSAREI 592
Query: 811 TDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPK 870
TDI ++ A + ++ Q VT G+ R SG + D++EL +P
Sbjct: 593 TDISIT----AVHESVDYGEVRVALVQ---VNVTHQVVGYLRRLL-SGEVLDSIELDMPA 644
Query: 871 YSYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNP 929
+ +++AV + P+ ++A F LHAA HA + ++P+ C+ D+
Sbjct: 645 QTLDTRAVMYTITPELLEASGVPYERFPGSLHAAEHAAIGLLPLVATCDRWDIGGVSTAL 704
Query: 930 HDSRYFPERILLYDRHPGGTGVSKQ 954
H P + +YD + GG G + +
Sbjct: 705 HPDTGLPT-VFVYDGYDGGAGFADR 728
>gi|320354277|ref|YP_004195616.1| DEAD/DEAH box helicase [Desulfobulbus propionicus DSM 2032]
gi|320122779|gb|ADW18325.1| DEAD/DEAH box helicase domain protein [Desulfobulbus propionicus
DSM 2032]
Length = 995
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 243/746 (32%), Positives = 382/746 (51%), Gaps = 75/746 (10%)
Query: 218 GQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVAT 277
G V ++A + + PD L+ + L+ ++ LY+HQ ++I LAG N VVAT
Sbjct: 29 GPQVVAHRVTAPREAVTLPPDMLMPALRQLLELRRMAGLYAHQHQAIGHILAGGNTVVAT 88
Query: 278 MTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASI----DI 333
T+SGKSL Y LPV + L H ++ ALY+FP KALAQDQL+ + + A++ +
Sbjct: 89 PTASGKSLIYTLPVFQTLLHYPAAKALYLFPLKALAQDQLKTVEQLWHLLPATLRGELPV 148
Query: 334 G-VYDGDTTQKDRMWLRD-NARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTE 391
G +YDGDT+ R +RD ++ITNPDMLH+S+LPYH +++ +NLR
Sbjct: 149 GAIYDGDTSGYRRKKIRDVPPPIMITNPDMLHLSLLPYHDRWAHFWANLR---------- 198
Query: 392 VYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPRE 451
+VVIDE H Y+G FG H A ++RRL R+C+ +YGS P F+ ++AT NP E
Sbjct: 199 ---------YVVIDEIHTYRGVFGSHVAWVIRRLKRICA-LYGSSPLFILASATIGNPGE 248
Query: 452 HCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPI 511
H L + E+ Q+ A+ +L N S
Sbjct: 249 HGRLLIDAPVTEITQSGAGSAARHTLLL-------------------------NPLESAA 283
Query: 512 SEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAED 571
+ + L + LR I +C+SRK+ EL+ +T + L+E I YR+G++ E+
Sbjct: 284 TSATRLLEAAISRELRTIVYCQSRKMTELITVWTEKRLKERK----GLIASYRSGFLPEE 339
Query: 572 RRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPS 631
RR IE G L GV +T+ALELGID+GH+D+ + +G+PGS+ + WQ+AGR GR+++ S
Sbjct: 340 RRGIEDRLASGSLLGVISTSALELGIDIGHLDLCILVGYPGSMMATWQRAGRVGRKQQES 399
Query: 632 LAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEK 691
L V + E LDQ+FM++PE F P+E + N + LVCAA E P S D
Sbjct: 400 LVVLIGHEDALDQHFMRHPEDFFSRPVEPVTMHVGNPHIAGPQLVCAAAEIPFSAT-DPL 458
Query: 692 YFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDM 751
+ + I L + +L SA + ++ P +++R + +++
Sbjct: 459 LATPEMRAMIERLTRQA------TLLQSADGNTWFSPQRYPQRHVNLRGGGTTLSILVNQ 512
Query: 752 QSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTK--TRD 809
++L I+ +A + + GA+Y+H TY V L+L L +A YFT+ T
Sbjct: 513 PRRQLLGIIDAHRALRECHPGAIYLHMARTYHVDSLDLEGGEILVTEAKPAYFTRVLTEK 572
Query: 810 YTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLP 869
T+I T+ Q+ T + VT G++R+ GS I + V L LP
Sbjct: 573 STEIMAI----IETTRCGAAQVRYGTLR-----VTERITGYHRIAHGSLRIINRVPLDLP 623
Query: 870 KYSYESQAVWIQVPQSVKAVVEQ-NFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPN 928
+E++ W+++P ++ E+ F G+HA HA++ ++P+ V C+ +DL
Sbjct: 624 PQRFETEGFWVEIPDWLQRRTEEAKLHFMGGIHALEHAMIGLMPLMVLCDRNDLGGISHP 683
Query: 929 PHDSRYFPERILLYDRHPGGTGVSKQ 954
HD P + +YD H GG G++ +
Sbjct: 684 WHDQVAGPA-VFVYDGHAGGMGLTAR 708
>gi|302520920|ref|ZP_07273262.1| ATP-dependent RNA helicase [Streptomyces sp. SPB78]
gi|302429815|gb|EFL01631.1| ATP-dependent RNA helicase [Streptomyces sp. SPB78]
Length = 825
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 252/767 (32%), Positives = 385/767 (50%), Gaps = 61/767 (7%)
Query: 199 SQLLPLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYS 258
+Q P +++ L G ++ H E + R A P + +A++ GI +S
Sbjct: 18 AQHSPRAVLDRLAGGSSRAERITHTEHLPPRPASYAVWPHQVRPEVIAAVQEAGIEHPWS 77
Query: 259 HQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL------SHDLSSSALYMFPTKAL 312
HQA + +L G++VVV+T T+SGKSL Y +PVL L + ++ALY+ PTKAL
Sbjct: 78 HQARAAEHALNGESVVVSTGTASGKSLGYLVPVLSTLLDGSEAPNGRGATALYLAPTKAL 137
Query: 313 AQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQ 372
A DQ RA+ + ++ VYDGDT ++R W+R A ++TNPDMLH ILP H +
Sbjct: 138 AADQRRAVRELAAPLGRAVRPAVYDGDTPVEEREWVRQYANYVLTNPDMLHRGILPSHPR 197
Query: 373 FSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHV 432
+S L L+ +VVIDE H Y+G FG H A +LRRL RLC+
Sbjct: 198 WSSFLRALK-------------------YVVIDECHVYRGVFGSHVAQVLRRLRRLCAR- 237
Query: 433 YGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNK 492
YGS+P F+ ++AT+A P L L E + DGSP + +F LW P
Sbjct: 238 YGSEPVFLLASATAAEPALAGQRLTGLPIAE-VAEDGSPRGEVVFALWEP---------- 286
Query: 493 SQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEET 552
T++ + A + ++ +E + L ++ G+R +AF RSR+ EL+ +E L +
Sbjct: 287 PLTELQGEKGAPVRRTA-TAETADLLTDLTLQGVRSVAFVRSRRGAELISVIAKERLADR 345
Query: 553 APHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPG 612
L + YR GY+AE+RR +ER G+L G+AAT ALELG+DV +D L G+PG
Sbjct: 346 DRSLASRVAAYRGGYLAEERRALERALHSGELLGLAATTALELGVDVAGLDAVLIAGYPG 405
Query: 613 SIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLE 672
+ ASLWQQAGR+GR + +LAV VA + PLD + + +PE +F P+E +D N VL
Sbjct: 406 TRASLWQQAGRAGRTGQGALAVLVARDDPLDTFLVHHPEAIFDQPVESTVLDPDNPYVLA 465
Query: 673 QHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMP 732
HL AA E PL+ D FG + + L+ L + Y ++
Sbjct: 466 PHLCAAAAELPLT-GQDRDLFGPATAELLPQLEAAKLLRRR-------GLSWYWTRKERA 517
Query: 733 SHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSK 792
+ IR ++++ + +L ++ S + V+EGAV++HQG TY V+ +L +
Sbjct: 518 ADLTDIRGEGGPPVQIVEEGTGRLLGTVDASASHTTVHEGAVHLHQGRTYQVRTFDLDAN 577
Query: 793 IALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQAL---ACTVTTTWFG 849
+AL ++A Y T RD T + V + D+ L + VT
Sbjct: 578 VALVEEASPPYTTVARDTTSVSV----------LETDRSIPWGEGRLCFGSVEVTHQVVS 627
Query: 850 FYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQ-SVKAVVEQNFSFRSGLHAASHALL 908
+ R +G + +L LP ++AVW V + + A V LHAA HA +
Sbjct: 628 YLRRRLLTGEVLGETKLDLPPRHLRTRAVWWTVTEDQLDAAVVHPQQLGGALHAAEHASI 687
Query: 909 HVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
++P++ C+ D+ H P + +YD HPGG G +++
Sbjct: 688 GLLPLFATCDRWDIGGVSVPLHPDTLLPT-VFVYDGHPGGAGFAERA 733
>gi|295837420|ref|ZP_06824353.1| ATP-dependent RNA helicase [Streptomyces sp. SPB74]
gi|295826518|gb|EDY42997.2| ATP-dependent RNA helicase [Streptomyces sp. SPB74]
Length = 852
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 256/773 (33%), Positives = 387/773 (50%), Gaps = 73/773 (9%)
Query: 199 SQLLPLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYS 258
+Q P +++ L G ++ H E + R A P + +A++ GI +S
Sbjct: 43 AQHSPRAVLDRLAGGSSRAERITHTEHLPPRPASYAVWPHQVRPEVIAAVQEAGIEHPWS 102
Query: 259 HQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL------SHDLSSSALYMFPTKAL 312
HQA + +L G++VVV+T T+SGKSL Y +PVL L + ++ALY+ PTKAL
Sbjct: 103 HQARAAEHALNGESVVVSTGTASGKSLGYLVPVLSTLLDGSEAPNGRGATALYLSPTKAL 162
Query: 313 AQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQ 372
A DQ RA+ A+ ++ VYDGDT ++R W+R A ++TNPDMLH +LP H +
Sbjct: 163 AADQRRAVRALAAPLGRAVRPAVYDGDTPVEEREWVRQYANYVLTNPDMLHRGVLPSHPR 222
Query: 373 FSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHV 432
+S L L+ +VVIDE H Y+G FG H A +LRRL RLC+
Sbjct: 223 WSSFLRALK-------------------YVVIDECHVYRGVFGSHVAQVLRRLRRLCAR- 262
Query: 433 YGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNK 492
YGS+P F+ ++AT+A P L L E + DGSP + +F LW P
Sbjct: 263 YGSEPVFLLASATAAEPALAGQRLTGLPVAE-VTEDGSPRGEVVFALWEP---------- 311
Query: 493 SQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEET 552
T++ + A + ++ +E + L ++ G+R +AF RSR+ EL+ +E L E
Sbjct: 312 PLTELQGEKGAPVRRTA-TAESADLLTDLTLQGVRSVAFVRSRRGAELISVIAKERLAER 370
Query: 553 APHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPG 612
L + YR GY+AE+RR +ER G+L G+AAT ALELG+DV +D L G+PG
Sbjct: 371 DRSLASRVAAYRGGYLAEERRALERALHSGELLGLAATTALELGVDVAGLDAVLIAGYPG 430
Query: 613 SIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLE 672
+ ASLWQQAGR+GR + +LAV VA + PLD + + +PE +F P+E +D N VL
Sbjct: 431 TRASLWQQAGRAGRTGQGALAVLVARDDPLDTFLVHHPEAIFDQPVESTVLDPDNPYVLA 490
Query: 673 QHLVCAALEHPLSLIYDEKYFGSGLS------SGITTLKNRGYLSSDPSLDSSAKIFEYI 726
HL AA E PL+ D FG + G L+ RG PS Y
Sbjct: 491 PHLCAAAAELPLTE-RDRDLFGPATAELLPQLEGARLLRRRG-----PSW--------YW 536
Query: 727 GHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKE 786
++ + IR ++++ + +L ++ S + V+EGAV++HQG TY V+
Sbjct: 537 TRKERAADLTDIRGEGGPPVQIVEDGTGRLLGTVDASASHSTVHEGAVHLHQGRTYQVRA 596
Query: 787 LNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQAL---ACTV 843
+L + +AL +A Y T RD T + V + D+ L + V
Sbjct: 597 FDLEANVALVTEASPPYTTVARDTTSVSV----------LETDRSIPWGEGRLCFGSVEV 646
Query: 844 TTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQ-SVKAVVEQNFSFRSGLHA 902
T + R +G + +L LP ++AVW V + + A + LHA
Sbjct: 647 THQVVSYLRRRLLTGEVLGETKLDLPPRHLRTRAVWWTVTEDQLDAALIHPEQLGGALHA 706
Query: 903 ASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
A HA + ++P++ C+ D+ H P + +YD HPGG G +++
Sbjct: 707 AEHASIGLLPLFATCDRWDIGGVSVPLHPDTLLPT-VFVYDGHPGGAGFAERA 758
>gi|421871675|ref|ZP_16303296.1| DEAD/DEAH box helicase family protein [Brevibacillus laterosporus
GI-9]
gi|372459559|emb|CCF12845.1| DEAD/DEAH box helicase family protein [Brevibacillus laterosporus
GI-9]
Length = 760
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 253/760 (33%), Positives = 393/760 (51%), Gaps = 71/760 (9%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E++E R + +V+ I R +V P+ + + AL GIS LY HQA +
Sbjct: 9 ELLEEFRSDERMKQNIVNWTTIPPRDPQVVPFPEQIDERIAQALSRRGISSLYIHQATAF 68
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
GK++V T T+SGKS+CY+LP+L+ L++D + ALYMFPTKALAQDQ L +
Sbjct: 69 RHIQDGKHIVAVTPTASGKSMCYHLPILQTLANDAQARALYMFPTKALAQDQKSELHELI 128
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
SI YDGDT R +R ++ITNPDMLH +ILP+H ++ +A
Sbjct: 129 NDMGLSIKSETYDGDTPAAIRQMVRKAGNIVITNPDMLHSAILPHHTKW---------VA 179
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
F F +++VVIDE H Y+G FG H A ++RRL R+C++ YGS P F+ ++A
Sbjct: 180 F----------FEHLKYVVIDELHTYRGVFGSHVANVIRRLKRICAY-YGSHPQFICTSA 228
Query: 445 TSANPREHCMELANLSTLE---LIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTR 501
T ANP ++LA T E L+ N+G+P K F+ +NP + LN ++ + R
Sbjct: 229 TIANP----VQLAEQITEEQMVLVDNNGAPAGTKHFIFYNP-PIVNHQLNIRRSATLEAR 283
Query: 502 NAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREIL-EETAPHLVDSI 560
+ A+ + +G++ I F RSR E++L+Y +E++ ++ P +
Sbjct: 284 DIAST--------------FLTNGVQTILFARSRVRVEILLTYLQELIRKKLGPKTIQG- 328
Query: 561 CVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQ 620
YR GY+ RR+IER G + GV +TNALELG+D+G + + G+PGS+AS WQQ
Sbjct: 329 --YRGGYLPTQRRQIERGLRQGDIVGVVSTNALELGVDIGQLQACVITGYPGSVASTWQQ 386
Query: 621 AGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAAL 680
AGR+GRR+ S+ V V PLDQY + +PE F+ E I+ N +L H+ CAA
Sbjct: 387 AGRAGRRQDESVVVMVGSSSPLDQYIILHPEYFFERNPESARINPDNLIILVDHMKCAAY 446
Query: 681 EHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRA 740
E P + FG + I +L+ + L S + ++ ++ P+H IS+R+
Sbjct: 447 ELPFT---TGDTFGQAEIAEILE-----FLTEEQILHFSKGKWFWM-NDSFPAHNISLRS 497
Query: 741 IESERYEVIDMQ---SNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQ 797
E ++D+ +V+ E++ + ++E A+Y+HQG Y V++L+ K A +
Sbjct: 498 ASQENVVIVDITERGQEKVIGEMDRFSSMTLLHEEAIYLHQGVQYQVEKLDYEEKKAYIR 557
Query: 798 KADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGS 857
+ + Y+T + V + A ++ + A+A F + GS
Sbjct: 558 EVKVDYYTDANVAVQLKVLESDFARKQNETELAYGEVAVNAMATIFKKIKFETHENI-GS 616
Query: 858 GIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRC 917
G I +LP+ + A WI P+S+ + Q GL A H L HV P++V C
Sbjct: 617 GPI------HLPEEELHTNAAWISFPESILQTIGQE-EVELGLVGAGHVLQHVAPLWVMC 669
Query: 918 NFSDL--APECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
+ DL + H ++ I YDR+PGG G+S+QV
Sbjct: 670 DPKDLHVISQRKAVHSNQ---PTIFFYDRYPGGIGLSEQV 706
>gi|357400448|ref|YP_004912373.1| ATP-dependent RNA helicase [Streptomyces cattleya NRRL 8057 = DSM
46488]
gi|386356499|ref|YP_006054745.1| ATP-dependent RNA helicase [Streptomyces cattleya NRRL 8057 = DSM
46488]
gi|337766857|emb|CCB75568.1| ATP-dependent RNA helicase [Streptomyces cattleya NRRL 8057 = DSM
46488]
gi|365807007|gb|AEW95223.1| ATP-dependent RNA helicase [Streptomyces cattleya NRRL 8057 = DSM
46488]
Length = 776
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 252/754 (33%), Positives = 374/754 (49%), Gaps = 89/754 (11%)
Query: 247 ALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL----------- 295
A++ GI + + HQA ++ G++VVVAT T+SGKSL Y PVL AL
Sbjct: 4 AIRVAGIVRPWEHQARVAAHAVRGESVVVATGTASGKSLAYLAPVLSALLDGADEAAGAG 63
Query: 296 ---------------------SHDLS---SSALYMFPTKALAQDQLRALLAMTKAFDASI 331
+ D ++ALY+ PTKALA DQ RA+ A+ ++
Sbjct: 64 GTPAAGATGTGARGPTRRGGAARDPGIRGATALYLAPTKALAADQRRAVSALAAPLGTAV 123
Query: 332 DIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTE 391
V+DGDT ++R W R A L+TNPDMLH ILP H ++S L LR
Sbjct: 124 RAAVHDGDTPYEEREWARQYANYLLTNPDMLHRGILPGHARWSSFLRRLR---------- 173
Query: 392 VYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPRE 451
+VVIDE H Y+G FG H A ++RRL R+C+ YG+DP F+ ++AT A+P +
Sbjct: 174 ---------YVVIDECHTYRGVFGSHVAQVVRRLRRVCAR-YGADPVFLLASATVADPAQ 223
Query: 452 HCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPI 511
L + E + D SP + +F LW P T++ R A + ++
Sbjct: 224 AASRLTGVPVTE-VTEDASPRGELVFALWEP----------PLTELSGERGAPVRRTA-T 271
Query: 512 SEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAED 571
+E + L ++V G R +AF RSR+ EL+ ++ L E L + YR GY+ E+
Sbjct: 272 AESAELLTDLVVQGTRTVAFVRSRRAAELIALLAQDRLAEVDRSLPSRVGAYRGGYLPEE 331
Query: 572 RRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPS 631
RR IE D G+L G+A+T ALELG+DV +D L G+PG+ ASLWQQAGR+GR + +
Sbjct: 332 RRAIEADLHSGRLLGLASTTALELGVDVSGLDAVLLAGYPGTRASLWQQAGRAGRAGQGA 391
Query: 632 LAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEK 691
LAV VA + PLD Y + +PE LF P+E +D N VL HL AA E PL+ D
Sbjct: 392 LAVLVARDDPLDTYLVHHPEALFARPVESTVLDPDNPYVLAPHLCAAAAEIPLT-DADLA 450
Query: 692 YFGSGLSSGITTLKNRGYLS---------SDPSLDSSAKIFEYIGHEKMPSHTISIRAIE 742
FG + + L+ RG L ++ + + + E+ T IR
Sbjct: 451 LFGPEAAGLVPQLEKRGLLRRRPLPPPSRAEQAAAGPREALFWTRRERAADLT-DIRGEG 509
Query: 743 SERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLK 802
+V++ + +L ++ S A V+EGAV++HQG TYLV+ L+L +AL ++AD
Sbjct: 510 GRPVQVVEADTGRLLGTVDASAAHATVHEGAVHLHQGRTYLVRRLDLDDDVALVEEADPP 569
Query: 803 YFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFD 862
Y T RD T I + + D+L + + VT + R +G +
Sbjct: 570 YSTMARDTTAITIL--DTETERPWGPDRLCFGSVE-----VTHQVVSYLRRKLITGEVLG 622
Query: 863 TVELYLPKYSYESQAVWIQVP--QSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFS 920
L LP + ++AVW + Q +A + LHAA HA + ++P++ C+
Sbjct: 623 ETRLDLPPQTLRTRAVWWSLTDDQLDEARIHPE-ELPGALHAAEHASIGILPLFATCDRW 681
Query: 921 DLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
D+ H P + +YD HPGG G +++
Sbjct: 682 DIGGVSFPLHPDTGLPT-VFVYDGHPGGAGFAER 714
>gi|295395536|ref|ZP_06805730.1| DEAD/DEAH box family ATP-dependent RNA helicase [Brevibacterium
mcbrellneri ATCC 49030]
gi|294971555|gb|EFG47436.1| DEAD/DEAH box family ATP-dependent RNA helicase [Brevibacterium
mcbrellneri ATCC 49030]
Length = 759
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 248/746 (33%), Positives = 369/746 (49%), Gaps = 66/746 (8%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATM 278
++ H AR+A + P+ + A + TGI + + HQ E+ +VV+AT
Sbjct: 15 RVTHARSFPAREAQFADWPEWVSPEVVHAWQVTGIERPWRHQVEAAQRVWKNDDVVIATG 74
Query: 279 TSSGKSLCYNLPVLEALSHDLSS------SALYMFPTKALAQDQLRALLAMTKAFDASID 332
T+SGKSL + LPV +A + + LY+ PTKAL DQL L+++ +
Sbjct: 75 TASGKSLGFWLPVTQAAFESRGALPTKVATTLYISPTKALGHDQLSKLVSLPLQ---GVR 131
Query: 333 IGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEV 392
G +DGDT++ DR W+R + ++ TNPDMLH SILP H +F R NLR
Sbjct: 132 AGSFDGDTSEADRQWVRQHGNIIFTNPDMLHRSILPGHERFRRWFKNLR----------- 180
Query: 393 YLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREH 452
FVV+DEAH Y+G FG H AL+LRRL R+ + +YG+ P V ++AT A+P
Sbjct: 181 --------FVVVDEAHRYRGVFGSHVALVLRRLLRVAA-LYGARPVVVGASATMADPAGA 231
Query: 453 CMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPIS 512
+ + D SP A F+LW P + T IS
Sbjct: 232 FGRFTGREAYAVTE-DTSPKAAGTFLLWEPPLVAGEEAQRRST---------------IS 275
Query: 513 EVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDR 572
E + + + G+R IAF SR E + R + AP L S+ YR GY+ E+R
Sbjct: 276 EATSMLVDTTCAGVRSIAFIASRAGAEALADSVRSQVGRIAPELTTSVAAYRGGYLPEER 335
Query: 573 RRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSL 632
R +E GGKL VA+TNALELGID+ +DV + G+PG++ASLWQQAGR+GR + L
Sbjct: 336 RALETGLRGGKLRTVASTNALELGIDISGLDVVVIAGWPGTLASLWQQAGRAGRAGQEWL 395
Query: 633 AVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKY 692
AV +A + PLD Y + PE +F +P+E I +N V+ HL+ AA E PL+ +
Sbjct: 396 AVLIARDDPLDTYVVHNPEHVFDAPVEAGVIHPENPYVVAGHLLAAAAEEPLTEDDGRLW 455
Query: 693 FGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQ 752
FG L YL + P+ AK + + IR + ++D
Sbjct: 456 FGERAVEVARELAEAKYLRARPTGWFWAKA-------ESAAALTDIRGSGGAQVRLVDQA 508
Query: 753 SNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTD 812
+ +L ++++ A Q + GAVY+HQG T+ V EL+L+ ++AL A + Y T+ R T+
Sbjct: 509 TGMLLGTVDDAAAPRQSFPGAVYVHQGETFSVLELDLAERVALVAPATVDYTTQARSVTE 568
Query: 813 IHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYS 872
I V G T+ S+ + A VTT G+ G+G++ L LP +
Sbjct: 569 IRVVG------TEGSRGLPSGCRVFHGAVEVTTQVTGYIMRQNGTGVVLGERPLDLPTQT 622
Query: 873 YESQAVWIQVPQSV---KAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNP 929
+ AVW P SV VV + +HAA HA + ++P++ C+ D+
Sbjct: 623 LRTHAVWWTAPDSVVEDAEVVPGDLP--GAVHAAEHASIGLLPLFAGCDRWDIGGVSTAR 680
Query: 930 H-DSRYFPERILLYDRHPGGTGVSKQ 954
H D+ + +YD GG G +++
Sbjct: 681 HVDTGQ--ATVFVYDGQSGGAGFAER 704
>gi|418046513|ref|ZP_12684601.1| helicase/secretion neighborhood putative DEAH-box helicase
[Mycobacterium rhodesiae JS60]
gi|353192183|gb|EHB57687.1| helicase/secretion neighborhood putative DEAH-box helicase
[Mycobacterium rhodesiae JS60]
Length = 775
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 252/740 (34%), Positives = 384/740 (51%), Gaps = 58/740 (7%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
H+ ++ AR+A + P + A GI + +SHQ + + A +VV++T T+S
Sbjct: 25 HMAELPARQAQSADWPAWADPDVLRAFHDHGIERPWSHQVRAADLAHASHHVVISTGTAS 84
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGV--YDGD 339
GKSL + LP+++ L+ D + ALY+ PTKAL DQLR ++T A A D+ YDGD
Sbjct: 85 GKSLAFQLPIMDVLARDPRARALYLSPTKALGHDQLRTAHSLTTAVTALADVAPTSYDGD 144
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T + R + R+ +R L +NPDM+H+S+L H +++ L LR
Sbjct: 145 TPVEIRRFARERSRWLFSNPDMIHLSLLRNHARWAVFLRGLR------------------ 186
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLC---SHVYGSDPSFVFSTATSANPREHCMEL 456
++V+DE H Y+G FG + A++LRRL RLC + P+ +F++AT+A P E EL
Sbjct: 187 -YLVVDECHYYRGIFGSNVAMVLRRLLRLCERYAPASAPGPTVIFASATTAAPGETAAEL 245
Query: 457 ANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSY 516
+ + DGSP + LW P + +TD+ N A S SE +
Sbjct: 246 IG-HPVAAVTEDGSPHGARTVALWEP---------ELRTDLLG-ENGAPVRHSAGSEAAR 294
Query: 517 LFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIE 576
+ A++V G R + F RSR+ EL R LE AP LVD++ YRAGY+AEDRR +E
Sbjct: 295 MMADLVAEGARTLTFVRSRRGAELTALGARARLEHIAPALVDTVASYRAGYLAEDRRELE 354
Query: 577 RDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYV 636
R G+L G+A TNALELGID+ +D L GFPG++AS WQQAGRSGRR + +L V +
Sbjct: 355 RALSDGELRGLATTNALELGIDIAGLDAVLLAGFPGTVASFWQQAGRSGRRGQGALVVLI 414
Query: 637 AFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSG 696
A + PLD Y + +PE L P+E ID N VL L+CAA E PL ++
Sbjct: 415 ARDDPLDTYLVHHPEALLDKPVERVVIDPANPYVLGPQLLCAATELPLDEAEVRRWEAES 474
Query: 697 LSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEV 756
++ T L + G L K F G + P+ + IR + +++ + +
Sbjct: 475 VA---TELVDDGLLRR-----RGGKYFPAAGLDPHPA--VDIRGSAGGQIAIVEAGTGRM 524
Query: 757 LEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVS 816
L + ++A V+ GAVY+HQG +Y+V+ L+ +A D Y T R+ TDI ++
Sbjct: 525 LGSVGVAQAPATVHPGAVYLHQGESYVVESLSFEDGVAFVHVEDPGYTTFAREITDIEIT 584
Query: 817 GGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRG-SGIIFDTVELYLPKYSYES 875
G ++ D +T + +V G+ R RG SG + D EL +P++S +
Sbjct: 585 GTGE----RMHYDAVTLGL---VPVSVRHRVIGYLR--RGLSGEVIDFFELDMPEHSLPT 635
Query: 876 QAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRY 934
AV + P+++ + LHAA HA + ++P+ C+ D+ S
Sbjct: 636 TAVMYTITPEALSDSGIELLRVPGALHAAEHAAIGLLPLVASCDRGDIG-GLSTATGSDG 694
Query: 935 FPERILLYDRHPGGTGVSKQ 954
P + +YD HPGG G +++
Sbjct: 695 LPT-VFVYDGHPGGAGFAER 713
>gi|330465247|ref|YP_004402990.1| hypothetical protein VAB18032_06330 [Verrucosispora maris
AB-18-032]
gi|328808218|gb|AEB42390.1| hypothetical protein VAB18032_06330 [Verrucosispora maris
AB-18-032]
Length = 815
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 254/761 (33%), Positives = 366/761 (48%), Gaps = 71/761 (9%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+ HVE + +R P + ++A G+S + HQAE+ + ++VVVAT T
Sbjct: 41 VTHVERVPSRAGTPAPWPGWAPEELRTAYARRGVSAPWRHQAEAAELAHDRRHVVVATGT 100
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGD 339
+SGKSL Y LP L L D ++ LY+ PTKALA DQLRA+ + + YDGD
Sbjct: 101 ASGKSLAYQLPALATLLADARATVLYLAPTKALAADQLRAVAELEI---EGVRPACYDGD 157
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T + +R W+R ++R ++TNPDMLH ILP H Q+S L L
Sbjct: 158 TPRAEREWIRRHSRFVLTNPDMLHHGILPGHAQWSGFLRRL------------------- 198
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYG--SDPSFVFSTATSANPREHCMELA 457
R+VVIDE H Y+G FG H + +LRRL R C+ YG + P+FV ++ATS +P L
Sbjct: 199 RYVVIDECHVYRGVFGSHVSHVLRRLRRQCAR-YGNTAGPTFVLASATSGDPAATAGRLV 257
Query: 458 NLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDD----TRNAANKTSSP--- 510
L + + D SP A F LW P S T +A T+ P
Sbjct: 258 GLP-VTAVTEDTSPRAGVTFALWEPPLLPAEASASSPTTAAPAPRRAPDAPRPTAPPGPD 316
Query: 511 -------------ISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLV 557
+ E + L A+ V G+R +AF RSR+ E+V + R L+E P L
Sbjct: 317 AEPGDLTQVRRSALRETADLLADSVAAGVRTLAFVRSRRGAEVVATSARRSLDEAVPGLG 376
Query: 558 DSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASL 617
D + YR GY+ E+RR +ER G L G+A+TNALELG+D+ +D L G+PG+ ASL
Sbjct: 377 DRVAAYRGGYLREERRALERALLHGDLLGLASTNALELGVDLVGLDAVLICGYPGTRASL 436
Query: 618 WQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVC 677
WQQAGR+GR + +LAV VA + PLD Y + +PE LF +P+E +D N VL L C
Sbjct: 437 WQQAGRAGRSGQEALAVLVARDDPLDTYLVHHPEALFGTPVEATVLDPANPYVLGPQLAC 496
Query: 678 AALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTIS 737
AA E D + FG + L G L P+ Y H + P +
Sbjct: 497 AAAEA-PLTAADLELFGDSAKETVEALVEAGALRQRPT-------GWYWRHRERPE--VD 546
Query: 738 IRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQ 797
+R V++ + +L ++ + F ++ GAVY+HQG +Y+V L+L AL
Sbjct: 547 LRGEGGAPVCVVEAATGRLLGTVDGGSSHFLLHPGAVYLHQGVSYVVDSLDLEDGCALVH 606
Query: 798 KADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQAL---ACTVTTTWFGFYRLW 854
+ + T RD T + V +S L VT+ + R
Sbjct: 607 PEEPDWSTHARDVTSLSV----------VSVRSYVDAGPVGLFLGEVDVTSQVVSYQRRR 656
Query: 855 RGSGIIFDTVELYLPKYSYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPI 913
+G + DT L LP + AVW + P+S+ LHAA HA + ++P+
Sbjct: 657 IATGEVIDTRPLDLPTRELRTVAVWFTLSPESLAEAGVDPADVPGALHAAEHAAIGLLPL 716
Query: 914 YVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
C+ D+ H P + +YD HPGG G +++
Sbjct: 717 LATCDRWDIGGLSTAVHPDTEAPT-VFVYDGHPGGAGFAER 756
>gi|432332195|ref|YP_007250338.1| helicase family protein with metal-binding cysteine cluster
[Methanoregula formicicum SMSP]
gi|432138904|gb|AGB03831.1| helicase family protein with metal-binding cysteine cluster
[Methanoregula formicicum SMSP]
Length = 773
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 246/710 (34%), Positives = 377/710 (53%), Gaps = 61/710 (8%)
Query: 246 SALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALY 305
S L GI +LYSHQ E+I + AG+NV++ T T+SGK+L +N+PV L D + ALY
Sbjct: 46 SYLDQRGI-RLYSHQCETINHARAGQNVILTTATASGKTLAFNVPVFCHLEQDPDARALY 104
Query: 306 MFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMS 365
++PTKALA DQL +L M + + VYDGDT Q R +R+++R++I+NP +H
Sbjct: 105 LYPTKALANDQLLSLEEMAQYTGIAARPAVYDGDTPQSKRAAIREHSRVIISNPHEMH-H 163
Query: 366 ILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRL 425
+L +H ++ LSNL ++VIDEAH Y+G FG H A ++RRL
Sbjct: 164 VLSWHAKWQPFLSNLD-------------------YIVIDEAHRYRGVFGSHIAFVIRRL 204
Query: 426 CRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSC 485
RLC H YG+ P F+ STAT ANP E L L+ DG+P ++ FVL+NP
Sbjct: 205 LRLCRH-YGASPQFILSTATLANPLEFAKALTG-QDFVLVDTDGAPHGRRNFVLFNPFY- 261
Query: 486 LRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYT 545
D R+ +T L V+ L+ + F SRK+ ELV ++
Sbjct: 262 ----------DGISERSLHQETKD-------LLVSCVEEDLQTLCFTGSRKMAELVTVWS 304
Query: 546 REILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVT 605
R+ + + L D+I VYRAGY+ E+RR IE+ G+L GV +TNALELGIDVG +D
Sbjct: 305 RDDVRRISQKLADTISVYRAGYLPEERRAIEQQLKEGRLRGVVSTNALELGIDVGSLDAV 364
Query: 606 LHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDA 665
+ G+PG++ S QQAGR+GR+ SLAV +A PLDQYFM +P++ F E ID
Sbjct: 365 IISGYPGTMMSTRQQAGRAGRKGGESLAVLIAQANPLDQYFMHHPDQFFSRSHELAIIDT 424
Query: 666 QNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEY 725
N ++ HL+CAA E PL D +FG LS + L G L + + + Y
Sbjct: 425 NNPYIVSGHLLCAAAEIPLLEDRDSAFFGETLSCLLPDLGAAGLLR------KTIRGWVY 478
Query: 726 IGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVK 785
G + + + + + E + V M +LE ++ +A+ + ++GA+ +HQG TY+V
Sbjct: 479 AGRGRA-ADAVRLDGVPGESFRV--MCHGRLLETMDRGQAYREAHKGAIMLHQGETYVVS 535
Query: 786 ELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTT 845
E++L + + D+ Y+T+ + DI + G + + T VT
Sbjct: 536 EMDLETHTIRVTETDVDYYTQPQKEVDISIIG-------TLETRTVNNTPCFFGEVEVTE 588
Query: 846 TWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQN-FSFRSGLHAAS 904
+ G Y++ RG II L LP ++ ++A W +SV+ + ++ GLH
Sbjct: 589 QYTG-YKIKRGDTII-GLEPLTLPPLTFRTKAFWFIPQESVEQTITKSGGDLGGGLHGVE 646
Query: 905 HALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
HA++ ++P+YV C+ D+ +P + +YD + GG G++++
Sbjct: 647 HAIIALMPLYVMCDRWDIG-GLSSPSFGEKGEPVVFVYDGYEGGIGLAEK 695
>gi|145221983|ref|YP_001132661.1| DEAD/DEAH box helicase [Mycobacterium gilvum PYR-GCK]
gi|145214469|gb|ABP43873.1| DEAD/DEAH box helicase domain protein [Mycobacterium gilvum
PYR-GCK]
Length = 781
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 251/747 (33%), Positives = 376/747 (50%), Gaps = 70/747 (9%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
HV D+ R+A P + A GI L+SHQ + + G++VV++T T+S
Sbjct: 29 HVADLPPRRATSHPWPPWADPDVVQAFHDQGIRSLWSHQLAAADLAHDGRHVVLSTGTAS 88
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGV--YDGD 339
GKSL Y LP+ L + S LY+ PTKAL DQLRA A+T + D+ YDGD
Sbjct: 89 GKSLAYQLPIATELKRNPRSRVLYLSPTKALGHDQLRAAAALTASVPGLDDVAPTPYDGD 148
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
+ + R + R+ +R + +NPDM+H+S+L H +++ L NLR
Sbjct: 149 SPSEVRRFARERSRWIFSNPDMIHLSLLRNHARWAVFLRNLR------------------ 190
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYG----SDPSFVFSTATSANPREHCME 455
+VV+DE H Y+G FG + A++LRRL RLC+ S P+ VF++AT+A P E
Sbjct: 191 -YVVVDECHYYRGIFGSNVAMVLRRLLRLCARYAPAGDVSGPTVVFASATTAQPAITASE 249
Query: 456 LANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVS 515
L + E+ + DGSP + LW P + + +L + N A S +E +
Sbjct: 250 LIGQTVAEVTE-DGSPQGARTIALWEP-ALIPDLLGE---------NGAPVRRSAGAEAA 298
Query: 516 YLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRI 575
+ A+++ G R + F RSR+ EL R L +TAP L D + YRAGY+AEDRRR+
Sbjct: 299 RVMADLIAEGARTLTFVRSRRGAELAALGARTRLADTAPDLADQVASYRAGYLAEDRRRL 358
Query: 576 ERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVY 635
ER G+L G+A TNALELG+D+ +D + GFPG++AS WQQAGR+GRR + +L V
Sbjct: 359 ERALADGELRGMATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRAGRRGQGALVVL 418
Query: 636 VAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLS----LIYDEK 691
+A + PLD Y + +P L PIE ID N VL L+CAA E PL+ ++D +
Sbjct: 419 IARDDPLDTYLVHHPAALLDKPIERVVIDPANPYVLGPQLLCAATELPLTEAEVRMWDAE 478
Query: 692 YFGSGL-SSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVID 750
+GL G+ + G+ + P LD P + IR + +++
Sbjct: 479 SVAAGLVDDGLLRRRPSGFFPA-PGLD--------------PHPAVDIRGSTGGQIAILE 523
Query: 751 MQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDY 810
+ +L +A V+ GAVY+HQG +Y+V L+ IA D Y T R+
Sbjct: 524 DGTGRMLGSTGAGQAPASVHPGAVYLHQGESYVVDSLDFEDGIAFVHAEDPGYTTFAREV 583
Query: 811 TDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPK 870
TDI V+G + T + +VT T G+ R R G + D +EL +P
Sbjct: 584 TDISVTGAGE-------RSGHGPVTVGLVPVSVTNTVTGYLRR-RLDGEVIDFIELDMPT 635
Query: 871 YSYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLA--PECP 927
+ + A + P++++ LHAA HA + ++P+ C+ D+
Sbjct: 636 RTLNTMAAMCTITPEALQDAGIDPLRIPGALHAAEHAAIGLLPLMASCDRGDIGGVSTAV 695
Query: 928 NPHDSRYFPERILLYDRHPGGTGVSKQ 954
P D P I +YD +PGG G + +
Sbjct: 696 GPVDG--LPT-IFVYDGYPGGAGFAAR 719
>gi|227502479|ref|ZP_03932528.1| possible ATP-dependent helicase [Corynebacterium accolens ATCC
49725]
gi|227076848|gb|EEI14811.1| possible ATP-dependent helicase [Corynebacterium accolens ATCC
49725]
Length = 790
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 249/742 (33%), Positives = 382/742 (51%), Gaps = 59/742 (7%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
+ A++A + P+ +L K + GI KLY+HQAE + G++ V++T TSSGKSL
Sbjct: 33 LPAKRARYADWPEWVLPGLKEKVVDGGIGKLYAHQAELAECAWQGRDAVISTGTSSGKSL 92
Query: 286 CYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDI--GVYDGDTTQK 343
Y LP+L L+ D ++ ALY+ PTKAL DQL++ L + + ++ YDGDT Q+
Sbjct: 93 GYQLPILTRLAEDQTACALYLTPTKALGSDQLQSALELCRGIPELKNVVPAPYDGDTPQE 152
Query: 344 DRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVV 403
R +RD++RL+ +NPDM+HMS+L H +++R+L +L F+V
Sbjct: 153 SRTGVRDHSRLVFSNPDMVHMSMLAAHARWARVLRHLE-------------------FIV 193
Query: 404 IDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLE 463
IDE H+Y+G FG + AL+LRRL RLC H YGS P+ ++++AT +P H L
Sbjct: 194 IDECHSYRGVFGANVALVLRRLLRLCRH-YGSRPTIIYASATMNDPARHAERLTGRPA-H 251
Query: 464 LIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQ 523
I D +P + LW P L ++ + + A + +E + + A +
Sbjct: 252 AITEDSAPTGARTVALWEP-----GFLEGAEGE-----HGAPVRRAATTESAEMMATFIA 301
Query: 524 HGLRCIAFCRSRKLCELVLSYTREILEET--APHLVDSICVYRAGYVAEDRRRIERDFFG 581
G R + F RSR+ E+V E L + P I YRAGY+AEDRRR+E+
Sbjct: 302 EGARTMTFVRSRRSAEVVAMVAAETLSGSLGRPDFAQRIAAYRAGYLAEDRRRLEQALDD 361
Query: 582 GKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGP 641
L GVA T+ALELGIDVG +D + GFPG++AS WQQAGR+GRR + SL V VA + P
Sbjct: 362 ASLLGVATTSALELGIDVGGLDAVVTAGFPGTVASFWQQAGRAGRRGQGSLVVLVARDEP 421
Query: 642 LDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGL---- 697
+D Y + +P+ L P+E + N +L H+ CAA+E PL ++ S +
Sbjct: 422 MDTYLVHHPDALLGKPVEASVFNPTNPYILFGHIYCAAVEKPLDDATIAEWGASEVIHQL 481
Query: 698 -SSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEV 756
G+ + RG+ ++ A I E + E S +S+R E ++D +
Sbjct: 482 AEQGLVRRRERGWF----AVPIPASIAEELSPETAHS-AVSLRGGAGEEVMIVDASDGRL 536
Query: 757 LEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVS 816
L I+ ++A QV+ GAVY+HQG +++++EL LS +AL + +Y T R TDI +
Sbjct: 537 LGTIDAARATSQVHPGAVYLHQGESFVIEELILSDYVALARPETPEYSTTPRSTTDIRIV 596
Query: 817 GGNNAYATKISKDQLTKTTAQALACTV---TTTWFGFYRLWRGSGIIFDTVELYLPKYSY 873
D L + V T Y++ G I D + L LP+
Sbjct: 597 ---------READNLVNYSPGLWVADVEVEVTDRVTGYQVRLADGTIGDDIPLDLPEQRL 647
Query: 874 ESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDS 932
++AV + P ++ A+ LHAA HA + ++P+ C+ D+ H
Sbjct: 648 TTRAVAYTIDPLALSAMGITAADIPGTLHAAEHAAIGLLPLIATCDRWDIGGVSTALHAD 707
Query: 933 RYFPERILLYDRHPGGTGVSKQ 954
P + +YD HPGG G +++
Sbjct: 708 TQLPT-VFVYDGHPGGAGFAEE 728
>gi|403744730|ref|ZP_10953881.1| DEAD/DEAH box helicase domain-containing protein [Alicyclobacillus
hesperidum URH17-3-68]
gi|403121908|gb|EJY56167.1| DEAD/DEAH box helicase domain-containing protein [Alicyclobacillus
hesperidum URH17-3-68]
Length = 758
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 263/766 (34%), Positives = 381/766 (49%), Gaps = 86/766 (11%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
+++E R+ Q+ + AR EIP AL ++ K AL + GI +LYSHQAE
Sbjct: 5 QVLEEWRRDEAFAAQVAAWDVAPARLGRFREIPKALHEDVKQALIARGIERLYSHQAECW 64
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
A AG+++VVAT T+SGK+LCYN+PVL+ + D S+ ALY+FPTKALAQDQ+ L
Sbjct: 65 DALAAGRDIVVATPTASGKTLCYNMPVLDTICRDPSARALYIFPTKALAQDQVAELNEWI 124
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
+ YDGDT R +R+ +++TNPDMLH +ILP+H ++ R+ NL
Sbjct: 125 GRLRTQVQSFTYDGDTPVHARQRIREAGHIVVTNPDMLHAAILPHHTKWLRLFENL---- 180
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
R+VVIDEAH Y+G FG H A +LRRL R+C+ YGS P F+FS+A
Sbjct: 181 ---------------RYVVIDEAHIYRGVFGSHVANVLRRLQRICA-FYGSHPQFIFSSA 224
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T ANP E L T+ +I GSP ++ V++NP + S L + + R A
Sbjct: 225 TIANPGELTSRLCGRETM-VIDESGSPEGERHTVVYNP-PIVHSQLGLRASSLQTARRLA 282
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYR 564
+ SEVS IAF ++R E++ SY + E L I YR
Sbjct: 283 RRLLD--SEVS------------TIAFVKTRTQVEVLASYLKADARE---RLRSRIVGYR 325
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
GY+ +RR IER G + GV +TNALELG+D+G + + +G+PGSIAS+ QQ+GR+
Sbjct: 326 GGYLPNERRAIERGLRSGDILGVVSTNALELGVDIGSLQAAITVGYPGSIASIRQQSGRA 385
Query: 625 GRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
GRR+ SLA++VA LDQY +++PE L E I N +L HL C+A E P
Sbjct: 386 GRRKGISLALFVANASALDQYLVRHPEALLAGSPEAARIYPDNLLILMDHLKCSAYELPF 445
Query: 685 SLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESE 744
+ DE + TT + YL+ L + + + +PSH IS+R+ E
Sbjct: 446 AA--DESFAVE------TTAELLEYLADARVLHKGSDNRYHWMADALPSHGISLRSAAQE 497
Query: 745 RYEVIDMQSNE---VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADL 801
+ID V+ E + A ++E A+Y+HQ +Y V++L+L + A + D
Sbjct: 498 NVLIIDQTDVARPIVIGETDRFSALTTLHEEAIYLHQAKSYQVEKLDLDNGKAYVRAVDC 557
Query: 802 KYFTKTRDYTDI-------HVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLW 854
Y+T + HV G + T +A T T F
Sbjct: 558 DYYTDAELAVRLQVLDELQHVEGAGVIHRTG------------EVAVNATPTLF------ 599
Query: 855 RGSGIIFDTVE------LYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALL 908
I FDT E ++LP+ + W Q + AV ++ S L H L
Sbjct: 600 --KKIKFDTHENLGWGRIHLPEAELHTTGYWCTFDQDLLAVGPD--AWESALKGFGHLLK 655
Query: 909 HVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
H V ++ C+ SDL D Y + +YD +PGG G+ ++
Sbjct: 656 HAVALHCMCSVSDLHAAV-QVRDPLYIQPTVYVYDAYPGGIGICER 700
>gi|398311171|ref|ZP_10514645.1| dead/deah box helicase domain-containing protein [Bacillus
mojavensis RO-H-1]
Length = 749
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 239/739 (32%), Positives = 391/739 (52%), Gaps = 60/739 (8%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+V+ +I R+A +P+ + + K+AL GI LY+HQ + G+++V T T
Sbjct: 19 VVNWHEIEPREARTRPMPERIDERIKTALSKRGIDALYTHQYSAFQYVQKGESIVTVTPT 78
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGD 339
+SGK+LCYNLPVL++++ D ++ ALY+FPTKALAQDQ L + I YDGD
Sbjct: 79 ASGKTLCYNLPVLQSIAEDDTNRALYLFPTKALAQDQKSELNEIIDEMGIDIKSFTYDGD 138
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T+ R +R ++ITNPDMLH +ILP+H ++ + NL
Sbjct: 139 TSPAIRQKVRKAGHIVITNPDMLHSAILPHHTKWVSLFENL------------------- 179
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
+++VIDE H Y+G FG H A ++RRL R+C Y SDP F+ ++AT ANP+E +L
Sbjct: 180 KYIVIDELHTYRGVFGSHVANVIRRLKRIC-RFYSSDPIFICTSATIANPKELGEQLTG- 237
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
+++ L+ ++G+P +K FV +NP ++N+ N S EV+ L
Sbjct: 238 NSMRLVDDNGAPSGRKHFVFYNP-----PIVNQ----------PLNIRKSATVEVNELAK 282
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDF 579
E +++ ++ I F RSR E++LS+ +E++++ SI YR GY+ ++RR IER
Sbjct: 283 EFLKNKVQTIVFARSRVRVEIILSHIQELVKKKIG--AKSIRGYRGGYLPKERREIERGL 340
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFE 639
G++ GV +TNALELG+D+G + V + G+PGS+AS WQQAGR+GRR SL V VA
Sbjct: 341 REGEILGVVSTNALELGVDIGQLQVCIMTGYPGSVASAWQQAGRAGRRHGESLIVMVANS 400
Query: 640 GPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSS 699
P+DQY +++PE F E I+ +N +L HL CA+ E P DE+ FG S
Sbjct: 401 TPIDQYIVRHPEYFFDRSPESARINPENLIILVDHLKCASYELPFKA--DEE-FGPLDVS 457
Query: 700 GITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVI---DMQSNEV 756
I YL + L + + + + +E P+ IS+R+ E ++ D+ + +
Sbjct: 458 DILE-----YLQEEGVLHRNGERYHW-ANESFPASNISLRSASQENVVIVDQTDIANVRI 511
Query: 757 LEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVS 816
+ E++ A +++ A+Y+H+G + V++L+ K A ++ D++Y+T + V
Sbjct: 512 IGEMDRFSAMTLLHDEAIYLHEGVQFQVEKLDWDHKKAYVRRVDVEYYTDANLAVQLKVL 571
Query: 817 GGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQ 876
+ + T AL + GSG I +LP+ +
Sbjct: 572 EIDKTKERGRTSLHYGDVTVNALPTIFKKIKMTTFENI-GSGPI------HLPEEELHTS 624
Query: 877 AVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFP 936
A W+++ + + E+ + L S+ L H+VP+Y+ C+ +D+ P
Sbjct: 625 AAWLEIKTIDEDIGEK--TLEQLLLGISNVLQHIVPVYIMCDRNDVHVVSQIKAAHTGLP 682
Query: 937 ERILLYDRHPGGTGVSKQV 955
+ LYD +PGG G++++V
Sbjct: 683 T-VFLYDHYPGGIGLAEEV 700
>gi|296166705|ref|ZP_06849130.1| DEAD/DEAH box family ATP-dependent RNA helicase [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295897970|gb|EFG77551.1| DEAD/DEAH box family ATP-dependent RNA helicase [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length = 780
Score = 391 bits (1004), Expect = e-105, Method: Compositional matrix adjust.
Identities = 254/746 (34%), Positives = 379/746 (50%), Gaps = 68/746 (9%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
HV ++ R P + A G+ +SHQ+ + + AG++VVV+T T+S
Sbjct: 25 HVAELPPRTGRPQGWPAWADPDVVRAFTDRGVGSPWSHQSAAAELAHAGRHVVVSTGTAS 84
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAF----DASIDIG--V 335
GKSL Y LPVL AL+ D + LY+ PTKAL DQLRA A+T A D + +
Sbjct: 85 GKSLAYQLPVLHALATDPRARVLYLSPTKALGHDQLRAAHALTAAIPRLHDPNFGVAPTA 144
Query: 336 YDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLI 395
YDGD+ + R + R+ +R L +NPDM+H+SIL H +++ +L NLR
Sbjct: 145 YDGDSPAEVRRFARERSRWLFSNPDMIHLSILRNHARWAVLLRNLR-------------- 190
Query: 396 FLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCME 455
FV++DE H Y+G FG + A++LRRL RLC+ Y S P+ VF++AT+ P E
Sbjct: 191 -----FVIVDECHYYRGVFGSNVAMVLRRLLRLCAR-YSSAPTVVFASATTDAPGATAAE 244
Query: 456 LANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVS 515
L L +E + DGSP + LW P LR+ L N A S +E +
Sbjct: 245 LIGLP-VEEVTEDGSPQGARTIALWEP--ALRADLLGE--------NGAPVRRSAGAEAA 293
Query: 516 YLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRI 575
+ A+++ G + + F RSR+ EL + L++ AP L + YRAGY+AEDR +
Sbjct: 294 RVMADLIAEGAQTLTFVRSRRAAELTALGAQARLDDVAPDLAGKVASYRAGYLAEDRTAL 353
Query: 576 ERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVY 635
ER G+L G+A TNALELG+D+ +D + GFPG++AS WQQAGRSGRR + +L V
Sbjct: 354 ERALAEGRLRGLATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVL 413
Query: 636 VAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGS 695
+A + PLD Y + +P L P+E ID N +L L+CAA E PL + +
Sbjct: 414 IARDDPLDTYLVHHPAALLGKPVERVVIDPANPYLLGPQLLCAATEMPLDEAEVRDFGAT 473
Query: 696 GLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNE 755
++ G L + G L + K F G E P + IR + +++ +
Sbjct: 474 DVAGG---LVDDGLLRR-----RNGKYFPAAGLE--PHAAVDIRGSAGGQVVIVEADTGR 523
Query: 756 VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHV 815
+L +A ++ GAVY+HQG +Y+V LNL IA D Y T R+ TDI V
Sbjct: 524 LLGSTGVGQAPASIHPGAVYLHQGESYVVDSLNLEDAIAFVHAEDPGYATFARELTDIAV 583
Query: 816 SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYES 875
+G + Q T + TVT G+ R R SG + D +EL +P+ + +
Sbjct: 584 TGTGE-------RSQFGPVTLGLVPVTVTHRVVGYLRR-RLSGEVIDFIELDMPEQTLAT 635
Query: 876 QAVWIQVPQSVKAVVEQNFS---FRSGLHAASHALLHVVPIYVRCNFSDLA----PECPN 928
AV + + A++ + LHAA HA + ++P+ C+ D+ P+
Sbjct: 636 TAVMYTIAE--DALLRKGIDAPRIPGSLHAAEHAAIGLLPLVASCDRGDIGGLSTAVGPD 693
Query: 929 PHDSRYFPERILLYDRHPGGTGVSKQ 954
P P + +YD +PGG G +++
Sbjct: 694 PAG---LPS-VFVYDGYPGGAGFAER 715
>gi|433456819|ref|ZP_20414847.1| DEAD/DEAH box helicase [Arthrobacter crystallopoietes BAB-32]
gi|432195680|gb|ELK52191.1| DEAD/DEAH box helicase [Arthrobacter crystallopoietes BAB-32]
Length = 780
Score = 391 bits (1004), Expect = e-105, Method: Compositional matrix adjust.
Identities = 249/747 (33%), Positives = 377/747 (50%), Gaps = 62/747 (8%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATM 278
Q++HV ++ AR A+ PD + SA G+ + + HQ ++ ++ AG++ ++AT
Sbjct: 19 QLLHVRELPARDAIHEPWPDWAHPDVVSAYAGLGVVEPWRHQVQAASSAHAGQHTIIATG 78
Query: 279 TSSGKSLCYNLPVLEALS----------HDLSSSALYMFPTKALAQDQLRALLAMTKAFD 328
T+SGKSL Y LP L+A+ ++ALY+ PTKALA DQL A+ ++
Sbjct: 79 TASGKSLAYQLPTLDAIHRTALDDQVRLEPTGATALYLAPTKALAADQLAAVKSLQLP-- 136
Query: 329 ASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLV 388
++ YDGDT R W+RD+A L++ NPDMLH ILP H ++R
Sbjct: 137 -TVRAETYDGDTDPGARRWIRDHANLVLANPDMLHYGILPNHAWWARY------------ 183
Query: 389 TTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSAN 448
F +RFV++DEAH+Y+G FG H A +LRRL R+CS YG+DP F+ ++AT+
Sbjct: 184 -------FRRLRFVIVDEAHSYRGVFGSHVANLLRRLRRICSS-YGADPVFIGASATAGE 235
Query: 449 PREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTS 508
P L + + + D SP W P TD+ N A +
Sbjct: 236 PEVSFGRLIG-APVTSVTEDCSPHGSTTIAFWEP----------QLTDLKG-ENGARERR 283
Query: 509 SPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYV 568
+ ++E + L A +V +R IAF +SR+ E + S T+ +LE+ P L I YR+GY+
Sbjct: 284 TVVAETADLLANLVSARVRTIAFIKSRRGAETISSITKRLLEDVHPSLPGRIAAYRSGYL 343
Query: 569 AEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRE 628
E+RR +E G+L GV++T+ALELGID+ +D L G+PG+ ASL+QQ GR+GR
Sbjct: 344 PEERRELEAKLRSGQLLGVSSTSALELGIDISGLDAVLVAGWPGTKASLYQQIGRAGRAG 403
Query: 629 RPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIY 688
+ ++A +VA + PLD Y + +PE +F +E D N VL HL AA E PL
Sbjct: 404 QDAVAAFVASDDPLDTYLVHHPETVFDVSVEATVFDPSNPYVLGPHLCAAAQELPLEAA- 462
Query: 689 DEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEV 748
D + FG + + L GYL P+ + H + + +++RA +
Sbjct: 463 DLELFGPASAQLVDELTADGYLRRRPA-------GWFWTHAESAAAMVNLRADGGGPINI 515
Query: 749 IDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTR 808
++ +S +L ++ ++ +Q + GAVY+HQG TY+V ELN A+ +++ Y+T+ R
Sbjct: 516 VESESGTLLGTMDSPQSHYQAHTGAVYVHQGTTYVVDELNEQDHCAMVTRSNPDYYTQAR 575
Query: 809 DYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYL 868
D T I V S D T A VTT F R S I L L
Sbjct: 576 DVTQIEV------LEEHRSADWGT-VRASFGDVKVTTKVVSFQRKAFISNEIMGEEPLDL 628
Query: 869 PKYSYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECP 927
P ++AVW V Q + A LHAA HA + ++P+ + D+
Sbjct: 629 PARELFTKAVWFTVGEQDLTAAGLTAARIPGSLHAAEHAGIGLLPLVASSDRWDIGGVST 688
Query: 928 NPHDSRYFPERILLYDRHPGGTGVSKQ 954
H P I +YD HPGG G +++
Sbjct: 689 ALHADTGKPT-IFVYDGHPGGAGFAER 714
>gi|207346497|gb|EDZ72977.1| YDR291Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 660
Score = 390 bits (1003), Expect = e-105, Method: Compositional matrix adjust.
Identities = 242/693 (34%), Positives = 366/693 (52%), Gaps = 76/693 (10%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
+M+E L+ Q+ H I +R A + L ++ YSHQA++I
Sbjct: 27 QMIEKLKSTEFYASQIKHCFTIPSRTAKYKGLCFELAPEVYQGMEH---ENFYSHQADAI 83
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRA----L 320
+ G+NV++ T TSSGKSL Y L ++ L D S+ +Y+FPTKALAQDQ RA L
Sbjct: 84 NSLHQGENVIITTSTSSGKSLIYQLAAIDLLLKDPESTFMYIFPTKALAQDQKRAFKVIL 143
Query: 321 LAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNL 380
+ + +A +D YDGDT ++R ++R NAR++ TNPDM+H SILP H + L +L
Sbjct: 144 SKIPELKNAVVD--TYDGDTEPEERAYIRKNARVIFTNPDMIHTSILPNHANWRHFLYHL 201
Query: 381 RLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVY-GSDPSF 439
+L VV+DE H YKG FG H AL++RRL RLC Y S F
Sbjct: 202 KL-------------------VVVDELHIYKGLFGSHVALVMRRLLRLCHCFYENSGLQF 242
Query: 440 VFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDD 499
+ +AT +P +H ++ ++ + LI DGSP K V+WNP +L + +
Sbjct: 243 ISCSATLKSPVQHMKDMFGINEVTLIHEDGSPTGAKHLVVWNP-----PILPQHE----- 292
Query: 500 TRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETA-PHLVD 558
K + I E + + +++ + +R IAFC R++CEL++ R I ET LV
Sbjct: 293 -----RKRENFIRESAKILVQLILNNVRTIAFCYVRRVCELLMKEVRNIFIETGREDLVT 347
Query: 559 SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLW 618
+ YR GY A DRR+IER+ F G L V +TNALELGID+G +D L GFP S+A+
Sbjct: 348 EVMSYRGGYSASDRRKIEREMFHGNLKAVISTNALELGIDIGGLDAVLMCGFPLSMANFH 407
Query: 619 QQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKL-----FKSPIECCHIDAQNHKVLEQ 673
QQ+GR+GRR SL + VA + P+DQ+++ +PE L F+S + +D N +LE
Sbjct: 408 QQSGRAGRRNNDSLTLVVASDSPVDQHYVAHPESLLEVNNFESYQDLV-LDFNNILILEG 466
Query: 674 HLVCAALEHPLSLIYDEKYFGSGLSSGITTLK----NRGYLSSDPSLDSSAKIFEYIGHE 729
H+ CAA E P++ D++YF I + GY +S+ L
Sbjct: 467 HIQCAAFELPINFERDKQYFTESHLRKICVERLHHNQDGYHASNRFL------------- 513
Query: 730 KMPSHTISIRAIESERYEVIDMQS--NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKEL 787
PS +S+R E +++ V+D+ + N ++EEIE S+ F +Y+G +++HQG+ YLVKE
Sbjct: 514 PWPSKCVSLRGGEEDQFAVVDITNGRNIIIEEIEASRTSFTLYDGGIFIHQGYPYLVKEF 573
Query: 788 NLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTW 847
N + A Q+ D+ + T RD+TD+ + I + + T
Sbjct: 574 NPDERYAKVQRVDVDWVTNQRDFTDV-----DPQEIELIRSLRNSDVPVYFGKIKTTIIV 628
Query: 848 FGFYRLWRGSGIIFDTVELYLPKYSYESQAVWI 880
FGF+++ + II D +E + P S+ +WI
Sbjct: 629 FGFFKVDKYKRII-DAIETHNPPVIINSKGLWI 660
>gi|182437101|ref|YP_001824820.1| ATP-dependent RNA helicase [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|178465617|dbj|BAG20137.1| putative ATP-dependent RNA helicase [Streptomyces griseus subsp.
griseus NBRC 13350]
Length = 774
Score = 390 bits (1002), Expect = e-105, Method: Compositional matrix adjust.
Identities = 257/756 (33%), Positives = 390/756 (51%), Gaps = 55/756 (7%)
Query: 206 MVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIM 265
+++ L G G ++ H E + R PD + SA++ GI+ ++HQA +
Sbjct: 2 ILDRLATGAGRAARITHTEHLPPRSGTHAIWPDRIRPEVISAIERAGIAHPWAHQATAAE 61
Query: 266 ASLAGKNVVVATMTSSGKSLCYNLPVLEAL------SHDLSSSALYMFPTKALAQDQLRA 319
+L G++VV+AT T+SGKSL Y PVL L + ++ALY+ PTKALA DQ R+
Sbjct: 62 HALDGESVVIATGTASGKSLAYLAPVLSTLLDGSEAPNGRGATALYLAPTKALAADQRRS 121
Query: 320 LLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSN 379
+ A+ ++ VYDGDT ++R W+R A ++TNPDMLH ILP H +++ L
Sbjct: 122 VKALAAPLGHAVRPAVYDGDTPVEEREWVRQYANYVLTNPDMLHRGILPSHPRWASFLRA 181
Query: 380 LRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSF 439
LR +VVIDE H Y+G FG H A +LRRL RLC+ YG++P F
Sbjct: 182 LR-------------------YVVIDECHTYRGVFGSHVAQVLRRLRRLCAR-YGAEPVF 221
Query: 440 VFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDD 499
+ ++AT+A+P L L E + +D SP + +F LW P TD+
Sbjct: 222 LLASATAADPAAAAGRLTGLPVRE-VSDDASPRGELVFALWEP----------PLTDLHG 270
Query: 500 TRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDS 559
+ A + ++ +E + L ++ +R +AF RSR+ EL+ +E L E L
Sbjct: 271 EKGAPVRRTA-TAETADLLTDLTLQDVRSVAFVRSRRGAELISMIAKERLAEVDRSLPKR 329
Query: 560 ICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQ 619
+ YR GY+ E+RR +ER G+L G+AAT ALELGIDV +D + G+PG+ ASLWQ
Sbjct: 330 VAAYRGGYLPEERRALERALHSGELLGLAATTALELGIDVSGLDAVVISGYPGTRASLWQ 389
Query: 620 QAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAA 679
QAGR+GR + +LAV VA + PLD Y + +PE LF+ P+E +D N VL HL AA
Sbjct: 390 QAGRAGRSGQGALAVLVARDDPLDTYLVHHPEALFQQPVESTVLDPDNPYVLAPHLCAAA 449
Query: 680 LEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIR 739
E PL+ D FG + + L+ L A + + E+ + IR
Sbjct: 450 AELPLTE-PDIALFGPAVPELLPQLEAAKLLR------RRASGWHWTRRERA-ADLADIR 501
Query: 740 AIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKA 799
++++ + +L ++E+ A V+EGAV++HQG T+LV++L+L +AL ++A
Sbjct: 502 GGGGRPVQIVEEGTGRLLGTVDEAAAHTAVHEGAVHLHQGRTHLVRKLDLEDSVALVEQA 561
Query: 800 DLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGI 859
+ Y T RD T I V + T+I Q + VT F R +G
Sbjct: 562 EPPYSTVARDTTAITVLETD----TEIPWGQGRLCYG---SVEVTNQVVSFLRRKLITGE 614
Query: 860 IFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSG-LHAASHALLHVVPIYVRCN 918
+ +L LP + ++AVW V + N G LHAA HA + ++P++ C+
Sbjct: 615 VLGETKLDLPPRTLRTRAVWWTVTEDQLDAARINPEILGGALHAAEHASIGLLPLFATCD 674
Query: 919 FSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
D+ H P + +YD HPGG G +++
Sbjct: 675 RWDIGGVSVPLHPDTLLPT-VFVYDGHPGGAGFAER 709
>gi|433602162|ref|YP_007034531.1| DEAD/DEAH box helicase domain protein [Saccharothrix espanaensis
DSM 44229]
gi|407880015|emb|CCH27658.1| DEAD/DEAH box helicase domain protein [Saccharothrix espanaensis
DSM 44229]
Length = 782
Score = 390 bits (1002), Expect = e-105, Method: Compositional matrix adjust.
Identities = 251/742 (33%), Positives = 379/742 (51%), Gaps = 58/742 (7%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+ H D+ + A V P SAL G+ + + HQA++ AG++VVVAT T
Sbjct: 33 LTHRADLPRQDAQAVPWPSWAAPEVVSALVERGVPEPWRHQAQAAEHVWAGRHVVVATGT 92
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGD 339
+SGKSL Y LPVL A+ D ++ALY+ PTKAL DQLR++ A+ ++ +DGD
Sbjct: 93 ASGKSLAYQLPVLSAVHTDPKATALYLSPTKALGADQLRSVEALGVP---NVRAATFDGD 149
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T +R W+R +A + TNPDMLH ILP H ++ R F +
Sbjct: 150 TPMAERDWVRAHANWVFTNPDMLHRGILPNHAKWIRF-------------------FRRL 190
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
+VV+DE H+Y+G FG H AL+LRRL R+ + YG+DP FV ++AT A+P L +
Sbjct: 191 SYVVVDECHSYRGVFGSHVALLLRRLRRV-ARRYGADPVFVLASATVADPATSASRLTGV 249
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
E + DGSP A + LW P +L + + + N A S +E + + A
Sbjct: 250 PC-EAVTEDGSPRAGRTVALWEP-----PLLTELEGE-----NGAPVRRSAGAETARILA 298
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDF 579
++V G R +AF RSR EL R +L E P L + YR GY+ E+RR +E+
Sbjct: 299 DLVVEGARSLAFVRSRVGAELTAIGARRVLAEVDPELATRVAAYRGGYLPEERRALEKAV 358
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRR-ERPSLAVYVAF 638
G L GVA TNALELG+D+ +D + GFPG++AS WQQAGR+GR + +L V+VA
Sbjct: 359 SSGDLLGVATTNALELGVDIVGLDAVVVAGFPGTLASFWQQAGRAGRTGDSGALVVFVAR 418
Query: 639 EGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLS 698
+ PLD Y + P + + P+E +D N VLE L CAA E PL+ E++ G
Sbjct: 419 DDPLDTYLVHNPAAVLERPVEATVLDPTNPYVLEPQLACAAAELPLTPDSLEEFGGDLAV 478
Query: 699 SGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLE 758
+ + R L P+ + + H++ P + IR E+ V++ S +L
Sbjct: 479 EVLDGMVERKLLRRRPN------GWYWTSHDR-PHGEVDIRGSGGEQVVVVEGDSGRMLG 531
Query: 759 EIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGG 818
++ + A + V++GAVY+HQG +Y+V L+L S IAL + T RD DI V
Sbjct: 532 TVDPAAACWTVHDGAVYLHQGESYVVDRLDLDSGIALVHAEKPDWTTTARDTKDITV--- 588
Query: 819 NNAYATKISKDQLTKTTAQALA-CTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQA 877
++ +++ + L VT+ G+ R SG + D+V L LP+ + ++A
Sbjct: 589 -----VRVLEERRFAGVSVCLGEVDVTSQVVGYLRK-LSSGQVVDSVPLDLPERTLRTRA 642
Query: 878 VWIQVPQSVKAVVEQNFSF-----RSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDS 932
VW V + + LHAA HA + ++P++ C+ D+ H
Sbjct: 643 VWYTVGEELLGSAPGGAGLDPARIPGALHAAEHAAIGLLPLFATCDRWDIGGVSTALHQD 702
Query: 933 RYFPERILLYDRHPGGTGVSKQ 954
+ ++D HPGG G + +
Sbjct: 703 -TGEATVFVHDGHPGGAGFADR 723
>gi|317128911|ref|YP_004095193.1| DEAD/DEAH box helicase [Bacillus cellulosilyticus DSM 2522]
gi|315473859|gb|ADU30462.1| DEAD/DEAH box helicase domain protein [Bacillus cellulosilyticus
DSM 2522]
Length = 760
Score = 390 bits (1002), Expect = e-105, Method: Compositional matrix adjust.
Identities = 257/748 (34%), Positives = 384/748 (51%), Gaps = 72/748 (9%)
Query: 225 DISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKS 284
++ + A +V P A+ + K AL S GI LYSHQA + + G+N+V T T+SGK+
Sbjct: 25 EMDEQAATVVPYPQAMDERIKKALHSRGIEGLYSHQASAFEKVIEGENIVAVTPTASGKT 84
Query: 285 LCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKD 344
CYNLPV++ + S ALY+FPTKALAQDQ + D +I+ YDGDT
Sbjct: 85 FCYNLPVIQRHINRPDSRALYIFPTKALAQDQKSEINEFIDDMDMNINSYTYDGDTPANI 144
Query: 345 RMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVI 404
R +R ++ITNPDMLH +ILP+H ++ + NL I VI
Sbjct: 145 RQVVRKAGHIVITNPDMLHSAILPHHTKWISLFENLETI-------------------VI 185
Query: 405 DEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLEL 464
DE H Y+G FG H A ++RRL R+C + YGS+PSF+ ++AT ANP+E EL + L
Sbjct: 186 DELHTYRGVFGSHVANVIRRLKRICRY-YGSNPSFICTSATIANPKELSTELIG-DKVTL 243
Query: 465 IQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQH 524
I N+G+P +K F+L+NP ++NK + R + K V+ L A ++
Sbjct: 244 IDNNGAPRGKKHFILYNP-----PIVNKQL----NIRKPSTKV------VNELAATFLKE 288
Query: 525 GLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKL 584
++ I F RSR E++LS+ +E+++ SI YR GY+ RR IER G+
Sbjct: 289 RIQTIVFSRSRVSVEIILSHLQELVKHEIQR--KSIRGYRGGYLPNQRREIERSLRTGET 346
Query: 585 CGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQ 644
GV +TNALELG+D+G + V + G+PGSIAS WQQAGR+GRR S+ + V PLDQ
Sbjct: 347 IGVVSTNALELGVDIGQLQVCVMNGYPGSIASSWQQAGRAGRRMDESIVIMVGNSNPLDQ 406
Query: 645 YFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLS-SGITT 703
Y ++PE FK E ++ N +L HL CAA E P F G S G+
Sbjct: 407 YIFQHPEFFFKGSPETARLNKDNLIILVDHLKCAAYELP---------FEKGDSFDGLEI 457
Query: 704 LKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVID---MQSNEVLEEI 760
+ YL+ + L + Y ++ P+H IS+R+ E +ID ++ + V+ E+
Sbjct: 458 EEILHYLAEERVLHEQQNKW-YWMNDAFPAHNISLRSAAQENVVIIDQTYVEKHRVIGEM 516
Query: 761 EESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNN 820
+ A +++ A+Y+H+G Y V+ L+ K A ++ D++YFT + V
Sbjct: 517 DTFSAMTLLHDEAIYLHEGTQYQVEYLDWHEKKAYVREVDVEYFTDANLAVQLKV----- 571
Query: 821 AYATKISKD-QLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVW 879
+ K+ QL ++ Q VT F +L + + ++LP+ + +
Sbjct: 572 ---LDLDKEIQLNESVLQYGDVMVTAMATIFKKLKLDTFENIGSGPIHLPEQELHTNGIA 628
Query: 880 IQ-VPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDL--APECPNPHDSRYFP 936
+ VK + E L +H L HV + V C+ +DL PE H P
Sbjct: 629 LSFTSPEVKNMNEDKLEHM--LMGLAHVLQHVACVRVMCDKNDLHAVPEVKAIHSE--LP 684
Query: 937 ERILLYDRHPGGTGVSKQV---TDMKMN 961
+ LYDR+PGG G+S V DM +N
Sbjct: 685 -TVFLYDRYPGGIGLSDSVFKQIDMIIN 711
>gi|227832057|ref|YP_002833764.1| helicase [Corynebacterium aurimucosum ATCC 700975]
gi|262184089|ref|ZP_06043510.1| putative helicase [Corynebacterium aurimucosum ATCC 700975]
gi|227453073|gb|ACP31826.1| putative helicase [Corynebacterium aurimucosum ATCC 700975]
Length = 790
Score = 390 bits (1002), Expect = e-105, Method: Compositional matrix adjust.
Identities = 264/772 (34%), Positives = 395/772 (51%), Gaps = 70/772 (9%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E+VEHL + + ++ H + A+ A E P+ +L ++AL+ G++KLY+HQ
Sbjct: 9 ELVEHLVERF-PESELTHSTTLPAQPASYAEWPEWVLPKLRAALEEQGVAKLYAHQVAVA 67
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
A+ G++VVV+T TSSGKSL Y LP+L L+ D ++ ALY+ PTKAL DQLRA+L +T
Sbjct: 68 QAAWEGRDVVVSTGTSSGKSLGYRLPILSRLAQDPTACALYITPTKALGSDQLRAVLELT 127
Query: 325 KAFDASIDI--GVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRL 382
+ D+ YDGDT + R +RD AR + +NPDM+H S+L H +++R+L +L+
Sbjct: 128 QGIATLRDVHPAPYDGDTPTEARAGIRDQARFIFSNPDMIHSSLLGAHQRWARVLRHLK- 186
Query: 383 IAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFS 442
F+VIDEAHAY+G FG + AL+LRRL RLC H YGS P + +
Sbjct: 187 ------------------FIVIDEAHAYRGVFGANVALVLRRLLRLCEH-YGSRPVVIAA 227
Query: 443 TATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRN 502
+AT +P H L + DG+P + LW P + + + +N
Sbjct: 228 SATMRDPARHAARLTGREFFP-VTEDGAPTGARTVALWEP-GFMEGI---------EGQN 276
Query: 503 AANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEE--TAPHLVDSI 560
A + +E +++ A +V G R + F RSR+ E E L P I
Sbjct: 277 GAPVRRAATTEAAWMMAALVAQGARTLTFVRSRRAAETTALRAAEELSGRLGRPDFARRI 336
Query: 561 CVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQ 620
YRAGY+AEDRR +E+ G L GVA T+ALELGIDVG +D + GFPG++AS WQQ
Sbjct: 337 AAYRAGYLAEDRRALEQALDDGSLLGVATTSALELGIDVGGLDAVVTAGFPGTVASFWQQ 396
Query: 621 AGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAAL 680
AGR+GRR + SL V VA + P+D Y + +PE L P+E + N +L H+ CAA+
Sbjct: 397 AGRAGRRGQGSLVVLVARDEPMDTYLVHHPEALLGRPVEASVFNPANPYILGGHVYCAAV 456
Query: 681 EHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMP--SHT-IS 737
E PLS D S + L +G L P +A + E P +HT +S
Sbjct: 457 EKPLS---DADVAAFRAESVVHDLAQQGLLRRRPQGWFAAPL-PAGSSELTPETAHTAVS 512
Query: 738 IRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNL-------- 789
+R E ++D +L I+ ++A QV+ GAVY+H+G +++++EL+L
Sbjct: 513 LRGGSGEEVMIVDSSDGRLLGTIDSARAVSQVHPGAVYLHRGESFVIEELHLGGAGGAAP 572
Query: 790 -SSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTA----QALACTVT 844
+AL Y T+ + TDI + D L +L VT
Sbjct: 573 AEPGVALAVPKTPDYTTQPKSTTDIRILS---------EADDLVNYAPGLWVASLEVEVT 623
Query: 845 TTWFGF-YRLWRGSGIIFDTVELYLPKYSYESQAVWIQV-PQSVKAVVEQNFSFRSGLHA 902
G+ RL GS + + + L LP+ ++AV + P ++ A+ LHA
Sbjct: 624 DKVTGYQVRLPDGS--VGEDIPLDLPEQRLVTRAVAYTIDPLALAAMGVTAGRTPGTLHA 681
Query: 903 ASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
A HA + ++P+ C+ D+ H P + +YD HPGG G +++
Sbjct: 682 AEHAAIGLLPLIATCDRWDIGGVSTAQHADTGLPT-VFVYDGHPGGAGFAEE 732
>gi|134096986|ref|YP_001102647.1| DEAD/DEAH box helicase [Saccharopolyspora erythraea NRRL 2338]
gi|291006268|ref|ZP_06564241.1| DEAD/DEAH box helicase-like protein [Saccharopolyspora erythraea
NRRL 2338]
gi|133909609|emb|CAL99721.1| DEAD/DEAH box helicase-like [Saccharopolyspora erythraea NRRL 2338]
Length = 790
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 248/746 (33%), Positives = 370/746 (49%), Gaps = 57/746 (7%)
Query: 216 SQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVV 275
++ + HV+ + R A E P + A + G+ + + HQ E A +G++VVV
Sbjct: 23 AESPLRHVKHLPERSARTAEWPSWVPAEVVDAYAARGVREPWVHQVEGADAVRSGQHVVV 82
Query: 276 ATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGV 335
AT T+SGKS+ Y LPVL L D +++ALY+ PTKAL DQLRA+ + I
Sbjct: 83 ATGTASGKSMVYQLPVLSRLLEDRTATALYLSPTKALGADQLRAVEELGLG---GIRAAG 139
Query: 336 YDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLI 395
YDGDT + DR W+R R + TNPDMLH+ +LP H +++R
Sbjct: 140 YDGDTPKVDRDWVRAYGRWVFTNPDMLHLGVLPAHSRWARF------------------- 180
Query: 396 FLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCME 455
F +R+VV+DE H Y+G FG H AL+LRRL R+ H YG+DP FV ++AT ++P +
Sbjct: 181 FRSLRYVVVDECHTYRGVFGSHVALLLRRLRRIAHH-YGADPVFVLASATVSDPGDLGER 239
Query: 456 LANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVS 515
L + I +DGSP + LW P L V+ + N A S SE +
Sbjct: 240 LTG-ARCRAITDDGSPRGARTVALWEP-PLLEEVIGE---------NGAPVRRSAGSETA 288
Query: 516 YLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRI 575
+ E+V R +AF RSR+ E+ + L E L D + YR GY+ EDRR +
Sbjct: 289 RIMTELVIEDARTLAFIRSRRGVEVAALSAQRALAEVDSSLPDRVKAYRGGYLPEDRRAL 348
Query: 576 ERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVY 635
ER G L VA TNALELG+D+ +D + G+PG++AS WQQAGR+GR +L V+
Sbjct: 349 ERALLAGDLRAVATTNALELGVDIAGLDAVIVAGYPGTLASFWQQAGRAGRDGEGALVVF 408
Query: 636 VAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGS 695
VA + PLD Y + +P + + P+E +D N VLE HL CAA E PL + + G+
Sbjct: 409 VARDDPLDTYLVHHPPAVLERPVEATVLDPANPYVLEPHLACAASELPLKEECFDAFGGA 468
Query: 696 GLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNE 755
+ + L G L P Y + P ++ +R + V++ S
Sbjct: 469 PAAEAVHALTADGVLRRRPH-------GWYWTERERPHRSVELRGSGGSQVAVVEGDSGR 521
Query: 756 VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHV 815
+L ++ A V+ GAVY+HQG +++V EL+L++ +AL + T R+ DI V
Sbjct: 522 MLGTVDPDSACATVHPGAVYLHQGESFVVDELDLNTDLALVHAESPDWTTSARESVDISV 581
Query: 816 SGGNNAYATKISKDQLTKTTAQALA-CTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYE 874
+ Q+ A L VT+ G+ R SG + D V L LP
Sbjct: 582 -------LRTVEHRQVGPDVAVCLGDVEVTSQVVGYLRTLP-SGRVLDQVPLDLPARKLV 633
Query: 875 SQAVWIQV-PQSVKAVVEQNFSF-----RSGLHAASHALLHVVPIYVRCNFSDLAPECPN 928
++AVW + P+ + LHAA HA + ++P++ C+ D+
Sbjct: 634 TRAVWYTISPELLCGSAPGGAGLDPARIPGALHAAEHAAIGLLPLFATCDRWDIGGVSTA 693
Query: 929 PHDSRYFPERILLYDRHPGGTGVSKQ 954
H + + ++D HPGG G + +
Sbjct: 694 MH-ADTGEATVFVHDGHPGGAGFADR 718
>gi|86742976|ref|YP_483376.1| DEAD/DEAH box helicase [Frankia sp. CcI3]
gi|86569838|gb|ABD13647.1| DEAD/DEAH box helicase-like [Frankia sp. CcI3]
Length = 804
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 252/757 (33%), Positives = 388/757 (51%), Gaps = 61/757 (8%)
Query: 210 LRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLA 269
LR+ + M H+E + AR PD + + + GI+ +SHQA + A+ A
Sbjct: 39 LRRDVRRARCMTHIERVPARDGCPAPWPDWIDPVLRGRWTAAGIASPWSHQAAAAEAAYA 98
Query: 270 GKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDA 329
G++VV+AT T+SGKSL Y +PVL L + + ALY+ PTKALA DQLRA+ ++
Sbjct: 99 GRSVVLATGTASGKSLGYLMPVLSRLLAEPGARALYLAPTKALAHDQLRAVRSLRLT--- 155
Query: 330 SIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVT 389
I +DGDT +R W+R +A L++TNPDMLH ILP+H ++++ L LR
Sbjct: 156 GIRAAAFDGDTPAAERDWVRAHAGLVLTNPDMLHRGILPFHRRWTQFLRGLR-------- 207
Query: 390 TEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANP 449
+VV+DE H Y+G FG H A ++RRL R+C+ YG+DP F+ ++AT A+P
Sbjct: 208 -----------YVVVDECHGYRGVFGAHVAAVIRRLRRICAR-YGTDPVFLLASATVADP 255
Query: 450 REHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAAN--KT 507
L + + + SP FVL+ P +S D +D +A +
Sbjct: 256 GVSAARLTGVEVEVVDVDG-SPRGPLDFVLYEPPLL---TTGQSSPDREDPTSAPGPGEN 311
Query: 508 SSPI-----SEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICV 562
+P+ +E + L ++V G+R + F RSR+ E+V R L A L D +
Sbjct: 312 GAPVRRSVTAESADLLTDLVADGVRTLVFVRSRRAAEVVAVTARRELGRIAADLADRVAA 371
Query: 563 YRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAG 622
YRAGY+ E+RR +E D G L G AAT+ALELG+D+ +D T+ GFPG++ASLWQQAG
Sbjct: 372 YRAGYLPEERRALEEDLRSGALLGAAATSALELGVDISGLDATVTAGFPGTLASLWQQAG 431
Query: 623 RSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEH 682
R+GR R SLAV VA + PLD Y + +PE +F P+E D N VL HL CAA E
Sbjct: 432 RAGRDGRRSLAVLVARDDPLDTYLVHHPEAVFGRPVEASVFDPDNPYVLAPHLECAAAEL 491
Query: 683 PLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIE 742
D FG + + L RG L P+ + P + IR
Sbjct: 492 -ALTEADLALFGPTAAFAVNDLVRRGRLRRRPT-------GWFWTQRARPD--VDIRGAG 541
Query: 743 SERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLK 802
+++ ++ +L ++ + + V+ GAVY+HQG +++V++L+L +A ++ +
Sbjct: 542 GPPVRIVEARTGRLLGTVDAATSHTTVHAGAVYLHQGSSFVVEDLDLEESVAFVCESAPE 601
Query: 803 YFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACT-VTTTWFGFYRLWRGSGIIF 861
+ T RD+TDI V + S+ ++ L VT+ G+ R +G +
Sbjct: 602 WTTTARDHTDIRV--------VESSRSRVLPDVEVHLGVVEVTSQVVGYQRRLIATGEVL 653
Query: 862 DTVELYLPKYSYESQAVWIQVPQSV--KAVVEQNFSFRSGLHAASHALLHVVPIYVRCNF 919
L LP ++AVW + + +A +E +HAA HA + ++P++ C+
Sbjct: 654 GQEPLDLPPRQLRTRAVWYTLSDDLLARAAIEPA-DVPGAVHAAEHAAIGLLPLFATCDR 712
Query: 920 SDLAPECPNPHDSRYFPER--ILLYDRHPGGTGVSKQ 954
D+ H ER + +YD H GG G +++
Sbjct: 713 WDIGGVSTALHPDT---ERTSVFVYDGHAGGAGFAER 746
>gi|134046189|ref|YP_001097674.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
maripaludis C5]
gi|132663814|gb|ABO35460.1| DEAD/DEAH box helicase domain protein [Methanococcus maripaludis
C5]
Length = 764
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 248/754 (32%), Positives = 397/754 (52%), Gaps = 67/754 (8%)
Query: 204 LEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAES 263
E++ +++ + HV +I + E L + ++ L + GI K Y+HQ E+
Sbjct: 5 FELLNNMQHNKSFSDYIEHVREIPEKDPEYSEEELNLPECIQNYLDNKGI-KPYTHQYET 63
Query: 264 IMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAM 323
+ + GKNV++ T T+SGKSLC+NLPV E L ++ S++ALY++PTKAL+ DQL L +M
Sbjct: 64 LKHARNGKNVLITTSTASGKSLCFNLPVFEKLVNNSSATALYIYPTKALSNDQLTTLKSM 123
Query: 324 TKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQ-FSRILSNLRL 382
I YDGDT + R ++ +RL+ TNP MLH ILP+H ++R NL+
Sbjct: 124 ESEMGLEIHPDKYDGDTNKAIRPEIKRKSRLIATNPYMLH-RILPHHDHGWARFFRNLK- 181
Query: 383 IAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFS 442
+V+IDEAH Y+G FG H + ++RRL R+C Y S+P F+ S
Sbjct: 182 ------------------YVIIDEAHMYRGVFGSHVSFLIRRLRRICK-FYKSNPQFIMS 222
Query: 443 TATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRN 502
TAT ANP E +L L E+++NDGS ++K F+L+N L K + +
Sbjct: 223 TATLANPEEFSKKLTGLD-FEIVENDGSQKSKKYFILYN--------LMKQENSEESWNK 273
Query: 503 AANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICV 562
AA + LF + L+ +AF R+R++ EL+ Y + L+ P L + +
Sbjct: 274 AAVR----------LFNANMLSELQTLAFTRTRRMAELLSVYVKAELD---PMLQNKVSA 320
Query: 563 YRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAG 622
YR+GY ++R IE G+L G +TNALE+GID+G +D + G+PG++ SLWQQAG
Sbjct: 321 YRSGYSTKNRIEIENRLKRGELWGTFSTNALEVGIDIGSLDSVIMYGYPGTLMSLWQQAG 380
Query: 623 RSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEH 682
R+GR S+ A LDQY +K+PE +F+ E ID N +LE+ L+CAA E
Sbjct: 381 RAGRAGSDSIVTLFANADALDQYLVKHPEMIFEKTPENAVIDLNNPYILEKQLLCAAYEL 440
Query: 683 PLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIE 742
L+ ++ F + + I+ L+ +G L Y+ K P+ ++I I
Sbjct: 441 YLTPDGNDLEFCTDIKKHISNLEEKGLLDKQNG--------GYLSTVKNPALNVNINFIS 492
Query: 743 SERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLK 802
S ++V D ++ +++EEI+ + F + + GA+ ++Q YL++ ++ ++I +K
Sbjct: 493 SNNFKVKD-ENGKLIEEIDMWRVFSEAHPGAILINQSVKYLIESMDYKNRICKARKVKYD 551
Query: 803 YFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFD 862
Y T TDI + +I + T V T +F F + G I +
Sbjct: 552 YHTDAYALTDIKIE-------KEIDSRNYGEFTFHFGEVLVITEYFEFAE--KKYGNILN 602
Query: 863 TVELYLPKYSYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSD 921
L LP +++ A+WI P+ +KAV E + S GLH A HA++++ P++V C+ SD
Sbjct: 603 RKPLVLPPLKFKTTAMWITFPPRFMKAVTEGDKSDIGGLHGAEHAMINIFPLHVMCDRSD 662
Query: 922 LAPECPNPH-DSRYFPERILLYDRHPGGTGVSKQ 954
+ H D++ I +YD GG G+S++
Sbjct: 663 IGGVSVLKHQDTKR--STIFIYDGMEGGIGLSEK 694
>gi|441152506|ref|ZP_20966050.1| ATP-dependent RNA helicase [Streptomyces rimosus subsp. rimosus
ATCC 10970]
gi|440618692|gb|ELQ81757.1| ATP-dependent RNA helicase [Streptomyces rimosus subsp. rimosus
ATCC 10970]
Length = 753
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 245/731 (33%), Positives = 374/731 (51%), Gaps = 63/731 (8%)
Query: 235 EIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEA 294
E P + A+++ GI + ++HQA ++ +L G++VV+AT T+SGKSL Y +PVL
Sbjct: 10 EWPARIRPEVADAVRAAGIERPWTHQARTVEHALRGESVVIATGTASGKSLAYLVPVLSG 69
Query: 295 L------SHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWL 348
L + ++ALY+ PTKALA DQ RA+ + +++ VYDGDT ++R W+
Sbjct: 70 LLEGSEAPNGRGATALYLAPTKALAADQRRAVGELAAPLGSAVRPAVYDGDTPVEEREWV 129
Query: 349 RDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAH 408
R ++TNPDMLH+ ILP H ++S L L+ +VVIDE H
Sbjct: 130 RQYGNYVLTNPDMLHLGILPAHPRWSSFLRALK-------------------YVVIDECH 170
Query: 409 AYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQND 468
Y+G FG H A ++RRL R+C+ YGS+P F+ ++AT+A P + L E + D
Sbjct: 171 TYRGVFGSHVAQVIRRLRRICAR-YGSEPVFLLASATAAEPAQAAERLIGQPVAE-VTED 228
Query: 469 GSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRC 528
SP + +F LW P T++ + A + ++ +E + L ++ +R
Sbjct: 229 TSPRGEVVFALWEP----------PLTELHGEQGAPVRRTA-TAETADLLTDLALQDVRT 277
Query: 529 IAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVA 588
+AF RSR+ EL+ T+E L L + YR GY+ E+RR +ER G L G+A
Sbjct: 278 VAFVRSRRGAELIALITQERLGAIDRALASRVAAYRGGYLPEERRALERALHTGDLLGLA 337
Query: 589 ATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMK 648
AT ALELG+DV +D L G+PG+ ASLWQQAGR+GR + +LA+ VA + PLD Y +
Sbjct: 338 ATTALELGVDVSGLDAVLIAGYPGTRASLWQQAGRAGRSGQGALAILVARDDPLDTYLVH 397
Query: 649 YPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRG 708
+PE LF P+E +D N VL HL AA E PL+ D FG + + +L+ R
Sbjct: 398 HPEALFDQPVESTVLDPDNPYVLAPHLCAAAAELPLTE-DDFSLFGPAVPHILPSLEARK 456
Query: 709 YLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQ 768
L AK + + E+ + IR ++++ + +L ++ + A
Sbjct: 457 LLR------RRAKAWHWTRRERA-ADLADIRGQGGSPVQIVEAGTGRLLGTVDAAAAHTT 509
Query: 769 VYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISK 828
V+ GAV++HQG TYLVK L+L +AL ++AD Y T RD T A I +
Sbjct: 510 VHGGAVHLHQGRTYLVKHLDLEDDVALVEEADPPYSTTARDTT-----------AVSILE 558
Query: 829 DQLTKTTAQALAC----TVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQ 884
+ + C VT + R +G + +L LP + ++AVW V +
Sbjct: 559 TETEIPWGDSRLCFGSVEVTNQVVSYLRRRLITGEVLGETKLDLPPRTLRTRAVWWTVTE 618
Query: 885 SVKAVVEQNFSFRSG-LHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYD 943
N G LHAA HA + ++P++ C+ D+ H P + +YD
Sbjct: 619 DQLDAARVNPEQLGGALHAAEHASIGLLPLFATCDRWDIGGVSLPLHPDTLLPT-VFVYD 677
Query: 944 RHPGGTGVSKQ 954
HPGG G +++
Sbjct: 678 GHPGGAGFAER 688
>gi|258650982|ref|YP_003200138.1| DEAD/DEAH box helicase [Nakamurella multipartita DSM 44233]
gi|258554207|gb|ACV77149.1| DEAD/DEAH box helicase domain protein [Nakamurella multipartita DSM
44233]
Length = 790
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 247/757 (32%), Positives = 383/757 (50%), Gaps = 61/757 (8%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
HV + + P + AL++ GI + ++HQ + + G +VV++T T+S
Sbjct: 10 HVRRLPRAAGSPAQWPGWTPPGVRDALRTAGIEQPWTHQVAAAQLAHDGHDVVLSTGTAS 69
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTT 341
GKSL Y+LP L A+ +D ++ LY+ PTKALA DQL L + + VYDGDT
Sbjct: 70 GKSLGYHLPALTAIENDPRTTVLYLAPTKALAADQLGVLTGLAVP---GLRPAVYDGDTP 126
Query: 342 QKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRF 401
+ DR W R +A L+TNPDMLH+ +LP+H + R L F
Sbjct: 127 RDDRDWARGHANWLLTNPDMLHLGLLPHHSAWDRFWRRLA-------------------F 167
Query: 402 VVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLST 461
VV+DE HAY+G FG H AL+LRRL R+ + +Y S P FV ++AT+A P+ L
Sbjct: 168 VVVDECHAYRGVFGSHVALVLRRLIRV-ARLYRSSPVFVLASATAAEPQVSAQRLIG-RP 225
Query: 462 LELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMD---------DTRNAA-------- 504
+ + DGS FVLW P + ++ D DT +
Sbjct: 226 VRAVTQDGSARPAADFVLWTPGAAGSDPIDSDSAGSDSADSDSTGSDTPESGIEQAAQPS 285
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYR 564
+TS+P +E + L A++V G R + F RSR+ E V R L AP L + YR
Sbjct: 286 RRTSAP-AEAARLMADLVAGGARTLTFVRSRQGAEQVALAARRRLRRIAPDLASRVAAYR 344
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQA--- 621
GY+ EDRR +ER G+L G+A+TNALELGID+ +D + G+PG++A+LWQQA
Sbjct: 345 GGYLPEDRRELERALDSGELLGLASTNALELGIDIAGLDAAIITGYPGTLAALWQQAGRA 404
Query: 622 GRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALE 681
GR G R +L ++VA E PLD Y +++PE +F P+E ID N VL HL CAA E
Sbjct: 405 GRGGASGRRALVIFVAREDPLDTYLVRHPEAVFDRPVESTVIDPTNPFVLGPHLTCAAAE 464
Query: 682 HPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAI 741
H L+ D FG + + ++ S + GH P+ + +R
Sbjct: 465 HHLT-PEDLDLFGGPAARPVL---DQLLDRRILRRRPSGWFWVNPGH---PAQRVDLRGS 517
Query: 742 ESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADL 801
+ + ++D S +L ++ +A V+ GAV++H+G +Y+V EL+L + +A +
Sbjct: 518 GAGQIAIVDADSGRLLGTVDAHRAPSCVHTGAVHLHRGESYVVDELDLQAGVATVRAGRP 577
Query: 802 KYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIF 861
+ T R + + + G + S+ + +TT G+ R R +G +
Sbjct: 578 DWTTVARSVSSVSMVG------PQRSRPAGRQVRVGVGPVALTTQVVGYLRR-RPTGEVL 630
Query: 862 DTVELYLPKYSYESQAVWIQVPQ-SVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFS 920
D V L LP+++ ++AVW V + +++A ++ + LHAA HA + ++P++ C+
Sbjct: 631 DQVPLELPQHTLPTRAVWYTVSRAALRAAGVRDAAIPGALHAAEHAAIGLLPLFAGCDRM 690
Query: 921 DLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTD 957
D+ H P +L+YD +PGG G + + D
Sbjct: 691 DIGGLSTAAHPDTGEPT-VLVYDGYPGGAGFADRGYD 726
>gi|158312177|ref|YP_001504685.1| DEAD/DEAH box helicase [Frankia sp. EAN1pec]
gi|158107582|gb|ABW09779.1| DEAD/DEAH box helicase domain protein [Frankia sp. EAN1pec]
Length = 815
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 258/764 (33%), Positives = 390/764 (51%), Gaps = 76/764 (9%)
Query: 219 QMVHVEDISARK---AVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVV 275
+ HVE + AR+ A E D LL S L++ GI + ++HQ E+ A+ G+ VV+
Sbjct: 30 NITHVESVPARRGQPAAWPEWADPLL---VSRLRAAGIEQPWTHQVEAARAAHEGRGVVL 86
Query: 276 ATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGV 335
AT T+SGKS+ Y LPVL L + SS A+Y+ PTKALA DQLR++ ++ +
Sbjct: 87 ATGTASGKSVGYLLPVLTRLLAEPSSRAIYLAPTKALANDQLRSVRSLMLT---GVRAST 143
Query: 336 YDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLI 395
YDGDT +R W+R +A L++TNPDMLH ILP H +++ L LR
Sbjct: 144 YDGDTPGPEREWVRAHATLVLTNPDMLHRGILPAHRRWAPFLRGLR-------------- 189
Query: 396 FLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCME 455
FV++DE H Y+G FG H A ILRRL R+C+ YG+ P FV ++AT A+P
Sbjct: 190 -----FVIVDECHGYRGVFGAHVAQILRRLRRVCAR-YGTRPVFVLASATVADPGLSASR 243
Query: 456 LANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTR--------NAANKT 507
L + + + SP F L+ P L + T D T +
Sbjct: 244 LTGVDVDVVDADA-SPRGPMDFALYEP-PLLGVRAGRPSTPADGTEVGGPDVDGAGVDGA 301
Query: 508 SSPI--------------SEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETA 553
+P+ +E + L A++V G+R + F RSR+ E+V + R L E A
Sbjct: 302 GAPVPHGENDAPVRRAATAESADLLADLVTEGVRTLVFVRSRRAAEVVAAAARRGLGEAA 361
Query: 554 PHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGS 613
P LV+ + YRAGY+ E+RR +E G+L GVAAT+ALELG+D+ +D T+ GFPG+
Sbjct: 362 PELVERVAAYRAGYLPEERRSLEGRLRTGELLGVAATSALELGVDISGLDATVIAGFPGT 421
Query: 614 IASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQ 673
+ASLWQQAGR+GR + +LAV VA + PLD Y + +PE +F P+E D N VL
Sbjct: 422 LASLWQQAGRAGRTGQAALAVLVARDDPLDTYLVHHPEAVFGRPVEASVFDPDNPYVLMP 481
Query: 674 HLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPS 733
HL CAA E PL+ D + FG G + + L RG L P+ F H
Sbjct: 482 HLECAASELPLTE-DDLELFGPGARAAVDDLVRRGRLRRRPT-----GWFWTQRHRP--- 532
Query: 734 HTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKI 793
+ IR + +++ + +L ++ + + V+ GAVY+HQG +++V EL+L +
Sbjct: 533 -DVDIRGVGGPPVRIVETATGRLLGTVDAATSHSTVHAGAVYLHQGASFIVTELDLDDAV 591
Query: 794 ALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRL 853
A + A + T R++TDI V + + + + ++ T + VT F R
Sbjct: 592 AFVEAATPDWATVAREHTDIRVV--ESTRSARFADVEIHLGTVE-----VTNQVIAFQRR 644
Query: 854 WRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVE-QNFSFRSGLHAASHALLHVVP 912
+G + L LP ++AVW V + A + + +HAA HA + ++P
Sbjct: 645 RLTTGEVLGQEPLDLPPRQLRTRAVWYTVTDELLAAAQIEPAEVPGAVHAAEHAAIGLLP 704
Query: 913 IYVRCNFSDLAPECPN--PHDSRYFPERILLYDRHPGGTGVSKQ 954
++ C+ D+ + P R + +YD H GG G +++
Sbjct: 705 LFATCDRWDIGGVSTDLHPDTGRT---SVFVYDGHAGGAGFAER 745
>gi|331694284|ref|YP_004330523.1| helicase/secretion DEAH-box helicase [Pseudonocardia dioxanivorans
CB1190]
gi|326948973|gb|AEA22670.1| helicase/secretion neighborhood putative DEAH-box helicase
[Pseudonocardia dioxanivorans CB1190]
Length = 783
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 244/738 (33%), Positives = 378/738 (51%), Gaps = 57/738 (7%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
H + AR P + AL++ GI + ++HQ E + AG++VVVAT T+S
Sbjct: 39 HSVQLPARPGRPAAWPGWVPAVVVDALRAHGIDRPWTHQVEGAELAHAGRDVVVATGTAS 98
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTT 341
GKSL Y LPVL D ++ALY+ PTKALA DQLRAL A+ + DGDT
Sbjct: 99 GKSLVYQLPVLTRFVADRRATALYLSPTKALAADQLRALEALDVP---DVRATTVDGDTP 155
Query: 342 QKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRF 401
++R W R NAR + +NPDMLH SILP H ++ L L +
Sbjct: 156 AEERDWARRNARWIYSNPDMLHRSILPRHASWATFLRRLS-------------------Y 196
Query: 402 VVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLST 461
VV+DE H Y+G FG H AL+LRRL + YG+ P+ V ++AT A+P L
Sbjct: 197 VVVDECHTYRGVFGSHVALLLRRLL-RVAARYGARPTIVLASATVADPGPFATVLTG-RD 254
Query: 462 LELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEM 521
+ + +DGSP + + LW P +L + + NAA + +E + + A++
Sbjct: 255 VAAVTDDGSPRSARTVALWEP-----PLLPELSGE-----NAAPVRRAAGTEAARMLADL 304
Query: 522 VQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFG 581
V G R +AF RSR+ EL R +L E AP LV + YR+GY+ E+RR +E G
Sbjct: 305 VVEGARTLAFVRSRRGAELTAMGARRLLAEAAPELVGRVESYRSGYLPEERRELEAALAG 364
Query: 582 GKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGP 641
G+L GVA+TNALELG+D+ +D + GFPG+ AS WQQAGR+GR +L V VA + P
Sbjct: 365 GRLLGVASTNALELGMDIAGLDAVVVAGFPGTRASFWQQAGRAGRAAEEALVVLVARDDP 424
Query: 642 LDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLI-YDEKYFGSGLSSG 700
+D Y + +P+ L +P+E C +D N VL HL CAA E PL+ D + G+ +
Sbjct: 425 MDTYLVHHPDALLGAPVERCVLDPANPYVLAPHLACAAAELPLTAADLDGVFAGTPAEAV 484
Query: 701 ITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEI 760
+ L + G L P+ + + + P+ ++ IR + +++ + +L +
Sbjct: 485 LDALVDDGVLRRRPT------GWFWPSASEWPASSVDIRGSGLGQIALVEAGTGRMLGTV 538
Query: 761 EESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNN 820
+ A + GAVY+H+G +Y+V L+L + +AL + + T R D+ +
Sbjct: 539 DAGSAPATAHPGAVYLHRGESYVVDSLDLDAGLALVHPDNPDWRTDARSTADVEI----- 593
Query: 821 AYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRG-SGIIFDTVELYLPKYSYESQAVW 879
++ + + VTT G+ R R G + +TV L +P+ + +++AVW
Sbjct: 594 --VAELCRSEHGPVGVSYGETRVTTQVVGYQR--RALDGRVLETVPLDMPEQTLDTRAVW 649
Query: 880 IQVPQSVKA---VVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFP 936
+ + A +V LHAA HA + ++P++ C+ D+ H P
Sbjct: 650 YTIDDAALADAGIVPARIP--GALHAAEHAAIGLLPLFAICDRWDIGGMSTALHPQTGLP 707
Query: 937 ERILLYDRHPGGTGVSKQ 954
+ ++D HPGG G++++
Sbjct: 708 T-VFVHDGHPGGAGLAER 724
>gi|378549003|ref|ZP_09824219.1| hypothetical protein CCH26_02910 [Citricoccus sp. CH26A]
Length = 787
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 249/749 (33%), Positives = 369/749 (49%), Gaps = 69/749 (9%)
Query: 221 VHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTS 280
+HV + R A P+ + A +G+ + + HQ E+ + +G++VV+AT T+
Sbjct: 1 MHVRYLPERPARTEPWPEGTPEGLVQAFGGSGVLEPWHHQVEAARLAASGRHVVLATGTA 60
Query: 281 SGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDT 340
SGKSL Y L AL+ D + + LY+ PTKAL DQL A A+ + + YDGDT
Sbjct: 61 SGKSLGYQLAAGTALAEDPAGTVLYLSPTKALGADQLVAWRALARDGAGWLRPSPYDGDT 120
Query: 341 TQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIR 400
DR W RD+A +L+TNPDMLH+ ILP+H ++ R F +R
Sbjct: 121 APADRTWARDHANVLLTNPDMLHIGILPHHERWGRF-------------------FRRLR 161
Query: 401 FVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLS 460
+V++DEAH Y+G FG H A++LRRL R+C+H YG+ P F+ ++ATSA+P L
Sbjct: 162 YVIVDEAHVYRGVFGSHVAVLLRRLSRVCAH-YGAGPVFIGASATSADPAGSFTRLIGAD 220
Query: 461 TLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTR--NAANKTSSPISEVSYLF 518
+ + + D SP W P ++ D R N A S +E + +
Sbjct: 221 AVAVTE-DASPHGAVTVGFWEP-------------ELTDARGENGAPVRRSATAESAGMM 266
Query: 519 AEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERD 578
A++ G R IAF RSR+ E + S + L E P L + YRAGY+ E+RR +E
Sbjct: 267 ADLAAAGTRTIAFIRSRRGAEAMASAAKRELAEVDPSLPPRVAAYRAGYLPEERREVETA 326
Query: 579 FFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAF 638
G+L GVA+T ALELGID+ +D L G+PG+ AS +QQ GR+GR + SLAVYVA
Sbjct: 327 LRTGRLLGVASTPALELGIDIAGLDAVLVAGWPGTRASFFQQVGRAGRAGQESLAVYVAG 386
Query: 639 EGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLS 698
+ PLD + + +PE +F+ +E D N +L HL AA E PL + G
Sbjct: 387 DDPLDTFVVHHPEAVFELAVEDSVTDPSNPHILAPHLCAAAAELPLVPDGLAAFGEPGHV 446
Query: 699 SG-ITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVL 757
G + L GYL P+ + H + + +S+R ++ID + VL
Sbjct: 447 RGLVDRLVTEGYLRRRPA-------GWFWTHPEHAAALVSLRDDGGGPVDIIDADTGAVL 499
Query: 758 EEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHV-- 815
+ + +Q + GAVY+HQ TYLV++L+ + L +A +Y+T+ RD T+I V
Sbjct: 500 GTMGSPQTHYQAHPGAVYVHQDRTYLVEDLDEDAHAVLVTRAWPEYYTQARDITEIEVLD 559
Query: 816 -----SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPK 870
GG+ + T K VTT F R SG + L L
Sbjct: 560 TVRRRDGGDLQWCTGPVK--------------VTTQVVSFQRKALVSGEVLGEEPLELSA 605
Query: 871 YSYESQAVWIQVPQS--VKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPN 928
+ AVW P V A + + LHAA HA++ ++P+ + D+
Sbjct: 606 RELFTTAVWFHCPSEHLVAAGLTMD-RLPGALHAAEHAMIGLLPLVASNDRWDIGGVSMA 664
Query: 929 PHDSRYFPERILLYDRHPGGTGVSKQVTD 957
H P + +YD HPGG G +++ D
Sbjct: 665 LHPDTGEPS-VFVYDGHPGGAGFAERGFD 692
>gi|345849040|ref|ZP_08802056.1| ATP-dependent RNA helicase [Streptomyces zinciresistens K42]
gi|345639459|gb|EGX60950.1| ATP-dependent RNA helicase [Streptomyces zinciresistens K42]
Length = 874
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 254/763 (33%), Positives = 387/763 (50%), Gaps = 55/763 (7%)
Query: 199 SQLLPLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYS 258
S++ P +++ L G ++ H E + R+ PD + +A++ GI ++
Sbjct: 16 SRVDPGTVLDRLASGPDRASRITHTEHVPPREGRHAVWPDRIRAEVVAAVQKAGIDHPWA 75
Query: 259 HQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL------SHDLSSSALYMFPTKAL 312
HQA + +L G++VVVAT T+SGKSL Y +PVL L + ++ALY+ PTKAL
Sbjct: 76 HQARAAEHALDGESVVVATGTASGKSLAYLVPVLSTLLDGAEAPNGRGATALYLAPTKAL 135
Query: 313 AQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQ 372
A DQ R++ +++ S+ VYDGDT ++R W+R A ++TNPDMLH ILP H +
Sbjct: 136 AADQCRSVKELSQPLGHSVRPAVYDGDTPFEEREWVRQYATYVLTNPDMLHRGILPSHPR 195
Query: 373 FSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHV 432
+S L L+ +VVIDE H Y+G FG H A +LRRL RLC+
Sbjct: 196 WSSFLKALK-------------------YVVIDECHTYRGVFGSHVAQVLRRLRRLCAR- 235
Query: 433 YGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNK 492
YG+ P F+ ++AT+A+P L L +E + +D SP + +F LW P
Sbjct: 236 YGASPVFLLASATAADPAVAGRRLTGLPVVE-VADDASPRGELVFALWEP---------- 284
Query: 493 SQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEET 552
T++ + A + ++ +E + L ++ G+R +AF RSR+ EL+ +E L
Sbjct: 285 PLTELQGEKGAPVRRTA-TAETADLLTDLAVQGVRSVAFVRSRRGAELISVIAQERLAAV 343
Query: 553 APHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPG 612
L + YR GY+ E+RR +E+ G+L G++AT ALELGIDV +D L G+PG
Sbjct: 344 DRSLARRVAAYRGGYLPEERRALEQALHSGELLGLSATTALELGIDVSGLDAVLISGYPG 403
Query: 613 SIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLE 672
+ ASLWQQAGR+GR + +LAV VA + PLD Y + +PE LF P+E +D N VL
Sbjct: 404 TRASLWQQAGRAGRSGQGALAVLVARDDPLDTYLVHHPEALFDQPVESTVLDPDNPYVLA 463
Query: 673 QHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMP 732
HL AA E PL+ D FG + L+ L + + + E+
Sbjct: 464 PHLCAAAAEIPLTE-EDLPLFGPAAEGLLPQLEAARLLR------RRTRGWHWTRRERAA 516
Query: 733 SHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSK 792
T IR ++++ + +L ++ A V+EGAV++HQG TYLV+ L+L
Sbjct: 517 DLT-DIRGGGGRPVQIVEAGTGRLLGTVDAGAAHGSVHEGAVHLHQGRTYLVRSLDLEDS 575
Query: 793 IALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYR 852
+AL ++A Y T RD T I V +L + + VT F R
Sbjct: 576 VALVEQASPSYSTVARDTTAISVL--ETDTEVPWGDGRLCYGSVE-----VTNQVVSFLR 628
Query: 853 LWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSG-LHAASHALLHVV 911
+G + +L LP + ++AVW V + N G LHAA HA + ++
Sbjct: 629 RRLITGEVLGETKLDLPPRTLRTRAVWWTVTEDQLDEARINPEILGGALHAAEHASIGLL 688
Query: 912 PIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
P++ C+ D+ H P + +YD HPGG G +++
Sbjct: 689 PLFATCDRWDIGGVSVPLHPDTLLPT-VFVYDGHPGGAGFAER 730
>gi|375097613|ref|ZP_09743878.1| helicase/secretion neighborhood putative DEAH-box helicase
[Saccharomonospora marina XMU15]
gi|374658346|gb|EHR53179.1| helicase/secretion neighborhood putative DEAH-box helicase
[Saccharomonospora marina XMU15]
Length = 801
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 245/743 (32%), Positives = 372/743 (50%), Gaps = 58/743 (7%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+ HV + R P+ + AL+ +G+ + ++HQ E+ + +G +VV++T T
Sbjct: 29 ITHVARLPERLPRHASWPEWACADVVEALRRSGVQRPWTHQVEAASLAWSGHDVVISTGT 88
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGD 339
+SGKS+ Y LPVL +L D ++ALY+ PTKAL DQLR++ +M D + YDGD
Sbjct: 89 ASGKSMAYQLPVLSSLLSDPKATALYLAPTKALGADQLRSVRSM--GLD-GVRPASYDGD 145
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T +R W+RD+AR + TNPDMLH +L H +++R F +
Sbjct: 146 TPVPERNWVRDHARWVFTNPDMLHRGVLSAHARWARF-------------------FRKL 186
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
+VV+DE H Y+G FG H AL+LRRL R+ H YG+DP FV ++AT+A P E L
Sbjct: 187 TYVVVDECHGYRGVFGSHVALLLRRLRRVARH-YGADPVFVLASATTAQPAEFAARLTGA 245
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
T ++ +D SP + LW P +L++ + N A S +E + + A
Sbjct: 246 PTAAVV-DDASPRGARTVALWEP-----PLLDELSGE-----NGAPVRRSAGAEAARILA 294
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDF 579
E+V G R +AF RSR+ EL + IL E L + YRAGY+ E+RR +E
Sbjct: 295 ELVVEGARTLAFVRSRRGAELTALGAKRILTEVDAELSGRVAAYRAGYLPEERRALEAAL 354
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFE 639
G+L GVA TNALELG+D+ +D + G+PG++AS WQQ+GR+GR +L ++VA +
Sbjct: 355 LSGELLGVATTNALELGVDIAGLDAVVLAGYPGTLASFWQQSGRAGRAGADALVLFVARD 414
Query: 640 GPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSS 699
PLD Y + +P L + P+E +D N VL L CAA E PL + + G
Sbjct: 415 DPLDTYLVHHPSALLERPVETTVLDPANPYVLAPQLACAAAELPLRAEELDAFGGDVARE 474
Query: 700 GITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEE 759
+ L L PS Y P H + IR E+ V++ ++ +L
Sbjct: 475 VVDGLVADRMLRRRPS-------GWYWTSRNRPQHEVDIRGSGGEQVAVVEADTSRLLGT 527
Query: 760 IEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGN 819
++ A V+ GAVY+HQG +Y+V EL+L S +AL D ++ T R+ DI
Sbjct: 528 VDPGGACHTVHPGAVYLHQGSSYVVDELDLESGLALVHAEDPEWNTSAREVVDI------ 581
Query: 820 NAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVW 879
A + K T VT+ G+ R SG + D V L LP+ ++AVW
Sbjct: 582 -AVLDTVHKQAYDGVTVGLGEVAVTSQVVGYLRRLP-SGEVIDHVPLDLPERVLRTRAVW 639
Query: 880 IQVPQSV--------KAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHD 931
+ ++ + LHAA HA + ++P++ C+ D+ H
Sbjct: 640 YTISDALLSADCRAPGCAGLEPARIPGALHAAEHAAIGLLPLFATCDRWDIGGVSTALH- 698
Query: 932 SRYFPERILLYDRHPGGTGVSKQ 954
+ + ++D HPGG G + +
Sbjct: 699 ADTGEATVFVHDGHPGGAGFADR 721
>gi|119714635|ref|YP_921600.1| DEAD/DEAH box helicase [Nocardioides sp. JS614]
gi|119535296|gb|ABL79913.1| DEAD/DEAH box helicase domain protein [Nocardioides sp. JS614]
Length = 778
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 249/761 (32%), Positives = 377/761 (49%), Gaps = 67/761 (8%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
++VE L G + ++ H+E + AR A + P + +A + G+++ + HQ +
Sbjct: 17 DVVERLVAAPGREDRLCHLEVLPARAARHADWPAWADPDVVAAFAARGVARPWQHQVVAA 76
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSH------DLSSSALYMFPTKALAQDQLR 318
A+ AG++VV+AT T+SGKSL Y LP L L ++ LY+ PTKALAQDQL
Sbjct: 77 EAAHAGQHVVLATGTASGKSLAYQLPALSTLRGSRGPRGQRGATVLYLAPTKALAQDQLA 136
Query: 319 ALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILS 378
L + + +DGD++++ R W RD+ ++TNPDMLH S+LP H +++ L
Sbjct: 137 GL----SGLGLDLRVTTHDGDSSREQRDWARDHGEYVLTNPDMLHRSLLPGHSRWAGFLG 192
Query: 379 NLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPS 438
L+ +VV+DE H Y+G FG H A +LRRL R+C+ YG+ P+
Sbjct: 193 ALQ-------------------YVVVDECHHYRGVFGAHVAHVLRRLRRVCA-TYGASPT 232
Query: 439 FVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMD 498
FV ++AT A P L L ++ + D SP + +LW P + N +
Sbjct: 233 FVLASATVAEPEAAARRLTGLD-VQAVTADHSPRGRVSLLLWEPPFTSFTGENGAPV--- 288
Query: 499 DTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVD 558
R AA+ SE + L A++V +R +AF RSR+ E V E+L + P L
Sbjct: 289 --RRAAS------SETADLLADLVAEDVRTLAFIRSRRGAEQVAMTAAELLTDVDPVLAG 340
Query: 559 SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLW 618
+ YR GY+ E+RR IE G++ G+AATNALELGID+ +D + GFPG+ A+LW
Sbjct: 341 RVASYRGGYLPEERRAIEDSLRRGEITGLAATNALELGIDISGLDAVVMAGFPGTRAALW 400
Query: 619 QQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCA 678
QQ GR+GR + +LAV VA + PLD Y + +PE L P+E D N VL HL A
Sbjct: 401 QQVGRAGRGAQDALAVLVARDDPLDTYLVTHPEALLGRPVEATVFDPSNPYVLGPHLCAA 460
Query: 679 ALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISI 738
A E PL+ D FG + L G L P + + S I
Sbjct: 461 AHEAPLTEA-DLPLFGPTAREVVDALTEGGLLRRRPR-------GWFWTDRRRASDLADI 512
Query: 739 RAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQK 798
R+ ++++ ++ V+ ++ S A + GAVY+H+G T+LV L+L ++A+ Q+
Sbjct: 513 RSTGGAPVQLVEAETGRVIGTVDASSAHGTAHPGAVYVHRGETWLVCSLDLEDRVAVIQR 572
Query: 799 ADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSG 858
A Y T R+ T+I V A + + VT F + + G
Sbjct: 573 AQPDYSTTAREVTEISVVREREHTAWGDCRLSFGEV-------DVTHQVVSFLKRRQPGG 625
Query: 859 IIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFR---SGLHAASHALLHVVPIYV 915
+ L LP+ S + AVW VP AV E S R HAA H + ++P++
Sbjct: 626 DVLGEEPLDLPERSLRTAAVWWTVPD--HAVTEAGLSGRDLPGAAHAAEHCSIGLLPLFA 683
Query: 916 RCNFSDLA--PECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
C+ D+ +P R + +YD HPGG G +++
Sbjct: 684 TCDRWDIGGVSTAVHPDTGRLT---VFVYDGHPGGAGFAER 721
>gi|220932299|ref|YP_002509207.1| DEAD/DEAH box helicase [Halothermothrix orenii H 168]
gi|219993609|gb|ACL70212.1| DEAD/DEAH box helicase domain protein [Halothermothrix orenii H
168]
Length = 751
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 251/767 (32%), Positives = 387/767 (50%), Gaps = 88/767 (11%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
++ ++L+ + + + + I ++A V+ P L L+ GI+ LYSHQAES
Sbjct: 5 QIKDYLKNSDKYKNLITYWKHIPPKEAEFVDFPGELDPGLAGVLREKGITSLYSHQAESY 64
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
A G + V+ T T+SGK+LCYNLPVL+ + D S+ ALY+FPTKAL+QDQL L +
Sbjct: 65 RAIKDGNHTVIVTPTASGKTLCYNLPVLDDILKDKSNRALYLFPTKALSQDQLAELYDLI 124
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
D I YDGDT + R +R + ++ITNPDMLH ILP+H ++ ++ NL
Sbjct: 125 SRLDEGIKTYTYDGDTQVQARKNIRQSGHIVITNPDMLHTGILPHHTKWIKLFENL---- 180
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
++VVIDE H Y+G FG H A ++RRL R+C YGSDP F+ S+A
Sbjct: 181 ---------------KYVVIDEIHTYRGVFGSHVANVIRRLKRICK-FYGSDPVFICSSA 224
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T ANPRE +L + LI +G+P + F+ +NP V+N+
Sbjct: 225 TIANPREFAGKLIG-DKVHLIDKNGAPRGPRDFIFFNP-----PVINRE----------L 268
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYR 564
S + E +++ ++ I F RSR + E++LSY +E + I YR
Sbjct: 269 GIRRSYVLECKSFGKLFLENDIKTIVFARSRLVTEVILSYLKEHFKGRK-----EIRGYR 323
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
GY+ +RR IE+ G + GV +TNALELGID+G +DV + G+PG+IAS WQQAGR+
Sbjct: 324 GGYLPGERREIEKGLREGDILGVVSTNALELGIDIGQLDVCIMGGYPGTIASTWQQAGRA 383
Query: 625 GRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
GRR SLAV +A PLDQ+ + PE F+ P E I+ N +L H+ CAA E P
Sbjct: 384 GRRNGHSLAVLIASSSPLDQFIVNQPEYFFEQPPENALINPDNLYILVSHIKCAAFELP- 442
Query: 685 SLIYDEKYFGSGLSSGI-TTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIES 743
F G + G+ TT + YL + L + ++ E+ P+ IS+R+
Sbjct: 443 --------FEDGETFGVETTDEILAYLEEEKILRYRNGKWYWMA-ERYPAEDISLRSASP 493
Query: 744 ERYEVID---MQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKAD 800
+ VID V+ +++ A +++ A+Y+H+G Y VKEL+ K A ++ +
Sbjct: 494 HDFAVIDATRQSKPRVIGKVDHFSALTTIHKDAIYLHEGKQYQVKELDYDGKKAYVKQVN 553
Query: 801 LKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQAL-------ACTVTTTWFGFYRL 853
+ Y+T D+ V D+ Q L + T F +
Sbjct: 554 VNYYTDASLAVDLRVL------------DEFDNKECQGLRIEHGEVVVSAKATMFKKVKF 601
Query: 854 WRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFS---FRSGLHAASHALLHV 910
+ + + LP+ + + W P +E+ F SGL S+ L+++
Sbjct: 602 NTHENVGYGDIN--LPEVEMHTTSYWFSFP----GYLEERFGRKELESGLLGLSNLLVNI 655
Query: 911 VPIYVRCNFSDLAP--ECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
PIY+ C+ D+ + +P+ R I +YD +PGG G+S+++
Sbjct: 656 APIYLMCDPGDIKSTVQVKSPYTGR---PTIFVYDSYPGGVGMSEKL 699
>gi|358445112|ref|ZP_09155725.1| putative ATP-dependent helicase [Corynebacterium casei UCMA 3821]
gi|356608915|emb|CCE53959.1| putative ATP-dependent helicase [Corynebacterium casei UCMA 3821]
Length = 780
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 251/753 (33%), Positives = 389/753 (51%), Gaps = 61/753 (8%)
Query: 216 SQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVV 275
S + H A++A + P L + I++LY+HQ E A+ AG +VVV
Sbjct: 16 STSSLTHSVTQPAKEARYADWPQWALPELVEKFQQREITQLYTHQREVADAAFAGIDVVV 75
Query: 276 ATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFD--ASIDI 333
AT TSSGKSL Y LP+L L+ D ++ ALY+ PTKAL DQL A++ +TK D +SI
Sbjct: 76 ATGTSSGKSLGYQLPILTRLAEDDTACALYLTPTKALGSDQLLAIMELTKGIDKLSSIIP 135
Query: 334 GVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVY 393
YDGDT + R +RD+AR + +NPDM+HMSIL H +++R L +L+
Sbjct: 136 SPYDGDTPSEARAGIRDHARFVFSNPDMVHMSILAAHERWTRFLRHLQ------------ 183
Query: 394 LIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHC 453
F+VIDE H+Y+G FG H AL+LRRL RL YG+ P+ + ++AT +P +H
Sbjct: 184 -------FIVIDECHSYRGVFGAHVALVLRRLLRL-CARYGAHPTIIGASATMNDPADHM 235
Query: 454 MELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISE 513
L + ++ + DG+P ++ LW P + ++ D N A + +E
Sbjct: 236 KRLTSRVGIKEVTEDGAPTGERTIALWEP-----GFIEGAEGD-----NGAPVRRAATTE 285
Query: 514 VSYLFAEMVQHGLRCIAFCRSRKLCELV-LSYTREILEETA-PHLVDSICVYRAGYVAED 571
+ + A +V G R + F RSR+ E V L E+ A P I YRAGY+AED
Sbjct: 286 AAEMMAAIVAEGARTMTFVRSRRSAEQVALRCQAELSGGLARPDFAQRIASYRAGYLAED 345
Query: 572 RRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPS 631
RR++E+ G+L GVA T+ALELGIDVG +D + GFPG++AS WQQAGR+GRR + S
Sbjct: 346 RRKLEKALDNGELLGVATTSALELGIDVGGLDAVVTAGFPGTVASFWQQAGRAGRRGQGS 405
Query: 632 LAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLS-----L 686
L V VA + P+D Y + P+ L P+E + +N +L H+ CA +E PL+
Sbjct: 406 LVVLVARDEPMDTYLVHNPDALLGRPVEASVFNPENPYILYGHMYCACIEQPLTDAEVRF 465
Query: 687 IYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERY 746
+ E+ + G+ + +G+ + P LD ++ H + +S+R
Sbjct: 466 YHAEQVIQALAQEGLIRRRPQGWFAV-PQLD--GELRPETAHSQ-----VSLRGGAGNDV 517
Query: 747 EVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTK 806
++D +L ++ ++A QV+ GAVY+HQG ++++ +L++ IA + +Y T+
Sbjct: 518 LIMDTSDGRLLGTVDGARASSQVHPGAVYLHQGESFVIDDLDIEEGIAFATPGEPEYSTQ 577
Query: 807 TRDYTDIHVSGGNNAYATKISKDQLTKTTAQALAC----TVTTTWFGFYRLWRGSGIIFD 862
TDI + N +D+L A VT G++R G D
Sbjct: 578 PNATTDIAIMSAAN-------EDELVDYGGGVWAALVDVEVTDQVVGYFRKL-ADGTTSD 629
Query: 863 TVELYLPKYSYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSD 921
L LP+ ++AV V P +++A+ + LHAA HA + ++P+ C+ D
Sbjct: 630 LFPLDLPEQRLRTRAVAYTVDPLALEAMGIRAADIPGALHAAEHAAIGLLPLIATCDRWD 689
Query: 922 LAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
+ H P + +YD H GG G +++
Sbjct: 690 IGGVSTALHQDTQMPT-VFVYDGHSGGAGFAEE 721
>gi|21228714|ref|NP_634636.1| ATP-dependent helicase [Methanosarcina mazei Go1]
gi|20907222|gb|AAM32308.1| putative ATP-dependent helicase [Methanosarcina mazei Go1]
Length = 912
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 248/758 (32%), Positives = 390/758 (51%), Gaps = 57/758 (7%)
Query: 206 MVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIM 265
++ ++ I + Q+VH+E+ AR A P L K+AL TGI LYSHQAE+I
Sbjct: 6 LLNEIKASIRYENQIVHIEETPARDACYA--PLELEVRIKAALSGTGIEALYSHQAEAIE 63
Query: 266 ASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTK 325
GK++V+ T T+SGKSL Y +PV EA+ D +++LY+ P AL DQL+A L
Sbjct: 64 KVREGKDLVLCTSTASGKSLTYMIPVFEAVLKDPEATSLYISPLNALVNDQLKAFLEFEG 123
Query: 326 AFDASIDIGVYDGDTTQKDRMWLRDN-ARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
A ++ I Y G + + +RD ++ TNP+M+HMS L +H + R SNLR
Sbjct: 124 ALNSGAGIARYTGALSADQKRKIRDGKTNIVFTNPEMVHMSFLAWHHLWRRFFSNLR--- 180
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
F+V+DE+H Y+G G + A +LRRL R+ + YG+ P F+ +A
Sbjct: 181 ----------------FIVVDESHYYRGVIGSNMANVLRRLLRVAEY-YGASPQFICCSA 223
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T NP +H L + +++N+GS + FV WNP + + R
Sbjct: 224 TIGNPEDHTETLLGREAV-VVENNGSLQGPQKFVFWNPPLYM------------NGRGCT 270
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYR 564
+ SS SE S LF VQ GL+ +AF RSR+ E + E+L + L +IC YR
Sbjct: 271 VRRSS-FSEASALFTRAVQAGLQTLAFTRSRQGVERMYRTCMELLRDR--ELPSAICPYR 327
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
+GY +R IER G+L GV +TNALELGID+G +DV + G+PG++ S QQAGR+
Sbjct: 328 SGYFDREREEIERKMNSGELRGVISTNALELGIDIGGLDVCILDGYPGTVMSARQQAGRA 387
Query: 625 GRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
GR SL + VA LDQY+M+ P F E ++ +N +L HL+CAA E PL
Sbjct: 388 GRSGNESLVLMVAGTNALDQYYMRNPADFFARSSENAVLNPKNPYILAGHLLCAAKEIPL 447
Query: 685 SLIYDEKYFGSGLSSGITTLKNRGYLS-SDPSLDSSAKIFEYIGHEKMPSHTISIRAIES 743
DEKYFG G S + L+ G L+ SD + ++ + + ++T S+ A E
Sbjct: 448 RE-SDEKYFGGGYSRVVELLEAEGLLAGSDMKYSTDPFPYKQVSLRGIDNNTYSLLAFEG 506
Query: 744 ERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKY 803
ER S + ++IEE+ AF + + GAVY+H+G ++ + ++ + K Y
Sbjct: 507 ER-------SFPIEKDIEETLAFRECHPGAVYIHRGESFYINRIDHEKREIHAIKTHDSY 559
Query: 804 FTKTRDYTDIHVSGGNNAYATK--ISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIF 861
+TK + + V YA K + ++ + VT G+ ++ S
Sbjct: 560 YTKPMIDSSVVV---QETYAAKPLLHAPEVEVGLGE---VEVTDRIAGYRKIRTHSDETM 613
Query: 862 DTVELYLPKYSYESQAVWIQVPQSVKAVV-EQNFSFRSGLHAASHALLHVVPIYVRCNFS 920
E+ +P + ++ A+W+++P ++ ++ + F G+HA HA++ + P+++ + S
Sbjct: 614 SAHEIEMPPITLQTVALWLKLPDRLQEMIGDHKLDFAGGIHAVEHAIISMYPLHLLVDRS 673
Query: 921 DLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDM 958
D+ H I +YD H GG G +++ D+
Sbjct: 674 DVGGVSTPSHPDLGSKSGIFIYDGHRGGVGYAEKGYDL 711
>gi|218290425|ref|ZP_03494555.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus
acidocaldarius LAA1]
gi|218239553|gb|EED06747.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus
acidocaldarius LAA1]
Length = 756
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 252/736 (34%), Positives = 380/736 (51%), Gaps = 67/736 (9%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
+ AR + P L +++L + GI +LY HQ E+ +G++VV+AT T+SGK+L
Sbjct: 26 MPARIGRYADFPAELHPELRASLAARGIERLYVHQREAWDLIQSGRDVVIATPTASGKTL 85
Query: 286 CYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDR 345
CYNLPVL+A+ D S ALY+FPTKALAQDQ+ L + + S+ YDGDT R
Sbjct: 86 CYNLPVLQAILRDPSVRALYVFPTKALAQDQVAELHDLVQNLKTSVHTFTYDGDTPVHAR 145
Query: 346 MWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVID 405
+R+ +++TNPDMLH +ILP+H ++ R+ NL R+VVID
Sbjct: 146 QKIREAGHIVVTNPDMLHAAILPHHTKWLRLFKNL-------------------RYVVID 186
Query: 406 EAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELI 465
EAH Y+G FG H A ++RRL RL S YG+ P F+F +AT ANP E L T ++
Sbjct: 187 EAHIYRGVFGSHVANVIRRLARLAS-FYGARPQFIFCSATIANPGELTSRLCGRET-AVV 244
Query: 466 QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHG 525
G+P +K +L+NP V++ S AA + L A ++QH
Sbjct: 245 SESGAPEGEKHVILYNP-----PVVDPSLGLRQSALRAARR----------LGARLLQHE 289
Query: 526 LRCIAFCRSRKLCELVLSYTREILEETAPHLVDS-ICVYRAGYVAEDRRRIERDFFGGKL 584
+ I F R+R EL+ SY R A LV S I YR GY+ +RR IER G++
Sbjct: 290 IPTILFARTRNQVELLASYLR----RDARDLVQSRIVSYRGGYLPNERRAIERGLREGQI 345
Query: 585 CGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQ 644
GV +TNALELG+D+G + + +G+PGS+AS QQ GR+GRR+ S A++VA LDQ
Sbjct: 346 LGVVSTNALELGVDIGSLQAAITVGYPGSVASTRQQMGRAGRRKGISAAIFVATSSALDQ 405
Query: 645 YFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGI-TT 703
+ +++PE L + E I N +L HL CAA E P S DE++ G+ TT
Sbjct: 406 WMVRHPEALLDASPEAARIYPDNLLILMDHLKCAAYELPFSA--DERF-------GVETT 456
Query: 704 LKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNE--VLEEIE 761
+ YL L +A + + MP+H +S+R+ E ++D ++ V+ E++
Sbjct: 457 DELLDYLVDMRVLHRAADGRYFYMADDMPAHAVSLRSAAQENVVIVDQSAHPPVVIGEMD 516
Query: 762 ESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNA 821
A ++E A+Y+HQ Y V++L+ + A + D Y+T + V N+
Sbjct: 517 RFSALTMLHEEAIYLHQSQMYQVEKLDFENGKAFVRPVDCDYYTDAELAVHLQVLEENH- 575
Query: 822 YATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQ 881
+ L T LA T T F +L + + ++YLP+ + W+
Sbjct: 576 ---HAEEGPLCHYTGD-LAVHATPTLFKKIKLETHENVGWG--KIYLPEAELHTSGYWVT 629
Query: 882 VPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSD--LAPECPNPHDSRYFPERI 939
+S + E + + L H L H V ++ C SD +A E +PH R +
Sbjct: 630 FDRSGWSASEDEWE--AALKGLGHVLKHAVALHAMCASSDVHVAVEVRDPHYGR---PSV 684
Query: 940 LLYDRHPGGTGVSKQV 955
+YD +PGG G++++V
Sbjct: 685 YVYDAYPGGVGIAERV 700
>gi|440700899|ref|ZP_20883127.1| putative DEAH-box helicase [Streptomyces turgidiscabies Car8]
gi|440276479|gb|ELP64731.1| putative DEAH-box helicase [Streptomyces turgidiscabies Car8]
Length = 799
Score = 388 bits (996), Expect = e-104, Method: Compositional matrix adjust.
Identities = 248/759 (32%), Positives = 387/759 (50%), Gaps = 55/759 (7%)
Query: 203 PLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAE 262
P +++ L G ++ H E + R PD + +A+++ GI ++HQA
Sbjct: 22 PGTILDRLTSGPSRASRITHTEHLPPRAGRHAVWPDRIRAEVVAAVQAAGIEHPWAHQAL 81
Query: 263 SIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL------SHDLSSSALYMFPTKALAQDQ 316
+ +L G NV+VAT T+SGKSL Y +PVL L + ++ALY+ PTKALA DQ
Sbjct: 82 AAEHALDGDNVIVATGTASGKSLAYLVPVLSRLLDGSEAPNGRGATALYLAPTKALAADQ 141
Query: 317 LRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRI 376
R++ +++ ++ VYDGDT ++R W+R A ++TNPDMLH ILP H +++
Sbjct: 142 RRSVKELSQPLGNAVRPAVYDGDTPVEEREWVRQYANYVLTNPDMLHRGILPSHPRWASF 201
Query: 377 LSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSD 436
L +L+ +VVIDE H Y+G FG H A +LRRL RLC+ YG+
Sbjct: 202 LKSLK-------------------YVVIDECHTYRGVFGSHVAQVLRRLRRLCAR-YGAS 241
Query: 437 PSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTD 496
P F+ ++AT+A P L L +E + +D SP + +F LW P T+
Sbjct: 242 PVFLLASATAAEPSVAAGRLTGLPVVE-VADDASPRGELVFALWEP----------PLTE 290
Query: 497 MDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHL 556
+ + A + ++ +E + L ++ G+R +AF RSR+ EL+ +E L E L
Sbjct: 291 LHGEKGAPVRRTA-TAETADLLTDLTVQGVRSVAFVRSRRGAELIAVIAQERLAEVDGSL 349
Query: 557 VDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIAS 616
+ YR GY+ E+RR +E+ G+L G+AAT ALELGIDV +D + G+PG+ AS
Sbjct: 350 ARRVAAYRGGYLPEERRALEQALHSGELLGLAATTALELGIDVSGLDAVVIAGYPGTRAS 409
Query: 617 LWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLV 676
LWQQAGR+GR + +LA+ VA + PLD + + +PE LF P+E +D N VL HL
Sbjct: 410 LWQQAGRAGRAGQGALAILVARDDPLDTFLVHHPEALFDQPVESTVLDPDNPYVLAPHLC 469
Query: 677 CAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTI 736
AA E PL + D FG ++ + L+ L + + E+ +
Sbjct: 470 AAAAESPL-VEEDLALFGPETAALLPQLEAAKLLR------RRTNAWHWTRRERA-ADLA 521
Query: 737 SIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALC 796
IR ++++ + +L ++ + V+EGAV++HQG TYLV+ L+L+ +AL
Sbjct: 522 DIRGGGGNPVQIVEEGTGRLLGTVDAGASHTAVHEGAVHLHQGRTYLVRSLDLTDSVALV 581
Query: 797 QKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRG 856
++A+ Y T RD T I V +L + + VT F R
Sbjct: 582 EEANPPYSTVARDTTSIAVL--ETDVEIPWGDGRLCYGSVE-----VTNQVVSFLRRRVI 634
Query: 857 SGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSG-LHAASHALLHVVPIYV 915
+G + +L LP + ++AVW V + N G LHAA HA + ++P++
Sbjct: 635 TGEVLGETKLDLPPRTLRTRAVWWTVTEDQLDAARINPEILGGALHAAEHASIGMLPLFA 694
Query: 916 RCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
C+ D+ H P + +YD HPGG G +++
Sbjct: 695 TCDRWDIGGVSVPLHPDTLLPT-VFVYDGHPGGAGFAER 732
>gi|410672316|ref|YP_006924687.1| DEAD/DEAH box helicase-like protein [Methanolobus psychrophilus
R15]
gi|409171444|gb|AFV25319.1| DEAD/DEAH box helicase-like protein [Methanolobus psychrophilus
R15]
Length = 929
Score = 388 bits (996), Expect = e-104, Method: Compositional matrix adjust.
Identities = 247/752 (32%), Positives = 386/752 (51%), Gaps = 55/752 (7%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E++ L+ +GQ+VHVE + AR+ V + L AL GI +LY+HQ E++
Sbjct: 5 ELINRLKASGRYEGQIVHVEKLPAREPVHSSL--ELKPLISYALGEKGIRQLYTHQTEAV 62
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
G+N+V++T T+SGKSLCY LP+ E L D ++ALY+ P AL DQL+ ++
Sbjct: 63 TKVREGRNIVLSTSTASGKSLCYMLPIFETLLDDPKATALYLSPLNALVNDQLQTFRDLS 122
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLR-DNARLLITNPDMLHMSILPYHGQFSRILSNLRLI 383
I I + G TQ ++ ++ N R+L TNPDMLHMS L + Q+ LSNL+
Sbjct: 123 DMMGLDIRIDKFIGTMTQAEKSSVKYGNPRILFTNPDMLHMSFLAWKHQWRGFLSNLK-- 180
Query: 384 AFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFST 443
F+V+DE+H+Y G G H A +LRRL R+C +YGS P ++ T
Sbjct: 181 -----------------FIVLDESHSYSGVMGSHMANLLRRLNRVC-ELYGSSPQYICCT 222
Query: 444 ATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNA 503
AT NP EH L L+ +D S + F+ WNP +S RN
Sbjct: 223 ATIGNPVEHAAALIGKEVC-LVDSDSSGRGAQSFIFWNPPMYKKS------------RNF 269
Query: 504 ANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVY 563
+ SS E LF VQ + I F RSR+ E + +R IL + +I Y
Sbjct: 270 TIRKSS-FGETVELFTNFVQSSFQTIVFARSRQKVERMYVESRNIL--AGRGVRKTISSY 326
Query: 564 RAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGR 623
R GY +R IE+ GG++ GV +TNALE+GID+G +D + GFPG+I S QQAGR
Sbjct: 327 RGGYQGHEREAIEKGLSGGEIDGVISTNALEMGIDIGGLDACIMDGFPGTIMSARQQAGR 386
Query: 624 SGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHP 683
+GR R S+ V VA LDQY+M+ P+ F+ E I+ N + HL+CAA+E P
Sbjct: 387 AGRGSRESIVVLVADSNALDQYYMRNPKDFFRRNCEEAVINVSNRYIQAGHLLCAAMEVP 446
Query: 684 LSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIES 743
L D ++FGS T ++ LD+ + + P +SIR I+S
Sbjct: 447 LK-AEDARHFGSEYE---TIVRVLEEEGLLGGLDAKQCL------DPNPHRNVSIRNIDS 496
Query: 744 ERYEVIDMQSNEVLE-EIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLK 802
+ Y ++D + + LE ++ +A+ + +EGAVY+++G Y V +L+ K L ++AD
Sbjct: 497 DSYNMVDKATKKPLERDMTRLQAYREAFEGAVYINKGVPYCVTKLDHEKKQILVEQADDG 556
Query: 803 YFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFD 862
Y+T++ +DI + + + +S + K + T T G+ ++ + +
Sbjct: 557 YYTRSMVSSDIMIK--DTVHNKILSTCKDVKVGFGDVDVTQQVT--GYKKIRQRTDDDLG 612
Query: 863 TVELYLPKYSYESQAVWIQVP-QSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSD 921
L +PK++ ++A+W+++P Q +AV F G+HA HA++ + P+++ + +D
Sbjct: 613 QYSLQMPKFTLSTEALWLEMPVQFAQAVETHGCDFAGGIHAIEHAIIGMYPLHLLADRND 672
Query: 922 LAPECPNPHDSRYFPERILLYDRHPGGTGVSK 953
+ H I +YD H GG G ++
Sbjct: 673 VGGVSATEHPDLEGKSGIFVYDGHQGGVGYAE 704
>gi|374610182|ref|ZP_09682975.1| Protein of unknown function DUF1998 [Mycobacterium tusciae JS617]
gi|373551213|gb|EHP77842.1| Protein of unknown function DUF1998 [Mycobacterium tusciae JS617]
Length = 776
Score = 388 bits (996), Expect = e-104, Method: Compositional matrix adjust.
Identities = 250/754 (33%), Positives = 379/754 (50%), Gaps = 72/754 (9%)
Query: 215 GSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVV 274
G + HV D+ R+ L P + A GI+ +SHQ + + AG++VV
Sbjct: 19 GGHDPLRHVADLPPRRPRLHAWPQWADPDVVQAFVDRGITAPWSHQVAAADLAHAGRHVV 78
Query: 275 VATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIG 334
++T T+SGKS+ Y LP+L AL D S LY+ PTKAL DQLRA +++T+A A D+
Sbjct: 79 LSTGTASGKSVAYQLPILTALKADSRSRVLYLSPTKALGHDQLRAAVSLTEALPALRDVA 138
Query: 335 V--YDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEV 392
YDGD+ + R + R+ +R + +NPDM+H+S+L H +++ L NL+
Sbjct: 139 PSSYDGDSPTEVRRFARERSRWIFSNPDMIHLSLLRNHARWAVFLRNLK----------- 187
Query: 393 YLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSH--VYGSDPSFVFSTATSANPR 450
+VVIDE H Y+G FG + A++LRRL RL GS P+ +F++AT+A+P
Sbjct: 188 --------YVVIDECHYYRGVFGSNVAMVLRRLLRLSMRYSATGSGPTVIFASATTASPA 239
Query: 451 EHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDD--TRNAANKTS 508
EL T++ + DGSP + LW P +DD N A
Sbjct: 240 ITASELIG-QTVDEVTEDGSPQGARTVALWEPAL------------LDDLVGENGAPVRR 286
Query: 509 SPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYV 568
S ++ + + ++ G R + F RSR+ EL R LEE P L + + YRAGY+
Sbjct: 287 SAGADAAQVMGNLIAEGARTLTFVRSRRGAELTALGARARLEEIKPDLAEKVASYRAGYL 346
Query: 569 AEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRE 628
AEDRR +ER G+L G+A TNALELG+D+ +D + GFPG++ S WQQAGR+GRR
Sbjct: 347 AEDRRALERALADGQLRGLATTNALELGVDIAGLDAVVLAGFPGTVTSFWQQAGRAGRRG 406
Query: 629 RPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLS--- 685
+ +L V +A + PLD Y + +P L PIE ID N VL L+CAA E PL+
Sbjct: 407 QSALIVLIARDDPLDTYLVHHPAALLDKPIERVVIDPSNPYVLGPQLLCAATELPLTEAE 466
Query: 686 --LIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIES 743
+ E S + G+ + GY ++ P +D P + IR
Sbjct: 467 VRMWNAEAVAASLVDDGLLRRRPTGYFAT-PGVD--------------PHPAVDIRGSSG 511
Query: 744 ERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKY 803
+ +++ + +L +A V+ GAVY+HQG +Y+V L+ +A + Y
Sbjct: 512 GQIAILEAGTGRMLGSAGAGQAPASVHPGAVYLHQGESYVVDSLDFEDGVAFVHAEEPGY 571
Query: 804 FTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDT 863
T R+ TDI V+G + + T + +VT T G+ R R +G + D
Sbjct: 572 TTFARELTDIAVTG-------EGERKTYGSVTVGLVPVSVTNTVIGYLRR-RLTGEVVDF 623
Query: 864 VELYLPKYSYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDL 922
VEL +P + E+ AV + P+ ++ + LHAA HA + ++P+ C+ D+
Sbjct: 624 VELDMPTRTLETTAVMCTITPEMLQHNGIEPLRVPGSLHAAEHAAIGLLPLVASCDRGDI 683
Query: 923 A--PECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
P D P I +YD +PGG G + +
Sbjct: 684 GGVSTAIGPVDG--LPT-IFVYDGYPGGAGFADR 714
>gi|375139320|ref|YP_004999969.1| helicase/secretion DEAH-box helicase [Mycobacterium rhodesiae NBB3]
gi|359819941|gb|AEV72754.1| helicase/secretion neighborhood putative DEAH-box helicase
[Mycobacterium rhodesiae NBB3]
Length = 779
Score = 387 bits (993), Expect = e-104, Method: Compositional matrix adjust.
Identities = 250/755 (33%), Positives = 380/755 (50%), Gaps = 71/755 (9%)
Query: 215 GSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVV 274
G + HV D++AR+ P + A GI+ L+SHQ + + +G++VV
Sbjct: 19 GGHDPLRHVADLAARQGRQHAWPAWAEPDVVQAFVDRGITTLWSHQLAAADLAHSGRHVV 78
Query: 275 VATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIG 334
++T T+SGKSL Y LP+L AL D + LY+ PTKAL DQLRA +A+T++ A D+
Sbjct: 79 LSTGTASGKSLAYQLPILTALRADARARVLYLSPTKALGHDQLRAAVALTESVPALRDVA 138
Query: 335 V--YDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEV 392
YDGD++ R + R+ +R + +NPDM+H+S+L H +++ L NLR
Sbjct: 139 PSSYDGDSSTDVRRFARERSRWIFSNPDMIHLSLLRNHARWAVFLRNLR----------- 187
Query: 393 YLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSH--VYGSD---PSFVFSTATSA 447
++V+DE H Y+G FG + A++LRRL RL + GSD P+ +F++AT+A
Sbjct: 188 --------YIVVDECHYYRGVFGSNVAMVLRRLLRLSNRYSAGGSDHSGPTVIFASATTA 239
Query: 448 NPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDD--TRNAAN 505
+P EL + E+ + DGSP + LW P +DD N A
Sbjct: 240 SPAITASELIGQTVAEVTE-DGSPQGARTIALWEPAL------------LDDLVGENGAP 286
Query: 506 KTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRA 565
S ++ + + ++ G R + F RSR+ EL R LEE AP L + YRA
Sbjct: 287 VRRSAGADAARVMGNLIAEGARTLTFVRSRRGAELTALGARARLEELAPDLAGRVASYRA 346
Query: 566 GYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSG 625
GY+AEDRR +ER G+L G+A TNALELG+D+ +D + GFPG++ S WQQAGR+G
Sbjct: 347 GYLAEDRRALERALAEGELRGLATTNALELGVDIAGLDAVVLAGFPGTVTSFWQQAGRAG 406
Query: 626 RRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLS 685
RR + +L V +A + PLD Y + +P L PIE ID N VL L+CAA E PLS
Sbjct: 407 RRGQSALIVLIARDDPLDTYLVHHPAALLDKPIERVVIDPSNPYVLGPQLLCAATELPLS 466
Query: 686 -----LIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRA 740
+ E S + G+ + GY ++ P +D P + IR
Sbjct: 467 EAEVRMWNAEAVAASLVDDGLLRRRPTGYFAT-PGVD--------------PHPAVDIRG 511
Query: 741 IESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKAD 800
+ +++ + +L +A V+ GAVY+HQG +Y+V L+ +A D
Sbjct: 512 SSGGQIAILEAGTGRLLGSTGAGQAPASVHPGAVYLHQGESYIVDSLDFEDGVAFVHAED 571
Query: 801 LKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGII 860
Y T R+ TDI V+G + + T + +VT T G+ R +G +
Sbjct: 572 PGYTTFARELTDIVVTG-------EGERKTYGPVTVGLVPVSVTNTVIGYLRR-ELTGEV 623
Query: 861 FDTVELYLPKYSYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNF 919
D VEL +P + E+ AV + P+ ++ + LHAA HA + ++P+ C+
Sbjct: 624 IDFVELEMPTRTLETIAVMCTIEPEVLEHNGIEPLRVPGSLHAAEHAAIGLLPLVASCDR 683
Query: 920 SDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
D+ P I +YD +PGG G + +
Sbjct: 684 GDIGGVSTAIGPVEGLPT-IFVYDGYPGGAGFADR 717
>gi|404420091|ref|ZP_11001838.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium fortuitum subsp. fortuitum DSM 46621]
gi|403660431|gb|EJZ14999.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium fortuitum subsp. fortuitum DSM 46621]
Length = 784
Score = 387 bits (993), Expect = e-104, Method: Compositional matrix adjust.
Identities = 258/742 (34%), Positives = 378/742 (50%), Gaps = 62/742 (8%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
HV DI R + P AL+ GI +SHQ + + AG++VVV+T T+S
Sbjct: 29 HVADIPPRHGKPDQWPQWAHPEVVQALRDRGIVAPWSHQLAAAELARAGRHVVVSTGTAS 88
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGV--YDGD 339
GKSL Y LP+L L+ D + LY+ PTKAL DQLR + + DA D YDGD
Sbjct: 89 GKSLAYQLPILSTLAEDRQARVLYLSPTKALGHDQLRTAQQLAETVDALRDAAPAPYDGD 148
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
+ R + R+ +R + +NPDM+H+S+L H +++ VYL L
Sbjct: 149 CATEVRRFARERSRWIFSNPDMIHLSLLRNHARWA-----------------VYLRHL-- 189
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVY--GSDPSFVFSTATSANPREHCMELA 457
+F+V+DE H Y+G FG + A++LRRL RLC+ GS P+ +F++AT+A P E EL
Sbjct: 190 KFIVVDECHYYRGIFGSNVAMVLRRLLRLCARYSPDGSGPTVIFASATTAAPAETAAELI 249
Query: 458 NLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDD--TRNAANKTSSPISEVS 515
+ E+ + DGSP + LW P +DD N A S +E +
Sbjct: 250 GQTVAEVTE-DGSPQGARTIALWEPAL------------LDDLTGENGAPVRRSAGAEAA 296
Query: 516 YLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRI 575
+ A+++ G R + F RSR+ EL TR LE+TAP L D + YRAGY++EDRR +
Sbjct: 297 RVMADLMTEGARTLTFVRSRRGAELTALGTRARLEDTAPELADLVASYRAGYLSEDRREL 356
Query: 576 ERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVY 635
E G+L G+A TNALELGID+ +D + GFPG++ S WQQAGRSGRR + +L V
Sbjct: 357 EAALTDGRLRGLATTNALELGIDIAGLDAVVMAGFPGTVTSFWQQAGRSGRRGQGALIVL 416
Query: 636 VAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGS 695
+A + PLD Y + +P L PIE ID N VL L+CAA E PL+ +
Sbjct: 417 IARDDPLDTYLVHHPAALLDKPIERVVIDPTNPHVLGPQLLCAAAELPLTAAEVRLWDAE 476
Query: 696 GLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNE 755
++ TL + G L P F G + P+ + IR + ++++ +
Sbjct: 477 AVAE---TLVDDGLLRKRP-----GGYFPAPGVDPHPA--VDIRGSSGGQIAILEVDTGR 526
Query: 756 VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHV 815
+L +A ++ GAVY+HQG TYLV L+ +A AD Y T R+ TDI V
Sbjct: 527 MLGSTGAGQAAAALHPGAVYLHQGETYLVDSLSFEDGVAFVYAADPGYTTFARETTDIAV 586
Query: 816 SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYES 875
+G + T + +VT T G+ R R G + D VEL +P + ++
Sbjct: 587 TGPGE-------RKTFGPVTVGLVPVSVTNTVVGYLRR-RIDGEVIDFVELDMPPSTLDT 638
Query: 876 QAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLA--PECPNPHDS 932
AV + P++++ + S LHAA HA + ++P+ C+ D+ P D
Sbjct: 639 MAVMCTITPEALQDNGIDSLSVPGSLHAAEHAAIGLLPLVASCDRGDIGGVSTAAGPVDG 698
Query: 933 RYFPERILLYDRHPGGTGVSKQ 954
P I +YD +PGG G + +
Sbjct: 699 --LPS-IFVYDGYPGGAGFADR 717
>gi|325964621|ref|YP_004242527.1| helicase family protein with metal-binding cysteine cluster
[Arthrobacter phenanthrenivorans Sphe3]
gi|323470708|gb|ADX74393.1| helicase family protein with metal-binding cysteine cluster
[Arthrobacter phenanthrenivorans Sphe3]
Length = 791
Score = 387 bits (993), Expect = e-104, Method: Compositional matrix adjust.
Identities = 247/758 (32%), Positives = 378/758 (49%), Gaps = 70/758 (9%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATM 278
Q+ HV I AR+A P + + +A S GI + Y HQ E+ + AG +VVVAT
Sbjct: 19 QLRHVRTIPAREAEHEPWPAWVHPDLVAAYGSLGIQQPYRHQVEAANIAQAGGHVVVATG 78
Query: 279 TSSGKSLCYNLPVLEALS-------------HDLSSSALYMFPTKALAQDQLRALLAMTK 325
T+SGKSL Y LP L+A+ HD + LY+ PTKALA DQL A+ A+
Sbjct: 79 TASGKSLAYQLPALDAIHRSELRVVADPGKIHDDGAVTLYLSPTKALAADQLNAIRALKL 138
Query: 326 AFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAF 385
++ YDGDT R W+RD+A ++ NPDMLH ILP H ++
Sbjct: 139 P---TVRAETYDGDTDPASRRWIRDHANFILANPDMLHFGILPNHAWWASF--------- 186
Query: 386 SLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGS-----DPSFV 440
F +R+V++DEAH+Y+G FG H A ++RRL R+C++ YG+ +P F+
Sbjct: 187 ----------FRRLRYVIVDEAHSYRGVFGSHVANLMRRLRRICAY-YGAGTSYPEPVFI 235
Query: 441 FSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDT 500
++AT++ P L + + + DGSP LW P L V +
Sbjct: 236 AASATASEPDVSFARLIG-APVTAVSRDGSPHGATTVALWEP--ALTEVRGE-------- 284
Query: 501 RNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSI 560
N A + + ++E + L A +V R IAF +SR+ E + S T+ +L+E P L +
Sbjct: 285 -NGAKERRTAVAETADLLANLVSARTRTIAFIKSRRGAETISSITKRLLDEVDPSLPQRV 343
Query: 561 CVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQ 620
YR+GY+ E+RR +ER G+L GV++T+ALELGID+ +D L G+PG+ ASL+QQ
Sbjct: 344 AAYRSGYLPEERRAVERALRSGELLGVSSTSALELGIDISGLDAVLVAGWPGTRASLFQQ 403
Query: 621 AGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAAL 680
GR+GR + ++A +VA + PLD + + +PE +F +E D N VL HL AA
Sbjct: 404 IGRAGRAGQDAIAAFVASDDPLDTFLVNHPEAIFDVSVEATVFDPSNPYVLGPHLCAAAA 463
Query: 681 EHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRA 740
E PL + FG+ + + L +GYL P+ + H + + +++RA
Sbjct: 464 ELPLGPA-ELDLFGATAETLLDRLVAQGYLRRRPA-------GWFWTHSQSAAGMVNLRA 515
Query: 741 IESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKAD 800
++D Q+ +L ++ + +Q + GAVY+HQG +Y+V++LN + ++A+
Sbjct: 516 DGGGPVSIVDAQTGSLLGTMDSPQTHYQAHTGAVYIHQGDSYVVEDLNEEDHCVMVRRAN 575
Query: 801 LKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGII 860
Y+T RD T I V + + + VTT F R S I
Sbjct: 576 PDYYTTARDVTQIEV-------LETLRTMEWGDVSVHFGDVKVTTQVVSFQRKALISNEI 628
Query: 861 FDTVELYLPKYSYESQAVWIQVP-QSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNF 919
L L ++AVW V +S+ A F LHAA HA + ++P+ +
Sbjct: 629 LGEEPLDLGARELFTKAVWFVVDNRSLTAAGLLEAQFPGALHAAEHAAIGLLPLVASSDR 688
Query: 920 SDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTD 957
D+ H P I +YD HPGG G +++ D
Sbjct: 689 WDIGGVSTALHADTGVPT-IFVYDGHPGGAGFAERGFD 725
>gi|359150394|ref|ZP_09183232.1| ATP-dependent RNA helicase [Streptomyces sp. S4]
Length = 731
Score = 386 bits (992), Expect = e-104, Method: Compositional matrix adjust.
Identities = 246/722 (34%), Positives = 368/722 (50%), Gaps = 67/722 (9%)
Query: 246 SALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL------SHDL 299
+A++ GI ++HQA +L G++V+VAT T+SGKSL Y +PVL +L +
Sbjct: 3 AAVQKAGIPDPWAHQAAVAEHALDGQSVIVATGTASGKSLAYLVPVLSSLLDGAEAPNGR 62
Query: 300 SSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNP 359
++ALY+ PTKALA DQLRA+ ++ ++ VYDGDT ++R W+R A L++TNP
Sbjct: 63 GATALYLSPTKALAADQLRAVKELSAPLGNAVRPAVYDGDTPVEEREWIRQYANLVLTNP 122
Query: 360 DMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTA 419
DMLH ILP H ++S L LR +VVIDE+H Y+G FG H A
Sbjct: 123 DMLHRGILPSHPRWSSFLRALR-------------------YVVIDESHTYRGVFGSHVA 163
Query: 420 LILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVL 479
++RRL RLC+ YG+DP F+ ++AT+A P L L + + +D SP + +F L
Sbjct: 164 QVIRRLRRLCAR-YGADPVFLLASATAAEPAVAAGRLTGLP-VSSVDDDASPRGELVFAL 221
Query: 480 WNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCE 539
W P L + + N A + +E + L ++ +R +AF SR+ E
Sbjct: 222 WEPP------LTEHHGE-----NGAPVRRTATAETAGLLTDLAVQSVRTVAFVGSRRGAE 270
Query: 540 LVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDV 599
L+ T+E L E L + YR GY+ E+RR +ER G L G+AAT ALELG+DV
Sbjct: 271 LISVITQERLAEVDRSLARRVAAYRGGYLPEERRALERALHSGDLLGLAATTALELGVDV 330
Query: 600 GHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIE 659
+D L G+PG+ ASLWQQAGR+GR + +LAV VA + PLD Y + +PE +F P+E
Sbjct: 331 SGLDAVLICGYPGTRASLWQQAGRAGRSGQGALAVMVARDDPLDTYLVHHPEAIFDQPVE 390
Query: 660 CCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSS 719
+D N VL HL AA E PL+ D FG + L+ +
Sbjct: 391 STVLDPDNPYVLAPHLCAAAAELPLTE-EDLALFGPATRELLPQLE-------------A 436
Query: 720 AKIFEYIGH------EKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGA 773
AK+ H + + IR +++++ + +L ++ + A V+ GA
Sbjct: 437 AKLLRRRAHGWHWTRRESAADLADIRGGGGRPVQIVEVGTGRLLGTVDANAAHGSVHTGA 496
Query: 774 VYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTK 833
V++HQG TYLV++L+L +AL ++A Y T RD T I V +L
Sbjct: 497 VHLHQGRTYLVRDLDLEDSVALVEQATPSYSTTARDTTAISVL--ETDAEIPWGDGRLCY 554
Query: 834 TTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQN 893
+ + VT F R +G + +L LP + ++AVW V + N
Sbjct: 555 GSVE-----VTNQVVSFLRRRLITGEVLGETKLDLPPRTLRTRAVWWTVTEDQLDAARIN 609
Query: 894 FSFRSG-LHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVS 952
G LHAA HA + ++P++ C+ D+ H P + +YD HPGG G +
Sbjct: 610 PEQLGGALHAAEHASIGMLPLFATCDRRDIGGVSIPLHPDTLLPT-VFVYDGHPGGAGFA 668
Query: 953 KQ 954
++
Sbjct: 669 ER 670
>gi|418476047|ref|ZP_13045398.1| helicase [Streptomyces coelicoflavus ZG0656]
gi|371543331|gb|EHN72140.1| helicase [Streptomyces coelicoflavus ZG0656]
Length = 771
Score = 386 bits (992), Expect = e-104, Method: Compositional matrix adjust.
Identities = 255/765 (33%), Positives = 379/765 (49%), Gaps = 73/765 (9%)
Query: 206 MVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIM 265
+++ L G ++ H E + R PD + A+++ GI ++HQA
Sbjct: 2 LLDRLAAGPSRAARITHTEHLPPRAGRHAVWPDRIRPEVLGAVRAAGIEHPWAHQARVAE 61
Query: 266 ASLAGKNVVVATMTSSGKSLCYNLPVLEAL------SHDLSSSALYMFPTKALAQDQLRA 319
+L G +VVVAT T+SGKSL Y +PVL AL + ++ LY+ PTKALA DQ R+
Sbjct: 62 HALDGDSVVVATGTASGKSLAYLVPVLSALVDGSEAPNGRGATTLYLAPTKALAADQCRS 121
Query: 320 LLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSN 379
+ ++ S+ VYDGDT ++R W+R ++TNPDMLH ILP H ++S L
Sbjct: 122 VKELSHPLGTSVRAAVYDGDTPFEEREWIRQYGTYVLTNPDMLHRGILPSHPRWSSFLKA 181
Query: 380 LRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSF 439
L+ +VVIDE H Y+G FG H A +LRRL RLC+ YG+ P F
Sbjct: 182 LK-------------------YVVIDECHTYRGVFGSHVAQVLRRLRRLCAR-YGASPVF 221
Query: 440 VFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDD 499
+ ++AT+A P L L +E + +D SP + +F LW P T+++
Sbjct: 222 LLASATAAEPAVAARRLTGLPVVE-VADDASPRGELVFALWEP----------PLTELEG 270
Query: 500 TRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDS 559
+ A + ++ +E + L ++ G+R I F RSR+ EL+ +E L E L
Sbjct: 271 EKGAPVRRTA-TAEAADLLTDLTVQGMRSITFVRSRRGAELISVIAQERLAEVDRSLAGR 329
Query: 560 ICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQ 619
+ YR GY+ E+RR +ER G L G+AATNALELG+D+ +D + G+PG+ ASLWQ
Sbjct: 330 VAAYRGGYLPEERRALERALHSGDLLGLAATNALELGLDISGLDAVVIAGYPGTRASLWQ 389
Query: 620 QAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAA 679
QAGR+GR + +LAV VA + PLD + + +PE LF P+E +D N VL HL AA
Sbjct: 390 QAGRAGRAGQGALAVLVARDDPLDTFLVHHPEALFDQPVESTVLDPDNPYVLAPHLCAAA 449
Query: 680 LEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIR 739
E PL+ D K FG + L+ L + + + E+ T IR
Sbjct: 450 AELPLTE-EDLKLFGPACEELLPQLEAAKLLR------RRTRAWHWTRRERAADLT-DIR 501
Query: 740 AIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKA 799
+V++ + +L ++ A V+EGAV++HQG TYLV+ L+L +AL ++A
Sbjct: 502 GEGGRPVQVVEEGTGRLLGTVDAGAAHTTVHEGAVHLHQGRTYLVRSLDLEDSVALVEQA 561
Query: 800 DLKYFTKTRDYTDIHV---------SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGF 850
Y T RD T I V GG Y + VT F
Sbjct: 562 TPAYSTVARDTTAISVLETDVEVPWGGGRLCYGS----------------VEVTNQVVSF 605
Query: 851 YRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSG-LHAASHALLH 909
R +G + +L LP + ++AVW V + N G LHAA HA +
Sbjct: 606 LRRRLITGEVLGETKLDLPPRTLRTRAVWWTVTEDQLDEARINPEILGGALHAAEHASIG 665
Query: 910 VVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
++P++ C+ D+ H P + +YD HPGG G +++
Sbjct: 666 MLPLFATCDRWDIGGVSVPLHPDTLLPT-VFVYDGHPGGAGFAER 709
>gi|403167589|ref|XP_003327374.2| hypothetical protein PGTG_09923 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375167098|gb|EFP82955.2| hypothetical protein PGTG_09923 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 1270
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 242/726 (33%), Positives = 363/726 (50%), Gaps = 111/726 (15%)
Query: 247 ALKST-GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALY 305
AL+ST GI++LYSHQA +I G NV+V T TSSGKSL Y +P+L+AL SS LY
Sbjct: 329 ALESTKGITRLYSHQARAIDLLSEGSNVIVTTSTSSGKSLIYQIPMLQALEKSHSSCGLY 388
Query: 306 MFPTKALAQDQLRAL----LAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDM 361
+FPTKALAQDQ R+L L+ + + + YDGDT +R +R +A ++ TNPDM
Sbjct: 389 IFPTKALAQDQKRSLDELILSYGEPLSRRVRVETYDGDTPSDERAGIRKDANVIFTNPDM 448
Query: 362 LHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALI 421
LH +ILP ++ R NLR +VV+DE H Y G FG H A+I
Sbjct: 449 LHSAILPNEERWRRFFQNLR-------------------YVVVDELHIYSGLFGAHVAMI 489
Query: 422 LRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWN 481
+RRL R+C V ++ F+ +AT+ NP EH L + L+ DG+P K V+WN
Sbjct: 490 MRRLRRMCEAVGNAEVRFISCSATTINPEEHMKSLFGFDQVALVSEDGAPSGAKRHVIWN 549
Query: 482 PTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELV 541
P + D R+ S I E S +F +++ G+R I FCR R+ CEL+
Sbjct: 550 PP-------------LVDQRDPGQGRVSAIVETSRVFRFLLERGVRTIVFCRVRRTCELL 596
Query: 542 LSYTREILEETAP-HLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVG 600
+ +E L E+ L + + YRAGY ++RR IE + F G L G+ AT ALELGID+G
Sbjct: 597 MKQVQEDLVESGRRELKERVRAYRAGYTTQERRLIESEMFSGALLGIIATTALELGIDIG 656
Query: 601 HIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIEC 660
+D L LGFP S++ L QQAGR+GRR + SLA+ V + LDQ+F ++PE+LF++
Sbjct: 657 GLDAVLSLGFPHSLSGLIQQAGRAGRRSKDSLAMLVLEQRGLDQHFARHPEELFQAHGSS 716
Query: 661 CHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSA 720
+D N ++L HL CAA E P+ D K+FG L D L
Sbjct: 717 VSLDLHNPRLLLAHLHCAAHEIPVVPAEDSKFFGPSLQE-----------LCDAHLAMDG 765
Query: 721 KIFEYIGHEKMPSHTISIRAI-----------ESERYEVIDMQS---NEVLEEIEESKAF 766
+ F + G PS ISIR + S+ Y ++D+ + ++LE+IE +
Sbjct: 766 EGFFHTGQSN-PSQLISIRGLITTNNGGLDGSSSDSYTIVDISTPHHPKILEDIERERVL 824
Query: 767 FQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKI 826
F+ +EGAV++HQG + +V L+ + + A + + T+ A++I
Sbjct: 825 FECFEGAVFLHQGASLVVSNLDHRRQTVSVRSAAIHFLTRP-------------IVASRI 871
Query: 827 SKDQLTKTTAQALACT---------VTTTWFGFYRL-WRGSGIIFDTVEL---------- 866
+ + T +TTT G+ ++ + + D +EL
Sbjct: 872 LPQKTLRNLPILPDSTHFIFLGKLLITTTITGYLKVDAKNRSKVLDRIELPNEANGKDDG 931
Query: 867 -YLPKYSYESQAVWIQVPQSV-------------KAVVEQNFSFRSGLHAASHALLHVVP 912
+ S + VWI +P + ++ + FSF ++ H L H++
Sbjct: 932 MVSNELSTSTVGVWIDLPAPIIQSLASLFATPQPSSISDPAFSFYPKINLVIHLLEHLIL 991
Query: 913 IYVRCN 918
++ N
Sbjct: 992 FFLNSN 997
>gi|389741278|gb|EIM82467.1| DEAD/H helicase [Stereum hirsutum FP-91666 SS1]
Length = 1082
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 247/740 (33%), Positives = 395/740 (53%), Gaps = 84/740 (11%)
Query: 236 IPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL 295
I ALLD+ K I+ LY+HQ SI A K+V+V+T T+SGKS+ Y +P+L L
Sbjct: 314 IQQALLDSRK-------ITSLYTHQVASINALQQNKHVIVSTSTASGKSVIYQVPLLRFL 366
Query: 296 SHDLSSSALYMFPTKALAQDQLRALLAMTKAFDA--SIDIGVYDGDTTQKDRMWLRDNAR 353
D S++A++++PTKALAQDQ AL A+ A I + YDGDT Q+ R +R+ A
Sbjct: 367 EEDNSATAIFIYPTKALAQDQRAALEALLAACPGLEHIKVSTYDGDTPQEQRSVVRETAS 426
Query: 354 LLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGA 413
++ TN DMLH SILP+ + L NL+L+A +DE H Y
Sbjct: 427 VIFTNFDMLHASILPHEDLWRSFLKNLKLVA-------------------VDELHYYHDL 467
Query: 414 FGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCA 473
FG H A + RRL R+C+ V FV +AT + P+EH + L +E I DG+P
Sbjct: 468 FGSHVAFVTRRLRRVCAAVGNRRLHFVSCSATISKPKEHMKRIFGLEDVEAITEDGAPSG 527
Query: 474 QKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCR 533
+K F++W+ +D+ + S+ +++ + L +++ G+R I FC+
Sbjct: 528 RKDFIIWD------------SPPIDEMAPEMGRHSA-VTQATGLMRYLMKRGVRVIMFCK 574
Query: 534 SRKLCELVLS--YTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATN 591
L + S ++IL ++ + R GY EDRR+IE F G+L G+ ATN
Sbjct: 575 VNFLTTSLNSARVLKDIL------VLTDQKIMRVGYAQEDRRKIEAQAFSGQLLGIVATN 628
Query: 592 ALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPE 651
ALELG+D+G +D + +GFP +A+L QQ GR+GRR R +LAV VA P+D++++ P+
Sbjct: 629 ALELGVDIGVLDAVIMMGFPFGVANLRQQIGRAGRRARDALAVLVADSLPIDRHYVLNPQ 688
Query: 652 KLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLS 711
+F P++ ID ++ ++E HL CAA E P+S + DEK+FG L+ I K +
Sbjct: 689 DIFDKPMDELIIDLESDWIVEAHLQCAAHEMPVSAVEDEKWFGP-LTKEIC--KTKLVKD 745
Query: 712 SDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVID---MQSN---EVLEEIEESKA 765
D + +K + P+ +S+R E E+Y ++D +QS ++LEEIE S+A
Sbjct: 746 KDGWYHTHSKFLPF------PAKYVSLRGAEEEKYVLVDVTKLQSEGTAKILEEIEISRA 799
Query: 766 FFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATK 825
F++YEGA++ HQG T+L+KE++ K A + D+ + T RD+TD+ + +
Sbjct: 800 LFELYEGAIFTHQGLTFLIKEVSHDLKRAKAIRTDVSWTTSPRDFTDV-----DAVQTYR 854
Query: 826 ISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQS 885
I + + + A V T FG+++L +I D V++ P + S +W+ V +S
Sbjct: 855 IREIKESPRRAFYGRVDVMTVVFGYFKL--RLKVILDVVDVETPPWERTSTGLWMDVSKS 912
Query: 886 VKAVV-EQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNP-------HDSRYFPE 937
+ ++ ++ + +H+A HA ++ P+ S+L EC P R P
Sbjct: 913 ILDLMNDKGINPAEAIHSAQHAFMNRFPMS-----SELRTECKAPEKEYKATESQRKRPA 967
Query: 938 RILLYDRHPGGTGVSKQVTD 957
R++ YD G G++ + D
Sbjct: 968 RLIFYDIPGKGGGIAAKAFD 987
>gi|213966014|ref|ZP_03394203.1| dead/deah box helicase [Corynebacterium amycolatum SK46]
gi|213951309|gb|EEB62702.1| dead/deah box helicase [Corynebacterium amycolatum SK46]
Length = 780
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 256/751 (34%), Positives = 385/751 (51%), Gaps = 70/751 (9%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+ H+ D+ AR V P+ + K L GI L++HQA + + G + VVAT T
Sbjct: 23 VTHIADLPARAGVTAPWPEWVPGWLKEVLVDRGIENLWTHQAATANLAREGVHCVVATGT 82
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGD 339
+SGKSL Y LPVL LS +++ALY+ PTKAL DQL AM +S+ I +YDGD
Sbjct: 83 ASGKSLGYLLPVLTELSATPAATALYLSPTKALGADQLDTARAMAPVSLSSL-ISLYDGD 141
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T Q R +RD+AR + TNPDMLH+S+L H +++R+L NLR
Sbjct: 142 TPQDARRAIRDHARWVFTNPDMLHVSVLGNHVRWTRMLRNLR------------------ 183
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
++V+DE HAY+G FG + A ILRRL RL YG+ P+ +F++AT+ +P + L
Sbjct: 184 -YIVVDECHAYRGVFGANVAQILRRLLRLSRE-YGASPTVIFASATTNDPADQARRLIG- 240
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
+E + DG+P ++ LW P D+ A + +P +E + + A
Sbjct: 241 EPVEAVTEDGAPVGERTIALWEPGLL---------PDLQGENGAPVRRPAP-TEAADIMA 290
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETA-PHLVDSICVYRAGYVAEDRRRIERD 578
+++ G R + F RSR E V RE LE+ + + I YRAGY+AE+RR IER
Sbjct: 291 DLLVEGARTLTFTRSRSSAEKVALGVRERLEKRRRSDIAERIESYRAGYLAEERRDIERM 350
Query: 579 FFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAF 638
G L GVA TNALELGIDVG +D + GFPG++AS WQQAGR+GRR + +L V VA
Sbjct: 351 LDDGTLLGVATTNALELGIDVGGLDAVVQAGFPGTVASFWQQAGRAGRRGQGALVVLVAR 410
Query: 639 EGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLS 698
+ P+D Y + P L P+E D +N V+ HL CAA+E P++ + + ++
Sbjct: 411 DDPMDTYLVHNPSALLGRPVEKTVFDPRNPHVVWSHLYCAAVEKPVTTSQLQAWGTLPVA 470
Query: 699 SGITT---LKNRGYLSSDP-----SLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVID 750
+ + L+ R + +P D +I H+ +++R + + ++D
Sbjct: 471 EDMVSAGWLRKRTWEGQEPVYYPTDRDEGPRIA--TAHD-----AVNVRGGDGQEVAIVD 523
Query: 751 MQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDY 810
+L I+ +A QV++GAVY+H+G +YLV +L+ S +AL +Y T +R
Sbjct: 524 QTDGRLLGTIDLGRAMQQVHDGAVYLHRGESYLVDQLDFDSLVALVHPEQPRYSTSSRMD 583
Query: 811 TDIHVSGGNNAYATKISKDQLTKTTA-QALACTV-----TTTWFGFYRLWRGSGIIFDTV 864
T I + + D + Q +C V T++ RL +G I D+V
Sbjct: 584 TTIRI----------LDVDDMRHYQGLQVASCQVEVFHQVTSY--LRRL--DTGEILDSV 629
Query: 865 ELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSG-LHAASHALLHVVPIYVRCNFSDLA 923
EL P ++AV +P+S G LHAA HA + ++P+ C+ D+
Sbjct: 630 ELDYPPQRLVTRAVAYTMPESTLRSWGVGSDIAPGALHAAEHAAIGMLPLIATCDRWDIG 689
Query: 924 PECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
H P + +YD HPGG G + +
Sbjct: 690 GVSTVMHADTQQPT-VFVYDGHPGGAGFADR 719
>gi|357390505|ref|YP_004905346.1| putative ATP-dependent helicase [Kitasatospora setae KM-6054]
gi|311896982|dbj|BAJ29390.1| putative ATP-dependent helicase [Kitasatospora setae KM-6054]
Length = 793
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 254/763 (33%), Positives = 388/763 (50%), Gaps = 62/763 (8%)
Query: 200 QLLPLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSH 259
Q P ++ L G G ++ H E + AR+A P+ + +A G+ ++H
Sbjct: 5 QHQPEALLATLSTGRGRSDRLTHTEHLPAREARYAPWPEGIRQEVVAAASGLGVVLPWAH 64
Query: 260 QAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL------SHDLSSSALYMFPTKALA 313
QAE++ + AG+ V+AT T+SGKSL Y P+L L + ++ALY+ PTKALA
Sbjct: 65 QAEAMDLAAAGRTTVIATGTASGKSLGYLAPLLSDLLTGTEARNGRGATALYLAPTKALA 124
Query: 314 QDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQF 373
DQ R + + + +YDGDT ++R W+R A ++TNPDMLH +LP H ++
Sbjct: 125 ADQRRRAAELVPD---RVRVALYDGDTPPQEREWVRQYASYVLTNPDMLHRGVLPAHPRW 181
Query: 374 SRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVY 433
+ L LR +VV+DE H Y+G FG H A +LRRL RLC+ Y
Sbjct: 182 ASFLKTLR-------------------YVVVDECHTYRGVFGSHVAQVLRRLRRLCAR-Y 221
Query: 434 GSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKS 493
GS P+F+ ++AT+A P L L + D SP +F LW P L ++
Sbjct: 222 GSSPTFLLASATTAEPAVTAERLTGLPATA-VTEDCSPRGPMVFALWEPP------LTEN 274
Query: 494 QTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETA 553
+ + A S +E +L ++V G R +AF RSR+ ELV +E L +
Sbjct: 275 TGE-----HGAPVRRSATAEAGHLLTDLVHGGTRTVAFVRSRRAAELVALQAQEQLGQP- 328
Query: 554 PHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGS 613
L + YR GY+AE+RR +ER G+L G+A+T+ALELG+DV +D L G+PG+
Sbjct: 329 --LAARVAAYRGGYLAEERRALERALHSGRLLGLASTSALELGVDVSGLDAVLLAGYPGT 386
Query: 614 IASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQ 673
ASLWQQAGR+GR + +LAV +A + PLD Y + +PE LF +P+E +D N VL
Sbjct: 387 RASLWQQAGRAGREGQGALAVLIARDDPLDTYLVHHPEALFATPVEATVLDPDNPHVLAP 446
Query: 674 HLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPS 733
HL AA E PL+ D + FG + + L+ RG L P D S Y + +
Sbjct: 447 HLCAAAAELPLT-DSDLELFGPSAAPLLPVLERRGLLRRRP--DGS----WYWTRRERAA 499
Query: 734 HTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKI 793
+ +R ++++ + +L ++ A V+ GAV++HQG TYLV+EL+L S +
Sbjct: 500 DGVDLRGSGGSPVQIVEADTGRLLGTVDAEAAHTAVHTGAVHLHQGRTYLVRELDLDSSV 559
Query: 794 ALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRL 853
AL A+ Y T RD T I A + + ++ + + VT G+ R
Sbjct: 560 ALVTPANPPYTTSARDVTSI-------AILSTDTTEEWGEARLSFGSVEVTNQVVGYLRK 612
Query: 854 WRGSGIIFDTVELYLPKYSYESQAVWIQVP--QSVKAVVEQNFSFRSGLHAASHALLHVV 911
+G I +L LP + ++AVW V Q + A++ + HAA HA + ++
Sbjct: 613 RISTGQILGESKLDLPPRTLRTRAVWWTVTEDQLLDALIPFD-QLPGAAHAAEHASIGLL 671
Query: 912 PIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
P++ C+ D+ H P + +YD H GG G +++
Sbjct: 672 PLFATCDRWDIGGVSVPLHPDTGLPT-VFVYDGHSGGAGFAER 713
>gi|84495071|ref|ZP_00994190.1| putative ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
gi|84384564|gb|EAQ00444.1| putative ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
Length = 765
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 257/753 (34%), Positives = 399/753 (52%), Gaps = 78/753 (10%)
Query: 215 GSQG-QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNV 273
G +G ++ HVE + AR A + + PD + ++L +GI++ +SHQ E++ + AG +V
Sbjct: 17 GERGARLRHVERLPARAAQVADWPDWMASPLLASLTGSGIARPWSHQREAMDLAHAGSHV 76
Query: 274 VVATMTSSGKSLCYNLPVLEALSHDLSS------SALYMFPTKALAQDQLRALLAMTKAF 327
V++T T+SGKSL Y +P L A+ LSS + LY+ PTKALA DQL + A+
Sbjct: 77 VMSTGTASGKSLGYLVPALTAVLDGLSSPTGRGATVLYIAPTKALAADQLARIEALAIP- 135
Query: 328 DASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSL 387
+ YDGDT +R W+R++A +++TNPD+LH S+LP H +S L +L+
Sbjct: 136 --GVRAATYDGDTPNDERRWIREHANVVLTNPDLLHHSMLPGHKNWSPFLRSLK------ 187
Query: 388 VTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSA 447
+VVIDE H Y+G FG H + +LRRL R+C+ Y S P+FV ++AT +
Sbjct: 188 -------------YVVIDECHIYRGVFGSHVSSVLRRLRRVCTR-YRSTPTFVLASATVS 233
Query: 448 NPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKT 507
+P H L + + + DGSP F LW P + ++++R +A
Sbjct: 234 HPASHASSLVGMP-VSPVDVDGSPREALTFALWEPPT------------IEESRRSAT-- 278
Query: 508 SSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGY 567
+E + L A++V G++ +AF RSR E + S R L + + SI YR GY
Sbjct: 279 ----TEAAELLADLVAAGVQTLAFARSRAGVESLASSARRRLGQVSGSAEASIAAYRGGY 334
Query: 568 VAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRR 627
+ ++RR +ER G+L G+AATNALELG+D+ +D L G+PG A+LWQQAGR+GR
Sbjct: 335 LPQERRELERALRDGELRGLAATNALELGVDISGLDAVLMAGWPGRRANLWQQAGRAGRS 394
Query: 628 ERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLI 687
R SLAV++A + PLD YF+++PE +F +PIE +D N VL HL AA E PL+
Sbjct: 395 GRESLAVFIAADDPLDTYFLEHPEAIFGAPIESTVMDPANPHVLAPHLAAAAHELPLTEA 454
Query: 688 YDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYE 747
D FG+G + L RG L P+ + + P +++R +E
Sbjct: 455 -DLPMFGTGARGVVDLLVERGILRRRPT-------GWFWARDDRPGDHLNLRGT-TEVVS 505
Query: 748 VIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKT 807
+++ +S VL I+E+ A QV+ GAV++HQG T++V +L+L A + D + T +
Sbjct: 506 IVERRSGRVLGTIDEASAHSQVHTGAVHVHQGDTFVVTDLDLPGATATIVRGDPGWSTHS 565
Query: 808 RDYTDIHVSGGNNAYATKISKDQLTKTTAQALAC----TVTTTWFGFYRLWRGSGIIFDT 863
+ + + G T+ + C VTT GF R SG + T
Sbjct: 566 QSQSSFSILGAKR-----------TQRWGEIDVCFGSVRVTTQVTGFLRRLP-SGEVLGT 613
Query: 864 VELYLPKYSYESQAVWIQVPQSV--KAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSD 921
L LP+ S ++ VW +P + +A +E+ HAA HA + ++P+ + D
Sbjct: 614 HPLDLPERSLVTRGVWWTMPLDLLEEAGIEEA-QVPGAAHAAEHAAIGMLPLVATSDRWD 672
Query: 922 LAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
+ + H P IL+YD +PGG G +++
Sbjct: 673 VGGVSTDMHPDTGLPT-ILIYDGYPGGAGFAER 704
>gi|452958903|gb|EME64245.1| DEAD/DEAH box helicase-like protein [Amycolatopsis decaplanina DSM
44594]
Length = 821
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 257/777 (33%), Positives = 380/777 (48%), Gaps = 94/777 (12%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+ HV ++ AR A V+ P+ AL++ G+ + HQ E+ + GK+VV++T T
Sbjct: 28 VTHVAELPARPADSVDWPEWAAGPVVEALRANGVKAPWRHQVEAASLAREGKHVVISTGT 87
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL--LAMTKAFDASIDIGVYD 337
+SGKSL Y LPVL AL D +SALY+ PTKAL DQLRA+ L + KA AS +D
Sbjct: 88 ASGKSLAYQLPVLSALVEDERASALYLSPTKALGADQLRAVSSLDIKKARAAS-----FD 142
Query: 338 GDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFL 397
GDT ++R W+R +A + TNPDMLH IL H ++SR F
Sbjct: 143 GDTPLQERDWVRAHANWVFTNPDMLHRGILSSHARWSRF-------------------FR 183
Query: 398 FIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELA 457
+ FVV+DE H+Y+G FG H AL+LRRL R+ ++ YG+ P FV ++AT+A+P +L+
Sbjct: 184 RLAFVVVDECHSYRGVFGSHVALLLRRLRRVAAY-YGASPVFVLASATTADPAAFASKLS 242
Query: 458 NLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYL 517
+ + + DGSP + LW P L S L+ N A S +E S +
Sbjct: 243 GQDCVPVTE-DGSPRGARTVALWEPP--LLSELSG--------ENGAPVRRSAGAEASRI 291
Query: 518 FAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIER 577
AE+V G R +AF RSR+ EL R IL E L +S+ YR+GY+ E+RR +E
Sbjct: 292 LAELVIEGARSLAFVRSRRGAELTALGARRILSEVDGALAESVAAYRSGYLPEERRALEA 351
Query: 578 DFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVA 637
G+L GVA TNALELG+D+ +D + G+PG++AS WQQAGR+GR +L V+VA
Sbjct: 352 ALLSGRLLGVATTNALELGVDIAGLDAVVLAGYPGTLASFWQQAGRAGRAGDAALVVFVA 411
Query: 638 FEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGL 697
+ PLD Y + +P + P+E +D N VL L CA E PL+ + G
Sbjct: 412 RDDPLDTYLVHHPAAILDRPVEAAVLDPSNPYVLGPQLACAIAELPLTEPEVAAFGGDQA 471
Query: 698 SSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVL 757
+ + L + S Y P + IR E+ V++ S +L
Sbjct: 472 RAVLADLVKEKIVRRRTS-------GWYWTSRDRPHAEVGIRGSGGEQIAVVEADSGRML 524
Query: 758 EEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSG 817
++ A + V+ GAVY+HQG +Y+V EL+L + +AL D + T R+ DI V
Sbjct: 525 GTVDPGSACYAVHPGAVYLHQGSSYVVDELDLETGLALVHAEDPDWTTSPREIVDIGVL- 583
Query: 818 GNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQA 877
T++ T +V++ G+ R R SG + D L LP+ S ++A
Sbjct: 584 --RTEETRV----YGGITVNLGEVSVSSQVVGYLRR-RPSGEVLDQTPLDLPEQSLHTRA 636
Query: 878 VWIQVPQSVKAV---VEQNFSFRSG----------------------------------- 899
VW + + + V R G
Sbjct: 637 VWYTISAELLGLSDGVAGTGGHRPGTEVLEPVGTGGSRVGTEELGGAPGTSAGLDPARVP 696
Query: 900 --LHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
LHAA HA + ++P++ C+ D+ H+ + ++D HPGG G + +
Sbjct: 697 GALHAAEHAAIGLLPLFATCDRWDIGGVSTAWHED-TGEATVFVHDGHPGGAGFADR 752
>gi|452211117|ref|YP_007491231.1| ATP-dependent helicase [Methanosarcina mazei Tuc01]
gi|452101019|gb|AGF97959.1| ATP-dependent helicase [Methanosarcina mazei Tuc01]
Length = 790
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 248/758 (32%), Positives = 388/758 (51%), Gaps = 57/758 (7%)
Query: 206 MVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIM 265
++ ++ I + Q+VH+E+ AR A P L K+AL TGI LYSHQAE+I
Sbjct: 6 LLNEIKASIRYENQIVHIEETPARDACYT--PLELEVRIKAALSGTGIEALYSHQAEAIE 63
Query: 266 ASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTK 325
K++V+ T T+SGKSL Y +PV EA+ D ++ALY+ P AL DQL+A L
Sbjct: 64 KVREEKDLVLCTSTASGKSLTYMIPVFEAVLKDPEATALYISPLNALVNDQLKAFLEFEG 123
Query: 326 AFDASIDIGVYDGDTTQKDRMWLRDN-ARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
A ++ I Y G + + +RD ++ TNP+M+HMS L +H + R SNLR
Sbjct: 124 ALNSGAGIARYTGALSADQKRKIRDGKTNIVFTNPEMVHMSFLAWHHLWRRFFSNLR--- 180
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
F+V+DE+H Y+G G + A +LRRL R+ + YG+ P F+ +A
Sbjct: 181 ----------------FIVVDESHYYRGVIGSNMANVLRRLLRVAEY-YGASPQFICCSA 223
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T NP +H L + +++N+GS + FV WNP + + R
Sbjct: 224 TIGNPEDHTETLLGREAV-VVENNGSLQGPQKFVFWNPPLYM------------NGRGCT 270
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYR 564
+ SS SE S LF VQ GL+ +AF RSR+ E + E+L + L +IC YR
Sbjct: 271 VRRSS-FSEASALFTRAVQAGLQTLAFTRSRQGVERMYRSCMELLRDRG--LPSAICPYR 327
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
+GY +R IE+ G+L GV +TNALELGID+G +DV + G+PG++ S QQAGR+
Sbjct: 328 SGYFDREREEIEKKMNSGELRGVISTNALELGIDIGGLDVCILDGYPGTVMSARQQAGRA 387
Query: 625 GRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
GR SL + VA LDQY+M+ P F E ++ +N +L HL+CAA E PL
Sbjct: 388 GRSGNESLVLMVAGTNALDQYYMRNPADFFARSSENAVLNPKNPYILAGHLLCAAKEIPL 447
Query: 685 SLIYDEKYFGSGLSSGITTLKNRGYLS-SDPSLDSSAKIFEYIGHEKMPSHTISIRAIES 743
DEKYFG G S + L+ G L+ SD + ++ + + ++T S+ A E
Sbjct: 448 RE-SDEKYFGGGYSRVVELLEAEGLLAGSDMKYSTDPFPYKQVSLRGIDNNTYSLLAFEG 506
Query: 744 ERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKY 803
ER S + +EIEE+ AF + + GAVYMH+G + + ++ + K Y
Sbjct: 507 ER-------SFPIEKEIEETLAFRECHPGAVYMHRGEPFYINGIDHEKREIHAIKTHDSY 559
Query: 804 FTKTRDYTDIHVSGGNNAYATK--ISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIF 861
+TK + + V YA K + ++ + VT G+ ++ S
Sbjct: 560 YTKPMIDSSVVV---QETYAAKPLLHAPEVEVGLGEV---EVTDRIAGYRKIRTHSDETM 613
Query: 862 DTVELYLPKYSYESQAVWIQVPQSVKAVV-EQNFSFRSGLHAASHALLHVVPIYVRCNFS 920
++ +P + ++ A+W+++P ++ ++ + F G+HA HA++ + P+++ + S
Sbjct: 614 SAHDIEMPPITLQTVALWLKLPDRLQEMIGDHKLDFAGGIHAVEHAMISMYPLHLLVDRS 673
Query: 921 DLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDM 958
D+ H I +YD H GG G +++ D+
Sbjct: 674 DVGGVSTPSHQDLGGKSGIFIYDGHRGGVGYAEKGYDL 711
>gi|205373896|ref|ZP_03226698.1| hypothetical protein Bcoam_11910 [Bacillus coahuilensis m4-4]
Length = 751
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 243/742 (32%), Positives = 388/742 (52%), Gaps = 65/742 (8%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATM 278
Q+ + I ++A V P+ L +++ + GI LY+HQ S ++ K+ T
Sbjct: 13 QITYWHTIPEKEAKTVPFPERLHPKLRASFEKRGIHSLYTHQGTSFDLAMNKKSFTAVTP 72
Query: 279 TSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDG 338
T+SGK+LCYNLPVL+++ + + ALY+FPTKALAQDQ L + SI+ YDG
Sbjct: 73 TASGKTLCYNLPVLQSILDNEMTRALYIFPTKALAQDQKSELNEIIDEAGVSINSYTYDG 132
Query: 339 DTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLF 398
DT+ R +R ++ITNPDMLH +ILP+H ++ + NL
Sbjct: 133 DTSANIRQKVRKAGHIVITNPDMLHSAILPHHTKWVSLFENL------------------ 174
Query: 399 IRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELAN 458
+++VIDE H Y+G FG H A ++RRL R+C + YGS P+F+ ++AT ANP+E E+
Sbjct: 175 -KYIVIDELHTYRGVFGSHVANVIRRLKRICQY-YGSQPTFICTSATIANPKE-LAEILT 231
Query: 459 LSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLF 518
+ L+ N+G+P +K FV +NP V+NKS N S EV L
Sbjct: 232 EEEITLVNNNGAPSGKKHFVFYNP-----PVVNKS----------LNIRRSATLEVRKLA 276
Query: 519 AEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERD 578
E++++ ++ I F +SR E++L+Y +E++++ SI YR GY+ RR IE+
Sbjct: 277 GELLKNKIQTIVFAKSRVRVEILLTYLQELVKKELG--TKSIRGYRGGYLPTQRREIEKG 334
Query: 579 FFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAF 638
G + GV +TNALELG+D+G + V + G+PG+IAS WQQAGR+GRR +L + VA
Sbjct: 335 LRNGDIYGVVSTNALELGVDIGQLQVCVMTGYPGTIASAWQQAGRAGRRHGEALIIMVAS 394
Query: 639 EGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLS 698
PLDQY +++PE F+ E ++ N +L H+ CAA E P S FG
Sbjct: 395 STPLDQYIIEHPEYFFQQSPEEARLNPDNLIILIDHIKCAAYELPFS---KGDQFGH--- 448
Query: 699 SGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVI---DMQSNE 755
+ + +L+ + L + + ++ ++ P+H IS+R+ E +I D+ + +
Sbjct: 449 --VEIVDILDFLAEEGVLHQNKDRYFWM-NDAFPAHNISLRSCSQENVVIIDQSDVSNVK 505
Query: 756 VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHV 815
V+ E++ A +++ A+Y+HQG Y V+ L+ K A + D+ Y+T + V
Sbjct: 506 VIGEMDRFSAMTLLHDEAIYLHQGDQYQVELLDWYEKKAFVRGVDVDYYTDANLAVQLSV 565
Query: 816 SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYES 875
+ K + +A+A F + GSG I +LP+ +
Sbjct: 566 LEMDKESQNDRLKIGYGDVSVRAMATIFKKIKFDSHENI-GSGPI------HLPEEEIHT 618
Query: 876 QAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSD--LAPECPNPHDSR 933
+ WI + K+ + +N GL +HAL +VP+ V C+ D + P+ H+
Sbjct: 619 SSAWISLLG--KSNLSEN-RLEEGLIGIAHALHIIVPLNVMCDPKDVHIVPQVKAAHNE- 674
Query: 934 YFPERILLYDRHPGGTGVSKQV 955
P I +YD +PGG G+S +V
Sbjct: 675 -LP-TIFIYDHYPGGIGLSSKV 694
>gi|378716302|ref|YP_005281191.1| putative DEAD/DEAH box helicase [Gordonia polyisoprenivorans VH2]
gi|375751005|gb|AFA71825.1| putative DEAD/DEAH box helicase [Gordonia polyisoprenivorans VH2]
Length = 786
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 257/752 (34%), Positives = 397/752 (52%), Gaps = 62/752 (8%)
Query: 218 GQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVAT 277
G + H+ I +R A + P+ + +N + A ++ GI+K + HQA + + +G++V ++T
Sbjct: 23 GPITHLSVIPSRTATFTDWPEWVDENVREAFEADGITKPWIHQAAAAEHAHSGRHVSIST 82
Query: 278 MTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFD--ASIDIGV 335
T+SGKSL Y LP+L AL + S+ALY+ PTKAL DQ+RA+ A+T A +
Sbjct: 83 GTASGKSLAYQLPILNALLTEPHSTALYLAPTKALGADQIRAVSALTAGRGPFAHLAPCA 142
Query: 336 YDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLI 395
YDGDT R W R ++R + TNPDMLH+ IL + +LS + V +
Sbjct: 143 YDGDTDPNIRHWARTHSRWIFTNPDMLHIGIL------TGVLSGGGGSSAGPVRGQWRQF 196
Query: 396 FLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCME 455
F +R++VIDE H Y+G FG HTAL+LRRL RL GS+P+ + ++AT A+P
Sbjct: 197 FRHLRYIVIDECHHYRGVFGSHTALVLRRLLRLARAC-GSNPTVIAASATVADPAAALSR 255
Query: 456 LANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVS 515
L + + + DGSP ++ LW P V S + R +A +E S
Sbjct: 256 LIGEPAVGVTE-DGSPRGERTIALWEPDF----VPGISGENDAPVRRSAG------AESS 304
Query: 516 YLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRI 575
L A+ V G R + F RSR+ E+ R++L +AP LVD + YRAGY+A+DRR++
Sbjct: 305 RLLADFVIEGARTLCFGRSRRGVEITALGARDLLAHSAPELVDKVAAYRAGYLADDRRKL 364
Query: 576 ERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERP--SLA 633
E+ G+L GVA TNALELG+D+ +D + G+PG++AS WQQAGR+GR+ +L
Sbjct: 365 EQAISSGELVGVATTNALELGVDISGLDAVIIAGYPGTVASFWQQAGRAGRQRTSGDALV 424
Query: 634 VYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYF 693
V VA + PLD Y + +P+ L +P+E ID N +L HL+CAA E PL E++
Sbjct: 425 VLVARDDPLDTYLVHHPQALLGTPVEAPVIDPTNRYILGPHLLCAATEFPLQDAEIEQWR 484
Query: 694 GSGL-----SSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEV 748
L + G+ + G+ ++ P +D P I IR + +
Sbjct: 485 AGELVADLAAQGLLRRRKAGWYAA-PGVD--------------PHGDIDIRGGIGGQVLI 529
Query: 749 IDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTR 808
+D ++E+L ++ +A V+ GAV++HQG TY+V EL+L +AL + + T R
Sbjct: 530 VDATTSELLGTVDAGRAPATVHPGAVHIHQGRTYVVDELDLDDGLALAHPEEPDWTTSAR 589
Query: 809 DYTDIHVSGGNNAYATKISKDQLTKTTAQALACT-----VTTTWFGFYRLWRGSGIIFDT 863
+ T+I ++ D + T AL VT G+ R SG + D
Sbjct: 590 ETTEITIT------------DVIAATDHGALHTALVDVDVTHQVVGYLRTLL-SGEVLDA 636
Query: 864 VELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSG-LHAASHALLHVVPIYVRCNFSDL 922
VEL +P+ + ++AV +P V A + + G LHAA HA + ++P+ C+ D+
Sbjct: 637 VELDMPRQTLHTRAVMYTLPPEVLAADGIDATRLPGSLHAAEHAAIGLLPLIATCDRWDI 696
Query: 923 APECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
N H P + +YD + GG G +++
Sbjct: 697 GGLSTNLHPDTGLPT-VFVYDGYLGGAGFAER 727
>gi|303246774|ref|ZP_07333051.1| Protein of unknown function DUF1998 [Desulfovibrio fructosovorans
JJ]
gi|302491791|gb|EFL51671.1| Protein of unknown function DUF1998 [Desulfovibrio fructosovorans
JJ]
Length = 981
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 237/715 (33%), Positives = 375/715 (52%), Gaps = 80/715 (11%)
Query: 248 LKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMF 307
L GIS+LY+HQA ++ + AG++V VAT T+SGK++ Y LPVLE ++ + S A++++
Sbjct: 69 LAGRGISRLYTHQAAAVDLARAGRHVAVATPTASGKTMTYLLPVLEEIAQNPDSRAIFLY 128
Query: 308 PTKALAQDQLRALLAMTKAFDAS--IDIGVYDGDTTQKDRMWLRDNA-RLLITNPDMLHM 364
P KALAQDQL+A+ +T A AS ++DGDTT R +RDN ++LITNP+MLH+
Sbjct: 129 PLKALAQDQLKAINELTAALPASSRPTAAIFDGDTTPHFRRKIRDNPPQILITNPEMLHL 188
Query: 365 SILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRR 424
S+LP H +S + + L VV+DE H Y+G G H A + RR
Sbjct: 189 SLLPGHEAWSTVFAGLT-------------------HVVVDEMHTYRGVMGSHMAHVFRR 229
Query: 425 LCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTS 484
L R+C+ +G+ P+FVFS+AT NP E L L +E + G+P + F+ NP
Sbjct: 230 LLRVCAR-FGARPAFVFSSATIGNPGELAASLTGLP-VETVTASGAPTGSRHFLFINPEQ 287
Query: 485 CLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSY 544
SP + L A ++ GLR I + +SR++ EL+ +
Sbjct: 288 ------------------------SPSTTAVMLLAAALKRGLRTIVYTQSRRMTELISLW 323
Query: 545 TREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDV 604
I E P+ + YR+G++ E+RR IE G+L GV +T+ALELGID+G +D+
Sbjct: 324 ---ISERAGPY-ASRVSAYRSGFLPEERRAIEASMASGELLGVVSTSALELGIDIGGLDL 379
Query: 605 TLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHID 664
+ G+PGS+ S WQ+ GR GR R S +A E LDQYFM++P F+ P E I+
Sbjct: 380 CVLCGYPGSVMSAWQRGGRVGRALRESAVALIAGEDALDQYFMRHPADFFERPPESAVIN 439
Query: 665 AQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFE 724
N + +HL CAA E PL+ + + ++ + L+ +G L D ++F
Sbjct: 440 PDNPVIAAKHLECAAAELPLT-VGEPLITPPAMAREVARLEGKGLLLRD---REGTRVF- 494
Query: 725 YIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLV 784
K P +++R S I+ S V+ +I+E +A+ + + GAVY+H+G +Y+V
Sbjct: 495 --AARKRPHRDVNLRG--SGGQFTIETTSGAVIGQIDEQRAYRETHPGAVYIHRGVSYMV 550
Query: 785 KELNLSSKIALCQKADLKYFTKTRD--YTDI-HVSGGNNAYATKISKDQLTKTTAQALAC 841
+ L+++ + + Y T+ R T+I VSG + + +L
Sbjct: 551 ESLDIAERRVRVAPGKVDYHTRARGQKMTEILEVSGEKTVHGVPVFLGRL---------- 600
Query: 842 TVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQN-FSFRSGL 900
VT T G+ R G + V L LP +E++ +W +P+ V+ +++ F F +
Sbjct: 601 KVTETVTGYERRANRGGQLLSIVPLDLPPMVFETEGLWWVIPKDVQDELDRRLFHFMGAI 660
Query: 901 HAASHALLHVVPIYVRCNFSDLAP-ECP-NPHDSRYFPERILLYDRHPGGTGVSK 953
HA HA++ ++P+ V + +DL P +P R + +YD PGG G+S+
Sbjct: 661 HAMEHAMIGILPLLVLTDRNDLGGISIPLHPQVGRAC---VFIYDGAPGGVGLSR 712
>gi|73670308|ref|YP_306323.1| ATP-dependent helicase [Methanosarcina barkeri str. Fusaro]
gi|72397470|gb|AAZ71743.1| ATP-dependent helicase [Methanosarcina barkeri str. Fusaro]
Length = 912
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 242/747 (32%), Positives = 378/747 (50%), Gaps = 57/747 (7%)
Query: 217 QGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVA 276
+ Q+VH E I AR+A+ P L K+AL GI LY HQAE+I GK++V+
Sbjct: 17 ENQIVHNEKIPAREALYA--PLTLKPQVKAALSGIGIEDLYVHQAEAIEIIREGKDIVLC 74
Query: 277 TMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVY 336
T T+SGKSL Y +P+ E + ++ ++ALY+ P AL DQL++ L + + I Y
Sbjct: 75 TTTASGKSLTYMIPIFETILNEPEATALYISPLNALVNDQLKSFLEFEEKLKSDAGIARY 134
Query: 337 DGDTTQKDRMWLRDN-ARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLI 395
G ++ ++ +R+ +++TNP+M+HMS L +H + R SNLR
Sbjct: 135 TGALSEAEKRKVREGQTNVVLTNPEMIHMSFLAWHHLWRRFFSNLR-------------- 180
Query: 396 FLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCME 455
F+V+DE+H Y+G G + A + RRL R+ + YGS P F+ +AT NP EH E
Sbjct: 181 -----FIVVDESHYYRGVIGSNMANLFRRLLRVAEY-YGSSPQFICCSATIGNPEEHT-E 233
Query: 456 LANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVS 515
+ ++ N+GS + FV WNP + S SE S
Sbjct: 234 ILIGRKAAVVDNNGSFQGSQQFVFWNPP-------------LYQNNKGCTLRRSSFSEAS 280
Query: 516 YLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRI 575
LF++ VQ GL+ +AF RSR+ E + RE+L + +L +IC YR+GY +R I
Sbjct: 281 SLFSKAVQAGLQTLAFTRSRQGVERMYKSCRELLR--SRNLSPAICSYRSGYFDREREEI 338
Query: 576 ERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVY 635
E+ G+L GV +TNALELGID+G +D + G+PG++ S QQAGR+GR SL +
Sbjct: 339 EKKMNSGELRGVISTNALELGIDIGGLDACILDGYPGTVMSARQQAGRAGRSGNESLVIL 398
Query: 636 VAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGS 695
VA LDQY+M+ P F E ++ +N +L HL+CAA E PL DEK+FG
Sbjct: 399 VAGTNALDQYYMRNPTDFFTRSSENAVLNPKNPYILAGHLLCAAKEVPLQ-ASDEKFFGK 457
Query: 696 GLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNE 755
+ + L+ G L+ D L S F Y +S+R I+ Y ++ + +
Sbjct: 458 EYARVVELLEAEGLLAGD-DLKYSTDPFPY--------KHVSLRGIDDNTYSLLAFEGEK 508
Query: 756 ---VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTD 812
+ + IEE+ AF + + GAVYMH+G +Y + ++ K K Y+TK +
Sbjct: 509 RFPIEKNIEETLAFRECHPGAVYMHRGESYYINRIDHEKKEIHAIKTHDTYYTKPMIDSS 568
Query: 813 IHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYS 872
+ V YA K ++ VT G+ ++ S + L +P S
Sbjct: 569 VLV---QETYAVK-PLLHASEVEIGLGEVEVTDRVIGYRKIQTQSNDVMSAHSLEMPPVS 624
Query: 873 YESQAVWIQVPQSVKAVV-EQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHD 931
++ A+W+++P ++ +V E F G+HA HA++ + P+++ + SD+ H
Sbjct: 625 LQTMALWLKLPDRLQELVGEHKLDFAGGIHAIEHAMISMYPLHLLVDRSDVGGVSTPSHP 684
Query: 932 SRYFPERILLYDRHPGGTGVSKQVTDM 958
I +YD H GG G +++ D+
Sbjct: 685 DLGGKSGIFIYDGHRGGVGYAEKGYDL 711
>gi|379058504|ref|ZP_09849030.1| helicase family protein with metal-binding cysteine cluster
[Serinicoccus profundi MCCC 1A05965]
Length = 783
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 247/750 (32%), Positives = 381/750 (50%), Gaps = 81/750 (10%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATM 278
++ HV + AR+ P K+AL GI ++HQAE + AG++V+V+T
Sbjct: 37 RLRHVRTVPAREGRTAPWPSWCAPTVKAALLGHGIDAPWAHQAEVAELAHAGRHVIVSTG 96
Query: 279 TSSGKSLCYNLPVLEALSHDLSS------SALYMFPTKALAQDQLRALLAMTKAFDASID 332
T+SGKSL Y +PVL LS + +ALY+ PTKAL Q L A+ +
Sbjct: 97 TASGKSLGYLIPVLTELSDGTGAVTGRGATALYLAPTKALGAGQESRLQALAVP---DVR 153
Query: 333 IGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEV 392
+ DGDT ++R W+R++A ++TNPD+LH ++LP H +++ L LR
Sbjct: 154 VARLDGDTPSEERRWIREHAHYVLTNPDLLHHTLLPGHERWAPFLRALR----------- 202
Query: 393 YLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREH 452
+VV+DE H Y+G FG H + +LRRL R+ + YG+ P+ V ++AT A P
Sbjct: 203 --------YVVVDECHIYRGVFGAHVSAVLRRLLRVAAR-YGATPTVVLASATVAEPEPL 253
Query: 453 CMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPIS 512
L + + D SP + + LW P +++D R S +
Sbjct: 254 ARALTGQDVVA-VTADASPRREAVVALWQPG------------ELEDGRR-----RSTLG 295
Query: 513 EVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDR 572
EV+ L ++V ++ +AF RSR E V S R+ E + I YR GY+ E+R
Sbjct: 296 EVADLLTDLVSSDVQTVAFARSRVGVEQVASRARQAREARS-GTAAGIAAYRGGYLPEER 354
Query: 573 RRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSL 632
R +E + G+AAT+ALELGID+ +D + G+PG+ AS WQQ GR+GR PSL
Sbjct: 355 RELESALRERTVMGLAATSALELGIDIAGLDAVVMAGWPGTRASFWQQVGRAGRSGSPSL 414
Query: 633 AVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKY 692
AV VA + PLD Y + +PE +F++P+E C +D +N VL HL AA E PL+ DE +
Sbjct: 415 AVLVAADDPLDTYLLTHPELIFEAPVETCVLDPENPYVLGPHLAAAAAELPLTEA-DECW 473
Query: 693 FGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQ 752
FG GL + L G L + P+ Y + +++R + +++D +
Sbjct: 474 FGPGLRALAEQLVVGGVLRARPT-------GWYWARPDRATDHVALRG-AGQTVQIVDAR 525
Query: 753 SNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTD 812
S VL ++E++A V++GAVY+HQG Y+V EL+L +AL D + T+ R +
Sbjct: 526 SGRVLGTVDEARALTTVHQGAVYVHQGEPYVVTELDLDGSVALVVAGDPGWSTRARSEST 585
Query: 813 IHVSGGNNAYATKISKDQLTKTT--AQALACT---VTTTWFGFYRLWRGSGIIFDTVELY 867
+ ++Q T+ + A +LA VTT F R+ G + T L
Sbjct: 586 FSI------------REQQTRQSWGAASLATGKVEVTTQVTAFQRVLT-DGTVIGTHPLD 632
Query: 868 LPKYSYESQAVWIQVP---QSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAP 924
LP + +QAVW +P ++ V EQ+ LHAA HA + ++P+ C+ D+
Sbjct: 633 LPARTLVTQAVWWTLPLEELALAGVAEQDVP--GALHAAEHASIGMLPLLATCDRWDIGG 690
Query: 925 ECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
H P +++YD +PGG G S++
Sbjct: 691 VSTALHPDTGLPT-VMVYDGYPGGAGFSRR 719
>gi|111021326|ref|YP_704298.1| helicase [Rhodococcus jostii RHA1]
gi|110820856|gb|ABG96140.1| possible helicase [Rhodococcus jostii RHA1]
Length = 787
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 252/744 (33%), Positives = 378/744 (50%), Gaps = 70/744 (9%)
Query: 225 DISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKS 284
++ AR + L E P + A++ GI + ++HQA + + G NVVV+T T+SGKS
Sbjct: 42 EMPARTSQLSEWPAWAHPSVVRAMQENGIPRPWTHQATAADLAHHGTNVVVSTGTASGKS 101
Query: 285 LCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAM--TKAFDASIDI-GV----YD 337
L Y LPVL L+ D ++ALY+ PTKAL DQLRA+ ++ ++ DA D+ GV +D
Sbjct: 102 LAYQLPVLTTLATDPRATALYLSPTKALGADQLRAVTSLIDSEVLDAGDDLRGVRPCMFD 161
Query: 338 GDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFL 397
GDT + R W R+N+R L TNPDMLH+S+L H +++ NL
Sbjct: 162 GDTPLEVRHWARENSRWLFTNPDMLHISLLRTHQRWAHFFRNLA---------------- 205
Query: 398 FIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELA 457
+VVIDE H+Y+G FG + AL+L RL R+ + YG++P FV ++AT+A+P L
Sbjct: 206 ---YVVIDECHSYRGVFGSNVALVLLRLRRIAAR-YGAEPVFVLASATTADPGAAASRLI 261
Query: 458 NLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYL 517
E+++ DGSP + LW P +R V ++ + + R A SE + +
Sbjct: 262 GAPCAEVVE-DGSPHGPRTVALWEP-PLMREVTGENGSPV---RRPAG------SEAARI 310
Query: 518 FAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIER 577
A+++ G R + F RSR+ EL T+ +L E P L + YRAGY+AEDRR +E
Sbjct: 311 MADLMVEGARTLTFVRSRRGAELTAMATKRLLGEIDPELSSRVASYRAGYLAEDRRELET 370
Query: 578 DFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVA 637
G L G A TNALELG+D+ +D + GFPG++AS WQQ GRSGRR SL V +A
Sbjct: 371 ALADGTLLGAATTNALELGVDIAGLDAVVVAGFPGTVASFWQQGGRSGRRGEGSLVVLIA 430
Query: 638 FEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKY----- 692
+ PLD Y + +P L P+E D N VL L+CAA+E PLS E +
Sbjct: 431 RDDPLDTYLVHHPSALLDKPVEATVTDPSNPYVLGPQLLCAAMELPLSDAEAEAFGAIDV 490
Query: 693 FGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQ 752
G G+ + G+ ++ P + IR + ++ +
Sbjct: 491 LGKLAEQGLIRRRAHGW---------------FVTAGTNPHGAVDIRGGIGTQVAIVVSE 535
Query: 753 SNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTD 812
S +L ++ +A + GAV++HQG +Y+V EL+L +AL D + T R+ T+
Sbjct: 536 SGRMLGTVDTGRAPATAHPGAVHIHQGESYVVDELDLDQGLALVHAEDPDWTTSARETTE 595
Query: 813 IHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYS 872
I V+ + + + Q + VT G+ R SG + D VEL +PK +
Sbjct: 596 ITVT-------SVLEQKQFGDVEVALVEVEVTHQVIGYLRRLP-SGEVLDAVELDMPKQT 647
Query: 873 YESQAVWIQVPQS--VKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPH 930
++AV V V+A V LHAA HA + ++P+ C+ D+ H
Sbjct: 648 LPTRAVMYTVTPELLVRAGVPAE-RVPGSLHAAEHAAIGLLPLVAVCDRGDIGGVSTAVH 706
Query: 931 DSRYFPERILLYDRHPGGTGVSKQ 954
P + +YD H GG G + +
Sbjct: 707 ADTGLPT-VFVYDGHAGGAGFADR 729
>gi|320160861|ref|YP_004174085.1| putative ATP-dependent helicase [Anaerolinea thermophila UNI-1]
gi|319994714|dbj|BAJ63485.1| putative ATP-dependent helicase [Anaerolinea thermophila UNI-1]
Length = 844
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 265/831 (31%), Positives = 411/831 (49%), Gaps = 152/831 (18%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+V +E+I R A+ IP++L + K+AL S GI++LYSHQ ++ G +V++AT T
Sbjct: 21 IVRIEEIPPRPALWGNIPESLHPDLKNALHSLGINQLYSHQVQAYELIHQGNHVMLATGT 80
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQ---LRALLAMTKAFDASIDIGVY 336
+SGK+L YNLPVL+ SS ALY+FPTKALAQDQ L LL + I +G+Y
Sbjct: 81 ASGKTLAYNLPVLDDCLKHPSSRALYLFPTKALAQDQQTQLAKLLQSHTSLPKQIPVGIY 140
Query: 337 DGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIF 396
DGDT R LR NAR++++NPDMLHM ILP+H ++ NLR
Sbjct: 141 DGDTPASHRNDLRKNARIVLSNPDMLHMGILPHHTLWAEFFRNLR--------------- 185
Query: 397 LFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMEL 456
F++IDEAH Y+G FG H A ++RRL R+ S YG+ P F+ S+AT ANP L
Sbjct: 186 ----FIIIDEAHIYRGVFGSHFANVIRRLKRVAS-FYGASPQFILSSATIANPLPFAQSL 240
Query: 457 ANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSY 516
++LI DGSP + L+NP V+N+ +S I E
Sbjct: 241 IE-DKIQLISQDGSPAGPRRIFLYNP-----PVINEH----------LGIRASAIHEALK 284
Query: 517 LFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIE 576
L + ++ HG++ I F R+R+ EL+L Y R+ +P ++ YR+GY+ +RR IE
Sbjct: 285 LLSPLITHGIQTITFARTRRTVELLLRYLRDRFP-GSPQWIEG---YRSGYLPTERRTIE 340
Query: 577 RDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYV 636
G++ V ATNALELGID+G + ++ +G+PGSIAS QQ GR+GR+ ++++ V
Sbjct: 341 AKLRKGEIHCVVATNALELGIDIGTLSASVLVGYPGSIASTRQQIGRAGRKTDLAVSLLV 400
Query: 637 AFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSG 696
A PLDQY M++PE +F+ E +D N +L QH+ CAA E P Y + FG
Sbjct: 401 ASSDPLDQYLMRFPEYIFEQSPEMALVDPNNLLILVQHIRCAAFELPF---YRGEGFGG- 456
Query: 697 LSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERY---EVIDMQS 753
S T + +L+ L + F + ++ P+ IS+R + ++ID +
Sbjct: 457 -VSAETVEEILSFLAESGELHAGTTRFIWTA-DQYPASQISLRTTSPDTVQLQQIIDGKP 514
Query: 754 NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDI 813
+V+ ++ S A + V+ GAVY+H G TY V+ L+L IA + ++L Y+T+ T +
Sbjct: 515 -KVVGVVDRSSALWMVHPGAVYLHAGETYWVQTLDLDRGIAWLEPSELDYYTEPVQETTV 573
Query: 814 H---------VSGGNNAYA-----------TKI---SKDQLTKTTAQALACTVTTTWFGF 850
GGN + KI S++ L + + T+ TT G+
Sbjct: 574 EKQQVLYNEPTRGGNKFFGELKVTHQVTGFKKIRWYSRENLGTESLELPPSTLFTT--GY 631
Query: 851 YR--------LWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVK----------AVVEQ 892
+R R +G+ + Y P+ WI++ +S++ EQ
Sbjct: 632 WRSLSEVSVNFLRQAGLWRNDPNDYGPE--------WIKIRESIRKRDHYTCQLCGTPEQ 683
Query: 893 ----------------------------------------NFSFRSGLHAASHALLHVVP 912
N +SGL S+ + H P
Sbjct: 684 GKAHHVHHKVPFRMFSSAQEANRPENLITLCPSCHQRVEENQRIQSGLAGLSYLIHHAAP 743
Query: 913 IYVRCNFSDLA----PECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDMK 959
+++ C+ D+ P+ P +++YD+ PGG G+SK++ +++
Sbjct: 744 LFLMCDTEDIGVFSEPQSPLSDGQ----PTLVVYDQIPGGIGLSKKLYEIE 790
>gi|403509316|ref|YP_006640954.1| DEAD/DEAH box helicase family protein [Nocardiopsis alba ATCC
BAA-2165]
gi|402799583|gb|AFR06993.1| DEAD/DEAH box helicase family protein [Nocardiopsis alba ATCC
BAA-2165]
Length = 760
Score = 384 bits (987), Expect = e-103, Method: Compositional matrix adjust.
Identities = 249/738 (33%), Positives = 390/738 (52%), Gaps = 54/738 (7%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATM 278
Q+ H+E ++ + + P + L GI+K +SHQA + + +G++V++AT
Sbjct: 14 QVTHIEHVTRNEGESGDWPTWTAPRLVARLAERGITKPWSHQAAAADLARSGRDVIIATG 73
Query: 279 TSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDG 338
T+SGKSL + LP ++A+ D + LY+ PTKALAQDQLR + T + + VYDG
Sbjct: 74 TASGKSLAFLLPAVDAI--DAGGTVLYLSPTKALAQDQLRWI---TDLGLSGMRAAVYDG 128
Query: 339 DTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLF 398
DT++++R W+R++A ++TNPDMLH +LP H ++R L LR
Sbjct: 129 DTSREERSWVREHANYVLTNPDMLHHGMLPGHPAWTRFLRRLR----------------- 171
Query: 399 IRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELAN 458
+VVIDEAH Y+G FG H + ILRRL RLC+ S+P FV ++ATS +P E L
Sbjct: 172 --YVVIDEAHRYRGVFGSHVSQILRRLRRLCARHR-SEPVFVLASATSGSPAESAGRLTG 228
Query: 459 LSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLF 518
+ + + DGSP L P TDM + A + ++P S+ + +
Sbjct: 229 VPVVA-VSEDGSPRPGMSVALVEP----------ELTDMTGEQGAPIRRTAP-SQAAEML 276
Query: 519 AEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LVDSICVYRAGYVAEDRRRIER 577
A++V G+R + F RSR+ E+V T+ +L E LVD + YR GY+A DRR +E
Sbjct: 277 ADLVIEGVRTLVFVRSRQGAEVVALNTQRLLAERGEKDLVDRVAAYRGGYLAGDRRALEE 336
Query: 578 DFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVA 637
G+L G+A+TNALELG+D+ +D L G+PG++ASLWQQAGR+GRR +LAV++A
Sbjct: 337 ALRTGELLGLASTNALELGVDISGLDAVLIAGWPGTLASLWQQAGRAGRRGGDALAVFIA 396
Query: 638 FEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGL 697
+ PLD Y +PE +F +E +D +N +L HL AA E P++ D FG
Sbjct: 397 RDDPLDTYLAHHPEAIFGRSVEATVLDPENPHILGPHLCAAAQELPITH-EDFSLFGGTT 455
Query: 698 SSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVL 757
+ L G L P + + + +E+ S IR +++D S ++L
Sbjct: 456 GERLDDLVAGGLLRKRP------RGWFWTSNERA-SDLADIRGSGGAPVQIVDTGSGQLL 508
Query: 758 EEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSG 817
EI+E+ A V+ GAVY+HQG T+LV EL+L+ +AL +A+ Y T RD TDI +
Sbjct: 509 GEIDEAAAHGTVHPGAVYLHQGVTHLVDELDLTEGVALVHEAEPPYSTWARDTTDITIR- 567
Query: 818 GNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQA 877
+ + + T V G+ + +G + L +P+ + +++A
Sbjct: 568 -----SELRGESWPSGATVHFGEVEVVRRVVGYLKRDVRTGAVLGEQPLDMPERTLQTRA 622
Query: 878 VWIQVPQSVKAVVE-QNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFP 936
VW + Q + + Q+ HAA HA + ++P+ C+ D+ + H P
Sbjct: 623 VWWTLDQDAENRLRGQDVGLLGAAHAAEHASIGLLPLLATCDRWDIGGVSTSLHADTGRP 682
Query: 937 ERILLYDRHPGGTGVSKQ 954
+ +YD + GG G +++
Sbjct: 683 T-VFVYDGYEGGAGFAER 699
>gi|227505645|ref|ZP_03935694.1| possible ATP-dependent helicase [Corynebacterium striatum ATCC
6940]
gi|227197798|gb|EEI77846.1| possible ATP-dependent helicase [Corynebacterium striatum ATCC
6940]
Length = 798
Score = 384 bits (986), Expect = e-103, Method: Compositional matrix adjust.
Identities = 251/745 (33%), Positives = 382/745 (51%), Gaps = 67/745 (8%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
+ A+ A P+ +L ++ L+ + KLYSHQ + G +VVVAT TSSGKSL
Sbjct: 39 LPAKPASYAPWPEWVLPGLRTFLEGRDVHKLYSHQVAVAERAWQGNDVVVATGTSSGKSL 98
Query: 286 CYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDA--SIDIGVYDGDTTQK 343
Y LP+L AL+ D ++ ALY+ PTKAL DQL ++L M++ + + YDGDT +
Sbjct: 99 GYLLPILTALASDPTACALYLTPTKALGSDQLHSVLQMSREVEELHGMVAAPYDGDTPTE 158
Query: 344 DRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVV 403
R +RD+AR + +NPDM+HMS+L H +++R L +LR F+V
Sbjct: 159 ARAGIRDDARFIFSNPDMIHMSMLASHQRWARFLRHLR-------------------FIV 199
Query: 404 IDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLE 463
IDE H+Y+G FG + AL+LRRL RLC H YG+ P + ++AT +P H L T E
Sbjct: 200 IDECHSYRGVFGANVALVLRRLLRLCDH-YGARPVVISASATMKDPAIHAQRLTGRKTRE 258
Query: 464 LIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQ 523
+ + DG+P + LW P + ++ + N A + +E + + A V
Sbjct: 259 VTE-DGAPTGARTVALWEP-----GFIEGAEGE-----NGAPVRRAATTEAAGMMATFVA 307
Query: 524 HGLRCIAFCRSRKLCELVLSYTREILEET--APHLVDSICVYRAGYVAEDRRRIERDFFG 581
G R + F RSR+ E+V T E L P I YRAGY+AEDRR++E+
Sbjct: 308 EGARTLTFVRSRRAAEVVALRTAEDLSGALGRPDFARRIAAYRAGYLAEDRRKLEKALDS 367
Query: 582 GKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGP 641
G+L GVA T+ALELGIDVG +D + GFPG++AS WQQAGR+GRR + S+ V VA + P
Sbjct: 368 GELLGVATTSALELGIDVGGLDAVITAGFPGTVASFWQQAGRAGRRGQGSVVVLVARDEP 427
Query: 642 LDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGI 701
+D Y + +P+ L P+E + N +L H+ CAA+E PL D + G +
Sbjct: 428 MDTYLVHHPDALLGKPVETSVFNPANPYILFGHVYCAAVEKPLQ---DAEIEQLGAHDVV 484
Query: 702 TTLKNRGYLSSDPSLDSSAKIFEYIGHEKMP--SH-TISIRAIESERYEVIDMQSNEVLE 758
L RG L +A I G E P +H +S+R E ++D +L
Sbjct: 485 HALAERGLLRRRDRGWFAAPI--PAGEELTPETAHAAVSLRGGSGEEVMIVDASDGRLLG 542
Query: 759 EIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIH---- 814
I+ ++A QV+ GAVY+HQG +Y+++EL+ + +AL + +Y T R TDI
Sbjct: 543 TIDAARAASQVHPGAVYLHQGESYVIEELHFADYLALAKPDTPEYTTTPRSTTDIRIVRE 602
Query: 815 ----VSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPK 870
V+ + + + + + T Y++ G + D + L +P+
Sbjct: 603 ADELVNYAPGLWVANVEVEVIDQVTG--------------YQVRLPDGTVGDDIALEMPQ 648
Query: 871 YSYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNP 929
++AV + P ++ A+ LHAA HA + ++P+ C+ D+
Sbjct: 649 QRLHTRAVAYTIDPLALAAMGVTAADTPGTLHAAEHAAIGLLPLIATCDRWDIGGVSTAQ 708
Query: 930 HDSRYFPERILLYDRHPGGTGVSKQ 954
H P + +YD HPGG G + +
Sbjct: 709 HADTGLPT-VFVYDGHPGGAGFADE 732
>gi|220913896|ref|YP_002489205.1| Helicase superfamily 1 and 2 ATP-binding [Arthrobacter
chlorophenolicus A6]
gi|219860774|gb|ACL41116.1| Helicase superfamily 1 and 2 ATP-binding [Arthrobacter
chlorophenolicus A6]
Length = 795
Score = 384 bits (986), Expect = e-103, Method: Compositional matrix adjust.
Identities = 250/774 (32%), Positives = 387/774 (50%), Gaps = 78/774 (10%)
Query: 201 LLPLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQ 260
LLPL L +G + Q+ HV I AR A+ P+ + + +A S GI + Y HQ
Sbjct: 7 LLPL-----LGRGPDPE-QLRHVRTIPARAAIHEPWPEWVHPDLVAAYGSLGIGEPYRHQ 60
Query: 261 AESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALS-------------HDLSSSALYMF 307
E+ + G +VVVAT T+SGKSL Y LP L+A+ HD + LY+
Sbjct: 61 VEAAEIAHGGGHVVVATGTASGKSLAYQLPALDAIHRSELRVLAEPGKIHDDGAVTLYLS 120
Query: 308 PTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSIL 367
PTKALA DQL A+ A+ ++ YDGDT R W+RD+A ++ NPDMLH IL
Sbjct: 121 PTKALAADQLNAIRALRLP---TVRAETYDGDTDPASRRWIRDHANFILANPDMLHFGIL 177
Query: 368 PYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCR 427
P H ++ F +R+V++DEAH+Y+G FG H A ++RRL R
Sbjct: 178 PNHAWWAGF-------------------FRRLRYVIVDEAHSYRGVFGSHVANLMRRLRR 218
Query: 428 LCSHVYGS-----DPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNP 482
+C++ YG+ +P F+ ++AT+++P L + ++ + D SP W P
Sbjct: 219 ICAY-YGAGSSFPEPVFIAASATASDPDTSFSRLIG-APVKAVSRDASPHGSTTVAFWEP 276
Query: 483 T-SCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELV 541
+ LR N AN+ + ++E + L A +V +R IAF +SR+ E +
Sbjct: 277 ALTELRG------------ENGANERRTAVAETADLLANLVSAQVRTIAFIKSRRGAETI 324
Query: 542 LSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGH 601
+ T+ +L+E P L + YR+GY+ E+RR +E+ G+L GV++T+ALELGID+
Sbjct: 325 STITKRLLDEVDPSLPQRVAAYRSGYLPEERRAVEKALRSGQLLGVSSTSALELGIDISG 384
Query: 602 IDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECC 661
+D L G+PG+ ASL+QQ GR+GR + ++A +VA + PLD + + +PE +F +E
Sbjct: 385 LDAVLVAGWPGTRASLFQQIGRAGRGGQDAIAAFVASDDPLDTFLVNHPEAIFDVSVEAT 444
Query: 662 HIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAK 721
D N VL HL AA E PL + FG+ + L +GYL P+
Sbjct: 445 VFDPANPYVLGPHLCAAAAELPLG-PGELGLFGNTAEGLLDRLVAQGYLRRRPA------ 497
Query: 722 IFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHT 781
+ H + + +++RA ++D + +L ++ + +Q + GAVY+HQG +
Sbjct: 498 -GWFWTHPQSAAAMVNLRADGGGPVSIVDADTGSLLGTMDSPQTHYQAHNGAVYIHQGDS 556
Query: 782 YLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALAC 841
Y+V++LN + ++A+ Y+T RD T I V T+ + Q T
Sbjct: 557 YVVEDLNEEDHCVVVRRANPDYYTTARDVTQIEV------LETQRTM-QWGDITVHFGDV 609
Query: 842 TVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVP-QSVKAVVEQNFSFRSGL 900
VTT F R S I L L ++AVW V +S+ A F L
Sbjct: 610 KVTTQVVSFQRKALISNEILGEEPLELGARDLFTKAVWFVVDNRSLTAAGLIEAQFPGAL 669
Query: 901 HAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
HAA HA + ++P+ + D+ H P I +YD HPGG G +++
Sbjct: 670 HAAEHAAIGLLPLVASSDRWDIGGVSTALHADTGVPT-IFVYDGHPGGAGFAER 722
>gi|145596544|ref|YP_001160841.1| DEAD/DEAH box helicase [Salinispora tropica CNB-440]
gi|145305881|gb|ABP56463.1| DEAD/DEAH box helicase domain protein [Salinispora tropica CNB-440]
Length = 802
Score = 384 bits (986), Expect = e-103, Method: Compositional matrix adjust.
Identities = 256/753 (33%), Positives = 378/753 (50%), Gaps = 50/753 (6%)
Query: 203 PLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAE 262
P E++ LR + + HVE + AR P + + +A G+ + HQAE
Sbjct: 31 PTELLGQLRARHDAD-PVTHVERVPARAGEPAPWPSWVPADLHAAFTRQGVETPWQHQAE 89
Query: 263 SIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLA 322
+ + G +VVVAT T+SGKSL Y LP L L D ++ LY+ PTKALA DQLRA+
Sbjct: 90 AADLAHTGSHVVVATGTASGKSLAYQLPALSTLLTDPRATVLYLAPTKALAVDQLRAITE 149
Query: 323 MTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRL 382
+ D + YDGDT + +R W+R +AR ++TNPDMLH ILP H Q++R L L
Sbjct: 150 LE--LD-GVRPACYDGDTPRAEREWIRQHARFVLTNPDMLHHGILPGHAQWTRFLRRLA- 205
Query: 383 IAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFS 442
+VV+DE H+Y+G FG A +LRRL R C+ + G P FV +
Sbjct: 206 ------------------YVVVDECHSYRGVFGSQVAHVLRRLRRQCTRI-GRTPVFVLA 246
Query: 443 TATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRN 502
+ATS +P L L + + D SP F LW P + + TD+ R
Sbjct: 247 SATSGDPAVTAERLTGLP-VAAVTGDTSPRGGVTFALWEPPTLPTPTTSPDDTDLAPVRR 305
Query: 503 AANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICV 562
+A + E + L A+ V G+R +AF RSR+ E V + R L+E L + +
Sbjct: 306 SA------LRETADLLADAVAAGVRTLAFVRSRRGAEAVAANARRALDEAVSGLGNQVAA 359
Query: 563 YRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAG 622
YRAGY+ E+RR +ER G+L G+A+TNALELG+D+ +D L G+PG+ ASLWQQAG
Sbjct: 360 YRAGYLREERRELERSLLSGELRGLASTNALELGVDLVGLDAVLICGYPGTRASLWQQAG 419
Query: 623 RSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEH 682
R+GR + +LAV VA + PLD Y + +PE +F +P+E +D N VL L CAA E
Sbjct: 420 RAGRSGQEALAVLVARDDPLDSYLVHHPEAVFGAPVEATVLDPTNPYVLGPQLACAAAEA 479
Query: 683 PLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIE 742
PL+ D FG G + L G L P+ Y H + P + +R +
Sbjct: 480 PLTPA-DLDLFGDGAKEAVDALVEAGALRQRPT-------GWYWRHRERPQ--VELRGGD 529
Query: 743 SERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLK 802
V++ + +L ++ + F ++ GAVY+HQG +Y+V L+L+ AL +
Sbjct: 530 GAPICVVETATGRLLGTVDGGSSHFLLHPGAVYLHQGVSYVVDTLDLADGCALVHPEEPD 589
Query: 803 YFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFD 862
+ T RD T + V A + + + + VT+ + R +G + D
Sbjct: 590 WSTHARDVTSLSVV----AVRSYVDAGPVGLFLGE---VDVTSQVVSYQRRRIATGEVID 642
Query: 863 TVELYLPKYSYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSD 921
T L LP + AVW + P+S+ A LHAA HA + ++P+ C+ D
Sbjct: 643 TRPLDLPARELRTVAVWFTLSPESLTASGVDPADVPGALHAAEHAAIGLLPLTATCDRWD 702
Query: 922 LAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
+ H P + +YD H GG G +++
Sbjct: 703 IGGLSTAMHPDTGAPT-VFVYDGHSGGAGFAER 734
>gi|108803360|ref|YP_643297.1| DEAD/DEAH box helicase [Rubrobacter xylanophilus DSM 9941]
gi|108764603|gb|ABG03485.1| DEAD/DEAH box helicase-like protein [Rubrobacter xylanophilus DSM
9941]
Length = 739
Score = 384 bits (986), Expect = e-103, Method: Compositional matrix adjust.
Identities = 252/742 (33%), Positives = 384/742 (51%), Gaps = 72/742 (9%)
Query: 223 VEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSG 282
V + R A LVE P L + AL+ G+++LYSHQ E+ G+NVVVAT T+SG
Sbjct: 2 VASLGPRPASLVEPPGDLHPALREALRRGGMARLYSHQREAYERLRCGENVVVATATASG 61
Query: 283 KSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFD-ASIDIGVYDGDTT 341
KSLCY L + + + S AL+++PTKALAQDQL +AF + YDGDT
Sbjct: 62 KSLCYKLFAFQGVLEEPRSRALFLYPTKALAQDQL----GKIRAFGLRGVRPATYDGDTP 117
Query: 342 QKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRF 401
Q R +R A +++TNPDML + ILP H + L LR++A
Sbjct: 118 QPLRADIRRRANVVLTNPDMLSVGILPNHDAWGPFLRGLRVVA----------------- 160
Query: 402 VVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLST 461
+DEAH +G FG H A +LRRL + ++G DP FV ++AT ANP+E L L
Sbjct: 161 --VDEAHVLRGVFGSHVAAVLRRLR-RLARLHGGDPRFVLTSATIANPQELAETLTGLP- 216
Query: 462 LELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEM 521
++ DG+P ++ V NP +L++ + + S ++E + +FA +
Sbjct: 217 FSPVERDGAPSGERRVVFRNP-----PLLDRER----------GERRSLLTEGALVFAAL 261
Query: 522 VQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFG 581
V G+R IAF R+R+ EL+ Y + L P I YRAGY +RR IE F
Sbjct: 262 VSQGVRTIAFARTRRAAELIYRYAADRL---GPEGARRISPYRAGYTPGERREIEGRLFR 318
Query: 582 GKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGP 641
G+L GV +TNALELG+DVG +D + G+PGS+AS+WQQ GR+GR E SLAVY+
Sbjct: 319 GELLGVVSTNALELGVDVGSLDAAICCGYPGSVASVWQQWGRAGRGEGASLAVYIPGRDA 378
Query: 642 LDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGI 701
LDQ+ + P+++ +E + N +L HL+ AA E PL DE++FG
Sbjct: 379 LDQFLYENPQRILGRRVEAARLTLDNPYILAPHLLAAAREAPLE-PEDEEFFGPQYGRVA 437
Query: 702 TTLKNRGYLSSDPSLDSSAK-IFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEI 760
L+ G L L S + ++ +G P+ IS+R+ SE + D + E++
Sbjct: 438 GELEEAGAL-----LRSGGRLVYAGVGS---PARGISLRSASSETVVIADGE-GELVGTA 488
Query: 761 EESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNN 820
E ++A +++ GAVY+H+G Y V+ L+L+++ AL ++ +++T+ R TD+ +
Sbjct: 489 EAARAPSELHPGAVYLHRGAAYEVERLDLAARRALVRRVPDRFYTRPRVETDVEI----- 543
Query: 821 AYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVE-----LYLPKYSYES 875
++ + L+ TT Y+ R + D E L LP+ S E+
Sbjct: 544 --LEELERRPLSGGALLHRGRVRTTDAVTHYKKVR----VADDREVGVFPLDLPEVSLET 597
Query: 876 QAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYF 935
QA+W+ +P F LHAA H L+ ++P++ C+ +D+ H
Sbjct: 598 QALWVTLPPPPPEGRPSFEGFGGALHAAEHGLIGLLPLFAMCDRADIGGLSTPVHRQTGR 657
Query: 936 PERILLYDRHPGGTGVSKQVTD 957
P I +YD +PGG G++ + D
Sbjct: 658 PT-IFVYDGYPGGVGIAHRGFD 678
>gi|325002267|ref|ZP_08123379.1| helicase family protein with metal-binding cysteine cluster
[Pseudonocardia sp. P1]
Length = 825
Score = 384 bits (985), Expect = e-103, Method: Compositional matrix adjust.
Identities = 241/735 (32%), Positives = 362/735 (49%), Gaps = 51/735 (6%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
HV I R PD D +S G+ + ++HQAE AG +VVVAT T+S
Sbjct: 76 HVVRIPPRPGRSTGWPDWTPDVLRSGWAGRGVDRPWAHQAEGAELVRAGADVVVATGTAS 135
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTT 341
GKSL Y LPVL L D ++ALY+ PTKALA DQLRAL + I +DGDT
Sbjct: 136 GKSLVYQLPVLTRLVEDPRATALYLAPTKALAADQLRALDDIAPD---GIRPASFDGDTP 192
Query: 342 QKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRF 401
++R W+R + R + +NPDM+H S+LP HG++S L L F
Sbjct: 193 MEERDWIRRHCRWMFSNPDMVHRSLLPRHGRWSTFLRRLE-------------------F 233
Query: 402 VVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLST 461
VV+DE H Y+G FG H AL+LRRL + YG+ P+ V ++AT A P E L
Sbjct: 234 VVVDECHTYRGVFGSHVALLLRRLL-RVAARYGAHPTVVLASATVARPAEFASRLTGRDV 292
Query: 462 LELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEM 521
+ + + DGSP A + W P +L + D N A S E + + A++
Sbjct: 293 VAVTE-DGSPHAGRTVAFWEP-----PLLAEITGD-----NGAPVRRSAGGEAARMLADL 341
Query: 522 VQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFG 581
V R +AF RSR+ EL R + + AP L D + YR GY+ E+RR +E
Sbjct: 342 VLEDARTLAFVRSRRAAELTALGARRQVADVAPELGDRVAAYRGGYLPEERRALEAALMT 401
Query: 582 GKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGP 641
G+L GVA TNALELG+D+ +D + GFPG+ AS WQQAGR+GR +L V VA + P
Sbjct: 402 GELLGVATTNALELGVDISGLDAVVVAGFPGTRASFWQQAGRAGRAADEALVVLVARDDP 461
Query: 642 LDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGI 701
LD Y + +P+ L +P+E C ++ N VL L CAA E PL+ + FG + +
Sbjct: 462 LDTYLVHHPQTLIGAPVESCVLNPVNPYVLAPQLACAAAELPLTTDDVDGIFGGAPAVEV 521
Query: 702 -TTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEI 760
L G L P + + P+ + IR + +++ + +L +
Sbjct: 522 LDALVEEGVLRRRP------HGWFWPDTGDAPAAQVDIRGSGLGQVAIVEAATGRMLGTV 575
Query: 761 EESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNN 820
+ A V+ GAV++H+G +Y+V EL+L +AL + + T+ + +D+ V
Sbjct: 576 DGGSAPGTVHPGAVHLHRGESYVVDELDLDGGVALVHPEEPDWRTEAQSVSDVTV----- 630
Query: 821 AYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWI 880
++ + + T T+ YR G + D L LP S ++++VW
Sbjct: 631 ---LEVLESRRYGPVGVCFGATTVTSQVVGYRRRTPDGTVLDQTPLDLPAQSLDTRSVWY 687
Query: 881 QV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERI 939
+ P ++ LHAA HA + ++P++ C+ D+ H P +
Sbjct: 688 TIEPDALADAGIDEARLPGALHAAEHAAIGLLPLFAICDRWDIGGLSTALHPDTGLPT-V 746
Query: 940 LLYDRHPGGTGVSKQ 954
++D HPGG G++++
Sbjct: 747 FVHDGHPGGAGLAER 761
>gi|410584503|ref|ZP_11321606.1| helicase family protein with metal-binding cysteine cluster
[Thermaerobacter subterraneus DSM 13965]
gi|410504438|gb|EKP93949.1| helicase family protein with metal-binding cysteine cluster
[Thermaerobacter subterraneus DSM 13965]
Length = 755
Score = 384 bits (985), Expect = e-103, Method: Compositional matrix adjust.
Identities = 241/730 (33%), Positives = 373/730 (51%), Gaps = 66/730 (9%)
Query: 233 LVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVL 292
V P+AL L GI++LYSHQAE++ ASLAG++VVV T T+SGK+LCY LPVL
Sbjct: 35 FVPPPEALDPRLVDWLDRRGIAQLYSHQAEAVAASLAGEDVVVVTPTASGKTLCYTLPVL 94
Query: 293 EALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNA 352
+ + S+ AL++FPTKALAQDQ AL + YDGDT + R +R
Sbjct: 95 QRMLERPSARALFLFPTKALAQDQYAALQEAIDQLGLDLKAYTYDGDTPEAARRAIRAAG 154
Query: 353 RLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKG 412
+++ITNPDMLH ILPYH ++ + NL +VV+DE H Y+G
Sbjct: 155 QVVITNPDMLHAGILPYHTRWVNLFENL-------------------EYVVVDELHHYRG 195
Query: 413 AFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPC 472
FG H A +LRRL R+C+ YGS P + +AT NP +H L + +I G+P
Sbjct: 196 VFGSHVANVLRRLFRVCA-FYGSRPRIIACSATIGNPGDHATRLLG-RPVRVIGESGAPR 253
Query: 473 AQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFC 532
++ +++NP + + L ++ + + R A + +++G+ I F
Sbjct: 254 GERHVIVYNP-PVVNAQLGIRRSVLQEARRWAER--------------FLKNGIATIVFT 298
Query: 533 RSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNA 592
RSR E++L+Y R + E H V YR GY+ RR IER G++ GV AT+A
Sbjct: 299 RSRLSVEVLLTYLRRAMGEQG-HRVRG---YRGGYLPNQRREIERGLRSGEVLGVVATSA 354
Query: 593 LELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEK 652
LELGID+G + + G+PGS+AS WQQAGR+GRR ++AV VA PLDQY ++P
Sbjct: 355 LELGIDIGSLQAAVLAGYPGSVASFWQQAGRAGRRHGGAVAVLVASSSPLDQYIARHPRF 414
Query: 653 LFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSS 712
L P+E I N +L H+ CAA E P E++ + +T L+ +G +
Sbjct: 415 LLDRPVEAAFIHPDNLYILVSHIQCAAFELPFRA--GERFGDQPVDDVLTFLEEQGLVH- 471
Query: 713 DPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDM-QSNEVLEEIEESKAFFQVYE 771
+ + +I + P+H IS+R+ E +ID + V+ E++ A V+E
Sbjct: 472 -----RAGDRWHWIS-DTFPAHEISLRSAAEENVVIIDTSRGARVIGEVDRFSAPLLVHE 525
Query: 772 GAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQL 831
A+Y+H+G Y V+ L+ + A + + Y YTD H++ T S+
Sbjct: 526 QAIYIHEGQQYQVERLDFAENKAYVRPVQVDY------YTDAHLAVDLKVLDTFASRPAP 579
Query: 832 TKTTAQA-LACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVV 890
T A+ +A T F +L+ + + + +LP+ + A W+ + +
Sbjct: 580 GGTAARGEVAVIARATLFKKIKLFTHENVGWGRI--HLPELEMHTTACWLALEDEPAGL- 636
Query: 891 EQNFSFRSGLHAASHALLHVVPIYVRCNFSDLA--PECPNPHDSRYFPERILLYDRHPGG 948
+ ++GL +H L H+ P+Y+ C+ DL + +P R + LYD +PGG
Sbjct: 637 -DPAALQAGLQGIAHLLGHLAPLYLLCDRRDLGTVAQLRSPFTGR---PTLFLYDSYPGG 692
Query: 949 TGVSKQVTDM 958
G++ + D+
Sbjct: 693 VGLADKAYDI 702
>gi|50508656|dbj|BAD31142.1| ATP-dependent RNA helicase-like protein [Oryza sativa Japonica
Group]
gi|50509849|dbj|BAD32021.1| ATP-dependent RNA helicase-like protein [Oryza sativa Japonica
Group]
Length = 548
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 177/288 (61%), Positives = 220/288 (76%), Gaps = 19/288 (6%)
Query: 195 CSDKSQLLPLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGIS 254
C L P EMV+HL++G+G +GQ+VH+E+I R A E+P+ L + T+ ALKS G+S
Sbjct: 240 CHGTCHLGPAEMVDHLKQGLGKEGQIVHIEEIPCRAASFAELPNHLSEATREALKSIGVS 299
Query: 255 KLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQ 314
+LYSHQ+ +I +S+AG++V +AT TSSGKSLCYN+PVLE+L +L + ALY+FPTKALAQ
Sbjct: 300 RLYSHQSRAIHSSIAGRHVAIATSTSSGKSLCYNIPVLESLCQNLMACALYIFPTKALAQ 359
Query: 315 DQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFS 374
DQLR+LL M A ID+ +YDGDT ++DR W+RDNARLLITNPDMLHMSILP HGQF
Sbjct: 360 DQLRSLLEMKNALHTDIDVNIYDGDTPREDRTWIRDNARLLITNPDMLHMSILPCHGQFQ 419
Query: 375 RILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYG 434
RILSNL R++VIDEAH+YKGAFGCHTALILRRL R+CS++YG
Sbjct: 420 RILSNL-------------------RYIVIDEAHSYKGAFGCHTALILRRLKRICSNIYG 460
Query: 435 SDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNP 482
S P+F+F TATSANPREH MELA L +ELI+NDGSPC K F+LWNP
Sbjct: 461 SHPTFIFCTATSANPREHVMELAKLDNVELIENDGSPCGFKYFLLWNP 508
>gi|318060832|ref|ZP_07979555.1| ATP-dependent RNA helicase [Streptomyces sp. SA3_actG]
gi|333025383|ref|ZP_08453447.1| putative ATP-dependent RNA helicase [Streptomyces sp. Tu6071]
gi|332745235|gb|EGJ75676.1| putative ATP-dependent RNA helicase [Streptomyces sp. Tu6071]
Length = 750
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 242/716 (33%), Positives = 369/716 (51%), Gaps = 55/716 (7%)
Query: 246 SALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL------SHDL 299
+A++ GI +SHQA + +L G++VVV+T T+SGKSL Y +PVL L +
Sbjct: 3 AAVQEAGIEHPWSHQARAAEHALNGESVVVSTGTASGKSLGYLVPVLSTLLDGSEAPNGR 62
Query: 300 SSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNP 359
++ALY+ PTKALA DQ RA+ + ++ VYDGDT ++R W+R A ++TNP
Sbjct: 63 GATALYLAPTKALAADQRRAVRELAAPLGRAVRPAVYDGDTPVEEREWVRQYANYVLTNP 122
Query: 360 DMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTA 419
DMLH ILP H ++S L L+ +VVIDE H Y+G FG H A
Sbjct: 123 DMLHRGILPSHPRWSSFLRALK-------------------YVVIDECHVYRGVFGSHVA 163
Query: 420 LILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVL 479
+LRRL RLC+ YGS+P F+ ++AT+A P L L E + DGSP + +F L
Sbjct: 164 QVLRRLRRLCAR-YGSEPVFLLASATAAEPALAGQRLTGLPIAE-VAEDGSPRGEVVFAL 221
Query: 480 WNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCE 539
W P T++ + A + ++ +E + L ++ G+R +AF RSR+ E
Sbjct: 222 WEP----------PLTELQGEKGAPVRRTA-TAETADLLTDLTLQGVRSVAFVRSRRGAE 270
Query: 540 LVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDV 599
L+ +E L + L + YR GY+AE+RR +ER G+L G+AAT ALELG+DV
Sbjct: 271 LISVIAKERLADRDRSLASRVAAYRGGYLAEERRALERALHSGELLGLAATTALELGVDV 330
Query: 600 GHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIE 659
+D L G+PG+ ASLWQQAGR+GR + +LAV VA + PLD + + +PE +F P+E
Sbjct: 331 AGLDAVLIAGYPGTRASLWQQAGRAGRTGQGALAVLVARDDPLDTFLVHHPEAIFDQPVE 390
Query: 660 CCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSS 719
+D N VL HL AA E PL+ D FG + + L+ L
Sbjct: 391 STVLDPDNPYVLAPHLCAAAAELPLT-GQDRDLFGPATAELLPQLEAAKLLRRR------ 443
Query: 720 AKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQG 779
+ Y ++ + IR ++++ + +L ++ S + V+EGAV++HQG
Sbjct: 444 -GLSWYWTRKERAADLTDIRGEGGPPVQIVEEGTGRLLGTVDASASHTTVHEGAVHLHQG 502
Query: 780 HTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQAL 839
TY V+ +L + +AL ++A Y T RD T + V + + +L + +
Sbjct: 503 RTYQVRTFDLDANVALVEEASPPYTTVARDTTSVSVL--ETDRSIPWGEGRLCFGSVE-- 558
Query: 840 ACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQ-SVKAVVEQNFSFRS 898
VT + R +G + +L LP ++AVW V + + A V
Sbjct: 559 ---VTHQVVSYLRRRLLTGEVLGETKLDLPPRHLRTRAVWWTVTEDQLDAAVVHPQQLGG 615
Query: 899 GLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
LHAA HA + ++P++ C+ D+ H P + +YD HPGG G +++
Sbjct: 616 ALHAAEHASIGLLPLFATCDRWDIGGVSVPLHPDTLLPT-VFVYDGHPGGAGFAER 670
>gi|359769035|ref|ZP_09272798.1| putative ATP-dependent helicase [Gordonia polyisoprenivorans NBRC
16320]
gi|359313338|dbj|GAB25631.1| putative ATP-dependent helicase [Gordonia polyisoprenivorans NBRC
16320]
Length = 786
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 256/752 (34%), Positives = 396/752 (52%), Gaps = 62/752 (8%)
Query: 218 GQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVAT 277
G + H+ I +R A + P+ + +N + A ++ GI+K + HQA + + +G++V ++T
Sbjct: 23 GPITHLSVIPSRTATFTDWPEWVDENVREAFEADGITKPWIHQAAAAEHAHSGRHVSIST 82
Query: 278 MTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFD--ASIDIGV 335
T+SGKSL Y LP+L AL + S+ALY+ PTKAL DQ+RA+ +T A +
Sbjct: 83 GTASGKSLAYQLPILNALLTEPHSTALYLAPTKALGADQIRAVSTLTAGRGPFAHLAPCA 142
Query: 336 YDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLI 395
YDGDT R W R ++R + TNPDMLH+ IL + +LS + V +
Sbjct: 143 YDGDTDPNIRHWARTHSRWIFTNPDMLHIGIL------TGVLSGGGGSSAGPVRGQWRQF 196
Query: 396 FLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCME 455
F +R++VIDE H Y+G FG HTAL+LRRL RL GS+P+ + ++AT A+P
Sbjct: 197 FRHLRYIVIDECHHYRGVFGSHTALVLRRLLRLARAC-GSNPTVIAASATVADPAAALSR 255
Query: 456 LANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVS 515
L + + + DGSP ++ LW P V S + R +A +E S
Sbjct: 256 LIGEPAVGVTE-DGSPRGERTIALWEPDF----VPGISGENDAPVRRSAG------AESS 304
Query: 516 YLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRI 575
L A+ V G R + F RSR+ E+ R++L +AP LVD + YRAGY+A+DRR++
Sbjct: 305 RLLADFVIEGARTLCFGRSRRGVEITALGARDLLAHSAPELVDKVAAYRAGYLADDRRKL 364
Query: 576 ERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERP--SLA 633
E+ G+L GVA TNALELG+D+ +D + G+PG++AS WQQAGR+GR+ +L
Sbjct: 365 EQAISSGELVGVATTNALELGVDISGLDAVIIAGYPGTVASFWQQAGRAGRQRTSGDALV 424
Query: 634 VYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYF 693
V VA + PLD Y + +P+ L +P+E ID N +L HL+CAA E PL E++
Sbjct: 425 VLVARDDPLDTYLVHHPQALLGTPVEAPVIDPTNRYILGPHLLCAATEFPLQDAEIEQWR 484
Query: 694 GSGL-----SSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEV 748
L + G+ + G+ ++ P +D P I IR + +
Sbjct: 485 AGELVADLAAQGLLRRRKAGWYAA-PGVD--------------PHGDIDIRGGIGGQVLI 529
Query: 749 IDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTR 808
+D ++E+L ++ +A V+ GAV++HQG TY+V EL+L +AL + + T R
Sbjct: 530 VDATTSELLGTVDAGRAPATVHPGAVHIHQGRTYVVDELDLDDGLALAHPEEPDWTTSAR 589
Query: 809 DYTDIHVSGGNNAYATKISKDQLTKTTAQALACT-----VTTTWFGFYRLWRGSGIIFDT 863
+ T+I ++ D + T AL VT G+ R SG + D
Sbjct: 590 ETTEITIT------------DVIAATDHGALHTALVDVDVTHQVVGYLRTLL-SGEVLDA 636
Query: 864 VELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSG-LHAASHALLHVVPIYVRCNFSDL 922
VEL +P+ + ++AV +P V A + + G LHAA HA + ++P+ C+ D+
Sbjct: 637 VELDMPRQTLHTRAVMYTLPPEVLAAEGIDATRLPGSLHAAEHAAIGLLPLIATCDRWDI 696
Query: 923 APECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
N H P + +YD + GG G +++
Sbjct: 697 GGLSTNLHPDTGLPT-VFVYDGYLGGAGFAER 727
>gi|318079148|ref|ZP_07986480.1| ATP-dependent RNA helicase [Streptomyces sp. SA3_actF]
Length = 784
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 242/717 (33%), Positives = 369/717 (51%), Gaps = 55/717 (7%)
Query: 246 SALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL------SHDL 299
+A++ GI +SHQA + +L G++VVV+T T+SGKSL Y +PVL L +
Sbjct: 3 AAVQEAGIEHPWSHQARAAEHALNGESVVVSTGTASGKSLGYLVPVLSTLLDGSEAPNGR 62
Query: 300 SSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNP 359
++ALY+ PTKALA DQ RA+ + ++ VYDGDT ++R W+R A ++TNP
Sbjct: 63 GATALYLAPTKALAADQRRAVRELAAPLGRAVRPAVYDGDTPVEEREWVRQYANYVLTNP 122
Query: 360 DMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTA 419
DMLH ILP H ++S L L+ +VVIDE H Y+G FG H A
Sbjct: 123 DMLHRGILPSHPRWSSFLRALK-------------------YVVIDECHVYRGVFGSHVA 163
Query: 420 LILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVL 479
+LRRL RLC+ YGS+P F+ ++AT+A P L L E + DGSP + +F L
Sbjct: 164 QVLRRLRRLCAR-YGSEPVFLLASATAAEPALAGQRLTGLPIAE-VAEDGSPRGEVVFAL 221
Query: 480 WNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCE 539
W P T++ + A + ++ +E + L ++ G+R +AF RSR+ E
Sbjct: 222 WEP----------PLTELQGEKGAPVRRTA-TAETADLLTDLTLQGVRSVAFVRSRRGAE 270
Query: 540 LVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDV 599
L+ +E L + L + YR GY+AE+RR +ER G+L G+AAT ALELG+DV
Sbjct: 271 LISVIAKERLADRDRSLASRVAAYRGGYLAEERRALERALHSGELLGLAATTALELGVDV 330
Query: 600 GHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIE 659
+D L G+PG+ ASLWQQAGR+GR + +LAV VA + PLD + + +PE +F P+E
Sbjct: 331 AGLDAVLIAGYPGTRASLWQQAGRAGRTGQGALAVLVARDDPLDTFLVHHPEAIFDQPVE 390
Query: 660 CCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSS 719
+D N VL HL AA E PL+ D FG + + L+ L
Sbjct: 391 STVLDPDNPYVLAPHLCAAAAELPLT-GQDRDLFGPATAELLPQLEAAKLLRRR------ 443
Query: 720 AKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQG 779
+ Y ++ + IR ++++ + +L ++ S + V+EGAV++HQG
Sbjct: 444 -GLSWYWTRKERAADLTDIRGEGGPPVQIVEEGTGRLLGTVDASASHTTVHEGAVHLHQG 502
Query: 780 HTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQAL 839
TY V+ +L + +AL ++A Y T RD T + V + + +L + +
Sbjct: 503 RTYQVRTFDLDANVALVEEASPPYTTVARDTTSVSVL--ETDRSIPWGEGRLCFGSVE-- 558
Query: 840 ACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQ-SVKAVVEQNFSFRS 898
VT + R +G + +L LP ++AVW V + + A V
Sbjct: 559 ---VTHQVVSYLRRRLLTGEVLGETKLDLPPRHLRTRAVWWTVTEDQLDAAVVHPQQLGG 615
Query: 899 GLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
LHAA HA + ++P++ C+ D+ H P + +YD HPGG G +++
Sbjct: 616 ALHAAEHASIGLLPLFATCDRWDIGGVSVPLHPDTLLPT-VFVYDGHPGGAGFAERA 671
>gi|443625489|ref|ZP_21109929.1| putative ATP-dependent RNA helicase [Streptomyces viridochromogenes
Tue57]
gi|443340931|gb|ELS55133.1| putative ATP-dependent RNA helicase [Streptomyces viridochromogenes
Tue57]
Length = 802
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 257/759 (33%), Positives = 381/759 (50%), Gaps = 55/759 (7%)
Query: 203 PLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAE 262
P ++ L G ++ H E + R+ P + +A++ GI ++HQA
Sbjct: 3 PGTVLGRLASGPSRASRITHTEHVPPREGRHAVWPHRIRAEVIAAVRDAGIEHPWAHQAR 62
Query: 263 SIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL------SHDLSSSALYMFPTKALAQDQ 316
+ +L G +VVVAT T+SGKSL Y +PVL AL + ++ALY+ PTKALA DQ
Sbjct: 63 AAEHALDGDSVVVATGTASGKSLAYLVPVLSALLDGSEAPNGRGATALYLAPTKALAADQ 122
Query: 317 LRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRI 376
R++ ++ S+ VYDGDT ++R W+R A ++TNPDMLH ILP H ++S
Sbjct: 123 CRSVKELSHPLGNSVRPAVYDGDTPFEEREWIRQYANYVLTNPDMLHRGILPSHPRWSSF 182
Query: 377 LSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSD 436
L L+ +VVIDE H Y+G FG H A +LRRL RLC+ YG+
Sbjct: 183 LKALK-------------------YVVIDECHTYRGVFGSHVAQVLRRLRRLCAR-YGAS 222
Query: 437 PSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTD 496
P F+ ++AT+A P L L +E + +D SP + +F LW P T+
Sbjct: 223 PVFLLASATAAEPAVAARRLTGLPVVE-VADDASPRGELVFALWEP----------PLTE 271
Query: 497 MDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHL 556
+ + A + ++ +E + L ++ G+R +AF RSR+ EL+ +E L E L
Sbjct: 272 LQGEKGAPVRRTA-TAETADLLTDLAVQGIRTVAFIRSRRGAELISVIAQERLAEVDRSL 330
Query: 557 VDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIAS 616
+ YR GY+ E+RR +E+ G+L G+AAT ALELGIDV +D L G+PG+ AS
Sbjct: 331 ARRVAAYRGGYLPEERRALEQALHSGELLGLAATTALELGIDVSGLDAVLIAGYPGTRAS 390
Query: 617 LWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLV 676
LWQQAGR+GR + +LAV VA + PLD Y + +PE LF P+E +D N VL HL
Sbjct: 391 LWQQAGRAGRSGQGALAVLVARDDPLDTYLVHHPEALFDRPVESTVLDPDNPYVLAPHLC 450
Query: 677 CAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTI 736
AA E PL+ D FG + L+ L K + + E+ T
Sbjct: 451 AAAAEVPLTE-EDLALFGPEAEELLPQLEAAKLLR------RRTKAWHWTRRERAADLT- 502
Query: 737 SIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALC 796
IR +V++ + +L ++ A V+EGAV++HQG TYLV+ L+L +AL
Sbjct: 503 DIRGEGGRPVQVVEAGTGRLLGTVDAGAAHGTVHEGAVHLHQGRTYLVRSLDLEDSVALV 562
Query: 797 QKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRG 856
++A Y T RD T I V +L + + VT F R
Sbjct: 563 EEAAPPYSTVARDTTSISVL--ETDIEVPWGDGRLCYGSVE-----VTNQVVSFLRRRLI 615
Query: 857 SGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSG-LHAASHALLHVVPIYV 915
+G + +L LP + ++AVW V + N G LHAA HA + ++P++
Sbjct: 616 TGEVLGETKLDLPPRTLRTRAVWWTVTEDQLDEARINPEILGGALHAAEHASIGLLPLFA 675
Query: 916 RCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
C+ D+ H P + +YD HPGG G +++
Sbjct: 676 TCDRWDIGGVSIPLHPDTLLPT-VFVYDGHPGGAGFAER 713
>gi|334563055|ref|ZP_08516046.1| putative helicase [Corynebacterium bovis DSM 20582]
Length = 747
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 251/739 (33%), Positives = 376/739 (50%), Gaps = 68/739 (9%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
+ AR A V++P ++AL + G+ +LYSHQAE+ + AG +VVV+T T+SGKSL
Sbjct: 4 VPARPAAPVDLPAWTTPGLRAALDARGVDRLYSHQAETAELARAGHDVVVSTGTASGKSL 63
Query: 286 CYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTK-AFDASIDIGVYDGDTTQKD 344
Y LPVL AL+ + ++SALY+ PTKALAQDQ R+L+ + + A + + YDGDT +
Sbjct: 64 AYQLPVLTALTEEPTASALYIAPTKALAQDQRRSLVDLCRDAGLTDVMVATYDGDTPPEA 123
Query: 345 RMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVI 404
R +R+ +RL++TNPDMLH S+L +++R+L LR +VV+
Sbjct: 124 RRTIREESRLIVTNPDMLHASVLGNPARWTRLLRTLR-------------------YVVV 164
Query: 405 DEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLEL 464
DE H Y+G FG H +L+LRRL + G+DP+ + ++AT+A+P H L +
Sbjct: 165 DECHVYRGVFGAHVSLVLRRL----LRLTGADPTLILASATTADPAGHAARLTGRD-VTA 219
Query: 465 IQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQH 524
+ DGSP ++ LW P L V+ + + R AA S+ I A ++
Sbjct: 220 VTTDGSPQGERTVALWEP-GFLPDVVGEHGAPV---RRAATTESADI------MARLIAQ 269
Query: 525 GLRCIAFCRSRKLCELVLSYTREILEETA-PHLVDSICVYRAGYVAEDRRRIERDFFGGK 583
G R + F RSR+ ELV E L P + YRAGY EDRR +ER G
Sbjct: 270 GARTLTFVRSRRGAELVALACAETLGTLGRPGDARRVAAYRAGYTPEDRRDLERRLDDGD 329
Query: 584 LCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLD 643
L GVA TNALELGIDVG +D + GFPG++AS QQAGR+GRR + +L V V + P+D
Sbjct: 330 LLGVATTNALELGIDVGGLDAVVCAGFPGTVASFRQQAGRAGRRGQGALVVMVGSDDPMD 389
Query: 644 QYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITT 703
Y + +PE L P+E D N VL H+VCAA E PL+ D + G + T
Sbjct: 390 TYLVHHPEALLDRPVEASVFDPSNPYVLADHVVCAAAERPLA---DGEIAAWGAEGVVDT 446
Query: 704 LKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHT-ISIRAIESERYEVIDMQSNEVLEEIEE 762
L + +F SH +++R + V+D + VL ++
Sbjct: 447 L-----IRRGVLRRRPRGVFCATVEIADRSHGRVNLRGGTGDAVVVVDGTTGAVLGTVDT 501
Query: 763 SKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIH-------V 815
++A V+ GAVY+HQG +Y+V L+L IA+ +++T T+ T + V
Sbjct: 502 ARAVADVHTGAVYVHQGESYVVDTLDLDELIAVTHPDQPEWYTTTQRDTSVAVLRARRTV 561
Query: 816 SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYES 875
G + + + T G+ R G G + +TV L LP +
Sbjct: 562 PWGPGVWLADVDVQVTHRVT-------------GYQRRLPG-GEVLETVPLDLPPTDLRT 607
Query: 876 QAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRY 934
+AV V P+++ A + + LHAA HA + ++P+ C+ D+ H
Sbjct: 608 RAVAYTVEPEALFAAGVEEPLWPGALHAAEHAAIGLLPLLATCDRWDIGGLSTVLHPDTG 667
Query: 935 FPERILLYDRHPGGTGVSK 953
P + +YD + GG G ++
Sbjct: 668 LPT-VFVYDGYAGGAGFAE 685
>gi|164658387|ref|XP_001730319.1| hypothetical protein MGL_2701 [Malassezia globosa CBS 7966]
gi|159104214|gb|EDP43105.1| hypothetical protein MGL_2701 [Malassezia globosa CBS 7966]
Length = 1004
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 251/740 (33%), Positives = 385/740 (52%), Gaps = 93/740 (12%)
Query: 233 LVEIPDALLDNTKSALKST-GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPV 291
VE P L + + AL + GI +LY+HQA ++ G++VVV+T TSSGKSL Y +P+
Sbjct: 207 FVEPP--LDSDIRDALAAAHGIQQLYTHQALALTLFQHGRHVVVSTGTSSGKSLVYQIPI 264
Query: 292 LEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGV--YDGDTTQKDRMWLR 349
+ L+ S++A+ +FPTKAL QDQL +L + +++ + V YDGDT R +R
Sbjct: 265 MHVLATIPSATAMCIFPTKALTQDQLGSLRRLLHHHPSTLGVAVDAYDGDTPADYRRSIR 324
Query: 350 DNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHA 409
+ A +L TNPDMLH +ILP+ ++ R L LR+ VV+DE H
Sbjct: 325 EQAGVLFTNPDMLHQAILPHEDRWRRFLQGLRV-------------------VVLDELHV 365
Query: 410 YKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLST--LELIQN 467
Y G FG H ALILRRL RLC+ + FV +AT A+P EH L + T +ELI +
Sbjct: 366 YTGTFGTHVALILRRLRRLCAAMGNHSIQFVSCSATIASPTEHMSLLLGIDTQQIELIAD 425
Query: 468 DGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLR 527
DG+PC +K +++WNP + D S EVS LF +++
Sbjct: 426 DGAPCGKKEWIVWNPP-------------LIDVEEPGQGRVSSYKEVSQLFRHLIR---- 468
Query: 528 CIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGV 587
+ L E HL D + YR+GY DRR++E D G + G+
Sbjct: 469 ------------------EDFLHEGHTHLADRVHAYRSGYAPSDRRKLEHDMAHGHVLGL 510
Query: 588 AATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFM 647
AT+ALELGID+G +D + G P + AS+WQQAGR+GRR++ +L V + P+DQY+M
Sbjct: 511 IATSALELGIDIGVLDAVILFGMPYTSASMWQQAGRAGRRQKDALVVLLGEPFPVDQYYM 570
Query: 648 KYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNR 707
++PE +F P+ +D N +LE H+ CAA E P S D KYFG S + L R
Sbjct: 571 RHPELVFAPPLINLWVDPSNELLLEAHVQCAAYEMPWS-SEDTKYFGERALSIVQRLCVR 629
Query: 708 GYLSSDPSLDSSAKIFEYIGHEKM--PSHTISIRAIESERYEVIDMQSNEVLEEIEESKA 765
D F ++G + P+ I IR E Y +D S ++LEE+E +
Sbjct: 630 ---------DQDG--FYHLGKSDLISPATNIPIRGARQETYRYVDATSAQLLEEVEVERV 678
Query: 766 FFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATK 825
+F+ YEGAV++HQG TY+ + ++ +++ L ++ + Y T+ RD D+ +A T
Sbjct: 679 YFEAYEGAVFLHQGATYVCQSVHHDARLVLLVRSHVLYHTRPRDLVDV------DACETW 732
Query: 826 ISKDQLTKTTAQALACTVTTTW--FGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVP 883
+ L+ ++A+A V + +G++++ R + I+ D V++ + VW+ VP
Sbjct: 733 RMR-TLSHSSARACYGRVDIIFRVWGYFKVDRRANIL-DVVDIETAPLIRHTHGVWLDVP 790
Query: 884 -QSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNP-------HDSRYF 935
+ V+A+ + +HA HA+L + P++V D+ EC P R
Sbjct: 791 WKIVEALTSHEILASAAIHATEHAVLSLTPLFVASAADDVRTECKVPMRELSGRPTQRKR 850
Query: 936 PERILLYDRHPGGTGVSKQV 955
P R++ YD+ G+ QV
Sbjct: 851 PSRLIFYDKPGQNAGICTQV 870
>gi|254386198|ref|ZP_05001509.1| ATP-dependent RNA helicase [Streptomyces sp. Mg1]
gi|194345054|gb|EDX26020.1| ATP-dependent RNA helicase [Streptomyces sp. Mg1]
Length = 853
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 256/759 (33%), Positives = 390/759 (51%), Gaps = 54/759 (7%)
Query: 203 PLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAE 262
P +++ L +G ++ H E + R PD + + +A+++ GI + HQA
Sbjct: 47 PGTVLDRLSRGPSRAARITHTEHLPPRAGRHAVWPDRIRTDVVAAIRAAGIEHPWEHQAA 106
Query: 263 SIMASLAGKNVVVATMTSSGKSLCYNLPVLEALS------HDLSSSALYMFPTKALAQDQ 316
+ +L G++VVVAT T+SGKSL Y PVL AL+ + ++ALY+ PTKALA DQ
Sbjct: 107 AAEHALDGESVVVATGTASGKSLAYLAPVLSALADGAEAPNGRGATALYLAPTKALAADQ 166
Query: 317 LRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRI 376
RA+ + ++ VYDGDT ++R W+R A ++TNPDMLH ILP H +++
Sbjct: 167 RRAVRELAAPLGNAVRPAVYDGDTPFEEREWVRQYANYVLTNPDMLHRGILPAHPRWASF 226
Query: 377 LSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSD 436
L LR +VVIDE H Y+G FG H A +LRRL RLC+ YGSD
Sbjct: 227 LKALR-------------------YVVIDECHTYRGVFGSHVAQVLRRLRRLCAR-YGSD 266
Query: 437 PSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTD 496
P F+ ++AT+++P L + E + +D SP + +F LW P T+
Sbjct: 267 PVFLLASATASDPAAAASRLTGVPVTE-VADDASPRGEVVFALWEPPLL---------TE 316
Query: 497 MDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHL 556
+ + A + ++ +E + L ++V G+R +AF RSR+ EL+ +E L E L
Sbjct: 317 LRGEKGAPVRRTA-TAETADLLTDLVVQGVRTVAFVRSRRGAELIAVIAQERLAEVDRSL 375
Query: 557 VDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIAS 616
+ YR GY+ E+RR +ER G+L G+AAT ALELG+DV +D L G+PG+ AS
Sbjct: 376 PGRVAAYRGGYLPEERRALERALHSGQLLGLAATTALELGVDVSGLDAVLITGYPGTRAS 435
Query: 617 LWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLV 676
LWQQAGR+GR + +LAV VA + PLD Y + +PE LF+ P+E +D N VL HL
Sbjct: 436 LWQQAGRAGRSGQGALAVLVARDDPLDTYLVHHPEALFRQPVEATVLDPDNPYVLAPHLC 495
Query: 677 CAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTI 736
AA E PL+ D FG + L+ L A + + E+ T
Sbjct: 496 AAAAELPLTE-PDLALFGPAARELLPQLEAAKLLR------RRATAWHWTRRERACDLT- 547
Query: 737 SIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALC 796
IR ++++ + +L ++ A V++GAV++HQG TYLVK L+L +AL
Sbjct: 548 DIRGGGGRPVQIVEAATGRLLGTVDGDAAHTAVHDGAVHLHQGRTYLVKHLDLEDSVALV 607
Query: 797 QKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRG 856
++A + T RD T I V ++ + +L + + VT + R
Sbjct: 608 EEASPPFSTTARDTTAISVLETDSEI--PWGQGRLCFGSVE-----VTNQVVSYLRRKLI 660
Query: 857 SGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSG-LHAASHALLHVVPIYV 915
+G + +L LP + ++AVW V + N G LHAA HA + ++P++
Sbjct: 661 TGEVLGEAKLDLPPRTLRTRAVWWTVTEDQLDEARINPEILGGALHAAEHASIGLLPLFA 720
Query: 916 RCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
C+ D+ H P + +YD HPGG G +++
Sbjct: 721 TCDRWDIGGVSVPLHPDTLLPT-VFVYDGHPGGAGFAER 758
>gi|291446573|ref|ZP_06585963.1| ATP-dependent RNA helicase [Streptomyces roseosporus NRRL 15998]
gi|291349520|gb|EFE76424.1| ATP-dependent RNA helicase [Streptomyces roseosporus NRRL 15998]
Length = 817
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 262/766 (34%), Positives = 394/766 (51%), Gaps = 55/766 (7%)
Query: 196 SDKSQLLPLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISK 255
S S+ P +++ L G G ++ H E + R PD + SA++ GI
Sbjct: 31 SRGSRPSPAMILDRLAAGAGRAARITHTEHLPPRSGTHAFWPDRVRPEVISAIEKAGIDH 90
Query: 256 LYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL------SHDLSSSALYMFPT 309
++HQA + +L G++VV+AT T+SGKSL Y PVL L + ++ALY+ PT
Sbjct: 91 PWAHQAAAAEHALDGESVVIATGTASGKSLAYLAPVLSTLLDGSEAPNGRGATALYLAPT 150
Query: 310 KALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPY 369
KALA DQ R++ A+ ++ VYDGDT ++R W+R A ++TNPDMLH ILP
Sbjct: 151 KALAADQRRSVKALAAPLGNAVRPAVYDGDTPVEEREWVRQYANYVLTNPDMLHRGILPS 210
Query: 370 HGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLC 429
H ++S L LR FVVIDE H Y+G FG H A +LRRL RLC
Sbjct: 211 HPRWSSFLRALR-------------------FVVIDECHTYRGVFGSHVAQVLRRLRRLC 251
Query: 430 SHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSV 489
+ YG+DP F+ ++AT+A+P L L +E + +D SP + +F LW P
Sbjct: 252 AR-YGADPVFLLASATAADPAVAAGRLTGLPVVE-VSDDASPRGELVFALWEP------- 302
Query: 490 LNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREIL 549
TD+ + A + ++ +E + L ++ G+R +AF RSR+ EL+ +E L
Sbjct: 303 ---PLTDLHGEKGAPVRRTA-TAETADLLTDLTLQGVRSVAFVRSRRGAELISVIAKERL 358
Query: 550 EETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLG 609
E L + YR GY+ E+RR +ER G+L G+AAT ALELGIDV +D + G
Sbjct: 359 TEVDRSLPKRVAAYRGGYLPEERRALERALHSGELLGLAATTALELGIDVSGLDSVVICG 418
Query: 610 FPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHK 669
+PG+ ASLWQQAGR+GR + +LAV VA + PLD Y + +PE LF+ P+E +D N
Sbjct: 419 YPGTRASLWQQAGRAGRSGQGALAVLVARDDPLDTYLVHHPEALFRQPVESTVLDPDNPY 478
Query: 670 VLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHE 729
VL HL AA E PL+ D FG + + L+ L A + + E
Sbjct: 479 VLAPHLCAAAAELPLTEA-DIALFGPAVPELLPQLEAAKLLR------RRASGWHWTRRE 531
Query: 730 KMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNL 789
+ + IR ++++ + +L ++ + A V+EGAV++HQG T+LV++L+L
Sbjct: 532 RA-ADLADIRGGGGRPVQIVEEGTGRLLGTVDAAAAHTAVHEGAVHLHQGRTHLVRKLDL 590
Query: 790 SSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFG 849
+AL ++A+ Y T RD T + V + T+I Q + VT
Sbjct: 591 EDSVALVEQAEPPYSTVARDTTAVTVLETD----TEIPWGQGRLCYG---SVEVTNQVVS 643
Query: 850 FYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSG-LHAASHALL 908
F R +G + +L LP + ++AVW V + N G LHAA HA +
Sbjct: 644 FLRRKLITGEVLGETKLDLPPRTLRTRAVWWTVTEDQLDAARINPEILGGALHAAEHASI 703
Query: 909 HVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
++P++ C+ D+ H P + +YD HPGG G +++
Sbjct: 704 GLLPLFATCDRWDIGGVSVPLHPDTLLPT-VFVYDGHPGGAGFAER 748
>gi|333992574|ref|YP_004525188.1| DEAD/DEAH box helicase [Mycobacterium sp. JDM601]
gi|333488542|gb|AEF37934.1| DEAD/DEAH box helicase [Mycobacterium sp. JDM601]
Length = 782
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 255/753 (33%), Positives = 378/753 (50%), Gaps = 77/753 (10%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
HV D+ A PD D+ A GI + +SHQ + + G++VV+ T T+S
Sbjct: 24 HVADLPASPGQAGAWPDWAGDDVVGAFTGRGIERPWSHQLAAAELAHTGRHVVIGTGTAS 83
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFD------ASIDIGV 335
GKSL Y LPV+ AL+ D + ALY+ PTKAL DQLR +T A A++
Sbjct: 84 GKSLAYQLPVMAALAADPRARALYLSPTKALGHDQLRTAHTLTAAVPRLSEAAAAVAPIA 143
Query: 336 YDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLI 395
YDGD++ + R + R+ +R + +NPDM+H+S+L H +++ L LR
Sbjct: 144 YDGDSSAELRRFARERSRWVFSNPDMIHLSLLRNHARWAVFLRGLR-------------- 189
Query: 396 FLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSD---PSFVFSTATSANPREH 452
FV++DE H Y+G FG H A++LRRL RLC+ P+ +F++AT+A P
Sbjct: 190 -----FVIVDECHYYRGVFGSHVAMVLRRLLRLCARYTAPGAPGPTVIFASATTAAPGAS 244
Query: 453 CMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPIS 512
L E+ Q DGSP + LW P LR DM N A + +
Sbjct: 245 AAALIGQPVAEVTQ-DGSPHGARTVALWEP--ALRG-------DMTG-ENGAPVRRAAGT 293
Query: 513 EVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDR 572
E + + A+++ G R + F RSR+ EL R LE AP L D + YRAGY+AEDR
Sbjct: 294 EAARVMADLIAEGARTLTFVRSRRGAELTALAARTRLESVAPALADKVASYRAGYLAEDR 353
Query: 573 RRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSL 632
R +ER G+L G+A TNALELG+D+ +D + GFPG++ S WQQAGRSGRR + +L
Sbjct: 354 RGLERALADGELYGLATTNALELGVDIAGLDAVVIAGFPGTVTSFWQQAGRSGRRGQTAL 413
Query: 633 AVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSL-----I 687
V +A + PLD Y + +P L PIE ID N VL L+CAA E PL++ +
Sbjct: 414 IVLIARDDPLDSYLVHHPAALLDKPIEQVVIDPANPYVLGPQLLCAATELPLTVAEVAQL 473
Query: 688 YDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYE 747
E+ + + G+ ++ Y + P LD P H + IR +
Sbjct: 474 GAERVAENLVDDGLLRRRSEKYFPA-PGLD--------------PHHEVDIRGAAGGQVV 518
Query: 748 VIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKT 807
+++ + +L ++ +A V+ GAVY+HQG +YLV L+ +IA D Y T
Sbjct: 519 IVEADTGRLLGNVDAGRAPATVHTGAVYLHQGESYLVDSLDTERRIAFVHAEDPGYATFA 578
Query: 808 RDYTDIHVSG-GNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVEL 866
R+ TDI V+G G A+ +S + TVT G+ R +G + D VEL
Sbjct: 579 REITDIAVTGDGERAWFGPVSLGLMP--------VTVTRQIVGYLRRLP-TGEVLDFVEL 629
Query: 867 YLPKYSYESQAVWIQVPQSVKAVVEQNFS---FRSGLHAASHALLHVVPIYVRCNFSDLA 923
LP + + AV V + +A+ + + LHAA HA + ++P+ C+ D+
Sbjct: 630 ELPPATLPTTAVVYTV--TAEALADCGITEARIPGALHAAEHAAIGLLPLVASCDRGDIG 687
Query: 924 --PECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
P P + +YD +PGG G +++
Sbjct: 688 GLSMALGPGSLGALPS-VFVYDGYPGGAGFAQR 719
>gi|159039929|ref|YP_001539182.1| DEAD/DEAH box helicase [Salinispora arenicola CNS-205]
gi|157918764|gb|ABW00192.1| DEAD/DEAH box helicase domain protein [Salinispora arenicola
CNS-205]
Length = 824
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 254/736 (34%), Positives = 372/736 (50%), Gaps = 49/736 (6%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+ H+E + AR V P + + +A G+ + HQAE+ + AG +VVVAT T
Sbjct: 78 VTHIERVPARTGEPVPWPTWVPADLHTAFARQGVDTPWRHQAEAASLAYAGTHVVVATGT 137
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGD 339
+SGKSL Y LP L L D ++ LY+ PTKALA DQLRA+ + D + YDGD
Sbjct: 138 ASGKSLAYQLPALATLLADPRATVLYLAPTKALAVDQLRAVTDLD--LD-GVRPACYDGD 194
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T + +R W+R +AR ++TNPDMLH ILP H Q++ L L
Sbjct: 195 TPRAEREWIRQHARFVLTNPDMLHHGILPGHAQWTPFLRRLA------------------ 236
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
+VV+DE H Y+G FG H A +LRRL R C+ + G P FV ++ATS +P L L
Sbjct: 237 -YVVVDECHIYRGVFGSHVAHVLRRLRRRCTRI-GRTPVFVLASATSGDPAATAERLTGL 294
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
+ + D SP F LW P + TD+ R +A + E + L A
Sbjct: 295 P-VAAVTGDTSPRGGVTFALWEPPTQPTPAAAPDDTDLAPVRRSA------LRETADLLA 347
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDF 579
+ V G+R +AF RSR+ E V + R L+E P L D + YRAGY+ E+RR +ER
Sbjct: 348 DAVAAGVRTLAFVRSRRGAEAVAANARRALDEAVPGLGDQVAAYRAGYLREERRELERSL 407
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFE 639
G+L G+A+TNALELG+D+ +D L G+PG+ ASLWQQAGR+GR + +LAV VA +
Sbjct: 408 LRGELRGLASTNALELGVDLVGLDAVLICGYPGTRASLWQQAGRAGRSGQEALAVLVARD 467
Query: 640 GPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSS 699
PLD Y + +PE +F +P+E +D N VL L CAA E PL+ D FG G
Sbjct: 468 DPLDSYLVHHPEAVFGAPVEATVLDPTNPYVLGPQLACAAAEAPLTPA-DLDLFGDGAKE 526
Query: 700 GITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEE 759
+ L G L P+ Y H + P + +R + V++ + +L
Sbjct: 527 AVDALVEAGALRQRPT-------GWYWRHRERPQ--VDLRGGDGAPICVVETATGRLLGT 577
Query: 760 IEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGN 819
++ + F ++ GAVY+HQG +++V L+L+ AL + + T RD T + V
Sbjct: 578 VDGGSSHFLLHPGAVYLHQGVSHVVDALDLADGCALVHPEEPDWSTHARDVTSLSVV--- 634
Query: 820 NAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVW 879
A + + + + VT+ + R +G + DT L LP + AVW
Sbjct: 635 -AVRSYLDAGPVGLFLGE---VDVTSQVVSYQRRRIATGEVIDTRPLDLPARELRTVAVW 690
Query: 880 IQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPER 938
+ P+S+ A LHAA HA + ++P+ C+ D+ H P
Sbjct: 691 FTLSPESLAAAGIDPADVPGALHAAEHAAIGLLPLTATCDRWDIGGLSTAAHPDTGAPT- 749
Query: 939 ILLYDRHPGGTGVSKQ 954
+ +YD H GG G +++
Sbjct: 750 VFVYDGHSGGAGFAER 765
>gi|116619897|ref|YP_822053.1| DEAD/DEAH box helicase [Candidatus Solibacter usitatus Ellin6076]
gi|116223059|gb|ABJ81768.1| DEAD/DEAH box helicase domain protein [Candidatus Solibacter
usitatus Ellin6076]
Length = 786
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 243/742 (32%), Positives = 378/742 (50%), Gaps = 82/742 (11%)
Query: 228 ARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCY 287
A + E+P A+ ++AL GI +LY+HQA++ AGK+VV+ T T+SGK+LCY
Sbjct: 48 ASEGEFSEMPAAVDSRLRAALAKRGIERLYTHQADAFDQIQAGKHVVIVTPTASGKTLCY 107
Query: 288 NLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMW 347
NLPVL L D + A+Y+FPTKALA+DQL + + I YDGDT Q R
Sbjct: 108 NLPVLNLLLRDEGARAMYLFPTKALAEDQLHEFQGAVEEMGSEIRAFTYDGDTPQDARRA 167
Query: 348 LRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEA 407
+R A +++TNPDMLH ILP+H +++R NL R++VIDE
Sbjct: 168 IRSRANVVLTNPDMLHSGILPHHTRWARYFENL-------------------RYIVIDEL 208
Query: 408 HAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQN 467
H Y+G +G H A +LRRL R+C Y S P F+ +AT ANP+E L EL++
Sbjct: 209 HYYRGVYGSHLANLLRRLSRICE-FYNSKPQFICCSATIANPKELAEALTG-EPFELVER 266
Query: 468 DGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLR 527
+G+P +K F+ +NP R L ++ + +TR A K +++ L+
Sbjct: 267 NGAPRGEKFFIFYNPPVVNRQ-LGIRRSYIAETRRMALK--------------FIENNLQ 311
Query: 528 CIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGV 587
+ F +R E++++Y ++ + P +++ YR GY+ +RR IE+ GK+ V
Sbjct: 312 TLVFANNRLATEVLVTYLKDACDR-GPIPSETVRGYRGGYLPRERREIEQSLRAGKIRAV 370
Query: 588 AATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFM 647
ATNALELGID+G +D + G+PG+IAS WQ+AGR+GRR+ S AV VA PLDQY +
Sbjct: 371 VATNALELGIDIGSLDAVVMAGYPGTIASSWQRAGRAGRRQSTSAAVMVASSAPLDQYIV 430
Query: 648 KYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNR 707
++P+ F E +I+ +N ++ HL CAA E PL DEK+ L+ L+
Sbjct: 431 EHPDYFFGRSPEHAYINPENLEIFLAHLKCAAFELPLR--DDEKFGRHDLAEICRYLEEA 488
Query: 708 GYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN-EVLEEIEESKAF 766
G+L SA + + + P+ S+R++ S+ + V+D+ +V+ E+ A
Sbjct: 489 GFLH------HSAAAWHWTS-DTYPADATSLRSVTSDNFVVVDITGEAKVIAEVSFPTAL 541
Query: 767 FQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHV----SGGNNAY 822
++E A+Y+H+ + V+ + + A + D Y+T DYT + V G
Sbjct: 542 TTLHEKAIYLHEARQFHVERFDYDQRKAYVKSVDCDYYTDAIDYTQVKVLEEMEGEPQNG 601
Query: 823 ATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVE------LYLPKYSYESQ 876
A ++ D VT GF + I F T+E L +P+ +
Sbjct: 602 ARRLHGD-----------VRVTRQIVGFKK------IKFYTMENVGAGKLNMPEQEMHTT 644
Query: 877 AVWIQVPQSVKAVVEQ--NFSFRSGLHAASHALLHVVPIYVRCNFSD----LAPECPNPH 930
A W+ P + A + +SG+ +AL V + + C+ D L+ E
Sbjct: 645 AFWLHFPAAFLARFAEFTPTEKQSGISGLGNALRTVASLLLMCDPRDLGVALSEEIAGGL 704
Query: 931 DSRYFPERILLYDRHPGGTGVS 952
++ F + LYD +PGG G S
Sbjct: 705 EA--FEPNLYLYDNYPGGIGQS 724
>gi|172057774|ref|YP_001814234.1| DEAD/DEAH box helicase [Exiguobacterium sibiricum 255-15]
gi|171990295|gb|ACB61217.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sibiricum
255-15]
Length = 754
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 237/755 (31%), Positives = 381/755 (50%), Gaps = 69/755 (9%)
Query: 207 VEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMA 266
+E L+ ++ +++ + A P + + + AL++ GI+ LY HQ +
Sbjct: 11 LEELKADRSFMERVTYMKTMEATAGRYAPFPKEMPERLRQALENRGITSLYRHQELAFRT 70
Query: 267 SLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKA 326
+G + V+ T T+SGK+ C+NLP+L L + ++ ALY++PTKALAQDQ LL +
Sbjct: 71 VQSGASTVIVTPTASGKTYCFNLPILSHLLENPNARALYLYPTKALAQDQNSELLELIDE 130
Query: 327 FDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFS 386
+ASI YDGDT+ R +R ++ITNPDMLH ILP+H ++ + NL
Sbjct: 131 MEASIRCFTYDGDTSPTIRTKVRKAGNIVITNPDMLHSGILPHHTKWIELFENL------ 184
Query: 387 LVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATS 446
+VIDE H Y+G FG H A ++RRL R+C + YGSDP F+ ++AT
Sbjct: 185 -------------SHIVIDELHTYRGVFGSHVANVIRRLRRICRY-YGSDPIFIMTSATI 230
Query: 447 ANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANK 506
ANP+E L ++LI ++G+P +K F+++ P ++N + R+A +
Sbjct: 231 ANPQELAERLTE-KKVQLIDDNGAPTGRKHFIVYQP-----PIVN---AQLGIRRSATLE 281
Query: 507 TSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILE-ETAPHLVDSICVYRA 565
T L + ++ + I F RSR E++L+Y R ++ E P SI YR
Sbjct: 282 TKQ-------LASRFIKKKFQTIVFARSRVRVEVLLTYLRSLIRFELGPK---SIEGYRG 331
Query: 566 GYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSG 625
GY+ +RR IER G++ G+ +TNALELG+D+G + V + G+PG+IASLWQQAGR+G
Sbjct: 332 GYLPSERRDIERRLRKGEITGIVSTNALELGVDIGQLQVCIMNGYPGTIASLWQQAGRAG 391
Query: 626 RRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLS 685
RR+ +L + VA G LDQY + PE E +D N + H+ CAA E P
Sbjct: 392 RRQDDALIILVASSGMLDQYVAERPELFLNQSPEAARLDPDNLIIAVDHIKCAAFELP-- 449
Query: 686 LIYDEKYFGSGLSSG-ITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESE 744
F G S G + T YL + L + Y ++ P+H IS+R+ + E
Sbjct: 450 -------FRQGESFGTLETEDILEYLVEERVLHQRGDRY-YWMNDAFPAHGISLRSSDQE 501
Query: 745 RYEVIDMQS--NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLK 802
++D N V+ E++ A +++ A+Y+H Y V+ L+ K A + D+
Sbjct: 502 NVIIVDQTEVPNRVIGEMDTFSAMTLLHDEAIYLHGADQYQVEVLDFEEKKAFVRAVDVD 561
Query: 803 YFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFD 862
Y+T ++ V +++Y + + +A FG + GSG I
Sbjct: 562 YYTDANFSVELSVLDEDDSYTNGDFSVARGDVSVRGMATMFKKIKFGTHENI-GSGPI-- 618
Query: 863 TVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSD- 921
+LP+ + VW +P+ + E + +++L V P+Y+ C+ SD
Sbjct: 619 ----HLPEREIHTTGVWFSLPEEASSSTE----LEQVIEGVANSLRRVAPLYLMCDASDV 670
Query: 922 -LAPECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
+ P+ H + I LYDR+PGG G+++ +
Sbjct: 671 FVVPQVKATHTQK---PTIYLYDRYPGGVGLAESI 702
>gi|302849169|ref|XP_002956115.1| hypothetical protein VOLCADRAFT_97014 [Volvox carteri f. nagariensis]
gi|300258620|gb|EFJ42855.1| hypothetical protein VOLCADRAFT_97014 [Volvox carteri f. nagariensis]
Length = 1928
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 228/562 (40%), Positives = 306/562 (54%), Gaps = 114/562 (20%)
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYR 564
+ SPI EV+ L AE VQHGLR IAFC+SRKLCELV +YTREIL AP + + VYR
Sbjct: 1287 QQRESPIVEVALLLAECVQHGLRTIAFCKSRKLCELVTAYTREILAACAPEYTERVKVYR 1346
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
AGY +RR +E D G+L +AATNALELG+DVG +DVTLHLGFPGS+ASLWQQAGR+
Sbjct: 1347 AGYSPSERRAMEADLHSGRLLALAATNALELGVDVGGLDVTLHLGFPGSVASLWQQAGRA 1406
Query: 625 GRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
GRRER S++V VAF+GPLDQ+ +++PE+LF P+E +D VL+QHL+CAALEHPL
Sbjct: 1407 GRRERDSVSVLVAFDGPLDQHLVRHPEQLFGRPVESVQVDVNQPDVLQQHLLCAALEHPL 1466
Query: 685 SLIYDEKYFGSGLSSGITTLKNRGYLSS------------------DPSL----DSSAKI 722
L D FG + + L + LSS P L +
Sbjct: 1467 LLQQDLPLFGHNMPLAVQQLISNCLLSSRLPPPLHPHAPRRLEDHYHPDLPLQPPGCSAP 1526
Query: 723 FEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFF--------------- 767
Y G P+ +S+RAI+ ER+ + D S LEEIE S AF+
Sbjct: 1527 LVYCGPHDQPAAAVSLRAIDPERFVIWDEGSGVALEEIEASTAFYQVRSHLALCHVILHT 1586
Query: 768 --------------------------QVYEGAVYMHQGHTYLVKELNLSSKIALCQKADL 801
QVY+GAVY+ QG YL ++LNL ++AL ++AD+
Sbjct: 1587 FSNCPSARAAMAHRHLERVVRCTIIVQVYDGAVYLFQGRPYLCRQLNLGERVALVRRADV 1646
Query: 802 KYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTA------------------------- 836
KY+TK RD+TD+HV+GG AY + L
Sbjct: 1647 KYYTKIRDFTDVHVTGGRVAYPASSAAAPLQHAAGLLPLQPPAGPSAAATTSTSAAVAAA 1706
Query: 837 --------------QALACTVTTTWFGFYRLWR-GSGIIFDTVELYLPKYSYESQ----- 876
+ + V + GF+R+W+ GS +FD+V+L+LP Y++Q
Sbjct: 1707 TAATPPTPTAPTTARCESAVVAVRYLGFHRVWQGGSNRVFDSVDLFLPDVVYDTQMFIFL 1766
Query: 877 -----AVWIQVPQSV-KAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPH 930
A +++VP S + + SFR G H A+HALL+V P+++ N DLA EC NP+
Sbjct: 1767 HLLHLAAYVRVPPSARRECAARALSFREGCHGANHALLNVAPLFLTANMRDLATECDNPY 1826
Query: 931 DSRYFPERILLYDRHPGGTGVS 952
D+RY ER+LLYD+H GG G+S
Sbjct: 1827 DARYRIERLLLYDKHRGGIGLS 1848
Score = 216 bits (551), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 128/300 (42%), Positives = 174/300 (58%), Gaps = 43/300 (14%)
Query: 195 CSDKSQLLPLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGI- 253
C+ + L LE++ HL++ QGQ+VHVE I R A L L+S GI
Sbjct: 759 CTATNPLTSLELLNHLQELPWYQGQVVHVEVIPGRPAATAPPAAPLSPPVLRGLQSLGIP 818
Query: 254 -SKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKAL 312
+LY+HQA+++ A L GK SLCY +P+L+A+ D + AL MFPTKAL
Sbjct: 819 GGRLYTHQADAVDALLGGK------------SLCYLVPMLQAMCDDPDTCALLMFPTKAL 866
Query: 313 AQDQLRALLAMTKA-FDASIDIGV-----YDGDTTQKDRMWLRDNARLLITNPDMLHMSI 366
AQDQLR + + +A F GV YDGDT +R +R A++++TNPDMLH+++
Sbjct: 867 AQDQLRVIRELVEAAFGGLTGAGVPAVEVYDGDTPMSERTDIRLRAQVILTNPDMLHVTL 926
Query: 367 LPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLC 426
LP H QF+R+L+ L + VV+DE HAY G FGCHTA++LRRL
Sbjct: 927 LPSHRQFARLLAKLAV-------------------VVVDEGHAYSGVFGCHTAMVLRRLR 967
Query: 427 RLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELI----QNDGSPCAQKLFVLWNP 482
RLCS VYGSDP FV ++AT ANP + L +S ++ + +GSPCA + FVLWNP
Sbjct: 968 RLCSCVYGSDPRFVVTSATVANPLQMAARLVGVSEDDVALVGPERNGSPCALRRFVLWNP 1027
>gi|392418526|ref|YP_006455131.1| helicase/secretion neighborhood putative DEAH-box helicase
[Mycobacterium chubuense NBB4]
gi|390618302|gb|AFM19452.1| helicase/secretion neighborhood putative DEAH-box helicase
[Mycobacterium chubuense NBB4]
Length = 788
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 255/753 (33%), Positives = 380/753 (50%), Gaps = 80/753 (10%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLA--GKNVVVATMT 279
HV D+ R+A P + A G+ +SHQ + A LA G++VVV+T T
Sbjct: 29 HVADLPPRRAKTQPWPHWTAPDVVRAFHDRGVEAPWSHQL--VAADLAHNGRHVVVSTGT 86
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIG--VYD 337
+SGKSL Y LP+L AL+++ + ALY+ PTKAL DQLRA A+T + +D+ YD
Sbjct: 87 ASGKSLAYQLPILTALTNNPRARALYLSPTKALGHDQLRAAAALTSSIPGLMDVAPTAYD 146
Query: 338 GDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFL 397
GD+ + R R+ +R + +NPDM+H+S+L H +++ L +LR
Sbjct: 147 GDSPAEVRRLARERSRWIFSNPDMIHLSLLRNHARWAVFLRHLR---------------- 190
Query: 398 FIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVY------GSDPSFVFSTATSANPRE 451
+VV+DE H Y+G FG + A++LRRL RLC+ + P+ +F++AT++ P
Sbjct: 191 ---YVVVDECHYYRGIFGSNVAMVLRRLLRLCARYSPAGAESAAGPTVIFASATTSEPAI 247
Query: 452 HCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDD--TRNAANKTSS 509
EL S +E+ + DGSP + LW P +DD N A S
Sbjct: 248 TASELIGQSVVEVTE-DGSPQGARTVALWEPAL------------IDDLVGENGAPVRRS 294
Query: 510 PISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVA 569
SE + + A++V G R + F RSR+ EL R L +TAP L + + YRAGY+A
Sbjct: 295 AGSEAARVMADLVAEGARTLTFVRSRRGAELAALSARARLADTAPALAEQVASYRAGYLA 354
Query: 570 EDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRER 629
E+RR +ER G+L G+A TNALELG+D+ +D + GFPG++AS WQQAGR+GRR +
Sbjct: 355 EERRALERALAEGELRGMATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRAGRRGQ 414
Query: 630 PSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLS---- 685
+L V +A + PLD Y + +P L PIE ID N VL L+CAA E PL+
Sbjct: 415 GALVVLIARDDPLDTYLVHHPAALLDKPIERVVIDPANPYVLGPQLLCAATELPLTDAEV 474
Query: 686 LIYDEKYFGSGL-SSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESE 744
++D + L G+ + GY + P +D P + IR
Sbjct: 475 RMWDAEAVADALVDDGLLRRRPSGYFPT-PGVD--------------PHPAVDIRGSTGG 519
Query: 745 RYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYF 804
+ +++ + +L +A QV+ GAVY+HQG +Y+V L+ IA D Y
Sbjct: 520 QIAILEAGTGRMLGSSGSGQAPAQVHPGAVYLHQGESYVVDSLDFEDGIAFVHAEDPGYT 579
Query: 805 TKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTV 864
T R+ TDI V+G + T + +V+ T G+ R R G I D V
Sbjct: 580 TFAREVTDITVTGPGR-------RHDHGPVTVGLVPVSVSNTVIGYLRR-RLDGEIIDFV 631
Query: 865 ELYLPKYSYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLA 923
EL +P + E+ AV + P+++ LHAA HA + ++P+ C+ D+
Sbjct: 632 ELEMPTRTLETMAVKCTITPEALLRNGIDPLRIPGSLHAAEHAAIGLLPLIASCDRGDIG 691
Query: 924 --PECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
P D P I +YD +PGG G + +
Sbjct: 692 GVSTAVGPVDG--LPT-IFVYDGYPGGAGFAAR 721
>gi|340623973|ref|YP_004742426.1| helicase family protein [Methanococcus maripaludis X1]
gi|339904241|gb|AEK19683.1| helicase family protein [Methanococcus maripaludis X1]
Length = 759
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 233/738 (31%), Positives = 388/738 (52%), Gaps = 64/738 (8%)
Query: 223 VEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSG 282
+++I + A E L DN K L I KLY+HQ ++ KN+++ T T+SG
Sbjct: 29 IKEIPPKNAEYTENNLDLPDNFKEYLLKKDI-KLYTHQYSALENVRNRKNILLTTSTASG 87
Query: 283 KSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQ 342
K+L +NLP+LE L +D ++ALY++PTKAL DQL L + + ++ +YDGDT
Sbjct: 88 KTLSFNLPILETLQNDKDATALYIYPTKALTNDQLNNLKNLENELNITLKPEIYDGDTPN 147
Query: 343 KDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFV 402
R +R+ +R+++TNP LH +L Y+ ++ NL+ ++
Sbjct: 148 SKRKSIREKSRIILTNPHELH-QVLQYNPKWISFFKNLK-------------------YI 187
Query: 403 VIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTL 462
VIDEAH Y+G FG + + ++RRL R+C YGSDP F+ ++AT AN +E +L L
Sbjct: 188 VIDEAHTYRGIFGSNISFLIRRLRRICGD-YGSDPQFILASATLANAKEFSEKLVGLD-F 245
Query: 463 ELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMV 522
+I DGSP +K FV +N L++ +++S S S + +
Sbjct: 246 TVIDKDGSPKNKKYFVFYN---TLKNEISES---------------SWYSAAINILELCM 287
Query: 523 QHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGG 582
++GL+ I F SRK+ EL+ +T++ L L I YR+G+ E+RR IE G
Sbjct: 288 KYGLQTIGFTLSRKMAELITIWTKKSLGNNI--LSRKISSYRSGFTPEERRDIESRLKNG 345
Query: 583 KLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPL 642
L + +TNALE+GID+G +D + G+PG++ SLWQQAGR+GR S+ ++ E PL
Sbjct: 346 DLRALTSTNALEVGIDIGSLDSVIMYGYPGTLMSLWQQAGRAGRAGYDSVVTLLSRESPL 405
Query: 643 DQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGIT 702
DQY + +PE +F E ID +N +++ L+CAA E P++L D+ YFG + +
Sbjct: 406 DQYIISHPETVFGKTTENAVIDLENPQIIVGQLLCAAAELPITL-NDKPYFGENIEEYLN 464
Query: 703 TLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEE 762
L N G L+ + + + Y+ + S +S+ +I S ++V+D + N ++E ++E
Sbjct: 465 QLSNCGL------LEKTDRGWVYVNTVR-ASELVSLDSIFSSEFKVVDEKGN-LIEILDE 516
Query: 763 SKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAY 822
A+ + + GAV +H Y++KE++L SK+ K D++Y+TK R T++ +
Sbjct: 517 MHAYPEAHVGAVLLHNSENYIIKEMDLESKVCTTVKKDVEYYTKARGSTNVEI------- 569
Query: 823 ATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQV 882
++ + + V+ T+ + + G + + L LP ++++ A+W
Sbjct: 570 INELDRKDFGSFSIHFGEVIVSKTYIMYDVMKFGKRMSQEL--LNLPPITFQTTALWYTF 627
Query: 883 PQSVKAVVE--QNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERIL 940
E + F GLH HA++++ PI++ C+ D+ N H P I
Sbjct: 628 EDEFFNDFENLKEKDFGDGLHGTEHAMINIFPIHIMCDSHDIGGLSTNMHYGTRKPS-IF 686
Query: 941 LYDRHPGGTGVSKQVTDM 958
+YD GG G+SK+ +M
Sbjct: 687 IYDGFEGGIGLSKKAYEM 704
>gi|256833431|ref|YP_003162158.1| DEAD/DEAH box helicase [Jonesia denitrificans DSM 20603]
gi|256686962|gb|ACV09855.1| DEAD/DEAH box helicase domain protein [Jonesia denitrificans DSM
20603]
Length = 861
Score = 381 bits (978), Expect = e-102, Method: Compositional matrix adjust.
Identities = 260/815 (31%), Positives = 395/815 (48%), Gaps = 88/815 (10%)
Query: 194 RCSDKSQLLPL-EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTG 252
R +D ++ L E+V+ L G +M HVE +AR A P + + AL G
Sbjct: 12 RTTDNGEMPRLDELVDALTAGGRRTDRMCHVEHRAARPAQHSAWPQWVHPAVRQALTVRG 71
Query: 253 ISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL----------SHDLSSS 302
S ++HQA + A G +V +AT T SGKSL + +P L ++ H ++
Sbjct: 72 ASSAWTHQATAAQAIHDGHHVALATSTGSGKSLAFWVPALTSIMSTRSGGSISRHRDRAT 131
Query: 303 ALYMFPTKALAQDQLRALLAMTKAFD-ASIDIGVYDGDTTQKDRMWLRDNARLLITNPDM 361
ALY+ PTKALA DQL AL + A S+ + DGDT+ +R W++ + +++TNPD
Sbjct: 132 ALYLAPTKALAHDQLAALQKLLSAGGLDSVRVDAVDGDTSFDERRWVQAHGDIILTNPDF 191
Query: 362 LHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALI 421
LH ++LP H ++SR L L F++IDE H Y+G FG H +LI
Sbjct: 192 LHYALLPGHERWSRFLRGLE-------------------FLIIDEGHTYRGVFGAHVSLI 232
Query: 422 LRRLCRLCSHVYGSD-PSFVFSTATSANPREHCMELANLSTLELI--QNDGSPCAQKLFV 478
+RRL RL +H G P V ++ATSA+P++ L +S E++ DGSP ++ V
Sbjct: 233 VRRLQRLVAHYRGGRMPVVVVASATSAHPQQSAARLIGVSEDEVVAVTEDGSPSGRQTIV 292
Query: 479 LWNPTSCLRSVLNKSQTDM-----------------DDTRNAANK-----TSSPI----- 511
LW P S ++ +D+ DD A+ T +P+
Sbjct: 293 LWQPPQ-RESGFTQAPSDVVPGVVDELTGGWDHSVDDDLTGGADDLSGVITDAPVPSQPR 351
Query: 512 ----SEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGY 567
+E L A++ HG R +AF RSR+ E + +TR+ L + P L DS+ YR G+
Sbjct: 352 RPATAEAVDLLADLTAHGARTLAFTRSRRAAEYLAVHTRDELLMSVPQLADSVAAYRGGF 411
Query: 568 VAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRR 627
+ E+RR +E G + +A+TNALE+GID+ +DV L +G+PG+ SLWQQAGR+GR
Sbjct: 412 LPEERRALEAGVRSGSIRALASTNALEMGIDISGLDVVLIVGWPGTRMSLWQQAGRAGRA 471
Query: 628 ERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLI 687
L V++A E PLD Y + +PE +F +P+E D N VL HL AA E P++
Sbjct: 472 GSDGLVVFIAREDPLDTYVVSHPEAIFGAPLEATVFDPTNPYVLGGHLCAAAAELPVTEA 531
Query: 688 YDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYE 747
+ G + L +RG L P Y H++ + SIR +
Sbjct: 532 DLTLFGGCRAREVLDQLVDRGTLRRRPR-------GWYWVHDEPAAQFTSIRGDGQHVVQ 584
Query: 748 VIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKT 807
V++ + +L ++ A QV++GAVY H G T++V ++ + +AL + + Y T +
Sbjct: 585 VVERSTGRLLGTVDAGAADGQVHDGAVYTHGGSTFVVAHYDVDNHVALVDQEVVAYSTWS 644
Query: 808 RDYTDIHV--SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVE 865
RD T I + + +++ D V GF R SG +
Sbjct: 645 RDVTSIEIVSTASERVVPAEVAGDPALVEWGFG-QVNVHGQVTGFTRRRVPSGEVLGHES 703
Query: 866 LYLPKYSYESQAVWIQVPQSV----KAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSD 921
L LP + + AVW V +V VE+ LHAA HA + ++P+ V C+ D
Sbjct: 704 LDLPVRTLPTAAVWWSVSTAVLERAGLAVEE---VPGALHAAEHAAIGLLPLLVTCDRWD 760
Query: 922 LAPECPNPHDSRYFPER--ILLYDRHPGGTGVSKQ 954
L H ER + +YD PGG G ++Q
Sbjct: 761 LGGVSTAIHPDT---ERATVFVYDALPGGAGFAEQ 792
>gi|377558872|ref|ZP_09788444.1| putative ATP-dependent helicase [Gordonia otitidis NBRC 100426]
gi|377523956|dbj|GAB33609.1| putative ATP-dependent helicase [Gordonia otitidis NBRC 100426]
Length = 807
Score = 381 bits (978), Expect = e-102, Method: Compositional matrix adjust.
Identities = 249/752 (33%), Positives = 383/752 (50%), Gaps = 67/752 (8%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+ H+ I +R P+ L D +SAL +GI++ + HQ + G++V +AT T
Sbjct: 41 VTHLSVIDSRPPTFAPWPEWLSDEVRSALIDSGITQPWIHQTVAADHVFKGRHVSIATGT 100
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIG--VYD 337
+SGKSL Y +P+L L + S+ALY+ PTKAL DQL+AL ++ + + YD
Sbjct: 101 ASGKSLSYQMPILTTLLAEPQSTALYLSPTKALGADQLKALTSIISGRRDFVHLQPCAYD 160
Query: 338 GDTTQKDRMWLRDNARLLITNPDMLHMSIL------------PYHGQFSRILSNLRLIAF 385
GDT + R W R ++R + TNPDMLH+ IL P GQ+ +
Sbjct: 161 GDTETEIRQWARAHSRWIFTNPDMLHLGILTGVATPGTHTGGPSRGQWRQF--------- 211
Query: 386 SLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTAT 445
F +R+VV+DE H Y+G FG +TA++LRRL RL GS+P+ + ++AT
Sbjct: 212 ----------FAHLRYVVVDECHHYRGVFGSNTAMVLRRLLRLARAC-GSEPTVIAASAT 260
Query: 446 SANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAAN 505
A+P L + + +DGSP ++ LW P L V + N A
Sbjct: 261 VADPAAALERLIGEPAVG-VTHDGSPRGERTVALWEP-DFLPGVTGE---------NNAP 309
Query: 506 KTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRA 565
S +E + L A+ V G R ++F RSR+ E+ R +L +AP LV+ + YRA
Sbjct: 310 VRRSAGAESARLLADFVIEGARTLSFGRSRRGVEITALGARNLLAHSAPELVEKVAAYRA 369
Query: 566 GYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSG 625
GY+A+DRRR+E G L GVA TNALELG+D+ +D + G+PG+IAS WQQAGR+G
Sbjct: 370 GYLADDRRRLETAISDGSLVGVATTNALELGVDITGLDAVIIAGYPGTIASFWQQAGRAG 429
Query: 626 RRERP--SLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHP 683
R+ +L V VA + PLD Y + +P L +P+E ID N +L HL+CAA E+P
Sbjct: 430 RQRESGDALVVLVARDDPLDTYLVHHPHALLDTPVEAPVIDPTNPYILAPHLLCAATEYP 489
Query: 684 LSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIES 743
L E++ G S + L G L A + G E P I IR
Sbjct: 490 LGDNEIERW---GASEAVAELAADGLLRK-----RKAGWYPAAGVE--PHGDIDIRGGIG 539
Query: 744 ERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKY 803
+ ++D S+E+L ++ +A V+ GAV++HQG +Y+V EL+L +AL + +
Sbjct: 540 GQVLIVDQSSSELLGTVDAGRAPATVHPGAVHIHQGESYVVDELDLEEGLALAHPEEPDW 599
Query: 804 FTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDT 863
T R+ T++ V+ + I + +A V+ G+ R SG + D
Sbjct: 600 TTSARETTEVSVT-------SVIESRSYGPLSVAFVAVDVSHQVVGYLRKLP-SGEVLDA 651
Query: 864 VELYLPKYSYESQAV-WIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDL 922
VEL +P+ + ++AV + P+++ + LHAA HA + ++P+ C+ D+
Sbjct: 652 VELDMPRQTLHTRAVMYTLTPETLADIGIDATRLPGALHAAEHAAIGLLPLVATCDRWDI 711
Query: 923 APECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
N H P + +YD + GG G +++
Sbjct: 712 GGLSTNLHPDTGLPT-VFVYDGYLGGAGFAER 742
>gi|444306856|ref|ZP_21142611.1| Helicase superfamily 1 and 2 ATP-binding protein [Arthrobacter sp.
SJCon]
gi|443480842|gb|ELT43782.1| Helicase superfamily 1 and 2 ATP-binding protein [Arthrobacter sp.
SJCon]
Length = 825
Score = 381 bits (978), Expect = e-102, Method: Compositional matrix adjust.
Identities = 245/760 (32%), Positives = 378/760 (49%), Gaps = 74/760 (9%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATM 278
Q+ HV + AR AV P + + A S GI + Y HQ E+ + G +VVVAT
Sbjct: 19 QLRHVRTLPARAAVHAPWPAWVHPDLVDAYASLGIGEPYRHQVEAADIAHDGGHVVVATG 78
Query: 279 TSSGKSLCYNLPVLEALS-------------HDLSSSALYMFPTKALAQDQLRALLAMTK 325
T+SGKSL Y LP L+A+ HD + LY+ PTKALA DQL A+ A+
Sbjct: 79 TASGKSLAYQLPALDAIHRSELRVLADPGKIHDDGAVTLYLSPTKALAADQLNAIRALKL 138
Query: 326 AFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAF 385
++ YDGDT R W+RD+A ++ NPDMLH ILP H ++
Sbjct: 139 P---TVRAETYDGDTDPASRRWIRDHANFILANPDMLHFGILPNHAWWAGF--------- 186
Query: 386 SLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGS-----DPSFV 440
F +R+V++DEAH+Y+G FG H A ++RRL R+C++ YG+ +P F+
Sbjct: 187 ----------FRRLRYVIVDEAHSYRGVFGSHVANLMRRLRRICAY-YGAGTSFPEPVFI 235
Query: 441 FSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDT 500
++AT+++P L + ++ + +D SP W P + D
Sbjct: 236 AASATASDPDASFSRLIG-APVQAVSSDCSPHGATTVAFWEPA-------------LSDV 281
Query: 501 R--NAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVD 558
R N A + + ++E + L A +V +R IAF +SR+ E + + T+ +L+E P L
Sbjct: 282 RGENGAKERRTAVAETADLLANLVSAQVRTIAFIKSRRGAESISTITKRLLDEVDPSLPQ 341
Query: 559 SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLW 618
+ YR+GY+ E+RR +ER G+L GV++T+ALELGID+ +D L G+PG+ ASL+
Sbjct: 342 RVAAYRSGYLPEERRAVERALRSGQLLGVSSTSALELGIDISGLDAVLVAGWPGTRASLF 401
Query: 619 QQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCA 678
QQ GR+GR + ++A +VA + PLD + + +PE +F +E D N VL HL A
Sbjct: 402 QQIGRAGRAGQEAIAAFVASDDPLDTFLVNHPEAIFDVSVEATVFDPSNPYVLGPHLCAA 461
Query: 679 ALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISI 738
A E PL + FG + + L +GYL P+ + H + + +++
Sbjct: 462 AAELPLG-PGELDLFGGTAEALLDKLVAQGYLRRRPA-------GWFWTHAQSAAAMVNL 513
Query: 739 RAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQK 798
RA ++D + +L ++ + +Q + GAVY+HQG +Y+V++LN + ++
Sbjct: 514 RADGGGPVSIVDADTGSLLGTMDSPQTHYQAHNGAVYIHQGDSYVVEDLNEEDHCVVVRR 573
Query: 799 ADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSG 858
A+ Y+T RD T I V T+ + Q T VTT F R S
Sbjct: 574 ANPDYYTTARDVTQIEV------LETQRTM-QWGDITVHFGDVKVTTQVVSFQRKALISN 626
Query: 859 IIFDTVELYLPKYSYESQAVWIQVP-QSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRC 917
I L L ++AVW V +S+ A F LHAA HA + ++P+
Sbjct: 627 EILGEEPLDLGARDLFTKAVWFVVDNRSLTAAGLIEAQFPGALHAAEHAAIGLLPLVASS 686
Query: 918 NFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTD 957
+ D+ H P I +YD HPGG G +++ D
Sbjct: 687 DRWDIGGVSTALHADTGVPT-IFVYDGHPGGAGFAERGFD 725
>gi|111225907|ref|YP_716701.1| ATP-dependent RNA helicase [Frankia alni ACN14a]
gi|111153439|emb|CAJ65196.1| putative ATP-dependent RNA helicase [Frankia alni ACN14a]
Length = 829
Score = 380 bits (977), Expect = e-102, Method: Compositional matrix adjust.
Identities = 250/761 (32%), Positives = 378/761 (49%), Gaps = 68/761 (8%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
M HVE ++AR P+ + + + GI ++HQA + A+ AG++VV+AT T
Sbjct: 53 MTHVEPVAARPGRRAPWPEWVDPVLRGRWVAAGIDAPWTHQAAAADAAHAGRSVVLATGT 112
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGD 339
+SGKSL Y +PVL L + ALY+ PTKALA DQLRA+ A+ + YDGD
Sbjct: 113 ASGKSLGYLMPVLSRLLAQPGARALYLSPTKALAHDQLRAVRALRL---TGVRAATYDGD 169
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T +R W+R +A L++TNPDMLH ILP H ++++ L L
Sbjct: 170 TPAAERDWVRAHAGLVLTNPDMLHRGILPQHRRWAQFLRGL------------------- 210
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
RFVVIDE H Y+G FG H A ++RRL R+C+ YGS P F+ ++AT+A+P L +
Sbjct: 211 RFVVIDECHGYRGVFGAHVAAVIRRLRRVCAR-YGSQPVFLLASATTADPGLSAGRLTGV 269
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDD-------------------- 499
+E+I +DG+P FVL+ P R + +D
Sbjct: 270 D-VEVIDDDGAPRGPMDFVLYEPPLLWRRPAEREGSDASGEPRGAGGNGAGENGAGENGV 328
Query: 500 -----TRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAP 554
N A S +E + L A++V G+R + F RSR+ E+V R L
Sbjct: 329 GEYGVGENGAPVRRSVTAESADLLADLVADGVRTLVFVRSRRSAEVVAVTARRELGHIGA 388
Query: 555 HLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSI 614
L + + YRAGY+ E+RR +ER G L GVA T+ALELG+D+ +D T+ GFPG++
Sbjct: 389 DLAERVAAYRAGYLPEERRELERRLRAGDLLGVATTSALELGVDISGLDATVTAGFPGTL 448
Query: 615 ASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQH 674
ASLWQQAGR+GR + SLAV VA + PLD Y + +PE +F +E C D N VL
Sbjct: 449 ASLWQQAGRAGRDGQRSLAVLVARDDPLDTYLVHHPEAVFGRSVEACVFDPDNPYVLAPQ 508
Query: 675 LVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSH 734
L CAA E PL+ D FG + + L RG L P + + G +
Sbjct: 509 LECAAAELPLTEA-DLGLFGPAAARVVDDLVRRGRLRRRP----TGWFWTQRGRPE---- 559
Query: 735 TISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIA 794
+ IR +++ + +L ++ + A V+ GAVY+HQG +++V +L+L +A
Sbjct: 560 -VDIRGAGGPPVRIVETATGRLLGTVDAAAAHSAVHPGAVYLHQGSSFVVDDLDLPEAVA 618
Query: 795 LCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLW 854
+ ++ T R++TDI + L VT+ G+ R
Sbjct: 619 FVHEESPEWTTVAREHTDIRI-------VESTRSRVLPDVEVHLGVVEVTSQVVGYQRRL 671
Query: 855 RGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVE-QNFSFRSGLHAASHALLHVVPI 913
+G + L LP ++AVW V ++ A + ++ +HAA HA + ++P+
Sbjct: 672 VATGEVLGQEPLDLPPRQLRTRAVWYTVTDALLAGADVESADVPGAVHAAEHAAIGLLPL 731
Query: 914 YVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
+ C+ D+ H + + +YD H GG G +++
Sbjct: 732 FATCDRWDIGGVSTALH-ADTGRTSVFVYDGHAGGAGFAER 771
>gi|298675065|ref|YP_003726815.1| DEAD/DEAH box helicase [Methanohalobium evestigatum Z-7303]
gi|298288053|gb|ADI74019.1| DEAD/DEAH box helicase domain protein [Methanohalobium evestigatum
Z-7303]
Length = 906
Score = 380 bits (977), Expect = e-102, Method: Compositional matrix adjust.
Identities = 236/755 (31%), Positives = 380/755 (50%), Gaps = 58/755 (7%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
+ + +R G Q Q+VH+EDI A+ I L N L GI+ LY HQ E+I
Sbjct: 5 QQINKIRSSRGYQNQIVHIEDIPAKNPEYKTIELKPLINY--GLDKAGINNLYKHQVEAI 62
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
GKN+V++T T+SGK+L Y +PV E L+ + ++ +Y+ P AL DQ++
Sbjct: 63 ENIRNGKNIVLSTGTASGKTLSYLIPVFEHLTDNNDATVIYVSPLNALVNDQVKKFQNFR 122
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
IDI + G +++ ++N+R++ TNP+MLHMS+L + Q+ R+LSNL+
Sbjct: 123 DETGLDIDINRFIGSIPDEEKKSAKNNSRIIFTNPEMLHMSLLQWKHQWFRVLSNLK--- 179
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
++++DE+H Y+G G + A +LRRL R+C++ YGS+P ++ TA
Sbjct: 180 ----------------YIILDESHYYRGVLGSNMANLLRRLERVCNY-YGSNPQYICCTA 222
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T NP EH L + +I +DGS + FV WNP + +
Sbjct: 223 TIGNPEEHAHCLTG-KDVTVIDSDGSSNGPQKFVFWNPPLFI-------------NKKGF 268
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCE-LVLSYTREILEETAPHLVDSICVY 563
N + E LF+ VQ G + I F RSR+ E + LS +E+ + + +C Y
Sbjct: 269 NVRKASFYESVRLFSTFVQDGYQSIIFTRSRQKAERMALSAKKELETRDSS---EKVCSY 325
Query: 564 RAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGR 623
R GY +DR IE+ G L GV +TNALELGID+G +DV + G+PG++ + QQAGR
Sbjct: 326 RGGYHKDDRENIEKQLSEGTLRGVISTNALELGIDIGGLDVCVLDGYPGTVMNTKQQAGR 385
Query: 624 SGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHP 683
+GR + S VA LDQY+M+ P+K F+ IE I+ N + E H++CAA E P
Sbjct: 386 AGRGDNESAVFMVAGPDALDQYYMRNPDKFFRKNIEKAVINVSNPYIQEGHILCAAKEIP 445
Query: 684 LSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIES 743
L DE YFG S + +L N+ ++ S P +SIR I
Sbjct: 446 LRE-KDEMYFGPKFHSIVQSLDNQKMVTEKEPKSSLI---------PQPHMDVSIRNISK 495
Query: 744 ERYEVIDMQSNE---VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKAD 800
Y ++ + N+ + +++E S+AF + +EG++Y+ QG Y+V E+N Q+
Sbjct: 496 HGYTIVLVSGNKRKTLEKDMESSQAFREGFEGSIYLSQGIPYIVTEMNHEKGEIYVQETR 555
Query: 801 LKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGII 860
Y+TK ++I V + S D T + V G+ + + S
Sbjct: 556 ADYYTKPLIDSEISVKEIYENSSLNTSND----ITIGYGSVEVEEQVTGYKKFQQFSEEE 611
Query: 861 FDTVELYLPKYSYESQAVWIQVPQSVKAVVEQ-NFSFRSGLHAASHALLHVVPIYVRCNF 919
L +P+ + E++++W+++P+ K +V + F G+HA H ++ + PI++ +
Sbjct: 612 LGEYSLDMPRTTLETESLWMELPERFKELVNNCDLDFDGGIHAVEHGMIAMYPIHLLADR 671
Query: 920 SDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
+D+ + H I +YD H GG G ++
Sbjct: 672 NDVGGLSKSNHSDIGDKSGIFIYDGHNGGVGYAEN 706
>gi|258510446|ref|YP_003183880.1| DEAD/DEAH box helicase [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|257477172|gb|ACV57491.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 759
Score = 380 bits (977), Expect = e-102, Method: Compositional matrix adjust.
Identities = 245/735 (33%), Positives = 376/735 (51%), Gaps = 65/735 (8%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
+ AR + P L ++L + GI +LY+HQ E+ AG++VV+AT T+SGK+L
Sbjct: 28 MPARIGRYADFPAELHPELCASLAARGIERLYAHQREAWDLIQAGRDVVIATPTASGKTL 87
Query: 286 CYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDR 345
CYNLPVL+A+ D S ALY+FPTKALAQDQ+ L + + S+ YDGDT R
Sbjct: 88 CYNLPVLQAILRDPSVRALYVFPTKALAQDQVAELHDLVQNLKTSVHTFTYDGDTPVHAR 147
Query: 346 MWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVID 405
+R+ +++TNPDMLH +ILP+H ++ R+ NL R+VVID
Sbjct: 148 QKIREAGHIVVTNPDMLHAAILPHHTKWLRLFKNL-------------------RYVVID 188
Query: 406 EAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELI 465
EAH Y+G FG H A ++RRL R+ + YG+ P F+F +AT ANP E L T ++
Sbjct: 189 EAHIYRGVFGSHVANVIRRLLRIAA-FYGARPQFIFCSATIANPGELTSRLLGRET-AVV 246
Query: 466 QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHG 525
G+P +K +L+NP V++ S AA + L A ++QH
Sbjct: 247 SESGAPEGEKHVILYNP-----PVVDPSLGLRQSALRAARR----------LGARLLQHE 291
Query: 526 LRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLC 585
+ I F R+R EL+ SY R + + I YR GY+ +RR IER G++
Sbjct: 292 IPTILFARTRNQVELLASYLR---RDARDRVRSRIVSYRGGYLPNERRAIERGLREGQIV 348
Query: 586 GVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQY 645
GV +TNALELG+D+G + + +G+PGS+AS QQ GR+GRR+ S A++VA LDQ+
Sbjct: 349 GVVSTNALELGVDIGSLQAAITVGYPGSVASTRQQMGRAGRRKGISAAIFVATSSALDQW 408
Query: 646 FMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGI-TTL 704
+++PE L + E I N +L HL CAA E P S DE++ G+ TT
Sbjct: 409 MVRHPEALLDASPEAARIYPDNLLILMDHLKCAAYELPFSA--DERF-------GVETTD 459
Query: 705 KNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNE--VLEEIEE 762
+ YL L +A + + MP+H +S+R+ E ++D ++ V+ E++
Sbjct: 460 ELLDYLVDMRVLHRAADGRYFYMADDMPAHAVSLRSAAQENVVIVDQSAHPPVVIGEMDR 519
Query: 763 SKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAY 822
A ++E A+Y+HQ + V+ L+L + A + D Y+T + V N
Sbjct: 520 FSALTMLHEEAIYLHQSQMFQVETLDLENGKAFVRPVDCDYYTDAELAVHLQVLEENQ-- 577
Query: 823 ATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQV 882
L T LA T T F +L + + ++YLP+ + W+
Sbjct: 578 --HTEDGPLCHYTGD-LAVHATPTLFKKIKLETHENVGWG--KIYLPEAELHTSGYWVTF 632
Query: 883 PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSD--LAPECPNPHDSRYFPERIL 940
++ + + + + L H L H V ++ C SD +A E +PH R +
Sbjct: 633 DRAGWSASDDEWE--AALKGLGHVLKHAVALHAMCASSDVHVAVEVRDPHYGR---PSVY 687
Query: 941 LYDRHPGGTGVSKQV 955
+YD +PGG G++++V
Sbjct: 688 VYDAYPGGVGIAERV 702
>gi|441507846|ref|ZP_20989771.1| putative ATP-dependent helicase [Gordonia aichiensis NBRC 108223]
gi|441447773|dbj|GAC47732.1| putative ATP-dependent helicase [Gordonia aichiensis NBRC 108223]
Length = 791
Score = 380 bits (976), Expect = e-102, Method: Compositional matrix adjust.
Identities = 250/743 (33%), Positives = 383/743 (51%), Gaps = 49/743 (6%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+ H+ I +R A PD + D K+AL +GI + + HQ + + AG++V +AT T
Sbjct: 25 VTHLSVIGSRSATFAPWPDWVSDEVKNALVDSGIGQPWIHQTAAADHAFAGRHVSIATGT 84
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFD--ASIDIGVYD 337
+SGKSL Y +P+L L + S+ALY+ PTKAL DQL+AL ++ + + YD
Sbjct: 85 ASGKSLSYQMPILTTLLAEPHSTALYLSPTKALGADQLKALTSIISGRRDFSHLQPCAYD 144
Query: 338 GDTTQKDRMWLRDNARLLITNPDMLHMSIL---PYHGQFSRILSNLRLIAFSLVTTEVYL 394
GDT + R W R ++R + TNPDMLH+ IL G + S + F
Sbjct: 145 GDTDPEIRQWARAHSRWIFTNPDMLHLGILTGVATPGTHTGGASRGQWRQF--------- 195
Query: 395 IFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCM 454
F +R+VV+DE H Y+G FG +TA++LRRL RL GS+P+ + ++AT A+P
Sbjct: 196 -FAHLRYVVVDECHHYRGVFGSNTAMVLRRLLRLARAC-GSEPTVIAASATVADPAAALE 253
Query: 455 ELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEV 514
L + +DGSP ++ LW P + + V + N A S +E
Sbjct: 254 RLIG-EPAAGVTDDGSPRGERTVALWEP-AFVPGVTGE---------NDAPVRRSAGAEA 302
Query: 515 SYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRR 574
S L A+ V G R + F RSR+ E+ R++L +AP LV + YRAGY+A+DRRR
Sbjct: 303 SRLLADFVVEGARTLCFGRSRRGVEIAALGARDLLSHSAPDLVGKVAAYRAGYLADDRRR 362
Query: 575 IERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERP--SL 632
+E G+L GVA TNALELG+D+ +D + G+PG+IAS WQQAGR+GR+ +L
Sbjct: 363 LEAAISDGELVGVATTNALELGVDITGLDAVIIAGYPGTIASFWQQAGRAGRQRESGDAL 422
Query: 633 AVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKY 692
V VA + PLD Y + +P+ L +P+E ID N +L HL+CAA E PL E++
Sbjct: 423 VVLVARDDPLDTYLVHHPDALLATPVEAPVIDPTNPYILGPHLLCAATEFPLGDNEIERW 482
Query: 693 FGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQ 752
G + L G L A + G E P I IR + ++D
Sbjct: 483 ---GARDAVLQLAADGLLRK-----RKAGWYPAAGVE--PHGDIDIRGGIGGQVLIVDHS 532
Query: 753 SNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTD 812
S+E+L ++ +A V+ GAV++HQG +Y+V EL+L +AL + + T R+ T+
Sbjct: 533 SSELLGTVDAGRAPATVHPGAVHIHQGESYVVDELDLDEGLALAHPEEPDWTTSARETTE 592
Query: 813 IHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYS 872
+ V+ + +S + + V+ G+ R SG I D VEL +P+ +
Sbjct: 593 VAVT-------SVVSSRTYGPLSVAFVDVDVSHQVVGYLRSLP-SGEILDAVELDMPQQT 644
Query: 873 YESQAV-WIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHD 931
++AV + P+++ LHAA HA + ++P+ C+ D+ N H
Sbjct: 645 LHTRAVMYTLTPEALSEAGIDATRLPGALHAAEHAAIGLLPLVATCDRWDIGGLSTNLHP 704
Query: 932 SRYFPERILLYDRHPGGTGVSKQ 954
P + +YD + GG G +++
Sbjct: 705 DTGLPT-VFVYDGYLGGAGFAER 726
>gi|373459373|ref|ZP_09551140.1| DEAD/DEAH box helicase domain protein [Caldithrix abyssi DSM 13497]
gi|371721037|gb|EHO42808.1| DEAD/DEAH box helicase domain protein [Caldithrix abyssi DSM 13497]
Length = 760
Score = 380 bits (976), Expect = e-102, Method: Compositional matrix adjust.
Identities = 242/760 (31%), Positives = 390/760 (51%), Gaps = 64/760 (8%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
+++E L K Q + + + A P + AL GI++LY+HQAE+
Sbjct: 11 QLIEKLSKDAEFQRNITRWLVLEEQPARFAPFPQNVDRRLVQALNEKGITQLYTHQAEAF 70
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
AG+NVV+ T T+SGK+L YNLPV + + + + ALY+FPTKAL+QDQ+R +
Sbjct: 71 RKISAGENVVIVTPTASGKTLSYNLPVFQTILQNPEARALYLFPTKALSQDQVRETQDLI 130
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
I +DGDT R +R +++TNPDMLH +LP+H + ++ NL
Sbjct: 131 HRLQVDIKSFTFDGDTPVDIRRTIRSAGHIVVTNPDMLHQGVLPHHTLWIKLFENL---- 186
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
+FVV+DE HAY+G FG H A ++RRL R+C+ YGS P F+ S+A
Sbjct: 187 ---------------KFVVLDEIHAYRGVFGSHLANLMRRLKRICA-FYGSSPQFICSSA 230
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T ANP+E +L + LI N+G+P +K F+ +NP R +
Sbjct: 231 TIANPKELAEQLTG-QPVTLIDNNGAPRGKKHFLFYNPPVVHREL--------------- 274
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETA--PHLVDSICV 562
S ++EV + +++ G + I F RSR E++L+Y R++ + P+LV
Sbjct: 275 GLRRSVVNEVRQIVRKLLPTGAQMIVFARSRLRVEILLTYLRQVASQLKINPNLVRG--- 331
Query: 563 YRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAG 622
YR GY+ ++RR+IE G++ V +TNALELGID+G +D+++ G+PGSIAS WQQAG
Sbjct: 332 YRGGYLPKERRQIENGLKKGEIQVVVSTNALELGIDIGQLDISILAGYPGSIASTWQQAG 391
Query: 623 RSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEH 682
R+GRR+ SL + VA PLDQY +++PE + E ID N +L HL CAA E
Sbjct: 392 RAGRRQGTSLTLLVASSAPLDQYIIEHPEYFAEKNPESAQIDPDNLFILMSHLKCAAFEL 451
Query: 683 PLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIE 742
P + + F ++ + YL + L + + ++ E P+ +S+R
Sbjct: 452 PFE---ENEVFAPDITRPLL-----DYLVEENVLRKTEGKYFWM-REIYPADEVSLRNSS 502
Query: 743 SERYEVIDMQS-NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADL 801
E +ID N V+ E++ A V++ A+Y+H+G Y V EL+ K A + +
Sbjct: 503 PENVVIIDTSDHNRVIGEVDLFSAPELVHKDAIYIHEGVQYHVDELDWDEKKAYVHQVKV 562
Query: 802 KYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIF 861
++T T+I V + +I D K + VTT GF ++ +
Sbjct: 563 NHYTDAITKTNIKVL---DVLEEEIL-DSCKKVYGELAVSRVTT---GFKKIKFNTHENI 615
Query: 862 DTVELYLPKYSYESQAVWIQVPQSVKA-VVEQNFSFRSGLHAASHALLHVVPIYVRCNFS 920
++LP+ ++ A+W + + + Q GL ++ L +++P+YV C+ +
Sbjct: 616 GMGRVHLPEMEMQTSAMWWEFDDRLFSDPYFQESIIGEGLKGIAYTLNNLIPLYVMCDVT 675
Query: 921 DLA--PECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDM 958
D++ P P + I +YD++ GG G+SK++ ++
Sbjct: 676 DISVVPMVRAPFSHK---PTIYVYDKYQGGMGLSKKLYEI 712
>gi|78358642|ref|YP_390091.1| hypothetical protein [Desulfovibrio alaskensis G20]
gi|78221047|gb|ABB40396.1| Protein of unknown function DUF1998 [Desulfovibrio alaskensis G20]
Length = 986
Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 242/741 (32%), Positives = 379/741 (51%), Gaps = 92/741 (12%)
Query: 232 VLVEIPDALLDNTKSALKS-------TGISKLYSHQAESIMASLAGKNVVVATMTSSGKS 284
+L EIP T+ ++ G+ LY+HQA + AG++VVVAT T+SGK+
Sbjct: 32 ILPEIPARTAPATRPWPRAVQEVMLHAGVGSLYTHQALATDHIRAGRHVVVATPTASGKT 91
Query: 285 LCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIG--VYDGDTTQ 342
L YNLPV+E H+ + ALY+FP KALAQDQL L A+T + A +YDGDTT
Sbjct: 92 LIYNLPVIEQFLHNPETRALYLFPLKALAQDQLATLNALTAHWAADARPAAAIYDGDTT- 150
Query: 343 KDRMWLRDNAR-----LLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFL 397
W R R +L+TNP+MLH+SILP+H Q++R L+ L
Sbjct: 151 ---AWFRKKIRRQPPNVLLTNPEMLHLSILPHHEQWTRFLAGLS---------------- 191
Query: 398 FIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELA 457
FVV+DEAH Y+G G H A + RRL R+C+ YG+ PSFVFS+AT NP E L
Sbjct: 192 ---FVVVDEAHTYRGVLGSHMAQLFRRLERICTR-YGAAPSFVFSSATVGNPAELAANLT 247
Query: 458 NLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYL 517
+ + ++++ G+P ++ V +P SP S L
Sbjct: 248 GIRPVPVLES-GAPQGRRHVVFIDPPE------------------------SPASTAILL 282
Query: 518 FAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIER 577
+ GLR I +C+SR++ EL+ + A D I YRAG++ E+RR IE
Sbjct: 283 LKAALARGLRTIVYCQSRRMTELISLWA----GSKAGGYADRISAYRAGFLPEERRDIEA 338
Query: 578 DFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVA 637
G+L V T+ALELGID+G +D+ + +G+PG++ S Q+ GR GR ++ S V VA
Sbjct: 339 RMHSGQLLAVITTSALELGIDIGSLDLCILVGYPGTVMSTLQRGGRVGRAQQESAVVLVA 398
Query: 638 FEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGL 697
E LDQYFM++P+ F+ P E ++ N +LE+HL CAA E PL +++ + +
Sbjct: 399 GEDALDQYFMRHPDDFFERPPENAVLNPHNPVILERHLECAAAEFPLD-VHEPWLTDTAV 457
Query: 698 SSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVL 757
L+N G L + + ++ + K P + +R + + DM++ V+
Sbjct: 458 RQAAAELENTGLLLRN---EDGTRL---LAARKRPQRHVELRG-AGPSFHIQDMETGAVI 510
Query: 758 EEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSG 817
++ +AF + + GAVY+H+G ++++ L+ +++ A+++Y+T+ R
Sbjct: 511 GSVDGHRAFRETHPGAVYLHRGRSFVITGLDTAARTITAVAANVEYYTRVR--------- 561
Query: 818 GNNAYATKISKDQLTKTTAQALAC----TVTTTWFGFYRLWRGSGIIFDTVELYLPKYSY 873
GN +T+I + TKT C VT G+ + SG + L LP +
Sbjct: 562 GNK--STEILQVLDTKTAWNTRVCLARLRVTDQITGYEKRHARSGQMLGITPLDLPPNIF 619
Query: 874 ESQAVWIQVPQSVKAVVEQNF-SFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDS 932
E++ +W +V + + VE F F +HA HA + ++P+ V + +DL P
Sbjct: 620 ETEGLWFEVQDAARREVEDAFMHFMGSIHALEHAAIGILPLLVMTDRNDLG-GISTPMHP 678
Query: 933 RYFPERILLYDRHPGGTGVSK 953
+ + +YD PGG G+S+
Sbjct: 679 QVGRPCVFIYDGMPGGAGLSR 699
>gi|387873824|ref|YP_006304128.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium sp. MOTT36Y]
gi|443308744|ref|ZP_21038530.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium sp. H4Y]
gi|386787282|gb|AFJ33401.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium sp. MOTT36Y]
gi|442763860|gb|ELR81859.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium sp. H4Y]
Length = 777
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 253/746 (33%), Positives = 374/746 (50%), Gaps = 68/746 (9%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
HV ++ R + P + A GI+ +SHQ + + AG++VVV+T T+S
Sbjct: 25 HVAELPPRSGRPHDWPAWAEPDVVKAFADRGIAAPWSHQFAAADLAYAGRHVVVSTGTAS 84
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIG------V 335
GKSL Y LPVL AL+ D + LY+ PTKAL DQLRA A+T A + G
Sbjct: 85 GKSLAYQLPVLNALATDPRARVLYLSPTKALGHDQLRAAHALTAAIPRLHEPGFAVAPTA 144
Query: 336 YDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLI 395
YDGD+ + R + R+ +R L +NPDM+H+SIL H +++ +L LR
Sbjct: 145 YDGDSPAEVRRFARERSRWLFSNPDMIHLSILRNHARWAVLLRGLR-------------- 190
Query: 396 FLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCME 455
FVV+DE H Y+G FG + A++LRRL RLC+ Y S P+ +F++AT+ +P E
Sbjct: 191 -----FVVVDECHYYRGVFGSNVAMVLRRLLRLCAR-YSSAPTVIFASATTDSPGATATE 244
Query: 456 LANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVS 515
L L E + DGSP + LW P LR+ L N A S +E +
Sbjct: 245 LIGLPVQE-VTKDGSPQGARTVALWEP--ALRTDLVGE--------NGAPVRRSAGAEAA 293
Query: 516 YLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRI 575
+ A+++ G + + F RSR+ EL + LE+ AP L ++ YRAGY+AEDR +
Sbjct: 294 RVMADLIAEGAQTLTFVRSRRAAELTALGAQARLEDIAPELSRTVASYRAGYLAEDRTAL 353
Query: 576 ERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVY 635
ER G+L G+A TNALELG+D+ +D + GFPG++AS WQQAGRSGRR + +L V
Sbjct: 354 ERALAEGRLRGLATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVL 413
Query: 636 VAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGS 695
+A + PLD Y + P L P+E ID N +L L+CAA E PL D +
Sbjct: 414 IARDDPLDTYLVHNPAALLDKPVERVVIDPTNPYILGPQLLCAATELPLD---DAEVREL 470
Query: 696 GLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNE 755
G + L + G L S K F G E P + IR + +++ +
Sbjct: 471 GATDVADGLVDDGLLRR-----RSGKYFPAPGLE--PHAAVDIRGSTGGQIVIVEADTGR 523
Query: 756 VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHV 815
+L + +A V+ GAVY+HQG +Y+V L+ IA D Y T R+ TDI V
Sbjct: 524 LLGSADVGRAPASVHPGAVYLHQGESYVVDSLDTEEGIAFVHAEDPGYATFAREITDIVV 583
Query: 816 SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYES 875
+G A T + VT G+ R SG + D +EL +P+++ +
Sbjct: 584 TGSGERLA-------FGPVTLGLVPVRVTHRVVGYLRRLL-SGEVIDFIELDMPEHTLAT 635
Query: 876 QAVWIQVPQSVKAVVEQNFS---FRSGLHAASHALLHVVPIYVRCNFSDLA----PECPN 928
+V + + A++ + LHAA HA + ++P+ C+ D+ P
Sbjct: 636 TSVMYTITE--DALLRKGIDGTRIPGSLHAAEHAAIGLLPLVASCDRGDIGGLSTAVGPG 693
Query: 929 PHDSRYFPERILLYDRHPGGTGVSKQ 954
P P + +YD +PGG G +++
Sbjct: 694 PDG---LPS-VFVYDGYPGGAGFAER 715
>gi|406574120|ref|ZP_11049857.1| helicase family protein with metal-binding cysteine cluster
[Janibacter hoylei PVAS-1]
gi|404556477|gb|EKA61942.1| helicase family protein with metal-binding cysteine cluster
[Janibacter hoylei PVAS-1]
Length = 774
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 256/744 (34%), Positives = 381/744 (51%), Gaps = 77/744 (10%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
HVE + AR+ ++P + + AL GI++L+SHQA + A+ G++VV+AT T+S
Sbjct: 25 HVESLPAREPEHADVPTWVAPPLRQALAGAGIARLWSHQATAAQAAREGRHVVLATGTAS 84
Query: 282 GKSLCYNLPVLEAL------SHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGV 335
GKSL Y LP L A+ ++ ++ALY+ PTKALA DQL + + I
Sbjct: 85 GKSLGYLLPSLTAVLEGRAAANGRGATALYLSPTKALAADQLARIQSWAIP---GIRAAT 141
Query: 336 YDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLI 395
YDGDT +R W+RD+A +++TNPD++H S+LP H ++ +L LR
Sbjct: 142 YDGDTPTDERRWIRDHADVILTNPDLVHHSLLPGHEHWAHVLRRLR-------------- 187
Query: 396 FLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCME 455
+VVIDE H Y+G FG H AL++RRL R+ YG+DP FV ++AT +P H
Sbjct: 188 -----YVVIDECHVYRGVFGSHVALLIRRLRRVAR-RYGADPVFVLASATVGDPGGHATR 241
Query: 456 LANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVS 515
L L + +DGSP F LW P D + +R SP +E +
Sbjct: 242 LVGDDVLA-VTHDGSPRGAMTFALWQPPE-----------DDEGSRR------SPTTEAA 283
Query: 516 YLFAEMVQHGLRCIAFCRSRKLCE-LVLSYTREILEETAPHLVDSICVYRAGYVAEDRRR 574
L A +V ++ +AF RSR E L S R++ I YR GY+ E+RR
Sbjct: 284 DLMAHLVGRDVQTLAFARSRAGVEALATSAARQVSAADE----GRIAAYRGGYLPEERRV 339
Query: 575 IERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAV 634
IER L G+AATNALELGID+ +DV L G+PG +AS WQQAGR+GR + +LAV
Sbjct: 340 IERRLRERDLLGLAATNALELGIDIAGLDVVLMAGWPGRLASAWQQAGRAGRDGQDALAV 399
Query: 635 YVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFG 694
+A + PLD + + +PE +F +P+E +D N VL H+ CAA E P++L DE +FG
Sbjct: 400 LLAADDPLDTWVVDHPEAIFDAPVEASVLDPANVHVLVPHVACAAAEIPVTL-DDEGWFG 458
Query: 695 SGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN 754
GL+ + L +RG L P Y P +S+R I E +++ +S
Sbjct: 459 DGLAGVLEVLVDRGILRRRPG-------GWYWTRPDRPGEHVSLRGI-GEVVSIVEGRSG 510
Query: 755 EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIH 814
V+ I+ES A Q + GAV++HQG T++V EL+L A D + T + +
Sbjct: 511 RVVGTIDESSAHAQAHTGAVHVHQGRTFVVTELDLDQATATVVAGDPGWTTHAQSVSSFD 570
Query: 815 V---SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKY 871
+ G + ++S ++ V GF R SG + +L LP+
Sbjct: 571 IVAEEAGVDHGPVRVSFGRV----------DVRRQVTGFLRRLP-SGEVIGRHDLDLPER 619
Query: 872 SYESQAV-WIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPH 930
+ ++AV W P+++ A HAA HA + ++P+ C+ D+ + H
Sbjct: 620 TLSTRAVWWTMTPEALAAAGVAEADVPGAAHAAEHAAIGMLPLLATCDRWDIGGVSTDLH 679
Query: 931 DSRYFPERILLYDRHPGGTGVSKQ 954
P I++YD HPGG G + +
Sbjct: 680 PGTGLPT-IMVYDGHPGGAGFAAR 702
>gi|384134327|ref|YP_005517041.1| DEAD/DEAH box helicase [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
gi|339288412|gb|AEJ42522.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus
acidocaldarius subsp. acidocaldarius Tc-4-1]
Length = 760
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 243/735 (33%), Positives = 378/735 (51%), Gaps = 65/735 (8%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
+ AR + P L +++L GI +LY+HQ E+ AG++VV+AT T+SGK+L
Sbjct: 29 VPARIGRYADFPVELHPELRASLAVRGIERLYAHQREAWDLIQAGRDVVIATPTASGKTL 88
Query: 286 CYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDR 345
CYNLPVL+++ D ALY+FPTKALAQDQ+ L + + S+ YDGDT R
Sbjct: 89 CYNLPVLQSILRDPGVRALYVFPTKALAQDQVAELHDLVRNLKTSVHTFTYDGDTPIHAR 148
Query: 346 MWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVID 405
+R+ +++TNPDMLH +ILP+H ++ R+ NL R+VVID
Sbjct: 149 QKIREAGHIVVTNPDMLHAAILPHHTKWLRLFKNL-------------------RYVVID 189
Query: 406 EAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELI 465
EAH Y+G FG H A ++RRL R+ + YG+ P F+F +AT ANP E L T ++
Sbjct: 190 EAHIYRGVFGSHVANVIRRLLRIAA-FYGARPQFIFCSATIANPGELTSRLLGRET-AVV 247
Query: 466 QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHG 525
G+P +K +L+NP V++ S AA + L A ++QH
Sbjct: 248 SESGAPEGEKHVILYNP-----PVVDPSLGLRQSALRAARR----------LGARLLQHE 292
Query: 526 LRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLC 585
+ I F R+R EL+ SY R + + I YR GY+ +RR IER G++
Sbjct: 293 IPTILFARTRNQVELLASYLR---RDARDRVRSRIVSYRGGYLPNERRAIERGLREGQVL 349
Query: 586 GVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQY 645
GV +TNALELG+D+G + + +G+PGS+AS QQ GR+GRR+ S A++VA LDQ+
Sbjct: 350 GVVSTNALELGVDIGSLQAAITVGYPGSVASTRQQMGRAGRRKGISAAIFVATSSALDQW 409
Query: 646 FMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGI-TTL 704
+++PE L + E I N +L HL CAA E P S DE++ G+ TT+
Sbjct: 410 MVRHPEALLDASPEAARIYPDNLLILMDHLKCAAYELPFSA--DEQF-------GVETTV 460
Query: 705 KNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNE--VLEEIEE 762
+ YL L +A + + MP+H +S+R+ E ++D ++ V+ E++
Sbjct: 461 ELLDYLVDTRVLHRAADGRYFYMADDMPAHAVSLRSAAQENVVIVDQSAHPPTVIGEMDR 520
Query: 763 SKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAY 822
A ++E A+Y+HQ Y V++L+L + A + D Y+T + V N+
Sbjct: 521 FSALTMLHEEAIYLHQSQMYQVEKLDLENGKAFVRPVDCDYYTDAELAVHLQVLEENHL- 579
Query: 823 ATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQV 882
+ L T LA T T F +L + + ++YLP+ + W+
Sbjct: 580 ---TEEGPLCHYTGD-LAVHATPTLFKKIKLETHENVGWG--KIYLPEAELHTSGYWVTF 633
Query: 883 PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSD--LAPECPNPHDSRYFPERIL 940
+S + + + + L H L V ++ C SD +A E +P +R +
Sbjct: 634 DRSRWSASDDEWE--AALKGLGHVLKQAVALHAMCAASDVHVAVEVRDPQYAR---PSVY 688
Query: 941 LYDRHPGGTGVSKQV 955
+YD +PGG G++++V
Sbjct: 689 VYDAYPGGVGIAERV 703
>gi|302535288|ref|ZP_07287630.1| ATP-dependent RNA helicase [Streptomyces sp. C]
gi|302444183|gb|EFL15999.1| ATP-dependent RNA helicase [Streptomyces sp. C]
Length = 815
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 258/770 (33%), Positives = 392/770 (50%), Gaps = 77/770 (10%)
Query: 203 PLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAE 262
P +++ L +G ++ H E + R+ P + + +A++ GI + HQA
Sbjct: 47 PGTVLDRLSRGPSRAARITHTEHLPPREGRHAVWPHRIRTDVVAAIRDAGIDHPWEHQAA 106
Query: 263 SIMASLAGKNVVVATMTSSGKSLCYNLPVLEALS------HDLSSSALYMFPTKALAQDQ 316
+ +L G++VVVAT T+SGKSL Y PVL AL+ + ++ALY+ PTKALA DQ
Sbjct: 107 AAEHALDGESVVVATGTASGKSLAYLAPVLSALADGAEAPNGRGATALYLAPTKALAADQ 166
Query: 317 LRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRI 376
RA+ + ++ VYDGDT ++R W+R A ++TNPDMLH ILP H ++S
Sbjct: 167 RRAVRELAAPLGNAVRPAVYDGDTPVEEREWVRQYANYVLTNPDMLHRGILPSHPRWSSF 226
Query: 377 LSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSD 436
L LR +VVIDE H Y+G FG H A +LRRL RLC+ YGS+
Sbjct: 227 LKALR-------------------YVVIDECHTYRGVFGSHVAQVLRRLRRLCAR-YGSE 266
Query: 437 PSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTD 496
P F+ ++AT+++P L + E I +D SP + +F LW P T+
Sbjct: 267 PVFLLASATASDPAAAASRLTGVPVTE-ITDDASPRGEVVFALWEP----------PLTE 315
Query: 497 MDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHL 556
+ + A + ++ +E + L ++V G+R +AF RSR+ EL+ +E L L
Sbjct: 316 LRGEKGAPVRRTA-TAETADLLTDLVVQGVRTVAFVRSRRGAELIAVIAQERLAAVDRSL 374
Query: 557 VDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIAS 616
+ YR GY+ E+RR +ER G+L G+AAT ALELG+DV +D L G+PG+ AS
Sbjct: 375 PGRVAAYRGGYLPEERRALERALHSGQLLGLAATTALELGVDVSGLDAVLITGYPGTRAS 434
Query: 617 LWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLV 676
LWQQAGR+GR + +LAV VA + PLD Y + +PE LF+ P+E +D N VL HL
Sbjct: 435 LWQQAGRAGRSGQGALAVLVARDDPLDTYLVHHPEALFRQPVEATVLDPDNPYVLAPHLC 494
Query: 677 CAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSS------AKIFEYIGHEK 730
AA E PL+ D FG RG + P L+++ A + + E+
Sbjct: 495 AAAAELPLTEA-DLDLFGP---------AARGLM---PQLEAAKLLRRRATAWHWTRRER 541
Query: 731 MPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLS 790
S IR ++++ + +L ++E+ + V++GAV++HQG TYLVK L+L
Sbjct: 542 A-SDLTDIRGGGGRPVQIVEASTGRLLGTVDEAASHTAVHDGAVHLHQGRTYLVKHLDLE 600
Query: 791 SKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALAC----TVTTT 846
AL ++A+ + T RD T I I + + A C VT
Sbjct: 601 DSAALVEEANPPFSTTARDTTSI-----------SILETETEIPWGPARLCFGSVEVTNQ 649
Query: 847 WFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVP--QSVKAVVEQNFSFRSGLHAAS 904
+ R +G + +L LP + ++AVW V Q +A + LHAA
Sbjct: 650 VVSYLRRKLITGEVLGEAKLDLPPRTLRTRAVWWTVTEDQLDEARIAPEI-LGGALHAAE 708
Query: 905 HALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
HA + ++P++ C+ D+ H P + +YD HPGG G +++
Sbjct: 709 HASIGLLPLFATCDRWDIGGVSVPLHPDTLLPT-VFVYDGHPGGAGFAER 757
>gi|344228586|gb|EGV60472.1| P-loop containing nucleoside triphosphate hydrolase protein [Candida
tenuis ATCC 10573]
Length = 1131
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 249/743 (33%), Positives = 392/743 (52%), Gaps = 73/743 (9%)
Query: 256 LYSHQAESI--MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDL--------SSSALY 305
LYSHQ E++ + +V+ +T TSSGKSL Y +P+L ++ D+ +S+A++
Sbjct: 306 LYSHQTEALEHILDYTKTHVITSTSTSSGKSLIYQIPILNSILWDMENGNTNHRASTAIF 365
Query: 306 MFPTKALAQDQLRALLAMTKAF----DASIDIGVYDGDTTQKDRMWLRDNARLLITNPDM 361
+FPTKALAQDQ + L + K + SI + YDGDT K + +R A ++ TNPD
Sbjct: 366 IFPTKALAQDQKKHLEDLIKHIPMPKNGSIRVDTYDGDTDTKTKGTIRRFANIIFTNPDT 425
Query: 362 LHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALI 421
+H SILP H S +S + ++F+V+DE H YKG FG + + +
Sbjct: 426 IHASILPNHEGMS----------YSDSSGGWQYFLHALKFIVVDEIHVYKGTFGINVSFV 475
Query: 422 LRRLCRLCSHVYGS-DPSFVFSTATSANPREHCMELANLS---TLELIQNDGSPCAQKLF 477
+ RL R+ SH S F+ S+AT NP H + +S + I NDGS C +K F
Sbjct: 476 MARLLRVLSHSSSSHQVKFISSSATVLNPESHFRVVCAISPEDNVVHISNDGSACCEKKF 535
Query: 478 VLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHG--LRCIAFCRSR 535
++WNP + NK + I+E + + ++ ++ I FC R
Sbjct: 536 LIWNPPPLM------------------NKRVNNITESARVLLSLLGGSKFIKVIVFCPIR 577
Query: 536 KLCELVLSYTREIL--EETAPHLVD--SICVYRAGYVAEDRRRIERDFFGGKLCGVAATN 591
++CEL++ R +L E A + I YR GY DRR IE+ F G++ + ATN
Sbjct: 578 QVCELLMKQIRSLLITSEYADLGIKEGDIMAYRGGYSKTDRRNIEQKMFNGEVRALVATN 637
Query: 592 ALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS--GRRERPSLAVYVAFEGPLDQYFMKY 649
ALELG+D+ +DV + FP S +++ QQ GR+ GR + SLA++VA P+D Y++K+
Sbjct: 638 ALELGVDLSDLDVVITCSFPVSKSNMHQQFGRAGRGRNAKGSLAIFVAGAIPVDSYYVKH 697
Query: 650 PEKLF-KSPIE--CCH--IDAQNHK-VLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITT 703
PE+L KS E C I HK ++E HL CAA E P+ + D K+F + S+
Sbjct: 698 PEELLDKSTYEDLCVESLIGVGMHKLIMENHLQCAAFELPIDIDQDAKWFCNYESTPKKV 757
Query: 704 LKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQS--NEVLEEIE 761
R + + D + + P+ ++IRA+ES Y V+D+ + N V+EE+E
Sbjct: 758 QIFRTACAEKLNQDKLHRYRTSPDYLPWPASKVAIRAVESPAYAVVDITNGRNIVIEEVE 817
Query: 762 ESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNA 821
ES+ F +YEG +++HQG YLVK+ N K A Q+ + + T RD+TD+
Sbjct: 818 ESRTSFTLYEGGIFLHQGLPYLVKDFNSDKKYAKVQRVTVDWVTSQRDFTDVDPHIIEYI 877
Query: 822 YATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQ 881
K +++ A +TT FGF+++ + + II + VE+ P Y+S+ W+
Sbjct: 878 RCLKSPMREVSDIPAYFGTIEITTIVFGFFKVNKKNEII-EAVEVKNPPVRYKSKGFWLD 936
Query: 882 VPQSV-KAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNP-------HDSR 933
+P+ V A+VE++ S G+HAA H L++++P+Y+ + ++L EC P R
Sbjct: 937 IPKPVLDAIVEKSLSPAGGIHAAQHCLMNILPLYISGSATELLTECKAPEKEFARRQTKR 996
Query: 934 YFPERILLYDRH--PGGTGVSKQ 954
P R++ YD P G+GVS +
Sbjct: 997 KRPARLIFYDSKGGPSGSGVSAK 1019
>gi|226363670|ref|YP_002781452.1| helicase [Rhodococcus opacus B4]
gi|226242159|dbj|BAH52507.1| putative helicase [Rhodococcus opacus B4]
Length = 787
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 256/738 (34%), Positives = 380/738 (51%), Gaps = 58/738 (7%)
Query: 225 DISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKS 284
++ AR + L E P + A++ GI++ ++HQA + + G NVVV+T T+SGKS
Sbjct: 42 EMPARTSQLSEWPAWAHPSVVRAMQENGIARPWTHQAAAADLAHHGTNVVVSTGTASGKS 101
Query: 285 LCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAM--TKAFDASIDIG-----VYD 337
L Y LPVL L+ D ++ALY+ PTKAL DQLRA+ A+ ++ DA D+ V+D
Sbjct: 102 LAYQLPVLTTLATDPRATALYLSPTKALGADQLRAVTALVDSEILDAGDDLSSACPCVFD 161
Query: 338 GDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFL 397
GDT + R W R+N+R L TNPDMLH+S+L H +++ NL
Sbjct: 162 GDTPLEVRHWARENSRWLFTNPDMLHISLLRTHQRWAHFFRNLT---------------- 205
Query: 398 FIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELA 457
+VVIDE H+Y+G FG + AL+LRRL R+ + YG+DP FV ++AT+A+P L
Sbjct: 206 ---YVVIDECHSYRGVFGSNVALVLRRLRRIAA-RYGADPVFVLASATTADPGAAASRLI 261
Query: 458 NLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYL 517
E+++ DGSP + LW P +R V ++ + + R A SE + +
Sbjct: 262 GAPCAEIVE-DGSPHGPRTVALWEP-PLMREVTGENGSPV---RRPAG------SEAARI 310
Query: 518 FAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIER 577
A+++ G R + F RSR+ EL T+ +L E P L + YRAGY+AEDRR +E
Sbjct: 311 MADLMVEGARTLTFVRSRRGAELTAMATKRLLGEIDPDLASRVASYRAGYLAEDRRELET 370
Query: 578 DFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVA 637
G L G A TNALELG+D+ +D + GFPG++AS WQQ GRSGRR SL V VA
Sbjct: 371 ALADGTLLGAATTNALELGVDIAGLDAVVVAGFPGTVASFWQQGGRSGRRGEGSLVVLVA 430
Query: 638 FEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGL 697
+ PLD Y + +P L P+E D N VL L+CAA+E PLS E + G
Sbjct: 431 RDDPLDTYLVHHPSALLDKPVEATVTDPSNPYVLGPQLLCAAMELPLSDAEAEAF---GA 487
Query: 698 SSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVL 757
+ L +G + + F G P + IR + ++ +S +L
Sbjct: 488 LDVLAKLSEQGLIRR-----RAHGWFVTAGTN--PHGAVDIRGGIGTQVAIVVSESGRML 540
Query: 758 EEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSG 817
++ +A + GAV++HQG +Y+V EL+L +AL D + T R+ T+I V+
Sbjct: 541 GTVDTGRAPATAHPGAVHIHQGESYVVDELDLDQGLALVHAEDPDWTTSARETTEITVT- 599
Query: 818 GNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQA 877
+ + + Q + VT G+ R SG I D VEL +PK++ ++A
Sbjct: 600 ------SVLEQKQFGDVEVALVEVEVTHQVIGYLRRLS-SGEILDAVELDMPKHTLPTRA 652
Query: 878 VWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFP 936
V V P+ + LHAA HA + ++P+ C+ D+ H P
Sbjct: 653 VMYTVTPELLLQAGVPAERVPGALHAAEHAAIGLLPLVAVCDRGDIGGVSTALHADTGLP 712
Query: 937 ERILLYDRHPGGTGVSKQ 954
+ +YD H GG G + +
Sbjct: 713 T-VFVYDGHAGGAGFADR 729
>gi|383826042|ref|ZP_09981184.1| putative helicase [Mycobacterium xenopi RIVM700367]
gi|383333804|gb|EID12252.1| putative helicase [Mycobacterium xenopi RIVM700367]
Length = 797
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 250/718 (34%), Positives = 367/718 (51%), Gaps = 61/718 (8%)
Query: 247 ALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYM 306
A GIS +SHQ + + AG++VV++T T+SGKSL Y LP+L AL+ D + ALY+
Sbjct: 71 AFNDYGISSPWSHQYRAAELAHAGRHVVLSTGTASGKSLAYQLPILNALAADPRARALYL 130
Query: 307 FPTKALAQDQLRALLAMTKAFDASIDIG--VYDGDTTQKDRMWLRDNARLLITNPDMLHM 364
PTKAL DQLR A+T A D+ YDGD+ + R + R+ +R L +NPDM+H+
Sbjct: 131 SPTKALGHDQLRTAHALTAAIPRLADVAPTAYDGDSPAEVRRFARERSRWLFSNPDMVHL 190
Query: 365 SILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRR 424
SIL H +++ L LR FVVIDE H Y+G FG + A++LRR
Sbjct: 191 SILRNHARWAVFLRGLR-------------------FVVIDECHYYRGVFGSNVAMVLRR 231
Query: 425 LCRLCSHVYGSD---PSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWN 481
L RLC+ P+F+F++AT+A+P EL +E + +DGSP + LW
Sbjct: 232 LLRLCARYAAHPDVRPTFIFASATTASPGATASELIG-QPVEEVTDDGSPQGARTVALWE 290
Query: 482 PTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELV 541
P LR L N A S +E + L A++V G R + F RSR+ EL
Sbjct: 291 P--ALRRDLTGE--------NGAPVRRSAGAEAARLMADLVAEGARTLTFVRSRRGAELT 340
Query: 542 LSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGH 601
R L + AP L D + YRAGY+AE+R + G+L G+A TNALELG+D+
Sbjct: 341 ALAARSRLRDIAPELADKVASYRAGYLAEERSALAHALAEGRLRGLATTNALELGVDIAG 400
Query: 602 IDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECC 661
+D + GFPG++AS WQQAGRSGRR + +L V +A + PLD Y + +P L PIE
Sbjct: 401 LDAVVIAGFPGTVASFWQQAGRSGRRGQGALIVLIARDDPLDTYLVHHPAALLDKPIERV 460
Query: 662 HIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAK 721
ID N +L L+CAA E L D++ +TL + G L K
Sbjct: 461 VIDPANPYLLGPQLLCAATELTLD---DDEVRALRAEDVASTLVDDGLLRH-----RFGK 512
Query: 722 IFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHT 781
F G + P+ + IR + +++ + +L S+A V+ GAVY+HQG +
Sbjct: 513 YFPAPGLDPHPA--VDIRGPTDGQVVIVEADTGRLLGTASASQAPATVHPGAVYLHQGDS 570
Query: 782 YLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALAC 841
Y+V L+ IA D Y T R+ TDI V+G + + T +
Sbjct: 571 YVVDSLDTEDGIAFVHAEDPGYATFAREVTDIAVTG-------EGERMVFGPVTLGLVPV 623
Query: 842 TVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQV-PQSVKAVVEQNFSFRSGL 900
TVT G+ R R +G + D ++L +P ++ + AV + P+S++ L
Sbjct: 624 TVTNQVTGYLRR-RLNGEVLDFIDLDMPAHTLPTTAVMYTITPESLQRNGIDGPRIPGAL 682
Query: 901 HAASHALLHVVPIYVRCNFSDL----APECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
HAA HA + ++P+ C+ D+ A P+P P + +YD +PGG G +++
Sbjct: 683 HAAEHAAIGLLPLVASCDRGDIGGLSAAVGPDP--LARLPS-VFVYDGYPGGAGFAER 737
>gi|254821832|ref|ZP_05226833.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium intracellulare ATCC 13950]
Length = 777
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 252/746 (33%), Positives = 375/746 (50%), Gaps = 68/746 (9%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
HV ++ R + P + A GI+ +SHQ + + AG++VVV+T T+S
Sbjct: 25 HVAELPPRSGRPHDWPAWAEPDVVKAFADRGIAAPWSHQFAAAELAYAGRHVVVSTGTAS 84
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIG------V 335
GKSL Y LPVL AL+ D + LY+ PTKAL DQLRA A+T A + G
Sbjct: 85 GKSLAYQLPVLNALATDPRARVLYLSPTKALGHDQLRAAHALTAAIPRLHEPGFAVAPTA 144
Query: 336 YDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLI 395
YDGD+ + R + R+ +R L +NPDM+H+SIL H +++ +L LR
Sbjct: 145 YDGDSPAEVRRFARERSRWLFSNPDMIHLSILRNHARWAVLLRGLR-------------- 190
Query: 396 FLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCME 455
FVV+DE H Y+G FG + A++LRRL RLC+ Y S P+ +F++AT+ +P E
Sbjct: 191 -----FVVVDECHYYRGVFGSNVAMVLRRLLRLCAR-YSSAPTVIFASATTDSPSATATE 244
Query: 456 LANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVS 515
L L E + DGSP + LW P LR+ L N A S +E +
Sbjct: 245 LIGLPVQE-VTKDGSPQGARTVALWEP--ALRTDLVGE--------NGAPVRRSAGAEAA 293
Query: 516 YLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRI 575
+ A+++ G + + F RSR+ EL + L++ AP L ++ YRAGY+AEDR +
Sbjct: 294 RVMADLIAEGAQTLTFVRSRRAAELTALGAQARLDDIAPELSRTVASYRAGYLAEDRTAL 353
Query: 576 ERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVY 635
ER G+L G+A TNALELG+D+ +D + GFPG++AS WQQAGRSGRR + +L V
Sbjct: 354 ERALAEGRLRGLATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVL 413
Query: 636 VAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGS 695
+A + PLD Y + P L P+E ID N +L L+CAA E PL + +
Sbjct: 414 IARDDPLDTYLVHNPAALLDKPVERVVIDPTNPYILGPQLLCAATELPLDEPEVRELGAT 473
Query: 696 GLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNE 755
++ G L + G L S K F G E P + IR + +I+ +
Sbjct: 474 DVADG---LVDDGLLRR-----RSGKYFPAPGLE--PHAAVDIRGSTGGQIVIIEADTGR 523
Query: 756 VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHV 815
+L + +A V+ GAVY+HQG +Y+V L+ IA D Y T R+ TDI V
Sbjct: 524 LLGSTDVGRAPASVHPGAVYLHQGESYVVDSLDTEEGIAFVHAEDPGYATFAREITDIVV 583
Query: 816 SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYES 875
+G A T + VT G+ R SG + D +EL +P+++ +
Sbjct: 584 TGTGERLA-------FGPVTLGLVPVRVTHRVVGYLRRLL-SGEVIDFIELDMPEHTLAT 635
Query: 876 QAVWIQVPQSVKAVVEQNFS---FRSGLHAASHALLHVVPIYVRCNFSDLA----PECPN 928
+V + + A++ + LHAA HA + ++P+ C+ D+ P
Sbjct: 636 TSVMYTITE--DALLRKGIDGTRIPGSLHAAEHAAIGLLPLVASCDRGDIGGLSTAVGPG 693
Query: 929 PHDSRYFPERILLYDRHPGGTGVSKQ 954
P P + +YD +PGG G +++
Sbjct: 694 PDG---LPS-VFVYDGYPGGAGFAER 715
>gi|323449985|gb|EGB05869.1| hypothetical protein AURANDRAFT_10212 [Aureococcus anophagefferens]
Length = 723
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 267/755 (35%), Positives = 396/755 (52%), Gaps = 78/755 (10%)
Query: 217 QGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVA 276
+GQ+ HVE + AR A + L +A +L+SHQA ++ A+L G +V++A
Sbjct: 2 EGQIAHVETVPARAATFGALQSKLPAALAAATAG---RRLWSHQALAVDAALGGHHVMLA 58
Query: 277 TMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVY 336
T T+SGKSL + LP + A + + +L++FPTKALAQDQ+ +L + + +
Sbjct: 59 TGTASGKSLAFTLPAVAA-ALERRERSLFLFPTKALAQDQVASLRELLEPL--GLACATL 115
Query: 337 DGDTTQKDRMWLRD-NARLLITNPDMLHMSILP-YHGQFSRILSNLRLIAFSLVTTEVYL 394
DGDT + DR + +++TNPDM+H ++LP G++ R+L + VT+
Sbjct: 116 DGDTPRDDRATIAAAPPAVVVTNPDMIHATLLPGAGGEWRRLLED--------VTS---- 163
Query: 395 IFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCM 454
VV+DEAH Y GAFG H A +LRRL R G F +AT ANPREH
Sbjct: 164 -------VVVDEAHVYVGAFGTHVAAVLRRLSR----ALGGAARFFCCSATIANPREHAA 212
Query: 455 EL---ANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPI 511
L + ++ DGSP K ++WNP +K + D AA K
Sbjct: 213 RLLPPGGGRDIVVVDGDGSPRGAKQVIVWNPP-------HKPRADA-----AAAKRPRTS 260
Query: 512 SEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEET-APHLVDSICVYRAGYVAE 570
+ LFA +V+ G R +AF R+RKL ELVL Y +E LE AP L + YR GY E
Sbjct: 261 RDAWRLFAALVEGGTRTLAFGRTRKLVELVLGYAKERLEAGRAPELAARVAAYRGGYRKE 320
Query: 571 DRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGR-RER 629
DRRRIER FGG L GV ATNALELG+DVG +D T+HLG PGSIASLWQQAGR+GR
Sbjct: 321 DRRRIERGLFGGGLAGVVATNALELGVDVGDLDATVHLGHPGSIASLWQQAGRAGRDANS 380
Query: 630 PSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYD 689
S A+ V ++ P+DQ+F + L K P+E + N VL LVCAA E PL D
Sbjct: 381 TSAAIVVCWDSPIDQHFARCGGDLLKRPMEPAALQVANESVLADQLVCAAAEAPLE-ARD 439
Query: 690 EKYFGSGLSSGITTLKNRGY------LSSDPSL-DSSAKIFEYIGHEKMPSHTISIRAIE 742
+F L+ G Y +D SL ++ + H + +S+R ++
Sbjct: 440 RPFF--ALACGCGGGDCGAYDRALTMRKADRSLREAPGGGWAAAPHAADHARAVSLRVVD 497
Query: 743 SERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQK-ADL 801
+ V V++E+ S+AF+++YEGAVY+ Q YLV L++ + A ++
Sbjct: 498 PVTFSV--KCGGAVVDEVPYSRAFYELYEGAVYLIQAAPYLVTRLDVMTHEATVKRLGAC 555
Query: 802 KYFT-KTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGII 860
Y T +R++TD+ K+ + T V++ +G+ ++ + + I
Sbjct: 556 DYITSSSRNHTDVD--------PEKVLRSNREVRTG---VVHVSSKVWGYRKVCKKTLRI 604
Query: 861 FDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFS 920
E LP + ++A +++ A+ + R+GLHA +HALL + P++V C+
Sbjct: 605 LSMHEFSLPNLEFTTRAT-----RALDAIAARRLDARAGLHALNHALLALAPLFVLCDPG 659
Query: 921 DLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
D+A E P +R P R ++YD PGG GV++++
Sbjct: 660 DVATEHVYPFQTRPRPFRAIVYDARPGGLGVAEEL 694
>gi|359774935|ref|ZP_09278281.1| putative ATP-dependent helicase [Arthrobacter globiformis NBRC
12137]
gi|359307835|dbj|GAB12110.1| putative ATP-dependent helicase [Arthrobacter globiformis NBRC
12137]
Length = 798
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 240/755 (31%), Positives = 374/755 (49%), Gaps = 70/755 (9%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATM 278
Q+ HV I AR AV PD + +A GI + Y HQ + + G +VV+AT
Sbjct: 19 QLRHVRTIPARAAVHEPWPDWAHPDLVAAYGKLGIHQPYRHQIRAADIAHGGGHVVIATG 78
Query: 279 TSSGKSLCYNLPVLEALS-------------HDLSSSALYMFPTKALAQDQLRALLAMTK 325
T+SGKSL Y LP L+A+ HD + LY+ PTKALA DQL A+ ++
Sbjct: 79 TASGKSLAYQLPALDAIHRSELRVLSDPGKIHDDGAVTLYLSPTKALAADQLAAIRSLNL 138
Query: 326 AFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAF 385
++ YDGDT Q R W+RD+A ++ NPDMLH ILP H ++
Sbjct: 139 P---TVRAETYDGDTDQASRRWIRDHANFILANPDMLHFGILPNHAWWAGF--------- 186
Query: 386 SLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSD-----PSFV 440
F +R+V++DEAH+Y+G FG H A ++RRL R+C++ Y +D P F+
Sbjct: 187 ----------FRRLRYVIVDEAHSYRGVFGSHVANLMRRLRRICAY-YAADGNAAGPVFI 235
Query: 441 FSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDT 500
++AT++ P + L + ++ + D SP W P L V +
Sbjct: 236 AASATASEPEKSFGRLIG-AAVQGVSEDSSPHGSTTVAFWEP--ALSEVRGE-------- 284
Query: 501 RNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSI 560
N A + + ++E + L A +V +R IAF +SR+ E + S T+ +L+E P L +
Sbjct: 285 -NGAKERRTAVAETADLLANLVSSRVRTIAFIKSRRGAETISSITKRLLDEVDPSLPQRV 343
Query: 561 CVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQ 620
YR+GY+ E+RR +ER G+L G+++T+ALELGID+ +D L G+PG+ ASL+QQ
Sbjct: 344 AAYRSGYLPEERRALERALRTGQLLGISSTSALELGIDISGLDAVLVAGWPGTRASLFQQ 403
Query: 621 AGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAAL 680
GR+GR + ++A +VA + PLD Y + +PE +F +E D N VL HL AA
Sbjct: 404 IGRAGRAGQDAIAAFVASDDPLDTYLVNHPEAIFDVSVEATVFDPSNPYVLGPHLCAAAA 463
Query: 681 EHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRA 740
E PL + + FG+ + L +GYL P+ + H + + +++RA
Sbjct: 464 ELPLG-VAELPLFGATAEKLLGQLVAQGYLRRRPA-------GWFWTHAQSAAAMVNLRA 515
Query: 741 IESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKAD 800
++D + +L ++ + +Q + GAVY+HQG +Y+V++LN + ++A+
Sbjct: 516 DGGGPVSIVDADTGSLLGTMDSPQTHYQAHTGAVYVHQGDSYVVEDLNEDDHCVVVRRAN 575
Query: 801 LKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGII 860
Y+T RD T I V T+ + Q VTT F R S +
Sbjct: 576 PDYYTTARDVTQIEV------LETQRTA-QWGDVAVHFGDVKVTTQVVSFQRKALISNEV 628
Query: 861 FDTVELYLPKYSYESQAVW-IQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNF 919
L L ++AVW + +S+ F LHAA HA + ++P+ +
Sbjct: 629 LGEEPLDLGARDLFTKAVWFVMENRSLTGAGLIEAQFPGALHAAEHAAIGLLPLVASSDR 688
Query: 920 SDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
D+ H P I +YD HPGG G +++
Sbjct: 689 WDIGGVSTAIHADTGVPT-IFVYDGHPGGAGFAER 722
>gi|116196494|ref|XP_001224059.1| hypothetical protein CHGG_04845 [Chaetomium globosum CBS 148.51]
gi|88180758|gb|EAQ88226.1| hypothetical protein CHGG_04845 [Chaetomium globosum CBS 148.51]
Length = 1137
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 261/783 (33%), Positives = 401/783 (51%), Gaps = 131/783 (16%)
Query: 205 EMVEHLRKGIGSQGQMVHVED--ISARKAVLVEIPDALL--DNTKSALKSTGISKLYSHQ 260
E+V+ ++ GQ+V A+ AV ++ D LL D + + GI++ ++HQ
Sbjct: 349 EIVQEIKDSPWYTGQIVPDGHRVFEAQDAVYGDL-DFLLSQDLVNTLYNTKGITRFFAHQ 407
Query: 261 AESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL 320
AE+I A G NVVVAT TSSGKSL Y LPVL AL D ++ A+Y+FPTKALAQDQ R+L
Sbjct: 408 AEAINALHEGYNVVVATSTSSGKSLIYQLPVLHALEQDHNTRAMYIFPTKALAQDQRRSL 467
Query: 321 LAMTKAFDASIDIGV--YDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILS 378
M D+ V +DGDT +R +RD+AR++ TNPDMLH++ILP ++ L
Sbjct: 468 REMVGFMPGMGDVLVETFDGDTPMSERNVIRDDARIIFTNPDMLHITILPQEDRWRTFLK 527
Query: 379 NLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPS 438
N +++VV+
Sbjct: 528 N-------------------LKYVVV---------------------------------- 534
Query: 439 FVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMD 498
NP EH ++ + + L+ DGSP +K F+ WN T
Sbjct: 535 --------GNPEEHFKKIFGIEDVRLVDFDGSPSGRKEFLCWN-------------TPYK 573
Query: 499 DTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCE-LVLSYTREILEETAPHLV 557
D + A+ + + E S LF E++ G+R IAFCR R+ CE LV + +E++ +V
Sbjct: 574 DPGDPASGRGNAMLECSRLFCELILRGVRVIAFCRVREQCEKLVSAVKQELVTLGRSEVV 633
Query: 558 DSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASL 617
+ YR GY A+DRR+IE + F GKL G+ AT ALELG+D+G +D L GFP +IA+L
Sbjct: 634 ARVMGYRGGYTAQDRRQIESEMFEGKLLGIVATTALELGVDIGTLDCVLTWGFPYTIANL 693
Query: 618 WQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVC 677
QQ+GR+GRR + SL++ V DQ++M+ P++LF P +D N V E H+ C
Sbjct: 694 RQQSGRAGRRNKDSLSILVGDGFATDQHYMQNPDELFTKPNCELQVDLDNMLVKEGHVQC 753
Query: 678 AALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIG----HEK--- 730
AA E P+ D YFG+ L P L S I + G H +
Sbjct: 754 AAYEMPIRPAEDATYFGNDL----------------PQLCSERLIQDETGFYHCHPRFRP 797
Query: 731 MPSHTISIRAIESERYEVIDMQSNE--VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELN 788
+PS +SIR E + + +ID +N VLEE+E S+A F +Y+GA+++HQG+TYLV++ N
Sbjct: 798 LPSRFVSIRDTEEDHFAIIDTTNNRNVVLEELEASRATFTLYDGAIFLHQGNTYLVRDFN 857
Query: 789 LSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACT--VTTT 846
+A ++ + + T RDYTD+ + T+ K ++T + ++A T +
Sbjct: 858 PDKHLARVERVKVDWLTSQRDYTDV------DPVETEAVK-RITGSRSRAFYGTIRIRQV 910
Query: 847 WFGFYRL-WRGSGIIFDTVELYLPKYSYESQAVWIQVPQ-SVKAVVEQNFSFRSGLHAAS 904
FG++++ R + I D V++ P S+ +W+ VPQ ++ + + + + +HAA
Sbjct: 911 VFGYFKVDARRNNRIVDAVDVDNPPVIRYSKGMWLDVPQRALDILSARRLNAAAAIHAAQ 970
Query: 905 HALLHVVPIYVRCNFSDLAPECPN-----PHDS------RYFPERILLYDRH--PGGTGV 951
HAL+ ++P +V D+ EC + H+S R P R+ LYD GG+G+
Sbjct: 971 HALVSLIPNFVISTPGDVRTECKSGRKELSHNSKKRETQRKRPARLTLYDAKGGAGGSGI 1030
Query: 952 SKQ 954
+ +
Sbjct: 1031 NTK 1033
>gi|238878223|gb|EEQ41861.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 1123
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 260/777 (33%), Positives = 398/777 (51%), Gaps = 99/777 (12%)
Query: 235 EIPDALLDNTKSALKSTGISKLYSHQA---ESIMASLAGKNVVVATMTSSGKSLCYNLPV 291
++ DALL TK+ G LYSHQA E+++ +V+V+T T+SGKSL Y +PV
Sbjct: 281 DLKDALL-KTKNICSEDG---LYSHQAGALETLLNPANKSHVIVSTSTASGKSLIYQIPV 336
Query: 292 LEALSHDLSS-------SALYMFPTKALAQDQLRALLAMTKAFDAS----IDIGVYDGDT 340
L ++ D+SS +A ++FPTKALAQDQ+R K + I + YDGDT
Sbjct: 337 LNSILWDISSGLKGRHTTAFFIFPTKALAQDQIRHFREFLKNLPTASSRPIIVNTYDGDT 396
Query: 341 TQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIR 400
K+R + + ++ TNPD +H SILP H +N + +L +
Sbjct: 397 PFKERDKISKESDIIFTNPDTIHASILPNHS-----FNNWKEFLGAL------------K 439
Query: 401 FVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDP-SFVFSTATSANPREHCMELANL 459
FVV+DE H YKG FG + ++ RL R+ + + D ++ +AT NP H + +L
Sbjct: 440 FVVMDELHVYKGTFGVNVGFVMGRLSRMKNLLSRDDSIQYISCSATIHNPVSHFRTVCSL 499
Query: 460 STLELI---QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSY 516
ELI DGSPC +K ++WNP + K +DT + ISE +
Sbjct: 500 PENELIVHVDQDGSPCCEKKLIVWNPPPLMNQRGQK-----EDTVDKYVPRVGMISESAK 554
Query: 517 LFAEMV--QHGLRCIAFCRSRKLCELVLSYTREILEETAPH---LVDSICVYRAGYVAED 571
L +V L+ I FC R +CE+++ R +L+ + + I YR GY D
Sbjct: 555 LLVNLVTANDSLKIIVFCPIRVVCEMLMKEVRHLLQNSFKNSGITQSDIMAYRGGYSKSD 614
Query: 572 RRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERP- 630
RR IE+ F G+L + ATNALELGID+ H+DV + GFP S ++L QQ GR+GRR+
Sbjct: 615 RRIIEQKMFSGQLRAIVATNALELGIDLSHLDVVITCGFPMSKSNLHQQFGRAGRRKNAN 674
Query: 631 -SLAVYVAFEGPLDQYFMKYPEKLFKSPIE-CCHIDAQNHK----VLEQHLVCAALEHPL 684
SLA++V + P+DQY+++ P +L + E C ++ + +LE+HL CAA E P+
Sbjct: 675 GSLAIFVPGKNPIDQYYLENPHELLGNDYEDLCVSGVRDMECGKMILERHLQCAAYEEPI 734
Query: 685 SLIYDEKYFGSGLSSGI--TTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIE 742
L D K+ G S LK L D ++ K + P +SIRA+E
Sbjct: 735 EL-DDIKWLMPGGSKKDFEDVLKTNLILDIDGKFKTNPKYY------PKPHKVVSIRAVE 787
Query: 743 SERYEVIDMQSNE--VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKAD 800
+ V+D+ +N ++EEIE S+ F +YEG +++HQG YLVKE N A ++ +
Sbjct: 788 EPAFAVVDITNNRNIIIEEIEFSRTTFTLYEGGIFLHQGQPYLVKEFNDKEFYAKVERVN 847
Query: 801 LKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTV-------TTTWFGFYRL 853
+ + T RDYTD+ + + K +AL V T FGF+++
Sbjct: 848 VDWTTSQRDYTDV------DPEEVEFVKPLYPIDAPKALDIPVFSGKVKITMKVFGFFKV 901
Query: 854 WRGSGIIFDTVELYLPKYSYESQAVWIQVPQ-SVKAVVEQNFSFRSGLHAASHALLHVVP 912
R I+ + VE+ P S+ W+ VPQ +++ V E+ S G+HAASHA+++++P
Sbjct: 902 NRREEIL-EVVEVKNPPVIAFSKGFWLNVPQETLEIVKEKKLSPAGGIHAASHAIMNMLP 960
Query: 913 IYV--------RCNFSDLAPECPNP-------HDSRYFPERILLYDRH--PGGTGVS 952
+Y+ + ++L+ EC +P R P R++ YD P GTG+S
Sbjct: 961 VYINGASENGRQTADTELSTECKSPAKEFSTRQSRRVRPARLVFYDTKGGPSGTGLS 1017
>gi|448576254|ref|ZP_21642297.1| ATP-dependent helicase [Haloferax larsenii JCM 13917]
gi|445729934|gb|ELZ81528.1| ATP-dependent helicase [Haloferax larsenii JCM 13917]
Length = 791
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 248/776 (31%), Positives = 381/776 (49%), Gaps = 65/776 (8%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
+++E LR +GQ+ AR ++ L SAL GI +LY HQAE++
Sbjct: 3 DIIEWLRTRPYYEGQIRAHRQFEARDPTFADVD--LEPRLASALDDRGIDRLYRHQAEAV 60
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLE-ALSHDLSSSALYMFPTKALAQDQLRAL--L 321
A G NVV+AT T+SGKSL Y +P E A+ H LY+ P AL DQL L L
Sbjct: 61 DAVRDGDNVVLATRTASGKSLAYTVPAFERAMDH--GGRTLYLGPQNALVSDQLDTLSDL 118
Query: 322 AMTKAFDASIDIGVYDGDTTQKDRMWLRDN-ARLLITNPDMLHMSILPYHGQFSRILSNL 380
A F + + + Y G ++ ++ +R +L++NPDM+H ++LP+
Sbjct: 119 AHGLGFGSRVSVDQYTGRLSKSEKRDVRKRRPTVLLSNPDMVHYALLPH---------AH 169
Query: 381 RLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFV 440
RL + F + VVIDE H Y+G FG H AL+LRRL R+C +GSDP FV
Sbjct: 170 RLWEW---------FFSSLETVVIDEVHGYRGVFGSHVALLLRRLKRVCER-FGSDPQFV 219
Query: 441 FSTATSANPREHCMELANL--STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMD 498
+AT+ NP EH + + L+ D S + ++LWNP + +
Sbjct: 220 CCSATTGNPVEHAARITGEPEGSYTLVDGDASGTGETHWLLWNP----------PEYENP 269
Query: 499 DTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LV 557
D + + S+ + E LF ++V G + +AF R+R+ E S + L H
Sbjct: 270 DAGGSGRRRSAHV-ETKNLFVDLVSRGHQTLAFTRARQAAERYASESANDLRSRGEHGRA 328
Query: 558 DSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASL 617
+ Y+A + RR IE G + GV +TNALELG+DVG +DV L G+PG+ S
Sbjct: 329 GEVAAYQAALTHDRRREIESGLHDGDITGVWSTNALELGVDVGGLDVVLIDGYPGTRMSA 388
Query: 618 WQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVC 677
WQQAGR+GR +RP+L V V E LDQY MK+P + F+ E D +N +L H+ C
Sbjct: 389 WQQAGRAGRGDRPALVVLVGGEDQLDQYLMKHPGEFFEGDPERAVSDPENDHLLPSHVAC 448
Query: 678 AALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTIS 737
AA E+ LS DE+YFGS + ++TL++ G ++ + D + G P H +S
Sbjct: 449 AASENWLSTA-DEEYFGSSFPNVVSTLEDDGTVARRDTDDGVRWTHDGGG---SPQHAMS 504
Query: 738 IRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQ 797
+R I ++D ++NE + ++ A + GAVY HQG TY V +L+L +A Q
Sbjct: 505 LRTITDREIRLMDSRNNETIAKLAFEDALRDAHPGAVYHHQGQTYEVADLDLDRDVARLQ 564
Query: 798 KADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGS 857
Y+T+ D H++ + + +S + + T+ GF R
Sbjct: 565 PTWADYYTRV--LHDKHITVERDILSKPLSA--RSDVEVRFAEVTMRKQITGFERRDPKR 620
Query: 858 GIIFDTVELYLPKYSYESQAVWIQVPQSVKA---------------VVEQNFSFRSGLHA 902
G L LP+ S ++A++ VP V++ V +++F G+HA
Sbjct: 621 GTTIGQQLLDLPETSLRTKALYFTVPGDVESEMRELGGNSEEDGGLSVGSDYAFNGGIHA 680
Query: 903 ASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDM 958
A H ++ + P+ + C+ D+ P+ S I +YD HPGG G+++ D+
Sbjct: 681 AEHGMISLFPLTLLCDRGDIG-GLSTPYHSHTDQSTIFIYDGHPGGVGLTRAGYDI 735
>gi|395775646|ref|ZP_10456161.1| ATP-dependent RNA helicase [Streptomyces acidiscabies 84-104]
Length = 788
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 254/761 (33%), Positives = 387/761 (50%), Gaps = 59/761 (7%)
Query: 203 PLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAE 262
P ++ L G ++ H E + R P + +A++ GI ++HQA
Sbjct: 12 PQALLHSLAAGSDRASRITHTEHLPPRAGRHAVWPHRIRAEVVAAVREYGIEHPWAHQAL 71
Query: 263 SIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL------SHDLSSSALYMFPTKALAQDQ 316
+ +L G++V+VAT T+SGKSL Y +PVL AL + ++ALY+ PTKALA DQ
Sbjct: 72 AAEHALDGESVIVATGTASGKSLAYLVPVLSALLDGSEAPNGRGATALYLAPTKALAADQ 131
Query: 317 LRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRI 376
LR++ +++ ++ VYDGDT ++R W+R ++TNPDMLH ILP H ++S
Sbjct: 132 LRSVKELSQPLGTAVRPAVYDGDTPVEEREWVRQYGTYVLTNPDMLHRGILPSHPRWSSF 191
Query: 377 LSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSD 436
L +L+ +VV+DE H Y+G FG H A +LRRL RLC+ YGS
Sbjct: 192 LKSLK-------------------YVVVDECHTYRGVFGSHVAQVLRRLRRLCAR-YGSS 231
Query: 437 PSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTD 496
P F+ ++AT+A P L L +E + +D SP + +F LW P TD
Sbjct: 232 PVFLLASATAAEPAVTAGRLTGLPVVE-VADDASPRGELVFALWEP----------PLTD 280
Query: 497 MDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHL 556
+ + A + ++ I+E + L ++ G R +AF RSR+ EL+ +E L E L
Sbjct: 281 LHGEKGAPVRRTA-IAETADLLTDLAVQGARTVAFVRSRRGAELISVIAQERLSEVDRSL 339
Query: 557 VDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIAS 616
+ YR GY+ E+RR +E+ G+L G+AAT ALELG+DV +D L G+PG+ AS
Sbjct: 340 ARRVAAYRGGYLPEERRALEQALHSGELLGLAATTALELGVDVSGLDAVLIAGYPGTRAS 399
Query: 617 LWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLV 676
LWQQAGR+GR +LAV VA + PLD + + +PE LF P+E +D N VL HL
Sbjct: 400 LWQQAGRAGRGGEGALAVLVARDDPLDTFLVHHPEALFDQPVESTVLDPDNPYVLAPHLC 459
Query: 677 CAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTI 736
AA E PL+ D FG + + L+ L K + + E+ +
Sbjct: 460 AAASELPLTE-EDFSLFGPSVKDLLPQLEAARLLR------RRTKAWHWTRRERA-ADLA 511
Query: 737 SIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALC 796
IR ++++ + +L ++ A V+EGAV++HQG TYLV+ L+L AL
Sbjct: 512 DIRGEGGTPVQIVEAGTGRLLGTVDAGSAHTSVHEGAVHLHQGRTYLVRALDLDDSTALV 571
Query: 797 QKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRG 856
++A+ Y T RD T + A + ++ + T + VT F R
Sbjct: 572 EEANPPYSTIARDTTAV-------AVLSVDAEIPWGEGTLHYGSVEVTNQVVSFLRRRVL 624
Query: 857 SGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFS---FRSGLHAASHALLHVVPI 913
+G + +L LP + ++AVW V +S + N S LHAA HA + ++P+
Sbjct: 625 TGEVLGETKLDLPPRTLRTRAVWWTVTES--QLDHANISPEILGGALHAAEHASIGMLPL 682
Query: 914 YVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
+ C+ D+ H P + +YD HPGG G S++
Sbjct: 683 FATCDRWDIGGVSIPLHPDTLLPT-VFVYDGHPGGAGFSER 722
>gi|379752437|ref|YP_005341109.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium intracellulare MOTT-02]
gi|378802653|gb|AFC46788.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium intracellulare MOTT-02]
Length = 777
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 250/746 (33%), Positives = 375/746 (50%), Gaps = 68/746 (9%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
HV ++ R + P + A GI+ +SHQ + + AG++VVV+T T+S
Sbjct: 25 HVAELPPRSGRPHDWPAWAEPDVVKAFADRGIAAPWSHQFAAADLAYAGRHVVVSTGTAS 84
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIG------V 335
GKSL Y LPVL AL+ D + LY+ PTKAL DQLR A+T A + G
Sbjct: 85 GKSLAYQLPVLNALATDPRARVLYLSPTKALGHDQLRVAHALTAAIPRLHEPGFAVAPTA 144
Query: 336 YDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLI 395
YDGD+ + R + R+ +R L +NPDM+H+SIL H +++ +L LR
Sbjct: 145 YDGDSPAEVRRFARERSRWLFSNPDMIHLSILRNHARWAVLLRGLR-------------- 190
Query: 396 FLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCME 455
FVV+DE H Y+G FG + A++LRRL RLC+ Y S+P+ +F++AT+ +P E
Sbjct: 191 -----FVVVDECHYYRGVFGSNVAMVLRRLLRLCAR-YSSEPTVIFASATTDSPGATATE 244
Query: 456 LANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVS 515
L L E + DGSP + LW P LR+ L N A S +E +
Sbjct: 245 LIGLPVQE-VTKDGSPQGARTVALWEP--ALRTDLVGE--------NGAPVRRSAGAEAA 293
Query: 516 YLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRI 575
+ A+++ G + + F RSR+ EL + L++ AP L ++ YRAGY+AEDR +
Sbjct: 294 RVMADLIAEGAQTLTFVRSRRAAELTALGAQARLDDIAPELSRTVASYRAGYLAEDRTAL 353
Query: 576 ERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVY 635
ER G+L G+A TNALELG+D+ +D + GFPG++AS WQQAGRSGRR + +L V
Sbjct: 354 ERALAEGRLRGLATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVL 413
Query: 636 VAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGS 695
+A + PLD Y + P L P+E ID N +L L+CAA E PL + +
Sbjct: 414 IARDDPLDTYLVHNPAALLDKPVERVVIDPTNPYILGPQLLCAATELPLGEAEVRELGAT 473
Query: 696 GLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNE 755
++ G L + G L S K F G E P + IR + +++ +
Sbjct: 474 DVADG---LVDDGLLRR-----RSGKYFPAPGLE--PHAAVDIRGSTGGQIVIVEADTGR 523
Query: 756 VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHV 815
+L + +A V+ GAVY+HQG +Y+V L+ IA D Y T R+ TDI V
Sbjct: 524 LLGSTDVGRAPASVHPGAVYLHQGESYVVDSLDTEEGIAFVHAEDPGYATFAREITDIVV 583
Query: 816 SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYES 875
+G A T + VT G+ R SG + D +EL +P+++ +
Sbjct: 584 TGTGERLA-------FGPVTLGLVPVRVTHRVVGYLRRLL-SGEVIDFIELDMPEHTLAT 635
Query: 876 QAVWIQVPQSVKAVVEQNFS---FRSGLHAASHALLHVVPIYVRCNFSDLA----PECPN 928
+V + + A++ + LHAA HA + ++P+ C+ D+ P
Sbjct: 636 TSVMYTITE--DALLRKGIDGTRIPGSLHAAEHAAIGLLPLVASCDRGDIGGLSTAVGPG 693
Query: 929 PHDSRYFPERILLYDRHPGGTGVSKQ 954
P P + +YD +PGG G +++
Sbjct: 694 PDG---LPS-VFVYDGYPGGAGFAER 715
>gi|403383154|ref|ZP_10925211.1| ATP-dependent helicase yprA [Kurthia sp. JC30]
Length = 752
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 249/758 (32%), Positives = 390/758 (51%), Gaps = 85/758 (11%)
Query: 216 SQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVV 275
++ Q+ HVE + A K ++P L + +AL + GI+KLYSHQAE+ ++ G++
Sbjct: 16 AKHQIEHVETLEATKGDYRDLPTDLAPSLVAALANRGITKLYSHQAEAYEYAMRGQSFTA 75
Query: 276 ATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGV 335
T T+SGKSLCY+LPVL+ + + +S ALY+FPTKALAQDQ A+ + + A I
Sbjct: 76 ITPTASGKSLCYHLPVLQTILRNPNSRALYLFPTKALAQDQKNAVNDLIEDIGADILSYT 135
Query: 336 YDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLI 395
YDGDT R +R +++TNPDMLH ILP+H ++ + NL
Sbjct: 136 YDGDTAPGIRTKVRKAGHIVMTNPDMLHSGILPHHTKWVSLFENL--------------- 180
Query: 396 FLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCME 455
++VIDE H YKG FG H A +LRRL R+C YGS+P+F+ ++AT NP++
Sbjct: 181 ----DYIVIDELHTYKGVFGSHVAHVLRRLKRICD-FYGSNPTFICTSATIKNPQQLAQN 235
Query: 456 LANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVS 515
L N LI G+P +K FV +NP + R +A + EV
Sbjct: 236 LTN-EPHALITKSGAPTGKKTFVFYNPPIVHPTF---------GVRRSA------VLEVK 279
Query: 516 YLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVD-SICVYRAGYVAEDRRR 574
+ ++ + G++ I F +SR E++++Y + + TA + D SI YR GY+ +RR
Sbjct: 280 DIAKDLYKAGIQTIIFAKSRVRVEMLVTYLKSL---TAKKIHDESIRGYRGGYLPSERRA 336
Query: 575 IERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAV 634
IE+ G + V +TNALELG+D+G + + G+PG+IAS WQQAGR+GRR+ +L +
Sbjct: 337 IEKGLRNGDIQTVVSTNALELGVDIGQLQACIMTGYPGNIASAWQQAGRAGRRQEEALVI 396
Query: 635 YVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFG 694
YV LDQY +K+P LF S E I N +L HL CAA E P F
Sbjct: 397 YVGQSTALDQYILKHPHYLFNSTPEEARIFPDNMLILMDHLKCAAFELP---------FK 447
Query: 695 SGLSSG---ITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDM 751
G S G +T N Y + L ++ + ++ + P+H IS+R+ E +ID
Sbjct: 448 VGDSYGEFEVTDFLN--YFVDEQVLLKTSNTWHWMA-DSFPAHDISLRSASQENVVIIDQ 504
Query: 752 Q---SNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTR 808
V+ E++ A ++E A+Y+HQG + V++L+ K A ++ D+ YFT
Sbjct: 505 SVPTKTHVIGEMDRYSAMTLLHEEAIYLHQGTQFQVEKLDWEEKKAYVREVDVDYFTDAN 564
Query: 809 DYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWR----GSGIIFDTV 864
++ V + + D +T + T T F R GSG I
Sbjct: 565 LAVELKVISEDKTR----TFDGMTVDYGDVMTL-ATATIFKKIRFNTHDNIGSGPI---- 615
Query: 865 ELYLPKYSYESQAVWI--QVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSD- 921
LP + + W+ + P + + E + S + + ++A+ +P+Y++ + SD
Sbjct: 616 --TLPPEELHTSSTWLSFEPPANWR---EDDLS--AAMTGVAYAMNSFIPLYIQSDRSDV 668
Query: 922 -LAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDM 958
+ P+ H+ + +YDR+PGG G+S++V D+
Sbjct: 669 HVVPQVKAVHNGK---PTFFVYDRYPGGIGLSERVYDL 703
>gi|119961306|ref|YP_949037.1| ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
gi|403528510|ref|YP_006663397.1| ATP-dependent helicase YprA [Arthrobacter sp. Rue61a]
gi|119948165|gb|ABM07076.1| putative ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
gi|403230937|gb|AFR30359.1| putative ATP-dependent helicase YprA [Arthrobacter sp. Rue61a]
Length = 780
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 241/756 (31%), Positives = 380/756 (50%), Gaps = 72/756 (9%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATM 278
Q+ HV I ARKAV PD + + +A + GI + Y HQ ++ + +G++VV+AT
Sbjct: 19 QLRHVHTIPARKAVNEPWPDWVHPDVVAAYGTLGIHQPYRHQIQAADLAHSGQHVVIATG 78
Query: 279 TSSGKSLCYNLPVLEALS-------------HDLSSSALYMFPTKALAQDQLRALLAMTK 325
T+SGKSL Y LP L+A+ HD + LY+ PTKALA DQL A+ ++
Sbjct: 79 TASGKSLAYQLPALDAIHRSELRVLSDPGKIHDDGAVTLYLSPTKALAADQLAAIRSLKL 138
Query: 326 AFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAF 385
++ YDGDT R W+RD+A ++ NPDMLH ILP H ++R
Sbjct: 139 P---TVRAETYDGDTDVSSRRWIRDHANFILANPDMLHFGILPNHTWWARF--------- 186
Query: 386 SLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGS-----DPSFV 440
F +R+V++DEAH+Y+G FG H A ++RRL R+C++ YG+ +P F+
Sbjct: 187 ----------FRRLRYVIVDEAHSYRGVFGSHVANLMRRLRRICAY-YGAGTSFPEPVFI 235
Query: 441 FSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDT 500
++AT+++P L E + D SP W P + TD+
Sbjct: 236 AASATASDPGVSFGRLIGAPVRE-VSEDCSPHGSTTVAFWEP----------ALTDVKG- 283
Query: 501 RNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSI 560
N A + + ++E + + A +V +R IAF +SR+ E + S T+ +L+E P L +
Sbjct: 284 ENGAKQRRTAVAETADILANLVSSRVRTIAFIKSRRGAESIASITKRLLDEVDPSLPGRV 343
Query: 561 CVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQ 620
YR+GY+ E+RR +E+ G+L GV++T+ALELGID+ +D L G+PG+ ASL+QQ
Sbjct: 344 AAYRSGYLPEERRALEQALRSGQLLGVSSTSALELGIDISGLDAVLVAGWPGTRASLFQQ 403
Query: 621 AGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAAL 680
GR+GR + ++A +VA + PLD Y + +PE +F +E D N VL HL AA
Sbjct: 404 IGRAGRAGQDAIAAFVASDDPLDTYLVNHPEAIFDVSVEATVFDPGNPYVLGPHLCAAAA 463
Query: 681 EHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRA 740
E P+ + FG + L +GYL P+ + H + + +++RA
Sbjct: 464 ELPIGPA-ELDLFGPTAEGLLDRLVVQGYLRKRPA-------GWFWTHPESAAGMVNLRA 515
Query: 741 IESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKAD 800
++D ++ +L ++ + +Q + GA+Y+HQG +YLV++LN + + ++ +
Sbjct: 516 DGGGPVSIVDAETGSLLGTMDSPQTHYQAHTGAIYVHQGDSYLVEDLNEADHCVMVRRVN 575
Query: 801 LKYFTKTRDYTDIHVSGGNNAYATKISKD-QLTKTTAQALACTVTTTWFGFYRLWRGSGI 859
++T RD T I V + S+ Q T VTT F R S
Sbjct: 576 PDFYTTARDVTQIEV--------LETSRSVQWGDITVHFGDVKVTTQVVSFQRKALISNE 627
Query: 860 IFDTVELYLPKYSYESQAVWIQVP-QSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCN 918
I L L ++AVW V +S+ F LHAA HA + ++P+ +
Sbjct: 628 ILGEEPLDLGARDLFTKAVWFVVDNRSLHGAGLVEAEFPGALHAAEHAAIGLLPLVASSD 687
Query: 919 FSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
D+ H P I +YD HPGG G +++
Sbjct: 688 RWDIGGVSTALHADTGVPT-IFVYDGHPGGAGFAER 722
>gi|88603966|ref|YP_504144.1| DEAD/DEAH box helicase-like protein [Methanospirillum hungatei
JF-1]
gi|88189428|gb|ABD42425.1| DEAD/DEAH box helicase-like protein [Methanospirillum hungatei
JF-1]
Length = 751
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 239/739 (32%), Positives = 381/739 (51%), Gaps = 68/739 (9%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+ H++ I + A P L K L+ I+ LYSHQAE+I A AG++V++ T T
Sbjct: 20 IAHIQRIPGKDAARSPAPVVLPARVKDWLEKEKIT-LYSHQAEAIEAIAAGEDVILCTPT 78
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGD 339
+SGK+L + LP L ++AL ++P KAL +DQ + + + KA I +YDGD
Sbjct: 79 ASGKTLSFLLPFLTIRQEVRDATALAIYPAKALTRDQQKTMQELEKATGMPIQPAIYDGD 138
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T Q DR +R A L++TNP LH ILP+H Q+S S LR
Sbjct: 139 TPQHDRPLIRSQAGLILTNPYELH-QILPWHRQWSSFFSRLR------------------ 179
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
++++DEAH Y+G FG ++++RRL R+C H YGS P F S+AT ANP + L
Sbjct: 180 -YIILDEAHQYRGVFGSSMSVLIRRLLRICDH-YGSSPQFFLSSATLANPADFARNLTG- 236
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
+ +I G+P + F+L+NP +M R S SE + + +
Sbjct: 237 REMTIIDRSGAPTGDRFFILYNPYQ-----------EMVQPR-------SVYSESAEILS 278
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDF 579
+V+ GL+ + F SR++ ELV + + L + +P V+SI YRAGY+ ++R+ +ER+
Sbjct: 279 LLVEAGLQSLCFTGSRRMTELVSVWAKNHLHKKSPDKVNSIAAYRAGYLPKERQELERNL 338
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFE 639
G + G+ +TNALELGID+G +D + G+PG++ S+WQQAGR+GR +LA+ +A +
Sbjct: 339 KAGVMRGIVSTNALELGIDIGSLDAVVMTGYPGTMMSVWQQAGRAGRSVSDALAILIAMQ 398
Query: 640 GPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSS 699
PLDQ+FM++PE+ F P E ID +N +L L+CAA E P+ + D ++FG G+
Sbjct: 399 NPLDQFFMRHPEEFFARPHEHAIIDTKNPYILSGQLLCAASELPVRPVSDIRWFGKGIID 458
Query: 700 GITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEE 759
+ L G ++ P + + Y G K S +S+ I SE + V N V+E
Sbjct: 459 HLNALGENGLVAETP------RGYVYTG-RKRASELVSLSQI-SEVWTV--EVRNRVIET 508
Query: 760 IEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGN 819
++ +A + + GAV +HQG YLV + L + D Y+T+ N
Sbjct: 509 LDIRQACREAHPGAVLIHQGERYLVGSWDFGRHRILATQEDPGYYTRV-----------N 557
Query: 820 NAYATKISKDQLTKTTAQALAC----TVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYES 875
+ + +I + +++ C V+ + G+ RL I T L L ++E+
Sbjct: 558 HQTSVQIREQLMSREIRSGTLCLGRVEVSELYHGYRRLIDERTI--STELLSLEPITFET 615
Query: 876 QAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYF 935
+VWI+ ++ + LH A HAL+ ++P +V C+ DL
Sbjct: 616 ISVWIEFSLEGMRILSADRDVGGSLHGAEHALIAMMPYHVLCDRWDLGGLSSASSGEVRG 675
Query: 936 PERILLYDRHPGGTGVSKQ 954
I +YD + GG G++++
Sbjct: 676 KPVIFIYDGYEGGIGLAER 694
>gi|392955812|ref|ZP_10321342.1| dead/deah box helicase domain-containing protein [Bacillus
macauensis ZFHKF-1]
gi|391878054|gb|EIT86644.1| dead/deah box helicase domain-containing protein [Bacillus
macauensis ZFHKF-1]
Length = 749
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 244/750 (32%), Positives = 381/750 (50%), Gaps = 82/750 (10%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
++H +I A++A P L +ALK GI LYSHQ + + G+++V T T
Sbjct: 20 IIHWHEIGAQQAKTKPFPATLDTRIAAALKKRGIHALYSHQHTAYESVQNGRHIVAVTPT 79
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGD 339
+SGK+LCY LPVL+A++ + ALY+FPTKALAQDQ + + + I YDGD
Sbjct: 80 ASGKTLCYTLPVLQAIAEQEENRALYLFPTKALAQDQKSEINELIAEMEMEIKSYTYDGD 139
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T+ R +R ++ITNPDMLH +ILP+H ++ + NL
Sbjct: 140 TSPAIRQVVRQAGHIVITNPDMLHSAILPHHTKWVSLFENL------------------- 180
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
++VVIDE H Y+G FG H A ++RRL R+C+ YGS P F+ ++AT ANP+E +L
Sbjct: 181 KYVVIDELHTYRGVFGSHVANVIRRLKRICA-FYGSSPQFICTSATIANPKELAQQLTGH 239
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
S + LI ++G+P K F +NP V+N+ N S +EV+ L
Sbjct: 240 S-MTLIDDNGAPRGVKHFAFYNP-----PVVNQP----------LNIRKSATAEVNALAK 283
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICV--YRAGYVAEDRRRIER 577
+++ ++ I F RSR EL+LS+ L+E + + S + YR GY+ + RR IER
Sbjct: 284 MFLKNDIQTIVFARSRVRVELILSH----LQELTKNDIQSTAIRGYRGGYLPKQRREIER 339
Query: 578 DFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVA 637
G++ GV +TNALELG+D+G + V + G+PGS+AS WQQAGR+GRR+ SL + VA
Sbjct: 340 GLRAGEIKGVVSTNALELGVDIGQLQVCVMTGYPGSVASTWQQAGRAGRRQEESLILMVA 399
Query: 638 FEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGL 697
PLDQY + +PE F+ E I+ +N + HL CAA E P ++ FGS
Sbjct: 400 SSTPLDQYVVAHPEYFFERSPEFARINPENIIIFVDHLKCAAYELPFKA---DETFGSVD 456
Query: 698 SSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN--- 754
+ I +L + L + + G + P+ IS+R+ E +ID
Sbjct: 457 VNDILE-----FLREERILHVHKDTYHW-GSQVFPAANISLRSASQENVVIIDTSDKANV 510
Query: 755 EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIH 814
++ E++ A +++ A+Y+H+G Y V++L+ A ++ +++Y+T +H
Sbjct: 511 HIIGEMDRFSAMTLLHDEAIYLHEGTQYQVEKLDWDHCKAYVKEVEVEYYTDANLAVQLH 570
Query: 815 VSGGNNAYATKISKDQLTKTTAQA-----LACTVTTTWFGFYRLWR----GSGIIFDTVE 865
V + D+ T+ + +A + + F +L GSG I
Sbjct: 571 V----------LEVDETTQRANSSVHFGDVAIHILPSIFKKIKLSTFENIGSGPI----- 615
Query: 866 LYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPE 925
LP+ + A W+ + + E+ + L +H L HVVP++V C+ D+
Sbjct: 616 -ALPEEELHTNACWLALTNVDPTLAEK--TLEQLLLGVAHVLQHVVPVHVMCDVRDIHVV 672
Query: 926 CPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
P I LYD +PGG G++ V
Sbjct: 673 SQIKATHSGLP-TIFLYDHYPGGIGLAHDV 701
>gi|300790603|ref|YP_003770894.1| DEAD/DEAH box helicase [Amycolatopsis mediterranei U32]
gi|399542481|ref|YP_006555143.1| DEAD/DEAH box helicase-like protein [Amycolatopsis mediterranei
S699]
gi|299800117|gb|ADJ50492.1| DEAD/DEAH box helicase-like protein [Amycolatopsis mediterranei
U32]
gi|398323251|gb|AFO82198.1| DEAD/DEAH box helicase-like protein [Amycolatopsis mediterranei
S699]
Length = 854
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 231/663 (34%), Positives = 344/663 (51%), Gaps = 49/663 (7%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+ HV D+ R A E P + +AL+ G+S ++HQAE+ + G++VV++T T
Sbjct: 12 VTHVADLPGRAARYAEWPSWVDPAVIAALRDCGVSAPWAHQAEAASHAYEGRHVVISTGT 71
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGD 339
+SGKSL Y LPVL L+ ++ALY+ PTKAL DQLR++ ++ + +DGD
Sbjct: 72 ASGKSLAYQLPVLSRLAAGEKANALYLSPTKALGADQLRSVSSLDVP---GVRAASFDGD 128
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T +R W+R +A + TNPDMLH IL HG+++ F +
Sbjct: 129 TPMAERDWVRAHANWVFTNPDMLHRGILSAHGRWA-------------------TFFRRL 169
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
VV+DE H+Y+G FG H AL+LRRL R+ H YG+ P FV ++AT+A+P L +
Sbjct: 170 SCVVVDECHSYRGVFGSHVALLLRRLRRVAEH-YGASPVFVLASATTASPASFASRLTGV 228
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
+ + +D SP + LW P L + + N A S +E S + A
Sbjct: 229 PCVA-VTDDASPRGARTVALWEP-PLLEELTGE---------NGAPVRRSAGAETSRILA 277
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDF 579
++V G R +AF RSR+ EL R IL E P L +++ YR+GY+ E+RR +E
Sbjct: 278 DLVLEGARSLAFIRSRRGAELAALGARRILSEVDPALSETVAAYRSGYLPEERRALESAL 337
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFE 639
G+L GVA TNALELG+D+ +D + G+PG++AS WQQAGR+GR +L V+VA +
Sbjct: 338 LAGRLLGVATTNALELGVDIAGLDAVVLAGYPGTLASFWQQAGRAGRSGDSALVVFVARD 397
Query: 640 GPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSS 699
PLD Y + +P L P+E +D N VL L CAA E PL+L E + G+
Sbjct: 398 DPLDTYLVHHPAALLSRPVETAVLDPANPYVLAPQLACAAAELPLTLPELEVFGGAAAQE 457
Query: 700 GITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEE 759
+ L + + S Y P + IR E+ V++ S+ +L
Sbjct: 458 VLAELAEQKLVRRRSS-------GWYWTSRDRPHAEVGIRGTGGEQIAVVESDSSRMLGT 510
Query: 760 IEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGN 819
++ A F V+ GAVY+HQG +Y+V EL+L + +AL + + T R+ DI V
Sbjct: 511 VDPGSACFAVHPGAVYLHQGSSYVVDELDLETGLALVHAENPDWTTTPREIVDISV---- 566
Query: 820 NAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVW 879
+T+ +D + VT+ G+ R R SG + D L LP+ S ++AVW
Sbjct: 567 --LSTQEKRD-FGGVSVCLGEVAVTSQVVGYLRR-RPSGEVLDHTPLDLPEQSLRTRAVW 622
Query: 880 IQV 882
V
Sbjct: 623 YTV 625
>gi|317121893|ref|YP_004101896.1| DEAD/DEAH box helicase [Thermaerobacter marianensis DSM 12885]
gi|315591873|gb|ADU51169.1| DEAD/DEAH box helicase domain protein [Thermaerobacter marianensis
DSM 12885]
Length = 795
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 242/738 (32%), Positives = 371/738 (50%), Gaps = 70/738 (9%)
Query: 227 SARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLC 286
AR P L + L GI +LYSHQAE++ ASLAG++VVV T T+SGK+LC
Sbjct: 29 PARAGRYAPPPPGLDPRLVAWLNGRGIRQLYSHQAEAVAASLAGEDVVVVTPTASGKTLC 88
Query: 287 YNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRM 346
Y LPVL+ + S+ AL++FPTKALAQDQ AL + YDGDT + R
Sbjct: 89 YTLPVLQRMLERPSARALFLFPTKALAQDQYAALQQAIDQLGLDLKAYTYDGDTPEAARR 148
Query: 347 WLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDE 406
+R +++ITNPDMLH ILPYH ++ + NL +VV+DE
Sbjct: 149 AIRAAGQVVITNPDMLHAGILPYHTRWVNLFENL-------------------EYVVVDE 189
Query: 407 AHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQ 466
H Y+G FG H A +LRRL R+C+ YGS P + +AT NP +H L + +I
Sbjct: 190 LHHYRGVFGSHVANVLRRLFRICA-FYGSRPRIIACSATIGNPVDHATRLLG-RPVRVID 247
Query: 467 NDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGL 526
G+P ++ +++NP + + L + + +TR A + +++G+
Sbjct: 248 ESGAPRGERHLIVYNP-PVVNAQLGIRRGVLQETRRWAER--------------FLKNGI 292
Query: 527 RCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCG 586
I F R+R E++L+Y R + E A H V YR GY+ RR IER G++ G
Sbjct: 293 PTIVFARTRLAVEVLLTYLRHAMGEQA-HRVRG---YRGGYLPNQRREIERGLRSGEVLG 348
Query: 587 VAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYF 646
V ATNALELGID+G + + G+PGS+AS WQQAGR+GRR + AV VA PLDQY
Sbjct: 349 VVATNALELGIDIGSLQAAVLAGYPGSVASFWQQAGRAGRRHGGAAAVLVASSSPLDQYI 408
Query: 647 MKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKN 706
++P L + P+E I N +L H+ CAA E P E++ + +T L+
Sbjct: 409 ARHPRFLLEQPVEAAFIHPDNLYILVSHIQCAAFELPFRA--GERFGDQPVDDVLTFLEE 466
Query: 707 RGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDM-QSNEVLEEIEESKA 765
+G + S + +I + P+H IS+R+ E +ID + V+ E++ A
Sbjct: 467 QGLVH------RSGDRWHWI-SDTFPAHEISLRSAAEENVVIIDTSRGARVIGEVDRFSA 519
Query: 766 FFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATK 825
V+E A+Y+H+G Y V+ L+ A + + Y+T D+ V + +A +
Sbjct: 520 PLLVHEQAIYIHEGQQYQVERLDFEENKAYVRPVRVDYYTDAHLAVDLKVL---DCFARR 576
Query: 826 ISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQV--- 882
+ +A T F +L+ + + + +LP+ + A W+ +
Sbjct: 577 PVPG--GEAARGEVAVIARATLFKKIKLFTHENVGWGRI--HLPELEMHTTACWVALGDE 632
Query: 883 PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLA--PECPNPHDSRYFPERIL 940
P + V Q +GL ++ L H+ P+Y+ C+ DL + +P R +
Sbjct: 633 PAGMDPSVLQ-----AGLQGLAYLLGHLAPLYLLCDPRDLGTVAQLRSPFTGR---PTLF 684
Query: 941 LYDRHPGGTGVSKQVTDM 958
LYD +PGG G++ + D+
Sbjct: 685 LYDAYPGGVGLADKAYDI 702
>gi|404443449|ref|ZP_11008619.1| DEAD/DEAH box helicase [Mycobacterium vaccae ATCC 25954]
gi|403655552|gb|EJZ10404.1| DEAD/DEAH box helicase [Mycobacterium vaccae ATCC 25954]
Length = 782
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 250/748 (33%), Positives = 379/748 (50%), Gaps = 71/748 (9%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
HV D++ R+A P + A G+ ++SHQ + + G++VV++T T+S
Sbjct: 29 HVADLAPRRARPQAWPGWADPDVVRAFHDRGVEAMWSHQLAAAELARNGRHVVLSTGTAS 88
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGV--YDGD 339
GKSL Y LP+L AL + S ALY+ PTKAL DQLR+ A+T A D+ YDGD
Sbjct: 89 GKSLGYQLPILTALKENPRSRALYLSPTKALGHDQLRSAAALTMAIPGLADVAPSPYDGD 148
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
+ + R + R+ +R + +NPDM+H+S+L H +++ L +L+
Sbjct: 149 SPTEVRRFARERSRWIFSNPDMIHLSLLRNHARWAVFLRHLQ------------------ 190
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYG-----SDPSFVFSTATSANPREHCM 454
+VV+DE H Y+G FG + A++LRRL RLC+ S P+ +F++AT+A+P
Sbjct: 191 -YVVVDECHYYRGIFGSNVAMVLRRLLRLCARYAAPGSAFSGPTVIFASATTASPAATAS 249
Query: 455 ELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEV 514
EL + E+ + DGSP + LW P + + ++ + N A S +E
Sbjct: 250 ELIGQTVAEVTE-DGSPQGARTVALWEP-ALMADLVGE---------NGAPVRRSAGAEA 298
Query: 515 SYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRR 574
+ + A+++ G R + F RSR+ EL R L +TAP L + YRAGY+AEDRR
Sbjct: 299 ARVMADLITEGARTLTFVRSRRGAELTALGARARLTDTAPELAPRVASYRAGYLAEDRRE 358
Query: 575 IERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAV 634
+ER G+L GVA TNALELG+D+ +D + GFPG++AS WQQAGR+GRR + +L V
Sbjct: 359 LERALAEGELLGVATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRAGRRGQGALIV 418
Query: 635 YVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLS-----LIYD 689
+A + PLD Y + +P L PIE ID N VL L+CAA E PL+ +
Sbjct: 419 LIARDDPLDTYLVHHPSALLDKPIERVVIDPGNPYVLGPQLLCAATELPLTEAEVRMWGA 478
Query: 690 EKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVI 749
E S + G+ + GY + P LD P + IR + ++
Sbjct: 479 ETVAESLVDDGLLRRRPSGYFPA-PGLD--------------PHPAVDIRGAIGGQIAIL 523
Query: 750 DMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRD 809
+ + +L +A V+ GAVY+HQG +Y+V L+ +A D Y T R+
Sbjct: 524 EAGTGRMLGSTGAGQAPASVHPGAVYLHQGESYVVDSLDFEDGVAFVHAEDPGYTTFARE 583
Query: 810 YTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLP 869
TDI V+G + + T + +V+ T G+ R R G + D VEL +P
Sbjct: 584 LTDISVTGPGE-------RTEHGPVTVGLVPVSVSNTVTGYLRRRR-DGEVIDFVELDMP 635
Query: 870 KYSYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLA--PEC 926
S E+ AV + P++++ LHAA HA + ++P+ C+ D+
Sbjct: 636 TRSLETMAVMCTITPEALQDNGIDPLRTPGSLHAAEHAAIGLLPLVASCDRGDIGGVSTA 695
Query: 927 PNPHDSRYFPERILLYDRHPGGTGVSKQ 954
P D P I +YD HPGG G + +
Sbjct: 696 VGPVDG--LPS-IFVYDGHPGGAGFAAR 720
>gi|302559336|ref|ZP_07311678.1| ATP-dependent RNA helicase [Streptomyces griseoflavus Tu4000]
gi|302476954|gb|EFL40047.1| ATP-dependent RNA helicase [Streptomyces griseoflavus Tu4000]
Length = 811
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 255/773 (32%), Positives = 385/773 (49%), Gaps = 70/773 (9%)
Query: 198 KSQLLPLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLY 257
S+ P +++ L G G ++ H E + R+ PD + +A+++ GI +
Sbjct: 42 PSRPAPDAVLDRLASGPGRASRITHTEHLPPREGRHAVWPDRIRPEILAAVRAAGIEHPW 101
Query: 258 SHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL------SHDLSSSALYMFPTKA 311
+HQA + +L G++VVV+T T+SGKSL Y +PVL AL + ++ALY+ PTKA
Sbjct: 102 AHQARAAEHALDGESVVVSTGTASGKSLAYLMPVLSALLDGAQAPNGRGATALYLAPTKA 161
Query: 312 LAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHG 371
LA DQ R++ +++ S+ V+DGDT ++R W+R A ++TNPDMLH SILP H
Sbjct: 162 LAADQCRSVKELSQPLGHSVRAAVHDGDTPFEEREWIRQYANYVLTNPDMLHRSILPSHP 221
Query: 372 QFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSH 431
++S L +L+ +VV+DE H Y+G FG H A +LRRL RLC+
Sbjct: 222 RWSSFLKSLK-------------------YVVVDECHTYRGVFGSHVAQVLRRLRRLCAR 262
Query: 432 VYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLN 491
YG+ P F+ ++AT+A P L L +E + +D SP + +F LW P
Sbjct: 263 -YGASPVFLLASATAAEPAVAARRLTGLPVVE-VADDASPRGELVFALWEP--------- 311
Query: 492 KSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEE 551
T++ + A + ++ +E + L ++ G+R + F RSR+ EL+ ++ L E
Sbjct: 312 -PLTELHGEKGAPVRRTA-TAEAADLLTDLTVQGIRSVTFVRSRRGAELISVIAQDRLAE 369
Query: 552 TAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFP 611
L + YR GY+ E+RR +ER G+L G+AATNALELG+DV +D + G+P
Sbjct: 370 VDRSLARRVAAYRGGYLPEERRALERALHSGELLGLAATNALELGMDVSGLDAVVIAGYP 429
Query: 612 GSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVL 671
G+ ASLWQQAGR+GR + +LAV VA + PLD + + +PE LF P+E +D N VL
Sbjct: 430 GTRASLWQQAGRAGRSGQGALAVLVARDDPLDTFLVHHPEALFDRPVESTVLDPDNPYVL 489
Query: 672 EQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLK--------NRGYLSSDPSLDSSAKIF 723
HL AA E PL+ D FG + L+ + G P
Sbjct: 490 APHLCAAAEELPLT-DEDLALFGPATGELLPQLEAAKLLRQPDEGLALDPPGAGRRPGRH 548
Query: 724 EYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYL 783
G P +RA S R A V+EGAV++HQG TYL
Sbjct: 549 PRGGRPAGPDKKRPVRAGCSARKNA--------------GAAHTGVHEGAVHLHQGLTYL 594
Query: 784 VKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTV 843
V+ L+L +AL ++A+ Y T RD T I V + +L + + V
Sbjct: 595 VRSLDLEDSVALVERANPTYTTVARDTTSISVLETDTEI--PWGDGRLCYGSVE-----V 647
Query: 844 TTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSG-LHA 902
T F R +G + +L LP + ++AVW V + N G LHA
Sbjct: 648 TNQVVSFLRRRVITGEVLGETKLDLPPRTLRTRAVWWTVTEDQLDRARINPEILGGALHA 707
Query: 903 ASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
A HA + ++P++ C+ D+ H P + +YD HPGG G +++
Sbjct: 708 AEHASIGMLPLFATCDRWDIGGVSVPLHPDTLLPT-VFVYDGHPGGAGFAERA 759
>gi|68481993|ref|XP_715014.1| hypothetical protein CaO19.7213 [Candida albicans SC5314]
gi|46436616|gb|EAK95975.1| hypothetical protein CaO19.7213 [Candida albicans SC5314]
Length = 1123
Score = 378 bits (970), Expect = e-101, Method: Compositional matrix adjust.
Identities = 260/777 (33%), Positives = 398/777 (51%), Gaps = 99/777 (12%)
Query: 235 EIPDALLDNTKSALKSTGISKLYSHQA---ESIMASLAGKNVVVATMTSSGKSLCYNLPV 291
++ DALL TK+ G LYSHQA E+++ +V+V+T T+SGKSL Y +PV
Sbjct: 281 DLKDALL-KTKNICLEDG---LYSHQAGALETLLNPANKSHVIVSTSTASGKSLIYQIPV 336
Query: 292 LEALSHDLSS-------SALYMFPTKALAQDQLRALLAMTKAFDAS----IDIGVYDGDT 340
L ++ D+SS +A ++FPTKALAQDQ+R K + I + YDGDT
Sbjct: 337 LNSILWDISSGLKGRHTTAFFIFPTKALAQDQIRHFREFLKNLPTASSRPIIVNTYDGDT 396
Query: 341 TQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIR 400
K+R + + ++ TNPD +H SILP H +N + +L +
Sbjct: 397 PFKERDKISKESDIIFTNPDTIHASILPNHS-----FNNWKEFLGAL------------K 439
Query: 401 FVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDP-SFVFSTATSANPREHCMELANL 459
FVV+DE H YKG FG + ++ RL R+ + + D ++ +AT NP H + +L
Sbjct: 440 FVVMDELHVYKGTFGVNVGFVMGRLSRMKNLLSRDDSIQYISCSATIHNPVSHFRTVCSL 499
Query: 460 STLELI---QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSY 516
ELI DGSPC +K ++WNP + K +DT + ISE +
Sbjct: 500 PENELIVHVDQDGSPCCEKKLIVWNPPPLMNQRGQK-----EDTVDKYVPRVGMISESAK 554
Query: 517 LFAEMV--QHGLRCIAFCRSRKLCELVLSYTREILEETAPH---LVDSICVYRAGYVAED 571
L +V L+ I FC R +CE+++ R +L+ + + I YR GY D
Sbjct: 555 LLVNLVTANDSLKIIVFCPIRVVCEMLMKEVRHLLQNSFKNSGITQSDIMAYRGGYSKSD 614
Query: 572 RRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERP- 630
RR IE+ F G+L + ATNALELGID+ H+DV + GFP S ++L QQ GR+GRR+
Sbjct: 615 RRIIEQKMFSGQLRAIVATNALELGIDLSHLDVVITCGFPMSKSNLHQQFGRAGRRKNAN 674
Query: 631 -SLAVYVAFEGPLDQYFMKYPEKLFKSPIE-CCHIDAQNHK----VLEQHLVCAALEHPL 684
SLA++V + P+DQY+++ P +L + E C ++ + +LE+HL CAA E P+
Sbjct: 675 GSLAIFVPGKNPIDQYYLENPHELLGNDYEDLCVSGVRDMECGKMILERHLQCAAYEEPI 734
Query: 685 SLIYDEKYFGSGLSSGI--TTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIE 742
L D K+ G S LK L D ++ K + P +SIRA+E
Sbjct: 735 EL-DDIKWLMPGGSKKDFEDVLKTNLILDIDGKFKTNPKYY------PKPHKVVSIRAVE 787
Query: 743 SERYEVIDMQSNE--VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKAD 800
+ V+D+ +N ++EEIE S+ F +YEG +++HQG YLVKE N A ++ +
Sbjct: 788 EPAFAVVDITNNRNIIIEEIEFSRTTFTLYEGGIFLHQGQPYLVKEFNDKEFYAKVERVN 847
Query: 801 LKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTV-------TTTWFGFYRL 853
+ + T RDYTD+ + + K +AL V T FGF+++
Sbjct: 848 VDWTTSQRDYTDV------DPEEVEFVKPLYPIDAPKALDIPVFSGKVKITMKVFGFFKV 901
Query: 854 WRGSGIIFDTVELYLPKYSYESQAVWIQVPQ-SVKAVVEQNFSFRSGLHAASHALLHVVP 912
R I+ + VE+ P S+ W+ VPQ +++ V E+ S G+HAASHA+++++P
Sbjct: 902 NRREEIL-EVVEVKNPPVIAFSKGFWLNVPQETLEIVKEKKLSPAGGIHAASHAIMNMLP 960
Query: 913 IYV--------RCNFSDLAPECPNP-------HDSRYFPERILLYDRH--PGGTGVS 952
+Y+ + ++L+ EC +P R P R++ YD P GTG+S
Sbjct: 961 VYINGASENGRQTADTELSTECKSPAKEFSTRQSHRVRPARLVFYDTKGGPSGTGLS 1017
>gi|386841543|ref|YP_006246601.1| ATP-dependent RNA helicase [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374101844|gb|AEY90728.1| ATP-dependent RNA helicase [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|451794837|gb|AGF64886.1| ATP-dependent RNA helicase [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 739
Score = 378 bits (970), Expect = e-101, Method: Compositional matrix adjust.
Identities = 248/719 (34%), Positives = 370/719 (51%), Gaps = 61/719 (8%)
Query: 246 SALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL------SHDL 299
+A+++ GI ++HQA + +L G +VVVAT T+SGKSL Y +PVL L +
Sbjct: 3 AAVQACGIEHPWAHQALAAEHALDGDSVVVATGTASGKSLAYLVPVLSTLLDGAEAPNGR 62
Query: 300 SSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNP 359
++ALY+ PTKALA DQ R++ +++ S+ VYDGDT ++R W+R ++TNP
Sbjct: 63 GATALYLSPTKALAADQCRSVKELSQPLGTSVRPAVYDGDTPFEEREWIRQYGNYVLTNP 122
Query: 360 DMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTA 419
DMLH ILP H ++S L +L+ +VVIDE H Y+G FG H A
Sbjct: 123 DMLHRGILPSHPRWSSFLRSLK-------------------YVVIDECHTYRGVFGSHVA 163
Query: 420 LILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVL 479
+LRRL RLC+ YGS P F+ ++AT+A P L L +E + +D SP + +F L
Sbjct: 164 QVLRRLRRLCAR-YGSFPVFLLASATAAEPAVAARRLTGLPVVE-VADDASPRGELVFAL 221
Query: 480 WNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCE 539
W P T++ R A + ++ +E + L ++ G+R +AF RSR+ E
Sbjct: 222 WEP----------PLTELHGERGAPVRRTA-TAETADLLTDLTVQGVRSVAFVRSRRGAE 270
Query: 540 LVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDV 599
L+ +E L E L + YR GY+ E+RR +ER G+L G+AAT ALELG+DV
Sbjct: 271 LIAVIAQERLAEVDRSLARRVAAYRGGYLPEERRALERALHSGELLGLAATTALELGVDV 330
Query: 600 GHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIE 659
+D + G+PG+ ASLWQQAGR+GR + +LAV VA + PLD + + +PE LF P+E
Sbjct: 331 SGLDAVVISGYPGTRASLWQQAGRAGRSGQGALAVLVARDDPLDTFLVHHPEALFDQPVE 390
Query: 660 CCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSS 719
+D N VL HL AA E PL+ D FG + + L+ L
Sbjct: 391 STVLDPDNPYVLAPHLCAAAAELPLTE-EDLDLFGPACADVLPQLEAAKLLR------RR 443
Query: 720 AKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQG 779
K + + E+ T IR +V++ + +L ++ A V+EGAV++HQG
Sbjct: 444 TKAWHWTRRERAADLT-DIRGTGGRPVQVVEAGTGRLLGTVDAGAAHSAVHEGAVHLHQG 502
Query: 780 HTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQAL 839
TYLV+ L+L +AL ++AD Y T RD T I + + D A L
Sbjct: 503 RTYLVRSLDLEDSVALVEQADPPYSTVARDTTSIAI----------LETDTEIPWGAGRL 552
Query: 840 ---ACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSF 896
+ VT + R +G + +L LP + ++AVW V +
Sbjct: 553 CYGSVEVTNQVVSYLRRRLITGEVLGETKLDLPPRTLRTRAVWWTVTEDQLDAARITPEI 612
Query: 897 RSG-LHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
G LHAA HA + ++P++ C+ D+ H P + +YD HPGG G +++
Sbjct: 613 LGGSLHAAEHASIGMLPLFATCDRWDIGGVSVPLHPDTLLPT-VFVYDGHPGGAGFAER 670
>gi|379759880|ref|YP_005346277.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium intracellulare MOTT-64]
gi|378807822|gb|AFC51956.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium intracellulare MOTT-64]
Length = 777
Score = 377 bits (969), Expect = e-101, Method: Compositional matrix adjust.
Identities = 251/746 (33%), Positives = 374/746 (50%), Gaps = 68/746 (9%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
HV ++ R + P + A GI+ +SHQ + + AG++VVV+T T+S
Sbjct: 25 HVAELPPRSGRPHDWPAWAEPDVVKAFADRGIAAPWSHQFAAADLAYAGRHVVVSTGTAS 84
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIG------V 335
GKSL Y LPVL AL+ D + LY+ PTKAL DQLRA A+T A + G
Sbjct: 85 GKSLAYQLPVLNALATDPRARVLYLSPTKALGHDQLRAAHALTAAIPRLHEPGFAVAPTA 144
Query: 336 YDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLI 395
YDGD+ + R + R+ +R L +NPDM+H+SIL H +++ +L LR
Sbjct: 145 YDGDSPAEVRRFARERSRWLFSNPDMIHLSILRNHARWAVLLRGLR-------------- 190
Query: 396 FLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCME 455
FVV+DE H Y+G FG + A++LRRL RLC+ Y S P+ +F++AT+ +P E
Sbjct: 191 -----FVVVDECHYYRGVFGSNVAMVLRRLLRLCAR-YSSVPTVIFASATTDSPGATATE 244
Query: 456 LANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVS 515
L L E + DGSP + LW P LR+ L N A S +E +
Sbjct: 245 LIGLPVQE-VTKDGSPQGARTVALWEP--ALRTDLVGE--------NGAPVRRSAGAEAA 293
Query: 516 YLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRI 575
+ A+++ G + + F RSR+ EL + L++ AP L ++ YRAGY+AEDR +
Sbjct: 294 RVMADLIAEGAQTLTFVRSRRAAELTALGAQARLDDIAPELSRTVASYRAGYLAEDRTAL 353
Query: 576 ERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVY 635
ER G+L G+A TNALELG+D+ +D + GFPG++AS WQQAGRSGRR + +L V
Sbjct: 354 ERALAEGRLRGLATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVL 413
Query: 636 VAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGS 695
+A + PLD Y + P L P+E ID N +L L+CAA E PL + +
Sbjct: 414 IARDDPLDTYLVHNPAALLDKPVERVVIDPTNPYILGPQLLCAATELPLGEAEVRELGAT 473
Query: 696 GLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNE 755
++ G L + G L S K F G E P + IR + +++ +
Sbjct: 474 DVADG---LVDDGLLRR-----RSGKYFPAPGLE--PHAAVDIRGSTGGQIVIVEADTGR 523
Query: 756 VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHV 815
+L + +A V+ GAVY+HQG +Y+V L+ IA D Y T R+ TDI V
Sbjct: 524 LLGSTDVGRAPASVHPGAVYLHQGESYVVDSLDTEEGIAFVHAEDPGYATFAREITDIVV 583
Query: 816 SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYES 875
+G A T + VT G+ R SG + D +EL +P+++ +
Sbjct: 584 TGTGERLA-------FGPVTLGLVPVRVTHRVVGYLRRLL-SGEVIDFIELDMPEHTLAT 635
Query: 876 QAVWIQVPQSVKAVVEQNFS---FRSGLHAASHALLHVVPIYVRCNFSDLA----PECPN 928
+V + + A++ LHAA HA + ++P+ C+ D+ P
Sbjct: 636 TSVMYTITE--DALLRNGIDGTRIPGSLHAAEHAAIGLLPLVASCDRGDIGGLSTAVGPG 693
Query: 929 PHDSRYFPERILLYDRHPGGTGVSKQ 954
P P + +YD +PGG G +++
Sbjct: 694 PDG---LPS-VFVYDGYPGGAGFAER 715
>gi|433650530|ref|YP_007295532.1| helicase/secretion neighborhood putative DEAH-box helicase
[Mycobacterium smegmatis JS623]
gi|433300307|gb|AGB26127.1| helicase/secretion neighborhood putative DEAH-box helicase
[Mycobacterium smegmatis JS623]
Length = 776
Score = 377 bits (969), Expect = e-101, Method: Compositional matrix adjust.
Identities = 252/737 (34%), Positives = 380/737 (51%), Gaps = 55/737 (7%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
HV D+ AR+ P + A GI +SHQ + + G++VV++T T+S
Sbjct: 29 HVADLPARQGRPQPWPQWADPDVVRAFVDRGIEAPWSHQLAAANLARDGRHVVLSTGTAS 88
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFD--ASIDIGVYDGD 339
GKSL Y LP+L AL D + ALY+ PTKAL DQLR+ +A+T+A AS+ YDGD
Sbjct: 89 GKSLAYQLPILTALKADPRARALYLSPTKALGHDQLRSAVALTEAVPGLASVAPSSYDGD 148
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
+ + R + R+ +R + +NPDM+H+S+L H +++ L NL+
Sbjct: 149 SPSEVRRFARERSRWIFSNPDMIHLSLLRNHARWAVFLRNLQ------------------ 190
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
F+VIDE H Y+G FG + A++LRRL RLC+ Y + P+ +F++AT+A P EL
Sbjct: 191 -FIVIDECHYYRGIFGSNVAMVLRRLLRLCTR-YSAAPTVIFASATTAQPAATASELIG- 247
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRS-VLNKSQTDMDDTRNAANKTSSPISEVSYLF 518
T+E + +DGSP + LW P LR +L + N A S +E + +
Sbjct: 248 QTVEEVTDDGSPHGARTVALWEP--ALRDDILGE---------NGAPVRRSAGAEAARVM 296
Query: 519 AEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERD 578
A+++ G R + F RSR+ EL R LE+TAP L + + YRAGY+AEDRR +ER
Sbjct: 297 ADLIAEGARTLTFVRSRRGAELTALGARARLEDTAPDLAERVASYRAGYLAEDRRALERA 356
Query: 579 FFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAF 638
G+L G+A TNALELG+D+ +D + GFPG++ S WQQAGRSGRR + +L V +A
Sbjct: 357 LAEGELRGMATTNALELGVDIAGLDAVVLAGFPGTVTSFWQQAGRSGRRGQSALIVLIAR 416
Query: 639 EGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLS 698
+ PLD Y + +P L PIE ID N VL L+CAA E PL+ + ++
Sbjct: 417 DDPLDTYLVHHPAALLDKPIERVVIDPANPYVLGPQLLCAATELPLTDAEVRMWNAEAVA 476
Query: 699 SGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLE 758
L + G L PS F G + P+ + IR + +++ + +L
Sbjct: 477 E---ALVDDGLLRRRPS-----GYFPTPGVDPHPA--VDIRGSSGGQIAILEADTGRLLG 526
Query: 759 EIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGG 818
+A V+ GAVY+HQG +Y+V L+ +A D Y T R+ TD V+G
Sbjct: 527 SAGAGQAPASVHPGAVYLHQGDSYVVDSLDFEDGVAFVHAEDPGYTTFARELTDTVVTGD 586
Query: 819 NNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAV 878
++ T + +VT T G+ R R +G + D VEL +P + ++ AV
Sbjct: 587 GE-------RNSYGAVTVGVVPVSVTNTVTGYLRR-RLNGEVIDFVELDMPTRTLDTMAV 638
Query: 879 WIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPE 937
+ P++++ LHAA HA + ++P+ C+ D+ P
Sbjct: 639 MCTITPEALQRNGIDLLRVPGALHAAEHAAIGLLPLVASCDRGDIGGMSTAIGPVGGLPT 698
Query: 938 RILLYDRHPGGTGVSKQ 954
I +YD +PGG G + +
Sbjct: 699 -IFVYDGYPGGAGFADR 714
>gi|406028766|ref|YP_006727657.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium indicus pranii MTCC 9506]
gi|405127313|gb|AFS12568.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium indicus pranii MTCC 9506]
Length = 777
Score = 377 bits (968), Expect = e-101, Method: Compositional matrix adjust.
Identities = 251/746 (33%), Positives = 374/746 (50%), Gaps = 68/746 (9%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
HV ++ R + P + A GI+ +SHQ + + AG++VVV+T T+S
Sbjct: 25 HVAELPPRSGRPHDWPAWAEPDVVKAFADRGIAAPWSHQFAAAELAYAGRHVVVSTGTAS 84
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIG------V 335
GKSL Y LPVL L+ D + LY+ PTKAL DQLRA A+T A + G
Sbjct: 85 GKSLAYQLPVLNVLATDPRARVLYLSPTKALGHDQLRAAHALTAAIPRLHEPGFAVAPTA 144
Query: 336 YDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLI 395
YDGD+ + R + R+ +R L +NPDM+H+SIL H +++ +L LR
Sbjct: 145 YDGDSPAEVRRFARERSRWLFSNPDMIHLSILRNHARWAVLLRGLR-------------- 190
Query: 396 FLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCME 455
FVV+DE H Y+G FG + A++LRRL RLC+ Y S P+ +F++AT+ +P E
Sbjct: 191 -----FVVVDECHYYRGVFGSNVAMVLRRLLRLCAR-YSSVPTVIFASATTDSPGATATE 244
Query: 456 LANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVS 515
L L E + DGSP + LW P LR+ L N A S +E +
Sbjct: 245 LIGLPVQE-VTKDGSPQGARTVALWEP--ALRTDLVGE--------NGAPVRRSAGAEAA 293
Query: 516 YLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRI 575
+ A+++ G + + F RSR+ EL + L++ AP L ++ YRAGY+AEDR +
Sbjct: 294 RVMADLIAEGAQTLTFVRSRRAAELTALGAQARLDDIAPELSRTVASYRAGYLAEDRTAL 353
Query: 576 ERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVY 635
ER G+L G+A TNALELG+D+ +D + GFPG++AS WQQAGRSGRR + +L V
Sbjct: 354 ERALAEGRLRGLATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVL 413
Query: 636 VAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGS 695
+A + PLD Y + P L P+E ID N +L L+CAA E PL + +
Sbjct: 414 IARDDPLDTYLVHNPAALLDKPVERVVIDPTNPYILGPQLLCAATELPLGEAEVRELGAT 473
Query: 696 GLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNE 755
++ G L + G L S K F G E P + IR + +I+ +
Sbjct: 474 DVADG---LVDDGLLRR-----RSGKYFPAPGLE--PHAAVDIRGSTGGQIVIIEADTGR 523
Query: 756 VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHV 815
+L + +A V+ GAVY+HQG +Y+V L+ IA D Y T R+ TDI V
Sbjct: 524 LLGSTDVGRAPASVHPGAVYLHQGESYVVDSLDTEEGIAFVHAEDPGYATFARELTDIVV 583
Query: 816 SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYES 875
+G A T + VT G+ R SG + D +EL +P+++ +
Sbjct: 584 TGTGERLA-------FGPVTLGLVPVRVTHRVVGYLRRLL-SGEVIDFIELDMPEHTLAT 635
Query: 876 QAVWIQVPQSVKAVVEQNFS---FRSGLHAASHALLHVVPIYVRCNFSDLA----PECPN 928
+V + + A++ + LHAA HA + ++P+ C+ D+ P
Sbjct: 636 TSVMYTITE--DALLRKGIDGTRIPGSLHAAEHAAIGLLPLVASCDRGDIGGLSTAVGPG 693
Query: 929 PHDSRYFPERILLYDRHPGGTGVSKQ 954
P P + +YD +PGG G +++
Sbjct: 694 PDG---LPS-VFVYDGYPGGAGFAER 715
>gi|383649076|ref|ZP_09959482.1| helicase [Streptomyces chartreusis NRRL 12338]
Length = 750
Score = 377 bits (968), Expect = e-101, Method: Compositional matrix adjust.
Identities = 247/716 (34%), Positives = 371/716 (51%), Gaps = 55/716 (7%)
Query: 246 SALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL------SHDL 299
+A+++ GI ++HQA + +L G++VVVAT T+SGKSL Y +PVL L +
Sbjct: 2 AAVQAAGIEHPWAHQARAAEHALDGESVVVATGTASGKSLAYLVPVLSTLLDGAEAPNGR 61
Query: 300 SSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNP 359
++ALY+ PTKALA DQ R++ ++ S+ VYDGDT ++R W+R A ++TNP
Sbjct: 62 GATALYLAPTKALAADQCRSVKELSHPLGHSVRTAVYDGDTPFEEREWIRQYANYVLTNP 121
Query: 360 DMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTA 419
DMLH ILP H ++S L +L+ +VV+DE H Y+G FG H A
Sbjct: 122 DMLHRGILPSHPRWSSFLKSLK-------------------YVVVDECHTYRGVFGSHVA 162
Query: 420 LILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVL 479
+LRRL RLC+ YG+ P F+ ++AT+A P L L LE + +D SP + +F L
Sbjct: 163 QVLRRLRRLCAR-YGASPVFLLASATAAEPAVAAGRLTGLPVLE-VADDASPRGELVFAL 220
Query: 480 WNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCE 539
W P T++ + A + ++ +E + L ++ G+R +AF RSR+ E
Sbjct: 221 WEP----------PLTELHGEKGAPVRRTA-TAEAADLLTDLTVQGVRSVAFVRSRRGAE 269
Query: 540 LVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDV 599
L+ ++E L E L + YR GY+ E+RR +ER G+L G+AATNALELGID+
Sbjct: 270 LISVISQERLAEVDRSLARRVAAYRGGYLPEERRALERALHSGELLGLAATNALELGIDI 329
Query: 600 GHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIE 659
+D + G+PG+ ASLWQQAGR+GR + +LAV VA + PLD + + +PE LF P+E
Sbjct: 330 SGLDAVVIAGYPGTRASLWQQAGRAGRSGQGALAVLVARDDPLDTFLVHHPEALFDQPVE 389
Query: 660 CCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSS 719
+D N VL HL AA E PL+ D FG + L+ L
Sbjct: 390 STVLDPDNPYVLAPHLCAAAEELPLT-DEDLDLFGPACEDLLPQLEAAKLLR------RR 442
Query: 720 AKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQG 779
+ + + E+ T IR +V++ + +L ++ A V+EGAV++HQG
Sbjct: 443 TRAWHWTRRERAADLT-DIRGEGGRPVQVVEDGTGRLLGTVDAGAAHSTVHEGAVHLHQG 501
Query: 780 HTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQAL 839
TYLV+ L+L +AL ++A Y T RD T I V +L + +
Sbjct: 502 RTYLVRSLDLEDSVALVEEAAPPYSTVARDTTSISVL--ETDVEVPWGDGRLCYGSVE-- 557
Query: 840 ACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSG 899
VT F R +G + +L LP + ++AVW V + N G
Sbjct: 558 ---VTNQVVSFLRRRLITGEVLGETKLDLPPRTLRTRAVWWTVTEDQLDRARINPEILGG 614
Query: 900 -LHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
LHAA HA + ++P++ C+ D+ H P + +YD HPGG G +++
Sbjct: 615 SLHAAEHASIGLLPLFATCDRWDIGGVSIPLHPDTLLPT-VFVYDGHPGGAGFAER 669
>gi|116671909|ref|YP_832842.1| DEAD/DEAH box helicase [Arthrobacter sp. FB24]
gi|116612018|gb|ABK04742.1| DEAD/DEAH box helicase domain protein [Arthrobacter sp. FB24]
Length = 804
Score = 377 bits (968), Expect = e-101, Method: Compositional matrix adjust.
Identities = 244/760 (32%), Positives = 379/760 (49%), Gaps = 74/760 (9%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATM 278
Q+ HV I AR+AV P+ + A + GI + Y HQ ++ + G++VV+AT
Sbjct: 19 QLRHVRIIPARQAVNEPWPEWAHPDLVEAYGALGIHEPYRHQIQAANLAHGGEHVVIATG 78
Query: 279 TSSGKSLCYNLPVLEALS-------------HDLSSSALYMFPTKALAQDQLRALLAMTK 325
T+SGKSL Y LP L+A+ HD + ALY+ PTKALA DQL A+ ++
Sbjct: 79 TASGKSLAYQLPALDAIHRSELRVLSEPGKIHDDGAVALYLSPTKALAADQLAAIRSLRL 138
Query: 326 AFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAF 385
++ YDGDT R W+RD+A +++ NPDMLH ILP H ++
Sbjct: 139 P---TVRAETYDGDTDPASRRWIRDHANVILANPDMLHFGILPNHAWWASF--------- 186
Query: 386 SLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSD-----PSFV 440
F +++V++DEAH+Y+G FG H A ++RRL R+C++ YGS P F+
Sbjct: 187 ----------FRRLKYVIVDEAHSYRGVFGSHVANLMRRLRRICAY-YGSSGPQPGPVFI 235
Query: 441 FSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPT-SCLRSVLNKSQTDMDD 499
++AT++ P L + + + D SP W P + LR
Sbjct: 236 AASATASEPGTSFGRLIG-APVRAVSEDSSPHGSTTVAFWEPALTELRG----------- 283
Query: 500 TRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDS 559
N A + + ++E + L A +V +R IAF +SR+ E + + T+ +L+E P L
Sbjct: 284 -ENGAKERRTAVAETADLLANLVSSRIRTIAFIKSRRGAETISAITKRLLDEVDPSLPQR 342
Query: 560 ICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQ 619
+ YR+GY+ E+RR +ER G+L GV++T+ALELGID+ +D L G+PG+ ASL+Q
Sbjct: 343 VAAYRSGYLPEERRALERALRSGELLGVSSTSALELGIDISGLDAVLVAGWPGTRASLFQ 402
Query: 620 QAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAA 679
Q GR+GR + ++A +VA + PLD Y + +PE +F +E D N VL HL AA
Sbjct: 403 QIGRAGRAGQDAIAAFVASDDPLDTYLVNHPEAIFDVSVEATVFDPSNPYVLGPHLCAAA 462
Query: 680 LEHPLSLIYDE-KYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISI 738
E PL Y E FG + L ++GYL P+ + H + + +++
Sbjct: 463 AELPLG--YAELDLFGPTSGKLLDQLVSQGYLRKRPA-------GWFWTHPQSAAAMVNL 513
Query: 739 RAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQK 798
RA ++D ++ +L ++ + +Q + GAVY+HQG +Y+V++LN + + ++
Sbjct: 514 RADGGGPVSIVDAETGSLLGTMDSPQTHYQAHTGAVYVHQGDSYVVEDLNEADHCVMVRR 573
Query: 799 ADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSG 858
A+ Y+T RD T I V T+ + Q VTT F R S
Sbjct: 574 ANPDYYTTARDVTQIEV------LETQRTA-QWGDVAVHFGDVKVTTQVVSFQRKALISN 626
Query: 859 IIFDTVELYLPKYSYESQAVWIQVP-QSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRC 917
I L L ++AVW V +S+ F LHAA HA + ++P+
Sbjct: 627 EILGEEPLELGARDLFTKAVWFVVDNRSLTGAGLIEAQFPGALHAAEHAAIGLLPLVASS 686
Query: 918 NFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTD 957
+ D+ H P I +YD HPGG G +++ D
Sbjct: 687 DRWDIGGVSTAIHADTGVPT-IFVYDGHPGGAGFAERGFD 725
>gi|448604579|ref|ZP_21657746.1| ATP-dependent helicase [Haloferax sulfurifontis ATCC BAA-897]
gi|445743988|gb|ELZ95468.1| ATP-dependent helicase [Haloferax sulfurifontis ATCC BAA-897]
Length = 783
Score = 377 bits (968), Expect = e-101, Method: Compositional matrix adjust.
Identities = 248/771 (32%), Positives = 378/771 (49%), Gaps = 61/771 (7%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
+++E LR +GQ+ AR+ ++ L SAL GI +LY HQAE++
Sbjct: 3 DLIEWLRTRPYYEGQIRSHRRFEAREPAFADVD--LEPRLASALDDRGIDRLYRHQAEAV 60
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLE-ALSHDLSSSALYMFPTKALAQDQLRAL--L 321
A G NVV+AT T+SGKSL Y +P E A+ H LY+ P AL DQL L L
Sbjct: 61 EAIRDGNNVVLATRTASGKSLAYTVPAFERAMDH--GGRTLYLGPQNALVADQLDTLSDL 118
Query: 322 AMTKAFDASIDIGVYDGDTTQKDRMWLRDN-ARLLITNPDMLHMSILPYHGQFSRILSNL 380
A F + + + Y G ++ ++ +R +L++NPDM+H ++LP+
Sbjct: 119 ARGLGFGSRVSVDQYTGRLSKSEKRGVRKRMPTVLLSNPDMVHYALLPH---------AH 169
Query: 381 RLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFV 440
RL + F + VVIDE H Y+G FG H AL++RRL R+C +G+DP FV
Sbjct: 170 RLWEW---------FFSSLETVVIDEVHGYRGVFGSHVALLIRRLKRVCER-FGADPQFV 219
Query: 441 FSTATSANPREHCMELANL--STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMD 498
+AT NP EH + + L+ D S + ++LWNP + D
Sbjct: 220 CCSATIGNPVEHAARITGEREDSFALVDEDASGTGETNWLLWNP----------PEYDNP 269
Query: 499 DTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LV 557
D + + S + E LF ++V G + +AF R+R+ E S + L H L
Sbjct: 270 DAGGSGRRRSGHV-ETKNLFVDLVARGHQTLAFTRARQAAERYASESASDLRSRGEHGLA 328
Query: 558 DSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASL 617
+ Y+A + RR IE G + GV +TNALELG+DVG +DV L G+PG+ S
Sbjct: 329 GEVAAYQASLTHDRRREIEAGLHDGDIAGVWSTNALELGVDVGGLDVVLIDGYPGTRMSA 388
Query: 618 WQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVC 677
WQQAGR+GR +RP+L V V E LDQY M +P + F E D +N +L H+ C
Sbjct: 389 WQQAGRAGRGDRPALVVLVGGEDQLDQYLMNHPAEFFDGDPERAVSDPENDHLLPSHVAC 448
Query: 678 AALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTIS 737
AA E+ LS DE YFG ++ L+ G L+ + D + + G E P H +S
Sbjct: 449 AAAENWLS-TDDESYFGGSFPGVVSDLEADGTLARRETDDGLR--WTHDGGES-PQHAMS 504
Query: 738 IRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQ 797
+R I +++D +++E + + A + GAVY HQG TY V EL+L +A Q
Sbjct: 505 LRTITDREVQLMDSRNDETIATLAFDDALRDAHPGAVYHHQGQTYEVAELDLDRDVARLQ 564
Query: 798 KADLKYFTKTRDYTDIHVSGGNNAYATKIS-KDQLTKTTAQALACTVTTTWFGFYRLWRG 856
Y+T+ D H++ + + +S +D + A+ T+ GF R
Sbjct: 565 PTWADYYTRV--LHDKHITVERDILSKPLSARDDVEVRFAE---VTMRKQITGFERRDPK 619
Query: 857 SGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQ---------NFSFRSGLHAASHAL 907
G L LP+ S ++A++ VP V+ + + ++ F G+HAA H +
Sbjct: 620 RGTTIGQQLLDLPETSLRTKALYFTVPGDVEGEMRELSNDRPEGRDYGFNGGIHAAEHGM 679
Query: 908 LHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDM 958
+ + P+ + C+ D+ P+ S I +YD HPGG G+++ D+
Sbjct: 680 ISLFPLRLLCDRGDIG-GLSTPYHSHTDQSTIFIYDGHPGGVGITRAGYDI 729
>gi|430759489|ref|YP_007215346.1| ATP-dependent RNA helicase [Thioalkalivibrio nitratireducens DSM
14787]
gi|430009113|gb|AGA31865.1| ATP-dependent RNA helicase [Thioalkalivibrio nitratireducens DSM
14787]
Length = 805
Score = 377 bits (967), Expect = e-101, Method: Compositional matrix adjust.
Identities = 247/768 (32%), Positives = 392/768 (51%), Gaps = 93/768 (12%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
+ R A L+ +PD L SAL++ G+ +LYSHQ E+ A AG++ VV T T+SGK+L
Sbjct: 39 LPGRPARLLPLPDGLDPRLASALRARGVVQLYSHQREAWDAVTAGRHTVVVTPTASGKTL 98
Query: 286 CYNLPVLE-ALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKD 344
CYNLPVL+ AL++ + ALY+FPTKAL+QDQ+ L+ + +A I +DGDT
Sbjct: 99 CYNLPVLQSALTN--RAKALYLFPTKALSQDQVAELMELNEAGGLGIRAFTFDGDTPGDA 156
Query: 345 RMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVI 404
R +R ++++NPDMLH +LP+H ++++ NLR +VVI
Sbjct: 157 RKAVRTRGDIVVSNPDMLHQGVLPHHTKWAQFFENLR-------------------YVVI 197
Query: 405 DEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLEL 464
DE H+Y+G FG H A ++RRL R+C YGSDP FV S+AT ANP E L +
Sbjct: 198 DEMHSYRGVFGSHVANVIRRLRRVC-QFYGSDPVFVLSSATIANPAELAEGLIG-EPVTA 255
Query: 465 IQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQH 524
I G+P ++ +LWNP V+N D+ R +A ++ I+ ++ V+
Sbjct: 256 ITESGAPAGERHLLLWNP-----PVVN---ADLG-IRASARSQATRIARMA------VKS 300
Query: 525 GLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKL 584
GL+ I F +SR + E++ Y +++ + P + YR GY+ RR E+ G +
Sbjct: 301 GLKTIVFAQSRLMVEVLTKYLKDVFDAD-PRKPARVAAYRGGYLPGQRRETEKALRAGNV 359
Query: 585 CGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQ 644
V AT+ALELG+D+G +DV + G+PG+IA+ WQ+ GR+GRR+RPSL V VA PLDQ
Sbjct: 360 DCVIATSALELGVDIGSLDVCVLNGYPGTIAATWQRLGRAGRRQRPSLGVLVATSQPLDQ 419
Query: 645 YFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTL 704
Y ++ PE +S E ID +L H+ CAA E P +++ L +T L
Sbjct: 420 YIIRNPEFFLESSPEHARIDPDQLLILLDHVRCAAFELPFR--RGDRFCKENLEELLTYL 477
Query: 705 KNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN--EVLEEIEE 762
+ G L + A + + + P+ ++S+R++ + V+D +++ E++
Sbjct: 478 EEHGVLHRE------ADTWHWT-EDSYPAQSVSLRSVAEGNFVVVDTTGGRKDIIAEVDY 530
Query: 763 SKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAY 822
S A +YEGA+YM Q T+ V+ L+ + + A K ++ Y+T DYT + + + +
Sbjct: 531 SSAAETLYEGAIYMVQAQTWQVERLDWTGRKAFVTKTEVDYYTDAIDYTRLKIL---DRF 587
Query: 823 ATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQV 882
+ +D T+T + + R + I + ++ LP + A W +V
Sbjct: 588 EHR--QDGRTETAHGEVHLVRRIPGYKKIRYYSHENIGYGNID--LPDQEMHTTAAWWEV 643
Query: 883 PQSVKAVVEQNFSFR----SGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYF--- 935
V A Q F R G A++A+ HV + D+ + D+R+F
Sbjct: 644 APEVLA---QWFPNRQQALDGFLGAAYAMHHVAALIAMSEPQDIGRAVGD-GDARWFATV 699
Query: 936 -----------------PER-------ILLYDRHPGGTGVSKQVTDMK 959
PER + LYD +PGG G++ + D +
Sbjct: 700 GTDGRGQMRSLEGGEQDPERETRFRPAVFLYDNYPGGVGLAAPLYDQR 747
>gi|379745150|ref|YP_005335971.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium intracellulare ATCC 13950]
gi|378797514|gb|AFC41650.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium intracellulare ATCC 13950]
Length = 777
Score = 377 bits (967), Expect = e-101, Method: Compositional matrix adjust.
Identities = 251/746 (33%), Positives = 374/746 (50%), Gaps = 68/746 (9%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
HV ++ R + P + A GI+ +SHQ + + AG++VVV+T T+S
Sbjct: 25 HVAELPPRSGRPHDWPAWAEPDVVKAFADRGIAAPWSHQFAAADLAYAGRHVVVSTGTAS 84
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIG------V 335
GKSL Y LPVL AL+ D + LY+ PTKAL DQLR A+T A + G
Sbjct: 85 GKSLAYQLPVLNALATDPRARVLYLSPTKALGHDQLRVAHALTAAIPRLHEPGFAVAPTA 144
Query: 336 YDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLI 395
YDGD+ + R + R+ +R L +NPDM+H+SIL H +++ +L LR
Sbjct: 145 YDGDSPAEVRRFARERSRWLFSNPDMIHLSILRNHARWAVLLRGLR-------------- 190
Query: 396 FLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCME 455
FVV+DE H Y+G FG + A++LRRL RLC+ Y S P+ +F++AT+ +P E
Sbjct: 191 -----FVVVDECHYYRGVFGSNVAMVLRRLLRLCAR-YSSAPTVIFASATTDSPSATATE 244
Query: 456 LANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVS 515
L L E + DGSP + LW P LR+ L N A S +E +
Sbjct: 245 LIGLPVQE-VTKDGSPQGARTVALWEP--ALRTDLVGE--------NGAPVRRSAGAEAA 293
Query: 516 YLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRI 575
+ A+++ G + + F RSR+ EL + L++ AP L ++ YRAGY+AEDR +
Sbjct: 294 RVMADLIAEGAQTLTFVRSRRAAELTALGAQARLDDIAPELSRTVASYRAGYLAEDRTAL 353
Query: 576 ERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVY 635
ER G+L G+A TNALELG+D+ +D + GFPG++AS WQQAGRSGRR + +L V
Sbjct: 354 ERALAEGRLRGLATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVL 413
Query: 636 VAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGS 695
+A + PLD Y + P L P+E ID N +L L+CAA E PL + +
Sbjct: 414 IARDDPLDTYLVHNPAALLDKPVERVVIDPTNPYILGPQLLCAATELPLDEPEVRELGAT 473
Query: 696 GLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNE 755
++ G L + G L S K F G E P + IR + +I+ +
Sbjct: 474 DVADG---LVDDGLLRR-----RSGKYFPAPGLE--PHAAVDIRGSTGGQIVIIEADTGR 523
Query: 756 VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHV 815
+L + +A V+ GAVY+HQG +Y+V L+ IA D Y T R+ TDI V
Sbjct: 524 LLGSTDVGRAPASVHPGAVYLHQGESYVVDSLDTEEGIAFVHAEDPGYATFAREITDIVV 583
Query: 816 SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYES 875
+G A T + VT G+ R SG + D +EL +P+++ +
Sbjct: 584 TGTGERLA-------FGPVTLGLVPVRVTHRVVGYLRRLL-SGEVIDFIELDMPEHTLAT 635
Query: 876 QAVWIQVPQSVKAVVEQNFS---FRSGLHAASHALLHVVPIYVRCNFSDLA----PECPN 928
+V + + A++ + LHAA HA + ++P+ C+ D+ P
Sbjct: 636 TSVMYTITE--DALLRKGIDGTRIPGSLHAAEHAAIGLLPLVASCDRGDIGGLSTAVGPG 693
Query: 929 PHDSRYFPERILLYDRHPGGTGVSKQ 954
P P + +YD +PGG G +++
Sbjct: 694 PDG---LPS-VFVYDGYPGGAGFAER 715
>gi|298530025|ref|ZP_07017427.1| DEAD/DEAH box helicase domain protein [Desulfonatronospira
thiodismutans ASO3-1]
gi|298509399|gb|EFI33303.1| DEAD/DEAH box helicase domain protein [Desulfonatronospira
thiodismutans ASO3-1]
Length = 966
Score = 377 bits (967), Expect = e-101, Method: Compositional matrix adjust.
Identities = 253/765 (33%), Positives = 391/765 (51%), Gaps = 84/765 (10%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E+++ + +G V V++I AR+A I + L K AL +GI Y+HQA ++
Sbjct: 6 ELLQQMGQGDLQGLSTVAVKEIPAREAEFSGI-EGLPPPLKQALTESGIENFYTHQARAV 64
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL--LA 322
G++VV AT T+SGKSL YN+PVLE++ +D +S ALY+FP KAL +DQL +L A
Sbjct: 65 NLVRKGRSVVTATPTASGKSLIYNIPVLESIINDPASRALYLFPLKALTRDQLTSLEEFA 124
Query: 323 MTKAFDASIDIGVYDGDTTQKDRMWLRDNA-RLLITNPDMLHMSILPYHGQFSRILSNLR 381
A +D VYDGDT + R +R +L+TNPDMLH S LPYH + + S L+
Sbjct: 125 RLLAGKVHVDSAVYDGDTDPQARARIRSKPPNILLTNPDMLHRSFLPYHRSWQKFFSALK 184
Query: 382 LIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVF 441
++V+DE H Y+G G + A + RRL R+C+ YG +P F+F
Sbjct: 185 -------------------YIVVDEVHTYRGVMGSNMAWVFRRLRRICAQ-YGREPVFIF 224
Query: 442 STATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTR 501
S+AT ANP + C L E+IQ G+P +K F+L +P +M
Sbjct: 225 SSATIANPGQLCSALTGHEP-EVIQKGGAPAGKKHFLLLDP-------------EMQGAA 270
Query: 502 NAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSIC 561
+A + + + ++ GLR I + +SRK+ EL+ + + A L I
Sbjct: 271 QSAIR----------VLQKALELGLRTIVYTQSRKMTELIAMWA----SQRAGRLKKYIS 316
Query: 562 VYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQA 621
YRAG++ E RR IE+ G+L V +T+ALELGID+GH+D+ L +G+PGS+ + Q+
Sbjct: 317 AYRAGFLPEQRREIEQKLASGELLAVVSTSALELGIDIGHLDLCLLVGYPGSVMATMQRG 376
Query: 622 GRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALE 681
GR GR R S + + E LDQY ++ P + F E I+ N ++ +HLVCAA E
Sbjct: 377 GRVGRSGRDSAIMLIGHEDALDQYLLRNPREFFSLEPESAVINPDNPSIMRRHLVCAAAE 436
Query: 682 HPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAI 741
P++L E + I +L+ G L L S + F Y + P + +R
Sbjct: 437 KPIAL--QEMMLDNEAGKCIKSLEKDGEL-----LASRDRSFYYT-RARYPHKDVDLRGT 488
Query: 742 ESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADL 801
+ Y + + + E L E++ +AF + + GAVY+H G TY+V++L+L + K++
Sbjct: 489 -GQTYNIFEHSTGEYLGEVDGVRAFKETHPGAVYLHMGETYVVQDLDLETFAVYAAKSEA 547
Query: 802 KYFTK--TRDYTDIHVSGGNNAYATKISKDQLTKTTAQALAC----TVTTTWFGF-YRLW 854
Y+T+ T YT+ I + Q T+ TA C VT + RL
Sbjct: 548 NYYTRPITEKYTE-------------IVEVQATRATAAGELCLGRLKVTEHVSAYEKRLV 594
Query: 855 RGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVE-QNFSFRSGLHAASHALLHVVPI 913
RG I + L LP +E+Q +W + V+ VE + F GLHA H L+ +P+
Sbjct: 595 RGQARI-GLIPLDLPPLVFETQGMWFTLDSQVRRDVEDRRLHFMGGLHALEHGLIGCMPL 653
Query: 914 YVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDM 958
+ + +DL +P + + +YD PGG G+ +Q ++
Sbjct: 654 IILTDRNDLG-GIASPVHEQLHKGAVFIYDGTPGGIGLCRQAFEL 697
>gi|340354773|ref|ZP_08677471.1| DEAD/DEAH box family ATP-dependent helicase [Sporosarcina
newyorkensis 2681]
gi|339623025|gb|EGQ27534.1| DEAD/DEAH box family ATP-dependent helicase [Sporosarcina
newyorkensis 2681]
Length = 754
Score = 377 bits (967), Expect = e-101, Method: Compositional matrix adjust.
Identities = 251/747 (33%), Positives = 388/747 (51%), Gaps = 81/747 (10%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
++E + ++A L E P AL + + AL GIS+LYSHQ ++ A G ++ T T+S
Sbjct: 25 YIETLKEQEAKLAEFPPALHPSIRQALAEKGISQLYSHQRQAFDAVSEGNSITAITPTAS 84
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTT 341
GKSLCY+LPVL+++ + SS ALY+FPTKALAQDQL L + +A +I YDGDT
Sbjct: 85 GKSLCYHLPVLQSILDNPSSRALYLFPTKALAQDQLADLHELIEASRETILSHTYDGDTA 144
Query: 342 QKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRF 401
R +R + +++TNPDMLH +ILP+H ++ + NL ++
Sbjct: 145 PGLRAKVRKSGHIILTNPDMLHSAILPHHTKWISLFENL-------------------KY 185
Query: 402 VVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLST 461
+V+DE H YKG FG H A +LRRL R+C YGSDP F+ ++AT +N +E L N
Sbjct: 186 IVVDELHTYKGVFGSHVAHVLRRLQRIC-RFYGSDPIFICTSATISNAKELAENLTNREM 244
Query: 462 LELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEM 521
+ LI +G+P +K FV +NP D+ R +A + EV L A +
Sbjct: 245 V-LIDQNGAPRGKKHFVFYNPPIV---------HDVFGIRRSA------VLEVRDLGAFL 288
Query: 522 VQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVD-SICVYRAGYVAEDRRRIERDFF 580
Q ++ I F RSR E++++Y +E+ T L D ++ YR GY+ +RR+IE
Sbjct: 289 YQRHIQTIIFARSRVRVEMLVTYMKEL---TKKKLFDETVKGYRGGYLPTERRKIESGLK 345
Query: 581 GGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEG 640
G + V +TNALELGID+G + + G+PG+IAS QQAGR+GRR+ +L +YVA
Sbjct: 346 NGDIRTVVSTNALELGIDIGQLQACIMTGYPGNIASALQQAGRAGRRQEDALIIYVAQSM 405
Query: 641 PLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSG 700
PLDQY +K+P L E HI N +L HL CA+ E P S E Y +
Sbjct: 406 PLDQYIIKHPSYLLGQQPEEIHIHPDNMLILMDHLKCASFELPFS--STETYGEFEVQEL 463
Query: 701 ITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDM---QSNEVL 757
+ L++ G L + +S K + ++ ++ P+ IS+R+ E +ID + V+
Sbjct: 464 LAFLQSEGVL-----MQTSDK-WHWMT-DRFPAGEISLRSASQENVVIIDQSFPKETRVI 516
Query: 758 EEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSG 817
E++ A ++E A+Y+HQG Y V++L+ K A D+ YFT ++ V
Sbjct: 517 GEMDRFSAMTLLHEEAIYLHQGTQYQVEKLDWEEKKAYVTVVDVDYFTDANLAVELKVIS 576
Query: 818 GNNAYATKISKDQLTKTTAQA-LACTVTTTWFGFYRLWRGSGIIFDTVE------LYLPK 870
+ +D +T A LA T F I FDT + + LP
Sbjct: 577 EDK------RQDAGERTYAFGDLAVLAIPTIF--------KKIKFDTHDNIGSGPISLPS 622
Query: 871 YSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDL--APECPN 928
+ W+ V + E++ + +A++A+ ++P++V+C+ SD+ P+
Sbjct: 623 EEMHTSGTWLTF--DVPSDWEKS-DLTDAMTSAAYAIQSLIPLFVKCDRSDIHVVPQVKA 679
Query: 929 PHDSRYFPERILLYDRHPGGTGVSKQV 955
H + +YD +PGG G+S +
Sbjct: 680 THTQK---PAFFIYDSYPGGIGLSGNI 703
>gi|448591554|ref|ZP_21651042.1| ATP-dependent helicase [Haloferax elongans ATCC BAA-1513]
gi|445733528|gb|ELZ85097.1| ATP-dependent helicase [Haloferax elongans ATCC BAA-1513]
Length = 791
Score = 377 bits (967), Expect = e-101, Method: Compositional matrix adjust.
Identities = 249/776 (32%), Positives = 380/776 (48%), Gaps = 65/776 (8%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
+++E LR +GQ+ AR ++ L SAL GI LY HQAE++
Sbjct: 3 DIIEWLRTRPYYEGQIRAHRTFEARDPTFADVD--LEPRLASALDDRGIDHLYRHQAEAV 60
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLE-ALSHDLSSSALYMFPTKALAQDQLRAL--L 321
A G NVV+AT T+SGKSL Y +P E A+ H LY+ P AL DQL L L
Sbjct: 61 DAVRDGDNVVLATRTASGKSLAYTVPAFERAMDH--GGRTLYLGPQNALVSDQLDTLSDL 118
Query: 322 AMTKAFDASIDIGVYDGDTTQKDRMWLRDN-ARLLITNPDMLHMSILPYHGQFSRILSNL 380
A F + + + Y G ++ ++ +R +L++NPDM+H ++LP+
Sbjct: 119 AYGLGFGSRVSVDQYTGRLSKSEKREVRKRRPTVLLSNPDMVHYALLPH---------AH 169
Query: 381 RLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFV 440
RL + F + VVIDE H Y+G FG H AL+LRRL R+C +GSDP F+
Sbjct: 170 RLWEW---------FFSSLETVVIDEVHGYRGVFGSHVALLLRRLKRVCER-FGSDPQFI 219
Query: 441 FSTATSANPREHCMELANLS--TLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMD 498
+AT NP EH + S + L+ D S + ++LWNP + +
Sbjct: 220 CCSATIGNPVEHAARITGESEESYTLVNGDASGTGETHWLLWNP----------PEYENP 269
Query: 499 DTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LV 557
D + + S+ + E LF ++V G + +AF R+R+ E S + L H L
Sbjct: 270 DAGGSGRRRSAHV-ETKNLFVDLVSRGHQTLAFTRARQAAERYASESANDLRSRGEHGLA 328
Query: 558 DSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASL 617
+ Y+A + RR IE G + GV +TNALELG+DVG +DV L G+PG+ S
Sbjct: 329 GEVAAYQAALTHDRRREIESGLHDGDITGVWSTNALELGVDVGGLDVVLIDGYPGTRMSA 388
Query: 618 WQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVC 677
WQQAGR+GR +RP+L V V E LDQY MK+ + F+ E D +N +L H+ C
Sbjct: 389 WQQAGRAGRGDRPALVVLVGGEDQLDQYLMKHSGEFFEGDPERAVSDPENDHLLPSHVAC 448
Query: 678 AALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTIS 737
AA E+ LS DE+YFGS + ++TL++ G L+ + D + G P H +S
Sbjct: 449 AASENWLSTA-DEEYFGSSFPNVVSTLEDDGTLARRDTDDGVRWTHDGGG---SPQHAMS 504
Query: 738 IRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQ 797
+R I ++D ++NE + ++ A + GAVY HQG TY V +L+L +A Q
Sbjct: 505 LRTITDREIRLMDSRNNETIAKLAFEDALRDAHPGAVYHHQGQTYEVADLDLDRDVARLQ 564
Query: 798 KADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGS 857
Y+T+ D H++ + + +S + + T+ GF R
Sbjct: 565 PTWADYYTRV--LHDKHITVERDILSKPLSA--RSDVEVRFAEVTMRKQITGFERRDPKR 620
Query: 858 GIIFDTVELYLPKYSYESQAVWIQVPQSVKA---------------VVEQNFSFRSGLHA 902
G L LP+ S ++A++ VP V++ V +++F G+HA
Sbjct: 621 GTTIGQQLLDLPETSLRTKALYFTVPGDVESEMRELGGNSEEDGGLSVGSDYAFNGGIHA 680
Query: 903 ASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDM 958
A H ++ + P+ + C+ D+ P+ S I +YD HPGG G+++ D+
Sbjct: 681 AEHGMISLFPLTLLCDRGDIG-GLSTPYHSHTDQSTIFIYDGHPGGVGLTRAGYDI 735
>gi|363421431|ref|ZP_09309517.1| ATP-dependent helicase [Rhodococcus pyridinivorans AK37]
gi|359734229|gb|EHK83207.1| ATP-dependent helicase [Rhodococcus pyridinivorans AK37]
Length = 782
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 259/757 (34%), Positives = 390/757 (51%), Gaps = 60/757 (7%)
Query: 205 EMVEHLRKGIGS-QGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAES 263
E+++ L G + + + HV +I AR A + P ++ A + G+ + + HQA +
Sbjct: 20 ELLDRLLAGTPTGESPLTHVAEIPARPAHHSDWPQWAHEDVVRAFRDQGVERPWHHQASA 79
Query: 264 IMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAM 323
+ G+NVVV+T T+SGKS+ Y LPVL AL+ D ++ALY+ PTKAL DQLRA+ +
Sbjct: 80 ADIAAGGENVVVSTGTASGKSVAYQLPVLSALADDPQATALYLSPTKALGADQLRAVTEL 139
Query: 324 TKAFDA--SIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLR 381
T D ++ YDGDT+ + R W R ++R + TNPDMLH+S+LP H
Sbjct: 140 TSDIDGLSTVCACAYDGDTSTEIRQWTRRHSRWIFTNPDMLHLSLLPAH----------- 188
Query: 382 LIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVF 441
++ +R+VV+DE H+Y+G FG H ALILRRL R+ YG+DP FV
Sbjct: 189 --------ARWARLWRRLRYVVVDECHSYRGVFGSHVALILRRLRRVAR-RYGADPVFVL 239
Query: 442 STATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTR 501
++AT+A P L E I DGSP + +W P LR + + + R
Sbjct: 240 ASATTAEPGAAASRLIGAPCRE-ITEDGSPHGPRTVAMWEP-PLLRELTGEHGAPV---R 294
Query: 502 NAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSIC 561
AA +E + L A++V G R +AF RSR EL R +L E AP LVD +
Sbjct: 295 RAAG------TEAARLLADLVVEGARTLAFVRSRHGAELTAMGARRLLAEAAPDLVDRVA 348
Query: 562 VYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQA 621
YRAGY+AEDRR +E +L GVA+TNALELG+D+ +D + GFPG++AS QQ
Sbjct: 349 AYRAGYLAEDRRDLEAALSDSRLLGVASTNALELGVDIAGLDAVIVAGFPGTVASFRQQG 408
Query: 622 GRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALE 681
GR+GRR + SL V VA + PLD Y + +P+ L P+E D N VL L+CAA E
Sbjct: 409 GRAGRRGQGSLVVLVARDDPLDTYLVHHPQALLDRPVEATVTDPNNPYVLGPQLLCAASE 468
Query: 682 HPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAI 741
P+S E++ G +T L +G + P ++ P + IR
Sbjct: 469 LPISDAEVEEF---GALDVLTDLAEQGLIRRRPH-------GWFVTPGTQPHGDVEIRGG 518
Query: 742 ESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADL 801
+ +++ + +L ++ ++A V+ GAV++HQG T +V EL L IAL D
Sbjct: 519 IGRQVSIVEGDTGRMLGTVDAARAPATVHPGAVHLHQGETVVVDELYLEDGIALVHAEDP 578
Query: 802 KYFTKTRDYTDIHVSGGNNAYATKISKD---QLTKTTAQALACTVTTTWFGFYRLWRGSG 858
++ T R+ TDI IS D + T ++ VT G+ R SG
Sbjct: 579 EWSTSAREITDI----------CCISVDEHREFGPVTVASVGVEVTHRVVGYLRRLP-SG 627
Query: 859 IIFDTVELYLPKYSYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRC 917
+ D + L +P+++ +++AV + P + + LHAA HA + ++P+ C
Sbjct: 628 EVLDQIPLDVPEHTLDTRAVMYTIDPDLLDRIGVTPDRVPGALHAAEHAAIGLLPLLATC 687
Query: 918 NFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
+ D+ + H P + +YD PGG G +++
Sbjct: 688 DRGDIGGVSTDLHPDTGLPT-VFVYDGQPGGAGFAER 723
>gi|425736493|ref|ZP_18854797.1| DEAD/DEAH box helicase domain-containing protein [Brevibacterium
casei S18]
gi|425478163|gb|EKU45364.1| DEAD/DEAH box helicase domain-containing protein [Brevibacterium
casei S18]
Length = 757
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 236/746 (31%), Positives = 379/746 (50%), Gaps = 63/746 (8%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATM 278
++VH+ +I R + PD + + + A ++ G+ + + HQ E+ A+ G++VV+AT
Sbjct: 19 RIVHLREIPQRVEHESDWPDWVDEELRRAAEAIGVVRPWRHQVEAAQAARDGEDVVIATP 78
Query: 279 TSSGKSLCYNLPVLEALSHDLSS----SALYMFPTKALAQDQLRALLAMTKAFDASIDIG 334
T+SGKSL + LPVLE++ S SA+Y+ PTKALA DQL L + +
Sbjct: 79 TASGKSLGFWLPVLESIQTTRDSLRTASAIYIAPTKALAADQLTKL---EQLIVRGVRPA 135
Query: 335 VYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYL 394
YDGDT+Q + W R +A ++ TNPDMLH +ILP H +F+R+ +LR
Sbjct: 136 AYDGDTSQAAKDWARRHANIIFTNPDMLHRAILPQHERFARLFKSLR------------- 182
Query: 395 IFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCM 454
F+V+DEAH Y+G FG H ALILRRL R+ +H YG+ P + ++AT A P
Sbjct: 183 ------FIVVDEAHRYRGVFGSHVALILRRLLRIAAH-YGAHPIVIGASATMAQPDAAFA 235
Query: 455 ELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEV 514
L + D SP A F LW P +AA ++E
Sbjct: 236 RLTGRPA-HPVTEDASPRAAGSFALWEPP-----------------LSAAGDRRGGMAEA 277
Query: 515 SYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRR 574
+ + + + G R +AF SR+ E + + RE + L + YR GY+AE+RR
Sbjct: 278 ADVLTDAMCAGFRSLAFIASRRGTETLAATVREQVGLVDESLTGKVAAYRGGYLAEERRA 337
Query: 575 IERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAV 634
+E G+L VA+TNALELGID+ +D+ + G+PG++ASLWQQAGR+GR + +AV
Sbjct: 338 LESALRSGRLLAVASTNALELGIDISGLDLVIVSGWPGTLASLWQQAGRAGRAGQRWMAV 397
Query: 635 YVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFG 694
++A + PLD Y + +PE +F +P++ I+ N VL HL AA E PL+ D +F
Sbjct: 398 FIARDDPLDTYVVHHPEVIFDAPVDAGVINPGNPYVLAGHLCAAAAEVPLTR-SDFAHFP 456
Query: 695 SGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN 754
+ + L R L + P + + ++ + IR ++ +++ +
Sbjct: 457 DNAAEVVDDLVERKLLRARP-------LGWFWAKDEPATDQSDIRGSGGGQFRLVEASTG 509
Query: 755 EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIH 814
+L ++E+ A + GAVY HQG +LV++L+L IAL +A++ Y T+ R T+I
Sbjct: 510 TLLGTVDETGAHRGAHPGAVYTHQGTDFLVEDLDLDEHIALVDRAEVDYTTQARSLTEIS 569
Query: 815 VSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRL-WRGSGIIFDTVELYLPKYSY 873
+ ++ L A T YR+ + G I EL LP+ +
Sbjct: 570 I-------VDTATQRTLPSGVGVASGTVDVTDQVVAYRMRAKRGGTILAEHELDLPERTL 622
Query: 874 ESQAVWIQVPQSVKAVVEQNFSFRSG-LHAASHALLHVVPIYVRCNFSDLAPECPNPHDS 932
+ AVW +P+++ E + G +HAA HA + ++P++ C+ D+ H
Sbjct: 623 RTSAVWWTIPKALLESAEVLAADLPGAVHAAEHASIGLLPLFAGCDRWDIGGVSTALHAD 682
Query: 933 RYFPERILLYDRHPGGTGVSKQVTDM 958
+ +YD GG G +++ +++
Sbjct: 683 TGM-ATVFVYDGLAGGAGFAERGSEV 707
>gi|395237620|ref|ZP_10415667.1| putative ATP-dependent helicase [Turicella otitidis ATCC 51513]
gi|423351308|ref|ZP_17328959.1| hypothetical protein HMPREF9719_01254 [Turicella otitidis ATCC
51513]
gi|394487082|emb|CCI83755.1| putative ATP-dependent helicase [Turicella otitidis ATCC 51513]
gi|404386687|gb|EJZ81833.1| hypothetical protein HMPREF9719_01254 [Turicella otitidis ATCC
51513]
Length = 804
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 270/778 (34%), Positives = 387/778 (49%), Gaps = 72/778 (9%)
Query: 200 QLLPLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSH 259
Q L E+++ L + + + ++ + AR A PD + D AL+ G+ + Y H
Sbjct: 15 QGLGGELLDALTRRL-PEAEVTFAGTLPARAARHAPWPDWVPDGLVEALRDRGVERPYRH 73
Query: 260 QAESIMASL--AGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQL 317
QAE +A L G++ +AT TSSGKSL Y LPVL AL+ D ++ ALY+ P KAL DQL
Sbjct: 74 QAE--LADLLHGGRHAAIATGTSSGKSLGYLLPVLAALAEDPAACALYITPAKALGSDQL 131
Query: 318 RALLAMTKAFD--------ASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPY 369
A+ + A AS YDGDT + R +RD++RL++T PDMLH ILP
Sbjct: 132 AAVTRLAAAAARHPSTSKLASASPAPYDGDTPVEARRGVRDSSRLVVTTPDMLHHGILPG 191
Query: 370 HGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLC 429
H +++R+L +LR FVV+DEAH Y+G FG + AL+LRRL RL
Sbjct: 192 HARWARLLRHLR-------------------FVVVDEAHVYRGVFGGNVALVLRRLRRLA 232
Query: 430 SHVYGSDPSFVFSTATSANPREHCMELANLSTLEL--------IQNDGSPCAQKLFVLWN 481
H YGSDP F ++AT+ P H L E I D +P + LW
Sbjct: 233 RH-YGSDPVFATASATATEPGRHAARLIGEPDDEATGACGVAEITEDDAPRGPRTVALWR 291
Query: 482 PTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELV 541
P L + + R+A+ +E + + A +V G R IAF RSR+ E V
Sbjct: 292 PGD-----LPAGEGEEPVRRSAS-------AESADIVATLVDQGARTIAFVRSRQGAESV 339
Query: 542 LSYTREILEETA-PHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVG 600
++ L P + YRAGY+A DRRR+ER G L GVA T+ALELGID+G
Sbjct: 340 ALAAKDRLRALGRPEWAPRLTAYRAGYLAADRRRLERQLDDGTLLGVATTSALELGIDIG 399
Query: 601 HIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIEC 660
+D + GFPG++AS WQQAGR+GRR + SL V+V + PLD Y + +P+ L P+E
Sbjct: 400 SLDAVVEAGFPGTVASFWQQAGRAGRRGQGSLVVFVGRDEPLDNYLLTHPDALLGRPVER 459
Query: 661 CHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDP-SLDSS 719
D +N +L H++CAA E PL E G++ + L+ G L + P +
Sbjct: 460 AVFDPENPYLLRGHVLCAANEKPLPHREAES---PGVAEALRGLEAEGLLRARPRGWFPT 516
Query: 720 AKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQG 779
+ G + P + IR +++ Q+ VL ++ S+A QV+ GA ++HQG
Sbjct: 517 PRPAGAPGSD--PHAAVGIRGEAGGDVTIVESQTGRVLGTVDGSRAKSQVHPGATHLHQG 574
Query: 780 HTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSG--GNNAYATKISKDQLTKTTAQ 837
+++V EL+L +AL + D Y T TDI VS G A L
Sbjct: 575 ESFVVDELDLDEGLALVRADDPGYRTMATSETDIRVSAPPGPGEAAQPSPGLWLAH---- 630
Query: 838 ALACTVTTTWFGF-YRLWRGSGIIFDTVELYLPKYSYESQAVWIQV-PQSVKAVVEQNFS 895
+ +VT G+ RL G I D V L LP + E+ AV + P + + +
Sbjct: 631 -VGVSVTRRVTGYTARLI--DGTIVDNVPLDLPPETLETTAVAYTIDPLVLDELGIEASR 687
Query: 896 FRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSK 953
LHAA HA + ++P+ C+ D+ H P + +YD PGG G SK
Sbjct: 688 VPGTLHAAEHAAIGLLPLVASCDRWDIGGVSTARHADTGLPT-VFVYDGTPGGAGFSK 744
>gi|377566675|ref|ZP_09795931.1| putative ATP-dependent helicase [Gordonia sputi NBRC 100414]
gi|377526149|dbj|GAB41096.1| putative ATP-dependent helicase [Gordonia sputi NBRC 100414]
Length = 791
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 246/752 (32%), Positives = 385/752 (51%), Gaps = 67/752 (8%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+ H+ I +R A PD + + ++AL +GI + + HQ E+ + AG++V +AT T
Sbjct: 25 VTHLSVIDSRSATFASWPDWISNEVRAALVDSGIERPWIHQTEAADHAFAGRHVSIATGT 84
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFD--ASIDIGVYD 337
+SGKSL Y +P+L L + S+ALY+ PTKAL DQL+AL ++ + + YD
Sbjct: 85 ASGKSLSYQMPILTTLLAEPHSTALYLSPTKALGADQLKALTSIISGRRDFSHLQPCAYD 144
Query: 338 GDTTQKDRMWLRDNARLLITNPDMLHMSIL------------PYHGQFSRILSNLRLIAF 385
GDT + R W R ++R + TNPDMLH+ IL P GQ+ +
Sbjct: 145 GDTDSEIRQWARAHSRWIFTNPDMLHLGILTGVATPGTHAGGPSRGQWRQF--------- 195
Query: 386 SLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTAT 445
F +R++V+DE H Y+G FG +TA++LRRL RL GS+P+ + ++AT
Sbjct: 196 ----------FAHLRYIVVDECHHYRGVFGSNTAMVLRRLLRLARAC-GSEPTVIAASAT 244
Query: 446 SANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAAN 505
A+P L + + +DGSP ++ LW P + V + N A
Sbjct: 245 VADPAAALERLIGEPAVG-VTHDGSPRGERTVALWEP-DFVPGVTGE---------NDAP 293
Query: 506 KTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRA 565
S +E S L A+ V G R + F RSR+ E+ R++L +AP LVD + YRA
Sbjct: 294 VRRSADAEASRLLADFVVEGARTLCFGRSRRGVEIAALRARDLLSHSAPDLVDKVAAYRA 353
Query: 566 GYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSG 625
GY+A+DRRR+E G+L GV TNALELG+D+ +D + G+PG+IAS WQQAGR+G
Sbjct: 354 GYLADDRRRLEAAISDGRLVGVTTTNALELGVDITGLDAVIIAGYPGTIASFWQQAGRAG 413
Query: 626 RRERP--SLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHP 683
R+ +L V +A + PLD Y + +P+ L +P+E ID N +L HL+CAA E+P
Sbjct: 414 RQRESGDALVVLIARDDPLDTYLVHHPDALLATPVEAPVIDPTNPYILAPHLLCAATEYP 473
Query: 684 LSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIES 743
L E++ G + L G L A + G E P I IR
Sbjct: 474 LGDNEIERW---GARDAVQQLAADGLLRK-----RKAGWYPAAGVE--PHGDIDIRGGIG 523
Query: 744 ERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKY 803
+ ++D ++E+L ++ +A V+ GAV++HQG +Y+V EL+L +AL + +
Sbjct: 524 GQVLIVDATTSELLGTVDAGRAPATVHPGAVHIHQGESYVVDELDLDEGLALAHPEEPDW 583
Query: 804 FTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDT 863
T R+ T + + + +S + + + V+ G+ R SG + D
Sbjct: 584 TTSARETT-------DVSVTSVVSSNTYGPLSVAFVDVDVSHQVVGYLRSLP-SGEVLDA 635
Query: 864 VELYLPKYSYESQAV-WIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDL 922
VEL +P+ + ++AV + P+S+ V LHAA HA + ++P+ C+ D+
Sbjct: 636 VELDMPRQTLHTRAVMYTLTPESLAEVGIDATRLPGALHAAEHAAIGMLPLVATCDRWDI 695
Query: 923 APECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
N H P + +YD + GG G +++
Sbjct: 696 GGLSTNLHPDTGLPT-VFVYDGYLGGAGFAER 726
>gi|393201405|ref|YP_006463247.1| helicase family protein [Solibacillus silvestris StLB046]
gi|327440736|dbj|BAK17101.1| distinct helicase family with a unique C-terminal domain including
a metal-binding cysteine cluster [Solibacillus
silvestris StLB046]
Length = 758
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 241/745 (32%), Positives = 384/745 (51%), Gaps = 67/745 (8%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+V + I ++A + P L + AL GI +LY HQ ++ + K+ T T
Sbjct: 25 IVAMHTIDEKQAQYADFPPNLHPSIIKALHGRGIEQLYIHQRQAFDYAQQQKHFTAITPT 84
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGD 339
+SGKS CY+LPVL+ + D SS A+Y+FPTKALAQDQ L + + D I YDGD
Sbjct: 85 ASGKSYCYHLPVLQQILEDRSSRAIYLFPTKALAQDQKSDLNELIELMDEDILSYTYDGD 144
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T R +R +++TNPDMLH ILP+H ++ + NL
Sbjct: 145 TAPGIRQKIRKAGHIVMTNPDMLHSGILPHHTKWVSLFENL------------------- 185
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
+++VIDE H YKG FG H A ++RRL R+C YGS+P F+ ++AT NP+E L N
Sbjct: 186 KYIVIDELHTYKGVFGSHVAHVIRRLQRICE-FYGSNPIFICTSATIKNPKELAESLTN- 243
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
S ELI+ G+P +K FV +NP + R +A + EV +
Sbjct: 244 SKHELIEQSGAPVGKKTFVFYNPPIVHPTF---------GVRRSA------VLEVRDISK 288
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVD-SICVYRAGYVAEDRRRIERD 578
+ + G++ I F +SR E++++Y + + TA ++D SI YR GY+ +RR IE+
Sbjct: 289 RLFEAGIQTIIFAKSRVRVEMLVTYLKTL---TAKKIMDESIQGYRGGYLPSERREIEKG 345
Query: 579 FFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAF 638
G + V +TNALELG+D+G + + G+PG+IAS WQQAGR+GRR+ +L VYVA
Sbjct: 346 LRTGSIQMVVSTNALELGVDIGQLQACIMTGYPGNIASAWQQAGRAGRRQDEALIVYVAQ 405
Query: 639 EGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLS 698
LDQY ++ P L S E I+ +N +L +HL CAA E P S+ ++ Y +
Sbjct: 406 STALDQYVVQNPSYLLGSSPEEARINPENLLILMEHLKCAAFELPFSM--EDTYGEYEVQ 463
Query: 699 SGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQS---NE 755
+ L+ G L + +S K + ++ ++ P+H IS+R+ E +ID+ + +
Sbjct: 464 ELLAYLEEEGVL-----VRTSTK-WHWMS-DRFPAHEISLRSAAQENVVIIDISTPANTK 516
Query: 756 VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHV 815
V+ E++ A ++E A+Y+HQG + V++L+ K A ++ D+ YFT ++ V
Sbjct: 517 VIGEMDTYSAMTLLHEEAIYLHQGIQFQVEKLDWEEKKAFVREVDVDYFTDANLAVELKV 576
Query: 816 SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYES 875
+ + K S + A+ F + GSG I +P +
Sbjct: 577 LSEDKSAPFKNSTVSYGDVSILAIPTIFKKIRFNTHDNI-GSGPI------SIPPMEMHT 629
Query: 876 QAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLA--PECPNPHDSR 933
A W+ EQ L A++A+ +P+++ C+ SD++ P+ H+ +
Sbjct: 630 NATWMSFDLPANWTEEQ---LTDALTGAAYAMGSFIPLFIHCDRSDVSVVPQVKAIHNEK 686
Query: 934 YFPERILLYDRHPGGTGVSKQVTDM 958
+ +YD +PGG G+S++V D+
Sbjct: 687 ---PTLFIYDSYPGGIGLSERVYDV 708
>gi|239989554|ref|ZP_04710218.1| putative ATP-dependent RNA helicase [Streptomyces roseosporus NRRL
11379]
Length = 739
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 251/716 (35%), Positives = 375/716 (52%), Gaps = 55/716 (7%)
Query: 246 SALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL------SHDL 299
SA++ GI ++HQA + +L G++VV+AT T+SGKSL Y PVL L +
Sbjct: 3 SAIEKAGIDHPWAHQAAAAEHALDGESVVIATGTASGKSLAYLAPVLSTLLDGSEAPNGR 62
Query: 300 SSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNP 359
++ALY+ PTKALA DQ R++ A+ ++ VYDGDT ++R W+R A ++TNP
Sbjct: 63 GATALYLAPTKALAADQRRSVKALAAPLGNAVRPAVYDGDTPVEEREWVRQYANYVLTNP 122
Query: 360 DMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTA 419
DMLH ILP H ++S L LR FVVIDE H Y+G FG H A
Sbjct: 123 DMLHRGILPSHPRWSSFLRALR-------------------FVVIDECHTYRGVFGSHVA 163
Query: 420 LILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVL 479
+LRRL RLC+ YG+DP F+ ++AT+A+P L L +E + +D SP + +F L
Sbjct: 164 QVLRRLRRLCAR-YGADPVFLLASATAADPAVAAGRLTGLPVVE-VSDDASPRGELVFAL 221
Query: 480 WNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCE 539
W P TD+ + A + ++ +E + L ++ G+R +AF RSR+ E
Sbjct: 222 WEP----------PLTDLHGEKGAPVRRTA-TAETADLLTDLTLQGVRSVAFVRSRRGAE 270
Query: 540 LVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDV 599
L+ +E L E L + YR GY+ E+RR +ER G+L G+AAT ALELGIDV
Sbjct: 271 LISVIAKERLTEVDRSLPKRVAAYRGGYLPEERRALERALHSGELLGLAATTALELGIDV 330
Query: 600 GHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIE 659
+D + G+PG+ ASLWQQAGR+GR + +LAV VA + PLD Y + +PE LF+ P+E
Sbjct: 331 SGLDSVVICGYPGTRASLWQQAGRAGRSGQGALAVLVARDDPLDTYLVHHPEALFRQPVE 390
Query: 660 CCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSS 719
+D N VL HL AA E PL+ D FG + + L+ L
Sbjct: 391 STVLDPDNPYVLAPHLCAAAAELPLTEA-DIALFGPAVPELLPQLEAAKLLR------RR 443
Query: 720 AKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQG 779
A + + E+ + IR ++++ + +L ++ + A V+EGAV++HQG
Sbjct: 444 ASGWHWTRRERA-ADLADIRGGGGRPVQIVEEGTGRLLGTVDAAAAHTAVHEGAVHLHQG 502
Query: 780 HTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQAL 839
T+LV++L+L +AL ++A+ Y T RD T + V + T+I Q
Sbjct: 503 RTHLVRKLDLEDSVALVEQAEPPYSTVARDTTAVTVLETD----TEIPWGQGRLCYG--- 555
Query: 840 ACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSG 899
+ VT F R +G + +L LP + ++AVW V + N G
Sbjct: 556 SVEVTNQVVSFLRRKLITGEVLGETKLDLPPRTLRTRAVWWTVTEDQLDAARINPEILGG 615
Query: 900 -LHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
LHAA HA + ++P++ C+ D+ H P + +YD HPGG G +++
Sbjct: 616 ALHAAEHASIGLLPLFATCDRWDIGGVSVPLHPDTLLPT-VFVYDGHPGGAGFAER 670
>gi|452852723|ref|YP_007494407.1| DEAD/DEAH box helicase domain protein [Desulfovibrio piezophilus]
gi|451896377|emb|CCH49256.1| DEAD/DEAH box helicase domain protein [Desulfovibrio piezophilus]
Length = 961
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 235/726 (32%), Positives = 365/726 (50%), Gaps = 77/726 (10%)
Query: 245 KSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSAL 304
+ AL GI LYSHQAE+ + AG++VVVAT T+SGK+L YNLPV+E D AL
Sbjct: 47 RGALSLLGIETLYSHQAEAADSVRAGRHVVVATPTASGKTLTYNLPVMEHCMADPEVKAL 106
Query: 305 YMFPTKALAQDQLRAL--LAMTKAFDASIDIGVYDGDTTQKDRMWLRDNA-RLLITNPDM 361
Y+FP KALAQDQL+ LA D + +YDGDTT R +R++ ++++NP+M
Sbjct: 107 YLFPLKALAQDQLKGFNELAALLPEDRRPNAAIYDGDTTPHFRKKIRNSPPNVILSNPEM 166
Query: 362 LHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALI 421
+H+S+LP+H ++ L+ L ++V+DE H Y+G G H A++
Sbjct: 167 VHLSMLPHHAAWAEFLAGLS-------------------YIVVDEVHTYRGVMGSHMAMV 207
Query: 422 LRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWN 481
RRL RLC + YG+ P+F+F +AT NP E C L L ++++ G+ + V N
Sbjct: 208 FRRLLRLCEY-YGARPTFIFCSATIGNPVELCHMLTGLDVHPILES-GAARGGRHMVFLN 265
Query: 482 PTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELV 541
P SP L + LR I +C+SRKL EL+
Sbjct: 266 PDG------------------------SPAQVAIQLLQAALARDLRTIVYCQSRKLTELI 301
Query: 542 LSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGH 601
+ E + I YRAG++ E+RR IE G L V +T+ALELGID+G
Sbjct: 302 AMWA----TERSGRFKSRISAYRAGFLPEERREIETRMADGDLLAVISTSALELGIDIGG 357
Query: 602 IDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECC 661
+DV + +G+PGS+ + Q+ GR GR ++ S+ VA E LDQYFM+ PE F P E
Sbjct: 358 LDVCIMVGYPGSVMATQQRGGRVGRSQQESVVALVAQEDALDQYFMRNPEDFFARPPESA 417
Query: 662 HIDAQNHKVLEQHLVCAALEHPLSLIYDEKYF-GSGLSSGITTLKNRGYLSSDPSLDSSA 720
++ N V+++HL+CAA+E L++ E + ++ + L G+L D
Sbjct: 418 MLNPYNPVVMDRHLICAAVE--LTMRRGETFLREDAVAQRVEELVAHGHLYEVVD-DQPG 474
Query: 721 KIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN-----EVLEEIEESKAFFQVYEGAVY 775
E + H K P + +R + + D V+ I+E +AF + + GAVY
Sbjct: 475 HPAEIVSHRKRPHRDVDLRG-AGQSLHIEDNTGGAGGKAPVIGTIDEHRAFREAHPGAVY 533
Query: 776 MHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTD---IHVSGGNNAYATKISKDQLT 832
+H+G TY+V +L+L +K + + Y+TK R + + V G + T++ ++
Sbjct: 534 LHRGATYVVDDLDLGAKAVRTHRQRVGYYTKPRGNKNTEILEVLGQKACFGTRVYFGRV- 592
Query: 833 KTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQ 892
VT G+ + G + L LP +E++++W ++ V+ E+
Sbjct: 593 ---------KVTDQITGYEKRSVRGGKLLGITPLDLPPLVFETESIWFEIGHDVRRRCEE 643
Query: 893 NF-SFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGV 951
F F G+HA HA + ++P+ V + +DL H P + +YD PGG G+
Sbjct: 644 EFMHFMGGIHAFEHAAIGMLPLMVMTDRNDLGGISTPMHPQVEGPA-VFIYDGMPGGAGL 702
Query: 952 SKQVTD 957
S+Q D
Sbjct: 703 SRQAYD 708
>gi|350559942|ref|ZP_08928782.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio
thiocyanoxidans ARh 4]
gi|349782210|gb|EGZ36493.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio
thiocyanoxidans ARh 4]
Length = 806
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 243/768 (31%), Positives = 395/768 (51%), Gaps = 93/768 (12%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
+ R A L+ +PD L SAL++ G+++LYSHQ E+ A AG++ VV T T+SGK+L
Sbjct: 40 LPGRPARLLPLPDELDPRLASALRARGVARLYSHQREAWDAVTAGRHTVVVTPTASGKTL 99
Query: 286 CYNLPVLE-ALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKD 344
CYNLPVL+ AL++ + ALY+FPTKAL+QDQ+ L+ + A + I +DGDT
Sbjct: 100 CYNLPVLQDALTN--RAKALYLFPTKALSQDQVAELMELNDAGNLGIRAFTFDGDTPGDA 157
Query: 345 RMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVI 404
R +R ++++NPDMLH +LP+H ++++ NLR +VVI
Sbjct: 158 RKAVRTRGDIVVSNPDMLHQGVLPHHTKWAQFFENLR-------------------YVVI 198
Query: 405 DEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLEL 464
DE H+Y+G FG H A ++RRL R+C YGSDP FV S+AT ANP E L + + +
Sbjct: 199 DEMHSYRGVFGSHVANVIRRLRRVC-RFYGSDPVFVLSSATIANPAELAEGLIG-APVTV 256
Query: 465 IQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQH 524
+ + G+P ++ +LWNP V+N D+ R +A ++ I+ ++ V+
Sbjct: 257 VTDSGAPVGERHLLLWNP-----PVVN---ADLG-IRASARSQATRIARMA------VKS 301
Query: 525 GLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKL 584
GL+ I F +SR + E++ Y +++ + + P + YR GY+ RR E+ G +
Sbjct: 302 GLKTIVFAQSRLMVEVLTRYLKDVFD-SDPRRPARVAAYRGGYLPGQRRETEKALRAGNV 360
Query: 585 CGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQ 644
V AT+ALELG+D+G +DV + G+PG+IA+ WQ+ GR+GRR+RPSL V VA PLDQ
Sbjct: 361 DCVIATSALELGVDIGSLDVCVLNGYPGTIAATWQRLGRAGRRQRPSLGVLVATSQPLDQ 420
Query: 645 YFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTL 704
Y ++ PE +S E ID +L H+ CAA E P +++ L +T L
Sbjct: 421 YIIRNPEFFLESSPEHARIDPDQLLILLDHVRCAAFELPFR--RGDRFGNENLEELLTYL 478
Query: 705 KNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN--EVLEEIEE 762
+ G L + A + + + P+ ++S+R++ + V+D +++ E++
Sbjct: 479 EEHGVLHRE------ADTWHWT-EDSYPAQSVSLRSVAEGNFVVVDTTGGRRDIIAEVDY 531
Query: 763 SKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAY 822
S A +YEGA+YM Q T+ V+ L+ + + A + ++ Y+T DYT + + + +
Sbjct: 532 SSAAETLYEGAIYMVQAQTWQVERLDWTGRKAFVTRTEVDYYTDAIDYTRLKIL---DRF 588
Query: 823 ATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQV 882
+ +D T+T + + R + I + ++ LP + A W +V
Sbjct: 589 EHR--QDGHTETAHGEVHLVRRIPGYKKIRYYSHENIGYGNID--LPDQEMHTTAAWWEV 644
Query: 883 PQSVKAVVEQNFSFR----SGLHAASHALLHVVPIYVRCNFSDL---------------- 922
V A Q F R G A++A+ HV + D+
Sbjct: 645 APEVLA---QCFPNRQQALDGFLGAAYAMHHVAALIAMSEPQDIGRAVGDGDARWFATVG 701
Query: 923 -----------APECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDMK 959
E H++R+ P + LYD +PGG G++ + D +
Sbjct: 702 ADGRGQMRSLDGGERDPEHETRFRPA-VFLYDNYPGGVGLAAPLYDQR 748
>gi|329939417|ref|ZP_08288753.1| ATP-dependent RNA helicase [Streptomyces griseoaurantiacus M045]
gi|329301646|gb|EGG45540.1| ATP-dependent RNA helicase [Streptomyces griseoaurantiacus M045]
Length = 790
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 248/717 (34%), Positives = 371/717 (51%), Gaps = 61/717 (8%)
Query: 248 LKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL------SHDLSS 301
++ GI ++HQA + +L G +VVVAT T+SGKSL Y +PVL L + +
Sbjct: 1 MRECGIEHPWAHQALAAEHALDGDSVVVATGTASGKSLAYLVPVLSRLLDGSEAPNGRGA 60
Query: 302 SALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDM 361
+ALY+ PTKALA DQ R++ +++ ++ VYDGDT ++R W+R A ++TNPDM
Sbjct: 61 TALYLAPTKALAADQRRSVRELSQPLGTAVRPAVYDGDTPPEEREWVRQYANYVLTNPDM 120
Query: 362 LHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALI 421
LH ILP H +++ L L+ +VVIDE H Y+G FG H A +
Sbjct: 121 LHRGILPSHPRWASFLRALK-------------------YVVIDECHTYRGVFGSHVAQV 161
Query: 422 LRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWN 481
LRRL RLC+ YGS P F+ ++AT+A+P L L +E + +D SP + +F LW
Sbjct: 162 LRRLRRLCAR-YGSSPVFLLASATAADPAVAAGRLTGLPVVE-VADDASPRGELVFALWE 219
Query: 482 PTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELV 541
P T++ + A + ++ +E + L ++V +R +AF RSR+ EL+
Sbjct: 220 P----------PLTELHGEKGAPVRRTA-TAETADLLTDLVVQDVRSVAFVRSRRGAELI 268
Query: 542 LSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGH 601
+E L E L + YR GY+ E+RR +E G+L G+AAT ALELGIDV
Sbjct: 269 SLIAQERLAEVDRSLARRVAAYRGGYLPEERRALEGALHSGELLGLAATTALELGIDVSG 328
Query: 602 IDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECC 661
+D L G+PG+ ASLWQQAGR+GR + +LAV VA + PLD + + +PE LF P+E
Sbjct: 329 LDAVLIAGYPGTRASLWQQAGRAGRAGQGALAVLVARDDPLDTFLVHHPEALFDQPVEST 388
Query: 662 HIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAK 721
+D N VL HL AA E PL+ D FG ++ + L++ G L K
Sbjct: 389 VLDPDNPYVLAPHLCAAAAELPLTE-EDLALFGPACAALMPQLEDAGLLR------RRTK 441
Query: 722 IFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHT 781
+ + E+ + IR +V++ + +L ++ A V+EGAV++HQG T
Sbjct: 442 AWHWTRRERA-ADLADIRGQGGRPVQVVEEGTGRLLGTVDAGAAHTGVHEGAVHLHQGRT 500
Query: 782 YLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQAL-- 839
YLV+ L+L +AL ++AD Y T RD T I V + KD L
Sbjct: 501 YLVRSLDLEDSVALVERADPPYTTVARDTTSISV----------LEKDVEVPWGEGRLCY 550
Query: 840 -ACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRS 898
+ VT + R +G + +L LP + ++AVW V + N
Sbjct: 551 GSVEVTNQVVSYLRRRVLTGEVLGESKLDLPPRTLRTRAVWWTVTEDQLDAARINPENLG 610
Query: 899 G-LHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
G LHAA HA + ++P++ C+ D+ H P + +YD HPGG G +++
Sbjct: 611 GALHAAEHASIGLLPLFATCDRWDIGGVSVPLHPDTLLPT-VFVYDGHPGGAGFAER 666
>gi|45358057|ref|NP_987614.1| helicase [Methanococcus maripaludis S2]
gi|44920814|emb|CAF30050.1| distinct helicase family member with a unique C-terminal domain
including a metal-binding cysteine cluster
[Methanococcus maripaludis S2]
Length = 759
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 231/738 (31%), Positives = 386/738 (52%), Gaps = 64/738 (8%)
Query: 223 VEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSG 282
+++I + A E L DN + L KLY+HQ ++ GKN+++ T T+SG
Sbjct: 29 IKEIPPKNAEYNENNLDLPDNFEEYLLKKN-KKLYTHQYSALENVRIGKNILLTTSTASG 87
Query: 283 KSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQ 342
K+L +NLP+LE L +D ++ALY++PTKAL DQL L + + ++ +YDGDT
Sbjct: 88 KTLSFNLPILETLQNDKDATALYIYPTKALTNDQLNNLKNLENELNITLKPEIYDGDTPN 147
Query: 343 KDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFV 402
R +R+ +R+++TNP LH +L Y+ ++ NL+ ++
Sbjct: 148 SKRKSIREKSRIILTNPHELH-QVLQYNPKWMSFFKNLK-------------------YI 187
Query: 403 VIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTL 462
VIDEAH Y+G FG + + ++RRL R+C YGS P F+ ++AT AN +E +L L
Sbjct: 188 VIDEAHTYRGIFGSNISFLIRRLRRICED-YGSYPQFILASATLANAKEFSEKLVGLD-F 245
Query: 463 ELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMV 522
+I DGSP +K FV +N +N +++S S ++ L M
Sbjct: 246 RVIDKDGSPKNKKYFVFYNTL-----------------KNEISESSWYSSAINILELCM- 287
Query: 523 QHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGG 582
++GL+ I F SRK+ EL+ +T++ L L I YR+G+ E+RR IE G
Sbjct: 288 KYGLQTIGFTLSRKMAELITIWTKKSLGNNI--LSRKISSYRSGFTPEERRDIESRLKNG 345
Query: 583 KLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPL 642
L V +TNALE+GID+G +D + G+PG++ SLWQQAGR+GR S+ ++ E PL
Sbjct: 346 DLRAVTSTNALEVGIDIGSLDSVIMYGYPGTLMSLWQQAGRAGRAGYDSVVTLLSRESPL 405
Query: 643 DQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGIT 702
DQY +K+PE +F E ID +N +++ L+CA E P++L D+ YFG + +
Sbjct: 406 DQYIIKHPETVFGKTTENAVIDLENPQIIVGQLLCATAELPITL-NDKPYFGENIEEYLN 464
Query: 703 TLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEE 762
L + G L+ + + + Y+ + +S+ +I S ++V+D + N ++E ++E
Sbjct: 465 QLCDCGL------LEKTDRGWVYVNTVR-AVELVSLDSIFSSEFKVVDEKGN-LIEILDE 516
Query: 763 SKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAY 822
A+ + + GAV +H Y++KE++L SK+ K D++Y+TK R T++ +
Sbjct: 517 MHAYPEAHVGAVLLHNSENYIIKEMDLESKVCTAVKKDVEYYTKARGSTNVEI------- 569
Query: 823 ATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQV 882
++ + + V+ T+ + + G + + L LP ++++ A+W
Sbjct: 570 INELDRKDFGSVSIHFGEVIVSKTYIMYDVMKFGKRMSQEL--LNLPPITFQTTALWYTF 627
Query: 883 PQSVKAVVE--QNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERIL 940
E + F GLH HA++++ PI++ C+ D+ N H P I
Sbjct: 628 EDEFFNDFENLKEKDFGDGLHGTEHAMINIFPIHIMCDSHDIGGLSTNMHYGTRKPS-IF 686
Query: 941 LYDRHPGGTGVSKQVTDM 958
+YD GG G+SK+ +M
Sbjct: 687 IYDGFEGGIGLSKKAYEM 704
>gi|120603761|ref|YP_968161.1| DEAD/DEAH box helicase [Desulfovibrio vulgaris DP4]
gi|120563990|gb|ABM29734.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris DP4]
Length = 1053
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 233/720 (32%), Positives = 364/720 (50%), Gaps = 90/720 (12%)
Query: 248 LKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMF 307
L GI+ LYSHQA + AG++VVVAT T+SGK+ YNLPVLE D + A+Y+F
Sbjct: 57 LTRQGIADLYSHQARATDIIRAGRDVVVATPTASGKTFIYNLPVLEQFLRDPDARAIYLF 116
Query: 308 PTKALAQDQLRALLAMTKAF--DASIDIGVYDGDTTQKDRMWLRD-NARLLITNPDMLHM 364
P KALAQDQL A+T + DA +YDGDTT R +R+ +L+TNP+MLH+
Sbjct: 117 PLKALAQDQLATFNALTAHWPRDARPAAAIYDGDTTDHFRRKIRNAPPPVLLTNPEMLHL 176
Query: 365 SILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRR 424
++LP+H Q++ + ++L VV+DE H Y+G G H A + RR
Sbjct: 177 ALLPHHEQWASLFASLT-------------------HVVVDEVHTYRGVLGAHMAQVFRR 217
Query: 425 LCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTS 484
L R+C YG+ PSFVF +AT NP E L L T E++ G+P ++ FV +P
Sbjct: 218 LRRVCER-YGAQPSFVFCSATVGNPDELARNLTGL-TPEVVTESGAPQGKRHFVFLDPEE 275
Query: 485 CLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSY 544
SP + L ++ GLR I +C+SR++ ELV +
Sbjct: 276 ------------------------SPATAAIQLLRSALKRGLRTIVYCQSRRMTELVSLW 311
Query: 545 TREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDV 604
E++ P+ D I YRAG++ E+RR +E G+L V T+ALELGID+G +D+
Sbjct: 312 A---AEKSGPYR-DRISAYRAGFLPEERRDVEARMASGQLLAVITTSALELGIDIGSLDL 367
Query: 605 TLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHID 664
+ +G+PG++ S Q+ GR GR + S V VA E LDQYFM++PE F E ++
Sbjct: 368 CILVGYPGTVMSTLQRGGRVGRARQESAVVLVAGEDALDQYFMRHPEDFFARGAEHAVLN 427
Query: 665 AQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYL--SSDPSLDSSAKI 722
N +L +HL CAA E PLS D G + + L+ G L S+D S+
Sbjct: 428 PDNPVILARHLECAAAEIPLSAA-DPWLASPGATEALQRLEREGLLLRSADGSM------ 480
Query: 723 FEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTY 782
+ K P + +R S Y + D + + ++ ++ +A + + GAVY+H+G T+
Sbjct: 481 --LLASRKRPQRHVDLRGSGST-YTIEDGEGH-IIGSVDGHRALRETHPGAVYLHRGRTW 536
Query: 783 LVKELNLSSKIALCQKADLKYFTKTR--------DYTDIHVSGGNNAYATKISKDQLTKT 834
+V++L+ ++ + A + ++T+ R D D V+ G + ++
Sbjct: 537 VVQQLDPGARKVVASPARVGWYTRVRGNKQTEILDVQDRRVAWGTRVFFGRLR------- 589
Query: 835 TAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQN- 893
VT T G+ + G + L LP +E++ +W ++P + + E+
Sbjct: 590 --------VTETVTGYEKRSASGGRLLGVTPLDLPPTVFETEGLWFEIPDAAREATEREL 641
Query: 894 FSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSK 953
F +HA HA + ++P+ V + +DL P + + +YD PGG G+S+
Sbjct: 642 LHFMGSIHALEHAAIGILPLLVMTDRNDLG-GISTPMHPQVGRPAVFIYDGMPGGAGLSR 700
>gi|344341733|ref|ZP_08772649.1| DEAD/DEAH box helicase domain protein [Thiocapsa marina 5811]
gi|343798336|gb|EGV16294.1| DEAD/DEAH box helicase domain protein [Thiocapsa marina 5811]
Length = 814
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 250/785 (31%), Positives = 395/785 (50%), Gaps = 95/785 (12%)
Query: 209 HLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASL 268
HL KG +G++ +AR A +++PD L AL++ G ++LYSHQ E+ +
Sbjct: 33 HLLKGY--RGRIAGESTQAARPARWLDLPDDLAPPLAEALRAGGRAQLYSHQREAWDLAR 90
Query: 269 AGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFD 328
A ++ VVAT T+SGK+LCYNLPVL+A+ ALY+FPTKALAQDQ L+ +++A
Sbjct: 91 AKRHFVVATPTASGKTLCYNLPVLDAVLAQ-GRKALYLFPTKALAQDQAAELMDLSRAIQ 149
Query: 329 ASIDIGV----YDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
A+ GV +DGDT R +R ++++NPDMLH +ILP+H ++++ L
Sbjct: 150 AAGGPGVKAFTFDGDTPGDARKAVRTRGDIVLSNPDMLHQAILPHHTKWAQFFEGLA--- 206
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
F+V+DE H Y+G FG H A + RRL R+C YG +P+F+F++A
Sbjct: 207 ----------------FIVVDELHTYRGVFGSHVANVFRRLLRVC-RFYGVEPTFIFASA 249
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T ANP E L + + I G+P ++ +LWNP V+N D+ R +A
Sbjct: 250 TIANPAELAERLCG-APVAAIAESGAPQGERYLLLWNP-----PVINP---DLG-IRASA 299
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYR 564
++ I+ + + GL+ I F RSR + E++ Y +++ + P + YR
Sbjct: 300 RSQTTRIARTA------AKLGLKSIVFARSRLMVEVITKYLKDVFDRD-PRKPPRVLAYR 352
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
GY+ +RRR E+ G + V +T+ALELG+D+G +DV + G+PG++A+ WQ+ GR+
Sbjct: 353 GGYLPSERRRAEQTMRAGAVDLVVSTSALELGVDIGALDVAILNGYPGTVAATWQRLGRA 412
Query: 625 GRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
GRR +PSL V VA LDQY M++PE F + E I +L H+ CAA E P
Sbjct: 413 GRRLKPSLGVMVATSDALDQYMMRHPEFFFGASPEHARIHPDQLLILMDHVRCAAFELPF 472
Query: 685 SLIYDEKYFGS-GLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIES 743
D + FG+ L ++ L++ G L + ++ + P++ +S+R++
Sbjct: 473 R---DGESFGAEDLGEMLSYLRDEGVLQ------HQGDRWFWVA-DSYPANAVSLRSVAE 522
Query: 744 ERYEVIDMQ--SNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADL 801
+ VID S V+ E++ S A +YEGA+YM Q Y V+ L+ + + A +
Sbjct: 523 GNFVVIDTTGGSQTVIAEVDYSSAPGTLYEGAIYMIQSQPYQVERLDWTGRKAFVTRTRA 582
Query: 802 KYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGF--YRLWRGSGI 859
Y+T DYT + + A + Q TAQ + + G+ R + I
Sbjct: 583 DYYTDAIDYTRLKI------LARFDGRAQGQGATAQG-EVHLVRRYPGYKKIRYYSHDNI 635
Query: 860 IFDTVELYLPKYSYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCN 918
+ ++ LP + AVW QV P +++A + G A++AL HV +
Sbjct: 636 GYGNID--LPDQEMHTTAVWWQVEPSALEAALPDRQQAIDGFLGAAYALHHVAALRSMAE 693
Query: 919 FSDL------------------------APE-CP-NPHDSRYFPERILLYDRHPGGTGVS 952
DL P+ P +P + F + LYD +PGG G+S
Sbjct: 694 IHDLGRSVGDGQGTWFAIVGAEGRGQMRGPDNAPLDPMSGQRFEPTLFLYDNYPGGVGLS 753
Query: 953 KQVTD 957
+ D
Sbjct: 754 APLYD 758
>gi|397734440|ref|ZP_10501147.1| DEAD/DEAH box helicase family protein [Rhodococcus sp. JVH1]
gi|396929711|gb|EJI96913.1| DEAD/DEAH box helicase family protein [Rhodococcus sp. JVH1]
Length = 787
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 254/744 (34%), Positives = 379/744 (50%), Gaps = 70/744 (9%)
Query: 225 DISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKS 284
++ AR + L E P + A++ GI + ++HQA + + G NVVV+T T+SGKS
Sbjct: 42 EMPARTSQLSEWPAWAHPSVVRAMQENGIPRPWTHQATAADLAHHGTNVVVSTGTASGKS 101
Query: 285 LCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAM--TKAFDASIDI-GV----YD 337
L Y LPVL L+ D ++ALY+ PTKAL DQLRA+ ++ ++ DA D+ GV +D
Sbjct: 102 LAYQLPVLTTLATDPRATALYLSPTKALGADQLRAVTSLIDSEVLDAGDDLRGVCPCMFD 161
Query: 338 GDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFL 397
GDT + R W R+N+R L TNPDMLH+S+L H +++ NL
Sbjct: 162 GDTPLEVRHWARENSRWLFTNPDMLHISLLRTHQRWAHFFRNLA---------------- 205
Query: 398 FIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELA 457
+VVIDE H+Y+G FG + AL+LRRL R+ + YG+DP FV ++AT+A+P L
Sbjct: 206 ---YVVIDECHSYRGVFGSNVALVLRRLRRIAA-RYGADPVFVLASATTADPGAAASRLI 261
Query: 458 NLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYL 517
E+++ DGSP + LW P +R V ++ + + R A SE + +
Sbjct: 262 GAPCAEVVE-DGSPHGPRTVALWEP-PLMREVTGENGSPV---RRPAG------SEAARI 310
Query: 518 FAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIER 577
A+++ G R + F RSR+ EL T+ +L E P L + YRAGY+AEDRR +E
Sbjct: 311 MADLMVEGARTLTFVRSRRGAELTAMATKRLLGEIDPELSSRVASYRAGYLAEDRRELET 370
Query: 578 DFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVA 637
G L G A TNALELG+D+ +D + GFPG++AS WQQ GRSGRR SL V +A
Sbjct: 371 ALADGTLLGAATTNALELGVDIAGLDAVVVAGFPGTVASFWQQGGRSGRRGEGSLVVLIA 430
Query: 638 FEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKY----- 692
+ PLD Y + +P L P+E D N VL L+CAA+E PLS E +
Sbjct: 431 RDDPLDTYLVHHPSALLDKPVEATVTDPSNPYVLGPQLLCAAMELPLSDAEAEAFGAIDV 490
Query: 693 FGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQ 752
G G+ + G+ ++ P + IR + ++ +
Sbjct: 491 LGKLAEQGLIRRRAHGW---------------FVTAGTNPHGAVDIRGGIGTQVAIVVSE 535
Query: 753 SNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTD 812
S +L ++ +A + GAV++HQG +Y+V EL+L +AL D + T R+ T+
Sbjct: 536 SGRMLGTVDTGRAPATAHPGAVHIHQGESYVVDELDLDQGLALVHAEDPDWTTSARETTE 595
Query: 813 IHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYS 872
I V+ + + + Q + VT G+ R SG + D VEL +PK +
Sbjct: 596 ITVT-------SVLEQKQFGDVEVALVEVEVTHQVIGYLRRLP-SGEVLDAVELDMPKQT 647
Query: 873 YESQAVWIQVPQS--VKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPH 930
++AV V V+A V LHAA HA + ++P+ C+ D+ H
Sbjct: 648 LHTRAVMYTVTPELLVRAGVPAE-RVPGSLHAAEHAAIGLLPLVAVCDRGDIGGVSTAVH 706
Query: 931 DSRYFPERILLYDRHPGGTGVSKQ 954
P + +YD H GG G + +
Sbjct: 707 ADTGLPT-VFVYDGHAGGAGFADR 729
>gi|407477456|ref|YP_006791333.1| ATP-dependent helicase yprA [Exiguobacterium antarcticum B7]
gi|407061535|gb|AFS70725.1| ATP-dependent helicase yprA [Exiguobacterium antarcticum B7]
Length = 753
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 235/754 (31%), Positives = 377/754 (50%), Gaps = 67/754 (8%)
Query: 207 VEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMA 266
+E L+ ++ +++ + A P + + + AL+ GI+ LY HQ +
Sbjct: 11 LEELKADRSFMERVTYMKTMEATVGRYAPFPKEMPERLRQALERRGITSLYRHQELAFRT 70
Query: 267 SLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKA 326
+G + V+ T T+SGK+ C+NLP+L L ++ ALY++PTKALAQDQ LL +
Sbjct: 71 VQSGASTVIVTPTASGKTYCFNLPILSHLLAHPNARALYLYPTKALAQDQNSELLELIDE 130
Query: 327 FDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFS 386
+A I YDGDT+ R +R ++ITNPDMLH ILP+H ++ + NL
Sbjct: 131 MEAPIRCFTYDGDTSPTIRTKVRKAGNIVITNPDMLHSGILPHHTKWIELFENL------ 184
Query: 387 LVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATS 446
+VIDE H Y+G FG H A ++RRL R+C + YGSDP F+ ++AT
Sbjct: 185 -------------SHIVIDELHTYRGVFGSHVANVIRRLRRICRY-YGSDPIFIMTSATI 230
Query: 447 ANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANK 506
ANP+E L ++LI ++G+P +K F+++ P ++N + R+A +
Sbjct: 231 ANPQELAERLTE-KKVQLIDDNGAPTGRKHFIVYQP-----PIVN---AQLGIRRSATLE 281
Query: 507 TSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILE-ETAPHLVDSICVYRA 565
T L + ++ + I F RSR E++L+Y R ++ E P SI YR
Sbjct: 282 TKQ-------LASRFIKKKFQTIVFARSRVRVEVLLTYLRSLIRHELGPK---SIEGYRG 331
Query: 566 GYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSG 625
GY+ +RR IER G++ G+ +TNALELG+D+G + V + G+PG+IASLWQQAGR+G
Sbjct: 332 GYLPTERRDIERRLRKGEITGIVSTNALELGVDIGQLQVCIMNGYPGTIASLWQQAGRAG 391
Query: 626 RRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLS 685
RR+ +L + VA G LDQY + PE E +D N + H+ CAA E P
Sbjct: 392 RRQDDALIILVASSGMLDQYVAERPELFLNQSPEAARLDPDNLIIAVDHIKCAAFELPFR 451
Query: 686 LIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESER 745
+ FG+ + I YL + L + + Y ++ P+H IS+R+ + E
Sbjct: 452 ---QGETFGTLETEDILE-----YLVEERVLHQRGERY-YWMNDAFPAHGISLRSSDQEN 502
Query: 746 YEVIDMQS--NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKY 803
++D N V+ E++ A +++ A+Y+H Y V+ L+ K A + D+ Y
Sbjct: 503 VIIVDQTEVPNRVIGEMDTFSAMTLLHDEAIYLHGADQYQVEALDFEEKKAFVRAVDVDY 562
Query: 804 FTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDT 863
+T ++ V + Y + + +A FG + GSG I
Sbjct: 563 YTDANFSVELSVLDEDECYTNGDFSVARGDVSVRGMATMFKKIKFGTHENI-GSGPI--- 618
Query: 864 VELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSD-- 921
+LP+ + VW +P++ + E L +++L V P+Y+ C+ SD
Sbjct: 619 ---HLPEREIHTTGVWFSLPETSTSSTE----LEQVLEGVANSLRRVAPLYLMCDASDVF 671
Query: 922 LAPECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
+ P+ H + I LYDR+PGG G++ +
Sbjct: 672 VVPQVKATHTQK---PTIYLYDRYPGGVGLAASI 702
>gi|406665648|ref|ZP_11073420.1| ATP-dependent helicase [Bacillus isronensis B3W22]
gi|405386513|gb|EKB45940.1| ATP-dependent helicase [Bacillus isronensis B3W22]
Length = 758
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 241/745 (32%), Positives = 384/745 (51%), Gaps = 67/745 (8%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+V + I ++A + P L + AL GI +LY HQ ++ + K+ T T
Sbjct: 25 IVAMHTIDEKQAQYADFPPNLHPSIIKALHGRGIEQLYIHQRQAFDYAQQLKHFTAITPT 84
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGD 339
+SGKS CY+LPVL+ + D SS A+Y+FPTKALAQDQ L + + D I YDGD
Sbjct: 85 ASGKSYCYHLPVLQQILEDRSSRAIYLFPTKALAQDQKSDLNELIELMDEDILSYTYDGD 144
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T R +R +++TNPDMLH ILP+H ++ + NL
Sbjct: 145 TAPGIRQKIRKAGHIVMTNPDMLHSGILPHHTKWVSLFENL------------------- 185
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
+++VIDE H YKG FG H A ++RRL R+C YGS+P F+ ++AT NP+E L N
Sbjct: 186 KYIVIDELHTYKGVFGSHVAHVIRRLQRICE-FYGSNPIFICTSATIKNPKELAESLTN- 243
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
S ELI+ G+P +K FV +NP + R +A + EV +
Sbjct: 244 SKHELIEQSGAPVGKKTFVFYNPPIVHPTF---------GVRRSA------VLEVRDISK 288
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVD-SICVYRAGYVAEDRRRIERD 578
+ + G++ I F +SR E++++Y + + TA ++D SI YR GY+ +RR IE+
Sbjct: 289 RLFEAGIQTIIFAKSRVRVEMLVTYLKTL---TAKKIMDESIQGYRGGYLPSERREIEKG 345
Query: 579 FFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAF 638
G + V +TNALELG+D+G + + G+PG+IAS WQQAGR+GRR+ +L VYVA
Sbjct: 346 LRTGSIQMVVSTNALELGVDIGQLQACIMTGYPGNIASAWQQAGRAGRRQDEALIVYVAQ 405
Query: 639 EGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLS 698
LDQY ++ P L S E I+ +N +L +HL CAA E P S+ ++ Y +
Sbjct: 406 STALDQYVVQNPSYLLGSSPEEARINPENLLILMEHLKCAAFELPFSM--EDTYGEYEVQ 463
Query: 699 SGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQS---NE 755
+ L+ G L + +S K + ++ ++ P+H IS+R+ E +ID+ + +
Sbjct: 464 ELLAYLEEEGVL-----VRTSTK-WHWMS-DRFPAHEISLRSAAQENVVIIDISTPANTK 516
Query: 756 VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHV 815
V+ E++ A ++E A+Y+HQG + V++L+ K A ++ D+ YFT ++ V
Sbjct: 517 VIGEMDTYSAMTLLHEEAIYLHQGIQFQVEKLDWEEKKAFVREVDVDYFTDANLAVELKV 576
Query: 816 SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYES 875
+ + K S + A+ F + GSG I +P +
Sbjct: 577 LSEDKSAPFKNSTVSYGDVSILAIPTIFKKIRFNTHDNI-GSGPI------SIPPMEMHT 629
Query: 876 QAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLA--PECPNPHDSR 933
A W+ EQ L A++A+ +P+++ C+ SD++ P+ H+ +
Sbjct: 630 NATWMSFDLPANWTEEQ---LTDALTGAAYAMGSFIPLFIHCDRSDVSVVPQVKAIHNEK 686
Query: 934 YFPERILLYDRHPGGTGVSKQVTDM 958
+ +YD +PGG G+S++V D+
Sbjct: 687 ---PTLFIYDSYPGGIGLSERVYDV 708
>gi|455649436|gb|EMF28249.1| helicase [Streptomyces gancidicus BKS 13-15]
Length = 781
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 247/720 (34%), Positives = 371/720 (51%), Gaps = 61/720 (8%)
Query: 246 SALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL------SHDL 299
+A+++ GI ++HQA + +L G++VVVAT T+SGKSL Y +PVL L +
Sbjct: 3 AAVRAAGIEHPWAHQARAAEHALDGESVVVATGTASGKSLSYLVPVLSTLLDGSEAPNGR 62
Query: 300 SSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNP 359
++ALY+ PTKALA DQ R++ +++ S+ V+DGDT ++R W+R A ++TNP
Sbjct: 63 GATALYLAPTKALAADQCRSVKELSQPLGHSVRAAVHDGDTPFEEREWIRQYANYVLTNP 122
Query: 360 DMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTA 419
DMLH ILP H ++S L L+ +VVIDE H Y+G FG H A
Sbjct: 123 DMLHRGILPSHPRWSSFLKALK-------------------YVVIDECHTYRGVFGSHVA 163
Query: 420 LILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVL 479
+LRRL RLC+ YG+ P F+ ++AT+A P L L +E + +D SP + +F L
Sbjct: 164 QVLRRLRRLCAR-YGASPVFLLASATAAEPAVAARRLTGLPVVE-VADDASPRGELVFAL 221
Query: 480 WNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCE 539
W P T++ + A + ++ +E + L ++ G+R +AF RSR+ E
Sbjct: 222 WEP----------PLTELHGEKGAPVRRTA-TAEAADLLTDLAVQGVRSVAFVRSRRGAE 270
Query: 540 LVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDV 599
L+ +E L E L + YR GY+ E+RR +ER G+L G+AATNALELG+DV
Sbjct: 271 LISVIAQERLAEVDRSLARRVAAYRGGYLPEERRALERALHSGELLGLAATNALELGMDV 330
Query: 600 GHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIE 659
+D + G+PG+ ASLWQQAGR+GR + +LAV VA + PLD + + +PE LF P+E
Sbjct: 331 SGLDAVVIAGYPGTRASLWQQAGRAGRSGQGALAVLVARDDPLDTFLVHHPEALFDRPVE 390
Query: 660 CCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSS 719
+D N VL HL AA E PL+ D FG + L+ L
Sbjct: 391 STVLDPDNPYVLAPHLCAAAEELPLT-DDDLALFGPTAEELLPQLEAAKLLRR------R 443
Query: 720 AKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQG 779
+ + + E+ T IR +V++ + +L ++E A V+EGAV++HQG
Sbjct: 444 TRAWHWTRRERAADLT-DIRGQGGRPVQVVEEGTGRLLGTVDEGAAHTSVHEGAVHLHQG 502
Query: 780 HTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQAL 839
TY+V+ L+L +AL ++A Y T RD T I V + D L
Sbjct: 503 RTYVVRSLDLDDSVALVEQASPSYTTVARDTTSISV----------LETDTEIPWGDGRL 552
Query: 840 ---ACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSF 896
+ VT F R +G + +L LP + ++AVW V + N
Sbjct: 553 CFGSVEVTNQVVSFLRRRVITGEVLGETKLDLPPRTLRTRAVWWTVTEDQLDRARINPEI 612
Query: 897 RSG-LHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
G LHAA HA + ++P++ C+ D+ H P + +YD HPGG G +++
Sbjct: 613 LGGALHAAEHASIGMLPLFATCDRWDIGGVSVPLHPDTLLPT-VFVYDGHPGGAGFAERA 671
>gi|402300475|ref|ZP_10819974.1| ATP-dependent RNA helicase [Bacillus alcalophilus ATCC 27647]
gi|401724390|gb|EJS97757.1| ATP-dependent RNA helicase [Bacillus alcalophilus ATCC 27647]
Length = 760
Score = 374 bits (961), Expect = e-100, Method: Compositional matrix adjust.
Identities = 239/762 (31%), Positives = 385/762 (50%), Gaps = 75/762 (9%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E++++L+K + Q+ + I + A + + + + AL + GI++LY+HQ +
Sbjct: 8 ELIKNLKKDKEFKDQIAYWHQIEGKAAKTIPFSKLIDERIQHALINRGITELYTHQYSAF 67
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
+ ++ V T T+SGK+LCYNLPVL+ + S +LY+FPTKALAQDQ L +
Sbjct: 68 EYATRNEHFVAVTPTASGKTLCYNLPVLQKILEKEESRSLYLFPTKALAQDQKSELNELI 127
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
+ + YDGDT R +R +++TNPDMLH +ILP+H ++ NL
Sbjct: 128 EEMGVPVKCFTYDGDTAPNIRQAVRKAGHVVMTNPDMLHSAILPHHTKWVSFFENL---- 183
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
++V+IDE H Y+G FG H A ++RRL R+ ++ YGS+P F+ ++A
Sbjct: 184 ---------------KYVIIDELHTYRGVFGSHVANVIRRLKRIANY-YGSNPVFIMTSA 227
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T ANP+E L + L+ N+G+P +K F+ +NP ++N+ A
Sbjct: 228 TIANPQELGETLIG-EKVRLVNNNGAPRGKKHFLFYNP-----PIVNQ----------AL 271
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILE-ETAPHLVDSICVY 563
N S EV+ L +++ ++ I F +SR E++LS+ +E+ + E P SI Y
Sbjct: 272 NIRKSSTFEVNTLAKHFLENKIQTIIFAKSRVRVEVILSHLQELTQKELGP---KSIRGY 328
Query: 564 RAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGR 623
R GY+ + RR IE+ G + GV +TNALELG+D+G + V + G+PGSIAS WQQAGR
Sbjct: 329 RGGYLPKQRREIEQGLRNGDIIGVVSTNALELGVDIGQLQVCIMNGYPGSIASAWQQAGR 388
Query: 624 SGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHP 683
+GRR SL + VA P+DQY + P+ F+ E ++ N +L H+ CAA E P
Sbjct: 389 AGRRHTESLIIMVANSNPIDQYVISNPDYFFERSPESARLNPDNLIILVDHIKCAAYELP 448
Query: 684 LSLIYDEKYFGSGLS-SGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIE 742
F G + G+ + +L+ + L + Y ++ P+H IS+R+
Sbjct: 449 ---------FKKGETFDGVEIEEVLEFLAEEQVLHQRVDKW-YWMNDAFPAHGISLRSAS 498
Query: 743 SERYEVIDMQSN---EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKA 799
E +ID V+ E++ A +++ A+Y+HQG Y V+ L+ K A ++
Sbjct: 499 QENVIIIDQSEQAKPSVIGEMDRFSAMTLLHDEAIYLHQGIQYQVEYLDWEEKKAFVRQV 558
Query: 800 DLKYFTKTRDYTDIHV----SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWR 855
++YFT ++ V YA+ D + A TT+
Sbjct: 559 GVEYFTDANLAVNLKVLEEDESKREDYASLSFGDVMVNAKATIFKKIKLTTFENI----- 613
Query: 856 GSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYV 915
GSG I +LP+ + A+W+ + ++ L ++ HV P++V
Sbjct: 614 GSGPI------HLPEEELHTNAMWLSFSSRLLEKYGEDL-LEQALIGLANVFGHVAPVFV 666
Query: 916 RCNFSDL--APECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
C+ SDL P+ H P I +YDR+PGG G++K+V
Sbjct: 667 MCDRSDLHVIPQIKADHSE--LP-TIFMYDRYPGGIGLAKEV 705
>gi|433632738|ref|YP_007266366.1| Putative helicase [Mycobacterium canettii CIPT 140070010]
gi|432164331|emb|CCK61786.1| Putative helicase [Mycobacterium canettii CIPT 140070010]
Length = 772
Score = 374 bits (961), Expect = e-100, Method: Compositional matrix adjust.
Identities = 248/740 (33%), Positives = 379/740 (51%), Gaps = 62/740 (8%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
HV ++ + P+ + A GIS +SHQAE+ + G++VV+ T +S
Sbjct: 25 HVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPWSHQAEAAELAYGGRHVVIGTGPAS 84
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIG--VYDGD 339
GKSL Y LPVL AL+ D + ALY+ PTKAL DQLRA A+ A D+ YDGD
Sbjct: 85 GKSLAYQLPVLNALATDSRARALYLSPTKALGHDQLRAAHALAAAVPRLADVAPTAYDGD 144
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
+ + R + R+ +R L +NPDM H+S+L H +++ +L NLR
Sbjct: 145 SPDEVRRFARERSRWLFSNPDMTHLSVLRNHARWAVLLRNLR------------------ 186
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
FV++DE H Y+G FG + A++LRRL RLC+ Y + P+ +F++AT+A+P +L
Sbjct: 187 -FVIVDECHYYRGVFGSNVAMVLRRLLRLCAR-YSAHPTVIFASATTASPGATAADLIGQ 244
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
+E+ + DGSP + LW P LRS D+ A + S+ +E + + A
Sbjct: 245 PVVEVTE-DGSPRGARTVALWEP--ALRS-------DVIGEHGAPVRRSA-GAEAARVMA 293
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDF 579
+++ G + + F RSR+ EL R L + AP L D++ YRAGY+AEDR + +
Sbjct: 294 DLIVEGAQTLTFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQAL 353
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFE 639
G+L G+A TNALELG+D+ +D + GFPG++AS WQQAGRSGRR + +L V +A +
Sbjct: 354 AEGRLRGLATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARD 413
Query: 640 GPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSS 699
PLD Y + +P L P+E ID N +L L+CAA E PL+ D +
Sbjct: 414 DPLDTYLVHHPAALLDKPVERVVIDPVNPHLLGTQLLCAATELPLN---DAEVRSWSAVE 470
Query: 700 GITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEE 759
+L + G L + K F G + P + IR + +++ ++ +L
Sbjct: 471 VAESLVDDGLLRR-----RNGKYFPAPGVK--PHAAVDIRGAIGGQIVIVEAETGRLLGS 523
Query: 760 IEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGN 819
+ +A + GAVY+HQG TY+V L+ IA D Y T R+ TDI V+G
Sbjct: 524 VGVGQAPAAAHPGAVYLHQGETYVVDSLDFRDGIAFVHAEDPGYATFAREVTDIAVTGTG 583
Query: 820 NAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVW 879
+ T + TVT G+ R + SG + D VEL +PK++ + AV
Sbjct: 584 E-------RLVFGPVTLGLVPVTVTNHVIGYLRR-QLSGEVLDFVELDMPKHTLPTTAVM 635
Query: 880 IQVPQS--VKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPE 937
+ V++ +E LHAA HA + ++P+ C+ D+ + PE
Sbjct: 636 YTITSDALVRSGIEAT-RIPGSLHAAEHAAIGLLPLVASCDRGDI-----GGMSTATGPE 689
Query: 938 ---RILLYDRHPGGTGVSKQ 954
+ +YD +PGG G +++
Sbjct: 690 GLPSVFVYDGYPGGAGFAER 709
>gi|256397551|ref|YP_003119115.1| DEAD/DEAH box helicase [Catenulispora acidiphila DSM 44928]
gi|256363777|gb|ACU77274.1| DEAD/DEAH box helicase domain protein [Catenulispora acidiphila DSM
44928]
Length = 806
Score = 374 bits (961), Expect = e-100, Method: Compositional matrix adjust.
Identities = 250/744 (33%), Positives = 382/744 (51%), Gaps = 61/744 (8%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALK-STGISKLYSHQAESIMASLAGKNVVVAT 277
++ HV + AR AV E P+ + + G+ + + HQ + A+ G++V +AT
Sbjct: 50 RVTHVRVVPARDAVHDEWPEWADEAVVQGFRDGGGVPRPWRHQVAAAEAAREGRHVTLAT 109
Query: 278 MTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYD 337
T+SGKS+ + LP L A+ + + + LY+ PTKALA DQLR L T+ + G+ D
Sbjct: 110 GTASGKSMGFQLPALTAIREN-AGTTLYLAPTKALAADQLRRL---TRLDVPGVRAGLLD 165
Query: 338 GDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFL 397
GDT + R W+R +A +++NPDMLH S+LP H +++ L LR
Sbjct: 166 GDTDAEARDWVRQHANYVLSNPDMLHYSMLPGHARWASFLRKLR---------------- 209
Query: 398 FIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELA 457
+VVIDE H YKG FG H A +LRRL R+C+ YGS P+F+ ++AT+A+P L
Sbjct: 210 ---YVVIDECHTYKGVFGSHVAAVLRRLRRICAR-YGSSPTFILASATTADPAVSASRLT 265
Query: 458 NLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYL 517
+ + + +D SP +F LW P L +++ + R A + S+ +E + L
Sbjct: 266 GVE-VSAVTDDSSPRGPLVFALWEPP--LTTLIGE--------RGAPVRRSA-TAEAADL 313
Query: 518 FAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIER 577
++V +R + F RSR+ E V TR+ LEE I YR GY+ +RR +E
Sbjct: 314 LTDLVLDDVRTVVFTRSRRGAEQVSMQTRDYLEERRTGYGKRIAAYRGGYLKTERRALEA 373
Query: 578 DFF-----GGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSL 632
G L G+AAT ALELG+DV +D L GFPG+ ASLWQQAGR+GR + +L
Sbjct: 374 ALHMDPTKDGALVGLAATTALELGVDVAGLDAVLMAGFPGTRASLWQQAGRAGRAGQGAL 433
Query: 633 AVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKY 692
AV +A + PLD Y + + E +F P+E +D N VL HL AA E PL+ D +
Sbjct: 434 AVLIARDDPLDTYLVHHSESIFDRPVEASVLDPDNPYVLAPHLCAAAAELPLT-DSDLEL 492
Query: 693 FGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQ 752
FG S +T L R YL P+ Y + PS +R +++ Q
Sbjct: 493 FGPTTESLLTDLTRREYLRRRPT-------GWYWTRRERPSALTDLRGTGGASVRIVEDQ 545
Query: 753 SNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTD 812
+ +L ++E + V++GAVY+HQ HTYLV +L+L IAL +A+ Y T RD
Sbjct: 546 TGRLLGTVDEGASHSTVHDGAVYLHQSHTYLVDKLDLEQNIALVHRANPDYTTMARDVVQ 605
Query: 813 IHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYS 872
+ + T+ ++D + + V+T + + G+G I +T L LP+
Sbjct: 606 VSI------LDTEQTQD-WGDASLHFGSVEVSTQVVSYLKRKAGTGQIIETKPLELPERV 658
Query: 873 YESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAP-ECPNPH 930
++AVW V P +++ HAA HA + ++P++ C+ D+ P
Sbjct: 659 LRTRAVWWTVDPAALRDAELDAAMSAGAAHAAEHASIGLLPLFTPCDRWDIGGVSVPLHP 718
Query: 931 DSRYFPERILLYDRHPGGTGVSKQ 954
D+ + +YD HPGG G S++
Sbjct: 719 DTERL--TVFVYDGHPGGAGFSER 740
>gi|302344062|ref|YP_003808591.1| hypothetical protein Deba_2643 [Desulfarculus baarsii DSM 2075]
gi|301640675|gb|ADK85997.1| Protein of unknown function DUF1998 [Desulfarculus baarsii DSM
2075]
Length = 963
Score = 374 bits (961), Expect = e-100, Method: Compositional matrix adjust.
Identities = 247/747 (33%), Positives = 380/747 (50%), Gaps = 83/747 (11%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATM 278
Q+ HV+ + R A E+ L A+ S G+ +LY HQA +I + G++VVVAT
Sbjct: 21 QVSHVQLVPPRAAAFAELDPPLAAPLARAVASLGVERLYDHQARAIALARQGRDVVVATP 80
Query: 279 TSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDG 338
T+SGKSL Y LP LE L + + AL++FP KAL QDQL A+ + VYDG
Sbjct: 81 TASGKSLVYALPALERLLAEPRAKALFLFPLKALEQDQLAAMNELAFRAGLGAPAAVYDG 140
Query: 339 DTTQKDRMWLRDNA-RLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFL 397
DT Q R +R+N ++I+NPDM+H I Y +S L +LRLI
Sbjct: 141 DTPQGQRRKMRENPPAIIISNPDMVHAGICAYPQAWSAFLGDLRLI-------------- 186
Query: 398 FIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELA 457
VIDE HAY+G FGCH A +LRRL RL + + G+ PSFV +AT ANP +H L
Sbjct: 187 -----VIDEVHAYRGVFGCHVAQVLRRLTRLAA-LRGARPSFVLCSATIANPGQHAQALT 240
Query: 458 N--LSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVS 515
+ + +++ G+P A + F L NP AA+ T+S
Sbjct: 241 SRPFADDQVLDFCGAPAAGRWFALVNPV------------------GAASTTAS------ 276
Query: 516 YLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRI 575
+L + V+ GL I F +SR EL+ S+ + L S+ YRAG++ E+RRRI
Sbjct: 277 HLLSTAVRQGLSTICFTKSRIHTELIHSW----VTRGRADLRASVAGYRAGFLPEERRRI 332
Query: 576 ERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVY 635
ERD G+L GV +T+ALE+GID+G +D+ + +G+PGS + WQ+ GR GR R S +
Sbjct: 333 ERDLASGRLAGVVSTSALEMGIDIGGLDLCILVGYPGSQMNTWQRGGRVGRAGRESAVIV 392
Query: 636 VAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFG- 694
VA LDQYF+K+P +L P+E +D N ++ QHL+CAA E PL L D+++F
Sbjct: 393 VAGPDALDQYFVKHPTELLGRPVEAATLDPDNQDIVAQHLLCAAAEEPLDL--DDRFFRL 450
Query: 695 SGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN 754
+ + L G L LD+ + Y + P + +R + + ++D Q+
Sbjct: 451 ERHAEAVAKLSAAGEL----LLDAQGR--RYFPARQRPQRQVDLRG-AGQSFAIVD-QAG 502
Query: 755 EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRD--YTD 812
+V+ I+ ++AF + + GAVY+HQ +Y V +L L + + + Y+T+ R T+
Sbjct: 503 KVIGSIDGARAFKEGHPGAVYLHQTRSYEVTDLELVDHKIIARPRQVDYYTRARSEKETE 562
Query: 813 IHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYS 872
I G A + + + V+ T G+ R + L LP
Sbjct: 563 ILEETGRRPVANFLLRQGRLR---------VSETIVGYERRRISGQDLLGVYPLDLPPLV 613
Query: 873 YESQAVWIQVPQSVKAVVE-QNFSFRSGLHAASHALLHVVPIYVRCNFSDLA----PECP 927
+E+ +WI + S++ ++E + F +HA HA + + P++ C+ D+ P P
Sbjct: 614 FETHGLWIDIEDSLRRLIETRGLHFMGAIHALEHAAIAMFPLFALCDRGDVGGISIPLHP 673
Query: 928 NPHDSRYFPERILLYDRHPGGTGVSKQ 954
+ F +YD GG G++++
Sbjct: 674 QTGKAAVF-----IYDGVAGGVGLARR 695
>gi|241950439|ref|XP_002417942.1| conserved hypothetical protein [Candida dubliniensis CD36]
gi|223641280|emb|CAX45660.1| conserved hypothetical protein [Candida dubliniensis CD36]
Length = 1123
Score = 374 bits (960), Expect = e-100, Method: Compositional matrix adjust.
Identities = 265/816 (32%), Positives = 409/816 (50%), Gaps = 116/816 (14%)
Query: 199 SQLLPLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYS 258
+QLL + LRK VH + + D LL +L+ LYS
Sbjct: 256 TQLLNMNRPADLRKLTTETSSYVHPD-----------LKDVLLKTKNISLEDG----LYS 300
Query: 259 HQAESIMASLAGKN---VVVATMTSSGKSLCYNLPVLEALSHDLSS-------SALYMFP 308
HQA ++ L+ +N V+V+T T+SGKSL Y +PVL ++ D++S +A ++FP
Sbjct: 301 HQAIALETLLSPENKSHVIVSTSTASGKSLIYQIPVLNSILWDIASGLKGRHSTAFFIFP 360
Query: 309 TKALAQDQLRA----LLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHM 364
TKALAQDQ+R L + I + YDGDT K+R + + ++ TNPD +H
Sbjct: 361 TKALAQDQIRHFREFLTHLPTTSSRPIIVNTYDGDTPFKERDKISKESDIIFTNPDTIHA 420
Query: 365 SILPYH--GQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALIL 422
SILP H + LS L+ FVV+DE H YKG FG + ++
Sbjct: 421 SILPNHSFNNWKEFLSALK-------------------FVVMDELHVYKGTFGVNVGFVM 461
Query: 423 RRLCRLCSHVYGSDP-SFVFSTATSANPREHCMELANL---STLELIQNDGSPCAQKLFV 478
RL R+ + D ++ +AT NP H + +L ++ + DGSPC +K +
Sbjct: 462 GRLSRIKDLLSRDDSIQYISCSATIQNPVSHFKTVCSLPENDSIVHVDKDGSPCCEKKLI 521
Query: 479 LWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMV--QHGLRCIAFCRSRK 536
+WNP ++N+ D T + ISE + L +V L+ I FC R
Sbjct: 522 VWNPPP----LMNQRGQKKDITDKYIPRVGM-ISESAKLLVNLVTANDSLKIIVFCPIRV 576
Query: 537 LCELVLSYTREILEETAPH---LVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNAL 593
+CE+++ R +L+ + + I YR GY DRR IE+ F G+L + ATNAL
Sbjct: 577 VCEMLMKEVRHLLQNSFKNSGITQSDIMAYRGGYSKTDRRIIEQKMFNGQLRAIVATNAL 636
Query: 594 ELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERP--SLAVYVAFEGPLDQYFMKYPE 651
ELGID+ H+DV + GFP S ++L QQ GR+GRR+ SLA++V + P+DQY+++ P
Sbjct: 637 ELGIDLSHLDVVITCGFPMSKSNLHQQFGRAGRRKNANGSLAIFVPGKNPIDQYYLENPH 696
Query: 652 KLFKSPIECCHI----DAQNHK-VLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKN 706
+L + E + D + K +LE+HL CAA E P+ L D+K+ G S N
Sbjct: 697 ELLGNNYEDLCVSGIRDMECGKMILERHLQCAAYEEPIEL-DDKKWLMPGGS-------N 748
Query: 707 RGY---LSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNE--VLEEIE 761
+ + L ++ LD K + P +SIRA+E + V+D+ +N V+EEIE
Sbjct: 749 KDFEDILKTNLILDIDGKFKTNPKYYPKPHKIVSIRAVEEPAFAVVDITNNRNIVIEEIE 808
Query: 762 ESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNA 821
S+ F +YEG +++HQG YL+KE N A ++ ++ + T RDYTDI +
Sbjct: 809 FSRTTFTLYEGGIFLHQGQPYLIKEFNDKEFYAKVERVNVDWTTSQRDYTDI------DP 862
Query: 822 YATKISKDQLTKTTAQALACTV-------TTTWFGFYRLWRGSGIIFDTVELYLPKYSYE 874
++ K +AL V T FGF+++ R I+ + VE+ P
Sbjct: 863 EEVEVVKPLYPIDATKALDIPVFSGKVKITMKVFGFFKVNRREEIL-EVVEVKNPPVIAF 921
Query: 875 SQAVWIQVPQ-SVKAVVEQNFSFRSGLHAASHALLHVVPIYVR--------CNFSDLAPE 925
S+ W+ VPQ +++ V E+ S G+HAASHA+++++P+Y+ ++L+ E
Sbjct: 922 SKGFWLNVPQGAIEIVKEKKLSPAGGIHAASHAIMNMLPVYINGCSENGRDVGDTELSTE 981
Query: 926 CPNP-------HDSRYFPERILLYDRH--PGGTGVS 952
C +P R P R++ YD P GTG+S
Sbjct: 982 CKSPAKEFSTRQSRRVRPARLVFYDTKGGPCGTGLS 1017
>gi|85859356|ref|YP_461558.1| dead/deah box helicase [Syntrophus aciditrophicus SB]
gi|85722447|gb|ABC77390.1| dead/deah box helicase [Syntrophus aciditrophicus SB]
Length = 840
Score = 374 bits (960), Expect = e-100, Method: Compositional matrix adjust.
Identities = 247/801 (30%), Positives = 382/801 (47%), Gaps = 97/801 (12%)
Query: 194 RCSDKSQLLPLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGI 253
R D+++L E + L + Q + A P+ + ++ L+ GI
Sbjct: 38 RLEDETKLSLREWLSRLERNRRFQENVAASRHWPATPGRYASFPEWMHSGLRTVLEKRGI 97
Query: 254 SKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALA 313
S+LYSHQAE++ G++VV+ T T+SGK+LCYNLPVL+ + + + ALY+FPTKALA
Sbjct: 98 SELYSHQAEAVECIRNGRDVVLVTPTASGKTLCYNLPVLQKILENPETRALYLFPTKALA 157
Query: 314 QDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQF 373
QDQ+ + + + A I YDGDT R +R +++TNPDMLH ILP+H ++
Sbjct: 158 QDQMHEVSGLIQELKADIKTFTYDGDTPDDARQAIRRQGHVVVTNPDMLHAGILPHHTKW 217
Query: 374 SRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVY 433
++ NL R+VVIDE H Y+G FG H A ++RRL R+C Y
Sbjct: 218 QKLFMNL-------------------RYVVIDELHVYRGIFGSHLANVIRRLVRIC-RFY 257
Query: 434 GSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKS 493
G DP FV +AT ANPREH + + LI + G+P + K F+L+NP R +
Sbjct: 258 GQDPVFVCCSATVANPREHAESILE-RDVHLIDSSGAPTSAKTFILYNPPIVNREL---- 312
Query: 494 QTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETA 553
S ++ +L A++++ G++ I F SR E++ Y +E +
Sbjct: 313 -----------GIRQSALTPACHLAADLIRQGIQTIVFTTSRLNVEILTHYLKEQVNRGR 361
Query: 554 PHLVDSICV--YRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFP 611
VD V YR GY+ RRRIE + GV +TNALELGID+G ++ +G+P
Sbjct: 362 EIPVDDGVVTGYRGGYLPNLRRRIEAGLRSRSILGVVSTNALELGIDIGDLEACFMVGYP 421
Query: 612 GSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVL 671
GSIAS WQQAGR+GRR+ SLA+ +A P+DQ+ + P+ F E C I+ N +L
Sbjct: 422 GSIASTWQQAGRAGRRQGESLALLIARSTPMDQFLAENPDYFFARSPEFCRINPDNLLIL 481
Query: 672 EQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKM 731
H+ AA E P E++ L + L+ +G L + + + + E
Sbjct: 482 LHHIKSAAFELPFE--QGERFGKEDLMELLAYLEEKGVLHRE------GRRWHWAA-ESY 532
Query: 732 PSHTISIRAIESERYEVIDMQSNE---VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELN 788
P+ IS+R+I E VID V+ E++ AF V++ A+YM + Y V +L+
Sbjct: 533 PADEISLRSINPENVVVIDATETGKPVVIAEVDWDSAFTAVHDEAIYMVESQQYHVDKLD 592
Query: 789 LSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTK-TTAQALACTVTTTW 847
L K A +K D+ Y+T YT + V + + K S+ + Q + V
Sbjct: 593 LERKKAYVRKVDVDYYTDAMTYTHVRVI---DEFQQKPSRRAFVEHGEVQVVRKVVGYKK 649
Query: 848 FGFYRLWR-GSGIIFDTVELYLPKYSYESQAVWIQVPQS-VKAVVEQNFSFRSGLHAASH 905
FY G G ++ LP+ + + W +P+ ++ + GL ++
Sbjct: 650 IKFYTAENLGYG------DVNLPEKDMHTTSYWFTLPRDLLRELPFTQAEILDGLSGLAY 703
Query: 906 ALLHVVPIYVRCNFSDL---------------------------------APECPNPHDS 932
AL H+ + + + D+ P+ P D
Sbjct: 704 ALHHLAAMILMADIRDIDRCIGDKSGDFFVSSGRSGRAVASTSSRKSAISDPQAPLRLDD 763
Query: 933 RYFPERILLYDRHPGGTGVSK 953
F + L+D +PGG G S+
Sbjct: 764 --FDPTLFLFDAYPGGIGFSQ 782
>gi|411006193|ref|ZP_11382522.1| ATP-dependent RNA helicase [Streptomyces globisporus C-1027]
Length = 739
Score = 374 bits (960), Expect = e-100, Method: Compositional matrix adjust.
Identities = 251/716 (35%), Positives = 374/716 (52%), Gaps = 55/716 (7%)
Query: 246 SALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL------SHDL 299
SA++ GI ++HQA + +L G++VV+AT T+SGKSL Y PVL L +
Sbjct: 3 SAIEKAGIDHPWAHQAAAAEHALDGESVVIATGTASGKSLAYLAPVLSTLLDGSEAPNGR 62
Query: 300 SSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNP 359
++ALY+ PTKALA DQ R++ A+ ++ VYDGDT ++R W+R A ++TNP
Sbjct: 63 GATALYLAPTKALAADQRRSVKALAAPLGNAVRPAVYDGDTPVEEREWVRQYANYVLTNP 122
Query: 360 DMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTA 419
DMLH ILP H ++S L LR FVVIDE H Y+G FG H A
Sbjct: 123 DMLHRGILPSHPRWSSFLRALR-------------------FVVIDECHTYRGVFGSHVA 163
Query: 420 LILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVL 479
+LRRL RLC+ YG+DP F+ ++AT+A+P L +E + +D SP + +F L
Sbjct: 164 QVLRRLRRLCAR-YGADPVFLLASATAADPAVAAGRLTGRPVVE-VSDDASPRGELVFAL 221
Query: 480 WNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCE 539
W P TD+ + A + ++ +E + L ++ G+R +AF RSR+ E
Sbjct: 222 WEP----------PLTDLHGEKGAPVRRTA-TAETADLLTDLTLQGVRSVAFVRSRRGAE 270
Query: 540 LVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDV 599
L+ +E L E L + YR GY+ E+RR +ER G+L G+AAT ALELGIDV
Sbjct: 271 LISVIAKERLAEVDRSLPKRVAAYRGGYLPEERRALERALHSGELLGLAATTALELGIDV 330
Query: 600 GHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIE 659
+D + G+PG+ ASLWQQAGR+GR + +LAV VA + PLD Y + +PE LF+ P+E
Sbjct: 331 SGLDSVVICGYPGTRASLWQQAGRAGRSGQGALAVLVARDDPLDTYLVHHPEALFRQPVE 390
Query: 660 CCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSS 719
+D N VL HL AA E PL+ D FG + + L+ L
Sbjct: 391 STVLDPDNPYVLAPHLCAAAAELPLTET-DITLFGPAVPELLPQLEAAKLLR------RR 443
Query: 720 AKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQG 779
A + + E+ + IR ++++ + +L ++ + A V+EGAV++HQG
Sbjct: 444 ASGWHWTRRERA-ADLADIRGGGGRPVQIVEEGTGRLLGTVDAAAAHTAVHEGAVHLHQG 502
Query: 780 HTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQAL 839
T+LV++L+L +AL ++A+ Y T RD T I V + T+I Q
Sbjct: 503 RTHLVRKLDLEDSVALVEQAEPPYSTVARDTTAITVLETD----TEIPWGQGRLCYG--- 555
Query: 840 ACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSG 899
+ VT F R +G + +L LP + ++AVW V + N G
Sbjct: 556 SVEVTNQVVSFLRRKLITGEVLGETKLDLPPRTLRTRAVWWTVTEDQLDAARINPEILGG 615
Query: 900 -LHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
LHAA HA + ++P++ C+ D+ H P + +YD HPGG G +++
Sbjct: 616 ALHAAEHASIGLLPLFATCDRWDIGGVSVPLHPDTLLPT-VFVYDGHPGGAGFAER 670
>gi|357634517|ref|ZP_09132395.1| Protein of unknown function DUF1998 [Desulfovibrio sp. FW1012B]
gi|357583071|gb|EHJ48404.1| Protein of unknown function DUF1998 [Desulfovibrio sp. FW1012B]
Length = 1005
Score = 374 bits (959), Expect = e-100, Method: Compositional matrix adjust.
Identities = 247/792 (31%), Positives = 391/792 (49%), Gaps = 88/792 (11%)
Query: 180 RSQSSTSSSHSFQRRCSDKSQLLP----------LEMVEHLRKGIGSQGQMVHVEDISAR 229
RS S+ ++ + C D + P + V LR +VH A
Sbjct: 13 RSLSAPQAAAPGEALCGDAAPSGPPKPDVPEGDVADYVAALRASARLGPLVVHHRTFPAT 72
Query: 230 KAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNL 289
AV + L GI++LY+HQA + AG+++ VAT T+SGK+L Y L
Sbjct: 73 PAVHADPTRPFSRPVAELLARRGITRLYAHQARATDLVRAGRHLAVATPTASGKTLTYLL 132
Query: 290 PVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDAS--IDIGVYDGDTTQKDRMW 347
PVLE + + S A++++P KALAQDQ +A+ +T + AS + ++DGDT+ R
Sbjct: 133 PVLEEVIRNPDSRAIFLYPLKALAQDQKKAIEELTASLPASSRPTVAIFDGDTSPHFRRK 192
Query: 348 LRDNA-RLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDE 406
+RDN +LITNP+MLH+S+LP H +S + + L VV DE
Sbjct: 193 IRDNPPHILITNPEMLHLSLLPNHDAWSTLFAGLT-------------------HVVADE 233
Query: 407 AHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQ 466
H Y+G G H A + RRL R+C+ +G+ PSFVFS+AT NP + L LS ++ +
Sbjct: 234 MHTYRGVMGSHMAHVFRRLLRVCAR-FGARPSFVFSSATIGNPGQLAESLTGLS-VDTVT 291
Query: 467 NDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGL 526
G+P + F+ NP S + L A ++ GL
Sbjct: 292 ESGAPTGPRHFLFINPEQ------------------------SAATTAVMLLAAALKRGL 327
Query: 527 RCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCG 586
R I + +SRK+ EL+ + I E+ P+ + YR+G++ E+RR IE G+L
Sbjct: 328 RTIVYTQSRKMTELISLW---IAEKAGPY-ASRVSAYRSGFLPEERRSIEAAMASGQLLA 383
Query: 587 VAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYF 646
V +T+ALELGID+G +D+ + G+PGS+ + WQ+ GR GR +R S +A E LDQYF
Sbjct: 384 VVSTSALELGIDIGGLDLCILCGYPGSVMAAWQRGGRVGRAQRESAVALIAGEDALDQYF 443
Query: 647 MKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSG-ITTLK 705
M++P F P E I+ N +L +HL CAA E PL+ DE + S G + L+
Sbjct: 444 MRHPADFFDRPPESAVINPDNPAILAKHLECAAAELPLT--EDEPFLASPAVRGEVEKLE 501
Query: 706 NRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKA 765
+G L D ++F K P +++R S I+ + V+ +I+E +A
Sbjct: 502 EKGLLLRD---KDGKRLF---AARKRPHRDVNLRG--SGGQFTIETPAGAVIGQIDEMRA 553
Query: 766 FFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDY--TDI-HVSGGNNAY 822
+ + + GAVY+H+G +YLV+ L++ + + Y+T+ R T+I V G +
Sbjct: 554 YKETHPGAVYIHRGVSYLVESLDIPERRVRVAPGKVDYYTRARGQKTTEILEVLGESKVQ 613
Query: 823 ATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQV 882
+ +L VT T G+ R G + V L P +E++ W +
Sbjct: 614 GVPVFLGRL----------KVTETITGYERRAARGGQLLSIVPLDFPPLVFETEGWWWVI 663
Query: 883 PQSVKAVVEQN-FSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILL 941
P++V+A +++ F F +HA HA++ ++P+ V + +DL P + + +
Sbjct: 664 PEAVQAELDRRLFHFMGAIHAMEHAMIGILPLLVLTDRNDLG-GISTPLHPQVGRACVFI 722
Query: 942 YDRHPGGTGVSK 953
YD PGG G+S+
Sbjct: 723 YDGAPGGIGLSR 734
>gi|46578672|ref|YP_009480.1| DEAD/DEAH box helicase [Desulfovibrio vulgaris str. Hildenborough]
gi|387152101|ref|YP_005701037.1| DEAD/DEAH box helicase [Desulfovibrio vulgaris RCH1]
gi|46448083|gb|AAS94739.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Desulfovibrio
vulgaris str. Hildenborough]
gi|311232545|gb|ADP85399.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris RCH1]
Length = 1121
Score = 374 bits (959), Expect = e-100, Method: Compositional matrix adjust.
Identities = 233/713 (32%), Positives = 363/713 (50%), Gaps = 76/713 (10%)
Query: 248 LKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMF 307
L GI+ LYSHQA + AG++VVVAT T+SGK+ YNLPVLE D + A+Y+F
Sbjct: 125 LTRQGIADLYSHQARATDIIRAGRDVVVATPTASGKTFIYNLPVLEQFLRDPDARAIYLF 184
Query: 308 PTKALAQDQLRALLAMTKAF--DASIDIGVYDGDTTQKDRMWLRD-NARLLITNPDMLHM 364
P KALAQDQL A+T + DA +YDGDTT R +R+ +L+TNP+MLH+
Sbjct: 185 PLKALAQDQLATFNALTAHWPRDARPAAAIYDGDTTDHFRRKIRNAPPPVLLTNPEMLHL 244
Query: 365 SILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRR 424
++LP+H Q++ + ++L VV+DE H Y+G G H A + RR
Sbjct: 245 ALLPHHEQWASLFASLT-------------------HVVVDEVHTYRGVLGAHMAQVFRR 285
Query: 425 LCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTS 484
L R+C YG+ PSFVF +AT NP E L L T E++ G+P ++ F+ +P
Sbjct: 286 LRRVCER-YGAQPSFVFCSATVGNPGELAHNLTGL-TPEVVTESGAPQGKRHFIFLDPEE 343
Query: 485 CLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSY 544
SP + L ++ GLR I +C+SR++ ELV +
Sbjct: 344 ------------------------SPATAAIQLLRSALKRGLRTIVYCQSRRMTELVSLW 379
Query: 545 TREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDV 604
E++ P+ D I YRAG++ E+RR +E G+L V T+ALELGID+G +D+
Sbjct: 380 A---AEKSGPYR-DRISAYRAGFLPEERRDVEARMASGQLLAVITTSALELGIDIGSLDL 435
Query: 605 TLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHID 664
+ +G+PG++ S Q+ GR GR + S V VA E LDQYFM++PE F E ++
Sbjct: 436 CILVGYPGTVMSTLQRGGRVGRARQESAVVLVAGEDALDQYFMRHPEDFFARGAEHAVLN 495
Query: 665 AQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFE 724
N +L +HL CAA E PLS D G S + L+ G L SA
Sbjct: 496 PDNPVILARHLECAAAEIPLSAA-DPWLASPGASEAVQRLEREGLLL------RSADGST 548
Query: 725 YIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLV 784
+ K P + +R S Y + D + + ++ ++ +A + + GAVY+H+G T++V
Sbjct: 549 LLASRKRPQRHVDLRGSGST-YTIEDGEGH-IIGSVDGHRALRETHPGAVYLHRGRTWVV 606
Query: 785 KELNLSSKIALCQKADLKYFTKTRD--YTDI-HVSGGNNAYATKISKDQLTKTTAQALAC 841
++L+ ++ + A + ++T+ R T+I V A+ T++ +L
Sbjct: 607 QQLDPGARKVMASPARVGWYTRVRGNKQTEILDVQDRREAWGTRVFFGRL---------- 656
Query: 842 TVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQN-FSFRSGL 900
VT T G+ + G + L LP +E++ +W ++P + + E+ F +
Sbjct: 657 RVTETVTGYEKRSASGGRLLGVTPLDLPPTVFETEGLWFEIPDAAREATERELLHFMGSI 716
Query: 901 HAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSK 953
HA HA + ++P+ V + +DL P + + +YD PGG +S+
Sbjct: 717 HALEHAAIGILPLLVMTDRNDLG-GISTPMHPQVGRPAVFIYDGMPGGAALSR 768
>gi|408828592|ref|ZP_11213482.1| ATP-dependent RNA helicase [Streptomyces somaliensis DSM 40738]
Length = 763
Score = 374 bits (959), Expect = e-100, Method: Compositional matrix adjust.
Identities = 252/716 (35%), Positives = 363/716 (50%), Gaps = 55/716 (7%)
Query: 247 ALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL------SHDLS 300
A+ G+ ++HQA + +L G++VV+AT T+SGKSL Y PVL AL +
Sbjct: 4 AIHRFGVDHPWAHQAAAAEHALDGESVVIATGTASGKSLAYLAPVLSALLEGSEAADGRG 63
Query: 301 SSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPD 360
++ALY+ PTKALA DQ R + A++ I VYDGDT ++R W+R A ++TNPD
Sbjct: 64 ATALYLSPTKALAADQRRTVRALSAPLGNRIRPAVYDGDTPFEEREWVRQYANYVLTNPD 123
Query: 361 MLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTAL 420
MLH +LP H ++S L LR +VVIDE H Y+G FG H A
Sbjct: 124 MLHRGVLPSHPRWSSFLRALR-------------------YVVIDECHTYRGVFGSHVAQ 164
Query: 421 ILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLW 480
+LRRL RLC+ YGS+P F+ ++AT+A P L L E + +D SP + +F LW
Sbjct: 165 VLRRLRRLCAR-YGSEPVFLLASATAAEPAVAASRLTGLPVRE-VADDASPRGELVFALW 222
Query: 481 NPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCEL 540
P T+++ N A + +E + L ++ G+R +AF RSR+ EL
Sbjct: 223 EP----------PLTELEG-ENGAPVRRTATAETADLLTDLTVQGVRSVAFVRSRRGAEL 271
Query: 541 VLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVG 600
+ +E L L + YR GY+ E+RR +ER G+L G+AAT ALELGIDV
Sbjct: 272 ISVIAQERLAGVDRSLARRVAAYRGGYLPEERRALERALHSGELLGLAATTALELGIDVS 331
Query: 601 HIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIEC 660
+D L G+PG+ ASLWQQAGR+GR +LAV VA + PLD Y + +PE LF+ P+E
Sbjct: 332 GLDAVLICGYPGTRASLWQQAGRAGRSGEGALAVLVARDDPLDTYLVHHPEALFRRPVES 391
Query: 661 CHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSA 720
+D N VL HL AA E PLS D FG + + L+ G L PS
Sbjct: 392 TVLDPDNPYVLAPHLCAAAAESPLS-DEDLALFGPAAAELMPQLETAGLLRRRPS----- 445
Query: 721 KIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGH 780
Y + + IR +++ + +L ++ S A V++GAV++HQG
Sbjct: 446 --GWYWTRRERAADLTDIRGEGRSPVRIVEEGTGRLLGTVDASAAHTTVHQGAVHLHQGR 503
Query: 781 TYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALA 840
TYLV+ L+L +AL ++A Y T RD T + V + +L + Q
Sbjct: 504 TYLVRHLDLEESVALVEEAAPPYSTTARDTTSVSVLETDT--EVPWGDARLCYGSVQ--- 558
Query: 841 CTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSG- 899
VT F R +G + L LP + ++AVW V + N G
Sbjct: 559 --VTNQVVSFLRRRLTTGEVLGETRLDLPPRTLRTRAVWWTVTEDQLDAARVNPEQLGGA 616
Query: 900 LHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
LHAA HA + ++P++ C+ D+ H P + +YD HPGG G +++
Sbjct: 617 LHAAEHASIGLLPLFATCDRWDIGGVSVPLHPDTLLPT-VFVYDGHPGGAGFAERA 671
>gi|326328872|ref|ZP_08195206.1| putative ATP-dependent RNA helicase [Nocardioidaceae bacterium
Broad-1]
gi|325953357|gb|EGD45363.1| putative ATP-dependent RNA helicase [Nocardioidaceae bacterium
Broad-1]
Length = 770
Score = 374 bits (959), Expect = e-100, Method: Compositional matrix adjust.
Identities = 246/758 (32%), Positives = 369/758 (48%), Gaps = 61/758 (8%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
++V L G + ++ H+E + R+AV + P + A + GI + + HQA +
Sbjct: 10 DLVRRLADVPGREDRLAHLEQVPPREAVFADWPTWASPDVVEAFVAHGIRRPWQHQAVAA 69
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSH------DLSSSALYMFPTKALAQDQLR 318
A+ G +V+V+T T+SGKSL Y LP L A+ + + LY+ PTKALAQDQL
Sbjct: 70 EAAHEGSHVIVSTGTASGKSLAYQLPALTAIRDGRGPRGERGAGVLYLAPTKALAQDQLT 129
Query: 319 ALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILS 378
L + + +DGD+T++ R W RD ++TNPDMLH S+LP H +++
Sbjct: 130 GL----RGLGVDVRAVTHDGDSTREQRDWARDYGEYILTNPDMLHRSLLPGHQRWT---- 181
Query: 379 NLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPS 438
AF F +R+VVIDE H Y+G FG H + +LRRL R+C +YGS P+
Sbjct: 182 -----AF----------FRSLRYVVIDECHHYRGVFGAHVSHVLRRLRRIC-ELYGSSPT 225
Query: 439 FVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMD 498
F+ ++AT A P L L L + D SP + LW P + N +
Sbjct: 226 FILASATVAEPATAGERLIGLPVLP-VTADASPRGELSIALWQPPLTTHAGENGAPV--- 281
Query: 499 DTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVD 558
R AA+ +E + L A++V +R +AF RSR E V L E P L
Sbjct: 282 --RRAAS------AETADLLADLVSSDVRTLAFVRSRVGAEQVAMTAATELAEVDPSLPG 333
Query: 559 SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLW 618
+ YR GY+ E+RR IE G+L G+AATNALELGID+ +D + G+PG ++ W
Sbjct: 334 RVTSYRGGYLPEERRAIEASLRSGELLGLAATNALELGIDISGLDAVVLAGYPGRRSAFW 393
Query: 619 QQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCA 678
QQ GR+GR +L + VA + PLD Y + +P+ L P+E D N V+ HL A
Sbjct: 394 QQIGRAGRGAGDALGILVARDDPLDTYLVTHPDALLGQPVEATVFDPANPYVVGPHLCAA 453
Query: 679 ALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISI 738
A E PL+ D FG G + TL G L P Y + + I
Sbjct: 454 AQELPLTE-PDLPLFGPGAREIVDTLVASGLLRKRPR-------GWYWTDRRRAADLADI 505
Query: 739 RAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQK 798
R+ + ++I+ ++ V+ ++ + + + GAVY+H+G TYLV EL+L +A+ +
Sbjct: 506 RSSGGSQVQLIEAETGRVVGTVDAASSHASAHAGAVYVHRGETYLVHELDLEENVAVISR 565
Query: 799 ADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSG 858
D Y T R+ T+I + A + VT F R + SG
Sbjct: 566 DDPGYSTSAREITEISIVAEREQVAWGECRLAYGD-------VDVTHQVVSFLRRRQPSG 618
Query: 859 IIFDTVELYLPKYSYESQAVWIQVPQS-VKAVVEQNFSFRSGLHAASHALLHVVPIYVRC 917
+ L LP+ + + AVW VP S ++AV + HAA H + ++P+ C
Sbjct: 619 EVLGEELLDLPERTLRTSAVWWTVPASALEAVGLEKADIPGAAHAAEHCSIGLLPLIATC 678
Query: 918 NFSDLAPECPNPH-DSRYFPERILLYDRHPGGTGVSKQ 954
+ D+ H D+ + +YD HPGG G S++
Sbjct: 679 DRWDIGGVSTASHPDTGML--TVFVYDGHPGGAGFSER 714
>gi|254388761|ref|ZP_05003994.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
gi|197702481|gb|EDY48293.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
Length = 818
Score = 374 bits (959), Expect = e-100, Method: Compositional matrix adjust.
Identities = 250/760 (32%), Positives = 380/760 (50%), Gaps = 58/760 (7%)
Query: 203 PLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAE 262
P E+++ L ++ H E + R P + +A++ TG+ ++HQAE
Sbjct: 47 PGEVLDRLATRADRAARITHTEHLPPRPGRHAVWPHRIRPEVINAIRLTGVEHPWTHQAE 106
Query: 263 SIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL------SHDLSSSALYMFPTKALAQDQ 316
+ +L G++VV+AT T+SGKSL Y PVL L + ++ALY+ PTKALA DQ
Sbjct: 107 AAGHALDGESVVIATGTASGKSLAYLAPVLTTLLDGAEAPNGRGATALYLAPTKALAADQ 166
Query: 317 LRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRI 376
RA+ A+ K + VYDGDT ++R W+R A ++TNPDMLH ILP H ++S
Sbjct: 167 CRAVKALAKPLGHRVRPAVYDGDTPVEEREWVRQYATYVLTNPDMLHRGILPSHPRWSSF 226
Query: 377 LSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSD 436
L +LR +VVIDE H Y+G FG H A +LRRL R+C YG+D
Sbjct: 227 LRSLR-------------------YVVIDECHTYRGVFGSHVAQVLRRLRRICVR-YGAD 266
Query: 437 PSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTD 496
P F+ ++AT+A+P L L +E + +D SP + +F LW P T+
Sbjct: 267 PVFLLASATAADPAVAAHRLTGLPVVE-VSDDASPRGELVFALWEP----------PLTE 315
Query: 497 MDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHL 556
+ R A + ++ +E + L ++ G+R +AF RSR+ EL+ +E L E L
Sbjct: 316 LRGERGAPVRRTA-TAETADLLTDLTVQGVRTVAFVRSRRGAELISVIAKERLAEVDRSL 374
Query: 557 VDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIAS 616
+ YR GY+ E+RR +E G+L G+AAT ALELG+DV +D + G+PG+ AS
Sbjct: 375 PRRVAAYRGGYLPEERRALENALHSGELLGLAATTALELGVDVSGLDAVVISGYPGTRAS 434
Query: 617 LWQQAGRSGRRERPSLAVYVAFEGPLDQYFMK-YPEKLFKSPIECCHIDAQNHKVLEQHL 675
LWQQAGR+GR + +LAV+ + G + + +P + S +D N VL HL
Sbjct: 435 LWQQAGRAGRAGQGALAVW--WPGTTAGHLSRPHPRRCSGSRWSSTVLDPDNPYVLAPHL 492
Query: 676 VCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHT 735
AA E PL+ D FG + + L+ L A + + E+ T
Sbjct: 493 CAAAAELPLTEA-DLALFGPAAAGLMPQLEGARLLR------RRATGWHWTRRERAADLT 545
Query: 736 ISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIAL 795
IR ++++ + +L ++ES A V+EGAV++HQG TYLV+ L+L +AL
Sbjct: 546 -DIRGEGGRPVQIVEESTGRLLGTVDESAAHTSVHEGAVHLHQGRTYLVRRLDLEDSVAL 604
Query: 796 CQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWR 855
+ A Y T RD T + V G + +L + + VT F R
Sbjct: 605 VEDAVPPYSTTARDTTSVSVLGTD--IEVPWGDGRLCYGSVE-----VTHQVVSFLRRKL 657
Query: 856 GSGIIFDTVELYLPKYSYESQAVWIQVPQS-VKAVVEQNFSFRSGLHAASHALLHVVPIY 914
+G + +L LP ++AVW V +S + A LHAA HA + ++P++
Sbjct: 658 MTGEVLGETKLDLPPRILRTRAVWWTVTESQLDAARIAPEQLGGALHAAEHASIGLLPLF 717
Query: 915 VRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
C+ D+ H P + +YD HPGG G +++
Sbjct: 718 ATCDRWDIGGVSVPLHPDTGLPT-VFVYDGHPGGAGFAER 756
>gi|340628621|ref|YP_004747073.1| putative helicase [Mycobacterium canettii CIPT 140010059]
gi|433643835|ref|YP_007289594.1| Putative helicase [Mycobacterium canettii CIPT 140070008]
gi|340006811|emb|CCC46000.1| putative helicase [Mycobacterium canettii CIPT 140010059]
gi|432160383|emb|CCK57708.1| Putative helicase [Mycobacterium canettii CIPT 140070008]
Length = 771
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 247/740 (33%), Positives = 378/740 (51%), Gaps = 62/740 (8%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
HV ++ + P+ + A GIS +SHQAE+ + AG++VV+ T +S
Sbjct: 25 HVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPWSHQAEAAELAYAGRHVVIGTGPAS 84
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIG--VYDGD 339
GKSL Y LPVL AL+ D + ALY+ PTKAL DQLRA A+ A D+ YDGD
Sbjct: 85 GKSLAYQLPVLNALATDSRARALYLSPTKALGHDQLRAAHALAAAVPRLADVAPTAYDGD 144
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
+ + R + R+ +R L +NPDM H+S+L H +++ +L NLR
Sbjct: 145 SPDEVRRFARERSRWLFSNPDMTHLSVLRNHARWAVLLRNLR------------------ 186
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
FV++DE H Y+G FG + A++LRRL RLC+ Y + P+ +F++AT+A+P +L
Sbjct: 187 -FVIVDECHYYRGVFGSNVAMVLRRLLRLCAR-YSAHPTVIFASATTASPGATAADLIGQ 244
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
+E + DGSP + LW P+ LRS D+ A + S+ +E + + A
Sbjct: 245 PVVE-VTEDGSPRGARTVALWEPS--LRS-------DVIGEHGAPVRRSA-GAEAARVMA 293
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDF 579
+++ G + + F RSR+ EL R L + AP L D++ YRAGY+AEDR + +
Sbjct: 294 DLIVEGAQTLTFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQAL 353
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFE 639
G+L G+A TNALELG+D+ +D + GFPG++AS WQQAGRSGRR + +L V +A +
Sbjct: 354 AEGRLRGLATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARD 413
Query: 640 GPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSS 699
PLD Y + +P L P+E ID N +L L+CAA E PL D + G
Sbjct: 414 DPLDTYLVHHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLD---DAEVRSWGAVE 470
Query: 700 GITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEE 759
+L + G L + K F G + P + +R + +++ + +L
Sbjct: 471 VAESLVDDGLLRR-----RNGKYFPAPGVK--PHAAVDVRGAIGGQIVIVEAGTGRLLGS 523
Query: 760 IEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGN 819
+ +A + GAVY+HQG TY+V L+ IA D Y T R+ TDI V+G
Sbjct: 524 VGVGQAPAAAHPGAVYLHQGETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTG 583
Query: 820 NAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVW 879
+ + TVT G+ R + SG + D VEL +P+++ + AV
Sbjct: 584 E-------RLVFGPVALGLVPVTVTNHVVGYLRR-QLSGEVLDFVELDMPEHTLPTTAVM 635
Query: 880 IQVPQS--VKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPE 937
+ V++ +E LHAA HA + ++P+ C+ D+ + PE
Sbjct: 636 YTITSDALVRSGIEAT-RIPGSLHAAEHAAIGLLPLVASCDRGDI-----GGMSTATGPE 689
Query: 938 ---RILLYDRHPGGTGVSKQ 954
+ +YD +PGG G +++
Sbjct: 690 GLPSVFVYDGYPGGAGFAER 709
>gi|448562532|ref|ZP_21635490.1| ATP-dependent helicase [Haloferax prahovense DSM 18310]
gi|445718850|gb|ELZ70534.1| ATP-dependent helicase [Haloferax prahovense DSM 18310]
Length = 783
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 247/770 (32%), Positives = 377/770 (48%), Gaps = 59/770 (7%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
+++E LR +GQ+ AR+ ++ L S L+ GI +LY HQAE++
Sbjct: 3 DLIEWLRTRPYYEGQIRSHRRFEAREPAFADVD--LEPRLASTLEDRGIDRLYRHQAEAV 60
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLE-ALSHDLSSSALYMFPTKALAQDQLRAL--L 321
A G NVV+AT T+SGKSL Y +P E A+ H LY+ P AL DQL L L
Sbjct: 61 EAVRDGNNVVLATRTASGKSLAYTVPAFERAMDH--GGRTLYLGPQNALVADQLDTLSDL 118
Query: 322 AMTKAFDASIDIGVYDGDTTQKDRMWLRDN-ARLLITNPDMLHMSILPYHGQFSRILSNL 380
A F + + + Y G ++ ++ +R +L++NPDM+H ++LP+
Sbjct: 119 ARGLGFGSRVSVDQYTGRLSKSEKREVRKRMPTVLLSNPDMVHYALLPH---------AH 169
Query: 381 RLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFV 440
RL + F + VVIDE H Y+G FG H AL+LRRL R+C +GSDP FV
Sbjct: 170 RLWEW---------FFSSLETVVIDEVHGYRGVFGSHVALLLRRLKRVCER-FGSDPQFV 219
Query: 441 FSTATSANPREHCMELANL--STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMD 498
+AT NP EH + T L+ D S + ++LWNP + +
Sbjct: 220 CCSATIGNPVEHAARITGEREDTFALVDEDTSGTGETNWLLWNP----------PEYENP 269
Query: 499 DTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LV 557
+ + + S + E LF ++V G + +AF R+R+ E S + L H L
Sbjct: 270 EAGGSGRRRSGHV-ETKNLFVDLVARGHQTLAFTRARQAAERYASESASDLRSRGEHALA 328
Query: 558 DSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASL 617
I Y+A + RR IE G + GV +TNALELG+DVG +DV L G+PG+ S
Sbjct: 329 GEIAAYQASLTHDRRREIEAGLHDGDITGVWSTNALELGVDVGGLDVVLIDGYPGTRMSA 388
Query: 618 WQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVC 677
WQQAGR+GR +RP+L V V E LDQY + +P + F E D +N +L H+ C
Sbjct: 389 WQQAGRAGRGDRPALVVLVGGEDQLDQYLLNHPAEFFDGDPERAVSDPENDHLLPSHVAC 448
Query: 678 AALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTIS 737
AA E+ LS DE YFG ++ L+ G L+ + D + + + G E P H +S
Sbjct: 449 AAAENWLS-TGDESYFGGSFPGVVSGLEADGTLARRET-DEGLR-WTHDGSES-PQHAMS 504
Query: 738 IRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQ 797
+R I +++D +++E + + A + GAVY HQG TY V EL+L +A Q
Sbjct: 505 LRTITDREVQLMDSRNDETIATLAFDDALRDAHPGAVYHHQGQTYEVAELDLDRDVARLQ 564
Query: 798 KADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGS 857
Y+T+ D H++ + + +S + + T+ GF R
Sbjct: 565 PTWADYYTRV--LHDKHITVERDILSKPLST--WSDVEVRFAEVTMRKQITGFERRDPKR 620
Query: 858 GIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQ---------NFSFRSGLHAASHALL 908
G L LP+ S ++A++ VP V+A + + ++ F G+HAA H ++
Sbjct: 621 GTTIGQQLLDLPETSLRTKALYFTVPGDVEAEMRELSSDRAEGRDYGFNGGIHAAEHGMI 680
Query: 909 HVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDM 958
+ P+ + C+ D+ P+ S I +YD HPGG G+++ D+
Sbjct: 681 SLFPLRLLCDRGDIGG-LSTPYHSHTDQSTIFIYDGHPGGVGITRAGYDI 729
>gi|448540689|ref|ZP_21623610.1| ATP-dependent helicase [Haloferax sp. ATCC BAA-646]
gi|448548991|ref|ZP_21627767.1| ATP-dependent helicase [Haloferax sp. ATCC BAA-645]
gi|448555834|ref|ZP_21631763.1| ATP-dependent helicase [Haloferax sp. ATCC BAA-644]
gi|445708842|gb|ELZ60677.1| ATP-dependent helicase [Haloferax sp. ATCC BAA-646]
gi|445713680|gb|ELZ65455.1| ATP-dependent helicase [Haloferax sp. ATCC BAA-645]
gi|445717357|gb|ELZ69075.1| ATP-dependent helicase [Haloferax sp. ATCC BAA-644]
Length = 783
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 246/770 (31%), Positives = 375/770 (48%), Gaps = 59/770 (7%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
+++E LR +GQ+ AR+ + L SAL+ GI +LY HQAE++
Sbjct: 3 DLIEWLRTRPYYEGQIRSHRRFEAREPAFAGVD--LEPRLASALEDRGIDRLYRHQAEAV 60
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLE-ALSHDLSSSALYMFPTKALAQDQLRAL--L 321
A G NVV+AT T+SGKSL Y +P E A+ H LY+ P AL DQL L L
Sbjct: 61 EAVRDGDNVVLATRTASGKSLAYTVPAFERAMDH--GGRTLYLGPQNALVADQLDTLSEL 118
Query: 322 AMTKAFDASIDIGVYDGDTTQKDRMWLRDN-ARLLITNPDMLHMSILPYHGQFSRILSNL 380
A F + + + Y G ++ ++ +R +L++NPDM+H ++LP+
Sbjct: 119 ARGLGFGSRVSVDQYTGRLSKSEKRGVRKRMPTVLLSNPDMVHYALLPH---------AH 169
Query: 381 RLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFV 440
RL + F + VVIDE H Y+G FG H AL+LRRL R+C +G+DP FV
Sbjct: 170 RLWEW---------FFSSLETVVIDEVHGYRGVFGSHVALLLRRLKRVCER-FGADPQFV 219
Query: 441 FSTATSANPREHCMELAN--LSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMD 498
+AT NP EH + + L+ D S + ++LWNP + D
Sbjct: 220 CCSATIGNPVEHAARITGERADSFALVDEDASGTGETNWLLWNP----------PEYDNP 269
Query: 499 DTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LV 557
D + + S + E LF ++V G + +AF R+R+ E S + L H L
Sbjct: 270 DAGGSGRRRSGHV-ETKNLFVDLVARGHQTLAFTRARQAAERYASESASDLRSRGEHELA 328
Query: 558 DSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASL 617
+ Y+A + RR IE G + GV +TNALELG+DVG +DV L G+PG+ S
Sbjct: 329 GEVAAYQASLTHDRRREIEAGLHDGDIAGVWSTNALELGVDVGGLDVVLIDGYPGTRMSA 388
Query: 618 WQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVC 677
WQQAGR+GR +RP+L V V E LDQY M +P + F E D +N +L H+ C
Sbjct: 389 WQQAGRAGRGDRPALVVLVGGEDQLDQYLMHHPTEFFDGDPERAVSDPENDHLLPSHVAC 448
Query: 678 AALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTIS 737
AA E+ LS DE FG+ ++ L+ G L+ + D + + G E P H +S
Sbjct: 449 AAAENWLS-TEDESKFGASFPGVVSDLEADGTLARRETDD--GLRWTHDGSES-PQHAMS 504
Query: 738 IRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQ 797
+R I ++D +++E + + A + GAVY HQG TY V EL+L +A Q
Sbjct: 505 LRTITDREVRLMDSRNDETIATLAFDDALRDAHPGAVYHHQGQTYEVAELDLDRDVARLQ 564
Query: 798 KADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGS 857
Y+T+ D H++ + + +S + + T+ GF R
Sbjct: 565 PTWADYYTRV--LHDKHITVERDILSKPLSA--RSDVEVRFAEVTMRKQITGFERRDPKR 620
Query: 858 GIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQ---------NFSFRSGLHAASHALL 908
G L LP+ S ++A++ VP V+A + + ++ F G+HAA H ++
Sbjct: 621 GTTIGQQPLDLPETSLRTKALYFTVPGDVEAEMRELSSDRPEGRDYGFDGGIHAAEHGMI 680
Query: 909 HVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDM 958
+ P+ + C+ D+ P+ + I +YD HPGG G+++ D+
Sbjct: 681 SLFPLRLLCDRGDIG-GLSTPYHAHTDQSTIFIYDGHPGGVGITRAGYDI 729
>gi|392410851|ref|YP_006447458.1| helicase family protein with metal-binding cysteine cluster
[Desulfomonile tiedjei DSM 6799]
gi|390623987|gb|AFM25194.1| helicase family protein with metal-binding cysteine cluster
[Desulfomonile tiedjei DSM 6799]
Length = 1021
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 235/742 (31%), Positives = 387/742 (52%), Gaps = 70/742 (9%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+ H E I +K L I + + + LKS+G +KLYSHQAES+ +L ++VV+ T T
Sbjct: 19 LCHHEIIPEKKPDLRPILEGIHPDVIRLLKSSGFTKLYSHQAESVSLALQKQDVVLCTST 78
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGD 339
+SGK+L Y +P+L+ L + + +L++FP KAL +DQ + L++ K D+ + GVYDGD
Sbjct: 79 ASGKTLSYQIPILDTLVRNPDARSLFLFPLKALERDQKDSFLSIAK--DSGLSAGVYDGD 136
Query: 340 TTQKDRMWLR-DNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLF 398
T + +R +R R+LITNPDMLH+ +L +H + NL
Sbjct: 137 TPEAERRKIRMQPPRVLITNPDMLHLGLLAFHETWKEFFGNLT----------------- 179
Query: 399 IRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELAN 458
+V+DE H YKG FG H + +L R+ R+C +YGS+P F +AT ANP L
Sbjct: 180 --HIVLDEVHTYKGIFGSHISQVLLRVLRVC-RLYGSNPLFFTCSATIANPAVLMNRLTG 236
Query: 459 LSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLF 518
++ G+P + + F+L +P S SP + + +F
Sbjct: 237 -RDFRVVDVSGAPSSDRHFLLVDPVS------------------------SPYTAAAEMF 271
Query: 519 AEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERD 578
A ++ GL+ I F ++RK+ EL+ TR +L+ + PHL I YRAG++ E+RR IE
Sbjct: 272 AAALKCGLKTIVFTKARKITELI---TRWVLQ-SNPHLKSRISSYRAGFLPEERREIESK 327
Query: 579 FFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAF 638
F G++ GV +T+ALE+GIDVG +D+ + +G+PG+I + WQ+ GR GR RPS V +A
Sbjct: 328 LFSGEMDGVISTSALEMGIDVGGLDLCILVGYPGTIINTWQRGGRVGRAGRPSAIVLLAG 387
Query: 639 EGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFG-SGL 697
LD+YF++ P LF+ E +D N +VL++H+ CAA E+P+S E++ G +
Sbjct: 388 HDALDKYFLRNPTDLFRRNCEEAILDPYNKEVLKKHIPCAASENPIS--PQEEWIGLDEI 445
Query: 698 SSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVL 757
+ + L++ G L P + + K P T+ +R I + + + + ++
Sbjct: 446 RNVLDELEDEGILYR-PHAEGP-----WFSSAKRPHRTVDLRGIGTS-FPIFLDGTKSLI 498
Query: 758 EEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSG 817
+ F + +EGAVY+H+ YLV L+L KI L + L Y+T+ D +
Sbjct: 499 GNSAGKRVFTECHEGAVYLHKAREYLVTRLDLERKIILVKPERLNYYTRALSEKDTEI-- 556
Query: 818 GNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQA 877
+ ++ + VT + + S + +L LP +E+
Sbjct: 557 ----LRAPLRSNEFPGYIVREANLKVTERIHSYEKRRVSSQELISVTDLELPPLHFETVG 612
Query: 878 VWIQVPQSVKAVVE-QNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFP 936
+WI++P++V+ ++ + FSF G+HA HA + + P++ C+ D+ P +
Sbjct: 613 IWIEIPETVRTFIQDRGFSFMGGIHAMEHAAISMFPLFALCDRDDIG-GISTPDHPQVCK 671
Query: 937 ERILLYDRHPGGTGVSKQVTDM 958
+ +YD HPGG G+S + D+
Sbjct: 672 PAVFIYDGHPGGVGLSHRAFDI 693
>gi|389817690|ref|ZP_10208283.1| ATP-dependent helicase yprA [Planococcus antarcticus DSM 14505]
gi|388464458|gb|EIM06789.1| ATP-dependent helicase yprA [Planococcus antarcticus DSM 14505]
Length = 756
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 242/773 (31%), Positives = 393/773 (50%), Gaps = 80/773 (10%)
Query: 198 KSQLLPLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLY 257
K + LP ++E + ++VH + A E P + + K+AL+ GI ++Y
Sbjct: 3 KRKTLP-ALMEEWKTEPDMMERIVHWHTRQEKSAQYAEFPPEMHSSLKAALRKKGIEQVY 61
Query: 258 SHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQL 317
+HQ E+ + AG + T T+SGKS CY+LPVL + +D + ALY+FPTKALAQDQ
Sbjct: 62 THQREAFDLATAGNSFTAVTPTASGKSYCYHLPVLHKILNDPGARALYLFPTKALAQDQK 121
Query: 318 RALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRIL 377
L + + + +I YDGDT+ R +R ++++TNPDMLH +ILP+H ++ +
Sbjct: 122 SDLHDLIEKTEEAILSYTYDGDTSPAIRTKVRKAGQIVMTNPDMLHSAILPHHTKWVSLF 181
Query: 378 SNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDP 437
NL ++VIDE H YKG FG H A ++RRL R+C YGS+P
Sbjct: 182 ENL-------------------HYIVIDELHTYKGIFGTHVAHVIRRLKRICK-FYGSNP 221
Query: 438 SFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDM 497
F+ ++AT ANP+E L N S+ +LI +G+P +K V +NP +
Sbjct: 222 VFICTSATIANPKELAENLTN-SSHKLIDQNGAPSGKKHIVFYNPPIIHPTF-------- 272
Query: 498 DDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLV 557
R +A + EV L ++++G++ I F +SR E++++Y + I +
Sbjct: 273 -GVRRSA------VLEVRDLATHLIKNGIQTIVFAKSRVRVEMLVTYLQAITKMKLQD-- 323
Query: 558 DSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASL 617
DSI YR GY+ +RR IE+ G + V +TNALELG+D+G + + G+PG+IAS
Sbjct: 324 DSIKGYRGGYLPTERRAIEKGLRDGSIKCVVSTNALELGVDIGQLQACIMTGYPGNIASA 383
Query: 618 WQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVC 677
WQQAGR+GRR+ SL +YVA LDQY + +PE L E I +N +L HL C
Sbjct: 384 WQQAGRAGRRQDESLVIYVAQSTALDQYIINHPEYLLDQSPEEARIHPENIIILMDHLKC 443
Query: 678 AALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTIS 737
A+ E P + D++Y + + L+ G L ++ + ++ ++ P+H IS
Sbjct: 444 ASFELPFRI--DDQYGEFEVQELLEYLQEEGVLV------RTSDRWHWMS-DRFPAHDIS 494
Query: 738 IRAIESERYEVIDMQ---SNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIA 794
+R+ E +ID V+ E++ A ++E A+Y+HQG + V+ L+ K A
Sbjct: 495 LRSASQENVVIIDQSVPADTRVIGEMDRFSAMTLLHEEAIYLHQGTQFQVEILDWEEKKA 554
Query: 795 LCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLW 854
++ D+ YFT ++ V + K K ++ +A T F R
Sbjct: 555 YVREVDVDYFTDANLAVELKVMSED-----KDKKMNGSEVFYGDIAVLAMPTIFKKIRFD 609
Query: 855 R----GSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFS---FRSGLHAASHAL 907
GSG I LP + + W+ + ++FS + A++A+
Sbjct: 610 SHDNIGSGPI------SLPAEELHTSSTWLSFTKP------EDFSEAELSDTMTGAAYAI 657
Query: 908 LHVVPIYVRCNFSD--LAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDM 958
+PI+V+C+ D + P+ +PH+ ++D +PGG G+S+++ D+
Sbjct: 658 ESFIPIFVQCDRRDVHVVPQVKSPHNDM---PSFFIHDSYPGGIGISERIYDL 707
>gi|424858924|ref|ZP_18282938.1| helicase [Rhodococcus opacus PD630]
gi|356661433|gb|EHI41744.1| helicase [Rhodococcus opacus PD630]
Length = 787
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 249/751 (33%), Positives = 379/751 (50%), Gaps = 68/751 (9%)
Query: 217 QGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVA 276
+ + ++ AR + L E P + A++ GI + ++HQA + + G NVVV+
Sbjct: 34 ENPLTFAAEMPARTSRLSEWPTWAHPSVVRAMQENGIPRPWTHQAAAADLARHGTNVVVS 93
Query: 277 TMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAM--TKAFDASIDIG 334
T T+SGKSL Y LPVL L+ D ++ALY+ PTKAL DQLRA+ ++ ++ DA D+
Sbjct: 94 TGTASGKSLAYQLPVLTTLATDPRATALYLSPTKALGADQLRAVTSLIDSEVLDAGDDLR 153
Query: 335 -----VYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVT 389
V+DGDT + R W R+N+R L TNPDMLH+S+L H +++ NL
Sbjct: 154 GVCPCVFDGDTPLEVRHWARENSRWLFTNPDMLHISLLRTHQRWAHFFRNLA-------- 205
Query: 390 TEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANP 449
+VVIDE H+Y+G FG + AL+LRRL R+ + YG++P FV ++AT+A+P
Sbjct: 206 -----------YVVIDECHSYRGVFGSNVALVLRRLRRIAA-RYGAEPVFVLASATTADP 253
Query: 450 REHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSS 509
L E+++ DGSP + LW P +R V ++ + + R A
Sbjct: 254 GAAASRLIGAPCAEVVE-DGSPHGPRTVALWEP-PLMREVTGENGSPV---RRPAG---- 304
Query: 510 PISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVA 569
SE + + A+++ G R + F RSR+ EL T+ +L E P L + YRAGY+A
Sbjct: 305 --SEAARIMADLMVEGARTLTFVRSRRGAELTAMATKRLLGEIDPELSARVASYRAGYLA 362
Query: 570 EDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRER 629
EDRR +E G L G A TNALELG+D+ +D + GFPG++AS WQQ GRSGRR
Sbjct: 363 EDRRELEAALADGTLLGAATTNALELGVDIAGLDAVVVAGFPGTVASFWQQGGRSGRRGE 422
Query: 630 PSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYD 689
SL V VA + PLD Y + +P L P+E D N VL L+CAA+E PLS
Sbjct: 423 GSLVVLVARDDPLDTYLVHHPSALLDKPVEATVTDPSNPYVLGPQLLCAAMELPLSDAEA 482
Query: 690 EKY-----FGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESE 744
E + G G+ + G+ ++ P + IR
Sbjct: 483 EAFGAIDVLGKLAEQGLIRRRAHGW---------------FVTAGTNPHGAVDIRGGIGT 527
Query: 745 RYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYF 804
+ ++ +S +L ++ +A + GAV++HQG +Y+V EL+L +AL D +
Sbjct: 528 QVAIVVSESGRMLGTVDTGRAPATAHPGAVHIHQGESYVVDELDLDQGLALVHAEDPDWT 587
Query: 805 TKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTV 864
T R+ T+I V+ + + + Q + VT G+ R SG + D V
Sbjct: 588 TSARETTEITVT-------SVLEQKQFGDVEVALVEVEVTHQVIGYLRRLS-SGEVLDAV 639
Query: 865 ELYLPKYSYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLA 923
EL +P+ + ++AV + P+ + LHAA HA + ++P+ C+ D+
Sbjct: 640 ELDMPRQTLPTRAVMYTITPELLLQAGVPAERVPGSLHAAEHAAIGLLPLVAVCDRGDIG 699
Query: 924 PECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
H P + +YD H GG G + +
Sbjct: 700 GVSTALHADTGLPT-VFVYDGHAGGAGFADR 729
>gi|118465087|ref|YP_879796.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium avium 104]
gi|118166374|gb|ABK67271.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium avium 104]
Length = 776
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 249/751 (33%), Positives = 369/751 (49%), Gaps = 79/751 (10%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
HV ++ R + P A + GI +SHQ + + +G++VVV+T T+S
Sbjct: 25 HVAELPPRSGRPHDWPAWAEPEVVGAFAARGIKSPWSHQFTAADLAWSGRHVVVSTGTAS 84
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIG------V 335
GKSL Y LP L AL+ D + LY+ PTKAL DQLRA A+T A + G
Sbjct: 85 GKSLAYQLPALNALATDPRARVLYLSPTKALGHDQLRAAHALTAAIPRLREPGFAVAPTA 144
Query: 336 YDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLI 395
YDGD+ + R + R+ +R + +NPDM+H+S L H +++ +L LR
Sbjct: 145 YDGDSPTEVRRFARERSRWVFSNPDMIHLSTLRNHARWAVLLRGLR-------------- 190
Query: 396 FLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCME 455
FV++DE H Y+G FG H A++LRRL RLC+ Y S P+ +F++AT+ +P E
Sbjct: 191 -----FVIVDECHYYRGVFGSHVAMVLRRLLRLCAR-YASAPAVIFASATTDSPGATAAE 244
Query: 456 LANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVS 515
L L E+ + DGSP + LW P LR+ L N A S E +
Sbjct: 245 LIGLPVREVTE-DGSPQGARTVALWEP--ALRADLVGE--------NGAPVRRSAGGEAA 293
Query: 516 YLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRI 575
+ A+++ G + + F RSR+ EL + L+E AP L + YRAGY+AEDR +
Sbjct: 294 RVMADLIAEGAQTLTFVRSRRAAELTALGAQARLDEIAPELSAQVASYRAGYLAEDRTAL 353
Query: 576 ERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVY 635
ER G+L G+A TNALELG+D+ +D + GFPG++AS WQQAGRSGRR + +L V
Sbjct: 354 ERALAEGRLRGLATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVL 413
Query: 636 VAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLI----YDEK 691
+A + PLD Y + P L P+E ID +N +L L+CAA E PL D
Sbjct: 414 IARDDPLDTYLVHNPAALLGKPVERVVIDPRNPYILGPQLLCAATELPLQEAEVRELDAT 473
Query: 692 YFGSGL-SSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVID 750
GL G+ +N Y + P L P + IR + +++
Sbjct: 474 EVAEGLVDDGLLRRRNGKYFPA-PGL--------------QPHAAVDIRGAGGQ-VVILE 517
Query: 751 MQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDY 810
+ +L +A V+ GAVY+HQG +Y+V L+L IA D Y T R+
Sbjct: 518 ADTGRLLGSAGAGQAPASVHPGAVYLHQGESYVVDSLDLQEGIAFVHAEDPGYATFAREI 577
Query: 811 TDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPK 870
TDI V+G + T + VT G+ R R SG + D +EL +P+
Sbjct: 578 TDIAVTGAGE-------RLVFGPVTLGLVPVRVTHRVVGYLRR-RLSGEVIDFIELDMPE 629
Query: 871 YSYESQAVWIQVPQSVKAVVEQNFS---FRSGLHAASHALLHVVPIYVRCNFSDLA---- 923
++ + A + + +A+ + LHAA HA + ++P+ C+ D+
Sbjct: 630 HTLATTAAMYTITE--EALRDNGIDGPRIPGSLHAAEHAAIGLLPLVASCDRGDIGGLST 687
Query: 924 PECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
P P P + +YD HPGG G +++
Sbjct: 688 AAGPEPAG---LPS-VFVYDGHPGGAGFAER 714
>gi|448624509|ref|ZP_21670457.1| ATP-dependent helicase [Haloferax denitrificans ATCC 35960]
gi|445749714|gb|EMA01156.1| ATP-dependent helicase [Haloferax denitrificans ATCC 35960]
Length = 783
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 245/771 (31%), Positives = 378/771 (49%), Gaps = 61/771 (7%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
+++E LR +GQ+ AR+ ++ L SAL GI +LY HQAE++
Sbjct: 3 DLIEWLRTRPYYEGQIRSHRRFEAREPAFADVD--LEPRLASALDDRGIDRLYRHQAEAV 60
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLE-ALSHDLSSSALYMFPTKALAQDQLRAL--L 321
A G NVV+AT T+SGKSL Y +P E A+ H LY+ P AL DQL L L
Sbjct: 61 EAVRGGNNVVLATRTASGKSLAYTVPAFERAMDH--GGRTLYLGPQNALVADQLDTLSDL 118
Query: 322 AMTKAFDASIDIGVYDGDTTQKDRMWLRDN-ARLLITNPDMLHMSILPYHGQFSRILSNL 380
A F + + + Y G ++ ++ +R +L++NPDM+H ++LP+
Sbjct: 119 ARGLGFGSRVSVDQYTGRLSKSEKREVRKRMPTVLLSNPDMVHYALLPH---------AH 169
Query: 381 RLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFV 440
RL + F + VVIDE H Y+G FG H AL++RRL R+C +G+DP FV
Sbjct: 170 RLWEW---------FFSSLETVVIDEVHGYRGVFGSHVALLVRRLKRVCER-FGADPQFV 219
Query: 441 FSTATSANPREHCMELANL--STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMD 498
+AT NP EH + + L+ D S + ++LWNP + D
Sbjct: 220 CCSATIGNPVEHAARITGEREDSFTLVDEDASGTGETNWLLWNP----------PEYDNP 269
Query: 499 DTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LV 557
D + + S + E LF ++V G + +AF R+R+ E + + L H L
Sbjct: 270 DAGGSGRRRSGHV-ETKNLFVDLVARGHQTLAFTRARQAAERYATESASDLRSRGEHELA 328
Query: 558 DSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASL 617
+ Y+A + RR IE G + GV +TNALELG+DVG +DV L G+PG+ S
Sbjct: 329 GEVAAYQASLTHDRRREIEAGLHDGDITGVWSTNALELGVDVGGLDVVLIDGYPGTRMSA 388
Query: 618 WQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVC 677
WQQAGR+GR +RP+L V V E LDQY M +P + F E D +N +L H+ C
Sbjct: 389 WQQAGRAGRGDRPALVVLVGGEDQLDQYLMNHPAEFFDGDPERAVSDPENDHLLPSHVAC 448
Query: 678 AALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTIS 737
AA E+ LS DE +FG ++ L+ G L+ + D + + G E P H +S
Sbjct: 449 AAAENWLS-TGDESHFGGSFPGVVSDLEADGTLARRETDDGLR--WTHDGSES-PQHAMS 504
Query: 738 IRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQ 797
+R I +++D +++E + + A + GAVY HQG TY V EL+L +A Q
Sbjct: 505 LRTITDREVQLMDSRNDETIATLAFDDALRDAHPGAVYHHQGQTYEVAELDLDRDVARLQ 564
Query: 798 KADLKYFTKTRDYTDIHVSGGNNAYATKIS-KDQLTKTTAQALACTVTTTWFGFYRLWRG 856
Y+T+ D H++ + + +S +D + A+ T+ GF R
Sbjct: 565 PTWADYYTRV--LHDKHITVERDILSKPLSARDDVEVRFAE---VTMRKQITGFERRDPK 619
Query: 857 SGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQ---------NFSFRSGLHAASHAL 907
G L LP+ S ++A++ VP V+ + + ++ F G+HAA H +
Sbjct: 620 RGTTIGQQLLDLPETSLRTKALYFTVPGDVEREMRELSSDRPEGRDYGFNGGIHAAEHGM 679
Query: 908 LHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDM 958
+ + P+ + C+ D+ P+ + I +YD HPGG G+++ D+
Sbjct: 680 ISLFPLRLLCDRGDIG-GLSTPYHAHTDQSTIFIYDGHPGGVGITRAGYDI 729
>gi|328954574|ref|YP_004371908.1| hypothetical protein Desac_2928 [Desulfobacca acetoxidans DSM
11109]
gi|328454898|gb|AEB10727.1| Protein of unknown function DUF1998 [Desulfobacca acetoxidans DSM
11109]
Length = 977
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 241/743 (32%), Positives = 378/743 (50%), Gaps = 73/743 (9%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
H ++A+ A E P L +SAL + GI +LY HQ+ ++ GK+++VAT T+S
Sbjct: 28 HYHHLTAQAARYGEPPVNLSPQLRSALAAQGIEQLYHHQSVALDRLRIGKHILVATPTAS 87
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDA-SIDIGVYDGDT 340
GK+L YNLPV+ L +S ALY+FP KAL QDQL+ L A A + +YDGDT
Sbjct: 88 GKTLIYNLPVVATLLQKPNSCALYLFPLKALEQDQLKTLEEFKAALPAPAFTAAIYDGDT 147
Query: 341 TQKDRMWLRDNA-RLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
+ R LR N ++LI+NPDMLH+++LPYH + S L+
Sbjct: 148 PPEVRKQLRLNPPQILISNPDMLHLALLPYHESWRGFFSRLK------------------ 189
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
FV+IDE H YKG G H A +LRRL R+C + YGS+P ++ ++AT ANP E ++L
Sbjct: 190 -FVIIDEVHTYKGILGSHMAQVLRRLARICRY-YGSNPQYILASATIANPEELAVKLTG- 246
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
+E+I G+P + + F+ NP S S + + LF
Sbjct: 247 QEVEVISESGAPLSGRHFLFINPDS------------------------SSAALAARLFV 282
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDF 579
++ GL I F ++RK+ EL+ + AP L I YRAG++ E+RR IE+
Sbjct: 283 HSLRQGLATICFTQARKITELMHLWALR----QAPDLKKLISSYRAGFLPEERREIEQRL 338
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFE 639
GK+ GV +T+ALE+GID+G +DV + +G+PG++ + WQ++GR GR + SL + VA
Sbjct: 339 AHGKMLGVISTSALEMGIDIGGLDVCILVGYPGTMVTAWQRSGRVGRWGQDSLVLLVAQP 398
Query: 640 GPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSS 699
LDQYFM +P + F E +D N V+ HL CAA E PL + + +
Sbjct: 399 DALDQYFMVHPAEFFSRHFEAAVLDPHNPYVVRAHLPCAAQELPLKRATESVFDLAAAGE 458
Query: 700 GITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEE 759
I TL+ L + D A + + P ++IR I + + + S +
Sbjct: 459 LIATLEQERRLLR--AADGEA----WYASARFPQKEVNIRGI-GQSLAIFKVGSRRAIGA 511
Query: 760 IEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTK--TRDYTDIHVSG 817
I+ +A + + GA+Y+H+ +YLV++L+L + + + +YFT+ T T+I
Sbjct: 512 IDGHRALTECHPGAIYLHKATSYLVEKLDLERRNVWVKPVEPQYFTRIQTEKETEILEEF 571
Query: 818 GNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGI-IFDTVELYLPKYSYESQ 876
G+ + A K T + LA Y R G + V L LP +E+
Sbjct: 572 GSRSSAAFTVHLGRLKVTQRILA----------YEKRRLVGQELLGIVPLELPPQIFETV 621
Query: 877 AVWIQVPQSVK-AVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYF 935
+W+++ +K AV + F G+HA HAL+ + P++ + D+ +P +
Sbjct: 622 GMWLEISDVIKNAVADAGRHFMGGIHALEHALISMFPLFALADRYDIG-GISHPLHVQLG 680
Query: 936 PERILLYDRHPGGTGVSKQVTDM 958
+ +YD +PGG G++ + +M
Sbjct: 681 KAAVFIYDGYPGGVGLAARAYEM 703
>gi|289524205|ref|ZP_06441059.1| ATP-dependent helicase, DEAD/DEAH box family [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289502861|gb|EFD24025.1| ATP-dependent helicase, DEAD/DEAH box family [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 767
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 247/776 (31%), Positives = 397/776 (51%), Gaps = 68/776 (8%)
Query: 190 SFQRRCSDKSQLL-PLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSAL 248
+F RC L+ ++ E L+ G++ E I A++A P + +L
Sbjct: 3 NFNWRCISLEALMHKKDLTEFLKTLQILPGEIAAYEKIPAQEAKFGPWPK-IDPRLSESL 61
Query: 249 KSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFP 308
K GI KLY+HQ ++I ++A K++VV T T+SGK+LCYN+PV+ ++ D SS +LY+FP
Sbjct: 62 KKLGIEKLYTHQTKAIDLAMANKHLVVVTPTASGKTLCYNIPVIHSILQDQSSRSLYIFP 121
Query: 309 TKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILP 368
TKAL+QDQL + A+T+ D SI YDGDT +R +R ++ITNPDMLH +ILP
Sbjct: 122 TKALSQDQLAEINAITEGIDVSIATYTYDGDTPPNERSRIRAAGHVVITNPDMLHTAILP 181
Query: 369 YHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRL 428
+H ++ ++ NL ++VVIDE H YKG FG H A ++RRL R+
Sbjct: 182 HHTKWIKLFENL-------------------KYVVIDELHTYKGIFGSHLANVIRRLKRI 222
Query: 429 CSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRS 488
C+ YGS P+F+F +AT +NP + L +ELI +G+P A+K +++NP
Sbjct: 223 CA-FYGSHPTFIFCSATISNPGQLAEGLIE-EPVELIAENGAPRAEKHVMIYNP-----P 275
Query: 489 VLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREI 548
++NK +S IS + + + + +G+ I F RSR EL+L+Y RE
Sbjct: 276 LINK----------GLGIRASSISATADIATQAIANGISTIVFTRSRINVELLLTYIREG 325
Query: 549 LEETAPHLVDSICV--YRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTL 606
L++ +D V YR GY+ ++RR+IER+ GK+ GV +TNALELGID+G + + +
Sbjct: 326 LKKLR---IDENLVSGYRGGYLPKERRKIERNLKSGKILGVVSTNALELGIDIGSLSLAI 382
Query: 607 HLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQ 666
G+PGSI+S WQQ GR+GRR S A+ VA GPLDQ+ P F E I+
Sbjct: 383 IHGYPGSISSAWQQIGRAGRRFGHSAAIVVASSGPLDQFIATKPSYFFGGSPELARINPN 442
Query: 667 NHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYI 726
N + H+ C+A E P S +++ FGS + YL+ L + + +
Sbjct: 443 NLYIYVNHVKCSAFELPFS---EDEPFGS-----TKPKEALEYLAQYDILHKAGSRY-FW 493
Query: 727 GHEKMPSHTISIRAIESERYEVIDMQSN---EVLEEIEESKAFFQVYEGAVYMHQGHTYL 783
+ P+ IS+R+ ++ Y +ID+ +V+ E++ A ++ A+Y H G +Y
Sbjct: 494 QSDSFPAQDISLRSATNDNYTIIDITEKHKPKVIGEVDRPSAPMLIHPEAIYFHDGKSYQ 553
Query: 784 VKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTV 843
V EL+ + + Y+T T + V I K+ + L +
Sbjct: 554 VTELDTKGLRCYVKGVSVDYYTDADLATRLQV--------LDIFKEDGHWGLGEVL-LSF 604
Query: 844 TTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAA 903
T + +L + + ++Y+ + + A W ++ + + ++F SGL
Sbjct: 605 RPTVYKKIKLMTHENVGYG--QIYMDEEEMHTTACWFKLGKEFTDSLNESF-LSSGLLGV 661
Query: 904 SHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDMK 959
SH + V P+++ C+ D+ D + I + D PGG G++ +K
Sbjct: 662 SHLMRVVAPLFLMCDRGDIRVHH-MVRDPFFETPSIYIADNVPGGVGLADGAFALK 716
>gi|292655850|ref|YP_003535747.1| ATP-dependent helicase [Haloferax volcanii DS2]
gi|448289837|ref|ZP_21481000.1| ATP-dependent helicase [Haloferax volcanii DS2]
gi|291372385|gb|ADE04612.1| ATP-dependent helicase [Haloferax volcanii DS2]
gi|445581354|gb|ELY35715.1| ATP-dependent helicase [Haloferax volcanii DS2]
Length = 783
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 245/770 (31%), Positives = 378/770 (49%), Gaps = 59/770 (7%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
+++E LR +GQ+ AR+ + L SAL+ GI +LY HQAE++
Sbjct: 3 DLIEWLRTRPYYEGQIRSHRRFEAREPAFAGVD--LEPRLASALEDRGIDRLYRHQAEAV 60
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLE-ALSHDLSSSALYMFPTKALAQDQLRAL--L 321
A G NVV+AT T+SGKSL Y +P E A+ H LY+ P AL DQL L L
Sbjct: 61 EAVRDGDNVVLATRTASGKSLAYTVPAFERAMDH--GGRTLYLGPQNALVADQLDTLSDL 118
Query: 322 AMTKAFDASIDIGVYDGDTTQKDRMWLRDN-ARLLITNPDMLHMSILPYHGQFSRILSNL 380
A F + + +G Y G ++ ++ +R +L++NPDM+H ++LP+
Sbjct: 119 ARGLGFGSRVSVGQYTGRLSKSEKREVRKRMPTVLLSNPDMVHYALLPH---------AH 169
Query: 381 RLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFV 440
RL + F + VVIDE H Y+G FG H AL++RRL R+C +G+DP FV
Sbjct: 170 RLWEW---------FFSSLETVVIDEVHGYRGVFGSHVALLIRRLKRVCER-FGADPQFV 219
Query: 441 FSTATSANPREHCMELANL--STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMD 498
+AT NP EH + + L+ D S + ++LWNP + +
Sbjct: 220 CCSATIGNPVEHAARITGEREDSFTLVDEDTSGTGETNWLLWNP----------PEYENP 269
Query: 499 DTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LV 557
D + + S + E LF ++V G + +AF R+R+ E S + L H L
Sbjct: 270 DAGGSGRRRSGHV-ETKNLFVDLVARGHQTLAFTRARQAAERYASESASDLRSRGEHDLA 328
Query: 558 DSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASL 617
+ Y+A + RR IE G + GV +TNALELG+DVG +DV L G+PG+ S
Sbjct: 329 GEVAAYQASLTHDRRREIEAGLHDGDIAGVWSTNALELGVDVGGLDVVLIDGYPGTRMSA 388
Query: 618 WQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVC 677
WQQAGR+GR +RP+L V V E LDQY M +P + F E D +N +L H+ C
Sbjct: 389 WQQAGRAGRGDRPALVVLVGGEDQLDQYLMNHPAEFFDGDPERAVSDPENDHLLPSHVAC 448
Query: 678 AALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTIS 737
AA E+ LS DE FG+ ++ L+ G L+ + D + + G E P H +S
Sbjct: 449 AAAENWLS-TEDESKFGAPFPGIVSDLEADGTLARRETDDGLR--WTHDGSES-PQHAMS 504
Query: 738 IRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQ 797
+R I +++D +++E++ + A + GAVY HQG TY V EL+L +A Q
Sbjct: 505 LRTITDREVQLMDSRNDEIIATLAFDDAIRDAHPGAVYHHQGQTYEVAELDLDRDVARLQ 564
Query: 798 KADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGS 857
Y+T+ D H++ + + +S + + T+ GF R
Sbjct: 565 PTWADYYTRV--LHDKHITVERDILSKPLSA--RSDVEVRFAEVTMRKQITGFERRDPKR 620
Query: 858 GIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQ---------NFSFRSGLHAASHALL 908
G L LP+ S ++A++ VP V++ + + ++ F G+HAA H L+
Sbjct: 621 GTTIGQQLLDLPETSLRTKALYFTVPGDVESEMRELSSDRAEGRDYGFNGGIHAAEHGLI 680
Query: 909 HVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDM 958
+ P+ + C+ D+ P+ + I +YD HPGG G+++ D+
Sbjct: 681 SLFPLRLLCDRGDIG-GLSTPYHAHTDQSTIFIYDGHPGGVGITRAGYDI 729
>gi|453054517|gb|EMF01969.1| helicase/secretion neighborhood DEAH-box helicase [Streptomyces
mobaraensis NBRC 13819 = DSM 40847]
Length = 740
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 247/716 (34%), Positives = 370/716 (51%), Gaps = 57/716 (7%)
Query: 247 ALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL------SHDLS 300
A+++ GI++ ++HQA +L G++ VVAT T+SGKSL Y PVL L +
Sbjct: 4 AIRAVGIARPWAHQALMAEHALRGESAVVATGTASGKSLAYLAPVLSTLLDGSEAPNGRG 63
Query: 301 SSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPD 360
++ALY+ PTKALA DQ RA+ + ++ VYDGDT ++R W+R A +TNPD
Sbjct: 64 ATALYLAPTKALAADQRRAVSELAAPLGKAVRPAVYDGDTPFEEREWVRQYANYALTNPD 123
Query: 361 MLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTAL 420
MLH SILP H +++ L LR +VV+DE H Y+G FG H A
Sbjct: 124 MLHRSILPSHPRWASFLRALR-------------------YVVVDECHTYRGVFGSHVAQ 164
Query: 421 ILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLW 480
+LRRL RLC+ YGS+P F+ ++AT++ P L + +E I +D SP + +F LW
Sbjct: 165 VLRRLRRLCAR-YGSEPVFLLASATASEPAAAASRLTGVPVVE-ITDDASPRGELVFALW 222
Query: 481 NPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCEL 540
P T++ R A + ++ +E + L ++ G+R +AF RSR+ EL
Sbjct: 223 EP----------PLTELHGERGAPVRRTA-TAETADLLTDLAVQGVRTVAFVRSRRGAEL 271
Query: 541 VLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVG 600
+ +E L L + YR GY+ E+RR IER G+L ++AT ALELG+DV
Sbjct: 272 IALIAQERLAAVDRSLPSRVAAYRGGYLPEERRAIERALHTGELLALSATTALELGVDVA 331
Query: 601 HIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIEC 660
+D + G+PG+ ASLWQQAGR+GRR + +LAV VA + PLD Y + +P+ LF+ P+E
Sbjct: 332 GLDAVVLTGYPGTRASLWQQAGRAGRRGQGALAVLVARDDPLDTYLVHHPDALFRQPVEA 391
Query: 661 CHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSA 720
+D N VL HL AA E PL+ D FG T L L
Sbjct: 392 TVLDPDNPYVLTPHLCAAAEELPLTEA-DLSLFGP------ETRSLLTRLELRKLLRRRG 444
Query: 721 KIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGH 780
+ + E+ T IR + +V++ + +L ++ S A V+EGAV++HQG
Sbjct: 445 SAWHWTRRERAADLT-GIRGEDGRPVQVVEEGTGRLLGTVDASAAHTTVHEGAVHLHQGR 503
Query: 781 TYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALA 840
+YLV+ L+L +AL ++AD Y T RD T I + +L + +
Sbjct: 504 SYLVRHLDLDDSVALVEEADPPYSTTARDTTSISIL--ETVREIPWGDARLCFGSVE--- 558
Query: 841 CTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVP--QSVKAVVEQNFSFRS 898
VT F R +G + +L LP + ++AVW V Q +A + Q +
Sbjct: 559 --VTNQVVSFLRRRLITGEVLGESKLDLPPRTLRTRAVWWTVTEDQLDEARIPQE-ALGG 615
Query: 899 GLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
LHAA HA + ++P++ C+ D+ H P + +YD HPGG G +++
Sbjct: 616 ALHAAEHASIGMLPLFATCDRWDIGGVSVPLHPDTLLPT-VFVYDGHPGGAGFAER 670
>gi|456012477|gb|EMF46165.1| ATP-dependent RNA helicase [Planococcus halocryophilus Or1]
Length = 756
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 242/776 (31%), Positives = 394/776 (50%), Gaps = 86/776 (11%)
Query: 198 KSQLLPLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLY 257
+ + LP+ ++E + ++VH + A + P + + K+AL+ GI +LY
Sbjct: 3 RRKTLPV-LMEEWKTEPDMMERIVHWHTRQEKPAQYADFPPEMHASLKAALRKKGIEQLY 61
Query: 258 SHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQL 317
+HQ E+ + AG + T T+SGKS CY+LPVL + +D + ALY+FPTKALAQDQ
Sbjct: 62 THQREAFDLAAAGNSFTAVTPTASGKSYCYHLPVLHKILNDPGARALYLFPTKALAQDQK 121
Query: 318 RALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRIL 377
L + + + I YDGDT+ R +R ++++TNPDMLH +ILP+H ++ +
Sbjct: 122 SDLHDLIEKTEEEILSYTYDGDTSPAIRTKVRKAGQIVMTNPDMLHSAILPHHTKWVSLF 181
Query: 378 SNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDP 437
NL ++VIDE H YKG FG H A ++RRL R+C YGS+P
Sbjct: 182 ENL-------------------HYIVIDELHTYKGIFGTHVAHVIRRLKRICE-FYGSNP 221
Query: 438 SFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDM 497
F+ ++AT ANP+E L N ST +LI +G+P +K V +NP +
Sbjct: 222 VFICTSATIANPKELAENLTN-STHKLIDQNGAPSGKKHIVFYNPPIIHPTF-------- 272
Query: 498 DDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLV 557
R +A I EV L ++++G++ I F +SR E++++Y + + +
Sbjct: 273 -GVRRSA------ILEVRDLATHLIKNGIQTIVFAKSRVRVEMLVTYLQAVTKMKLQD-- 323
Query: 558 DSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASL 617
DSI YR GY+ +RR IE+ G + V +TNALELG+D+G + + G+PG+IAS
Sbjct: 324 DSIKGYRGGYLPTERRAIEKGLRDGSIQCVVSTNALELGVDIGQLQACIMTGYPGNIASA 383
Query: 618 WQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVC 677
WQQAGR+GRR+ SL +YVA LDQY + +PE L E I +N +L HL C
Sbjct: 384 WQQAGRAGRRQDESLVIYVAQSTALDQYIINHPEYLLDQSPEEARIHPENIIILMDHLKC 443
Query: 678 AALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTIS 737
A+ E P + D++Y + + L+ G L ++ + ++ ++ P+H IS
Sbjct: 444 ASFELPFRV--DDQYGEFEVQELLEYLQEEGVLV------RTSNRWHWMS-DRFPAHDIS 494
Query: 738 IRAIESERYEVIDMQ---SNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIA 794
+R+ E +ID V+ E++ A ++E A+Y+HQG + V+ L+ K A
Sbjct: 495 LRSASQENVVIIDQSIPADTRVIGEMDRFSAMTLLHEEAIYLHQGTQFQVEILDWEEKKA 554
Query: 795 LCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTA---QALACTVTTTWFGFY 851
++ D+ YFT ++ V + KD++ + +A T F
Sbjct: 555 YVREVDVDYFTDANLAVELKVMSED--------KDKMMNKSEVFYGDIAVLAMPTIFKKI 606
Query: 852 RLWR----GSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFS---FRSGLHAAS 904
R GSG I LP + + W+ + ++FS + A+
Sbjct: 607 RFDSHDNIGSGPI------SLPAEELHTSSTWLSFSKP------EDFSEAELSDTMTGAA 654
Query: 905 HALLHVVPIYVRCNFSD--LAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDM 958
+A+ +PI+V+C+ D + P+ +PH+ ++D +PGG G+S+++ D+
Sbjct: 655 YAIESFIPIFVQCDRRDVHVVPQVKSPHNDM---PTFFIHDSYPGGIGISERIYDL 707
>gi|357020028|ref|ZP_09082263.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium thermoresistibile ATCC 19527]
gi|356480064|gb|EHI13197.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium thermoresistibile ATCC 19527]
Length = 728
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 245/715 (34%), Positives = 367/715 (51%), Gaps = 63/715 (8%)
Query: 252 GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKA 311
GI++ + HQA + + +G++VV++T T+SGKSL Y LP+L AL+ D + LY+ PTKA
Sbjct: 9 GITEPWEHQAVAADLAHSGRHVVLSTGTASGKSLAYQLPILSALAADPRARVLYLSPTKA 68
Query: 312 LAQDQLRALLAMTKAFD--ASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPY 369
L DQLRA +T A + A++ YDGD+ + R + R+ +R + +NPDM+H+++L
Sbjct: 69 LGHDQLRAAQELTGAVERLATVAPTAYDGDSPTEVRRFARERSRWIFSNPDMVHLAMLRN 128
Query: 370 HGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLC 429
HG+++ L +LR +VV+DE H Y+G FG + A++LRRL RLC
Sbjct: 129 HGRWAVFLRHLR-------------------YVVVDECHYYRGIFGSNVAMVLRRLLRLC 169
Query: 430 S-HVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRS 488
+ G P+ F++AT+A P + EL S E + +D SP + LW P L
Sbjct: 170 QRYSAGGSPTVFFASATTAAPADTASELIGQSVTE-VTDDASPHGARTIALWEP-PLLPD 227
Query: 489 VLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREI 548
++ + N A +E + + A++V G R + F RSR+ EL R
Sbjct: 228 LVGE---------NGAPVRRPAGAEAARVMADLVAEGARTLTFVRSRRGAELTALGARSR 278
Query: 549 LEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHL 608
LEE AP L + YRAGY+AEDRR +E+ G+L +A TNALELGID+ +D +
Sbjct: 279 LEEIAPELAQRVASYRAGYLAEDRRALEQALANGELRALATTNALELGIDIAGLDAVVLA 338
Query: 609 GFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNH 668
GFPG++ S WQQAGRSGRR + +L V +A + PLD Y + +P L PIE ID N
Sbjct: 339 GFPGTVTSFWQQAGRSGRRGQSALIVLIARDDPLDTYLVHHPSALLDRPIERVVIDPTNP 398
Query: 669 KVLEQHLVCAALEHPLSL----IYD-EKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIF 723
VL L+CAA E PL++ +D E+ S + G+ + GY S P +D
Sbjct: 399 HVLGPQLLCAAAELPLTIEEVRRWDAEEVAESLVDDGLLRRRASGYFPS-PGVD------ 451
Query: 724 EYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYL 783
P + IRA + +++ + +L +A V+ GAVY+HQG +YL
Sbjct: 452 --------PHPAVDIRAAAGGQIAIVETGTGRLLGSAGVGQAPASVHPGAVYLHQGESYL 503
Query: 784 VKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTV 843
V LN +A D Y T R+ TDI V+G + T + +V
Sbjct: 504 VDSLNFEEGVAFVHAEDPGYTTSAREITDISVTGVGE-------RKTFGPVTIGLVPVSV 556
Query: 844 TTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQV-PQSVKAVVEQNFSFRSGLHA 902
T T G+ R SG + D VEL +P + ++ AV + P+++ LHA
Sbjct: 557 TNTVTGYLRR-EMSGEVIDFVELDMPSRTLDTMAVMCTITPEALADNDIDPVRIPGSLHA 615
Query: 903 ASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTD 957
A HA + ++P+ C+ D+ P I +YD +PGG G + + D
Sbjct: 616 AEHAAIGLLPLVASCDRGDIGGVSTAVGPDSGLPT-IFVYDGYPGGAGFADRGFD 669
>gi|302530820|ref|ZP_07283162.1| helicase domain-containing protein [Streptomyces sp. AA4]
gi|302439715|gb|EFL11531.1| helicase domain-containing protein [Streptomyces sp. AA4]
Length = 1044
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 227/666 (34%), Positives = 345/666 (51%), Gaps = 55/666 (8%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+ HV + R A P+ + + +A +++G+ K + HQ E+ + AG +VVV+T T
Sbjct: 34 VTHVSRLPERAARHEPWPEWVEPSVVAAFRASGVEKPWRHQVEAASLAQAGTHVVVSTGT 93
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGD 339
+SGKSL Y LPVL AL+ + ++ALY+ PTKAL DQLRA+ ++ A + G +DGD
Sbjct: 94 ASGKSLAYQLPVLSALAANERATALYLSPTKALGADQLRAVSSLDIA---GVRAGAFDGD 150
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T +R W+R +A + +NPDMLH IL H ++++ F +
Sbjct: 151 TPMTERDWVRAHANWVFSNPDMLHRGILSAHSRWTQF-------------------FRRL 191
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
R+VV+DE H+Y+G FG H AL+LRRL R+ H YG+ P FV ++AT+A+P L +
Sbjct: 192 RYVVVDECHSYRGVFGSHVALLLRRLRRVAEH-YGASPVFVLASATTASPASFATRLTGV 250
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
I +D SP + LW P +L++ + N A E + +
Sbjct: 251 E-CTAITDDASPRGARTVALWEP-----PLLDELTGE-----NGAPVRRPAGVETARILT 299
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDF 579
E+V G R +AF RSR+ EL R +L E P L D++ YR+GY+ E+RR +E+
Sbjct: 300 ELVIEGARSLAFVRSRRGAELTALGARRLLSEVDPRLADTVAAYRSGYLPEERRALEQAL 359
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFE 639
G+L GVA TNALELG+D+ +D + G+PG++AS WQQ+GR+GR +L V+VA +
Sbjct: 360 LSGRLLGVATTNALELGVDIAGLDAVVLAGYPGTLASFWQQSGRAGRSGDEALVVFVARD 419
Query: 640 GPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSS 699
PLD Y + +P L + P+E +D N VL L CA E PL+ E + G +
Sbjct: 420 DPLDTYLVHHPAALLERPVETAVLDPTNPYVLGPQLACAVAELPLTEPELETFGGEAARA 479
Query: 700 GITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEE 759
+ L L S Y P + IR ++ V++ S +L
Sbjct: 480 VLADLAAEKLLRRRSS-------GWYWTSRDRPHADVGIRGSGGDQIAVVEADSGRMLGT 532
Query: 760 IEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGN 819
++ A + V+ GAVY+HQG +Y+V EL+L + +AL D + T R+ DI V
Sbjct: 533 VDPGSACYSVHPGAVYLHQGSSYVVDELDLETGLALVHAEDPDWTTSPREIVDISV---- 588
Query: 820 NAYATKISKDQLTKTTAQALA---CTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQ 876
+S ++ + + VT+ G+ R R SG + D L LP+ S ++
Sbjct: 589 ------LSTEEQCRHGGVTVCLGEVAVTSQVVGYLRR-RPSGEVLDHTPLDLPEQSLHTR 641
Query: 877 AVWIQV 882
AVW V
Sbjct: 642 AVWYTV 647
>gi|433636749|ref|YP_007270376.1| Putative helicase [Mycobacterium canettii CIPT 140070017]
gi|432168342|emb|CCK65878.1| Putative helicase [Mycobacterium canettii CIPT 140070017]
Length = 771
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 246/740 (33%), Positives = 377/740 (50%), Gaps = 62/740 (8%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
HV ++ + P+ + A GIS +SHQAE+ + AG++VV+ T +S
Sbjct: 25 HVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPWSHQAEAAELAYAGRHVVIGTGPAS 84
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIG--VYDGD 339
GKSL Y LPVL AL+ D + ALY+ PTKAL DQLRA A+ A D+ YDGD
Sbjct: 85 GKSLAYQLPVLNALATDSRARALYLSPTKALGHDQLRAAHALAAAVPRLADVAPTAYDGD 144
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
+ + R + R+ +R L +NPDM H+S+L H +++ +L NLR
Sbjct: 145 SPDEVRRFARERSRWLFSNPDMTHLSVLRNHARWAVLLRNLR------------------ 186
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
FV++DE H Y+G FG + A++LRRL RLC+ Y + P+ +F++AT+A+P +L
Sbjct: 187 -FVIVDECHYYRGVFGSNVAMVLRRLLRLCAR-YSAHPTVIFASATTASPGATAADLIGQ 244
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
+E + DGSP + LW P+ LRS D+ A + S+ +E + + A
Sbjct: 245 PVVE-VTEDGSPRGARTVALWEPS--LRS-------DVIGEHGAPVRRSA-GAEAARVMA 293
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDF 579
+++ G + + F RSR+ EL R L + AP L D++ YRAGY+AEDR + +
Sbjct: 294 DLIVEGAQTLTFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQAL 353
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFE 639
G+L G+A TNALELG+D+ +D + GFPG++AS WQQAGRSGRR + +L V +A +
Sbjct: 354 AEGRLRGLATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARD 413
Query: 640 GPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSS 699
PLD Y + +P L P+E ID N +L L+CAA E PL + G
Sbjct: 414 DPLDTYLVHHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLDSAEVRSW---GAVE 470
Query: 700 GITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEE 759
+L + G L + K F G + P + +R + +++ + +L
Sbjct: 471 VAESLVDDGLLRR-----RNGKYFPAPGVK--PHAAVDVRGAIGGQIVIVEAGTGRLLGS 523
Query: 760 IEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGN 819
+ +A + GAVY+HQG TY+V L+ IA D Y T R+ TDI V+G
Sbjct: 524 VGVGQAPAAAHPGAVYLHQGETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTG 583
Query: 820 NAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVW 879
+ + TVT G+ R + SG + D VEL +P+++ + AV
Sbjct: 584 E-------RLVFGPVALGLVPVTVTNHVVGYLRR-QLSGEVLDFVELDMPEHTLPTTAVM 635
Query: 880 IQVPQS--VKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPE 937
+ V++ +E LHAA HA + ++P+ C+ D+ + PE
Sbjct: 636 YTITSDALVRSGIEAT-RIPGSLHAAEHAAIGLLPLVASCDRGDI-----GGMSTATGPE 689
Query: 938 ---RILLYDRHPGGTGVSKQ 954
+ +YD +PGG G +++
Sbjct: 690 GLPSVFVYDGYPGGAGFAER 709
>gi|448585326|ref|ZP_21647719.1| ATP-dependent helicase [Haloferax gibbonsii ATCC 33959]
gi|445726026|gb|ELZ77643.1| ATP-dependent helicase [Haloferax gibbonsii ATCC 33959]
Length = 783
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 245/770 (31%), Positives = 375/770 (48%), Gaps = 59/770 (7%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
+++E LR +GQ+ AR+ ++ L SAL+ GI +LY HQAE++
Sbjct: 3 DLIEWLRTRPYYEGQIRSHRRFEAREPAFADVD--LEPRLASALEDRGIDRLYRHQAEAV 60
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLE-ALSHDLSSSALYMFPTKALAQDQLRAL--L 321
A G N V+AT T+SGKSL Y +P E A+ H LY+ P AL DQL L L
Sbjct: 61 EAVRDGNNAVLATRTASGKSLAYTVPAFERAMDH--GGRTLYLGPQNALVADQLDTLSDL 118
Query: 322 AMTKAFDASIDIGVYDGDTTQKDRMWLRDN-ARLLITNPDMLHMSILPYHGQFSRILSNL 380
A F + + + Y G ++ ++ +R +L++NPDM+H ++LP+
Sbjct: 119 ARGLGFGSRVSVDQYTGRLSKSEKREVRKRMPTVLLSNPDMVHYALLPH---------AH 169
Query: 381 RLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFV 440
RL + F + VVIDE H Y+G FG H AL+LRRL R+C +GSDP FV
Sbjct: 170 RLWEW---------FFSSLETVVIDEVHGYRGVFGSHVALLLRRLKRVCER-FGSDPQFV 219
Query: 441 FSTATSANPREHCMELANL--STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMD 498
+AT NP EH + + L+ D S + ++LWNP + +
Sbjct: 220 CCSATIGNPVEHAARITGEREDSFALVDEDTSGTGETNWLLWNP----------PEYENP 269
Query: 499 DTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LV 557
+ + + S + E LF ++V G + +AF R+R+ E S + L H L
Sbjct: 270 EAGGSGRRRSGHV-ETKNLFVDLVARGHQTLAFTRARQAAERYASESASDLRSRGEHALA 328
Query: 558 DSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASL 617
I Y+A + RR IE G + GV +TNALELG+DVG +DV L G+PG+ S
Sbjct: 329 GEIAAYQASLTHDRRREIEAGLHDGDITGVWSTNALELGVDVGGLDVVLIDGYPGTRMSA 388
Query: 618 WQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVC 677
WQQAGR+GR +RP+L V V E LDQY + +P + F E D +N +L H+ C
Sbjct: 389 WQQAGRAGRGDRPALVVLVGGEDQLDQYLLNHPAEFFDGDPERAVSDPENDHLLPSHVAC 448
Query: 678 AALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTIS 737
AA E+ LS DE YFG ++ L+ G L+ + D + + G E P H +S
Sbjct: 449 AAAENWLS-TGDESYFGGSFPGVVSDLEADGTLARRETDD--GLRWTHDGSES-PQHAMS 504
Query: 738 IRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQ 797
+R I +++D +++E + + + GAVY HQG TY V EL+L +A Q
Sbjct: 505 LRTITDREVQLMDTRNDETIATLAFDDVLRDAHPGAVYHHQGQTYEVAELDLDRDVARLQ 564
Query: 798 KADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGS 857
Y+T+ D H++ + + +S + + T+ GF R
Sbjct: 565 PTWADYYTRV--LHDKHITVERDILSKPLSA--RSDVEVRFAEVTMRKQITGFERRDPKR 620
Query: 858 GIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQ---------NFSFRSGLHAASHALL 908
G L LP+ S ++A++ VP V+A + + ++ F G+HAA H ++
Sbjct: 621 GTTIGQQLLDLPETSLRTKALYFTVPGDVEAEMRELSSDRAEGRDYGFNGGIHAAEHGMI 680
Query: 909 HVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDM 958
+ P+ + C+ D+ P+ S I +YD HPGG G+++ D+
Sbjct: 681 SLFPLRLLCDRGDIGG-LSTPYHSHTDQSTIFIYDGHPGGVGITRAGYDI 729
>gi|121998486|ref|YP_001003273.1| DEAD/DEAH box helicase [Halorhodospira halophila SL1]
gi|121589891|gb|ABM62471.1| DEAD/DEAH box helicase domain protein [Halorhodospira halophila
SL1]
Length = 808
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 239/768 (31%), Positives = 373/768 (48%), Gaps = 92/768 (11%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
+ AR A +P+ L AL+ GI +LYSHQ ++ AG++ VV T T+SGK+L
Sbjct: 34 LPARPARTASLPEDLAPPVAEALRQRGIEQLYSHQRQAWDRIRAGQHTVVVTPTASGKTL 93
Query: 286 CYNLPVL-EALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKD 344
CYNLPVL EAL+ S ALY+FPTKALAQDQ+ L + +A + +DGDT
Sbjct: 94 CYNLPVLHEALTG--SGKALYLFPTKALAQDQVAELHELNQAGGLGVRAYTFDGDTPGDA 151
Query: 345 RMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVI 404
R +R ++++NPDMLH +LP+H +++++ LR +VV+
Sbjct: 152 RKAVRTRGDVVVSNPDMLHQGVLPHHTKWAQLFEQLR-------------------YVVV 192
Query: 405 DEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLEL 464
DE H Y+G FG H A + RRL R+C YG+DP F+F++AT ANP E L + +E
Sbjct: 193 DEMHTYRGVFGSHVANLFRRLRRVC-RFYGADPVFIFTSATIANPGELAGRLIGEAGIEA 251
Query: 465 IQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMD-DTRNAANKTSSPISEVSYLFAEMVQ 523
I G+P +K +LWNP D D R +A ++ I+ ++ V+
Sbjct: 252 ITESGAPAGEKRLLLWNPPVI----------DPDLGIRASARSQTTRIARLA------VR 295
Query: 524 HGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGK 583
GL+ I F RSR + E++ Y +++ + P + YR GY+ +RR ER GG
Sbjct: 296 SGLKAILFARSRLMVEVLTKYLKDVFDRD-PRRPPRVAAYRGGYLPAERRETERALRGGG 354
Query: 584 LCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLD 643
+ V AT+ALELG+D+G +DV + G+PG+IA WQ+ GR+GRR R +L V VA PLD
Sbjct: 355 VDCVVATSALELGVDIGSLDVAVLNGYPGTIAGTWQRLGRAGRRNRTALGVVVATSEPLD 414
Query: 644 QYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITT 703
QY ++ P+ + E ID +L H+ CAA E P E++ G L +
Sbjct: 415 QYMVRNPDFFLGASPEHARIDPDQLLILLDHVRCAAFELPFR--QGEQFGGEDLEELLDY 472
Query: 704 LKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQ--SNEVLEEIE 761
L +G L + + + ++ + P++ +S+R++ + VID + V+ E++
Sbjct: 473 LVEQGLLYRE------GERWHWVA-DSYPANDVSLRSVSDGNFVVIDTTDGAQRVIAEVD 525
Query: 762 ESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNA 821
+ A +YEGA+YM Q Y V+ L+ + A ++ Y+T DYT + +
Sbjct: 526 YTAAPMTLYEGAIYMIQARPYQVERLDWEGRKAFVRETRADYYTDAIDYTRLKI------ 579
Query: 822 YATKISKDQLTKTTAQALACTVTTTWFGF--YRLWRGSGIIFDTVELYLPKYSYESQAVW 879
+ + + A + G+ R + I F +E LP + A W
Sbjct: 580 -LERFEGQRGGEAEAAHGEVHLVRRIAGYKKIRYYTHENIGFGDIE--LPDQEMHTTAAW 636
Query: 880 IQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPN---------- 928
+ P +++A G A++AL HV + + DL +
Sbjct: 637 WTIEPGALEAAFTARHQALDGFLGAAYALHHVAALRLMSEPGDLGRAVGDGDAEWFAVTG 696
Query: 929 -----------------PHDSRYFPERILLYDRHPGGTGVSKQVTDMK 959
H R+ P + LYD +PGG G+S + D +
Sbjct: 697 PRGRGQIRDASGVERGVEHAERFQPA-VFLYDNYPGGVGLSAPLFDQR 743
>gi|320586239|gb|EFW98918.1| dead deah box DNA helicase [Grosmannia clavigera kw1407]
Length = 1518
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 255/746 (34%), Positives = 387/746 (51%), Gaps = 81/746 (10%)
Query: 250 STGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSS-ALYMFP 308
+ GI++ Y HQAE++ AG +VVVAT TSSGKSL Y LPV++AL + ALY+FP
Sbjct: 698 AKGITQFYRHQAEALNGLQAGSHVVVATATSSGKSLIYQLPVVQALEETSGQARALYVFP 757
Query: 309 TKALAQDQLRAL---LAMTKAFDASID-----IGVYDGDTTQKDRMWLRDNARLLITNPD 360
TKALAQDQLR+L L + +S + + +DGDT ++R +R+ AR++ TNPD
Sbjct: 758 TKALAQDQLRSLQELLGWMPGWSSSQERLDEAVATFDGDTPWREREAIRERARVVFTNPD 817
Query: 361 MLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTAL 420
+H +ILP ++ + LR+ VV+DE H Y G G H A
Sbjct: 818 TIHAAILPQEQRWRGFFAQLRI-------------------VVVDELHCYDGLLGTHMAF 858
Query: 421 ILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLS--TLELIQNDGSPCAQKLFV 478
++RRL RLC+ V FV +AT ANP H L ++ T+ +++ DG+P Q+ F+
Sbjct: 859 VMRRLRRLCAAVGNEGVQFVGCSATVANPGGHFGALLGVAAETVTVVERDGAPSGQRDFL 918
Query: 479 LWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLC 538
WN T +AA+ S + E + LF E++ G+R +AFCR R+ C
Sbjct: 919 CWN-------------TPFRVAGDAASGRGSGLHETARLFCELLLRGVRTVAFCRVREQC 965
Query: 539 ELVLSYTREILEETAPHL-VDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGI 597
E +++ R L + + + YR GY A +RR IE D F G+L GV AT ALELG+
Sbjct: 966 EQLVAAVRTNLRQRGRATEAERVMSYRGGYGAAERRGIEADMFAGRLLGVVATTALELGV 1025
Query: 598 DVGHIDVTLHLGFPGSIASLWQQAGRSGRRERP-SLAVYVAFEGPLDQYFMKYPEKLFKS 656
DVG +D L GFP S+ASL QQ+GR+GRR +LAV V DQ++M+ PE LF
Sbjct: 1026 DVGVLDAVLTWGFPYSLASLRQQSGRAGRRRGRDALAVLVGGPFATDQHYMRQPELLFSQ 1085
Query: 657 PIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSL 716
+ +D ++ V E H+ CAA E P+ D YFG L++ L + +
Sbjct: 1086 ELPPLRLDLKSLLVREAHVQCAAAELPIRPDVDGGYFGDDLAA----------LCAARLV 1135
Query: 717 DSSAKIFEYIGHEKMPSHT---ISIRAIESERYE----VIDMQSNE---VLEEIEESKAF 766
A F Y HE+ H + +R S+ E ++D+ + VLEE+E +A
Sbjct: 1136 CDDATGF-YHCHERFRPHPWRLVGLRGGASDDEEPPFAIVDVGARSEPIVLEELEAERAT 1194
Query: 767 FQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATK- 825
F +Y+GA+++HQG YLV+ + ++A + + + T+ RD+TD+ A +
Sbjct: 1195 FTLYDGAIHLHQGAKYLVRNFDPGRRVAEVVRVQVAWTTRQRDFTDVDPVETEAVRAVRA 1254
Query: 826 ---ISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQV 882
+ K +T A +T T FGF+++ G I D V++ P ES+ W+ +
Sbjct: 1255 KEAVWKGGQERTMASLGRIRITQTVFGFFKV-DGRDRILDAVQVDNPPVVRESRGTWLDL 1313
Query: 883 PQSVKAVVE-QNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPN-------PHDSRY 934
P AV++ + + +HAA HA+L ++P +V + D+ EC + R
Sbjct: 1314 PARGLAVLQRRRLHAAAAIHAAEHAVLGLLPAFVVSSPGDVRTECKSHIKEFSATETRRR 1373
Query: 935 FPERILLYDRH--PGGTGVSKQVTDM 958
P R++ YD P G G++ + D
Sbjct: 1374 RPARLVFYDARGGPAGLGIAARAFDF 1399
>gi|254773484|ref|ZP_05215000.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium avium subsp. avium ATCC 25291]
Length = 776
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 249/751 (33%), Positives = 369/751 (49%), Gaps = 79/751 (10%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
HV ++ R + P A + GI +SHQ + + +G++VVV+T T+S
Sbjct: 25 HVAELPPRSGRPHDWPAWAEPEVVGAFAARGIKSPWSHQFTAADLAWSGRHVVVSTGTAS 84
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIG------V 335
GKSL Y LP L AL+ D + LY+ PTKAL DQLRA A+T A + G
Sbjct: 85 GKSLAYQLPALNALATDPRARVLYLSPTKALGHDQLRAAHALTAAIPRLREPGFAVAPTA 144
Query: 336 YDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLI 395
YDGD+ + R + R+ +R + +NPDM+H+S L H +++ +L LR
Sbjct: 145 YDGDSPTEVRRFARERSRWVFSNPDMIHLSTLRNHARWAVLLRGLR-------------- 190
Query: 396 FLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCME 455
FV++DE H Y+G FG H A++LRRL RLC+ Y S P+ +F++AT+ +P E
Sbjct: 191 -----FVIVDECHYYRGVFGSHVAMVLRRLLRLCAR-YASAPAVIFASATTDSPGATAAE 244
Query: 456 LANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVS 515
L L E+ + DGSP + LW P LR+ L N A S E +
Sbjct: 245 LIGLPVREVTE-DGSPQGARTVALWEP--ALRADLVGE--------NGAPVRRSAGGEAA 293
Query: 516 YLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRI 575
+ A+++ G + + F RSR+ EL + L+E AP L + YRAGY+AEDR +
Sbjct: 294 RVMADLIAEGAQTLTFVRSRRAAELTALGAQARLDEIAPELSAQVASYRAGYLAEDRTAL 353
Query: 576 ERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVY 635
ER G+L G+A TNALELG+D+ +D + GFPG++AS WQQAGRSGRR + +L V
Sbjct: 354 ERALAEGRLRGLATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVL 413
Query: 636 VAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLI----YDEK 691
+A + PLD Y + P L P+E ID +N +L L+CAA E PL D
Sbjct: 414 IARDDPLDTYLVHNPAALLGKPVERVVIDPRNPYILGPQLLCAATELPLQEAEVRELDAT 473
Query: 692 YFGSGL-SSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVID 750
GL G+ +N Y + P L P + IR + +++
Sbjct: 474 EVAEGLVDDGLLRRRNGKYFPA-PGL--------------QPHAAVDIRGAGGQ-VVILE 517
Query: 751 MQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDY 810
+ +L +A V+ GAVY+HQG +Y+V L+L IA D Y T R+
Sbjct: 518 ADTGRLLGSAGAGQAPASVHPGAVYLHQGESYVVDSLDLQEGIAFVHAEDPGYATFAREI 577
Query: 811 TDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPK 870
TDI V+G + T + VT G+ R R SG + D +EL +P+
Sbjct: 578 TDIAVTGAGE-------RLVFGPVTLGLVPVRVTHRVVGYLRR-RLSGEVIDFIELDMPE 629
Query: 871 YSYESQAVWIQVPQSVKAVVEQNFS---FRSGLHAASHALLHVVPIYVRCNFSDLA---- 923
++ + A + + +A+ + LHAA HA + ++P+ C+ D+
Sbjct: 630 HTLATTAAMYTITE--EALRDNGIDGPRIPGSLHAAEHAAIGLLPLVASCDRGDIGGLST 687
Query: 924 PECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
P P P + +YD HPGG G +++
Sbjct: 688 AVGPEPAG---LPS-VFVYDGHPGGAGFAER 714
>gi|41406520|ref|NP_959356.1| hypothetical protein MAP0422c [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|417747592|ref|ZP_12396056.1| helicase/secretion neighborhood putative DEAH-box helicase
[Mycobacterium avium subsp. paratuberculosis S397]
gi|440775811|ref|ZP_20954670.1| hypothetical protein D522_02560 [Mycobacterium avium subsp.
paratuberculosis S5]
gi|41394869|gb|AAS02739.1| hypothetical protein MAP_0422c [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|336460801|gb|EGO39686.1| helicase/secretion neighborhood putative DEAH-box helicase
[Mycobacterium avium subsp. paratuberculosis S397]
gi|436724128|gb|ELP47877.1| hypothetical protein D522_02560 [Mycobacterium avium subsp.
paratuberculosis S5]
Length = 776
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 247/746 (33%), Positives = 373/746 (50%), Gaps = 69/746 (9%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
HV ++ R+ + P A + GI +SHQ + + +G++VVV+T T+S
Sbjct: 25 HVAELPPRRGRPHDWPAWAEPEVVGAFAARGIKSPWSHQFTAADLAWSGRHVVVSTGTAS 84
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIG------V 335
GKSL Y LP L AL+ D + LY+ PTKAL DQLRA A+T A + G
Sbjct: 85 GKSLAYQLPALNALATDPRARVLYLSPTKALGHDQLRAAHALTAAIPRLREPGFAVAPTA 144
Query: 336 YDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLI 395
YDGD+ + R + R+ +R + +NPDM+H+S L H +++ +L LR
Sbjct: 145 YDGDSPTEVRRFARERSRWVFSNPDMIHLSTLRNHARWAVLLRGLR-------------- 190
Query: 396 FLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCME 455
FV++DE H Y+G FG H A++LRRL RLC+ Y S P+ +F++AT+ +P E
Sbjct: 191 -----FVIVDECHYYRGVFGSHVAMVLRRLLRLCAR-YASAPTVIFASATTDSPGATAAE 244
Query: 456 LANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVS 515
L L E + DGSP + LW P LR+ L N A S +E +
Sbjct: 245 LIGLPVRE-VTEDGSPQGARTVALWEP--ALRADLVGE--------NGAPVRRSAGAEAA 293
Query: 516 YLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRI 575
+ A+++ G + + F RSR+ EL + L+E AP L + YRAGY+AEDR +
Sbjct: 294 RVMADLIAEGAQTLTFVRSRRAAELTALGAQARLDEIAPGLSAQVASYRAGYLAEDRTAL 353
Query: 576 ERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVY 635
ER G+L G+A TNALELG+D+ +D + GFPG++AS WQQAGRSGRR + +L V
Sbjct: 354 ERALAEGRLRGLATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVL 413
Query: 636 VAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGS 695
+A + PLD Y + P L P+E ID +N +L L+CAA E PL + +
Sbjct: 414 IARDDPLDTYLVHNPAALLGKPVERVVIDPRNPYILGPQLLCAATELPLQEAEVRELDAT 473
Query: 696 GLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNE 755
++ +L + G L + K F G + P + IR + +++ +
Sbjct: 474 EVAE---SLVDDGLLRR-----RNGKYFPAPGLQ--PHAAVDIRGAGGQ-VVILEADTGR 522
Query: 756 VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHV 815
+L +A V+ GAVY+HQG +Y+V L+L IA D Y T R+ TDI V
Sbjct: 523 LLGSAGAGQAPASVHPGAVYLHQGESYVVDSLDLQEGIAFVHAEDPGYATFAREITDIAV 582
Query: 816 SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYES 875
+G + T + VT G+ R R SG + D +EL +P+++ +
Sbjct: 583 TGAGE-------RLVFGPVTLGLVPVRVTHRVVGYLRR-RLSGEVIDFIELDMPEHTLAT 634
Query: 876 QAVWIQVPQSVKAVVEQNFS---FRSGLHAASHALLHVVPIYVRCNFSDLA----PECPN 928
A + + +A+ + LHAA HA + ++P+ C+ D+ P
Sbjct: 635 TAAMYTITE--EALRDNGIDGPRIPGSLHAAEHAAIGLLPLVASCDRGDIGGLSTAVGPE 692
Query: 929 PHDSRYFPERILLYDRHPGGTGVSKQ 954
P P + +YD HPGG G +++
Sbjct: 693 PAG---LPS-VFVYDGHPGGAGFAER 714
>gi|91772525|ref|YP_565217.1| DEAD/DEAH box helicase-like protein [Methanococcoides burtonii DSM
6242]
gi|91711540|gb|ABE51467.1| Nucleic acid binding protein [Methanococcoides burtonii DSM 6242]
Length = 941
Score = 371 bits (952), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 239/745 (32%), Positives = 374/745 (50%), Gaps = 61/745 (8%)
Query: 215 GSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVV 274
G +GQ+VHVE+I R A + L + AL GI +LY+HQA+++ L GKN+V
Sbjct: 15 GYEGQIVHVENILPRDAEFGSV--ELKPLIRYALAEKGIEELYTHQADAVKEVLDGKNIV 72
Query: 275 VATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIG 334
++T T+SGKSLCY LP+ E L D +++ALY+ P AL DQL + + ++I
Sbjct: 73 LSTSTASGKSLCYMLPIFETLMDDPNATALYISPLNALVNDQLESFEKFRDSMGLDLNIN 132
Query: 335 VYDGDTTQKDRMWLR-DNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVY 393
+ G +++ ++ N R+L TNP+M+H+S L + Q+ + LSNL+
Sbjct: 133 KFIGTMPPEEKSAVKYGNPRILFTNPEMVHLSFLQWKQQWKKFLSNLK------------ 180
Query: 394 LIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHC 453
++V+DE+H Y G G + A +LRRL R+C H YGS P ++ TAT NP EH
Sbjct: 181 -------YIVLDESHTYSGVTGINMANLLRRLNRICDH-YGSSPQYICCTATIGNPVEHT 232
Query: 454 MELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISE 513
L + + LI NDGS + F+ WNP RS +N + +S +
Sbjct: 233 SALID-RDVTLIDNDGSGRGAQKFMFWNPPLYSRS------------KNFTVRKAS-FGD 278
Query: 514 VSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRR 573
+F VQ+ L+ I F R+R+ E + R LE + +I YR GY +R
Sbjct: 279 TVNIFTTFVQNDLQTIVFTRARQKVEKMFVEARNQLEGRG--VRKTISSYRGGYYGNERE 336
Query: 574 RIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLA 633
IE+ G++ GV +T ALELGID+G +D + GFPG++ S QQAGR+GR S+
Sbjct: 337 AIEKGLSKGEIAGVISTTALELGIDIGGLDACIIDGFPGTLMSARQQAGRAGRGSSESIV 396
Query: 634 VYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYF 693
V VA LDQY+M+ P + F E I+ N + HL+CAA E PL DE+YF
Sbjct: 397 VLVADSNALDQYYMRNPGEFFVKECERAVINVSNRNIQADHLLCAAKELPLR-DEDERYF 455
Query: 694 GSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQS 753
G +++ FE + + IR ES Y + + S
Sbjct: 456 GEEFKR---------IVAALEEEGLLEGGFEKRSLDGGTHMRVHIRGTESNGYTIFEKGS 506
Query: 754 NEVLE-EIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTD 812
+ LE +I+ +A+ + ++GA+Y +QG Y V +L+ +I +KA Y T+ + +D
Sbjct: 507 RKPLEKDIDRLRAYREGFKGAIYFNQGTPYCVTKLDHEKRIIQVEKARDAYHTRAQVTSD 566
Query: 813 IHVSGGNNAYATKISKDQLTKTTAQALA---CTVTTTWFGFYRLWRGSGIIFDTVELYLP 869
I V I L+ ++ V G+ +L S EL +P
Sbjct: 567 IAVR-------DVIDSKPLSTFDGVSVGFGYVEVIQQVTGYRKLQLRSENELGRFELDMP 619
Query: 870 KYSYESQAVWIQVPQSVKAVVEQ-NFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPN 928
++S E++A+W+++P + +VE+ + F G+HA HAL+ + P+++ + +D+
Sbjct: 620 EFSLETEALWLELPDGLVGLVEEHDRDFNGGIHAIEHALIAMYPLHLLADRNDVGGISTP 679
Query: 929 PHDSRYFPERILLYDRHPGGTGVSK 953
H I +YD H GG G ++
Sbjct: 680 EHGDIGNRSGIFIYDGHAGGVGYAE 704
>gi|365862473|ref|ZP_09402217.1| putative ATP-dependent RNA helicase [Streptomyces sp. W007]
gi|364008066|gb|EHM29062.1| putative ATP-dependent RNA helicase [Streptomyces sp. W007]
Length = 733
Score = 371 bits (952), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 250/716 (34%), Positives = 373/716 (52%), Gaps = 55/716 (7%)
Query: 246 SALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL------SHDL 299
S ++ GI+ ++HQA + +L G++VV+AT T+SGKSL Y PVL L +
Sbjct: 3 SVIEKAGIAHPWAHQAAAAEHALDGESVVIATGTASGKSLAYLAPVLSTLLDGSEAPNGR 62
Query: 300 SSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNP 359
++ALY+ PTKALA DQ R++ A+ ++ VYDGDT ++R W+R A ++TNP
Sbjct: 63 GATALYLAPTKALAADQRRSVKALAAPLGNAVRPAVYDGDTPVEEREWVRQYANYVLTNP 122
Query: 360 DMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTA 419
DMLH ILP H +++ L LR FVVIDE H Y+G FG H A
Sbjct: 123 DMLHRGILPSHPRWASFLRALR-------------------FVVIDECHTYRGVFGSHVA 163
Query: 420 LILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVL 479
+LRRL RLC+ YG+DP F+ ++AT+A+P L L E + +D SP + +F L
Sbjct: 164 QVLRRLRRLCAR-YGADPVFLLASATAADPAVAAGRLTGLPVRE-VSDDASPRGELVFAL 221
Query: 480 WNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCE 539
W P TD+ + A + ++ +E + L ++ G+R +AF RSR+ E
Sbjct: 222 WEP----------PLTDLHGEKGAPVRRTA-TAETADLLTDLTLQGVRSVAFVRSRRGAE 270
Query: 540 LVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDV 599
L+ +E L E L + YR GY+ E+RR +ER G+L G+AAT ALELGIDV
Sbjct: 271 LISVIAKERLAEVDRSLPKRVAAYRGGYLPEERRALERALHSGELLGLAATTALELGIDV 330
Query: 600 GHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIE 659
+ + G+PG+ ASLWQQAGR+GR + +LAV VA + PLD Y + +PE LF+ P+E
Sbjct: 331 SGLGAVVISGYPGTRASLWQQAGRAGRSGQGALAVLVARDDPLDTYLVHHPEALFQQPVE 390
Query: 660 CCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSS 719
+D N VL HL AA E PL+ D FG + + L+ L S
Sbjct: 391 STVLDPDNPYVLAPHLCAAAAELPLTE-PDIALFGPAVPELLPQLEAAKLLRRRSS---- 445
Query: 720 AKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQG 779
+ + E+ + IR ++++ + +L ++ + A V+EGAV++HQG
Sbjct: 446 --GWHWTRRERA-ADLADIRGGGGRPVQIVEEGTGRLLGTVDAAAAHTAVHEGAVHLHQG 502
Query: 780 HTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQAL 839
T+LV++L+L +AL ++AD Y T RD T I V + T+I Q
Sbjct: 503 RTHLVRKLDLEDSVALVEQADPPYSTVARDTTAITVLETD----TEIPWGQGRLCYG--- 555
Query: 840 ACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSG 899
+ VT F R +G + +L LP + ++AVW V + N G
Sbjct: 556 SVEVTNQVVSFLRRKLITGEVLGETKLNLPPRTLRTRAVWWTVTEDQLDAARINPEILGG 615
Query: 900 -LHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
LHAA HA + ++P++ C+ D+ H P + +YD HPGG G +++
Sbjct: 616 ALHAAEHASIGLLPLFATCDRWDIGGVSVPLHPDTLLPT-VFVYDGHPGGAGFAER 670
>gi|323489723|ref|ZP_08094950.1| putative ATP-dependent helicase yprA [Planococcus donghaensis
MPA1U2]
gi|323396854|gb|EGA89673.1| putative ATP-dependent helicase yprA [Planococcus donghaensis
MPA1U2]
Length = 756
Score = 371 bits (952), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 237/769 (30%), Positives = 393/769 (51%), Gaps = 72/769 (9%)
Query: 198 KSQLLPLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLY 257
+ + LP+ ++E + ++VH + A + P + + K+AL+ GI +LY
Sbjct: 3 RRKTLPV-LMEEWKTEPDMMERIVHWHTRQEKPAQYADFPPEMHASLKAALQKKGIEQLY 61
Query: 258 SHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQL 317
+HQ E+ + AG + T T+SGKS CY+LPVL + +D + ALY+FPTKALAQDQ
Sbjct: 62 THQREAFDLATAGNSFTAVTPTASGKSYCYHLPVLHKILNDPGARALYLFPTKALAQDQK 121
Query: 318 RALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRIL 377
L + + + I YDGDT+ R +R ++++TNPDMLH +ILP+H ++ +
Sbjct: 122 SDLHDLIEKTEEEILSYTYDGDTSPAIRTKVRKAGQIVMTNPDMLHSAILPHHTKWVSLF 181
Query: 378 SNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDP 437
NL ++VIDE H YKG FG H A ++RRL R+C YGS+P
Sbjct: 182 ENL-------------------HYIVIDELHTYKGIFGTHVAHVIRRLKRICE-FYGSNP 221
Query: 438 SFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDM 497
F+ ++AT ANP+E L N +T +LI +G+P +K V +NP +
Sbjct: 222 VFICTSATIANPKELAENLTN-NTHKLIDKNGAPSGKKHIVFYNPPIIHPTF-------- 272
Query: 498 DDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLV 557
R +A I EV L ++++G++ I F +SR E++++Y + + +
Sbjct: 273 -GVRRSA------ILEVRDLATHLIKNGIQTIVFAKSRVRVEMLVTYLQAVTKMKLQD-- 323
Query: 558 DSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASL 617
DSI YR GY+ +RR IE+ G + V +TNALELG+D+G + + G+PG+IAS
Sbjct: 324 DSIKGYRGGYLPTERRAIEKGLRDGSIQCVVSTNALELGVDIGQLQACIMTGYPGNIASA 383
Query: 618 WQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVC 677
WQQAGR+GRR+ SL +YVA LDQY + +PE L E I +N +L HL C
Sbjct: 384 WQQAGRAGRRQDESLVIYVAQSTALDQYIINHPEYLLDQSPEEARIHPENIIILMDHLKC 443
Query: 678 AALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTIS 737
A+ E P D++Y + + L+ G L ++ + ++ ++ P+H IS
Sbjct: 444 ASFELPFRT--DDQYGEFEVQELLEYLQEEGVLV------RTSDRWHWMS-DRFPAHDIS 494
Query: 738 IRAIESERYEVIDMQ---SNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIA 794
+R+ E +ID V+ E++ A ++E A+Y+HQG + V+ L+ K A
Sbjct: 495 LRSASQENVVIIDQSVPADTRVIGEMDRFSAMTLLHEEAIYLHQGTQFQVEILDWEEKKA 554
Query: 795 LCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLW 854
++ D+ YFT ++ V + K++K ++ LA F ++
Sbjct: 555 YVREVDVDYFTDANLAVELKVMSEDK--DKKMNKSEVFYGDIAVLAMPTI-----FKKIR 607
Query: 855 RGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFS---FRSGLHAASHALLHVV 911
S + + LP + + W+ + ++FS + A++A+ +
Sbjct: 608 FDSHDNIGSGPISLPAEELHTSSTWLSFSKP------EDFSDSELSDTMTGAAYAIESFI 661
Query: 912 PIYVRCNFSD--LAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDM 958
PI+V+C+ D + P+ +PH+ ++D +PGG G+S+++ D+
Sbjct: 662 PIFVQCDRRDVHVVPQVKSPHNDM---PTFFIHDSYPGGIGISERIYDL 707
>gi|256826291|ref|YP_003150251.1| helicase family protein with metal-binding cysteine cluster
[Kytococcus sedentarius DSM 20547]
gi|256689684|gb|ACV07486.1| helicase family protein with metal-binding cysteine cluster
[Kytococcus sedentarius DSM 20547]
Length = 780
Score = 371 bits (952), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 253/753 (33%), Positives = 385/753 (51%), Gaps = 82/753 (10%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATM 278
++VH E AR AV +PD L ++AL GI +L+SHQAE + AG++ VVAT
Sbjct: 25 RLVHTETHPARDAVTAPLPDWLNPQVEAALAGAGIDQLWSHQAEVAEHAHAGRHTVVATG 84
Query: 279 TSSGKSLCYNLPVLEALS---HDLS---SSALYMFPTKALAQDQLRALLAMTKAFDASID 332
T+SGKSL Y LPVL AL+ H ++ ++ALY+ PTKALAQDQL A+ + I
Sbjct: 85 TASGKSLAYLLPVLSALADGAHHVTGRGATALYLAPTKALAQDQL---AAVERWMVPGIR 141
Query: 333 IGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEV 392
V DGDT ++R W R +A ++TNPD++H S+LP H ++ L L
Sbjct: 142 AAVVDGDTPTEERTWARQHANYVLTNPDLVHHSLLPGHERWRAFLRRLH----------- 190
Query: 393 YLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREH 452
+VV+DE H ++G G H AL+LRRL R+ +G++P+ + ++AT A+P +H
Sbjct: 191 --------YVVVDECHVHRGVPGAHVALVLRRLLRIAR-RHGTEPTVLLASATVADPADH 241
Query: 453 CMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPIS 512
L + + ++ + DGSP + + LW+P Q + D R S ++
Sbjct: 242 ASRLLD-APVQAVTQDGSPRGEVTYALWDP-----------QPEAGDGR------PSTLT 283
Query: 513 EVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAP------------HLVDSI 560
E + + A +++ G + + F SR E+ + LE T +I
Sbjct: 284 EAARISARLIEAGRQVLTFTTSRVGAEVTARVVADQLEFTGTGRGTGAEGDARAAGAPAI 343
Query: 561 CVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQ 620
YR GY+ E+RR IER G L GVAAT ALELGIDV +D + G+PG AS WQQ
Sbjct: 344 AAYRGGYLPEERRAIERGLRDGTLRGVAATTALELGIDVSGLDAVVMAGWPGRRASFWQQ 403
Query: 621 AGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAAL 680
AGR+GR +P+LAV VA + PLD Y + +PE +F +E +D N +VL +HL CAA
Sbjct: 404 AGRAGRSGQPALAVLVAGDNPLDHYLVHHPEGIFSGALEATVVDPSNPRVLAEHLACAAA 463
Query: 681 EHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRA 740
E PL+ D +FG G + +L G L P+ + + G E+ P + +R
Sbjct: 464 ELPLTEA-DSLWFGPGTALVRDSLVRAGMLRERPT------GWYWAGSER-PHGLVDLRG 515
Query: 741 IESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKAD 800
+ ++++ ++ VL I+ +A V+ GAVY+HQG T++V EL+L +A + D
Sbjct: 516 MAGT-LQLLESRTGRVLGTIDAGRADSTVHTGAVYLHQGTTHVVTELDLDDGVATVVEGD 574
Query: 801 LKYFTK--TRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSG 858
+ T+ T + D+ A + D + + L T T F RL SG
Sbjct: 575 PGWITRAVTEEAFDV------TAVRDRAPGDGVEWSVGDVLVRTHVTA---FRRLLP-SG 624
Query: 859 IIFDTVELYLPKYSYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRC 917
+ L LP+ + +Q+VW + P+ + LHAA HAL+ ++ + C
Sbjct: 625 EVLGQHPLDLPERTMPTQSVWFTLTPEVLADAGVDEVELPGALHAAEHALIGMLGLVATC 684
Query: 918 NFSDLAPECPNPHDSRYFPERILLYDRHPGGTG 950
+ D+ H P ++++D HPGG G
Sbjct: 685 DRWDVGGVSTPLHPDTGLPT-VMVHDGHPGGAG 716
>gi|386391114|ref|ZP_10075895.1| helicase family protein with metal-binding cysteine cluster
[Desulfovibrio sp. U5L]
gi|385731992|gb|EIG52190.1| helicase family protein with metal-binding cysteine cluster
[Desulfovibrio sp. U5L]
Length = 1003
Score = 370 bits (951), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 238/742 (32%), Positives = 375/742 (50%), Gaps = 78/742 (10%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+VH A AV + L GI++LY+HQA + + AG+++ VAT T
Sbjct: 62 VVHHRIFPATPAVYADPTRPFSRPVAELLARRGITRLYAHQARATDLARAGRHLAVATPT 121
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDAS--IDIGVYD 337
+SGK+L Y LPVLE + + S A++++P KALAQDQ +A+ +T + AS + ++D
Sbjct: 122 ASGKTLTYLLPVLEEVIRNPDSRAVFLYPLKALAQDQKKAIEELTASLPASGRPRVAIFD 181
Query: 338 GDTTQKDRMWLRDNA-RLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIF 396
GDT+ R +RDN +LITNP+MLH+S+LPYH +S + + L
Sbjct: 182 GDTSPHFRRKIRDNPPHILITNPEMLHLSLLPYHDAWSTLFAGLT--------------- 226
Query: 397 LFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMEL 456
VV DE H Y+G G H A + RRL R+C+ +GS PSFVFS+AT NP + L
Sbjct: 227 ----HVVADEMHTYRGVMGSHMAHVFRRLLRVCAR-FGSRPSFVFSSATIGNPGQLAESL 281
Query: 457 ANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSY 516
LS ++ + G+P + F+ NP S +
Sbjct: 282 TGLS-VDTVTESGAPTGPRHFLFINPEQ------------------------SAATTAVM 316
Query: 517 LFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIE 576
L A ++ GLR I + +SRK+ EL+ + I E+ P+ + YR+G++ E+RR IE
Sbjct: 317 LLAAALKRGLRTIVYTQSRKMTELISLW---IAEKAGPY-ASRVSAYRSGFLPEERRSIE 372
Query: 577 RDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYV 636
G+L V +T+ALELGID+G +D+ + G+PGS+ + WQ+ GR GR +R S +
Sbjct: 373 AAMASGQLLAVVSTSALELGIDIGGLDLCILCGYPGSVMAAWQRGGRVGRAQRESAVALI 432
Query: 637 AFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSG 696
A E LDQYFM++P F P E I+ N +L +HL CAA E PL+ E S
Sbjct: 433 AGEDALDQYFMRHPADFFDRPPESAVINPDNPAILAKHLECAAAELPLT--EGEPLLASP 490
Query: 697 -LSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNE 755
+ + L+ +G L D ++F K P +++R S I+
Sbjct: 491 VVRREVAKLEEKGLLLRD---KDGQRLF---AARKRPHRDVNLRG--SGGQFTIETAGGA 542
Query: 756 VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDY--TDI 813
V+ +I+E +A+ + + GAVY+H+G +YLV+ L++ + + Y+T+ R T+I
Sbjct: 543 VIGQIDEMRAYKETHPGAVYIHRGVSYLVESLDVPERRVRVAPGKVDYYTRARGQKTTEI 602
Query: 814 -HVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYS 872
V G + + +L VT T G+ R G + V L P
Sbjct: 603 LEVLGESKIRGVPVFLGRL----------KVTETVTGYERRAARGGQLLSIVPLDFPPLV 652
Query: 873 YESQAVWIQVPQSVKAVVEQN-FSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHD 931
+E++ W +P++V+A +++ F F +HA HA++ ++P+ V + +DL P
Sbjct: 653 FETEGWWWVIPEAVQAELDRRLFHFMGAIHAMEHAMIGILPLLVLTDRNDLG-GISTPLH 711
Query: 932 SRYFPERILLYDRHPGGTGVSK 953
+ + +YD PGG G+S+
Sbjct: 712 PQVGRACVFIYDGAPGGVGLSR 733
>gi|299535074|ref|ZP_07048399.1| putative ATP-dependent helicase yprA [Lysinibacillus fusiformis
ZC1]
gi|424736035|ref|ZP_18164496.1| putative ATP-dependent helicase yprA [Lysinibacillus fusiformis
ZB2]
gi|298729391|gb|EFI69941.1| putative ATP-dependent helicase yprA [Lysinibacillus fusiformis
ZC1]
gi|422950064|gb|EKU44434.1| putative ATP-dependent helicase yprA [Lysinibacillus fusiformis
ZB2]
Length = 755
Score = 370 bits (951), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 237/757 (31%), Positives = 389/757 (51%), Gaps = 89/757 (11%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATM 278
+++H + + R A P L + AL++ GI +LY+HQ E+ + G + T
Sbjct: 24 RILHWQTLEGRPANYAPFPRNLHPSLMKALQARGIEQLYTHQREAFDLAQRGTSFTAVTP 83
Query: 279 TSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDG 338
T+SGKS CY+LPVL+ + D ++ A+Y+FPTKALAQDQ L + + I YDG
Sbjct: 84 TASGKSYCYHLPVLQKIMEDKNARAIYLFPTKALAQDQKNDLNELIEQSGEEILSYTYDG 143
Query: 339 DTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLF 398
DT R +R +++TNPDMLH ILP+H ++ + NL
Sbjct: 144 DTAPGIRQKVRKAGHIVMTNPDMLHSGILPHHTKWVSLFENL------------------ 185
Query: 399 IRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELAN 458
+++VIDE H YKG FG H A ++RRL R+C YGS P F+ ++AT NP+E L N
Sbjct: 186 -QYIVIDELHTYKGVFGSHVAHVIRRLKRICE-FYGSKPVFICTSATIKNPQELAELLTN 243
Query: 459 LSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLF 518
S + LI + G+P +K F+ +NP +++K+ S + EVS L
Sbjct: 244 ESHM-LIADSGAPVGKKTFLFYNP-----PIIHKT----------FGVRRSAVLEVSDLA 287
Query: 519 AEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVD-SICVYRAGYVAEDRRRIER 577
+ G++ I F +SR E++++Y +E+ T L+D S+ YR GY+ +RR IE+
Sbjct: 288 KRLYTAGIQSIIFAKSRVRVEMIVTYLKEL---TRNKLLDESVRGYRGGYLPSERRVIEK 344
Query: 578 DFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVA 637
G + V +TNALELG+D+G + + G+PG+IAS WQQAGR+GRR+ +L +YVA
Sbjct: 345 GLRDGTIQTVVSTNALELGVDIGQLQACIMTGYPGNIASAWQQAGRAGRRQDEALIIYVA 404
Query: 638 FEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGL 697
LDQY + +P L S E I +N +L HL CAA E P F +G
Sbjct: 405 QSSALDQYVVNHPLFLLGSTPEEARIYPENMLILMDHLKCAAFELP---------FSTGD 455
Query: 698 SSGITTLKN-RGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQ---S 753
+ G ++ YL+ + + ++ + ++ ++ P+H IS+R+ E +ID+
Sbjct: 456 TYGEYDIQELLAYLAEEGVVFKTSDKWHWMS-DRFPAHDISLRSASQENVVIIDLTIPAQ 514
Query: 754 NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDI 813
+V+ E++ A ++E A+Y+HQG + V++L+ K A ++ D+ Y+T
Sbjct: 515 TKVIGEMDRHSAMTLLHEEAIYLHQGIQFQVEKLDWEEKKAYVREVDVDYYTD------- 567
Query: 814 HVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFG----------FYRLWRGSGIIFDT 863
N A K+ ++ ++ A C FG F ++ G+ +
Sbjct: 568 ----ANLAVEMKVLEEDRNRSYAGGTIC------FGDVGLVAQATIFKKIRFGTHDNIGS 617
Query: 864 VELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLA 923
++LP + A W+ K E+ +G+ A +A +P++++C+ SD+A
Sbjct: 618 GPIHLPPDEMHTSASWLSFTAPDKWTEEELTDAMTGVAYAMNAF---IPLFIQCDSSDVA 674
Query: 924 --PECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDM 958
P+ H+ R +YD++PGG G+S++V ++
Sbjct: 675 VVPQVKATHNER---PTFFVYDKYPGGIGLSEKVYEL 708
>gi|389847245|ref|YP_006349484.1| ATP-dependent helicase [Haloferax mediterranei ATCC 33500]
gi|448614809|ref|ZP_21663837.1| ATP-dependent helicase [Haloferax mediterranei ATCC 33500]
gi|388244551|gb|AFK19497.1| ATP-dependent helicase [Haloferax mediterranei ATCC 33500]
gi|445752896|gb|EMA04315.1| ATP-dependent helicase [Haloferax mediterranei ATCC 33500]
Length = 783
Score = 370 bits (950), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 241/770 (31%), Positives = 375/770 (48%), Gaps = 59/770 (7%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
+++E LR +GQ+ AR + ++ L SAL+ GI +LY HQAE++
Sbjct: 3 DLIEWLRARPYYEGQIQSHRRFDARDSAFDDVD--LEPRLASALEDRGIDRLYRHQAEAV 60
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLE-ALSHDLSSSALYMFPTKALAQDQLRAL--L 321
A G NVV+AT T+SGKSL Y +P E A+ H LY+ P AL DQL L L
Sbjct: 61 EAVRDGDNVVLATQTASGKSLAYTIPAFERAMDH--GGRTLYLGPQNALVADQLETLSDL 118
Query: 322 AMTKAFDASIDIGVYDGDTTQKDRMWLRDN-ARLLITNPDMLHMSILPYHGQFSRILSNL 380
A F + + Y G ++ ++ +R +L++NPDM+H ++LP+
Sbjct: 119 AHGLGFGSRVSADQYTGRLSKSEKREVRKRMPTVLLSNPDMIHYALLPH---------AH 169
Query: 381 RLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFV 440
RL + F + VVIDE H Y+G FG H AL+LRRL R+C +GSDP F+
Sbjct: 170 RLWEW---------FFSSLETVVIDEVHGYRGVFGSHVALLLRRLKRVCER-FGSDPQFI 219
Query: 441 FSTATSANPREHCMELANL--STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMD 498
+AT NP EH + ++ L+ D S + ++LWNP + +
Sbjct: 220 CCSATIGNPVEHAARITGERENSFALVDEDTSGTGETHWLLWNP----------PEYENP 269
Query: 499 DTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LV 557
D + + S + E LF ++V G + +AF R+R+ E S + L H L
Sbjct: 270 DAGGSGRRRSGHV-ETKNLFVDLVARGHQTLAFTRARQAAERYASESANDLRSRGEHGLA 328
Query: 558 DSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASL 617
I Y+A + RR IE G + GV +TNALELG+DVG +DV L G+PG+ S
Sbjct: 329 GEIAAYQAALTHDRRREIEAGLHDGDITGVWSTNALELGVDVGGLDVVLIDGYPGTRMSA 388
Query: 618 WQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVC 677
WQQAGR+GR +RP+L V V E LDQY + +P + F E D +N +L H+ C
Sbjct: 389 WQQAGRAGRGDRPALVVLVGGEDQLDQYLLNHPTEFFDGDPERAVSDPENDHLLPSHVAC 448
Query: 678 AALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTIS 737
AA E+ LS D+ YFG ++ L+ G L+ D+ + P H +S
Sbjct: 449 AAAENWLS-TDDDTYFGDSFPDVVSDLEGEGTLA---RRDTDKGVRWTHDGGGSPQHAMS 504
Query: 738 IRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQ 797
+R I +++D ++NE + ++ A + GAVY HQG TY V +L+L +A Q
Sbjct: 505 LRTITDREVQLMDSRNNETIAKLAFDDALRDAHPGAVYHHQGQTYEVADLDLDRDVARLQ 564
Query: 798 KADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGS 857
Y+T+ D H++ + + +S + + T+ GF R
Sbjct: 565 PTWADYYTRV--LHDKHITVERDILSKPLSA--RSDVEVRFAEVTMRKQITGFERRDPKR 620
Query: 858 GIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQ---------NFSFRSGLHAASHALL 908
G L LP+ S ++A++ VP +++ + + +++F G+HAA H ++
Sbjct: 621 GTTIGQQLLDLPETSLRTKALYFTVPSDIESEMRKLGSSHEKGSDYAFNGGIHAAEHGMI 680
Query: 909 HVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDM 958
+ P+ + C+ D+ P+ I +YD HPGG G+++ D+
Sbjct: 681 SLFPLTLLCDRGDIGG-LSTPYHDHTGQSTIFIYDGHPGGVGLTRAGYDI 729
>gi|379734063|ref|YP_005327568.1| DEAD/DEAH box helicase [Blastococcus saxobsidens DD2]
gi|378781869|emb|CCG01521.1| DEAD/DEAH box helicase [Blastococcus saxobsidens DD2]
Length = 827
Score = 370 bits (950), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 249/740 (33%), Positives = 364/740 (49%), Gaps = 60/740 (8%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+ HV + R + + P + L + G+ + HQ + + G++VVVAT T
Sbjct: 52 VTHVHHLPVRPSRTTDWPAWTDPALRDRLAARGVGAPWQHQVAAAQLAREGRHVVVATGT 111
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGD 339
+SGKSL Y LP L L+ D + LY+ PTKALA+DQL ++ A+ D S+ YDGD
Sbjct: 112 ASGKSLAYQLPALTTLAEDPRACVLYLAPTKALARDQLASVAALA---DPSVRPAAYDGD 168
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T ++R W+R ++R ++TNPDMLH ILP H ++S S LR +A+
Sbjct: 169 TPAEERDWVRRHSRWIVTNPDMLHRGILPAHQRWS---STLRRVAY-------------- 211
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
VVIDE HAY+G FG H +LRRL YG+DP FV ++AT A+P L
Sbjct: 212 --VVIDECHAYRGVFGSHVGHVLRRLR-RICRRYGADPVFVLASATVADPAAAATRLVGT 268
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
+ + +DGSP F LW P R+ + A S ++ + L A
Sbjct: 269 EVVA-VTDDGSPRPGATFALWEPPLTERT-----------GEHGAPLRRSAAADAAGLLA 316
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETA-PHLVDSICVYRAGYVAEDRRRIERD 578
++V+ G R +AF RSR+ E V R IL + LV + YR GY+ E+RR +ER
Sbjct: 317 DLVERGARTLAFVRSRRSAESVAEQARRILADRGRADLVRRVDSYRGGYLPEERRELERA 376
Query: 579 FFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAF 638
G L GVA TNALELGID+ +D + G+PG++ASLWQQAGR+GR +R SL V+VA
Sbjct: 377 LSAGDLLGVATTNALELGIDIAGLDAVVLAGYPGTLASLWQQAGRAGRAQRESLVVFVAR 436
Query: 639 EGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLS 698
+ PLD Y +P +F PIE D N VL L CAA E PL+ + G
Sbjct: 437 DDPLDHYLAHHPRAVFGRPIEATVTDPANPYVLGPQLCCAAAELPLTPDDLADFGGPVAE 496
Query: 699 SGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLE 758
+ + L G L P+ Y P + IR E +I+ + +L
Sbjct: 497 AQLEELVAAGQLRRRPT-------GWYWAGRGRPD--VDIRGSGDEPVAIIEAGTGRLLG 547
Query: 759 EIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGG 818
++ A V+EGA+Y+H+G T++V E ++ A+ + T RD TD+ +
Sbjct: 548 TVDGGAAHATVHEGALYVHRGDTFVVDEYDVEDACAVVHPESPDWTTVARDVTDLAI--- 604
Query: 819 NNAYATKISKDQ---LTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYES 875
+S +Q L TA VT + R G+G + L LP +
Sbjct: 605 -------VSIEQTRPLGAVTAHTGVVDVTNQVVAYQRRRLGTGEVLAEFPLVLPPRQLRT 657
Query: 876 QAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRY 934
+AVW+ + ++V+ + + LHAA HA + ++P+ C+ DL H
Sbjct: 658 RAVWLTLDSRAVQRAEVDDAALPGSLHAAEHAAIGILPLLATCDRWDLGGLSTAVHPDTG 717
Query: 935 FPERILLYDRHPGGTGVSKQ 954
I +YD HPGG G +++
Sbjct: 718 T-AAIFVYDGHPGGAGFAER 736
>gi|256830746|ref|YP_003159474.1| DEAD/DEAH box helicase [Desulfomicrobium baculatum DSM 4028]
gi|256579922|gb|ACU91058.1| DEAD/DEAH box helicase domain protein [Desulfomicrobium baculatum
DSM 4028]
Length = 972
Score = 370 bits (949), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 242/719 (33%), Positives = 367/719 (51%), Gaps = 81/719 (11%)
Query: 244 TKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSA 303
+ L G+ +LY HQ ++ AG +VVVAT T+SGKSL YNLPVLEA D + A
Sbjct: 47 VQRGLDLLGVRELYEHQVRAVDLIRAGSHVVVATPTASGKSLIYNLPVLEACHADRRTRA 106
Query: 304 LYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNA-RLLITNPDML 362
LY+FP KALAQDQ RAL ++ + + +YDGDTT R+ +R N +L TNPDML
Sbjct: 107 LYLFPLKALAQDQRRALDSLAASIFPTPTSAIYDGDTTASQRLRIRKNPPNVLFTNPDML 166
Query: 363 HMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALIL 422
H+ ILP H ++S +NL+ FVV+DE H Y+G G H A +
Sbjct: 167 HLGILPSHEKWSEFFANLK-------------------FVVVDEVHTYRGVMGSHMAWVF 207
Query: 423 RRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNP 482
RRL RLC +YG++P+FV S+AT ANP E L LS +++ + + + ++
Sbjct: 208 RRLIRLC-RLYGANPTFVCSSATIANPEELASALTGLSMSAVLEGTAASPPKHMLLI--- 263
Query: 483 TSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVL 542
+ AA K L E + GLR I +C+SR++ EL+
Sbjct: 264 ---------------NGVDGAARKAIG-------LLQESMALGLRTIVYCKSRRMTELIA 301
Query: 543 SYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHI 602
+ E P D IC YRAG++ E+RR IE G+L V +T+ALELGID+G +
Sbjct: 302 LWAGE---RDGPE-KDRICAYRAGFLPEERREIEARLSCGELLAVVSTSALELGIDIGGL 357
Query: 603 DVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCH 662
DV + +G+PGSI + Q++GR GR R + + E LDQYFM +P++ F E
Sbjct: 358 DVCILVGYPGSIMASLQRSGRVGRGGREAATFLIGHEDALDQYFMHHPDEFFALKPEPAV 417
Query: 663 IDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSS---DPSLDSS 719
I+ N + +HL CAA E SL D+ G +N G ++ D + S
Sbjct: 418 INPDNPVIAGRHLQCAAAE--ASLYADDPLVG----------ENPGLIAELVRDGQVLQS 465
Query: 720 AKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQG 779
E+ + P +++R S ++DM S E + ++ +A + + GAVY+H+G
Sbjct: 466 RDGLEFFSKVRQPHRGVALRGTGST-VVIMDMDSGERIGLVDGFRAVLETHPGAVYLHRG 524
Query: 780 HTYLVKELNLSSKIALCQKADLKYFTKTRDYTD---IHVSGGNNAYATKISKDQLTKTTA 836
TY+V +L+L + +A ++A + Y+T+ R + VS + +S +L
Sbjct: 525 VTYVVVDLDLQTGMAKARRAKVSYYTRVRHEKSTEIVEVSASRPVFGAMVSLGRL----- 579
Query: 837 QALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFS- 895
VT G+ R+ G TV L + +E++ VWI +P+SV+ VE +
Sbjct: 580 -----KVTDQVTGYDRISTRGGRNLGTVPLDMEPLVFETRGVWIAIPESVRRSVEAEMAH 634
Query: 896 FRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
F G+HA HA + ++P+ V + +DL P + + +YD PGG G+++Q
Sbjct: 635 FMGGIHALEHAAIGMMPLLVMTDRNDLG-GISIPFHPQVGSAAVFIYDGLPGGCGLAEQ 692
>gi|31794819|ref|NP_857312.1| helicase [Mycobacterium bovis AF2122/97]
gi|289445243|ref|ZP_06434987.1| helicase [Mycobacterium tuberculosis CPHL_A]
gi|289572296|ref|ZP_06452523.1| helicase [Mycobacterium tuberculosis K85]
gi|289747485|ref|ZP_06506863.1| helicase [Mycobacterium tuberculosis 02_1987]
gi|289755775|ref|ZP_06515153.1| DeaD/DeaH box family ATP-dependent RNA helicase [Mycobacterium
tuberculosis EAS054]
gi|289759804|ref|ZP_06519182.1| helicase [Mycobacterium tuberculosis T85]
gi|294995440|ref|ZP_06801131.1| putative helicase [Mycobacterium tuberculosis 210]
gi|298527123|ref|ZP_07014532.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|339633641|ref|YP_004725283.1| helicase [Mycobacterium africanum GM041182]
gi|385992867|ref|YP_005911165.1| putative helicase [Mycobacterium tuberculosis CCDC5180]
gi|385996507|ref|YP_005914805.1| putative helicase [Mycobacterium tuberculosis CCDC5079]
gi|386006459|ref|YP_005924738.1| helicase [Mycobacterium tuberculosis RGTB423]
gi|424806208|ref|ZP_18231639.1| helicase [Mycobacterium tuberculosis W-148]
gi|433628786|ref|YP_007262415.1| Putative helicase [Mycobacterium canettii CIPT 140060008]
gi|31620416|emb|CAD95859.1| PUTATIVE HELICASE [Mycobacterium bovis AF2122/97]
gi|289418201|gb|EFD15402.1| helicase [Mycobacterium tuberculosis CPHL_A]
gi|289536727|gb|EFD41305.1| helicase [Mycobacterium tuberculosis K85]
gi|289688013|gb|EFD55501.1| helicase [Mycobacterium tuberculosis 02_1987]
gi|289696362|gb|EFD63791.1| DeaD/DeaH box family ATP-dependent RNA helicase [Mycobacterium
tuberculosis EAS054]
gi|289715368|gb|EFD79380.1| helicase [Mycobacterium tuberculosis T85]
gi|298496917|gb|EFI32211.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|326905484|gb|EGE52417.1| helicase [Mycobacterium tuberculosis W-148]
gi|339296461|gb|AEJ48572.1| putative helicase [Mycobacterium tuberculosis CCDC5079]
gi|339300060|gb|AEJ52170.1| putative helicase [Mycobacterium tuberculosis CCDC5180]
gi|339332997|emb|CCC28725.1| putative helicase [Mycobacterium africanum GM041182]
gi|380726947|gb|AFE14742.1| helicase [Mycobacterium tuberculosis RGTB423]
gi|432156392|emb|CCK53650.1| Putative helicase [Mycobacterium canettii CIPT 140060008]
Length = 771
Score = 369 bits (948), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 245/740 (33%), Positives = 377/740 (50%), Gaps = 62/740 (8%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
HV ++ + P+ + A GIS +SHQAE+ + AG++VV+ T +S
Sbjct: 25 HVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPWSHQAEAAELAYAGRHVVIGTGPAS 84
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIG--VYDGD 339
GKSL Y LPVL AL+ D + ALY+ PTKAL DQLRA A+ A D+ YDGD
Sbjct: 85 GKSLAYQLPVLNALATDSRARALYLSPTKALGHDQLRAAHALAAAVPRLADVAPTAYDGD 144
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
+ + R + R+ +R L +NP+M H+S+L H +++ +L NLR
Sbjct: 145 SPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAVLLRNLR------------------ 186
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
FV++DE H Y+G FG + A++LRRL RLC+ Y + P+ +F++AT+A+P +L
Sbjct: 187 -FVIVDECHYYRGVFGSNVAMVLRRLLRLCAR-YSAHPTVIFASATTASPGATAADLIGQ 244
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
+E + DGSP + LW P LRS D+ A + S+ +E + + A
Sbjct: 245 PVVE-VTEDGSPRGARTVALWEP--ALRS-------DVIGEHGAPVRRSA-GAEAARVMA 293
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDF 579
+++ G + + F RSR+ EL R L + AP L D++ YRAGY+AEDR + +
Sbjct: 294 DLIVEGAQTLTFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQAL 353
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFE 639
G+L G+A TNALELG+D+ +D + GFPG++AS WQQAGRSGRR + +L V +A +
Sbjct: 354 AEGQLRGLATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARD 413
Query: 640 GPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSS 699
PLD Y + +P L P+E ID N +L L+CAA E PL D + G
Sbjct: 414 DPLDTYLVHHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLD---DAEVRSWGAVE 470
Query: 700 GITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEE 759
+L + G L + + F G + P + +R + +++ + +L
Sbjct: 471 VAESLVDDGLLRR-----RNGRYFPAPGVK--PHAAVDVRGAIGGQIVIVEAGTGRLLGS 523
Query: 760 IEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGN 819
+ +A + GAVY+HQG TY+V L+ IA D Y T R+ TDI V+G
Sbjct: 524 VGVGQAPAAAHPGAVYLHQGETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTG 583
Query: 820 NAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVW 879
+ + TVT G+ R + SG + D VEL +P+++ + AV
Sbjct: 584 E-------RLVFGPVALGLVPVTVTNHVVGYLRR-QLSGEVLDFVELDMPEHTLPTTAVM 635
Query: 880 IQVPQS--VKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPE 937
+ V++ +E LHAA HA + ++P+ C+ D+ + PE
Sbjct: 636 YTITSDALVRSGIEAT-RIPGSLHAAEHAAIGLLPLVASCDRGDI-----GGMSTATGPE 689
Query: 938 ---RILLYDRHPGGTGVSKQ 954
+ +YD +PGG G +++
Sbjct: 690 GLPSVFVYDGYPGGAGFAER 709
>gi|108801762|ref|YP_641959.1| DEAD/DEAH box helicase [Mycobacterium sp. MCS]
gi|119870913|ref|YP_940865.1| DEAD/DEAH box helicase [Mycobacterium sp. KMS]
gi|108772181|gb|ABG10903.1| DEAD/DEAH box helicase-like protein [Mycobacterium sp. MCS]
gi|119697002|gb|ABL94075.1| DEAD/DEAH box helicase domain protein [Mycobacterium sp. KMS]
Length = 775
Score = 369 bits (948), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 249/746 (33%), Positives = 374/746 (50%), Gaps = 70/746 (9%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
HV D+ AR P + A G+ +SHQ + + G++VV++T T+S
Sbjct: 25 HVADLPARPGQPESWPQWAHPDVVRAFVDRGVRTPWSHQRAAADLAHDGRHVVLSTGTAS 84
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGV--YDGD 339
GKSL Y LP+L A++ + + ALY+ PTKAL DQLR A+T A A D+ YDGD
Sbjct: 85 GKSLAYQLPILSAMASEPRTRALYLSPTKALGHDQLRTAQALTDAVPALHDVAPSSYDGD 144
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
+ R + R+ +R + +NPDM+H+S+L H +++ L +L+
Sbjct: 145 SPVDVRRFARERSRWIFSNPDMIHLSLLRNHARWAVFLRHLK------------------ 186
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDP---SFVFSTATSANPREHCMEL 456
F+V+DE H Y+G FG + AL+LRRL Y +DP + VF++AT+A P EL
Sbjct: 187 -FIVVDECHYYRGIFGSNVALVLRRLL-RLCARYSADPGGPTVVFASATTAAPSATAAEL 244
Query: 457 ANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSY 516
+ E+ + DGSP + LW P + L ++ + N A S +E +
Sbjct: 245 IGQTVTEVTE-DGSPQGARTVALWEP-ALLTDLVGE---------NGAPVRRSAGAEAAR 293
Query: 517 LFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIE 576
+ A+++ G R + F RSR+ EL R LEE AP LV+ + YRAGY+AEDRR +E
Sbjct: 294 VMADLIAEGARTLTFVRSRRGAELTALGARARLEEVAPELVEQVASYRAGYLAEDRRELE 353
Query: 577 RDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYV 636
R G+L G+A TNALELG+D+ +D + GFPG++ S WQQAGRSGRR + +L V V
Sbjct: 354 RALADGRLRGLATTNALELGVDIAGLDAVVLAGFPGTVTSFWQQAGRSGRRGQGALIVLV 413
Query: 637 AFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLS----LIYDEKY 692
A + PLD Y + +PE L PIE ID N VL L+CAA E PL+ ++D +
Sbjct: 414 ARDDPLDTYLVHHPEALLDRPIERVVIDPANPYVLAPQLLCAATELPLTDSEVRMWDAET 473
Query: 693 FGSGL-SSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDM 751
L G+ + GY P LD P + IR + +++
Sbjct: 474 VAESLVDDGLLRRRAHGYFPV-PGLD--------------PHPAVDIRGSTGGQIAILEA 518
Query: 752 QSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYT 811
+ +L +A V+ GAVY+HQG +Y+V L+ +A D Y T R+ T
Sbjct: 519 DTGRMLGSANAGQAAASVHPGAVYLHQGESYVVDSLSFEDGVAFVHAEDPGYTTFAREVT 578
Query: 812 DIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKY 871
+I V+G ++ T + +V+ T G+ R R G + D VEL +P
Sbjct: 579 EIAVTGAGE-------RESYGAVTVGLVPVSVSNTVVGYLRR-RLDGEVIDFVELDMPTR 630
Query: 872 SYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLA--PECPN 928
+ ++ A + P+++ F LHAA HA + ++P+ C+ D+
Sbjct: 631 TLDTMAAMCTITPEALLDNGIDPLRFPGSLHAAEHAAIGLLPLVASCDRGDIGGVSTAVG 690
Query: 929 PHDSRYFPERILLYDRHPGGTGVSKQ 954
P D P I +YD +PGG G + +
Sbjct: 691 PEDG--LPT-IFVYDGYPGGAGFAAR 713
>gi|403667438|ref|ZP_10932744.1| ATP-dependent helicase yprA [Kurthia sp. JC8E]
Length = 754
Score = 369 bits (948), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 242/765 (31%), Positives = 385/765 (50%), Gaps = 77/765 (10%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
+++E R + Q+ HV I A +P L +SAL+ G+ LYSHQ E+
Sbjct: 7 QVIEAFRMDEQFKDQIEHVRVIPATAGDYAPLPADLHPKLRSALEKRGVVSLYSHQREAY 66
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
+ + ++ T T+SGKSLCY+LPVL+ + + S+ ALY+FPTKALAQDQ ++ A+
Sbjct: 67 QFARSKQSFTAITPTASGKSLCYHLPVLQTILENPSARALYLFPTKALAQDQKSSVNALI 126
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
I YDGDT R +R +++TNPDMLH ILP+H ++ + NL
Sbjct: 127 DEIGEPILSYTYDGDTAPGIRSKIRKAGHIVMTNPDMLHSGILPHHTKWVSLFENL---- 182
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
+++VIDE H YKG FG H A +LRRL R+C+ YGS P+F+ ++A
Sbjct: 183 ---------------QYIVIDELHTYKGVFGSHVAHVLRRLQRICA-FYGSHPTFICTSA 226
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T NP++ L N +T +LIQ G+P +K F+ +NP + + RNA
Sbjct: 227 TIKNPKQLAENLTN-TTHQLIQKSGAPTGKKTFLFYNPPIVYPTFGIR--------RNA- 276
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVD-SICVY 563
I EV + + + ++ I F +SR E++++Y + + TA + D SI Y
Sbjct: 277 ------ILEVKEIAKHLYESKIQTIVFAKSRVRVEMLVTYLKSL---TAKRINDESIQGY 327
Query: 564 RAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGR 623
R GY+ +RR IE+ G + V +TNALELG+D+G + + G+PG+IAS WQQAGR
Sbjct: 328 RGGYLPSERRAIEKGLREGTIQTVVSTNALELGVDIGQLQACIMTGYPGNIASAWQQAGR 387
Query: 624 SGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHP 683
+GRR+ +L VYV LDQY M +P L K E I +N +L HL CAA E P
Sbjct: 388 AGRRQEDALVVYVGQSTALDQYIMNHPSYLLKKSPEEARIFPENMLILLDHLKCAAFELP 447
Query: 684 LSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIES 743
D+ Y + + + + L ++ + ++ E P+H IS+R+
Sbjct: 448 FKT--DDFYAEFDVEDFLD------FFVEESILIKTSDTWHWMA-ESFPAHEISLRSASQ 498
Query: 744 ERYEVIDMQ---SNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKAD 800
E +ID V+ E++ A +++ A+Y+HQG + V++L+ K A + D
Sbjct: 499 ENVVIIDQSVPTKTRVIGEMDRYSAMTLLHDEAIYLHQGTQFQVEKLDWEEKKAYVTEVD 558
Query: 801 LKYFTKTRDYTDIHVSGGNNAYATKISKD---QLTKTTAQALACTVTTTWFGFYRLWRGS 857
+ YFT ++ V IS+D Q T F ++ G+
Sbjct: 559 VDYFTDANLAVELKV----------ISEDKERQFDGFVVDYGDVMTLATATVFKKIRFGT 608
Query: 858 GIIFDTVELYLPKYSYESQAVWI--QVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYV 915
+ ++LP + + W+ + P K E+ S S + ++A+ +P+Y+
Sbjct: 609 HDNIGSGPIHLPPEELHTSSTWLSFEFPDGWK---EEELS--SAMTGVAYAMNSFIPLYI 663
Query: 916 RCNFSD--LAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDM 958
+ + SD + P+ H+ + +YDR+PGG G+S++V D+
Sbjct: 664 QSDRSDVHVVPQVKAIHNGQ---PTFFVYDRYPGGIGLSERVYDL 705
>gi|424945531|ref|ZP_18361227.1| helicase [Mycobacterium tuberculosis NCGM2209]
gi|358230046|dbj|GAA43538.1| helicase [Mycobacterium tuberculosis NCGM2209]
Length = 725
Score = 369 bits (948), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 242/715 (33%), Positives = 369/715 (51%), Gaps = 62/715 (8%)
Query: 247 ALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYM 306
A GIS +SHQAE+ + AG++VV+ T +SGKSL Y LPVL AL+ D + ALY+
Sbjct: 4 AFADRGISSPWSHQAEAAELAYAGRHVVIGTGPASGKSLAYQLPVLNALATDSRARALYL 63
Query: 307 FPTKALAQDQLRALLAMTKAFDASIDIG--VYDGDTTQKDRMWLRDNARLLITNPDMLHM 364
PTKAL DQLRA A+ A D+ YDGD+ + R + R+ +R L +NP+M H+
Sbjct: 64 SPTKALGHDQLRAAHALAAAVPRLADVAPTAYDGDSPDEVRRFARERSRWLFSNPEMTHL 123
Query: 365 SILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRR 424
S+L H +++ +L NLR FV++DE H Y+G FG + A++LRR
Sbjct: 124 SVLRNHARWAVLLRNLR-------------------FVIVDECHYYRGVFGSNVAMVLRR 164
Query: 425 LCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTS 484
L RLC+ Y + P+ +F++AT+A+P +L +E + DGSP + LW P
Sbjct: 165 LLRLCAR-YSAHPTVIFASATTASPGATAADLIGQPVVE-VTEDGSPRGARTVALWEP-- 220
Query: 485 CLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSY 544
LRS D+ A + S+ +E + + A+++ G + + F RSR+ EL
Sbjct: 221 ALRS-------DVIGEHGAPVRRSAG-AEAARVMADLIVEGAQTLTFVRSRRAAELTALG 272
Query: 545 TREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDV 604
R L + AP L D++ YRAGY+AEDR + + G+L G+A TNALELG+D+ +D
Sbjct: 273 ARARLVDIAPELSDTVASYRAGYLAEDRSALHQALAEGQLRGLATTNALELGVDIAGLDA 332
Query: 605 TLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHID 664
+ GFPG++AS WQQAGRSGRR + +L V +A + PLD Y + +P L P+E ID
Sbjct: 333 VVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDTYLVHHPAALLDKPVERVVID 392
Query: 665 AQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFE 724
N +L L+CAA E PL D + G +L + G L + + F
Sbjct: 393 PVNPHLLGPQLLCAATELPLD---DAEVRSWGAVEVAESLVDDGLLRR-----RNGRYFP 444
Query: 725 YIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLV 784
G + P + +R + +++ + +L + +A + GAVY+HQG TY+V
Sbjct: 445 APGVK--PHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPGAVYLHQGETYVV 502
Query: 785 KELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVT 844
L+ IA D Y T R+ TDI V+G + + TVT
Sbjct: 503 DSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTGE-------RLVFGPVALGLVPVTVT 555
Query: 845 TTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQS--VKAVVEQNFSFRSGLHA 902
G+ R + SG + D VEL +P+++ + AV + V++ +E LHA
Sbjct: 556 NHVVGYLRR-QLSGEVLDFVELDMPEHTLPTTAVMYTITSDALVRSGIEAT-RIPGSLHA 613
Query: 903 ASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPE---RILLYDRHPGGTGVSKQ 954
A HA + ++P+ C+ D+ + PE + +YD +PGG G +++
Sbjct: 614 AEHAAIGLLPLVASCDRGDI-----GGMSTATGPEGLPSVFVYDGYPGGAGFAER 663
>gi|121639562|ref|YP_979786.1| helicase [Mycobacterium bovis BCG str. Pasteur 1173P2]
gi|224992059|ref|YP_002646748.1| helicase [Mycobacterium bovis BCG str. Tokyo 172]
gi|378773423|ref|YP_005173156.1| putative helicase [Mycobacterium bovis BCG str. Mexico]
gi|449065757|ref|YP_007432840.1| helicase [Mycobacterium bovis BCG str. Korea 1168P]
gi|121495210|emb|CAL73696.1| Putative helicase [Mycobacterium bovis BCG str. Pasteur 1173P2]
gi|224775174|dbj|BAH27980.1| putative helicase [Mycobacterium bovis BCG str. Tokyo 172]
gi|341603583|emb|CCC66264.1| putative helicase [Mycobacterium bovis BCG str. Moreau RDJ]
gi|356595744|gb|AET20973.1| Putative helicase [Mycobacterium bovis BCG str. Mexico]
gi|449034265|gb|AGE69692.1| helicase [Mycobacterium bovis BCG str. Korea 1168P]
Length = 771
Score = 369 bits (948), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 245/740 (33%), Positives = 377/740 (50%), Gaps = 62/740 (8%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
HV ++ + P+ + A GIS +SHQAE+ + AG++VV+ T +S
Sbjct: 25 HVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPWSHQAEAAELAYAGRHVVIGTGPAS 84
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIG--VYDGD 339
GKSL Y LPVL AL+ D + ALY+ PTKAL DQLRA A+ A D+ YDGD
Sbjct: 85 GKSLAYQLPVLNALATDSRARALYLSPTKALGHDQLRAAHALAAAVPRLADVAPTAYDGD 144
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
+ + R + R+ +R L +NP+M H+S+L H +++ +L NLR
Sbjct: 145 SPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAVLLRNLR------------------ 186
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
FV++DE H Y+G FG + A++LRRL RLC+ Y + P+ +F++AT+A+P +L
Sbjct: 187 -FVIVDECHYYRGVFGSNVAMVLRRLLRLCAR-YSAHPTVIFASATTASPGATAADLIGQ 244
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
+E + DGSP + LW P LRS D+ A + S+ +E + + A
Sbjct: 245 PVVE-VTEDGSPRGARTVALWEP--ALRS-------DVIGEHGAPVRRSA-GAEAARVMA 293
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDF 579
+++ G + + F RSR+ EL R L + AP L D++ YRAGY+AEDR + +
Sbjct: 294 DLIVEGAQTLTFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQAL 353
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFE 639
G+L G+A TNALELG+D+ +D + GFPG++AS WQQAGRSGRR + +L V +A +
Sbjct: 354 AEGQLRGLATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARD 413
Query: 640 GPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSS 699
PLD Y + +P L P+E ID N +L L+CAA E PL D + G
Sbjct: 414 DPLDTYLVHHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLD---DAEVRSWGAVE 470
Query: 700 GITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEE 759
+L + G L + + F G + P + +R + +++ + +L
Sbjct: 471 VAESLVDDGLLRR-----RNGRYFPAPGVK--PHAAVDVRGAIGGQIVIVEAGTGRLLGS 523
Query: 760 IEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGN 819
+ +A + GAVY+HQG TY+V L+ IA D Y T R+ TDI V+G
Sbjct: 524 VGVGQAPAAAHPGAVYLHQGETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTG 583
Query: 820 NAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVW 879
+ + TVT G+ R + SG + D VEL +P+++ + AV
Sbjct: 584 E-------RLVFGPVALGLVPVTVTNHVVGYLRR-QLSGEVLDFVELDMPEHTLPTTAVM 635
Query: 880 IQVPQS--VKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPE 937
+ V++ +E LHAA HA + ++P+ C+ D+ + PE
Sbjct: 636 YTITSDALVRSGIEAT-RIPGSLHAAEHAAIGLLPLVASCDRDDI-----GGMSTATGPE 689
Query: 938 ---RILLYDRHPGGTGVSKQ 954
+ +YD +PGG G +++
Sbjct: 690 GLPSVFVYDGYPGGAGFAER 709
>gi|126437749|ref|YP_001073440.1| DEAD/DEAH box helicase [Mycobacterium sp. JLS]
gi|126237549|gb|ABO00950.1| DEAD/DEAH box helicase domain protein [Mycobacterium sp. JLS]
Length = 775
Score = 369 bits (948), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 249/746 (33%), Positives = 373/746 (50%), Gaps = 70/746 (9%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
HV D+ R P + A G+ +SHQ + + G++VV++T T+S
Sbjct: 25 HVADLPPRPGQPESWPQWAHPDVVRAFVDRGVRTPWSHQRAAADLAHDGRHVVLSTGTAS 84
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGV--YDGD 339
GKSL Y LP+L A++ + + ALY+ PTKAL DQLR A+T A A D+ YDGD
Sbjct: 85 GKSLAYQLPILSAMASEPRTRALYLSPTKALGHDQLRTAQALTDAVPALHDVAPSSYDGD 144
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
+ R + R+ +R + +NPDM+H+S+L H +++ L +L+
Sbjct: 145 SPVDVRRFARERSRWIFSNPDMIHLSLLRNHARWAVFLRHLK------------------ 186
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDP---SFVFSTATSANPREHCMEL 456
F+V+DE H Y+G FG + AL+LRRL Y +DP + VF++AT+A P EL
Sbjct: 187 -FIVVDECHYYRGIFGSNVALVLRRLL-RLCARYSADPGGPTVVFASATTAAPSATAAEL 244
Query: 457 ANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSY 516
+ E+ + DGSP + LW P + L ++ + N A S +E +
Sbjct: 245 IGQTVTEVTE-DGSPQGARTVALWEP-ALLTDLVGE---------NGAPVRRSAGAEAAR 293
Query: 517 LFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIE 576
+ A+++ G R + F RSR+ EL R LEE AP LV+ + YRAGY+AEDRR +E
Sbjct: 294 VMADLIAEGARTLTFVRSRRGAELTALGARARLEEVAPELVEQVASYRAGYLAEDRRELE 353
Query: 577 RDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYV 636
R G+L G+A TNALELG+D+ +D + GFPG++ S WQQAGRSGRR + +L V V
Sbjct: 354 RALADGRLRGLATTNALELGVDIAGLDAVVLAGFPGTVTSFWQQAGRSGRRGQGALIVLV 413
Query: 637 AFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLS----LIYDEKY 692
A + PLD Y + +PE L PIE ID N VL L+CAA E PL+ ++D +
Sbjct: 414 ARDDPLDTYLVHHPEALLDRPIERVVIDPANPYVLAPQLLCAATELPLTHSEVRMWDAET 473
Query: 693 FGSGL-SSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDM 751
L G+ + GY P LD P + IR + +++
Sbjct: 474 VAESLVDDGLLRRRAHGYFPV-PGLD--------------PHPAVDIRGSTGGQIAILEA 518
Query: 752 QSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYT 811
+ +L +A V+ GAVY+HQG +Y+V L+ +A D Y T R+ T
Sbjct: 519 DTGRMLGSANAGQAAASVHPGAVYLHQGESYVVDSLSFEDGVAFVHAEDPGYTTFAREVT 578
Query: 812 DIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKY 871
DI V+G ++ T + +V+ T G+ R R G + D VEL +P
Sbjct: 579 DIAVTGAGE-------RESYGAVTVGLVPVSVSNTVVGYLRR-RLDGEVIDFVELDMPTR 630
Query: 872 SYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLA--PECPN 928
+ ++ A + P+++ F LHAA HA + ++P+ C+ D+
Sbjct: 631 TLDTMAAMCTITPEALLDNGIDPLRFPGSLHAAEHAAIGLLPLVASCDRGDIGGVSTAVG 690
Query: 929 PHDSRYFPERILLYDRHPGGTGVSKQ 954
P D P I +YD +PGG G + +
Sbjct: 691 PEDG--LPT-IFVYDGYPGGAGFAAR 713
>gi|357590167|ref|ZP_09128833.1| hypothetical protein CnurS_08210 [Corynebacterium nuruki S6-4]
Length = 781
Score = 369 bits (947), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 243/731 (33%), Positives = 374/731 (51%), Gaps = 47/731 (6%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+ HV +AR + V+ PD + + + L+ GI + +SHQ + A+ G++VVVAT T
Sbjct: 19 LTHVRTEAARPSEPVDWPDWVDPDLRRHLEDAGIDRPWSHQVATAQAAHDGRDVVVATGT 78
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGV--YD 337
+SGKSL Y LPVL L+ D ++S LY+ PTKALAQDQ AL + A D+ V YD
Sbjct: 79 ASGKSLGYQLPVLSTLAADGTASCLYLSPTKALAQDQRGALARLCAAVPGLHDVMVATYD 138
Query: 338 GDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFL 397
GDT + R +RD AR++++NPDM+H S+L ++SR+L LR
Sbjct: 139 GDTAPEARRTIRDRARIVVSNPDMVHASVLGQSERWSRLLRTLR---------------- 182
Query: 398 FIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELA 457
++VIDE H Y+G FG H +L+LRRL RL + + P+ + ++AT+A+P H L
Sbjct: 183 ---YLVIDECHVYRGVFGAHVSLVLRRLLRLAARAG-AHPTVILASATTADPAGHARRLT 238
Query: 458 NLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYL 517
L + DGSP ++ LW P + K+ R AA +E + +
Sbjct: 239 GREPLA-VTRDGSPQGERTIALWEPDF----LPEKTGEHGAPVRRAAT------TESAGI 287
Query: 518 FAEMVQHGLRCIAFCRSRKLCEL-VLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIE 576
A ++ G R +AF RSR+ E+ L+ ++ P I YRAGY E RR +E
Sbjct: 288 MARLIAEGARTLAFVRSRRGAEITALAAAEDLSLLGRPGDARRIAAYRAGYTPEARRELE 347
Query: 577 RDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYV 636
G L G+AAT+ALELGIDVG +D + GFPG++AS QQAGR+GRR + L V V
Sbjct: 348 HRLDDGDLLGMAATSALELGIDVGGLDAVVSCGFPGTVASFRQQAGRAGRRGQGCLVVLV 407
Query: 637 AFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSG 696
A + PLD Y + +P L P+E D N +L H++CAA E PL+ + FG
Sbjct: 408 AGDNPLDTYLVHHPAALLDRPVEASVFDPVNPYILADHVLCAAAESPLT-DAEVTAFGGD 466
Query: 697 LSSG--ITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN 754
L + + L ++G L P IF +G ++IR ++ ++D S
Sbjct: 467 LDATPVVARLLDQGLLRRRPR-----GIFCDVGAAATVHGRVNIRGGSGDQVLIVDRTSG 521
Query: 755 EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIH 814
+VL ++ ++A +V++GAVY+HQG +Y+V +L+L +A ++FT+ ++ TDI
Sbjct: 522 QVLGSVDAARAVGEVHDGAVYVHQGESYVVDQLDLDGSVAAVHPESPEWFTRAQETTDIR 581
Query: 815 VSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYE 874
+ G + + + V+ G+ R G + +TV L +P
Sbjct: 582 ILGVRGTRGIGGTASAPSGVWLADVDVEVSHQVTGYQRR-TTDGEVLETVPLDVPAQRLT 640
Query: 875 SQAVWIQVPQSV--KAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDS 932
++A V V +E+ + LHAA HA + ++P+ C+ D+ H
Sbjct: 641 TRAAAYSVDPGVLFDLGLEEPL-WPGALHAAEHAAIGMLPLLATCDRWDIGGVSTVLHPD 699
Query: 933 RYFPERILLYD 943
P + +YD
Sbjct: 700 TGLPT-VFVYD 709
>gi|448570595|ref|ZP_21639335.1| ATP-dependent helicase [Haloferax lucentense DSM 14919]
gi|445723122|gb|ELZ74771.1| ATP-dependent helicase [Haloferax lucentense DSM 14919]
Length = 783
Score = 369 bits (947), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 243/770 (31%), Positives = 376/770 (48%), Gaps = 59/770 (7%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
+++E LR +GQ+ AR + L SAL+ GI +LY HQAE++
Sbjct: 3 DLIEWLRTRPYYEGQIRSRRRFEARAPAFAGVD--LEPRLASALEDRGIDRLYRHQAEAV 60
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLE-ALSHDLSSSALYMFPTKALAQDQLRAL--L 321
A G NVV+AT T+SGKSL Y +P E A+ H LY+ P AL DQL L L
Sbjct: 61 EAVRDGDNVVLATRTASGKSLAYTVPAFERAMDH--GGRTLYLGPQNALVADQLDTLSDL 118
Query: 322 AMTKAFDASIDIGVYDGDTTQKDRMWLRDN-ARLLITNPDMLHMSILPYHGQFSRILSNL 380
A F + + + Y G ++ ++ +R +L++NPDM+H ++LP+
Sbjct: 119 ARGLGFGSRVSVDQYTGRLSKSEKREVRKRMPTVLLSNPDMVHYALLPH---------AH 169
Query: 381 RLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFV 440
RL + F + VVIDE H Y+G FG H AL++RRL R+C +G+DP FV
Sbjct: 170 RLWEW---------FFSSLETVVIDEVHGYRGVFGSHVALLIRRLKRVCER-FGADPQFV 219
Query: 441 FSTATSANPREHCMELANL--STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMD 498
+AT NP EH + + L+ +D S + ++LWNP + D
Sbjct: 220 CCSATIGNPVEHAARITGEREDSFTLVDDDTSGTGETNWLLWNP----------PEYDNP 269
Query: 499 DTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LV 557
D + + S + E LF ++V G + +AF R+R+ E S + L H L
Sbjct: 270 DAGGSGRRRSGHV-ETKNLFVDLVARGHQTLAFTRARQAAERYASESASDLRSRGEHDLA 328
Query: 558 DSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASL 617
+ Y+A + RR IE G + GV +TNALELG+DVG +DV L G+PG+ S
Sbjct: 329 GEVAAYQASLTHDRRREIEAGLHDGDIAGVWSTNALELGVDVGGLDVVLIDGYPGTRMSA 388
Query: 618 WQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVC 677
WQQAGR+GR +RP+L V V E LDQY M +P + F E D +N +L H+ C
Sbjct: 389 WQQAGRAGRGDRPALVVLVGGEDQLDQYLMNHPAEFFDGDPERAVSDPENDHLLPSHVAC 448
Query: 678 AALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTIS 737
AA E+ LS DE FG+ ++ L+ G L+ + D + + G E P H +S
Sbjct: 449 AAAENWLS-TEDESKFGASFPGIVSDLEADGTLARRETDD--GLRWTHDGSES-PQHAMS 504
Query: 738 IRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQ 797
+R I +++D +++E + + A + GAVY HQG TY V EL+L +A +
Sbjct: 505 LRTITDREVQLMDSRNDETIATLAFDDALRDAHPGAVYHHQGQTYEVAELDLDRDVARLR 564
Query: 798 KADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGS 857
Y+T+ D H++ + + +S + + T+ GF R
Sbjct: 565 PTWADYYTRV--LHDKHITVERDILSKPLSA--RSDVEVRFAEVTMRKQITGFERRDPKR 620
Query: 858 GIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQ---------NFSFRSGLHAASHALL 908
G L LP+ S ++A++ VP V++ + + ++ F G+HAA H ++
Sbjct: 621 GTTIGQQLLDLPETSLRTKALYFTVPGDVESEMRELSSDRAEGRDYGFNGGIHAAEHGMI 680
Query: 909 HVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDM 958
+ P+ + C+ D+ P+ + I +YD HPGG G+++ D+
Sbjct: 681 SLFPLRLLCDRGDIG-GLSTPYHAHTDQSTIFIYDGHPGGVGIARAGYDI 729
>gi|419963025|ref|ZP_14479009.1| helicase [Rhodococcus opacus M213]
gi|414571625|gb|EKT82334.1| helicase [Rhodococcus opacus M213]
Length = 723
Score = 369 bits (947), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 244/720 (33%), Positives = 367/720 (50%), Gaps = 68/720 (9%)
Query: 248 LKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMF 307
++ GI + ++HQA + + G NVVV+T T+SGKSL Y LPVL L+ D ++ALY+
Sbjct: 1 MQENGIPRPWTHQAAAADLARHGTNVVVSTGTASGKSLAYQLPVLTTLATDPRATALYLS 60
Query: 308 PTKALAQDQLRALLAM--TKAFDASIDIG-----VYDGDTTQKDRMWLRDNARLLITNPD 360
PTKAL DQLRA+ ++ ++ DA D+ V+DGDT + R W R+N+R L TNPD
Sbjct: 61 PTKALGADQLRAVTSLIDSEVLDAGDDLRSVCPCVFDGDTPLEVRHWARENSRWLFTNPD 120
Query: 361 MLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTAL 420
MLH+S+L H +++ NL +VVIDE H+Y+G FG + AL
Sbjct: 121 MLHISLLRTHQRWAHFFRNLA-------------------YVVIDECHSYRGVFGSNVAL 161
Query: 421 ILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLW 480
+LRRL R+ + YG+DP FV ++AT+A+P L E+++ DGSP + LW
Sbjct: 162 VLRRLRRIAA-RYGADPVFVLASATTADPGAAASRLIGAPCAEVVE-DGSPHGPRTVALW 219
Query: 481 NPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCEL 540
P +R V ++ + + R A SE + + A+++ G R + F RSR+ EL
Sbjct: 220 EP-PLMREVTGENGSPV---RRPAG------SEAARIMADLMVEGARTLTFVRSRRGAEL 269
Query: 541 VLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVG 600
T+ +L E P L + YRAGY+AEDRR +E G L G A TNALELG+D+
Sbjct: 270 TAMATKRLLGEIDPELSARVASYRAGYLAEDRRELETALADGTLLGAATTNALELGVDIA 329
Query: 601 HIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIEC 660
+D + GFPG++AS WQQ GRSGRR SL V VA + PLD Y + +P L P+E
Sbjct: 330 GLDAVVVAGFPGTVASFWQQGGRSGRRGEGSLVVLVARDDPLDTYLVHHPSALLDKPVEA 389
Query: 661 CHIDAQNHKVLEQHLVCAALEHPLSLIYDEKY-----FGSGLSSGITTLKNRGYLSSDPS 715
D N VL L+CAA+E PLS E + G G+ + G+
Sbjct: 390 TVTDPSNPYVLGPQLLCAAMELPLSDAEAEAFGAIDVLGKLAEQGLIRRRAHGW------ 443
Query: 716 LDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVY 775
++ P + IR + ++ +S +L ++ +A + GAV+
Sbjct: 444 ---------FVTAGTNPHGAVDIRGGIGTQVAIVVSESGRMLGTVDTGRAPATAHPGAVH 494
Query: 776 MHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTT 835
+HQG +Y+V EL+L +AL D + T R+ T+I V+ + + + Q
Sbjct: 495 IHQGESYVVDELDLDQGLALVHAEDPDWTTSARETTEITVT-------SVLEQKQFGDVE 547
Query: 836 AQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQV-PQSVKAVVEQNF 894
+ VT G+ R SG + D VEL +P+ + ++AV + P+ +
Sbjct: 548 VALVEVEVTHQVIGYLRRLS-SGEVLDAVELDMPRQTLPTRAVMYTITPELLVQAGVPAE 606
Query: 895 SFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
LHAA HA + ++P+ C+ D+ H P + +YD H GG G + +
Sbjct: 607 RVPGSLHAAEHAAIGLLPLVAVCDRGDIGGVSTALHADTGLPT-VFVYDGHAGGAGFADR 665
>gi|384103508|ref|ZP_10004485.1| helicase [Rhodococcus imtechensis RKJ300]
gi|383839349|gb|EID78706.1| helicase [Rhodococcus imtechensis RKJ300]
Length = 723
Score = 369 bits (947), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 244/720 (33%), Positives = 367/720 (50%), Gaps = 68/720 (9%)
Query: 248 LKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMF 307
++ GI + ++HQA + + G NVVV+T T+SGKSL Y LPVL L+ D ++ALY+
Sbjct: 1 MQENGIPRPWTHQAAAADLARHGTNVVVSTGTASGKSLAYQLPVLTTLATDPRATALYLS 60
Query: 308 PTKALAQDQLRALLAM--TKAFDASIDIG-----VYDGDTTQKDRMWLRDNARLLITNPD 360
PTKAL DQLRA+ ++ ++ DA D+ V+DGDT + R W R+N+R L TNPD
Sbjct: 61 PTKALGADQLRAVTSLIDSEVLDAGDDLRSVCPCVFDGDTPLEVRHWARENSRWLFTNPD 120
Query: 361 MLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTAL 420
MLH+S+L H +++ NL +VVIDE H+Y+G FG + AL
Sbjct: 121 MLHISLLRTHQRWAHFFRNLA-------------------YVVIDECHSYRGVFGSNVAL 161
Query: 421 ILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLW 480
+LRRL R+ + YG+DP FV ++AT+A+P L E+++ DGSP + LW
Sbjct: 162 VLRRLRRIAA-RYGADPVFVLASATTADPGAAASRLIGAPCAEVVE-DGSPHGPRTVALW 219
Query: 481 NPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCEL 540
P +R V ++ + + R A SE + + A+++ G R + F RSR+ EL
Sbjct: 220 EP-PLMREVTGENGSPV---RRPAG------SEAARIMADLMVEGARTLTFVRSRRGAEL 269
Query: 541 VLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVG 600
T+ +L E P L + YRAGY+AEDRR +E G L G A TNALELG+D+
Sbjct: 270 TAMATKRLLGEIDPELSARVASYRAGYLAEDRRELETALADGTLLGAATTNALELGVDIA 329
Query: 601 HIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIEC 660
+D + GFPG++AS WQQ GRSGRR SL V VA + PLD Y + +P L P+E
Sbjct: 330 GLDAVVVAGFPGTVASFWQQGGRSGRRGEGSLVVLVARDDPLDTYLVHHPSALLDKPVEA 389
Query: 661 CHIDAQNHKVLEQHLVCAALEHPLSLIYDEKY-----FGSGLSSGITTLKNRGYLSSDPS 715
D N VL L+CAA+E PLS E + G G+ + G+
Sbjct: 390 TVTDPSNPYVLGPQLLCAAMELPLSDAEAEAFGAIDILGKLAEQGLIRRRAHGW------ 443
Query: 716 LDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVY 775
++ P + IR + ++ +S +L ++ +A + GAV+
Sbjct: 444 ---------FVTAGTNPHGAVDIRGGIGTQVAIVVSESGRMLGTVDTGRAPATAHPGAVH 494
Query: 776 MHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTT 835
+HQG +Y+V EL+L +AL D + T R+ T+I V+ + + + Q
Sbjct: 495 IHQGESYVVDELDLDQGLALVHAEDPDWTTSARETTEITVT-------SVLEQKQFGDVE 547
Query: 836 AQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQV-PQSVKAVVEQNF 894
+ VT G+ R SG + D VEL +P+ + ++AV + P+ +
Sbjct: 548 VALVEVEVTHQVIGYLRRLS-SGEVLDAVELDMPRQTLPTRAVMYTITPELLVQAGVPAE 606
Query: 895 SFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
LHAA HA + ++P+ C+ D+ H P + +YD H GG G + +
Sbjct: 607 RVPGSLHAAEHAAIGLLPLVAVCDRGDIGGVSTALHADTGLPT-VFVYDGHAGGAGFADR 665
>gi|333994484|ref|YP_004527097.1| putative ATP-dependent helicase HRQ1 [Treponema azotonutricium
ZAS-9]
gi|333735050|gb|AEF80999.1| putative ATP-dependent helicase HRQ1 [Treponema azotonutricium
ZAS-9]
Length = 766
Score = 369 bits (947), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 242/763 (31%), Positives = 386/763 (50%), Gaps = 99/763 (12%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
+ A + P + A K+ GI ++Y+HQAE G++ VV T T+SGK+L
Sbjct: 26 LQATEGSFAPFPQDVEPRIAEACKARGIDRIYTHQAEVWANVKKGRHTVVVTPTASGKTL 85
Query: 286 CYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL--LAMTKAFDA-SIDIGVYDGDTTQ 342
CYNLPVL+AL D + ALY+FPTKAL+QDQ L L + DA + + YDGDT
Sbjct: 86 CYNLPVLDALLRDDKARALYLFPTKALSQDQQSELNELVGAQGEDAIPVKVSTYDGDTPD 145
Query: 343 KDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFV 402
R+ RD R++I+NPDMLH ILP H ++ + SNL+ ++
Sbjct: 146 SLRVAARDTGRIIISNPDMLHAGILPNHPKWIKFFSNLK-------------------YI 186
Query: 403 VIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTL 462
VIDEAHAY+G G H A ++RRL R+ S YGS P F+ +AT NP+E L +
Sbjct: 187 VIDEAHAYRGVLGSHVADLIRRLKRIAS-FYGSRPVFILCSATIGNPKELAQTLIG-EEV 244
Query: 463 ELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMV 522
L+ +G+P +K +L+NP + SV ++ +D++R ++ A +
Sbjct: 245 ALVDKNGAPRGEKRIILYNP-PLVDSVQGIRKSVVDESRR-------------WMLA-FL 289
Query: 523 QHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDS----ICVYRAGYVAEDRRRIERD 578
+ G++ I F SR E+ SY E L A D+ + YR G + +RR IER
Sbjct: 290 KAGIKTILFAHSRVKTEVAASYVNEDL---ANIFTDNSRIKVEAYRGGLLPNERREIERG 346
Query: 579 FFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAF 638
G + GV +TNALELGID+G +D ++ GFPGS +S WQQ+GR+GRR S+AV+VA
Sbjct: 347 LREGAIQGVVSTNALELGIDIGGLDASVVAGFPGSFSSFWQQSGRAGRRGGTSIAVFVAS 406
Query: 639 EGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLS 698
P+DQ+ M+ PE F+ E ID N +L H+ CAA E P + + + +G
Sbjct: 407 ASPIDQFIMEDPEWFFRKNAEEARIDPDNPYILADHIKCAAFELP----FRDDFLENGED 462
Query: 699 SGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHT---------------ISIRAIES 743
S + D + + E++ E + HT IS+R+ +
Sbjct: 463 SFTS--------------DEAVPVLEFLEEEGIVRHTSGKWHWADRSFPAEGISLRSATA 508
Query: 744 ERYEVIDMQS--NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADL 801
+ +ID+ N V+ E++ A ++E AVY+H+G+ YLV++L++ ++ L ++A++
Sbjct: 509 DNVVIIDVTKGRNTVIGEMDRPSAKELIFENAVYIHRGNQYLVEKLDIENRKCLVREAEV 568
Query: 802 KYFTKTRDYTDIHV--SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGI 859
YFT TDI V N Y ++ L ++ F R I
Sbjct: 569 NYFTDGLVKTDIKVLTEDANFEYPENTARGVLGDVLVRSQVAK-----FKKIRFRTNENI 623
Query: 860 IFDTVELYLPKYSYESQAVWIQV-PQSVKAVVEQNF---SFRSGLHAASHALLHVVPIYV 915
+ ++ LP+ +++A+ + +S V F + + L + ++ P+++
Sbjct: 624 GYGQID--LPEEEMQTRALMLLFDSESRGGKVLDGFDEAAAGAALSGTGTLIKNIAPVFL 681
Query: 916 RCNFSDL--APECPNPHDSRYFPERILLYDRHPGGTGVSKQVT 956
C+ DL A +PH + + +YD++PGGTG+++ ++
Sbjct: 682 LCDPRDLGIAERVRDPH---FGIPALYIYDKYPGGTGLAESLS 721
>gi|432340290|ref|ZP_19589737.1| helicase [Rhodococcus wratislaviensis IFP 2016]
gi|430774683|gb|ELB90264.1| helicase [Rhodococcus wratislaviensis IFP 2016]
Length = 723
Score = 369 bits (946), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 244/720 (33%), Positives = 367/720 (50%), Gaps = 68/720 (9%)
Query: 248 LKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMF 307
++ GI + ++HQA + + G NVVV+T T+SGKSL Y LPVL L+ D ++ALY+
Sbjct: 1 MQENGIPRPWTHQAAAADLARHGTNVVVSTGTASGKSLAYQLPVLTTLATDPRATALYLS 60
Query: 308 PTKALAQDQLRALLAM--TKAFDASIDIG-----VYDGDTTQKDRMWLRDNARLLITNPD 360
PTKAL DQLRA+ ++ ++ DA D+ V+DGDT + R W R+N+R L TNPD
Sbjct: 61 PTKALGADQLRAVTSLIDSEVLDAGDDLRSVCPCVFDGDTPLEVRHWARENSRWLFTNPD 120
Query: 361 MLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTAL 420
MLH+S+L H +++ NL +VVIDE H+Y+G FG + AL
Sbjct: 121 MLHISLLRTHQRWAHFFRNLA-------------------YVVIDECHSYRGVFGSNVAL 161
Query: 421 ILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLW 480
+LRRL R+ + YG+DP FV ++AT+A+P L E+++ DGSP + LW
Sbjct: 162 VLRRLRRIAA-RYGADPVFVLASATTADPGAAASRLIGAPCAEVVE-DGSPHGPRTVALW 219
Query: 481 NPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCEL 540
P +R V ++ + + R A SE + + A+++ G R + F RSR+ EL
Sbjct: 220 EP-PLMREVTGENGSPV---RRPAG------SEAARIMADLMIEGARTLTFVRSRRGAEL 269
Query: 541 VLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVG 600
T+ +L E P L + YRAGY+AEDRR +E G L G A TNALELG+D+
Sbjct: 270 TAMATKRLLGEIDPELSARVASYRAGYLAEDRRELETALADGTLLGAATTNALELGVDIA 329
Query: 601 HIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIEC 660
+D + GFPG++AS WQQ GRSGRR SL V VA + PLD Y + +P L P+E
Sbjct: 330 GLDAVVVAGFPGTVASFWQQGGRSGRRGEGSLVVLVARDDPLDTYLVHHPSALLDKPVEA 389
Query: 661 CHIDAQNHKVLEQHLVCAALEHPLSLIYDEKY-----FGSGLSSGITTLKNRGYLSSDPS 715
D N VL L+CAA+E PLS E + G G+ + G+
Sbjct: 390 TVTDPSNPYVLGPQLLCAAMELPLSDAEAEAFGAIDVLGKLAEQGLIRRRAHGW------ 443
Query: 716 LDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVY 775
++ P + IR + ++ +S +L ++ +A + GAV+
Sbjct: 444 ---------FVTAGTNPHGAVDIRGGIGTQVAIVVSESGRMLGTVDTGRAPATAHPGAVH 494
Query: 776 MHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTT 835
+HQG +Y+V EL+L +AL D + T R+ T+I V+ + + + Q
Sbjct: 495 IHQGESYVVDELDLDQGLALVHAEDPDWTTSARETTEITVT-------SVLEQKQFGDVE 547
Query: 836 AQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQV-PQSVKAVVEQNF 894
+ VT G+ R SG + D VEL +P+ + ++AV + P+ +
Sbjct: 548 VALVEVEVTHQVIGYLRRLS-SGEVLDAVELDMPRQTLPTRAVMYTITPELLVQAGVPAE 606
Query: 895 SFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
LHAA HA + ++P+ C+ D+ H P + +YD H GG G + +
Sbjct: 607 RVPGSLHAAEHAAIGLLPLVAVCDRGDIGGVSTALHADTGLPT-VFVYDGHAGGAGFADR 665
>gi|386384422|ref|ZP_10069800.1| hypothetical protein STSU_15487 [Streptomyces tsukubaensis
NRRL18488]
gi|385668133|gb|EIF91498.1| hypothetical protein STSU_15487 [Streptomyces tsukubaensis
NRRL18488]
Length = 732
Score = 369 bits (946), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 248/718 (34%), Positives = 370/718 (51%), Gaps = 61/718 (8%)
Query: 247 ALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL------SHDLS 300
A++ GI + HQ + +L G++VV+AT T+SGKSL Y PVL L +
Sbjct: 4 AIQQAGIDHPWVHQTAAAEHALDGESVVIATGTASGKSLAYLAPVLTTLLDGAEAPNGRG 63
Query: 301 SSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPD 360
++ALY+ PTKALA DQ RA+ A+ + VYDGDT ++R W+R A ++TNPD
Sbjct: 64 ATALYLAPTKALAADQCRAVKALAAPLGNRVRPAVYDGDTPFEEREWVRQYAGYVLTNPD 123
Query: 361 MLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTAL 420
MLH SILP H ++S L LR +VVIDE H Y+G FG H A
Sbjct: 124 MLHRSILPSHPRWSSFLRALR-------------------YVVIDECHTYRGVFGSHVAQ 164
Query: 421 ILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLW 480
+LRRL R+C+ YG+DP F+ ++AT+A+P L + E + +D SP + +F LW
Sbjct: 165 VLRRLRRICAR-YGADPVFLLASATAADPARAAGRLTGVPVHE-VADDASPRGELVFALW 222
Query: 481 NPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCEL 540
P T++ + A + ++ +E + L ++ G+R +AF RSR+ EL
Sbjct: 223 EP----------PLTELHGEKGAPVRRTA-TAETADLLTDLTVQGVRTVAFVRSRRGAEL 271
Query: 541 VLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVG 600
+ ++E L E L + YR GY+ E+RR +ER G+L G+AAT ALELGIDV
Sbjct: 272 ISVISKERLAEVDRTLPRRVAAYRGGYLPEERRALERALHSGELLGLAATTALELGIDVS 331
Query: 601 HIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIEC 660
+D L G+PG+ ASLWQQAGR+GR + +LAV +A + PLD + + +PE LF P+E
Sbjct: 332 GLDAVLIAGYPGTRASLWQQAGRAGRGGQGALAVLIARDDPLDTFLVHHPEALFAQPVES 391
Query: 661 CHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSA 720
+D N VL HL AA E PL+ D FG + L+ L A
Sbjct: 392 TVLDPDNPYVLAPHLCAAAAELPLTEA-DLSLFGPAAPGLMPQLEAAKLLR------RRA 444
Query: 721 KIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGH 780
+ + E+ + IR ++++ + +L ++ES A V+EGAV++HQG
Sbjct: 445 SGWHWTRRERA-ADLADIRGGGGRPVQIVEEGTGRLLGTVDESAAHTSVHEGAVHLHQGR 503
Query: 781 TYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALA 840
TYLV+ L+L +AL ++A Y T RD T + V G + +L + +
Sbjct: 504 TYLVRRLDLEDSVALVEEAVPPYSTTARDTTAVSVLGTDT--EVPWGDGRLCYGSVE--- 558
Query: 841 CTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVP----QSVKAVVEQNFSF 896
VT F R +G + +L LP + ++AVW V + + EQ
Sbjct: 559 --VTNQVVSFLRRKLITGEVLGETKLDLPPRTLRTRAVWWTVTDDQLDAARITPEQ---L 613
Query: 897 RSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
LHAA HA + ++P++ C+ D+ H P + +YD HPGG G +++
Sbjct: 614 GGALHAAEHASIGMLPLFATCDRWDIGGVSVPLHPDTLLPT-VFVYDGHPGGAGFAER 670
>gi|297617693|ref|YP_003702852.1| DEAD/DEAH box helicase [Syntrophothermus lipocalidus DSM 12680]
gi|297145530|gb|ADI02287.1| DEAD/DEAH box helicase domain protein [Syntrophothermus lipocalidus
DSM 12680]
Length = 752
Score = 369 bits (946), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 237/732 (32%), Positives = 366/732 (50%), Gaps = 80/732 (10%)
Query: 235 EIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEA 294
E P+A + K GI KLYSHQ+E+ A + G +VV+ T T+SGK++CYNLPV++
Sbjct: 35 EFPEACSKQLVTVYKKRGIDKLYSHQSEAYTAVVEGNHVVIVTPTASGKTMCYNLPVIDT 94
Query: 295 LSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARL 354
+ + + ALY+FPTKALAQDQL L + + I + YDGDT R +R A L
Sbjct: 95 IIKEPETRALYIFPTKALAQDQLNELEELCSLVGSGIKVFTYDGDTPVDARRSVRRMANL 154
Query: 355 LITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAF 414
+ITNPDMLH ILP+H ++ + NL +FVVIDE H+Y+G F
Sbjct: 155 VITNPDMLHTGILPHHPRWITLFENL-------------------KFVVIDEMHSYRGVF 195
Query: 415 GCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQ 474
G H A ++RRL R+ + YGS P F+ +AT ANP E L LI G+P
Sbjct: 196 GSHMAHVIRRLKRIARY-YGSQPVFIMCSATIANPEELASRLTG-ERFHLISECGAPRGG 253
Query: 475 KLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRS 534
+ F+ +NP V+N+ ++ R++ N E L + G + I F +S
Sbjct: 254 RYFIFYNP-----PVVNE---ELGIRRSSLN-------EAQRLAGHFLDRGFKTIVFAKS 298
Query: 535 RKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALE 594
R + EL+ Y RE E ++ YR GY+ ++RR IE+ G + GV TNA+E
Sbjct: 299 RLMVELLGRYLRE--REKKKARGKNVKTYRGGYLPKERREIEKGLRSGDIDGVVCTNAME 356
Query: 595 LGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLF 654
LG+D+G +DV++ G+PGSIAS WQQAGR+GRR + S+ V VA PLDQY +++P
Sbjct: 357 LGVDIGELDVSIMAGYPGSIASTWQQAGRAGRRNKESVTVLVASSAPLDQYLVRHPRYFL 416
Query: 655 KSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDP 714
+ E I+ +N + +HL CA+ E P+++ + L+ YL +
Sbjct: 417 EQSPEMGLINPENFIIKAEHLKCASFELPVAV--------EEVEDDPEALEILEYLVDNR 468
Query: 715 SLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNE--VLEEIEESKAFFQVYEG 772
L S + +I + P+H +S+R++ + ++D+ V+ E++ S A +YEG
Sbjct: 469 FLHSVDDRYYWIA-DAYPAHEVSLRSVGAANVVIMDVTDPNPVVIGEMDRSSAMTMLYEG 527
Query: 773 AVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLT 832
A+Y+HQ Y V + + A +K Y+T DI V + Q T
Sbjct: 528 AIYLHQEGQYQVIRFDFDNGRAYVKKVRADYYTDADLAVDIKV--------LNVFSQQET 579
Query: 833 KTTAQALACTVTTTWFGFYRLWRGSGIIFDTVE------LYLPKYSYESQAVWIQVPQSV 886
+ + T Y+ I + T E + LP+ + W+ S+
Sbjct: 580 GAAVKKWGEVMVTQMPMVYK-----KIKYRTHENVGYGPINLPQEDMHTSGFWL----SI 630
Query: 887 KAVVEQNFSFRS---GLHAASHALLHVVPIYVRCNFSDL--APECPNPHDSRYFPERILL 941
+ V QN S L ++ ++ PI++ C+ D+ AP+ P + +
Sbjct: 631 GSEVTQNMSNEEKELALLGLANLYKNLTPIFLMCDSQDIGVAPQVKAVESG--LPT-VYV 687
Query: 942 YDRHPGGTGVSK 953
YDR+PGG G+++
Sbjct: 688 YDRYPGGIGLAE 699
>gi|433427421|ref|ZP_20407034.1| ATP-dependent helicase [Haloferax sp. BAB2207]
gi|432196363|gb|ELK52823.1| ATP-dependent helicase [Haloferax sp. BAB2207]
Length = 783
Score = 369 bits (946), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 243/770 (31%), Positives = 376/770 (48%), Gaps = 59/770 (7%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
+++E LR +GQ+ AR + L SAL+ GI +LY HQAE++
Sbjct: 3 DLIEWLRTRPYYEGQIRSRRRFEARAPAFAGVD--LEPRLASALEDRGIDRLYRHQAEAV 60
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLE-ALSHDLSSSALYMFPTKALAQDQLRAL--L 321
A G NVV+AT T+SGKSL Y +P E A+ H LY+ P AL DQL L L
Sbjct: 61 EAVRDGDNVVLATRTASGKSLAYTVPAFERAMDH--GGRTLYLGPQNALVADQLDTLSDL 118
Query: 322 AMTKAFDASIDIGVYDGDTTQKDRMWLRDN-ARLLITNPDMLHMSILPYHGQFSRILSNL 380
A F + + + Y G ++ ++ +R +L++NPDM+H ++LP+
Sbjct: 119 ARGLGFGSRVSVDQYTGRLSKSEKREVRKRMPTVLLSNPDMVHYALLPH---------AH 169
Query: 381 RLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFV 440
RL + F + VVIDE H Y+G FG H AL++RRL R+C +G+DP FV
Sbjct: 170 RLWEW---------FFSSLETVVIDEVHGYRGVFGSHVALLIRRLKRVCER-FGADPQFV 219
Query: 441 FSTATSANPREHCMELANL--STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMD 498
+AT NP EH + + L+ +D S + ++LWNP + D
Sbjct: 220 CCSATIGNPVEHAARITGEREDSFTLVDDDTSGTGETNWLLWNP----------PEYDNP 269
Query: 499 DTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LV 557
D + + S + E LF ++V G + +AF R+R+ E S + L H L
Sbjct: 270 DAGGSGRRRSGHV-ETKNLFVDLVARGHQTLAFTRARQAAERYASESASDLRSRGEHDLA 328
Query: 558 DSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASL 617
+ Y+A + RR IE G + GV +TNALELG+DVG +DV L G+PG+ S
Sbjct: 329 GEVAAYQASLTHDRRREIEAGLHDGDIAGVWSTNALELGVDVGGLDVVLIDGYPGTRMSA 388
Query: 618 WQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVC 677
WQQAGR+GR +RP+L V V E LDQY M +P + F E D +N +L H+ C
Sbjct: 389 WQQAGRAGRGDRPALVVLVGGEDQLDQYLMNHPAEFFDGDPERAVSDPENDHLLPSHVAC 448
Query: 678 AALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTIS 737
AA E+ LS DE FG+ ++ L+ G L+ + D + + G E P H +S
Sbjct: 449 AAAENWLS-TEDESKFGAPFPGIVSDLEADGTLARRETDDGLR--WTHDGGES-PQHAMS 504
Query: 738 IRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQ 797
+R I +++D +++E + + A + GAVY HQG TY V EL+L +A +
Sbjct: 505 LRTITDREVQLMDSRNDETIATLAFDDALRDAHPGAVYHHQGQTYEVAELDLDRDVARLR 564
Query: 798 KADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGS 857
Y+T+ D H++ + + +S + + T+ GF R
Sbjct: 565 PTWADYYTRV--LHDKHITVERDILSKPLSA--RSDVEVRFAEVTMRKQITGFERRDPKR 620
Query: 858 GIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQ---------NFSFRSGLHAASHALL 908
G L LP+ S ++A++ VP V++ + + ++ F G+HAA H ++
Sbjct: 621 GTTIGQQLLDLPETSLRTKALYFTVPGDVESEMRELSSDRAEGRDYGFNGGIHAAEHGMI 680
Query: 909 HVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDM 958
+ P+ + C+ D+ P+ + I +YD HPGG G+++ D+
Sbjct: 681 SLFPLRLLCDRGDIG-GLSTPYHAHTDQSTIFIYDGHPGGVGIARAGYDI 729
>gi|269129014|ref|YP_003302384.1| DEAD/DEAH box helicase domain-containing protein [Thermomonospora
curvata DSM 43183]
gi|268313972|gb|ACZ00347.1| DEAD/DEAH box helicase domain protein [Thermomonospora curvata DSM
43183]
Length = 807
Score = 368 bits (945), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 259/768 (33%), Positives = 378/768 (49%), Gaps = 90/768 (11%)
Query: 218 GQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVAT 277
G++ HV + R P L GI + HQ ++ + AG++V++AT
Sbjct: 36 GRVTHVHSVPPRPGHRAPWPPWTSRTLVDRLALAGIQAPWRHQVQAAELARAGRSVIIAT 95
Query: 278 MTSSGKSLCYNLPVLEA-LSHDLSSSA-----------------------LYMFPTKALA 313
T+SGKSL Y LP L A L D A LY+ PTKALA
Sbjct: 96 GTASGKSLAYLLPALTAVLGEDAGERAPAGVPSGRERPASAARDGGEGTVLYLAPTKALA 155
Query: 314 QDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQF 373
DQLR+L ++ + YDGDT +R W+R A ++TNPDMLH SILP H ++
Sbjct: 156 ADQLRSLRSLRLTRLRA---ATYDGDTPPDERGWVRKYANYVLTNPDMLHRSILPGHARW 212
Query: 374 SRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVY 433
+ L LR +V+IDEAH Y+G FG H A +LRRL RLC+ Y
Sbjct: 213 AAFLRRLR-------------------YVIIDEAHGYRGVFGSHVAQVLRRLRRLCAR-Y 252
Query: 434 GSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKS 493
G+ P F+ ++AT+A P L L +E + +D SP A F LW P
Sbjct: 253 GALPVFILASATTAEPAVTARRLTGLP-VEAVTDDASPRAAAAFALWEP----------P 301
Query: 494 QTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETA 553
TD+ A + S+ +E + L A++V ++ +AF RSR+ E + R L+E+A
Sbjct: 302 LTDLRGEHGAPLRRSA-TAETAELLADLVAEDVQTLAFVRSRRGAESIALSARRALQESA 360
Query: 554 PHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGS 613
P L D + YR+GY+ E+RR +E ++ G+A+TNALELG+DV +D L G+PG+
Sbjct: 361 PDLADRVAAYRSGYLPEERRALEEALRSRRIIGLASTNALELGVDVSGLDAVLVCGWPGT 420
Query: 614 IASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQ 673
ASLWQQAGR+GR R +LAV VA + PLD Y + +PE +F +P+E +D N VL
Sbjct: 421 RASLWQQAGRAGRAGREALAVLVARDDPLDTYLVHHPEAIFGTPVEATVLDPDNPYVLAP 480
Query: 674 HLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPS 733
HL AA E PL+ D + FG + L G L A + + E+
Sbjct: 481 HLCAAAAESPLTEA-DAELFGPAAGEVLAELVESGMLR------RRATGWYWTRRERACD 533
Query: 734 HTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKI 793
T IR E +V++ + +L ++E A V+EGAVY+HQG ++LV+ L+L +
Sbjct: 534 LT-DIRGAGGEPIQVVEASTGRLLGTVDEPSAHSTVHEGAVYLHQGESFLVRTLDLEDAV 592
Query: 794 ALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALAC--TVTTT----W 847
AL + A+ Y T RD TDI +I + T +A C TV T
Sbjct: 593 ALVEPAEADYSTVARDVTDI-----------RIIETLRTCAWGEARLCFGTVEVTRQVVA 641
Query: 848 FGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHAL 907
+ RL SG + L LP + ++AVW + V++ HAA HA
Sbjct: 642 YQMRRLL--SGEMLGEKPLDLPPRTLRTRAVWWTLSPGQAGVLDAA-DLPGAAHAAEHAS 698
Query: 908 LHVVPIYVRCNFSDLAPECPNPH-DSRYFPERILLYDRHPGGTGVSKQ 954
+ ++P++ C+ D+ H D+ + +YD H GG G +++
Sbjct: 699 IGLLPLFATCDRWDIGGVSTALHPDTGLL--TVFVYDGHEGGAGFAER 744
>gi|438002022|ref|YP_007271765.1| ATP-dependent RNA helicase [Tepidanaerobacter acetatoxydans Re1]
gi|432178816|emb|CCP25789.1| ATP-dependent RNA helicase [Tepidanaerobacter acetatoxydans Re1]
Length = 554
Score = 368 bits (945), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 207/566 (36%), Positives = 326/566 (57%), Gaps = 47/566 (8%)
Query: 235 EIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEA 294
+ P+ L SALK GI +LYSHQ +++ A N+ V T T+SGKSLCYNLPVL
Sbjct: 35 DFPEYLNPKLVSALKKKGIYRLYSHQRKALDEVTAKNNITVVTPTASGKSLCYNLPVLND 94
Query: 295 LSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARL 354
L D +S A+Y+FPTKAL+QDQ+ L+ + +I YDGDT R+ +R + +
Sbjct: 95 LLADKNSRAIYLFPTKALSQDQVSELMNLVNVMGENIKTFTYDGDTPVNARVAIRKDGHI 154
Query: 355 LITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAF 414
++TNPDMLH ILP+H ++ ++ SNL ++VVIDE H Y+G F
Sbjct: 155 VVTNPDMLHTGILPHHTKWMKLFSNL-------------------KYVVIDEIHMYRGIF 195
Query: 415 GCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQ 474
G HTA +LRRL R+C YGSDP F+ +AT ANPRE ++ + + LI ++G+P +
Sbjct: 196 GSHTANVLRRLKRIC-RFYGSDPIFICCSATIANPRELAEKITE-TPMVLIDHNGAPSGE 253
Query: 475 KLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRS 534
K + +NP V+N R + SS + E L +++ ++ I F RS
Sbjct: 254 KNIIFYNP-----PVVN---------RQLGIRRSS-LLEAKTLALTFLKNKIQTIIFARS 298
Query: 535 RKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALE 594
R E++L+Y R+ + ++ P ++ + YR GY+ ++RR IE+ G++ GV +TNALE
Sbjct: 299 RLAVEVLLTYLRDEM-KSIPGGMNLVKGYRGGYLPKERREIEKGLRDGEIFGVVSTNALE 357
Query: 595 LGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLF 654
LG+D+G++D ++ G+PGS+AS WQQ GR+GRR S ++ VA PLDQ+ + +PE F
Sbjct: 358 LGVDIGNLDASIITGYPGSVASTWQQTGRAGRRNSLSASILVASSSPLDQFIINHPEYFF 417
Query: 655 KSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDP 714
++ E I+ N +L H+ CAA E P + D + FG I + + +L +
Sbjct: 418 EASPEHGLINPNNLYILVSHIKCAAFELPFA---DGETFG---KENIYEILD--FLEGER 469
Query: 715 SLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN-EVLEEIEESKAFFQVYEGA 773
L + ++ E P+ +S+R+ +E + +ID+ + +V+ E+++S A ++E A
Sbjct: 470 ILRHVGGRWHWMA-ESFPAEEVSLRSASAENFVIIDITKDAKVIGEVDQSSAPMMIHEEA 528
Query: 774 VYMHQGHTYLVKELNLSSKIALCQKA 799
+Y+H G Y V++L+ K LC K+
Sbjct: 529 IYIHAGQQYQVEKLDYEEKKGLCSKS 554
>gi|333998565|ref|YP_004531177.1| dead/deah box helicase domain-containing protein [Treponema
primitia ZAS-2]
gi|333738605|gb|AEF84095.1| dead/deah box helicase domain protein [Treponema primitia ZAS-2]
Length = 817
Score = 368 bits (945), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 257/818 (31%), Positives = 398/818 (48%), Gaps = 122/818 (14%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E +E + K G + + A + V P L + L++ GI ++Y+HQ
Sbjct: 6 EKLEKILKDPGFAPYIAEERLLPATEGAFVPFPPDLDNRIVERLRARGIVEIYTHQGAVW 65
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAM- 323
A G+N VV T T+SGK+LCYNLP L+AL D + ALY+FPTKAL+QDQ L +
Sbjct: 66 EAVQQGRNAVVVTPTASGKTLCYNLPTLQALLRDDKARALYLFPTKALSQDQQSELNELI 125
Query: 324 ---TKAFDASIDIG-----------VYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPY 369
TK + D G YDGDT + R+ RD R++I+NPDMLH ILP
Sbjct: 126 GSPTKDGPGAPDEGPPGGPIPIKVSTYDGDTPESLRVAARDTGRIIISNPDMLHAGILPN 185
Query: 370 HGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLC 429
H ++ + SNL+ +VVIDEAHAY+G G H A +LRRL R+
Sbjct: 186 HPRWIKFFSNLK-------------------YVVIDEAHAYRGVLGSHVADVLRRLRRIA 226
Query: 430 SHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPT------ 483
+ YGS P F+ +AT ANPRE L + LI N+G+P +K +L+NP
Sbjct: 227 A-FYGSKPRFILCSATIANPRELAEALIG-DEVTLIDNNGAPRGEKRIILYNPPLVDAVQ 284
Query: 484 SCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLS 543
RSV+ +S+ M +++L + G++ I F SR E+ S
Sbjct: 285 GIRRSVVTESRRWM----------------LAFL-----KEGIKTILFAHSRIKTEVAAS 323
Query: 544 YTREILEETAPHLVDS----ICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDV 599
Y E L A D+ + YR G + +RR IE+ G + GV +TNALELGID+
Sbjct: 324 YVNEDL---ANFFTDNSRIRVEAYRGGLLPNERREIEKGLREGSIQGVVSTNALELGIDI 380
Query: 600 GHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIE 659
G +D ++ GFPGS S WQQ+GR+GRR S++V+VA PLDQ+ M PE F+ E
Sbjct: 381 GGLDASVVAGFPGSFNSFWQQSGRAGRRGGTSVSVFVASASPLDQFIMNDPEWFFRKSAE 440
Query: 660 CCHIDAQNHKVLEQHLVCAALEHPL---SLIYDEKYFGSGLSSGITTLKNRGYLSSDPSL 716
ID N +L H+ CAA E P ++ E+ FG + + L+ G +
Sbjct: 441 EARIDPDNPYILTDHVKCAAFELPFRDEAIAQGEEPFGKDVGEVLAFLEEEGVVRHTGGA 500
Query: 717 DSSAKIFE------------------------YIGHEKMPSHTISIRAIESERYEVIDMQ 752
S+ + P+ +S+R+ ++ ++D+
Sbjct: 501 VSAEGAASAESAVSAESAAAADADRERRQGRWHWADRSFPAEGVSLRSALADNVVILDVT 560
Query: 753 S--NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDY 810
N+V+ E++ A +++ AVY+H+G YLV+ L++ ++ AL ++AD+ YFT
Sbjct: 561 QGRNQVIGEMDRPSAKEMLFKNAVYIHRGRQYLVESLDIENRKALVREADVNYFTDGLVK 620
Query: 811 TDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDT------V 864
TDI V + IS K+ A+ + C + ++ R I F T
Sbjct: 621 TDIKVLTEDEEVTVTIS----GKSAARGILCDILVR----SQVARFKKIRFHTHENIGYG 672
Query: 865 ELYLPKYSYESQAVWIQVPQSVKA-VVEQNFS---FRSGLHAASHALLHVVPIYVRCNFS 920
E+ LP+ +++++ + + A V F+ S L A + H+ PI++ C+
Sbjct: 673 EIDLPEEEMQTRSLALLFGKDTGAGEVLAGFAEEEVGSILSGAGTLIKHIAPIFILCDSR 732
Query: 921 DL--APECPNPHDSRYFPERILLYDRHPGGTGVSKQVT 956
D+ A +PH + + +YD++PGGTG+++ ++
Sbjct: 733 DIGVAERVRDPH---FGIPALFIYDKYPGGTGLAEALS 767
>gi|367471414|ref|ZP_09471049.1| DEAD/DEAH box helicase [Patulibacter sp. I11]
gi|365813514|gb|EHN08777.1| DEAD/DEAH box helicase [Patulibacter sp. I11]
Length = 846
Score = 368 bits (945), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 257/802 (32%), Positives = 382/802 (47%), Gaps = 120/802 (14%)
Query: 228 ARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCY 287
AR L IP L + + L+ G+ +LY HQA ++ A A + VV T T+SGKSLC+
Sbjct: 31 ARAPRLEPIPADLHPDLVAGLRRRGVEQLYGHQARAV-ALPAERPFVVTTGTASGKSLCF 89
Query: 288 NLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMW 347
LP +EAL + AL+++PTKALAQDQ R+L A + + +YDGDT ++ R
Sbjct: 90 QLPAIEALLRAPRARALFLYPTKALAQDQARSLHAF--GLGDRLRVAIYDGDTPREARRD 147
Query: 348 LRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEA 407
+R A +++TNPDMLH+ ILP +S L++LR+ VVIDEA
Sbjct: 148 VRRRANVVLTNPDMLHVGILPRPDLWSEFLTHLRV-------------------VVIDEA 188
Query: 408 HAYKGAFGCHTALILRRLCRLCSHVYG-----------------------SDPSFVFSTA 444
H Y+G FG H + +LRRL R+ + P F+ ++A
Sbjct: 189 HVYRGVFGSHVSNVLRRLRRVAERQQAGRVASLARASGAGQVGLELPGTAAGPRFLLASA 248
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPT-------------------SC 485
T ANP EH L L + LI DGSP + +WNP
Sbjct: 249 TIANPVEHAQALTGLPDVALIDEDGSPGVTRQIAMWNPPLFDEDDDAVAVARRVRREDGV 308
Query: 486 LRSVLNKSQTDMDDTRN--AANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLS 543
++ + ++ D A + S + E + + A++V G+R I F RSRK E+V
Sbjct: 309 AQAPASNPDVELLDASELIAGRRRRSALGESAEMLADLVVAGVRTICFVRSRKGVEVVAR 368
Query: 544 YTREILEE-TAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHI 602
E L E P L + YRAGY R +E+ G++ V AT ALELGID+G +
Sbjct: 369 MAAEQLRERDRPDLARQVIAYRAGYTTGQRHELEQRLVDGEVRCVVATTALELGIDIGEL 428
Query: 603 DVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCH 662
D + + FPG++ASL Q GR+GRR LAVYVA E LDQYF ++P + P+E
Sbjct: 429 DACVVVTFPGTVASLRQMWGRAGRRGH-GLAVYVAGEDALDQYFCRHPGEFLGRPVEAAI 487
Query: 663 IDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKI 722
+ +N + HL+CAA E PL D G + L RG L +
Sbjct: 488 LHHENEPIHLAHLLCAAHEAPLDE-RDAATLGPRWRTFAEQLAERG------DLRERGGV 540
Query: 723 FEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTY 782
F G ++ P+ + +R+ S+R ++D + E L +E KA V++GAVY+H G Y
Sbjct: 541 FRLAGGDRFPAGELGLRSATSQRVVIVDGTTGEELGHVEHDKAPSTVHQGAVYLHLGQQY 600
Query: 783 LVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLT--KTTAQALA 840
V++L+L A+ + ++T+ + D +S +QL +T A A
Sbjct: 601 EVQDLDLDRGFAVVEPFSGNWWTEPKREID-------------VSFEQLLDHRTVASAAG 647
Query: 841 --------CTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQ 892
TVT T G+ R GSG + D + LP S+ ++AVW + P ++ + +
Sbjct: 648 EVPLSFGVVTVTDTVLGYQRRKVGSGEMIDLRTVDLPSVSFRTEAVWYE-PGALLGIDPR 706
Query: 893 NF---------------SFRS-----GLHAASHALLHVVPIYVRCNFSDLAPECPNPHDS 932
+F S LHAA HA + V+P+ C+ D+ N H
Sbjct: 707 VPVAGGPGGAGAAVPWGAFPSEHLLGALHAAEHAQIAVLPLLAMCDRWDVGGLSTNLHPQ 766
Query: 933 RYFPERILLYDRHPGGTGVSKQ 954
P I++Y+ H GG G+++Q
Sbjct: 767 SAGPA-IIVYEGHVGGVGIARQ 787
>gi|309810843|ref|ZP_07704644.1| putative DEAH-box helicase [Dermacoccus sp. Ellin185]
gi|308435149|gb|EFP58980.1| putative DEAH-box helicase [Dermacoccus sp. Ellin185]
Length = 846
Score = 368 bits (944), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 257/817 (31%), Positives = 385/817 (47%), Gaps = 114/817 (13%)
Query: 203 PLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAE 262
P + ++ LR G + HV AR+A L E PDA+ ++A + GI L+SHQ
Sbjct: 13 PEQWLDALRDA--GTGGVTHVRTRPAREASLAEWPDAVAPAVRAAFEGKGIHHLWSHQRT 70
Query: 263 SIMASLAGKNVVVATMTSSGKSLCYNLPVL------------------EALSHDLSSSAL 304
++ A ++VVVAT T+SGKSL Y +P+L AL+ ++ L
Sbjct: 71 ALDAVFERRHVVVATGTASGKSLAYQVPMLTAAVDGADFARRPGDPPVSALAAIRGATTL 130
Query: 305 YMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHM 364
Y+ PTKALA DQ L A+ I DGDT +R W+RD+A +++TNPD+LH
Sbjct: 131 YLSPTKALAADQRARLDALAIP---GARIATLDGDTPPDERRWIRDHAGIILTNPDLLHH 187
Query: 365 SILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRR 424
S+LP H ++S +LRL VVIDE H Y+G FG HTA ++RR
Sbjct: 188 SMLPAHERWSIFWRSLRL-------------------VVIDECHVYRGVFGAHTAGVIRR 228
Query: 425 LCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPT- 483
L R+ + YGS P+FV ++ATS P H L L ++ + +DGSP F LW P
Sbjct: 229 LRRVAAR-YGSHPTFVLASATSGEPAAHARALTGLD-VDAVTDDGSPSPALTFALWEPGP 286
Query: 484 ----------SCLRSVLNKSQTDMDDTRNAANKTSSP----------------------- 510
+ + S D D R+ ++P
Sbjct: 287 PPGAAEAMGEAVAAATDAMSDEDGDAARDGDAAQAAPGSAQDRGAAQEGGADDGLTVEDL 346
Query: 511 -----ISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETA--PHLVDSICVY 563
++E + LF E+V G++ +AF RSR E++ R L P LV Y
Sbjct: 347 GRRSAVAETADLFGELVGRGVQTLAFARSRVGVEVMADMARNRLWNHGFDPDLV---AAY 403
Query: 564 RAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGR 623
R GY+ E+RR +E G L GVAAT+ALELGIDV +D L G+PG++ASL QQ+GR
Sbjct: 404 RGGYLPEERRTVECGLRDGTLAGVAATSALELGIDVSGLDAVLLAGWPGTVASLHQQSGR 463
Query: 624 SGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHP 683
+GR R +LAV+VA + PLD Y + +P+ F P+E +D N VL L AA E P
Sbjct: 464 AGRSGRDALAVFVAADDPLDTYLVHHPDVFFDRPVEATVVDPSNPYVLGPQLASAAAELP 523
Query: 684 LSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIES 743
L+ DE FG+ + + L + L PS Y + P +S+R
Sbjct: 524 LT-AADEALFGADMWPLVEALVAQRVLRRRPS-------GWYWARDDRPGDHVSLRGDGG 575
Query: 744 ERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKY 803
+++ ++ VL ++ +A V+ GAVY+HQG T++V L+L A + + +
Sbjct: 576 SDVRIVESRTGAVLGTVDGERAHSSVFPGAVYVHQGRTFVVTSLDLDDGSAHVVRGNPGW 635
Query: 804 FTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQAL---ACTVTTTWFGFYRLWRGSGII 860
T R + + + +D+ A + V T F R SG +
Sbjct: 636 STAARSVSSFDI----------LEEDRSQTWGAVGVHYGTIRVRTQVTSFLRRLP-SGEV 684
Query: 861 FDTVELYLPKYSYESQAVWIQVPQS--VKAVVEQNFSFRSGLHAASHALLHVVPIYVRCN 918
L LP+ + ++ VW VP+ + A V S LHAA H + ++ + + +
Sbjct: 685 IGEHPLDLPERTLMTKGVWWTVPEEHLLDAGVTPE-SAPGALHAAEHCSIGLISLVAQGD 743
Query: 919 FSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
D+ H P +++YD PGG+G +++
Sbjct: 744 RWDVGGVSTALHPDTDMPT-VVVYDALPGGSGFAERA 779
>gi|448595723|ref|ZP_21653170.1| ATP-dependent helicase [Haloferax alexandrinus JCM 10717]
gi|445742177|gb|ELZ93672.1| ATP-dependent helicase [Haloferax alexandrinus JCM 10717]
Length = 783
Score = 367 bits (943), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 243/770 (31%), Positives = 375/770 (48%), Gaps = 59/770 (7%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
+++E LR +GQ+ AR + L SAL+ GI +LY HQAE++
Sbjct: 3 DLIEWLRTRPYYEGQIRSRRRFEARAPAFAGVD--LEPRLASALEDRGIDRLYRHQAEAV 60
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLE-ALSHDLSSSALYMFPTKALAQDQLRAL--L 321
A G NVV+AT T+SGKSL Y +P E A+ H LY+ P AL DQL L L
Sbjct: 61 EAVRDGDNVVLATRTASGKSLAYTVPAFERAMDH--GGRTLYLGPQNALVADQLDTLSDL 118
Query: 322 AMTKAFDASIDIGVYDGDTTQKDRMWLRDN-ARLLITNPDMLHMSILPYHGQFSRILSNL 380
A F + + + Y G ++ ++ +R +L++NPDM+H ++LP+
Sbjct: 119 ARGLGFGSRVSVDQYTGRLSKSEKREVRKRMPTVLLSNPDMVHYALLPH---------AH 169
Query: 381 RLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFV 440
RL + F + VVIDE H Y+G FG H AL++RRL R+C +G+DP FV
Sbjct: 170 RLWEW---------FFSSLETVVIDEVHGYRGVFGSHVALLIRRLKRVCER-FGADPQFV 219
Query: 441 FSTATSANPREHCMELANL--STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMD 498
+AT NP EH + + L+ D S + ++LWNP + D
Sbjct: 220 CCSATIGNPVEHAARITGEREDSFTLVDEDTSGTGETNWLLWNP----------PEYDNP 269
Query: 499 DTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LV 557
D + + S + E LF ++V G + +AF R+R+ E S + L H L
Sbjct: 270 DAGGSGRRRSGHV-ETKNLFVDLVARGHQTLAFTRARQAAERYASESASDLRSRGEHDLA 328
Query: 558 DSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASL 617
+ Y+A + RR IE G + GV +TNALELG+DVG +DV L G+PG+ S
Sbjct: 329 GEVAAYQASLTHDRRREIEAGLHDGDIAGVWSTNALELGVDVGGLDVVLIDGYPGTRMSA 388
Query: 618 WQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVC 677
WQQAGR+GR +RP+L V V E LDQY M +P + F E D +N +L H+ C
Sbjct: 389 WQQAGRAGRGDRPALVVLVGGEDQLDQYLMNHPAEFFDGDPERAVSDPENDHLLPSHVAC 448
Query: 678 AALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTIS 737
AA E+ LS DE FG+ ++ L+ G L+ + D + + G E P H +S
Sbjct: 449 AAAENWLS-TEDESKFGAPFPGIVSDLEADGTLARRETDDGLR--WTHDGGES-PQHAMS 504
Query: 738 IRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQ 797
+R I +++D +++E + + A + GAVY HQG TY V EL+L +A +
Sbjct: 505 LRTITDREVQLMDSRNDETIATLAFDDALRDAHPGAVYHHQGQTYEVAELDLDRDVARLR 564
Query: 798 KADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGS 857
Y+T+ D H++ + + +S + + T+ GF R
Sbjct: 565 PTWADYYTRV--LHDKHITVERDILSKPLSA--RSDVEVRFAEVTMRKQITGFERRDPKR 620
Query: 858 GIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQ---------NFSFRSGLHAASHALL 908
G L LP+ S ++A++ VP V++ + + ++ F G+HAA H ++
Sbjct: 621 GTTIGQQLLDLPETSLRTKALYFTVPGDVESEMRELSSDRAEGRDYGFNGGIHAAEHGMI 680
Query: 909 HVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDM 958
+ P+ + C+ D+ P+ + I +YD HPGG G+++ D+
Sbjct: 681 SLFPLRLLCDRGDIG-GLSTPYHAHTDQSTIFIYDGHPGGVGITRAGYDI 729
>gi|294947272|ref|XP_002785305.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus
ATCC 50983]
gi|239899078|gb|EER17101.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus
ATCC 50983]
Length = 1145
Score = 367 bits (943), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 245/736 (33%), Positives = 389/736 (52%), Gaps = 73/736 (9%)
Query: 248 LKSTGISKLYSHQAESIMA-SLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYM 306
+ + G KLY+HQ +I A +L +NV ++T TSSGKSL +NLP+L + ++ALY+
Sbjct: 113 ISAAGRLKLYTHQIRAIEAIALEERNVCISTATSSGKSLAFNLPILSYIDKHPDTTALYL 172
Query: 307 FPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSI 366
+PTKALAQDQLR L + + D I + DGD R R A++++TNPDMLH S+
Sbjct: 173 YPTKALAQDQLRVLKQLVEGTD--IVVTTLDGDCDTTAREVARSRAQVVLTNPDMLHCSL 230
Query: 367 LPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLC 426
LP H ++ R+L NL+ FVV+DE H Y+G+FG H A ++RRL
Sbjct: 231 LPQHKRYQRLLGNLK-------------------FVVVDECHTYRGSFGSHVANVIRRLR 271
Query: 427 RLC-------SHVYGSDPSFVFSTATSANPREHCMEL-----ANLSTLELIQNDGSPCAQ 474
R + D F+ +AT NP E L AN T + DG+P
Sbjct: 272 RAFDWHQNKRTETERRDLRFICCSATIGNPSELMANLTGHDIANGITTIGVDADGAPRGP 331
Query: 475 KLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSP-ISEVSYLFAEMVQHGLRCIAFCR 533
+ V+W P K+ TD +A +TS+ ++E S L A +VQ G+R I F R
Sbjct: 332 RWVVIWRPNDYSEKNAGKAGTD-----DAVKETSTGFVAETSKLMATLVQMGVRTICFAR 386
Query: 534 SRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNAL 593
R++ E++LS R ++++ + V S YR+GY + RR IE+ F ++ GV T+AL
Sbjct: 387 YRQMVEIMLSRVRALMKKGSEEQVVS---YRSGYTQDCRRGIEQQIFSHQVLGVICTSAL 443
Query: 594 ELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFE-GPLDQYFMKYPEK 652
ELG+D+G +D + +G+PGS SL QQ GR+GR R SL + V+ E P+DQ+F PE+
Sbjct: 444 ELGVDIGSLDCCISMGYPGSSHSLQQQFGRAGRSGRASLCILVSRETDPIDQWFSAKPER 503
Query: 653 LFKS--PIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDE--KYFGSGLSSGITTLKNRG 708
L ++ E + N ++L +HL+CA E + DE KY+ + + + T
Sbjct: 504 LMETLGQAEDAPVQWDNEQILPKHLLCADNEVEFRTV-DEVFKYWPPPVDNKLRT----- 557
Query: 709 YLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVID-----MQSNEVLEEIEES 763
+ + K ++ K P I++R+I++ +V+ + ++ +++I+ +
Sbjct: 558 --EYESMIKKVRKESPFV---KKPHSKINLRSIDNRSIKVVTPSADAREGDKQIDDIDYN 612
Query: 764 KAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYA 823
AFF +Y GA YM+QG Y + +L+L A+ + +Y+TK+RD TD+
Sbjct: 613 NAFFYLYPGATYMNQGTEYRIVDLDLRFDRAIARPMKHEYYTKSRDITDVLFLNIEKEAF 672
Query: 824 TKISKDQLTKTTAQALA------CTVTTTWFGFYRLWRGSGIIFDTV-ELYLPKYSYESQ 876
T+I +L+ +A V T +G+ + + +G I +T+ L LPK Y ++
Sbjct: 673 TQIPY-RLSNAPVEADVHLRFGRVEVCTEVYGYKKFNKHTGRIMETIGGLGLPKVKYFTK 731
Query: 877 AVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFP 936
A WI+ + A+ FR+ LH SH L V I++ C+ SD++ +CP+ D R P
Sbjct: 732 ATWIEFDKQF-ALQWDEGDFRAALHTFSHLWLRAVRIHLLCDQSDVSTQCPSVDDVRERP 790
Query: 937 ERILLYDRHPGGTGVS 952
+++D GG GV+
Sbjct: 791 YTAVVFDTKIGGIGVA 806
>gi|72160527|ref|YP_288184.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal, partial
[Thermobifida fusca YX]
gi|71914259|gb|AAZ54161.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Thermobifida fusca YX]
Length = 761
Score = 367 bits (943), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 254/762 (33%), Positives = 374/762 (49%), Gaps = 77/762 (10%)
Query: 206 MVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIM 265
+++ LR+ Q+ HVE ++ V P + +G++K +SHQ +
Sbjct: 7 VLQRLRRDHTRTAQVTHVESLTNSPGVRENWPGWASPAVVERMVKSGVAKPWSHQVRAAN 66
Query: 266 ASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTK 325
+ +G NV++AT SSGKSL + LP A++ S LY+ PTKALA DQ R L +
Sbjct: 67 LAHSGSNVIIATGISSGKSLGFLLPCTAAIAE--GGSVLYLAPTKALAADQERKLAELAL 124
Query: 326 AFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAF 385
+ VYDGDT ++R W R +A ++TNPDMLH SI+ H ++ L L
Sbjct: 125 P---GVRAAVYDGDTPMEERSWARAHANYVLTNPDMLHRSIVARHPVWAGFLRRLS---- 177
Query: 386 SLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTAT 445
+VV+DEAH Y+G FG H A ILRRL R+C YG++P F+ ++AT
Sbjct: 178 ---------------YVVVDEAHHYRGVFGSHVAQILRRLRRVCG-CYGAEPRFILASAT 221
Query: 446 SANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAAN 505
+A P E +L L + + DGS A F L P + K+ R A
Sbjct: 222 TATPAETAQQLTGLPVVA-VTGDGSARASLRFALVEP-----ELTEKTGEQGAPLRRTAT 275
Query: 506 KTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELV-LSYTREILEETAPHLVDSICVYR 564
++ L A++V H + + F RSR+ ELV L+ R + + P L + YR
Sbjct: 276 AVAA------ELLADLVSHEVSTLVFVRSRQAAELVALAAQRALADAGRPELARRVAAYR 329
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
GY+AEDRRR+E+ G+L G+A TNALELG+DV +D + G+PG+ ASLWQQAGR+
Sbjct: 330 GGYLAEDRRRLEQRLRSGELLGLATTNALELGVDVSGLDAVVLAGWPGTRASLWQQAGRA 389
Query: 625 GRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
GR R +LAV+VA + PLD Y + +P+ +F +E +D N VL HL AA E PL
Sbjct: 390 GRSGRDALAVFVARDDPLDTYLVHHPDAIFGQDVEATVLDPDNPYVLAPHLCAAAEELPL 449
Query: 685 SLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESE 744
+ + FG S + L R L + + S IR
Sbjct: 450 A-PEELPIFGPNASDVVAELVGR-------GLLRRRPRGWFWTRRERASTLADIRGSGGA 501
Query: 745 RYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYF 804
+++D S +L ++E+ A V+ GAVY+HQG +Y+V L+L S IAL + D Y
Sbjct: 502 PVQIVDEDSGVLLGSVDEATASSAVHPGAVYLHQGFSYVVSALDLESGIALVRGEDPGYS 561
Query: 805 TKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRG-------- 856
T R+ T I + TTA+ T FG R+ R
Sbjct: 562 TWAREVTHIDI-----------------LTTAREERWGEATVCFGKVRVARQVVSYLRRD 604
Query: 857 --SGIIFDTVELYLPKYSYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPI 913
+G + D L LP+ ESQAVW V P + + + ++ R HAA HA + ++P+
Sbjct: 605 LRTGAVLDERPLELPERVLESQAVWWTVGPDAEERLRDEGVELRGAAHAAEHASIGLLPL 664
Query: 914 YVRCNFSDLAPECPNPH-DSRYFPERILLYDRHPGGTGVSKQ 954
+ C+ D+ H D+ + +YD H GG G +++
Sbjct: 665 FATCDRWDIGGVSTALHPDTGLL--TVFVYDGHEGGAGFAER 704
>gi|389774880|ref|ZP_10192999.1| Distinct helicase family with a unique C-terminal domain including
a metal-binding cysteine cluster [Rhodanobacter
spathiphylli B39]
gi|388438479|gb|EIL95234.1| Distinct helicase family with a unique C-terminal domain including
a metal-binding cysteine cluster [Rhodanobacter
spathiphylli B39]
Length = 802
Score = 367 bits (942), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 242/768 (31%), Positives = 376/768 (48%), Gaps = 105/768 (13%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
+ AR+ +P L AL + GI +LYSHQAE+ A+ +G +V + T T+SGKSL
Sbjct: 42 VPAREGSFAPLPADLPPALAQALHTRGIEQLYSHQAEAWTATQSGAHVAIVTPTASGKSL 101
Query: 286 CYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDR 345
CY LPV+ A D + ALY+FPTKALAQDQ+ LL + KA + + +DGDT R
Sbjct: 102 CYTLPVISAAMQD-KAKALYLFPTKALAQDQVAELLELNKAGELGVKAFTFDGDTPGDAR 160
Query: 346 MWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVID 405
+R + ++++NPDMLH +ILP+H ++++ NLR +VVID
Sbjct: 161 QAIRLHGDIVVSNPDMLHQAILPHHTKWAQFFENLR-------------------YVVID 201
Query: 406 EAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELI 465
E H Y+G FG H A ++RRL R+C+ YG P F+ +AT NP+EH L + I
Sbjct: 202 EVHTYRGVFGSHVANVIRRLKRVCA-FYGVTPQFILCSATIGNPQEHAEALIE-DAVTAI 259
Query: 466 QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHG 525
G+P + +LWNP V+N R+ N+ I+ ++ ++ G
Sbjct: 260 TESGAPTGDQHVLLWNP-----PVINPDLGLRASARSQTNR----IARLA------IKSG 304
Query: 526 LRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLC 585
L+ + F +SR + E++ Y +++ + P I YR GY+ ++RR ER+ G +
Sbjct: 305 LKTLVFAQSRSMVEVLTRYLKDVFDHD-PRKPPRIRAYRGGYLPKERRAAEREMRAGSID 363
Query: 586 GVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQY 645
G+ +T+ALELG+D+G +DV + G+PGS+A+ WQ+ GR+GRR++ +L V VA PLDQY
Sbjct: 364 GIVSTSALELGVDIGSLDVVVLNGYPGSVAATWQRFGRAGRRQQSALGVLVASSDPLDQY 423
Query: 646 FMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLK 705
+++PE + E I +L H+ CAA E P I DE FG+ +++ L
Sbjct: 424 LVRHPEFFQDATPEHARIQPDQPLILLDHIRCAAFELP--FIGDE-MFGTEVATPWLDL- 479
Query: 706 NRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNE--VLEEIEES 763
L + L E+I + P+ +S+R++ + V+D ++ E++ S
Sbjct: 480 ----LGEEGVLHREGDRREWIA-DSYPAIAVSLRSVADGNFVVVDRTDGRQTIIAEVDYS 534
Query: 764 KAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHV-------- 815
A +YEGA++M Q Y V++L+ + A + + Y+T DYT + V
Sbjct: 535 AAAVTLYEGAIHMIQSLPYQVEKLDWEGRKAYVTRTQVDYYTDAIDYTRLKVLDCFDSSH 594
Query: 816 SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYES 875
+G A+ ++ + R + I + V LP +
Sbjct: 595 AGCGQAHHGEVH-------------VVRRVPGYKKIRFYSHENIGYGPVT--LPDQELHT 639
Query: 876 QAVWIQVPQSV-KAVVEQNFSFRSGLHAASHALLHVVPI--------------------- 913
AVW Q+PQ+V A EQ G A++A LH+V
Sbjct: 640 TAVWWQLPQAVLDAAFEQRQQALDGFLGAAYA-LHIVATVAVMAEARDLQKSVGSGDGAW 698
Query: 914 YVRCNFS--------DLAPECPNPHDSRYFPERILLYDRHPGGTGVSK 953
+V +FS D P P P F + LYD PGG G S+
Sbjct: 699 FVSADFSGRGQIRGNDGQPATPAP--GAPFTPTVYLYDAFPGGIGQSE 744
>gi|383315467|ref|YP_005376309.1| helicase family protein with metal-binding cysteine cluster
[Frateuria aurantia DSM 6220]
gi|379042571|gb|AFC84627.1| helicase family protein with metal-binding cysteine cluster
[Frateuria aurantia DSM 6220]
Length = 803
Score = 367 bits (942), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 240/773 (31%), Positives = 381/773 (49%), Gaps = 103/773 (13%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATM 278
++ V D+ AR+ +P AL ++AL+ GI++LYSHQAE+ A++AG+++ VAT
Sbjct: 36 RITGVLDLPAREGRHAPLPAALPPKLRTALEQRGINQLYSHQAEAWAAAVAGRHLAVATP 95
Query: 279 TSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDG 338
T+SGKSLCY LPVL A + + S LY+FPTKALAQDQ+ LL + +A D + +DG
Sbjct: 96 TASGKSLCYTLPVLSAAMQEQAKS-LYLFPTKALAQDQVAELLELNRAGDLGVKAFTFDG 154
Query: 339 DTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLF 398
DT R +R + ++++NPDMLH +ILP+H +++ NLR
Sbjct: 155 DTPGDARQAVRLHGDIVVSNPDMLHQAILPHHTKWAGFFENLR----------------- 197
Query: 399 IRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELAN 458
+VVIDE H Y+G FG H +LRRL R+C+ YGS P F+ +AT NP EH L
Sbjct: 198 --YVVIDEVHTYRGVFGSHVVNLLRRLKRICA-FYGSTPQFILCSATIGNPVEHAGNLIE 254
Query: 459 LSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLF 518
+ + I G+PC + +LWNP V+N R+ +N+ +
Sbjct: 255 -APVSAITESGAPCGPRQVLLWNP-----PVINPDLGLRASARSQSNRIAR--------- 299
Query: 519 AEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERD 578
++ GL+ + F +SR + E++ Y +++ + P L I YR GY+ DRR ER+
Sbjct: 300 -AAIRAGLKTLIFAQSRTMVEVLTKYLKDVFDHD-PRLPPRIRAYRGGYLPGDRREAERE 357
Query: 579 FFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAF 638
G++ G+ +T+ALELG+D+G +D+ + G+PGSIA+ WQ+ GR+GRR + SL V VA
Sbjct: 358 MRAGRVDGIVSTSALELGVDIGSLDLVILNGYPGSIAACWQRIGRAGRRRQASLGVLVAG 417
Query: 639 EGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLS 698
PLDQY +++PE ++P E + +L H+ CAA E L ++ ++
Sbjct: 418 SDPLDQYLVRHPEFFAQAPPEQARVAPDQPLILLDHIRCAAFE--LGFRKGDRLGPVEVA 475
Query: 699 SGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNE--V 756
+ L+ G L + + +E+I + P+H +S+R++ + V+D +
Sbjct: 476 PWLELLEEDGVLHRE------NERWEWIA-DSYPAHAVSLRSVADGNFVVVDRTGGRQTI 528
Query: 757 LEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDI--- 813
+ E++ S A +YEGA++M Q Y V+ L+ + A ++ + Y+T D+T +
Sbjct: 529 IAEVDYSAAAMTLYEGAIHMVQSTPYQVERLDWEGRKAYVRRTHVDYYTDAIDHTRLKPL 588
Query: 814 ----HVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLP 869
H G +T + + + R + I + + LP
Sbjct: 589 DCFGHAPCGAG------------QTRHGEVHVVRRISGYKKIRYYSHENIGYGPIN--LP 634
Query: 870 KYSYESQAVWIQVPQSVKAVVEQNFSFRS----GLHAASHALLHVVPIYVRCNFSDLAPE 925
+ AVW Q+P + A+ +F R G A++AL V + V DL
Sbjct: 635 DQELHTTAVWWQLPPGMLAL---HFDHRQQAMDGFLGAAYALHIVATVAVMAEGRDLQKS 691
Query: 926 CPN--------------------------PHDSRYFPERILLYDRHPGGTGVS 952
N P F + LYD PGG G+S
Sbjct: 692 VGNGDGTWSATADADGRAHLQDAGGSQLPPETLLDFSPTVFLYDAFPGGIGLS 744
>gi|239909232|ref|YP_002955974.1| helicase [Desulfovibrio magneticus RS-1]
gi|239799099|dbj|BAH78088.1| putative helicase [Desulfovibrio magneticus RS-1]
Length = 995
Score = 367 bits (941), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 238/743 (32%), Positives = 374/743 (50%), Gaps = 81/743 (10%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+VH + AR AV E L + GI LYSHQA++ + AG++V VAT T
Sbjct: 52 VVHHRVLPARPAVFAEPTRPFSRAVAGLLTAKGIPALYSHQAKATDLARAGRHVAVATPT 111
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL--LAMTKAFDASIDIGVYD 337
+SGK++ Y LPVLE + + S A++++P KALAQDQ +A+ LA + A +YD
Sbjct: 112 ASGKTMTYLLPVLEEVIRNPDSRAIFLYPLKALAQDQQKAIRELAASLPESARPTTAIYD 171
Query: 338 GDTTQKDRMWLRDNA-RLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIF 396
GDT+ R +RDN +LITNP+MLH+S+LP H +S + + L
Sbjct: 172 GDTSPHFRRKIRDNPPHILITNPEMLHLSLLPNHENWSTLFAGLS--------------- 216
Query: 397 LFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMEL 456
VV+DE H Y+G G H A + RRL R+C +G+DP++VFS+AT NP + +L
Sbjct: 217 ----HVVVDEMHTYRGVMGSHMAHVFRRLTRVCRR-FGTDPAYVFSSATIGNPGQLAEDL 271
Query: 457 ANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSY 516
L + + G+P A + F+ NP S +
Sbjct: 272 TGLP-VATVTESGAPTAARHFLFLNPEQ------------------------SAATTAVM 306
Query: 517 LFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIE 576
L A ++ GLR I + +SRK+ EL+ + I E+ P+ + YR+G++ E+RR IE
Sbjct: 307 LLAAALKRGLRTIVYTQSRKMTELISLW---IKEKAGPY-ASRVSAYRSGFLPEERRDIE 362
Query: 577 RDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYV 636
G+L GV +T+ALELGID+G +D+ + G+PGS+ S WQ+ GR GR R S V +
Sbjct: 363 AAMASGRLLGVVSTSALELGIDIGGLDLCILCGYPGSVMSAWQRGGRVGRAGRESAVVLI 422
Query: 637 AFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSG 696
A E LDQYFM++P + F P E I+ N + +HL CAA E P+ L D +G
Sbjct: 423 AGEDALDQYFMRHPAEFFDRPPESAVINPANPAIAAKHLECAAAELPIELT-DPLLAEAG 481
Query: 697 LSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEV 756
+ + L+++G L D + Y K P +++R + V
Sbjct: 482 IRAEAERLEDKGLLLRD------REGTRYFAARKRPHRDVNLRGSGG---QFTIEAGGAV 532
Query: 757 LEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVS 816
+ +I+E +A+ + + GAVY+H+G +YLV+ L++ + + + + Y+T+ R +
Sbjct: 533 IGQIDEMRAYRETHPGAVYIHRGVSYLVESLDIPERRVVVAQGTVDYYTRARGQKTTEI- 591
Query: 817 GGNNAYATKISKDQLTKTTAQALAC-----TVTTTWFGFYRLWRGSGIIFDTVELYLPKY 871
D L + T + VT T G+ R G + V L LP
Sbjct: 592 -----------LDVLGEKTVNGVPVFLGRLKVTETVTGYERRRARGGQLLSIVPLDLPPM 640
Query: 872 SYESQAVWIQVPQSVKAVVEQN-FSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPH 930
+E++ W +PQ V+A +++ F F +HA HA++ ++P+ V + +DL P
Sbjct: 641 VFETEGFWWVIPQDVQAELDKRLFHFMGAIHAMEHAMIGILPLLVLTDRNDLG-GISTPL 699
Query: 931 DSRYFPERILLYDRHPGGTGVSK 953
+ + +YD PGG G+++
Sbjct: 700 HPQVGRACVFVYDGAPGGVGLTR 722
>gi|257069719|ref|YP_003155974.1| helicase family protein with metal-binding cysteine cluster
[Brachybacterium faecium DSM 4810]
gi|256560537|gb|ACU86384.1| helicase family protein with metal-binding cysteine cluster
[Brachybacterium faecium DSM 4810]
Length = 833
Score = 367 bits (941), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 254/809 (31%), Positives = 383/809 (47%), Gaps = 128/809 (15%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+ HVE AR P L GI+ + HQ ++ + G++VV+AT T
Sbjct: 23 LTHVEQRPARSGRRGSFPQWTDPRLVQHLAERGITAPWIHQEQAAQLAHGGQDVVLATAT 82
Query: 280 SSGKSLCYNLPVLEALS---HDLSS---SALYMFPTKALAQDQLRALLAMTKAF---DAS 330
+SGKSL Y LPVL A+ HD + +ALY+ PTKALA DQL + AM DA
Sbjct: 83 ASGKSLAYLLPVLTAIGAREHDPEARRATALYLSPTKALAADQLTNITAMADGAGIRDAR 142
Query: 331 IDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTT 390
+ VYDGDT + R W+R + +++TNPDMLH +LP H Q++
Sbjct: 143 V--AVYDGDTPAEQRRWVRRHGTVVLTNPDMLHFGLLPGHEQWAHF-------------- 186
Query: 391 EVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPR 450
F +R+VVIDE H+Y+G FG H ++++RRL R+ +H Y +DP+F+ ++AT+ANP
Sbjct: 187 -----FRALRYVVIDECHSYRGVFGSHVSMVVRRLRRIAAH-YRADPTFILASATTANPE 240
Query: 451 EHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLR----------------------- 487
L +E + DGSP A LW P + R
Sbjct: 241 LSASRLIGRD-VEPVTEDGSPRAGLTIGLWEPGTRTRVDGRGDPARWDDGPGQATEGGDA 299
Query: 488 ---SVLNKSQTDMDDTRNAANKTSSPI-----SEVSYLFAEMVQHGLRCIAFCRSRKLCE 539
D D + A +T P+ SE + L A++V+ ++ + F RSR+ E
Sbjct: 300 EGEETDGADGADGVDGADGAGRTEEPLRRSATSEAAALLADLVERDVQTLVFARSRRGAE 359
Query: 540 LVLSYTREILEETA-----PHLVDS---ICVYRAGYVAEDRRRIERDFFGGKLCGVAATN 591
LV S R +LE+ A P L D + YR GY+A +RR +E G L +A+TN
Sbjct: 360 LVSSGARRLLEQKAEHTHAPQLADRAGRVAAYRGGYLARERRELEDALRSGALKALASTN 419
Query: 592 ALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERP---SLAVYVAFEGPLDQYFMK 648
ALELGID+ +D + G+PG+ ASLWQQ GR+GRR+ +LA++VA E PLD Y +
Sbjct: 420 ALELGIDIAGLDAVVVAGWPGTRASLWQQFGRAGRRQDADGGALALFVAREDPLDTYVVH 479
Query: 649 YPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEK-YFGSGLSSGITTLKNR 707
+PE +F + +E D N V+ HL AA E L++ E FG +TTL R
Sbjct: 480 HPETIFGAEVEAAVFDPGNPYVMTPHLCAAAAE--LAIRDGEAGIFGPTARDLLTTLAAR 537
Query: 708 GYLSSDPSLDSSAKIFEYIGHEKMPSHTIS-IRAIESERYEVIDMQSNEVLEEIEESKAF 766
G L S A + + E +H ++ +R E +++ + +L ++ + A
Sbjct: 538 GVLR------SRATGWYWTMTES--AHQLTDLRGSGGEPVRIVEQGTGSLLGTVDAASAH 589
Query: 767 FQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKI 826
QV++GAVY+HQG Y+V L++ +A + D + T + + + +
Sbjct: 590 TQVHDGAVYLHQGANYVVDHLDVEQSVAFVHREDPLHTTHPQSVSTLRI----------- 638
Query: 827 SKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELY-----------------LP 869
+ T + L W G RL G+ + D V Y LP
Sbjct: 639 ------RQTDREL------PWEGGVRLCFGTVDVTDQVTGYQVRDVFTQAVLAQHPLDLP 686
Query: 870 KYSYESQAVWIQVPQSVKAVVE-QNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPN 928
+ ++AVW +P+ E LHAA HA + ++P+ C+ D+
Sbjct: 687 PRTLTTKAVWWVIPRERTDAAEIPGEELPGALHAAEHAAISMLPLLATCDRWDIGGLSAA 746
Query: 929 PHDSRYFPERILLYDRHPGGTGVSKQVTD 957
H+ P I +YD PGG G +++ D
Sbjct: 747 QHEDTGEPT-IFVYDGAPGGAGFAERGAD 774
>gi|336326563|ref|YP_004606529.1| ATP-dependent helicase [Corynebacterium resistens DSM 45100]
gi|336102545|gb|AEI10365.1| ATP-dependent helicase [Corynebacterium resistens DSM 45100]
Length = 786
Score = 366 bits (940), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 261/756 (34%), Positives = 377/756 (49%), Gaps = 56/756 (7%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E++ LR + S+ HVE+I AR + ++ PD + L GI + +SHQ E
Sbjct: 13 EILAELRTAL-SRSTCTHVENIPARISTPMDWPDWAAPSLVEFLVDEGIRQPWSHQVEMA 71
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDL-SSSALYMFPTKALAQDQLRALLAM 323
AG++VV AT T+SGKSL Y LP+L L+ ++SALY+ PTKALAQDQ A+ M
Sbjct: 72 EHIHAGRDVVCATGTASGKSLGYQLPILSELAQPGNTASALYISPTKALAQDQRAAIAQM 131
Query: 324 TKAFD--ASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLR 381
A A + + YDGDT + R +R+ AR+++TNPDMLH SIL + R L +L+
Sbjct: 132 CAASSELADVVVATYDGDTPPEARRVIREQARVIVTNPDMLHASILGNPQVWGRFLRSLK 191
Query: 382 LIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVF 441
FVVIDE H Y+G FG H +L+LRRL RLC P
Sbjct: 192 -------------------FVVIDECHTYRGVFGAHVSLVLRRLLRLCQL----KPVVAL 228
Query: 442 STATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTR 501
++ATS +P H L S + + NDGSP LW P L + ++ + R
Sbjct: 229 ASATSVDPAAHAERLTGRSEIVAVTNDGSPRGSTTVALWEP-GLLPDMKGENGAPV---R 284
Query: 502 NAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSIC 561
AAN +E + + ++ HG R + F RSR+ E V E L
Sbjct: 285 RAAN------TEAAEIMGRVIAHGARTLTFARSRRGAETVAMGAAEQLSSMGRAADAVRV 338
Query: 562 V-YRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQ 620
YRAGY AEDRR +ER G+L GVA+TNALELGIDVG +D + GFPG+IAS QQ
Sbjct: 339 AAYRAGYTAEDRRALERRLDNGELLGVASTNALELGIDVGGLDCVITSGFPGTIASFRQQ 398
Query: 621 AGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAAL 680
AGR+GRR + +L + V + P+D Y + +PE L P+E D N +L HLVCAA
Sbjct: 399 AGRAGRRGQSALVMLVGADDPMDTYLVHHPEALLNRPVENTVFDPTNPYILADHLVCAAA 458
Query: 681 EHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRA 740
E PLS ++ G L + L + G L P IF + K +SIR
Sbjct: 459 EKPLSDAEVTQWQGEQL---VQQLISAGRLKRRPK-----GIFANLTVAKEVHAGMSIRG 510
Query: 741 IESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKAD 800
+ +++ + +L E++ +A V+ GAVY+HQG TY+V L+L + +A +
Sbjct: 511 GAVKSVAIVESSTGRLLGEVDAGRAASDVHTGAVYLHQGETYVVDNLDLEANVAWVRADF 570
Query: 801 LKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGII 860
+Y T+ TDI V +++ ++ TVT YR G I
Sbjct: 571 PEYSTQVVRETDIRVV--RTRRTQRLADGVWLADVDVEVSHTVTG-----YRKRLPGGEI 623
Query: 861 FDTVELYLPKYSYESQAVWIQV-PQSVKAVVE-QNFSFRSGLHAASHALLHVVPIYVRCN 918
+ V L +P ++AV V P+ +K + ++ LHAA HA + ++P+ C+
Sbjct: 624 LEVVPLDVPPERLFTRAVAYTVDPEVLKGEIGLPEPTWPGALHAAEHAAIGMLPLIATCD 683
Query: 919 FSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
D+ H P + +YD + GG G +++
Sbjct: 684 RWDIGGVSTVLHQDTGLPT-VFVYDGYAGGAGFAER 718
>gi|448608880|ref|ZP_21660159.1| ATP-dependent helicase [Haloferax mucosum ATCC BAA-1512]
gi|445747257|gb|ELZ98713.1| ATP-dependent helicase [Haloferax mucosum ATCC BAA-1512]
Length = 783
Score = 366 bits (939), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 244/770 (31%), Positives = 375/770 (48%), Gaps = 59/770 (7%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
+++E LR +GQ+ AR +I AL SAL++ GI +LY HQA+++
Sbjct: 3 DLIEWLRARPYYEGQIAAHRRFDARDPAFADI--ALEPRLSSALETRGIDRLYRHQAKAV 60
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLE-ALSHDLSSSALYMFPTKALAQDQLRAL--L 321
A G NVV+AT T+SGKSL Y +P E A+ H LY+ P AL DQL L L
Sbjct: 61 EAVRDGDNVVLATRTASGKSLAYTIPAFERAMDH--GGRTLYLGPQNALVADQLETLSDL 118
Query: 322 AMTKAFDASIDIGVYDGDTTQKDRMWLRDN-ARLLITNPDMLHMSILPYHGQFSRILSNL 380
A F + + + Y G + ++ +R +L++NPDM+H ++LP+
Sbjct: 119 AHGLGFGSRVSVDQYTGRLSNSEKREVRKRMPTVLLSNPDMVHYALLPH---------AH 169
Query: 381 RLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFV 440
RL + F + VVIDE H Y+G FG H AL+LRRL R+C +GSDP FV
Sbjct: 170 RLWEW---------FFSSLETVVIDEVHGYRGVFGSHVALLLRRLKRVCER-FGSDPQFV 219
Query: 441 FSTATSANPREHCMELANL--STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMD 498
+AT NP EH + S+ L+ D S + +VLWNP + +
Sbjct: 220 CCSATIGNPVEHAARITGEAESSFALVDEDASGTGETHWVLWNP----------PEYETP 269
Query: 499 DTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LV 557
D + + S + E LF ++V G + + F R+R+ E + + L H L
Sbjct: 270 DAGGSGRRRSGHV-ETKNLFVDLVARGHQTLTFTRARQAAERYATESASDLRSRGEHELA 328
Query: 558 DSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASL 617
I Y+A + RR IE G + GV +TNALELG+DVG +DV L G+PG+ S
Sbjct: 329 GEIAAYQAALTNDRRREIESGLNDGDISGVWSTNALELGVDVGGLDVVLIDGYPGTRMSA 388
Query: 618 WQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVC 677
WQQAGR+GR ERP+L V V E LDQY + +P + F E D +N +L H+ C
Sbjct: 389 WQQAGRAGRGERPALVVLVGGEDQLDQYLLNHPAEFFDGDPERAVSDPENEHLLPSHVAC 448
Query: 678 AALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTIS 737
AA E+ LS D+ YFG ++ L+ L+ + D + + + G E P H +S
Sbjct: 449 AAAENWLSTA-DDAYFGETFPDVVSALEADDTLARR-NTDEGVR-WTHDGGES-PQHAMS 504
Query: 738 IRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQ 797
+R I +++D +S+E + + A + GAVY HQG TY V +L+L +A Q
Sbjct: 505 LRTITDREVQLMDSRSDESIATLGFDNALRDAHPGAVYHHQGQTYEVTDLDLDRDVARLQ 564
Query: 798 KADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGS 857
Y+T+ D H++ + + +S + + T+ GF R
Sbjct: 565 PTWADYYTRI--LHDKHITVERDISSKPLSA--RSDVEVRFAEVTMRKQITGFERRDPKR 620
Query: 858 GIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVE---------QNFSFRSGLHAASHALL 908
G L LP+ ++A+++ VP V++ + +++F G+HAA H ++
Sbjct: 621 GTTIGHQLLDLPETRLRTKALYVTVPDDVESEMRALGEAHEKGSDYAFNGGIHAAEHGMI 680
Query: 909 HVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDM 958
+ P+ + C+ D+ P+ I +YD H GG G+++ D+
Sbjct: 681 SLFPLTLLCDRGDIGG-LSTPYHDHTGQSTIFIYDGHSGGVGLTRAGYDI 729
>gi|120406347|ref|YP_956176.1| DEAD/DEAH box helicase [Mycobacterium vanbaalenii PYR-1]
gi|119959165|gb|ABM16170.1| DEAD/DEAH box helicase domain protein [Mycobacterium vanbaalenii
PYR-1]
Length = 782
Score = 366 bits (939), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 254/743 (34%), Positives = 380/743 (51%), Gaps = 61/743 (8%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
HV D+ R+A P + A G+ L+SHQ + + G++VV++T T+S
Sbjct: 29 HVADLPPRRARAQAWPHWADPDVVRAFHDRGVEALWSHQLAAAELARDGRHVVLSTGTAS 88
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGV--YDGD 339
GKSL Y LP+L AL + S ALY+ PTKAL DQLRA A+T A D+ YDGD
Sbjct: 89 GKSLAYQLPILTALKENPRSRALYLSPTKALGHDQLRAAAALTAAVPGLADVAPTPYDGD 148
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
+ + R + R+ +R + +NPDM+H+S+L H +++ L +L+
Sbjct: 149 SPTEVRRFARERSRWIFSNPDMIHLSMLRNHARWAVFLRHLQ------------------ 190
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSH--VYGSD---PSFVFSTATSANPREHCM 454
++VIDE H Y+G FG + A++LRRL RLC+ G+D P+ +F++AT+A P
Sbjct: 191 -YLVIDECHYYRGIFGSNVAMVLRRLLRLCARYSATGADFSGPTVIFASATTAQPAATAS 249
Query: 455 ELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEV 514
EL + E+ + DGSP + LW P + + ++ + N A S +E
Sbjct: 250 ELIGQTVAEVTE-DGSPQGARTVALWEP-ALIADLVGE---------NGAPVRRSAGAEA 298
Query: 515 SYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRR 574
S + A+++ G R + F RSR+ EL R L +TAP L + YRAGY+AEDRR
Sbjct: 299 SRVMADLIAEGARTLTFVRSRRGAELAALGARARLADTAPELAQQVASYRAGYLAEDRRA 358
Query: 575 IERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAV 634
+ER G+L GVA TNALELG+D+ +D + GFPG++AS WQQAGR+GRR + +L V
Sbjct: 359 LERALAEGELRGVATTNALELGMDIAGLDAVVLAGFPGTVASFWQQAGRAGRRGQGALIV 418
Query: 635 YVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFG 694
+A + PLD Y + +P L PIE ID N VL L+CAA E PL+ D +
Sbjct: 419 LIARDDPLDTYLVHHPAALLDKPIERVVIDPANPYVLGPQLLCAATELPLT---DAEVRM 475
Query: 695 SGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN 754
G +L + G L PS F G + P+ + IR + +++ +
Sbjct: 476 WGAEPVAESLVDDGLLRRRPS-----GFFPAPGLDPHPA--VDIRGSTGGQIAILEAGTG 528
Query: 755 EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIH 814
+L +A V+ GAVY+HQG +Y+V L+ +A D Y T R+ TDI+
Sbjct: 529 RMLGSAGAGQAPASVHPGAVYLHQGESYVVDSLDFEDAVAFVHAEDPGYTTFARELTDIN 588
Query: 815 VSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYE 874
V+G + T + +V+ T G+ R R G + D VEL +P S E
Sbjct: 589 VTGAGE-------RAGYGPVTVGLVPVSVSNTVTGYLRR-RMDGEVIDFVELDMPTRSLE 640
Query: 875 SQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLA--PECPNPHD 931
+ AV + P++++ LHAA HA + ++P+ C+ D+ P D
Sbjct: 641 TMAVMCTITPEALQDNGIDPLRLPGSLHAAEHAAIGLLPLMASCDRGDIGGVSTAVGPVD 700
Query: 932 SRYFPERILLYDRHPGGTGVSKQ 954
P I +YD +PGG G + +
Sbjct: 701 G--LPT-IFVYDGYPGGAGFAAR 720
>gi|255728917|ref|XP_002549384.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240133700|gb|EER33256.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 1127
Score = 365 bits (938), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 264/816 (32%), Positives = 418/816 (51%), Gaps = 102/816 (12%)
Query: 205 EMVEHLRKGIG-----SQGQMVHVEDISARKAVLVEIPDALLDNTKSAL-KSTGIS---K 255
EM+ L+K S Q+++ E + ++++L +I + + K AL ++ GIS
Sbjct: 239 EMISALKKSKFYNNQISSVQLLNKERPAEKQSLLPQIQEFIHPELKEALLQTKGISIDND 298
Query: 256 LYSHQAESIMASLAGKN---VVVATMTSSGKSLCYNLPVLEALSHDLS-------SSALY 305
LYSHQA ++ L N V+ +T T+SGKSL Y +PVL ++ D+S ++A +
Sbjct: 299 LYSHQAVALNTLLDPTNNSHVIASTSTASGKSLIYQIPVLNSILWDISNGFHGRSTTAFF 358
Query: 306 MFPTKALAQDQLRA----LLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDM 361
+FPTKALAQDQ+R + + A I + YDGDT ++R+ + + ++ TNPD
Sbjct: 359 IFPTKALAQDQIRHFKDFISQLPSAQSRPIVVNTYDGDTPFQERVKISKESDIIFTNPDT 418
Query: 362 LHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALI 421
+H SILP H N R SL +FVV+DE H YKG FG + +
Sbjct: 419 IHASILPGHS-----FDNWREFLRSL------------KFVVMDELHVYKGTFGINVGFV 461
Query: 422 LRRLCRL---CSHVYGSDPSFVFSTATSANPREH---CMELANLSTLELIQNDGSPCAQK 475
+ RL R+ S G F+ +AT NP H L + + + DGSPC +K
Sbjct: 462 MARLARIKNKLSQDDGDQIRFISCSATIQNPISHFRVVCALRDSDEIVHVNQDGSPCCEK 521
Query: 476 LFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEM--VQHGLRCIAFCR 533
V+WNP + + K ++T + S ISE + L + + LR I FC
Sbjct: 522 KLVVWNPPALMNQRGQK-----ENTPDKLVPRVSMISESARLLLNILTINDNLRVIVFCP 576
Query: 534 SRKLCELVLSYTREILEET-APHLVDS--ICVYRAGYVAEDRRRIERDFFGGKLCGVAAT 590
R +CE ++ R +L++ + +D I YR GY DRR IE+ F G+L + AT
Sbjct: 577 IRVICETLMKEVRHLLQDVFSKSGIDQSDIMAYRGGYSKNDRRVIEKKMFDGQLRAIVAT 636
Query: 591 NALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRE--RPSLAVYVAFEGPLDQYFMK 648
NALELGID+ H+DV + GFP S ++L QQ GR+GRR + SLAV+V + P+DQY+++
Sbjct: 637 NALELGIDLSHLDVVITCGFPMSKSNLHQQFGRAGRRRNAKGSLAVFVPGKSPVDQYYLE 696
Query: 649 YPEKLFKSPIECCHIDAQNHK-----VLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITT 703
P +L + E ++ +LE+HL CAA E +SL + +G + +
Sbjct: 697 NPHELIGNNYEDLCVEGLREMECGRLILEKHLQCAAYEEGISLEDMHWFMPTGSKNDFSK 756
Query: 704 LKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNE--VLEEIE 761
+ N + LD K + P + ++IRAIE + V+D+ +N V+EEIE
Sbjct: 757 ILNENLI-----LDVDGKYKTNPRYTTKPHNQVAIRAIEEPAFAVVDITNNRNIVIEEIE 811
Query: 762 ESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNA 821
S+ F +YEG +++HQG YL+KE N + A ++ ++ + T RDYTD+ +
Sbjct: 812 LSRTTFTLYEGGIFLHQGQPYLIKEFNQEDRYAKVERVNVDWTTSQRDYTDV------DP 865
Query: 822 YATKISKDQLTKTTAQAL-------ACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYE 874
+ K QAL +T FGF+++ R I+ + VE+ P
Sbjct: 866 EEVECVKPLFPPKAQQALDIPAFSGRIKITMKVFGFFKVNRREEIL-EVVEVKNPPVIIY 924
Query: 875 SQAVWIQVP-QSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRC------NFSD--LAPE 925
S+ W+ +P ++++ + E+ S G+HAA+HA+++++PI++ N +D L+ E
Sbjct: 925 SKGFWLNIPSEALEVIHEKQLSTAGGIHAAAHAIMNMLPIHINGAPENGRNIADMELSTE 984
Query: 926 CPNP-------HDSRYFPERILLYDRHPG--GTGVS 952
C +P +SR P R++ YD G GTG+S
Sbjct: 985 CKSPLKEFSARENSRKRPARLVFYDTKGGQSGTGIS 1020
>gi|183985109|ref|YP_001853400.1| DEAD/DEAH box helicase [Mycobacterium marinum M]
gi|183178435|gb|ACC43545.1| DEAD/DEAH box helicase [Mycobacterium marinum M]
Length = 771
Score = 365 bits (938), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 240/740 (32%), Positives = 373/740 (50%), Gaps = 62/740 (8%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
HV ++ R P + GI+ +SHQ+ + + G++VVV+T T+S
Sbjct: 25 HVAELPPRAGQPSAWPQWAEPDVVRTFTQRGITAPWSHQSTAAELAHDGRHVVVSTGTAS 84
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIG--VYDGD 339
GKSL Y LPVL AL+ D + LY+ PTKAL DQLR A+ + D+ YDGD
Sbjct: 85 GKSLAYQLPVLAALAADPRARVLYLSPTKALGHDQLRTAQALVANVERLRDVAPTAYDGD 144
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
++ + R + R+ +R L +NPDM+H+SIL H +++ +L NLR
Sbjct: 145 SSDEVRRFARERSRWLFSNPDMIHLSILRNHARWAVLLRNLR------------------ 186
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
++++DE H Y+G FG + A++LRRL RLC+ Y + P+ +F++AT+ +P EL
Sbjct: 187 -YLIVDECHYYRGVFGSNVAMVLRRLLRLCAR-YSAHPTVIFASATTDSPGATAAELIGQ 244
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
E + DGSP + LW P LR+ L N A S +E + + A
Sbjct: 245 PVAE-VTEDGSPQGARTVALWEP--ALRTDLTGE--------NGAPVRRSAGTEAARVMA 293
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDF 579
+++ G + + F RSR+ EL + L++ AP L ++ YRAGY+ EDR +E
Sbjct: 294 DLIVEGAQTLTFVRSRRAAELTALGAQARLQDIAPQLSHTVASYRAGYLPEDRNCLEHAL 353
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFE 639
G+L G+A TNALELG+D+ +D + GFPG++AS WQQAGRSGRR + +L V +A +
Sbjct: 354 TEGRLRGLATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARD 413
Query: 640 GPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSS 699
PLD Y + +P L P+E ID N +L L+CAA E PL + + +
Sbjct: 414 DPLDTYLVHHPAALLDKPVERVVIDPGNPYLLGPQLLCAATELPLDAVEVHELRAVEV-- 471
Query: 700 GITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEE 759
+ L + G L K F G + P + IR + +++ + +L
Sbjct: 472 -VEALVDDGLLRR-----RGDKYFPAPGVQ--PHAAVDIRGSIGGQVVIVEADTGRLLGN 523
Query: 760 IEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGN 819
+ +A V+ GAVY+HQG +Y+V L+ +A AD Y T R+ TDI V+G
Sbjct: 524 VGADQAPASVHPGAVYLHQGESYVVDSLDTEEGLAFVHAADPGYATFARELTDIAVTGSG 583
Query: 820 NAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVW 879
+ + T + TVT G+ R R SG + D VEL +P++ + AV
Sbjct: 584 E-------RLEFGPVTVGLVPVTVTHQVVGYLRR-RLSGEVIDFVELDMPEHVLPTTAVM 635
Query: 880 --IQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPE 937
I + ++ V+ + LHAA HA + ++P+ C+ D+ + PE
Sbjct: 636 YTITAEELLRNGVDA-VAIPGSLHAAEHAAIGLLPLVASCDRGDI-----GGISTAIGPE 689
Query: 938 ---RILLYDRHPGGTGVSKQ 954
+ +YD +PGG G +++
Sbjct: 690 GLPSVFVYDGYPGGAGFAER 709
>gi|441517345|ref|ZP_20999082.1| putative ATP-dependent helicase [Gordonia hirsuta DSM 44140 = NBRC
16056]
gi|441455817|dbj|GAC57043.1| putative ATP-dependent helicase [Gordonia hirsuta DSM 44140 = NBRC
16056]
Length = 774
Score = 365 bits (938), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 247/751 (32%), Positives = 382/751 (50%), Gaps = 65/751 (8%)
Query: 216 SQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVV 275
++ + H+ I + A PD + + AL GI++ + HQ ++ ++AG++V +
Sbjct: 22 TESPLTHLAVIPTQTARFGRWPDWVDPRVREALNDHGINEPWQHQVQAADHAVAGRHVSI 81
Query: 276 ATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRA---LLAMTKAFDASID 332
T T+SGKSL Y LP+L D +++ALY+ PTKAL DQLRA L+ K F + +
Sbjct: 82 CTGTASGKSLAYQLPILTTFLEDPNATALYLSPTKALGTDQLRAVSRLITGRKDF-SHLQ 140
Query: 333 IGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEV 392
+YDGDT Q+ R W R ++R + TNPDM+H+ I P H ++ + L+ LR
Sbjct: 141 PCMYDGDTEQELRQWARLHSRWIFTNPDMVHIGINPAHARWRQFLARLR----------- 189
Query: 393 YLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREH 452
++V+DE H Y+G FG HTAL+L+RL RL YG+DP + ++AT ANP +
Sbjct: 190 --------YIVVDECHHYRGVFGSHTALVLQRLLRLAR-RYGADPVVIGASATVANPEQA 240
Query: 453 CMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDT-RNAANKTSSPI 511
L + + + D SP ++ LW P ++ S D R A
Sbjct: 241 LSRLIGEPAVAVTE-DASPHGERTVALWEP-----GFVDNSHGDQGTPLRRPAG------ 288
Query: 512 SEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAED 571
+E + L A+ V G R + F RSR+ E+ +++L + AP LVD + YRAGY+A+D
Sbjct: 289 AEAARLLADFVIEGARTLCFVRSRRGTEVTALRAQQLLADAAPALVDRVAAYRAGYLADD 348
Query: 572 RRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPS 631
RRR+E+ G L GVA TNALELGID+ +D + G+PG++AS WQQAGR+GRR S
Sbjct: 349 RRRLEKALADGDLLGVATTNALELGIDISGLDAVIVAGYPGTVASFWQQAGRAGRRGAGS 408
Query: 632 LAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLS----LI 687
L V VA + PLD Y + +P L P+E D N +L HL+CAA E PL+
Sbjct: 409 LVVLVARDDPLDTYLVHHPAALLDRPVEATVTDPANPYILGPHLLCAATEAPLTGAEVTA 468
Query: 688 YDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYE 747
+D L++ + + P LD P I IR +
Sbjct: 469 WDATELVDQLTADGLLRRRKAAWYPAPGLD--------------PHADIDIRGGIGGQIL 514
Query: 748 VIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKT 807
++D ++ +L ++ +A V+ GAVY+HQG +++V EL+L +AL + + T
Sbjct: 515 IVDTTTSRLLGTVDGGRATRTVHPGAVYLHQGESFVVDELDLHDGLALTHPEEPDWTTSV 574
Query: 808 RDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELY 867
R+ +++ + + + + ALA T Y SG I D+V L
Sbjct: 575 REDSEVEI--------LRTVRSETFGPLTIALAEVRVTDQVVAYLRKALSGEILDSVPLD 626
Query: 868 LPKYSYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPEC 926
LP+ E++AV V P+++ + F LHAA HA + ++ + C+ D+
Sbjct: 627 LPEEVLETKAVMYTVEPEALVSAGVPVDKFPGALHAAEHAAIGMLGLVATCDRWDIGGLS 686
Query: 927 PNPHDSRYFPERILLYDRHPGGTGVSKQVTD 957
N H P + +YD +PGG G +++ D
Sbjct: 687 SNLHSGTGLPT-VFVYDGYPGGAGFAERGYD 716
>gi|308178267|ref|YP_003917673.1| ATP-dependent helicase [Arthrobacter arilaitensis Re117]
gi|307745730|emb|CBT76702.1| putative ATP-dependent helicase [Arthrobacter arilaitensis Re117]
Length = 776
Score = 365 bits (938), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 235/749 (31%), Positives = 373/749 (49%), Gaps = 69/749 (9%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+VH +A+ + P L + GI + + HQ ++ G + +V+T T
Sbjct: 20 VVHRRTRAAKDEITSPWPAWLNTELIGIFQGLGIQQPWLHQTQAADLIHEGHHTIVSTGT 79
Query: 280 SSGKSLCYNLPVLEAL---------SHDLSSSALYMFPTKALAQDQLRALLAMTKAFDAS 330
+SGKS+ Y +P L+ L D +S LY+ PTKALA DQL A+ A+
Sbjct: 80 ASGKSMAYLMPGLDLLYRAKDSGFNDADAGASILYICPTKALAADQLSAVQALEVP---G 136
Query: 331 IDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTT 390
+ YDGDT Q R W+R + + TNPDMLH ILP H +S+ LR
Sbjct: 137 VRAAAYDGDTDQATRAWVRQHGNFIFTNPDMLHRGILPNHPAWSKFFKRLR--------- 187
Query: 391 EVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPR 450
+VVIDEAH+Y+G FG H A ++RRL R+C+H Y S+P F+ ++ATS++P
Sbjct: 188 ----------YVVIDEAHSYRGVFGAHVANLIRRLRRICAH-YSSNPIFIGASATSSDPE 236
Query: 451 EHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTR--NAANKTS 508
E L + + + +D S + + LW P + D R N A
Sbjct: 237 ESFGRLIG-APAQAVTHDFSASGELVMALWEPP-------------LSDHRGENGAPIRR 282
Query: 509 SPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYV 568
+ I+E + + +++ +R I F +SR+ E + + TR+ LE+ AP L + YR+GY+
Sbjct: 283 TAIAESASILTDLMADHVRSIVFIKSRRGAETIATLTRKHLEKFAPELSVRLAAYRSGYL 342
Query: 569 AEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRE 628
+RR +ER G+L GV +T+ALELGID+ +D + G+PG+ AS +QQ GR+GR
Sbjct: 343 PTERREVERQLRSGELLGVTSTSALELGIDIAGLDAVVVAGWPGTRASFFQQIGRAGRSG 402
Query: 629 RPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIY 688
+ +LA++VA E PLD Y +PE +F+ +E D QN VL HL AA E PL
Sbjct: 403 QDALAIFVAAEDPLDTYLAHHPEAIFELGVEATVFDPQNKYVLSGHLCAAAQESPLRP-- 460
Query: 689 DE-KYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYE 747
DE + FG + +L RGYL P+ + H + + SIRA +
Sbjct: 461 DELELFGPQTEELLDSLVQRGYLRRRPA-------GWFWTHPQHAASMFSIRADGGGPVD 513
Query: 748 VIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKT 807
+ID ++ +L ++ + +Q + GA+Y+HQG +Y V+EL+ + + + + + Y+T
Sbjct: 514 IIDAETGALLGTMDSPQTHYQAHPGAIYVHQGASYHVEELDEQNHVVVVTRVNPDYYTTA 573
Query: 808 RDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELY 867
RD T + A ++ + + T TVTT F R S + L
Sbjct: 574 RDLTTV-------AIDSEERSSKHRELTIHFGEVTVTTQVVSFQRKSVASNEVLSEDPLD 626
Query: 868 LPKYSYESQAVWIQVPQS--VKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPE 925
L +++VW + + ++A ++ + F LHAA HA++ ++P+ + D+
Sbjct: 627 LEARDLNTKSVWFTMTEERLLRAGLQID-QFPGALHAAEHAMIGLLPLVATSDRWDIGGV 685
Query: 926 CPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
H P I +YD PGG G +++
Sbjct: 686 STALHMDTGHPT-IFVYDAQPGGAGFAER 713
>gi|269796596|ref|YP_003316051.1| helicase [Sanguibacter keddieii DSM 10542]
gi|269098781|gb|ACZ23217.1| helicase family protein with metal-binding cysteine cluster
[Sanguibacter keddieii DSM 10542]
Length = 891
Score = 365 bits (938), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 258/844 (30%), Positives = 392/844 (46%), Gaps = 126/844 (14%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E+++ L G GQ+ HVE I AR+ + P + S K+ G+ + + HQ E+
Sbjct: 6 ELLDVLLAGGRRSGQLTHVEHIPAREGTQADWPAWADPSLVSGYKALGVDRPWVHQVEAA 65
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSA---------------LYMFPT 309
A+ AGK+ VVAT T SGKSL + LP L ++ D + +A LY+ PT
Sbjct: 66 EAAWAGKHTVVATSTGSGKSLAFWLPALTSVRGDRAGAAFDPGRIESARDRGSVLYLSPT 125
Query: 310 KALAQDQLRA---LLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSI 366
KALA DQL + LL+ +KA D +D DGDT R W++D+A +++TNPD LH S+
Sbjct: 126 KALAADQLASVTRLLSASKARDVQVD--TCDGDTPFSARKWIQDHADVVLTNPDYLHFSM 183
Query: 367 LPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLC 426
LP H +++R L +LR +VV+DE HA++G FG H +L+LRRL
Sbjct: 184 LPNHARWARFLRSLR-------------------YVVVDEGHAFRGVFGAHVSLVLRRLQ 224
Query: 427 RLCSHVYGSD--------------------------PSFVFSTATSANPREHCMELANLS 460
RL ++ S P+FV ++AT+A+P L +
Sbjct: 225 RLAAYYAPSSATRGSGRTRTAVQHRSASGLLLPRVGPTFVVASATTADPAVSAGRLVGVD 284
Query: 461 TLELIQ--NDGSPCAQKLFVLWNP--------TSCLRSVLNKSQTD------MDDTRNAA 504
E++ D SP +K F LW P + RS ++ D +DD +
Sbjct: 285 PSEVVAVTEDASPAGRKTFALWEPPELPRYDAAAFTRSRAERADGDAAVAALVDDPWDVG 344
Query: 505 NKTS----------------------------SPISEVSYLFAEMVQHGLRCIAFCRSRK 536
S + + L A++ HG R +AF RSR+
Sbjct: 345 GAPGDLGLVDDLGLVDDADAVDAEGDQDRPRRSATAVAADLLADLTVHGARTLAFTRSRR 404
Query: 537 LCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELG 596
E V + T+E L P L ++ YR GY+ E+RR +E G++ +A TNALELG
Sbjct: 405 GAESVATTTQEHLRPVDPSLPGTVAAYRGGYLPEERRALEAAVRSGEIRALATTNALELG 464
Query: 597 IDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKS 656
+D+ +D L +G+PG+ SLWQQAGR+GR L +VA E PLD + + +P+ +F++
Sbjct: 465 VDISGLDAVLIIGWPGTRVSLWQQAGRAGRAGADGLVAFVAREDPLDTFLVHHPDAIFRT 524
Query: 657 PIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSL 716
PIE D N VL HL AA E P+ + G + + L RG L
Sbjct: 525 PIEATVFDPTNPYVLAGHLCAAAGELPVRTEDLPLFGGDAARTLLDQLTERGTLRR---- 580
Query: 717 DSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYM 776
S+ F + H+ T +IR V++ + +L ++ + A V+ GAVY+
Sbjct: 581 -RSSGWF-WTHHQNAAGFT-NIRGEGGTPVSVVESATGRLLGTVDAAAADGSVHTGAVYV 637
Query: 777 HQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNN--AYATKISKDQLTKT 834
HQG T++V++ NL +AL + D+ Y T +R T I V + + ++ S D
Sbjct: 638 HQGETFVVEDYNLVDSVALVGREDVGYGTWSRSITSIDVIEETDHVDWGSETSADGRPAV 697
Query: 835 TAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNF 894
V F R S + T L LP + + A W V + + +
Sbjct: 698 EWGFGTVEVHHQVESFQRRRVPSQEVLGTEPLDLPVRTLRTAAAWWTVSAELLEAAQVDA 757
Query: 895 SFRSG-LHAASHALLHVVPIYVRCNFSDLAPECPNPH-DSRYFPER--ILLYDRHPGGTG 950
G LHAA HA + ++P+ C+ DL H D+ ER + +YD PGG G
Sbjct: 758 DQAPGALHAAEHASIGLLPLLATCDRWDLGGVSTAMHVDT----ERATVFVYDAFPGGAG 813
Query: 951 VSKQ 954
+++
Sbjct: 814 FAER 817
>gi|317486188|ref|ZP_07945025.1| DEAD/DEAH box helicase, partial [Bilophila wadsworthia 3_1_6]
gi|316922557|gb|EFV43806.1| DEAD/DEAH box helicase [Bilophila wadsworthia 3_1_6]
Length = 1021
Score = 365 bits (938), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 247/767 (32%), Positives = 375/767 (48%), Gaps = 80/767 (10%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATM 278
Q+ H + AR+A E L+ GI+ LYSHQA + AG++VVVAT
Sbjct: 25 QVTHHRVLPAREARYGETRRPWPRAIAEVLRERGIASLYSHQALTADTVRAGRDVVVATP 84
Query: 279 TSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFD--ASIDIGVY 336
T+SGK+LCY+LP+LE D S AL +FP KALAQDQL A +T + A I +Y
Sbjct: 85 TASGKTLCYSLPILEKCLQDPDSRALMLFPLKALAQDQLAAFGELTGHWPEAARPSIAIY 144
Query: 337 DGDTTQKDRMWLRDNA-RLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLI 395
DGDTT R +R N +LITNP+MLH++ILP+H Q++ L++L L
Sbjct: 145 DGDTTDHFRRKIRKNPPNVLITNPEMLHLAILPFHEQWTTFLASLSL------------- 191
Query: 396 FLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCME 455
VV+DEAH Y+G G H + + RRL R+C+ Y + P+FVF TAT NP E
Sbjct: 192 ------VVVDEAHTYRGVLGSHISQLFRRLNRICAR-YAARPNFVFCTATVGNPEELA-- 242
Query: 456 LANLSTLELIQNDGSPCAQKLFVLW--------NPTSCLRSV-LNKSQ--TDMDDTRNAA 504
NL EL+Q G P P + + LN Q D+ R +
Sbjct: 243 -GNLLGRELVQEKGLPSENAFPFSPLFSPSSSSEPVALGKETSLNAPQESADIPVIRESG 301
Query: 505 NKTS-----------SPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETA 553
T SP + L + GLR I +CRSR++ EL+ + + A
Sbjct: 302 APTGKRHMVFIDPEDSPSTTAIALLKAALARGLRTIVYCRSRRMTELIALWA----ADKA 357
Query: 554 PHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGS 613
I YRAG++ E+RR IE G+L V T+ALELGID+G +DV + +G+PG+
Sbjct: 358 GSFAGRISAYRAGFLPEERREIEARMSDGQLLAVVTTSALELGIDIGSLDVCILVGYPGT 417
Query: 614 IASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQ 673
+ S Q+ GR GR + S + VA E LDQYF+ PE F E I+ N ++++
Sbjct: 418 VISTMQRGGRVGRAGQESAVLLVAGEDALDQYFIHQPEAFFGREPERAVINPDNEVIVKR 477
Query: 674 HLVCAALEHPLSLIYDEKYF-GSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMP 732
HL CAA E PL D+ + G G + + L+ G L SA E++ K P
Sbjct: 478 HLECAAAELPLP--SDDPWLRGPGAQAALRELEREGLLL------KSADGREWVAARKRP 529
Query: 733 SHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSK 792
+ +R + ++D + + ++ +A+ + + GAVY+H+G TY+VK L+++ +
Sbjct: 530 QRHVDLRGCGAS-CTIVDAEGRPI-GSVDGHQAYKETHPGAVYLHRGKTYVVKSLDMAER 587
Query: 793 IALCQ--KADLKYFTKTRDYTD---IHVSGGNNAYATKISKDQLTKTTAQALACTVTTTW 847
+ C+ + + + T+ R + + I V +A+ ++ +L VT T
Sbjct: 588 VVRCEVPQQRVNWHTRVRSHKETAIIEVKASGSAFGAPVAFGRL----------RVTETI 637
Query: 848 FGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNF-SFRSGLHAASHA 906
G+ + + V L LP +E++ +W VP + E + F +HA HA
Sbjct: 638 TGYEQRSVADNRLICVVPLDLPPLVFETEGLWFCVPDGPRRSTEDSLMHFMGSIHALEHA 697
Query: 907 LLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSK 953
+ ++P+ V + +D H P + +YD PGG G+ +
Sbjct: 698 SIGLMPLMVMADRNDFGGISTPMHAQLGMPA-VFVYDGLPGGAGLCR 743
>gi|169827629|ref|YP_001697787.1| ATP-dependent helicase yprA [Lysinibacillus sphaericus C3-41]
gi|168992117|gb|ACA39657.1| Putative ATP-dependent helicase yprA [Lysinibacillus sphaericus
C3-41]
Length = 757
Score = 365 bits (937), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 239/746 (32%), Positives = 388/746 (52%), Gaps = 67/746 (8%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATM 278
+++H + + AR A P+ L + ALK+ GI +LY+HQ E+ + +G + T
Sbjct: 24 RILHWQTLEARPASYASFPENLHPSLVKALKARGIEQLYTHQREAFDLAQSGTSFTAVTP 83
Query: 279 TSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDG 338
T+SGKS CY+LPVL+ + D ++ A+Y+FPTKALAQDQ L + + I YDG
Sbjct: 84 TASGKSYCYHLPVLQKIIEDNNARAIYLFPTKALAQDQKNDLNELIEQSGEEILSYTYDG 143
Query: 339 DTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLF 398
DT R +R +++TNPDMLH ILP+H ++ + NL
Sbjct: 144 DTAPGIRQKVRKAGHIVMTNPDMLHSGILPHHTKWVSLFENL------------------ 185
Query: 399 IRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELAN 458
+++VIDE H YKG FG H A ++RRL R+C YGS+P F+ ++AT NP+E L N
Sbjct: 186 -QYIVIDELHTYKGVFGSHVAHVIRRLKRICE-FYGSNPVFICTSATIKNPKELAELLTN 243
Query: 459 LSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLF 518
S LI + G+P +K F+ +NP +++K+ S + EVS L
Sbjct: 244 ESH-ALIADSGAPVGKKTFLFYNP-----PIIHKT----------FGVRRSAVLEVSDLA 287
Query: 519 AEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVD-SICVYRAGYVAEDRRRIER 577
+ G++ I F +SR E++++Y +E+ T L+D S+ YR GY+ +RR IE+
Sbjct: 288 KRLYIAGIQSIIFAKSRVRVEMIVTYLKEL---TRNKLLDESVRGYRGGYLPSERRVIEK 344
Query: 578 DFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVA 637
G + V +TNALELG+D+G + + G+PG+IAS WQQAGR+GRR+ +L +YVA
Sbjct: 345 GLRDGTIQTVVSTNALELGVDIGQLQACIMTGYPGNIASAWQQAGRAGRRQDEALIIYVA 404
Query: 638 FEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGL 697
LDQY + +P L S E I +N +L HL CAA E P S+ E +G
Sbjct: 405 QSTALDQYVVNHPLFLLGSAPEEARIYPENMLILMDHLKCAAFELPFSI---EDTYG--- 458
Query: 698 SSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQ---SN 754
I L + YL+ + + ++ + ++ ++ P+H IS+R+ E +I++
Sbjct: 459 EYDIQELLD--YLAEEGVVFKTSDKWHWMS-DRFPAHDISLRSASQENVVIINLSIPAQT 515
Query: 755 EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIH 814
+V+ E++ A ++E A+Y+HQG + V++L+ K A ++ D+ Y+T ++
Sbjct: 516 KVIGEMDRHSAMTLLHEEAIYLHQGIQFQVEQLDWEEKKAYVREVDVDYYTDANLAVEMK 575
Query: 815 VSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYE 874
V + + A A FG + GSG I +LP
Sbjct: 576 VLEEDRSRGYNGGTISFGDVGLVAQATIFKKIRFGTHDN-IGSGPI------HLPPDEMH 628
Query: 875 SQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLA--PECPNPHDS 932
+ A W+ + + + + G+ A +A +P++++C+ SD+A P+ H+
Sbjct: 629 TSASWLSLHLTEQWSEAELTEVMIGVAYAMNAF---IPLFIQCDSSDVAVVPQVKASHNE 685
Query: 933 RYFPERILLYDRHPGGTGVSKQVTDM 958
P +YD++PGG G+S++V D+
Sbjct: 686 --LP-TFFVYDKYPGGIGLSEKVYDL 708
>gi|126651177|ref|ZP_01723387.1| YprA [Bacillus sp. B14905]
gi|126592015|gb|EAZ86081.1| YprA [Bacillus sp. B14905]
Length = 756
Score = 365 bits (937), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 238/748 (31%), Positives = 386/748 (51%), Gaps = 71/748 (9%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATM 278
+++H + + R A P+ L + AL++ GI +LY+HQ E+ + +G + T
Sbjct: 24 RILHWQTLEGRPASYAPFPENLHPSLVKALQARGIEQLYTHQREAFDLAQSGTSFTAVTP 83
Query: 279 TSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDG 338
T+SGKS CY+LPVL+ + D ++ A+Y+FPTKALAQDQ L + + I YDG
Sbjct: 84 TASGKSYCYHLPVLQKIVEDKNARAIYLFPTKALAQDQKNDLNELIEQSGEEILSYTYDG 143
Query: 339 DTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLF 398
DT R +R +++TNPDMLH ILP+H ++ + NL
Sbjct: 144 DTAPGIRQKVRKAGHIVMTNPDMLHSGILPHHTKWVSLFENL------------------ 185
Query: 399 IRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELAN 458
+++VIDE H YKG FG H A ++RRL R+C YGS P F+ ++AT NP+E L N
Sbjct: 186 -QYIVIDELHTYKGVFGSHVAHVIRRLKRICE-FYGSKPVFICTSATIKNPKELAELLTN 243
Query: 459 LSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLF 518
S LI + G+P +K F+ +NP +++K+ S + EVS L
Sbjct: 244 ESH-ALIADSGAPIGKKTFLFYNP-----PIIHKT----------FGVRRSAVLEVSDLA 287
Query: 519 AEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVD-SICVYRAGYVAEDRRRIER 577
+ G++ I F +SR E++++Y +E+ T L+D S+ YR GY+ +RR IE+
Sbjct: 288 KRLYIAGIQSIIFAKSRVRVEMIVTYLKEL---TRNKLLDESVRGYRGGYLPSERRVIEK 344
Query: 578 DFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVA 637
G + V +TNALELG+D+G + + G+PG+IAS WQQAGR+GRR+ +L +YVA
Sbjct: 345 GLRDGTIQTVVSTNALELGVDIGQLQACIMTGYPGNIASAWQQAGRAGRRQDEALIIYVA 404
Query: 638 FEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGL 697
LDQY + +P L S E I +N +L HL CAA E P S+ E +G
Sbjct: 405 QSTALDQYVVNHPLFLLGSAPEEARIYPENMLILMDHLKCAAFELPFSI---EDTYG--- 458
Query: 698 SSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQ---SN 754
I L + YL+ + + ++ + ++ ++ P+H IS+R+ E +ID+
Sbjct: 459 EYDIQELLD--YLAEEGVVFKTSDKWHWMS-DRFPAHDISLRSASQENVVIIDLSIPAQT 515
Query: 755 EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIH 814
+V+ E++ A ++E A+Y+HQG + V++L+ K A ++ D+ Y+T ++
Sbjct: 516 KVIGEMDRHSAMTLLHEEAIYLHQGIQFQVEKLDWEEKKAYVREVDIDYYTDANLAVEMK 575
Query: 815 VSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYE 874
V + + A A FG + GSG I +LP
Sbjct: 576 VLEEDRSRTYNGGSISFGDVGLVAQATIFKKIRFGTHDN-IGSGPI------HLPPDEMH 628
Query: 875 SQAVWIQVPQSVKAVVEQ--NFSFRSGLHAASHALLHVVPIYVRCNFSDLA--PECPNPH 930
+ A W+ + + EQ + ++A+ +P++++C+ SD+A P+ H
Sbjct: 629 TSASWLSL-----HLTEQWSEAELTEAMIGVAYAMNAFIPLFIQCDSSDVAVVPQVKASH 683
Query: 931 DSRYFPERILLYDRHPGGTGVSKQVTDM 958
+ P +YD++PGG G+S++V D+
Sbjct: 684 NE--LP-TFFVYDKYPGGIGLSEKVYDL 708
>gi|15610785|ref|NP_218166.1| Probable helicase [Mycobacterium tuberculosis H37Rv]
gi|148663512|ref|YP_001285035.1| DeaD/DeaH box family ATP-dependent RNA helicase [Mycobacterium
tuberculosis H37Ra]
gi|148824851|ref|YP_001289605.1| helicase [Mycobacterium tuberculosis F11]
gi|253800689|ref|YP_003033690.1| helicase [Mycobacterium tuberculosis KZN 1435]
gi|254233145|ref|ZP_04926471.1| hypothetical protein TBCG_03571 [Mycobacterium tuberculosis C]
gi|254366199|ref|ZP_04982243.1| hypothetical helicase [Mycobacterium tuberculosis str. Haarlem]
gi|254552761|ref|ZP_05143208.1| helicase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
gi|297636324|ref|ZP_06954104.1| helicase [Mycobacterium tuberculosis KZN 4207]
gi|297733317|ref|ZP_06962435.1| helicase [Mycobacterium tuberculosis KZN R506]
gi|306778002|ref|ZP_07416339.1| helicase [Mycobacterium tuberculosis SUMu001]
gi|306778535|ref|ZP_07416872.1| helicase [Mycobacterium tuberculosis SUMu002]
gi|306786556|ref|ZP_07424878.1| helicase [Mycobacterium tuberculosis SUMu003]
gi|306790922|ref|ZP_07429244.1| helicase [Mycobacterium tuberculosis SUMu004]
gi|306791242|ref|ZP_07429544.1| helicase [Mycobacterium tuberculosis SUMu005]
gi|306796029|ref|ZP_07434331.1| helicase [Mycobacterium tuberculosis SUMu006]
gi|306801276|ref|ZP_07437944.1| helicase [Mycobacterium tuberculosis SUMu008]
gi|306805490|ref|ZP_07442158.1| helicase [Mycobacterium tuberculosis SUMu007]
gi|306969781|ref|ZP_07482442.1| helicase [Mycobacterium tuberculosis SUMu009]
gi|306974120|ref|ZP_07486781.1| helicase [Mycobacterium tuberculosis SUMu010]
gi|307081828|ref|ZP_07490998.1| helicase [Mycobacterium tuberculosis SUMu011]
gi|307086442|ref|ZP_07495555.1| helicase [Mycobacterium tuberculosis SUMu012]
gi|313660649|ref|ZP_07817529.1| helicase [Mycobacterium tuberculosis KZN V2475]
gi|375297914|ref|YP_005102181.1| helicase [Mycobacterium tuberculosis KZN 4207]
gi|383309372|ref|YP_005362183.1| helicase [Mycobacterium tuberculosis RGTB327]
gi|386000437|ref|YP_005918736.1| helicase [Mycobacterium tuberculosis CTRI-2]
gi|392388240|ref|YP_005309869.1| unnamed protein product [Mycobacterium tuberculosis UT205]
gi|392434126|ref|YP_006475170.1| helicase [Mycobacterium tuberculosis KZN 605]
gi|397675601|ref|YP_006517136.1| helicase [Mycobacterium tuberculosis H37Rv]
gi|422814897|ref|ZP_16863115.1| helicase [Mycobacterium tuberculosis CDC1551A]
gi|124602938|gb|EAY61213.1| hypothetical protein TBCG_03571 [Mycobacterium tuberculosis C]
gi|134151711|gb|EBA43756.1| hypothetical helicase [Mycobacterium tuberculosis str. Haarlem]
gi|148507664|gb|ABQ75473.1| DeaD/DeaH box family ATP-dependent RNA helicase [Mycobacterium
tuberculosis H37Ra]
gi|148723378|gb|ABR08003.1| hypothetical helicase [Mycobacterium tuberculosis F11]
gi|253322192|gb|ACT26795.1| helicase [Mycobacterium tuberculosis KZN 1435]
gi|308213713|gb|EFO73112.1| helicase [Mycobacterium tuberculosis SUMu001]
gi|308328443|gb|EFP17294.1| helicase [Mycobacterium tuberculosis SUMu002]
gi|308328878|gb|EFP17729.1| helicase [Mycobacterium tuberculosis SUMu003]
gi|308332718|gb|EFP21569.1| helicase [Mycobacterium tuberculosis SUMu004]
gi|308340211|gb|EFP29062.1| helicase [Mycobacterium tuberculosis SUMu005]
gi|308343497|gb|EFP32348.1| helicase [Mycobacterium tuberculosis SUMu006]
gi|308347997|gb|EFP36848.1| helicase [Mycobacterium tuberculosis SUMu007]
gi|308351939|gb|EFP40790.1| helicase [Mycobacterium tuberculosis SUMu008]
gi|308352699|gb|EFP41550.1| helicase [Mycobacterium tuberculosis SUMu009]
gi|308356573|gb|EFP45424.1| helicase [Mycobacterium tuberculosis SUMu010]
gi|308360531|gb|EFP49382.1| helicase [Mycobacterium tuberculosis SUMu011]
gi|308364143|gb|EFP52994.1| helicase [Mycobacterium tuberculosis SUMu012]
gi|323717698|gb|EGB26899.1| helicase [Mycobacterium tuberculosis CDC1551A]
gi|328460419|gb|AEB05842.1| helicase [Mycobacterium tuberculosis KZN 4207]
gi|344221484|gb|AEN02115.1| helicase [Mycobacterium tuberculosis CTRI-2]
gi|378546791|emb|CCE39070.1| unnamed protein product [Mycobacterium tuberculosis UT205]
gi|379030033|dbj|BAL67766.1| helicase [Mycobacterium tuberculosis str. Erdman = ATCC 35801]
gi|380723325|gb|AFE18434.1| helicase [Mycobacterium tuberculosis RGTB327]
gi|392055535|gb|AFM51093.1| helicase [Mycobacterium tuberculosis KZN 605]
gi|395140506|gb|AFN51665.1| helicase [Mycobacterium tuberculosis H37Rv]
gi|440583157|emb|CCG13560.1| putative HELICASE [Mycobacterium tuberculosis 7199-99]
gi|444897206|emb|CCP46472.1| Probable helicase [Mycobacterium tuberculosis H37Rv]
Length = 771
Score = 365 bits (937), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 244/740 (32%), Positives = 376/740 (50%), Gaps = 62/740 (8%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
HV ++ + P+ + A GIS +SHQAE+ + AG++VV+ T +S
Sbjct: 25 HVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPWSHQAEAAELAYAGRHVVIGTGPAS 84
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIG--VYDGD 339
GKSL Y L VL AL+ D + ALY+ PTKAL DQLRA A+ A D+ YDGD
Sbjct: 85 GKSLAYQLLVLNALATDSRARALYLSPTKALGHDQLRAAHALAAAVPRLADVAPTAYDGD 144
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
+ + R + R+ +R L +NP+M H+S+L H +++ +L NLR
Sbjct: 145 SPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAVLLRNLR------------------ 186
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
FV++DE H Y+G FG + A++LRRL RLC+ Y + P+ +F++AT+A+P +L
Sbjct: 187 -FVIVDECHYYRGVFGSNVAMVLRRLLRLCAR-YSAHPTVIFASATTASPGATAADLIGQ 244
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
+E + DGSP + LW P LRS D+ A + S+ +E + + A
Sbjct: 245 PVVE-VTEDGSPRGARTVALWEP--ALRS-------DVIGEHGAPVRRSA-GAEAARVMA 293
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDF 579
+++ G + + F RSR+ EL R L + AP L D++ YRAGY+AEDR + +
Sbjct: 294 DLIVEGAQTLTFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQAL 353
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFE 639
G+L G+A TNALELG+D+ +D + GFPG++AS WQQAGRSGRR + +L V +A +
Sbjct: 354 AEGQLRGLATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARD 413
Query: 640 GPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSS 699
PLD Y + +P L P+E ID N +L L+CAA E PL D + G
Sbjct: 414 DPLDTYLVHHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLD---DAEVRSWGAVE 470
Query: 700 GITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEE 759
+L + G L + + F G + P + +R + +++ + +L
Sbjct: 471 VAESLVDDGLLRR-----RNGRYFPAPGVK--PHAAVDVRGAIGGQIVIVEAGTGRLLGS 523
Query: 760 IEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGN 819
+ +A + GAVY+HQG TY+V L+ IA D Y T R+ TDI V+G
Sbjct: 524 VGVGQAPAAAHPGAVYLHQGETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTG 583
Query: 820 NAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVW 879
+ + TVT G+ R + SG + D VEL +P+++ + AV
Sbjct: 584 E-------RLVFGPVALGLVPVTVTNHVVGYLRR-QLSGEVLDFVELDMPEHTLPTTAVM 635
Query: 880 IQVPQS--VKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPE 937
+ V++ +E LHAA HA + ++P+ C+ D+ + PE
Sbjct: 636 YTITSDALVRSGIEAT-RIPGSLHAAEHAAIGLLPLVASCDRGDI-----GGMSTATGPE 689
Query: 938 ---RILLYDRHPGGTGVSKQ 954
+ +YD +PGG G +++
Sbjct: 690 GLPSVFVYDGYPGGAGFAER 709
>gi|225022301|ref|ZP_03711493.1| hypothetical protein CORMATOL_02340 [Corynebacterium matruchotii
ATCC 33806]
gi|224944898|gb|EEG26107.1| hypothetical protein CORMATOL_02340 [Corynebacterium matruchotii
ATCC 33806]
Length = 797
Score = 365 bits (937), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 243/743 (32%), Positives = 362/743 (48%), Gaps = 90/743 (12%)
Query: 252 GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKA 311
GI++ Y HQ+ + + G++V++AT TSSGKSL Y LP L L+ D ++ ALY+ PTKA
Sbjct: 38 GITRPYQHQSLTATTAHDGRHVIIATGTSSGKSLGYQLPALTDLARDPAACALYLTPTKA 97
Query: 312 LAQDQLRALLAMTKAFDA--SIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPY 369
L DQL A+L + +A A SI+ YDGDT + R +R +R L+TNPDMLH IL Y
Sbjct: 98 LGNDQLTAILRLCRADPALASINPAPYDGDTPTEARRTIRATSRYLVTNPDMLHGGILAY 157
Query: 370 HGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALI-------- 421
+ R+L+NLR +V++DEAH Y+G FG H +L+
Sbjct: 158 PDLWRRLLANLR-------------------YVIVDEAHQYRGVFGAHVSLVLRRLLRLA 198
Query: 422 ---------LRRLCRLCSHVYGSD-------PSFVFSTATSANPREHCMELANLSTLELI 465
+R G P + ++ATS NP +H L + +
Sbjct: 199 RRAQQPRGNMREGRCGGGVGAGGHGGPKTGGPVVILASATSNNPAQHAARLIGDPDVVAV 258
Query: 466 QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAAN-----KTSSPISEVSYLFAE 520
DGSP ++ +L S + + DT A+ + S +E + L A+
Sbjct: 259 TEDGSPRGRRTIILTEAGPADSSGGDAGENLAADTGRQADIHPGDRRRSITTEAALLMAD 318
Query: 521 MVQHGLRCIAFCRSRKLCELV-LSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDF 579
+ G R + F +SR ELV L E+ P L + YRAGY+A DRRRIE
Sbjct: 319 FLVEGARTLVFTKSRAGAELVALRAQTELARVGRPDLGARVAAYRAGYLAADRRRIELAL 378
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFE 639
G+L GVAATNALELGID+G +D + GFPG++AS WQQAGR+GRR + + V +A
Sbjct: 379 DDGELLGVAATNALELGIDIGGLDAVITAGFPGTLASFWQQAGRAGRRNQAATVVLIASA 438
Query: 640 GPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSG--- 696
PLD Y + +P+ L P+E D N +L H++CAALE PL+ + +F +G
Sbjct: 439 DPLDAYLVHHPDALISRPVEAAVFDPTNPHILAGHVLCAALEAPLT-DREVAWFRAGPVV 497
Query: 697 ---LSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQS 753
++ G + RGY ++ P + P +S+R E +++ +
Sbjct: 498 DRLVADGWLRRRPRGYYAAVPP------------GQPDPHRVVSVRGSGRE-VTIVESAT 544
Query: 754 NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDI 813
V+ ++ +A QV+ GAVY+HQG +Y+V EL+L+ +AL + YFT+ T I
Sbjct: 545 GRVVGTVDAGQAASQVHPGAVYLHQGRSYVVDELSLAEGVALVHREVPDYFTQALSSTTI 604
Query: 814 HVSGGNNAYATKISK-----DQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYL 868
V +A +++ + L + T Q Y + G V L +
Sbjct: 605 QVVSAPDAACDEVAPGLRVANMLVEVTRQVTG----------YVVRDPGGATLAAVPLGM 654
Query: 869 PKYSYESQAVWIQVPQSVKAVVEQNFSFRSG-LHAASHALLHVVPIYVRCNFSDLAPECP 927
P S ++AV I + V A E G LHA HAL+ ++P+ C+ D+
Sbjct: 655 PPESLVTRAVAITIDPVVLA--ELGIQDVPGTLHAMEHALIGLLPLVATCDRWDIGGVST 712
Query: 928 NPHDSRYFPERILLYDRHPGGTG 950
H P + +YD +PGG G
Sbjct: 713 ALHQDTGLPT-VFVYDGYPGGAG 734
>gi|357415800|ref|YP_004928820.1| Distinct helicase family with a unique C-terminal domain including
a metal-binding cysteine cluster [Pseudoxanthomonas
spadix BD-a59]
gi|355333378|gb|AER54779.1| Distinct helicase family with a unique C-terminal domain including
a metal-binding cysteine cluster [Pseudoxanthomonas
spadix BD-a59]
Length = 850
Score = 365 bits (936), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 239/763 (31%), Positives = 379/763 (49%), Gaps = 95/763 (12%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
+ R+ IPD + AL++ GI +LY+HQA++ A+ G++V + T T+SGKSL
Sbjct: 48 LPGREGCYAPIPDEVPAALAEALRARGIQRLYAHQAQAWEATRRGEHVAIVTPTASGKSL 107
Query: 286 CYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDR 345
CY LPVL A + + ALY+FPTKALAQDQ+ LL + +A + + +DGDT R
Sbjct: 108 CYTLPVLSA-AMTRQAKALYLFPTKALAQDQVAELLELNRAGELGVKAFTFDGDTPGDAR 166
Query: 346 MWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVID 405
+R + ++++NPDMLH +ILP+H ++++ NL+ +VVID
Sbjct: 167 QAIRLHGDIVVSNPDMLHQAILPHHTKWAQFFENLQ-------------------YVVID 207
Query: 406 EAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELI 465
E H Y+G FG H +LRRL R+C+ YG+ P F+ +AT NP+ H L + I
Sbjct: 208 EIHTYRGVFGSHVTNVLRRLKRICA-FYGASPQFILCSATIGNPQAHAQALIE-ERVHAI 265
Query: 466 QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHG 525
G+P K +LWNP V+N D+ R +A S+ I+ ++ ++ G
Sbjct: 266 TESGAPTGDKHVLLWNP-----PVVN---ADLG-LRASARSQSNRIARIA------IKSG 310
Query: 526 LRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLC 585
L+ + F ++R + E++ Y ++I + P I YR GY+ +RR+ ER G++
Sbjct: 311 LKTLVFAQNRLMVEVLTKYLKDIFDHD-PRKPARIRAYRGGYLPTERRQAERAMREGRID 369
Query: 586 GVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQY 645
G+ +T+ALELG+D+G +DV + G+PGS+A+ WQ+ GR+GRR+RP L V VA PLDQY
Sbjct: 370 GIVSTSALELGVDIGSLDVVILNGYPGSVAATWQRFGRAGRRQRPCLGVLVASSQPLDQY 429
Query: 646 FMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSG-ITTL 704
+++P+ +P E +L H+ CAA E P F +G G I L
Sbjct: 430 VVRHPDFFADAPPEHARTAPDQPLILFDHIRCAAFELP---------FNAGEPFGPIDPL 480
Query: 705 KNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNE--VLEEIEE 762
G L+ + + +E+I + P++ +S+R++ + V+D + ++ E++
Sbjct: 481 VYLGALAESEVVHREGERWEWIA-DSYPANAVSLRSVADGNFVVVDRTDGKQTIIAEVDY 539
Query: 763 SKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAY 822
S A +YEGA++M Q Y V+ L+ + A + + Y+T + DYT + V
Sbjct: 540 SAAALTLYEGAIHMVQSTPYQVERLDWEGRKAYVSRTQVDYYTDSIDYTRLKV------- 592
Query: 823 ATKISKDQLTKTTAQALACTVTTTWFGF--YRLWRGSGIIFDTVELYLPKYSYESQAVWI 880
+ + A V G+ R + I + V LP + AVW
Sbjct: 593 LERFDGGPAGRGDAHHGEVHVVRRVSGYKKIRYYTHENIGYGPVN--LPDQELHTTAVWW 650
Query: 881 QVPQSVKAVVEQNFSFR----SGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRY-- 934
Q+PQ A + + F+ R G AASHAL V + V + DL N + +
Sbjct: 651 QLPQ---AALGKAFASRQDALDGFLAASHALHVVATVAVMADARDLQKAVGNGDGAWFAL 707
Query: 935 ------------------------FPERILLYDRHPGGTGVSK 953
F + LYD PGG G+S+
Sbjct: 708 ADQSGRGQLRGVEGAEGAASLEQAFVPTVYLYDNFPGGVGLSE 750
>gi|218780285|ref|YP_002431603.1| DEAD/DEAH box helicase [Desulfatibacillum alkenivorans AK-01]
gi|218761669|gb|ACL04135.1| DEAD/DEAH box helicase domain protein [Desulfatibacillum
alkenivorans AK-01]
Length = 1002
Score = 364 bits (935), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 230/717 (32%), Positives = 345/717 (48%), Gaps = 80/717 (11%)
Query: 248 LKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMF 307
LK + KL+ HQ ++I G+N+V AT T+SGK+ YNLPVLEAL+ D + ALYMF
Sbjct: 53 LKKADVKKLFKHQVQAIDLIRRGENIVAATPTASGKTFMYNLPVLEALAQDPGAHALYMF 112
Query: 308 PTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRD-NARLLITNPDMLHMSI 366
P KAL QDQ++ + + +YDGDTT R +++ + TNP+MLH+
Sbjct: 113 PLKALTQDQIKTFRKLAANMENGPTAEIYDGDTTSYRRRKIKEAPPNAIFTNPEMLHLGF 172
Query: 367 LPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLC 426
LPYH + L+ F+++DE H Y+G G H A + RL
Sbjct: 173 LPYHHNWEGFFGKLK-------------------FIIVDEVHTYRGVMGSHMAWVFARLL 213
Query: 427 RLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCL 486
R+C + YGSDP FV +AT ANPR+ L +L++ +P + V NP +
Sbjct: 214 RVCRY-YGSDPQFVMCSATIANPRDLACRLTG-RNFKLVEKSTAPRGARHVVFMNPQT-- 269
Query: 487 RSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTR 546
P L + GLR I + +SRK+ EL+ +
Sbjct: 270 ----------------------GPAQTAIMLLKAALARGLRTIVYTQSRKMTELISMWA- 306
Query: 547 EILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTL 606
E A D I YRAGY+ E+RR IE G+L V +T+ALELGID+G +D+ +
Sbjct: 307 ---SERAGEFKDKISAYRAGYLPEERREIETKLASGELLAVVSTSALELGIDIGALDLCI 363
Query: 607 HLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQ 666
+G+PG++ + WQ+ GR GR S V +A E LDQYFM+ PE F +E I+
Sbjct: 364 LVGYPGTVMATWQRGGRVGRDLSESAMVLIAGEDALDQYFMRNPEDFFSRSVENAVINPL 423
Query: 667 NHKVLEQHLVCAALEHPLSLIYDEKYFGSG-LSSGITTLKNRGYLSSDPSLDSSAKIFEY 725
N + +H+ CAA E PL+L D+ SG L I L+ G L D A+
Sbjct: 424 NPVISARHIECAAAELPLNL--DDPILQSGELDKTIYRLEQEGKLLRD------AQGSRL 475
Query: 726 IGHEKMPSHTISIRAIESE------RYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQG 779
+K P + +R S+ E + + + +I+ +AF + + GA+Y+H G
Sbjct: 476 YASKKKPQRDVDLRGSGSQFTIMVADPEDPEGPGGQSVGQIDLFRAFRETHPGAIYLHLG 535
Query: 780 HTYLVKELNLSSKIALCQKADLKYFTKTRDYTD---IHVSGGNNAYATKISKDQLTKTTA 836
TY V L+L+ + + A + Y+T+ R D + + + T++ +L K T
Sbjct: 536 RTYRVDALDLARRTVFARPAQVDYYTQARGDKDTEILEIFDEKTVWGTRVYCGRL-KVTD 594
Query: 837 QALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNF-S 895
Q VT R + GI L LP ++E+Q +W ++P + VE F
Sbjct: 595 Q-----VTGFESKKVRTRKSLGI----TPLDLPSNTFETQGLWFEIPGHTQKAVEDKFMH 645
Query: 896 FRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVS 952
F G+HA HA + + P+ V + +DL P + + +YD PGG G+S
Sbjct: 646 FMGGIHAIEHAAIGIAPLIVMADRNDLG-GISTPFHPQMGGPAVFIYDGVPGGVGLS 701
>gi|170094842|ref|XP_001878642.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647096|gb|EDR11341.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 1131
Score = 364 bits (935), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 242/768 (31%), Positives = 392/768 (51%), Gaps = 97/768 (12%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSAL-KSTGISKLYSHQAES 263
E+V L+ Q+V+ + A++A+ AL + +S I+ YSHQ +
Sbjct: 269 EVVAELQTQTWVDDQIVYTKAFDAKEALTDVFEPALSQMVSRGISESHNITSFYSHQVAA 328
Query: 264 IMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKA--LAQDQLRALL 321
I A G NVVV+T T+SGKS+ Y +P+L L + +A++++PTKA L L ++
Sbjct: 329 IRAIQRGMNVVVSTSTASGKSVIYQVPLLTFLEKNAGVTAVFVYPTKARHLFYKTLPTMV 388
Query: 322 AMT--KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSIL--PYHGQFSRIL 377
+ + + ++ YDGDT Q+DR +R++A +++TN S L P FSR
Sbjct: 389 MLNNNRHLHKTKEVSTYDGDTPQQDRAVIRESASVILTNFVSHTRSFLWWPPPTMFSR-- 446
Query: 378 SNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDP 437
T ++L L FV DE H Y G FG H A+I+RR R+C+ V
Sbjct: 447 -----------TPFMHLYCLERNFV--DELHYYSGVFGSHAAMIIRRFRRVCAAVGNRHI 493
Query: 438 SFVFSTATSANPREHCMELANL--STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQT 495
F+ +AT NP H ++ L ++LE+ DGSP +K ++WNP
Sbjct: 494 QFISCSATLPNPGAHMEKMFGLDSTSLEVFTEDGSPSGRKDVLIWNP------------- 540
Query: 496 DMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH 555
+ D + + S I++ + + +++ G+R I FC++ K + L+ E
Sbjct: 541 KLRDPKQPSLGRCSSIADAARVMRFLMKRGIRVILFCKAMKTIKADLT------NEGRLD 594
Query: 556 LVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIA 615
++D + YR GY EDRRRIE+D F G L G+ ATNALELGID+G +D + LGFP +I+
Sbjct: 595 ILDRVRPYRGGYSQEDRRRIEQDAFSGALLGIVATNALELGIDIGALDAVIMLGFPMTIS 654
Query: 616 SLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHL 675
+ QQ+GR+GRR R SL+V +A P+DQY++ +PE+LF S I+ I+ +N +LE HL
Sbjct: 655 NFRQQSGRAGRRSRDSLSVLIADSFPVDQYYVSHPEELFDSKIDDLIIETENKIILEAHL 714
Query: 676 VCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHT 735
CA E PLS DEK+FG + T ++ D + AK Y PS
Sbjct: 715 QCAGNEMPLSPA-DEKWFGPFMLQVCETQLSK---DKDGWYHTHAKFLPY------PSTH 764
Query: 736 ISIRAIESERYEVIDMQ-----SNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLS 790
+SIR + ++Y V+++Q + ++EE+E S+A F++YEG ++MHQG T+++ E+N
Sbjct: 765 VSIRGVTEDKYMVVEVQLGQPAKSSLIEEVEISRALFEIYEGGIFMHQGSTFIITEVNHD 824
Query: 791 SKIALCQKADLKYFTK---------------------TRDYTDIH---------VSGGNN 820
+K+ + D+ Y T RD+T++ ++
Sbjct: 825 AKLVKTIRRDVNYITSPRQDSTVSLNFVSLTVRRVITNRDFTNVDALQTRRIRAINANRV 884
Query: 821 AYATKISKD-QLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVW 879
Y +K S + + + L +V FGFY++ +G+I D+V+L ++ W
Sbjct: 885 YYGSKHSTSLAIRRCKSLELEISVYVKVFGFYKI--RNGVILDSVDLETLPLEQDTTGFW 942
Query: 880 IQVPQSVKAVVE-QNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPEC 926
I VP ++ +++ + + +HAA HA L+ P+ D+ EC
Sbjct: 943 IDVPNTLLQLMQSKGINAAEAIHAAQHAFLNQFPLA-----EDIRTEC 985
>gi|451948554|ref|YP_007469149.1| helicase family protein with metal-binding cysteine cluster
[Desulfocapsa sulfexigens DSM 10523]
gi|451907902|gb|AGF79496.1| helicase family protein with metal-binding cysteine cluster
[Desulfocapsa sulfexigens DSM 10523]
Length = 987
Score = 364 bits (935), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 247/765 (32%), Positives = 389/765 (50%), Gaps = 87/765 (11%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E ++ L+ Q+V + +K + P L D S L GI KLYSHQ ++
Sbjct: 15 EYLQALKNSPKYGPQVVCHKTFPEQKGAYIPFPTTLPDILTSCLLQQGIEKLYSHQGKAY 74
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
GKNV AT TSSGKSL YNLPVLE++ D S+ ALY+FP KALAQDQLR L
Sbjct: 75 KEIRNGKNVFAATPTSSGKSLIYNLPVLESIYRDRSTKALYLFPLKALAQDQLRVLQKFD 134
Query: 325 KAF------DASIDIGVYDGDTTQKDRMWLRD-NARLLITNPDMLHMSILPYHGQFSRIL 377
+ F + +YDGDT+ + R +R +LI+NPDMLH+S+LPYH ++
Sbjct: 135 EIFYSDKQKNTHTLAALYDGDTSARQRKKIRTCPPDILISNPDMLHLSMLPYHSSWAPFF 194
Query: 378 SNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDP 437
L+ ++VIDE H Y+G FG H + +LRRL R+ +YG+ P
Sbjct: 195 KELK-------------------YIVIDEVHIYRGVFGAHMSWVLRRLQRILE-LYGARP 234
Query: 438 SFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDM 497
+F+ +AT NP + +L + ++ + +P +++ + NP
Sbjct: 235 TFILLSATIGNPEQFAEKLIGQQVVSIVASS-APRSKRNMLFLNPW-------------- 279
Query: 498 DDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLV 557
N+A T S + E S ++ GLR I + SRK+ EL+ +T+ L + L
Sbjct: 280 ----NSAAHTVSQLLEAS------LKRGLRTIVYTGSRKMAELITMWTKPNLGK----LG 325
Query: 558 DSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASL 617
+ YR+G++ E+RR IERD GKL GV +T+ALELGID+G +D+ + G+PGS+ +
Sbjct: 326 SKLSSYRSGFLPEERRLIERDLNSGKLLGVISTSALELGIDIGDLDLCILAGYPGSVMAT 385
Query: 618 WQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVC 677
WQ+ GR GR + S + VA E LDQY+M+ E F +E I+ N +++EQHL C
Sbjct: 386 WQRGGRVGRGRKESAIILVAQEDALDQYYMQNHEDFFSRTMESAIINPFNSQIMEQHLHC 445
Query: 678 AALEHPLSLIYDE-KYFGSGLSSGITTLKNRGYL--SSDPSLDSSAKIFEYIGHEKMPSH 734
AA E +S+ +E F + + L ++G L SSD E+ K P
Sbjct: 446 AAAE--VSIHKNELAVFPLIIKKAVKELTSQGILLQSSDGK--------EFFATRKYPQR 495
Query: 735 TISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIA 794
+S+R + ++I + EVL EI+ +AF + + GAVY+H T+LV ++ +
Sbjct: 496 QVSLRG-SGRQLQIIREDNGEVLGEIDSGRAFKECHPGAVYLHSSITWLVHTCDIENSEI 554
Query: 795 LCQKADLKYFTK--TRDYTDI-HVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFY 851
+ Y T+ ++ +T+I V ++S +L V G+
Sbjct: 555 VVSPFRENYHTRPVSQKHTEILKVIDQKEEPGYRVSLGKL----------IVREKVTGYQ 604
Query: 852 RLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVK-AVVEQNFSFRSGLHAASHALLHV 910
+ + + +++L LP+ S E+ +W+++P+S K + EQ F +HA HA++ +
Sbjct: 605 KRNNRNNKLMGSIQLDLPEQSLETVGLWLEIPESTKLEIEEQQLHFMGAIHALEHAMIGM 664
Query: 911 VPIYVRCNFSDLAP-ECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
P+ V C+ D+ CP H + + +YD +PGG G+ +
Sbjct: 665 FPLLVLCDRYDIGGISCPAHHQTS--EAVVFIYDGYPGGMGLCNE 707
>gi|376296699|ref|YP_005167929.1| hypothetical protein DND132_1920 [Desulfovibrio desulfuricans
ND132]
gi|323459261|gb|EGB15126.1| Protein of unknown function DUF1998 [Desulfovibrio desulfuricans
ND132]
Length = 1005
Score = 363 bits (933), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 237/766 (30%), Positives = 378/766 (49%), Gaps = 120/766 (15%)
Query: 245 KSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSAL 304
+SAL GI KLY HQAE++ AG++VVVAT T+SGK+L YNLPV+E + D S AL
Sbjct: 47 QSALSLLGIEKLYDHQAEAVDYVRAGRHVVVATPTASGKTLTYNLPVMEQILADPESKAL 106
Query: 305 YMFPTKALAQDQLR------ALLAMTKAFDASIDIGVYDGDTTQKDRMWLRD-NARLLIT 357
Y+FP KALAQDQL+ ALL + D +YDGDT+ R +R+ ++++
Sbjct: 107 YLFPLKALAQDQLKGFNELAALLPLNGREDRRPTAAIYDGDTSPHFRKKIRNAPPNVILS 166
Query: 358 NPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCH 417
NP+M+H+S+LP+H ++ LS L +V+DE H Y+G G H
Sbjct: 167 NPEMVHLSMLPHHAGWAEFLSGL-------------------THIVVDEVHTYRGVMGGH 207
Query: 418 TALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLF 477
A++ RRL RLC + YG++P+FVF +AT NP E C L L ++++ G+ +
Sbjct: 208 MAMVFRRLMRLCRY-YGANPTFVFCSATIGNPSELCRMLTGLEVHPILES-GAARGGRHM 265
Query: 478 VLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKL 537
+ NP S ++ +S L A + + GLR I +C+SRK+
Sbjct: 266 IFVNPDG-----------------------SPSMAAISLLRAALAR-GLRTIVYCQSRKM 301
Query: 538 CELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGI 597
EL+ + E + I YRAG++ E+RR IE G+L V +T+ALELGI
Sbjct: 302 TELISMWA----AEKSGEFKGRISAYRAGFLPEERREIEARMADGELLAVISTSALELGI 357
Query: 598 DVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSP 657
D+G +DV + +G+PGSI + Q+ GR GR +R S +A E LDQYFM+ P+ F P
Sbjct: 358 DIGGLDVCIMVGYPGSIMATLQRGGRVGRSQRDSAVALIAQEDALDQYFMRNPDDFFARP 417
Query: 658 IECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSG-LSSGITTLKNRGYL-SSDPS 715
E ++ N ++++HL+CAA E L+L E + ++ + L G L +P
Sbjct: 418 PESAMLNPFNPVIMDRHLICAAAE--LTLRRGEPFLAEPEVARRVEQLVAAGELFEVEPD 475
Query: 716 LDSSAKIFEYIGHEKMPSHTISIRAIESERY-EVIDMQ---------------------- 752
L E + H K P + +R S+ + E I Q
Sbjct: 476 LPGHP--VEIVTHRKRPHRDVDLRGAGSQMHIEDITAQLQSIQNGSSARRENDSGPPRSE 533
Query: 753 --------------------SNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSK 792
V+ I++ +A+ + + GAVY+H+G T+++++L+ ++
Sbjct: 534 PTQGVESFEATKRSGRFQSIRAPVIGTIDQYRAYRETHPGAVYLHRGRTFVIRDLDPATN 593
Query: 793 IALCQKADLKYFTKTRDYTD---IHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFG 849
+ + Y+TK R D + V G ++ T++ ++ VT G
Sbjct: 594 AVHAEARRVGYYTKPRGSKDTEILEVLGQKASFGTRVYFGRV----------KVTEMITG 643
Query: 850 FYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNF-SFRSGLHAASHALL 908
+ + G + V L LP +E++A+W ++ ++ E+ F F G+HA HA +
Sbjct: 644 YEKRSVRGGKLLGIVPLDLPPQVFETEAIWFEIGHDIRRRCEEEFLHFMGGIHAFEHAAI 703
Query: 909 HVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
++P+ V + +DL H P + +YD PGG G+++Q
Sbjct: 704 GMLPLLVMTDRNDLGGISTPLHPQVEGPA-VFIYDGMPGGAGLTRQ 748
>gi|317154839|ref|YP_004122887.1| hypothetical protein Daes_3149 [Desulfovibrio aespoeensis Aspo-2]
gi|316945090|gb|ADU64141.1| Protein of unknown function DUF1998 [Desulfovibrio aespoeensis
Aspo-2]
Length = 987
Score = 363 bits (933), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 228/742 (30%), Positives = 368/742 (49%), Gaps = 95/742 (12%)
Query: 246 SALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALY 305
SAL GI LY+HQA+++ + AG +VVVAT T+SGKSLCYNLPVL+ D + ALY
Sbjct: 48 SALSLHGIEILYAHQAQAVDHARAGHHVVVATPTASGKSLCYNLPVLDHCLADPEAKALY 107
Query: 306 MFPTKALAQDQLRALLAMTKAFDASIDIG-------VYDGDTTQKDRMWLRD-NARLLIT 357
+FP KALAQDQL+ + D G +YDGDT+ R +R+ ++++
Sbjct: 108 LFPLKALAQDQLKGFNELAGLLPVGPDQGGRRPTAAIYDGDTSPHFRKKIRNAPPSVIMS 167
Query: 358 NPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCH 417
NP+M+H+S+LP+H ++ LS L +VV+DE H Y+G G H
Sbjct: 168 NPEMVHLSMLPHHAAWAEFLSGL-------------------SYVVVDEVHTYRGVMGSH 208
Query: 418 TALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLF 477
A++ RRL RLC + YG+ P+F+F +AT NP C L L ++++ + + +
Sbjct: 209 MAMVFRRLLRLCEY-YGARPTFIFCSATIGNPVALCRMLTGLEVHPVLESGAARGLRHML 267
Query: 478 VLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKL 537
+ N SP L + +R I +C+SRKL
Sbjct: 268 FI-------------------------NPEGSPAQAAIQLLRSALARDMRTIVYCQSRKL 302
Query: 538 CELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGI 597
EL+ + E + + I YRAG++ E+RR IE G+L V +T+ALELGI
Sbjct: 303 TELIALWA----AERSGQYRERISAYRAGFLPEERREIEARMASGELLAVISTSALELGI 358
Query: 598 DVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSP 657
D+G +D+ + +G+PGSI + Q+ GR GR R S+ VA E LDQYFM++PE F P
Sbjct: 359 DIGGLDLCIMVGYPGSIMATQQRGGRVGRTARDSVVALVAQEDALDQYFMRHPEDFFARP 418
Query: 658 IECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYF-GSGLSSGITTLKNRGYL------ 710
E ++ N ++++HL+CAA E L+L E + + + + L G+L
Sbjct: 419 PESAMLNPYNPVIMDRHLICAAAE--LTLRRGETFLREEPVGTRVDQLVAAGHLFEVAGT 476
Query: 711 -----SSDPSLDSSAKIFEYIGHEKMPSHTISIRA----IESERYEVIDMQSNE-----V 756
+ + S E I K P + +R + E +D + E V
Sbjct: 477 TTGPTTRPRTGPGSEPSGEIITSHKHPHRDVDLRGAGRSMHIEDITGLDSEGGEGGKRPV 536
Query: 757 LEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTD---I 813
+ ++ +AF + + GAVY+H+G TY++ ++++ + ++A + Y+T+ R D +
Sbjct: 537 IGTLDAHRAFREAHPGAVYLHRGQTYVIDDMDMGTMAVRARRARVGYYTRPRGSKDTEIL 596
Query: 814 HVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSY 873
V G + T++ +L VT G+ + G + L LP +
Sbjct: 597 EVLGTRACFGTRVHFGRL----------KVTEQVTGYEKRAVRGGKLLGITPLDLPPLRF 646
Query: 874 ESQAVWIQVPQSVKAVVEQNF-SFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDS 932
E++ +W ++P +V+ E+ + F G+HA HA + ++P+ V + +DL H
Sbjct: 647 ETEGLWFEIPHAVRTRCEEEYLHFMGGIHAFEHAAIGMLPLLVMTDRNDLGGISTPMHPQ 706
Query: 933 RYFPERILLYDRHPGGTGVSKQ 954
P + +YD PGG G+++Q
Sbjct: 707 VEGPA-VFIYDGMPGGAGLTRQ 727
>gi|289763826|ref|ZP_06523204.1| DeaD/DeaH box family ATP-dependent RNA helicase [Mycobacterium
tuberculosis GM 1503]
gi|289711332|gb|EFD75348.1| DeaD/DeaH box family ATP-dependent RNA helicase [Mycobacterium
tuberculosis GM 1503]
Length = 771
Score = 363 bits (933), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 243/740 (32%), Positives = 376/740 (50%), Gaps = 62/740 (8%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
HV ++ + P+ + A GIS +SHQAE+ + AG++VV+ T +S
Sbjct: 25 HVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPWSHQAEAAELAYAGRHVVIGTGPAS 84
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIG--VYDGD 339
GKSL Y L VL AL+ D + ALY+ PTKAL DQLRA A+ A D+ YDGD
Sbjct: 85 GKSLAYQLLVLNALATDSRARALYLSPTKALGHDQLRAAHALAAAVPRLADVAPTAYDGD 144
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
+ + R + R+ +R L +NP+M H+S+L H +++ +L NLR
Sbjct: 145 SPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAVLLRNLR------------------ 186
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
FV++DE H Y+G FG + A++LRRL RLC+ Y + P+ +F++AT+A+P +L
Sbjct: 187 -FVIVDECHYYRGVFGSNVAMVLRRLLRLCAR-YSAHPTVIFASATTASPGATAADLIGQ 244
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
+E + DGSP + LW P LRS D+ A + S+ +E + + A
Sbjct: 245 PVVE-VTEDGSPRGARTVALWEP--ALRS-------DVIGEHGAPVRRSA-GAEAARVMA 293
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDF 579
+++ G + + F RSR+ EL R L + AP L D++ YRAGY+AEDR + +
Sbjct: 294 DLIVEGAQTLTFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQAL 353
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFE 639
G+L G+A TNALELG+D+ +D + GFPG++AS WQQAGRSGRR + +L V +A +
Sbjct: 354 AEGQLRGLATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARD 413
Query: 640 GPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSS 699
PLD Y + +P L P+E ID N +L L+CAA E PL D + G
Sbjct: 414 DPLDTYLVHHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLD---DAEVRSWGAVE 470
Query: 700 GITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEE 759
+L + G L + + F G + P + +R + +++ + +L
Sbjct: 471 VAESLVDDGLLRR-----RNGRYFPAPGVK--PHAAVDVRGAIGGQIVIVEAGTGRLLGS 523
Query: 760 IEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGN 819
+ +A + GAVY+HQG TY+V L+ I+ D Y T R+ TDI V+G
Sbjct: 524 VGVGQAPAAAHPGAVYLHQGETYVVDSLDFQDGISFVHAEDPGYATFAREVTDIAVTGTG 583
Query: 820 NAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVW 879
+ + TVT G+ R + SG + D VEL +P+++ + AV
Sbjct: 584 E-------RLVFGPVALGLVPVTVTNHVVGYLRR-QLSGEVLDFVELDMPEHTLPTTAVM 635
Query: 880 IQVPQS--VKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPE 937
+ V++ +E LHAA HA + ++P+ C+ D+ + PE
Sbjct: 636 YTITSDALVRSGIEAT-RIPGSLHAAEHAAIGLLPLVASCDRGDI-----GGMSTATGPE 689
Query: 938 ---RILLYDRHPGGTGVSKQ 954
+ +YD +PGG G +++
Sbjct: 690 GLPSVFVYDGYPGGAGFAER 709
>gi|303326286|ref|ZP_07356729.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Desulfovibrio sp.
3_1_syn3]
gi|302864202|gb|EFL87133.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Desulfovibrio sp.
3_1_syn3]
Length = 1065
Score = 363 bits (933), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 239/726 (32%), Positives = 370/726 (50%), Gaps = 77/726 (10%)
Query: 248 LKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMF 307
L+ G+ +LYSHQA + AG +VVVAT T+SGKSL YNLPVLE HD + ALY+F
Sbjct: 77 LEERGV-RLYSHQALATDHIRAGHSVVVATPTASGKSLIYNLPVLERHLHDPDARALYLF 135
Query: 308 PTKALAQDQLRALLAMTKAFD--ASIDIGVYDGDTTQKDRMWLR-DNARLLITNPDMLHM 364
P KALAQDQL A A+T + A +YDGDT+ R +R D +L++NP+MLH+
Sbjct: 136 PLKALAQDQLAAFTALTATWPEAARPTAALYDGDTSDHFRRKIRRDPPTVLVSNPEMLHL 195
Query: 365 SILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRR 424
ILP+H Q++ L+ L VV+DEAH Y+G FG H A + RR
Sbjct: 196 GILPHHEQWAAFLAGLT-------------------HVVVDEAHTYRGVFGAHMAQVFRR 236
Query: 425 LCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTS 484
L RL YG+ P++V TAT NP E L++ + D +P V+ P +
Sbjct: 237 LNRLAGR-YGARPTYVLCTATVGNPGE-------LASGLIGAGDSAPV-----VVEEPGA 283
Query: 485 CLRSVLNKSQTDMDDTRNAA---------NKTSSPISEVSYLFAEMVQHGLRCIAFCRSR 535
+ + DT A N SP + L + LR I +CRSR
Sbjct: 284 MAETPRPADAPVVIDTSGAPQGPRHFVFLNPEQSPATAAIDLLKAALARNLRTIVYCRSR 343
Query: 536 KLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALEL 595
++ ELV + ++ P+ + I YRAG++ E+RR IE G+L V +T+ALEL
Sbjct: 344 RMTELVSLWAGS---QSGPY-KERISAYRAGFLPEERRSIEARMASGELLAVVSTSALEL 399
Query: 596 GIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFK 655
GID+G +DV + +G+PG++ + Q+ GR GR ++ S + VA E LDQYF + PE F
Sbjct: 400 GIDIGGLDVCILVGYPGTVMATLQRGGRVGRAQQESAVIVVAGEDALDQYFARNPEDFFS 459
Query: 656 SPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGS-GLSSGITTLKNRGYLSSDP 714
P E ++ N +L +HL CAA E PLS DE + S G + L+ + L
Sbjct: 460 RPPEKAVVNPDNEVILARHLECAAAELPLSA--DEPWLQSAGARRAVRELRKQSLLL--- 514
Query: 715 SLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAV 774
SA +++ K P + +R + Y + D Q+ V+ ++ +A+ + + GAV
Sbjct: 515 ---QSADGRQWLAARKRPQRLVDLRGT-GQSYSIED-QAGAVIGSVDGFRAWRETHPGAV 569
Query: 775 YMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKT 834
Y+H+G TY+++E++ ++A++ +FT+TR +T I ++
Sbjct: 570 YLHRGRTYVIEEVDPGRAAIRAKEANVSWFTRTR-----------GQKSTDILEETERLA 618
Query: 835 TAQALAC----TVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVV 890
+ L C +T G+ + + V L +P +E++ +W +P +V+A +
Sbjct: 619 IGRCLVCRGRLRITERITGYEKRATSGNRLLTIVPLDVPPQVFETEGLWYVIPDAVRAGL 678
Query: 891 EQNF-SFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGT 949
E+ F F +HA HAL+ ++P+ V + +D H P + +YD PGG
Sbjct: 679 EERFLHFMGSIHALEHALIGLLPLQVMADRNDFGGISIPLHPQTGLPC-VFVYDGLPGGA 737
Query: 950 GVSKQV 955
G+++Q
Sbjct: 738 GLTRQA 743
>gi|389581414|ref|ZP_10171441.1| helicase family protein with metal-binding cysteine cluster
[Desulfobacter postgatei 2ac9]
gi|389403049|gb|EIM65271.1| helicase family protein with metal-binding cysteine cluster
[Desulfobacter postgatei 2ac9]
Length = 974
Score = 363 bits (933), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 239/762 (31%), Positives = 380/762 (49%), Gaps = 81/762 (10%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLV--EIPDALLDNTKSALKSTGISKLYSHQAE 262
E + L+ G G +V A+ A +I ++ L GI LY+HQA
Sbjct: 5 EYITGLKSFKGFAGDIVSHRTFDAQPAAWASPDIFPCFKNDLSPLLAGVGIKHLYTHQAR 64
Query: 263 SIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQL---RA 319
+I L + V+AT T+SGKSL YNLPV++AL D S+ ALY+FP KALA+DQL
Sbjct: 65 AISLILDRCHTVIATPTASGKSLVYNLPVMDALISDPSAHALYLFPLKALARDQLDTVNK 124
Query: 320 LLAMTKA-FDASIDIGVYDGDTTQKDRMWLRDNA-RLLITNPDMLHMSILPYHGQFSRIL 377
+LA T A F + GVYDGD T + +R++ +L++NP+MLH+++L +H ++
Sbjct: 125 MLAKTGAVFSEPLTAGVYDGDITGYQKTKIRNHPPNILLSNPEMLHLAMLAHHHLWASFF 184
Query: 378 SNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDP 437
NL+ ++V+DE H Y+G G + A + RRL R+C YGSDP
Sbjct: 185 GNLK-------------------YIVVDEVHTYRGVMGSNMAWVFRRLLRIC-RFYGSDP 224
Query: 438 SFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDM 497
F+F +AT ANP + EL L + ++ G+PC +K ++ ++ + +QT +
Sbjct: 225 CFIFCSATIANPGQLASELTGLP-VTVVDEQGAPCGKKDILM------MKGLEGAAQTAI 277
Query: 498 DDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLV 557
L V L I + +SRK+ EL+ + + A +
Sbjct: 278 T------------------LIHAAVYRNLATIVYTQSRKITELIALWA----GQRAKTMA 315
Query: 558 DSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASL 617
D IC YRAG++ E+RR IE+ G+L V +T+ALELGID+G++D+ + +G+PG++ S
Sbjct: 316 DKICAYRAGFLPEERREIEQKLANGELLCVVSTSALELGIDIGNLDLCILVGYPGTMMST 375
Query: 618 WQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVC 677
WQ+AGR GR S + +A E LDQYF+ +P+ F P E I+ +N ++L++HL C
Sbjct: 376 WQRAGRVGRGGNDSAMILIAHEDALDQYFINHPDIFFTMPPETARINPENPQILDRHLDC 435
Query: 678 AALEHPLSLIYDEKYFGSG-LSSGITTLKNRG--YLSSDPSLDSSAKIFEYIGHEKMPSH 734
AA E LSL D+ + + L +G LS D + + K P
Sbjct: 436 AAAE--LSLDADDPMLRPPVVQERVQALGRQGRLLLSRDGN--------TWFSPRKRPHR 485
Query: 735 TISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIA 794
+S+R + ++ + L EI+ +++F+ +EGAVY+H+G T++V + +
Sbjct: 486 EVSLRG-SGHTIPIFKEETRQSLGEIDRHRSYFETHEGAVYLHRGQTFVVTLFDHLKGVV 544
Query: 795 LCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLW 854
++ + Y+T+ R N + K K T Y +
Sbjct: 545 RAKEEKVSYYTRARS--------SKNTEIISVEKTCQVKGTRVGFGKLKIREQVTGYEMK 596
Query: 855 RGSG-IIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNF-SFRSGLHAASHALLHVVP 912
SG V L LP+ YE+Q +WI++P ++ VE F F G+HA HA + ++P
Sbjct: 597 SVSGQKSLGIVPLDLPELIYETQGLWIEIPDWIRQRVEMKFLHFMGGIHALEHAAIGMMP 656
Query: 913 IYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
+ V + +DL P + + +YD PGG G++ Q
Sbjct: 657 LLVMTDRNDLG-GISMPFHPQLETAVVFVYDGVPGGLGLTLQ 697
>gi|410464923|ref|ZP_11318307.1| helicase family protein with metal-binding cysteine cluster
[Desulfovibrio magneticus str. Maddingley MBC34]
gi|409981966|gb|EKO38471.1| helicase family protein with metal-binding cysteine cluster
[Desulfovibrio magneticus str. Maddingley MBC34]
Length = 987
Score = 363 bits (932), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 234/738 (31%), Positives = 372/738 (50%), Gaps = 71/738 (9%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+VH + A AV + L + GI LYSHQA + + AG++V VAT T
Sbjct: 44 VVHHRVLPATPAVFADPARPFSRAVAGLLTAKGIPTLYSHQARATDLARAGRHVAVATPT 103
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL--LAMTKAFDASIDIGVYD 337
+SGK++ Y LPVLE + + S A++++P KALAQDQ +A+ LA + A +YD
Sbjct: 104 ASGKTMTYLLPVLEEVIRNPDSRAIFLYPLKALAQDQQKAIRELAASLPESARPTTAIYD 163
Query: 338 GDTTQKDRMWLRDNA-RLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIF 396
GDT+ R +RDN +LITNP+MLHMS+LP+H +S + + L
Sbjct: 164 GDTSPHFRRKIRDNPPHILITNPEMLHMSLLPHHENWSTLFAGLS--------------- 208
Query: 397 LFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMEL 456
VV+DE H Y+G G H A + RRL R+C +G+ P++VFS+AT NP + +L
Sbjct: 209 ----HVVVDEMHTYRGVMGSHMAHVFRRLTRVCRR-FGTSPAYVFSSATIGNPGQLAEDL 263
Query: 457 ANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSY 516
L + ++ G+P A + F+ NP S +
Sbjct: 264 TGLPVTTVTES-GAPTAARHFLFLNPEQ------------------------SAATTAVM 298
Query: 517 LFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIE 576
L A ++ GLR I + +SRK+ EL+ + I E+ P+ + YR+G++ E+RR IE
Sbjct: 299 LLAAALKRGLRTIVYTQSRKMTELISLW---IKEKAGPY-ASRVSAYRSGFLPEERRDIE 354
Query: 577 RDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYV 636
G+L GV +T+ALELGID+G +D+ + G+PGS+ S WQ+ GR GR R S V +
Sbjct: 355 AAMASGRLLGVVSTSALELGIDIGGLDLCILCGYPGSVMSAWQRGGRVGRAGRESAVVLI 414
Query: 637 AFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSG 696
A E LDQYFM++P + F P E I+ N + +HL CAA E P+ L D +G
Sbjct: 415 AGEDALDQYFMRHPAEFFDRPPESAVINPANPAIAAKHLECAAAELPIELT-DPLLADAG 473
Query: 697 LSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEV 756
+ + L+++G L D + Y K P +++R + V
Sbjct: 474 IRAEAERLEDKGLLLRD------REGTRYFAARKRPHRDVNLRGSGG---QFTIEAGGAV 524
Query: 757 LEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVS 816
+ +I+E +A+ + + GAVY+H+G +YLV+ L++ + + + Y+T+ R +
Sbjct: 525 IGQIDEMRAYRETHPGAVYIHRGVSYLVESLDIPERRVVVAPGTVDYYTRARGQKTTEI- 583
Query: 817 GGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQ 876
+ + Q+ VT T G+ R G + V L LP +E++
Sbjct: 584 ------LEVLGEKQVNGVPVFLGRLKVTETVTGYERRRARGGQLLSIVPLDLPPMVFETE 637
Query: 877 AVWIQVPQSVKAVVEQN-FSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYF 935
+W +PQ V+A +++ F F +HA HA++ ++P+ V + +DL P +
Sbjct: 638 GLWWVIPQDVQAELDKRLFHFMGAIHAMEHAMIGILPLLVLTDRNDLG-GISTPLHPQVG 696
Query: 936 PERILLYDRHPGGTGVSK 953
+ +YD PGG G+++
Sbjct: 697 RACVFVYDGAPGGVGLTR 714
>gi|359411623|ref|ZP_09204088.1| DEAD/DEAH box helicase domain protein [Clostridium sp. DL-VIII]
gi|357170507|gb|EHI98681.1| DEAD/DEAH box helicase domain protein [Clostridium sp. DL-VIII]
Length = 887
Score = 363 bits (932), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 247/762 (32%), Positives = 391/762 (51%), Gaps = 70/762 (9%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+++ + I R+AV V+ P+ L + L GI KLY HQ E ++ G N+V+ T T
Sbjct: 7 IIYNKTIPKREAVYVDYPNNLSQELCTYLSKKGIEKLYCHQGEMFERAVEGNNIVITTST 66
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDAS-IDIGVYDG 338
+SGK+L + LPV++ + + + A++++PTKALA DQ RA+L + F ++ I GVYDG
Sbjct: 67 ASGKTLSFLLPVIQEILSNPLARAIFIYPTKALASDQYRAILPYLEYFGSNRISAGVYDG 126
Query: 339 DTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLF 398
DT +R +R NA +++TNP+M++ + LP H +F F IF
Sbjct: 127 DTPVNERSRIRKNANIILTNPEMINAAFLPNHSKF----------GFDF-------IFSN 169
Query: 399 IRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELAN 458
++++VIDE H Y+GAFG H A + RRL R+C + Y S P ++ S+AT ANP E E+
Sbjct: 170 LKYIVIDELHTYRGAFGSHLANVFRRLGRVCRY-YNSSPQYLCSSATIANPVELAEEICG 228
Query: 459 LSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLF 518
LE+ DGSP +K + L P + +D + S+ ++ + L
Sbjct: 229 HKFLEVCM-DGSPAPKKNYKLVQPPKIMG----------NDKKYYGQVQSTSVA--ADLI 275
Query: 519 AEMVQHGLRCIAFCRSRKLCELVLSYTREILEET---APHLVDSICVYRAGYVAEDRRRI 575
++V++ IAF +SR+ E+VL R+ LE L D I YR GY +R+ I
Sbjct: 276 PDLVENDNSFIAFAKSRRNVEVVLKEARDKLETENFFGASLKDKISGYRGGYTPLERKEI 335
Query: 576 ERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVY 635
E G L G+ +TNALELGID+G ID T+ +G+PG+ AS WQQ+GR+GR S Y
Sbjct: 336 ENKMITGVLRGLVSTNALELGIDIGKIDTTVIVGYPGTRASFWQQSGRAGRSGIESTN-Y 394
Query: 636 VAFEG-PLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFG 694
+ F+ P DQY P+ LF+S E ID N + H+ AA E PL+L D+
Sbjct: 395 LIFDNLPFDQYIAINPDWLFESGSENAVIDKNNLLIELAHIRAAAAEIPLTL--DDISIF 452
Query: 695 SGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN 754
L I L L+ + S K F + G+ P+ S+R I+ RY++I+ +N
Sbjct: 453 PDLGETIPVLIRASELT-----NQSGK-FAWCGN-SFPAGDFSLRNIDKARYKLINKDNN 505
Query: 755 EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIH 814
+ + E++E +AF +++ GA+YMH G Y V +L+L S+ A + Y+T T+I
Sbjct: 506 KEITEMDEMQAFREIHNGAIYMHDGVQYQVVKLDLESRTAFAIPFNGNYYTMPGGTTNIR 565
Query: 815 VSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYE 874
+ G +K + + TK T + + + + F+ +E L K Y+
Sbjct: 566 IIQG-----SKDMEYERTKVTFGDVNVDEIVYMYKKLQFHNHQNLGFEQLEKPLSK-DYD 619
Query: 875 SQAVWIQVPQSVKAVVE------QNFSFRSGLH--AASHALLHVVPIYVRCNFSDL---- 922
+++ WI++P +V V QN F H +A+ + + D+
Sbjct: 620 TESTWIRIPDNVVTVYRRLLQESQNGGFIRNNHFEGVCYAIKNAAMMATMTEQEDIGVVM 679
Query: 923 ---APECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDMKMN 961
A E +DS + + +YD++ GG G S++V D+ N
Sbjct: 680 SNNAIEISQNYDSEVY---MFIYDKYVGGLGYSEKVFDLTAN 718
>gi|379011659|ref|YP_005269471.1| putative ATP-dependent helicase [Acetobacterium woodii DSM 1030]
gi|375302448|gb|AFA48582.1| putative ATP-dependent helicase [Acetobacterium woodii DSM 1030]
Length = 903
Score = 363 bits (931), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 242/768 (31%), Positives = 392/768 (51%), Gaps = 78/768 (10%)
Query: 217 QGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVA 276
Q +++ + I+ R+ + P L L + GI++LYSHQAE A+ A KN+V+
Sbjct: 4 QDLIIYQKTIAKREGCYADFPARLSAEIGDFLSTRGITRLYSHQAEMFEAAQAQKNIVIT 63
Query: 277 TMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAF-DASIDIGV 335
T T+SGK+L + LPVL+ + + ++ A++++PTKALA DQ RAL+ + F + I GV
Sbjct: 64 TTTASGKTLSFLLPVLQEILSNPTARAIFVYPTKALASDQYRALVPYLEYFGENRISAGV 123
Query: 336 YDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLI 395
YDGDT +R +R NA +++TNP+ML+ + L H +F I
Sbjct: 124 YDGDTPVNERSRIRKNANIILTNPEMLNSAFLSNHSKFG-----------------FDFI 166
Query: 396 FLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCME 455
F ++++VIDE H Y+GAFG H A + RR R+C + Y S P ++ S+AT ANP E
Sbjct: 167 FANLKYLVIDELHTYRGAFGSHLANVFRRFKRICRY-YHSAPQYLCSSATIANPLELAQG 225
Query: 456 LANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVS 515
+ +++ Q DGSP AQ+ ++L P ++ + Q D+ + P + +
Sbjct: 226 ICGQPFIQIDQ-DGSPAAQRTYLLVQPPR----IVGRDQQDLGQLQ--------PTTIAA 272
Query: 516 YLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETA---PHLVDSICVYRAGYVAEDR 572
L ++V+ IAF +SRK E+VL +R+ LE + P L D I YR GY +R
Sbjct: 273 NLIPDLVEGEHNFIAFAKSRKNVEIVLKESRDNLETESFFGPALTDKISGYRGGYTPLER 332
Query: 573 RRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSL 632
+ IE+ G + G+ +TNALELGID+G+ID T+ +G+PG+ AS WQQ GR+GR +
Sbjct: 333 KEIEKKMITGAIRGLVSTNALELGIDIGNIDTTVLVGYPGTRASFWQQTGRAGRCGKDCT 392
Query: 633 AVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKY 692
+ P DQY P+ LF+S E ID N + H+ AA E PL+L D+
Sbjct: 393 NYLILDNQPFDQYIAINPDWLFESSSENAVIDPNNLLIQLAHIRAAAAEIPLTL--DDIA 450
Query: 693 FGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQ 752
L I L L+S + K F + G + P+ S+R I+ RY++I+ +
Sbjct: 451 LFPDLGETIPVLLRAHELTS-----QNGK-FAWTG-QAFPAGDFSLRNIDQSRYKLINQE 503
Query: 753 SNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTD 812
+N+ + E++E +AF ++++GA+YMH G + V LNL S A + Y+T +T
Sbjct: 504 NNQEITEMDEMQAFRELHQGAIYMHDGVLFEVIRLNLESHTAFAIPFNGNYYTMPGSHTQ 563
Query: 813 IHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYR---LWRGSGIIFDTVELYLP 869
I + A + ++++ Q+ K A Y+ + ++ E L
Sbjct: 564 IRII----AASHELNEKQIEKRINGAFGDVNVNEMVYMYKKLQFHNHQNLGYEQFEKPLA 619
Query: 870 KYSYESQAVWIQVPQSVKAV------------VEQNFSFRSGLHAASHALLHV------- 910
K Y++++ WI +P +V ++ + QN F +A +A +
Sbjct: 620 K-DYDTESTWINLPANVVSIYRRLIQWSQNGQIIQNNHFEGVAYAIKNATMMATMTERED 678
Query: 911 VPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDM 958
+ + V N DL + D + + LYDR+ GG G +++ D+
Sbjct: 679 IGVTVSNNAIDLGIDS----DEDVY---LYLYDRYIGGLGYAEKAFDL 719
>gi|344302350|gb|EGW32655.1| hypothetical protein SPAPADRAFT_138093 [Spathaspora passalidarum NRRL
Y-27907]
Length = 1139
Score = 363 bits (931), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 263/818 (32%), Positives = 409/818 (50%), Gaps = 106/818 (12%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKA-----VLVEIPDALLDNTKSAL-KSTGIS---K 255
EM++ L+ Q Q+ V+ + K + + D + + K AL + GIS
Sbjct: 247 EMIQALKDSRIYQDQIAIVQTLDQAKGPEYNQLSARVSDTIHPDLKQALLAAKGISIDEG 306
Query: 256 LYSHQAESIMASLAG-KNVVVATMTSSGKSLCYNLPVLEALSHDLSS-------SALYMF 307
LY+HQ ++ L+ +V+V+T T+SGKSL Y +P+L A+ D+ S +A ++F
Sbjct: 307 LYTHQTMALENLLSNDSHVIVSTPTASGKSLIYQIPMLNAILWDIQSGLKTRYSTAFFIF 366
Query: 308 PTKALAQDQLRALLAMTK---AFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHM 364
PTKALAQDQLR L K I + YDGDT K+R + + +L TNPD +H
Sbjct: 367 PTKALAQDQLRHLRDFIKYIPNLKRPITVNAYDGDTPFKEREQIMKESDILFTNPDTIHA 426
Query: 365 SILP--YHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALIL 422
SILP ++G + L+ L+ FVV+DE H Y+G FG + + ++
Sbjct: 427 SILPKNHYGPWKEFLTQLK-------------------FVVMDELHVYRGTFGINVSFVM 467
Query: 423 RRLCRLCSHVYGSDPS--FVFSTATSANPREHCMELANLS---TLELIQNDGSPCAQKLF 477
RL R+ + D FV +AT NP H + +LS T+ + DGSP +K
Sbjct: 468 GRLQRINHMLSPGDKPVRFVSCSATIQNPVSHFRAVCSLSQEDTVVHVAQDGSPHCEKKL 527
Query: 478 VLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQ---------HGLRC 528
V+WNP + +K +TD ++SP++ + AE + ++
Sbjct: 528 VVWNPPLLMNKRGDKQKTD----------SNSPMAPRVGMIAESAKVLLSLLSAYKEIKA 577
Query: 529 IAFCRSRKLCELVLSYTREILEETA--PHLVDS--ICVYRAGYVAEDRRRIERDFFGGKL 584
I FC R +CE+++ R +L+ T+ +D I YR GY DRR IER F G+L
Sbjct: 578 IVFCPIRVVCEMLMKEVRYLLQNTSFSKSGIDQSDILAYRGGYSKSDRRIIERKMFDGQL 637
Query: 585 CGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERP--SLAVYVAFEGPL 642
+ ATNALELGID+ +DV + GFP S ++L QQ GR+GR R SLA++V PL
Sbjct: 638 RAIIATNALELGIDLSDLDVVICCGFPMSKSNLHQQFGRAGRGHRTSGSLAIFVPGRNPL 697
Query: 643 DQYFMKYPEKLF-KSPIECCHIDAQNHK----VLEQHLVCAALEHPLSLIYDEKYFGSGL 697
DQY++ P +L ++ E C +N +LE+HL CAA E + L D K+ G
Sbjct: 698 DQYYLDNPLELVDRTYEELCVQGLRNMDSSSLILERHLQCAAYEEAIDLQNDFKWILPGG 757
Query: 698 SSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNE-- 755
S + + +L LD+ K + P + + IRA+E ++ V+D+ +N
Sbjct: 758 SFKMYSQLVESHL----LLDNDGKYKPHPSFLPKPHNLVQIRAVEEVQFAVVDITNNRNI 813
Query: 756 VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDI-- 813
++EE+E S+ F +YEG +++HQG YLVKE N A ++ ++ + T RD+TDI
Sbjct: 814 IIEEVEASRTSFTLYEGGIFLHQGQQYLVKEFNHKDHYAKVERVNVDWTTSQRDFTDIDP 873
Query: 814 -HVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYS 872
V Y + Q A +T FGF+++ R II + VE+ P
Sbjct: 874 EEVESVKPLYP--MEHPQPLDIPAFFGKIKITMKVFGFFKVNRREEII-EAVEVKNPPVI 930
Query: 873 YESQAVWIQVPQSVKAVVE-QNFSFRSGLHAASHALLHVVPIYVRCNFS--------DLA 923
++ WI VP+ V ++E + S +HA+ HA+++++PI++ + +LA
Sbjct: 931 MHAKGFWINVPRQVLKILEGKQLSAAGAVHASEHAIMNMLPIFINGSPDKGATIGTLELA 990
Query: 924 PECPNP-------HDSRYFPERILLYDRHPG--GTGVS 952
EC P SR P R++ YD G G+G+S
Sbjct: 991 TECKAPTKEFSGRESSRKRPARLIFYDTKGGKLGSGIS 1028
>gi|339499868|ref|YP_004697903.1| DEAD/DEAH box helicase domain-containing protein [Spirochaeta
caldaria DSM 7334]
gi|338834217|gb|AEJ19395.1| DEAD/DEAH box helicase domain protein [Spirochaeta caldaria DSM
7334]
Length = 783
Score = 363 bits (931), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 237/738 (32%), Positives = 366/738 (49%), Gaps = 71/738 (9%)
Query: 233 LVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVL 292
+ IPD + K AL S GI LY+HQ +G++ +V T T+SGK+LCYNLP L
Sbjct: 47 MAPIPDDVDPRLKEALYSRGIQALYTHQVNVWNHVRSGRHTIVVTPTASGKTLCYNLPTL 106
Query: 293 EALSHDLSSSALYMFPTKALAQDQLRAL--LAMTKAFDASIDIGVYDGDTTQKDRMWLRD 350
+AL D + ALY+FPTKAL+QDQ L L K+ I + YDGDT R+ RD
Sbjct: 107 QALLEDEHARALYLFPTKALSQDQQAELNELVNGKSGVLPIKVCTYDGDTPDSLRIAARD 166
Query: 351 NARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAY 410
R++++NPDMLH ILP H ++ + S L+ +VVIDEAH Y
Sbjct: 167 TGRIIVSNPDMLHAGILPNHPKWIKFFSCLK-------------------YVVIDEAHTY 207
Query: 411 KGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGS 470
+G FG H A +LRRL R+ + YGS P + +AT NP+E +L + L+ +G+
Sbjct: 208 RGVFGSHVANVLRRLLRIAA-FYGSHPVMILCSATIGNPKELAEQLIG-QPVSLVDKNGA 265
Query: 471 PCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIA 530
P +K VL+NP + D + S ++E +++ G++ I
Sbjct: 266 PRGEKRIVLYNPP-------------LVDAVQGIRR--SVVTESRRWTVSLLRSGIKTIL 310
Query: 531 FCRSRKLCELVLSYTREILEE--TAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVA 588
F SR E+ SY RE L T H + + YR G + +RR IE+ G + GV
Sbjct: 311 FAHSRLKTEVAASYIREDLANIYTDNHHI-RVEPYRGGLLPNERREIEKGLRDGTIQGVV 369
Query: 589 ATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMK 648
+TNALELGID+G +D + GFPGS S WQQ GR+GRR S+A+++A PLDQY +
Sbjct: 370 STNALELGIDIGGLDAAVVAGFPGSFNSFWQQIGRAGRRGGTSVAIFIASSSPLDQYIIN 429
Query: 649 YPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLS---LIYDEKYFGSGLSSGITTLK 705
+P+ F+S E +D N +L H+ CAA E P + + FGS + + L+
Sbjct: 430 HPDWFFRSSAEEARLDPDNPYILTDHVKCAAFELPFTDADMDLGRDPFGSKVQDVLEYLE 489
Query: 706 NRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQS--NEVLEEIEES 763
G + + S + Y P+ +IS+R+ ++ +ID N V+ E++
Sbjct: 490 EEGIVRA-----VSGRW--YWADRSYPAESISLRSATADNVAIIDTTQGRNIVIGEMDRP 542
Query: 764 KAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGN---- 819
A V++ AVYMH+G YLV +L++ + L ++A++ Y+T TDI V +
Sbjct: 543 SAKELVFDNAVYMHRGRQYLVTKLDIQKRKCLVEEANVNYYTDALVKTDIKVLSEDEKLD 602
Query: 820 --NAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQA 877
++ + D L ++ F R I + T+EL + S A
Sbjct: 603 VPGSWCRLVLGDVLVRSQVAK---------FKKIRFHTHENIGYGTIELPEEELQTRSLA 653
Query: 878 VWIQVPQSVKAVVEQNFSFRSG--LHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYF 935
+ ++ S+ ++ G L + + PI+V C+ D+ D+ +
Sbjct: 654 LLLESDTSLGTALQGRDEQEIGRILSGIGSLIKRIAPIFVLCDQRDIG-ISERVRDTHFM 712
Query: 936 PERILLYDRHPGGTGVSK 953
+ +YD +PGGTG+++
Sbjct: 713 VPALYIYDHYPGGTGLAE 730
>gi|150865932|ref|XP_001385349.2| hypothetical protein PICST_62134 [Scheffersomyces stipitis CBS 6054]
gi|149387188|gb|ABN67320.2| predicted protein, partial [Scheffersomyces stipitis CBS 6054]
Length = 1178
Score = 363 bits (931), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 241/772 (31%), Positives = 393/772 (50%), Gaps = 94/772 (12%)
Query: 256 LYSHQAESIMASLA----GKNVVVATMTSSGKSLCYNLPVLEALSHDL-------SSSAL 304
LYSHQA+++ L G++V+V+T T+SGKSL Y +PVL + D+ S++A
Sbjct: 314 LYSHQADALKTLLQPNSFGRHVIVSTATASGKSLIYQIPVLNEILWDITNGKKSRSTTAF 373
Query: 305 YMFPTKALAQDQLRALLAMTKAFDAS----IDIGVYDGDTTQKDRMWLRDNARLLITNPD 360
++FPTKALAQDQ R L + I + YDGDT +DR ++R A ++ TNPD
Sbjct: 374 FIFPTKALAQDQKRHLEEFISYLPTNEKRKIIVQTYDGDTASRDRNFVRSFADIVFTNPD 433
Query: 361 MLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFL-FIRFVVIDEAHAYKGAFGCHTA 419
+H S+LP H +S + ++ FL ++F+V+DE H YKG FG +
Sbjct: 434 TIHASVLPNHLGYS--------------DSSGWIPFLRSLKFIVVDELHVYKGTFGIQVS 479
Query: 420 LILRRLCRLCSHVYG--SDPSFVFSTATSANPREHCMELANLSTLELI---QNDGSPCAQ 474
++ RL R+ + +D +FV +AT +NP H + + + + NDGSPC++
Sbjct: 480 YVMTRLLRITEKLKNGVNDITFVSCSATISNPVAHFRAVCAIPKCDQVVHVANDGSPCSE 539
Query: 475 KLFVLWNPTSCL------RSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQH--GL 526
+ V+WNP + + +S L S T N ++E + L ++ + +
Sbjct: 540 RKLVVWNPPALMNKKGQIQSTLKSSMTIESTVSNTLIPRVGIVAESARLLVHLLSNLSEI 599
Query: 527 RCIAFCRSRKLCELVLSYTREIL---EETAPHLVD--SICVYRAGYVAEDRRRIERDFFG 581
+ I FC R +CEL+++ R +L + T L++ I YR GY EDRR IE+ F
Sbjct: 600 KVIVFCPIRVVCELLMNEVRHLLRSSDHTERALLNEHDIMSYRGGYSKEDRRVIEQKMFT 659
Query: 582 GKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRE--RPSLAVYVAFE 639
G+L + ATNALELGID+ +D+ + GFP S + + QQ GR+GR + SLA++VA
Sbjct: 660 GQLRAIVATNALELGIDLSDLDIVITCGFPISKSHMHQQFGRAGRARDSKGSLAIFVAGP 719
Query: 640 GPLDQYFM-KYPEKLFKSPIECCHID-----AQNHKVLEQHLVCAALEHPLSLIYDEKYF 693
P+DQY++ Y + L K+ E +D H LEQH+ CAA E PL ++ D K+F
Sbjct: 720 TPIDQYYLSNYKDILDKNSYEDLCVDGLLDLGSYHLTLEQHMQCAAFEDPLDIVEDLKWF 779
Query: 694 GSGLSSG-----ITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEV 748
S+G + + R + +S + PS ++IRAIE + V
Sbjct: 780 APDGSTGKANAFVKICQERLLKDNTGKYRTSPNFLPW------PSDLVTIRAIEESSFAV 833
Query: 749 IDMQS--NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTK 806
+D+ + N V+EE+E S+ F +YEG +++HQG YLV+E N K A ++ ++ + T
Sbjct: 834 VDITNGRNIVIEEVESSRTNFTLYEGGIFLHQGFPYLVREFNADQKFAKVERVNVDWTTS 893
Query: 807 TRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTT-WFGFYRLWRGSGIIFDTVE 865
RD+TD+ + L TT FGF++L R + I+ + V+
Sbjct: 894 QRDFTDMDPMEAQYVKQLYPPNSAVPSDIPVFLGLVKTTIKVFGFFKLNRRNEIL-EAVD 952
Query: 866 LYLPKYSYESQAVWIQVPQSVKAVV-EQNFSFRSGLHAASHALLHVVPIYVRCNF----- 919
+ ++ W+ + V ++ ++ S +G+HAASHA+++++P+++
Sbjct: 953 VKNSPVIIINKGFWVDIGSEVIDIINKKQLSPAAGIHAASHAIINILPVFINGTVDTSSK 1012
Query: 920 --------SDLAPECPNP-------HDSRYFPERILLYDRHPG--GTGVSKQ 954
++L EC P +R P R++ D G G+G+S +
Sbjct: 1013 SYYSGVGEAELVTECKAPEKEFARRESNRKRPARLIFNDSKGGELGSGMSAK 1064
>gi|345887923|ref|ZP_08839061.1| hypothetical protein HMPREF0178_01835, partial [Bilophila sp.
4_1_30]
gi|345041292|gb|EGW45467.1| hypothetical protein HMPREF0178_01835 [Bilophila sp. 4_1_30]
Length = 979
Score = 363 bits (931), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 242/738 (32%), Positives = 367/738 (49%), Gaps = 80/738 (10%)
Query: 248 LKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMF 307
L+ GI+ LYSHQA + AG++VVVAT T+SGK+LCY+LP+LE D S AL +F
Sbjct: 12 LRERGIASLYSHQALTADTVRAGRDVVVATPTASGKTLCYSLPILEKCLQDPDSRALMLF 71
Query: 308 PTKALAQDQLRALLAMTKAFD--ASIDIGVYDGDTTQKDRMWLRDNA-RLLITNPDMLHM 364
P KALAQDQL A +T + A I +YDGDTT R +R N +LITNP+MLH+
Sbjct: 72 PLKALAQDQLAAFGELTGHWPEAARPSIAIYDGDTTDHFRRKIRKNPPNVLITNPEMLHL 131
Query: 365 SILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRR 424
+ILP+H Q++ L++L L VV+DEAH Y+G G H + + RR
Sbjct: 132 AILPFHEQWTTFLASLSL-------------------VVVDEAHTYRGVLGSHISQLFRR 172
Query: 425 LCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLW---- 480
L R+C+ Y + P+FVF TAT NP E NL EL+Q G P
Sbjct: 173 LNRICAR-YAARPNFVFCTATVGNPEELA---GNLLGRELVQEKGLPSENASPFSPLLSP 228
Query: 481 ----NPTSC-LRSVLNKSQ--TDMDDTRNAANKTS-----------SPISEVSYLFAEMV 522
P + LN Q TD+ R + T SP + L +
Sbjct: 229 SSSSEPVALGTERSLNVPQKLTDIPVIRESGAPTGKRHMVFIDPEDSPSTTAIALLKAAL 288
Query: 523 QHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGG 582
GLR I +CRSR++ EL+ + + A I YRAG++ E+RR IE G
Sbjct: 289 ARGLRTIVYCRSRRMTELIALWA----ADKAGSYAGRISAYRAGFLPEERREIEARMSDG 344
Query: 583 KLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPL 642
+L V T+ALELGID+G +DV + +G+PG++ S Q+ GR GR + S + VA E L
Sbjct: 345 QLLAVVTTSALELGIDIGSLDVCILVGYPGTVISTMQRGGRVGRAGQESAVLLVAGEDAL 404
Query: 643 DQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYF-GSGLSSGI 701
DQYF+ PE F E I+ N ++++HL CAA E PL+ D+ + G G + +
Sbjct: 405 DQYFIHQPEAFFGREPERAVINPDNDVIVKRHLECAAAELPLAC--DDPWLRGPGARAAL 462
Query: 702 TTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIE 761
L+ G L SA E++ K P + +R + ++D + + ++
Sbjct: 463 GELEKEGLLL------KSADGREWVAARKRPQRHVDLRGCGAS-CTIVDAEGKPI-GSVD 514
Query: 762 ESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQ--KADLKYFTKTRDYTD---IHVS 816
+A+ + + GAVY+H+G TY+VK L+++ ++ C+ + + + T+ R + + I V
Sbjct: 515 GHQAYKETHPGAVYLHRGKTYVVKSLDMAERVVRCEVPQQRVNWHTRVRSHKETAIIEVK 574
Query: 817 GGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQ 876
+A+ ++ +L VT T G+ + + V L LP +E++
Sbjct: 575 ASGSAFGAPVAFGRL----------RVTETITGYEQRSVADNRLICVVPLDLPPLVFETE 624
Query: 877 AVWIQVPQSVKAVVEQNF-SFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYF 935
+W VP + E + F +HA HA + ++P+ V + +D H
Sbjct: 625 GLWFCVPDGPRRATEDSLMHFMGSIHALEHASIGLMPLMVMADRNDFGGISTPMHAQLGM 684
Query: 936 PERILLYDRHPGGTGVSK 953
P + +YD PGG G+ +
Sbjct: 685 PA-VFVYDGLPGGAGLCR 701
>gi|224369976|ref|YP_002604140.1| ATP-dependent DEAD/DEAH box helicase family protein
[Desulfobacterium autotrophicum HRM2]
gi|223692693|gb|ACN15976.1| ATP-dependent DEAD/DEAH box helicase family protein
[Desulfobacterium autotrophicum HRM2]
Length = 978
Score = 362 bits (930), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 239/739 (32%), Positives = 368/739 (49%), Gaps = 81/739 (10%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
I A+KA + D D + GI +LY HQA + G + V+AT T+SGKSL
Sbjct: 26 IDAKKARYGDPLDT--DPVWQVFQDQGIQRLYEHQARGVALIEKGVHTVIATPTASGKSL 83
Query: 286 CYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASI----DIGVYDGDTT 341
YNLPVL A+ D +S LY+FP KALA+DQL L + +A I VYDGD +
Sbjct: 84 VYNLPVLRAIYGDNASCGLYLFPLKALARDQLGTLETLMAGVNAKIADTLTAAVYDGDLS 143
Query: 342 QKDRMWLRDNA-RLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIR 400
+ +R+N +L+TNP+MLH+++LP+H + +NL+
Sbjct: 144 AYHKAKVRNNPPNVLLTNPEMLHLAMLPHHHLWESFFANLK------------------- 184
Query: 401 FVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLS 460
FVV+DE H Y+G G H A + RRL R+C H YG++P FVF +AT +NP E L L+
Sbjct: 185 FVVVDEVHTYRGVMGSHMAWVFRRLLRICRH-YGAEPVFVFCSATISNPGELSTALTGLA 243
Query: 461 TLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAE 520
+E++ D +P +K +L N S +QT + L
Sbjct: 244 -VEVVDADSAPAGKKDVLLMNGAS------GAAQTAI------------------LLMHA 278
Query: 521 MVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFF 580
+ GLR I + +SRK+ EL+ + + A L I YRAG++ E+R++IE+
Sbjct: 279 AIHRGLRTIVYTQSRKITELIAMWA----SQRAGDLGSRISAYRAGFLPEERQKIEQRLA 334
Query: 581 GGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEG 640
G+L V T+ALELGID+G++D+ + +G+PG+I S WQ+AGR GR + + VA E
Sbjct: 335 SGELLAVVTTSALELGIDIGNLDLCILVGYPGTIMSTWQRAGRVGRDGSDAAMILVAHED 394
Query: 641 PLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSG 700
LD +F+ +P LF P E I+ N ++E+HL CAA + L L DE++
Sbjct: 395 ALDHFFVNHPAMLFDLPPEQAVINPFNPVIMERHLECAAAD--LRLDRDERFLD---DPA 449
Query: 701 ITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEI 760
I R L +D L S + + P +++R +D Q + L ++
Sbjct: 450 IQIALGR--LEADVRLLKSRDGRFWYSARQNPHREVNLRGTGMSIPIFLDGQKKK-LGDV 506
Query: 761 EESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNN 820
+ +AF++ + GAVY+H G TYLV E + + K + YFT+ R +
Sbjct: 507 DRFRAFYETHWGAVYLHHGSTYLVSEFDHENGRVQVVKERVPYFTRAR-----------S 555
Query: 821 AYATKISKDQLTKTTAQALAC----TVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQ 876
+T+I T+ Q C VT GF + + L LP +E++
Sbjct: 556 TKSTEILSVIHTRQVWQTRVCFGRLRVTDQVTGFEKRSVNNQRSLGVFPLELPPIVFETE 615
Query: 877 AVWIQVPQSVKAVVE-QNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYF 935
VWI++P+ V+ +E + F G+HA HA + ++P+ V + +DL P +
Sbjct: 616 GVWIEIPEQVRDCIETRRLHFMGGIHALEHAAIGILPLLVMTDRNDLG-GISIPFHPQVG 674
Query: 936 PERILLYDRHPGGTGVSKQ 954
+ +YD PGG G+++Q
Sbjct: 675 MAAVFVYDGTPGGIGLARQ 693
>gi|345891966|ref|ZP_08842792.1| hypothetical protein HMPREF1022_01452 [Desulfovibrio sp.
6_1_46AFAA]
gi|345047745|gb|EGW51606.1| hypothetical protein HMPREF1022_01452 [Desulfovibrio sp.
6_1_46AFAA]
Length = 1044
Score = 362 bits (930), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 238/726 (32%), Positives = 369/726 (50%), Gaps = 77/726 (10%)
Query: 248 LKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMF 307
L+ G+ +LYSHQA + AG +VVVAT T+SGKSL YNLPVLE HD + ALY+F
Sbjct: 56 LEERGV-RLYSHQALATDHIRAGHSVVVATPTASGKSLIYNLPVLERHLHDPDARALYLF 114
Query: 308 PTKALAQDQLRALLAMTKAFD--ASIDIGVYDGDTTQKDRMWLR-DNARLLITNPDMLHM 364
P KALAQDQL A A+T + A +YDGDT+ R +R D +L++NP+MLH+
Sbjct: 115 PLKALAQDQLAAFTALTATWPEAARPTAALYDGDTSDHFRRKIRRDPPTVLVSNPEMLHL 174
Query: 365 SILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRR 424
ILP+H Q++ L+ L VV+DEAH Y+G FG H A + RR
Sbjct: 175 GILPHHEQWAAFLAGLT-------------------HVVVDEAHTYRGVFGAHMAQVFRR 215
Query: 425 LCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTS 484
L RL YG+ P++V TAT NP E L++ + D +P V+ P
Sbjct: 216 LNRLAGR-YGARPTYVLCTATVGNPGE-------LASGLIGAGDSAPV-----VVEEPGV 262
Query: 485 CLRSVLNKSQTDMDDTRNAA---------NKTSSPISEVSYLFAEMVQHGLRCIAFCRSR 535
+ + DT A N SP + L + LR I +CRSR
Sbjct: 263 MAETPRPADAPVVIDTSGAPQGPRHFVFLNPEQSPATAAIDLLKAALARNLRTIVYCRSR 322
Query: 536 KLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALEL 595
++ ELV + ++ P+ + I YRAG++ E+RR IE G+L V +T+ALEL
Sbjct: 323 RMTELVSLWAGS---QSGPY-KERISAYRAGFLPEERRSIEARMASGELLAVVSTSALEL 378
Query: 596 GIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFK 655
GID+G +DV + +G+PG++ + Q+ GR GR ++ S + VA E LDQYF + PE F
Sbjct: 379 GIDIGGLDVCILVGYPGTVMATLQRGGRVGRAQQESAVIVVAGEDALDQYFARNPEDFFS 438
Query: 656 SPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYF-GSGLSSGITTLKNRGYLSSDP 714
P E ++ N +L +HL CAA E PLS DE + +G + L+ + L
Sbjct: 439 RPPEKAVVNPDNEVILARHLECAAAELPLSA--DEPWLHPAGARRAVRELRKQSLLL--- 493
Query: 715 SLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAV 774
SA +++ K P + +R + Y + D Q+ V+ ++ +A+ + + GAV
Sbjct: 494 ---QSADGRQWLAARKRPQRLVDLRGT-GQSYSIED-QAGAVIGSVDGFRAWRETHPGAV 548
Query: 775 YMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKT 834
Y+H+G TY+++E++ ++A++ +FT+TR +T I ++
Sbjct: 549 YLHRGRTYVIEEVDPGRAAIRAKEANVSWFTRTR-----------GQKSTDILEETERLA 597
Query: 835 TAQALAC----TVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVV 890
+ L C +T G+ + + V L +P +E++ +W +P +V+A +
Sbjct: 598 IGRCLVCRGRLRITERITGYEKRATSGNRLLTIVPLDVPPQVFETEGLWYVIPDAVRAGL 657
Query: 891 EQNF-SFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGT 949
E+ F F +HA HAL+ ++P+ V + +D H P + +YD PGG
Sbjct: 658 EERFLHFMGSIHALEHALIGLLPLQVMADRNDFGGISIPLHPQTGLPC-VFVYDGLPGGA 716
Query: 950 GVSKQV 955
G+++Q
Sbjct: 717 GLTRQA 722
>gi|219852837|ref|YP_002467269.1| DEAD/DEAH box helicase [Methanosphaerula palustris E1-9c]
gi|219547096|gb|ACL17546.1| DEAD/DEAH box helicase domain protein [Methanosphaerula palustris
E1-9c]
Length = 753
Score = 362 bits (929), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 231/712 (32%), Positives = 371/712 (52%), Gaps = 76/712 (10%)
Query: 255 KLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQ 314
+LY+HQ +I G ++++ T T+SGK+L ++LPVLE L + +++AL+++PTKALA+
Sbjct: 54 RLYTHQCAAIEECRLGGSLILTTPTASGKTLGFSLPVLERLETEPAATALFLYPTKALAR 113
Query: 315 DQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFS 374
DQ+R LL + A I VYDGDT Q R +R+ +R++I NP LH +LP+H ++S
Sbjct: 114 DQMRVLLDLEAASGIRIGPAVYDGDTPQGMRPQIRNQSRIVIMNPYELH-QVLPWHYKWS 172
Query: 375 RILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYG 434
R L+ L+ F+VIDEAH Y+G FG AL+LRRL R+C Y
Sbjct: 173 RFLAGLQ-------------------FIVIDEAHRYRGVFGSSIALLLRRLERICRG-YR 212
Query: 435 SDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQ 494
P ++ STAT ANP E L LI+ +G+P ++ +L+NP
Sbjct: 213 RTPQYLLSTATLANPEEFGKMLTG-HPCRLIERNGAPQQKRHVILYNP------------ 259
Query: 495 TDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAP 554
+T S I+ + + V+H L+ + F +SRK E++ + +E L++
Sbjct: 260 -------YIPGETGSTITAAAEVMLTSVRHDLQTLCFAQSRKTAEVITTVAKEYLQQAGE 312
Query: 555 HLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSI 614
+ YRAGY+ +RR +E G+L G+ T+ALE+GID+G +D + G+PG++
Sbjct: 313 VDRYELAAYRAGYLPSERRDLENRLQQGQLHGLTTTSALEVGIDIGSLDAVVLCGYPGTM 372
Query: 615 ASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQH 674
+ WQQ GR+GRRE PS+A +A +GPLDQY+M +PE F +P E ID N ++
Sbjct: 373 IATWQQIGRAGRREVPSVATVIAQQGPLDQYYMHHPEAFFAAPHEQAIIDLGNPAIVSGQ 432
Query: 675 LVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSH 734
L+CAA E PL+ D+ FG L S +TT R L L + Y G ++ +
Sbjct: 433 LLCAAAELPLT-DGDQDLFGP-LFSPLTTALVRERL-----LAETESGLVYAGRQRA-TE 484
Query: 735 TISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIA 794
+ + + + + V+ VLE ++ +A+ + + GA+ +HQG T+ V + +
Sbjct: 485 AVKLDGLSGDIFRVV--AGGRVLETLDRHQAYREAFAGAILLHQGETFAVTAMEPENLDI 542
Query: 795 LCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLW 854
+ D++Y TK T+I AT + LT T + TV T+ G+
Sbjct: 543 TAEPVDVEYTTKPLHATEIT----AGTVATTTVRPGLTIETGEV---TVQETFTGYQ--I 593
Query: 855 RGSGIIFDTVELYLPKYSYESQAVWIQVPQS-VKAVVEQNFSFRSGLHAASHALLHVVPI 913
R G + T L LP +++++ V ++ + ++ + LH A HAL+ V+P+
Sbjct: 594 RQYGEVLATHHLGLPPLTFQTRGVSLKFSATLLQDLTVAGLDPAGALHGAEHALIAVMPV 653
Query: 914 YVRCNFSD-------LAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDM 958
++ C+ D +APE P I +YD PGG G++ +V +
Sbjct: 654 HLLCDRQDIGGVSMVMAPETGGP--------LICIYDGCPGGAGLTARVPSL 697
>gi|294625564|ref|ZP_06704190.1| helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122]
gi|292600129|gb|EFF44240.1| helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122]
Length = 831
Score = 362 bits (929), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 236/767 (30%), Positives = 377/767 (49%), Gaps = 102/767 (13%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
I R IPD + AL++ GIS+LYSHQA++ A+ G++V + T T+SGKSL
Sbjct: 49 IPGRDGRYAPIPDDVPGALADALRARGISQLYSHQADAWAATQRGEHVAIVTPTASGKSL 108
Query: 286 CYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDR 345
CY LPV+ A + + ALY+FPTKALAQDQ+ LL + +A + + +DGDT R
Sbjct: 109 CYTLPVVSA-AMTSGAKALYLFPTKALAQDQVAELLELNRAGELGVKAFTFDGDTPGDAR 167
Query: 346 MWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVID 405
+R + ++++NPDMLH +ILP+H ++++ NLR +VVID
Sbjct: 168 QAIRLHGDIVVSNPDMLHQAILPHHTKWAQFFENLR-------------------YVVID 208
Query: 406 EAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELI 465
E H Y+G FG H +LRRL R+C+ YG+ P F+ +AT NP H L + I
Sbjct: 209 EIHTYRGVFGSHVTNVLRRLKRICA-FYGATPQFILCSATIGNPHAHAQALIE-EQVHAI 266
Query: 466 QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHG 525
G+P K +LWNP V+N D+ R +A S+ I+ ++ ++ G
Sbjct: 267 TESGAPTGDKHVLLWNP-----PVVN---ADLG-LRASARSQSNRIARIA------IKSG 311
Query: 526 LRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLC 585
L+ + F ++R + E++ Y ++I + P I YR GY+ +RR +ER G +
Sbjct: 312 LKTLVFAQTRLMVEVLTKYLKDIFDHD-PRKPARIRAYRGGYLPTERREVERAMRAGTID 370
Query: 586 GVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQY 645
G+ +T+ALELG+D+G +DV + G+PGS+A+ WQ+ GR+GRR++P+L V VA PLDQY
Sbjct: 371 GIISTSALELGVDIGALDVVILNGYPGSVAATWQRFGRAGRRQQPALGVLVASSQPLDQY 430
Query: 646 FMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLK 705
+++P+ + E +L H+ CAA E P I DE FG I L
Sbjct: 431 VVRHPDFFADASPEHARTAPDQPLILFDHIRCAAFELP--FIADEP-FGP-----IDPLA 482
Query: 706 NRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN--EVLEEIEES 763
L+ + +E+I + P++ +S+R++ + V+D +++ E++ S
Sbjct: 483 FLEALAESEVIHQEGDRWEWIA-DSYPANAVSLRSVADGNFVVVDKSDGKQQIIAEVDYS 541
Query: 764 KAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYT--------DIHV 815
A +YEGA++M Q Y V+ L+ + A + + Y+T + DYT D V
Sbjct: 542 AAALTLYEGAIHMVQSTPYQVERLDWEGRKAYVTRTHVDYYTDSIDYTKLKVLDRFDGGV 601
Query: 816 SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYES 875
+G +++ ++ + + R + I + V LP +
Sbjct: 602 AGRGDSHHGEVH-------------VVRRVSGYKKIRYYTHENIGYGPVN--LPDQELHT 646
Query: 876 QAVWIQVPQSV--KAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSR 933
AVW Q+PQ+ KA + + G A++AL V + V + DL N +
Sbjct: 647 TAVWWQLPQATLGKAFASKQDAL-DGFLGAAYALHVVATVAVMADARDLQKAVGNGDGAW 705
Query: 934 Y---------------------------FPERILLYDRHPGGTGVSK 953
+ F + LYD PGG G+S+
Sbjct: 706 FAVADQTGRGQLRGAEEGDAATVELQQAFVPTVYLYDNFPGGVGLSE 752
>gi|448079969|ref|XP_004194510.1| Piso0_005009 [Millerozyma farinosa CBS 7064]
gi|359375932|emb|CCE86514.1| Piso0_005009 [Millerozyma farinosa CBS 7064]
Length = 1175
Score = 362 bits (929), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 262/807 (32%), Positives = 400/807 (49%), Gaps = 143/807 (17%)
Query: 254 SKLYSHQAESIMASL----AGKNVVVATMTSSGKSLCYNLPVLEALSHDLSS-------- 301
+ LYSHQ +++ A L ++V+V+T TSSGKSL Y +P+L + D++S
Sbjct: 310 TDLYSHQQKALSAILRRDGKKRHVIVSTPTSSGKSLIYQIPILNDILWDITSNKGPFARR 369
Query: 302 -SALYMFPTKALAQDQLRALLAMTKAFDAS----IDIGVYDGDTTQKDRMWLRDNARLLI 356
+A ++FPTKALAQDQ R L K A+ I + +DGDT Q DR +R + ++
Sbjct: 370 NTAFFIFPTKALAQDQKRHLEDFIKYIPATSKRKIIVNTFDGDTPQSDRKSIRCFSDIIF 429
Query: 357 TNPDMLHMSILP-------YHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHA 409
TNPD +H SILP ++ F L NL+ ++VIDE H
Sbjct: 430 TNPDAIHASILPNCMNDYEHNSGFKEFLRNLK-------------------YIVIDELHI 470
Query: 410 YKGAFGCHTALILRRLCRLCSHV--YGSDPS-----FVFSTATSANPREHCMELANLSTL 462
YKG FG + LI+ RL R+ S + G+ + + +AT NP H + NL
Sbjct: 471 YKGTFGLNVRLIMSRLMRVVSALRDIGTPDAEIPVQLISCSATIRNPVSHFRVICNLHKT 530
Query: 463 ELI---QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPIS------- 512
E + DGSP +K F+LWNP + K Q T +++ PIS
Sbjct: 531 EEVVHVDEDGSPSCKKEFILWNPPPLMN---KKGQIQTQLTSSSSLSKPMPISKIIPREN 587
Query: 513 ---EVSYLFAEMVQHG--LRCIAFCRSRKLCELVLSYTREILEETA---PHLVDS-ICVY 563
E + + +++ H +R IAFC RK+CELV+ R + E + PH S + Y
Sbjct: 588 IISECAKMIIQLLGHSSSVRLIAFCPIRKVCELVMKEIRSLASEESYRGPHFSHSEVMSY 647
Query: 564 RAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGR 623
R GY DRR IE+ F G+L + ATNALELGID+ ++DV + GFP S +L QQ GR
Sbjct: 648 RGGYAPSDRRLIEQKMFSGELRAIVATNALELGIDLANLDVIITCGFPMSKMNLHQQFGR 707
Query: 624 SGRRERPS--LAVYVAFEGPLDQYFMKYPEKLF-KSPIECCHID-----AQNHKVLEQHL 675
+GR S A+ + P+DQY++K P+ L KS E +D L+ HL
Sbjct: 708 AGRNPDSSGTAAILICGTTPIDQYYLKNPKDLLDKSNYEDLCVDGLLRPGSYEFFLKGHL 767
Query: 676 VCAALEHPLSLIYDEKYFGSGLSSGITTLKNR-----------GYLSSDPSLDSSAKIFE 724
CAA E P L D+ +F + S + L R GY + P +
Sbjct: 768 QCAAFELPFLLERDQHWFATDTSPSASELVARLCHEVLFKDANGYYRTGP---------D 818
Query: 725 YIGHEKMPSHTISIRAIESERYEVIDMQSNE--VLEEIEESKAFFQVYEGAVYMHQGHTY 782
Y+ P +SIR E Y V+D+ +N V+EEIEES+ F +YEGA+++HQG +Y
Sbjct: 819 YL---PWPPDCVSIRKTEEVTYAVVDITNNRNIVIEEIEESRTSFTLYEGAIFLHQGLSY 875
Query: 783 LVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQ----- 837
LVKE N + A ++ + + T RD+TD+ + + K + T+ +
Sbjct: 876 LVKEFNTDYRFAKVERVKVDWTTSQRDFTDV------DPIRIEYIKQLVHPTSGKPSDIP 929
Query: 838 ALACTVTTTW--FGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVV-EQNF 894
T+ TT FG++++ R + II + VE+ P +S+ WI +P ++ +++ E++
Sbjct: 930 VFYGTIETTIIVFGYFKVNRRNEII-EAVEVKNPPVIIKSKGFWIDIPSNIISLIKEKSL 988
Query: 895 SFRSGLHAASHALLHVVPIYV--------RCNF------SDLAPECPNP-------HDSR 933
S G+H+A HA+++++P++V F ++L EC P R
Sbjct: 989 SMAGGIHSAQHAIMNMLPLFVGYGATSDPNAKFTSSFGETELMSECKAPEKEFAHRQTKR 1048
Query: 934 YFPERILLYDRHPG--GTGVSKQVTDM 958
P RI+ +D G GTGV+++ D+
Sbjct: 1049 VRPARIIFHDSKGGLQGTGVAQKTFDL 1075
>gi|15843261|ref|NP_338298.1| DEAD/DEAH box helicase [Mycobacterium tuberculosis CDC1551]
gi|13883618|gb|AAK48112.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Mycobacterium
tuberculosis CDC1551]
Length = 771
Score = 362 bits (928), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 243/740 (32%), Positives = 375/740 (50%), Gaps = 62/740 (8%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
HV ++ + P+ + A GIS +SHQAE+ + AG++VV+ T +S
Sbjct: 25 HVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPWSHQAEAAELAYAGRHVVIGTGPAS 84
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIG--VYDGD 339
GKSL Y L VL AL+ D + ALY+ PTKAL D LRA A+ A D+ YDGD
Sbjct: 85 GKSLAYQLLVLNALATDSRARALYLSPTKALVHDXLRAAHALAAAVPRLADVAPTAYDGD 144
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
+ + R + R+ +R L +NP+M H+S+L H +++ +L NLR
Sbjct: 145 SPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAVLLRNLR------------------ 186
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
FV++DE H Y+G FG + A++LRRL RLC+ Y + P+ +F++AT+A+P +L
Sbjct: 187 -FVIVDECHYYRGVFGSNVAMVLRRLLRLCAR-YSAHPTVIFASATTASPGATAADLIGQ 244
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
+E + DGSP + LW P LRS D+ A + S+ +E + + A
Sbjct: 245 PVVE-VTEDGSPRGARTVALWEP--ALRS-------DVIGEHGAPVRRSA-GAEAARVMA 293
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDF 579
+++ G + + F RSR+ EL R L + AP L D++ YRAGY+AEDR + +
Sbjct: 294 DLIVEGAQTLTFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQAL 353
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFE 639
G+L G+A TNALELG+D+ +D + GFPG++AS WQQAGRSGRR + +L V +A +
Sbjct: 354 AEGQLRGLATTNALELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARD 413
Query: 640 GPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSS 699
PLD Y + +P L P+E ID N +L L+CAA E PL D + G
Sbjct: 414 DPLDTYLVHHPAALLDKPVERVVIDPVNPHLLGPQLLCAATELPLD---DAEVRSWGAVE 470
Query: 700 GITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEE 759
+L + G L + + F G + P + +R + +++ + +L
Sbjct: 471 VAESLVDDGLLRR-----RNGRYFPAPGVK--PHAAVDVRGAIGGQIVIVEAGTGRLLGS 523
Query: 760 IEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGN 819
+ +A + GAVY+HQG TY+V L+ IA D Y T R+ TDI V+G
Sbjct: 524 VGVGQAPAAAHPGAVYLHQGETYVVDSLDFQDGIAFVHAEDPGYATFAREVTDIAVTGTG 583
Query: 820 NAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVW 879
+ + TVT G+ R + SG + D VEL +P+++ + AV
Sbjct: 584 E-------RLVFGPVALGLVPVTVTNHVVGYLRR-QLSGEVLDFVELDMPEHTLPTTAVM 635
Query: 880 IQVPQS--VKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPE 937
+ V++ +E LHAA HA + ++P+ C+ D+ + PE
Sbjct: 636 YTITSDALVRSGIEAT-RIPGSLHAAEHAAIGLLPLVASCDRGDI-----GGMSTATGPE 689
Query: 938 ---RILLYDRHPGGTGVSKQ 954
+ +YD +PGG G +++
Sbjct: 690 GLPSVFVYDGYPGGAGFAER 709
>gi|190572200|ref|YP_001970045.1| helicase [Stenotrophomonas maltophilia K279a]
gi|190010122|emb|CAQ43730.1| putative helicase [Stenotrophomonas maltophilia K279a]
Length = 829
Score = 362 bits (928), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 237/766 (30%), Positives = 382/766 (49%), Gaps = 101/766 (13%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
I R+ IPD++ +ALK+ GI +LYSHQAE+ AS G++V + T T+SGKSL
Sbjct: 48 IPGREGRYAPIPDSVPPALAAALKARGIEQLYSHQAEAWEASQRGEHVAIVTPTASGKSL 107
Query: 286 CYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDR 345
CY LPV+ A D + ALY+FPTKALAQDQ+ LL + +A D + +DGDT R
Sbjct: 108 CYTLPVVSAAMQD-KAKALYLFPTKALAQDQVAELLELNRAGDLGVKAFTFDGDTPGDAR 166
Query: 346 MWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVID 405
+R + ++++NPDMLH +ILP+H ++++ NLR ++VID
Sbjct: 167 QAIRLHGDIVVSNPDMLHQAILPHHTKWAQFFENLR-------------------YIVID 207
Query: 406 EAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELI 465
E H Y+G FG H +LRRL R+C+ YG P F+ +AT NP+ H L + + I
Sbjct: 208 EVHTYRGVFGSHVTNVLRRLKRICA-FYGVQPQFILCSATIGNPQAHAEALIE-APVTAI 265
Query: 466 QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHG 525
G+P K +LWNP V+N D+ R +A S+ I+ ++ ++ G
Sbjct: 266 TESGAPSGPKQVLLWNP-----PVINP---DLG-LRASARSQSNRIARIA------IKSG 310
Query: 526 LRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLC 585
L+ + F ++R + E++ Y ++I + P I YR GY+ +RR ER G +
Sbjct: 311 LKTLVFAQTRLMVEVLTKYLKDIFDHD-PRKPPRIRAYRGGYLPTERRETERAMRAGNID 369
Query: 586 GVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQY 645
G+ +T+ALELG+D+G +DV + G+PGS+A+ WQ+ GR+GRR++P+L V VA PLDQY
Sbjct: 370 GIVSTSALELGVDIGSLDVVILNGYPGSVAATWQRFGRAGRRQQPALGVMVASSQPLDQY 429
Query: 646 FMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLK 705
+++P+ ++ E I +L H+ CAA E P + G G I
Sbjct: 430 VVRHPDFFAEASPEHARIAPDQPLILFDHIRCAAFELPFRV-------GDGFGP-IDPEV 481
Query: 706 NRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN--EVLEEIEES 763
L+ + + +E+I + P++ +S+RA+ + V+D +++ E++ S
Sbjct: 482 FLEALAETEVIHREGERWEWIA-DSYPANAVSLRAVADGNFVVVDRSDGRQQIIAEVDYS 540
Query: 764 KAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYT--------DIHV 815
A +YEGA++M Q Y V+ L+ + A + + Y+T + D+T D V
Sbjct: 541 AAALTLYEGAIHMVQSTPYQVETLDWEGRKAYVTRTHVDYYTDSIDFTKLKVLDRFDGGV 600
Query: 816 SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYES 875
+G +++ ++ + + A + R + I + V LP +
Sbjct: 601 AGRGDSHHGEV---HVVRRVAG----------YKKIRYYTHENIGYGPVN--LPDQELHT 645
Query: 876 QAVWIQVPQS--VKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSR 933
AVW Q+PQ+ ++A + + G A++AL V + V + DL N S
Sbjct: 646 TAVWWQLPQALLLRAFASKQDAL-DGFLGAAYALHIVATVAVMADARDLQKSVGNGDGSW 704
Query: 934 Y--------------------------FPERILLYDRHPGGTGVSK 953
+ F + LYD PGG G+S+
Sbjct: 705 FAIADQSGRGQLRGSEGDPGGVELLQEFVPTVYLYDNFPGGVGLSE 750
>gi|325918225|ref|ZP_08180371.1| helicase family protein with metal-binding cysteine cluster
[Xanthomonas vesicatoria ATCC 35937]
gi|325535566|gb|EGD07416.1| helicase family protein with metal-binding cysteine cluster
[Xanthomonas vesicatoria ATCC 35937]
Length = 831
Score = 362 bits (928), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 236/767 (30%), Positives = 379/767 (49%), Gaps = 102/767 (13%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
+ R+ IPD + AL + GIS+LYSHQA++ A+ G++V + T T+SGKSL
Sbjct: 49 LPGREGSYAPIPDDVPSALADALHARGISQLYSHQADAWAATQRGEHVAIVTPTASGKSL 108
Query: 286 CYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDR 345
CY LPV+ A + + ALY+FPTKALAQDQ+ LL + +A + + +DGDT R
Sbjct: 109 CYTLPVVSA-AMTSGAKALYLFPTKALAQDQVAELLELNRAGELGVKAFTFDGDTPGDAR 167
Query: 346 MWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVID 405
+R + ++++NPDMLH +ILP+H ++++ NLR +VVID
Sbjct: 168 QAIRLHGDIVVSNPDMLHQAILPHHTKWAQFFENLR-------------------YVVID 208
Query: 406 EAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELI 465
E H Y+G FG H +LRRL R+C+ YG+ P F+ +AT NP H L + I
Sbjct: 209 EIHTYRGVFGSHVTNVLRRLKRICA-FYGAHPQFILCSATIGNPHAHAQALIE-ERVHAI 266
Query: 466 QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHG 525
G+P K +LWNP V+N D+ R +A S+ I+ ++ ++ G
Sbjct: 267 TESGAPTGDKHVLLWNP-----PVVN---ADLG-LRASARSQSNRIARIA------IKSG 311
Query: 526 LRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLC 585
L+ + F ++R + E++ Y ++I + P I YR GY+ +RR +ER G +
Sbjct: 312 LKTLVFAQTRLMVEVLTKYLKDIFDHD-PRKPARIRAYRGGYLPTERREVERAMRAGTID 370
Query: 586 GVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQY 645
G+ +T+ALELG+D+G +DV + G+PGS+A+ WQ+ GR+GRR++P+L V VA PLDQY
Sbjct: 371 GIISTSALELGVDIGALDVVILNGYPGSVAATWQRFGRAGRRQQPALGVLVASSQPLDQY 430
Query: 646 FMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLK 705
+++P+ + E I +L H+ CAA E P I DE FG I L
Sbjct: 431 VVRHPDFFADASPEHARIAPDQPLILFDHIRCAAFELP--FIADEP-FGP-----IDPLV 482
Query: 706 NRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN--EVLEEIEES 763
L+ + +E+I + P++ +S+R++ + V+D + +++ E++ S
Sbjct: 483 FLEALAESDVIHQEGDRWEWIA-DSYPANAVSLRSVADGNFVVVDKTNGKQQIIAEVDYS 541
Query: 764 KAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYT--------DIHV 815
A +YEGA++M Q Y V+ L+ + A + + Y+T + DYT D V
Sbjct: 542 AAALTLYEGAIHMVQSTPYQVERLDWEGRKAYVTRTHVDYYTDSIDYTKLKVLDRFDGGV 601
Query: 816 SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYES 875
+G +++ ++ + + R + I + V LP +
Sbjct: 602 AGRGDSHHGEVH-------------VVRRVSGYKKIRYYTHENIGYGPVN--LPDQELHT 646
Query: 876 QAVWIQVPQSV--KAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSR 933
AVW Q+PQ+ KA + + G A++AL V + V + DL N +
Sbjct: 647 TAVWWQLPQATLGKAFASKQDAL-DGFLGAAYALHVVATVAVMADARDLQKAVGNGDGAW 705
Query: 934 Y---------------------------FPERILLYDRHPGGTGVSK 953
+ F + LYD PGG G+S+
Sbjct: 706 FAVADQTGRGQLRGVEEGENAAVELQQAFVPTVYLYDNFPGGVGLSE 752
>gi|325923075|ref|ZP_08184770.1| helicase family protein with metal-binding cysteine cluster
[Xanthomonas gardneri ATCC 19865]
gi|325546467|gb|EGD17626.1| helicase family protein with metal-binding cysteine cluster
[Xanthomonas gardneri ATCC 19865]
Length = 831
Score = 361 bits (927), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 235/767 (30%), Positives = 379/767 (49%), Gaps = 102/767 (13%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
+ R+ IPD + + AL + GI++LYSHQA++ AS G++V + T T+SGKSL
Sbjct: 49 LPGREGRYAPIPDDVPSALRDALHARGITQLYSHQADAWAASQRGEHVAIVTPTASGKSL 108
Query: 286 CYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDR 345
CY LPV+ A + + ALY+FPTKALAQDQ+ LL + +A + + +DGDT R
Sbjct: 109 CYTLPVVSA-AMTSGAKALYLFPTKALAQDQVAELLELNRAGELGVKAFTFDGDTPGDAR 167
Query: 346 MWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVID 405
+R + ++++NPDMLH +ILP+H ++++ NLR +VVID
Sbjct: 168 QAIRLHGDIVVSNPDMLHQAILPHHTKWAQFFENLR-------------------YVVID 208
Query: 406 EAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELI 465
E H Y+G FG H +LRRL R+C+ YG++P F+ +AT NP H L + I
Sbjct: 209 EIHTYRGVFGSHVTNVLRRLKRICA-FYGANPQFILCSATIGNPHAHAQALIE-EQVHAI 266
Query: 466 QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHG 525
G+P K +LWNP V+N D+ R +A S+ I+ ++ ++ G
Sbjct: 267 TESGAPTGDKHVLLWNP-----PVVN---ADLG-LRASARSQSNRIARIA------IKSG 311
Query: 526 LRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLC 585
L+ + F ++R + E++ Y ++I + P I YR GY+ +RR +ER G +
Sbjct: 312 LKTLVFAQTRLMVEVLTKYLKDIFDND-PRKPPRIRAYRGGYLPTERREVERAMRAGNID 370
Query: 586 GVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQY 645
G+ +T+ALELG+D+G +DV + G+PGS+A+ WQ+ GR+GRR++P+L V VA PLDQY
Sbjct: 371 GIVSTSALELGVDIGALDVVILNGYPGSVAATWQRFGRAGRRQQPALGVLVASSQPLDQY 430
Query: 646 FMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLK 705
+++P+ + E I +L H+ CAA E P I E FG I L
Sbjct: 431 VVRHPDFFADASPEHARIAPDQPLILFDHIRCAAFELP--FIASEP-FGP-----IDPLV 482
Query: 706 NRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN--EVLEEIEES 763
L+ + +E+I + P++ +S+R++ + V+D +++ E++ S
Sbjct: 483 FLEALAESEVIHQEGDRWEWIA-DSYPANAVSLRSVADGNFVVVDKTDGKQQIIAEVDYS 541
Query: 764 KAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYT--------DIHV 815
A +YEGA++M Q Y V+ L+ + A + + Y+T + DYT D V
Sbjct: 542 AAALTLYEGAIHMVQSTPYQVERLDWEGRKAYVTRTHVDYYTDSIDYTKLKVLDRFDGGV 601
Query: 816 SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYES 875
+G +++ ++ + + R + I + V LP +
Sbjct: 602 AGRGDSHHGEVH-------------VVRRVSGYKKIRYYTHENIGYGPVN--LPDQELHT 646
Query: 876 QAVWIQVPQSV--KAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSR 933
AVW Q+PQ+ KA + + G A++AL V + V + DL N +
Sbjct: 647 TAVWWQLPQATLGKAFASKQDAL-DGFLGAAYALHVVATVAVMADARDLQKAVGNGDGAW 705
Query: 934 Y---------------------------FPERILLYDRHPGGTGVSK 953
+ F + LYD PGG G+S+
Sbjct: 706 FAVADQTGRGQLRGVEEGEEGAVELQQAFVPTVYLYDNFPGGVGLSE 752
>gi|150017987|ref|YP_001310241.1| DEAD/DEAH box helicase [Clostridium beijerinckii NCIMB 8052]
gi|149904452|gb|ABR35285.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii
NCIMB 8052]
Length = 887
Score = 361 bits (927), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 241/758 (31%), Positives = 386/758 (50%), Gaps = 68/758 (8%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+++ + + R+A V+ P L + L GI KLYSHQAE ++ N+V+ T T
Sbjct: 7 IIYNKTMPKREAAYVDYPSNLSEELCEYLSQKGIDKLYSHQAEMFEKAMDRNNIVITTST 66
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDAS-IDIGVYDG 338
+SGK+L + LPV++ + + + A++++PTKALA DQ RA+L + F ++ I GVYDG
Sbjct: 67 ASGKTLSFLLPVIQEILSNPLARAIFIYPTKALASDQYRAILPYLEYFGSNRISAGVYDG 126
Query: 339 DTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLF 398
DT +R +R NA +++TNP+M++ + LP H +F F IF
Sbjct: 127 DTPVNERSRIRKNANIILTNPEMINAAFLPNHSKF----------GFDF-------IFSN 169
Query: 399 IRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELAN 458
++++VIDE H Y+GAFG H A + RRL R+C + Y S P ++ S+AT ANP E E+
Sbjct: 170 LKYIVIDELHTYRGAFGSHLANVFRRLGRVCRY-YNSSPQYLCSSATIANPVELAEEICG 228
Query: 459 LSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLF 518
LE+ DGSP +K + L P + D + S+ ++ + L
Sbjct: 229 HKFLEVCM-DGSPAPKKNYKLVQPPKIMGH----------DKKYYGQVQSTSVA--ADLI 275
Query: 519 AEMVQHGLRCIAFCRSRKLCELVLSYTREILEET---APHLVDSICVYRAGYVAEDRRRI 575
++V++ IAF +SR+ E+VL R+ LE L D I YR GY +R+ I
Sbjct: 276 PDLVENDNSFIAFAKSRRNVEVVLKEARDKLETENFFGASLKDKISGYRGGYTPLERKEI 335
Query: 576 ERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVY 635
E G L G+ +TNALELGID+G ID T+ +G+PG+ AS WQQ+GR+GR + S
Sbjct: 336 ENKMITGVLRGLVSTNALELGIDIGKIDTTVIVGYPGTRASFWQQSGRAGRNGKESTNYL 395
Query: 636 VAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGS 695
+ P DQY P+ LF+S E ID N + H+ AA E PL+L D+
Sbjct: 396 ILDNLPFDQYIAINPDWLFESGSENAVIDKNNLLIELAHIRAAAAEIPLTL--DDISIFP 453
Query: 696 GLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNE 755
L I L L+ + S K F + G+ P+ S+R I+ RY++I+ +N+
Sbjct: 454 DLGETIPVLIRASELT-----NQSGK-FAWCGN-SFPAGDFSLRNIDKARYKLINKDNNK 506
Query: 756 VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHV 815
+ E++E +AF +++ GA+YMH G Y V +L+L S+ A + Y+T T+I +
Sbjct: 507 EITEMDEMQAFREIHNGAIYMHDGVQYQVVKLDLESRTAFAIPFNGNYYTMPGGTTNIRI 566
Query: 816 SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYES 875
G +K + + TK T + + + + F+ +E L K Y++
Sbjct: 567 IQG-----SKDMEYERTKVTFGDVNVDEIVYMYKKLQFHNHQNLGFEQLEKPLSK-DYDT 620
Query: 876 QAVWIQVPQSVKAVVEQ--------NFSFRSGLHAASHALLHVVPIYVRCNFSDL----- 922
++ WI++P +V V + NF + +A+ + + D+
Sbjct: 621 ESTWIKIPDNVVTVYRRLLQESQNGNFIRNNHFEGICYAIKNAAMMATMTEQEDIGVVMS 680
Query: 923 --APECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDM 958
A E +DS + + +YD++ GG G S++V D+
Sbjct: 681 NNAIEISQNYDSEVY---MFIYDKYVGGLGYSEKVFDL 715
>gi|373251303|ref|ZP_09539421.1| ATP-dependent RNA helicase [Nesterenkonia sp. F]
Length = 807
Score = 361 bits (927), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 254/792 (32%), Positives = 391/792 (49%), Gaps = 93/792 (11%)
Query: 203 PLEMVEHLRKGIGSQ----GQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYS 258
PL+++ R G+ +Q G + HV + AR A P+ + D+ ++ + G+S LY+
Sbjct: 11 PLDLLR--RAGLSTQMDGSGPLRHVRTLPARTARTAAWPEWVPDDLRAGYRQVGVSALYT 68
Query: 259 HQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLR 318
HQ + + AG++V++AT T+SGKSL L L A+ ++ LY+ PTKALA DQL
Sbjct: 69 HQVRAAESLHAGRDVILATGTASGKSLGTQLAGLSAICRG-GATMLYLSPTKALAGDQLE 127
Query: 319 ALLAMTKAF-----DASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQF 373
AL + +A D+ I YDGDT ++R W+R +A +++TNPDML++ ILP H +
Sbjct: 128 ALSELAEATGPTGDDSGIRPAAYDGDTAVEERAWIRQHANVVLTNPDMLNVGILPNHRGW 187
Query: 374 SRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVY 433
+R + L V++DEAH+ +G FG H AL+LRRL R+ +H Y
Sbjct: 188 ARFFARLCC-------------------VIVDEAHSCRGIFGSHVALLLRRLRRVAAH-Y 227
Query: 434 GSDPSFVFSTATSANPREHCMELANLST-----------------------LELIQNDGS 470
G+ P F ++ATS +P L S + + DGS
Sbjct: 228 GAHPVFAGASATSGDPATSFARLIGRSAPAGDADGHADGEADAAGESDGIGVVSVTEDGS 287
Query: 471 PCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIA 530
P LW S + + D A S E + + +MV G R +A
Sbjct: 288 PHGPVDAYLWE------SSVAEQTGDA-----GAPARRSLTVEAADVLTDMVVSGRRTLA 336
Query: 531 FCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAAT 590
F +SR+ E + T E L + L + YR+GY+ E+RR +E G+L GVA+T
Sbjct: 337 FIKSRRGAETIARITGENLADVDRALTARVSAYRSGYLTEERRALEEALRTGRLHGVAST 396
Query: 591 NALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYP 650
ALELGID+ +DV + G+PG+ AS +QQ GR+GR + A ++A + PLD Y + +P
Sbjct: 397 PALELGIDISGLDVVIIAGWPGTRASFFQQLGRAGRDGQRGAAFFIAGDDPLDAYLLDHP 456
Query: 651 EKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGS-----GLSSGITTLK 705
E +F +E ID +N V HL+ AA E P L+ + GS GL + L
Sbjct: 457 EAIFDIAVEDAVIDPENPHVAAPHLLAAAQELP--LVPADASDGSPAPFAGLRWLVDALT 514
Query: 706 NRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKA 765
+G+L P + HE + +++R+ Y +ID + ++ +I +
Sbjct: 515 EQGHLRRRPR-------GWFFAHEASAAGWVALRSDGGGPYTIIDAEDGTLIGDIGSGQV 567
Query: 766 FFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATK 825
Q + GAVY+HQG TY+V+EL+ + + L A ++T+ R+ T I V G T
Sbjct: 568 QPQAHPGAVYVHQGRTYVVEELDQDASLVLVTPASPPFYTQARETTSIEVLG------TD 621
Query: 826 ISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQS 885
S D + A A VT+ GF R GS + L LP + +QAVWI P++
Sbjct: 622 TSAD-WGRFALHAGAVEVTSAVVGFQRKALGSSEVLSDEPLDLPPSTLRTQAVWITAPET 680
Query: 886 VKA---VVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLY 942
A V+ ++ LHAA HA++ ++P+ C+ D+ H P I +Y
Sbjct: 681 ALAEAGVIPEHIP--GALHAAEHAMIGLLPLIASCDRWDIGGVSTALHADTEQPT-IFVY 737
Query: 943 DRHPGGTGVSKQ 954
D HPGG G +++
Sbjct: 738 DGHPGGAGFAER 749
>gi|344205496|ref|YP_004790637.1| DEAD/DEAH box helicase [Stenotrophomonas maltophilia JV3]
gi|343776858|gb|AEM49411.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas maltophilia
JV3]
Length = 829
Score = 361 bits (927), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 238/768 (30%), Positives = 384/768 (50%), Gaps = 105/768 (13%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
I+ R+ IPD++ +ALK+ GI +LYSHQAE+ AS G++V + T T+SGKSL
Sbjct: 48 ITGREGRYAPIPDSVPPALAAALKARGIEQLYSHQAEAWEASQRGEHVAIVTPTASGKSL 107
Query: 286 CYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDR 345
CY LPV+ A D + ALY+FPTKALAQDQ+ LL + +A D + +DGDT R
Sbjct: 108 CYTLPVVSAAMQD-KAKALYLFPTKALAQDQVAELLELNRAGDLGVKAFTFDGDTPGDAR 166
Query: 346 MWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVID 405
+R + ++++NPDMLH +ILP+H ++++ NLR ++VID
Sbjct: 167 QAIRLHGDIVVSNPDMLHQAILPHHTKWAQFFENLR-------------------YIVID 207
Query: 406 EAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELI 465
E H Y+G FG H +LRRL R+C+ YG P F+ +AT NP+ H L + + I
Sbjct: 208 EVHTYRGVFGSHVTNVLRRLKRICA-FYGVQPQFILCSATIGNPQAHAEALIE-APVTAI 265
Query: 466 QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHG 525
G+P K +LWNP V+N D+ R +A S+ I+ ++ ++ G
Sbjct: 266 TESGAPSGPKQVLLWNP-----PVINP---DLG-LRASARSQSNRIARIA------IKSG 310
Query: 526 LRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLC 585
L+ + F ++R + E++ Y ++I + P I YR GY+ +RR ER G +
Sbjct: 311 LKTLVFAQTRLMVEVLTKYLKDIFDHD-PRKPPRIRAYRGGYLPTERRETERAMRAGTID 369
Query: 586 GVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQY 645
G+ +T+ALELG+D+G +DV + G+PGS+A+ WQ+ GR+GRR++P+L V VA PLDQY
Sbjct: 370 GIVSTSALELGVDIGSLDVVILNGYPGSVAATWQRFGRAGRRQQPALGVMVASSQPLDQY 429
Query: 646 FMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLK 705
+++P+ ++ E I +L H+ CAA E P + G G I
Sbjct: 430 VVRHPDFFAEASPEHARIAPDQPLILFDHIRCAAFELPFRV-------GDGFGP-IDPEV 481
Query: 706 NRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN--EVLEEIEES 763
L+ + + +E+I + P++ +S+RA+ + V+D +++ E++ S
Sbjct: 482 FLEALAETEVIHREGERWEWIA-DSYPANAVSLRAVADGNFVVVDRSDGRQQIIAEVDYS 540
Query: 764 KAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYT--------DIHV 815
A +YEGA++M Q Y V+ L+ + A + + Y+T + D+T D V
Sbjct: 541 AAALTLYEGAIHMVQSTPYQVETLDWDGRKAYVTRTHVDYYTDSIDFTKLKVLDRFDGGV 600
Query: 816 SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYES 875
+G +++ ++ + + A + R + I + V LP +
Sbjct: 601 AGRGDSHHGEV---HVVRRVAG----------YKKIRYYTHENIGYGPVN--LPDQELHT 645
Query: 876 QAVWIQVPQSVKAVVEQNFSFR----SGLHAASHALLHVVPIYVRCNFSDLAPECPNPHD 931
AVW Q+PQ A++ + F+ R G A++AL V + V + DL N
Sbjct: 646 TAVWWQLPQ---ALLLRAFASRQDALDGFLGAAYALHIVATVAVMADARDLQKSVGNGDG 702
Query: 932 SRY--------------------------FPERILLYDRHPGGTGVSK 953
+ + F + LYD PGG G+S+
Sbjct: 703 AWFAIADQSGRGQLRGSNGDPGAVELLQEFVPTVYLYDNFPGGVGLSE 750
>gi|456737399|gb|EMF62094.1| ATP-dependent RNA helicase [Stenotrophomonas maltophilia EPM1]
Length = 829
Score = 361 bits (927), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 237/766 (30%), Positives = 382/766 (49%), Gaps = 101/766 (13%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
I R+ IPD++ +ALK+ GI +LYSHQAE+ AS G++V + T T+SGKSL
Sbjct: 48 IPGREGRYAPIPDSVPPALAAALKARGIEQLYSHQAEAWEASQRGEHVAIVTPTASGKSL 107
Query: 286 CYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDR 345
CY LPV+ A D + ALY+FPTKALAQDQ+ LL + +A D + +DGDT R
Sbjct: 108 CYTLPVVSAAMQD-KAKALYLFPTKALAQDQVAELLELNRAGDLGVKAFTFDGDTPGDAR 166
Query: 346 MWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVID 405
+R + ++++NPDMLH +ILP+H ++++ NLR ++VID
Sbjct: 167 QAIRLHGDIVVSNPDMLHQAILPHHTKWAQFFENLR-------------------YIVID 207
Query: 406 EAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELI 465
E H Y+G FG H +LRRL R+C+ YG P F+ +AT NP+ H L + + I
Sbjct: 208 EVHTYRGVFGSHVTNVLRRLKRICA-FYGVQPQFILCSATIGNPQAHAEALIE-APVTAI 265
Query: 466 QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHG 525
G+P K +LWNP V+N D+ R +A S+ I+ ++ ++ G
Sbjct: 266 TESGAPSGPKQVLLWNP-----PVINP---DLG-LRASARSQSNRIARIA------IKSG 310
Query: 526 LRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLC 585
L+ + F ++R + E++ Y ++I + P I YR GY+ +RR ER G +
Sbjct: 311 LKTLVFAQTRLMVEVLTKYLKDIFDHD-PRKPPRIRAYRGGYLPTERRETERAMRAGNID 369
Query: 586 GVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQY 645
G+ +T+ALELG+D+G +DV + G+PGS+A+ WQ+ GR+GRR++P+L V VA PLDQY
Sbjct: 370 GIVSTSALELGVDIGSLDVVILNGYPGSVAATWQRFGRAGRRQQPALGVMVASSQPLDQY 429
Query: 646 FMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLK 705
+++P+ ++ E I +L H+ CAA E P + G G I
Sbjct: 430 VVRHPDFFAEASPEHARIAPDQPLILFDHIRCAAFELPFRV-------GDGFGP-IDPEV 481
Query: 706 NRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN--EVLEEIEES 763
L+ + + +E+I + P++ +S+RA+ + V+D +++ E++ S
Sbjct: 482 FLEALAETEVIHREGERWEWIA-DSYPANAVSLRAVADGNFVVVDRSDGRQQIIAEVDYS 540
Query: 764 KAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYT--------DIHV 815
A +YEGA++M Q Y V+ L+ + A + + Y+T + D+T D V
Sbjct: 541 AAALTLYEGAIHMVQSTPYQVETLDWDGRKAYVTRTHVDYYTDSIDFTKLKVLDRFDGGV 600
Query: 816 SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYES 875
+G +++ ++ + + A + R + I + V LP +
Sbjct: 601 AGRGDSHHGEV---HVVRRVAG----------YKKIRYYTHENIGYGPVN--LPDQELHT 645
Query: 876 QAVWIQVPQS--VKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSR 933
AVW Q+PQ+ ++A + + G A++AL V + V + DL N S
Sbjct: 646 TAVWWQLPQALLLRAFASKQDAL-DGFLGAAYALHIVATVAVMADARDLQKSVGNGDGSW 704
Query: 934 Y--------------------------FPERILLYDRHPGGTGVSK 953
+ F + LYD PGG G+S+
Sbjct: 705 FAIADQSGRGQLRGGEGDPGGVELLQEFVPTVYLYDNFPGGVGLSE 750
>gi|188989455|ref|YP_001901465.1| ATP-dependent helicase [Xanthomonas campestris pv. campestris str.
B100]
gi|167731215|emb|CAP49387.1| putative ATP-dependent helicase [Xanthomonas campestris pv.
campestris]
Length = 839
Score = 361 bits (926), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 238/767 (31%), Positives = 380/767 (49%), Gaps = 102/767 (13%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
I R+ IPD + AL++ GIS+LYSHQA++ AS G++V + T T+SGKSL
Sbjct: 57 IPGREGHYAPIPDDVPAALADALRARGISQLYSHQADAWAASQRGEHVAIVTPTASGKSL 116
Query: 286 CYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDR 345
CY LPV+ A + + ALY+FPTKALAQDQ+ LL + +A + + +DGDT R
Sbjct: 117 CYTLPVVSA-AMTAGAKALYLFPTKALAQDQVAELLELNRAGELGVKAFTFDGDTPGDAR 175
Query: 346 MWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVID 405
+R + ++++NPDMLH +ILP+H ++++ NLR +VVID
Sbjct: 176 QAIRLHGDIVVSNPDMLHQAILPHHTKWAQFFENLR-------------------YVVID 216
Query: 406 EAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELI 465
E H Y+G FG H +LRRL R+C+ YG++P F+ +AT NP H L + I
Sbjct: 217 EIHTYRGVFGSHVTNVLRRLKRICA-FYGANPQFILCSATIGNPHAHAQALIE-ERVHAI 274
Query: 466 QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHG 525
G+P K +LWNP V+N D+ R +A S+ I+ ++ ++ G
Sbjct: 275 TESGAPTGDKHVLLWNP-----PVVN---ADLG-LRASARSQSNRIARIA------IKSG 319
Query: 526 LRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLC 585
L+ + F ++R + E++ Y ++I + P I YR GY+ +RR +ER G +
Sbjct: 320 LKTLVFAQTRLMVEVLTKYLKDIFDHD-PRKPARIRAYRGGYLPTERREVERAMRAGTID 378
Query: 586 GVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQY 645
G+ +T+ALELG+D+G +DV + G+PGS+A+ WQ+ GR+GRR++P+L V VA PLDQY
Sbjct: 379 GIVSTSALELGVDIGALDVVILNGYPGSVAATWQRFGRAGRRQQPALGVLVASSQPLDQY 438
Query: 646 FMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLK 705
+++P+ + E I +L H+ CAA E P I DE FG I L
Sbjct: 439 VVRHPDFFADASPEHARIAPDQPLILFDHIRCAAFELP--FIADEP-FGP-----IDPLV 490
Query: 706 NRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN--EVLEEIEES 763
L+ + +E+I + P++ +S+R++ + V+D +++ E++ S
Sbjct: 491 FLEALAESEVIHQEGDRWEWIA-DSYPANAVSLRSVADGNFVVVDKTDGKQQIIAEVDYS 549
Query: 764 KAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYT--------DIHV 815
A +YEGA++M Q Y V+ L+ + A + + Y+T + DYT D V
Sbjct: 550 AAALTLYEGAIHMVQSTPYQVERLDWEGRKAYVTRTHVDYYTDSIDYTKLKVLDRFDGGV 609
Query: 816 SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYES 875
+G +++ ++ + + R + I + V LP +
Sbjct: 610 AGRGDSHHGEVH-------------VVRRVSGYKKIRYYTHENIGYGPVN--LPDQELHT 654
Query: 876 QAVWIQVPQSV--KAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSR 933
AVW Q+PQ+ KA + + G A++AL V + V + DL N +
Sbjct: 655 TAVWWQLPQATLGKAFASKQDAL-DGFLGAAYALHVVATVAVMADARDLQKAVGNGDGAW 713
Query: 934 Y---------------------------FPERILLYDRHPGGTGVSK 953
+ F + LYD PGG G+S+
Sbjct: 714 FAVADQTGRGQLRGVEEGEEGTVELQQAFVPTVYLYDNFPGGVGLSE 760
>gi|294666370|ref|ZP_06731617.1| helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535]
gi|292603867|gb|EFF47271.1| helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535]
Length = 831
Score = 361 bits (926), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 236/767 (30%), Positives = 377/767 (49%), Gaps = 102/767 (13%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
I R IPD + AL++ GIS+LYSHQA++ A+ G++V + T T+SGKSL
Sbjct: 49 IPGRDGRYAPIPDDVPGALADALRARGISQLYSHQADAWAATQRGEHVAIVTPTASGKSL 108
Query: 286 CYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDR 345
CY LPV+ A + + ALY+FPTKALAQDQ+ LL + +A + + +DGDT R
Sbjct: 109 CYTLPVVSA-AMTSGAKALYLFPTKALAQDQVAELLELNRAGELGVKAFTFDGDTPGDAR 167
Query: 346 MWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVID 405
+R + ++++NPDMLH +ILP+H ++++ NLR +VVID
Sbjct: 168 QAIRLHGDIVVSNPDMLHQAILPHHTKWAQFFENLR-------------------YVVID 208
Query: 406 EAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELI 465
E H Y+G FG H +LRRL R+C+ YG+ P F+ +AT NP H L + I
Sbjct: 209 EIHTYRGVFGSHVTNVLRRLKRICA-FYGATPQFILCSATIGNPHAHAQALIE-EQVHAI 266
Query: 466 QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHG 525
G+P K +LWNP V+N D+ R +A S+ I+ ++ ++ G
Sbjct: 267 TESGAPTGDKHVLLWNP-----PVVN---ADLG-LRASARSQSNRIARIA------IKSG 311
Query: 526 LRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLC 585
L+ + F ++R + E++ Y ++I + P I YR GY+ +RR +ER G +
Sbjct: 312 LKTLVFAQTRLMVEVLTKYLKDIFDHD-PRKPARIRAYRGGYLPTERREVERAMRAGTID 370
Query: 586 GVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQY 645
G+ +T+ALELG+D+G +DV + G+PGS+A+ WQ+ GR+GRR++P+L V VA PLDQY
Sbjct: 371 GIISTSALELGVDIGALDVVILNGYPGSVAATWQRFGRAGRRQQPALGVLVASSQPLDQY 430
Query: 646 FMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLK 705
+++P+ + E +L H+ CAA E P I DE FG I L
Sbjct: 431 VVRHPDFFADASPEHARTAPDQPLILFDHIRCAAFELP--FIADEP-FGP-----IDPLV 482
Query: 706 NRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN--EVLEEIEES 763
L+ + +E+I + P++ +S+R++ + V+D +++ E++ S
Sbjct: 483 FLEALAESEVIHQEGDRWEWIA-DSYPANAVSLRSVADGNFVVVDKSDGKQQIIAEVDYS 541
Query: 764 KAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYT--------DIHV 815
A +YEGA++M Q Y V+ L+ + A + + Y+T + DYT D V
Sbjct: 542 AAALTLYEGAIHMVQSTPYQVERLDWEGRKAYVTRTHVDYYTDSIDYTKLKVLDRFDGGV 601
Query: 816 SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYES 875
+G +++ ++ + + R + I + V LP +
Sbjct: 602 AGRGDSHHGEVH-------------VVRRVSGYKKIRYYTHENIGYGPVN--LPDQELHT 646
Query: 876 QAVWIQVPQSV--KAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSR 933
AVW Q+PQ+ KA + + G A++AL V + V + DL N +
Sbjct: 647 TAVWWQLPQATLGKAFASKQDAL-DGFLGAAYALHVVATVAVMADARDLQKAVGNGDGAW 705
Query: 934 Y---------------------------FPERILLYDRHPGGTGVSK 953
+ F + LYD PGG G+S+
Sbjct: 706 FAVADQTGRGQLRGAEEGDAATVELQQAFVPTVYLYDNFPGGVGLSE 752
>gi|389862396|ref|YP_006364636.1| DEAD/DEAH box helicase [Modestobacter marinus]
gi|388484599|emb|CCH86137.1| DEAD/DEAH box helicase [Modestobacter marinus]
Length = 839
Score = 360 bits (925), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 243/740 (32%), Positives = 367/740 (49%), Gaps = 60/740 (8%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+ HV + R++ P + + ++ L G+ + + HQ + + AG +VVVAT T
Sbjct: 41 VTHVHRLPVRRSRTAPWPAWVGEPLRTRLAERGVQEPFGHQVAAAELARAGSHVVVATGT 100
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGD 339
+SGKSL Y LP L AL+ D + LY+ PTKALA+DQL ++ A+ D S+ YDGD
Sbjct: 101 ASGKSLAYQLPALTALAEDPRACVLYLAPTKALARDQLASVEALA---DPSVRPAAYDGD 157
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T ++R W+R ++R ++TNPDMLH ILP H ++S S LR +A+
Sbjct: 158 TPMEERDWVRRHSRWIVTNPDMLHRGILPAHQRWS---STLRRVAY-------------- 200
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
VVIDE HAY+G FG H +LRRL YG++P FV ++AT A+P L
Sbjct: 201 --VVIDECHAYRGVFGSHVGHVLRRLR-RICRRYGAEPVFVLASATVADPAAAASRLVG- 256
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
+ + + +DGSP F LW P QT + A S ++ + L A
Sbjct: 257 APVAAVTDDGSPRPGATFALWEPPLT-------EQTG----EHGAPVRRSAAADAAGLLA 305
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETA-PHLVDSICVYRAGYVAEDRRRIERD 578
++V+ R +AF RSR+ E V R +L L + YR GY+ E+RR +ER
Sbjct: 306 DLVEQNARTLAFVRSRRGAESVAEQARAVLRSRGRADLASRVDSYRGGYLPEERRELERS 365
Query: 579 FFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAF 638
G L GVA TNALELGID+ +D + G+PG++AS+WQQAGR+GR + SL V+VA
Sbjct: 366 LSSGALLGVATTNALELGIDIAGLDAVVLAGYPGTLASMWQQAGRAGRAQNESLVVFVAR 425
Query: 639 EGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLS 698
+ PLD Y +P+ +F P+E D N VL L CAA E PL+ + G
Sbjct: 426 DDPLDHYLAHHPQAVFGRPVEATVTDPANPYVLGPQLCCAAAELPLTPADLADFGGDVAE 485
Query: 699 SGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLE 758
+ +T L G L + P+ Y P + IR + +I+ + +L
Sbjct: 486 AQVTELVADGLLRARPT-------GWYWAGRGRPD--VDIRGSGTAPVSIIEGATGRLLG 536
Query: 759 EIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGG 818
++ + V+ GA+Y+H+G TY+V E ++ A+ ++ T RD D+ +
Sbjct: 537 TVDGDASHATVHTGALYVHRGETYVVDEFDVDDACAVVHPESPEWTTVARDVVDLSI--- 593
Query: 819 NNAYATKISKD---QLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYES 875
+S D +L TA VT + R G+G + L LP +
Sbjct: 594 -------VSTDRTRRLGAVTAHTGVVDVTNQVVAYQRRRIGTGEVLAEFPLDLPARQLRT 646
Query: 876 QAVWIQVP-QSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRY 934
+AVW+ + ++V+ + LHAA HA + ++P+ C+ DL H
Sbjct: 647 RAVWLTLSDRAVERADVDETALPGSLHAAEHASIGILPLLATCDRWDLGGVSTALHPDTG 706
Query: 935 FPERILLYDRHPGGTGVSKQ 954
I++YD HPGG G +++
Sbjct: 707 A-ATIVVYDGHPGGAGFAER 725
>gi|406894779|gb|EKD39511.1| hypothetical protein ACD_75C00380G0003 [uncultured bacterium]
Length = 987
Score = 360 bits (924), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 233/723 (32%), Positives = 381/723 (52%), Gaps = 83/723 (11%)
Query: 245 KSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSAL 304
+ L +G+ +LY+HQ +++ + L G++V+VAT T+SGKS+ YNLPVL L D +L
Sbjct: 47 QECLNQSGVQRLYTHQCQAMESILKGRDVLVATPTASGKSMIYNLPVLNDLFEDSPGYSL 106
Query: 305 YMFPTKALAQDQLRALLAMTKAFDASID------IGVYDGDTTQKDRMWLRDNA-RLLIT 357
Y++P KALAQDQ L+ + A I ++DGDT+ R +RDN R++++
Sbjct: 107 YLYPLKALAQDQYNVLVNLFARLPADIQDKYRHFAALFDGDTSSYARRKIRDNPPRVILS 166
Query: 358 NPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCH 417
NP+MLH+S+LPYH + LR +VVIDE H+Y+G G H
Sbjct: 167 NPEMLHLSLLPYHQNWQSFFGGLR-------------------YVVIDEVHSYRGVLGSH 207
Query: 418 TALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLF 477
A ++RRL R+ +H YG+ P F+ +AT NP E L + +E+I + G+P A++
Sbjct: 208 MAWVIRRLVRIAAH-YGARPIFILLSATIGNPGELGRMLLD-RPVEVISDSGAPQAERNM 265
Query: 478 VLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKL 537
+ NP ++A T+S + E + V+ GLR I + +SRK+
Sbjct: 266 LFINPW------------------DSAAYTASQLLEAA------VKRGLRTIVYTQSRKM 301
Query: 538 CELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGI 597
EL+ +T L E A L YRAG++ E+RR IE+ F G+L GV +T+ALELGI
Sbjct: 302 TELINMWTAPKLGELATKL----SAYRAGFLPEERREIEKMLFSGQLLGVISTSALELGI 357
Query: 598 DVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSP 657
D+G +D+ + +G+PGSI + Q+ GR GR + S + + E LDQ+FMK PE F+
Sbjct: 358 DIGDLDLCILVGYPGSIMATRQRGGRVGRGRKSSATILIGQEDALDQHFMKQPEDFFRRS 417
Query: 658 IECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNR-GYLSSDPSL 716
E ++ N +++QHL C E PLS EK I+ + R LS +L
Sbjct: 418 PESAVLNPYNTSIMDQHLHCCGAELPLSA--SEKLL------EISLIGERVAALSLSGAL 469
Query: 717 DSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYM 776
+A ++ K P +S+R + +ID + E++ EI+ + + + GAVY+
Sbjct: 470 LQTASGDRWVSARKYPERHVSLRG-GGGQMAIIDKERGEIIGEIDTVRGLKECHPGAVYL 528
Query: 777 HQGHTYLVKELNLSSKIALCQKADLKYFTK--TRDYTDI-HVSGGNNAYATKISKDQLTK 833
H+ + ++V + +L + L ++ YFT+ T T+I V ++Y ++S ++
Sbjct: 529 HRSNIWVVDQFDLQAGEILVRRETPSYFTRPTTEKRTEILEVLATKSSYGARVSFGRV-- 586
Query: 834 TTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQ- 892
VT G+ + + + TV L LP+ + ES+ +W+ +P + A+ EQ
Sbjct: 587 --------KVTEKVTGYQKRNNHTQKLVTTVALDLPEQTIESEGLWLDIPPPLVALFEQE 638
Query: 893 NFSFRSGLHAASHALLHVVPIYVRCNFSDLAP-ECPNPHDSRYFPERILLYDRHPGGTGV 951
+ F +HA HA++ + P+ V C+ +D+ CP + I +YD +PGG G+
Sbjct: 639 KYHFMGAIHALEHAMIALFPLLVLCDRNDIGGISCPFHEQTE--KASIFIYDGYPGGVGL 696
Query: 952 SKQ 954
+++
Sbjct: 697 TRE 699
>gi|389793849|ref|ZP_10197010.1| Distinct helicase family with a unique C-terminal domain including
a metal-binding cysteine cluster [Rhodanobacter fulvus
Jip2]
gi|388433482|gb|EIL90448.1| Distinct helicase family with a unique C-terminal domain including
a metal-binding cysteine cluster [Rhodanobacter fulvus
Jip2]
Length = 806
Score = 360 bits (924), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 235/770 (30%), Positives = 376/770 (48%), Gaps = 109/770 (14%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
+ A+ +P L AL+S G+ +LYSHQAE+ A+ AG +V VAT T+SGKSL
Sbjct: 43 VPAQDGSYAPLPADLPPALAQALRSRGVDQLYSHQAEAWAATQAGAHVAVATPTASGKSL 102
Query: 286 CYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDR 345
CY LPV+ A + ALY+FPTKALAQDQ+ LL + +A + + +DGDT R
Sbjct: 103 CYTLPVISAAMQQ-HAKALYLFPTKALAQDQVAELLELNQAGELGVKAFTFDGDTPGDAR 161
Query: 346 MWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVID 405
+R + ++++NPDMLH +ILP+H ++++ NLR +VVID
Sbjct: 162 QAIRLHGDIVVSNPDMLHQAILPHHTKWAQFFENLR-------------------YVVID 202
Query: 406 EAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELI 465
E H Y+G FG H A ++RRL R+C+ YG P F+ +AT NP++H L + ++
Sbjct: 203 EVHTYRGVFGSHVANVIRRLKRVCA-FYGVTPQFILCSATIGNPQQHAEALIEDAVTAIV 261
Query: 466 QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHG 525
++ G+P +K +LWNP V+N D+ R +A ++ I+ ++ ++ G
Sbjct: 262 ES-GAPAGEKHVLLWNP-----PVINP---DLG-LRASARSQTNRIARLA------IKSG 305
Query: 526 LRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLC 585
L+ + F +SR + E++ Y +++ + P I YR GY+ ++RR ERD G +
Sbjct: 306 LKTLVFAQSRSMVEVLTKYLKDVFDHD-PRKPPRIRAYRGGYLPKERRAAERDMRAGSVD 364
Query: 586 GVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQY 645
G+ +T+ALELG+D+G +DV + G+PGS+A+ WQ+ GR+GRR++ +L V VA PLDQY
Sbjct: 365 GIVSTSALELGVDIGSLDVVVLNGYPGSVAATWQRFGRAGRRQQSALGVLVASSDPLDQY 424
Query: 646 FMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLK 705
+++PE + E I +L H+ CAA E P + DE + ++ + L
Sbjct: 425 LVRHPEFFQGATPEHARIQPDQPLILLDHIRCAAFELP--FVGDEMFGTEIVTPWLDVLG 482
Query: 706 NRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNE--VLEEIEES 763
G L + +E+I + P+ +S+R++ + V+D + ++ E++ S
Sbjct: 483 EEGVLHRE------GDRWEWIA-DSYPAIAVSLRSVADGNFVVVDRTNGRQTIIAEVDYS 535
Query: 764 KAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHV------SG 817
A +YEGA++M Q Y V+ L+ + A + + Y+T DYT + V +G
Sbjct: 536 AAPVTLYEGAIHMIQSVPYQVERLDWEGRKAYVTRTQVDYYTDAIDYTKLKVLDCFDSAG 595
Query: 818 GNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQA 877
A + + + R + I + V LP + A
Sbjct: 596 AGRGQAHHGEVHVVRRVPG-----------YKKIRFYTHENIGYGPVN--LPDQELHTTA 642
Query: 878 VWIQVPQSVKA-VVEQNFSFRSGLHAASHALLHVVPIYVRCNFSD--------------- 921
VW Q+ Q+V A + G A++AL V + V D
Sbjct: 643 VWWQLSQAVLASAFDDRQQALDGFLGAAYALHIVATVAVMAEARDLQKSVGSGDGAWFVS 702
Query: 922 ------------------LAPECPNPHDSRYFPERILLYDRHPGGTGVSK 953
LAP+ P F + LYD PGG G S+
Sbjct: 703 ADLSGRGQLRGSDGQPMALAPDAP-------FTPTVYLYDAFPGGIGQSE 745
>gi|319788495|ref|YP_004147970.1| DEAD/DEAH box helicase [Pseudoxanthomonas suwonensis 11-1]
gi|317467007|gb|ADV28739.1| DEAD/DEAH box helicase domain protein [Pseudoxanthomonas suwonensis
11-1]
Length = 801
Score = 360 bits (924), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 234/765 (30%), Positives = 370/765 (48%), Gaps = 105/765 (13%)
Query: 228 ARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCY 287
R+ +P L +AL++ G+ +LY+HQAE+ A AG NVV+AT T+SGKSLCY
Sbjct: 45 GREGRYAPLPQDLPPRLAAALRARGVEQLYAHQAEAWDAVTAGGNVVLATPTASGKSLCY 104
Query: 288 NLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMW 347
LPV+ A+ + ALY+FPTKAL+QDQ+ LL + +A D + +DGDT R
Sbjct: 105 TLPVVSAVM-TRKAKALYLFPTKALSQDQVAELLELNRAGDLGLKPATFDGDTPGDQRQA 163
Query: 348 LRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEA 407
+R N ++++NPDMLH ILP+H ++++ L +VVIDE
Sbjct: 164 IRLNGDIVVSNPDMLHQGILPHHTKWAQFFEGLE-------------------YVVIDEI 204
Query: 408 HAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQN 467
H Y+G FG H A +LRRL R+C+ YGS P F+ +AT NPR+H L + I
Sbjct: 205 HTYRGVFGSHLANVLRRLKRVCA-FYGSKPQFILCSATIGNPRDHAEALLE-DEVRAITE 262
Query: 468 DGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLR 527
G+P + +LWNP V+N R+ +N+ + ++ GL+
Sbjct: 263 SGAPSGDRHVLLWNP-----PVVNPDLGLRASARSQSNRIAR----------AALKAGLK 307
Query: 528 CIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGV 587
+ F +SR + E++ Y +++ + + P + YR GY+ +RR E+ G++ +
Sbjct: 308 TLVFAQSRTMVEVLTKYLKDVFD-SDPRKPARVRAYRGGYLPTERREAEQAMRAGRIDCI 366
Query: 588 AATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFM 647
+T+ALELG+D+G +D+ + G+PGS+A+ WQ+ GR+GRR++ SL V VA PLDQY +
Sbjct: 367 VSTSALELGVDIGSLDLVVLNGYPGSVAATWQRFGRAGRRQQASLGVMVASSDPLDQYMV 426
Query: 648 KYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNR 707
++PE +P E I +L H+ CAA E P + E++ + L
Sbjct: 427 RHPEFFSAAPPEHARIAPDQPVILLDHIRCAAFELP--FLQGERFGNVEPEVYLQLLAED 484
Query: 708 GYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNE--VLEEIEESKA 765
G + D +E+I + P++ +S+R++ + V+D ++ E++ S A
Sbjct: 485 GVVHPD------GGRWEWIA-DSYPANAVSLRSVADGNFVVVDRTDGRQVIIAEVDFSSA 537
Query: 766 FFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATK 825
+YEGA++M Q Y V+ L+ + A + + Y+T DYT + V
Sbjct: 538 PLMLYEGAIHMVQSVPYQVERLDWEGRKAYVTRTHVDYYTDAIDYTKLKV---------- 587
Query: 826 ISKDQLTKTTAQALAC-------TVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAV 878
++ A A C + + R + I + V LP + A+
Sbjct: 588 --LERFDGVIAGAGTCHHGEVHVVRRVSGYKKIRYYTHENIGYGPVN--LPDQELHTSAL 643
Query: 879 WIQVPQSVKAVVEQNFSFR----SGLHAASHALLHVVPIYVRCNFSDLAPEC-------- 926
W Q+PQ A +E F+ R G A +AL V + V +DL
Sbjct: 644 WWQLPQ---AELEARFASRQDALDGFLGAGYALHVVAKVAVMAESADLQKAVGSGDGAWF 700
Query: 927 ------------------PNPHDSRYFPERILLYDRHPGGTGVSK 953
P+ HDS F + LYD +PGG G S+
Sbjct: 701 ASGDGRGQLRALDGSMVDPDRHDS--FVPTVYLYDNYPGGMGQSE 743
>gi|194363858|ref|YP_002026468.1| DEAD/DEAH box helicase [Stenotrophomonas maltophilia R551-3]
gi|194346662|gb|ACF49785.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas maltophilia
R551-3]
Length = 829
Score = 360 bits (924), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 236/766 (30%), Positives = 382/766 (49%), Gaps = 101/766 (13%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
I R+ +PD++ +ALK+ GI +LYSHQAE+ AS G++V + T T+SGKSL
Sbjct: 48 IPGREGRYAPLPDSVPPALAAALKARGIEQLYSHQAEAWEASQRGEHVAIVTPTASGKSL 107
Query: 286 CYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDR 345
CY LPV+ A D + ALY+FPTKALAQDQ+ LL + +A D + +DGDT R
Sbjct: 108 CYTLPVVSAAMQD-KAKALYLFPTKALAQDQVAELLELNRAGDLGVKAFTFDGDTPGDAR 166
Query: 346 MWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVID 405
+R + ++++NPDMLH +ILP+H ++++ NLR ++VID
Sbjct: 167 QAIRLHGDIVVSNPDMLHQAILPHHTKWAQFFENLR-------------------YIVID 207
Query: 406 EAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELI 465
E H Y+G FG H +LRRL R+C+ YG P F+ +AT NP+ H L + + I
Sbjct: 208 EVHTYRGVFGSHVTNVLRRLKRICA-FYGVQPQFILCSATIGNPQAHAEALIE-APVTAI 265
Query: 466 QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHG 525
G+P K +LWNP V+N D+ R +A S+ I+ ++ ++ G
Sbjct: 266 TESGAPSGPKQVLLWNP-----PVINP---DLG-LRASARSQSNRIARIA------IKSG 310
Query: 526 LRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLC 585
L+ + F ++R + E++ Y ++I + P I YR GY+ +RR ER G +
Sbjct: 311 LKTLVFAQTRLMVEVLTKYLKDIFDHD-PRKPPRIRAYRGGYLPTERRETERAMRAGTID 369
Query: 586 GVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQY 645
G+ +T+ALELG+D+G +DV + G+PGS+A+ WQ+ GR+GRR++P+L V VA PLDQY
Sbjct: 370 GIVSTSALELGVDIGSLDVVILNGYPGSVAATWQRFGRAGRRQQPALGVMVASSQPLDQY 429
Query: 646 FMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLK 705
+++P+ ++ E I +L H+ CAA E P + G G I
Sbjct: 430 VVRHPDFFAEASPEHARIAPDQPLILFDHIRCAAFELPFRV-------GDGFGP-IDPEV 481
Query: 706 NRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN--EVLEEIEES 763
L+ + + +E+I + P++ +S+RA+ + V+D +++ E++ S
Sbjct: 482 FLEALAETEVIHREGERWEWIA-DSYPANAVSLRAVADGNFVVVDRSDGRQQIIAEVDYS 540
Query: 764 KAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYT--------DIHV 815
A +YEGA++M Q Y V+ L+ + A + + Y+T + D+T D V
Sbjct: 541 AAALTLYEGAIHMVQSTPYQVETLDWDGRKAYVTRTHVDYYTDSIDFTKLKVLDRFDGGV 600
Query: 816 SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYES 875
+G +++ ++ + + A + R + I + V LP +
Sbjct: 601 AGRGDSHHGEV---HVVRRVAG----------YKKIRYYTHENIGYGPVN--LPDQELHT 645
Query: 876 QAVWIQVPQS--VKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSR 933
AVW Q+PQ+ ++A + + G A++AL V + V + DL N S
Sbjct: 646 TAVWWQLPQALLLRAFASKQDAL-DGFLGAAYALHIVATVAVMADARDLQKSVGNGDGSW 704
Query: 934 Y--------------------------FPERILLYDRHPGGTGVSK 953
+ F + LYD PGG G+S+
Sbjct: 705 FAIADQSGRGQLRGSEGDPGVVELLQEFVPTVYLYDNFPGGVGLSE 750
>gi|212703982|ref|ZP_03312110.1| hypothetical protein DESPIG_02035, partial [Desulfovibrio piger
ATCC 29098]
gi|212672595|gb|EEB33078.1| DEAD/DEAH box helicase, partial [Desulfovibrio piger ATCC 29098]
Length = 780
Score = 360 bits (923), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 240/752 (31%), Positives = 374/752 (49%), Gaps = 87/752 (11%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATM 278
Q+ H AR AV E + L+ G+S LYSHQA + AG +VVVAT
Sbjct: 19 QVRHHRCEPARAAVYAESRLPWPAAIRRTLEERGLSGLYSHQALATDHIRAGYSVVVATP 78
Query: 279 TSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAF--DASIDIGVY 336
T+SGKSL YNLPVLE D + ALY+FP KALAQDQL L + + +A +Y
Sbjct: 79 TASGKSLIYNLPVLERHLRDSEARALYLFPLKALAQDQLAGLQRLVAGWPEEARPTAALY 138
Query: 337 DGDTTQKDRMWLR-DNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLI 395
DGDT+ R +R D +LI+NP+MLH+++LP+H Q++ L+ L
Sbjct: 139 DGDTSDHFRRKIRRDPPTVLISNPEMLHLALLPHHEQWAPFLAGLS-------------- 184
Query: 396 FLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCME 455
+V+DEAH Y+G FG H A + RRL RL +H YG+ PS+VF TAT NP E
Sbjct: 185 -----HIVVDEAHTYRGVFGAHMAGVFRRLNRLAAH-YGATPSYVFCTATVGNPGELAAS 238
Query: 456 LANLSTLE------LIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSS 509
L+ L L ++ G+P + +V +P S
Sbjct: 239 LSGLDLLPGRQPPVVVDQSGAPQGARHYVFLDPDQ------------------------S 274
Query: 510 PISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVA 569
P + L + LR I +CRSR++ ELV + + + P I YRAG++
Sbjct: 275 PATAAIDLLRAALARKLRTIVYCRSRRMTELVSLWAGSL---SGP-WAGRISAYRAGFLP 330
Query: 570 EDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRER 629
E+RR+IE G+L V +T+ALELGID+G +DV + +G+PG+I S Q+ GR GR ++
Sbjct: 331 EERRQIEARMASGELLAVVSTSALELGIDIGGLDVCILVGYPGTIMSTLQRGGRVGRAQQ 390
Query: 630 PSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYD 689
S V VA E LDQYFM +PE F P E ++ N +L +HL CAA E PLS D
Sbjct: 391 ESAVVLVAGEDALDQYFMSHPEDFFSRPAEKAVVNPWNEVILARHLECAAAELPLS-ARD 449
Query: 690 EKYFGSGLSSGITTLKNRG--YLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYE 747
+ + L +G LS+D S +++ K P + +R + R
Sbjct: 450 PWLAPAPAQEALRALAGQGRLLLSADGS--------QWLAARKRPQRLVDLRG--TGRSF 499
Query: 748 VIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKT 807
VI+ V+ ++ +A+ + + GAVY+H+G +Y+++E++ + ++A + +FT+
Sbjct: 500 VIEDSEGTVIGSVDGFRAWRETHVGAVYLHRGRSYVIEEMDPAEGRVRARQAKVDWFTRV 559
Query: 808 RDYTDIHVSGGNNAYATKISKDQLTKTTAQALAC----TVTTTWFGFYRLWRGSGIIFDT 863
R + +T I ++ + + + C + T G+ + +
Sbjct: 560 RGHK-----------STDILEELERRPLGRGVVCRGRLRIIDTITGYEKRSTRDNRLLTI 608
Query: 864 VELYLPKYSYESQAVWIQVPQSVKAVVEQNF-SFRSGLHAASHALLHVVPIYVRCNFSDL 922
V L P +E++ +W +P+S + +E++F F +HA H + ++P+ V + +D
Sbjct: 609 VPLEAPPQIFETEGLWYVIPESCRQRLEEDFVHFMGSIHACEHTAIGMLPLLVMADRNDF 668
Query: 923 APECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
P + + +YD PGG G+++Q
Sbjct: 669 G-GISIPLHPQTGLACVFIYDGLPGGAGLTRQ 699
>gi|346722992|ref|YP_004849661.1| Distinct helicase family with a unique C-terminal domain including
a metal-binding cysteine cluster [Xanthomonas axonopodis
pv. citrumelo F1]
gi|346647739|gb|AEO40363.1| Distinct helicase family with a unique C-terminal domain including
a metal-binding cysteine cluster [Xanthomonas axonopodis
pv. citrumelo F1]
Length = 831
Score = 359 bits (922), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 235/767 (30%), Positives = 377/767 (49%), Gaps = 102/767 (13%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
I R IP+ + AL++ GIS+LYSHQA++ A+ G++V + T T+SGKSL
Sbjct: 49 IPGRDGRYAPIPNDVPGALADALRARGISQLYSHQADAWAATQRGEHVAIVTPTASGKSL 108
Query: 286 CYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDR 345
CY LPV+ A + + ALY+FPTKALAQDQ+ LL + +A + + +DGDT R
Sbjct: 109 CYTLPVVSA-AMTSGAKALYLFPTKALAQDQVAELLELNRAGELGVKAFTFDGDTPGDAR 167
Query: 346 MWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVID 405
+R + ++++NPDMLH +ILP+H ++++ NLR +VVID
Sbjct: 168 QAIRLHGDIVVSNPDMLHQAILPHHTKWAQFFENLR-------------------YVVID 208
Query: 406 EAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELI 465
E H Y+G FG H +LRRL R+C+ YG+ P F+ +AT NP H L + I
Sbjct: 209 EIHTYRGVFGSHVTNVLRRLKRICA-FYGATPQFILCSATIGNPHAHAQALIE-EQVHAI 266
Query: 466 QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHG 525
G+P K +LWNP V+N D+ R +A S+ I+ ++ ++ G
Sbjct: 267 TESGAPTGDKHVLLWNP-----PVVN---ADLG-LRASARSQSNRIARIA------IKSG 311
Query: 526 LRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLC 585
L+ + F ++R + E++ Y ++I + P I YR GY+ +RR +ER G +
Sbjct: 312 LKTLVFAQTRLMVEVLTKYLKDIFDHD-PRKPARIRAYRGGYLPTERREVERAMRAGTID 370
Query: 586 GVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQY 645
G+ +T+ALELG+D+G +DV + G+PGS+A+ WQ+ GR+GRR++P+L V VA PLDQY
Sbjct: 371 GIISTSALELGVDIGALDVVILNGYPGSVAATWQRFGRAGRRQQPALGVLVASSQPLDQY 430
Query: 646 FMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLK 705
+++P+ + E +L H+ CAA E P I DE FG I L
Sbjct: 431 VVRHPDFFADASPEHARTAPDQPLILFDHIRCAAFELP--FIADEP-FGP-----IDPLV 482
Query: 706 NRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN--EVLEEIEES 763
L+ + +E+I + P++ +S+R++ + V+D +++ E++ S
Sbjct: 483 FLEALAESEVIHQEGDRWEWIA-DSYPANAVSLRSVADGNFVVVDKSDGKQQIIAEVDYS 541
Query: 764 KAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYT--------DIHV 815
A +YEGA++M Q Y V+ L+ + A + + Y+T + DYT D V
Sbjct: 542 AAALTLYEGAIHMVQSTPYQVERLDWEGRKAYVTRTHVDYYTDSIDYTKLKVLDRFDGGV 601
Query: 816 SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYES 875
+G +++ ++ + + R + I + V LP +
Sbjct: 602 AGRGDSHHGEVH-------------VVRRVSGYKKIRYYTHENIGYGPVN--LPDQELHT 646
Query: 876 QAVWIQVPQSV--KAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSR 933
AVW Q+PQ+ KA + + G A++AL V + V + DL N +
Sbjct: 647 TAVWWQLPQATLGKAFTSKQDAL-DGFLGAAYALHVVATVAVMADARDLQKAVGNGDGAW 705
Query: 934 Y---------------------------FPERILLYDRHPGGTGVSK 953
+ F + LYD PGG G+S+
Sbjct: 706 FAVADQTGRGQLRGVEEGDAATVELQQAFVPTVYLYDNFPGGVGLSE 752
>gi|365172355|ref|ZP_09361298.1| hypothetical protein HMPREF1006_02766 [Synergistes sp. 3_1_syn1]
gi|363617166|gb|EHL68571.1| hypothetical protein HMPREF1006_02766 [Synergistes sp. 3_1_syn1]
Length = 757
Score = 359 bits (921), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 238/749 (31%), Positives = 369/749 (49%), Gaps = 70/749 (9%)
Query: 218 GQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVAT 277
G+ ++ + AR A AL + +ALK G+ LYSHQ+ ++ +LAG + V+AT
Sbjct: 24 GKAPAIKKLPARPAAFGSF-GALDERIVNALKKRGVEALYSHQSAAVECALAGVDCVIAT 82
Query: 278 MTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYD 337
T+SGK+LCYNLPV+ A+ D S+ ALY+FPTKALAQDQL L + D I VYD
Sbjct: 83 PTASGKTLCYNLPVMHAILRDPSARALYLFPTKALAQDQLAELGELAAFADGGIHGFVYD 142
Query: 338 GDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFL 397
GDT R R ++ITNPDML+ ILP+H ++S NL
Sbjct: 143 GDTDPVKRRQARSEGHIVITNPDMLNSGILPHHTKWSDYFRNL----------------- 185
Query: 398 FIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELA 457
+++V+DE H Y+G FG H A + RL R+C YGS P+F+ +AT ANP EH L
Sbjct: 186 --KYIVVDELHTYRGVFGSHLANLFSRLARIC-EFYGSHPTFICCSATIANPDEHAQGLI 242
Query: 458 NLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYL 517
S ++LI G+P ++K +++NP + D + ++S + E S +
Sbjct: 243 GRS-VKLITESGAPASEKEIIIYNPP-------------VIDWKTGMRRSS--LFETSRI 286
Query: 518 FAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIER 577
+E + G+ I F RSR EL+L R L + + I YR GY+ ++RRRIE
Sbjct: 287 ASEALSSGISTIVFTRSRLNVELLLKSIRADLAKRGADPM-MIMGYRGGYLPKERRRIEH 345
Query: 578 DFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVA 637
D G L GV +TNALELGID+G + + + G+PGSIAS WQQ GR+GRR S AV VA
Sbjct: 346 DLRSGGLRGVVSTNALELGIDIGSLALAVLHGYPGSIASAWQQIGRAGRRGAISAAVMVA 405
Query: 638 FEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGL 697
PLDQ+ PE + +P E ID N + H+ C+A E P EK+ G +
Sbjct: 406 SADPLDQFLASRPEWFYGAPTERARIDPCNPYIQVSHVKCSAFELPFHA--GEKFGGQEV 463
Query: 698 SSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNE-- 755
+ + L + L D Y + P+ +S+R+ E Y + D+
Sbjct: 464 DAILDYLADHEVLHRVSEADEERY---YWQADSYPAAGLSLRSATGENYTITDITVETKP 520
Query: 756 -VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIH 814
V+ ++ A ++ A+Y H G +Y+V+ L+ ++ Y+T
Sbjct: 521 VVIGTMDRRSAPTLIFPDAIYFHGGKSYIVESLDTEKMQCFIREIAADYYTD-------- 572
Query: 815 VSGGNNAYATKISKDQLTKTTA--QALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYS 872
G+ + I+ D T+ + T+T T F +L F ++ LP+
Sbjct: 573 ---GDASLRINITDDFETEGNYGWGEVVVTLTPTIFKKIKLATHENAGFG--QISLPEEQ 627
Query: 873 YESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDL--APECPNPH 930
+ A W+ +P+ +++ + + H + + P+++ C+ +D+ +P
Sbjct: 628 MHTTACWLMMPR----CRQEDAELKLAMEGLEHLIRNTAPLFLMCDRADILVTSRLKDPQ 683
Query: 931 DSRYFPERILLYDRHPGGTGVSKQVTDMK 959
R I + D PGG G+++ ++K
Sbjct: 684 LRR---AAIYIIDNIPGGVGLAEGTFEIK 709
>gi|254524540|ref|ZP_05136595.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas sp. SKA14]
gi|219722131|gb|EED40656.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas sp. SKA14]
Length = 829
Score = 359 bits (921), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 237/766 (30%), Positives = 382/766 (49%), Gaps = 101/766 (13%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
I R+ IPDA+ +ALK+ GI +LYSHQAE+ AS G++V + T T+SGKSL
Sbjct: 48 IPGREGRYAPIPDAVPPALAAALKARGIEQLYSHQAEAWEASQRGEHVAIVTPTASGKSL 107
Query: 286 CYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDR 345
CY LPV+ A D + ALY+FPTKALAQDQ+ LL + +A D + +DGDT R
Sbjct: 108 CYTLPVVSAAMQD-KAKALYLFPTKALAQDQVAELLELNRAGDLGVKAFTFDGDTPGDAR 166
Query: 346 MWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVID 405
+R + ++++NPDMLH +ILP+H ++++ NLR ++VID
Sbjct: 167 QAIRLHGDIVVSNPDMLHQAILPHHTKWAQFFENLR-------------------YIVID 207
Query: 406 EAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELI 465
E H Y+G FG H +LRRL R+C+ YG P F+ +AT NP+ H L + + I
Sbjct: 208 EVHTYRGVFGSHVTNVLRRLKRICA-FYGVQPQFILCSATIGNPQAHAEALIE-APVTAI 265
Query: 466 QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHG 525
G+P K +LWNP V+N D+ R +A S+ I+ ++ ++ G
Sbjct: 266 TESGAPSGPKQVLLWNP-----PVINP---DLG-LRASARSQSNRIARIA------IKSG 310
Query: 526 LRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLC 585
L+ + F ++R + E++ Y ++I + P I YR GY+ +RR ER G +
Sbjct: 311 LKTLVFAQTRLMVEVLTKYLKDIFDHD-PRKPPRIRAYRGGYLPTERRETERAMRAGNID 369
Query: 586 GVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQY 645
G+ +T+ALELG+D+G +DV + G+PGS+A+ WQ+ GR+GRR++P+L V VA PLDQY
Sbjct: 370 GIVSTSALELGVDIGSLDVVILNGYPGSVAATWQRFGRAGRRQQPALGVMVASSQPLDQY 429
Query: 646 FMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLK 705
+++P+ ++ E I +L H+ CAA E P + G G I
Sbjct: 430 VVRHPDFFAEASPEHARIAPDQPLILFDHIRCAAFELPFRV-------GDGFGP-IDPEV 481
Query: 706 NRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN--EVLEEIEES 763
L+ + + +E+I + P++ +S+RA+ + V+D +++ E++ S
Sbjct: 482 FLEALAETEVIHREGERWEWIA-DSYPANAVSLRAVADGNFVVVDRSDGRQQIIAEVDYS 540
Query: 764 KAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYT--------DIHV 815
A +YEGA++M Q Y V+ L+ + A + + Y+T + D+T D V
Sbjct: 541 AAALTLYEGAIHMVQSTPYQVETLDWEGRKAYVTRTHVDYYTDSIDFTRLKVLDRFDGGV 600
Query: 816 SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYES 875
+G +++ ++ + + A + R + I + V LP +
Sbjct: 601 AGRGDSHHGEV---HVVRRVAG----------YKKIRYYTHENIGYGPVN--LPDQELHT 645
Query: 876 QAVWIQVPQS--VKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSR 933
AVW Q+PQ+ ++A + + G A++AL V + V + DL N +
Sbjct: 646 TAVWWQLPQALLLRAFASKQDAL-DGFLGAAYALHIVATVAVMADARDLQKSVGNGDGAW 704
Query: 934 Y--------------------------FPERILLYDRHPGGTGVSK 953
+ F + LYD PGG G+S+
Sbjct: 705 FAIADQSGRGQLRGSNGDPGSVELLQEFVPTVYLYDNFPGGVGLSE 750
>gi|386716540|ref|YP_006182866.1| ATP-dependent RNA helicase [Stenotrophomonas maltophilia D457]
gi|384076102|emb|CCH10677.1| ATP-dependent RNA helicase [Stenotrophomonas maltophilia D457]
Length = 829
Score = 359 bits (921), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 237/766 (30%), Positives = 382/766 (49%), Gaps = 101/766 (13%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
I R+ IPDA+ +ALK+ GI +LYSHQAE+ AS G++V + T T+SGKSL
Sbjct: 48 IPGREGRYAPIPDAVPPALAAALKARGIEQLYSHQAEAWEASQRGEHVAIVTPTASGKSL 107
Query: 286 CYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDR 345
CY LPV+ A D + ALY+FPTKALAQDQ+ LL + +A D + +DGDT R
Sbjct: 108 CYTLPVVSAAMQD-KAKALYLFPTKALAQDQVAELLELNRAGDLGVKAFTFDGDTPGDAR 166
Query: 346 MWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVID 405
+R + ++++NPDMLH +ILP+H ++++ NLR ++VID
Sbjct: 167 QAIRLHGDIVVSNPDMLHQAILPHHTKWAQFFENLR-------------------YIVID 207
Query: 406 EAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELI 465
E H Y+G FG H +LRRL R+C+ YG P F+ +AT NP+ H L + + I
Sbjct: 208 EVHTYRGVFGSHVTNVLRRLKRICA-FYGVQPQFILCSATIGNPQAHAEALIE-APVTAI 265
Query: 466 QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHG 525
G+P K +LWNP V+N D+ R +A S+ I+ ++ ++ G
Sbjct: 266 TESGAPSGPKQVLLWNP-----PVINP---DLG-LRASARSQSNRIARIA------IKSG 310
Query: 526 LRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLC 585
L+ + F ++R + E++ Y ++I + P I YR GY+ +RR ER G +
Sbjct: 311 LKTLVFAQTRLMVEVLTKYLKDIFDHD-PRKPPRIRAYRGGYLPTERRETERAMRAGNID 369
Query: 586 GVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQY 645
G+ +T+ALELG+D+G +DV + G+PGS+A+ WQ+ GR+GRR++P+L V VA PLDQY
Sbjct: 370 GIVSTSALELGVDIGSLDVVILNGYPGSVAATWQRFGRAGRRQQPALGVMVASSQPLDQY 429
Query: 646 FMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLK 705
+++P+ ++ E I +L H+ CAA E P + G G I
Sbjct: 430 VVRHPDFFAEASPEHARIAPDQPLILFDHIRCAAFELPFRV-------GDGFGP-IDPEV 481
Query: 706 NRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN--EVLEEIEES 763
L+ + + +E+I + P++ +S+RA+ + V+D +++ E++ S
Sbjct: 482 FLEALAETEVIHREGERWEWIA-DSYPANAVSLRAVADGNFVVVDRSDGRQQIIAEVDYS 540
Query: 764 KAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYT--------DIHV 815
A +YEGA++M Q Y V+ L+ + A + + Y+T + D+T D V
Sbjct: 541 AAALTLYEGAIHMVQSTPYQVETLDWDGRKAYVTRTHVDYYTDSIDFTKLKVLDRFDGGV 600
Query: 816 SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYES 875
+G +++ ++ + + A + R + I + V LP +
Sbjct: 601 AGRGDSHHGEV---HVVRRVAG----------YKKIRYYTHENIGYGPVN--LPDQELHT 645
Query: 876 QAVWIQVPQS--VKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSR 933
AVW Q+PQ+ ++A + + G A++AL V + V + DL N +
Sbjct: 646 TAVWWQLPQALLLRAFASKQDAL-DGFLGAAYALHIVATVAVMADARDLQKSVGNGDGAW 704
Query: 934 Y--------------------------FPERILLYDRHPGGTGVSK 953
+ F + LYD PGG G+S+
Sbjct: 705 FAIADQSGRGQLRGSEGDPGAVELLQEFVPTVYLYDNFPGGVGLSE 750
>gi|355571499|ref|ZP_09042751.1| DEAD/DEAH box helicase domain protein [Methanolinea tarda NOBI-1]
gi|354825887|gb|EHF10109.1| DEAD/DEAH box helicase domain protein [Methanolinea tarda NOBI-1]
Length = 754
Score = 359 bits (921), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 244/737 (33%), Positives = 371/737 (50%), Gaps = 64/737 (8%)
Query: 221 VHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTS 280
+H E+I R++ PD + +LYSHQ E++ A KNVV+ T T+
Sbjct: 22 IHAEEIPPRES-RYGTPDPPFPGQIQGFLDSRKIRLYSHQCEAVQAFREKKNVVMTTPTA 80
Query: 281 SGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDT 340
SGK+ + LPV EAL S+ L+++PTKAL +DQ + L A+ + F VYDGDT
Sbjct: 81 SGKTFAFALPVFEALLTQPGSTFLFLYPTKALTRDQHKTLRALEEGFCTGAVSAVYDGDT 140
Query: 341 TQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIR 400
R +R AR++++NP LH +IL +H Q+SR S L
Sbjct: 141 ATSARARIRQEARIVLSNPYELH-NILSWHHQWSRFFSGLSA------------------ 181
Query: 401 FVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLS 460
VVIDEAH Y+G FG H AL+LRRL R+C +GS P FV STAT AN + +L +
Sbjct: 182 -VVIDEAHRYRGVFGSHVALLLRRLRRVC-RFHGSHPLFVLSTATLANAGQFAEKLCGVP 239
Query: 461 TLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAE 520
E I DGSP + +NP + D R++A + A
Sbjct: 240 -FEQITRDGSPAGHRTIAFYNPC-------REWPADRSMHRDSA-----------LILAL 280
Query: 521 MVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHL-VDSICVYRAGYVAEDRRRIERDF 579
Q GL+ + F SR+ ELV S+ RE E H+ + I YRAGY+ E+RR IE
Sbjct: 281 CTQAGLQTLCFSGSRRTAELVASWAREFAAEPPRHVPAEKIASYRAGYLPEERRAIEEGL 340
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFE 639
G L GV +TNALELGIDVG +D + GFPG++ + WQQAGR+GR R +LA+ VA
Sbjct: 341 KSGALRGVVSTNALELGIDVGTLDAVVLSGFPGTMMAAWQQAGRAGRGARDALAILVASP 400
Query: 640 GPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSS 699
PLDQYFM++P F +P+E ID +N +L ++CAA E PL D F L
Sbjct: 401 NPLDQYFMRHPSAFFGAPLEHAIIDIENPYILSGQVLCAAAELPLDCEADRDLFPPALPE 460
Query: 700 GITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEE 759
+++L + L + + + Y G + + +S+ E + V M + VLE
Sbjct: 461 IVSSLAGQHLLG------RTRRGWIYAGSRRA-ADLVSLEGGSRETFTV--MCNGHVLET 511
Query: 760 IEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGN 819
++ ++A+ + ++GA+ +HQG Y V +L+L ++ + Y+T+ + + V
Sbjct: 512 LDRAQAYREAHKGAILLHQGEQYRVDDLDLDARTVRVTPVTVDYYTRPQKSAAVRV---- 567
Query: 820 NAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVW 879
K +D L+ VT + + + R + I + ++ LP + ++ +W
Sbjct: 568 --LEVKACRD-LSGARLFFGDVEVTEQYTAYKMIERETVIGVEPLD--LPPSRFATRGLW 622
Query: 880 IQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAP-ECPNPHDSRYFPE 937
++ P + AV GLH HAL+ V+P +V C+ D+ P +S Y
Sbjct: 623 FELAPGTCDAVTRAGGDLAGGLHGMEHALIAVMPFFVLCDRWDIGGLSVPCGGESGY--P 680
Query: 938 RILLYDRHPGGTGVSKQ 954
+ +YD + GG G++++
Sbjct: 681 AVYIYDGYEGGIGLAEK 697
>gi|384425755|ref|YP_005635112.1| hypothetical protein XCR_0064 [Xanthomonas campestris pv. raphani
756C]
gi|341934855|gb|AEL04994.1| YprA [Xanthomonas campestris pv. raphani 756C]
Length = 831
Score = 359 bits (921), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 237/767 (30%), Positives = 380/767 (49%), Gaps = 102/767 (13%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
I R+ IPD + AL++ GIS+LYSHQA++ A+ G++V + T T+SGKSL
Sbjct: 49 IPGREGHYAPIPDDVPAALADALRARGISQLYSHQADAWAATQRGEHVAIVTPTASGKSL 108
Query: 286 CYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDR 345
CY LPV+ A + + ALY+FPTKALAQDQ+ LL + +A + + +DGDT R
Sbjct: 109 CYTLPVVSA-AMTAGAKALYLFPTKALAQDQVAELLELNRAGELGVKAFTFDGDTPGDAR 167
Query: 346 MWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVID 405
+R + ++++NPDMLH +ILP+H ++++ NLR +VVID
Sbjct: 168 QAIRLHGDIVVSNPDMLHQAILPHHTKWAQFFENLR-------------------YVVID 208
Query: 406 EAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELI 465
E H Y+G FG H +LRRL R+C+ YG++P F+ +AT NP H L + I
Sbjct: 209 EIHTYRGVFGSHVTNVLRRLKRICA-FYGANPQFILCSATIGNPHAHAQALIE-ERVHAI 266
Query: 466 QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHG 525
G+P K +LWNP V+N D+ R +A S+ I+ ++ ++ G
Sbjct: 267 TESGAPTGDKHVLLWNP-----PVVN---ADLG-LRASARSQSNRIARIA------IKSG 311
Query: 526 LRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLC 585
L+ + F ++R + E++ Y ++I + P I YR GY+ +RR +ER G +
Sbjct: 312 LKTLVFAQTRLMVEVLTKYLKDIFDHD-PRKPARIRAYRGGYLPTERREVERAMRAGTID 370
Query: 586 GVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQY 645
G+ +T+ALELG+D+G +DV + G+PGS+A+ WQ+ GR+GRR++P+L V VA PLDQY
Sbjct: 371 GIVSTSALELGVDIGALDVVILNGYPGSVAATWQRFGRAGRRQQPALGVLVASSQPLDQY 430
Query: 646 FMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLK 705
+++P+ + E I +L H+ CAA E P I DE FG I L
Sbjct: 431 VVRHPDFFADASPEHARIAPDQPLILFDHIRCAAFELP--FIADEP-FGP-----IDPLV 482
Query: 706 NRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN--EVLEEIEES 763
L+ + +E+I + P++ +S+R++ + V+D +++ E++ S
Sbjct: 483 FLEALAESEVIHQEGDRWEWIA-DSYPANAVSLRSVADGNFVVVDKTDGKQQIIAEVDYS 541
Query: 764 KAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYT--------DIHV 815
A +YEGA++M Q Y V+ L+ + A + + Y+T + DYT D V
Sbjct: 542 AAALTLYEGAIHMVQSTPYQVERLDWEGRKAYVTRTHVDYYTDSIDYTKLKVLDRFDGGV 601
Query: 816 SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYES 875
+G +++ ++ + + R + I + V LP +
Sbjct: 602 AGRGDSHHGEVH-------------VVRRVSGYKKIRYYTHENIGYGPVN--LPDQELHT 646
Query: 876 QAVWIQVPQSV--KAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSR 933
AVW Q+PQ+ KA + + G A++AL V + V + DL N +
Sbjct: 647 TAVWWQLPQATLGKAFASKQDAL-DGFLGAAYALHVVATVAVMADARDLQKAVGNGDGAW 705
Query: 934 Y---------------------------FPERILLYDRHPGGTGVSK 953
+ F + LYD PGG G+S+
Sbjct: 706 FAVADQTGRGQLRGVDEGEEGAVELQQAFVPTVYLYDNFPGGVGLSE 752
>gi|408825409|ref|ZP_11210299.1| DEAD/DEAH box helicase [Pseudomonas geniculata N1]
Length = 829
Score = 359 bits (921), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 236/766 (30%), Positives = 382/766 (49%), Gaps = 101/766 (13%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
I R+ IP ++ +ALK+ GI +LYSHQAE+ AS G++V + T T+SGKSL
Sbjct: 48 IPGREGRYAPIPASVPPALAAALKARGIEQLYSHQAEAWEASQRGEHVAIVTPTASGKSL 107
Query: 286 CYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDR 345
CY LPV+ A D + ALY+FPTKALAQDQ+ LL + +A D + +DGDT R
Sbjct: 108 CYTLPVVSAAMQD-KAKALYLFPTKALAQDQVAELLELNRAGDLGVKAFTFDGDTPGDAR 166
Query: 346 MWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVID 405
+R + ++++NPDMLH +ILP+H ++++ NLR ++VID
Sbjct: 167 QAIRLHGDIVVSNPDMLHQAILPHHTKWAQFFENLR-------------------YIVID 207
Query: 406 EAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELI 465
E H Y+G FG H + +LRRL R+C+ YG P F+ +AT NP+ H L + + I
Sbjct: 208 EVHTYRGVFGSHVSNVLRRLKRICA-FYGVQPQFILCSATIGNPQAHAEALIE-APVTAI 265
Query: 466 QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHG 525
G+P K +LWNP V+N D+ R +A S+ I+ ++ ++ G
Sbjct: 266 TESGAPSGPKQVLLWNP-----PVINP---DLG-LRASARSQSNRIARIA------IKSG 310
Query: 526 LRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLC 585
L+ + F ++R + E++ Y ++I + P I YR GY+ +RR ER G +
Sbjct: 311 LKTLVFAQTRLMVEVLTKYLKDIFDHD-PRKPPRIRAYRGGYLPTERRETERAMRAGNID 369
Query: 586 GVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQY 645
G+ +T+ALELG+D+G +DV + G+PGS+A+ WQ+ GR+GRR++P+L V VA PLDQY
Sbjct: 370 GIVSTSALELGVDIGSLDVVILNGYPGSVAATWQRFGRAGRRQQPALGVMVASSQPLDQY 429
Query: 646 FMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLK 705
+++P+ ++ E I +L H+ CAA E P + G G I
Sbjct: 430 VVRHPDFFAEASPEHARIAPDQPLILFDHIRCAAFELPFRV-------GDGFGP-IDPEV 481
Query: 706 NRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN--EVLEEIEES 763
L+ + + +E+I + P++ +S+RA+ + V+D +++ E++ S
Sbjct: 482 FLEALAETEVIHREGERWEWIA-DSYPANAVSLRAVADGNFVVVDRSDGRQQIIAEVDYS 540
Query: 764 KAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYT--------DIHV 815
A +YEGA++M Q Y V+ L+ + A + + Y+T + D+T D V
Sbjct: 541 AAALTLYEGAIHMVQSTPYQVETLDWDGRKAYVTRTHVDYYTDSIDFTKLKVLDRFDGGV 600
Query: 816 SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYES 875
+G +++ ++ + + A + R + I + V LP +
Sbjct: 601 AGRGDSHHGEV---HVVRRVAG----------YKKIRYYTHENIGYGPVN--LPDQELHT 645
Query: 876 QAVWIQVPQS--VKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSR 933
AVW Q+PQ+ ++A + + G A++AL V + V + DL N S
Sbjct: 646 TAVWWQLPQALLLRAFASKQDAL-DGFLGAAYALHIVATVAVMADARDLQKSVGNGDGSW 704
Query: 934 Y--------------------------FPERILLYDRHPGGTGVSK 953
+ F + LYD PGG G+S+
Sbjct: 705 FAIADQSGRGQLRGSEGDPGVVELLQEFVPTVYLYDNFPGGVGLSE 750
>gi|424666487|ref|ZP_18103514.1| hypothetical protein A1OC_00041 [Stenotrophomonas maltophilia
Ab55555]
gi|401072342|gb|EJP80849.1| hypothetical protein A1OC_00041 [Stenotrophomonas maltophilia
Ab55555]
Length = 829
Score = 358 bits (920), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 236/766 (30%), Positives = 381/766 (49%), Gaps = 101/766 (13%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
I R+ IP ++ +ALK+ GI +LYSHQAE+ AS G++V + T T+SGKSL
Sbjct: 48 IPGREGRYAPIPGSVPPALAAALKARGIEQLYSHQAEAWEASQRGEHVAIVTPTASGKSL 107
Query: 286 CYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDR 345
CY LPV+ A D + ALY+FPTKALAQDQ+ LL + +A D + +DGDT R
Sbjct: 108 CYTLPVVSAAMQD-KAKALYLFPTKALAQDQVAELLELNRAGDLGVKAFTFDGDTPGDAR 166
Query: 346 MWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVID 405
+R + ++++NPDMLH +ILP+H ++++ NLR ++VID
Sbjct: 167 QAIRLHGDIVVSNPDMLHQAILPHHTKWAQFFENLR-------------------YIVID 207
Query: 406 EAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELI 465
E H Y+G FG H +LRRL R+C+ YG P F+ +AT NP+ H L + + I
Sbjct: 208 EVHTYRGVFGSHVTNVLRRLKRICA-FYGVQPQFILCSATIGNPQAHAEALIE-APVTAI 265
Query: 466 QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHG 525
G+P K +LWNP V+N D+ R +A S+ I+ ++ ++ G
Sbjct: 266 TESGAPSGPKQVLLWNP-----PVINP---DLG-LRASARSQSNRIARIA------IKSG 310
Query: 526 LRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLC 585
L+ + F ++R + E++ Y ++I + P I YR GY+ +RR ER G +
Sbjct: 311 LKTLVFAQTRLMVEVLTKYLKDIFDHD-PRKPPRIRAYRGGYLPTERRETERAMRAGNID 369
Query: 586 GVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQY 645
G+ +T+ALELG+D+G +DV + G+PGS+A+ WQ+ GR+GRR++P+L V VA PLDQY
Sbjct: 370 GIVSTSALELGVDIGSLDVVILNGYPGSVAATWQRFGRAGRRQQPALGVMVASSQPLDQY 429
Query: 646 FMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLK 705
+++P+ ++ E I +L H+ CAA E P + G G I
Sbjct: 430 VVRHPDFFAEASPEHARIAPDQPLILFDHIRCAAFELPFRV-------GDGFGP-IDPEV 481
Query: 706 NRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN--EVLEEIEES 763
L+ + + +E+I + P++ +S+RA+ + V+D +++ E++ S
Sbjct: 482 FLEALAETEVIHREGERWEWIA-DSYPANAVSLRAVADGNFVVVDRSDGRQQIIAEVDYS 540
Query: 764 KAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYT--------DIHV 815
A +YEGA++M Q Y V+ L+ + A + + Y+T + D+T D V
Sbjct: 541 AAALTLYEGAIHMVQSTPYQVETLDWEGRKAYVTRTHVDYYTDSIDFTKLKVLDRFDGGV 600
Query: 816 SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYES 875
+G +++ ++ + + A + R + I + V LP +
Sbjct: 601 AGRGDSHHGEV---HVVRRVAG----------YKKIRYYTHENIGYGPVN--LPDQELHT 645
Query: 876 QAVWIQVPQS--VKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSR 933
AVW Q+PQ+ ++A + + G A++AL V + V + DL N S
Sbjct: 646 TAVWWQLPQALLLRAFASKQDAL-DGFLGAAYALHIVATVAVMADARDLQKSVGNGDGSW 704
Query: 934 Y--------------------------FPERILLYDRHPGGTGVSK 953
+ F + LYD PGG G+S+
Sbjct: 705 FAIADQSGRGQLRGSEGDPGGVELLQEFVPTVYLYDNFPGGVGLSE 750
>gi|298247681|ref|ZP_06971486.1| Protein of unknown function DUF1998 [Ktedonobacter racemifer DSM
44963]
gi|297550340|gb|EFH84206.1| Protein of unknown function DUF1998 [Ktedonobacter racemifer DSM
44963]
Length = 757
Score = 358 bits (920), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 231/713 (32%), Positives = 359/713 (50%), Gaps = 70/713 (9%)
Query: 247 ALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYM 306
AL GI++LY+HQ E++ +L G++V +AT T+SGK+ LP ++ L +
Sbjct: 52 ALLPPGITQLYTHQHEALTRALDGEHVTIATATASGKTYAMALPSRVRRHRQQGATLLCI 111
Query: 307 FPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSI 366
PT+AL Q L +A+DA + + VY GDT Q +R +R A+ +IT PDMLHM +
Sbjct: 112 APTRALIQQWQERL----QAWDADLRVDVYTGDTPQTERAAIRTRAQAVITTPDMLHMGL 167
Query: 367 LPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLC 426
LPYH +S LS L+ V++DE+H Y+G FG H ALILRRL
Sbjct: 168 LPYHRSWSSFLSRLQ-------------------DVIVDESHMYRGVFGSHVALILRRLK 208
Query: 427 RLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCL 486
R+ + ++ P+F+F +AT NP +H ++L + +N G+P +L +LW P
Sbjct: 209 RVLA-LHDVQPTFIFGSATIGNPEDHAIQLIGQDVSAITEN-GAPSGGRLTLLWQPPDA- 265
Query: 487 RSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTR 546
S I E + L A + G+R I F ++R+ E ++ YTR
Sbjct: 266 ---------------------QSYIEEAAGLLAFFITQGVRSILFGQARQTVERMVRYTR 304
Query: 547 EILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTL 606
L +L + YRAGY E RR IER G++ G+ +T+ALE+GIDVG +DV++
Sbjct: 305 NKLPS---YLQSKVLAYRAGYTPEQRREIERQLAQGEILGIISTSALEVGIDVGDLDVSI 361
Query: 607 HLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQ 666
GFPGSI+S WQQAGR+GRR R +L+++V E LDQYF P L P E ++
Sbjct: 362 VAGFPGSISSFWQQAGRAGRRNRSALSIFVLREDALDQYFAANPSMLLDQPAERALVNIN 421
Query: 667 NHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYI 726
N + QHL+CAA E PLSL D++ FG+ + TL+ L ++ L +
Sbjct: 422 NPYIFPQHLLCAAFEQPLSLA-DQRLFGAATAH---TLEQ---LVAEKRLVRRGDYYHLR 474
Query: 727 GHEKMPSHTISIRAIESERYEVIDMQSN---EVLEEIEESKAFFQVYEGAVYMHQGHTYL 783
K + +S+R + R ++ + S +LEE + A + + GA+Y QG Y
Sbjct: 475 DPRKSVAFQVSLRQV-GVRIPIMSLSSGGKERLLEETDIYHAISECHPGAIYYSQGAAYE 533
Query: 784 VKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTV 843
V+ L+LS + ++T+ TD+ + + QL + Q L V
Sbjct: 534 VQRLDLSQGRIEVLPNETHFYTEPIVQTDVEIIKSEQ----HQQRPQLELYSGQVL---V 586
Query: 844 TTTWFGFYRLWRGSGIIFDTVELYLP-KYSYESQAVWIQVPQS-VKAVVEQNFSFRSGLH 901
T GF R I + EL P E++A+W+ + + A++++ LH
Sbjct: 587 TREVQGFNRKHNQYRNILEQCELEEPLSAPLETRALWMLIEDRFIDALIKRRLDPAGSLH 646
Query: 902 AASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
A H ++ ++P++V + D+ P + I +YD +PGG G S++
Sbjct: 647 AVEHGMIALLPLFVLGDRRDVGGVSIVPFHPQTRKATIFIYDGYPGGIGYSEE 699
>gi|289662227|ref|ZP_06483808.1| putative helicase [Xanthomonas campestris pv. vasculorum NCPPB 702]
Length = 831
Score = 358 bits (920), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 235/767 (30%), Positives = 376/767 (49%), Gaps = 102/767 (13%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
I R IPD + AL + GIS+LYSHQA++ A+ G++V + T T+SGKSL
Sbjct: 49 IPGRDGRYAPIPDDVPSALADALHARGISQLYSHQADAWAATQRGEHVAIVTPTASGKSL 108
Query: 286 CYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDR 345
CY LPV+ A + + ALY+FPTKALAQDQ+ LL + +A + + +DGDT R
Sbjct: 109 CYTLPVVSA-AMTSGAKALYLFPTKALAQDQVAELLELNRAGELGVKAFTFDGDTPGDAR 167
Query: 346 MWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVID 405
+R + ++++NPDMLH +ILP+H ++++ NLR +VVID
Sbjct: 168 QAIRLHGDIVVSNPDMLHQAILPHHTKWAQFFENLR-------------------YVVID 208
Query: 406 EAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELI 465
E H Y+G FG H +LRRL R+C+ YG++P F+ +AT NP H L + I
Sbjct: 209 EIHTYRGVFGSHVTNVLRRLKRICA-FYGANPQFILCSATIGNPHAHAQALIE-EQVHAI 266
Query: 466 QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHG 525
G+P K +LWNP V+N D+ R +A S+ I+ ++ ++ G
Sbjct: 267 TESGAPTGDKHVLLWNP-----PVVN---ADLG-LRASARSQSNRIARIA------IKSG 311
Query: 526 LRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLC 585
L+ + F ++R + E++ Y ++I + P I YR GY+ +RR +ER G +
Sbjct: 312 LKTLVFAQTRLMVEVLTKYLKDIFDHD-PRKPPRIRAYRGGYLPTERREVERAMRAGTID 370
Query: 586 GVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQY 645
G+ +T+ALELG+D+G +DV + G+PGS+A+ WQ+ GR+GRR++P+L V VA PLDQY
Sbjct: 371 GIISTSALELGVDIGALDVVILNGYPGSVAATWQRFGRAGRRQQPALGVLVASSQPLDQY 430
Query: 646 FMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLK 705
+++P+ + E +L H+ CAA E P I E FG I L
Sbjct: 431 VVRHPDFFADASPEHARTAPDQPLILFDHIRCAAFELP--FIASEP-FGP-----IDPLV 482
Query: 706 NRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN--EVLEEIEES 763
L+ + +E+I + P++ +S+R++ + V+D +++ E++ S
Sbjct: 483 FLEALAESEVIHQEGDRWEWIA-DSYPANAVSLRSVADGNFVVVDKSDGKQQIIAEVDYS 541
Query: 764 KAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYT--------DIHV 815
A +YEGA++M Q Y V+ L+ + A + + Y+T + DYT D V
Sbjct: 542 AAALTLYEGAIHMVQSTPYQVERLDWEGRKAYVTRTHVDYYTDSIDYTKLKVLDRFDGGV 601
Query: 816 SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYES 875
+G +++ ++ + + R + I + V LP +
Sbjct: 602 AGRGDSHHGEVH-------------VVRRVSGYKKIRYYTHENIGYGPVN--LPDQELHT 646
Query: 876 QAVWIQVPQSV--KAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSR 933
AVW Q+PQ+ KA + + G A++AL V + V + DL N +
Sbjct: 647 TAVWWQLPQATLGKAFASKQDAL-DGFLGAAYALHVVATVAVMADARDLQKAVGNGDGAW 705
Query: 934 Y---------------------------FPERILLYDRHPGGTGVSK 953
+ F + LYD PGG G+S+
Sbjct: 706 FAVADQTGRGQLRGVEEGDAATVELQQAFVPTVYLYDNFPGGVGLSE 752
>gi|320449791|ref|YP_004201887.1| dead/deah box helicase domain-containing protein [Thermus
scotoductus SA-01]
gi|320149960|gb|ADW21338.1| dead/deah box helicase domain protein [Thermus scotoductus SA-01]
Length = 745
Score = 358 bits (920), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 235/718 (32%), Positives = 365/718 (50%), Gaps = 92/718 (12%)
Query: 248 LKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMF 307
L++ G+ K ++HQ E++ A GKNVV+A T++GKSL + +PVL+A ++L +F
Sbjct: 50 LEALGL-KPFAHQKEALKAIEEGKNVVMAYSTAAGKSLVFQIPVLKAALE--GGTSLLLF 106
Query: 308 PTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSIL 367
PTKALA DQLR L AM +A A + YDGDT R + +L++NPDMLH +L
Sbjct: 107 PTKALAHDQLRRLKAMAEALGAK-GVYPYDGDTRADLRRKAKQEGLVLLSNPDMLHFGLL 165
Query: 368 PYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCR 427
P HG+F+ LS LR ++V+DE HAY+G FG H AL+L RL R
Sbjct: 166 PRHGEFASFLSRLR-------------------YLVLDELHAYRGVFGTHVALVLFRLLR 206
Query: 428 LCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLR 487
L H YG++P + ++AT N REH L LS +EL + + L +L P
Sbjct: 207 LARH-YGANPQVIAASATIGNAREHAEALTGLSFVELREEVARSEREVLVLLPKPLDA-- 263
Query: 488 SVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTRE 547
+ SP+ E +YL + + GLR + F +RK EL+ Y
Sbjct: 264 ---------------KGERRRSPLLEAAYLARALAEEGLRGLIFTNARKSAELIARY--- 305
Query: 548 ILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLH 607
A H + YRAGY A++RRR+E G++ + +T+ALELG+D+G +D +
Sbjct: 306 -----AAH--PRVRPYRAGYTAKERRRLEEALKTGEVQVLVSTSALELGVDIGELDAVVL 358
Query: 608 LGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQN 667
+G+PGSI++ WQ+AGR+GR R +L VY+ E PLD+YF+ PE L ++P E D +N
Sbjct: 359 VGYPGSISAFWQRAGRAGRGSRRALVVYIPREDPLDEYFLHRPELLLRTPPEVAVADPKN 418
Query: 668 HKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFE--- 724
+ HL AA E PLS +E + G S G P ++ A++ E
Sbjct: 419 PVLCPLHLHAAAWEKPLS--REEVHPGQAGSPGPFI----------PCPEALAELREKEG 466
Query: 725 -YIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYL 783
Y ++ P +++R + + + EVL ++E +A+++ + GA+Y+H G ++L
Sbjct: 467 RYYTPKRHPHRDLTLRGLGNTF--TLKGPDGEVLGYLDERQAYWEAHPGAIYLHGGESFL 524
Query: 784 VKELNLSSKIALCQKADLKYFTKTRDYTDIHV-SGGNNAYATKISKDQLTKTTAQALACT 842
V+ ++ + A ++T+ R TD+ V SG + + K L + +
Sbjct: 525 VRNIDPKRREIWLLPALEDHYTEPRAETDLEVLSGEAMGHGVWVGKVVLR----ERVVAY 580
Query: 843 VTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHA 902
V +F +G I + V L LP+ S+ ++A+W P +V G+HA
Sbjct: 581 VKKRFF--------TGSILEEVPLELPEISFPTEALWFHPP-----LVIPFQQIPGGIHA 627
Query: 903 ASHALLHVVPIYVRCNFSDLA----PECPNPHDSRYFPERILLYDRHPGGTGVSKQVT 956
H L+ ++P++V D+ P P P S P I +YD +PGG G +Q
Sbjct: 628 LEHTLIGLLPLFVLAERQDIGGISYPSYPRPLPSGGGPT-IFIYDGYPGGVGYVRQAA 684
>gi|418516174|ref|ZP_13082350.1| Distinct helicase family with a unique C-terminal domain including
a metal-binding cysteine cluster [Xanthomonas axonopodis
pv. malvacearum str. GSPB1386]
gi|410707237|gb|EKQ65691.1| Distinct helicase family with a unique C-terminal domain including
a metal-binding cysteine cluster [Xanthomonas axonopodis
pv. malvacearum str. GSPB1386]
Length = 831
Score = 358 bits (920), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 235/758 (31%), Positives = 377/758 (49%), Gaps = 106/758 (13%)
Query: 235 EIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEA 294
++P AL D AL++ GIS+LYSHQA++ A+ G++V + T T+SGKSLCY LPV+ A
Sbjct: 62 DVPSALAD----ALQARGISQLYSHQADAWAATQRGEHVAIVTPTASGKSLCYTLPVVSA 117
Query: 295 LSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARL 354
+ + ALY+FPTKALAQDQ+ LL + +A + + +DGDT R +R + +
Sbjct: 118 -AMTSGAKALYLFPTKALAQDQVAELLELNRAGELGVKAFTFDGDTPGDARQAIRLHGDI 176
Query: 355 LITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAF 414
+++NPDMLH +ILP+H ++++ NLR +VVIDE H Y+G F
Sbjct: 177 VVSNPDMLHQAILPHHTKWAQFFENLR-------------------YVVIDEIHTYRGVF 217
Query: 415 GCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQ 474
G H +LRRL R+C+ YG+ P F+ +AT NP H L + I G+P
Sbjct: 218 GSHVTNVLRRLKRICA-FYGATPQFILCSATIGNPHAHAQALIE-EQVHAITESGAPTGD 275
Query: 475 KLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRS 534
K +LWNP V+N D+ R +A S+ I+ ++ ++ GL+ + F ++
Sbjct: 276 KHVLLWNP-----PVVN---ADLG-LRASARSQSNRIARIA------IKSGLKTLVFAQT 320
Query: 535 RKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALE 594
R + E++ Y ++I + P I YR GY+ +RR +ER G + G+ +T+ALE
Sbjct: 321 RLMVEVLTKYLKDIFDHD-PRKPARIRAYRGGYLPTERREVERAMRAGNIDGIISTSALE 379
Query: 595 LGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLF 654
LG+D+G +DV + G+PGS+A+ WQ+ GR+GRR++P+L V VA PLDQY +++P+
Sbjct: 380 LGVDIGALDVVILNGYPGSVAATWQRFGRAGRRQQPALGVLVASSQPLDQYVVRHPDFFA 439
Query: 655 KSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDP 714
+ E +L H+ CAA E P I DE FG I L L+
Sbjct: 440 DASPEHARTAPDQPLILFDHIRCAAFELP--FIADEP-FGP-----IDPLVFLEALAESE 491
Query: 715 SLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN--EVLEEIEESKAFFQVYEG 772
+ +E+I + P++ +S+R++ + V+D +++ E++ S A +YEG
Sbjct: 492 VIHQEGDRWEWIA-DSYPANAVSLRSVADGNFVVVDKSDGKQQIIAEVDYSAAALTLYEG 550
Query: 773 AVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYT--------DIHVSGGNNAYAT 824
A++M Q Y V+ L+ + A + + Y+T + DYT D V+G +++
Sbjct: 551 AIHMVQSTPYQVERLDWEGRKAYVTRTHVDYYTDSIDYTKLKVLDRFDGGVAGRGDSHHG 610
Query: 825 KISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQ 884
++ + + R + I + V LP + AVW Q+PQ
Sbjct: 611 EVH-------------VVRRVSGYKKIRYYTHENIGYGPVN--LPDQELHTTAVWWQLPQ 655
Query: 885 SV--KAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRY-------- 934
+ KA + + G A++AL V + V + DL N + +
Sbjct: 656 TTLGKAFASKQDAL-DGFLGAAYALHVVATVAVMADARDLQKAVGNGDGAWFAVADQTGR 714
Query: 935 -------------------FPERILLYDRHPGGTGVSK 953
F + LYD PGG G+S+
Sbjct: 715 GQLRGVEEGEHATVELQQAFVPTVYLYDNFPGGVGLSE 752
>gi|418521893|ref|ZP_13087933.1| Distinct helicase family with a unique C-terminal domain including
a metal-binding cysteine cluster [Xanthomonas axonopodis
pv. malvacearum str. GSPB2388]
gi|410701822|gb|EKQ60337.1| Distinct helicase family with a unique C-terminal domain including
a metal-binding cysteine cluster [Xanthomonas axonopodis
pv. malvacearum str. GSPB2388]
Length = 831
Score = 358 bits (920), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 235/752 (31%), Positives = 374/752 (49%), Gaps = 94/752 (12%)
Query: 235 EIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEA 294
++P AL D AL++ GIS+LYSHQA++ A+ G++V + T T+SGKSLCY LPV+ A
Sbjct: 62 DVPSALAD----ALQARGISQLYSHQADAWAATQRGEHVAIVTPTASGKSLCYTLPVVSA 117
Query: 295 LSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARL 354
+ + ALY+FPTKALAQDQ+ LL + +A + + +DGDT R +R + +
Sbjct: 118 -AMTSGAKALYLFPTKALAQDQVAELLELNRAGELGVKAFTFDGDTPGDARQAIRLHGDI 176
Query: 355 LITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAF 414
+++NPDMLH +ILP+H ++++ NLR +VVIDE H Y+G F
Sbjct: 177 VVSNPDMLHQAILPHHTKWAQFFENLR-------------------YVVIDEIHTYRGVF 217
Query: 415 GCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQ 474
G H +LRRL R+C+ YG+ P F+ +AT NP H L + I G+P
Sbjct: 218 GSHVTNVLRRLKRICA-FYGATPQFILCSATIGNPHAHAQALIE-EQVHAITESGAPTGD 275
Query: 475 KLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRS 534
K +LWNP V+N D+ R +A S+ I+ ++ ++ GL+ + F ++
Sbjct: 276 KHVLLWNP-----PVVN---ADLG-LRASARSQSNRIARIA------IKSGLKTLVFAQT 320
Query: 535 RKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALE 594
R + E++ Y ++I + P I YR GY+ +RR +ER G + G+ +T+ALE
Sbjct: 321 RLMVEVLTKYLKDIFDHD-PRKPARIRAYRGGYLPTERREVERAMRAGNIDGIISTSALE 379
Query: 595 LGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLF 654
LG+D+G +DV + G+PGS+A+ WQ+ GR+GRR++P+L V VA PLDQY +++P+
Sbjct: 380 LGVDIGALDVVILNGYPGSVAATWQRFGRAGRRQQPALGVLVASSQPLDQYVVRHPDFFA 439
Query: 655 KSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDP 714
+ E +L H+ CAA E P I DE FG I L L+
Sbjct: 440 DASPEHARTAPDQPLILFDHIRCAAFELP--FIADEP-FGP-----IDPLVFLEALAESE 491
Query: 715 SLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN--EVLEEIEESKAFFQVYEG 772
+ +E+I + P++ +S+R++ + V+D +++ E++ S A +YEG
Sbjct: 492 VIHQEGDRWEWIA-DSYPANAVSLRSVADGNFVVVDKSDGKQQIIAEVDYSAAALTLYEG 550
Query: 773 AVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLT 832
A++M Q Y V+ L+ + A + + Y+T + DYT + V +
Sbjct: 551 AIHMVQSTPYQVERLDWEGRKAYVTRTHVDYYTDSIDYTKLKV-------LDRFDGGVAG 603
Query: 833 KTTAQALACTVTTTWFGF--YRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSV--KA 888
+ + V G+ R + I + V LP + AVW Q+PQ+ KA
Sbjct: 604 RGDSHHGEVHVVRRLSGYKKIRYYTHENIGYGPVN--LPDQELHTTAVWWQLPQATLGKA 661
Query: 889 VVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRY-------------- 934
+ + G A++AL V + V + DL N + +
Sbjct: 662 FASKQDAL-DGFLGAAYALHVVATVAVMADARDLQKAVGNGDGAWFAVADQTGRGQLRGV 720
Query: 935 -------------FPERILLYDRHPGGTGVSK 953
F + LYD PGG G+S+
Sbjct: 721 EEGEHATVELQQAFVPTVYLYDNFPGGVGLSE 752
>gi|78045611|ref|YP_361786.1| helicase [Xanthomonas campestris pv. vesicatoria str. 85-10]
gi|78034041|emb|CAJ21686.1| putative helicase [Xanthomonas campestris pv. vesicatoria str.
85-10]
Length = 831
Score = 358 bits (919), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 237/766 (30%), Positives = 374/766 (48%), Gaps = 100/766 (13%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
I R IPD + AL++ GIS+LYSHQA++ A+ G++V + T T+SGKSL
Sbjct: 49 IPGRAGCYAPIPDDVPSALADALQARGISQLYSHQADAWAATQRGEHVAIVTPTASGKSL 108
Query: 286 CYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDR 345
CY LPV+ A + + ALY+FPTKALAQDQ+ LL + +A + + +DGDT R
Sbjct: 109 CYTLPVVSA-AMTSGAKALYLFPTKALAQDQVAELLELNRAGELGVKAFTFDGDTPGDAR 167
Query: 346 MWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVID 405
+R + ++++NPDMLH +ILP+H ++++ NLR +VVID
Sbjct: 168 QAIRLHGDIVVSNPDMLHQAILPHHTKWAQFFENLR-------------------YVVID 208
Query: 406 EAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELI 465
E H Y+G FG H +LRRL R+C+ YG+ P F+ +AT NP H L + I
Sbjct: 209 EIHTYRGVFGSHVTNVLRRLKRICA-FYGATPQFILCSATIGNPHAHAQALIE-EQVHAI 266
Query: 466 QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHG 525
G+P K +LWNP V+N D+ R +A S+ I+ ++ ++ G
Sbjct: 267 TESGAPTGDKHVLLWNP-----PVVN---ADLG-LRASARSQSNRIARIA------IKSG 311
Query: 526 LRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLC 585
L+ + F ++R + E++ Y ++I + I YR GY+ +RR +ER G +
Sbjct: 312 LKTLVFAQTRLMVEVLTKYLKDIFDHDLRKPA-RIRAYRGGYLPTERREVERAMRAGTID 370
Query: 586 GVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQY 645
G+ +T+ALELG+D+G +DV + G+PGS+A+ WQ+ GR+GRR++P+L V VA PLDQY
Sbjct: 371 GIISTSALELGVDIGALDVVILNGYPGSVAATWQRFGRAGRRQQPALGVLVASSQPLDQY 430
Query: 646 FMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLK 705
+++P+ + E I +L H+ CAA E P I DE FG I L
Sbjct: 431 VVRHPDFFADASPEHARIAPDQPLILFDHIRCAAFELP--FIADEP-FGP-----IDPLV 482
Query: 706 NRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN--EVLEEIEES 763
L+ + +E+I + P++ +S+R++ + V+D +++ E++ S
Sbjct: 483 FLEALAESEVIHQEGDRWEWIA-DSYPANAVSLRSVADGNFVVVDKSDGKQQIIAEVDYS 541
Query: 764 KAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYA 823
A +YEGA++M Q Y V+ L+ + A + + Y+T + DYT + V
Sbjct: 542 AAALTLYEGAIHMVQSTPYQVERLDWEGRKAYVTRTHVDYYTDSIDYTKLKV-------- 593
Query: 824 TKISKDQLTKTTAQALAC-------TVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQ 876
D+ A C + + R + I + V LP +
Sbjct: 594 ----LDRFDGGVAGRGDCHHGEVHVVRRVSGYKKIRYYTHENIGYGPVN--LPDQELHTT 647
Query: 877 AVWIQVPQSV--KAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRY 934
AVW Q+PQ+ KA + + G A++AL V + V + DL N + +
Sbjct: 648 AVWWQLPQATLGKAFASKQDAL-DGFLGAAYALHVVATVAVMADARDLQKAVGNGDGAWF 706
Query: 935 ---------------------------FPERILLYDRHPGGTGVSK 953
F + LYD PGG G+S+
Sbjct: 707 AVADQTGRGQLRGVEEGDAATVELQQAFVPTVYLYDNFPGGVGLSE 752
>gi|374814879|ref|ZP_09718616.1| dead/deah box helicase domain-containing protein [Treponema
primitia ZAS-1]
Length = 762
Score = 358 bits (919), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 239/749 (31%), Positives = 381/749 (50%), Gaps = 80/749 (10%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
+ A V V +P L + L+ GI ++Y+HQA A G+NVVV T T+SGK+L
Sbjct: 27 LPATDGVFVPLPADLDSRIAAGLQDRGIREIYTHQAAVWDAVQRGRNVVVVTPTASGKTL 86
Query: 286 CYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDR 345
CYNLP L+AL D + ALY+FPTKAL+QDQ L + I + YDGDT R
Sbjct: 87 CYNLPTLQALLRDEKARALYLFPTKALSQDQQSELNELVGE-GIPIKVSTYDGDTPDSLR 145
Query: 346 MWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVID 405
+ RD R++I+NPDMLH ILP H ++ + SNL+ ++VID
Sbjct: 146 VAARDTGRIIISNPDMLHAGILPNHPRWIKFFSNLK-------------------YIVID 186
Query: 406 EAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELI 465
EAHAY+G G H A +LRRL R+C+ YGS P F+ +AT ANP+E L + L+
Sbjct: 187 EAHAYRGVLGSHVADVLRRLRRVCA-FYGSKPQFILCSATIANPKELAETLIG-GEVTLV 244
Query: 466 QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHG 525
N+G+P +K +L+NP + D + S ++E ++ G
Sbjct: 245 DNNGAPRGEKRIILYNPP-------------LVDAVQGIRR--SVVTESRRWMLAFLKGG 289
Query: 526 LRCIAFCRSRKLCELVLSYTREILEETAPHLVDS----ICVYRAGYVAEDRRRIERDFFG 581
++ I F SR E+ +Y E L A D+ + YR G + +RR IE+
Sbjct: 290 IKTILFAHSRVKTEVAAAYVNEDL---ANIYTDNKRIRVEAYRGGLLPNERREIEKGLRE 346
Query: 582 GKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGP 641
G + GV +TNALELGID+G +D ++ GFPGS S WQQ+GR+GRR S++V+VA P
Sbjct: 347 GTIRGVVSTNALELGIDIGGLDASVVAGFPGSFNSFWQQSGRAGRRGGSSVSVFVASSSP 406
Query: 642 LDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL---SLIYDEKYFGSGLS 698
LDQ+ M PE F+ E I+ N +L H+ CAA E P ++ E+ FG+ +
Sbjct: 407 LDQFIMNDPEWFFRKSAEEARINPDNPYILTDHVKCAAFELPFRDETIEKGEEPFGADVG 466
Query: 699 SGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQS--NEV 756
++ L+ G ++ +A + + P+ IS+R+ ++ ++D+ N V
Sbjct: 467 EVLSFLEEEG------TVRHTAGRWHW-ADRSFPAEGISLRSALADNVVIVDVSEGRNTV 519
Query: 757 LEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVS 816
+ E++ A +++ AVYMH+G YLV+ L+++++ L ++A++ YFT TDI V
Sbjct: 520 IGEMDRPSAKELIFKNAVYMHRGRQYLVESLDIANRKCLVREAEVNYFTDGLVKTDIKVL 579
Query: 817 GGNN----AYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYS 872
+ I D L ++ F R + + +E LP+
Sbjct: 580 TEDETLDFGSCAGILGDVLVRSQVAK---------FKKIRFHTHENVGYGDIE--LPEEE 628
Query: 873 YESQAVWIQVPQSV-KAVVEQNF---SFRSGLHAASHALLHVVPIYVRCNFSDL--APEC 926
+++++ + ++ V F + S L + H+ P+++ C+ D+ A
Sbjct: 629 MQTRSLVLLFGKTTGGGAVLSGFGEDAIGSILSGTGTLIKHIAPVFLLCDPRDIGVAERV 688
Query: 927 PNPHDSRYFPERILLYDRHPGGTGVSKQV 955
+PH + + +YD++PGGTG+++ +
Sbjct: 689 RDPH---FALPALYIYDKYPGGTGLAESL 714
>gi|301059567|ref|ZP_07200479.1| DEAD/DEAH box helicase [delta proteobacterium NaphS2]
gi|300446332|gb|EFK10185.1| DEAD/DEAH box helicase [delta proteobacterium NaphS2]
Length = 973
Score = 358 bits (919), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 252/746 (33%), Positives = 389/746 (52%), Gaps = 78/746 (10%)
Query: 218 GQMVHVED-ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVA 276
GQ V E + ARKAV E P + ++AL + I LY+HQ E+I+ GKNV+V+
Sbjct: 17 GQAVVFEHFLPARKAVYGE-PLTFHSDIQNALDGSQIKGLYTHQIEAILHLRVGKNVLVS 75
Query: 277 TMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL-LAMTKAFDASIDIGV 335
T T+SGK+L Y L VLE + + S AL++FP KAL DQL+ L + + +I +
Sbjct: 76 TETASGKTLIYTLSVLEKIIENHQSRALFLFPLKALEHDQLKTLSRWLGHMENLTIGAAI 135
Query: 336 YDGDTTQKDRMWLRDN-ARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYL 394
YDGDTT R +R N +L TNPDMLH IL +H + R+ +LR+
Sbjct: 136 YDGDTTSHQRKKIRQNPPHILFTNPDMLHRGILAHHQNWERLFKSLRM------------ 183
Query: 395 IFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCM 454
VV+DE H Y+G FG H + I+RRL RLC YGSDP F+ +AT ANP+
Sbjct: 184 -------VVLDEVHTYRGIFGSHMSQIIRRLRRLCR-FYGSDPQFILLSATVANPKPFGE 235
Query: 455 ELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEV 514
+L +E++Q G+P + + V NP SP
Sbjct: 236 QLIQ-QEIEVVQATGAPKSGQHVVFLNP------------------------AGSPNFSS 270
Query: 515 SYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRR 574
+ LF E V+ G R I F ++RK+ EL+ + +++ +P + I YRAG++ ++RRR
Sbjct: 271 ARLFTECVRQGFRTIVFAQARKVTELIHLWVKQL----SPAMRHKISSYRAGFLPQERRR 326
Query: 575 IERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAV 634
IER G L GV +T+ALELGID+G++D+ L +G+PG+I + WQ+ GR GR R S+ +
Sbjct: 327 IERRLARGDLLGVVSTSALELGIDIGYLDICLLVGYPGTIINTWQRGGRVGRSGRESMIL 386
Query: 635 YVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFG 694
VA LDQYFMK+P +LF+ E +D NH V++ HLVCAA E PL+ DE ++
Sbjct: 387 LVAKPDALDQYFMKHPHELFERSFEAAILDPNNHYVVKDHLVCAAAELPLTR-KDEGFWP 445
Query: 695 SGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN 754
L + L+ G LS D + + P +++IR+ E + + + ++
Sbjct: 446 QDLFHLLDELEEEGQLSRTAEGDPM-----WFSARRNPHLSVNIRS-AGETFTIFERETG 499
Query: 755 EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIH 814
+ + I+ KAF + + GA+Y+H+ Y V+ L L K + ++DLKY+T+ R +
Sbjct: 500 QAIGTIDGFKAFKECHPGAIYLHRARQYEVERLFLDKKDVVVHRSDLKYYTRARSDKE-- 557
Query: 815 VSGGNNAYATKISKDQLTKTTAQALA----CTVTTTWFGFYRLWRGSGIIFDTVELY-LP 869
T+I K ++ Q + VT G+ + + L LP
Sbjct: 558 ---------TEIIKVHHSRPEGQFIVREGILKVTEIITGYEKRSLPGQALMGVFPLEDLP 608
Query: 870 KYSYESQAVWIQVPQSVKAVVE-QNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPN 928
+E+ WI++ +K +E + F G+HA HA + + P++ C+ +D+ C
Sbjct: 609 PQIFETTGFWIEIEPILKRFIEKKGLHFMGGIHAIEHAAIGMFPLFALCDRNDIGGIC-Y 667
Query: 929 PHDSRYFPERILLYDRHPGGTGVSKQ 954
PH + I +YD +PGG G++++
Sbjct: 668 PHHPQVGKSAIFIYDAYPGGVGLAQR 693
>gi|21240852|ref|NP_640434.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
306]
gi|21106124|gb|AAM34970.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
306]
Length = 802
Score = 358 bits (918), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 235/758 (31%), Positives = 377/758 (49%), Gaps = 106/758 (13%)
Query: 235 EIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEA 294
++P AL D AL++ GIS+LYSHQA++ A+ G++V + T T+SGKSLCY LPV+ A
Sbjct: 33 DVPGALAD----ALQARGISQLYSHQADAWAATQRGEHVAIVTPTASGKSLCYTLPVVSA 88
Query: 295 LSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARL 354
+ + ALY+FPTKALAQDQ+ LL + +A + + +DGDT R +R + +
Sbjct: 89 -AMTSGAKALYLFPTKALAQDQVAELLELNRAGELGVKAFTFDGDTPGDARQAIRLHGDI 147
Query: 355 LITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAF 414
+++NPDMLH +ILP+H ++++ NLR +VVIDE H Y+G F
Sbjct: 148 VVSNPDMLHQAILPHHTKWAQFFENLR-------------------YVVIDEIHTYRGVF 188
Query: 415 GCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQ 474
G H +LRRL R+C+ YG+ P F+ +AT NP H L + I G+P
Sbjct: 189 GSHVTNVLRRLKRICA-FYGATPQFILCSATIGNPHAHAQALIE-EQVHGITESGAPTGD 246
Query: 475 KLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRS 534
K +LWNP V+N D+ R +A S+ I+ ++ ++ GL+ + F ++
Sbjct: 247 KHVLLWNP-----PVVN---ADLG-LRASARSQSNRIARIA------IKSGLKTLVFAQT 291
Query: 535 RKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALE 594
R + E++ Y ++I + P I YR GY+ +RR +ER G + G+ +T+ALE
Sbjct: 292 RLMVEVLTKYLKDIFDHD-PRKPARIRAYRGGYLPTERREVERAMRAGNIDGIISTSALE 350
Query: 595 LGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLF 654
LG+D+G +DV + G+PGS+A+ WQ+ GR+GRR++P+L V VA PLDQY +++P+
Sbjct: 351 LGVDIGALDVVILNGYPGSVAATWQRFGRAGRRQQPALGVLVASSQPLDQYVVRHPDFFA 410
Query: 655 KSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDP 714
+ E +L H+ CAA E P I DE FG I L L+
Sbjct: 411 DASPEHARTAPDQPLILFDHIRCAAFELP--FIADEP-FGP-----IDPLVFLEALAESE 462
Query: 715 SLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN--EVLEEIEESKAFFQVYEG 772
+ +E+I + P++ +S+R++ + V+D +++ E++ S A +YEG
Sbjct: 463 VIHQEGDRWEWIA-DSYPANAVSLRSVADGNFVVVDKSDGKQQIIAEVDYSAAALTLYEG 521
Query: 773 AVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYT--------DIHVSGGNNAYAT 824
A++M Q Y V+ L+ + A + + Y+T + DYT D V+G +++
Sbjct: 522 AIHMVQSTPYQVERLDWEGRKAYVTRTHVDYYTDSIDYTKLKVLDRFDGGVAGRGDSHHG 581
Query: 825 KISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQ 884
++ + + R + I + V LP + AVW Q+PQ
Sbjct: 582 EVH-------------VVRRVSGYKKIRYYTHENIGYGPVN--LPDQELHTTAVWWQLPQ 626
Query: 885 SV--KAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRY-------- 934
+ KA + + G A++AL V + V + DL N + +
Sbjct: 627 ATLGKAFASKQDAL-DGFLGAAYALHVVATVAVMADARDLQKAVGNGDGAWFAVADQTGR 685
Query: 935 -------------------FPERILLYDRHPGGTGVSK 953
F + LYD PGG G+S+
Sbjct: 686 GQLRGVEEGDAATVELQQAFVPTVYLYDNFPGGVGLSE 723
>gi|21229532|ref|NP_635449.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66766404|ref|YP_241166.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
str. 8004]
gi|21110998|gb|AAM39373.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66571736|gb|AAY47146.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
str. 8004]
Length = 802
Score = 358 bits (918), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 237/767 (30%), Positives = 379/767 (49%), Gaps = 102/767 (13%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
I R+ IPD + AL++ GIS+LYSHQA++ AS G++V + T T+SGKSL
Sbjct: 20 IPGREGHYAPIPDDVPAALADALRARGISQLYSHQADAWAASQRGEHVAIVTPTASGKSL 79
Query: 286 CYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDR 345
CY LPV+ A + + ALY+FPTKALAQDQ+ LL + +A + + +DGDT R
Sbjct: 80 CYTLPVVSA-AMTAGAKALYLFPTKALAQDQVAELLELNRAGELGVKAFTFDGDTPGDAR 138
Query: 346 MWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVID 405
+R + ++++NPDMLH +ILP+H ++++ NLR +VVID
Sbjct: 139 QAIRLHGDIVVSNPDMLHQAILPHHTKWAQFFENLR-------------------YVVID 179
Query: 406 EAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELI 465
E H Y+G FG H +LRRL R+C+ YG++P F+ +AT NP H L + I
Sbjct: 180 EIHTYRGVFGSHVTNVLRRLKRICA-FYGANPQFILCSATIGNPHAHAQALIE-ERVHAI 237
Query: 466 QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHG 525
G+P K +LWNP V+N D+ R +A S+ I+ ++ ++ G
Sbjct: 238 TESGAPTGDKHVLLWNP-----PVVN---ADLG-LRASARSQSNRIARIA------IKSG 282
Query: 526 LRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLC 585
L+ + F ++R + E++ Y ++I + P I YR GY+ +RR +ER G +
Sbjct: 283 LKTLVFAQTRLMVEVLTKYLKDIFDHD-PRKPARIRAYRGGYLPTERREVERAMRAGTID 341
Query: 586 GVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQY 645
G+ +T+ALELG+D+G +DV + G+PGS+A+ WQ+ GR+GRR++P+L V VA PLDQY
Sbjct: 342 GIVSTSALELGVDIGALDVVILNGYPGSVAATWQRFGRAGRRQQPALGVLVASSQPLDQY 401
Query: 646 FMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLK 705
+++P+ + E I +L H+ CAA E P I E FG I L
Sbjct: 402 VVRHPDFFADASPEHARIAPDQPLILFDHIRCAAFELP--FIASEP-FGP-----IDPLV 453
Query: 706 NRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN--EVLEEIEES 763
L+ + +E+I + P++ +S+R++ + V+D +++ E++ S
Sbjct: 454 FLEALAESEVIHQEGDRWEWIA-DSYPANAVSLRSVADGNFVVVDKSDGKQQIIAEVDYS 512
Query: 764 KAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYT--------DIHV 815
A +YEGA++M Q Y V+ L+ + A + + Y+T + DYT D V
Sbjct: 513 AAALTLYEGAIHMVQSTPYQVERLDWEGRKAYVTRTHVDYYTDSIDYTKLKVLDRFDGGV 572
Query: 816 SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYES 875
+G +++ ++ + + R + I + V LP +
Sbjct: 573 AGRGDSHHGEVH-------------VVRRVSGYKKIRYYTHENIGYGPVN--LPDQELHT 617
Query: 876 QAVWIQVPQSV--KAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSR 933
AVW Q+PQ+ KA + + G A++AL V + V + DL N +
Sbjct: 618 TAVWWQLPQATLGKAFASKQDAL-DGFLGAAYALHVVATVAVMADARDLQKAVGNGDGAW 676
Query: 934 Y---------------------------FPERILLYDRHPGGTGVSK 953
+ F + LYD PGG G+S+
Sbjct: 677 FAVADQTGRGQLRGVDEGEEGAVELQQAFVPTVYLYDNFPGGVGLSE 723
>gi|289667121|ref|ZP_06488196.1| putative helicase [Xanthomonas campestris pv. musacearum NCPPB
4381]
Length = 831
Score = 358 bits (918), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 234/767 (30%), Positives = 377/767 (49%), Gaps = 102/767 (13%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
I R IPD + AL + GIS+LYSHQA++ A+ G++V + T T+SGKSL
Sbjct: 49 IPGRDGRYAPIPDDVPSALADALHARGISQLYSHQADAWAATQRGEHVAIVTPTASGKSL 108
Query: 286 CYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDR 345
CY LPV+ A + + ALY+FPTKALAQDQ+ LL + +A + + +DGDT R
Sbjct: 109 CYTLPVVSA-AMTSGAKALYLFPTKALAQDQVAELLELNRAGELGVKAFTFDGDTPGDAR 167
Query: 346 MWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVID 405
+R ++ ++++NPDMLH +ILP+H ++++ NLR +VVID
Sbjct: 168 QAIRLHSDIVVSNPDMLHQAILPHHTKWAQFFENLR-------------------YVVID 208
Query: 406 EAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELI 465
E H Y+G FG H +LRRL R+C+ YG++P F+ +AT NP H L + I
Sbjct: 209 EIHTYRGVFGSHVTNVLRRLKRICA-FYGANPQFILRSATIGNPHAHAQALIE-EQVHAI 266
Query: 466 QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHG 525
G+P K +LWNP V+N D+ R +A S+ I+ ++ ++ G
Sbjct: 267 TESGAPTGDKHVLLWNP-----PVVN---ADLG-LRASARSQSNRIARIA------IKSG 311
Query: 526 LRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLC 585
L+ + F ++R + E++ Y ++I + P I YR GY+ +RR +ER G +
Sbjct: 312 LKTLVFAQTRLMVEVLTKYLKDIFDHD-PRKPPRIRAYRGGYLPTERREVERAMRAGTID 370
Query: 586 GVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQY 645
G+ +T+ALELG+D+G +D+ + G+PGS+A+ WQ+ GR+GRR++P+L V VA PLDQY
Sbjct: 371 GIISTSALELGVDIGALDLVILNGYPGSVAATWQRFGRAGRRQQPALGVLVASSQPLDQY 430
Query: 646 FMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLK 705
+++P+ + E +L H+ CAA E P I E FG I L
Sbjct: 431 VVRHPDFFADASPEHARTAPDQPLILFDHIRCAAFELP--FIASEP-FGP-----IDPLV 482
Query: 706 NRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN--EVLEEIEES 763
L+ + +E+I + P++ +S+R++ + V+D +++ E++ S
Sbjct: 483 FLEALAESEVIHQEGDRWEWIA-DSYPANAVSLRSVADGNFVVVDKSDGKQQIIAEVDYS 541
Query: 764 KAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYT--------DIHV 815
A +YEGA++M Q Y V+ L+ + A + + Y+T + DYT D V
Sbjct: 542 AAALTLYEGAIHMVQSTPYQVERLDWEGRKAYVTRTHVDYYTDSIDYTKLKVLDRFDGGV 601
Query: 816 SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYES 875
+G +++ ++ + + R + I + V LP +
Sbjct: 602 AGRGDSHHGEVH-------------VVRRVSGYKKIRYYTHENIGYGPVN--LPDQELHT 646
Query: 876 QAVWIQVPQSV--KAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSR 933
AVW Q+PQ+ KA + + G A++AL V + V + DL N +
Sbjct: 647 TAVWWQLPQATLGKAFASKQDAL-DGFLGAAYALHVVATVAVMADARDLQKAVGNGDGAW 705
Query: 934 Y---------------------------FPERILLYDRHPGGTGVSK 953
+ F + LYD PGG G+S+
Sbjct: 706 FAVADQTGRGQLRGVEAGDAATVELQQAFVPTVYLYDNFPGGVGLSE 752
>gi|294659083|ref|XP_461419.2| DEHA2F24838p [Debaryomyces hansenii CBS767]
gi|202953602|emb|CAG89834.2| DEHA2F24838p [Debaryomyces hansenii CBS767]
Length = 1187
Score = 358 bits (918), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 257/832 (30%), Positives = 406/832 (48%), Gaps = 113/832 (13%)
Query: 207 VEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMA 266
+E L G + + ++ + ++ ALL+ A+ LY HQ E++ A
Sbjct: 273 IETLTPAQGGRFDTLPIKQEGNESVIHADLKRALLNYKNIAIDDG----LYLHQVEALKA 328
Query: 267 SLAGKN----VVVATMTSSGKSLCYNLPVLEALSHDLSS-------SALYMFPTKALAQD 315
+ + V+V+T TSSGKSL Y LP++ + ++S +A ++FPTKALAQD
Sbjct: 329 LMFDNDYKNHVIVSTSTSSGKSLIYQLPIINDILWNISKGNKKRECTAFFIFPTKALAQD 388
Query: 316 QLRALLAMTKAFDAS----IDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHG 371
Q R L K + I + YDGDT +DR +R A ++ TNPD +H SILP H
Sbjct: 389 QKRHLQEFIKHLTVTQNRQIIVDTYDGDTPCQDRSSIRTFADIIFTNPDAIHASILPNHS 448
Query: 372 QFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSH 431
S F + +L L ++VV+DE H YKG FG H + ++ RL R+ ++
Sbjct: 449 GTS----------FDRSSWHDFLSAL--KYVVMDELHVYKGTFGMHVSYVMSRLMRIVTN 496
Query: 432 VYG-------SDPSFVFSTATSANPREHCMELANLSTLELI---QNDGSPCAQKLFVLWN 481
+ ++ F+ +AT NP H + +S+ E I DGSPC++K V+WN
Sbjct: 497 LRKDQAIYPLNNLQFISCSATIKNPVSHFRAVCGISSKEKIVHVYEDGSPCSEKKLVVWN 556
Query: 482 PTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHG---------LRCIAFC 532
P + + K QT +N +S + +E + ++ I FC
Sbjct: 557 PPALMNK---KGQTPSSTGFGKSNSLNSVLVPRENTISESAKLLLQLLNSLSTIKVIVFC 613
Query: 533 RSRKLCELVLSYTREILEE---TAPHLVDS-ICVYRAGYVAEDRRRIERDFFGGKLCGVA 588
R +CEL++ R +L + L +S I YR GY DRR IE F GKL +
Sbjct: 614 PIRVVCELMMKEIRSLLSNPTFSGSSLSESDIMSYRGGYSKSDRRVIEEKMFNGKLRAII 673
Query: 589 ATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRR--ERPSLAVYVAFEGPLDQYF 646
ATNALELGID+ +DV + GFP S ++L QQ GR+GR + SLA++VA PLDQ++
Sbjct: 674 ATNALELGIDLSDLDVVITCGFPMSKSNLHQQFGRAGRGSISQGSLAIFVAGSKPLDQHY 733
Query: 647 MKYPEKLF-KSPIECCHID-----AQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLS-- 698
+KYP +L KS E ++ N ++E HL CAA E P+ + D +F S S
Sbjct: 734 LKYPLELCDKSTYEDLCVEGLMDLGSNQLIMEMHLQCAAFEWPIDIEGDIDWFSSNGSIN 793
Query: 699 ---SGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQS-- 753
+ I + R Y D +S + + P ++IRA+E Y V+D +
Sbjct: 794 KKNAFIKLCRERLYKDKDNKYRTSPRYLPW------PVDHVAIRAVEETNYAVVDTTNGR 847
Query: 754 NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDI 813
N V+EE+E S+ F +YEG +++HQG+ YLV E N A ++ + + T+ RD+TD+
Sbjct: 848 NIVIEEVEASRTSFTLYEGGIFLHQGYPYLVTEFNSDGCFAKVERVKVDWITQQRDFTDV 907
Query: 814 ------HVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELY 867
++ N T D T + T+ FG++++ R S I+ + VE+
Sbjct: 908 DPVEVEYIKCLNPPLDTNKVND--IPTFFGKIETTIVV--FGYFKVNRRSEIL-EAVEVK 962
Query: 868 LPKYSYESQAVWIQVP-QSVKAVVEQNFSFRSGLHAASHALLHVVPIYV----------- 915
P S+ WI +P ++ + E++ S +G+HAA HA+++++P+++
Sbjct: 963 NPPVILHSKGFWIDIPVNALNVIQEKDLSPAAGIHAAQHAIMNILPLFINGGATTNPNAK 1022
Query: 916 ---RCNFSDLAPECPNP-------HDSRYFPERILLYDRH--PGGTGVSKQV 955
S+L EC P R P R++ YD P G+G++ +
Sbjct: 1023 FSSNVGESELMTECKAPEKEFARRQTKRKRPARLIFYDAKGGPQGSGIAAKT 1074
>gi|284989198|ref|YP_003407752.1| DEAD/DEAH box helicase domain-containing protein [Geodermatophilus
obscurus DSM 43160]
gi|284062443|gb|ADB73381.1| DEAD/DEAH box helicase domain protein [Geodermatophilus obscurus
DSM 43160]
Length = 848
Score = 357 bits (917), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 243/738 (32%), Positives = 363/738 (49%), Gaps = 56/738 (7%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+ HV + R + + P + + L++ G+ + HQ E+ + G +VVVAT T
Sbjct: 51 VTHVHRMPVRDSRTLPWPAWVSPELRGRLEAQGVHAPWRHQVEAAQLARDGSHVVVATGT 110
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGD 339
+SGKSL Y +P L L+ D + LY+ PTKALA+DQL ++ + D S+ YDGD
Sbjct: 111 ASGKSLAYQVPALTRLAEDPRACVLYLAPTKALARDQLASVAELA---DPSVRPAAYDGD 167
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T ++R W+R ++R ++TNPDMLH +LP H ++S S LR +A+
Sbjct: 168 TPMEEREWVRRHSRWIVTNPDMLHRGVLPAHQKWS---STLRRLAY-------------- 210
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
VV+DE HAY+G FG H +LRRL YG++P F+ ++AT A P L
Sbjct: 211 --VVVDECHAYRGVFGSHVGHVLRRLR-RICRRYGAEPVFLLASATVAEPAAAATRLVGA 267
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
+ + + DGSP F LW P R+ + A S ++ + L A
Sbjct: 268 PVVAVTE-DGSPRPGATFALWEPPLTERT-----------GEHGAPLRRSAAADAATLLA 315
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETA-PHLVDSICVYRAGYVAEDRRRIERD 578
++V+ G R +AF RSR+ E V R +L + L + YR GY+ E+RR +ER
Sbjct: 316 DLVERGARTLAFVRSRRSAESVAEQARHVLRDRGRADLARRVDSYRGGYLPEERRELERA 375
Query: 579 FFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAF 638
G+L GVA TNALELGID+ +D + G+PG++ASLWQQAGR+GR +R SL V+VA
Sbjct: 376 LSAGELLGVATTNALELGIDIAGLDAVVLAGYPGTLASLWQQAGRAGRAQRESLVVFVAR 435
Query: 639 EGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLS 698
+ PLD Y +P +F P+E D N VL L CAA E PL + D FG ++
Sbjct: 436 DDPLDHYLAHHPRAVFGRPVEATVTDPGNPYVLGPQLCCAAAELPL-VPEDLADFGGAVA 494
Query: 699 SG-ITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVL 757
+ L G L P+ Y P + IR +I+ + +L
Sbjct: 495 EARVEELVAEGSLRRRPT-------GWYWAGRGRPD--VDIRGSGLAPVTIIEGDTGRLL 545
Query: 758 EEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSG 817
++ A V+ GAVY+H+G TY+V E + +A+ ++ T RD TD+ +
Sbjct: 546 GTVDGDAAHATVHTGAVYVHRGETYVVDEFCVDDAVAVVHPESPEWTTVARDVTDLAI-- 603
Query: 818 GNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQA 877
A S+ L TA VT + R GSG + L LP ++A
Sbjct: 604 ----VAVDRSR-SLGTVTAHTGVVDVTNQVVAYQRRRLGSGEVLAEFPLDLPPRQLRTRA 658
Query: 878 VWIQVPQSVKAVVE-QNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFP 936
VW+ + + A + + LHAA HA + ++P+ C+ DL H
Sbjct: 659 VWLTLDERAVARAKVDDAELPGSLHAAEHAAIGLLPLLATCDRWDLGGVSTALHPDTGA- 717
Query: 937 ERILLYDRHPGGTGVSKQ 954
+++YD HPGG G +++
Sbjct: 718 ATVVVYDGHPGGAGFAER 735
>gi|325926824|ref|ZP_08188129.1| helicase family protein with metal-binding cysteine cluster
[Xanthomonas perforans 91-118]
gi|325542790|gb|EGD14248.1| helicase family protein with metal-binding cysteine cluster
[Xanthomonas perforans 91-118]
Length = 831
Score = 357 bits (917), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 234/766 (30%), Positives = 375/766 (48%), Gaps = 100/766 (13%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
I R IP+ + AL++ GIS+LYSHQA++ A+ G++V + T T+SGKSL
Sbjct: 49 IPGRDGSYAPIPEDVPAALADALQARGISQLYSHQADAWAATQRGEHVAIVTPTASGKSL 108
Query: 286 CYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDR 345
CY LPV+ A + + ALY+FPTKALAQDQ+ LL + +A + + +DGDT R
Sbjct: 109 CYTLPVVSA-AMTSGAKALYLFPTKALAQDQVAELLELNRAGELGVKAFTFDGDTPGDAR 167
Query: 346 MWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVID 405
+R + ++++NPDMLH +ILP+H ++++ NLR +VVID
Sbjct: 168 QAIRLHGDIVVSNPDMLHQAILPHHTKWAQFFENLR-------------------YVVID 208
Query: 406 EAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELI 465
E H Y+G FG H +LRRL R+C+ YG+ P F+ +AT NP H L + I
Sbjct: 209 EIHTYRGVFGSHVTNVLRRLKRICA-FYGATPQFILCSATIGNPHAHAQALIE-EQVHAI 266
Query: 466 QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHG 525
G+P K +LWNP V+N D+ R +A S+ I+ ++ ++ G
Sbjct: 267 TESGAPTGDKHVLLWNP-----PVVN---ADLG-LRASARSQSNRIARIA------IKSG 311
Query: 526 LRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLC 585
L+ + F ++R + E++ Y ++I + P I YR GY+ +RR +ER G +
Sbjct: 312 LKTLVFAQTRLMVEVLTKYLKDIFDHD-PRKPARIRAYRGGYLPTERREVERAMRAGTID 370
Query: 586 GVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQY 645
G+ +T+ALELG+D+G +DV + G+PGS+A+ WQ+ GR+GRR++P+L V VA PLDQY
Sbjct: 371 GIISTSALELGVDIGALDVVILNGYPGSVAATWQRFGRAGRRQQPALGVLVASSQPLDQY 430
Query: 646 FMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLK 705
+++P+ + E +L H+ CAA E P I DE + G + L+
Sbjct: 431 VVRHPDFFADASPEHARTAPDQPLILFDHIRCAAFELP--FIADEPF---GPIDPVVFLE 485
Query: 706 NRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN--EVLEEIEES 763
L+ + +E+I + P++ +S+R++ + V+D +++ E++ S
Sbjct: 486 A---LAESEVIHQEGDRWEWIA-DSYPANAVSLRSVADGNFVVVDKSDGKQQIIAEVDYS 541
Query: 764 KAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYA 823
A +YEGA++M Q Y V+ L+ + A + + Y+T + DYT + V
Sbjct: 542 AAALTLYEGAIHMVQSTPYQVERLDWEGRKAYVTRTHVDYYTDSIDYTKLKV-------- 593
Query: 824 TKISKDQLTKTTAQALAC-------TVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQ 876
D+ A C + + R + I + V LP +
Sbjct: 594 ----LDRFDGGVAGRGDCHHGEVHVVRRVSGYKKIRYYTHENIGYGPVN--LPDQELHTT 647
Query: 877 AVWIQVPQSV--KAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRY 934
AVW Q+PQ+ KA + + G A++AL V + V + DL N + +
Sbjct: 648 AVWWQLPQATLGKAFASKQDAL-DGFLGAAYALHVVATVAVMADARDLQKAVGNGDGAWF 706
Query: 935 ---------------------------FPERILLYDRHPGGTGVSK 953
F + LYD PGG G+S+
Sbjct: 707 AVADQTGRGQLRGVEEGDAATVELQQAFVPTVYLYDNFPGGVGLSE 752
>gi|58579789|ref|YP_198805.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae KACC
10331]
gi|58424383|gb|AAW73420.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae KACC
10331]
Length = 865
Score = 357 bits (917), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 234/767 (30%), Positives = 377/767 (49%), Gaps = 102/767 (13%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
I R IP+ + AL++ GIS+LYSHQA++ A+ G++V + T T+SGKSL
Sbjct: 83 IPGRDGRYAPIPEDVPSALADALQARGISQLYSHQADAWAATQRGEHVAIVTPTASGKSL 142
Query: 286 CYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDR 345
CY LPV+ A + + ALY+FPTKALAQDQ+ LL + +A + + +DGDT R
Sbjct: 143 CYTLPVVSA-AMTSGAKALYLFPTKALAQDQVAELLELNRAGELGVKAFTFDGDTPGDAR 201
Query: 346 MWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVID 405
+R + ++++NPDMLH +ILP+H ++++ NLR +VVID
Sbjct: 202 QAIRLHGDIVVSNPDMLHQAILPHHTKWAQFFENLR-------------------YVVID 242
Query: 406 EAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELI 465
E H Y+G FG H +LRRL R+C+ YG+ P F+ +AT NP+ H L + I
Sbjct: 243 EIHTYRGVFGSHVTNVLRRLKRICA-FYGATPQFILCSATIGNPQAHAQALIE-EQVHAI 300
Query: 466 QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHG 525
G+P K +LWNP V+N D+ R +A S+ I+ ++ ++ G
Sbjct: 301 TESGAPTGDKHVLLWNP-----PVVN---ADLG-LRASARSQSNRIARIA------IKSG 345
Query: 526 LRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLC 585
L+ + F ++R + E++ Y ++I + P I YR GY+ +RR +ER G +
Sbjct: 346 LKTLVFAQTRLMVEVLTKYLKDIFDHD-PRKPPRIRAYRGGYLPTERREVERAMRAGTID 404
Query: 586 GVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQY 645
G+ +T+ALELG+D+G +DV + G+PGS+A+ WQ+ GR+GRR++P+L V VA PLDQY
Sbjct: 405 GIVSTSALELGVDIGALDVVILNGYPGSVAATWQRFGRAGRRQQPALGVLVASSQPLDQY 464
Query: 646 FMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLK 705
+++P+ + E +L H+ CAA E P I E FG I L
Sbjct: 465 VVRHPDFFADASPEHARTAPDQPLILFDHIRCAAFELP--FIASEP-FGP-----IDPLV 516
Query: 706 NRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN--EVLEEIEES 763
L+ + +E+I + P+ +S+R++ + V+D +++ E++ S
Sbjct: 517 FLEVLAESEVIHQEGDRWEWIA-DSYPATAVSLRSVADGNFVVVDKSDGKQQIIAEVDYS 575
Query: 764 KAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYT--------DIHV 815
A +YEGA++M Q Y V+ L+ + + A + + Y+T + DYT D V
Sbjct: 576 AAALTLYEGAIHMVQSRPYQVERLDWAGRKAYVTRTHVDYYTDSIDYTKLKVLDRFDGGV 635
Query: 816 SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYES 875
+G +++ ++ + + R + I + V LP +
Sbjct: 636 AGRGDSHHGEVH-------------VVRRVSGYKKIRYYTHENIGYGPVN--LPDQELHT 680
Query: 876 QAVWIQVPQSV--KAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDS- 932
AVW Q+PQ+ KA + + G A++AL V + V + DL N +
Sbjct: 681 TAVWWQLPQATLGKAFTSKQDAL-DGFLGAAYALHVVATVAVMADARDLQKAVGNGDGAW 739
Query: 933 --------------------------RYFPERILLYDRHPGGTGVSK 953
+ F + LYD PGG G+S+
Sbjct: 740 CAVADQTGRGQLRGVEEGDTATVELLQTFVPTVYLYDNFPGGVGLSE 786
>gi|188574426|ref|YP_001911355.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188518878|gb|ACD56823.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 831
Score = 357 bits (917), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 234/767 (30%), Positives = 378/767 (49%), Gaps = 102/767 (13%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
I R IP+ + AL++ GIS+LYSHQA++ A+ G++V + T T+SGKSL
Sbjct: 49 IPGRDGRYASIPEDVPSALADALQARGISQLYSHQADAWAATQRGEHVAIVTPTASGKSL 108
Query: 286 CYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDR 345
CY LPV+ A + + ALY+FPTKALAQDQ+ LL + +A + + +DGDT R
Sbjct: 109 CYTLPVVSA-AMTSGAKALYLFPTKALAQDQVAELLELNRAGELGVKAFTFDGDTPGDAR 167
Query: 346 MWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVID 405
+R + ++++NPDMLH +ILP+H ++++ NLR +VVID
Sbjct: 168 QAIRLHGDIVVSNPDMLHQAILPHHTKWAQFFENLR-------------------YVVID 208
Query: 406 EAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELI 465
E H Y+G FG H +LRRL R+C+ YG+ P F+ +AT NP+ H L + I
Sbjct: 209 EIHTYRGVFGSHVTNVLRRLKRICA-FYGATPQFILCSATIGNPQAHAQALIE-EQVHAI 266
Query: 466 QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHG 525
G+P K +LWNP V+N D+ R +A S+ I+ ++ ++ G
Sbjct: 267 TESGAPTGDKHVLLWNP-----PVVN---ADLG-LRASARSQSNRIARIA------IKSG 311
Query: 526 LRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLC 585
L+ + F ++R + E++ Y ++I + P I YR GY+ +RR +ER G +
Sbjct: 312 LKTLVFAQTRLMVEVLTKYLKDIFDHD-PRKPPRIRAYRGGYLPTERREVERAMRAGTID 370
Query: 586 GVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQY 645
G+ +T+ALELG+D+G +DV + G+PGS+A+ WQ+ GR+GRR++P+L V VA PLDQY
Sbjct: 371 GIVSTSALELGVDIGALDVVILNGYPGSVAATWQRFGRAGRRQQPALGVLVASSQPLDQY 430
Query: 646 FMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLK 705
+++P+ + E +L H+ CAA E P I E FG I L
Sbjct: 431 VVRHPDFFADASPEHARTAPDQPLILFDHIRCAAFELP--FIASEP-FGP-----IDPLV 482
Query: 706 NRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN--EVLEEIEES 763
L+ + +E+I + P++ +S+R++ + V+D +++ E++ S
Sbjct: 483 FLEALAESEVIHQEGDRWEWIA-DSYPANAVSLRSVADGNFVVVDKSDGKQQIIAEVDYS 541
Query: 764 KAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYT--------DIHV 815
A +YEGA++M Q Y V+ L+ + + A + + Y+T + DYT D V
Sbjct: 542 AAALTLYEGAIHMVQSTPYQVERLDWAGRKAYVTRTHVDYYTDSIDYTKLKVLDRFDGGV 601
Query: 816 SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYES 875
+G +++ ++ + + R + I + V LP +
Sbjct: 602 AGRGDSHHGEVH-------------VVRRVSGYKKIRYYTHENIGYGPVN--LPDQELHT 646
Query: 876 QAVWIQVPQSV--KAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDS- 932
AVW Q+PQ+ KA + + G A++AL V + V + DL N +
Sbjct: 647 TAVWWQLPQATLGKAFTSKQDAL-DGFLGAAYALHVVATVAVMADARDLQKAVGNGDGAW 705
Query: 933 --------------------------RYFPERILLYDRHPGGTGVSK 953
+ F + LYD PGG G+S+
Sbjct: 706 CAVADQTGRGQLRGVEEGDTATVELLQTFVPTVYLYDNFPGGVGLSE 752
>gi|305680548|ref|ZP_07403356.1| putative DEAH-box helicase [Corynebacterium matruchotii ATCC 14266]
gi|305660079|gb|EFM49578.1| putative DEAH-box helicase [Corynebacterium matruchotii ATCC 14266]
Length = 812
Score = 357 bits (917), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 246/752 (32%), Positives = 362/752 (48%), Gaps = 95/752 (12%)
Query: 253 ISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKAL 312
I++ Y HQ+ + + G++V+VAT TSSGKSL Y LP L L+ D ++ ALY+ PTKAL
Sbjct: 39 ITRPYQHQSLTATTAHDGRHVIVATGTSSGKSLGYQLPALTDLARDPAACALYLTPTKAL 98
Query: 313 AQDQLRALLAMTKAFDA--SIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYH 370
DQL A+L + +A A SI+ YDGDT + R +R +R L+TNPDMLH IL Y
Sbjct: 99 GNDQLTAILRLCRADPALASINPAPYDGDTPTEARRTIRATSRYLVTNPDMLHGGILAYP 158
Query: 371 GQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCS 430
+ R+ +NLR +V++DEAH Y+G FG H +L+LRRL RL
Sbjct: 159 DLWRRLFANLR-------------------YVIVDEAHQYRGVFGAHVSLVLRRLLRLAR 199
Query: 431 HV------------------------YGSDPSFVFSTATSANPREHCMELANLSTLELIQ 466
P + ++ATS NP +H L + +
Sbjct: 200 RAQQPRGNMREGRRGGGVGAGGHGGPKTGGPVVILASATSNNPAQHAARLIGDPDVVAVT 259
Query: 467 NDGSPCAQKLFVL--WNPTSCLRSVLNKSQTDM--------------DDTRNA----ANK 506
DGSP ++ +L P L + + D R A ++
Sbjct: 260 EDGSPRGRRTIILTEAGPADSSGGALGEDSGEASGGGTGEGLAADAGDAGRQADVRPGDR 319
Query: 507 TSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELV-LSYTREILEETAPHLVDSICVYRA 565
S +E + L A+ + G R + F +SR ELV L E+ P L + YRA
Sbjct: 320 RRSVTTEAALLMADFLVEGARTLVFTKSRAGAELVALRAQTELARVGRPDLSARVAAYRA 379
Query: 566 GYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSG 625
GY+A DRRRIE+ G+L GVAATNALELGID+G +D + GFPG++AS WQQAGR+G
Sbjct: 380 GYLAADRRRIEQALDDGELLGVAATNALELGIDIGGLDAVITAGFPGTLASFWQQAGRAG 439
Query: 626 RRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLS 685
RR + + +A PLD Y + +P+ L P+E D N +L H++CAALE PL+
Sbjct: 440 RRNQAATVALIASADPLDAYLVHHPDALISRPVEAAVFDPTNPHILAGHVLCAALEAPLT 499
Query: 686 LIYDEKYFGSG------LSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIR 739
+ +F +G ++ G + RGY ++ P + P +S+R
Sbjct: 500 -DREVAWFRAGPVVDRLVADGWLRRRPRGYYAAVPP------------GQPDPHRVVSVR 546
Query: 740 AIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKA 799
E +++ + V+ ++ +A QV+ GAVY+HQG +Y+V EL+L+ +AL
Sbjct: 547 GSGRE-VTIVESATGRVVGTVDAGQAASQVHPGAVYLHQGRSYVVDELSLAEGVALVHGE 605
Query: 800 DLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGI 859
YFT+ T I V +A +++ L + VT Y + G
Sbjct: 606 MPDYFTQALSSTTIRVVSAPDAACDEVAPGLLVANMLVEVTRQVTG-----YAVRDPGGA 660
Query: 860 IFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSG-LHAASHALLHVVPIYVRCN 918
V L +P S ++AV I + V A E G LHA HAL+ ++P+ C+
Sbjct: 661 TLAAVPLGMPPESLVTRAVAITIDPVVLA--ELGIQDVPGTLHAMEHALIGLLPLVATCD 718
Query: 919 FSDLAPECPNPHDSRYFPERILLYDRHPGGTG 950
D+ H P + +YD +PGG G
Sbjct: 719 RWDIGGVSTALHQDTGLPT-VFVYDGYPGGAG 749
>gi|163841481|ref|YP_001625886.1| ATP-dependent helicase [Renibacterium salmoninarum ATCC 33209]
gi|162954957|gb|ABY24472.1| ATP-dependent helicase [Renibacterium salmoninarum ATCC 33209]
Length = 636
Score = 357 bits (917), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 217/625 (34%), Positives = 328/625 (52%), Gaps = 59/625 (9%)
Query: 206 MVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIM 265
++++L +G S+ Q+ HV + AR AV P L A G+ + HQ E+
Sbjct: 16 LLKYLGQGPDSE-QLRHVRFLPARSAVTAPWPSWLHPGVIDAFSEVGVQEPRQHQVEAAE 74
Query: 266 ASLAGKNVVVATMTSSGKSLCYNLPVLEALSH-DLSSSA--------------LYMFPTK 310
+ +G++V++AT T+SGKSL Y LP L+A+ +L A LY+ PTK
Sbjct: 75 LAHSGQHVILATGTASGKSLGYQLPALDAIYRAELGQEASPGRFQAEGDDAVVLYLSPTK 134
Query: 311 ALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYH 370
ALA DQL +L A+ + YDGDT R W+R++A ++ NPDMLH +LP H
Sbjct: 135 ALAADQLSSLRALKLP---GLRAETYDGDTDPSARRWIREHANFVLCNPDMLHFGVLPNH 191
Query: 371 GQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCS 430
+++ F +R+VVIDEAH Y+G FG H A ++RRL R+C+
Sbjct: 192 EWWAKF-------------------FRRLRYVVIDEAHGYRGVFGSHVAALMRRLRRVCA 232
Query: 431 HVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVL 490
+ +GS P F+ ++ATSA P+ L L +++ DGSP W P L V
Sbjct: 233 Y-HGSSPVFIAASATSAQPQTSFGRLIGLPVTAVVE-DGSPHGSTTVAFWEP--ALSEVS 288
Query: 491 NKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILE 550
+ N A + + I+E S+L A++V +R IAF +SR+ E + T+ +LE
Sbjct: 289 GE---------NGAPERRTSIAETSHLLADLVITRVRTIAFIKSRRGAEAISGNTKRLLE 339
Query: 551 ETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGF 610
E L + YR+GY+ E+RR +E GKL GVA+T+ALELGID+ +D L G+
Sbjct: 340 EIDAGLPHRVAAYRSGYLPEERRELETALRSGKLLGVASTSALELGIDISGLDAVLVAGW 399
Query: 611 PGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKV 670
PG+ ASL+QQ GR+GR + +LA +VA + PLD Y + +PE +F P+E D N V
Sbjct: 400 PGARASLFQQFGRAGRAGQEALAAFVASDDPLDTYLVNHPEAIFDVPVEASFFDPGNPFV 459
Query: 671 LEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEK 730
L L AA E PL D FG + + L +GYL P+ + H +
Sbjct: 460 LGPKLCAAAAEIPLGQA-DLALFGDSTEALLAELVAQGYLRRRPA-------GWFWTHPQ 511
Query: 731 MPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLS 790
+ +++R +++ + VL + ++ +Q + GAVY+HQG +YLV+ELN
Sbjct: 512 SAAGLVNLREDGGVPINIVEADTGAVLGTMGSPQSHYQAHAGAVYVHQGLSYLVEELNEE 571
Query: 791 SKIALCQKADLKYFTKTRDYTDIHV 815
A+ ++A ++T RD T I V
Sbjct: 572 DHCAVVRRAWPDFYTTARDVTQIEV 596
>gi|399574241|ref|ZP_10768000.1| helicase with metal-binding cysteine cluster [Halogranum salarium
B-1]
gi|399240073|gb|EJN60998.1| helicase with metal-binding cysteine cluster [Halogranum salarium
B-1]
Length = 773
Score = 357 bits (916), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 242/759 (31%), Positives = 373/759 (49%), Gaps = 55/759 (7%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
++VE LR +GQ+ + AR V++ L SAL+ GI++LY HQA++I
Sbjct: 3 DIVEWLRSRPYYEGQIREHRRVPARDPTFVDV--ELESRLASALEGEGITRLYRHQAKAI 60
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLE-ALSHDLSSSALYMFPTKALAQDQLRAL--L 321
A G NVV+AT T+SGKSL Y +P E A+ H LY+ P AL DQ L L
Sbjct: 61 EAVRDGGNVVLATETASGKSLAYTVPAFERAMDH--GGRTLYLGPQNALVADQEETLSEL 118
Query: 322 AMTKAFDASIDIGVYDGDTTQKDRMWLRDN-ARLLITNPDMLHMSILPYHGQFSRILSNL 380
A F + + + Y G ++ ++ +RD +L++NPDMLH ++LP+ N
Sbjct: 119 ARKLGFGSRVSVAQYTGRLSKTEKRKVRDRMPTVLLSNPDMLHYALLPH---------NH 169
Query: 381 RLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFV 440
RL + F + VV+DE H Y+G FG H AL LRRL R+C Y S P FV
Sbjct: 170 RLWDW---------FFSSLETVVVDEIHGYRGVFGSHVALTLRRLRRICER-YDSYPQFV 219
Query: 441 FSTATSANPREHCMELA--NLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMD 498
+AT NP +H + + S+ L+ D S + +VLWNP + +
Sbjct: 220 CCSATIGNPVDHAARVTGEHESSFTLVDEDASKTGPRNWVLWNPP------------EYE 267
Query: 499 DTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LV 557
+ + S E +F ++V G + +AF R+R+ E + + + L + H
Sbjct: 268 GGGGGSGRRRSSHVETKNIFVDLVAQGYQTLAFTRARQAAERYATDSSKELRQRGEHDAA 327
Query: 558 DSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASL 617
+ Y+A E RR IE G + GV +TNALELG+DVG +D L G+PG+ S
Sbjct: 328 RGVEAYQAALNHERRREIEAGLHAGDVRGVWSTNALELGVDVGGLDAVLLDGYPGTRMSA 387
Query: 618 WQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVC 677
+QQAGR+GR + P+L V V E LDQY +K+PE F + E + +N ++L H+
Sbjct: 388 FQQAGRAGRGDDPALVVMVGGEDQLDQYLLKHPEDFFDADPEQALSNPENDQLLPGHIRS 447
Query: 678 AALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTIS 737
AA E+ LS DE+YFGS ++ L+ G L ++ I + P H +S
Sbjct: 448 AASENWLS-TDDERYFGSLFPDVVSDLEATGRLE---RRETDGGI-RWTNASGSPQHEMS 502
Query: 738 IRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQ 797
+R I+ +++D + N+V+ + S V+ GA+Y HQG +Y V L+L +A Q
Sbjct: 503 LRTIDDREIDLLDSRRNDVIGSLSFSDGLRDVHPGAIYHHQGQSYEVTSLDLDRDVAELQ 562
Query: 798 KADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGS 857
Y+T+ DI V + D + TVTT GF R
Sbjct: 563 PTWADYYTRILSDKDIVVEADLSTKPLSARPD----VQVRFADVTVTTQITGFERRDPKR 618
Query: 858 GIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQN---FSFRSGLHAASHALLHVVPIY 914
G L LP + ++A++ VP V+A + + + F G+HAA H+ + ++P+
Sbjct: 619 GEAIGRESLDLPATTLRTKALYYTVPPDVEAEIRDDHGEWGFNGGIHAAEHSTISLLPLS 678
Query: 915 VRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSK 953
+ C+ D+ P+ + I +YD +PGG G+++
Sbjct: 679 LLCDRGDIG-GISTPYHAHTDRSTIFIYDGYPGGVGITR 716
>gi|84621802|ref|YP_449174.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|84365742|dbj|BAE66900.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
311018]
Length = 831
Score = 357 bits (916), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 234/767 (30%), Positives = 377/767 (49%), Gaps = 102/767 (13%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
I R IP+ + AL++ GIS+LYSHQA++ A+ G++V + T T+SGKSL
Sbjct: 49 IPGRDGRYAPIPEDVPSALADALQARGISQLYSHQADAWAATQRGEHVAIVTPTASGKSL 108
Query: 286 CYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDR 345
CY LPV+ A + + ALY+FPTKALAQDQ+ LL + +A + + +DGDT R
Sbjct: 109 CYTLPVVSA-AMTSGAKALYLFPTKALAQDQVAELLELNRAGELGVKAFTFDGDTPGDAR 167
Query: 346 MWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVID 405
+R + ++++NPDMLH +ILP+H ++++ NLR +VVID
Sbjct: 168 QAIRLHGDIVVSNPDMLHQAILPHHTKWAQFFENLR-------------------YVVID 208
Query: 406 EAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELI 465
E H Y+G FG H +LRRL R+C+ YG+ P F+ +AT NP+ H L + I
Sbjct: 209 EIHTYRGVFGSHVTNVLRRLKRICA-FYGATPQFILCSATIGNPQAHAQALIE-EQVHAI 266
Query: 466 QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHG 525
G+P K +LWNP V+N D+ R +A S+ I+ ++ ++ G
Sbjct: 267 TESGAPTGDKHVLLWNP-----PVVN---ADLG-LRASARSQSNRIARIA------IKSG 311
Query: 526 LRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLC 585
L+ + F ++R + E++ Y ++I + P I YR GY+ +RR +ER G +
Sbjct: 312 LKTLVFAQTRLMVEVLTKYLKDIFDHD-PRKPPRIRAYRGGYLPTERREVERAMRAGTID 370
Query: 586 GVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQY 645
G+ +T+ALELG+D+G +DV + G+PGS+A+ WQ+ GR+GRR++P+L V VA PLDQY
Sbjct: 371 GIVSTSALELGVDIGALDVVILNGYPGSVAATWQRFGRAGRRQQPALGVLVASSQPLDQY 430
Query: 646 FMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLK 705
+++P+ + E +L H+ CAA E P I E FG I L
Sbjct: 431 VVRHPDFFADASPEHARTAPDQPLILFDHIRCAAFELP--FIASEP-FGP-----IDPLV 482
Query: 706 NRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN--EVLEEIEES 763
L+ + +E+I + P+ +S+R++ + V+D +++ E++ S
Sbjct: 483 FLEVLAESEVIHQEGDRWEWIA-DSYPATAVSLRSVADGNFVVVDKSDGKQQIIAEVDYS 541
Query: 764 KAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYT--------DIHV 815
A +YEGA++M Q Y V+ L+ + + A + + Y+T + DYT D V
Sbjct: 542 AAALTLYEGAIHMVQSRPYQVERLDWAGRKAYVTRTHVDYYTDSIDYTKLKVLDRFDGGV 601
Query: 816 SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYES 875
+G +++ ++ + + R + I + V LP +
Sbjct: 602 AGRGDSHHGEVH-------------VVRRVSGYKKIRYYTHENIGYGPVN--LPDQELHT 646
Query: 876 QAVWIQVPQSV--KAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDS- 932
AVW Q+PQ+ KA + + G A++AL V + V + DL N +
Sbjct: 647 TAVWWQLPQATLGKAFASKQDAL-DGFLGAAYALHVVATVAVMADARDLQKAVGNGDGAW 705
Query: 933 --------------------------RYFPERILLYDRHPGGTGVSK 953
+ F + LYD PGG G+S+
Sbjct: 706 CAVADQTGRGQLRGVEEGETATVELLQTFVPTVYLYDNFPGGVGLSE 752
>gi|392408124|ref|YP_006444732.1| helicase family protein with metal-binding cysteine cluster
[Anaerobaculum mobile DSM 13181]
gi|390621260|gb|AFM22407.1| helicase family protein with metal-binding cysteine cluster
[Anaerobaculum mobile DSM 13181]
Length = 757
Score = 357 bits (916), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 237/744 (31%), Positives = 380/744 (51%), Gaps = 73/744 (9%)
Query: 218 GQMVHVEDISARKAVLVEIPDALLDNTK--SALKSTGISKLYSHQAESIMASLAGKNVVV 275
G++ +SA++A P N K + L GI K Y+HQA +I +L+GKNVVV
Sbjct: 22 GEITACVTLSAKQAKFDSWPTV---NPKLVTTLNELGIEKPYTHQARAINLALSGKNVVV 78
Query: 276 ATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGV 335
T T+SGK+LCYN+PV+ ++ D S ALY+FPTKAL+QDQL + +T I
Sbjct: 79 VTPTASGKTLCYNVPVIHSIMEDNSCRALYIFPTKALSQDQLTEISTITNKLGVPISTFT 138
Query: 336 YDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLI 395
YDGDT ++R +R +++TNPDMLH ILP+H ++ ++ NL
Sbjct: 139 YDGDTPPQERAKVRAAGHVVVTNPDMLHTGILPHHTKWIKLFENL--------------- 183
Query: 396 FLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCME 455
R++VIDE H YKG FG H + ++RRL R+CS YGS P+F+ +AT +NP E
Sbjct: 184 ----RYIVIDELHTYKGIFGSHLSNVIRRLKRICS-FYGSSPTFILCSATISNPLELAEA 238
Query: 456 LANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVS 515
L +EL+ DG+P A+K +++NP ++NK S + +
Sbjct: 239 LIE-EHVELVAEDGAPRAEKQVLIYNP-----PLINKE----------LGIRGSSLLATA 282
Query: 516 YLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEE--TAPHLVDSICVYRAGYVAEDRR 573
+ A+ + +G+ I F RSR EL+L+Y R L + +LV YR GY+ +RR
Sbjct: 283 EIAAQAIANGISTIVFTRSRLNVELLLTYIRNNLRDLRMDENLVSG---YRGGYLPNERR 339
Query: 574 RIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLA 633
+IE+D G + GV +T+ALELGID+G + + + G+PGSI+S WQQ GR+GRR S A
Sbjct: 340 KIEKDLKNGNILGVVSTSALELGIDIGSLSLAVIHGYPGSISSAWQQIGRAGRRSGGSAA 399
Query: 634 VYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYF 693
+ VA PLDQ+ P+ F E I+ N + H+ C+A E L+ DE +
Sbjct: 400 ILVASSNPLDQFIAAKPDYFFGGSPELARINPNNLYIYVDHVKCSAFE--LNFAQDEPF- 456
Query: 694 GSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQS 753
G ++ L+ YL+ L + + + + P+ IS+R+ +E Y VID+
Sbjct: 457 --GKTNPKEVLE---YLTQYDVLHFAGSRY-FWQSDSFPAQGISLRSATNENYTVIDVTE 510
Query: 754 N---EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDY 810
N +V+ E++ A ++ A+Y H G Y V EL+ ++ + Y+T
Sbjct: 511 NHKPKVIGEVDRPSAPMLIHPEAIYFHDGKPYQVIELDTKGLRCYVKQVSVDYYTDADLA 570
Query: 811 TDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPK 870
+ V + K++ + L + T + +L + + ++++ +
Sbjct: 571 VRLQV--------LDVFKEEDQWGLGEVL-LSFRPTVYKKIKLMTHENVGYG--QIHMDE 619
Query: 871 YSYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNP 929
+ A W+++ Q +A+ E+N S SGL SH + P+++ C+ D++
Sbjct: 620 EEMHTTACWLKLEKQYSEALGEENLS--SGLLGVSHLFRAIAPLFLMCDRGDISVHH-MV 676
Query: 930 HDSRYFPERILLYDRHPGGTGVSK 953
D + I + D PGG G+++
Sbjct: 677 RDPMFEKPVIYIADNVPGGVGLAE 700
>gi|357420397|ref|YP_004933389.1| DEAD/DEAH box helicase [Thermovirga lienii DSM 17291]
gi|355397863|gb|AER67292.1| DEAD/DEAH box helicase domain protein [Thermovirga lienii DSM
17291]
Length = 793
Score = 357 bits (916), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 242/754 (32%), Positives = 382/754 (50%), Gaps = 80/754 (10%)
Query: 218 GQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVAT 277
G++ + + ++A PD L + K AL+ GI KLYSHQA++I + GKNVV+AT
Sbjct: 60 GKVCTLREFPPQEASWARWPD-LDERLKKALEKRGIQKLYSHQADAIRMIMEGKNVVLAT 118
Query: 278 MTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYD 337
T+SGKSLCYN+PVL+A+ + S AL+MFPTKAL+QDQ+ L + + + YD
Sbjct: 119 PTASGKSLCYNVPVLDAIMKNPDSRALFMFPTKALSQDQMAGLHQLIELSGVDVKTFTYD 178
Query: 338 GDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFL 397
GDT R LR ++ITNPDML+ ILP+H ++ ++ NL
Sbjct: 179 GDTPVAARQKLRAAGHIVITNPDMLNTGILPHHTKWIKLFENL----------------- 221
Query: 398 FIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELA 457
R+VVIDE H YKG FG H A ++RRL R+CS YGS P+F+ S+AT +NP+E EL
Sbjct: 222 --RYVVIDELHTYKGVFGSHVANLIRRLKRICS-FYGSKPTFIGSSATISNPKEL-SELL 277
Query: 458 NLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYL 517
+ +I G+P + FV++NP V+N+ S ++E + +
Sbjct: 278 LEEPVHVITESGAPRGPRKFVIYNP-----PVVNEQ----------LGIRKSSLTETAKI 322
Query: 518 FAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICV--YRAGYVAEDRRRI 575
AE V + + I F RSR EL+++Y R L +D+ V YR GY+ +RR I
Sbjct: 323 AAEAVANNISTIVFTRSRVNVELLVTYLRRALISKG---LDASKVEGYRGGYLPNERRAI 379
Query: 576 ERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVY 635
ER G++ V +TNALELGID+G +++ + G+PGSIAS+WQQ GR+GR S A+
Sbjct: 380 ERKLREGEITCVVSTNALELGIDIGSLELAILHGYPGSIASMWQQIGRAGRSMGLSAAIM 439
Query: 636 VAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGS 695
VA +DQ+ PE LF + E I++ N +L H+ C+A E P EK+
Sbjct: 440 VASSFAMDQFLASRPEYLFGASPERARINSDNLYILANHVKCSAFELPFH--QGEKFGNK 497
Query: 696 GLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNE 755
+S + L+ +G +L S + F + + P+ ++S+R+ SE + +ID+
Sbjct: 498 DISEILEYLRQKG------TLHKSGEKF-FWQEDSFPAESLSLRSATSENFVIIDITETA 550
Query: 756 ---VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTD 812
V+ E++ A ++ A+Y H G TY V +L+ ++ ++ Y+T D
Sbjct: 551 KPVVIGEVDRPSAPMLIHPEAIYFHGGKTYQVMKLDYDGMRCYVKQVEVDYYTD----AD 606
Query: 813 IHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYS 872
+ V + T + +Q + T + +L + + ++LP+
Sbjct: 607 MAVR-----FQTIDTLEQQGHWGLGEILMASRPTIYKKIKLHTHENLGYG--HIHLPEEQ 659
Query: 873 YESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLA-------PE 925
+ A W++VP V S L S+ L P+++ C D+ P
Sbjct: 660 MHTTACWLKVPTGVVWEGWDENRQSSALTGLSNLLRSTAPLFLMCARHDIIIHGLVKDPF 719
Query: 926 CPNPHDSRYFPERILLYDRHPGGTGVSKQVTDMK 959
+P + + D +PGG G+++ ++K
Sbjct: 720 LESP--------AVYIADNYPGGIGLAEGAFELK 745
>gi|381172382|ref|ZP_09881511.1| DEAD/DEAH box helicase family protein [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
gi|380687126|emb|CCG37998.1| DEAD/DEAH box helicase family protein [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
Length = 831
Score = 357 bits (915), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 235/758 (31%), Positives = 377/758 (49%), Gaps = 106/758 (13%)
Query: 235 EIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEA 294
++P AL D AL++ GIS+LYSHQA++ A+ G++V + T T+SGKSLCY LPV+ A
Sbjct: 62 DVPGALAD----ALQARGISQLYSHQADAWAATQRGEHVAIVTPTASGKSLCYTLPVVSA 117
Query: 295 LSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARL 354
+ + ALY+FPTKALAQDQ+ LL + +A + + +DGDT R +R + +
Sbjct: 118 -AMTSGAKALYLFPTKALAQDQVAELLELNRAGELGVKAFTFDGDTPGDARQAIRLHGDI 176
Query: 355 LITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAF 414
+++NPDMLH +ILP+H ++++ NLR +VVIDE H Y+G F
Sbjct: 177 VVSNPDMLHQAILPHHTKWAQFFENLR-------------------YVVIDEIHTYRGVF 217
Query: 415 GCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQ 474
G H +LRRL R+C+ YG+ P F+ +AT NP H L + I G+P
Sbjct: 218 GSHVTNVLRRLKRICA-FYGATPQFILCSATIGNPHAHAQALIE-EQVHGITESGAPTGD 275
Query: 475 KLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRS 534
K +LWNP V+N D+ R +A S+ I+ ++ ++ GL+ + F ++
Sbjct: 276 KHVLLWNP-----PVVN---ADLG-LRASARSQSNRIARIA------IKSGLKTLVFAQT 320
Query: 535 RKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALE 594
R + E++ Y ++I + P I YR GY+ +RR +ER G + G+ +T+ALE
Sbjct: 321 RLMVEVLTKYLKDIFDHD-PRKPARIRAYRGGYLPTERREVERAVRAGNIDGIISTSALE 379
Query: 595 LGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLF 654
LG+D+G +DV + G+PGS+A+ WQ+ GR+GRR++P+L V VA PLDQY +++P+
Sbjct: 380 LGVDIGALDVVILNGYPGSVAATWQRFGRAGRRQQPALGVLVASSQPLDQYVVRHPDFFA 439
Query: 655 KSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDP 714
+ E +L H+ CAA E P I DE FG I L L+
Sbjct: 440 DASPEHARTAPDQPLILFDHIRCAAFELP--FIADEP-FGP-----IDPLVFLEALAESE 491
Query: 715 SLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN--EVLEEIEESKAFFQVYEG 772
+ +E+I + P++ +S+R++ + V+D +++ E++ S A +YEG
Sbjct: 492 VIHQEGDRWEWIA-DSYPANAVSLRSVADGNFVVVDKSDGKQQIIAEVDYSAAALTLYEG 550
Query: 773 AVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYT--------DIHVSGGNNAYAT 824
A++M Q Y V+ L+ + A + + Y+T + DYT D V+G +++
Sbjct: 551 AIHMVQSTPYQVERLDWEGRKAYVTRTHVDYYTDSIDYTKLKVLDRFDGGVAGRGDSHHG 610
Query: 825 KISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQ 884
++ + + R + I + V LP + AVW Q+PQ
Sbjct: 611 EVH-------------VVRRVSGYKKIRYYTHENIGYGPVN--LPDQELHTTAVWWQLPQ 655
Query: 885 SV--KAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRY-------- 934
+ KA + + G A++AL V + V + DL N + +
Sbjct: 656 ATLGKAFASKQDAL-DGFLGAAYALHVVATVAVMADARDLQKAVGNGDGAWFAVADQTGR 714
Query: 935 -------------------FPERILLYDRHPGGTGVSK 953
F + LYD PGG G+S+
Sbjct: 715 GQLRGVEEGEHATVELQQAFVPTVYLYDNFPGGVGLSE 752
>gi|239918293|ref|YP_002957851.1| helicase family protein with metal-binding cysteine cluster
[Micrococcus luteus NCTC 2665]
gi|281415512|ref|ZP_06247254.1| helicase family protein with metal-binding cysteine cluster
[Micrococcus luteus NCTC 2665]
gi|239839500|gb|ACS31297.1| helicase family protein with metal-binding cysteine cluster
[Micrococcus luteus NCTC 2665]
Length = 865
Score = 357 bits (915), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 234/744 (31%), Positives = 364/744 (48%), Gaps = 56/744 (7%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATM 278
Q+ HV ++ AR+A P + A + G+ + + HQ + + AG + V+AT
Sbjct: 85 QIRHVTELPARQARHTGWPADAPEGLVRAFAARGVERPWLHQVRAATLAGAGTHTVLATG 144
Query: 279 TSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDG 338
T+SGKSL Y L V L+ D ++ALY+ PTKALA DQL + A+ + + YDG
Sbjct: 145 TASGKSLGYQLAVGTRLAADPRATALYLAPTKALAADQLTSWRALERDGAPGLRAAPYDG 204
Query: 339 DTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLF 398
DT +DR+W R++A +L+TNPDMLH+ ILP+H +++ NL
Sbjct: 205 DTAPQDRIWAREHATVLMTNPDMLHVGILPHHERWAAFFRNLA----------------- 247
Query: 399 IRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVF--STATSANPREHCMEL 456
FVV+DE+H Y+G FG ++LRRL R+ +H G P VF ++ATSA+P H L
Sbjct: 248 --FVVVDESHTYRGVFGSQVGILLRRLRRIATHYRGDRPETVFIGASATSADPAGHFARL 305
Query: 457 ANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTR--NAANKTSSPISEV 514
+ + D SP W P ++ D R N A S ++
Sbjct: 306 IG-APATAVTEDASPHGAVTVAFWEP-------------ELTDRRGENGAPVRRSAMAAA 351
Query: 515 SYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRR 574
+ L ++ +R +AF RSR+ E + S + LEE P L I YR+GY+ E+RR
Sbjct: 352 ADLVTDLALQQVRTLAFIRSRRGAEAIASAAKRQLEEVEPGLGTRIAAYRSGYLPEERRE 411
Query: 575 IERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAV 634
+E D G+L G+A+T ALE+GIDV +D + G+PG+ AS +QQ GR+GR + +LA
Sbjct: 412 LEADLRSGRLLGMASTPALEMGIDVAGLDAVVVAGWPGTRASFFQQIGRAGRGGQDALAF 471
Query: 635 YVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFG 694
+VA + PLD + + +PE +F +E +D +N +L L AA E P++ +FG
Sbjct: 472 FVASDDPLDTFVVDHPEAVFDLGVEDTVVDPENPHLLGPQLCAAAAELPIT-PEAFGWFG 530
Query: 695 SG--LSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQ 752
+ + + L +G L P+ + H + + +S+R ++ID +
Sbjct: 531 EPERVRALLDVLVEQGLLRRRPA-------GWFWTHPEHAAGMVSLRDDGGGPMDIIDAE 583
Query: 753 SNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTD 812
S +L ++ + +Q + GAVY+HQ TYLV+EL+ + + +A + T+ RD T+
Sbjct: 584 SGALLGTMDSPQTHYQAHPGAVYVHQDRTYLVEELDEDAHAVVVTRAWPDFTTQARDVTE 643
Query: 813 IHVSGGNNAYATKISKDQLTKTTAQALA-CTVTTTWFGFYRLWRGSGIIFDTVELYLPKY 871
I + A D T L V T F R SG + L LP
Sbjct: 644 IEI------VAVHRRLDAREGTLRWCLGDVQVRTQVVSFQRKALVSGEVLGEEPLNLPAR 697
Query: 872 SYESQAVWIQVP-QSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPH 930
+ AVW Q + A LHAA HA++ ++P+ + D+ H
Sbjct: 698 DLFTSAVWFQAASDELIAAGLTTDRLPGALHAAEHAMIGMMPLVASNDRWDIGGVSMVLH 757
Query: 931 DSRYFPERILLYDRHPGGTGVSKQ 954
P + +YD PGG G +++
Sbjct: 758 PDTGSPA-VFVYDGRPGGAGFAER 780
>gi|389810829|ref|ZP_10206036.1| Distinct helicase family with a unique C-terminal domain including
a metal-binding cysteine cluster [Rhodanobacter
thiooxydans LCS2]
gi|388440537|gb|EIL96906.1| Distinct helicase family with a unique C-terminal domain including
a metal-binding cysteine cluster [Rhodanobacter
thiooxydans LCS2]
Length = 802
Score = 357 bits (915), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 231/765 (30%), Positives = 372/765 (48%), Gaps = 99/765 (12%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
+ R+ +PD L AL+S GI +LYSHQAE+ A+ +G +V + T T+SGKSL
Sbjct: 42 VPGREGSYASLPDDLPPALAQALRSRGIERLYSHQAEAWAATQSGSHVAIVTPTASGKSL 101
Query: 286 CYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDR 345
CY LPV+ A + + ALY+FPTKALAQDQ+ LL + +A + +DGDT R
Sbjct: 102 CYTLPVVTA-AMTQRAKALYLFPTKALAQDQVAELLELNQAGGLGVKAFTFDGDTPGDAR 160
Query: 346 MWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVID 405
+R + ++++NPDMLH +ILP+H ++++ NLR +VVID
Sbjct: 161 QAIRLHGDIVVSNPDMLHQAILPHHTKWAQFFENLR-------------------YVVID 201
Query: 406 EAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELI 465
E H Y+G FG H A ++RRL R+C+ YG P F+ +AT NP+EH L + I
Sbjct: 202 EVHTYRGVFGSHVANVIRRLKRVCA-FYGVTPQFILCSATIGNPQEHAEALIE-DAVTAI 259
Query: 466 QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHG 525
G+P K +LWNP V+N D+ R +A ++ I+ ++ ++ G
Sbjct: 260 TESGAPTGDKHVLLWNP-----PVVNP---DLG-LRASARSQTNRIARLA------IKSG 304
Query: 526 LRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLC 585
++ + F +SR + E++ Y +++ + P I YR GY+ ++RR ER+ G +
Sbjct: 305 MKTLVFAQSRTMVEVLTKYLKDVFDHD-PRKPARIRAYRGGYLPKERRAAEREMRAGTID 363
Query: 586 GVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQY 645
G+ +T+ALELG+D+G +DV + G+PGS+A+ WQ+ GR+GRR++ +L V VA PLDQY
Sbjct: 364 GIVSTSALELGVDIGGLDVVVLNGYPGSVAATWQRFGRAGRRQQSALGVLVASSDPLDQY 423
Query: 646 FMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLK 705
+++PE +P E I +L H+ CAA E P + DE + + + L
Sbjct: 424 LVRHPEFFQDAPPEHARIQPDQPLILLDHIRCAAFELP--FVGDEMFGTEVTTPWLDVLG 481
Query: 706 NRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNE--VLEEIEES 763
G L + +E+I + P+ +S+R++ + V+D + ++ E++ +
Sbjct: 482 EEGVLHRE------GDRWEWIA-DSYPAIAVSLRSVADGNFVVVDRTNGRQTIIAEVDYT 534
Query: 764 KAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHV-------- 815
A +YEGA++M Q Y V+ L+ + + A + + Y+T DYT + V
Sbjct: 535 AAPVTLYEGAIHMIQSVPYQVERLDWAGRKAYVTRTQVDYYTDAIDYTKLKVLDCFDTSD 594
Query: 816 SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYES 875
+G A+ ++ + R + I + V LP +
Sbjct: 595 AGCGQAHHGEVH-------------VVRRVPGYKKIRFYSHENIGYGPVN--LPDQELHT 639
Query: 876 QAVWIQVPQSV-KAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRY 934
AVW Q+ V A E G A++AL V + V DL + + +
Sbjct: 640 TAVWWQLAAVVLDAAFEDRQQALDGFLGAAYALHIVATVAVMAEARDLQKSVGSGDGTWF 699
Query: 935 --------------------------FPERILLYDRHPGGTGVSK 953
F + LYD PGG G+S+
Sbjct: 700 VSADLSGRGQIRGIDGQPAALAANAPFTPTVYLYDAFPGGIGLSE 744
>gi|359427287|ref|ZP_09218357.1| putative ATP-dependent helicase [Gordonia amarae NBRC 15530]
gi|358237351|dbj|GAB07939.1| putative ATP-dependent helicase [Gordonia amarae NBRC 15530]
Length = 685
Score = 356 bits (914), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 228/678 (33%), Positives = 341/678 (50%), Gaps = 61/678 (8%)
Query: 285 LCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIG-----VYDGD 339
+ Y LP+L AL D +++ALY+ PTKAL DQ+RA+ +T A S + G YDGD
Sbjct: 1 MAYQLPILTALLTDPTATALYLAPTKALGADQIRAVAELTSA---SPEFGHLQPCAYDGD 57
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T + R W R ++R + TNPDMLH+ IL H ++ NLR
Sbjct: 58 TEPEIRQWARAHSRWIFTNPDMLHVGILSGHTRWRHFFRNLR------------------ 99
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
+VV+DE H Y+G FG HTAL+LRRL R+ + G+ P + S+AT A P + L
Sbjct: 100 -YVVLDECHHYRGVFGSHTALVLRRLLRV-ARAAGAAPVVIASSATVARPAQSLSRLIGE 157
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
+ + +DGSP ++ LW P + +V + N A S +E + L A
Sbjct: 158 PAVA-VTDDGSPHGERTVALWQP-GFVPAVSGE---------NGAPVRRSAGAESARLLA 206
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDF 579
+ V G R + F RSR EL R++L AP LV + YRAGY+A+DRRR+ER
Sbjct: 207 DFVIEGARTLCFTRSRVGAELTARQARQLLAAAAPDLVGKVAAYRAGYLADDRRRLERAI 266
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERP--SLAVYVA 637
+L GVA TNALELG+D+ +D + G+PGS+AS WQQAGR+GR+ SL V VA
Sbjct: 267 NDAELTGVATTNALELGVDISGLDAVIVAGYPGSVASFWQQAGRAGRQHHSGDSLVVLVA 326
Query: 638 FEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGL 697
+ PLD Y + +PE L P+E D N +L HL+CAA E PL+ + + +
Sbjct: 327 RDDPLDTYLVHHPETLLDKPVEAAVTDPGNPYILGPHLLCAAAELPLTERDVDDWDARTV 386
Query: 698 SSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVL 757
+ L RG L + Y+G P IS+R + ++D ++ +L
Sbjct: 387 ---VDDLTARGELKRR-------RAGWYVGAGIEPHAQISLRGGSGDEVLIVDTTTSRLL 436
Query: 758 EEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSG 817
++ +A VY GAV++HQG T++V EL+L +AL + + T R+ T I +
Sbjct: 437 GTVDAVRAMSTVYAGAVHIHQGETFVVDELDLDDGLALTHPEEPDWTTSARERTGITLG- 495
Query: 818 GNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQA 877
IS+ + T VT G+ R +G + D+V L +P+ + ++A
Sbjct: 496 ------RIISERKYGPLTVAFAEVEVTHQVIGYLRTLL-TGEVLDSVPLDMPEQTLPTRA 548
Query: 878 V-WIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFP 936
V + P+++ LHAA HA + ++P+ C+ D+ H P
Sbjct: 549 VLYTLTPEALADAGIDPARVPGALHAAEHAAIGLLPLVATCDRGDIGGLSTTAHPGTGLP 608
Query: 937 ERILLYDRHPGGTGVSKQ 954
+ +YD H GG G +++
Sbjct: 609 T-VFVYDGHLGGAGFAER 625
>gi|338535101|ref|YP_004668435.1| DEAD-box ATP dependent DNA helicase [Myxococcus fulvus HW-1]
gi|337261197|gb|AEI67357.1| DEAD-box ATP dependent DNA helicase [Myxococcus fulvus HW-1]
Length = 782
Score = 356 bits (913), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 233/756 (30%), Positives = 376/756 (49%), Gaps = 74/756 (9%)
Query: 224 EDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGK 283
E AR V IP+ + + AL+ G+ +L+SHQAE+ + AG+++V+AT T+SGK
Sbjct: 22 EATPARAGVFAPIPEEVAPQVREALEQRGVQQLFSHQAEAYRLARAGRSLVIATPTASGK 81
Query: 284 SLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQK 343
SLCYNLP+L+ + + + ALY+FPTKAL++DQ +L A+ + S +DGDT
Sbjct: 82 SLCYNLPLLDRFAREPQARALYLFPTKALSRDQEESLRALMREAGLSHGAITFDGDTPAD 141
Query: 344 DRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVV 403
R R+ + +L+TNPDMLH ILP+H ++R+ SNL R+VV
Sbjct: 142 ARRAARERSGVLLTNPDMLHTGILPHHASWARLFSNL-------------------RYVV 182
Query: 404 IDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLE 463
IDE H Y+G FG H A +LRRL R+ + +G+DP F+ ++AT NP H + +
Sbjct: 183 IDELHTYRGVFGSHLANVLRRLQRV-ARFHGADPVFIAASATIGNPEAHARRMLG-RDVT 240
Query: 464 LIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQ 523
L+ G+P ++ +++NP V+N +S + L A++V+
Sbjct: 241 LVSESGAPSGERRVMVFNP-----PVVNAE----------LGIRASYLKTAVRLTADLVR 285
Query: 524 HGLRCIAFCRSRKLCELVLSYTRE--ILEETAPHLVDSICVYRAGYVAEDRRRIERDFFG 581
G+ + F +SR E++L Y R+ + E+ P L+ YR GY+ RR E
Sbjct: 286 AGVSTLLFGQSRNNIEVMLKYLRDRFVEEKLDPSLIQG---YRGGYLPGTRRATEAALRA 342
Query: 582 GKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGP 641
G++ V ATNALELGID+G +D + G+PGS+A+L Q+ GR+GRR SLA+ V P
Sbjct: 343 GEVRCVVATNALELGIDIGSLDAVVCAGYPGSVAALMQRFGRAGRRGEGSLALLVTSSAP 402
Query: 642 LDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGI 701
LDQY P L SP+E ID N ++L QHL CA+ E P + + FG
Sbjct: 403 LDQYLAGDPRFLVGSPVEHARIDPDNVEILVQHLKCASFELPFE---EGEPFGDVPPE-- 457
Query: 702 TTLKNRGYLSS----DPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVL 757
+T + G+L+ P++ + + + + P++ +S+R++ + +I+ ++ L
Sbjct: 458 STTEALGFLAQHEVVHPTIGEAGRRVFHWSTDAYPANHVSLRSVGWDNVVIIEKGTDRTL 517
Query: 758 EEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSG 817
E++ A ++E A+Y H+ Y V+ + + A +K YFT Y +HV
Sbjct: 518 AEMDFRSAHTMLHEQAIYQHEAEQYQVERFDYENHKAFVRKVAPDYFTDAMTYVRVHV-- 575
Query: 818 GNNAYATKISKDQLTKTTAQALA----CTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSY 873
I +DQ A +V G+ ++ + ++ LP+
Sbjct: 576 --------IQEDQAAPIGPDLQAGMGEVSVIEKVVGYKKIKYHTHENVGYGDVALPEMQM 627
Query: 874 ESQAVWIQVPQSV--------KAVVEQNFSFRSGLHAASHALLHVVP--IYVRCNFSDLA 923
+ A+W+ VP++V AV++ + L + L + P I D A
Sbjct: 628 HTTALWLTVPETVVRAMRAPRPAVIDALRGLTTALRTVACVGLMIDPRDIGKTLGSRDDA 687
Query: 924 PECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDMK 959
P F + LYD PGG G++ ++ D +
Sbjct: 688 EGPPRKDGGVGFDPTLFLYDNVPGGVGLAARLYDQR 723
>gi|384417210|ref|YP_005626570.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzicola
BLS256]
gi|353460124|gb|AEQ94403.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzicola
BLS256]
Length = 831
Score = 355 bits (912), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 232/767 (30%), Positives = 377/767 (49%), Gaps = 102/767 (13%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
I R IP+ + AL++ GIS+LYSHQA++ A+ G++V + T T+SGKSL
Sbjct: 49 IPGRDGRYASIPEDVPSALADALQARGISQLYSHQADAWAATQRGEHVAIVTPTASGKSL 108
Query: 286 CYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDR 345
CY LPV+ A + + ALY+FPTKALAQDQ+ LL + +A + + +DGDT R
Sbjct: 109 CYTLPVVSA-AMTSGAKALYLFPTKALAQDQVAELLELNRAGELGVKAFTFDGDTPGDAR 167
Query: 346 MWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVID 405
+R + ++++NPDMLH +ILP+H ++++ NLR +VVID
Sbjct: 168 QAIRLHGDIVVSNPDMLHQAILPHHTKWAQFFENLR-------------------YVVID 208
Query: 406 EAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELI 465
E H Y+G FG H +LRRL R+C+ YG+ P F+ +AT NP+ H L + I
Sbjct: 209 EIHTYRGVFGSHVTNVLRRLKRICA-FYGATPQFILCSATIGNPQAHAQALIE-EQVHAI 266
Query: 466 QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHG 525
G+P K +LWNP V+N D+ R +A S+ I+ ++ ++ G
Sbjct: 267 TESGAPTGDKHVLLWNP-----PVVN---ADLG-LRASARSQSNRIARIA------IKSG 311
Query: 526 LRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLC 585
L+ + F ++R + E++ Y ++I + P I YR GY+ +RR +ER G +
Sbjct: 312 LKTLVFAQTRLMVEVLTKYLKDIFDHD-PRKPPRIRAYRGGYLPTERREVERAMRAGTID 370
Query: 586 GVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQY 645
G+ +T+ALELG+D+G +DV + G+PGS+A+ WQ+ GR+GRR +P+L V VA PLDQY
Sbjct: 371 GIVSTSALELGVDIGALDVVILNGYPGSVAATWQRFGRAGRRRQPALGVLVASSQPLDQY 430
Query: 646 FMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLK 705
+++P+ + E +L H+ CAA E P I E + G + L+
Sbjct: 431 VVRHPDFFADASPEHARTAPDQPLILFDHIRCAAFELP--FIASEPF---GPIDPVVFLE 485
Query: 706 NRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN--EVLEEIEES 763
L+ + +E+I + P++ +S+R++ + V+D +++ E++ S
Sbjct: 486 A---LAESEVIHQEGDRWEWIA-DSYPANAVSLRSVADGNFVVVDKSDGKQQIIAEVDYS 541
Query: 764 KAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYT--------DIHV 815
A +YEGA++M Q Y V+ L+ + A + + Y+T + DYT D V
Sbjct: 542 AAALTLYEGAIHMVQSTPYQVERLDWEGRKAYVTRTHVDYYTDSIDYTKLKVLDRFDGGV 601
Query: 816 SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYES 875
+G +++ ++ + + R + I + V LP +
Sbjct: 602 AGRGDSHHGEVH-------------VVRRVSGYKKIRYYTHENIGYGPVN--LPDQELHT 646
Query: 876 QAVWIQVPQSV--KAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDS- 932
AVW Q+PQ+ KA + + G A++AL V + V + DL N +
Sbjct: 647 TAVWWQLPQATLGKAFASKQDAL-DGFLGAAYALHVVATVAVMADARDLQKAVGNGDGAW 705
Query: 933 --------------------------RYFPERILLYDRHPGGTGVSK 953
+ F + LYD PGG G+S+
Sbjct: 706 CAVADQTGRGQLRGVEEGETATVELQQTFVPTVYLYDNFPGGVGLSE 752
>gi|313126257|ref|YP_004036527.1| helicase with metal-binding cysteine cluster [Halogeometricum
borinquense DSM 11551]
gi|448286098|ref|ZP_21477333.1| helicase with metal-binding cysteine cluster [Halogeometricum
borinquense DSM 11551]
gi|312292622|gb|ADQ67082.1| helicase family protein with metal-binding cysteine cluster
[Halogeometricum borinquense DSM 11551]
gi|445575149|gb|ELY29628.1| helicase with metal-binding cysteine cluster [Halogeometricum
borinquense DSM 11551]
Length = 800
Score = 355 bits (912), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 242/778 (31%), Positives = 372/778 (47%), Gaps = 67/778 (8%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
+++E LR +GQM + +R ++ AL +SAL GI +LY HQAE+I
Sbjct: 3 DLIEWLRDRPYYEGQMRDHRRVPSRDPEFADV--ALESRLQSALSDRGIDRLYRHQAEAI 60
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLE-ALSHDLSSSALYMFPTKALAQDQLRAL--L 321
A G+NVV+AT T+SGKSL Y +P E A+ H LY+ P AL DQ L L
Sbjct: 61 DAVRDGENVVLATQTASGKSLAYTVPAFERAMDH--GGRTLYLGPQNALIADQDETLSDL 118
Query: 322 AMTKAFDASIDIGVYDGDTTQKDRMWLRDN-ARLLITNPDMLHMSILPYHGQFSRILSNL 380
A T F + + + Y G ++ ++ +RD +L++NPDMLH ++LP+
Sbjct: 119 AFTLGFGSRVSVEQYTGRLSKTEKRDVRDRRPTVLLSNPDMLHYALLPH---------AH 169
Query: 381 RLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFV 440
RL + F + VVIDE H Y+G FG H AL LRRL R+C + SDP +V
Sbjct: 170 RLWEW---------FFSSLETVVIDEIHGYRGVFGSHVALTLRRLNRICER-FDSDPQYV 219
Query: 441 FSTATSANPREHCMELANL--STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMD 498
+AT NP EH + + ++ L+ D S +VLWNP S +
Sbjct: 220 CCSATIGNPVEHAARVTGMEQASFRLVDEDTSGTGATHWVLWNPPEYRESGRGE------ 273
Query: 499 DTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAP-HLV 557
+ + SS + E LF +++ G + +AF R+R+ E + + E L E
Sbjct: 274 ---ESGRRRSSHV-ETKNLFVDLLSRGHQTLAFTRARQAAERYATESAEDLRERGESEAA 329
Query: 558 DSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASL 617
+ Y+A E RR+IE G + GV +TNALELG+DVG +D L G+PG+ S
Sbjct: 330 AGVSAYQAALKHEKRRKIESGLHDGSVTGVWSTNALELGVDVGGLDAVLIDGYPGTRMSA 389
Query: 618 WQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVC 677
+QQAGR+GR + +L + V E LDQY + +PE+ + E + N ++L H+
Sbjct: 390 FQQAGRAGRGDDDALVILVGGEDQLDQYLLHHPEEFWDGEPERAICNPTNEELLPDHVAS 449
Query: 678 AALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTIS 737
AA E+ L D+++FG ++ L+ G L + D G P H +S
Sbjct: 450 AAAENWLK-PDDDRHFGETTPDVVSALETAGRLDRRETDDGIRWTHSGSG---SPQHEMS 505
Query: 738 IRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQ 797
+R+IES +++D +SNEV+ + A + GA+Y HQG +Y V EL+L A+ Q
Sbjct: 506 LRSIESREVDLLDGRSNEVIASLSFGDALRDAHPGAIYHHQGQSYEVTELDLDRDTAILQ 565
Query: 798 KADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGS 857
Y+T+ I V + D T + T+ GF R
Sbjct: 566 PTWADYYTRVLHDKTITVEEDLRSKPLSARPD----TEVRFADVTMRKQITGFERRDPKR 621
Query: 858 GIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQ------------------NFSFRSG 899
G L LP+ + ++A+++ VP+ V+A + ++ F G
Sbjct: 622 GEAIGRESLNLPETTLRTKALYVTVPRDVEAQMRAMGDETREDGAGQYELSGGDYGFAGG 681
Query: 900 LHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTD 957
+HAA H ++ + P+ C+ D+ PH + I +YD HPGG G+++ D
Sbjct: 682 IHAAEHGMISLFPLSFLCDRGDIGG-LSTPHHTHTDQSTIFVYDGHPGGVGLTENGYD 738
>gi|108758894|ref|YP_632015.1| DEAD-box ATP dependent DNA helicase [Myxococcus xanthus DK 1622]
gi|108462774|gb|ABF87959.1| ATP-dependent helicase, DEAD/DEAH box family [Myxococcus xanthus DK
1622]
Length = 779
Score = 355 bits (912), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 235/756 (31%), Positives = 376/756 (49%), Gaps = 74/756 (9%)
Query: 224 EDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGK 283
E AR V IP+ + + AL+ GI +L+SHQAE+ + AG+++V+AT T+SGK
Sbjct: 19 EATPARAGVFAPIPEEVAPQVRDALEKRGIQQLFSHQAEAYRLARAGQSLVIATPTASGK 78
Query: 284 SLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQK 343
SLCYNLP+L+ + + + ALY+FPTKAL++DQ +L A+ + S +DGDT
Sbjct: 79 SLCYNLPLLDRFAREPQARALYLFPTKALSRDQEESLRALMREAGLSHGAITFDGDTPAD 138
Query: 344 DRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVV 403
R R+ + +L+TNPDMLH ILP+H ++R+ SNL R+VV
Sbjct: 139 ARRAARERSGVLLTNPDMLHTGILPHHASWARLFSNL-------------------RYVV 179
Query: 404 IDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLE 463
IDE H Y+G FG H A +LRRL R+ + +G+DP FV ++AT NP H + +
Sbjct: 180 IDELHTYRGVFGSHLANVLRRLQRV-ARFHGADPVFVAASATIGNPEAHARRMLG-RDVT 237
Query: 464 LIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQ 523
L+ G+P ++ +++NP V+N +S + L A++V+
Sbjct: 238 LVSESGAPSGERRVMVFNP-----PVVNAE----------LGIRASYLKTAVRLTADLVR 282
Query: 524 HGLRCIAFCRSRKLCELVLSYTRE--ILEETAPHLVDSICVYRAGYVAEDRRRIERDFFG 581
G+ + F +SR E++L Y R+ + E+ P L+ YR GY+ RR E
Sbjct: 283 AGVSTLLFGQSRNNIEVMLKYLRDRFVEEKLDPSLIQG---YRGGYLPGTRRATEAALRA 339
Query: 582 GKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGP 641
G++ V ATNALELGID+G +D + G+PGS+A+L Q+ GR+GRR SLA+ V P
Sbjct: 340 GEVRCVVATNALELGIDIGSLDAVVCAGYPGSVAALMQRFGRAGRRGEGSLALLVTSSAP 399
Query: 642 LDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGI 701
LDQY P L SP+E ID N ++L QHL CA+ E P + + FG
Sbjct: 400 LDQYLAGDPRFLVGSPVEHARIDPDNVEILVQHLKCASFELPFE---EGEPFGDVPPE-- 454
Query: 702 TTLKNRGYLSS----DPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVL 757
+T + G+L+ P++ + + + + P++ +S+R++ + +I+ ++ L
Sbjct: 455 STTEALGFLAQHEVVHPTVGEAGRRVFHWSTDAYPANHVSLRSVGWDNVVIIEKGTDRTL 514
Query: 758 EEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSG 817
E++ A ++E A+Y H+ Y V+ + + A +K YFT Y +HV
Sbjct: 515 AEMDFRSAHTMLHEQAIYQHEAEQYQVERFDYENHKAFVRKVAPDYFTDAMTYVRVHV-- 572
Query: 818 GNNAYATKISKDQLTKTTAQALA----CTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSY 873
I +DQ A +V G+ ++ + ++ LP+
Sbjct: 573 --------IQEDQAAPMGPDLQAGMGEVSVIEKVVGYKKIKYHTHENVGYGDVALPEMQM 624
Query: 874 ESQAVWIQVPQSV--------KAVVEQNFSFRSGLHAASHALLHVVP--IYVRCNFSDLA 923
+ A+W+ VP++V AV++ + L + L + P I D A
Sbjct: 625 HTTALWLTVPETVVRAMRAPRPAVIDALRGLTTALRTVACVGLMIDPRDIGKTLGSRDDA 684
Query: 924 PECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDMK 959
P F + LYD PGG G++ ++ D +
Sbjct: 685 EGPPRKDGGVGFDPTLFLYDNVPGGVGLAARLYDQR 720
>gi|451819761|ref|YP_007455962.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451785740|gb|AGF56708.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 887
Score = 355 bits (911), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 241/762 (31%), Positives = 387/762 (50%), Gaps = 76/762 (9%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+++ + I R+A+ V P L + L GI KLY HQAE + G N+V+ T T
Sbjct: 7 IIYNKTIPKREAIYVNYPSNLSQELCTYLSQKGIEKLYCHQAEMFEKADEGNNIVITTST 66
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDAS-IDIGVYDG 338
+SGK+L + LPV++ + + + A++++PTKALA DQ RA+L + F A+ I GVYDG
Sbjct: 67 ASGKTLSFLLPVIQEILSNPLARAIFIYPTKALASDQYRAILPYLEYFGANRISAGVYDG 126
Query: 339 DTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLF 398
DT +R +R NA +++TNP+M++ + LP H +F IF
Sbjct: 127 DTPVNERSRIRKNANIILTNPEMINAAFLPNHSKFG-----------------FEFIFSN 169
Query: 399 IRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELAN 458
+++VVIDE H Y+GAFG H A + RRL R+C + Y S P ++ S+AT ANP E E+
Sbjct: 170 LKYVVIDELHTYRGAFGSHLANVFRRLGRVCRY-YNSVPKYLCSSATIANPVELAEEICG 228
Query: 459 LSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLF 518
+E + DGSP +K F L P + +D + S+ ++ + L
Sbjct: 229 QKFIE-VHKDGSPAPKKNFKLVQPPKIMG----------NDKKYYGQLQSTSVA--AELI 275
Query: 519 AEMVQHGLRCIAFCRSRKLCELVLSYTREILEET---APHLVDSICVYRAGYVAEDRRRI 575
++V++ IAF +SR+ E++L R+ LE L D I YR GY +R+ I
Sbjct: 276 PDLVENDNSFIAFAKSRRNVEVILKEARDKLETEVFFGGSLKDKISGYRGGYTPLERKEI 335
Query: 576 ERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVY 635
E G L G+ +TNALELGID+G ID T+ +G+PG+ AS WQQ+GR+GR S Y
Sbjct: 336 ENKMITGVLRGLVSTNALELGIDIGKIDTTVIVGYPGTRASFWQQSGRAGRSGMESTN-Y 394
Query: 636 VAFEG-PLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFG 694
+ F+ P DQY P+ LF+ E ID N + H+ AA E PL+L D+
Sbjct: 395 LIFDNLPFDQYIAINPDWLFEGGSENAVIDKNNLLIELAHIRAAAAEIPLTL--DDIDVF 452
Query: 695 SGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN 754
L I L L+ + S K F + G+ P+ S+R I+ +RY++I+ ++N
Sbjct: 453 PDLGETIPVLIRASELA-----NQSGK-FAWCGN-SFPAGDFSLRNIDKKRYKLINKENN 505
Query: 755 EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIH 814
+ + E++E +AF +V+ GA+YMH Y V +L+L S+ A + Y+T T+I
Sbjct: 506 KEITEMDEMQAFREVHNGAIYMHDSVQYQVVKLDLESRTAFAIPFNGNYYTMPGGITNIR 565
Query: 815 VSGGNNAYATKISKD---QLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKY 871
+ G SKD + TK T + + + + F+ ++ L K
Sbjct: 566 IIQG--------SKDVDYERTKVTFGDVNVDDIVYMYKKLQFHNHQNLGFEQLDKPLSK- 616
Query: 872 SYESQAVWIQVPQSV------------KAVVEQNFSFRSGLHAASHALLHVVPIY---VR 916
+++++ WI++P++V ++ +N F A +A + +
Sbjct: 617 DFDTESTWIKIPENVVNVYRRLLQESQNGMIIRNNHFEGVCFAIKNATMMATMTEQEDIG 676
Query: 917 CNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDM 958
S+ A E +D + + +YD++ GG G +++V D+
Sbjct: 677 VTMSNNAVEIRENYDREVY---MFVYDKYVGGLGYAEKVFDL 715
>gi|429729820|ref|ZP_19264475.1| putative DEAH-box helicase [Corynebacterium durum F0235]
gi|429148830|gb|EKX91828.1| putative DEAH-box helicase [Corynebacterium durum F0235]
Length = 697
Score = 355 bits (910), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 231/719 (32%), Positives = 353/719 (49%), Gaps = 135/719 (18%)
Query: 217 QGQMVHVEDISARKAVLVEIPD-ALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVV 275
QG H+ + AR A E P+ A++ + + KLY HQAE+ + G++VV+
Sbjct: 18 QGTCTHMVTLPARPARYAEWPEWAVVRD---------VDKLYEHQAEAAQRAWNGEHVVL 68
Query: 276 ATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGV 335
AT TSSGKSL Y LPV+ L +D ++ ALY+ PTKAL DQL ++ +A
Sbjct: 69 ATGTSSGKSLAYQLPVITTLLNDPTACALYITPTKALGSDQLTSIRHDVQA-------AP 121
Query: 336 YDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLI 395
YDGDT R +RD AR + TNPDMLH +IL H Q+ R+
Sbjct: 122 YDGDTPIDARRHIRDAARWVFTNPDMLH-TILLNHKQWQRL------------------- 161
Query: 396 FLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCME 455
F +++VV+DE HAY+G FG H AL+LRRL R+ +H YGS P+F F++ATSA+P H
Sbjct: 162 FRHLKYVVVDECHAYRGVFGAHVALVLRRLRRIAAH-YGSHPTFFFASATSADPAAHASR 220
Query: 456 LANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVS 515
L L + + +D SP + +LW P S +++ +
Sbjct: 221 LLGLP-VTAVTDDASPAGARTIMLWQPDK------------------------SAVADAA 255
Query: 516 YLFAEMVQHGLRCIAFCRSRKLCELV-LSYTREILEETAPHLVDSICVYRAGYVAEDRRR 574
A + G R + F RSR+ E+V L E+ P L + YR+GY+AEDRR+
Sbjct: 256 GFMATSIAEGARTLGFVRSRRQAEIVALRCAEELAMMGRPDLAHRVASYRSGYLAEDRRK 315
Query: 575 IERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAV 634
+ER G+L GVA+TNALELGIDVG +D + G+PG++AS WQQAGR+GRR + +LA
Sbjct: 316 LERMLDSGELLGVASTNALELGIDVGGLDTVIISGYPGTVASFWQQAGRAGRRGQGALAA 375
Query: 635 YVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFG 694
++A + PLD Y + +PE L P+E D N VL H++ AA+E PL+
Sbjct: 376 FIARDDPLDTYLVHHPEALLDRPLEQHVFDPTNPFVLRTHMLAAAVEIPLT--------- 426
Query: 695 SGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIES-------ERYE 747
+ D + + K+ E + EK+ H A+E+
Sbjct: 427 ----------------AEDIAEFHAEKVVEELVAEKLMRHRKRWYAMEAPATLRGGSEVA 470
Query: 748 VIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKT 807
++D +L I+ ++A Q + GAVY+HQG ++++ L+ +AL + ++ T
Sbjct: 471 IVDSTDGRLLGTIDRARAMTQTHPGAVYLHQGESFVIDSLD--DDLALAHPEEPEWTTYA 528
Query: 808 RDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELY 867
R +I + + + + + + T Q +
Sbjct: 529 RTTKNIRILDEVSDWISNVD----VEVTEQVIG--------------------------- 557
Query: 868 LPKYSYESQAVWIQVPQSV---KAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLA 923
Y+ +S+ + + +P V +AVV LHAA HA + ++P++ C+ DL
Sbjct: 558 ---YTRDSEIIPLDMPPQVLKTRAVVFTAHGSPGALHAAEHAAIGLLPLFATCDRWDLG 613
>gi|390991213|ref|ZP_10261483.1| DEAD/DEAH box helicase family protein [Xanthomonas axonopodis pv.
punicae str. LMG 859]
gi|372554022|emb|CCF68458.1| DEAD/DEAH box helicase family protein [Xanthomonas axonopodis pv.
punicae str. LMG 859]
Length = 832
Score = 354 bits (909), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 234/758 (30%), Positives = 375/758 (49%), Gaps = 105/758 (13%)
Query: 235 EIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEA 294
++P AL D + A GIS+LYSHQA++ A+ G++V + T T+SGKSLCY LPV+ A
Sbjct: 62 DVPGALADALQEA---RGISQLYSHQADAWAATQRGEHVAIVTPTASGKSLCYTLPVVSA 118
Query: 295 LSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARL 354
+ + ALY+FPTKALAQDQ+ LL + +A + + +DGDT R +R + +
Sbjct: 119 -AMTSGAKALYLFPTKALAQDQVAELLELNRAGELGVKAFTFDGDTPGDARQAIRLHGDI 177
Query: 355 LITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAF 414
+++NPDMLH +ILP+H ++++ NLR +VVIDE H Y+G F
Sbjct: 178 VVSNPDMLHQAILPHHTKWAQFFENLR-------------------YVVIDEIHTYRGVF 218
Query: 415 GCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQ 474
G H +LRRL R+C+ YG+ P F+ +AT NP H L + I G+P
Sbjct: 219 GSHVTNVLRRLKRICA-FYGATPQFILCSATIGNPHAHAQALIE-EQVHGITESGAPTGD 276
Query: 475 KLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRS 534
K +LWNP V+N D+ R +A S+ I+ ++ ++ GL+ + F ++
Sbjct: 277 KHVLLWNP-----PVVN---ADLG-LRASARSQSNRIARIA------IKSGLKTLVFAQT 321
Query: 535 RKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALE 594
R + E++ Y ++I + P I YR GY+ +RR +ER G + G+ +T+ALE
Sbjct: 322 RLMVEVLTKYLKDIFDHD-PRKPARIRAYRGGYLPTERREVERAMRAGNIDGIISTSALE 380
Query: 595 LGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLF 654
LG+D+G +DV + G+PGS+A+ WQ+ GR+GRR++P+L V VA PLDQY +++P+
Sbjct: 381 LGVDIGALDVVILNGYPGSVAATWQRFGRAGRRQQPALGVLVASSQPLDQYVVRHPDFFA 440
Query: 655 KSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDP 714
+ E +L H+ CAA E P I DE FG I L L+
Sbjct: 441 DASPEHARTAPDQPLILFDHIRCAAFELP--FIADEP-FGP-----IDPLVFLEALAESE 492
Query: 715 SLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN--EVLEEIEESKAFFQVYEG 772
+ +E+I + P++ +S+R++ + V+D +++ E++ S A +YEG
Sbjct: 493 VIHQEGDRWEWIA-DSYPANAVSLRSVADGNFVVVDKSDGKQQIIAEVDYSAAALTLYEG 551
Query: 773 AVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYT--------DIHVSGGNNAYAT 824
A++M Q Y V+ L+ + A + + Y+T + DYT D V+G +++
Sbjct: 552 AIHMVQSTPYQVERLDWEGRKAYVTRTHVDYYTDSIDYTKLKVLDRFDGGVAGRGDSHHG 611
Query: 825 KISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQ 884
++ + + R + I + V LP + AVW Q+PQ
Sbjct: 612 EVH-------------VVRRVSGYKKIRYYTHENIGYGPVT--LPDQELHTTAVWWQLPQ 656
Query: 885 SV--KAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRY-------- 934
+ KA + + G A++AL V + V + DL N + +
Sbjct: 657 ATLGKAFASKQDAL-DGFLGAAYALHVVATVAVMADARDLQKAVGNGDGAWFAVADQTGR 715
Query: 935 -------------------FPERILLYDRHPGGTGVSK 953
F + LYD PGG G+S+
Sbjct: 716 GQLRGVEEGEHATVELQQAFVPTVYLYDNFPGGVGLSE 753
>gi|225377488|ref|ZP_03754709.1| hypothetical protein ROSEINA2194_03136 [Roseburia inulinivorans DSM
16841]
gi|225210680|gb|EEG93034.1| hypothetical protein ROSEINA2194_03136 [Roseburia inulinivorans DSM
16841]
Length = 884
Score = 354 bits (909), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 246/766 (32%), Positives = 383/766 (50%), Gaps = 86/766 (11%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+++ + I A AV + P+ LL LK GI KLY HQ E +GKNVV+ T T
Sbjct: 7 IIYEKTIPAHPAVYDDFPENLLPELAGYLKEHGIEKLYCHQTEMFEKVTSGKNVVITTST 66
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAF-DASIDIGVYDG 338
+SGK+L + LPVL+ + + + A++++PTKALA DQ RA+ + F + I GVYDG
Sbjct: 67 ASGKTLSFLLPVLQDILKNPLTRAIFIYPTKALAADQYRAIAPYLEYFGENRIVAGVYDG 126
Query: 339 DTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQ--FSRILSNLRLIAFSLVTTEVYLIF 396
DT +R +R +A +++TNP+M++ + LP H + F I SNL+
Sbjct: 127 DTPVAERTRIRQSANIILTNPEMVNGAFLPNHSKYGFDFIFSNLK--------------- 171
Query: 397 LFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMEL 456
++VIDE H Y+GAFG H A + RRL R+C + Y S+P F+ S+AT ANP E E+
Sbjct: 172 ----YIVIDELHTYRGAFGSHLANVFRRLSRVCRY-YHSNPQFLCSSATIANPVELATEI 226
Query: 457 ANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSY 516
L+ DGSP A++ + L P + DD + ++ +E
Sbjct: 227 CG-KQFTLVDKDGSPAAERGYYLIQPPKIMGK---------DDNYYGQVRITTVAAE--- 273
Query: 517 LFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETA---PHLVDSICVYRAGYVAEDRR 573
L E++ G IAF +SRK E+VL TR+ LE H D I YR GY +R+
Sbjct: 274 LLPELMDEGKNFIAFTKSRKNVEIVLKETRDHLEAEGFLGTHKPDEISGYRGGYTPLERK 333
Query: 574 RIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLA 633
+IE G+L G+ +TNALELGID+G I T+ +G+PG+ AS WQQ GR+GR + S
Sbjct: 334 QIENQMISGELMGLVSTNALELGIDIGKISTTVLVGYPGTRASFWQQTGRAGRSGKRSSN 393
Query: 634 VYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYF 693
+ P DQY P LF+ E ID N + H+ AA E PL+L D+
Sbjct: 394 YLILDNQPFDQYIALEPGWLFEGSSENAVIDKNNLIIELAHIRAAAAEIPLTL--DDISL 451
Query: 694 GSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQS 753
L I L LSS + K F + G E P+ S+R I+ +RY+++ S
Sbjct: 452 FPDLGEAIPVLLRAEELSS-----HNGK-FAWSGGE-FPAGDFSMRNIDEKRYKLLHKDS 504
Query: 754 NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDI 813
+ + E++ES+AF ++++GAVYMH G Y V +L+L S+ A + Y+T
Sbjct: 505 GKEITEMDESQAFRELHDGAVYMHDGVAYQVTKLDLESRTAYAVPFNGNYYTVA------ 558
Query: 814 HVSGGNNAYATKISKDQ-LTKTTAQALACTVTTTWFGFYRLW--RGSGIIFDTVELYLPK 870
+G N SK+ L +T V+ + F ++ + ++ + L K
Sbjct: 559 --AGEANVKIVHESKNMPLARTELHFGDVNVSDYVYMFKKMQFHNHQNLGYEQLPKALSK 616
Query: 871 YSYESQAVWIQVPQSV----KAVVEQN---------------FSFRSGLHAASHALLHVV 911
Y++++ W++VP++V + +++ N F+ ++ + +
Sbjct: 617 -DYDTESTWMRVPENVVRVYRGLIQVNENTKMVRNNYYEGVCFALKNAARMVTMTEQEDI 675
Query: 912 PIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTD 957
+ N +LA + + D I YD++ GG G S+++ D
Sbjct: 676 GVITSANALELAFDTSSDVD-------IYFYDKYVGGLGFSEKIYD 714
>gi|162452179|ref|YP_001614546.1| nucleotidyltransferase [Sorangium cellulosum So ce56]
gi|161162761|emb|CAN94066.1| Nucleotidyltransferase [Sorangium cellulosum So ce56]
Length = 800
Score = 354 bits (908), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 239/762 (31%), Positives = 375/762 (49%), Gaps = 94/762 (12%)
Query: 236 IPDALLDNTKSALKSTGISKLYSHQ--------------AESIMASLAGKNVVVATMTSS 281
+PDAL + AL+ GI +LY HQ + + + AG++VVVAT T+S
Sbjct: 45 MPDALSPALRGALERRGIDRLYDHQARAFAAARAKPTGPSAAAEPARAGRHVVVATPTAS 104
Query: 282 GKSLCYNLPVLEALSHDLSS----SALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYD 337
GKSLC++LPVL+AL+ +S SA+Y++PTKALA+DQ L A+ + +I VYD
Sbjct: 105 GKSLCFHLPVLDALAEGAASGQGGSAIYLYPTKALARDQEAGLHALIREAGLTIPAIVYD 164
Query: 338 GDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFL 397
GDT R R+ + +++TNPDMLH ILP+H ++R LR
Sbjct: 165 GDTPGDARRAARERSPIVMTNPDMLHAGILPHHAHWARTFQRLR---------------- 208
Query: 398 FIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELA 457
+VV+DE H Y+G FG H A +L RL R+ + +GS P+F+ +TAT NPR H L
Sbjct: 209 ---YVVLDELHTYRGVFGSHVAHVLARLRRVAA-FHGSSPTFLCATATIGNPRAHAARLL 264
Query: 458 NLST--LELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVS 515
++ LELI G+P + F L+NP V+N T +A +
Sbjct: 265 GIAEDELELIDESGAPRGPRRFFLYNP-----PVVNAELGVRASTLKSAVR--------- 310
Query: 516 YLFAEMVQHGLRCIAFCRSRKLCELVLSYTRE-ILEETAPHLVDSICVYRAGYVAEDRRR 574
L ++ + + + F +SR E++L Y RE + +E D+I YR GY+ E RRR
Sbjct: 311 -LAGDLARARVPTLVFGQSRNSVEIMLKYLREGVGKEIGAE--DAIMAYRGGYLPETRRR 367
Query: 575 IERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAV 634
+ER G++ V ATNALELGID+G +D + G+PGS+A WQ+ GR+GRR + S+AV
Sbjct: 368 VERGLREGEILCVVATNALELGIDIGELDAVICAGYPGSVAETWQRFGRAGRRGKTSIAV 427
Query: 635 YVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFG 694
A LDQY + P L + E ID QN ++L QHL CAA E P + E Y
Sbjct: 428 LCATSAALDQYLARNPGYLLERGAESARIDPQNTEILVQHLKCAAFELP--FLKGEPYAA 485
Query: 695 SGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN 754
+ L+ +L + + S F + + P++ +S+R++ + + +ID
Sbjct: 486 MAPDDTVAALR---FLQDNGVVHESNDRFHW-ATDAYPANHVSLRSVGWDNFVIIDKALG 541
Query: 755 EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIH 814
+ L E++ A ++E A+Y H G Y V+ L+ + A K YFT + +
Sbjct: 542 KTLAELDWRAAPTMLHEQAIYQHDGEQYQVERLDYENHKAFVTKVVPDYFTTALTHRKVS 601
Query: 815 VSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVE------LYL 868
+ + A L + TA ++ G+ + I F T E + L
Sbjct: 602 ILDESAAA-------PLGRATAAFGEVSIVEKVVGYKK------IKFYTHENTGYGDVRL 648
Query: 869 PKYSYESQAVWIQVPQSV-KAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECP 927
P + + W+ VP+ + + + + GL + AL V + + C+ D+
Sbjct: 649 PDIQMHTTSFWLTVPEPLCEELGLGRATAIDGLRGIARALETVATLSLMCDPRDIGQTLE 708
Query: 928 NPHDSRYFP----------ERILLYDRHPGGTGVSKQVTDMK 959
+ ++R P + L+D PGG G+S+++ + +
Sbjct: 709 DGSEAREVPAGGEAAGVFDPTLFLFDNVPGGVGLSERIYEQR 750
>gi|380510475|ref|ZP_09853882.1| Distinct helicase family with a unique C-terminal domain including
a metal-binding cysteine cluster [Xanthomonas sacchari
NCPPB 4393]
Length = 837
Score = 353 bits (907), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 235/760 (30%), Positives = 377/760 (49%), Gaps = 89/760 (11%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
I + IPD + +AL+ GI++LYSHQAE+ A+ G++V + T T+SGKSL
Sbjct: 49 IPGQAGRYAPIPDDVPPALAAALRERGIAQLYSHQAEAWDAAQRGEHVAIVTPTASGKSL 108
Query: 286 CYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDR 345
CY LPV+ A + ALY+FPTKALAQDQ+ LL + +A D + +DGDT R
Sbjct: 109 CYTLPVVAAAMT-AQAKALYLFPTKALAQDQVAELLDLNRAGDLGVKAFTFDGDTPGDAR 167
Query: 346 MWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVID 405
+R + ++++NPDMLH +ILP+H ++++ NLR +VVID
Sbjct: 168 QAIRLHGDIVVSNPDMLHQAILPHHTKWAQFFENLR-------------------YVVID 208
Query: 406 EAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELI 465
E H Y+G FG H A +LRRL R+C+ YG P F+ +AT NPR H L + I
Sbjct: 209 EIHTYRGVFGSHVANVLRRLKRICA-FYGVTPQFILCSATIGNPRAHAEALIE-QRVHAI 266
Query: 466 QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHG 525
+ G+P K +LWNP V+N D+ R +A S+ I+ ++ ++ G
Sbjct: 267 TDSGAPSGDKHVLLWNP-----PVVN---ADLG-LRASARSQSNRIARIA------IKSG 311
Query: 526 LRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLC 585
L+ + F ++R + E++ Y ++I + P I YR GY+ +RR ER G +
Sbjct: 312 LKTLVFAQTRLMVEVLTKYLKDIFDHD-PRKPPRIRAYRGGYLPSERREAERAMRAGSID 370
Query: 586 GVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQY 645
G+ +T+ALELG+D+G +DV + G+PGS+A+ WQ+ GR+GRR++P+L V VA PLDQY
Sbjct: 371 GIVSTSALELGVDIGALDVVVLNGYPGSVAATWQRFGRAGRRQQPALGVLVASSQPLDQY 430
Query: 646 FMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLK 705
+++P+ + E I +L H+ CAA E L+ + E + G L+
Sbjct: 431 VVRHPDFFADASPEHARIAPDQPLILFDHIRCAAFE--LTFVAGEAF---GPVDPAVFLE 485
Query: 706 NRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN--EVLEEIEES 763
L+ + +E+I + P++ +S+R++ + V+D +++ E++ S
Sbjct: 486 A---LAESEVVHQEGDRWEWIA-DSYPANAVSLRSVADGNFVVVDKTDGKQQIIAEVDYS 541
Query: 764 KAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYA 823
A +YEGA++M Q Y V++L+ + A + + Y+T + D+T + V
Sbjct: 542 AAALTLYEGAIHMVQSTPYQVEKLDWEGRKAYVTRTHVDYYTDSIDFTKLKV-------L 594
Query: 824 TKISKDQLTKTTAQALACTVTTTWFGF--YRLWRGSGIIFDTVELYLPKYSYESQAVWIQ 881
+ + A V G+ R + I + V LP + AVW Q
Sbjct: 595 DRFDGGAAGRGDAHHGEVHVVRRVAGYKKIRYYTHENIGYGPVN--LPDQELHTTAVWWQ 652
Query: 882 VPQS--VKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPEC------------- 926
+PQ+ +KA + + G A++AL V + V + DL
Sbjct: 653 LPQATLLKAFGSKQDAL-DGFLGAAYALHVVATVAVMADARDLQQAVGDGDGAWFAVADA 711
Query: 927 -------------PNPHDSRYFPERILLYDRHPGGTGVSK 953
P + + F + LYD PGG G+S+
Sbjct: 712 KGRGQLRGGDSGEPASVELQQFVPTVYLYDNFPGGVGLSE 751
>gi|336427050|ref|ZP_08607055.1| hypothetical protein HMPREF0994_03061 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336010252|gb|EGN40238.1| hypothetical protein HMPREF0994_03061 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 899
Score = 353 bits (906), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 230/679 (33%), Positives = 343/679 (50%), Gaps = 60/679 (8%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+ + ++ AR+A+ + P+ +L + LK GIS LY HQAE + GKN+V+ T T
Sbjct: 7 ITYTKEYPAREAIYSDFPEDMLPELSAYLKKQGISGLYCHQAEMFEKAQEGKNLVITTST 66
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAF-DASIDIGVYDG 338
+SGK+L + LPVL+ + D + A++++PTKALA DQ RA+L + F + I GVYDG
Sbjct: 67 ASGKTLSFLLPVLQEILKDPLARAVFIYPTKALAADQYRAILPVIDYFGENRISAGVYDG 126
Query: 339 DTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQ--FSRILSNLRLIAFSLVTTEVYLIF 396
DT +R +R NA L++TNP+ML+ + LP H + F I SNL+
Sbjct: 127 DTPASERSRIRKNANLILTNPEMLNGAFLPNHSRYGFDFIFSNLK--------------- 171
Query: 397 LFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMEL 456
FVVIDE H Y+GAFG H A + RRL R+C + Y S P F+ S+AT ANP E E+
Sbjct: 172 ----FVVIDELHTYRGAFGSHLANVFRRLGRICRY-YRSSPRFLCSSATIANPVELAEEI 226
Query: 457 ANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSY 516
I DGSP + +V P + D +N +S+ ++ S+
Sbjct: 227 CG-QEFTRISRDGSPAGPRRYVFLQPPAI----------KGKDGKNYGQVSSTEVA--SH 273
Query: 517 LFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEE---TAPHLVDSICVYRAGYVAEDRR 573
L ++V+ IAF +SR+ E+VL + +ILE + D I YR GY +R+
Sbjct: 274 LIPQLVEAERSFIAFTKSRRNVEVVLKESSDILESESFSGTGRKDKISGYRGGYTPNERK 333
Query: 574 RIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLA 633
IE G L G+ +TNALELGID+G I+ T+ +G+PG+ AS WQQ GR+GR + +
Sbjct: 334 EIENKMVSGALTGLISTNALELGIDIGKIESTVLVGYPGTRASFWQQTGRAGRNGKGCVN 393
Query: 634 VYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYF 693
+ P DQY P+ LF E +D N + H+ AA E PL+L D+
Sbjct: 394 YLILENLPFDQYVAVNPDWLFGGESETAIVDKNNLLIELVHIRAAAAEMPLTL--DDIAL 451
Query: 694 GSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQS 753
L I L +DS F + G P+ S+R I+ RY++I+ ++
Sbjct: 452 FPDLGEAIPVLLKV------KEVDSRDGKFAWSGG-AFPAGDFSLRNIDKARYKLINQEN 504
Query: 754 NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDI 813
+ E++E +AF +++EGAVYMH G Y V L+ ++IA Q Y+T T+I
Sbjct: 505 GREITEMDEMQAFREIHEGAVYMHDGVQYQVTSLDRETRIASAQPFFGNYYTMPGGGTEI 564
Query: 814 HVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYR---LWRGSGIIFDTVELYLPK 870
V S+D T + T YR + F+ + L K
Sbjct: 565 SV--------IHSSRDTDYGRTRISFGDVNVHTMVSIYRKLQFHNHQNLGFEQLPEPLSK 616
Query: 871 YSYESQAVWIQVPQSVKAV 889
++++ WI +P +V V
Sbjct: 617 -DFDTEGAWIAIPDNVSVV 634
>gi|424796805|ref|ZP_18222479.1| putative ATP-dependent helicase [Xanthomonas translucens pv.
graminis ART-Xtg29]
gi|422794756|gb|EKU23580.1| putative ATP-dependent helicase [Xanthomonas translucens pv.
graminis ART-Xtg29]
Length = 832
Score = 353 bits (906), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 233/760 (30%), Positives = 378/760 (49%), Gaps = 89/760 (11%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
+ R IPD + + +ALK+ GI++LYSHQAE+ A+ G++V + T T+SGKSL
Sbjct: 49 LPGRAGRYAPIPDDVPEALVAALKARGIAQLYSHQAEAWDAAQRGEHVAIVTPTASGKSL 108
Query: 286 CYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDR 345
CY LPV+ A + ALY+FPTKALAQDQ+ LL + +A + + +DGDT R
Sbjct: 109 CYTLPVVAAAMT-AQAKALYLFPTKALAQDQVAELLELNRAGELGVKAFTFDGDTPGDAR 167
Query: 346 MWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVID 405
+R + ++++NPDMLH +ILP+H ++++ NLR +VVID
Sbjct: 168 QAIRLHGDIVVSNPDMLHQAILPHHTKWAQFFENLR-------------------YVVID 208
Query: 406 EAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELI 465
E H Y+G FG H +LRRL R+C+ YG +P F+ +AT NPR H L + I
Sbjct: 209 EIHTYRGVFGSHVTNVLRRLKRICA-FYGVNPQFILCSATIGNPRAHAEALIE-QRVHAI 266
Query: 466 QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHG 525
G+P K +LWNP V+N D+ R +A S+ I+ ++ ++ G
Sbjct: 267 TESGAPSGDKHVLLWNP-----PVVN---ADLG-LRASARSQSNRIARIA------IKSG 311
Query: 526 LRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLC 585
L+ + F ++R + E++ Y ++I + P I YR GY+ +RR ER G +
Sbjct: 312 LKTLVFAQTRLMVEVLTKYLKDIFDHD-PRKPPRIRAYRGGYLPTERREAERAMRAGSID 370
Query: 586 GVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQY 645
G+ +T+ALELG+D+G +DV + G+PGS+A+ WQ+ GR+GRR++PSL V VA PLDQY
Sbjct: 371 GIVSTSALELGVDIGSLDVVVLNGYPGSVAATWQRFGRAGRRQQPSLGVLVASSQPLDQY 430
Query: 646 FMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLK 705
+++P+ + E I +L H+ CAA E L+ + E + G L+
Sbjct: 431 VVRHPDFFADASPEHARIAPDQPLILFDHIRCAAFE--LTFVAGEAF---GPVDPAVFLE 485
Query: 706 NRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN--EVLEEIEES 763
L+ + +E+I + P++ +S+R++ + V+D +++ E++ S
Sbjct: 486 A---LAESEVVHQEGDRWEWIA-DSYPANAVSLRSVADGNFVVVDKTDGKQQIIAEVDYS 541
Query: 764 KAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYA 823
A +YEGA++M Q Y V++L+ + A + + Y+T + D+T + V
Sbjct: 542 AAALTLYEGAIHMVQSTPYQVEKLDWEGRKAYVTRTHVDYYTDSIDFTKLKV-------L 594
Query: 824 TKISKDQLTKTTAQALACTVTTTWFGF--YRLWRGSGIIFDTVELYLPKYSYESQAVWIQ 881
+ + + V G+ R + I + V LP + AVW Q
Sbjct: 595 DRFDGGAAGRGDSHHGEVHVVRRVAGYKKIRYYTHENIGYGPVT--LPDQELHTTAVWWQ 652
Query: 882 VPQS--VKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRY----- 934
+PQ+ +KA + + G A++AL V + V + DL + + +
Sbjct: 653 LPQATLLKAFAAKQDAL-DGFLGAAYALHVVATVAVMADARDLQKAVGDGDGAWFAMADA 711
Query: 935 ---------------------FPERILLYDRHPGGTGVSK 953
F + LYD PGG G+S+
Sbjct: 712 KGRGQLRGGDTGEPVGVELQQFVPTVYLYDNFPGGVGLSE 751
>gi|190344667|gb|EDK36392.2| hypothetical protein PGUG_00490 [Meyerozyma guilliermondii ATCC 6260]
Length = 1154
Score = 352 bits (904), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 251/782 (32%), Positives = 380/782 (48%), Gaps = 116/782 (14%)
Query: 256 LYSHQAESIMASLAGKN-VVVATMTSSGKSLCYNLPVLEALSHDLS---------SSALY 305
LYSHQ+E++ + LA KN +V+T TSSGKSL Y +P++ + DL S+A +
Sbjct: 289 LYSHQSEALKSILAHKNHTIVSTSTSSGKSLIYQIPIVNEILWDLEENSKANKRRSTAFF 348
Query: 306 MFPTKALAQDQLRALLAMTKAFDAS----IDIGVYDGDTTQKDRMWLRDNARLLITNPDM 361
+FPTKALAQDQLR L + A ++ I I YDGDT + R +R A ++ TNPD
Sbjct: 349 IFPTKALAQDQLRHLQNLISALPSNSKRQIIIDAYDGDTPAESRSRIRRFADIIFTNPDT 408
Query: 362 LHMSILPYHGQ---------FSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKG 412
+H SILP H + LSNL+ FVV+DE H YKG
Sbjct: 409 IHASILPNHSGYSYSDSSDGWKDFLSNLK-------------------FVVVDELHVYKG 449
Query: 413 AFGCHTALILRRLCRLCSHV---YGSDPSFVFSTATSANPREHCMELANLSTLEL---IQ 466
FG + ++ RL R+ + + D FV +AT +NP H + + + E I
Sbjct: 450 TFGVNIRYVMSRLQRIHAKITEHLSKDIIFVSCSATVSNPPSHFRAICGIHSSEHVMHIH 509
Query: 467 NDGSPCAQKLFVLWNPTSCL--RSVLNKSQTDMDDTRNAANKTSSPISEVS-----YLFA 519
DGSPC++K V+WNP + R + + NK +S V L
Sbjct: 510 QDGSPCSEKKLVVWNPPPLMNKRGQTQSQLQSSSEV-SITNKFIPRVSSVEESARLLLHL 568
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREIL-EETAPHLVDS-ICVYRAGYVAEDRRRIER 577
++ I FC R +CEL++ R +L ++ P++ S I YR GY DRR IE+
Sbjct: 569 LSKLPTIKVILFCPIRAVCELIMKEVRSLLSQQKWPNVQSSDIMSYRGGYSKSDRRLIEQ 628
Query: 578 DFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS--GRRERPSLAVY 635
F G+L + ATNALELGID+ +D+ + GF GS ++L QQ GR+ GR SLA+Y
Sbjct: 629 KMFSGQLRAIVATNALELGIDLADLDIVIACGFSGSKSNLHQQFGRAGRGRDSNGSLAIY 688
Query: 636 VAFEGPLDQYFMK-YPEKLFKSPIECCHID-----AQNHKVLEQHLVCAALEHPLSLIYD 689
V+ P+DQY++K Y E KS E ++ Q +LE HL CAA E P+ L +D
Sbjct: 689 VSGSSPVDQYYLKNYMELCDKSEYEDLCVEGLIEIGQAQLILESHLQCAAFEWPIDLEHD 748
Query: 690 EKYFGSG-----------LSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISI 738
K+F L N G ++P+ + P SI
Sbjct: 749 MKWFTFNDSAKQQNQYVELCRTKLVTDNLGRYRTNPT------------YLPWPVDHCSI 796
Query: 739 RAIESERYEVIDMQS--NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALC 796
R ++ Y V+D+ N V+EE+EES+ F +YEG +++HQG +YLVKE N K +
Sbjct: 797 RHVDDNVYAVVDITDGRNVVIEEVEESRTSFTLYEGGIFLHQGVSYLVKEFNTEEKYSKV 856
Query: 797 QKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRG 856
Q+ ++ + T RDY+D+ + + + T FG+++L R
Sbjct: 857 QRVEVDWTTSQRDYSDVDPIEIEVVKCLRSPLNFINDIPVFYGKILTTIKVFGYFKLNRK 916
Query: 857 SGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQ-NFSFRSGLHAASHALLHVVPIYV 915
+ I+ + V++ P +S+ WI +P+ +++ S G+HAA HA+++++P+++
Sbjct: 917 AEIL-EAVDVANPPVFLKSKGFWIDIPEKALLLIQDLKLSPAGGVHAAQHAIMNILPLFI 975
Query: 916 --------------RCNFSDLAPECPNPHD-------SRYFPERILLYDRHPG--GTGVS 952
++L EC P SR P R++ +D G GTGVS
Sbjct: 976 SGGATTNPNARFLSNVGEAELRTECKAPEKEFARRETSRKRPARLVFHDARGGERGTGVS 1035
Query: 953 KQ 954
+
Sbjct: 1036 AK 1037
>gi|377573191|ref|ZP_09802263.1| putative ATP-dependent helicase [Mobilicoccus pelagius NBRC 104925]
gi|377538074|dbj|GAB47428.1| putative ATP-dependent helicase [Mobilicoccus pelagius NBRC 104925]
Length = 780
Score = 352 bits (904), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 239/733 (32%), Positives = 364/733 (49%), Gaps = 66/733 (9%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
+ AR A P + ++A + G++ Y HQ E+ AG++ V+AT T+SGKSL
Sbjct: 26 LPARAATTAPWPAWVAPEVRAAFEEAGVAAPYRHQVEAAEHLHAGRHCVLATGTASGKSL 85
Query: 286 CYNLPVLEALSHDLS-----SSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDT 340
Y LP L A+S + + LY+ PTKALA DQL + A+ + VYDGDT
Sbjct: 86 AYLLPALSAISTPPAQARRPPTVLYLAPTKALAADQLAHVQALGLP---GVRAAVYDGDT 142
Query: 341 TQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIR 400
+R W+R +A +++TNPDMLH SILP H FS + L+
Sbjct: 143 PTDERAWIRRHADIVLTNPDMLHRSILPGHRAFSAFVRGLQ------------------- 183
Query: 401 FVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLS 460
+VV+DE H+Y+G FG H A LRRL RL H + + P+F F++AT A+P EH L
Sbjct: 184 YVVVDECHSYRGVFGTHVAATLRRLRRLAVH-HRAHPTFAFASATVAHPAEHASALLGAD 242
Query: 461 TLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAE 520
+ + +D SP A+++ L +PT +D R S ++ + A+
Sbjct: 243 VVA-VTDDTSPAAERVLALLDPTP----------PPGEDRR-------STLTHAAERLAD 284
Query: 521 MVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFF 580
+V +R +AF RSR E+V R L ++ YR GY+ EDRR +E+D
Sbjct: 285 LVDDDVRTVAFTRSRAGAEVVADTARRALTLRPGGREGAVAAYRGGYLPEDRRLLEKDLR 344
Query: 581 GGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEG 640
G+L GVA+T+ALELGID+ +D + G+PG+ A+ WQ+AGR+GR R SL ++VA E
Sbjct: 345 EGRLLGVASTSALELGIDIDGLDAVVLAGWPGTTAAWWQRAGRAGRAGRSSLVLFVADED 404
Query: 641 PLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSL--IYDEKYFGSGLS 698
PLD Y + +PE LF P+E C I N +L HL+ AA E PL E FG +
Sbjct: 405 PLDAYLVAHPEALFDRPLEACVIAPDNPHILAPHLLAAAYELPLRAEETAPEGIFGPTAA 464
Query: 699 SGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLE 758
+ L + G L PS + + P I++R I ++ +++ + ++
Sbjct: 465 PLVARLTDSGLLRRRPS-------GWFWTRDGRPHDDIALRGIGAQ-IRIVEDATGRIIG 516
Query: 759 EIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGG 818
++ ++A ++ GAV++HQGHTY+V+ L+L A D + T R + V
Sbjct: 517 TVDAARADGALHTGAVHLHQGHTYVVRLLDLEDGCAHVVHGDPGWITTPRSVSSFVV--- 573
Query: 819 NNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAV 878
+D+ TA +V + F R G G + L LP+ + + A
Sbjct: 574 ---LDVGRHRDE-GDVTASTGRVSVRSRVTSFLRRLPG-GEVLGQHPLDLPERAMTTSAT 628
Query: 879 WIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPE 937
W + P ++ + LHAA HA++ ++P+ V + D+ H P
Sbjct: 629 WWTLTPALLEEAGLADDDVPGALHAAEHAMIGLLPLLVAADRWDIGGVSTACHPDTGLPT 688
Query: 938 RILLYDRHPGGTG 950
I++YD HPGG G
Sbjct: 689 -IMIYDGHPGGAG 700
>gi|405374116|ref|ZP_11028686.1| ATP-dependent helicase, DEAD/DEAH box family [Chondromyces
apiculatus DSM 436]
gi|397087128|gb|EJJ18190.1| ATP-dependent helicase, DEAD/DEAH box family [Myxococcus sp.
(contaminant ex DSM 436)]
Length = 805
Score = 352 bits (904), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 231/752 (30%), Positives = 376/752 (50%), Gaps = 66/752 (8%)
Query: 224 EDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGK 283
E AR IP+ + + AL GI++L+SHQAE+ G+++V+AT T+SGK
Sbjct: 45 EKTPARPGAFAPIPEEVAPQVREALHQRGITQLFSHQAEAYRLVRDGRSIVIATPTASGK 104
Query: 284 SLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQK 343
SLCYNLP+L+ +H+ + ALY+FPTKAL++DQ +L A + S +DGDT
Sbjct: 105 SLCYNLPLLDRFAHEPQARALYLFPTKALSRDQEESLRAFMREAGLSHGAITFDGDTPAD 164
Query: 344 DRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVV 403
R R+ + +L+TNPDMLH ILP+H ++R+ SNLR +VV
Sbjct: 165 ARRAARERSGVLLTNPDMLHTGILPHHASWARLFSNLR-------------------YVV 205
Query: 404 IDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLE 463
IDE H Y+G FG H A +LRRL R+ + +G+DP F+ ++AT NP H + +
Sbjct: 206 IDELHTYRGVFGSHLANVLRRLQRV-ARFHGADPVFIAASATIGNPEAHARRMLG-REVS 263
Query: 464 LIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQ 523
L+ G+P ++ +++NP VLN +S + L A++V+
Sbjct: 264 LVSESGAPSGERRVMVFNP-----PVLNPE----------LGIRASYLKTAVRLTADLVR 308
Query: 524 HGLRCIAFCRSRKLCELVLSYTRE--ILEETAPHLVDSICVYRAGYVAEDRRRIERDFFG 581
G+ + F +SR E++L Y R+ + E+ P L+ YR GY+ RR E
Sbjct: 309 AGVSTLLFGQSRNNIEVMLKYLRDRFVEEKLDPSLIQG---YRGGYLPGTRRATEAALRA 365
Query: 582 GKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGP 641
G++ V ATNALELGID+G +D + G+PGS+A+L Q+ GR+GRR SLA+ V P
Sbjct: 366 GEVRCVVATNALELGIDIGSLDAVVCAGYPGSVAALMQRFGRAGRRGAGSLALLVTSSAP 425
Query: 642 LDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGI 701
LDQY P L SP+E ID N ++L QHL CA+ E P + + FG
Sbjct: 426 LDQYLAGDPRFLVGSPVEHARIDPDNVEILVQHLKCASFELPFE---EGEPFGDVPPE-- 480
Query: 702 TTLKNRGYLSSD----PSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVL 757
+T + G+L+ P++ + + + + P++ +S+R++ + +I+ ++ L
Sbjct: 481 STAEALGFLAQHEVVHPTIGETGRRVFHWSTDAYPANHVSLRSVGWDNVVIIEKGTDRTL 540
Query: 758 EEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSG 817
E++ A ++E A+Y H+ Y V+ + + A +K YFT Y +H
Sbjct: 541 AEMDFRSAHTMLHEQAIYQHEAEQYQVERFDYENHKAYVRKVAPDYFTDAMTYVRVHAI- 599
Query: 818 GNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQA 877
++ + D A +V G+ ++ + E+ LP+ + A
Sbjct: 600 -QEDHSAPMGPD----LQAGMGEVSVIEKVVGYKKIKYHTHENVGYGEVALPEMQMHTAA 654
Query: 878 VWIQVPQSV-KAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFP 936
+W+ VP++V +++ + L + AL V + + + DL + D+ P
Sbjct: 655 LWLTVPEAVVRSMRAPRPAVIDALRGITTALRTVACVGLMIDPRDLGKTLGSRDDAEGPP 714
Query: 937 ER---------ILLYDRHPGGTGVSKQVTDMK 959
+ I LYD PGG G++ ++ D +
Sbjct: 715 RKDGGVGFDPTIFLYDNVPGGVGLAARLYDQR 746
>gi|448084451|ref|XP_004195608.1| Piso0_005009 [Millerozyma farinosa CBS 7064]
gi|359377030|emb|CCE85413.1| Piso0_005009 [Millerozyma farinosa CBS 7064]
Length = 1175
Score = 352 bits (903), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 259/803 (32%), Positives = 394/803 (49%), Gaps = 135/803 (16%)
Query: 254 SKLYSHQAESIMASL----AGKNVVVATMTSSGKSLCYNLPVLEALSHDLS--------- 300
+ LYSHQ +++ A + ++V+V+T TSSGKSL Y +P+L + D++
Sbjct: 310 TDLYSHQQKALSAIMRTDGKKRHVIVSTPTSSGKSLIYQIPILNDILWDITCNKGPFARH 369
Query: 301 SSALYMFPTKALAQDQLRALLAMTKAFDAS----IDIGVYDGDTTQKDRMWLRDNARLLI 356
++A ++FPTKALAQDQ R L + A+ I + +DGDT Q DR +R + ++
Sbjct: 370 NTAFFIFPTKALAQDQKRHLEDFIRYIPATSKRKIVVNTFDGDTPQSDRKSIRCFSDIIF 429
Query: 357 TNPDMLHMSILP-------YHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHA 409
TNPD +H SILP ++ F L NLR ++VIDE H
Sbjct: 430 TNPDAIHASILPNFMNEYEHNSGFKEFLRNLR-------------------YIVIDELHI 470
Query: 410 YKGAFGCHTALILRRLCRLCS---HVYGSDP----SFVFSTATSANPREHCMELANLSTL 462
YKG FG + LI+ RL R+ S + D + +AT NP H + NL
Sbjct: 471 YKGTFGLNVRLIMSRLMRVVSALREIESPDAEMPVQLISCSATIRNPVSHFRVICNLHKT 530
Query: 463 ELI---QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPIS------- 512
E + DGSP +K F+LWNP + K Q ++ + PIS
Sbjct: 531 EEVVHVDEDGSPSCKKEFILWNPPPLMN---KKGQVQTQLASSSCLSKAMPISTIIPREN 587
Query: 513 ---EVSYLFAEMVQHG--LRCIAFCRSRKLCELVLSYTREILEET---APHLVDS-ICVY 563
E + + +++ H +R IAFC RK+CELV+ R + E PH S + Y
Sbjct: 588 IISECAKMIIQLLGHSSSVRLIAFCPIRKVCELVMKEIRCLASEENYRGPHFSHSEVMSY 647
Query: 564 RAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGR 623
R GY DRR IE+ F G+L + ATNALELGID+ ++DV + GFP S +L QQ GR
Sbjct: 648 RGGYAPSDRRLIEQKMFSGELRAIVATNALELGIDLANLDVIITCGFPMSKMNLHQQFGR 707
Query: 624 SGRRERPS--LAVYVAFEGPLDQYFMKYPEKLF-KSPIECCHID-----AQNHKVLEQHL 675
+GR S +A+ + P+DQY++K P+ L KS E +D L+ HL
Sbjct: 708 AGRNPDSSGTVAILICGTTPIDQYYLKNPKDLIDKSNYEDLCVDGLLRPGSYEFFLKGHL 767
Query: 676 VCAALEHPLSLIYDEKYFGSGLSSGITTLKNR-----------GYLSSDPSLDSSAKIFE 724
CAA E P L D+ +F + SS + L R GY + P +
Sbjct: 768 QCAAFELPFLLQRDQHWFSTDTSSSASDLVARLCQEALFKDTNGYYRTSP---------D 818
Query: 725 YIGHEKMPSHTISIRAIESERYEVIDMQSNE--VLEEIEESKAFFQVYEGAVYMHQGHTY 782
Y+ P +SIR E Y V+D+ +N V+EEIEES+ F +YEGA+++HQG +Y
Sbjct: 819 YL---PWPPDCVSIRKTEEVTYAVVDITNNRNVVIEEIEESRTSFTLYEGAIFLHQGLSY 875
Query: 783 LVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQAL--- 839
LVKE + K A ++ + + T RD+TD V Y ++ K + +
Sbjct: 876 LVKEFSTDYKFAKVERVKVDWTTSQRDFTD--VDPIRIEYIKQLIHPSSGKPSDIPVFYG 933
Query: 840 ACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVV-EQNFSFRS 898
T FG++++ R + II + VE+ P +S+ WI +P +V +++ E++ S
Sbjct: 934 GIETTIIVFGYFKVNRRNEII-EAVEVKNPPVLIKSKGFWIDIPSNVISLIKEKSLSMAG 992
Query: 899 GLHAASHALLHVVPIYV--------RCNF------SDLAPECPNP-------HDSRYFPE 937
G+H+A HA+++++P++V F ++L EC P R P
Sbjct: 993 GIHSAQHAIMNMLPLFVGYGATSDPNAKFTSSFGETELMSECKAPEKEFAHRQTKRVRPA 1052
Query: 938 RILLYDRHPG--GTGVSKQVTDM 958
RI+ +D G GTGV+++ ++
Sbjct: 1053 RIIFHDSKGGLQGTGVAQKTFEL 1075
>gi|440733731|ref|ZP_20913415.1| ATP-dependent RNA helicase [Xanthomonas translucens DAR61454]
gi|440359249|gb|ELP96573.1| ATP-dependent RNA helicase [Xanthomonas translucens DAR61454]
Length = 832
Score = 352 bits (903), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 234/760 (30%), Positives = 376/760 (49%), Gaps = 89/760 (11%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
I R IPD + +ALK+ GI +LYSHQAE+ A+ G++V + T T+SGKSL
Sbjct: 49 IPGRAGRYAPIPDDVPAALVAALKARGIEQLYSHQAEAWDAAQRGEHVAIVTPTASGKSL 108
Query: 286 CYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDR 345
CY LPV+ A + ALY+FPTKALAQDQ+ LL + +A + + +DGDT R
Sbjct: 109 CYTLPVVAAAMT-AQAKALYLFPTKALAQDQVAELLELNRAGELGVKAFTFDGDTPGDAR 167
Query: 346 MWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVID 405
+R + ++++NPDMLH +ILP+H ++++ NLR +VVID
Sbjct: 168 QAIRLHGDIVVSNPDMLHQAILPHHTKWAQFFENLR-------------------YVVID 208
Query: 406 EAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELI 465
E H Y+G FG H +LRRL R+C+ YG +P F+ +AT NPR H L + I
Sbjct: 209 EIHTYRGVFGSHVTNVLRRLKRICA-FYGVNPQFILCSATIGNPRAHAEALIE-QRVHAI 266
Query: 466 QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHG 525
G+P K +LWNP V+N D+ R +A S+ I+ ++ ++ G
Sbjct: 267 TESGAPSGDKHVLLWNP-----PVVN---ADLG-LRASARSQSNRIARIA------IKSG 311
Query: 526 LRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLC 585
L+ + F ++R + E++ Y ++I + P I YR GY+ +RR ER G +
Sbjct: 312 LKTLVFAQTRLMVEVLTKYLKDIFDHD-PRKPPRIRAYRGGYLPTERREAERAMRAGSID 370
Query: 586 GVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQY 645
G+ +T+ALELG+D+G +DV + G+PGS+A+ WQ+ GR+GRR++PSL V VA PLDQY
Sbjct: 371 GIVSTSALELGVDIGSLDVVVLNGYPGSVAATWQRFGRAGRRQQPSLGVLVASSQPLDQY 430
Query: 646 FMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLK 705
+++P+ + E I +L H+ CAA E L+ + E + G L+
Sbjct: 431 VVRHPDFFADASPEHARIAPDQPLILFDHIRCAAFE--LTFVAGEAF---GPVDPAVFLE 485
Query: 706 NRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN--EVLEEIEES 763
L+ + +E+I + P++ +S+R++ + V+D +++ E++ S
Sbjct: 486 A---LAESDVVHQEGDRWEWIA-DSYPANAVSLRSVADGNFVVVDKTDGKQQIIAEVDYS 541
Query: 764 KAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYA 823
A +YEGA++M Q Y V++L+ + A + + Y+T + D+T + V
Sbjct: 542 AAALTLYEGAIHMVQSTPYQVEKLDWEGRKAYVTRTHVDYYTDSIDFTKLKV-------L 594
Query: 824 TKISKDQLTKTTAQALACTVTTTWFGF--YRLWRGSGIIFDTVELYLPKYSYESQAVWIQ 881
+ + + V G+ R + I + V LP + AVW Q
Sbjct: 595 DRFDGGAAGRGDSHHGEVHVVRRVAGYKKIRYYTHENIGYGPVT--LPDQELHTTAVWWQ 652
Query: 882 VPQS--VKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRY----- 934
+PQ+ +KA + + G A++AL V + V + DL + + +
Sbjct: 653 LPQATLLKAFAAKQDAL-DGFLGAAYALHVVATVAVMADARDLQKAVGDGDGAWFAMADA 711
Query: 935 ---------------------FPERILLYDRHPGGTGVSK 953
F + LYD PGG G+S+
Sbjct: 712 KGRGQLRGGDNGEPVGVELQQFVPTVYLYDNFPGGVGLSE 751
>gi|220903363|ref|YP_002478675.1| DEAD/DEAH box helicase [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219867662|gb|ACL47997.1| DEAD/DEAH box helicase domain protein [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
Length = 1086
Score = 352 bits (902), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 233/756 (30%), Positives = 362/756 (47%), Gaps = 118/756 (15%)
Query: 248 LKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMF 307
L+ GI LYSHQA + AG ++V AT T+SGKSL YNLPVLE D + ALY+F
Sbjct: 48 LEQRGIPGLYSHQALATDHIRAGHSIVAATPTASGKSLIYNLPVLERHLRDPDARALYLF 107
Query: 308 PTKALAQDQLRALLAMTKAF--DASIDIGVYDGDTTQKDRMWLR-DNARLLITNPDMLHM 364
P KALAQDQL A A+T A+ DA +YDGDTT R +R D +LI+NP+MLH+
Sbjct: 108 PLKALAQDQLAAFNALTAAWPKDARPAAALYDGDTTDHFRRKIRRDPPAVLISNPEMLHL 167
Query: 365 SILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRR 424
ILP+H Q++ L+ L VV+DEAH Y+G FG H A + RR
Sbjct: 168 GILPHHEQWAAFLAGLT-------------------HVVVDEAHTYRGVFGAHMAQVFRR 208
Query: 425 LCRLCSHVYGSDPSFVFSTATSANPREHCMEL------------------------ANLS 460
L RL YG++P +V TAT NP E L A
Sbjct: 209 LNRLAGR-YGANPVYVLCTATVGNPGELGAALTGAAWPGTGDSRHPESPVPSGTDAAATQ 267
Query: 461 TLE----------------LIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T+E +I G+P + FV NP
Sbjct: 268 TVEAGGFFPQQPAALPPPVVIDRSGAPQGPRHFVFLNPEQ-------------------- 307
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYR 564
SP + L + LR I +CRSR++ EL+ + + + I YR
Sbjct: 308 ----SPATAAIDLLKAALARNLRTIVYCRSRRMTELISLWAGQ-----SGSFSSRISAYR 358
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
AG++ E+RR IE G+L V +T+ALELGID+G +DV + +G+PG++ + Q+ GR
Sbjct: 359 AGFLPEERRSIESRMASGELLAVVSTSALELGIDIGGLDVCILVGYPGTVMATLQRGGRV 418
Query: 625 GRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
GR ++ S + VA E LDQYF + P+ F P E ++ N +L +HL CAA E PL
Sbjct: 419 GRAQQESAVIVVAGEDALDQYFARNPDDFFNRPPEKAVVNPDNEVILARHLECAAAEMPL 478
Query: 685 SLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESE 744
L G + + L L++ L SA+ + + K P + +R +
Sbjct: 479 RL-------GEAMLASPAALDAARALNAQGLLLQSAEGGQLMASRKRPQRHVDLRGT-GQ 530
Query: 745 RYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYF 804
+ + D Q + ++ ++ +A+ + + GAVY+H+G +Y+++E++ + ++A + +F
Sbjct: 531 TFSIEDGQGH-IIGSVDGFRAWRETHPGAVYLHRGRSYIIEEIDSGRARIVAKEARVSWF 589
Query: 805 TKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALAC----TVTTTWFGFYRLWRGSGII 860
T+TR +T I ++ + + L C + T G+ + +
Sbjct: 590 TRTR-----------GQKSTDILEEAERTSLGRVLVCRGRLRIIDTITGYEKRSTTGNRL 638
Query: 861 FDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNF-SFRSGLHAASHALLHVVPIYVRCNF 919
L P +E++ +W +P +++A +E+NF F G+HA HA + ++P+ + +
Sbjct: 639 LTIAPLDAPPQVFETEGLWFVIPDNIRAGLEENFMHFMGGIHALEHAAIGMLPLLIMADR 698
Query: 920 SDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
+D H P + +YD PGG G+++Q
Sbjct: 699 NDFGGISTPMHIQLGLPA-VFIYDGLPGGAGLTRQA 733
>gi|229918742|ref|YP_002887388.1| DEAD/DEAH box helicase [Exiguobacterium sp. AT1b]
gi|229470171|gb|ACQ71943.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sp. AT1b]
Length = 650
Score = 352 bits (902), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 209/603 (34%), Positives = 328/603 (54%), Gaps = 50/603 (8%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
EM++ L+ G + H + AR A IP+ + + + LK+ GI +LY+HQAE++
Sbjct: 9 EMIKQLKDDPGFSNHVRHWHTVDARPAQYAPIPEQVPEQLANVLKNRGIEQLYTHQAEAV 68
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
+ AG + V+ T T+SGK+LCYNLPVL + ++ ALY++PTKALAQDQ L+ M
Sbjct: 69 KQTAAGHSTVIVTPTASGKTLCYNLPVLSKMIEKPTARALYLYPTKALAQDQNSDLMEMV 128
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
+A + ++ YDGDT+ R +RD ++ITNPDMLH ILP+H ++ R+ NL
Sbjct: 129 EALEGNLRCFTYDGDTSPAARTKVRDAGNIVITNPDMLHSGILPHHTKWIRLFENL---- 184
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
++V+DE H Y+G FG H A + RRL R+C++ YGS P ++ ++A
Sbjct: 185 ---------------EYIVVDELHTYRGVFGSHVANVFRRLKRICAY-YGSHPKWIMTSA 228
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T ANP E L + LI +G+P +K V +NP V+N+ A
Sbjct: 229 TIANPLELAELLTEEEVV-LIDRNGAPQGKKHLVFYNP-----PVVNE----------AL 272
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREIL-EETAPHLVDSICVY 563
S E + + +V+ ++ I F RSR E++L+Y +E+ E P SI Y
Sbjct: 273 GIRRSATLETKRIASRLVEANIQTIVFARSRVRVEVLLTYLQELTRRELGP---KSIVGY 329
Query: 564 RAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGR 623
R GY+ +RR IER G++ V +TNALELG+D+G + + G+PG++ASLWQQAGR
Sbjct: 330 RGGYLPSERREIERRLRNGEIKAVVSTNALELGVDIGQLQACVLNGYPGTVASLWQQAGR 389
Query: 624 SGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHP 683
+GRR SL V+VA LDQ ++ P+ + + E +D N +L H+ CAA E P
Sbjct: 390 AGRRHSESLVVFVASSSSLDQLVVEQPDMILERSPEAARLDPNNLIILVDHMKCAAFELP 449
Query: 684 LSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIES 743
+ FG+ + I +L+ L A + Y + P+H IS+R +
Sbjct: 450 FQ---KGERFGTVDTEDILE-----FLTDAHVLHERADRY-YWMTDSFPAHDISLRTSDQ 500
Query: 744 ERYEVIDMQS-NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLK 802
E ++D + ++V+ E++ A +++ A+Y+H Y V++L+ K A ++ D+
Sbjct: 501 ENVVIVDQTAKHQVIGEMDTFSAMTLLHDEAIYLHGAEQYQVEKLDFEEKKAYVRRVDVD 560
Query: 803 YFT 805
Y+T
Sbjct: 561 YYT 563
>gi|146422346|ref|XP_001487113.1| hypothetical protein PGUG_00490 [Meyerozyma guilliermondii ATCC 6260]
Length = 1154
Score = 351 bits (901), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 252/787 (32%), Positives = 390/787 (49%), Gaps = 107/787 (13%)
Query: 247 ALKSTGISK-LYSHQAESIMASLAGKN-VVVATMTSSGKSLCYNLPVLEALSHDLS---- 300
+K+ + K LYSHQ+E++ + LA KN +V+T TSSGKSL Y +P++ + DL
Sbjct: 279 TVKNIDVEKDLYSHQSEALKSILAHKNHTIVSTSTSSGKSLIYQIPIVNEILWDLEENSK 338
Query: 301 -----SSALYMFPTKALAQDQLRALLAMTKAFDAS----IDIGVYDGDTTQKDRMWLRDN 351
S+A ++FPTKALAQDQLR L + A ++ I I YDGDT + R +R
Sbjct: 339 ANKRRSTAFFIFPTKALAQDQLRHLQNLISALPSNSKRQIIIDAYDGDTPAESRSRIRRF 398
Query: 352 ARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLF-IRFVVIDEAHAY 410
A ++ TNPD +H SILP H +S L +++ + FL ++FVV+DE H Y
Sbjct: 399 ADIIFTNPDTIHASILPNHSGYSY-----------LDSSDGWKDFLSNLKFVVVDELHVY 447
Query: 411 KGAFGCHTALILRRLCRLCSHV---YGSDPSFVFSTATSANPREHCMELANLSTLEL--- 464
KG FG + ++ RL R+ + + D FV +AT NP H + + + E
Sbjct: 448 KGTFGVNIRYVMSRLQRIHAKITEHLSKDIIFVSCSATVLNPPSHFRAICGIHSSEHVMH 507
Query: 465 IQNDGSPCAQKLFVLWNPTSCLRSVLNK--SQTDMDDTRNAANKTSSPISEVSYL----- 517
I DGSPC++K V+WNP ++NK + + + T+ I VS +
Sbjct: 508 IHQDGSPCSEKKLVVWNPPP----LMNKRGQTQSQLQSSSEVSITNKFIPRVSLVEELAR 563
Query: 518 ---FAEMVQHGLRCIAFCRSRKLCELVLSYTREIL-EETAPHLVDS-ICVYRAGYVAEDR 572
++ I FC R +CEL++ R +L ++ P++ S I YR GY DR
Sbjct: 564 LLLHLLSKLPTIKVILFCPIRAVCELIMKEVRSLLLQQKWPNVQSSDIMSYRGGYSKSDR 623
Query: 573 RRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS--GRRERP 630
R IE+ F G+L + ATNALELGID+ +D+ + GF GS +L QQ GR+ GR
Sbjct: 624 RLIEQKMFSGQLRAIVATNALELGIDLADLDIVIACGFSGSKLNLHQQFGRAGRGRDSNG 683
Query: 631 SLAVYVAFEGPLDQYFMK-YPEKLFKSPIECCHID-----AQNHKVLEQHLVCAALEHPL 684
SLA+YV+ P+DQY++K Y E KS E ++ Q +LE HL CAA E P+
Sbjct: 684 SLAIYVSGSSPVDQYYLKNYMELCDKSEYEDLCVEGLIEIGQAQLILELHLQCAAFEWPI 743
Query: 685 SLIYDEKYFGSG-----------LSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPS 733
L +D K+F L N G ++P+ + P
Sbjct: 744 DLEHDMKWFTFNDSAKQQNQYVELCRTKLVTDNLGRYRTNPT------------YLPWPV 791
Query: 734 HTISIRAIESERYEVIDMQS--NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSS 791
SIR ++ Y V+D+ N V+EE+EE + F +YEG +++HQG +YLVKE N
Sbjct: 792 DHCSIRHVDDNVYAVVDITDGRNVVIEEVEELRTSFTLYEGGIFLHQGVSYLVKEFNTEE 851
Query: 792 KIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFY 851
K + Q+ ++ + T RDY+D+ + + + T FG++
Sbjct: 852 KYSKVQRVEVDWTTSQRDYSDVDPIEIEVVKCLRSPLNFINDIPVFYGKILTTIKVFGYF 911
Query: 852 RLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQ-NFSFRSGLHAASHALLHV 910
+L R + I+ + V++ P +S+ WI +P+ +++ S G+HAA HA++++
Sbjct: 912 KLNRKAEIL-EAVDVANPPVFLKSKGFWIDIPEKALLLIQDLKLSPAGGVHAAQHAIMNI 970
Query: 911 VPIYV--------------RCNFSDLAPECPNPHD-------SRYFPERILLYDRHPG-- 947
+P+++ ++L EC P SR P R++ +D G
Sbjct: 971 LPLFISGGATTNPNARFLSNVGEAELRTECKAPEKEFARRETSRKRPARLVFHDARGGER 1030
Query: 948 GTGVSKQ 954
GTGVS +
Sbjct: 1031 GTGVSAK 1037
>gi|444914370|ref|ZP_21234513.1| ATP-dependent helicase, DEAD/DEAH box family [Cystobacter fuscus
DSM 2262]
gi|444714602|gb|ELW55481.1| ATP-dependent helicase, DEAD/DEAH box family [Cystobacter fuscus
DSM 2262]
Length = 809
Score = 351 bits (901), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 235/756 (31%), Positives = 380/756 (50%), Gaps = 78/756 (10%)
Query: 224 EDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGK 283
E AR IP+ + + AL+ GI +L+SHQAE+ + GKN+V+AT T+SGK
Sbjct: 49 EVTPARPGAHAPIPEGVAPQVREALRRRGIERLFSHQAEAYELAHLGKNLVIATPTASGK 108
Query: 284 SLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIG--VYDGDTT 341
SLCYNLP+L+ + + + ALY+FPTKAL++DQ +L + +A ++ G +DGDT
Sbjct: 109 SLCYNLPLLDRFAREPQARALYLFPTKALSRDQEESLRVFMR--EAGLEHGAITFDGDTP 166
Query: 342 QKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRF 401
R R+ + +L+TNPDMLH ILP+H ++R+ SNL R+
Sbjct: 167 ADARRAARERSGVLLTNPDMLHTGILPHHASWARLFSNL-------------------RY 207
Query: 402 VVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLST 461
VVIDE H Y+G FG H A +LRRL R+ + +GS P+F+ ++AT NP+ H +
Sbjct: 208 VVIDELHTYRGVFGSHLANVLRRLQRVAA-FHGSSPTFILASATIGNPKAHAERMLG-RE 265
Query: 462 LELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEM 521
+ LI G+P ++ +++NP V+N +S + L A++
Sbjct: 266 VALISESGAPAGERRVMVYNP-----PVVNAE----------LGIRASYLKSAVRLTADL 310
Query: 522 VQHGLRCIAFCRSRKLCELVLSYTRE--ILEETAPHLVDSICVYRAGYVAEDRRRIERDF 579
V+ + + F +SR E++L Y R+ + E+ P+L+ YR GY+ RR E
Sbjct: 311 VRAEVSTLLFAQSRNSVEVMLKYLRDKFVAEKMDPNLIQG---YRGGYLPGTRRATEAAL 367
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFE 639
G++ V ATNALELGID+G +D + G+PGS+A+L Q+ GR+GRR SLA+ V
Sbjct: 368 RAGEVRCVVATNALELGIDIGSLDAVVCAGYPGSVAALMQRFGRAGRRGAGSLALLVTSS 427
Query: 640 GPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSS 699
PLDQY P L +P+E ID N ++L QHL CAA E P + + FG +
Sbjct: 428 APLDQYLASDPRFLTGAPVEHARIDPDNVEILVQHLKCAAFELPFA---EGDTFGDVPAE 484
Query: 700 GITTLKNRGYLSS----DPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNE 755
+T GYLS PS + + + P++ +S+R++ + +I++ ++
Sbjct: 485 SVT--DALGYLSQHEVVHPSPGPEGRKMFHWSSDAYPANHVSLRSVGWDNVVIIELGTDR 542
Query: 756 VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHV 815
L E++ A ++E A+Y H+ Y V+ + + A +K YFT Y ++V
Sbjct: 543 TLAEMDFRSAHTMLHEQAIYQHEAEQYQVERFDYDNHKAYVRKVAPDYFTDAMTYVRVNV 602
Query: 816 SGGNNAYATKISKDQ---LTKTTAQALA-CTVTTTWFGFYRLWRGSGIIFDTVELYLPKY 871
I +DQ + T + +V G+ ++ + E+ LP+
Sbjct: 603 ----------IQEDQGSPMGPTLQAGMGEVSVIEKVVGYKKIKFHTHENVGYGEVALPEM 652
Query: 872 SYESQAVWIQVPQS-VKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPH 930
+ ++W+ VP++ V++ + L + AL V + + + DL +
Sbjct: 653 QMHTTSLWLTVPETVVRSFGAPRPAVIDALRGIATALRTVACVGLMIDPRDLGKTLGSKD 712
Query: 931 DSRYFPER---------ILLYDRHPGGTGVSKQVTD 957
D+ P + I LYD PGG G++ ++ D
Sbjct: 713 DADGPPRKDGGVGFDPTIFLYDNIPGGVGLAARLFD 748
>gi|433679309|ref|ZP_20511059.1| hypothetical protein BN444_03355 [Xanthomonas translucens pv.
translucens DSM 18974]
gi|430815567|emb|CCP41629.1| hypothetical protein BN444_03355 [Xanthomonas translucens pv.
translucens DSM 18974]
Length = 832
Score = 351 bits (901), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 233/760 (30%), Positives = 376/760 (49%), Gaps = 89/760 (11%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
+ R IPD + +ALK+ GI +LYSHQAE+ A+ G++V + T T+SGKSL
Sbjct: 49 LPGRAGRYAPIPDDVPAALVAALKARGIEQLYSHQAEAWDAAQRGEHVAIVTPTASGKSL 108
Query: 286 CYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDR 345
CY LPV+ A + ALY+FPTKALAQDQ+ LL + +A + + +DGDT R
Sbjct: 109 CYTLPVVAAAMT-AQAKALYLFPTKALAQDQVAELLELNRAGELGVKAFTFDGDTPGDAR 167
Query: 346 MWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVID 405
+R + ++++NPDMLH +ILP+H ++++ NLR +VVID
Sbjct: 168 QAIRLHGDIVVSNPDMLHQAILPHHTKWAQFFENLR-------------------YVVID 208
Query: 406 EAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELI 465
E H Y+G FG H +LRRL R+C+ YG +P F+ +AT NPR H L + I
Sbjct: 209 EIHTYRGVFGSHVTNVLRRLKRICA-FYGVNPQFILCSATIGNPRAHAEALIE-QRVHAI 266
Query: 466 QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHG 525
G+P K +LWNP V+N D+ R +A S+ I+ ++ ++ G
Sbjct: 267 TESGAPSGDKHVLLWNP-----PVVN---ADLG-LRASARSQSNRIARIA------IKSG 311
Query: 526 LRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLC 585
L+ + F ++R + E++ Y ++I + P I YR GY+ +RR ER G +
Sbjct: 312 LKTLVFAQTRLMVEVLTKYLKDIFDHD-PRKPPRIRAYRGGYLPTERREAERAMRAGSID 370
Query: 586 GVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQY 645
G+ +T+ALELG+D+G +DV + G+PGS+A+ WQ+ GR+GRR++PSL V VA PLDQY
Sbjct: 371 GIVSTSALELGVDIGSLDVVVLNGYPGSVAATWQRFGRAGRRQQPSLGVLVASSQPLDQY 430
Query: 646 FMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLK 705
+++P+ + E I +L H+ CAA E L+ + E + G L+
Sbjct: 431 VVRHPDFFADASPEHARIAPDQPLILFDHIRCAAFE--LTFVAGEAF---GPVDPAVFLE 485
Query: 706 NRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN--EVLEEIEES 763
L+ + +E+I + P++ +S+R++ + V+D +++ E++ S
Sbjct: 486 A---LAESEVVHQEGDRWEWIA-DSYPANAVSLRSVADGNFVVVDKTDGKQQIIAEVDYS 541
Query: 764 KAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYA 823
A +YEGA++M Q Y V++L+ + A + + Y+T + D+T + V
Sbjct: 542 AAALTLYEGAIHMVQSTPYQVEKLDWEGRKAYVTRTHVDYYTDSIDFTKLKV-------L 594
Query: 824 TKISKDQLTKTTAQALACTVTTTWFGF--YRLWRGSGIIFDTVELYLPKYSYESQAVWIQ 881
+ + + V G+ R + I + V LP + AVW Q
Sbjct: 595 DRFDGGAAGRGDSHHGEVHVVRRVAGYKKIRYYTHENIGYGPVT--LPDQELHTTAVWWQ 652
Query: 882 VPQS--VKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRY----- 934
+PQ+ +KA + + G A++AL V + V + DL + + +
Sbjct: 653 LPQATLLKAFAAKQDAL-DGFLGAAYALHVVATVAVMADARDLQKAVGDGDGAWFAMADA 711
Query: 935 ---------------------FPERILLYDRHPGGTGVSK 953
F + LYD PGG G+S+
Sbjct: 712 KGRGQLRGGDNGEPVGVELQQFVPTVYLYDNFPGGVGLSE 751
>gi|448502806|ref|ZP_21612755.1| DEAD/DEAH box helicase [Halorubrum coriense DSM 10284]
gi|445693869|gb|ELZ46010.1| DEAD/DEAH box helicase [Halorubrum coriense DSM 10284]
Length = 806
Score = 351 bits (900), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 239/785 (30%), Positives = 371/785 (47%), Gaps = 76/785 (9%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
+ +E LR +GQ+ + AR ++ L AL G+ +LY HQA++I
Sbjct: 3 DAIEWLRDRPFYEGQIADHRRLPARDPEFADV--DLEPRLAGALDDRGVERLYRHQADAI 60
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL--LA 322
A G +VV+AT T+SGKSL Y +P EA + D LY+ P AL DQ +L LA
Sbjct: 61 GAVRDGDDVVLATETASGKSLAYTVPAFEA-AMDHGGRTLYLGPQNALIADQEESLSGLA 119
Query: 323 MTKAFDASIDIGVYDGDTTQKDRMWLRDN-ARLLITNPDMLHMSILPYHGQFSRILSNLR 381
F + + + Y G ++ ++ +RD +L++NPDMLH ++LPY G R
Sbjct: 120 ADLGFGSRVSVDSYTGRLSRSEKRDVRDRRPTVLLSNPDMLHYALLPYAG---------R 170
Query: 382 LIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVF 441
L + F + +VVIDE H+Y+G FG AL LRRL R C +GS P FV
Sbjct: 171 LWDW---------FFSSLEYVVIDEVHSYRGVFGSQVALTLRRLARTCER-FGSAPQFVC 220
Query: 442 STATSANPREHCMELA--NLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDD 499
+AT NP +H + + + L+ D S + +VLWNP + D D
Sbjct: 221 CSATINNPVDHVATVTGRDPEGIALVDEDASGRGPRDWVLWNP----------PEYDDDW 270
Query: 500 TRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LVD 558
+ + S +E LF ++V G + +AF R+R+ E + + L E L
Sbjct: 271 AERGSGRRKSSHTESKRLFVDLVTAGQQTLAFTRARQTAEQYATDSASDLRERGERDLAG 330
Query: 559 SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLW 618
+ Y+A + RR IE GG L GV +T+ALELG+DVG +D + G+PG+ S
Sbjct: 331 KVGAYQAALTDDRRREIESALHGGDLRGVWSTSALELGVDVGGLDAVVLDGYPGTRMSAH 390
Query: 619 QQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCA 678
Q+AGR+GR + P+ V V E LDQY M+ P F +P E D +N +++ H+ CA
Sbjct: 391 QRAGRAGRGDDPATVVMVGGEDQLDQYLMRNPSDFFDAPPEDAICDPENGQLMPGHVACA 450
Query: 679 ALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISI 738
A E LS DE++FG S + L G L + D + + G P ++++
Sbjct: 451 ADESWLS-PEDERFFGDSFPSVVADLTEEGVLERREAADGTRWVHAGGGS---PQQSVNL 506
Query: 739 RAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQK 798
R E +I+ S E + + + A + GA+Y QG TY V EL+L +A Q+
Sbjct: 507 RTAEEREISLIERSSGETVATLGFADALRDAHPGAIYHQQGRTYEVVELDLDRDVAELQQ 566
Query: 799 ADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSG 858
+ Y+T+ R DI V+ + A D + TVT GF R +G
Sbjct: 567 SWADYYTQVRSDKDIVVNADLDERALSARPD----VPVRFADVTVTEQITGFVRKDAATG 622
Query: 859 IIFDTVELYLPKYSYESQAVWIQVPQSVK--------AVVEQN----------------- 893
L LP+ + +++++ VP+ V+ AV E
Sbjct: 623 ESLGESTLDLPETTLRTKSLYFPVPEDVEREMRRLGDAVDEDGAGPAVSADGGRPDDEPI 682
Query: 894 ----FSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGT 949
++F G+HAA H ++ + P ++ C+ +D+ PH + +YD +PGG
Sbjct: 683 PGGEYAFNGGIHAAEHGIISLFPFHLLCDRADVG-GISTPHHPHTEGPAVFVYDGYPGGV 741
Query: 950 GVSKQ 954
G++++
Sbjct: 742 GLTRR 746
>gi|218295152|ref|ZP_03495988.1| Helicase superfamily 1 and 2 ATP-binding [Thermus aquaticus
Y51MC23]
gi|218244355|gb|EED10880.1| Helicase superfamily 1 and 2 ATP-binding [Thermus aquaticus
Y51MC23]
Length = 733
Score = 350 bits (899), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 226/705 (32%), Positives = 361/705 (51%), Gaps = 101/705 (14%)
Query: 257 YSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQ 316
++HQ ++ GKN+V+A T++GKSL + PVL+A ++L +FPTKALA DQ
Sbjct: 58 FAHQKRALEVLEEGKNLVMAYSTAAGKSLVFQAPVLKAALE--GETSLLLFPTKALAHDQ 115
Query: 317 LRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRI 376
LR L AM +A S + YDGDT +R R+ +L++NPDMLH +LP HG+++
Sbjct: 116 LRRLKAMAQALGLS-GVFPYDGDTQSGERRKAREEGLVLLSNPDMLHFGLLPRHGEWASF 174
Query: 377 LSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSD 436
LS LR ++V+DE HAY+G FG H +L+L RL RL H YG++
Sbjct: 175 LSRLR-------------------YLVLDELHAYRGVFGTHVSLVLFRLLRLARH-YGAN 214
Query: 437 PSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTD 496
P + ++AT NP+EH L L +EL + + + ++L VL L K
Sbjct: 215 PQVIAASATIKNPKEHAEALTGLPFVEL-KAEVARSERELLVL----------LPKPLDQ 263
Query: 497 MDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHL 556
+ R SP+ E +YL + GL+ + F SRK EL+ Y A H
Sbjct: 264 KGERRR------SPLLEAAYLARALADEGLKGLVFANSRKSAELIARY--------AAH- 308
Query: 557 VDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIAS 616
+ YRAGY A++RRR+E G++ + +T+ALELG+D+G +D +G+PGS+A+
Sbjct: 309 -PGVRPYRAGYTAKERRRLEEALKRGEVRVLVSTSALELGVDIGELDAVALVGYPGSVAA 367
Query: 617 LWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLV 676
WQ+AGR+GR ER +L V++ E PLD+YF+ PE L KSP E D +N + HL
Sbjct: 368 FWQRAGRAGRGERRALVVFIPREDPLDEYFLHRPELLLKSPPEEAIADPKNPVLCPLHLH 427
Query: 677 CAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTI 736
AA E PL E+ +T LK + +++ ++ P I
Sbjct: 428 AAAYEMPLR---REEVL---CQEALTELK-----------EKEGRLYT---QKRRPHREI 467
Query: 737 SIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALC 796
++R + + + EVL ++E +A+++ + GA+Y+HQG +YLV+ ++L +
Sbjct: 468 TLRGLGATF--TLRGPEGEVLGYLDERQAYWEAHPGAIYLHQGESYLVRNVDLKRREVWL 525
Query: 797 QKADLKYFTKTRDYTDIHV-SG---GNNAYATKISKDQLTKTTAQALACTVTTTWFGFYR 852
A Y+T+ R +D+ V SG G+ Y ++ + + V +F
Sbjct: 526 LPALEDYYTEPRAESDLEVLSGEPVGHGVYVGRV-------VLRERVVGYVKKRFF---- 574
Query: 853 LWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVP 912
+G + + V L +P+ ++ ++A+W P+ V G+HA HA++ ++P
Sbjct: 575 ----TGSVLEEVPLLMPEIAFPTEALWFHPPEVVPP-----HQIPGGIHALEHAMIGLLP 625
Query: 913 IYVRCNFSDLA----PECPNPHDSRYFPERILLYDRHPGGTGVSK 953
++V D+ P P P S P + +YD +PGG G ++
Sbjct: 626 LFVLAERQDIGGLSYPFYPRPLPSGGGPT-VFIYDGYPGGVGYAR 669
>gi|403417163|emb|CCM03863.1| predicted protein [Fibroporia radiculosa]
Length = 1009
Score = 350 bits (899), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 209/580 (36%), Positives = 315/580 (54%), Gaps = 74/580 (12%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSAL-KSTGISKLYSHQAESIMASLAGKNVVVAT 277
Q+V + A+ V+ + L ++ + AL + I+ LY+HQ +I GK+V+V+T
Sbjct: 292 QIVDRRTVDAKDGVIGCLNSPLSNSIQQALCDARKITSLYTHQVAAINFLSRGKSVIVST 351
Query: 278 MTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL---------LAMTKAFD 328
T+SGKS+ Y +P+L L D +S+A++++PTKALAQDQ AL L TK F
Sbjct: 352 STASGKSVIYQVPLLRFLEDDPNSTAIFIYPTKALAQDQKLALEQLLCSCPGLEHTKVF- 410
Query: 329 ASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLV 388
YDGDT Q R +R++A ++ TN DMLH SILP+ + R L NL+L+A
Sbjct: 411 ------TYDGDTPQDQRAGIRESASVIFTNFDMLHTSILPHEDLWRRFLKNLKLVA---- 460
Query: 389 TTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSAN 448
+DE H Y FG H A ++RR R+C+ + FV +AT AN
Sbjct: 461 ---------------VDELHYYYNIFGSHVAQVMRRFRRVCAAIGNRRTCFVSCSATIAN 505
Query: 449 PREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTS 508
PR+H + + ++ + DG+P +K F++W + + D + +
Sbjct: 506 PRQHMQNIFGIEDIDEVTEDGAPSGRKDFLIW-------------RAPLTDPTDEKSSRL 552
Query: 509 SPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTR-EILEETAPHLVDSICVYRAGY 567
SP+SE + L ++ G+R I FC+ RK CEL + R E+ + +++ + YR GY
Sbjct: 553 SPMSEATKLMRLLMARGIRVILFCKIRKSCELAMKTLRAELTADGCLDILEKVMAYRGGY 612
Query: 568 VAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFP-GSIASLWQQAGRSGR 626
+DRRRIE++ F G L G+ ATNALELG+D+G +D L LGFP G +AS QQAGR+GR
Sbjct: 613 SQQDRRRIEKEAFSGNLLGIVATNALELGVDIGVLDAVLMLGFPMGGVASFRQQAGRAGR 672
Query: 627 RERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSL 686
R R +LAV+VA P+D +++ P L+ PI ID + +LE HL CAA E PL+
Sbjct: 673 RARDALAVFVADTLPVDLHYVNAPNDLYDKPISDLVIDLDSKVILEAHLQCAAHELPLAF 732
Query: 687 IYDEKYFGSGLSSGITT--LKNR-GYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIES 743
DE YFG + T +K+R G+ + P P+ IS+R +
Sbjct: 733 -EDEVYFGPYMKEICETRLVKDREGWFNPHPK------------SLPFPAKHISLRGAQE 779
Query: 744 ERYEVIDMQS-------NEVLEEIEESKAFFQVYEGAVYM 776
++YE+ID+ ++LE+IE S+A F++YEG V +
Sbjct: 780 DKYELIDITRLGKPGGHAQILEQIEVSRALFEIYEGGVAI 819
Score = 47.0 bits (110), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 13/117 (11%)
Query: 849 GFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQ-SVKAVVEQNFSFRSGLHAASHAL 907
+ ++ G I D V+L P + ES +WI VP+ ++ + + + +H+A HA+
Sbjct: 808 ALFEIYEGGVAIIDAVDLDTPPWERESTGMWIDVPKRTLNLMRDSGINPAEAIHSAEHAI 867
Query: 908 LHVVPIYVRCNFSDLAPEC-------PNPHDSRYFPERILLYDRHPGGTGVSKQVTD 957
L+ + +DL EC + R P R++ Y+ +GV+ +V D
Sbjct: 868 LNRFALA-----TDLRTECKVAEKEYKSKESQRKRPARLIFYEPTGKNSGVATRVFD 919
>gi|386772521|ref|ZP_10094899.1| helicase family protein with metal-binding cysteine cluster
[Brachybacterium paraconglomeratum LC44]
Length = 814
Score = 350 bits (898), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 250/804 (31%), Positives = 387/804 (48%), Gaps = 100/804 (12%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E++ L + G + HVE AR+ P+ L GI+ + HQ ++
Sbjct: 8 ELLADLSAPLIRHGCLTHVERRPAREGRRGSFPEWTDPRLVLHLAERGITAPWIHQEQAA 67
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALS------HDLSSSALYMFPTKALAQDQLR 318
+ G++VV+AT T+SGKSL Y LP L A+ ++ALY+ PTKALA DQL
Sbjct: 68 RLAHDGQDVVLATATASGKSLAYLLPTLTAIGAREIDPGAPRATALYLSPTKALAADQLT 127
Query: 319 ALLAMTKAF---DASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSR 375
+ A+ DA I VYDGDT + R W+R + +++TNPDMLH ILP H Q++
Sbjct: 128 NITALADGAGIRDARI--AVYDGDTPAEQRRWVRRHGTVVLTNPDMLHFGILPGHEQWAH 185
Query: 376 ILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGS 435
F +R+VVIDE H+Y+G FG H +++LRRL + YG+
Sbjct: 186 F-------------------FRALRYVVIDECHSYRGVFGSHVSMVLRRLR-RIAARYGA 225
Query: 436 DPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLR-------- 487
DP+FV ++AT+ANP L +E + DGSP A LW P + R
Sbjct: 226 DPTFVLASATTANPELSASRLIG-RDVETVTEDGSPRAGLTIGLWEPGTRTRVDGRGDPA 284
Query: 488 ------SVLNKSQTDMDDTRNAANKTSSPI-----SEVSYLFAEMVQHGLRCIAFCRSRK 536
N ++ D ++ ++ P+ SE + L A++V+ ++ + F RSR+
Sbjct: 285 RWEEPGRDANDAEEDEGPDQDGPSRREEPLRRSATSEAAALLADLVERDVQTLVFARSRR 344
Query: 537 LCELVLSYTREILEETAPHLVDS--------ICVYRAGYVAEDRRRIERDFFGGKLCGVA 588
ELV + R +L + A D+ I YR GY+A +RR +E G+L +A
Sbjct: 345 GAELVSTGARRLLGQKAEEGADARLADAAQRIAAYRGGYLARERRVLEDSLRSGELRALA 404
Query: 589 ATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERP---SLAVYVAFEGPLDQY 645
+TNALELGID+ +D + G+PG+ ASLWQQ GR+GRR+ SLA++VA E PLD Y
Sbjct: 405 STNALELGIDISGLDAVVVAGWPGTRASLWQQFGRAGRRQDSGGGSLALFVAREDPLDTY 464
Query: 646 FMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLK 705
+ +PE +F + +E D N V+ HL AA E + +E+ FG +TTL
Sbjct: 465 VVHHPETVFGAEVEAAVFDPANPYVMTPHLCAAASELAIR-DGEEEIFGPTARELLTTLA 523
Query: 706 NRGYLSSDPSLDSSAKIFEYIGHEKMPSHTIS-IRAIESERYEVIDMQSNEVLEEIEESK 764
RG L S A + + E +H ++ +R E +++ E+L ++ +
Sbjct: 524 ARGVLRS------RATGWYWTLSES--AHELTDLRGSGGEPVRIVEEAGGELLGTVDAAS 575
Query: 765 AFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHV--------- 815
A QV++GAVY+HQG +Y+V L++ +A ++ D + T + + + +
Sbjct: 576 AHTQVHDGAVYLHQGRSYVVNRLDVDQAVAFVRREDPLHSTHPQSASTLRIRQVDREVPW 635
Query: 816 -SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYE 874
G + T DQ+T + + + L LP +
Sbjct: 636 KDGVRLCFGTVDVTDQVTGYQVRDVFTQA----------------VLAQHPLDLPPRTLT 679
Query: 875 SQAVWIQVPQSVKAVVEQNFSFRSG-LHAASHALLHVVPIYVRCNFSDLAPECPNPHDSR 933
++AVW VP+ E G LHAA HA + ++P+ C+ D+ H+
Sbjct: 680 TKAVWWVVPRERTDAAEIPAEELPGALHAAEHAAISMLPLLATCDRWDIGGLSAAQHEDT 739
Query: 934 YFPERILLYDRHPGGTGVSKQVTD 957
P I +YD PGG G +++ D
Sbjct: 740 GEPT-IFVYDGAPGGAGFAERGAD 762
>gi|345870451|ref|ZP_08822403.1| DEAD/DEAH box helicase domain protein [Thiorhodococcus drewsii AZ1]
gi|343921654|gb|EGV32367.1| DEAD/DEAH box helicase domain protein [Thiorhodococcus drewsii AZ1]
Length = 806
Score = 350 bits (898), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 251/817 (30%), Positives = 402/817 (49%), Gaps = 109/817 (13%)
Query: 181 SQSSTSSSHSFQRRCSDKSQLLPLEMVEHLRKGIGSQGQMVHVEDISARK------AVLV 234
+ +ST+S HS S LP+E ++ S+ + ISAR+ AV
Sbjct: 7 NDASTASRHS-------SSTALPVERLK-------SRLLAKYAARISARQVQPATQAVWR 52
Query: 235 EIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEA 294
E+P L SAL++ G+ +LYSHQ + + AG+++VVAT T+SGK+LCYN+PVL++
Sbjct: 53 ELPPDLTPALDSALRARGLERLYSHQRAAWDLARAGRHLVVATPTASGKTLCYNMPVLQS 112
Query: 295 LSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGV----YDGDTTQKDRMWLRD 350
+ + ALY+FPTKALAQDQ+ L+ + +A S G+ +DGDT R +R
Sbjct: 113 VLTE-GRKALYLFPTKALAQDQVAELMELGRALTESGGEGIRAFTFDGDTPGDARKAVRT 171
Query: 351 NARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAY 410
++++NPDMLH +ILP+H ++++ L +VV+DE H+Y
Sbjct: 172 RGDIVVSNPDMLHQAILPHHTKWAQFFEGLA-------------------YVVVDELHSY 212
Query: 411 KGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGS 470
+G FG H A + RRL R+C YG +P+F+F++AT ANP E L + +E I G+
Sbjct: 213 RGVFGSHVANVFRRLRRIC-RFYGVEPAFIFASATIANPAELAERLCG-APVEAILESGA 270
Query: 471 PCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIA 530
P ++ +LWNP V+N D+ R +A S+ I+ ++ + GL+ I
Sbjct: 271 PQGERHLLLWNP-----PVINP---DLG-IRASARSQSTRIARMA------AKLGLKAIV 315
Query: 531 FCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAAT 590
F RSR + E++ Y +++ ++ P + YR GY+ +RRR E+ G + V AT
Sbjct: 316 FARSRLMVEVITKYLKDVFDQD-PRNPPRVLAYRGGYLPSERRRGEQAMRAGTVDLVVAT 374
Query: 591 NALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYP 650
+ALELG+D+G +DV + G+PG++A+ Q+ GR+GRR RPSL V VA PLDQY M+ P
Sbjct: 375 SALELGVDIGALDVAILNGYPGTVAATMQRLGRAGRRLRPSLGVLVASSDPLDQYLMRNP 434
Query: 651 EKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNR-GY 709
E LF + E I +L H+ CAA E P FG G + G L Y
Sbjct: 435 EFLFGASPEHARIHPDQLLILLDHVRCAAFELP---------FGDGETFGAEDLGEMLSY 485
Query: 710 LSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQ--SNEVLEEIEESKAFF 767
L + L + ++ + P++ +S+R++ + V+D + ++ E++ A
Sbjct: 486 LRDEGVLQRQGARWYWVA-DSYPANAVSLRSVAEGNFVVVDTTDGAQTIIAEVDYGSAPG 544
Query: 768 QVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKIS 827
+YEGA+YM Q Y V++L+ + A + Y+T DYT + + +
Sbjct: 545 TLYEGAIYMVQSQPYQVEKLDWVGRKAFVTRTRADYYTDAIDYTRLKI-------LDRFE 597
Query: 828 KDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQV-PQSV 886
+ + + G+ ++ S + LP + +VW Q P ++
Sbjct: 598 GRLQGRGAVANGEVHLVHRYPGYKKIRYYSHDNVGYGNIALPDQEMHTTSVWWQAEPAAL 657
Query: 887 KAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLA-------------------PECP 927
+AV+ G A++AL HV + V DL +
Sbjct: 658 EAVLPDRQKAIEGFLGAAYALHHVAALRVMAELQDLGRAVGDGQGTWFAVVGNDGRGQMR 717
Query: 928 NPHD-------SRYFPERILLYDRHPGGTGVSKQVTD 957
P + +R F + LYD +PGG G+S + D
Sbjct: 718 GPDNEPLEIDGTRRFEPTLFLYDNYPGGVGLSAPLYD 754
>gi|448455078|ref|ZP_21594404.1| DEAD/DEAH box helicase [Halorubrum lipolyticum DSM 21995]
gi|445814193|gb|EMA64161.1| DEAD/DEAH box helicase [Halorubrum lipolyticum DSM 21995]
Length = 807
Score = 350 bits (897), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 240/786 (30%), Positives = 365/786 (46%), Gaps = 77/786 (9%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
+ +E LR +GQ+ + AR+ E+ L AL GI +LY HQAE+I
Sbjct: 3 DAIEWLRNRPFYEGQIAEHRRLPAREPAYREV--DLAPRMADALAKDGIDRLYRHQAEAI 60
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL--LA 322
A G +VV+AT T+SGKSL Y +P EA + D LY+ P AL DQ +L LA
Sbjct: 61 EAVRGGDDVVLATETASGKSLAYTVPAFEA-AMDRGGRTLYIGPQNALIADQEESLSDLA 119
Query: 323 MTKAFDASIDIGVYDGDTTQKDRMWLRD-NARLLITNPDMLHMSILPYHGQFSRILSNLR 381
F + + + Y G ++ ++ +RD +L++NPDMLH ++LPY G R
Sbjct: 120 HGLGFGSGVSVESYTGRLSRSEKRDVRDREPTVLLSNPDMLHYALLPYAG---------R 170
Query: 382 LIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVF 441
L + F + +VVIDE H+Y+G FG A+ LRRL R C +GS+P FV
Sbjct: 171 LWDW---------FFSSLEYVVIDEVHSYRGVFGSQVAMTLRRLARTCER-FGSNPQFVC 220
Query: 442 STATSANPREHCMELA--NLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDD 499
+AT NP EH + + + L+ D S + +VLWNP + D D
Sbjct: 221 CSATINNPVEHVATVTGRDPEGIALVDEDTSGRGPRDWVLWNP----------PEYDDDW 270
Query: 500 TRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LVD 558
+ + S +E LF ++V G + +AF R+R+ E + + L E L
Sbjct: 271 KERGSGRRKSSHAESKRLFCDLVTAGAQTLAFTRARQTAEQYATDSASDLRERGERGLAG 330
Query: 559 SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLW 618
+ Y+A + RR IE D G L GV +T+ALELG+DVG +D + G+PG+ S +
Sbjct: 331 KVGAYQAALTDDRRREIEADLHAGDLRGVWSTSALELGVDVGGLDAVILDGYPGTRMSAY 390
Query: 619 QQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCA 678
Q+AGR+GR + P+L V V E LDQY M+ P F++P E D +N ++L H+ CA
Sbjct: 391 QRAGRAGRGDDPALVVMVGGEDQLDQYLMRNPSDFFEAPPEDAICDPENDQLLPGHVACA 450
Query: 679 ALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISI 738
A E LS DE++FG + L + G L D I P ++S+
Sbjct: 451 ADESWLS-PGDERFFGESFPGVVADLTDEGTLDRREVADG---IRWTHAGSSSPQQSVSL 506
Query: 739 RAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQK 798
R ++ID NE + + A + GA+Y QG TY V L+L +A Q
Sbjct: 507 RTAGDREVDLIDSSRNETVASLGFGDALRDAHPGAIYHQQGRTYEVTNLDLDRDVAELQS 566
Query: 799 ADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSG 858
+ Y+T+ DI V NA + + TVT GF R +G
Sbjct: 567 SWADYYTQPLTEKDIAV----NADLGERELSARPDVPVRFADVTVTERITGFVRKDAKTG 622
Query: 859 IIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQ-------------------------- 892
L LP+ + ++A++ VP V++ +
Sbjct: 623 ESLGESTLDLPETTLRTKALYFPVPADVESEMRALGGRDGTDRDTEGTEGTETATDGGES 682
Query: 893 ----NFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGG 948
+F G+HAA H ++ + P ++ C+ +D+ P+ + +YD HPGG
Sbjct: 683 LPGGEHAFNGGIHAAEHGIISLFPFHLLCDRADVG-GISTPYHPHTDAPAVFVYDGHPGG 741
Query: 949 TGVSKQ 954
G++++
Sbjct: 742 VGLTRR 747
>gi|397669190|ref|YP_006510725.1| DEAH-box helicase [Propionibacterium propionicum F0230a]
gi|395141481|gb|AFN45588.1| DEAH-box helicase [Propionibacterium propionicum F0230a]
Length = 743
Score = 349 bits (896), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 235/761 (30%), Positives = 371/761 (48%), Gaps = 99/761 (13%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATM 278
+ V V A V + P L ++ GI + + HQAE + G++ + T
Sbjct: 11 EAVAVRRRPASPGVWADWPGWLDAELVDGFRAAGIDRPWRHQAEFAELARVGRHAAICTP 70
Query: 279 TSSGKSLCYNLPVLEALSHDLSS----------SALYMFPTKALAQDQLRALLAMTKAFD 328
T SGKSL Y +PVL AL + +ALY+ PTKALA DQ RA +
Sbjct: 71 TGSGKSLAYLMPVLAALREPRAGRGRGFALRRPAALYLAPTKALAHDQARAAGVLAPG-- 128
Query: 329 ASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLV 388
S+ IG DGD+ + +R + R++A L++TNPDMLH S+LP H ++S +L LR
Sbjct: 129 -SVRIGALDGDSDETERRFAREHANLVLTNPDMLHFSVLPNHRRWSALLGGLR------- 180
Query: 389 TTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSAN 448
+VVIDEAH Y+G FG H A +LRRL RL + +G++P+ + S+AT+ N
Sbjct: 181 ------------YVVIDEAHRYQGVFGAHVAQVLRRLRRLAA-AHGAEPTILLSSATAPN 227
Query: 449 PREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTS 508
+ L +E++ + +P A + VLW P+ L N+
Sbjct: 228 AADFGGALIGEDRVEVVADSAAPVAARTVVLWQPSVSL------------------NR-- 267
Query: 509 SPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYV 568
+ S L A +V + +AF SR EL E+ E I YR GY+
Sbjct: 268 ----DTSRLLAGLVDDATQTLAFVASRAGAELTSLEAAELAAEPG-----RIASYRGGYL 318
Query: 569 AEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRE 628
A +RR +E G++ G+A TNALELGIDV ID L GFPG +++ WQQAGR+GR
Sbjct: 319 AMERRDLEAALQTGEILGLATTNALELGIDVSGIDAVLVSGFPGKLSAFWQQAGRAGRAG 378
Query: 629 RPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIY 688
R +L V +A E PLD Y +++PE +F +P+E QN VL HL AA E PL+
Sbjct: 379 REALVVLLARENPLDAYLLQHPELIFDAPVEAAICHPQNPHVLGPHLAAAAQEQPLT-AA 437
Query: 689 DEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEV 748
DE++FG T L +L++ L + + ++ H I++R+ E+
Sbjct: 438 DERWFGP------TALPLVAHLAAGKVLRDRGGTWYWTRPDRAVDH-INLRSTTPRPVEI 490
Query: 749 IDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTR 808
I+ + +V+ ++ + A V+ GAVY+HQG +++V EL++ + A+ A ++T+
Sbjct: 491 IERSTGQVIGVVDPAAADRTVHRGAVYLHQGRSFVVTELDVEERSAMVVAAHNPWYTQAE 550
Query: 809 DYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRL-WRGSGI-------- 859
DI + ++Q ++ TT FG RL W+ +G
Sbjct: 551 SAQDI-----------AVLREQRSRPLGS------TTLHFGDVRLSWQVTGYLRRDETTH 593
Query: 860 -IFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQN-FSFRSGLHAASHALLHVVPIYVRC 917
+ D+ L P+++ +QAVW VP++++ + + HAA H + ++P + C
Sbjct: 594 EVLDSTPLDCPEHTLTTQAVWWSVPETLERELGWGPLQLGAAAHAAEHTSIGLLPAFAPC 653
Query: 918 NFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDM 958
+ D+ H + ++D PGG G + + ++
Sbjct: 654 DRWDIGGISTARHPDTGL-ATVFVHDGLPGGAGFAARAHEV 693
>gi|384439203|ref|YP_005653927.1| Helicase superfamily 1 and 2 ATP-binding protein [Thermus sp.
CCB_US3_UF1]
gi|359290336|gb|AEV15853.1| Helicase superfamily 1 and 2 ATP-binding protein [Thermus sp.
CCB_US3_UF1]
Length = 733
Score = 349 bits (896), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 226/711 (31%), Positives = 362/711 (50%), Gaps = 96/711 (13%)
Query: 248 LKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMF 307
L++ G+ K ++HQ E+++ AG+N+V+A T++GKSL + PVL+A +++L +F
Sbjct: 50 LQALGL-KPFTHQKEALLQVEAGRNLVMAYSTAAGKSLVFQAPVLKAALE--GATSLLLF 106
Query: 308 PTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSIL 367
PTKALA DQLR L AM + + YDGDT+ + R R+ +L++NPDMLH +L
Sbjct: 107 PTKALAHDQLRRLRAMAETLGVK-GVYPYDGDTSGELRRKAREEGLVLLSNPDMLHFGLL 165
Query: 368 PYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCR 427
P HG ++ LS LR ++V+DE HAY+G FG H AL+L RL R
Sbjct: 166 PRHGDWAPFLSRLR-------------------YLVLDELHAYRGVFGTHVALVLFRLLR 206
Query: 428 LCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLR 487
L H YG++P + ++AT N REH L L +EL + +++ VL L
Sbjct: 207 LARH-YGANPQVIAASATIGNAREHAETLTGLPFVELRETVAR-SEREVLVL------LP 258
Query: 488 SVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTRE 547
L+K + SP+ E +YL + + GLR + F +RK EL+ Y
Sbjct: 259 KALDKK----------GERRRSPLLEAAYLARALAEGGLRGLVFVGARKSAELIARY--- 305
Query: 548 ILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLH 607
A H ++ YRAGY A +RRR+E G++ + +T+ALELG+D+G +D +
Sbjct: 306 -----AAH--PAVRPYRAGYTARERRRLEEALKRGEVRVLVSTSALELGVDIGELDAVVL 358
Query: 608 LGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQN 667
+G+PGS+A+ WQ+AGR+GR ER +L V++ E PLD+YF+ PE L SP E D N
Sbjct: 359 VGYPGSVAAFWQRAGRAGRGERRALVVFIPREDPLDEYFLHRPELLLGSPPEAAVADPTN 418
Query: 668 HKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIG 727
+ HL AA E PLS E+ G + + + R Y
Sbjct: 419 PVLCPLHLHAAAWEMPLS---REEVLCPGALAELRAKEGRWYTP---------------- 459
Query: 728 HEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKEL 787
++ P +S+R + + + EVL ++E +A+++ + GA+Y+H G +YLV+ +
Sbjct: 460 -KRHPHREVSLRGLGATF--TLRGPEGEVLGYLDERQAYWEAHPGAIYLHGGESYLVRNV 516
Query: 788 NLSSKIALCQKADLKYFTKTRDYTDIHVSGGNN-AYATKISKDQLTKTTAQALACTVTTT 846
+ + A Y+T+ R T + V G + + + L + + V
Sbjct: 517 DAKRREVWLLPALEDYYTEPRAETHLEVLEGEPVGHGVWVGRVVLR----ERVVAYVKKR 572
Query: 847 WFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHA 906
+F +G + + V L LP+ ++ ++A+W PQ+V G+HA HA
Sbjct: 573 FF--------TGSVLEEVPLELPEITFPTEALWFHPPQTVPP-----HRIPGGIHALEHA 619
Query: 907 LLHVVPIYVRCNFSDLA----PECPNPHDSRYFPERILLYDRHPGGTGVSK 953
++ ++P++V D+ P P P S P + +YD +PGG G ++
Sbjct: 620 MIGLLPLFVLAERQDIGGLSYPFYPQPLPSGGGPT-LFVYDGYPGGVGYAR 669
>gi|152964452|ref|YP_001360236.1| DEAD/DEAH box helicase [Kineococcus radiotolerans SRS30216]
gi|151358969|gb|ABS01972.1| DEAD/DEAH box helicase domain protein [Kineococcus radiotolerans
SRS30216]
Length = 812
Score = 349 bits (895), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 251/744 (33%), Positives = 361/744 (48%), Gaps = 53/744 (7%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKL-YSHQAESIMASLAGKNVVVATMTS 280
HVE++ AR P A D A G L + HQ E+ A AG++ V++ T+
Sbjct: 20 HVEELPARAGERSPWP-AWADPEVVAALQRGTGGLPWRHQVEAAEAVWAGRSTVLSAGTA 78
Query: 281 SGKSLCYNLPVLEAL-------SHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDI 333
SGKSL + LPVL +L + ++ALY+ PTKALA DQ L A+ A
Sbjct: 79 SGKSLAFQLPVLTSLRATAAAAPNGKGATALYLSPTKALAADQDARLRALGLHDRAGPVT 138
Query: 334 GVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVY 393
YDGDT + R W+RD+A L++TN DMLH S+LP H +++ L LR
Sbjct: 139 STYDGDTPPEVRRWIRDHAGLVLTNVDMLHRSVLPGHERWASFLRRLR------------ 186
Query: 394 LIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHC 453
FVV+DE H Y+G FG H A +LRRL + YGSDP FV ++AT A P
Sbjct: 187 -------FVVVDELHTYRGVFGGHAAAVLRRLR-RIAARYGSDPVFVLASATVAEPATTA 238
Query: 454 MELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISE 513
L + + ++ D S LW P + +T++ +E
Sbjct: 239 RRLTGVD-VHVVAGDTSARPPVSVALWEPPLRPAPPAAEGAAPAHPPATPERRTAT--AE 295
Query: 514 VSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRR 573
+ L A++V G+R +AF RSR E V + R LEE P L + YR GY+ EDRR
Sbjct: 296 TADLLADLVAEGVRTLAFVRSRAGAESVAAGARRRLEEVDPALAGRVAAYRGGYLPEDRR 355
Query: 574 RIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLA 633
+E G++ G+A TNALELG+DV +D L G+PG+ AS WQQ GR+GRR P+L
Sbjct: 356 ALEEGLRSGRVVGMATTNALELGVDVAGLDAVLVAGWPGTRASFWQQIGRAGRRGEPALG 415
Query: 634 VYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYF 693
V V+ + PLD Y +PE +F + +E +D N VL HL AA E PL+ D F
Sbjct: 416 VLVSRDDPLDTYLAHHPEAVFGAGVEATVLDPDNAYVLAPHLAAAAQELPLTEA-DLDLF 474
Query: 694 GSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQS 753
+ L RG L A + + ++ T A S R V++ +
Sbjct: 475 SPAARDVVDLLVRRGLLR------RRAAGWYWTRRDRACDLTDLRGAGGSVR--VVEEGT 526
Query: 754 NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQ-KADLKYFTKTRDYTD 812
VL +E A QV++GAV++HQG TY+V L+L ++A+ + D Y T R +D
Sbjct: 527 GRVLGTVEAGSADSQVHDGAVHVHQGRTYVVDHLDLEDQLAVVHPEPDPGYTTHARSSSD 586
Query: 813 IHV-SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKY 871
+ V S G+ A + T + VT+ GF R G+G + L LP+
Sbjct: 587 VRVLSTGSTRRAGPV--------TLSSGVVEVTSQVTGFLRRRVGTGAVIGERSLDLPRR 638
Query: 872 SYESQAVWIQVPQSV-KAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPH 930
++AVW + V + V+ LHAA HA + ++P+ C+ DL H
Sbjct: 639 RLRTRAVWWTLDADVAEGVLGDGTRLPGALHAAEHASIGLLPLLATCDRWDLGGLSTALH 698
Query: 931 DSRYFPERILLYDRHPGGTGVSKQ 954
+ P + ++D PGG G + +
Sbjct: 699 EDTGHPT-VFVHDAVPGGAGFADR 721
>gi|149239696|ref|XP_001525724.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146451217|gb|EDK45473.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 1183
Score = 349 bits (895), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 247/777 (31%), Positives = 393/777 (50%), Gaps = 94/777 (12%)
Query: 235 EIPDALLDNTKSALKSTGIS---KLYSHQA---ESIMASLAGKNVVVATMTSSGKSLCYN 288
E+ DAL + S GIS LY+HQA + ++ + N++++T+T+SGKSL Y
Sbjct: 332 ELSDALFN-------SKGISIEDGLYTHQALALDELLDDASQSNLIISTLTASGKSLVYQ 384
Query: 289 LPVLEALSHDLS-------SSALYMFPTKALAQDQLRA----LLAMTKAFDASIDIGVYD 337
LP+L ++ D++ ++AL++FPTKALAQDQ+R L + I I YD
Sbjct: 385 LPILNSILWDITNHVQGRHATALFIFPTKALAQDQIRHFQTFLTHLPSHLTRPIVINTYD 444
Query: 338 GDTTQKDRMWLRDNARLLITNPDMLHMSILPYH--GQFSRILSNLRLIAFSLVTTEVYLI 395
GDT +R ++ ++ +L TNPD +H SILP H G + + L+
Sbjct: 445 GDTPFLERNKIQRDSDILFTNPDTIHASILPNHHFGAWVEFIKALK-------------- 490
Query: 396 FLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVY---GSDPSFVFSTATSANPREH 452
FVV+DE H YKG FG + ++ RL R+ H+ G +V +AT ANP H
Sbjct: 491 -----FVVMDELHVYKGIFGINVGYVMARLNRI-KHILCPEGPPIRYVSCSATIANPILH 544
Query: 453 CMELANL---STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSS 509
+ +L + + IQ+DGS +K ++WNP + N + D+ + S
Sbjct: 545 FKTICSLPEDAKVVHIQDDGSAKCEKRLIVWNPPVLMN---NAGERGPADSNSNLIPRVS 601
Query: 510 PISEVSYLFAEMVQH--GLRCIAFCRSRKLCELVLSYTREILEETAPHLV----DSICVY 563
PI+E++ L ++ GLR I FC R + E+++ R L+ + + I Y
Sbjct: 602 PIAELAKLLLTILTELPGLRVIVFCPIRVVAEMMMREVRTQLQSSQIKQLGISQSDIMSY 661
Query: 564 RAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGR 623
R GY DRR IE+ F G+L + ATNALELGID+ +DV + GFP +L QQ GR
Sbjct: 662 RGGYSKSDRRIIEKKMFDGQLRAIVATNALELGIDLSDLDVVITCGFPVLKLNLHQQFGR 721
Query: 624 SGRRE--RPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDA---QNHK--VLEQHLV 676
+GR + SLA++V P+DQY++++ +L + E +D+ H +LE+HL
Sbjct: 722 AGRGKLASGSLAIFVPMRSPIDQYYIEHAHELPQRSYEDLCVDSLRDMEHGLLLLERHLQ 781
Query: 677 CAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTI 736
CAA EH L + D ++F S G T + + L+ LD K + P+ +
Sbjct: 782 CAAYEHALDKVDDYQWF----SQGKTLEQFQKLLAEQLVLDVDEKYKTHPHFMPKPTKLV 837
Query: 737 SIRAIESERYEVIDMQSNE--VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIA 794
IRAIE E ++D+ +N V+EE+E + F VYEG +++HQG YLVKE N K
Sbjct: 838 PIRAIEDETVAIVDITNNRNIVIEEVELLRTTFTVYEGGIFLHQGQPYLVKEFNHKDKYC 897
Query: 795 LCQKADLKYFTKTRDYTDIHVSGGNNAYATK-ISKDQLTKTTAQALACTVTTTWFGFYRL 853
++ ++ + T RDYTD+ K + +Q T A +T FGF+++
Sbjct: 898 KVERVNVDWTTSQRDYTDVDPEEVELVKPIKPVHMNQQLDTPAFFGKIQITMKVFGFFKV 957
Query: 854 WRGSGIIFDTVELYLPKYSYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVP 912
R I+ + VE+ P ++ W+ V Q+++ + + S G+HAA+H +++++P
Sbjct: 958 NRKEEIL-EVVEVKNPPVIAYAKGCWLNVSKQAIEIIRAKKLSASGGIHAAAHGIMNMLP 1016
Query: 913 IYVRCNFS--------DLAPECPNP-------HDSRYFPERILLYDR--HPGGTGVS 952
+++ S ++A EC P R P R++ YD + G+G S
Sbjct: 1017 LHINSARSTTSHAMDFEMATECKAPSKEFKATETKRKRPARLVFYDTKGNRNGSGYS 1073
>gi|291279950|ref|YP_003496785.1| DEAD/DEAH box helicase domain protein [Deferribacter desulfuricans
SSM1]
gi|290754652|dbj|BAI81029.1| DEAD/DEAH box helicase domain protein [Deferribacter desulfuricans
SSM1]
Length = 927
Score = 349 bits (895), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 238/765 (31%), Positives = 375/765 (49%), Gaps = 108/765 (14%)
Query: 206 MVEHLRKGIGSQGQMVHVE-DISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
++ +L+KG GQ + E +I KA I K AL GI LY HQA++
Sbjct: 5 LIPYLKKG--KIGQYIVFEREIGENKAKYKSIDIIQNQTIKDALNKNGIENLYLHQAKAY 62
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
G+N+++ T T+SGK+LCYNLP+LE + + + ALY+FP KAL DQ LL +
Sbjct: 63 RLLKNGENILITTPTASGKTLCYNLPILEDILEN-RAKALYLFPMKALGYDQKEKLLEIA 121
Query: 325 KAF-DASIDIGVYDGDTTQ-KDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRL 382
K D +++ + DGDT++ K R L ++ITN D++H +LP ++ +SNL+
Sbjct: 122 KFIPDFKLNVQILDGDTSKVKRRRILSSEPDIIITNIDIVHYYLLPKMDEWYNFISNLK- 180
Query: 383 IAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFS 442
++VIDE H Y+G FG H I RL R D + S
Sbjct: 181 ------------------YIVIDELHVYRGVFGAHFKNIFDRLKRFIP-----DVQVIAS 217
Query: 443 TATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRN 502
+AT NP E +L N++ I G+P A+K F+L NP
Sbjct: 218 SATVGNPLEFTNDLLNIN-FNHITESGAPTAKKYFLLINPEDI----------------- 259
Query: 503 AANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICV 562
P + +YL +++ G++ + F +SR E + Y I + DS+
Sbjct: 260 ------PPANIATYLIKTLIESGIKTLCFTKSRMQTESI--YKSLINNKNIKK--DSVSS 309
Query: 563 YRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAG 622
YRAG++ E+RR IE++F G L V +T+A ELGID+G ID T+ +G+PGS+ SLWQ+AG
Sbjct: 310 YRAGFLPEERREIEKNFRDGNLKAVISTSAFELGIDIGGIDATILVGYPGSLMSLWQRAG 369
Query: 623 RSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEH 682
RSGR SL + + LDQYF+KYPEKLF S E ID +N + +QH+ CAA E
Sbjct: 370 RSGRHGNDSLIILIPTNDALDQYFVKYPEKLFNSSFEDAIIDKENELINKQHIFCAAYEK 429
Query: 683 PLSLIYDEKYFGSG--LSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRA 740
P+S+ E Y+ S L S + Y+ SL I +K P + +R
Sbjct: 430 PISV--QENYYFSNKKLISSMVENSELFYVEDKNSL---------ITLKKFPHKEVDLRN 478
Query: 741 IESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKAD 800
Y + +N+++ KA+ + Y+GA+Y+H+G T++V +++ + A
Sbjct: 479 -SGHTYTI--TFNNKIIGTNSAKKAYTENYKGAIYLHRGETFIVDDIDHDKREIKVYPAK 535
Query: 801 LKYFTKT--RDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSG 858
Y+T+ TDI Y+TK K T + + V G+ ++ +G
Sbjct: 536 PNYYTRALIEKETDIL-----ETYSTK----NYEKYTCKFVRLKVKEQLKGYEKIEENTG 586
Query: 859 IIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGL----HAASHALLHVVPIY 914
+ VEL +E++ + V+E N++ + L HA H L+ ++P+
Sbjct: 587 VKLGKVELEENPIYFETKGI----------VIEFNYNSETNLMGSIHALEHGLIAMIPLK 636
Query: 915 VRCNFSDLA----PECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
+ C+ +D+ PE P + + I +YD +PGG G++ ++
Sbjct: 637 ILCDRNDIGGISYPEHPQTNKT-----SIFVYDGYPGGIGIANRI 676
>gi|291296115|ref|YP_003507513.1| DEAD/DEAH box helicase [Meiothermus ruber DSM 1279]
gi|290471074|gb|ADD28493.1| DEAD/DEAH box helicase domain protein [Meiothermus ruber DSM 1279]
Length = 768
Score = 349 bits (895), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 240/777 (30%), Positives = 386/777 (49%), Gaps = 103/777 (13%)
Query: 201 LLPL-EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPD-ALLDNTKSALKSTGISKLYS 258
LLP E LR G GQ+ V + A E P A + S + + + +S
Sbjct: 7 LLPYTSYAEWLRDLEGYAGQLAFVRLLPA------EPPQKAAYNGVFSGVLAALELQPFS 60
Query: 259 HQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLR 318
QAE+ G+++V+AT T+SGKSL + PVL+A+ +AL ++PTKALA DQL
Sbjct: 61 FQAEAFAVIEQGQHLVMATSTASGKSLVFQAPVLKAVLE--GQTALLLYPTKALAHDQLG 118
Query: 319 ALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILS 378
L M + + + I YDGDT R R+ R L+TNPDMLH +LP HG+++ L+
Sbjct: 119 RLRQMGRVLEVADRIYAYDGDTPDSQRKKAREQGRALLTNPDMLHFGLLPRHGEWAAFLA 178
Query: 379 NLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPS 438
LR ++V+DE HAY+G FG HTALIL+RL RL H YG+ P
Sbjct: 179 RLR-------------------YIVLDELHAYRGVFGSHTALILQRLLRLAWH-YGARPQ 218
Query: 439 FVFSTATSANPREHCMELANLSTLELIQNDGSP-CAQKLFVLWNPTSCLRSVLNKSQTDM 497
+ ++AT ANP EH L+ LE +Q SP A++ F +W P + + N+
Sbjct: 219 VIAASATIANPAEHAQ---GLTGLEFVQITASPRGAEREFAVWVPKALDKEGKNRR---- 271
Query: 498 DDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLV 557
SP E + L + GLR + F +R+ ELV Y +
Sbjct: 272 -----------SPNLEAALLARHAAEQGLRTLIFTNARRTAELVARYAAD---------- 310
Query: 558 DSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASL 617
D + YRAGY A DRR++E+ G + + +T+ALELG+D+G ++V + LG+PGS++S
Sbjct: 311 DRVRPYRAGYTAADRRKLEQALQEGTVRVLVSTSALELGVDIGGLEVVVLLGYPGSVSSF 370
Query: 618 WQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVC 677
WQ+AGR+GR ++ +L +++ E P+D YF ++PE L E D N + H C
Sbjct: 371 WQRAGRAGRGQQRALVLWIPREDPMDAYFEQHPELLLTGAPESAIADPDNPTLFPLHAHC 430
Query: 678 AALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTIS 737
AA E P++L + + + + P ++ ++F + + P +
Sbjct: 431 AARELPIALPVEAS------TQPLDPFYKPWHNIQPPLIEKHRRLFSTV---RNPHQALI 481
Query: 738 IRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQ 797
+R + + + D + ++L ++E +A+++ + GAVY+HQG YLV+ L+L + +
Sbjct: 482 LRGF-GKTFSLRD-NTGKLLGTLDERQAYWEAHPGAVYLHQGEGYLVRNLDLERREIVLL 539
Query: 798 KADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGS 857
Y+T+ R T+I V G ++ L ++ T G+ + S
Sbjct: 540 PGLEDYYTQPRAETEIEVLQG---------EEMLEGVWVGSVLLRERVT--GYVKKRFVS 588
Query: 858 GIIFDTVELYLPKYSYESQAVW------IQVPQSVKA--VVEQNFSFR---------SGL 900
++ + V L +P+ +++++AVW + V +V+A VE + R S +
Sbjct: 589 EVVLEEVALLMPELTFQTEAVWFHPCLGLAVLPTVEAGNPVEPRWPERGFLTEALVPSAI 648
Query: 901 HAASHALLHVVPIYVRCNFSDLA----PECPNPHDSRYFPERILLYDRHPGGTGVSK 953
HA H L+ ++P++V D+ P P P S P I +YD +PGG G ++
Sbjct: 649 HALEHTLIGLLPLFVLAERQDIGGVSYPFYPRPLPSGSGPT-IFIYDGYPGGVGYAR 704
>gi|383456141|ref|YP_005370130.1| DEAD/DEAH box helicase [Corallococcus coralloides DSM 2259]
gi|380735105|gb|AFE11107.1| DEAD-box ATP dependent DNA helicase [Corallococcus coralloides DSM
2259]
Length = 806
Score = 349 bits (895), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 239/766 (31%), Positives = 381/766 (49%), Gaps = 85/766 (11%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+VH AR V +P+ L + ALK G+ +L+SHQAE+ + G+++V+AT T
Sbjct: 41 IVHDAVTPARSGVFAPLPEGLSPQVRDALKRRGVEQLFSHQAEAYERARDGESLVIATPT 100
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGD 339
+SGKSLCYNLP+L+ + + + ALY+FPTKAL++DQ +L A + +DGD
Sbjct: 101 ASGKSLCYNLPLLDRFAREPEARALYLFPTKALSRDQEESLRAFMREAGLGHGAITFDGD 160
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T R R+ A +++TNPDMLH ILP+H ++R+ +NL
Sbjct: 161 TPGDARRAARERAGVVLTNPDMLHTGILPHHANWARLFANL------------------- 201
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
R+VVIDE H Y+G FG H A +LRRL R+ + +G+ P+F+ ++AT NP+ H +
Sbjct: 202 RYVVIDELHTYRGVFGSHLANVLRRLQRV-ARFHGASPTFILASATIGNPKAHAERMLG- 259
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
+ L+ G+P ++ +++NP V+N +S + L +
Sbjct: 260 REVALVSESGAPSGERRVLVYNP-----PVVNAE----------LGIRASYLKSAVRLTS 304
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTRE--ILEETAPHLVDSICVYRAGYVAEDRRRIER 577
++V+ G+ + F +SR E++L Y R+ + E+ P L+ YR GY+ RR E
Sbjct: 305 DLVRAGVSTLLFGQSRNNVEVMLKYLRDRFVEEKLDPSLIQG---YRGGYLPGTRRATEA 361
Query: 578 DFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVA 637
G++ V ATNALELGID+G +D + G+PGS+A+L Q+ GR+GRR SLA+ V
Sbjct: 362 AMRAGEVRCVVATNALELGIDIGSLDAVVCAGYPGSVAALAQRFGRAGRRGMGSLALLVT 421
Query: 638 FEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGS-- 695
PLDQYF P L +P+E ID N ++L QHL CAA E P + FG
Sbjct: 422 SSAPLDQYFAADPRALTGAPVEHARIDPDNVEILVQHLKCAAFELPFE---EGDAFGDVP 478
Query: 696 --GLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQS 753
+ + L + + + ++F + + P+H +S+R++ + VI+ +
Sbjct: 479 VENTTEALDFLTQHQVVHPSQAPEGGRRMFHW-SSDAYPAHHVSLRSVGWDNVVVIERGT 537
Query: 754 NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDI 813
++ L E++ A Q++E A+Y H Y V+ L+L + A +K YFT T++
Sbjct: 538 DKTLAEMDFRSAHTQLHEQAIYQHDSEQYQVEMLDLENHKAFVRKVAPDYFTDA--MTNV 595
Query: 814 HVSGGNNAYATKISKDQ---LTKTTAQALA-CTVTTTWFGFYRLWRGSGIIFDTVE---- 865
VS I +DQ L L +V G+ + I F T E
Sbjct: 596 RVS--------VIQEDQGAPLGPALHAGLGEVSVIEKVVGYKK------IKFHTHENVGY 641
Query: 866 --LYLPKYSYESQAVWIQVPQS-VKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDL 922
+ LP+ + A+W+ VP++ V+ + + L AL V + + + DL
Sbjct: 642 GDVRLPEMQMHTSALWLTVPEAVVRNMDAPRPAVIDALRGLGSALRTVACVGLMSDPRDL 701
Query: 923 A--------PECPNPHDSRY-FPERILLYDRHPGGTGVSKQVTDMK 959
P+ P D F + LYD PGG G++ ++ D +
Sbjct: 702 GRTLGSKDEPDGPPRKDGGVGFDPTLFLYDNVPGGVGLAARLYDQR 747
>gi|289706185|ref|ZP_06502549.1| helicase/secretion neighborhood putative DEAH-box helicase
[Micrococcus luteus SK58]
gi|289557097|gb|EFD50424.1| helicase/secretion neighborhood putative DEAH-box helicase
[Micrococcus luteus SK58]
Length = 863
Score = 348 bits (892), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 226/716 (31%), Positives = 353/716 (49%), Gaps = 56/716 (7%)
Query: 247 ALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYM 306
A + G+ + + HQ + + +G + V+AT T+SGKSL Y L V L+ D ++ALY+
Sbjct: 107 AFAARGVERPWLHQVRAATLAGSGTHTVLATGTASGKSLGYQLAVGTRLAADPRATALYL 166
Query: 307 FPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSI 366
PTKALA DQL + A+ + + YDGDT +DR+W R++A +L+TNPDMLH+ I
Sbjct: 167 APTKALAADQLTSWRALERDGAPGLRAAPYDGDTALQDRIWAREHATVLMTNPDMLHVGI 226
Query: 367 LPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLC 426
LP+H +++ NL FVV+DE+H Y+G FG ++LRRL
Sbjct: 227 LPHHERWAAFFRNLA-------------------FVVVDESHTYRGVFGSQVGILLRRLR 267
Query: 427 RLCSHVYGSDPSFVF--STATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTS 484
R+ +H G P VF ++ATSA+P H L + + D SP W P
Sbjct: 268 RIAAHYRGDRPETVFIGASATSADPAGHFARLIG-APATAVTEDASPHGAVTVAFWEP-- 324
Query: 485 CLRSVLNKSQTDMDDTR--NAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVL 542
++ D R N A S ++ + L ++ +R +AF RSR+ E +
Sbjct: 325 -----------ELTDRRGENGAPVRRSAMAAAADLVTDLALQQVRTLAFIRSRRGAEAIA 373
Query: 543 SYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHI 602
S + LEE P L I YR+GY+ E+RR++E D G+L G+A+T ALE+GIDV +
Sbjct: 374 SAAKRQLEEVEPGLGTRIAAYRSGYLPEERRQLEADLRSGRLLGMASTPALEMGIDVAGL 433
Query: 603 DVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCH 662
D + G+PG+ AS +QQ GR+GR + +LA +VA + PLD + + +PE +F +E
Sbjct: 434 DAVVVAGWPGTRASFFQQIGRAGRGGQDALAFFVASDDPLDTFVVDHPEAVFDLGVEDTV 493
Query: 663 IDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSG--LSSGITTLKNRGYLSSDPSLDSSA 720
+D +N +L L AA E P++ +FG + + + L +G L P+
Sbjct: 494 VDPENPHLLGPQLCAAAAELPIT-PEAFGWFGEPERVRALLDVLVEQGLLRRRPA----- 547
Query: 721 KIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGH 780
+ H + + +S+R ++ID +S +L ++ + +Q + GAVY+HQ
Sbjct: 548 --GWFWTHPEHAAGMVSLRDDGGGPMDIIDAESGALLGTMDSPQTHYQAHPGAVYVHQDR 605
Query: 781 TYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALA 840
TYLV+EL+ + + +A + T+ RD T+I + A D T L
Sbjct: 606 TYLVEELDEDAHAVVVTRAWPDFTTQARDVTEIEI------VAVHRRLDAREGTLRWCLG 659
Query: 841 -CTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVP-QSVKAVVEQNFSFRS 898
V T F R SG + L LP + AVW Q + A
Sbjct: 660 DVQVRTQVVSFQRKALASGEVLGEEPLDLPARDLLTSAVWFQAASDELIAAGLTTDRLPG 719
Query: 899 GLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
LHAA HA++ ++P+ + D+ H P + +YD PGG G +++
Sbjct: 720 ALHAAEHAMIGMMPLVASNDRWDIGGVSMVLHPDTGSPA-VFVYDGRPGGAGFAER 774
>gi|218887288|ref|YP_002436609.1| DEAD/DEAH box helicase [Desulfovibrio vulgaris str. 'Miyazaki F']
gi|218758242|gb|ACL09141.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 1198
Score = 347 bits (891), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 234/793 (29%), Positives = 376/793 (47%), Gaps = 111/793 (13%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATM 278
Q+ H + AR+A + L GI LY+HQA + AG++VVVAT
Sbjct: 78 QVTHHRALPAREADHAPNRRPWAKAIRDILARNGIGDLYTHQARATDLIRAGRHVVVATP 137
Query: 279 TSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAF--DASIDIGVY 336
T+SGK+ YNLPVLE D + ALY+FP KALAQDQL +T A+ DA +Y
Sbjct: 138 TASGKTYVYNLPVLERFLSDPDARALYLFPLKALAQDQLSTFTGLTAAWPDDARPRAAIY 197
Query: 337 DGDTTQKDRMWLRDNA-RLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLI 395
DGDTT R +R N +L+TNP+MLH++ILP+H Q++ +L++L
Sbjct: 198 DGDTTDHFRRKIRQNPPTVLLTNPEMLHLAILPHHQQWTSLLASLA-------------- 243
Query: 396 FLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPRE---- 451
F+V+DE H Y+G G H A + RRL R+C+ YG+ P+FVF +AT NP E
Sbjct: 244 -----FIVVDEVHTYRGVLGAHMAQVFRRLLRVCAR-YGAHPTFVFCSATVGNPGELAAN 297
Query: 452 ----------------------------------HCMELANLSTLEL-------IQNDGS 470
H +S E+ ++
Sbjct: 298 LTGLGGDLENKNLVGEGVSFPHTPIPPKFSNEAIHAPHPTGISGHEVHADSAKGVKGARP 357
Query: 471 PCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNA-ANKTSSPISEVSYLFAEMVQHGLRCI 529
PC + SC +V+ +S N SP + L + GLR I
Sbjct: 358 PCGEA----GGSASCDINVITESGAPQGLRHFVFVNPDDSPSTAAIQLLRAALARGLRTI 413
Query: 530 AFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAA 589
+C+SR++ EL+ + E+ P+ D I YRAG++ E+RR IE GG L V +
Sbjct: 414 VYCQSRRMTELISMWA---AEKAGPYR-DRISAYRAGFLPEERRDIEARMAGGDLLAVIS 469
Query: 590 TNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKY 649
T+ALELGID+G +D+ + +G+PG++ S Q+ GR GR ++ S + VA E LDQYF+++
Sbjct: 470 TSALELGIDIGGLDLCILVGYPGTVMSTLQRGGRVGRAQQESAVILVAGEDALDQYFVRH 529
Query: 650 PEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGY 709
P + F P E ++ N + ++H+ CAA E PL DE + + ++
Sbjct: 530 PNEFFDRPAEHAVVNPDNPVIAKRHIECAAAELPLPA--DEPWLAAPGAATALAELEAEG 587
Query: 710 LSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQV 769
L + SA + K P + +R + + D N V+ ++ +A+ +
Sbjct: 588 L-----VLRSADGTTLLAARKRPHRHVDLRG-SGNTFTIEDGDGN-VIGSVDGHRAYRET 640
Query: 770 YEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFT-----KTRDYTDIH---VSGGNNA 821
+ GAVY+H+G ++++ L+ ++ + ++A + +FT KT + DIH V+ G
Sbjct: 641 HPGAVYLHRGRSWVITRLDPGAQKVVAEQARVSWFTRVRANKTTEILDIHDQCVACGTRV 700
Query: 822 YATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQ 881
+ K+ VT T G+ + + V L P + +E++ +W +
Sbjct: 701 FLGKLR---------------VTETITGYEKRSVSGQRLLSVVPLDAPPFVFETEGLWFE 745
Query: 882 VPQSVKAVVEQN-FSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERIL 940
+P + + E F +HA HA + ++P+ V + +DL P ++ +
Sbjct: 746 IPDAARIATENELLHFMGAIHALEHAAIGILPLLVMTDRNDLG-GISTPMHAQVGRPAVF 804
Query: 941 LYDRHPGGTGVSK 953
+YD PGG G+++
Sbjct: 805 IYDGLPGGAGLTR 817
>gi|448435935|ref|ZP_21586951.1| DEAD/DEAH box helicase [Halorubrum tebenquichense DSM 14210]
gi|445683095|gb|ELZ35498.1| DEAD/DEAH box helicase [Halorubrum tebenquichense DSM 14210]
Length = 821
Score = 347 bits (890), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 237/801 (29%), Positives = 374/801 (46%), Gaps = 93/801 (11%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
+ +E LR +GQ+ + AR+ ++ L AL G+ +LY HQAE+I
Sbjct: 3 DAIEWLRNRPFYEGQIADHRRLPAREPEFADV--DLEPRLADALADRGVDRLYRHQAEAI 60
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL--LA 322
A G +VV+AT T+SGKSL Y +P E + D + LY+ P AL DQ +L LA
Sbjct: 61 EAVRDGDDVVLATETASGKSLAYTVPAFEG-AMDRGARTLYIGPQNALIADQEESLSELA 119
Query: 323 MTKAFDASIDIGVYDGDTTQKDRMWLRDN-ARLLITNPDMLHMSILPYHGQFSRILSNLR 381
F + + + Y G ++ ++ +RD +L++NPDMLH ++LPY G R
Sbjct: 120 AGLGFGSRVSVDSYTGRLSRSEKRDVRDRRPTVLLSNPDMLHYALLPYAG---------R 170
Query: 382 LIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVF 441
L + F + +VVIDE H+Y+G FG AL LRRL R C +GS P FV
Sbjct: 171 LWDW---------FFSSLEYVVIDEVHSYRGVFGSQVALTLRRLARTCER-FGSSPQFVC 220
Query: 442 STATSANPREHCMELA--NLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDD 499
+AT NP +H + + + LI D S + +VLWNP + D D
Sbjct: 221 CSATINNPVDHVATVTGRDPDGIALIDEDASGRGPRDWVLWNP----------PEYDDDW 270
Query: 500 TRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LVD 558
+ + S +E LF ++V G + +AF R+R+ E + + L E L
Sbjct: 271 QERGSGRRKSSHTESKRLFVDLVTAGQQTLAFTRARQTAEQYATDSASDLRERGERDLAG 330
Query: 559 SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLW 618
+ Y+A + RR IE D G L GV +T+ALELG+DVG +D + G+PG+ S
Sbjct: 331 KVGAYQAALTDDRRREIENDLHAGDLRGVWSTSALELGVDVGGLDAVVLDGYPGTRMSAH 390
Query: 619 QQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCA 678
Q+AGR+GR + P+L V V E LDQY M+ P F +P E D +N +++ H+ CA
Sbjct: 391 QRAGRAGRGDDPALVVMVGGEDQLDQYLMRNPSDFFDAPPEDAICDPENGQLMPGHVACA 450
Query: 679 ALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYI-GHEKMPSHTIS 737
A E+ LS DE++FG + L + G L+ +AK ++ E P +++
Sbjct: 451 ADENWLS-PDDERFFGDSFPGVVADLTDEGVLNR----REAAKGTRWVHAGEASPQQSVN 505
Query: 738 IRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQ 797
+R E +I+ S E + + + A + GA+Y QG TY V EL+L +A Q
Sbjct: 506 LRTAEEREISLIERSSGETVATLGFADALRDAHPGAIYHQQGRTYEVVELDLDRDVAELQ 565
Query: 798 KADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGS 857
++ Y+T+ R DI V+ + A D + TVT GF R +
Sbjct: 566 QSWADYYTQVRSDKDIVVNDDLDERALSARPD----VPVRFADVTVTEQITGFVRKDAAT 621
Query: 858 GIIFDTVELYLPKYSYESQAVWIQVPQSV------------------------------- 886
G L LP+ + +++++ VP+ +
Sbjct: 622 GESLGESTLDLPETTLRTKSLYFPVPEDLEREMRALGDPLDGDAEAPGASGDPGPDADRD 681
Query: 887 -------------KAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSR 933
+ + ++F G+HAA H ++ + P ++ C+ +D+ PH
Sbjct: 682 AASDGGTVDGGDGEPIPGGEYAFNGGIHAAEHGIISLFPFHLLCDRADVG-GISTPHHPH 740
Query: 934 YFPERILLYDRHPGGTGVSKQ 954
+ +YD +PGG G++++
Sbjct: 741 TEGPAVFVYDGYPGGVGLTRR 761
>gi|117924043|ref|YP_864660.1| DEAD/DEAH box helicase [Magnetococcus marinus MC-1]
gi|117607799|gb|ABK43254.1| DEAD/DEAH box helicase domain protein [Magnetococcus marinus MC-1]
Length = 805
Score = 347 bits (890), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 235/783 (30%), Positives = 384/783 (49%), Gaps = 96/783 (12%)
Query: 206 MVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIM 265
++E L+KG +Q H++ I A+ A P+ L + +AL+ G+ +LY+HQ
Sbjct: 26 LLERLQKGY-AQRITGHIK-IPAQAARYAPFPEGLDASIVAALQGRGVQQLYTHQRGCWD 83
Query: 266 ASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTK 325
A AG++VVV T T+SGK+LCYNLPVL+ + + ALY+FPTKALAQDQL LL + +
Sbjct: 84 ALAAGEHVVVVTPTASGKTLCYNLPVLQGVRQR-QAKALYLFPTKALAQDQLAELLELNR 142
Query: 326 AFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAF 385
+ + +DGDT R +R ++I+NPDMLH +LP+H ++++ +L
Sbjct: 143 QQSLGVKVFTFDGDTPADARKAVRSKGDIVISNPDMLHQGVLPHHTKWAQFFESLA---- 198
Query: 386 SLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTAT 445
+VVIDE H Y+G FG H A +LRRL R+C+ Y P F+F +AT
Sbjct: 199 ---------------YVVIDETHTYRGVFGSHMANLLRRLKRICA-FYRVKPQFIFCSAT 242
Query: 446 SANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAAN 505
ANP++ L + + I G+P +K +LWNP V+N+ D+ R +A
Sbjct: 243 IANPQQLAEALLQ-APVTAITESGAPSGEKSILLWNP-----PVVNE---DLG-IRASAR 292
Query: 506 KTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRA 565
S+ ++ ++ V HG++ I F R+R + E++ Y ++I ++ P + I YR
Sbjct: 293 SQSTQLAHMA------VDHGVKTIVFTRTRLMVEVITKYLKDIFDKD-PRRPERIAAYRG 345
Query: 566 GYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSG 625
GY+ +RR +E+ G + V AT+ALELG+D+G + + G+PGSIA+ WQ+ GR+G
Sbjct: 346 GYLPSERRHVEQKLREGDVSCVVATSALELGVDIGDLACCVLNGYPGSIAATWQRLGRAG 405
Query: 626 RRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLS 685
RR +P+L + V LDQ+ +++P+ + E I +L H+ CAA E P
Sbjct: 406 RRNQPALGILVGASDALDQFIVRHPDFFSAASPEQARIAPDQLLILLDHVRCAAFELPFK 465
Query: 686 LIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESER 745
D + FG + ++ GYL + L + + + P++++S+R++
Sbjct: 466 ---DGESFGKEV-----LVELLGYLEEEGVLHHEGNQWHW-NADSYPANSVSLRSVADGN 516
Query: 746 YEVIDMQ--SNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKY 803
+ VID V+ E++ S A +YE A+YM Q Y V++L+ + A ++ Y
Sbjct: 517 FVVIDRTDGGQRVVAEVDYSAAAMTLYEKAIYMIQATPYQVEQLDWEGRKAFVKRTKADY 576
Query: 804 FTKTRDYTDIHV----SGGNNAYATKISKD-QLTKTTAQALACTVTTTWFGFYRLWRGSG 858
+T DYT + + G + A K + L + A F R +
Sbjct: 577 YTDAIDYTKLKILDRFEGEDRAGIEKGHGEVHLVRRVAG----------FKKIRYYTHEN 626
Query: 859 IIFDTVELYLPKYSYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRC 917
+ F +++LP + A+W ++ Q ++A + SG A++AL V + V
Sbjct: 627 VGFG--QIHLPDQEMHTTALWWRMQAQVLEAAFANRWQALSGFLGAAYALHTVAAVRVMA 684
Query: 918 NFSDLAPECPNPHDS---------------------------RYFPERILLYDRHPGGTG 950
DL + F + LYD +PGG G
Sbjct: 685 ERGDLGRAVGDDQAGWSATQDANRRGGLRDAEGQPLTLENLCGTFAPTLFLYDNYPGGIG 744
Query: 951 VSK 953
S+
Sbjct: 745 FSE 747
>gi|340795412|ref|YP_004760875.1| hypothetical protein CVAR_2457 [Corynebacterium variabile DSM
44702]
gi|340535322|gb|AEK37802.1| hypothetical protein CVAR_2457 [Corynebacterium variabile DSM
44702]
Length = 812
Score = 347 bits (890), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 240/740 (32%), Positives = 370/740 (50%), Gaps = 65/740 (8%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+ HV AR + V+ PD + + + L+ GI + +SHQ + + +VV+AT T
Sbjct: 47 LTHVRTEPARLSKPVDWPDWVDPDLRRHLEHEGIERPWSHQVTTANHARNSTDVVIATGT 106
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASID--IGVYD 337
+SGKSL Y L V +AL HD +S LY+ PTKALAQDQ +AL + + A D + YD
Sbjct: 107 ASGKSLGYQLAVTDALIHDRLASCLYLSPTKALAQDQRQALARLIASSPAMKDAVVATYD 166
Query: 338 GDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFL 397
GDT + R +R+ AR++I+NPDM+H SIL +++R+L NLR
Sbjct: 167 GDTPGEARRLIREEARVIISNPDMVHASILGNRERWTRLLRNLR---------------- 210
Query: 398 FIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELA 457
F+++DE H Y+G FG H +L+LRRL +H G+ P+ V ++AT+A+P L
Sbjct: 211 ---FLIVDECHVYRGVFGAHVSLVLRRLL-RLAHRAGARPTIVLASATTADPAGQAQRLT 266
Query: 458 NLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYL 517
T+ + + DGSP ++ LW P N + +P+ +
Sbjct: 267 GRPTVAVTE-DGSPRGERTVALWEPGFL---------------ENTVGEHGAPVRRAATT 310
Query: 518 FA-----EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDS---ICVYRAGYVA 569
A + G R + F RSR+ E+ + L T VD I YRAGY
Sbjct: 311 EAAAIMARTIAEGARTLTFVRSRRGAEITALACADDL--TGLGRVDDARRIASYRAGYTP 368
Query: 570 EDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRER 629
E RR +E+ G L G+AAT+ALELGIDVG +DV + GFPG++AS QQAGR+GRR +
Sbjct: 369 ESRRVLEKRLDDGDLLGMAATSALELGIDVGGLDVVVSCGFPGTVASFRQQAGRAGRRGQ 428
Query: 630 PSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYD 689
L V VA + P+D Y + +P L P+E D N VL H++CAA E PL+
Sbjct: 429 GCLVVMVASDNPMDTYLVHHPGDLLDHPVEASVFDPTNPYVLADHVLCAAAEAPLTDGEV 488
Query: 690 EKYFGSGLSSGIT-TLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEV 748
+ G ++G+ L ++G L P IF + ++IR ++ +
Sbjct: 489 TAFGGDVDATGVVRQLTDQGLLRRRPR-----GIFADVDAATGVHARVNIRGGSGDQVLI 543
Query: 749 IDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTR 808
+D S ++L ++ ++A +V++GAVY+HQG T++V EL+L+ +A +FT+
Sbjct: 544 VDTTSGQILGTVDAARAVSEVHDGAVYVHQGETFVVDELSLAESMAAVHPETPDWFTRAM 603
Query: 809 DYTDIHVSGGNNAYATKISKDQLTKTTAQALA---CTVTTTWFGFYRLWRGSGIIFDTVE 865
+ T+I + Y+T+ + + LA VT G+ R G + TV
Sbjct: 604 ETTEIRM---GQVYSTREIGGTDSAPSGIWLADVQVQVTHQVTGYQRR-TSDGEVLQTVP 659
Query: 866 LYLPKYSYESQAVWIQVPQSV--KAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLA 923
L +P ++A V V +E+ + LHAA HA + ++P+ C+ D+
Sbjct: 660 LEVPPQRLVTRAAAYTVDPGVLFDLGIEEPL-WPGTLHAAEHAAIGMLPLLATCDRWDIG 718
Query: 924 PECPNPHDSRYFPERILLYD 943
H FP + +YD
Sbjct: 719 GVSTVLHSDTGFPT-VFVYD 737
>gi|381160903|ref|ZP_09870135.1| helicase family protein with metal-binding cysteine cluster
[Thiorhodovibrio sp. 970]
gi|380878967|gb|EIC21059.1| helicase family protein with metal-binding cysteine cluster
[Thiorhodovibrio sp. 970]
Length = 802
Score = 347 bits (890), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 231/769 (30%), Positives = 378/769 (49%), Gaps = 96/769 (12%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
+ A +A + E+P L ++AL G+S LYSHQ +S + AG+++V+AT T+SGK+L
Sbjct: 31 LPASRACMAELPADLHPRLRAALDQRGLSGLYSHQRQSWDIARAGQHLVIATPTASGKTL 90
Query: 286 CYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIG----------- 334
CYNLPV++A+ + ALY+FPTKALAQDQ+ L + +A D G
Sbjct: 91 CYNLPVIDAVL-TRQAKALYLFPTKALAQDQVAELSELNQAGSGQADAGGEGTTLGIKAF 149
Query: 335 VYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYL 394
+DGDT R +R ++++NPDMLH +ILP+H ++++ +L
Sbjct: 150 TFDGDTPGDARKAVRTRGDIVLSNPDMLHQAILPHHTKWAQFFESLA------------- 196
Query: 395 IFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCM 454
F+V+DE H+Y+G FG H A + RRL R+C+ YG P F+ ++AT NP+E
Sbjct: 197 ------FIVVDELHSYRGVFGAHVANVFRRLNRVCA-FYGVQPQFIMASATIGNPQELAE 249
Query: 455 ELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEV 514
L + + + G+P +LWNP V+N D+ +A ++T+
Sbjct: 250 RLIG-APVAAVTESGAPRGAGHLLLWNP-----PVINP---DLGIRASARSQTTR----- 295
Query: 515 SYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRR 574
+ ++ G + I F RSR + E++ Y +++ + + YR GY+ +RR
Sbjct: 296 --VARSAIKAGFKTIVFARSRLMVEVITKYLKDVFDRDP-RRPPRVRAYRGGYLPSERRG 352
Query: 575 IERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAV 634
IERD ++ V +T+ALELG+D+G +DV++ G+PG++A+ WQ+ GR+GRR RPSL V
Sbjct: 353 IERDLRASRVDVVVSTSALELGVDIGSLDVSVLNGYPGTVAATWQRLGRAGRRNRPSLGV 412
Query: 635 YVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFG 694
VA P+DQY +++PE E I +L H+ CAA E P F
Sbjct: 413 LVASSAPIDQYIVRHPEFFLGRSPEQARIHPDQLLILMDHVRCAAFELP---------FQ 463
Query: 695 SGLSSGITTLKNR-GYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQS 753
G S G L GYL L + + +I + P++ +S+R++ + VID+ +
Sbjct: 464 EGESFGSEDLAEMLGYLRDQGLLQYQSGRWYWIA-DSYPANAVSLRSVAEGNFVVIDIDA 522
Query: 754 NE--VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYT 811
+ ++ E++ S A +YEGA+YM Q Y V++L+ + + A +K Y+T DYT
Sbjct: 523 GKQTIIAEVDYSSAPGTIYEGAIYMVQSQPYQVEKLDWTGRKAFVRKTRADYYTDAIDYT 582
Query: 812 DIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKY 871
+ + + + +L + + + + G+ ++ S + LP
Sbjct: 583 RLKI-------LDRFDQQRLDQAASSHGEVHLVRRYPGYKKIRYYSHDNIGYGNINLPDQ 635
Query: 872 SYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPH 930
+ +VW QV P+++ + Q G A+HAL HV + SDL +
Sbjct: 636 EMHTTSVWWQVHPEALAQALPQRERAIEGFLGAAHALHHVAALRAMAEVSDLGRAVGDGQ 695
Query: 931 DSRY--------------------------FPERILLYDRHPGGTGVSK 953
+ + F + LYD PGG G+S+
Sbjct: 696 GTWFAAVGNDGRGQLRGPDNEPVELAPGGRFEPTLFLYDNFPGGVGLSE 744
>gi|419420463|ref|ZP_13960692.1| DEAD/DEAH box helicase [Propionibacterium acnes PRP-38]
gi|379978837|gb|EIA12161.1| DEAD/DEAH box helicase [Propionibacterium acnes PRP-38]
Length = 766
Score = 346 bits (888), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 225/730 (30%), Positives = 366/730 (50%), Gaps = 96/730 (13%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATM 278
Q+V+++ A E P ++ + A+++ GI + + HQA + AG++ + T
Sbjct: 21 QVVYLDHREAAAGRTCEWPSWFPEDCRQAVEAAGIHRPWQHQARFAELARAGRHAAICTA 80
Query: 279 TSSGKSLCYNLPVL-----------EALSHDLSSS---------ALYMFPTKALAQDQLR 318
T+SGK+L Y LP++ E+ + DL +S ALY+ PTKALA DQ R
Sbjct: 81 TASGKTLAYLLPIMAATASATPVVPESPTPDLPASLRDSLHRNSALYLAPTKALAHDQER 140
Query: 319 ALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILS 378
+ + DGD+ + +R + R+ AR ++TNPDMLH ++LP H +++ +L
Sbjct: 141 VCREVGPR---DWLVSTLDGDSDEAERRFAREQARYVLTNPDMLHHTVLPSHARWAGLLG 197
Query: 379 NLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPS 438
+LR +VVIDEAH Y+G FG H A ++RRL RLC ++G+DP
Sbjct: 198 SLR-------------------YVVIDEAHRYRGVFGAHVAQVIRRLRRLC-RMHGADPV 237
Query: 439 FVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMD 498
F+ S+ATS N E L + +E++ D SP + VLW P + +
Sbjct: 238 FLLSSATSTNAAEAGTRLLGVEKVEVVDEDCSPHPGRDVVLWQPAESIST---------- 287
Query: 499 DTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVD 558
+ + L A++ GL+ I F SR L E++ ++ ++ + A
Sbjct: 288 --------------DTTGLVADLADAGLQTICFVASRSLAEVISAHAQDRVTSGA----- 328
Query: 559 SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLW 618
+ YRAGY+ EDRRRIE G + V ATNALELG+D+ +D + G+PG +++LW
Sbjct: 329 RVTAYRAGYLPEDRRRIEARLQDGSVRAVVATNALELGVDISGMDAVVIAGYPGRLSALW 388
Query: 619 QQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCA 678
QQAGR+GR R +L V +A E PLDQY ++PE LF S +E + N VL H+ A
Sbjct: 389 QQAGRAGRSGRDALVVLMARENPLDQYLFEHPELLFSSSVESTVLHPDNPYVLGPHVAAA 448
Query: 679 ALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISI 738
A E LS DE+++GS + TL + L ++F + E+ I +
Sbjct: 449 AQEAYLSPA-DEEFYGSAFAGVCKTLTGQNVLRR-----RGNRLF-WTRPERA-VDAIDL 500
Query: 739 RAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQK 798
R+ + ++ID+ + V+ ++E+ A V+ GAVY+HQG +LV E N AL +
Sbjct: 501 RSAAGKGIDIIDVSTGRVIGGVDEAAADRTVHPGAVYLHQGDQWLVDEYNPVEHHALVHQ 560
Query: 799 ADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQA-LAC---TVTTTWFGFYRLW 854
Y+T+ + +A +I +++ + +AC +T G+ R
Sbjct: 561 DLPGYWTQPQ-----------SASTVRILREERRRACGPGYVACGQVELTEQVVGYLRRD 609
Query: 855 RGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSG-LHAASHALLHVVPI 913
+ ++D+V L +P ++ +QA W +P V ++ N +G H A H + ++P+
Sbjct: 610 EITNDVWDSVPLEMPTHTMITQACWWVIPDKVVDDLKFNAVHLAGAAHGAEHTAIGLLPM 669
Query: 914 YVRCNFSDLA 923
Y C+ D+
Sbjct: 670 YSPCDRWDVG 679
>gi|384154138|ref|YP_005536954.1| DEAD/DEAH box helicase [Amycolatopsis mediterranei S699]
gi|340532292|gb|AEK47497.1| DEAD/DEAH box helicase-like protein [Amycolatopsis mediterranei
S699]
Length = 789
Score = 346 bits (887), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 217/614 (35%), Positives = 319/614 (51%), Gaps = 59/614 (9%)
Query: 274 VVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDI 333
+++T T+SGKSL Y LPVL L+ ++ALY+ PTKAL DQLR++ +S+D+
Sbjct: 1 MISTGTASGKSLAYQLPVLSRLAAGEKANALYLSPTKALGADQLRSV--------SSLDV 52
Query: 334 -GV----YDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLV 388
GV +DGDT +R W+R +A + TNPDMLH IL HG+++
Sbjct: 53 PGVRAASFDGDTPMAERDWVRAHANWVFTNPDMLHRGILSAHGRWA-------------- 98
Query: 389 TTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSAN 448
F + VV+DE H+Y+G FG H AL+LRRL R+ H YG+ P FV ++AT+A+
Sbjct: 99 -----TFFRRLSCVVVDECHSYRGVFGSHVALLLRRLRRVAEH-YGASPVFVLASATTAS 152
Query: 449 PREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTS 508
P L + + + +D SP + LW P L + + N A
Sbjct: 153 PASFASRLTGVPCVA-VTDDASPRGARTVALWEP-PLLEELTGE---------NGAPVRR 201
Query: 509 SPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYV 568
S +E S + A++V G R +AF RSR+ EL R IL E P L +++ YR+GY+
Sbjct: 202 SAGAETSRILADLVLEGARSLAFIRSRRGAELAALGARRILSEVDPALSETVAAYRSGYL 261
Query: 569 AEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRE 628
E+RR +E G+L GVA TNALELG+D+ +D + G+PG++AS WQQAGR+GR
Sbjct: 262 PEERRALESALLAGRLLGVATTNALELGVDIAGLDAVVLAGYPGTLASFWQQAGRAGRSG 321
Query: 629 RPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIY 688
+L V+VA + PLD Y + +P L P+E +D N VL L CAA E PL+L
Sbjct: 322 DSALVVFVARDDPLDTYLVHHPAALLSRPVETAVLDPANPYVLAPQLACAAAELPLTLPE 381
Query: 689 DEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEV 748
E + G+ + L + + S Y P + IR E+ V
Sbjct: 382 LEVFGGAAAQEVLAELAEQKLVRRRSS-------GWYWTSRDRPHAEVGIRGTGGEQIAV 434
Query: 749 IDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTR 808
++ S+ +L ++ A F V+ GAVY+HQG +Y+V EL+L + +AL + + T R
Sbjct: 435 VESDSSRMLGTVDPGSACFAVHPGAVYLHQGSSYVVDELDLETGLALVHAENPDWTTTPR 494
Query: 809 DYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYL 868
+ DI V +T+ +D + VT+ G+ R R SG + D L L
Sbjct: 495 EIVDISV------LSTQEKRD-FGGVSVCLGEVAVTSQVVGYLRR-RPSGEVLDHTPLDL 546
Query: 869 PKYSYESQAVWIQV 882
P+ S ++AVW V
Sbjct: 547 PEQSLRTRAVWYTV 560
>gi|218962137|ref|YP_001741912.1| Putative ATP dependant helicase yprA [Candidatus Cloacamonas
acidaminovorans]
gi|167730794|emb|CAO81706.1| Putative ATP dependant helicase yprA [Candidatus Cloacamonas
acidaminovorans str. Evry]
Length = 863
Score = 345 bits (886), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 228/671 (33%), Positives = 340/671 (50%), Gaps = 97/671 (14%)
Query: 237 PDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALS 296
P+ LL ++ L+ GI K Y HQAE+I A LAGKNVVV+ +SGKSL Y +L +L
Sbjct: 64 PEGLLPPVQNLLQRMGIEKPYIHQAEAIKALLAGKNVVVSAGVASGKSLVYQAVILNSLV 123
Query: 297 HDLSSSALYMFPTKALAQDQLRALLAMTKAFD------ASIDIGVYDGDTTQKDRMWLRD 350
+ S AL +FPTKALAQDQ + + + K + +I G+YDGDT R LR
Sbjct: 124 QNPQSRALLLFPTKALAQDQAQKMQMLCKELNKQNPALPAIVNGIYDGDTATDLRGKLRK 183
Query: 351 NARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAY 410
A +L TNPDMLH+ ILP H +S S L +V+IDE H Y
Sbjct: 184 QANILFTNPDMLHLGILPNHTLWSAFFSRLA-------------------YVIIDEVHIY 224
Query: 411 KGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGS 470
+G FG HTA + RRL R+ + VYG P F+F++AT AN RE L + LI DGS
Sbjct: 225 RGVFGSHTANLFRRLKRITA-VYGIKPQFIFTSATLANARELAETLIEEPVV-LIDKDGS 282
Query: 471 PCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIA 530
P ++ F + NP A S E+S + ++Q L+ +
Sbjct: 283 PKGERHFYICNPPV---------------IEPALGIRRSSTQEISSIAKSLLQTNLQALL 327
Query: 531 FCRSRKLCELVLSYTREILEETAPH-LVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAA 589
F SR+ EL+ Y TA + D + YR+GY+AE+RR++ERD G++ V +
Sbjct: 328 FTGSRRSVELIFRYL------TADQKIADKVRSYRSGYLAEERRKVERDLREGEIGLVIS 381
Query: 590 TNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKY 649
TNALELGID+G +D L G+PG+I + QQAGR+GR+ PSL + A PLDQY ++
Sbjct: 382 TNALELGIDIGGLDAILLNGYPGTICATRQQAGRAGRKGNPSLCILEASGNPLDQYICQH 441
Query: 650 PEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKN-RG 708
PE +F + E +D N ++L L+CA E F G + G + +G
Sbjct: 442 PEYIFANNPEQALLDPNNSEILRLQLLCA---------ISEMAFKEGENFGALSFAEIQG 492
Query: 709 YLSSDPSLDSSAKIFEYIGHE------KMPSHTISIRAIESERYEVIDMQSNEVLEEIEE 762
+L + LD + +IG+ K P+ +S+R ++++ + +E++ ++
Sbjct: 493 HLFA--LLDEG--LIRHIGNRYIGISGKYPAGDVSLRN-AGNQFQI--LADDELVGWVDS 545
Query: 763 SKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDI--------- 813
+ + A+Y+HQG T++VKEL++ K + + + Y+T+ +T+I
Sbjct: 546 GSVKWMTHPNAIYLHQGETWVVKELSIEQKKVILEPVQVNYYTQATQFTEIALNDLWRLE 605
Query: 814 HVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSY 873
+V+GG + TVT T GF RL + + D EL LP
Sbjct: 606 NVTGGRKHFGE----------------VTVTRTITGFKRLRFWTMEVLDQEELDLPPEIM 649
Query: 874 ESQAVWIQVPQ 884
++QA WI + +
Sbjct: 650 QTQAYWISLAE 660
>gi|448479116|ref|ZP_21604040.1| DEAD/DEAH box helicase [Halorubrum arcis JCM 13916]
gi|445822750|gb|EMA72513.1| DEAD/DEAH box helicase [Halorubrum arcis JCM 13916]
Length = 819
Score = 345 bits (885), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 238/798 (29%), Positives = 375/798 (46%), Gaps = 89/798 (11%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
+ +E LR +GQ+ I AR+ ++ L AL GI +LY HQA++I
Sbjct: 3 DAIEWLRDRPFYEGQIADHRRIPAREPEFADV--DLEPRLADALAERGIDRLYRHQADAI 60
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL--LA 322
A G + V+AT T+SGKSL Y +P EA + D LY+ P AL DQ +L LA
Sbjct: 61 EAVRDGDDAVLATETASGKSLAYTVPAFEA-AMDHGGRTLYIGPQNALIADQEESLSELA 119
Query: 323 MTKAFDASIDIGVYDGDTTQKDRMWLRDN-ARLLITNPDMLHMSILPYHGQFSRILSNLR 381
F + + + Y G +Q ++ +RD +L++NPDMLH ++LPY G R
Sbjct: 120 ADLGFGSRVSVDSYTGRLSQSEKRDVRDRRPTVLLSNPDMLHYALLPYAG---------R 170
Query: 382 LIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVF 441
L + F + +VVIDE H+Y+G FG AL LRRL R C +GS P FV
Sbjct: 171 LWDW---------FFSSLEYVVIDEVHSYRGVFGSQVALTLRRLARTCER-FGSAPQFVC 220
Query: 442 STATSANPREHCMELANLST--LELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDD 499
+AT NP +H + + + L+ D S + +VLWNP + D D
Sbjct: 221 CSATINNPVDHVATVTGRDSDGIALVDEDTSGRGPRDWVLWNP----------PEYDDDW 270
Query: 500 TRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LVD 558
+ + S +E LF ++V G + +AF R+R+ E + + L E L
Sbjct: 271 QERGSGRRKSSHTESKRLFVDLVTAGQQTLAFTRARQTAEQYATDSASDLRERGERDLAG 330
Query: 559 SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLW 618
+ Y+A + RR IE D G L GV +T+ALELG+DVG +D + G+PG+ S
Sbjct: 331 KVGAYQAALTDDRRREIEADLHAGDLRGVWSTSALELGVDVGGLDAVVLDGYPGTRMSAH 390
Query: 619 QQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCA 678
Q+AGR+GR + P+L V V E LDQY M+ P F +P E D +N +++ H+ CA
Sbjct: 391 QRAGRAGRGDDPALVVMVGGEDQLDQYLMRNPSDFFDAPPEDAICDPENGQLMPGHVACA 450
Query: 679 ALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISI 738
A E+ LS DE++FG + L + G L+ +++A P ++++
Sbjct: 451 ADENWLS-PEDERFFGDSFPGVVADLTDEGVLN---RREAAAGTRWVHAGGSSPQQSVNL 506
Query: 739 RAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQK 798
R E +I+ S E + + + A + GA+Y QG TY V EL+L +A Q+
Sbjct: 507 RTAEEREISLIERSSGETVATLGFADALRDAHPGAIYHQQGRTYEVVELDLDRDVAELQQ 566
Query: 799 ADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSG 858
+ Y+T+ R DI V+ + A +D + TVT GF R +G
Sbjct: 567 SWADYYTQVRSDKDIVVNEDLDERALSARED----VPVRFADVTVTERITGFVRKDAATG 622
Query: 859 IIFDTVELYLPKYSYESQAVWIQVPQSVK-------AVVEQN------------------ 893
L LP+ + +++++ VP+ ++ VV+ +
Sbjct: 623 ESLGESTLDLPETTLRTKSLYFPVPEDIEREMRRLGDVVDGDGSGDPEVSADGGEPPNGE 682
Query: 894 -----------------FSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFP 936
++F G+HAA H ++ + P ++ C+ +D+ PH
Sbjct: 683 SAVDDTADDGEPIPGGEYAFNGGIHAAEHGIISLFPFHLLCDRADVG-GISTPHHPHTEG 741
Query: 937 ERILLYDRHPGGTGVSKQ 954
+ +YD +PGG G++++
Sbjct: 742 PAVFVYDGYPGGVGLTRR 759
>gi|269955138|ref|YP_003324927.1| DEAD/DEAH box helicase domain-containing protein [Xylanimonas
cellulosilytica DSM 15894]
gi|269303819|gb|ACZ29369.1| DEAD/DEAH box helicase domain protein [Xylanimonas cellulosilytica
DSM 15894]
Length = 868
Score = 344 bits (883), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 251/812 (30%), Positives = 373/812 (45%), Gaps = 90/812 (11%)
Query: 206 MVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIM 265
+++ L G ++ HV + AR + P + +S G+++ + HQA +
Sbjct: 24 LLDVLLAGGARADRLTHVRTLPARDGATADWPSWADPALVAGYQSLGVARPWVHQASAAS 83
Query: 266 ASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLS----SSALYMFPTKALAQDQL---- 317
A+ +G++V +AT T SGKSL + LP L + S LY+ PTKALA DQL
Sbjct: 84 AAWSGRHVALATSTGSGKSLAFWLPALTIIGRTQPPQQRGSVLYLSPTKALAADQLAALE 143
Query: 318 RALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRIL 377
R L AM + + DGDT +R W++D A +++TNPD LH S+LP H ++SR L
Sbjct: 144 RVLAAMPADAGRQLRVTTCDGDTPTDERRWVQDYADVVLTNPDFLHFSLLPNHRRWSRFL 203
Query: 378 SNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDP 437
LR +VV+DE H Y+G FG H +L++RRL RL H G
Sbjct: 204 RALR-------------------YVVVDEGHTYRGVFGAHVSLVMRRLTRLVEHHRGGAL 244
Query: 438 SFVFSTATSANPREHCMELANLST--LELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQT 495
+FV ++ATSA P L +S +E + D SP ++ LW P ++
Sbjct: 245 TFVVASATSAEPAASAARLLGVSPSDVEAVTEDASPSGRRTVALWQPPEIASFAFTRADP 304
Query: 496 DMDD----------TRNAANKTS-------------SPISEVSYLFAEMVQHGLRCIAFC 532
DD A +T+ S +EV+ L A++ HG R +AF
Sbjct: 305 HEDDPWALPDPLDPAHEEAEQTAVVTADGAADHPRRSATAEVADLLADLAAHGARTLAFT 364
Query: 533 RSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNA 592
RSR+ E V R+ L + L I YR GY+ E+RR +E G L G+A TNA
Sbjct: 365 RSRRGAESVAQAARDHLRPVSTDLSRRIAAYRGGYLPEERRELEESIRSGALLGLATTNA 424
Query: 593 LELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEK 652
LELG+D+ +D L G+PG+ SLWQQAGR+GR L +VA E PLD Y + +PE
Sbjct: 425 LELGVDISGLDAVLIAGWPGTRMSLWQQAGRAGRAGADGLVAFVAREDPLDTYLVTHPEA 484
Query: 653 LFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGI-TTLKNRGYLS 711
+F +P+E D N VL L AA E PL ++ L G+ L G L
Sbjct: 485 VFDAPLEATVFDPSNRYVLAPQLCVAAQEVPLRSEELSRFGDPDLVRGVLDELVEGGALR 544
Query: 712 SDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYE 771
PS Y H + + +R V++ + +L ++ A QV++
Sbjct: 545 RRPS-------GWYWTHAQPAAPMADLRGSGGRPVRVVEATTGRLLGTVDAGSADGQVHD 597
Query: 772 GAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQL 831
GAVY+HQG T++V L+L+ ++AL + D+ + T +R+ I + + + +
Sbjct: 598 GAVYVHQGTTFVVDHLDLTDRVALVVRRDVDHGTWSREVMTIAIEEPEPHTSPVVDPVET 657
Query: 832 TKTTAQALACTV-----TTTWFGFYRLWR----GSGI-------------------IFDT 863
T A+ V TTT R W G G + T
Sbjct: 658 TTPAAEPPTAPVVEPVETTTGSTLRRAWGPVSWGLGPVDVTSQVISFERRRVPDLQVLGT 717
Query: 864 VELYLPKYSYESQAVWIQVPQSV-KAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDL 922
L LP+ S + AVW VP V +A LHAA HA + ++P+ C+ DL
Sbjct: 718 EPLDLPERSLATTAVWWSVPDFVLRAAGLSPDVVPGALHAAEHASIGLLPLLATCDRWDL 777
Query: 923 APECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
+ H + +YD +PGG G +++
Sbjct: 778 GGISTDLHPDTGE-ATVFVYDAYPGGAGFAER 808
>gi|448448560|ref|ZP_21591291.1| DEAD/DEAH box helicase [Halorubrum litoreum JCM 13561]
gi|445814576|gb|EMA64537.1| DEAD/DEAH box helicase [Halorubrum litoreum JCM 13561]
Length = 819
Score = 344 bits (883), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 238/798 (29%), Positives = 375/798 (46%), Gaps = 89/798 (11%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
+ +E LR +GQ+ I AR+ ++ L AL GI +LY HQA++I
Sbjct: 3 DAIEWLRDRPFYEGQIADHRRIPAREPEFADV--DLEPRLADALAERGIDRLYRHQADAI 60
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL--LA 322
A G + V+AT T+SGKSL Y +P EA + D LY+ P AL DQ +L LA
Sbjct: 61 EAVRDGDDAVLATETASGKSLAYTVPAFEA-AMDHGGRTLYIGPQNALIADQEESLSGLA 119
Query: 323 MTKAFDASIDIGVYDGDTTQKDRMWLRDN-ARLLITNPDMLHMSILPYHGQFSRILSNLR 381
F + + + Y G +Q ++ +RD +L++NPDMLH ++LPY G R
Sbjct: 120 GDLGFGSRVSVDSYTGRLSQSEKRDVRDRRPTVLLSNPDMLHYALLPYAG---------R 170
Query: 382 LIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVF 441
L + F + +VVIDE H+Y+G FG AL LRRL R C +GS P FV
Sbjct: 171 LWDW---------FFSSLEYVVIDEVHSYRGVFGSQVALTLRRLARTCER-FGSAPQFVC 220
Query: 442 STATSANPREHCMELA--NLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDD 499
+AT NP +H + + + L+ D S + +VLWNP + D D
Sbjct: 221 CSATINNPVDHAATVTGRDPDGIALVDEDTSGRGPRDWVLWNP----------PEYDDDW 270
Query: 500 TRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LVD 558
+ + S +E LF ++V G + +AF R+R+ E + + L E L
Sbjct: 271 QERGSGRRKSSHTESKRLFVDLVTAGQQTLAFTRARQTAEQYATDSASDLRERGERDLAG 330
Query: 559 SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLW 618
+ Y+A + RR IE D G L GV +T+ALELG+DVG +D + G+PG+ S
Sbjct: 331 KVGAYQAALTDDRRREIEADLHAGDLRGVWSTSALELGVDVGGLDAVVLDGYPGTRMSAH 390
Query: 619 QQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCA 678
Q+AGR+GR + P+L V V E LDQY M+ P F +P E D +N +++ H+ CA
Sbjct: 391 QRAGRAGRGDDPALVVMVGGEDQLDQYLMRNPSDFFDAPPEDAICDPENGQLMPGHVACA 450
Query: 679 ALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISI 738
A E+ LS DE++FG + L + G L+ +++A P ++++
Sbjct: 451 ADENWLS-PEDERFFGDSFPGVVADLTDEGVLN---RREAAAGTRWVHAGGSSPQQSVNL 506
Query: 739 RAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQK 798
R E +I+ S E + + + A + GA+Y QG TY V EL+L +A Q+
Sbjct: 507 RTAEEREISLIERSSGETVATLGFADALRDAHPGAIYHQQGRTYEVVELDLDRDVAELQQ 566
Query: 799 ADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSG 858
+ Y+T+ R DI V+ + A +D + TVT GF R +G
Sbjct: 567 SWADYYTQVRSDKDIVVNEDLDERALSARED----VPVRFADVTVTEQITGFVRKDAATG 622
Query: 859 IIFDTVELYLPKYSYESQAVWIQVPQSVK-------AVVEQN------------------ 893
L LP+ + +++++ VP+ ++ VV+ +
Sbjct: 623 ESLGESTLDLPETTLRTKSLYFPVPEDIEREMRRLGDVVDGDGSGDPEVSADGGEPPNGE 682
Query: 894 -----------------FSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFP 936
++F G+HAA H ++ + P ++ C+ +D+ PH
Sbjct: 683 SAVDDTADDGEPIPGGEYAFNGGIHAAEHGIISLFPFHLLCDRADVG-GISTPHHPHTEG 741
Query: 937 ERILLYDRHPGGTGVSKQ 954
+ +YD +PGG G++++
Sbjct: 742 PAVFVYDGYPGGVGLTRR 759
>gi|448529028|ref|ZP_21620343.1| DEAD/DEAH box helicase [Halorubrum hochstenium ATCC 700873]
gi|445709734|gb|ELZ61558.1| DEAD/DEAH box helicase [Halorubrum hochstenium ATCC 700873]
Length = 813
Score = 344 bits (882), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 234/792 (29%), Positives = 372/792 (46%), Gaps = 83/792 (10%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
+ +E LR +GQ+ + AR+ ++ L AL G+ +LY HQA++I
Sbjct: 3 DAIEWLRNRPFYEGQIADHRRLPAREPEFADV--DLEPRLADALADRGVDRLYRHQADAI 60
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL--LA 322
A G +VV+AT T+SGKSL Y +P EA + D + LY+ P AL DQ +L LA
Sbjct: 61 EAVRDGDDVVLATETASGKSLAYTVPAFEA-AMDRGARTLYIGPQNALIADQEESLSDLA 119
Query: 323 MTKAFDASIDIGVYDGDTTQKDRMWLRDN-ARLLITNPDMLHMSILPYHGQFSRILSNLR 381
F + + + Y G ++ ++ +RD +L++NPDMLH ++LPY G R
Sbjct: 120 AGLGFGSRVSVDSYTGRLSRSEKRDVRDRRPTVLLSNPDMLHYALLPYAG---------R 170
Query: 382 LIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVF 441
L + F + +VVIDE H+Y+G FG AL LRRL R C +GS P FV
Sbjct: 171 LWDW---------FFSSLEYVVIDEVHSYRGVFGSQVALTLRRLARTCER-FGSSPQFVC 220
Query: 442 STATSANPREHCMELA--NLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDD 499
+AT NP +H + + + L+ D S + +VLWNP + D D
Sbjct: 221 CSATINNPVDHVATVTGRDPEGIALVDEDTSGRGPRDWVLWNP----------PEYDDDW 270
Query: 500 TRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LVD 558
+ + S +E LF ++V G + +AF R+R+ E + + L E L
Sbjct: 271 QERGSGRRKSSHTESKRLFVDLVTAGQQTLAFTRARQTAEQYATDSASDLRERGERDLAG 330
Query: 559 SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLW 618
+ Y+A + RR IE D G L GV +T+ALELG+DVG +D + G+PG+ S
Sbjct: 331 KVGAYQAALTDDRRREIESDLHAGDLRGVWSTSALELGVDVGGLDAVVLDGYPGTRMSAH 390
Query: 619 QQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCA 678
Q+AGR+GR + P+L V V E LDQY ++ P F +P E D +N +++ H+ CA
Sbjct: 391 QRAGRAGRGDDPALVVMVGGEDQLDQYLIRNPGDFFDAPPEDAICDPENGQLMPGHVACA 450
Query: 679 ALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISI 738
A E+ LS DE++FG + L + G L+ +++A P ++++
Sbjct: 451 ADENWLS-PEDERFFGDSFPGVVADLTDEGVLN---RREAAAGTRWVHAGGSSPQQSVNL 506
Query: 739 RAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQK 798
R E +I+ S E + + + A + GA+Y QG TY V EL+L +A Q+
Sbjct: 507 RTAEEREISLIERSSGETVATLGFADALRDAHPGAIYHQQGRTYEVVELDLDRDVAELQQ 566
Query: 799 ADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSG 858
+ Y+T+ R DI V+ + D + TVT GF R +G
Sbjct: 567 SWADYYTQVRSDKDIVVNDDLDERTLSARPD----VPVRFADVTVTEQITGFVRKDAATG 622
Query: 859 IIFDTVELYLPKYSYESQAVWIQVPQSV-------------------------------- 886
L LP+ + ++A++ VP+ V
Sbjct: 623 ESLGESTLDLPETTLRTKALYFPVPEDVEREMRALGDPLDGDAETPGASGDLASDGGSTG 682
Query: 887 ----KAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLY 942
+ + ++F G+HAA H ++ + P ++ C+ +D+ PH + +Y
Sbjct: 683 DGDGEPIPGGEYAFNGGIHAAEHGIISLFPFHLLCDRADVG-GISTPHHPHTEGPAVFVY 741
Query: 943 DRHPGGTGVSKQ 954
D +PGG G++++
Sbjct: 742 DGYPGGVGLTRR 753
>gi|448424166|ref|ZP_21582292.1| DEAD/DEAH box helicase [Halorubrum terrestre JCM 10247]
gi|445682831|gb|ELZ35244.1| DEAD/DEAH box helicase [Halorubrum terrestre JCM 10247]
Length = 819
Score = 344 bits (882), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 237/798 (29%), Positives = 375/798 (46%), Gaps = 89/798 (11%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
+ +E LR +GQ+ + AR+ ++ L AL GI +LY HQA++I
Sbjct: 3 DAIEWLRDRPFYEGQIADHRRLPAREPEFADV--DLEPRLADALAERGIDRLYRHQADAI 60
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL--LA 322
A G + V+AT T+SGKSL Y +P EA + D LY+ P AL DQ +L LA
Sbjct: 61 EAVRDGDDAVLATETASGKSLAYTVPAFEA-AMDHGGRTLYIGPQNALIADQEESLSELA 119
Query: 323 MTKAFDASIDIGVYDGDTTQKDRMWLRDN-ARLLITNPDMLHMSILPYHGQFSRILSNLR 381
F + + + Y G +Q ++ +RD +L++NPDMLH ++LPY G R
Sbjct: 120 ADLGFGSRVSVDSYTGRLSQSEKRDVRDRRPTVLLSNPDMLHYALLPYAG---------R 170
Query: 382 LIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVF 441
L + F + +VVIDE H+Y+G FG AL LRRL R C +GS P FV
Sbjct: 171 LWDW---------FFSSLEYVVIDEVHSYRGVFGSQVALTLRRLARTCER-FGSAPQFVC 220
Query: 442 STATSANPREHCMELA--NLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDD 499
+AT NP +H + + + L+ D S + +VLWNP + D D
Sbjct: 221 CSATINNPVDHVATVTGRDPDGIALVDEDTSGRGPRDWVLWNP----------PEYDDDW 270
Query: 500 TRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LVD 558
+ + S +E LF ++V G + +AF R+R+ E + + L E L
Sbjct: 271 QERGSGRRKSSHTESKRLFVDLVTAGQQTLAFTRARQTAEQYATDSASDLRERGERDLAG 330
Query: 559 SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLW 618
+ Y+A + RR IE D G L GV +T+ALELG+DVG +D + G+PG+ S
Sbjct: 331 KVGAYQAALTDDRRREIEADLHAGDLRGVWSTSALELGVDVGGLDAVVLDGYPGTRMSAH 390
Query: 619 QQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCA 678
Q+AGR+GR + P+L V V E LDQY M+ P F +P E D +N +++ H+ CA
Sbjct: 391 QRAGRAGRGDDPALVVMVGGEDQLDQYLMRNPSDFFDAPPEDAICDPENGQLMPGHVACA 450
Query: 679 ALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISI 738
A E+ LS DE++FG + L + G L+ +++A P ++++
Sbjct: 451 ADENWLS-PEDERFFGDSFPGVVADLTDEGVLN---RREAAAGTRWVHAGGSSPQQSVNL 506
Query: 739 RAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQK 798
R E +I+ S E + + + A + GA+Y QG TY V EL+L +A Q+
Sbjct: 507 RTAEEREISLIERSSGETVATLGFADALRDAHPGAIYHQQGRTYEVVELDLDRDVAELQQ 566
Query: 799 ADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSG 858
+ Y+T+ R DI V+ + A +D + TVT GF R +G
Sbjct: 567 SWADYYTQVRSDKDIVVNEDLDERALSARED----VPVRFADVTVTEQITGFVRKDAATG 622
Query: 859 IIFDTVELYLPKYSYESQAVWIQVPQSVK-------AVVEQN------------------ 893
L LP+ + +++++ VP+ ++ VV+ +
Sbjct: 623 ESLGESTLDLPETTLRTKSLYFPVPEDIEREMRRLGDVVDGDGSGDPEVSADGGEPPNGE 682
Query: 894 -----------------FSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFP 936
++F G+HAA H ++ + P ++ C+ +D+ PH
Sbjct: 683 SAVDDTADDGEPIPGGEYAFNGGIHAAEHGIISLFPFHLLCDRADVG-GISTPHHPHTEG 741
Query: 937 ERILLYDRHPGGTGVSKQ 954
+ +YD +PGG G++++
Sbjct: 742 PAVFVYDGYPGGVGLTRR 759
>gi|398306847|ref|ZP_10510433.1| ATP-dependent helicase [Bacillus vallismortis DV1-F-3]
Length = 458
Score = 343 bits (881), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 190/495 (38%), Positives = 289/495 (58%), Gaps = 45/495 (9%)
Query: 198 KSQLLPLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLY 257
K + LP E++ L+ G++ +V+ +I R+A +P+++ + K+AL GI KLY
Sbjct: 2 KKKSLP-ELISELK---GNE-NVVNWHEIEPREAKTRPMPESIDERIKAALSKRGIEKLY 56
Query: 258 SHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQL 317
+HQ + G+++V T T+SGK+LCYNLPVL++++ D ++ ALY+FPTKALAQDQ
Sbjct: 57 THQYSAFQYVQEGESIVTVTPTASGKTLCYNLPVLQSIAQDETNRALYLFPTKALAQDQK 116
Query: 318 RALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRIL 377
L + I YDGDT+ R +R ++ITNPDMLH +ILP+H ++ +
Sbjct: 117 SELNEIIDEMGIDIKSFTYDGDTSPAIRQKVRKAGHIVITNPDMLHSAILPHHTKWVSLF 176
Query: 378 SNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDP 437
NL +++VIDE H Y+G FG H A ++RRL R+C YGSDP
Sbjct: 177 ENL-------------------KYIVIDELHTYRGVFGSHVANVIRRLKRIC-RFYGSDP 216
Query: 438 SFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDM 497
F+ ++AT ANP+E +L + L+ ++G+P +K FV +NP ++NK
Sbjct: 217 VFICTSATIANPKELGEQLTG-KPMRLVDDNGAPSGRKHFVFYNP-----PLVNK----- 265
Query: 498 DDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLV 557
N S +EV+ L E +++ ++ I F RSR E++LS+ +E++++
Sbjct: 266 -----PLNIRKSATAEVNELAKEFLKNKVQTIVFARSRVRVEIILSHIQELVKKEIG--T 318
Query: 558 DSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASL 617
SI YR GY+ ++RR IER G++ GV +TNALELG+D+G + V + G+PGS+AS
Sbjct: 319 KSIRGYRGGYLPKERREIERGLREGEILGVISTNALELGVDIGQLQVCVMTGYPGSVASA 378
Query: 618 WQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVC 677
WQQAGR+GRR SL + VA P+DQY +++PE F E I+ +N +L HL C
Sbjct: 379 WQQAGRAGRRHGESLIIMVANSTPIDQYIVRHPEYFFNRSPESARINPENLIILVDHLKC 438
Query: 678 AAL--EHPLSLIYDE 690
A + E L +I DE
Sbjct: 439 ADVVNEFKLDIIQDE 453
>gi|285019874|ref|YP_003377585.1| helicase [Xanthomonas albilineans GPE PC73]
gi|283475092|emb|CBA17591.1| putative helicase protein [Xanthomonas albilineans GPE PC73]
Length = 829
Score = 343 bits (881), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 231/750 (30%), Positives = 376/750 (50%), Gaps = 89/750 (11%)
Query: 236 IPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL 295
IPDA+ +AL++ GI +LYSHQAE+ A+ G +V + T T+SGKSLCY LPV+ A
Sbjct: 58 IPDAVPPALAAALRARGIQQLYSHQAEAWEAAQRGAHVAIVTPTASGKSLCYTLPVVAAA 117
Query: 296 SHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLL 355
+ ALY+FPTKALAQDQ+ LL + + + +DGDT R +R + ++
Sbjct: 118 MT-AQAKALYLFPTKALAQDQVAELLDLNRVGTLGVKAFTFDGDTPGDARQAIRLHGDIV 176
Query: 356 ITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFG 415
++NPDMLH +ILP+H ++++ NLR +VVIDE H+Y+G FG
Sbjct: 177 VSNPDMLHQAILPHHTKWAQFFENLR-------------------YVVIDEIHSYRGVFG 217
Query: 416 CHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQK 475
H A +LRRL R+C+ YG+ P F+ +AT NPR H L + I + G+P K
Sbjct: 218 SHVANVLRRLKRICA-FYGTRPQFILCSATIGNPRAHAEALIE-QRVHAITDSGAPTGDK 275
Query: 476 LFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSR 535
+LWNP V+N D+ R +A S+ I+ ++ ++ GL+ + F +SR
Sbjct: 276 HVLLWNP-----PVVNP---DLG-LRASARSQSNRIARIA------IKSGLKTLVFAQSR 320
Query: 536 KLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALEL 595
+ E++ Y ++I + P I YR GY+ +RR ER G + G+ +T+ALEL
Sbjct: 321 LMVEVLTKYLKDIFDHD-PRKPPRIRAYRGGYLPSERREAERAMRAGSIDGIVSTSALEL 379
Query: 596 GIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFK 655
G+D+G +DV + G+PGS+A+ WQ+ GR+GRR++ +L V VA PLDQY +++P+
Sbjct: 380 GVDIGALDVVVLNGYPGSVAATWQRFGRAGRRQQAALGVLVASSQPLDQYVVRHPDFFAD 439
Query: 656 SPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPS 715
+ E I +L H+ CAA E L+ + E + S + L+ +
Sbjct: 440 ASPEHARIAPNQPLILFDHIRCAAFE--LTFVAGEAFGPVDPSVFLEA------LAENDV 491
Query: 716 LDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN--EVLEEIEESKAFFQVYEGA 773
+ + +E+I + P++ +S+R++ + V+D +++ E++ S A +YEGA
Sbjct: 492 VHREGERWEWIA-DSYPANAVSLRSVADGNFVVVDRTDGKQQIIAEVDYSAAALTLYEGA 550
Query: 774 VYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTK 833
++M Q Y V++L+ + A + + Y+T + D+T ++V + +
Sbjct: 551 IHMVQSTPYQVEKLDWEGRKAYVTRTHVDYYTDSIDFTKLNV-------LDRFDSTAAGR 603
Query: 834 TTAQALACTVTTTWFGF--YRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSV--KAV 889
A V G+ R + I + V LP + A+W QVPQ++ A
Sbjct: 604 GDAHHGEVHVVRRVAGYKKIRYYTHENIGYGPVN--LPDQELHTTAMWWQVPQAILLNAF 661
Query: 890 VEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPEC----------------------- 926
+ + G A++AL V + V + DL
Sbjct: 662 ASKQDAL-DGFLGAAYALHVVATVAVMADARDLQKAVGDGNGAWFAVADGKGRGQVRSGD 720
Query: 927 ---PNPHDSRYFPERILLYDRHPGGTGVSK 953
P+ + + F + LYD PGG G+S+
Sbjct: 721 NGDPSNIELQQFVPTVYLYDNAPGGVGLSE 750
>gi|448506270|ref|ZP_21614380.1| DEAD/DEAH box helicase [Halorubrum distributum JCM 9100]
gi|448525110|ref|ZP_21619528.1| DEAD/DEAH box helicase [Halorubrum distributum JCM 10118]
gi|445699920|gb|ELZ51938.1| DEAD/DEAH box helicase [Halorubrum distributum JCM 9100]
gi|445700082|gb|ELZ52097.1| DEAD/DEAH box helicase [Halorubrum distributum JCM 10118]
Length = 819
Score = 343 bits (881), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 239/798 (29%), Positives = 374/798 (46%), Gaps = 89/798 (11%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
+ +E LR +GQ+ I AR+ ++ L AL GI +LY HQA++I
Sbjct: 3 DAIEWLRDRPFYEGQIADHRRIPAREPEFADV--DLEPRLADALAERGIDRLYRHQADAI 60
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL--LA 322
A G + V+AT T+SGKSL Y +P EA + D LY+ P AL DQ +L LA
Sbjct: 61 EAVRDGDDAVLATETASGKSLAYTVPAFEA-AMDHGGRTLYIGPQNALIADQEESLSGLA 119
Query: 323 MTKAFDASIDIGVYDGDTTQKDRMWLRDN-ARLLITNPDMLHMSILPYHGQFSRILSNLR 381
F + + + Y G +Q ++ +RD +L++NPDMLH ++LPY G R
Sbjct: 120 GDLGFGSRVSVDSYTGRLSQSEKRDVRDRRPTVLLSNPDMLHYALLPYAG---------R 170
Query: 382 LIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVF 441
L + F + +VVIDE H+Y+G FG AL LRRL R C +GS P FV
Sbjct: 171 LWDW---------FFSSLEYVVIDEVHSYRGVFGSQVALTLRRLARTCER-FGSAPQFVC 220
Query: 442 STATSANPREHCMELA--NLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDD 499
+AT NP +H + + + L+ D S + +VLWNP + D D
Sbjct: 221 CSATINNPVDHVATVTGRDPDGIALVDEDTSGRGPRDWVLWNP----------PEYDDDW 270
Query: 500 TRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LVD 558
+ + S +E LF ++V G + +AF R+R+ E + + L E L
Sbjct: 271 QERGSGRRKSSHTESKRLFVDLVTAGQQTLAFTRARQTAEQYATDSASDLRERGERDLAG 330
Query: 559 SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLW 618
+ Y+A + RR IE D G L GV +T+ALELG+DVG +D + G+PG+ S
Sbjct: 331 KVGAYQAALTDDRRREIEADLHAGDLRGVWSTSALELGVDVGGLDAVVLDGYPGTRMSAH 390
Query: 619 QQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCA 678
Q+AGR+GR E P+L V V E LDQY M+ P F +P E D +N +++ H+ CA
Sbjct: 391 QRAGRAGRGEDPALVVMVGGEDQLDQYLMRNPSDFFDAPPEDAICDPENGQLMPGHVACA 450
Query: 679 ALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISI 738
A E+ LS DE++FG + L + G L+ +++A P ++++
Sbjct: 451 ADENWLS-PEDERFFGDSFPGVVADLTDEGVLN---RREAAAGTRWVHAGGSSPQQSVNL 506
Query: 739 RAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQK 798
R E +I+ S E + + + A + GA+Y QG TY V EL+L +A Q+
Sbjct: 507 RTAEEREISLIERSSGETVATLGFADALRDAHPGAIYHQQGRTYEVVELDLDRDVAELQQ 566
Query: 799 ADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSG 858
+ Y+T+ R DI V+ + A +D + TVT GF R +G
Sbjct: 567 SWADYYTQVRSDKDIVVNEDLDERALSAREDVPIRFA----DVTVTERITGFVRKDAATG 622
Query: 859 IIFDTVELYLPKYSYESQAVWIQVPQSVK-------AVVEQN------------------ 893
L LP+ + +++++ VP ++ VV+ +
Sbjct: 623 ESLGESTLDLPETTLRTKSLYFPVPGDIEREMRRLGDVVDGDGSGDPEVSADGGEPPNGE 682
Query: 894 -----------------FSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFP 936
++F G+HAA H ++ + P ++ C+ +D+ PH
Sbjct: 683 SAVDDTADDGEPIPGGEYAFNGGIHAAEHGIISLFPFHLLCDRADVG-GISTPHHPHTEG 741
Query: 937 ERILLYDRHPGGTGVSKQ 954
+ +YD +PGG G++++
Sbjct: 742 PAVFVYDGYPGGVGLTRR 759
>gi|374587194|ref|ZP_09660286.1| DEAD/DEAH box helicase domain protein [Leptonema illini DSM 21528]
gi|373876055|gb|EHQ08049.1| DEAD/DEAH box helicase domain protein [Leptonema illini DSM 21528]
Length = 757
Score = 343 bits (881), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 231/765 (30%), Positives = 379/765 (49%), Gaps = 94/765 (12%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
++++ L+K + + +I AR+ +EIP+ L K L++ GI +LY HQAE+
Sbjct: 5 QLIDFLQKNERFAANISSLHEIPAREERSIEIPEDLPAALKGMLQAQGIKRLYIHQAETY 64
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
G++VVV T T+SGKSL Y LPVL + + + +FPTKAL++DQ A+ +
Sbjct: 65 RRMREGRDVVVVTPTASGKSLSYLLPVLHRKLENPEARTILLFPTKALSRDQQAAIENFS 124
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
+A + YDGDT+ R +R++ +ITNPDMLH ILP+H + R+ NL I
Sbjct: 125 EAAKMELRTFTYDGDTSASARNRIRESGDFVITNPDMLHAGILPHHTMWIRLFENLETI- 183
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
V+DE H Y+G FG H A ++RRL R+ + YG P + ++A
Sbjct: 184 ------------------VVDEMHTYRGVFGSHFANVMRRLLRIAA-FYGKSPRIICASA 224
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T NP E +L +++ +G+P +K+F+ +NP + +
Sbjct: 225 TIGNPGELAEKLFE-RPFDVVDENGAPSGRKVFLFYNPPVVQKEL--------------- 268
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYR 564
S + E + L V + + I FCRSR E++ +Y +E ++ A + + YR
Sbjct: 269 GIRVSSVKEAAKLGGLFVDNNVHSILFCRSRTRVEVLTNYLKEASKQKA----NRVMAYR 324
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
GY+ +RR IERD GKL V +TNALELGID+G +DV++ +GFPGSI+SL QQ+GR+
Sbjct: 325 GGYLPNERRSIERDLREGKLLAVVSTNALELGIDIGSLDVSITVGFPGSISSLLQQSGRA 384
Query: 625 GRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
GR++ ++++ +A DQY +++PE L E I+A N +L +HL CA E P
Sbjct: 385 GRKQNDAISILIATSEATDQYVVQHPEFLLGRSPEHGRINADNLLILIEHLKCAVFELPF 444
Query: 685 SLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESE 744
+K G + +T L + L+ + S + + + P++ IS+RA E
Sbjct: 445 -----KKGESFGRFAEVTELLD--LLAQGRIVTRSGDDWHW-SDDSYPANNISLRAGPRE 496
Query: 745 RYEVIDMQSN---EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADL 801
+ ++D+ +++ EI+ A ++ A+Y+HQ Y V+EL +IA +K ++
Sbjct: 497 NFVIVDISDTGREKIIGEIDRFAAPTMIHPHAIYLHQSEPYYVEELLWEDRIAKIRKVEV 556
Query: 802 KYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGS---- 857
Y+T ++ D+ + + A +C + G +L R +
Sbjct: 557 DYYTDAQEKVDVSI-----------------LESEVAGSCETFDLYKGELQLQRRAVMFK 599
Query: 858 GIIFDTVE------LYLPKYSYESQAVWI------QVPQSVKAVVEQNFSFRSGLHAASH 905
I F+T E ++LP+ +Q W+ Q+P ++ + + L +H
Sbjct: 600 KIKFETHENLGWGDIHLPELEMHTQGFWMLFRDLDQLPG-----LDSDARIGATLAGVAH 654
Query: 906 ALLHVVPIYVRCNFSDLA--PECPNPHDSRYFPERILLYDRHPGG 948
AL V PI+ C+ D+ E NP + I D PGG
Sbjct: 655 ALGVVAPIHAMCDPRDMRFHAEVRNP---VFALPCIYAVDNFPGG 696
>gi|282853293|ref|ZP_06262630.1| putative DEAH-box helicase [Propionibacterium acnes J139]
gi|282582746|gb|EFB88126.1| putative DEAH-box helicase [Propionibacterium acnes J139]
Length = 766
Score = 342 bits (878), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 220/729 (30%), Positives = 362/729 (49%), Gaps = 94/729 (12%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATM 278
Q+V+++ A E P ++ + A+++ GI + + HQA + AG++ + T
Sbjct: 21 QVVYLDHREAAAGRTCEWPSWFPEDCRQAVEAAGIHRPWQHQARFAELARAGRHAAICTA 80
Query: 279 TSSGKSLCYNLPVLEALSHDLS--------------------SSALYMFPTKALAQDQLR 318
T+SGK+L Y LP++ A + +SALY+ PTKAL DQ R
Sbjct: 81 TASGKTLAYLLPIMAATASTTPVMPESPTPGLPASLRDSLHRNSALYLAPTKALTHDQER 140
Query: 319 ALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILS 378
+ + + DGD+ + +R + R+ AR ++TNPDMLH ++LP H +++ +L
Sbjct: 141 VC---HEVGPRNWLVSTLDGDSDEAERRFAREQARYVLTNPDMLHHTVLPSHARWAGLLG 197
Query: 379 NLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPS 438
+LR +VVIDEAH Y+G FG H A ++RRL RLC ++G+DP
Sbjct: 198 SLR-------------------YVVIDEAHQYRGVFGAHVAQVIRRLRRLC-RMHGADPV 237
Query: 439 FVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMD 498
F+ S+ATS N E L + +E++ D SP + VLW P + +
Sbjct: 238 FLLSSATSTNAAEAGTRLLGVEKVEVVDEDYSPHPGRDVVLWQPAESISA---------- 287
Query: 499 DTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVD 558
+ + L A++ GL+ I F SR L E++ ++ ++ + A
Sbjct: 288 --------------DATGLVADLTDAGLQTICFVASRSLAEVISAHAQDRVTSGA----- 328
Query: 559 SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLW 618
+ YRAGY+ EDRRRIE G + V ATNALELG+D+ ID + G+PG +++LW
Sbjct: 329 RVTAYRAGYLPEDRRRIEAKLQDGSMRAVVATNALELGVDISGIDAVVIAGYPGRLSALW 388
Query: 619 QQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCA 678
QQAGR+GR R +L V +A E PLDQY ++PE LF S +E + N VL H+ A
Sbjct: 389 QQAGRAGRSGRDALVVLMARENPLDQYLFEHPELLFSSSVESTVLHPDNPYVLGPHVAAA 448
Query: 679 ALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISI 738
A E LS DE+++GS + TL + L ++F + E+ I +
Sbjct: 449 AQEAYLSPA-DEEFYGSAFAGICKTLTGQNVLRR-----RGNRLF-WTRPERA-VDAIDL 500
Query: 739 RAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQK 798
R+ + ++ID+ + V+ ++E+ A V+ GAVY+HQG +LV E N AL +
Sbjct: 501 RSAAGKGIDIIDVSTGRVIGVVDEAAADRTVHPGAVYLHQGDQWLVDEYNPVEHHALVHQ 560
Query: 799 ADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALAC---TVTTTWFGFYRLWR 855
Y+T+ + + + + + +++ +AC +T G+ R
Sbjct: 561 DLPGYWTQPQSASTVRI----------LREERRRDCGPGYVACGQVELTEQVVGYLRRDE 610
Query: 856 GSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSG-LHAASHALLHVVPIY 914
+ ++D+V L +P ++ +QA W +P V ++ + +G H A H + ++P+Y
Sbjct: 611 ITNDVWDSVALEMPTHTMITQACWWVIPDKVVDDLKLDAVHLAGAAHGAEHTAIGLLPMY 670
Query: 915 VRCNFSDLA 923
C+ D+
Sbjct: 671 SPCDRWDVG 679
>gi|295129807|ref|YP_003580470.1| putative DEAH-box helicase [Propionibacterium acnes SK137]
gi|417931250|ref|ZP_12574623.1| DEAH-box helicase [Propionibacterium acnes SK182]
gi|291376958|gb|ADE00813.1| putative DEAH-box helicase [Propionibacterium acnes SK137]
gi|340769573|gb|EGR92097.1| DEAH-box helicase [Propionibacterium acnes SK182]
Length = 766
Score = 342 bits (877), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 222/730 (30%), Positives = 363/730 (49%), Gaps = 96/730 (13%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATM 278
Q+V+++ A E P ++ + A+++ GI + + HQA + AG++ + T
Sbjct: 21 QVVYLDHREAAAGHTCEWPSWFPEDCRQAVEAAGIHRPWQHQARFAELARAGRHAAICTA 80
Query: 279 TSSGKSLCYNLPVLEALSHDLS--------------------SSALYMFPTKALAQDQLR 318
T+SGK+L Y LP++ A + +SALY+ PTKALA DQ R
Sbjct: 81 TASGKTLAYLLPIMAATASATPVVPESPTPGLPASLRDSLHRNSALYLAPTKALAHDQER 140
Query: 319 ALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILS 378
+ + DGD+ + +R + R+ AR ++TNPDMLH ++LP H +++ +L
Sbjct: 141 VCREVGPR---DWLVSTLDGDSDEAERRFAREQARYVLTNPDMLHHTVLPSHARWAGLLG 197
Query: 379 NLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPS 438
+LR +VVIDEAH Y+G FG H A ++RRL RLC ++G+DP
Sbjct: 198 SLR-------------------YVVIDEAHRYRGVFGAHVAQVIRRLRRLC-RMHGADPV 237
Query: 439 FVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMD 498
F+ S+ATS N E L + +E++ D SP + VLW P + +
Sbjct: 238 FLLSSATSTNAAEAGTRLLGVEKVEVVDEDCSPHPGRDVVLWQPAESIST---------- 287
Query: 499 DTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVD 558
+ + L A++ GL+ I F SR L E++ ++ ++ + A
Sbjct: 288 --------------DATGLVADLADAGLQTICFVASRSLAEVISAHAQDRVTSGA----- 328
Query: 559 SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLW 618
+ YRAGY+ EDRRRIE G + V ATNALELG+D+ +D + G+PG +++LW
Sbjct: 329 RVTAYRAGYLPEDRRRIEARLQDGSVRAVVATNALELGVDISGMDAVVIAGYPGRLSALW 388
Query: 619 QQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCA 678
QQAGR+GR R +L V +A E PLDQY ++PE LF S +E + N VL H+ A
Sbjct: 389 QQAGRAGRSGRDALVVLMARENPLDQYLFEHPELLFSSSVESTVLHPDNPYVLGPHVAAA 448
Query: 679 ALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISI 738
A E LS DE+++GS + TL + L ++F + E+ I +
Sbjct: 449 AQEAYLSPA-DEEFYGSAFAGICKTLTGQNVLRR-----RGNRLF-WTRPERA-VDAIDL 500
Query: 739 RAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQK 798
R+ + ++ID+ + V+ ++E+ A V+ GAVY+HQG +LV E N AL +
Sbjct: 501 RSAAGKGIDIIDVSTGRVIGGVDEAAADRTVHPGAVYLHQGDQWLVDEYNPVEHHALVHQ 560
Query: 799 ADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQA-LAC---TVTTTWFGFYRLW 854
Y+T+ + +A +I +++ + +AC +T G+ R
Sbjct: 561 DLPGYWTQPQ-----------SASTVRILREERRRACGPGYVACGQVELTEQVVGYLRRD 609
Query: 855 RGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSG-LHAASHALLHVVPI 913
+ ++D+V L +P ++ +QA W +P V ++ + +G H A H + ++P+
Sbjct: 610 EITNDVWDSVALEMPTHTMITQACWWVIPDKVVDDLKFDAVHLAGAAHGAEHTAIGLLPM 669
Query: 914 YVRCNFSDLA 923
Y C+ D+
Sbjct: 670 YSPCDRWDVG 679
>gi|289424632|ref|ZP_06426415.1| putative DEAH-box helicase [Propionibacterium acnes SK187]
gi|342212538|ref|ZP_08705263.1| DEAH-box helicase [Propionibacterium sp. CC003-HC2]
gi|365961963|ref|YP_004943529.1| DEAD/DEAH box helicase [Propionibacterium acnes TypeIA2 P.acn31]
gi|365964205|ref|YP_004945770.1| DEAD/DEAH box helicase [Propionibacterium acnes TypeIA2 P.acn17]
gi|365973144|ref|YP_004954703.1| DEAD/DEAH box helicase [Propionibacterium acnes TypeIA2 P.acn33]
gi|387502611|ref|YP_005943840.1| DEAD/DEAH box helicase [Propionibacterium acnes 6609]
gi|289155329|gb|EFD04011.1| putative DEAH-box helicase [Propionibacterium acnes SK187]
gi|335276656|gb|AEH28561.1| putative DEAH-box helicase [Propionibacterium acnes 6609]
gi|340768082|gb|EGR90607.1| DEAH-box helicase [Propionibacterium sp. CC003-HC2]
gi|365738644|gb|AEW82846.1| putative DEAH-box helicase [Propionibacterium acnes TypeIA2
P.acn31]
gi|365740886|gb|AEW80580.1| putative DEAH-box helicase [Propionibacterium acnes TypeIA2
P.acn17]
gi|365743143|gb|AEW78340.1| putative DEAH-box helicase [Propionibacterium acnes TypeIA2
P.acn33]
gi|456740373|gb|EMF64894.1| DEAD/DEAH box helicase [Propionibacterium acnes FZ1/2/0]
Length = 766
Score = 342 bits (876), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 222/730 (30%), Positives = 363/730 (49%), Gaps = 96/730 (13%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATM 278
Q+V+++ A E P ++ + A+++ GI + + HQA + AG++ + T
Sbjct: 21 QVVYLDHREAAAGHTCEWPSWFPEDCRQAVEAAGIHRPWQHQARFAELARAGRHAAICTA 80
Query: 279 TSSGKSLCYNLPVLEALSHDLS--------------------SSALYMFPTKALAQDQLR 318
T+SGK+L Y LP++ A + +SALY+ PTKALA DQ R
Sbjct: 81 TASGKTLAYLLPIMAATASATPVVPESPTPGLPASLRDSLHRNSALYLAPTKALAHDQER 140
Query: 319 ALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILS 378
+ + DGD+ + +R + R+ AR ++TNPDMLH ++LP H +++ +L
Sbjct: 141 VCREVGPR---DWLVSTLDGDSDEAERRFAREQARYVLTNPDMLHHTVLPSHARWAGLLG 197
Query: 379 NLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPS 438
+LR +VVIDEAH Y+G FG H A ++RRL RLC ++G+DP
Sbjct: 198 SLR-------------------YVVIDEAHRYRGVFGAHVAQVIRRLRRLC-RMHGADPV 237
Query: 439 FVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMD 498
F+ S+ATS N E L + +E++ D SP + VLW P + +
Sbjct: 238 FLLSSATSTNAAEAGTRLLGVEKVEVVDEDCSPHPGRDVVLWQPAESIST---------- 287
Query: 499 DTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVD 558
+ + L A++ GL+ I F SR L E++ ++ ++ + A
Sbjct: 288 --------------DATGLVADLADAGLQTICFVASRSLAEVISAHAQDRVTSGA----- 328
Query: 559 SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLW 618
+ YRAGY+ EDRRRIE G + V ATNALELG+D+ +D + G+PG +++LW
Sbjct: 329 RVTAYRAGYLPEDRRRIEARLQDGSVRAVVATNALELGVDISGMDAVVIAGYPGRLSALW 388
Query: 619 QQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCA 678
QQAGR+GR R +L V +A E PLDQY ++PE LF S +E + N VL H+ A
Sbjct: 389 QQAGRAGRSGRDALVVLMARENPLDQYLFEHPELLFSSSVESTVLHPDNPYVLGPHVAAA 448
Query: 679 ALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISI 738
A E LS DE+++GS + TL + L ++F + E+ I +
Sbjct: 449 AQEAYLSPA-DEEFYGSAFAGICKTLTGQNVLRR-----RGNRLF-WTRPERA-VDAIDL 500
Query: 739 RAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQK 798
R+ + ++ID+ + V+ ++E+ A V+ GAVY+HQG +LV E N AL +
Sbjct: 501 RSAAGKGIDIIDVSTGRVIGGVDEAAADRTVHPGAVYLHQGDQWLVDEYNPVEHHALVHQ 560
Query: 799 ADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQA-LAC---TVTTTWFGFYRLW 854
Y+T+ + +A +I +++ + +AC +T G+ R
Sbjct: 561 DLPGYWTQPQ-----------SASTVRILREERRRACGPGYVACGQVELTEQVVGYLRRD 609
Query: 855 RGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSG-LHAASHALLHVVPI 913
+ ++D+V L +P ++ +QA W +P V ++ + +G H A H + ++P+
Sbjct: 610 EITNDVWDSVALEMPTHTMITQACWWVIPDKVVDDLKFDAVHLAGAAHGAEHTAIGLLPM 669
Query: 914 YVRCNFSDLA 923
Y C+ D+
Sbjct: 670 YSPCDRWDVG 679
>gi|386070781|ref|YP_005985677.1| DEAD/DEAH box helicase [Propionibacterium acnes ATCC 11828]
gi|353455147|gb|AER05666.1| putative DEAH-box helicase [Propionibacterium acnes ATCC 11828]
Length = 766
Score = 341 bits (875), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 219/729 (30%), Positives = 362/729 (49%), Gaps = 94/729 (12%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATM 278
Q+V+++ A E P ++ + A+++ GI + + HQA + AG++ + T
Sbjct: 21 QVVYLDHREAAAGRTCEWPSWFPEDCRQAVEAAGIHRPWQHQARFAELARAGRHAAICTA 80
Query: 279 TSSGKSLCYNLPVLEALSHDLS--------------------SSALYMFPTKALAQDQLR 318
T+SGK+L Y LP++ A + +SALY+ PTKAL DQ R
Sbjct: 81 TASGKTLAYLLPIMAATASTTPVMPESPTPGLPASLRDSLHRNSALYLAPTKALTHDQER 140
Query: 319 ALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILS 378
+ + + DGD+ + +R + R+ AR ++TNPDMLH ++LP H +++ +L
Sbjct: 141 VC---HEVGPRNWLVSTLDGDSDEAERRFAREQARYVLTNPDMLHHTVLPSHARWAGLLG 197
Query: 379 NLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPS 438
+LR +VVIDEAH Y+G FG H A ++RRL RLC ++G+DP
Sbjct: 198 SLR-------------------YVVIDEAHQYRGVFGAHVAQVIRRLRRLC-RMHGADPV 237
Query: 439 FVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMD 498
F+ S+ATS N E L + +E++ D SP + VLW P + +
Sbjct: 238 FLLSSATSTNAAEAGTRLLGVEKVEVVDEDYSPHPGRDVVLWQPAESISA---------- 287
Query: 499 DTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVD 558
+ + L A++ GL+ I F SR L E++ ++ ++ + A
Sbjct: 288 --------------DATGLVADLTDAGLQTICFVASRSLAEVISAHAQDRVTSGA----- 328
Query: 559 SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLW 618
+ YRAGY+ EDRRRIE G + V ATNALELG+D+ +D + G+PG +++LW
Sbjct: 329 RVTAYRAGYLPEDRRRIEAKLQDGSMRAVVATNALELGVDISGMDAVVIAGYPGRLSALW 388
Query: 619 QQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCA 678
QQAGR+GR R +L V +A E PLDQY ++PE LF S +E + N VL H+ A
Sbjct: 389 QQAGRAGRSGRDALVVLMARENPLDQYLFEHPELLFSSSVESTVLHPDNPYVLGPHVAAA 448
Query: 679 ALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISI 738
A E LS DE+++GS + TL + L ++F + E+ I +
Sbjct: 449 AQEAYLSPA-DEEFYGSAFAGICKTLTGQNVLRR-----RGNRLF-WTRPERA-VDAIDL 500
Query: 739 RAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQK 798
R+ + ++ID+ + V+ ++E+ A V+ GAVY+HQG +LV E N AL +
Sbjct: 501 RSAAGKGIDIIDVSTGRVIGVVDEAAADRTVHPGAVYLHQGDQWLVDEYNPVEHHALVHQ 560
Query: 799 ADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALAC---TVTTTWFGFYRLWR 855
Y+T+ + + + + + +++ +AC +T G+ R
Sbjct: 561 DLPGYWTQPQSASTVRI----------LREERRRDCGPGYVACGQVELTEQVVGYLRRDE 610
Query: 856 GSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSG-LHAASHALLHVVPIY 914
+ ++D+V L +P ++ +QA W +P V ++ + +G H A H + ++P+Y
Sbjct: 611 ITNDVWDSVALEMPTHTMITQACWWVIPDKVVDDLKLDAVHLAGAAHGAEHTAIGLLPMY 670
Query: 915 VRCNFSDLA 923
C+ D+
Sbjct: 671 SPCDRWDVG 679
>gi|50841730|ref|YP_054957.1| helicase [Propionibacterium acnes KPA171202]
gi|50839332|gb|AAT81999.1| putative helicase [Propionibacterium acnes KPA171202]
Length = 754
Score = 341 bits (875), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 222/730 (30%), Positives = 363/730 (49%), Gaps = 96/730 (13%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATM 278
Q+V+++ A E P ++ + A+++ GI + + HQA + AG++ + T
Sbjct: 9 QVVYLDHREAAAGHTCEWPSWFPEDCRQAVEAAGIHRPWQHQARFAELARAGRHAAICTA 68
Query: 279 TSSGKSLCYNLPVLEALSHDLS--------------------SSALYMFPTKALAQDQLR 318
T+SGK+L Y LP++ A + +SALY+ PTKALA DQ R
Sbjct: 69 TASGKTLAYLLPIMAATASATPVVPESPTPGLPASLRDSLHRNSALYLAPTKALAHDQER 128
Query: 319 ALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILS 378
+ + DGD+ + +R + R+ AR ++TNPDMLH ++LP H +++ +L
Sbjct: 129 VCREVGPR---DWLVSTLDGDSDEAERRFAREQARYVLTNPDMLHHTVLPSHARWAGLLG 185
Query: 379 NLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPS 438
+LR +VVIDEAH Y+G FG H A ++RRL RLC ++G+DP
Sbjct: 186 SLR-------------------YVVIDEAHRYRGVFGAHVAQVIRRLRRLC-RMHGADPV 225
Query: 439 FVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMD 498
F+ S+ATS N E L + +E++ D SP + VLW P + +
Sbjct: 226 FLLSSATSTNAAEAGTRLLGVEKVEVVDEDCSPHPGRDVVLWQPAESIST---------- 275
Query: 499 DTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVD 558
+ + L A++ GL+ I F SR L E++ ++ ++ + A
Sbjct: 276 --------------DATGLVADLADAGLQTICFVASRSLAEVISAHAQDRVTSGA----- 316
Query: 559 SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLW 618
+ YRAGY+ EDRRRIE G + V ATNALELG+D+ +D + G+PG +++LW
Sbjct: 317 RVTAYRAGYLPEDRRRIEARLQDGSVRAVVATNALELGVDISGMDAVVIAGYPGRLSALW 376
Query: 619 QQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCA 678
QQAGR+GR R +L V +A E PLDQY ++PE LF S +E + N VL H+ A
Sbjct: 377 QQAGRAGRSGRDALVVLMARENPLDQYLFEHPELLFSSSVESTVLHPDNPYVLGPHVAAA 436
Query: 679 ALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISI 738
A E LS DE+++GS + TL + L ++F + E+ I +
Sbjct: 437 AQEAYLSPA-DEEFYGSAFAGICKTLTGQNVLRR-----RGNRLF-WTRPERA-VDAIDL 488
Query: 739 RAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQK 798
R+ + ++ID+ + V+ ++E+ A V+ GAVY+HQG +LV E N AL +
Sbjct: 489 RSAAGKGIDIIDVSTGRVIGGVDEAAADRTVHPGAVYLHQGDQWLVDEYNPVEHHALVHQ 548
Query: 799 ADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQA-LAC---TVTTTWFGFYRLW 854
Y+T+ + +A +I +++ + +AC +T G+ R
Sbjct: 549 DLPGYWTQPQ-----------SASTVRILREERRRACGPGYVACGQVELTEQVVGYLRRD 597
Query: 855 RGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSG-LHAASHALLHVVPI 913
+ ++D+V L +P ++ +QA W +P V ++ + +G H A H + ++P+
Sbjct: 598 EITNDVWDSVALEMPTHTMITQACWWVIPDKVVDDLKFDAVHLAGAAHGAEHTAIGLLPM 657
Query: 914 YVRCNFSDLA 923
Y C+ D+
Sbjct: 658 YSPCDRWDVG 667
>gi|448470031|ref|ZP_21600378.1| DEAD/DEAH box helicase [Halorubrum kocurii JCM 14978]
gi|445808476|gb|EMA58542.1| DEAD/DEAH box helicase [Halorubrum kocurii JCM 14978]
Length = 804
Score = 341 bits (875), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 237/786 (30%), Positives = 365/786 (46%), Gaps = 77/786 (9%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
+ +E LR +GQ+ + AR ++ L AL GI +LY HQAE+I
Sbjct: 3 DAIEWLRDRPFYEGQIAEHRRLPARAPSYRDV--DLAPRMADALAKDGIDRLYRHQAEAI 60
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL--LA 322
A G +VV+AT T+SGKSL Y +P EA + D LY+ P AL DQ L LA
Sbjct: 61 AAVRDGDDVVLATETASGKSLAYTVPAFEA-AMDHGGRTLYVGPQNALIADQEEGLSDLA 119
Query: 323 MTKAFDASIDIGVYDGDTTQKDRMWLRD-NARLLITNPDMLHMSILPYHGQFSRILSNLR 381
F + + + Y G ++ ++ +RD +L++NPDMLH ++LPY G R
Sbjct: 120 HGLGFGSGVAVDSYTGRLSRSEKRDVRDRQPTVLLSNPDMLHYALLPYAG---------R 170
Query: 382 LIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVF 441
L + F + +VVIDE H+Y+G FG A+ LRRL R C +GS P FV
Sbjct: 171 LWEW---------FFSSLEYVVIDEVHSYRGVFGSQVAMTLRRLARTCER-FGSSPQFVC 220
Query: 442 STATSANPREHCMELA--NLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDD 499
+AT NP EH + + + L+ D S + +VLWNP + D D
Sbjct: 221 CSATINNPVEHVATVTGRDPEGIALVDEDASGRGPRDWVLWNP----------PEYDDDW 270
Query: 500 TRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LVD 558
+ + S +E LF ++V G + +AF R+R+ E + + L E L
Sbjct: 271 RERGSGRRKSSHAESKRLFVDLVTAGAQTLAFTRARQTAEQYATDSASDLRERGERDLAG 330
Query: 559 SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLW 618
+ Y+A + RR IE D G L GV +T+ALELG+DVG +D + G+PG+ S +
Sbjct: 331 RVGAYQAALNDDRRREIEADLHAGDLRGVWSTSALELGVDVGGLDAVILDGYPGTRMSAY 390
Query: 619 QQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCA 678
Q+AGR+GR + P+L V V E LDQY M+ P F++P E D +N ++L H+ CA
Sbjct: 391 QRAGRAGRGDDPALVVMVGGEDQLDQYLMRNPTDFFEAPPEDAICDPENAQLLPGHVACA 450
Query: 679 ALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISI 738
A E LS DE++FG + L + G L D + + + G P ++S+
Sbjct: 451 ADESWLSPA-DERFFGEPFPGVVADLTDEGTLRRREVADGTR--WTHAGSSS-PQQSVSL 506
Query: 739 RAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQK 798
R ++ID NE + + A + GA+Y QG TY V L++ +A +
Sbjct: 507 RTAGDREVDLIDSSRNETIASLGFGDALRDAHPGAIYHQQGRTYEVATLDIDRDVAELRS 566
Query: 799 ADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSG 858
+ Y+T+ DI V NA + + TVT GF R +G
Sbjct: 567 SWADYYTQPLTEKDIVV----NADLGERELSARPDVPVRFADVTVTERITGFVRKDAKTG 622
Query: 859 IIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQ-------------------------- 892
L LP+ + ++A++ VP V++ +
Sbjct: 623 DSLGESTLDLPETTLRTKALYFPVPGDVESEMRALGGRDGTGGDTAGADDGAPAFDGGES 682
Query: 893 ----NFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGG 948
+F G+HAA H ++ + P ++ C+ +D+ P+ + +YD HPGG
Sbjct: 683 LSGGEHAFNGGIHAAEHGIISLFPFHLLCDRADVG-GISTPYHPHTDAPAVFVYDGHPGG 741
Query: 949 TGVSKQ 954
G++++
Sbjct: 742 VGLTRR 747
>gi|197301472|ref|ZP_03166551.1| hypothetical protein RUMLAC_00203 [Ruminococcus lactaris ATCC
29176]
gi|197299432|gb|EDY33953.1| putative CRISPR-associated helicase, Cyano-type [Ruminococcus
lactaris ATCC 29176]
Length = 910
Score = 341 bits (874), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 238/774 (30%), Positives = 377/774 (48%), Gaps = 82/774 (10%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+V+ + I A A V P+++ L+S GIS+LYSHQAE + + G+++V+ T T
Sbjct: 9 IVYEKVIPAHGAEYVSFPESMRPEIGDYLRSQGISRLYSHQAEMFVRAGEGESLVITTAT 68
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAF-DASIDIGVYDG 338
+SGK+L + LPVL+ + + + A++++PTKALA DQ R L + + F + I GVYDG
Sbjct: 69 ASGKTLSFLLPVLQQILENPLTRAIFIYPTKALASDQYRVLAPVLEYFGEGRISAGVYDG 128
Query: 339 DTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLF 398
DT +R +R +A +++TNP+ML+ + LP H ++ F IF
Sbjct: 129 DTMPAERSRVRKSANIILTNPEMLNAAFLPNHSKY----------GFDF-------IFAN 171
Query: 399 IRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELAN 458
+ ++VIDE H+Y+GAFG H A I RR+ R+C + Y SDP F+ S+AT ANP E ++
Sbjct: 172 LNYIVIDELHSYRGAFGGHLANIFRRMKRICGY-YHSDPQFLCSSATIANPVELAEKICG 230
Query: 459 LSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLF 518
+ T LI+ DGSP +K++ + P K D R +A+ S V L
Sbjct: 231 I-TPGLIERDGSPAPEKVYKILQPPEI------KGANDKVYGRYSAS------SVVKELI 277
Query: 519 AEMVQHGLRCIAFCRSRKLCELVLSYTREILEETA----PHLVDSICVYRAGYVAEDRRR 574
++V+ G + + F SR+ E++L +R+ LE+ D I YR GY +RR
Sbjct: 278 PKLVEKGEQFLVFTHSRRAVEVILKESRDRLEDAGFLGEKGQTDKIAGYRGGYTPLERRE 337
Query: 575 IERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAV 634
IER G+L G+ TNALELGID+G +D T+ +G+PG+ AS WQQ GR+GR R +
Sbjct: 338 IERKMMAGELTGLICTNALELGIDIGKLDCTVLVGYPGTRASFWQQTGRAGRCGRRCVNY 397
Query: 635 YVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFG 694
+ P DQY P+ LF+ E +D N + H+ AA E PLSL D+
Sbjct: 398 LILENQPFDQYIAISPDWLFEGRSENAIVDPDNLLIELAHIRAAAAEMPLSL--DDVALF 455
Query: 695 SGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN 754
L I L N L S A F + G P+ S+R ++ RY++I S
Sbjct: 456 PDLGEIIPVLLNA------QELKSLAGRFSWAG-PAFPAGDYSLRNMDRTRYKLIIYPSM 508
Query: 755 EVLE-----------------EIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQ 797
E L E++ES+AF +++ GAVY+H G Y V +L+L S+ AL
Sbjct: 509 EHLRNVQEKRKGSLFNGKEITEMDESQAFHELHPGAVYLHDGEQYEVLKLDLVSRTALAV 568
Query: 798 KADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGS 857
Y+T D + K+ + V + +L +
Sbjct: 569 PFYGNYYTVPSGTEDTRI-------LQTFQKETFKRIKKCFGDINVNEVISMYKKLQFHN 621
Query: 858 GIIFDTVELYLP-KYSYESQAVWIQVPQSVKAVVEQ--------NFSFRSGLHAASHALL 908
V L P + Y++++ WI++P+++ ++ + S+A+
Sbjct: 622 HQNLGYVSLTRPLQKDYDTESTWIEIPENIVDTYQRLLVPDQRGELVLNNHFEGISYAIK 681
Query: 909 HVVPIYVRCNFSDLAPECPN----PHDSRYFPERILLYDRHPGGTGVSKQVTDM 958
+ + D+ N P R + +YD++ GG G ++++ D+
Sbjct: 682 NAAMMVTMTEKDDIGVILSNNALIPGAERGRKVSLFIYDKYEGGLGYAEKIYDL 735
>gi|168040327|ref|XP_001772646.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676022|gb|EDQ62510.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1347
Score = 341 bits (874), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 266/879 (30%), Positives = 402/879 (45%), Gaps = 157/879 (17%)
Query: 181 SQSSTSSSHSFQRRCSDKSQLLPLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDAL 240
S+ ST SS + Q + S L LE V S+GQ++H+E I AR A L
Sbjct: 382 SRQSTQSSSAVQSNVT--SALHALEEV-------ASKGQILHIEKIPARPAAYTNQDFKL 432
Query: 241 LDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLS 300
+ AL+ G+ K YSHQA ++ A G ++V AT T+SGKS+ Y +PVL++L
Sbjct: 433 PKKLQKALQERGVKKFYSHQAAAMDAVFNGSSIVAATPTASGKSMTYIIPVLDSLLKVPK 492
Query: 301 SSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPD 360
S AL++FP KALA+DQL+ L + YDGDT + +R ++++TNPD
Sbjct: 493 SRALFIFPVKALARDQLKILSDLVAEVKKGSRCYCYDGDTDMDQKAHIRKTGKIVLTNPD 552
Query: 361 MLHMSILPYHGQFSRILSN--LRLIAFSLVTTEVYLI----FLFIRFVVIDEAHAYKGAF 414
MLH ILP+H SR++ R+++ S + + YL+ F ++FVV+DEAH Y+G F
Sbjct: 553 MLHFGILPHHKVKSRLMKTPLTRVLSQSDLDSLHYLLWEQFFSNLKFVVVDEAHTYRGIF 612
Query: 415 GCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQ 474
G H ILRRL R+ H YGS+P F+ +AT ANP +H +L + +E+I G+P +
Sbjct: 613 GSHVGCILRRLLRIARH-YGSEPMFICCSATIANPEQHVKKLTTID-MEVIHGSGAPAGE 670
Query: 475 KLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRS 534
K + W P +T+ + S E + +++ L+ + F +
Sbjct: 671 KYVLCWLPP---------------ETKYGVRR--SVYKEAVKIVVALIKADLQILVFVEA 713
Query: 535 RKLCELVLSYTREILEETAP---------------HLVDSICVYRAGYVAEDRRRIERDF 579
RK E+V RE L + P LV+ + YRAGY E+R +E+
Sbjct: 714 RKSSEIVCKLVREKLTKQEPTIAYENMILILQRRIDLVEKVDSYRAGYTQEERIALEKRL 773
Query: 580 FGGKLCGVAATNALELGID---------------------VGHIDVTLHLGFPGSIASLW 618
G+L + T ALELGID VG +D T+H+G P ++ SLW
Sbjct: 774 QDGELRALVTTRALELGIDLGSYLDKNAHKGLKRYNLYVKVGKLDATVHVGLPDTMCSLW 833
Query: 619 QQ-----------------------------------------AGRSGRRERPSLAVYVA 637
QQ AGR+GRR+ SLAV +
Sbjct: 834 QQEVPGFLNYLDFVITEGSVFDILVSVLLRSQSSEAVKSSEGHAGRAGRRQGASLAVILG 893
Query: 638 FEGPLDQYFMKYP------------EKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLS 685
E LD ++MK P E+LF +E + N VL L CAA E PLS
Sbjct: 894 RERSLDVFYMKNPQKARVLALLPVTERLFSRDVEQAVCNPTNPHVLRLQLPCAAQELPLS 953
Query: 686 LIYDEKYFGSGLSSGITTLKNRGYLS--SDPSLDSSAKIFEYIGHEKMPSHTISIRAIES 743
D +YFG L + G L + P +S ++ Y ++ P ISIR + S
Sbjct: 954 G-NDVEYFGENYKKTRDELVSEGILQYKTGPRGES---VYGY-RYDDHPGSEISIRGLSS 1008
Query: 744 ERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKY 803
R++++ NEV+EE++E A +Y+GA+Y H TY +K L++ +K A + +
Sbjct: 1009 NRFQLL-AGDNEVIEEVDEKMALRMLYDGAIYPHARDTYRIKHLDIKNKKAFGELCVKPH 1067
Query: 804 FTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDT 863
T+ T + + + T ++ L K L + Y L + + DT
Sbjct: 1068 MTEVSVKTKVQILDKMASRVTLGTRIHLGK-----LEVIEQVMGYSEYDLTQNKHV--DT 1120
Query: 864 VELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHV----VPIYVRCNF 919
V L P +++ +W +P V ++ H A LL V +P+
Sbjct: 1121 VMLKYPPTIFKTVGLWWDLPAEVMQKLK---------HMAYETLLVVRRVILPLLASMTM 1171
Query: 920 SD----LAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
SD L E H+ P+ I +YD GG G+++Q
Sbjct: 1172 SDPTDMLGLETLG-HEQTEQPQ-IFVYDAFAGGIGIAEQ 1208
>gi|442321042|ref|YP_007361063.1| DEAD-box ATP dependent DNA helicase [Myxococcus stipitatus DSM
14675]
gi|441488684|gb|AGC45379.1| DEAD-box ATP dependent DNA helicase [Myxococcus stipitatus DSM
14675]
Length = 805
Score = 341 bits (874), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 238/756 (31%), Positives = 372/756 (49%), Gaps = 74/756 (9%)
Query: 224 EDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGK 283
E AR IPD + + AL+ G+ +L+SHQAE+ + GKN+V+AT T+SGK
Sbjct: 45 EASPARVGSFAPIPDEVAPQVREALRLRGVEQLFSHQAEAYRLARGGKNLVIATPTASGK 104
Query: 284 SLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQK 343
SLCYNLP+L+ + + + ALY+FPTKAL++DQ +L A + + +DGDT
Sbjct: 105 SLCYNLPLLDRFAREPQARALYLFPTKALSRDQEESLRAFMREAGLTHGAITFDGDTPAD 164
Query: 344 DRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVV 403
R R+ +L+TNPDMLH ILP+H ++R+ SNL RFVV
Sbjct: 165 ARRAARERGGVLLTNPDMLHTGILPHHANWARLFSNL-------------------RFVV 205
Query: 404 IDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLE 463
IDE H Y+G FG H A +L R R + +GSDP F+ ++AT NP+ H + +E
Sbjct: 206 IDELHTYRGVFGSHLANVL-RRLRRVARFHGSDPVFIAASATIGNPQAHARRMLGCD-VE 263
Query: 464 LIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQ 523
L+ G+P ++ +++NP V+N R + KTS L A++V+
Sbjct: 264 LVSESGAPSGERRVMVFNP-----PVVNAEL----GIRASYLKTS------VRLTADLVR 308
Query: 524 HGLRCIAFCRSRKLCELVLSYTRE--ILEETAPHLVDSICVYRAGYVAEDRRRIERDFFG 581
G+ + F +SR E++L Y R+ + E+ P L+ YR GY+ RR E
Sbjct: 309 AGVSTLLFGQSRNNIEVMLKYLRDRFVEEKLDPSLIQG---YRGGYLPGTRRATEAALRA 365
Query: 582 GKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGP 641
G++ V ATNALELGID+G +D + G+PGS+A+L Q+ GR+GRR SLA+ V P
Sbjct: 366 GEVRCVVATNALELGIDIGSLDAVVCAGYPGSVAALMQRFGRAGRRGAGSLALLVTSSAP 425
Query: 642 LDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGI 701
LDQY P L +P+E ID N ++L QHL CA+ E P + + FG +
Sbjct: 426 LDQYLAADPRFLIGAPVEHARIDPDNVEILVQHLKCASFELPFE---EGEPFGDVPAE-- 480
Query: 702 TTLKNRGYLSS----DPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVL 757
+T + G+L+ P+ + + + P++ +S+R++ + +I+ ++ L
Sbjct: 481 STAEALGFLAQHEVVHPTAGEGGRRVFHWSSDAYPANHVSLRSVGWDNVVIIERGTDRTL 540
Query: 758 EEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSG 817
E++ A ++E A+Y H+ Y V+ + + A +K YFT Y ++V
Sbjct: 541 AEMDFRSAHTMLHEQAIYQHEAEQYQVEHFDYENHKAFVRKVAPDYFTDAMTYVRVNV-- 598
Query: 818 GNNAYATKISKDQLTKTTAQALA----CTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSY 873
I +DQ A +V G+ ++ + E+ LP+
Sbjct: 599 --------IQEDQGAAIGPSLQAGMGEVSVIEKVVGYKKIKYHTHENVGYGEVALPEMQM 650
Query: 874 ESQAVWIQVPQSV--------KAVVEQNFSFRSGLHAASHALLHVVP--IYVRCNFSDLA 923
+ A+W+ VP+SV AV++ + L + L + P I D A
Sbjct: 651 HTTALWLTVPESVVRSMNAPRPAVIDALRGVATALRTVACVGLMIDPRDIGKTLGSRDDA 710
Query: 924 PECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDMK 959
P F I LYD PGG G++ ++ D +
Sbjct: 711 EGPPRKDGGVGFDPTIFLYDNVPGGVGLAARLFDQR 746
>gi|380300649|ref|ZP_09850342.1| helicase family protein with metal-binding cysteine cluster
[Brachybacterium squillarum M-6-3]
Length = 836
Score = 340 bits (873), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 246/824 (29%), Positives = 383/824 (46%), Gaps = 129/824 (15%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E++ L + + +G + HVE AR+ P + L + GI+ ++HQ ++
Sbjct: 8 ELLRALGEPLTRRGCLTHVERRPAREGRRGSFPAWTDPRLREHLAARGITAPWTHQQQAA 67
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEAL-SHDLS-----SSALYMFPTKALAQDQLR 318
+ AG++VV+AT T+SGKSL Y LP+L A+ + +L ++ALY+ PTKALA DQL
Sbjct: 68 ELAQAGQDVVLATATASGKSLAYLLPLLSAVGTRELDPTARRATALYLSPTKALAADQLT 127
Query: 319 ALLAMTKAF---DASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSR 375
+ AM DA + VYDGDT + R W+R + +++TNPDMLH ILP H Q++
Sbjct: 128 NITAMADGAGIRDARV--AVYDGDTPSEQRRWIRRHGSVVLTNPDMLHFGILPGHEQWAS 185
Query: 376 ILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGS 435
F +R+VVIDE H+Y+G FG H AL++RRL R+ +H Y +
Sbjct: 186 F-------------------FRALRYVVIDECHSYRGVFGSHVALVMRRLRRIAAH-YRA 225
Query: 436 DPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQT 495
+P+F+ ++AT+A+P L ++ + DGSP A LW P + V + +
Sbjct: 226 EPTFILASATTAHPELSASRLIGRD-VQAVTEDGSPRAGLTVGLWEPGTRGAVVDGRPEQ 284
Query: 496 DMDDTRNAANKTSS----------------------------------PISEVSYLFAEM 521
D+R AA+ T S +E L A++
Sbjct: 285 AGHDSRTAADGTESTGDIAGSGGTADIGGTGSTGGAAGSGREEMLRRSATAEAGALLADL 344
Query: 522 VQHGLRCIAFCRSRKLCELVLSYTREILEETAPH--------LVDSICVYRAGYVAEDRR 573
V ++ + F RSR+ ELV R +L + A L + YR GY+A +RR
Sbjct: 345 VAEDVQTLVFARSRRGAELVSGTARRMLSQRAEEEHSGALADLAGRVAAYRGGYLAAERR 404
Query: 574 RIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQ-----AGRSGRRE 628
R+E D G+L +A+TNALELGID+ +D + G+PG+ ASLWQQ +G
Sbjct: 405 RLEDDLRSGELRALASTNALELGIDIAGLDAVVVAGWPGTRASLWQQMGRAGRRGAGGAG 464
Query: 629 RPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIY 688
+LA++VA E PLD Y + +PE + + +E D N V+ HL AA E +
Sbjct: 465 GGALALFVAREDPLDTYVVHHPETVLGAEVEAAVFDPANPYVMTPHLCAAASELAIK-DG 523
Query: 689 DEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEV 748
+E FG + TL RG L + P Y + +R E +
Sbjct: 524 EEGIFGPTARELLGTLAARGVLRARPG-------GWYWTLSQSAHDLTDLRGSGGEPVRI 576
Query: 749 IDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTR 808
++ S +L ++ + A QV++GAVY+HQG +Y+V L+ +A+ + D + T +
Sbjct: 577 VESGSGTLLGTVDAASADTQVHDGAVYLHQGRSYVVDHLDTEQAVAMVHREDPLHTTHPQ 636
Query: 809 DYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELY- 867
+ I + +T ++ W G RL G+ + D V Y
Sbjct: 637 STSSIRIR----------------QTDSE-------VPWAGGVRLCFGTVDVTDQVTGYQ 673
Query: 868 ----------------LPKYSYESQAVWIQVPQSVKAVVE-QNFSFRSGLHAASHALLHV 910
LP + ++AVW VP+ E LHAA HA + +
Sbjct: 674 VRDVFTQAVLAQHSLDLPPRTLTTKAVWWVVPRERTDAAEIPGEELPGALHAAEHAAISM 733
Query: 911 VPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
+P+ C+ D+ H+ P I +YD PGG G +++
Sbjct: 734 LPLLATCDRWDIGGVSTAQHEDTGEPT-IFVYDGAPGGAGFAER 776
>gi|289428844|ref|ZP_06430524.1| putative DEAH-box helicase [Propionibacterium acnes J165]
gi|289157845|gb|EFD06068.1| putative DEAH-box helicase [Propionibacterium acnes J165]
Length = 766
Score = 340 bits (873), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 222/730 (30%), Positives = 362/730 (49%), Gaps = 96/730 (13%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATM 278
Q+V+++ A E P ++ + A+++ GI + + HQA + AG++ + T
Sbjct: 21 QVVYLDHREAAAGHTCEWPSWFPEDCRQAVEAAGIHRPWQHQARFAELARAGRHAAICTA 80
Query: 279 TSSGKSLCYNLPVLEALSHDLS--------------------SSALYMFPTKALAQDQLR 318
T+SGK+L Y LP++ A + +SALY+ PTKALA DQ R
Sbjct: 81 TASGKTLAYLLPIMAATASATPVVPESPTPGLPASLRDSLHRNSALYLAPTKALAHDQER 140
Query: 319 ALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILS 378
+ + DGD+ + +R R+ AR ++TNPDMLH ++LP H +++ +L
Sbjct: 141 VCREVGPR---DWLVSTLDGDSDEAERRSAREQARYVLTNPDMLHHTVLPSHARWAGLLG 197
Query: 379 NLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPS 438
+LR +VVIDEAH Y+G FG H A ++RRL RLC ++G+DP
Sbjct: 198 SLR-------------------YVVIDEAHRYRGVFGAHVAQVIRRLRRLC-RMHGADPV 237
Query: 439 FVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMD 498
F+ S+ATS N E L + +E++ D SP + VLW P + +
Sbjct: 238 FLLSSATSTNAAEAGTRLLGVEKVEVVDEDCSPHPGRDVVLWQPAESIST---------- 287
Query: 499 DTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVD 558
+ + L A++ GL+ I F SR L E++ ++ ++ + A
Sbjct: 288 --------------DATGLVADLADAGLQTICFVASRSLAEVISAHAQDRVTSGA----- 328
Query: 559 SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLW 618
+ YRAGY+ EDRRRIE G + V ATNALELG+D+ +D + G+PG +++LW
Sbjct: 329 RVTAYRAGYLPEDRRRIEARLQDGSVRAVVATNALELGVDISGMDAVVIAGYPGRLSALW 388
Query: 619 QQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCA 678
QQAGR+GR R +L V +A E PLDQY ++PE LF S +E + N VL H+ A
Sbjct: 389 QQAGRAGRSGRDALVVLMARENPLDQYLFEHPELLFSSSVESTVLHPDNPYVLGPHVAAA 448
Query: 679 ALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISI 738
A E LS DE+++GS + TL + L ++F + E+ I +
Sbjct: 449 AQEAYLSPA-DEEFYGSAFAGICKTLTGQNVLRR-----RGNRLF-WTRPERA-VDAIDL 500
Query: 739 RAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQK 798
R+ + ++ID+ + V+ ++E+ A V+ GAVY+HQG +LV E N AL +
Sbjct: 501 RSAAGKGIDIIDVSTGRVIGGVDEAAADRTVHPGAVYLHQGDQWLVDEYNPVEHHALVHQ 560
Query: 799 ADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQA-LAC---TVTTTWFGFYRLW 854
Y+T+ + +A +I +++ + +AC +T G+ R
Sbjct: 561 DLPGYWTQPQ-----------SASTVRILREERRRACGPGYVACGQVELTEQVVGYLRRD 609
Query: 855 RGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSG-LHAASHALLHVVPI 913
+ ++D+V L +P ++ +QA W +P V ++ + +G H A H + ++P+
Sbjct: 610 EITNDVWDSVALEMPTHTMITQACWWVIPDKVVDDLKFDAVHLAGAAHGAEHTAIGLLPM 669
Query: 914 YVRCNFSDLA 923
Y C+ D+
Sbjct: 670 YSPCDRWDVG 679
>gi|386023190|ref|YP_005941493.1| ATP-dependent helicase YprA [Propionibacterium acnes 266]
gi|332674646|gb|AEE71462.1| ATP-dependent helicase YprA [Propionibacterium acnes 266]
Length = 754
Score = 340 bits (872), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 222/730 (30%), Positives = 362/730 (49%), Gaps = 96/730 (13%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATM 278
Q+V+++ A E P ++ + A+++ GI + + HQA + AG++ + T
Sbjct: 9 QVVYLDHREAAAGHTCEWPSWFPEDCRQAVEAAGIHRPWQHQARFAELARAGRHAAICTA 68
Query: 279 TSSGKSLCYNLPVLEALSHDLS--------------------SSALYMFPTKALAQDQLR 318
T+SGK+L Y LP++ A + +SALY+ PTKALA DQ R
Sbjct: 69 TASGKTLAYLLPIMAATASATPVVPESPTPGLPASLRDSLHRNSALYLAPTKALAHDQER 128
Query: 319 ALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILS 378
+ + DGD+ + +R R+ AR ++TNPDMLH ++LP H +++ +L
Sbjct: 129 VCREVGPR---DWLVSTLDGDSDEAERRSAREQARYVLTNPDMLHHTVLPSHARWAGLLG 185
Query: 379 NLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPS 438
+LR +VVIDEAH Y+G FG H A ++RRL RLC ++G+DP
Sbjct: 186 SLR-------------------YVVIDEAHRYRGVFGAHVAQVIRRLRRLC-RMHGADPV 225
Query: 439 FVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMD 498
F+ S+ATS N E L + +E++ D SP + VLW P + +
Sbjct: 226 FLLSSATSTNAAEAGTRLLGVEKVEVVDEDCSPHPGRDVVLWQPAESIST---------- 275
Query: 499 DTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVD 558
+ + L A++ GL+ I F SR L E++ ++ ++ + A
Sbjct: 276 --------------DATGLVADLADAGLQTICFVASRSLAEVISAHAQDRVTSGA----- 316
Query: 559 SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLW 618
+ YRAGY+ EDRRRIE G + V ATNALELG+D+ +D + G+PG +++LW
Sbjct: 317 RVTAYRAGYLPEDRRRIEARLQDGSVRAVVATNALELGVDISGMDAVVIAGYPGRLSALW 376
Query: 619 QQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCA 678
QQAGR+GR R +L V +A E PLDQY ++PE LF S +E + N VL H+ A
Sbjct: 377 QQAGRAGRSGRDALVVLMARENPLDQYLFEHPELLFSSSVESTVLHPDNPYVLGPHVAAA 436
Query: 679 ALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISI 738
A E LS DE+++GS + TL + L ++F + E+ I +
Sbjct: 437 AQEAYLSPA-DEEFYGSAFAGICKTLTGQNVLRR-----RGNRLF-WTRPERA-VDAIDL 488
Query: 739 RAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQK 798
R+ + ++ID+ + V+ ++E+ A V+ GAVY+HQG +LV E N AL +
Sbjct: 489 RSAAGKGIDIIDVSTGRVIGGVDEAAADRTVHPGAVYLHQGDQWLVDEYNPVEHHALVHQ 548
Query: 799 ADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQA-LAC---TVTTTWFGFYRLW 854
Y+T+ + +A +I +++ + +AC +T G+ R
Sbjct: 549 DLPGYWTQPQ-----------SASTVRILREERRRACGPGYVACGQVELTEQVVGYLRRD 597
Query: 855 RGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSG-LHAASHALLHVVPI 913
+ ++D+V L +P ++ +QA W +P V ++ + +G H A H + ++P+
Sbjct: 598 EITNDVWDSVALEMPTHTMITQACWWVIPDKVVDDLKFDAVHLAGAAHGAEHTAIGLLPM 657
Query: 914 YVRCNFSDLA 923
Y C+ D+
Sbjct: 658 YSPCDRWDVG 667
>gi|354611334|ref|ZP_09029290.1| Protein of unknown function DUF1998 [Halobacterium sp. DL1]
gi|353196154|gb|EHB61656.1| Protein of unknown function DUF1998 [Halobacterium sp. DL1]
Length = 765
Score = 340 bits (872), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 241/757 (31%), Positives = 367/757 (48%), Gaps = 59/757 (7%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
++ + LR GQ+ H + R+A ++ L SAL GI +LY HQAE+I
Sbjct: 3 DLADWLRNRHHYSGQLTHERTLPGREARTEDV--KLEPRLASALADRGIDQLYDHQAEAI 60
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLE-ALSHDLSSSALYMFPTKALAQDQLRAL--L 321
A G +VVVAT T+SGKSL Y +P E A+ H LY+ P AL DQ L L
Sbjct: 61 GAVRGGGDVVVATPTASGKSLAYTVPAFERAMDH--GGRTLYIGPQNALVADQRETLSSL 118
Query: 322 AMTKAFDASIDIGVYDGDTTQKDRMWLRDN-ARLLITNPDMLHMSILPYHGQFSRILSNL 380
A F + + + Y G ++ ++ +RD +L+TNPDMLH ++LP HG
Sbjct: 119 AADLGFGSRVQVDTYTGRLSKSEKEAVRDRMPTVLLTNPDMLHYALLP-HGH-------- 169
Query: 381 RLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFV 440
RL + F + VV+DE H Y+G FG H +L++RRL R+C + + P FV
Sbjct: 170 RLWEW---------FFSGLETVVLDEVHEYRGVFGGHVSLVMRRLRRVCER-FDASPQFV 219
Query: 441 FSTATSANPREHCMELANL--STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMD 498
+AT NP EH + S L+ D S + ++LWNP + D
Sbjct: 220 CCSATIGNPVEHAARVTGKPESGFALVDEDTSETGRTHWLLWNP----------PEQDGG 269
Query: 499 DTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETA-PHLV 557
+ R ++ E +L A++V G + +AF RSR+ E + T + L E L
Sbjct: 270 EGRRRSSHV-----ETRHLMADLVTRGHQTLAFTRSRQGAERNAAATADDLGERGHSELA 324
Query: 558 DSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASL 617
D+I Y+ + RR +E G L GV +TNALELG+DVG +D L G+PG+ +
Sbjct: 325 DAIAAYQGSLTDDRRRDLESRLHDGDLRGVWSTNALELGVDVGGLDAVLLDGYPGTKMNT 384
Query: 618 WQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVC 677
+Q+AGR+GR + V VA E LDQY M +PE+LF E +D N +L+ HL
Sbjct: 385 FQRAGRAGRGTDDAAVVLVAGEDQLDQYVMAHPEELFDGAPERAVVDPANEHILDDHLRS 444
Query: 678 AALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTIS 737
AA E+ L D++YF + L++ G L + + Y G + P H +S
Sbjct: 445 AARENWLK-PDDDQYFPR-FEERVEVLEDEGELERRST--EYGTRWTYSG-DGSPQHEMS 499
Query: 738 IRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQ 797
+R I+ ++D SN+ L ++ S A + GA+Y HQG Y V +L+L +A Q
Sbjct: 500 LRTIDDREVRLLD-GSNDTLATLQFSDAIRDAHPGAIYHHQGQRYEVSDLDLERCVARLQ 558
Query: 798 KADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALA-CTVTTTWFGFYRLWRG 856
++T+ I V A + + A T+TT G+ R
Sbjct: 559 PTWADHYTRVLTEKTIEVE------ADREERYPFAHDVPVRFADITLTTAVTGYERRDPK 612
Query: 857 SGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVR 916
G DT+ L LP+ + +++A++ VP+ V+A + +HAA HA++ + P +
Sbjct: 613 RGETIDTLSLNLPEQTLDTRALYFTVPRDVEAELRAGGDLPGAIHAAEHAMISMFPTELL 672
Query: 917 CNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSK 953
C+ D+ H P I +YD +PGG G+++
Sbjct: 673 CDRGDIGGLSTPLHPWTGRPT-IFVYDGYPGGVGLTR 708
>gi|322369654|ref|ZP_08044218.1| ATP-dependent helicase [Haladaptatus paucihalophilus DX253]
gi|320550824|gb|EFW92474.1| ATP-dependent helicase [Haladaptatus paucihalophilus DX253]
Length = 772
Score = 340 bits (872), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 231/767 (30%), Positives = 361/767 (47%), Gaps = 69/767 (8%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
+ ++ LR +GQ+ E +S ++P L +SAL+ GI +LY HQAE++
Sbjct: 3 DTIDWLRGRPYYEGQIARHETVSGNDGEFRDLP--LESRLESALEKRGIDRLYRHQAEAV 60
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLE-ALSHDLSSSALYMFPTKALAQDQLRAL--L 321
+ GKN V+AT T+SGKSL Y +P E A+ H LY+ P AL DQ L L
Sbjct: 61 ESVRDGKNAVIATQTASGKSLAYTIPAFERAMDH--GGRTLYIAPQNALINDQEETLSEL 118
Query: 322 AMTKAFDASIDIGVYDGDTTQKDRMWLRDN-ARLLITNPDMLHMSILPYHGQFSRILSNL 380
A F + + + Y G + ++ +RD +++T PDMLH ++LPY
Sbjct: 119 ARDLGFGSRVSVAQYTGRLDKNEKRAVRDRMPTVVLTTPDMLHYALLPY---------AH 169
Query: 381 RLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFV 440
RL + F + VVIDE H Y+G FG H AL+LRRL R+C + +DP FV
Sbjct: 170 RLWDW---------FFKGLETVVIDEVHEYRGVFGSHVALVLRRLARVCER-FDADPQFV 219
Query: 441 FSTATSANPREHCMELANLS--TLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMD 498
+AT NP EH + + +L+ + S ++LWNP D
Sbjct: 220 CCSATIGNPVEHASAVTGQPEPSFDLVDENTSRTGPTHWLLWNPPEY-----------ED 268
Query: 499 DTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCE-LVLSYTREILEETAPHLV 557
D + S E +FA++V + + F R+R+ E + E+ L
Sbjct: 269 DRYGGTKRRKSNHGETKRIFADLVGRDCQTLVFTRARQAAERYAMESADELRRRGDGDLA 328
Query: 558 DSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASL 617
+ I Y+A + RR +E G + G +TNALELG+D+G +D L G+PG+ +
Sbjct: 329 NDIAAYQAALRNDRRRELEDGLHSGTVRGAWSTNALELGVDIGGLDAVLLDGYPGTRMAT 388
Query: 618 WQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVC 677
+QQAGR+GR PSL VA E LDQY M P++ F E ++ +N ++L H+
Sbjct: 389 FQQAGRAGRGTDPSLVALVAGEDQLDQYLMANPDEFFSGDPERAVVNPENAELLPSHVAS 448
Query: 678 AALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTIS 737
AA E LS DE YFG+ + L+ RG L +S + G + P H +S
Sbjct: 449 AARETWLS-PEDETYFGTDFPELVADLEARGELE---RRQTSGGVRWVYGGDGSPQHEMS 504
Query: 738 IRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQ 797
+R I+ +++D +V+ + S A + GA+Y QG +Y V +L+LS +A
Sbjct: 505 LRTIDDREIDLLDRSRGDVIASLPFSDALNDAHPGAIYHQQGQSYEVVDLDLSRDVAELS 564
Query: 798 KADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTV-------TTTWFGF 850
Y TKT TD ++ + +D K+ CTV GF
Sbjct: 565 PTWADYHTKT--LTDKEIT---------VEEDLAEKSLPTREDCTVRFADVTMRKRITGF 613
Query: 851 YRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSV-KAVVEQNFSFRSGLHAASHALLH 909
R G L LP+ + ++A++ +P + + + + F +HAA H ++
Sbjct: 614 ERRDAKRGETLGRESLSLPELTLRTKALYFTIPDDLERELRAMDGDFNGAIHAAEHGMIS 673
Query: 910 VVPIYVRCNFSDLAP-ECP-NPHDSRYFPERILLYDRHPGGTGVSKQ 954
+ P+ + C+ D+ P +PH I +YD +PGG G++++
Sbjct: 674 LFPLELLCDRGDIGGLSTPLHPHTG---TSTIFIYDGYPGGVGLTRE 717
>gi|354548293|emb|CCE45029.1| hypothetical protein CPAR2_700330 [Candida parapsilosis]
Length = 1129
Score = 340 bits (871), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 251/800 (31%), Positives = 396/800 (49%), Gaps = 97/800 (12%)
Query: 216 SQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASL---AGKN 272
SQ SA +A+ E+ +AL N+KS G LY+HQA+++ L +
Sbjct: 266 SQPPQFETISTSASEALHPELREALW-NSKSIDVDKG---LYTHQAQALDTLLDESKKAH 321
Query: 273 VVVATMTSSGKSLCYNLPVLEALSHDLS-------SSALYMFPTKALAQDQLRALLAMTK 325
++V+T T+SGKSL Y LPVL ++ D++ ++AL++FPTKALAQDQ++ +
Sbjct: 322 LIVSTSTASGKSLIYQLPVLNSILWDMTNGMKGRHTTALFIFPTKALAQDQIKQFQFLLN 381
Query: 326 AFDAS----IDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPY--HGQFSRILSN 379
++ I I YDGDT +R + + +L TNPD +H SILP G + +
Sbjct: 382 RLPSNNKRPIVINTYDGDTPFTERAQISKESDILFTNPDTIHASILPNCNFGSWREFIKG 441
Query: 380 LRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSF 439
L+ +VV+DE H YKG FG + ++ RL R+ + F
Sbjct: 442 LK-------------------YVVVDELHIYKGTFGINVGYVMARLSRIKDRFCPDEKGF 482
Query: 440 VF--STATSANPREHCMELANLSTLELI---QNDGSPCAQKLFVLWNPTSCLRSVLNKSQ 494
F +AT +P +H + ++S + I NDGS +K ++WNP + +
Sbjct: 483 CFVSCSATINDPIQHFRTICSISEGQQIVHISNDGSAKCEKKMLVWNPPVLMNN------ 536
Query: 495 TDMDDTRNAANKTSSPISEVSYLFAE--------MVQHGLRCIAFCRSRKLCELVLSYTR 546
R + +S I+ VS +F GL+ I FC R + E+++ R
Sbjct: 537 ---RGIRGPTDSSSKLITRVSPIFESARLLLTLLTELQGLKIIVFCPIRVVSEMMMREVR 593
Query: 547 EILEE---TAPHLVDS-ICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHI 602
+L++ + LV S I YR GY DRR IE+ F G+L + ATNALELGID+ +
Sbjct: 594 TLLQKPPFSKSGLVQSDIMSYRGGYSKSDRRIIEKKMFDGQLRAIIATNALELGIDLSDL 653
Query: 603 DVTLHLGFPGSIASLWQQAGRSGRRE--RPSLAVYVAFEGPLDQYFMKYPEKLFKSPIEC 660
DV + GFP S ++L QQ GR+GRR+ R S+ +YV P+DQY++++ + L + E
Sbjct: 654 DVVITCGFPMSKSNLHQQFGRAGRRKDARGSVVIYVPGRSPIDQYYVEHADDLVHNTYED 713
Query: 661 CHIDA-----QNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPS 715
+D+ +LE+HL CAA E + L YD K+F G S L
Sbjct: 714 LCVDSLRDMEHGSLILERHLQCAAYEEAIDLNYDYKWFSKGRSFN----SFEKILKEQLV 769
Query: 716 LDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNE--VLEEIEESKAFFQVYEGA 773
D K + PS +SIR +E + V+D+ +N V+EE+E S+ F +YEG
Sbjct: 770 QDVGDKFIPSSKYMPKPSKLVSIRVVEDDNVAVVDITNNRNIVIEEVELSRTVFTIYEGG 829
Query: 774 VYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYA-TKISKDQLT 832
+++HQG YLVKE N K A ++ ++ + T RDYTD+ + I+ +
Sbjct: 830 IFLHQGQPYLVKEFNHEQKYAKVERVNVDWTTSQRDYTDVDPEEVDLVKPLVPITSKKPV 889
Query: 833 KTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVP-QSVKAVVE 891
A +T FGF+++ R I+ + VE+ P ++ W+ VP ++++ +
Sbjct: 890 DIPAFFGLIKITMKVFGFFKVNRKEEIL-EVVEVNNPPVEAYAKGCWLNVPKEAIEIIKA 948
Query: 892 QNFSFRSGLHAASHALLHVVPIYV-----RCNFSD--LAPECPNP-------HDSRYFPE 937
++ S G+HAA+H +++++PI+V N D LA EC P R P
Sbjct: 949 KHLSAAGGIHAAAHGIMNMLPIFVNYSQANANLGDFELATECKAPTKEFKATKSERKRPA 1008
Query: 938 RILLYDRHPG--GTGVSKQV 955
R++ YD G G+G S ++
Sbjct: 1009 RLVFYDTKGGKKGSGYSYKI 1028
>gi|407934623|ref|YP_006850265.1| DEAD/DEAH box helicase [Propionibacterium acnes C1]
gi|407903204|gb|AFU40034.1| putative DEAH-box helicase [Propionibacterium acnes C1]
Length = 766
Score = 340 bits (871), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 222/730 (30%), Positives = 361/730 (49%), Gaps = 96/730 (13%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATM 278
Q+V++ A E P ++ + A+++ GI + + HQA + AG++ + T
Sbjct: 21 QVVYLAHREAAAGHTCEWPSWFPEDCRQAVEAAGIHRPWQHQARFAELARAGRHAAICTA 80
Query: 279 TSSGKSLCYNLPVLEALSHDLS--------------------SSALYMFPTKALAQDQLR 318
T+SGK+L Y LP++ A + +SALY+ PTKALA DQ R
Sbjct: 81 TASGKTLAYLLPIMAATASATPVVPESPTPGLPASLRDSLHRNSALYLAPTKALAHDQER 140
Query: 319 ALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILS 378
+ + DGD+ + +R R+ AR ++TNPDMLH ++LP H +++ +L
Sbjct: 141 VCREVGPR---DWLVSTLDGDSDEAERRSAREQARYVLTNPDMLHHTVLPSHARWAGLLG 197
Query: 379 NLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPS 438
+LR +VVIDEAH Y+G FG H A ++RRL RLC ++G+DP
Sbjct: 198 SLR-------------------YVVIDEAHRYRGVFGAHVAQVIRRLRRLC-RMHGADPV 237
Query: 439 FVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMD 498
F+ S+ATS N E L + +E++ D SP + VLW P + +
Sbjct: 238 FLLSSATSTNAAEAGTRLLGVEKVEVVDEDCSPHPGRDVVLWQPAESIST---------- 287
Query: 499 DTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVD 558
+ + L A++ GL+ I F SR L E++ ++ ++ + A
Sbjct: 288 --------------DATGLVADLADAGLQTICFVASRSLAEVISAHAQDRVTSGA----- 328
Query: 559 SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLW 618
+ YRAGY+ EDRRRIE G + V ATNALELG+D+ +D + G+PG +++LW
Sbjct: 329 RVTAYRAGYLPEDRRRIEARLQDGSVRAVVATNALELGVDISGMDAVVIAGYPGRLSALW 388
Query: 619 QQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCA 678
QQAGR+GR R +L V +A E PLDQY ++PE LF S +E + N VL H+ A
Sbjct: 389 QQAGRAGRSGRDALVVLMARENPLDQYLFEHPELLFSSSVESTVLHPDNPYVLGPHVAAA 448
Query: 679 ALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISI 738
A E LS DE+++GS + TL + L ++F + E+ I +
Sbjct: 449 AQEAYLSPA-DEEFYGSAFAGICKTLTGQNVLRR-----RGNRLF-WTRPERA-VDAIDL 500
Query: 739 RAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQK 798
R+ + ++ID+ + V+ ++E+ A V+ GAVY+HQG +LV E N AL +
Sbjct: 501 RSAAGKGIDIIDVSTGRVIGGVDEAAADRTVHPGAVYLHQGDQWLVDEYNPVEHHALVHQ 560
Query: 799 ADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQA-LAC---TVTTTWFGFYRLW 854
Y+T+ + +A +I +++ + +AC +T G+ R
Sbjct: 561 DLPGYWTQPQ-----------SASTVRILREERRRACGPGYVACGQVELTEQVVGYLRRD 609
Query: 855 RGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSG-LHAASHALLHVVPI 913
+ ++D+V L +P ++ +QA W +P V ++ + +G H A H + ++P+
Sbjct: 610 EITNDVWDSVALEMPTHTMITQACWWVIPDKVVDDLKFDAVHLAGAAHGAEHTAIGLLPM 669
Query: 914 YVRCNFSDLA 923
Y C+ D+
Sbjct: 670 YSPCDRWDVG 679
>gi|226322867|ref|ZP_03798385.1| hypothetical protein COPCOM_00639 [Coprococcus comes ATCC 27758]
gi|225208653|gb|EEG91007.1| putative CRISPR-associated helicase, Cyano-type [Coprococcus comes
ATCC 27758]
Length = 906
Score = 340 bits (871), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 236/776 (30%), Positives = 376/776 (48%), Gaps = 76/776 (9%)
Query: 206 MVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIM 265
M E ++K I ++ + R+ + + P+ + + L+S IS+LY+HQ E
Sbjct: 5 MTEEIKKLI------IYTRKMKKREPLYRDYPEEFREEIRGYLESNHISRLYAHQVEMFE 58
Query: 266 ASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTK 325
AG+NVV+ T T+SGK+L + LPVL+ + D + A++++PTKALA DQ RA+ ++ K
Sbjct: 59 KVRAGENVVITTSTASGKTLAFLLPVLQKILEDPLTRAIFIYPTKALASDQYRAMQSILK 118
Query: 326 AF-DASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
F + + GVYDGDT +R +R +A +++TNP+ML+ + LP H SN A
Sbjct: 119 FFGEGRVSAGVYDGDTKPAERTRIRKSANIILTNPEMLNSAFLPNH-------SNYGFDA 171
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
IF +R+VVIDE H+Y+GAFG H A I RR+ R+C + Y S+P F+ S+A
Sbjct: 172 ----------IFANLRYVVIDELHSYRGAFGAHLANIFRRMHRICRY-YHSNPHFLCSSA 220
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAA 504
T ANP E ++ S LI DGSP +K + + P K D R AA
Sbjct: 221 TIANPVELAEKICG-SGFTLIDRDGSPAPEKEYCIIQPPEI------KGNNDKVYGRIAA 273
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETA---------PH 555
+ ++ L E+V+ I F RSR+ E++L ++ L+ +
Sbjct: 274 STVAAG------LIPELVEEDHHFITFGRSRRNVEVILKEAKDKLDAAGFLGMARVGGKN 327
Query: 556 LVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIA 615
D I YR GY +R+ IER G+L G+ +TNALELGID+G +D T+ +G+PG+ A
Sbjct: 328 PADLIAGYRGGYTPLERKEIERKMTEGELTGLVSTNALELGIDIGKLDATVIVGYPGTRA 387
Query: 616 SLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHL 675
S WQQ+GR+GR + + P DQY PE LF E +D N + HL
Sbjct: 388 SFWQQSGRAGRSGSACVNYLILENEPFDQYIAIDPEWLFSRESENAIVDPDNLLIELAHL 447
Query: 676 VCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHT 735
AA E PLSL D+ L I L + G + S A F + G P+
Sbjct: 448 RAAAAEMPLSL--DDIALFPDLGEMIPVLLSAG------EVKSLAGRFAWAG-PAFPAGD 498
Query: 736 ISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIAL 795
S+R I+ R++++ + + E++ES+A+ +++ GAVYMH G +Y + +++L S+ A
Sbjct: 499 YSLRNIDKTRFKLLAQEDGHEITEMDESQAYHEIHPGAVYMHDGASYEITKMDLVSRTAY 558
Query: 796 CQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWR 855
T DY + +D +T + V + +L
Sbjct: 559 A-------IPFTGDYYTVPAGQEETRILHVFQEDAYQRTEIRFGDINVNEIIAMYKKLQF 611
Query: 856 GSGIIFDTVELYLP-KYSYESQAVWIQVPQSVKAVVEQ--------NFSFRSGLHAASHA 906
+ V L P + Y +++ W+ +P++V V + +A
Sbjct: 612 HNHQNLGYVTLTQPLQKDYGTESTWLTMPENVVRVYRSLLLPNRMGELVLNNHFDGMQYA 671
Query: 907 LLHVVPIYVRCNFSDLAPECPN----PHDSRYFPERILLYDRHPGGTGVSKQVTDM 958
+ + V + D+ N P + R + +YD++ GG G S+++ D+
Sbjct: 672 IKNAVMMVTMTERDDIDVTMSNNATIPDEFREEKVSLFIYDKYEGGLGYSEKIYDL 727
>gi|222479859|ref|YP_002566096.1| DEAD/DEAH box helicase [Halorubrum lacusprofundi ATCC 49239]
gi|222452761|gb|ACM57026.1| DEAD/DEAH box helicase domain protein [Halorubrum lacusprofundi
ATCC 49239]
Length = 807
Score = 339 bits (870), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 238/789 (30%), Positives = 363/789 (46%), Gaps = 80/789 (10%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
+ +E LR +GQ+ + AR+ ++ L AL GI +LY HQ E+I
Sbjct: 3 DAIEWLRNRPFYEGQIAEHRRLPAREPAYRDV--DLAPRMADALAKDGIDRLYRHQVEAI 60
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL--LA 322
A G + V+AT T+SGKSL Y +P EA + D LY+ P AL DQ +L LA
Sbjct: 61 EAVRDGDDAVLATETASGKSLAYTVPAFEA-AMDHGGRTLYVGPQNALIADQEESLSELA 119
Query: 323 MTKAFDASIDIGVYDGDTTQKDRMWLRD-NARLLITNPDMLHMSILPYHGQFSRILSNLR 381
F + + + Y G ++ ++ +RD +L++NPDMLH ++LPY G R
Sbjct: 120 HGLGFGSGVSVESYTGRLSRGEKRDVRDREPTVLLSNPDMLHYALLPYAG---------R 170
Query: 382 LIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVF 441
L + F + +VVIDE H+Y+G FG A+ LRRL R C +GS P FV
Sbjct: 171 LWDW---------FFSSLEYVVIDEVHSYRGVFGSQVAMTLRRLARTCER-FGSSPQFVC 220
Query: 442 STATSANPREHCMELA--NLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDD 499
+AT NP EH + + + + L+ D S + +VLWNP + D D
Sbjct: 221 CSATINNPVEHVATVTGRDPTGITLVDEDTSGRGPRDWVLWNP----------PEYDDDW 270
Query: 500 TRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LVD 558
+ + S +E LF ++V G + +AF R+R+ E + + L E L
Sbjct: 271 QERGSGRRKSSHTESKRLFVDLVTAGAQTLAFTRARQTAEQYATDSASDLRERGERGLAG 330
Query: 559 SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLW 618
+ Y+A + RR IE D G L GV +T+ALELG+DVG +D + G+PG+ S +
Sbjct: 331 KVGAYQAALNDDRRREIEADLHSGDLRGVWSTSALELGVDVGGLDAVILDGYPGTRMSAY 390
Query: 619 QQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCA 678
Q+AGR+GR + P+L V V E LDQY M+ P F++P E D +N ++L H+ CA
Sbjct: 391 QRAGRAGRGDDPALVVMVGGEDQLDQYLMRNPSDFFEAPPEDAICDPENGQLLPGHVACA 450
Query: 679 ALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISI 738
A E LS DE++FG + L + G L D I P +S+
Sbjct: 451 ADESWLSPA-DERFFGETFPGVVADLTDEGILDRREVADG---IRWTHAGSSSPQQAVSL 506
Query: 739 RAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQK 798
R ++ID NE + + A + GA+Y QG TY V L+L +A Q
Sbjct: 507 RTAGDREIDLIDSSRNETVASLGFGDALRDAHPGAIYHQQGRTYEVTNLDLDRDVAELQS 566
Query: 799 ADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSG 858
+ Y+T+ DI V NA + + TVT GF R +G
Sbjct: 567 SWADYYTQPLTEKDIVV----NADLGERELSARPDVPVRFADVTVTEQITGFVRKDTATG 622
Query: 859 IIFDTVELYLPKYSYESQAVWIQVPQSV--------------------------KAVVEQ 892
L LP+ + ++A++ VP + +AV +
Sbjct: 623 ESLGESVLDLPETTLRTKALYFPVPGDIESEMRALGARDADADGTNEAADADDTEAVTDG 682
Query: 893 N-------FSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRH 945
+F G+HAA H ++ + P ++ C+ +D+ P+ + +YD H
Sbjct: 683 GEGLSGGEHAFNGGIHAAEHGIISLFPFHLLCDRADIG-GISTPYHPHTDAPAVFVYDGH 741
Query: 946 PGGTGVSKQ 954
PGG G++++
Sbjct: 742 PGGVGLTRR 750
>gi|448439510|ref|ZP_21588074.1| DEAD/DEAH box helicase [Halorubrum saccharovorum DSM 1137]
gi|445691044|gb|ELZ43239.1| DEAD/DEAH box helicase [Halorubrum saccharovorum DSM 1137]
Length = 810
Score = 339 bits (869), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 235/791 (29%), Positives = 366/791 (46%), Gaps = 82/791 (10%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
+ +E LR +GQ+ + AR+ +I L AL GI +LY HQAE+I
Sbjct: 3 DAIEWLRNRPFYEGQIAEHRRLPAREPAYRDI--DLAPRMADALAKAGIDRLYRHQAEAI 60
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL--LA 322
G + V+AT T+SGKSL Y +P EA + D LY+ P AL DQ +L LA
Sbjct: 61 EVVRDGDDAVLATETASGKSLAYTVPAFEA-AMDHGGRTLYIGPQNALIADQEESLSDLA 119
Query: 323 MTKAFDASIDIGVYDGDTTQKDRMWLRD-NARLLITNPDMLHMSILPYHGQFSRILSNLR 381
F + + + Y G ++ ++ +R +L++NPDMLH ++LPY G R
Sbjct: 120 HGLGFGSGVSVESYTGRLSRSEKREVRGREPTVLLSNPDMLHYALLPYAG---------R 170
Query: 382 LIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVF 441
L + F + +VVIDE H+Y+G FG AL LRRL R C +GS P FV
Sbjct: 171 LWDW---------FFSSLEYVVIDEVHSYRGVFGSQVALTLRRLARTCER-FGSSPQFVC 220
Query: 442 STATSANPREHCMELA--NLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDD 499
+AT NP EH + + + L+ D S + +VLWNP + D D
Sbjct: 221 CSATINNPVEHVATVTGRDPEGIALVDEDTSGRGPRDWVLWNP----------PEYDDDW 270
Query: 500 TRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LVD 558
+ + S +E LF ++V G + +AF R+R+ E + + L E L
Sbjct: 271 AERGSGRRKSSHAESKRLFVDLVTAGAQTLAFTRARQTAEQYATDSASDLRERGERDLAG 330
Query: 559 SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLW 618
+ Y+A + RR IE D G L GV +T+ALELG+DVG +D + G+PG+ S +
Sbjct: 331 KVGAYQAALTDDRRREIEADLHAGDLRGVWSTSALELGVDVGGLDAVILDGYPGTRMSAF 390
Query: 619 QQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCA 678
Q+AGR+GR + P+L V V E LDQY M+ P F++P E D +N ++L H+ CA
Sbjct: 391 QRAGRAGRGDDPALVVMVGGEDQLDQYLMRNPADFFEAPPEDAICDPENDRILPGHVACA 450
Query: 679 ALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISI 738
A E LS DE++FG + L G L+ D + + + G P ++S+
Sbjct: 451 ADESWLS-PDDERFFGGSFPGVVADLTEEGTLNRREVADGTR--WTHAGSSS-PQQSVSL 506
Query: 739 RAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQK 798
R ++ID+ +E + + + A + GA+Y QG TY V ++L +A Q
Sbjct: 507 RTAGDREVDLIDVSRDETVASLGFADALRDAHPGAIYHQQGRTYEVANIDLDRDVAELQS 566
Query: 799 ADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSG 858
+ Y+T+ DI V NA + + TVT GF R +G
Sbjct: 567 SWADYYTRPLTEKDIVV----NADLGERELSARPDVPVRFADVTVTERITGFVRKDATTG 622
Query: 859 IIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQ-------------------------- 892
L LP+ + ++A++ VP +++ +
Sbjct: 623 ESLGESTLDLPETTLRTKALYFPVPADIESEMRALGGRMEDEDAEGTGDAEGTGDAEAST 682
Query: 893 ---------NFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYD 943
+F G+HAA H ++ + P ++ C+ +D+ P+ + +YD
Sbjct: 683 DGGETLSGGEHAFNGGIHAAEHGIISLFPFHLLCDRADVG-GISTPYHPHTEAPAVFVYD 741
Query: 944 RHPGGTGVSKQ 954
HPGG G++++
Sbjct: 742 GHPGGVGLTRR 752
>gi|448300758|ref|ZP_21490757.1| ATP-dependent helicase [Natronorubrum tibetense GA33]
gi|445585577|gb|ELY39872.1| ATP-dependent helicase [Natronorubrum tibetense GA33]
Length = 846
Score = 339 bits (869), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 255/817 (31%), Positives = 385/817 (47%), Gaps = 98/817 (11%)
Query: 205 EMVEHLRKGIGSQGQMVH--VEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAE 262
E VE LR GQ+ H VE A + +++ D + AL+ +GIS LYSHQ E
Sbjct: 9 ETVEWLRGRGYYGGQITHQLVEKGQAAETADIDVSDPV----SVALRQSGISSLYSHQVE 64
Query: 263 SIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLA 322
+I A +G+NVVVAT T+SGK+L Y +P LE + + LY+ P +AL DQ A
Sbjct: 65 AIGAVQSGENVVVATPTASGKTLTYVVPGLERAIEN-TGKTLYIAPYRALINDQADTFEA 123
Query: 323 MTK--AFDASIDIGVYDGDTTQKDRMWLRDN-ARLLITNPDMLHMSILPY-HGQFSRILS 378
ASIDIGV G+T++ R ++ + +L+T D LH+S+LPY HG+
Sbjct: 124 FDTELGLGASIDIGVQTGETSRTVRQEIKGSQPDVLLTTIDQLHLSLLPYAHGK------ 177
Query: 379 NLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPS 438
+F + VVIDE H Y+G FG H +LI RRL RLC H Y + P
Sbjct: 178 -----------NHWRWLFQQLDTVVIDEVHMYRGVFGSHASLIFRRLNRLCDH-YDASPQ 225
Query: 439 FVFSTATSANPREHCMELA--NLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTD 496
++ +AT NP EH + + +T L+ +DGS + ++ WNP ++S TD
Sbjct: 226 YICCSATIGNPVEHAATVTGQDETTFRLVDDDGSASGDRHWLFWNPPLKQDGDEDRSITD 285
Query: 497 ------------------------MD-------DTRNAANKTSSPISEVSY--------- 516
+D D++ + +S P E++
Sbjct: 286 PAVDADGTVRAGHDEHPPEQIAAAIDTAPSSTIDSQAEPDGSSEPADEITLPSHQEVVGG 345
Query: 517 -----------LFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LVDSICVYR 564
LF ++V G + + F +R+ E + ++ ++L + H L DS+ Y
Sbjct: 346 ERQSNHVESVRLFCDLVTRGYQTLVFTAARQGTEQYVDWSDKMLRDRGQHDLADSVHAYH 405
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
A + R ++E + G GV +TNALELGID+G +DV L G+PG+ S +Q+AGR+
Sbjct: 406 AALNTDRRLQLEEELRSGDARGVWSTNALELGIDIGTLDVVLLDGYPGTSMSTFQRAGRA 465
Query: 625 GRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
GR E L V V + PLDQY ++ PE+LF+S E ++ N + H+VCAA +H L
Sbjct: 466 GRGEDACLVVLVGADDPLDQYTIREPEELFESGAEQAAVNPTNDAIRPDHVVCAASDHFL 525
Query: 685 SLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESE 744
S DE YFG L S +T + L ++S +I ++ + +IRAI+
Sbjct: 526 S-PDDEDYFGPDLPSVVTDAEANDRLR---RVESGDRI-QWRATDSDVQWNTNIRAIDDR 580
Query: 745 RYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYF 804
++ID +E L +E A + A+Y HQ TY V EL+L S AL + +
Sbjct: 581 EIDLIDRNRDEQLASLEFGAAVRDAHPDAIYRHQKQTYRVVELDLESDQALLETTSTAEY 640
Query: 805 TKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTV 864
T+ + + + Y + A TV T G+ S
Sbjct: 641 TRALREKSVTI---EDTYRQSSVETHEMDAQATLGKLTVEDTVTGYLLYSNPSDDTPREC 697
Query: 865 ELYLPKYS--YESQAVWIQVPQSVKAV----VEQNFSFRSGLHAASHALLHVVPIYVRCN 918
E P S E+ V+I VP V+A+ VE + S LHA HAL+ + P+ V C+
Sbjct: 698 EFEEPLESRAIETTGVFITVPGDVEAMILDQVESQDEYLSALHAIEHALISLFPMEVLCD 757
Query: 919 FSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
D+ H + I ++D HPGG G+++Q
Sbjct: 758 RGDIGGLSTVSH-GQTTNGTIFIHDGHPGGAGLTRQA 793
>gi|116749133|ref|YP_845820.1| DEAD/DEAH box helicase [Syntrophobacter fumaroxidans MPOB]
gi|116698197|gb|ABK17385.1| DEAD/DEAH box helicase domain protein [Syntrophobacter fumaroxidans
MPOB]
Length = 973
Score = 338 bits (868), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 232/735 (31%), Positives = 366/735 (49%), Gaps = 85/735 (11%)
Query: 236 IPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL 295
+P AL + +L GIS LY+HQ E++ AG+N+VVAT TSSGKSL YNL V E L
Sbjct: 38 LPQAL----EESLTRMGISALYAHQTEALEMIRAGRNIVVATPTSSGKSLIYNLAVTEGL 93
Query: 296 SHDLSSSALYMFPTKALAQDQLRAL---LAMTKAFDASIDI--GVYDGDTTQKDRMWLRD 350
S + ALY+FP KAL++DQL L M+ A + VYDGDTT R +R
Sbjct: 94 SENHEQRALYLFPIKALSRDQLATLENFFEMSAQAGAGMRFRTAVYDGDTTPYQRTKVRQ 153
Query: 351 N-ARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHA 409
+ +L+TNPDM+H ++LP+HG++ +LR FVVIDE H
Sbjct: 154 HLPHVLLTNPDMMHYALLPFHGKWENFWKDLR-------------------FVVIDEMHT 194
Query: 410 YKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMEL--ANLSTLELIQN 467
Y+G FG H + I RRL R+C + YG+ P F+ +AT +NPR+ +L A ++++
Sbjct: 195 YRGVFGSHVSQIFRRLRRICEY-YGTHPQFILLSATISNPRQLAGQLIGAPEDDIDVVVE 253
Query: 468 DGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLR 527
+GSP A++ FV P + ++ S L A + GL+
Sbjct: 254 NGSPQAKRHFVFLEPEEIAAAPVSSSAAR--------------------LIAHAARTGLK 293
Query: 528 CIAFCRSRKLCELV-LSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCG 586
IAF RSR+L ELV +S R AP L + YRAG++ E+RR IE+ GG L
Sbjct: 294 TIAFTRSRRLTELVHMSVLR-----MAPQLRKRVSSYRAGFLPEERRIIEQKLSGGALDA 348
Query: 587 VAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYF 646
V +T+ALE+GID+G +D+ + +G+PG++ + WQ+ GR GR R S V + LDQY
Sbjct: 349 VISTSALEMGIDIGGLDLCILVGYPGTVMTTWQRGGRVGRSGRESAIVLLPQPDALDQYI 408
Query: 647 MKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKN 706
+ +P+ S E D N ++L+ HL CAA E P+ + + +
Sbjct: 409 VHHPQDFLNSGYELAVTDPMNEEILKTHLPCAAAELPI--------LQREVDADPVLTRV 460
Query: 707 RGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLE--EIEESK 764
L+ L +A +++ P T+ IR++ ++ S+ L + E +
Sbjct: 461 VSELTESARLLRAADGEQWLSAALNPHRTVDIRSVGPSYAIFMESDSDRKLPLGKNEGIR 520
Query: 765 AFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYAT 824
A + + GA+Y+H+G TY V+ L+L + ++ YFT+ + + + +A+
Sbjct: 521 ALKECHPGAIYLHRGETYQVERLDLEKRTIQVSACNVPYFTRVKSEKETEIL---EVFAS 577
Query: 825 KISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQV-P 883
K + + + VT G+ + + + + L LP ++E+ WI++ P
Sbjct: 578 KPVGNFIVRLG----RLRVTENILGYEKRKLFTQELLGSDPLDLPPQTFETVGFWIEIEP 633
Query: 884 QSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLA----PECPNPHDSRYFPERI 939
K + N F G+HA HA + + P++ C+ +D+ P P F
Sbjct: 634 LLAKNIQAANLHFMGGIHALEHAAISMFPLFALCDRNDIGGISIPLHPQIEKGAVF---- 689
Query: 940 LLYDRHPGGTGVSKQ 954
+YD +PGG G++ +
Sbjct: 690 -IYDGYPGGIGLAAR 703
>gi|55376176|ref|YP_134032.1| ATP-dependent helicase [Haloarcula marismortui ATCC 43049]
gi|55228901|gb|AAV44326.1| ATP-dependant helicase [Haloarcula marismortui ATCC 43049]
Length = 812
Score = 338 bits (866), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 231/764 (30%), Positives = 359/764 (46%), Gaps = 62/764 (8%)
Query: 218 GQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVAT 277
GQ+VH ++ ++A + ++L + K AL GI LY HQ SI A+ AG+N VVAT
Sbjct: 21 GQIVHERTVNGQEAQTDSL--SILPSVKIALSQFGIEDLYEHQISSIEATRAGENTVVAT 78
Query: 278 MTSSGKSLCYNLPVLE-ALSHDLSSSALYMFPTKALAQDQLRALLAMTKA--FDASIDIG 334
T+SGKSL Y +P LE A+ H S ALY+ P +AL DQ L AM A F +D+G
Sbjct: 79 PTASGKSLTYAVPALERAVDH--SGKALYIAPMRALINDQAGTLQAMADALGFGEQVDVG 136
Query: 335 VYDGDTTQKD-RMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVY 393
V G +++ + R + +L+ D LH+S LPY + +T
Sbjct: 137 VKTGQSSKAETRSIKQRQPDVLLATIDQLHLSFLPY----------------AHLTDHWR 180
Query: 394 LIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHC 453
+F + V+IDE H Y+G FG H ALI RRL RL H YG DP ++ +AT NP +H
Sbjct: 181 WLFQQLETVIIDEVHTYRGYFGSHAALIFRRLNRLLDH-YGKDPQYICCSATIGNPVDHA 239
Query: 454 MELANLST--LELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPI 511
+ T L+ ND S K +V WNP R + S D+D+ + + +
Sbjct: 240 AAVTGRPTDSFTLVDNDTSASGDKQWVFWNPPQKDRE--DDSTADVDEETASTQQGAGQA 297
Query: 512 SEVS--------------------YLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEE 551
E + +FA++V G + + F +R+ E + + L
Sbjct: 298 GETTATQDDSDVGGERLSQHVESVRIFADLVTRGYQTLVFTAARQGTEQYVDWADSKLRS 357
Query: 552 TAPH-LVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGF 610
H + DS+ Y A +E RR +E G + G+ +T ALELGID+G +D + G+
Sbjct: 358 RGEHDIADSVHAYHAALESERRRELEAGLKSGDIRGLWSTRALELGIDIGSLDAVILDGY 417
Query: 611 PGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKV 670
PG+ S +Q+AGR+GR + L + V + PLDQY +K PE+LF+ E ++ N
Sbjct: 418 PGTGMSTFQRAGRAGRGDDSCLVIMVGSDNPLDQYLLKEPEQLFEGGAEQAAVNPSNRSA 477
Query: 671 LEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEK 730
L +HLVCAA +H LS DE+YFG L + L G L ++ + +
Sbjct: 478 LPEHLVCAADDHYLS-PDDEQYFGEALPEMVDQLTAEGRLKR-----TNEEQVRWEAANN 531
Query: 731 MPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLS 790
IR I+ E +++D E+L +E A + A+YM+ +Y V EL+L
Sbjct: 532 DIQIQTDIRNIDEEEIKLVDRNRGEILGSLERDAALRDAHPNAIYMYDKQSYKVVELDLE 591
Query: 791 SKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGF 850
+ A + + +T+ ++ V+ + + + + K T +L T +
Sbjct: 592 ERTAYLESVETSEYTRALREKEVTVNDTLDTRTLEFDGEDM-KATLGSLTVRNQITGYLR 650
Query: 851 YRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVK----AVVEQNFSFRSGLHAASHA 906
Y R E LP + ++ + PQ ++ V+ + SGLHA HA
Sbjct: 651 YSSPRDESPSEHEFETPLPPSEIATTGLFFEAPQKIERKMLKQVDSPEQYLSGLHAIEHA 710
Query: 907 LLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTG 950
L+ + P V C+ D+ H + + ++D +PGG G
Sbjct: 711 LISLYPSEVLCDRGDIGGLSTVSH-PQTVGGTVFVHDGYPGGAG 753
>gi|429759056|ref|ZP_19291562.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 181 str. F0379]
gi|429172428|gb|EKY13996.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 181 str. F0379]
Length = 813
Score = 337 bits (865), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 231/758 (30%), Positives = 375/758 (49%), Gaps = 56/758 (7%)
Query: 215 GSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVV 274
G+QGQ V + A+ A P+ + S + +G+ + + HQ +++ A +G +VV
Sbjct: 16 GTQGQFVDYRCLPAQDAHTSPWPEWIPTPVVSTWRYSGVDEPWLHQVQALEAIHSGHDVV 75
Query: 275 VATMTSSGKSLCYNLPVLEAL-----SHDLSS-----SALYMFPTKALAQDQLRALLAMT 324
+AT T SGKSL P+L L S+ +S S LY+ PTKALA DQL +L +
Sbjct: 76 IATGTGSGKSLVAWTPILSDLVQADDSNRISDIHRRPSCLYISPTKALAADQLHSLNRLV 135
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
+ + + + DGDT ++ + W R NA +++TNPD LH +LP H ++SR L++LR
Sbjct: 136 DGLEHDVALALADGDTPREAKEWARANADIVLTNPDYLHYVMLPRHERWSRFLASLR--- 192
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
+V++DE H ++G G H +L+LRRL R+ H+ G+D + +A
Sbjct: 193 ----------------YVIVDEMHQWRGVSGSHISLVLRRLLRIARHL-GADVQVIMMSA 235
Query: 445 TSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLR----------SVLNKSQ 494
T A+P+ + ++ I +D S +W R S L ++
Sbjct: 236 TLADPQSVAQTMIGRENIDAITDDTSGRGTHHIFMWEGREVPREEDVSIDAFLSALRAAE 295
Query: 495 TDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAP 554
+ A + S +E S L A++++ R + F RSR E V + TR+ L + AP
Sbjct: 296 AGEETVLEAPTQRLSAQTEASLLCADLIRADARLLTFVRSRGGAEAVAAQTRDKLRD-AP 354
Query: 555 HLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSI 614
L ++ YR G++ E+RR +E G+L +A T+ALE+GID+ +DVT+ G+PG+
Sbjct: 355 ELASTVAAYRGGFLPEERRTLESALRSGRLRALATTSALEMGIDISGLDVTITAGWPGTR 414
Query: 615 ASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQH 674
AS WQQ GRSGR ++V +A + PLD + + + +++F SP+E +D QN VL H
Sbjct: 415 ASFWQQVGRSGRAGADGISVLIAGDNPLDSFLVHHSDEIF-SPVEAAVLDPQNPWVLRDH 473
Query: 675 LVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSH 734
L AA E PL+ FGSG + + L G L + S + P
Sbjct: 474 LCAAAAELPLAEDEAVSVFGSGAPALLAELGQEGLL-----VHRSGGWRWNVSSSDGPWE 528
Query: 735 TISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLS-SKI 793
I IR + +++D +S ++ + + A QV+ A+Y+HQG T+ V L ++I
Sbjct: 529 KIQIRGSGGD-VQIVDTRSGSIIGSVPQDSADSQVFPDAIYVHQGRTFHVLSLEEGPARI 587
Query: 794 ALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRL 853
A ++ T+ +D T + V + + +S D L + T T F RL
Sbjct: 588 AYVEEVRTPLRTRAQDATSLRVISVDEEW---VSPDSLVHWYRGTVDVTRQVTDFDLLRL 644
Query: 854 WRGSGIIFDTVELYLPKYSYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVP 912
G I +T +L +P+ + +QA W + P ++ A+ LHAA HA + ++P
Sbjct: 645 -PGLEYISNT-QLDMPERTLRTQACWYTLTPATMAAIGIDKRDVLGSLHAAEHASIALLP 702
Query: 913 IYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTG 950
+ C+ DL N H P + ++D +PGG G
Sbjct: 703 LLANCDRWDLGGLSTNLHTDTDLPT-VFVHDAYPGGAG 739
>gi|448491507|ref|ZP_21608347.1| DEAD/DEAH box helicase [Halorubrum californiensis DSM 19288]
gi|445692507|gb|ELZ44678.1| DEAD/DEAH box helicase [Halorubrum californiensis DSM 19288]
Length = 824
Score = 337 bits (864), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 235/805 (29%), Positives = 371/805 (46%), Gaps = 96/805 (11%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
+ +E LR +GQ+ + AR ++ L AL GI +LY HQA++I
Sbjct: 3 DAIEWLRDRPFYEGQIADHRRLPARDPEFADV--DLEPRLADALADRGIDRLYRHQADAI 60
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL--LA 322
A G + V+AT T+SGKSL Y +P EA + D LY+ P AL DQ +L LA
Sbjct: 61 EAVRDGDDAVLATETASGKSLAYTVPAFEA-AMDHGGRTLYIGPQNALIADQEESLSELA 119
Query: 323 MTKAFDASIDIGVYDGDTTQKDRMWLRDN-ARLLITNPDMLHMSILPYHGQFSRILSNLR 381
F + + + Y G ++ ++ +RD +L++NPDMLH ++LPY G R
Sbjct: 120 TDLGFGSRVSVDSYTGRLSRSEKRDVRDRRPTVLLSNPDMLHYALLPYAG---------R 170
Query: 382 LIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVF 441
L + F + +VVIDE H+Y+G FG AL LRRL R C +GS P FV
Sbjct: 171 LWDW---------FFSSLEYVVIDEVHSYRGVFGSQVALTLRRLARTCER-FGSSPQFVC 220
Query: 442 STATSANPREHCMELANLST--LELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDD 499
+AT NP +H + + +EL+ D S + +VLWNP + D D
Sbjct: 221 CSATINNPVDHVATVTGRDSDGIELVDEDTSGRGPRDWVLWNP----------PEYDDDW 270
Query: 500 TRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LVD 558
+ + S +E LF ++V G + +AF R+R+ E + + L E L
Sbjct: 271 QERGSGRRKSSHTESKRLFVDLVTAGQQTLAFTRARQTAEQYATDSASDLRERGERDLAG 330
Query: 559 SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLW 618
+ Y+A + RR IE D G L GV +T+ALELG+DVG +D + G+PG+ S
Sbjct: 331 KVGAYQAALTDDRRREIEADLHAGDLRGVWSTSALELGVDVGGLDAVVLDGYPGTRMSAH 390
Query: 619 QQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCA 678
Q+AGR+GR + P+L V V E LDQY M+ P F + E D +N +++ H+ CA
Sbjct: 391 QRAGRAGRGDDPALVVMVGGEDQLDQYLMRNPSDFFDALPEDAICDPENGQLMPGHVACA 450
Query: 679 ALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISI 738
A E+ LS DE++FG S + L ++G L+ +++A P ++++
Sbjct: 451 ADENWLS-PEDERFFGDSFPSVVADLTDQGVLN---RREAAAGTRWVHAGGSSPQQSVNL 506
Query: 739 RAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQK 798
R E +I+ S E + + + A + GA+Y QG TY V EL+L +A Q+
Sbjct: 507 RTAEEREISLIERSSGETVATLGFADALRDAHPGAIYHQQGRTYEVVELDLDRDVAELQQ 566
Query: 799 ADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSG 858
+ Y+T+ R D+ V+ + A D + TVT GF R +G
Sbjct: 567 SWADYYTQVRSDKDMVVNEDLDERALSARAD----VPVRFADVTVTEQITGFVRKDAATG 622
Query: 859 IIFDTVELYLPKYSYESQAVWIQVPQSV-------------------------------- 886
L LP+ + +++++ VP V
Sbjct: 623 ESLGESTLDLPETTLRTKSLYFPVPADVEREMRRLGDPLDDDDAGDPQVSADGGEVPDSE 682
Query: 887 -----------------KAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNP 929
+ + ++F G+HAA H ++ + P ++ C+ +D+ P
Sbjct: 683 SDTDDPTDDGSGPGGDGEPIPGGEYAFNGGIHAAEHGIISLFPFHLLCDRADVG-GISTP 741
Query: 930 HDSRYFPERILLYDRHPGGTGVSKQ 954
H + +YD +PGG G++++
Sbjct: 742 HHPHTEGPAVFVYDGYPGGVGLTRR 766
>gi|297566655|ref|YP_003685627.1| hypothetical protein [Meiothermus silvanus DSM 9946]
gi|296851104|gb|ADH64119.1| Protein of unknown function DUF1998 [Meiothermus silvanus DSM 9946]
Length = 797
Score = 337 bits (863), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 227/727 (31%), Positives = 350/727 (48%), Gaps = 119/727 (16%)
Query: 257 YSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQ 316
Y HQ E+ G+N+V AT T+SGKSL + +PVL+A SA+ ++PTKALA DQ
Sbjct: 95 YEHQVEAFADIQFGRNLVAATATASGKSLIFQVPVLKAALE--GQSAILLYPTKALAHDQ 152
Query: 317 LRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRI 376
L L M + I YDGDT K R R+ R+++TNPDMLH +LP H +++
Sbjct: 153 LARLRQMAVKLELESTIFPYDGDTPDKQRRLAREKGRVILTNPDMLHFGLLPLHTEWAEF 212
Query: 377 LSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSD 436
L L+ ++VIDE HAY+G FG H ALILRRL R+ H YG+
Sbjct: 213 LGKLK-------------------YLVIDELHAYRGVFGTHVALILRRLLRIARH-YGAS 252
Query: 437 PSFVFSTATSANPREHCMELANLSTLELIQNDGSPC-AQKLFVLWNPTSCLRSVLNKSQT 495
P + ++AT ANP EH NL+ Q + A++ F +W P K+
Sbjct: 253 PQIIAASATIANPAEHG---ENLTGERFAQVSAALARAEREFAVWVP---------KTLD 300
Query: 496 DMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH 555
R +AN E + L + GLR + F SR+ ELV Y
Sbjct: 301 KKGQVRRSANL------EAALLARHAAEAGLRALVFANSRRTAELVARYAG--------- 345
Query: 556 LVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIA 615
+ + YRAGY A +RRR+E G+ + +T+ALELG+D+G +D+ + LG+PGS++
Sbjct: 346 -IPEVRPYRAGYTATERRRLEASLKAGETKVLVSTSALELGVDIGELDMVVLLGYPGSLS 404
Query: 616 SLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHL 675
+ WQ+AGR+GR R +L V++ E PLD+Y+++ PE L E D N + HL
Sbjct: 405 AFWQRAGRAGRGNRRALVVWIPREDPLDEYYLERPELLLGGSPESAVADPDNPVLYPLHL 464
Query: 676 VCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHT 735
CAA E P++ E + L++G+ R Y ++ P
Sbjct: 465 HCAARELPIAPT--EAIYHPLLATGLVQKGERLY-----------------SPKRSPHRE 505
Query: 736 ISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIAL 795
+++R + + + D Q VL + E +A+++ + GAVY+H G YLV+ L+ + + +
Sbjct: 506 LTLRGM-GNTFTLKDAQGR-VLGTLGERQAYWEAHPGAVYLHMGENYLVRNLDPAQREIV 563
Query: 796 CQKADLKYFTKTRDYTDIHVSGGNNAY-----ATKISKDQLTKTTAQALACTVTTTWFGF 850
Y+T+ R TD+ V GG I ++++T + VT T
Sbjct: 564 LLPGLEDYYTQPRAETDVEVLGGEELLPGVWVGPVILRERVTGYVKKRF---VTET---- 616
Query: 851 YRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAV-------VEQNFSFR------ 897
+ + V L +P+ S++++AVW P + AV V + R
Sbjct: 617 ---------VLEEVMLTMPELSFQTEAVWFH-PLAETAVHPSPLPSVPDRITGRWPDEAG 666
Query: 898 -------SGLHAASHALLHVVPIYVRCNFSDLA----PECPNPHDSRYFPERILLYDRHP 946
S +HA H ++ ++P++V SD+ P P P S P + +YD +P
Sbjct: 667 MSEALVPSAIHALEHTMIGLLPLFVLAERSDVGGVSYPFYPRPLASGAGPT-VFIYDGYP 725
Query: 947 GGTGVSK 953
GG G ++
Sbjct: 726 GGVGYAR 732
>gi|46199197|ref|YP_004864.1| ATP-dependent helicase lhr [Thermus thermophilus HB27]
gi|55981226|ref|YP_144523.1| helicase [Thermus thermophilus HB8]
gi|46196822|gb|AAS81237.1| probable ATP-dependent helicase lhr [Thermus thermophilus HB27]
gi|55772639|dbj|BAD71080.1| putative helicase [Thermus thermophilus HB8]
Length = 728
Score = 336 bits (861), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 233/714 (32%), Positives = 358/714 (50%), Gaps = 96/714 (13%)
Query: 248 LKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMF 307
L++ G++ Y HQ ++ AG NVV+A T++GKSL Y PVL+A +++L +F
Sbjct: 50 LRALGLTP-YLHQQRALKRVEAGANVVLAYPTAAGKSLVYQAPVLQAALE--GATSLLLF 106
Query: 308 PTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSIL 367
PTKALA DQLR L AM + + YDGDT R R+ +L++NPDMLH +L
Sbjct: 107 PTKALAHDQLRRLRAMAQVLGVE-GVFPYDGDTPSATRRQARERGLVLLSNPDMLHYGLL 165
Query: 368 PYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCR 427
P H ++ L+ LR +VV+DE HAY+G FG H ALILRRL R
Sbjct: 166 PRHPDWAPFLARLR-------------------YVVLDELHAYRGVFGTHVALILRRLLR 206
Query: 428 LCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLR 487
L H YG+ P + ++AT AN REH L L EL + L +L P
Sbjct: 207 LARH-YGASPQVLAASATIANAREHAEALTGLPFEELKAQVARTERELLVLLPKPL---- 261
Query: 488 SVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTRE 547
D R + SP+ E +YL + + GL+ + F +RK EL+ Y
Sbjct: 262 -----------DRRG--ERRRSPLLEAAYLARRLAEAGLKGLVFAGARKSAELIARYAAH 308
Query: 548 ILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLH 607
L + YRAGY A +RRR+E D G++ + +T+ALELG+D+G +D +
Sbjct: 309 PL----------VRPYRAGYTARERRRLEADLKEGRVRVLVSTSALELGVDIGELDAVVL 358
Query: 608 LGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQN 667
+G+PGS A+ WQ+AGR+GR ER +L VY+ E P+D+YF+ P L +SP E D QN
Sbjct: 359 VGYPGSTAAFWQRAGRAGRGERRALLVYIPREDPMDEYFLHRPALLLESPPEEAVADPQN 418
Query: 668 HKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIG 727
+ HL AA E PL L+ + + R L + + + F
Sbjct: 419 PVLCPLHLHAAAREKPL------------LAEELLCPEARATLK-----ERNGRFFT--- 458
Query: 728 HEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKEL 787
++ P I++R + + + EVL ++E +A+++ + GA+Y+HQG +YLV+ +
Sbjct: 459 PKRNPHREITLRGLGATF--TLRGPDGEVLGYLDERQAYWEAHPGAIYLHQGESYLVRNV 516
Query: 788 NLSSKIALCQKADLKYFTKTRDYTDIHV-SGGNNAYATKISKDQLTKTTAQALACTVTTT 846
+L+ + A Y+T+ R TD+ V SG + + L + V
Sbjct: 517 DLARREVWLLPALEDYYTEPRAETDLEVLSGEEVGPGVWVGRVVLRER-------VVGYV 569
Query: 847 WFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHA 906
FY +G + + V L +P+ S+ ++A+W P++V A F G+HA HA
Sbjct: 570 KKRFY-----TGSVLEEVPLEMPEVSFPTEALWFHPPEAVPA-----FQIPGGIHALEHA 619
Query: 907 LLHVVPIYVRCNFSDLA----PECPNPHDSRYFPERILLYDRHPGGTGVSKQVT 956
++ ++P++V D+ P P P S P + +YD +PGG G +++
Sbjct: 620 MIGLLPLFVLAERQDVGGISYPFYPRPLPSPGGPT-VFIYDGYPGGVGYARRAA 672
>gi|448474039|ref|ZP_21602007.1| DEAD/DEAH box helicase [Halorubrum aidingense JCM 13560]
gi|445818319|gb|EMA68178.1| DEAD/DEAH box helicase [Halorubrum aidingense JCM 13560]
Length = 813
Score = 335 bits (860), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 235/798 (29%), Positives = 369/798 (46%), Gaps = 86/798 (10%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
+ +E LR +GQ+ + AR+ V +I L AL GI +LY HQA +I
Sbjct: 3 DAIEWLRDRPFYEGQIAEHRRLPAREPVYADID--LAPRMADALSKRGIDRLYRHQAAAI 60
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL--LA 322
A G +VV+AT T+SGKSL Y +P EA + D LY+ P AL DQ +L LA
Sbjct: 61 EAVRGGDDVVLATETASGKSLAYAVPAFEA-AMDHGGRTLYLGPQNALIADQEESLSELA 119
Query: 323 MTKAFDASIDIGVYDGDTTQKDRMWLRD-NARLLITNPDMLHMSILPYHGQFSRILSNLR 381
F + + + Y G ++ ++ +RD +L++NPDMLH ++LP+ G R
Sbjct: 120 RGLGFGSRVSVASYTGRLSRSEKRDVRDREPTVLLSNPDMLHYALLPHAG---------R 170
Query: 382 LIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVF 441
L + F + +VVIDE H+Y+G FG A+ LRRL R C +GS P FV
Sbjct: 171 LWEW---------FFSSLEYVVIDEVHSYRGVFGSQVAMTLRRLARTCER-FGSTPRFVC 220
Query: 442 STATSANPREHCMELA--NLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDD 499
+AT NP +H + + + L+ D S + +VLWNP + D D
Sbjct: 221 CSATINNPVDHVAAVTGRDPDGIALVDEDASGRGPRDWVLWNP----------PEYDDDW 270
Query: 500 TRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAP-HLVD 558
+ + S +E LF ++V G + +AF R+R+ E + + L E L
Sbjct: 271 QERGSGRRKSSHTESKRLFVDLVAAGAQTLAFTRARQTAEQYATDSASDLRERGERELAG 330
Query: 559 SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLW 618
++ Y+A + RR IE G L GV +T+ALELG+DVG +D + G+PG+ S +
Sbjct: 331 AVGAYQAALKDDRRREIESALHAGDLRGVWSTSALELGVDVGGLDAVILDGYPGTRMSAY 390
Query: 619 QQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCA 678
Q+AGR+GR + P+L V V E LDQY M P F++P E D N ++L +H+ CA
Sbjct: 391 QRAGRAGRGDDPALVVMVGGEDQLDQYLMNNPADFFEAPPEDAICDPANDELLPRHVACA 450
Query: 679 ALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISI 738
A E LS DE YF + L G L D+++ I P +++
Sbjct: 451 ADERWLSPA-DETYFDETFPGIVGDLTAEGVLD---RRDTASGIRWVHAGSASPQQAVNL 506
Query: 739 RAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQK 798
R + ++ID E + + + A + GA+Y QG TY V +L+L +A Q
Sbjct: 507 RTADDREIDLIDSSRGETVASLGFADALRDAHPGAIYHQQGRTYEVTDLDLDRDVAELQS 566
Query: 799 ADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSG 858
+ Y+T+T DI V+ + A ++S + TVT GF R +G
Sbjct: 567 SWADYYTRTLSEKDIVVN--EDLAARELSA--RPDVPVRFADVTVTEQITGFVRKDAATG 622
Query: 859 IIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQ-------------------------- 892
L LP+ + ++A++ VP +++ +
Sbjct: 623 ESLGESTLDLPETTLRTKALYFPVPADIESEMRAIGGRERAGDDAAGDDAAGAAEDADSE 682
Query: 893 -------------NFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERI 939
+F G+HAA H ++ + P ++ C+ +D+ P+ +
Sbjct: 683 DANSEDADSGAGGEHAFNGGIHAAEHGIISLFPFHLLCDRADVG-GISTPYHPHTDAPAV 741
Query: 940 LLYDRHPGGTGVSKQVTD 957
+YD +PGG G++++ D
Sbjct: 742 FVYDGYPGGVGLTRRGHD 759
>gi|386360235|ref|YP_006058480.1| helicase family protein with metal-binding cysteine cluster
[Thermus thermophilus JL-18]
gi|383509262|gb|AFH38694.1| helicase family protein with metal-binding cysteine cluster
[Thermus thermophilus JL-18]
Length = 728
Score = 335 bits (860), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 236/717 (32%), Positives = 359/717 (50%), Gaps = 102/717 (14%)
Query: 248 LKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMF 307
L++ G++ Y HQ ++ AG NVV+A T++GKSL Y PVL+A +++L +F
Sbjct: 50 LQALGLTP-YLHQQRALKRVEAGANVVLAYPTAAGKSLVYQAPVLQAALE--GATSLLLF 106
Query: 308 PTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSIL 367
PTKALA DQLR L AM + + YDGDT R R+ +L++NPDMLH +L
Sbjct: 107 PTKALAHDQLRRLRAMAQVLGVE-GLFPYDGDTPSATRRQARERGLVLLSNPDMLHYGLL 165
Query: 368 PYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCR 427
P H ++ L+ LR +VV+DE HAY+G FG H ALILRRL R
Sbjct: 166 PRHPDWAPFLARLR-------------------YVVLDELHAYRGVFGTHVALILRRLLR 206
Query: 428 LCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLR 487
L H YG+ P + ++AT AN REH L L EL + L +L P
Sbjct: 207 LARH-YGASPQVLAASATIANAREHAEALTGLPFEELKAQVARTERELLVLLPKPL---- 261
Query: 488 SVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTRE 547
D R + SP+ E +YL + + GL+ + F +R+ EL+ Y
Sbjct: 262 -----------DRRG--ERRRSPLLEAAYLARRLAEAGLKGLVFAGARRSAELIARYAAH 308
Query: 548 ILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLH 607
L + YRAGY A +RRR+E D G++ + +T+ALELG+D+G +D +
Sbjct: 309 PL----------VRPYRAGYTARERRRLEADLKEGRVRVLVSTSALELGVDIGELDAVVL 358
Query: 608 LGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQN 667
+G+PGS A+ WQ+AGR+GR ER +L VY+ E P+D+YF+ P L +SP E D QN
Sbjct: 359 VGYPGSTAAFWQRAGRAGRGERRALLVYIPREDPMDEYFLHRPALLLESPPEEAVADPQN 418
Query: 668 HKVLEQHLVCAALEHPLS---LIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFE 724
+ HL AA E PLS L+ E TLK R + + F
Sbjct: 419 PVLCPLHLHAAAREKPLSAEELLCPEAR---------ATLKER-----------NGRFFT 458
Query: 725 YIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLV 784
++ P I++R + + + EVL ++E +A+++ + GA+Y+HQG +YLV
Sbjct: 459 ---PKRNPHREITLRGLGATF--TLRGPDGEVLGYLDERQAYWEAHPGAIYLHQGESYLV 513
Query: 785 KELNLSSKIALCQKADLKYFTKTRDYTDIHV-SGGNNAYATKISKDQLTKTTAQALACTV 843
+ ++L+ + A Y+T+ R TD+ V SG + + L + V
Sbjct: 514 RNVDLARREVWLLPALEDYYTEPRAETDLEVLSGEEVGPGVWVGRVVLRER-------VV 566
Query: 844 TTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAA 903
FY +G + + V L +P+ S+ ++A+W P++V A F G+HA
Sbjct: 567 GYVKKRFY-----TGSVLEEVPLEMPEVSFPTEALWFHPPEAVPA-----FQIPGGIHAL 616
Query: 904 SHALLHVVPIYVRCNFSDLA----PECPNPHDSRYFPERILLYDRHPGGTGVSKQVT 956
HA++ ++P++V D+ P P P S P + +YD +PGG G +++
Sbjct: 617 EHAMIGLLPLFVLAERQDVGGISYPFYPRPLPSPGGPT-VFIYDGYPGGVGYARRAA 672
>gi|334335932|ref|YP_004541084.1| helicase/secretion neighborhood DEAH-box helicase [Isoptericola
variabilis 225]
gi|334106300|gb|AEG43190.1| helicase/secretion neighborhood putative DEAH-box helicase
[Isoptericola variabilis 225]
Length = 872
Score = 335 bits (859), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 243/806 (30%), Positives = 372/806 (46%), Gaps = 98/806 (12%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATM 278
++ HV AR + P + +A ++ G+ + + HQ E+ A+ G++V +AT
Sbjct: 30 RLTHVRTFPARTGETADWPAWADPSVVAAYRALGVERPWVHQVEAADAAWHGRHVALATS 89
Query: 279 TSSGKSLCYNLPVLEALSHDLSS---------------SALYMFPTKALAQDQL----RA 319
T SGKSL + LP L A+ D+++ S LY+ PTKALA DQL R
Sbjct: 90 TGSGKSLAFWLPALTAVRGDVAAGTLDPGRIESTTTRGSVLYLSPTKALAADQLAALERL 149
Query: 320 LLAMTKAFDAS------IDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQF 373
L A+ + A+ + + DGDT ++R W++++A +++TNPD LH S+LP H ++
Sbjct: 150 LDAVPGSGGAAPSARGRVRVSTCDGDTPTEERRWVQEHADVVLTNPDFLHFSLLPNHRRW 209
Query: 374 SRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHV- 432
+R L LR +VV+DE HAY+G FG H +L+LRRL RL +H
Sbjct: 210 ARFLRGLR-------------------YVVVDEGHAYRGVFGAHVSLVLRRLTRLAAHYR 250
Query: 433 ----------YGSDPSFVFSTATSANPREHCMELANLSTLEL--IQNDGSPCAQKLFVLW 480
GSD FV ++AT+A P L + ++ + D SP ++ LW
Sbjct: 251 VSETQWAQAHQGSDIVFVVASATTAQPAASAARLLGVRPDDVTAVTRDTSPAGRRTVALW 310
Query: 481 NPTSCLRSVLNKSQTDMDDTRNAANKTSSPIS--------EVSYLFAE--MVQH------ 524
P +++ D +A + + P E + E +H
Sbjct: 311 LPPEIGTYGFERTKASPDGPDHADDPWALPDPLDADHTERETEPVVTERAAAEHPRRSAT 370
Query: 525 -------------GLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAED 571
G R +AF RSR+ E V R+ L + L + YR GY+ E+
Sbjct: 371 AEAADLLADLAAAGARTLAFTRSRRGAESVAQQARDHLRPVSTELSRRVAAYRGGYLPEE 430
Query: 572 RRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPS 631
RR +E G L G+A TNALELG+D+ +D L G+PG+ SLWQQAGR+GR
Sbjct: 431 RRELEHALRTGALLGLATTNALELGVDISGLDAVLIAGWPGTRMSLWQQAGRAGRAGADG 490
Query: 632 LAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEK 691
L +VA E PLD Y + +PE +F +P+E D N VL L AA E PL D
Sbjct: 491 LVAFVAREDPLDTYLVTHPEAVFDAPLEATVFDPANPYVLAPQLCAAAQEVPLR-AEDLP 549
Query: 692 YFGSG--LSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVI 749
FG + + L RG L PS Y H + S +R + V+
Sbjct: 550 AFGDPERVREVLDVLVARGLLRRRPS-------GWYWTHAQPASGMADLRGSGGQPVRVV 602
Query: 750 DMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRD 809
+ + +L ++ A QV++GAVY HQG TY+V L+L+ ++AL + D+ + T +R+
Sbjct: 603 EATTGRLLGTVDAGSADGQVHDGAVYTHQGVTYVVDHLDLTDRVALVVRRDVDHGTWSRE 662
Query: 810 YTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLP 869
+I + + + + + T VT+ F R + T L LP
Sbjct: 663 VMEIAIDEHAPEGSRPVVEREWGPVTWGLGPVEVTSQVVSFQRRRIPDMQVLGTEALDLP 722
Query: 870 KYSYESQAVWIQVPQSV-KAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPN 928
+ + AVW VP V +A LHAA HA + ++P+ C+ DL
Sbjct: 723 SRTLSTTAVWWSVPDFVLRAAGVSPEEAPGALHAAEHASIGLLPLLATCDRWDLGGVSTE 782
Query: 929 PHDSRYFPERILLYDRHPGGTGVSKQ 954
H + + +YD +PGG G +++
Sbjct: 783 LH-ADTGQATVFVYDAYPGGAGFAER 807
>gi|153855427|ref|ZP_01996558.1| hypothetical protein DORLON_02572 [Dorea longicatena DSM 13814]
gi|149752081|gb|EDM62012.1| DEAD/DEAH box helicase [Dorea longicatena DSM 13814]
Length = 900
Score = 335 bits (858), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 220/680 (32%), Positives = 343/680 (50%), Gaps = 59/680 (8%)
Query: 219 QMVHVEDISA-------RKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGK 271
+ + +ED++A RKA E PD + D K L GI+ LY HQ E + G+
Sbjct: 5 EKMSIEDMTAYMRIVPERKASYAEFPDTMNDEIKEYLGKQGINALYMHQTEMFEKAGRGE 64
Query: 272 NVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAF-DAS 330
N V+ T T+SGK+L + +PVL+ + D + A++++PTKALA DQ R+L + + F +
Sbjct: 65 NTVITTSTASGKTLAFLIPVLQKILEDPLTRAIFVYPTKALASDQYRSLQPVLEYFGEGK 124
Query: 331 IDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTT 390
I GVYDGDT +R +R +A +++TNP+ML+ + LP H ++ F
Sbjct: 125 IQAGVYDGDTMPAERSRIRKSANIILTNPEMLNSAFLPNHSKY----------GFDF--- 171
Query: 391 EVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPR 450
IF +R++VIDE H+Y+GAFG H A I RR+ R+C + Y S P F+ S+AT ANP
Sbjct: 172 ----IFANLRYIVIDELHSYRGAFGAHLANIFRRMHRICQY-YHSSPQFLCSSATIANPV 226
Query: 451 EHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSP 510
E ++ + LI+ DGSP + + + P K D R AA+ ++
Sbjct: 227 ELAKKVCG-TAFSLIEKDGSPSPVREYRIIQPPEI------KGHNDKVYGRYAASTVAAD 279
Query: 511 ISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETA-PHLVDS--ICVYRAGY 567
+ ++V+ IAF +SR+ E++L R+ L+ DS I YR GY
Sbjct: 280 ------MLPDLVKEQRHFIAFGKSRRTVEVILKEARDKLDAAGFLSQADSRKIAGYRGGY 333
Query: 568 VAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRR 627
+R+ IER G+L G+ +TNALELGID+G +D T+ +G+PG+ AS WQQ+GR+GR
Sbjct: 334 TPLERKEIERKMMSGELNGLVSTNALELGIDIGSLDTTVIVGYPGTRASFWQQSGRAGRN 393
Query: 628 ERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLI 687
+ + + P DQY P LF+ E +D N + H+ AA E PLSL
Sbjct: 394 GQTCVNYLILENQPFDQYIAVEPGWLFEGKSENAIVDPDNLLIELAHIRAAAAELPLSL- 452
Query: 688 YDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYE 747
D+ L I L + S A F + G P+ S+R ++ R++
Sbjct: 453 -DDAALFPSLGEIIPVLMKA------EEVKSMAGRFAWSG-PAFPAGDYSLRNMDKTRFK 504
Query: 748 VIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKT 807
+I N + E++ES+A+ +++ GAVYMH G Y V +L+L S+ A + + Y+T
Sbjct: 505 LILDNENREITEMDESQAYHELHPGAVYMHDGALYEVLKLDLVSRTATAKSFEGNYYTVP 564
Query: 808 RDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELY 867
DI + + + +T V F +L + V L
Sbjct: 565 AGTEDIRI-------LQTFQEKTVERTKIHFGDINVDEVISMFKKLQFHNHQNLGYVSLT 617
Query: 868 LP-KYSYESQAVWIQVPQSV 886
P + Y++++ WI +P+ V
Sbjct: 618 QPLQKDYDTESTWIDIPEDV 637
>gi|403717600|ref|ZP_10942779.1| putative ATP-dependent helicase [Kineosphaera limosa NBRC 100340]
gi|403209076|dbj|GAB97462.1| putative ATP-dependent helicase [Kineosphaera limosa NBRC 100340]
Length = 771
Score = 335 bits (858), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 237/767 (30%), Positives = 372/767 (48%), Gaps = 76/767 (9%)
Query: 204 LEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAES 263
L EH R + HV + AR+A + P + + L G+++L+SHQA++
Sbjct: 17 LRRAEHAR--------LAHVARLPAREARFAQYPAWVDGQLRGELTERGVARLWSHQAQA 68
Query: 264 IMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSS-----SALYMFPTKALAQDQLR 318
A G++VV+ T T+SGKSL Y LPVL ++ S +ALY+ PTKAL DQ +
Sbjct: 69 AQALHEGRHVVLTTGTASGKSLAYLLPVLTDIAAAQQSCAGRATALYLSPTKALGADQAQ 128
Query: 319 ALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILS 378
+ A+ + + + YDGDT +R W+R +A L++TNPDMLH +LP H ++
Sbjct: 129 HIEALGLSH---VRVATYDGDTPSDERRWIRRHAGLVLTNPDMLHAGMLPAHEAWASFWR 185
Query: 379 NLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPS 438
LR +VV+DE H Y+G FG H A +LRRL R+ ++ YG+ P+
Sbjct: 186 GLR-------------------YVVVDECHVYRGVFGAHVAAVLRRLRRVAAY-YGAAPT 225
Query: 439 FVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMD 498
F ++AT A H L L ++ I +DGSP A +P +
Sbjct: 226 FALASATIAESGAHAQRLTGLP-VQPITDDGSPRAAMTVAFVDPRTA------------- 271
Query: 499 DTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVD 558
AA++ S ++ L A++V G++ +AF RSR E+V LE L
Sbjct: 272 -AGPAADEPVSALTRAGDLLADLVGRGVQTVAFARSRLGVEVVADRATHRLESLDLGLAS 330
Query: 559 SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLW 618
S+ YR GY+ E+RR +E G+L G+AAT+ALELGID+ +D + G+PG+ ++LW
Sbjct: 331 SVAAYRGGYLPEERRDLEARLRDGRLRGLAATSALELGIDISGLDAVVLAGWPGTRSALW 390
Query: 619 QQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCA 678
Q+AGR+GR R SLAV +A + PLD + + +P+ + + E C +D QN VL HL A
Sbjct: 391 QRAGRAGRSGRESLAVLIASDDPLDHFLVGHPQAVLGAGSEGCGMDPQNPYVLLPHLAAA 450
Query: 679 ALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFE---YIGHEKMPSHT 735
A E L+ DE YFG + G L+ + + Y ++ +
Sbjct: 451 AAEVALTPA-DEAYFGPQV----------GPLAQELVRRGLLRARRGGWYWTRQERATDL 499
Query: 736 ISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIAL 795
+R S E+++ S VL ++ +A V+ GAVY+HQ Y+V +L+L AL
Sbjct: 500 TGLRGAGST-VEIVESLSGRVLGTVDVPRADAVVHTGAVYVHQQRPYVVTDLDLVGGTAL 558
Query: 796 CQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWR 855
+ D + T+ R + G +S T TV F R
Sbjct: 559 VARGDPGWRTQARSVGAFDIVG-------VLSSRAAGPVTVAHGHVTVRQQVTSFLRR-A 610
Query: 856 GSGIIFDTVELYLPKYSYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIY 914
G + L LP+ ++A W + P+++ AV + HAA HA + ++P+
Sbjct: 611 PDGSVLGEHPLQLPERQLPTRATWWTITPEALAAVGVAQAAVPGAAHAAEHAAIGLLPLV 670
Query: 915 VRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDMKMN 961
+ + D+ H P +L+YD H GG G++++ + + +
Sbjct: 671 AQADRWDIGGVSTALHPDTGLPT-VLIYDGHAGGAGIAERGFEQRQD 716
>gi|384431441|ref|YP_005640801.1| hypothetical protein [Thermus thermophilus SG0.5JP17-16]
gi|333966909|gb|AEG33674.1| Protein of unknown function DUF1998 [Thermus thermophilus
SG0.5JP17-16]
Length = 728
Score = 334 bits (857), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 230/714 (32%), Positives = 356/714 (49%), Gaps = 96/714 (13%)
Query: 248 LKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMF 307
L++ G++ Y HQ ++ AG NVV+A T++GKSL Y PVL+A +++L +F
Sbjct: 50 LRALGLTP-YLHQQRALKRVEAGANVVLAYPTAAGKSLVYQAPVLQAALE--GATSLLLF 106
Query: 308 PTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSIL 367
PTKALA DQLR L AM + + YDGDT R R+ +L++NPDMLH +L
Sbjct: 107 PTKALAHDQLRRLRAMAQVLGVE-GVFPYDGDTPSATRRQARERGLVLLSNPDMLHYGLL 165
Query: 368 PYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCR 427
P H ++ L+ LR +VV+DE HAY+G FG H ALILRRL R
Sbjct: 166 PRHPDWAPFLARLR-------------------YVVLDELHAYRGVFGTHVALILRRLLR 206
Query: 428 LCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLR 487
L H YG+ P + ++AT AN REH L L EL + L +L P
Sbjct: 207 LARH-YGASPQVLAASATIANAREHAEALTGLPFEELKAQVARTERELLVLLPKPLD--- 262
Query: 488 SVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTRE 547
+ SP+ E +YL + + GL+ + F +R+ EL+ Y
Sbjct: 263 --------------RKGERRRSPLLEAAYLARRLAEAGLKGLVFAGARRSAELIARYAAH 308
Query: 548 ILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLH 607
L + YRAGY A +RRR+E D G++ + +T+ALELG+D+G +D +
Sbjct: 309 PL----------VRPYRAGYTARERRRLEADLKEGRVRVLVSTSALELGVDIGELDAVVL 358
Query: 608 LGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQN 667
+G+PGS A+ WQ+AGR+GR ER +L VY+ E P+D+YF+ P L +SP E D QN
Sbjct: 359 VGYPGSTAAFWQRAGRAGRGERRALLVYIPREDPMDEYFLHRPALLLESPPEEAVADPQN 418
Query: 668 HKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIG 727
+ HL AA E PL L+ + + R L + + + F
Sbjct: 419 PVLCPLHLHAAAREKPL------------LAEELLCPEARATLK-----ERNGRFFT--- 458
Query: 728 HEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKEL 787
++ P I++R + + + EVL ++E +A+++ + GA+Y+HQG +YLV+ +
Sbjct: 459 PKRNPHREITLRGLGATF--TLRGPDGEVLGYLDERQAYWEAHPGAIYLHQGESYLVRNV 516
Query: 788 NLSSKIALCQKADLKYFTKTRDYTDIHV-SGGNNAYATKISKDQLTKTTAQALACTVTTT 846
+L+ + A Y+T+ R TD+ V SG + + L + V
Sbjct: 517 DLARREVWLLPALEDYYTEPRAETDLEVLSGEEVGPGVWVGRVVLRER-------VVGYV 569
Query: 847 WFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHA 906
FY +G + + V L +P+ S+ ++A+W P++V A F G+HA HA
Sbjct: 570 KKRFY-----TGSVLEEVPLEMPEVSFPTEALWFHPPEAVPA-----FQIPGGIHALEHA 619
Query: 907 LLHVVPIYVRCNFSDLA----PECPNPHDSRYFPERILLYDRHPGGTGVSKQVT 956
++ ++P++V D+ P P P S P + +YD +PGG G +++
Sbjct: 620 MIGLLPLFVLAERQDVGGISYPFYPRPLPSPGGPT-VFIYDGYPGGVGYARRAA 672
>gi|317123692|ref|YP_004097804.1| DEAD/DEAH box helicase [Intrasporangium calvum DSM 43043]
gi|315587780|gb|ADU47077.1| DEAD/DEAH box helicase domain protein [Intrasporangium calvum DSM
43043]
Length = 665
Score = 334 bits (856), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 230/672 (34%), Positives = 339/672 (50%), Gaps = 73/672 (10%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATM 278
+++HV ++ AR A E P + AL +GI + + HQ E A+ G +VVV+T
Sbjct: 41 RLLHVHEVPARPARHAEWPGWVDPTLLGALLGSGIDRPWRHQVEVAEAAHRGDHVVVSTG 100
Query: 279 TSSGKSLCYNLPVLEAL------SHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASID 332
T+SGKSL Y LP+L + S+ALY+ PTKALA DQL + T+ +
Sbjct: 101 TASGKSLGYLLPLLTDVVTGARAPSGRGSTALYLAPTKALAADQLDRI---TRLALPPVR 157
Query: 333 IGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEV 392
YDGDT +R W+RD+A +++TNPD++H S+LP H +++ L LR
Sbjct: 158 AATYDGDTPTDERRWIRDHANVVLTNPDLVHHSLLPRHDRWAPFLRALR----------- 206
Query: 393 YLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREH 452
+VV+DE H YKG FG H A +LRRL R+ + Y + P+FVF++AT A+P H
Sbjct: 207 --------YVVVDECHVYKGVFGAHLAAVLRRLRRVAA-RYHASPTFVFASATVADPSVH 257
Query: 453 CMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPIS 512
L + L + DGSP A F LW P +TD D R K S ++
Sbjct: 258 ASRLLGMP-LSSVTEDGSPRAPMTFALWEP---------PVRTD-DQGRP---KRVSTLT 303
Query: 513 EVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDR 572
E L A+ V+ ++ F RSR E+V + R+ + T I YR GY+ E+R
Sbjct: 304 ETGDLLAQCVEEDVQTAVFARSRAGVEVVANVARDRVSTTR---EARIAAYRGGYLPEER 360
Query: 573 RRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSL 632
R +ER +L G+AATNALELG+DV +D + G+PG++ASLWQQAGR+GR SL
Sbjct: 361 RELERALRSRRLVGIAATNALELGVDVSGLDAVVLAGWPGTLASLWQQAGRAGRTGHRSL 420
Query: 633 AVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKY 692
A+ VA + PLD + + +PE +F +E +D N VL HL AA E PL+ D +
Sbjct: 421 AILVAADDPLDTFVVHHPESIFGRAVEATVVDPDNPYVLGPHLAAAAAELPLTE-GDLEL 479
Query: 693 FGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQ 752
FG + L +G L P + E P+ +S+R E +++ +
Sbjct: 480 FGPQTRPLLDALVAKGILKKRPR-------GWFWTREDRPADHVSLRGA-GEPVRIVETR 531
Query: 753 SNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTD 812
+ V+ ++E+ A QV+ GAV++HQG T++V EL+L A + D + T + ++
Sbjct: 532 TGRVVATVDEASAHAQVHTGAVHLHQGQTWVVTELDLDDGAAFAVRGDPGWTTHAQSVSE 591
Query: 813 IHVSGGNNAYATKISKDQLTKTTAQALAC-----TVTTTWFGFYRLWRGSGIIFDTVELY 867
+ +L L C TVT F R G G + L
Sbjct: 592 FTIV------------RELEAVEWGPLRCSFGQVTVTHQVVSFLRRLPG-GEVLGEHPLD 638
Query: 868 LPKYSYESQAVW 879
LP S ++A+W
Sbjct: 639 LPPRSLATKAMW 650
>gi|291287138|ref|YP_003503954.1| DEAD/DEAH box helicase [Denitrovibrio acetiphilus DSM 12809]
gi|290884298|gb|ADD67998.1| DEAD/DEAH box helicase domain protein [Denitrovibrio acetiphilus
DSM 12809]
Length = 938
Score = 334 bits (856), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 222/776 (28%), Positives = 375/776 (48%), Gaps = 116/776 (14%)
Query: 205 EMVEHLRKG-IGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAES 263
++V H++ +G HV S +KA L + + ++ +GI L++HQ+E+
Sbjct: 6 KIVSHIKNSKVGGSIAFEHV--FSEKKADLCGLDIIESQIIRDSVADSGIPSLFTHQSEA 63
Query: 264 IMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL--L 321
+G++V++ T TSSGK+LCYNLP++E + H+ + +ALY+FP KAL +DQ+R L
Sbjct: 64 YQQVKSGRDVLITTPTSSGKTLCYNLPIIEDMYHNRNVTALYLFPLKALGRDQMRHLENF 123
Query: 322 AMTKAFDASIDIGVYDGDTTQKDRMWL-RDNARLLITNPDMLHMSILPYHGQFSRILSNL 380
I + V DGDT +K R + +D ++ +NPD+LH ++LP +++ L+NL
Sbjct: 124 LTNIPLGEGIGLAVVDGDTDKKVRRKIQKDRPNIIFSNPDILHYAVLPKRNEWADFLNNL 183
Query: 381 RLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFV 440
+ ++V+DE H Y+G FG H + R RL HV +
Sbjct: 184 K-------------------YIVVDELHTYRGIFGNHVYNLFARFMRLYPHV-----QII 219
Query: 441 FSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDT 500
+AT NP+E + + + G+P +K F+L N + S+ N
Sbjct: 220 SCSATIGNPKEFADTMFSRDFYH-VSKSGAPSGKKHFLLINSDLPVVSISN--------- 269
Query: 501 RNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSI 560
YL ++ GL+ I F +SRK E + + L P ++
Sbjct: 270 ---------------YLLKTNLEAGLKTICFTKSRKQTERIFAN----LLAADPGYGKTV 310
Query: 561 CVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQ 620
YRAG++ E+RR IE D G+L V +T+A ELGID+G +D T+ G+PGS+ SLWQ+
Sbjct: 311 SSYRAGFLPEERREIEADLAEGRLKAVISTSAFELGIDIGGVDCTVLAGYPGSLMSLWQR 370
Query: 621 AGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAAL 680
AGRSGRR SL + +A LDQY++K+PEKL+ + E ID N V H+ CAA
Sbjct: 371 AGRSGRRGEDSLVIMIAGFDALDQYYVKHPEKLYDAAFENVVIDTGNEIVNTAHIRCAAY 430
Query: 681 EHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRA 740
E P+ E+YF LK+R + EKM +I +
Sbjct: 431 EKPIEET--EEYF----------LKHRAVI------------------EKMVMDSIIFKD 460
Query: 741 IESERYEV--------IDMQ----------SNEVLEEIEESKAFFQVYEGAVYMHQGHTY 782
E+ERY +D++ + ++ +A+ + ++GAVYMH+G+++
Sbjct: 461 EENERYFTLVRYPYGDVDLRMAGDNYNIYCGDTLIATASGRRAYMENFKGAVYMHRGNSF 520
Query: 783 LVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACT 842
+++ ++ S K ++K T +Y + + N S+ + + +
Sbjct: 521 IIRNVDRSKK-------NIKTEPFTGNYYTMPTTDKNTMVEATFSRKEQSGMASAFCGLK 573
Query: 843 VTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSV-KAVVEQNFSFRSGLH 901
VT GF ++ +G VEL + ++ +++ VP S+ K +++ F +H
Sbjct: 574 VTEQLTGFQQISSRTGEKIADVELEESPIQFSTKGMYVLVPDSIRKLILDAELDFMGAIH 633
Query: 902 AASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTD 957
A HA++ VVP + + D+ P+ + + +YD +PGG G++++V D
Sbjct: 634 AFEHAMISVVPTFYLASRDDIGG-ISYPYHPQLGGAAVFMYDAYPGGIGINERVYD 688
>gi|417932603|ref|ZP_12575941.1| DEAH-box helicase [Propionibacterium acnes SK182B-JCVI]
gi|340774239|gb|EGR96726.1| DEAH-box helicase [Propionibacterium acnes SK182B-JCVI]
Length = 766
Score = 334 bits (856), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 222/732 (30%), Positives = 361/732 (49%), Gaps = 100/732 (13%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATM 278
Q+V+++ A E P ++ + A+++ GI +L+ HQA+ + AG++ + T
Sbjct: 21 QVVYLDHREAAAGRTCEWPPWFPEDCRQAVEAAGIHRLWEHQAQFAELAKAGRHAAICTA 80
Query: 279 TSSGKSLCYNLPVL-----------EALSHDLSSS---------ALYMFPTKALAQDQLR 318
T+SGK+L Y LP++ E + DL +S ALY+ PTKALA DQ R
Sbjct: 81 TASGKTLAYLLPIMAATASAAPVLPEPPTPDLPASLRDRLHRNSALYLAPTKALAHDQER 140
Query: 319 ALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILS 378
+ + DGD+ +R + R+ AR ++TNPDMLH ++LP H +++ +L
Sbjct: 141 VCREVGPK---DWLVSTLDGDSDDAERRFAREQARYVLTNPDMLHRTVLPSHSRWASLLG 197
Query: 379 NLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPS 438
+LR +VVIDEAH Y+G FG H A ++RRL RLC ++G+DP
Sbjct: 198 SLR-------------------YVVIDEAHRYRGVFGAHVAQVIRRLRRLC-RMHGADPV 237
Query: 439 FVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMD 498
FV S+ATS N E L + +E++ D SP +LW P SV N
Sbjct: 238 FVLSSATSTNAAEAGARLLGVEKVEVVDEDCSPHPGHDVILWQPAE---SVSN------- 287
Query: 499 DTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVD 558
+ + L A++ GL+ I F SR L E++ ++ ++ + A
Sbjct: 288 --------------DATGLVADLADAGLQTICFVASRSLAEVISAHAQDRVTSGA----- 328
Query: 559 SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLW 618
+ YRAGY+ EDRRRIE G + V ATNALELG+D+ +D + G+PG +++LW
Sbjct: 329 RVASYRAGYLPEDRRRIEARLQDGSVRAVVATNALELGVDISGMDAVVIAGYPGRLSALW 388
Query: 619 QQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCA 678
QQAGR+GR +L V VA E PLDQY +PE LF S E + N VL HL A
Sbjct: 389 QQAGRAGRSGHDALVVLVARENPLDQYLFGHPELLFSSSAEATVLHPDNPYVLGPHLAAA 448
Query: 679 ALEHPLSLIYDEKYFGSGLS------SGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMP 732
A E LS DE+++GS + +G L+ RG ++F + E+
Sbjct: 449 AQEAYLSPA-DEEFYGSAFTEMCEMLAGQHVLRRRGN-----------RLF-WTRPERA- 494
Query: 733 SHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSK 792
I +R+ + +++DM + ++ +E+ A V+ GAVY+HQG +LV E +
Sbjct: 495 VDAIDLRSAAGKGIDIVDMSTGRIIGVADEATADRTVHPGAVYLHQGDQWLVDEYHPIEH 554
Query: 793 IALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYR 852
AL + Y+T+ + + + + + + + +T G+ R
Sbjct: 555 HALVHQDLPGYWTQPQSASTVRI-------LRQEKRRDFGRGYVAYGQVELTEQVVGYLR 607
Query: 853 LWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSG-LHAASHALLHVV 911
+ ++D+V L +P ++ ++A W +P +V ++ + +G H A H + ++
Sbjct: 608 RDEITNDVWDSVALEMPTHTMITKACWWVIPDAVVDDLKLDAVHLAGAAHGAEHTAIGLL 667
Query: 912 PIYVRCNFSDLA 923
P+++ C+ D+
Sbjct: 668 PMFLPCDRWDVG 679
>gi|227494430|ref|ZP_03924746.1| ATP-dependent helicase [Actinomyces coleocanis DSM 15436]
gi|226832164|gb|EEH64547.1| ATP-dependent helicase [Actinomyces coleocanis DSM 15436]
Length = 798
Score = 333 bits (854), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 239/771 (30%), Positives = 377/771 (48%), Gaps = 93/771 (12%)
Query: 218 GQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVAT 277
G++V R + PD A K+ GI K + HQ ++ + G + V+AT
Sbjct: 19 GRLVKHFSFPGRPGIYGTWPDWATPQVVDAFKTKGIEKPWQHQTQAATSIHHGTHTVIAT 78
Query: 278 MTSSGKSLCYNLPVLEAL--SHDLS-----------SSALYMFPTKALAQDQLRALLAMT 324
T SGKSLC LPVL AL S+D + ++ALY+ PTKALA DQ L +
Sbjct: 79 GTGSGKSLCAWLPVLTALENSNDANKRARLKDWARPTTALYLAPTKALAADQAHKLTELC 138
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
I +G DGDT ++ + W+R NA L++TNPD LH +LP + +++R L L+
Sbjct: 139 PDL-TGIRLGTADGDTPRETKEWVRANANLILTNPDYLHHVMLPGNQRWARFLGGLK--- 194
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
++++DE H ++G G H +L+LRRL RLC +YG++P+ +F +A
Sbjct: 195 ----------------YLIVDEMHYWRGITGSHISLVLRRLLRLCR-LYGANPTVIFLSA 237
Query: 445 TSANPREHCMELANLSTLEL--IQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRN 502
T A+P E L ++ ++ + D S A K +LW P + ++ + + R
Sbjct: 238 TVAHPAETAAALIGVTEADVHTVAEDTSRIAAKELILWQPGYAI------AENETEPRRV 291
Query: 503 AANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICV 562
+A +E + L A +V R + F RSR E V +++RE + PHL+ S+
Sbjct: 292 SAT------AEAAKLTAHLVGADARVLTFVRSRAAAESVSAHSREQISAYYPHLIGSVAA 345
Query: 563 YRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAG 622
YR GY+ E+RR +E G+L + TNALELGID+ +DVTL +G+PG+ ASLWQQ G
Sbjct: 346 YRGGYLPEERRELETALRTGQLRSLVTTNALELGIDISGLDVTLTVGWPGTRASLWQQIG 405
Query: 623 RSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEH 682
R+GR E L+V VA + PLD Y M +PE +F+ P+E I+ N +L H+ AA EH
Sbjct: 406 RAGRGETAGLSVLVAADNPLDNYVMAHPEIIFE-PVEAATINPTNQYILTPHICAAAAEH 464
Query: 683 PLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIE 742
PL+ D FG + + L+ GYL P+ + + P HT++ E
Sbjct: 465 PLTE-DDVAVFGLPSTKLFSELEQAGYLRLRPT-----GWYWNVALHAAP-HTLTELRGE 517
Query: 743 SERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLS--------SKIA 794
+V++ ++ V+ + ++A V+ GAVY+HQG T+ + E + + +A
Sbjct: 518 DTEVQVVEAETGRVIGTVSVAQADAAVHPGAVYVHQGQTFQIIEYVPAVVGGGVRPATVA 577
Query: 795 LCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTW-FGFYRL 853
L ++ ++ T T + + + D ++ A + TW G R+
Sbjct: 578 LAKRITTQFRTVAGSQTSVQI----------LDADNFSEGVTVWTAPSGKVTWKHGRTRV 627
Query: 854 WRGSGIIFDTVELYLPKYSY-------------ESQAVWIQVPQSVKAVVEQNFSFRSG- 899
S + D L LPK Y E+Q+ W ++ V + G
Sbjct: 628 ---SEQVTDFDTLRLPKLEYVGNQKLSMPSRVLETQSTWFELADEVATELGIELKDLPGA 684
Query: 900 LHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTG 950
LHA HA++ ++PI C+ DL H+ + P + ++D GG G
Sbjct: 685 LHACEHAMIAILPILATCDRWDLGGLSTILHEQTFAPT-VFVHDAFAGGAG 734
>gi|350568812|ref|ZP_08937210.1| ATP-dependent helicase [Propionibacterium avidum ATCC 25577]
gi|348661055|gb|EGY77751.1| ATP-dependent helicase [Propionibacterium avidum ATCC 25577]
Length = 755
Score = 333 bits (853), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 222/729 (30%), Positives = 356/729 (48%), Gaps = 94/729 (12%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATM 278
Q+VHV+ A E P L ++ + A++ GIS + HQA + AG + + T
Sbjct: 9 QVVHVDHRDAASGRTCEWPSWLPEDCRKAVEKAGISHPWEHQALLAELAKAGHHTAICTA 68
Query: 279 TSSGKSLCYNLPVLEALSH-----------DLSSS---------ALYMFPTKALAQDQLR 318
T+SGK+L Y LP++ A + +LS+S ALY+ PTKALA DQ R
Sbjct: 69 TASGKTLAYLLPIMAATASTTPVLPDPPTPNLSASLRDSLKRNSALYLAPTKALAHDQDR 128
Query: 319 ALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILS 378
+ + + DGD+ +R + R+ AR ++TNPDMLH ++LP H +++ +L
Sbjct: 129 ICREIGPR---NWLVSTLDGDSDDAERRFAREQARYVLTNPDMLHHTVLPSHSRWASLLG 185
Query: 379 NLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPS 438
+LR +VVIDEAH Y+G FG H A ++RRL RLC ++G+DP
Sbjct: 186 SLR-------------------YVVIDEAHRYRGVFGAHVAQVIRRLRRLC-RMHGADPV 225
Query: 439 FVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMD 498
F+ S+ATS N E L + ++++ D SP + VLW P + S
Sbjct: 226 FLLSSATSTNAAEAGARLLGVEKVDVVDEDCSPHPGRDVVLWQPAESVSS---------- 275
Query: 499 DTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVD 558
+ + L A++ G++ I F SR L E++ ++ ++ + A
Sbjct: 276 --------------DATGLVADLADAGMQTICFVASRSLAEVISAHAQDRVTGGA----- 316
Query: 559 SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLW 618
I YRAGY+ EDRR IE G + V ATNALELG+DV +D + G+PG ++SLW
Sbjct: 317 RIASYRAGYLPEDRRAIEAGLQNGSVRAVVATNALELGVDVSGMDAVVIAGYPGRLSSLW 376
Query: 619 QQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCA 678
QQAGR+GR R +L V +A E PLDQY +PE LF S +E + N VL HL A
Sbjct: 377 QQAGRAGRSGRDALVVLMARENPLDQYLFNHPELLFSSSVESTVLHPDNPYVLGPHLAAA 436
Query: 679 ALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISI 738
A E LS DE+++GS + L + L ++F + + I +
Sbjct: 437 AQEAYLSPA-DEEFYGSAFAGMCEMLAAQKVLRR-----RGNRLFWTRPGRAVDA--IDL 488
Query: 739 RAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQK 798
R+ + ++ID + V+ ++E+ V+ GAVY+HQG +LV E + + AL +
Sbjct: 489 RSAAGKGIDIIDRSTGRVIGVVDEAAGDRTVHPGAVYLHQGDQWLVDEYDPAEHHALVHQ 548
Query: 799 ADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALAC---TVTTTWFGFYRLWR 855
Y+T+ + + + + I +++ +AC +T G+ R
Sbjct: 549 GLPGYWTQPQSASTVRI----------IQEEKRRDFGPGYVACGQVELTEQVVGYLRRDE 598
Query: 856 GSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSG-LHAASHALLHVVPIY 914
+ ++D+ L +P ++ +QA W +P V + + +G H H + ++P++
Sbjct: 599 ITNDVWDSTALDMPTHTMITQACWWVIPDEVVDKLGLDAVHLAGAAHGCEHTAIGLLPMF 658
Query: 915 VRCNFSDLA 923
C+ D+
Sbjct: 659 SPCDRWDVG 667
>gi|329945476|ref|ZP_08293220.1| putative DEAH-box helicase [Actinomyces sp. oral taxon 170 str.
F0386]
gi|328528966|gb|EGF55904.1| putative DEAH-box helicase [Actinomyces sp. oral taxon 170 str.
F0386]
Length = 860
Score = 332 bits (852), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 244/809 (30%), Positives = 379/809 (46%), Gaps = 100/809 (12%)
Query: 215 GSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVV 274
G G++VH++ AR + P+ + A + G+ + ++HQ + ++ AG++ V
Sbjct: 18 GRDGRLVHLQRPPARPGRHSDWPEWADPDLVVAYRRIGVERPWTHQVAAAQSAHAGRHTV 77
Query: 275 VATMTSSGKSLCYNLPVLEAL-------------SHDLSSSALYMFPTKALAQDQLRALL 321
+AT T SGKSL LP L + +H + LY+ PTKALA DQ +L
Sbjct: 78 LATGTGSGKSLAAWLPALSDVLSAQSPGADSRISAHGRRPTTLYLSPTKALAADQAASLG 137
Query: 322 AMTKAFDA-------------SIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILP 368
+ + ++ G DGDT +R W+R +A +++TNPD LH S+LP
Sbjct: 138 RLIGELETVQREAGTPAGSLRTVRAGTCDGDTPLPERDWVRAHADVVLTNPDFLHFSLLP 197
Query: 369 YHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRL 428
H +++R+L LR ++VIDE HAY+G G H AL+LRRL RL
Sbjct: 198 GHERWTRLLRGLR-------------------YIVIDECHAYRGILGAHVALVLRRLLRL 238
Query: 429 CSHV--YGSDPSFVFSTATSANPREHCMEL--ANLSTLELIQNDGSPCAQKLFVLWNPTS 484
+ + +G P + ++AT+A P L A + + +DG+P ++ LW P
Sbjct: 239 VARLRPHGPQPIVLCASATAAEPALTAARLIGAEPDDVVAVTDDGAPAGERTLALWQP-- 296
Query: 485 CLRSVLNKSQTDM----DDTRNAANKTSSP----------ISEVSYLFAEMVQHGLRCIA 530
LR D+ D R A + P + E + L +++ G R +
Sbjct: 297 ALRDPWMLPAPDVEPAQDSARAAEPDSGDPGEDPSARRSAVVEAAELLVDLMSVGARALV 356
Query: 531 FCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAAT 590
F RSR+ E+V R L + P L+ ++ YR GY+ E+RR +E D G+L +A T
Sbjct: 357 FVRSRRSAEIVAERARHTLGLSLPELIGTVSAYRGGYLPEERRALEADLRSGRLRALATT 416
Query: 591 NALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYP 650
NALELGIDV +D L G+PG+ SL QQAGR+GR LAV +A + PLD Y + +P
Sbjct: 417 NALELGIDVTGLDAVLIAGWPGTRVSLGQQAGRAGRAGSRGLAVLIASDNPLDAYLVHHP 476
Query: 651 EKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYL 710
E +F +P E D N VL HL AA E PL D FG S + L+ RG L
Sbjct: 477 EAVFAAP-EATVFDPANPYVLAPHLCAAASEAPLR-TSDLALFGLADDSLLRELEGRGAL 534
Query: 711 SSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVY 770
P+ F + P S+R V++ + V+ ++ + A V+
Sbjct: 535 RRRPT-----GWFWNVNLPGRPQDLTSLRGDGPPEVPVVEADTGAVIGTVDGAAADSTVH 589
Query: 771 EGAVYMHQGHTYLVKELNLSSKIALC-QKADLKYFTKTRDYTDIH-------------VS 816
EGAVY+HQG Y+V+E L+ +AL Q+A + Y T+ R + + V
Sbjct: 590 EGAVYVHQGRVYVVEE--LADDVALVRQRAAVGYRTRARSRSSVRIIAEREQQVWGRLVG 647
Query: 817 GGNN-----AYATKISKDQLTKTTAQALACT-----VTTTWFGFYRLWRGSGIIFDTVEL 866
GG+ + + D A A+ + VT+ G+ R+ G + L
Sbjct: 648 GGDRLDDVPEPSAHTADDGREAPGAAAITWSFGSVEVTSQVTGYQRMALPGGEVVSQHAL 707
Query: 867 YLPKYSYESQAVWIQVPQ-SVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPE 925
+ ++ + AVW +PQ + +A + LHAA HA + ++P+ C+ D+
Sbjct: 708 EMDEHVLPTAAVWWTIPQETCEAAGLEPTDLPGALHAAEHASIGMLPLLATCDRWDIGGL 767
Query: 926 CPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
H P + +YD H GG G +++
Sbjct: 768 PTAAHPQTGAPT-VFVYDGHAGGAGFAER 795
>gi|448534935|ref|XP_003870863.1| ATP-dependent RNA helicase [Candida orthopsilosis Co 90-125]
gi|380355219|emb|CCG24735.1| ATP-dependent RNA helicase [Candida orthopsilosis]
Length = 1129
Score = 332 bits (852), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 245/767 (31%), Positives = 393/767 (51%), Gaps = 82/767 (10%)
Query: 245 KSALKSTGIS---KLYSHQAESIMASL---AGKNVVVATMTSSGKSLCYNLPVLEALSHD 298
++ L + GIS LY+HQAE++ L +++V+T T+SGKSL Y +PVL ++ D
Sbjct: 288 EALLAAKGISIDDGLYTHQAEALETLLDESKEAHLIVSTSTASGKSLIYQIPVLNSILWD 347
Query: 299 LS-------SSALYMFPTKALAQDQLRALLAMTKAFDAS----IDIGVYDGDTTQKDRMW 347
++ ++AL++FPTKALAQDQ++ + ++ I I YDGDT +R+
Sbjct: 348 ITNGLKGRHTTALFIFPTKALAQDQIKQFRSFLNRLPSNSRRPIVIDTYDGDTPFTERVR 407
Query: 348 LRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFL-FIRFVVIDE 406
+ A +L TNPD +H SILP SN E + F+ ++++V+DE
Sbjct: 408 ISKEADILFTNPDTIHASILPN--------SNF----------ESWREFIKGLKYIVVDE 449
Query: 407 AHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVF--STATSANPREHCMELANL---ST 461
H YKG FG + ++ RL R+ + + SF F +AT +NP +H + ++ S
Sbjct: 450 LHIYKGTFGINVGYVMARLLRIKNRFCPDEKSFRFVSCSATISNPAQHFKTICSIPDKSE 509
Query: 462 LELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVS--YLFA 519
+ + NDGS +K ++WNP + N+ + D+ N SPI E + L
Sbjct: 510 VVHVSNDGSARCEKKMLVWNPPVLMN---NRGERGPADSSNKLITRVSPIFESARLLLTL 566
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEE---TAPHLVDS-ICVYRAGYVAEDRRRI 575
GL+ I FC R + E+++ R +L++ + LV S I YR GY DRR I
Sbjct: 567 LTELQGLKIIVFCPIRVVSEMMMREVRSLLQKPPYSKSGLVQSDIMSYRGGYSKSDRRII 626
Query: 576 ERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRE--RPSLA 633
E+ F G+L + ATNALELGID+ +DV + GFP S ++L QQ GR+GRR+ + SL
Sbjct: 627 EKKMFDGQLRAIIATNALELGIDLSDLDVVITCGFPMSKSNLHQQFGRAGRRKDAKGSLV 686
Query: 634 VYVAFEGPLDQYFMKYPEKLFKSPIECCHIDA-----QNHKVLEQHLVCAALEHPLSLIY 688
++V P+DQY++++ + L + E +D+ +LE+HL CAA E + L
Sbjct: 687 IFVPGRSPVDQYYIEHADDLVHNTYEDLCVDSLRDMEHGSLILERHLQCAAYEDAIVLND 746
Query: 689 DEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEV 748
D K+F G S +N L D + + PS +SIRA+E + V
Sbjct: 747 DYKWFSKGRS--FKAFEN--ILIEHLVQDIGNRFIPNSKYMPKPSKLVSIRAVEDDNVAV 802
Query: 749 IDMQSNE--VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTK 806
+D+ +N V+EE+E S+ F +Y+G +++HQG YLVKE N + A ++ ++ + T
Sbjct: 803 VDITNNRNIVIEEVELSRTTFTIYDGGIFLHQGQPYLVKEFNHEQRYAKVERVNVDWTTS 862
Query: 807 TRDYTDIHVSGGNNAYA-TKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVE 865
RDYTD+ IS + A + FGF+++ R I+ + VE
Sbjct: 863 QRDYTDVDPEEIELVKPLVPISSTKSVDIPAFFGLIKIEMKVFGFFKVNRKEEIL-EVVE 921
Query: 866 LYLPKYSYESQAVWIQVPQ-SVKAVVEQNFSFRSGLHAASHALLHVVPIYV-----RCNF 919
+ P ++ W+ VP+ ++ + + S G+HAA+H +++++PI+V N
Sbjct: 922 VNNPPIIAYAKGCWLNVPKAAIDLIKAKQLSAAGGIHAAAHGIMNMLPIFVNYSQANANL 981
Query: 920 SD--LAPECPNP-------HDSRYFPERILLYDRHPG--GTGVSKQV 955
D LA EC P + R P R++ YD G G+G S ++
Sbjct: 982 GDFELATECKAPTKEFKTTNSERKRPARLVFYDTKGGKNGSGYSYKI 1028
>gi|431930100|ref|YP_007243146.1| helicase family protein with metal-binding cysteine cluster
[Thioflavicoccus mobilis 8321]
gi|431828403|gb|AGA89516.1| helicase family protein with metal-binding cysteine cluster
[Thioflavicoccus mobilis 8321]
Length = 806
Score = 332 bits (852), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 228/754 (30%), Positives = 366/754 (48%), Gaps = 89/754 (11%)
Query: 236 IPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL 295
+P L AL + G+ +LY+HQ E+ G+++V+AT T+SGK+LCYNLPVL+A+
Sbjct: 56 LPPGLHPGLAQALAARGVERLYAHQREAWDRVAEGRHLVIATPTASGKTLCYNLPVLDAV 115
Query: 296 SHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLL 355
ALY+FPTKALAQDQ+ L A+ +A + +DGDT R +R ++
Sbjct: 116 LTR-GVKALYLFPTKALAQDQVAELNALNQAATLGVKAFTFDGDTPGDARQAVRTRGDIV 174
Query: 356 ITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFG 415
++NPDMLH +ILP+H ++++ L FVV+DE H+Y+G FG
Sbjct: 175 VSNPDMLHQAILPHHTKWAQFFEGLA-------------------FVVVDELHSYRGVFG 215
Query: 416 CHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQK 475
H A +LRRL R+C YG P F+F++AT ANP L + + G+P +
Sbjct: 216 SHVANVLRRLRRIC-RFYGVAPQFLFASATIANPAALAEGLIG-EPVAAVTESGAPAGDR 273
Query: 476 LFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSR 535
+LWNP V+N D+ R +A ++ ++ ++ + GL+ I F RSR
Sbjct: 274 HLLLWNP-----PVINP---DLG-LRASARSQTTRLARLA------AKAGLKTIVFARSR 318
Query: 536 KLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALEL 595
+ E++ Y +++ + P + YR GY+ +RR E+ G++ V +T+ALEL
Sbjct: 319 LMVEVITKYLKDVFDRD-PRRPPRVLAYRGGYLPSERRVAEKAMRAGRVDLVVSTSALEL 377
Query: 596 GIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFK 655
G+D+G +DV + G+PG++A+ WQ+ GR+GRR RPSL V VA PLDQY +++PE F
Sbjct: 378 GVDIGALDVAVLNGYPGTVAATWQRLGRAGRRLRPSLGVLVATSDPLDQYLVRHPEFFFD 437
Query: 656 SPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPS 715
+ E I +L H+ CAA E P D + FG G + GYL +
Sbjct: 438 ASPEQARIHPDQLLILLDHVRCAAFELPFQ---DGESFG-----GEDLAEMLGYLRDEGL 489
Query: 716 LDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQ--SNEVLEEIEESKAFFQVYEGA 773
L + +I + P+ +S+R++ + V+++ + VL E++ + A +YEGA
Sbjct: 490 LQRQGGRWYWIA-DSYPAQAVSLRSVAEGNFVVVEVTDGGSRVLAEVDYTAAPGTLYEGA 548
Query: 774 VYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTK 833
+YM Q Y V+ L+ + A + Y+T DYT + + + + L
Sbjct: 549 IYMVQARPYQVERLDWVGRKAYVRATRADYYTDAIDYTRLKI----------LDRFDLRP 598
Query: 834 TTAQALA---CTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQV-PQSVKAV 889
A A + + G+ ++ S + LP + AVW QV P +++ +
Sbjct: 599 EGLAAAAHGEVHLVRRYPGYKKIRYYSHDNVGYGNINLPDQELHTTAVWWQVRPDALETL 658
Query: 890 VEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRY--------------- 934
+ G A++AL HV + DL + + +
Sbjct: 659 LPDRQQAIEGFLGAAYALHHVAVLRAMAELRDLGRAVGDGQGTWFATLGADGRGQLRGAE 718
Query: 935 -----------FPERILLYDRHPGGTGVSKQVTD 957
F + LYD +PGG G+S + D
Sbjct: 719 NEPVGVGDLTGFEPTLFLYDNYPGGVGLSAPLFD 752
>gi|124485496|ref|YP_001030112.1| NADPH-dependent FMN reductase [Methanocorpusculum labreanum Z]
gi|124363037|gb|ABN06845.1| DEAD/DEAH box helicase domain protein [Methanocorpusculum labreanum
Z]
Length = 738
Score = 332 bits (851), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 231/704 (32%), Positives = 357/704 (50%), Gaps = 73/704 (10%)
Query: 255 KLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQ 314
+LY+HQA++ GKNV++ T T+SGK+L Y LPV E L + ++AL+++PTKAL +
Sbjct: 42 QLYTHQADTFDHVFEGKNVIITTPTASGKTLAYALPVFEGLIANPEATALFIYPTKALTR 101
Query: 315 DQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFS 374
DQL L ++ A +YDGDT Q+ R +R ++R+++TN LH IL + ++
Sbjct: 102 DQLLFLKSLDTDLRARTKPAIYDGDTRQELRSKIRSSSRIILTNMYELH-HILAWRAKWG 160
Query: 375 RILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYG 434
+NL +VV+DEAH Y+G FG +TAL+LRRL R+C++ Y
Sbjct: 161 DFWANLS-------------------YVVVDEAHRYRGIFGSNTALLLRRLRRVCNY-YD 200
Query: 435 SDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQ 494
+DP F+ STAT N L L +E + NDGSP A++ F +++P
Sbjct: 201 TDPRFLLSTATLGNAGTFAETLTGLPFVE-VDNDGSPRAKRTFRIYSPQ----------- 248
Query: 495 TDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAP 554
NK S IS + L + G++ + F RSRK E+ RE L
Sbjct: 249 ----------NKNS--ISAAAELVTSQMNAGMQTLCFTRSRKAAEITAIRCREELP---- 292
Query: 555 HLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSI 614
I YR GY +RR IE G + GV +TNALE+GIDVG +D + GFPGS+
Sbjct: 293 --AGKIASYRGGYRPSERREIESALKTGNMSGVISTNALEVGIDVGGLDSVVISGFPGSM 350
Query: 615 ASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQH 674
S+ QQAGR+GR ++ ++ ++A + P+DQY+ + PE F +P E + N +L H
Sbjct: 351 ISVLQQAGRAGRNQKDAVITFIADQNPIDQYYARNPEAFFNAPQEEVILGIHNPYLLSAH 410
Query: 675 LVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSH 734
L+CAA E P + D++YFG S I +LK+ L+ S++K + Y G + P
Sbjct: 411 LLCAAAELPYRIERDQEYFGEAASDIIDSLKDAHLLA------STSKGYVYCGGDN-PVQ 463
Query: 735 TISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIA 794
+++E + V N LE ++E++A+ + Y GAV HQG Y V+ ++ +I
Sbjct: 464 NTPFFGMDAESWTV--RYENTTLETMDENQAYREAYFGAVIFHQGERYRVETIDAELRII 521
Query: 795 LCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLW 854
K Y T+ T+I ++ T+ D L + L V++ G+ +
Sbjct: 522 RVVKTYDIYSTRPIISTEISITSREK---TRRHND-LIVNYGEVL---VSSQLRGYSVIE 574
Query: 855 RGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIY 914
I T EL + + ++A WI + + E +F LH HAL+ +P Y
Sbjct: 575 YDQ--IVTTCELDVAPRQFTTKACWITIDEECGIDAE---AFPGSLHGVEHALIAAMPHY 629
Query: 915 VRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDM 958
V C+ SD+ P S I +YD GG G++++ D+
Sbjct: 630 VLCDRSDIG-GVATPFHSDTLAPTIFMYDGVKGGIGLTEKAADL 672
>gi|313679901|ref|YP_004057640.1| hypothetical protein [Oceanithermus profundus DSM 14977]
gi|313152616|gb|ADR36467.1| Protein of unknown function DUF1998 [Oceanithermus profundus DSM
14977]
Length = 743
Score = 332 bits (850), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 237/745 (31%), Positives = 363/745 (48%), Gaps = 91/745 (12%)
Query: 215 GSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVV 274
G GQ+ AR +V A + L G++ Y+HQAE+ AG NVV
Sbjct: 21 GYAGQIAFHRVQPARPPEVVPYEGAF----RPVLARLGLAP-YAHQAEAFARLEAGANVV 75
Query: 275 VATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIG 334
+AT T+SGKSL + PVL A+ +AL+++PTKALA+DQ L + FD + +
Sbjct: 76 MATPTASGKSLVFQAPVLAAMQQ--GGTALFLYPTKALARDQRSRLETLADPFDLADRVF 133
Query: 335 VYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYL 394
YDGDT R R+ ++TNPDMLH ILP H ++ L LR
Sbjct: 134 TYDGDTPPGRRRRAREQGLAILTNPDMLHFGILPRHAAWAGFLGRLR------------- 180
Query: 395 IFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCM 454
+VVIDEAH ++G FG H ALILRRL R+ H YG+ P + ++AT ANP H
Sbjct: 181 ------YVVIDEAHYHRGVFGSHVALILRRLLRIAEH-YGAHPQLIAASATIANPAAHAA 233
Query: 455 ELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEV 514
L I G ++ FV+W+P K+ D R +AN E
Sbjct: 234 ALTG-RPFAAITASGR-FSELEFVVWHP---------KALDAGGDRRRSANL------EA 276
Query: 515 SYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRR 574
+ L H L+ + F SRK EL+ YTR E D I YRAGY AE+R +
Sbjct: 277 AELAVWAATHDLKTLIFTGSRKTAELIGRYTRGTAVE------DKIRSYRAGYTAEERAQ 330
Query: 575 IERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAV 634
+E F G+L + +T+ALELGID+G +D + +G+PGS+ + WQ+AGR+GR +L +
Sbjct: 331 LEEAFRAGELAVLVSTSALELGIDIGGLDAVVMVGYPGSVNAFWQRAGRAGRGRERALTL 390
Query: 635 YVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFG 694
++ E PLD+YF++ PE L SP E D +N + HL CAA E P+ + E
Sbjct: 391 WIPREDPLDEYFLQRPELLLGSPPESAVADWRNPYLYPPHLHCAAFELPVREV--ESLHR 448
Query: 695 SGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN 754
L G ++ G + + ++ K P +++R + + D +
Sbjct: 449 PELLEGEALVRRNGRVHT---------VY------KAPHRRLTLRG-SGVTFTLRDAEGR 492
Query: 755 EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIH 814
L +++E +A+++ + GAVY+HQG +YLV+ L+ + + Y+T+ R T+I
Sbjct: 493 -ALGQLDERQAYWEAHPGAVYLHQGESYLVRNLDPRKREIVLLPGLEDYYTQPRALTEIE 551
Query: 815 VSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYE 874
V +A ++ T G+ + + + + VE +P+ +++
Sbjct: 552 V---YPEHAQEVRPGVWVGRVRMREQVT------GYVKKRYVTEAVLEEVEQPMPEVAFD 602
Query: 875 SQAVWIQVPQSVKAVVEQNFSFR--SGLHAASHALLHVVPIYVRCNFSDLA----PECPN 928
++AVW P VEQ R G+HA HA++ ++P++V D+ P P
Sbjct: 603 TEAVWFHPP------VEQLAVDRVPGGIHALEHAMIGLLPLFVLAERGDVGGVSYPIYPR 656
Query: 929 PHDSRYFPERILLYDRHPGGTGVSK 953
P S + +YD +PGG G ++
Sbjct: 657 PLPSGEG-AVVFIYDGYPGGVGYAR 680
>gi|383790015|ref|YP_005474589.1| helicase family protein with metal-binding cysteine cluster
[Spirochaeta africana DSM 8902]
gi|383106549|gb|AFG36882.1| helicase family protein with metal-binding cysteine cluster
[Spirochaeta africana DSM 8902]
Length = 813
Score = 331 bits (849), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 231/745 (31%), Positives = 354/745 (47%), Gaps = 88/745 (11%)
Query: 235 EIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEA 294
++P L + L GI KLYSHQA++ ++ V+ T T+SGK+L YNLP+L+
Sbjct: 38 DLPADLRPELREGLTRRGIPKLYSHQAQAYEGVRNRQSTVIVTPTASGKTLSYNLPILQT 97
Query: 295 LSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDAS-----IDIGVYDGDTTQKDRMWLR 349
+ + ALY+FPTKAL+QDQ L + + + + I + YDGDT R R
Sbjct: 98 ILEQPETRALYLFPTKALSQDQQSELNELVQELEGAGSGSRIKVATYDGDTPSSVRTAAR 157
Query: 350 DNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHA 409
+++I+NPDMLH +LP H ++ + L NLR FVVIDE H
Sbjct: 158 ATGQIVISNPDMLHSGVLPNHPKWIQFLRNLR-------------------FVVIDEVHQ 198
Query: 410 YKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDG 469
Y+G FG HTA ++RRL R+C YG+DP FV +AT NPRE + L ++LI G
Sbjct: 199 YQGVFGSHTANLVRRLRRIC-RFYGADPVFVCCSATIGNPRELAENVVGLP-MQLIDTSG 256
Query: 470 SPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCI 529
+P +K +L+NP ++++ Q + P +E L ++ G++ I
Sbjct: 257 APQGRKHMILYNP-----PLVDRVQ---------GIRRGIP-AESRRLALRLLTRGIKTI 301
Query: 530 AFCRSRKLCELVLSYTREILEET-APHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVA 588
F RSR EL+ Y + L + + YR GY+ +RR IER G + GV
Sbjct: 302 VFARSRIYAELIAGYLNQSLHNVYTENQGIRVEAYRGGYLPGERRSIERGLREGTVHGVV 361
Query: 589 ATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMK 648
+TNALELGID+G +D + G+PGSIAS+WQQAGR+GR +L++ +A PLDQY M+
Sbjct: 362 STNALELGIDIGGLDAAILGGYPGSIASVWQQAGRAGRSSSVALSILIAGSAPLDQYVMQ 421
Query: 649 YPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLS----LIYDEKYFGSGLSSGITTL 704
+P+ E +D N + H+ CAA E PL D + +G L+
Sbjct: 422 HPDFCLAQSPEQGFVDPGNPYIRADHVKCAAFELPLQPGDEFFPDAEEYGEVLTETGVLR 481
Query: 705 KNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNE--VLEEIEE 762
+ G Y P+ IS+R+ SE +ID + V+ E++
Sbjct: 482 RTAGRY--------------YWADRSYPAEGISLRSAVSENVVIIDRTKGKHRVIGEMDR 527
Query: 763 SKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKT---------RDYTDI 813
A V+ A+Y+H+G Y V+EL+L ++ ++ ++Y+T ++ +
Sbjct: 528 VSAKELVFPKAIYLHRGEQYQVEELDLENRRCYVVESRVEYYTDALTKRRLQVLEEFETL 587
Query: 814 HVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSY 873
+ G + + Q K T +G L V L+ P S
Sbjct: 588 DLPGARVRMVDLLVRSQAAKYKKIRFH-THENVGYGEISLPEEEMHTRAAVLLFYPD-SA 645
Query: 874 ESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDL--APECPNPHD 931
QA+ P+S VV + G V P+ + C DL A +PH
Sbjct: 646 AGQALRAIAPESQPGVVARLGWLLRG----------VAPLLLLCRAGDLGSAERIRDPH- 694
Query: 932 SRYFPERILLYDRHPGGTGVSKQVT 956
+ + L+DR+PGGTG+++ +
Sbjct: 695 --FGVPALYLFDRYPGGTGLAEAIA 717
>gi|453082824|gb|EMF10871.1| P-loop containing nucleoside triphosphate hydrolase protein
[Mycosphaerella populorum SO2202]
Length = 576
Score = 331 bits (849), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 188/527 (35%), Positives = 285/527 (54%), Gaps = 32/527 (6%)
Query: 404 IDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLE 463
+DE H Y G FG H A I+RRL R+C+ V F+ +AT ANP EH + + ++
Sbjct: 1 MDELHVYNGLFGAHVAFIMRRLRRICAAVGNRKVKFISCSATVANPEEHMRTIFGIEDIK 60
Query: 464 LIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQ 523
LI DGSPC +K FV WN T D + + E + LF ++V
Sbjct: 61 LIDFDGSPCGRKEFVCWN-------------TPYKDPGDPTSGRGDTFMETARLFCQLVL 107
Query: 524 HGLRCIAFCRSRKLCELVLSYTREILEETA-PHLVDSICVYRAGYVAEDRRRIERDFFGG 582
G+R I FCR RK CE+++ + LE +++ I YR GY A+DRRRIE++ F G
Sbjct: 108 RGVRVITFCRIRKQCEILVGAIKNELESLGRTEVMNRIMAYRGGYTAQDRRRIEKEMFEG 167
Query: 583 KLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPL 642
KL G+ T+ALELG+D+G +D + GFP +IA+L QQ+GR+GRR + S + V P
Sbjct: 168 KLVGIIGTSALELGVDIGSLDAVISHGFPYTIANLRQQSGRAGRRNKDSASFLVGDCFPT 227
Query: 643 DQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGIT 702
DQYFM P+++F P +D N VLE H+ CAA E P++ DEKYF LS
Sbjct: 228 DQYFMANPDEIFTRPNCELQVDLTNLLVLEGHVQCAAFEMPIAPDEDEKYFSKQLSE--- 284
Query: 703 TLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQ--SNEVLEEI 760
L N D +A+ ++ H PS +++IR E + +ID N VLEE+
Sbjct: 285 -LCNDRLRRDDLGFYHTAE--RFLPH---PSRSVAIRDTEDNHFAIIDTTHGRNVVLEEL 338
Query: 761 EESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNN 820
E S+AFF +YEG +++HQG YLVK ++ IA + + + T+ RD+TDI +
Sbjct: 339 EASRAFFTIYEGGIFLHQGKKYLVKHMSTEQMIAKVELVKVDWITQQRDFTDI-----DP 393
Query: 821 AYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWI 880
I + + + A + FGF++L + + I+ D V++ P S+ +W+
Sbjct: 394 IETEAIRRIPGSLSRAFFGNIKILQNVFGFFKLDKKNRIL-DAVQVDNPPIIIFSKGMWL 452
Query: 881 QVP-QSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPEC 926
VP ++++ + + + +G+HAA HA+L ++P +V D+ EC
Sbjct: 453 DVPREAIEILNSRRLNLAAGIHAAEHAILSLMPNFVISMPGDVKTEC 499
>gi|395205204|ref|ZP_10395957.1| putative DEAH-box helicase [Propionibacterium humerusii P08]
gi|328906766|gb|EGG26538.1| putative DEAH-box helicase [Propionibacterium humerusii P08]
Length = 766
Score = 331 bits (848), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 227/766 (29%), Positives = 371/766 (48%), Gaps = 109/766 (14%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATM 278
Q+V+++ A E P L ++ A+++ GI + + HQA + AG + + T
Sbjct: 21 QVVYLDHREAATGRTGEWPSWLPEDCLQAVETAGIHQPWEHQARFAELARAGNHAAICTA 80
Query: 279 TSSGKSLCYNLPVLEALSHDLS--------------------SSALYMFPTKALAQDQLR 318
T+SGK+L Y LP++ A + +SALY+ PTKALA DQ R
Sbjct: 81 TASGKTLAYLLPIMAATASTTPVVPEPPTPDRPASLRDSLHRNSALYLAPTKALAHDQER 140
Query: 319 ALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILS 378
+ + DGD+ + +R + R+ AR ++TNPDMLH ++LP H +++ +L
Sbjct: 141 VCREVGPR---DWLVSTLDGDSDEAERRFAREQARYILTNPDMLHHTVLPSHSRWASLLG 197
Query: 379 NLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPS 438
+LR +VVIDEAH Y+G FG H A ++RRL RLC ++G+DP
Sbjct: 198 SLR-------------------YVVIDEAHRYRGVFGAHVAQVIRRLRRLC-RMHGADPV 237
Query: 439 FVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMD 498
F+ S+ATS N E L + +E++ D SP + VLW P + S
Sbjct: 238 FLLSSATSTNAAEAGTRLLGVEKVEVVDEDCSPHPGRDVVLWQPAESVSS---------- 287
Query: 499 DTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVD 558
+ + L A + GL+ I F SR L E++ ++ ++ + A
Sbjct: 288 --------------DATGLVANLTDAGLQTICFVSSRSLAEVISAHAQDRVTSGA----- 328
Query: 559 SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLW 618
+ YRAGY+ EDRRRIE G + V ATNALELG+D+ +D + G+PG +++LW
Sbjct: 329 RVASYRAGYLPEDRRRIEASLQNGSVRAVVATNALELGVDISGMDAVIIAGYPGRLSALW 388
Query: 619 QQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCA 678
QQ GR+GR R +L V +A E PLDQY ++PE LF S +E + N VL HL A
Sbjct: 389 QQVGRAGRSGRDALVVLLARENPLDQYLFEHPELLFSSSVEATVLYPDNPYVLGPHLAAA 448
Query: 679 ALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISI 738
A E LS D++++GS + L ++ L ++F + E+ I +
Sbjct: 449 AQEAYLSPA-DQEFYGSTFAGMCEMLASQNVLRR-----RGNQLF-WTRSERA-VDAIDL 500
Query: 739 RAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQK 798
R+ S+ +++D+ + V+ ++E+ A V+ GAVY+HQG +LV E N AL +
Sbjct: 501 RSAASKGVDIVDVSTGRVIGVVDEAAADRTVHPGAVYLHQGDQWLVDEYNPVEHHALVHQ 560
Query: 799 ADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALAC---TVTTTWFGFYRLWR 855
Y+T+ + + + I +++ +AC +T G+ R
Sbjct: 561 DLPGYWTQPQSASTV----------RIIREERRRDFGPGYVACGQVELTEQVVGYLRRDE 610
Query: 856 GSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQ----NFSFRSGLHAASHALLHVV 911
+ ++D+V L +P ++ +QA W +P AVV++ H A H + ++
Sbjct: 611 ITNDVWDSVALEMPTHTMITQACWWVIP---DAVVDELGLDAVRLAGAAHGAEHTAIGLL 667
Query: 912 PIYVRCNFSDLAPECPNPHDSRYFPE----RILLYDRHPGGTGVSK 953
P++ C+ D+ + P+ I+++D GG G ++
Sbjct: 668 PMFSPCDRWDVGGV-----STVMLPDTGACTIVVHDGQSGGAGFAE 708
>gi|448414438|ref|ZP_21577507.1| helicase with metal-binding cysteine cluster [Halosarcina pallida
JCM 14848]
gi|445682004|gb|ELZ34428.1| helicase with metal-binding cysteine cluster [Halosarcina pallida
JCM 14848]
Length = 791
Score = 331 bits (848), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 241/779 (30%), Positives = 362/779 (46%), Gaps = 71/779 (9%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLD-NTKSALKSTGISKLYSHQAES 263
E+V LR GQ+ + AR E DA L+ +SAL GI +LY HQ E+
Sbjct: 3 ELVAWLRDRPYYDGQIRDHRRVPARGP---EFADATLEPRLESALADRGIDRLYRHQVEA 59
Query: 264 IMASLAGKNVVVATMTSSGKSLCYNLPVLE-ALSHDLSSSALYMFPTKALAQDQLRAL-- 320
I A G NVV+AT T+SGKSL Y +P E A+ H LY+ P AL DQ L
Sbjct: 60 IEAVRDGGNVVLATQTASGKSLAYTVPAFERAMDH--GGRTLYLGPQNALVADQDETLSD 117
Query: 321 LAMTKAFDASIDIGVYDGDTTQKDRMWLRDNA-RLLITNPDMLHMSILPYHGQFSRILSN 379
LA F + + +G Y G ++ ++ +RD +L++NPDMLH ++LP+
Sbjct: 118 LAHGLGFGSRVSVGQYTGRLSKTEKRDVRDRGPTVLLSNPDMLHYALLPH---------A 168
Query: 380 LRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSF 439
RL + F + VVIDE H Y+G FG H AL LRRL R+C +GSDP +
Sbjct: 169 HRLWEW---------FFSSLETVVIDEVHGYRGVFGSHVALTLRRLNRVCER-FGSDPQY 218
Query: 440 VFSTATSANPREHCMELANLS--TLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDM 497
V +AT NP EH + T L+ D S +VLWNP +
Sbjct: 219 VCCSATIGNPVEHAARITGKGEDTFRLVDEDTSGTGATHWVLWNPP------------EY 266
Query: 498 DDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYT-REILEETAPHL 556
+ R + + S E LF +++ G + +AF R+R+ E S + E+ E
Sbjct: 267 EGDRGGSGRRRSSHVETQNLFVDLLSRGHQTLAFTRARQAAERYASESASELRERGENEA 326
Query: 557 VDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIAS 616
+ Y+ E RR +E G + GV +TNALELG+DVG +D L G+PG+ S
Sbjct: 327 AAGVAAYQGALKHERRRELEAGLHDGSVTGVWSTNALELGVDVGGLDAVLIDGYPGTRMS 386
Query: 617 LWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLV 676
+QQAGR+GR +L V V E LDQY + +PE+ + E + +N ++L H+
Sbjct: 387 AFQQAGRAGRGSDDALVVMVGGEDQLDQYLLTHPEEFWDGEPERAVCNPENAELLPSHVA 446
Query: 677 CAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTI 736
AA E+ L +E++FG + L+ G L D++ + + P H +
Sbjct: 447 SAAAENWLKPD-EERHFGPTTPDVVAGLEAEGTLE---RRDTAEGVRWTYSGDGSPQHEM 502
Query: 737 SIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALC 796
S+R IES +++D +SN+V+ + A + GA+Y HQG +Y V EL+L +A
Sbjct: 503 SLRTIESREVDLLDGRSNDVVASLSFGDALRDAHPGAIYHHQGQSYEVTELDLDRDVATL 562
Query: 797 QKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRG 856
Y+T+ +I V A D + + +T GF R
Sbjct: 563 HPTWADYYTRVLHDKEITVEEDLKAKPLDARPDTEVRFADVTMRKRIT----GFERRDPK 618
Query: 857 SGIIFDTVELYLPKYSYESQAVWIQVPQSV----KAVVEQNFSFRSG------------- 899
G L LP+ + ++A++ VP V +A+ E+ +G
Sbjct: 619 RGEAIGRGSLDLPETTLRTKALYYTVPADVEREMRALGEETREDGAGQYDLSGGEYGFGG 678
Query: 900 -LHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTD 957
+HAA H ++ + P+ C+ D+ PH I +YD HPGG G+++ D
Sbjct: 679 GIHAAEHGMISLFPLSFLCDRGDIG-GLSTPHHPHTDRSTIFVYDGHPGGVGLTESGYD 736
>gi|422441762|ref|ZP_16518571.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA3]
gi|422473086|ref|ZP_16549567.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA2]
gi|422573370|ref|ZP_16648932.1| DEAD/DEAH box helicase [Propionibacterium acnes HL044PA1]
gi|313835744|gb|EFS73458.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA2]
gi|314928417|gb|EFS92248.1| DEAD/DEAH box helicase [Propionibacterium acnes HL044PA1]
gi|314970114|gb|EFT14212.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA3]
Length = 754
Score = 330 bits (847), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 227/766 (29%), Positives = 371/766 (48%), Gaps = 109/766 (14%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATM 278
Q+V+++ A E P L ++ A+++ GI + + HQA + AG + + T
Sbjct: 9 QVVYLDHREAATGRTGEWPSWLPEDCLQAVETAGIHQPWEHQARFAELARAGNHAAICTA 68
Query: 279 TSSGKSLCYNLPVLEALSHDLS--------------------SSALYMFPTKALAQDQLR 318
T+SGK+L Y LP++ A + +SALY+ PTKALA DQ R
Sbjct: 69 TASGKTLAYLLPIMAATASTTPVVPEPPTPDRPASLRDSLHRNSALYLAPTKALAHDQER 128
Query: 319 ALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILS 378
+ + DGD+ + +R + R+ AR ++TNPDMLH ++LP H +++ +L
Sbjct: 129 VCREVGPR---DWLVSTLDGDSDEAERRFAREQARYILTNPDMLHHTVLPSHSRWASLLG 185
Query: 379 NLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPS 438
+LR +VVIDEAH Y+G FG H A ++RRL RLC ++G+DP
Sbjct: 186 SLR-------------------YVVIDEAHRYRGVFGAHVAQVIRRLRRLC-RMHGADPV 225
Query: 439 FVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMD 498
F+ S+ATS N E L + +E++ D SP + VLW P + S
Sbjct: 226 FLLSSATSTNAAEAGTRLLGVEKVEVVDEDCSPHPGRDVVLWQPAESVSS---------- 275
Query: 499 DTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVD 558
+ + L A + GL+ I F SR L E++ ++ ++ + A
Sbjct: 276 --------------DATGLVANLTDAGLQTICFVSSRSLAEVISAHAQDRVTSGA----- 316
Query: 559 SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLW 618
+ YRAGY+ EDRRRIE G + V ATNALELG+D+ +D + G+PG +++LW
Sbjct: 317 RVASYRAGYLPEDRRRIEASLQNGSVRAVVATNALELGVDISGMDAVIIAGYPGRLSALW 376
Query: 619 QQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCA 678
QQ GR+GR R +L V +A E PLDQY ++PE LF S +E + N VL HL A
Sbjct: 377 QQVGRAGRSGRDALVVLLARENPLDQYLFEHPELLFSSSVEATVLYPDNPYVLGPHLAAA 436
Query: 679 ALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISI 738
A E LS D++++GS + L ++ L ++F + E+ I +
Sbjct: 437 AQEAYLSPA-DQEFYGSTFAGMCEMLASQNVLRR-----RGNQLF-WTRSERA-VDAIDL 488
Query: 739 RAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQK 798
R+ S+ +++D+ + V+ ++E+ A V+ GAVY+HQG +LV E N AL +
Sbjct: 489 RSAASKGVDIVDVSTGRVIGVVDEAAADRTVHPGAVYLHQGDQWLVDEYNPVEHHALVHQ 548
Query: 799 ADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALAC---TVTTTWFGFYRLWR 855
Y+T+ + + + I +++ +AC +T G+ R
Sbjct: 549 DLPGYWTQPQSASTV----------RIIREERRRDFGPGYVACGQVELTEQVVGYLRRDE 598
Query: 856 GSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQ----NFSFRSGLHAASHALLHVV 911
+ ++D+V L +P ++ +QA W +P AVV++ H A H + ++
Sbjct: 599 ITNDVWDSVALEMPTHTMITQACWWVIP---DAVVDELGLDAVRLAGAAHGAEHTAIGLL 655
Query: 912 PIYVRCNFSDLAPECPNPHDSRYFPE----RILLYDRHPGGTGVSK 953
P++ C+ D+ + P+ I+++D GG G ++
Sbjct: 656 PMFSPCDRWDVGGV-----STVMLPDTGACTIVVHDGQSGGAGFAE 696
>gi|328768746|gb|EGF78791.1| hypothetical protein BATDEDRAFT_26104 [Batrachochytrium
dendrobatidis JAM81]
Length = 991
Score = 329 bits (844), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 250/757 (33%), Positives = 367/757 (48%), Gaps = 112/757 (14%)
Query: 211 RKGIGSQGQMVHVEDISARKAVLVEIPDAL-LDNTKSALKS-TGISKLYSHQAESIMASL 268
R IGS HV I R+A ++P A+ T +++S T I Y HQ E++ A
Sbjct: 250 RDQIGSTHH--HVTAI--REAKYGKLPKAIEQSKTWQSIQSFTKIYHCYEHQTEALHAIQ 305
Query: 269 AGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL---LAMTK 325
G +V+++ TSSGKSL Y L +L L S ++ +FPTKALAQDQ R+L +
Sbjct: 306 DGHSVILSASTSSGKSLVYQLAILYELERIPHSRSILIFPTKALAQDQKRSLNNLICQLP 365
Query: 326 AFDASIDIGVYDGDTTQKD--RMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLI 383
S+ +DGDT+ R LR+ + +TNPDMLH +ILP+H + L NLR
Sbjct: 366 HLTHSV-CDTFDGDTSTNSNIRKNLRNTLSIALTNPDMLHAAILPHHALWHSFLMNLR-- 422
Query: 384 AFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFST 443
FVVIDE H Y G G H AL++RRL R+C + F+ +
Sbjct: 423 -----------------FVVIDEMHYYTGKLGVHFALVMRRLLRICRFYGNNHVQFIGCS 465
Query: 444 ATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNA 503
AT NP E L + + + ND S + ++WNP R + S +
Sbjct: 466 ATIGNPFELMKTLVGVEDVIAVTNDTSGMGARHQIIWNPP--YRFIDFPSLGRL------ 517
Query: 504 ANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVY 563
S + E + +FA + ++ I F ++R LCELV T ++++T P L I Y
Sbjct: 518 -----SVLDETAQVFAFCILKQVKTICFTKTRNLCELVFRETVAVIQKTNPELSKKIASY 572
Query: 564 RAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGR 623
R GY + DRRRIE F G+L G+ +TNALELGID+G +DV +H GFP S AS QQ GR
Sbjct: 573 RGGYNSSDRRRIESQLFCGELLGIVSTNALELGIDIGVLDVVIHCGFPFSFASYHQQLGR 632
Query: 624 SGRRERPSLAVYVAFE-GPLDQYFMKYPEKLFK-SPIECCHIDAQNHKVLEQHLVCAALE 681
+GRR + SL++ +A + DQ +K P LF+ + E +D N ++LE HL CA+ E
Sbjct: 633 AGRRGKHSLSILIAEDTNSGDQCMVKNPSYLFETTSFENVIVDISNQELLEPHLQCASAE 692
Query: 682 HPLSLIYDEKYFGS-GLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKM---PSHTIS 737
P + + D F S + + NR D L YI K PS IS
Sbjct: 693 IPFNPMQDAALFVSPNEDATLEDTINRLEYMCDQHLRFDVVQNAYICASKYQGNPSSDIS 752
Query: 738 IRAI-----ESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSK 792
IR + +S + V+D+ + V+E IE K F +Y AV++H G+ YL+ ++N++ K
Sbjct: 753 IRGMLLANADSNAFVVMDISTRTVIESIEPEKVAFTLYPDAVFLHMGNVYLIVDVNINQK 812
Query: 793 IALCQKA--DLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGF 850
+A ++A ++Y TK + T I V+T
Sbjct: 813 LARAKRAFPCIEYITKCKSLTRID---------------------------PVST----- 840
Query: 851 YRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQS-VKAVVEQNFSFRSGLHAASHALLH 909
RGS +V+ L K +P S V A+ ++N +HAA+H L
Sbjct: 841 ----RGS----KSVQTQLKK-----------IPLSTVLAIQQKNHDIEFSIHAATHILKS 881
Query: 910 VVPIYVRCN---FSDLAPECPNPHDSRYFPERILLYD 943
++P+Y N +A EC +P+ + RI+LYD
Sbjct: 882 ILPLYTSTNTDSMHSIAHECKSPNVKQSRSPRIILYD 918
>gi|383762304|ref|YP_005441286.1| putative ATP-dependent helicase [Caldilinea aerophila DSM 14535 =
NBRC 104270]
gi|381382572|dbj|BAL99388.1| putative ATP-dependent helicase [Caldilinea aerophila DSM 14535 =
NBRC 104270]
Length = 869
Score = 328 bits (842), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 223/680 (32%), Positives = 344/680 (50%), Gaps = 84/680 (12%)
Query: 245 KSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSAL 304
+ AL + GI +LY HQ+E++ A+L KN+V+ T T+SGK+LCYNLPVL AL + ++ AL
Sbjct: 29 QRALAAYGIQQLYVHQSEAVEAALRQKNIVITTPTASGKTLCYNLPVLHALLAEPAACAL 88
Query: 305 YMFPTKALAQDQLRALLAMTKAFDA-------SIDIGVYDGDTTQKDRMWLRDNARLLIT 357
Y+FPTKALA DQL L + KA DA + I YDGDT R +R ARLL+T
Sbjct: 89 YLFPTKALAHDQLEELNRLAKAIDAVDPTARLAPSIAAYDGDTPTPQRSRIRKRARLLLT 148
Query: 358 NPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCH 417
NPDMLH+SILP H Q++ L+ LR +VV+DE H Y+G FG H
Sbjct: 149 NPDMLHVSILPNHAQWADFLAGLR-------------------WVVLDEIHIYRGVFGSH 189
Query: 418 TALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLF 477
A +LRRL R+C H YG+ P F+ ++AT ANP + L + I+ +P +K
Sbjct: 190 VANVLRRLQRICRH-YGATPRFICTSATIANPTQLAERLIE-QRVHQIERSTAPRGEKHI 247
Query: 478 VLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKL 537
+L N T + D + + + E + L AE + GL+ I F RSR
Sbjct: 248 ILLN-------------TPLVDAEKGVRRAA--VLEAADLAAECIDAGLQTIVFGRSRVA 292
Query: 538 CELVLSYTREILEETAPHL------------------VDSICVYRAGYVAEDRRRIERDF 579
EL+L+Y R LE + + + YR GY+ +RR IE
Sbjct: 293 AELLLTYLRAGLERRRSRVEQPFPAGNEAVSNHTFVAAEHVQGYRGGYLPAERRSIEAGL 352
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFE 639
G + GV ATNALELGID+G + + G+PG IA+ WQQ GR+GR ++AV VA
Sbjct: 353 RSGLVRGVVATNALELGIDIGGLAAAIVCGYPGGIAATWQQFGRAGRTTDAAVAVLVATA 412
Query: 640 GPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSS 699
G LDQY +++ E LF+ E I N +L H+ CA E P DE + S +
Sbjct: 413 GLLDQYVIRHSEFLFEQSPEHALIHPDNLMLLVDHVRCAVAELPFH--RDEAFGASPYLA 470
Query: 700 GITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNE---- 755
+ L L+ + F + G + P+ +S+R++ E + ++ +
Sbjct: 471 DVLAL-----LTEQEEVQRHGDRFFWSG-LRHPAREVSLRSVGGEPVIIQQVEPDGEGER 524
Query: 756 ----VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYT 811
V+ E++++ A V++GA+Y H G +Y V+ L+L++ A D+ Y+T+ +
Sbjct: 525 SAPCVIGEVDQASAQLLVHDGAIYFHGGQSYQVQRLDLTALRADVTAVDVDYYTEAISDS 584
Query: 812 DIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKY 871
++ + +A + +++ L A+ V G+ ++ R + L +
Sbjct: 585 EVELL---TCHAVRSAENSLAAWGDVAVHAQV----IGYRKIKRTTHETLGVYPLDYARR 637
Query: 872 SYESQAVWIQVPQSVKAVVE 891
+ E+ A W ++ +V+ +E
Sbjct: 638 TLETSAYWCEITPAVQQELE 657
>gi|381190759|ref|ZP_09898275.1| helicase [Thermus sp. RL]
gi|380451327|gb|EIA38935.1| helicase [Thermus sp. RL]
Length = 728
Score = 328 bits (842), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 227/714 (31%), Positives = 351/714 (49%), Gaps = 96/714 (13%)
Query: 248 LKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMF 307
L++ G++ Y HQ ++ AG NVV+A T++GKSL Y PVL+A +++L +F
Sbjct: 50 LRALGLTP-YLHQQRALKRVEAGANVVLAYPTAAGKSLVYQAPVLQAALE--GATSLLLF 106
Query: 308 PTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSIL 367
PTKALA DQLR L AM + + YDGDT R R+ +L++NPDMLH +L
Sbjct: 107 PTKALAHDQLRRLRAMAQVLGVE-GVFPYDGDTPSATRRQAREQGLVLLSNPDMLHYGLL 165
Query: 368 PYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCR 427
P H ++ L+ LR +VV+DE HAY+G FG H ALILRRL R
Sbjct: 166 PRHPDWAPFLARLR-------------------YVVLDELHAYRGVFGTHVALILRRLLR 206
Query: 428 LCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLR 487
L H YG+ P + ++AT AN REH L L EL R
Sbjct: 207 LARH-YGASPQVLAASATIANAREHAEALTGLPFEELK-----------------AQVAR 248
Query: 488 SVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTRE 547
+ + P+ E +YL + + GL+ + F +R+ EL+ Y
Sbjct: 249 TERELLVLLPKPLXRRGERXRXPLLEAAYLARRLAEAGLKGLVFAGARRSAELIARYAAH 308
Query: 548 ILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLH 607
L + YRAGY A +RRR+E D G++ + +T+ALELG+D+G +D +
Sbjct: 309 PL----------VRPYRAGYTAXERRRLEADLKEGRVRVLVSTSALELGVDIGELDAVVL 358
Query: 608 LGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQN 667
+G+PGS A+ WQ+AGR+GR ER +L VY+ E P+D+YF+ P L +SP E D QN
Sbjct: 359 VGYPGSTAAFWQRAGRAGRGERRALLVYIPREDPMDEYFLHRPALLLESPPEEAVADPQN 418
Query: 668 HKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIG 727
+ HL AA E PL L+ + + R L + + + F
Sbjct: 419 PVLCPLHLHAAAREKPL------------LAEELLCPEARATLK-----ERNGRFFT--- 458
Query: 728 HEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKEL 787
++ P I++R + + + EVL ++E +A+++ + GA+Y+HQG +YLV+ +
Sbjct: 459 PKRNPHREITLRGLGATF--TLRGLDGEVLGYLDERQAYWEAHPGAIYLHQGESYLVRNV 516
Query: 788 NLSSKIALCQKADLKYFTKTRDYTDIHV-SGGNNAYATKISKDQLTKTTAQALACTVTTT 846
+L+ + A Y+T+ R TD+ V SG + + L + V
Sbjct: 517 DLARREVWLLPALEDYYTEPRAETDLEVLSGEEVGPGVWVGRVVLRER-------VVGYV 569
Query: 847 WFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHA 906
FY +G + + V L +P+ S+ ++A+W P++V A F G+HA HA
Sbjct: 570 KKRFY-----TGSVLEEVPLEMPEVSFPTEALWFHPPEAVPA-----FQIPGGIHALEHA 619
Query: 907 LLHVVPIYVRCNFSDLA----PECPNPHDSRYFPERILLYDRHPGGTGVSKQVT 956
++ ++P++V D+ P P P S P + +YD +PGG G ++
Sbjct: 620 MIGLLPLFVLAERQDVGGISYPFYPRPLPSPGGPT-VFIYDGYPGGVGYXRRAA 672
>gi|297624169|ref|YP_003705603.1| hypothetical protein [Truepera radiovictrix DSM 17093]
gi|297165349|gb|ADI15060.1| Protein of unknown function DUF1998 [Truepera radiovictrix DSM
17093]
Length = 769
Score = 328 bits (841), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 256/746 (34%), Positives = 364/746 (48%), Gaps = 69/746 (9%)
Query: 215 GSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVV 274
G +GQ+V + R A P L L + ++ Y+HQA ++ + AG NVV
Sbjct: 21 GYKGQIVFSGFLPERAAT--PAPSPLGGRYGELLAALSLTP-YTHQAAALELTEAGHNVV 77
Query: 275 VATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIG 334
VAT T+SGKSLCY LP L AL +AL +FPTKALA DQL L A + I
Sbjct: 78 VATPTASGKSLCYQLPTLAALGR--GRTALLLFPTKALAHDQLEKLRARAEPLGLGEAIA 135
Query: 335 VYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYL 394
+DGDT R LR+ AR L+TNPDMLH ILP+HG ++ L L LI
Sbjct: 136 AFDGDTPAPRRRALREGARCLLTNPDMLHYGILPHHGLWAHFLGALELI----------- 184
Query: 395 IFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCM 454
VIDE HAY+G G H A ILRRL RL YG+ P FV ++AT NP H
Sbjct: 185 --------VIDELHAYRGVMGTHVANILRRLLRLAR-RYGAAPRFVAASATVGNPAAHAE 235
Query: 455 ELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEV 514
L + +DG+P A + + W P D+ A + S SE
Sbjct: 236 NLTG-EAFAAVTDDGAPAAPRELLFWRPP------------DLPGEAGAEGRRRSVHSEA 282
Query: 515 SYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRR 574
+ L A V+ GL+ I FC SR+ EL+ Y L E I YRAGY AEDRR
Sbjct: 283 ADLAAHFVRAGLKSIFFCNSRRSAELLRRYVAGGLTEAE---AGCIAAYRAGYTAEDRRA 339
Query: 575 IERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAV 634
+E F G L +AAT+ALELG+DVG +D + +G+PGS+ + WQ+AGR+GR R +L +
Sbjct: 340 LEARFKRGDLLVLAATSALELGVDVGGVDAVVLVGYPGSLTAFWQRAGRAGRAGRRALTL 399
Query: 635 YVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFG 694
++ PLD++++ +PE + + E DA N ++ +HL CAA EHPL
Sbjct: 400 FIPGNDPLDEFYLTHPEMITEGRAEHAVADAFNSELFPRHLACAAFEHPLE--------- 450
Query: 695 SGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN 754
S ++ ++ P+ + + Y G P +S+R R V+ +S
Sbjct: 451 --ESEARAAARHGADPAALPNFVRARGRWYYRG--GYPHAKLSVRGTGGGRV-VLKDRSG 505
Query: 755 EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIH 814
+ L + A +++ GAVY+HQG Y+V+ L+L A Y+T+ R T+I
Sbjct: 506 KRLGVADLETALRELHPGAVYLHQGEDYVVRNLDLDRGEAFLLPHLGDYYTQVRAVTEID 565
Query: 815 VSGGN--NAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYS 872
V G + A A+ I L VTT + R S D L LP+ +
Sbjct: 566 VLGVDALGADASGIGALALADPIRTGR-VRVTTRVTSYVRKRLYSDATLDERPLDLPELA 624
Query: 873 YESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLA----PECPN 928
Y +QA+W V ++ AV + +HA H L+ ++P +V C +D+ P P
Sbjct: 625 YTTQALWFSVREAAAAVPPGLLP--AAMHALEHTLIGLLPAFVLCERADVGGVSYPLYPA 682
Query: 929 PHDSRYFPERILLYDRHPGGTGVSKQ 954
+ F +YD +PGG G +++
Sbjct: 683 TGEPLVF-----IYDGYPGGVGYARE 703
>gi|292655885|ref|YP_003535782.1| ATP-dependent helicase [Haloferax volcanii DS2]
gi|291371935|gb|ADE04162.1| ATP-dependent helicase [Haloferax volcanii DS2]
Length = 783
Score = 327 bits (839), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 225/721 (31%), Positives = 349/721 (48%), Gaps = 54/721 (7%)
Query: 248 LKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMF 307
L + GI LY+HQ ++I A G+NVV+AT T+SGKSL Y +P +E +H LY+
Sbjct: 44 LANRGIDGLYAHQTDAIEAVRNGQNVVLATPTASGKSLAYTIPAIER-AHKYDGRTLYIG 102
Query: 308 PTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRD-NARLLITNPDMLHMSI 366
P AL DQ L FD + + Y G + +R RD + +++T PDMLH +
Sbjct: 103 PQVALINDQETTLSDFAAPFD-DLSVTQYTGSLSSDERQQARDEDPSIVLTTPDMLHCGL 161
Query: 367 LPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLC 426
L + G R AF F + VV+DE H Y+G FG H L+ RRL
Sbjct: 162 LSHAGDLWR--------AF----------FESLELVVVDEVHEYRGVFGSHVGLVCRRLA 203
Query: 427 RLCSHVYGSDPSFVFSTATSANPREHCMELANLST--LELIQNDGSPCAQKLFVLWNPTS 484
R+C + G+DP FV +AT NPREH +A T EL+ D S ++ W P
Sbjct: 204 RICDRL-GADPQFVCCSATIGNPREHAATIAGQPTDSFELVDEDTSETGPTHWLFWQP-- 260
Query: 485 CLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSY 544
+ D D + S E LF ++V G + +AF R+R+ E +
Sbjct: 261 --------PEYDEGDAPAGGGQRRSNHGETMRLFVDLVMQGYQTVAFTRARQTAERYATI 312
Query: 545 TREILEETA-PHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHID 603
+ + L E + S+ Y AG + R IE G GV +T+ALELG+D+G +D
Sbjct: 313 SSDTLAERGRADIAQSVTAYHAGLRDDRRATIETALHSGDCAGVWSTSALELGVDIGSLD 372
Query: 604 VTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHI 663
L G+PG+ + +Q+AGR+GR PSL VA E LDQY +K+P +LF+ E
Sbjct: 373 AVLLDGYPGTQMATFQRAGRAGRGTDPSLVALVASEDQLDQYVIKHPNELFEQTPERAVA 432
Query: 664 DAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIF 723
+ N +L+ H AA+E PL DE YFGS ++TL N G L+ + D +
Sbjct: 433 NPSNSHLLKLHTHAAAMEGPLRTA-DEAYFGSTFPDIVSTLTNDGELTRRQT-DQGLEWR 490
Query: 724 EYIGHEKMPSHTISIRAIESERYEVIDMQ--SNEVLEEIEESKAFFQVYEGAVYMHQGHT 781
+ + +R I +ER + ++ + + L ++ + A V+ GA+Y HQG
Sbjct: 491 RTASGRTVNPYEQGLRTI-TERMVTLRVRGGATDELGKLPLNAALRDVHPGAIYHHQGQN 549
Query: 782 YLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALAC 841
Y V+ L+L +A + D + T+ + Y + ++A ++D +T A
Sbjct: 550 YEVQSLDLDRDVAWLAETDSDHQTRVQ-YEESMTIEEDSATKPLATRDDVTVHFADVTRR 608
Query: 842 TVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVE-QNFSFRSGL 900
T GF R +G I L LP+ + ++A+++ +P ++++++ + SF GL
Sbjct: 609 KQVT---GFQRRDHRTGEIMTEEALKLPETTLSTRALYVTLPPGLESLMQTMSGSFEGGL 665
Query: 901 HAASHALLHVVPIYVRCNFSDLA----PECPNPHDSRYFPERILLYDRHPGGTGVSKQVT 956
HA HAL+ P+ + C+ D+ E P S F +YD + GG G+++
Sbjct: 666 HAVQHALVATFPLVILCDRRDVGSVSTAEHPQTETSALF-----MYDSYRGGVGLARNGY 720
Query: 957 D 957
D
Sbjct: 721 D 721
>gi|448289875|ref|ZP_21481036.1| ATP-dependent helicase [Haloferax volcanii DS2]
gi|445580890|gb|ELY35257.1| ATP-dependent helicase [Haloferax volcanii DS2]
Length = 748
Score = 327 bits (838), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 225/721 (31%), Positives = 349/721 (48%), Gaps = 54/721 (7%)
Query: 248 LKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMF 307
L + GI LY+HQ ++I A G+NVV+AT T+SGKSL Y +P +E +H LY+
Sbjct: 9 LANRGIDGLYAHQTDAIEAVRNGQNVVLATPTASGKSLAYTIPAIER-AHKYDGRTLYIG 67
Query: 308 PTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRD-NARLLITNPDMLHMSI 366
P AL DQ L FD + + Y G + +R RD + +++T PDMLH +
Sbjct: 68 PQVALINDQETTLSDFAAPFD-DLSVTQYTGSLSSDERQQARDEDPSIVLTTPDMLHCGL 126
Query: 367 LPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLC 426
L + G R AF F + VV+DE H Y+G FG H L+ RRL
Sbjct: 127 LSHAGDLWR--------AF----------FESLELVVVDEVHEYRGVFGSHVGLVCRRLA 168
Query: 427 RLCSHVYGSDPSFVFSTATSANPREHCMELANLST--LELIQNDGSPCAQKLFVLWNPTS 484
R+C + G+DP FV +AT NPREH +A T EL+ D S ++ W P
Sbjct: 169 RICDRL-GADPQFVCCSATIGNPREHAATIAGQPTDSFELVDEDTSETGPTHWLFWQP-- 225
Query: 485 CLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSY 544
+ D D + S E LF ++V G + +AF R+R+ E +
Sbjct: 226 --------PEYDEGDAPAGGGQRRSNHGETMRLFVDLVMQGYQTVAFTRARQTAERYATI 277
Query: 545 TREILEETA-PHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHID 603
+ + L E + S+ Y AG + R IE G GV +T+ALELG+D+G +D
Sbjct: 278 SSDTLAERGRADIAQSVTAYHAGLRDDRRATIETALHSGDCAGVWSTSALELGVDIGSLD 337
Query: 604 VTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHI 663
L G+PG+ + +Q+AGR+GR PSL VA E LDQY +K+P +LF+ E
Sbjct: 338 AVLLDGYPGTQMATFQRAGRAGRGTDPSLVALVASEDQLDQYVIKHPNELFEQTPERAVA 397
Query: 664 DAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIF 723
+ N +L+ H AA+E PL DE YFGS ++TL N G L+ + D +
Sbjct: 398 NPSNSHLLKLHTHAAAMEGPLR-TADEAYFGSTFPDIVSTLTNDGELTRRQT-DQGLEWR 455
Query: 724 EYIGHEKMPSHTISIRAIESERYEVIDMQ--SNEVLEEIEESKAFFQVYEGAVYMHQGHT 781
+ + +R I +ER + ++ + + L ++ + A V+ GA+Y HQG
Sbjct: 456 RTASGRTVNPYEQGLRTI-TERMVTLRVRGGATDELGKLPLNAALRDVHPGAIYHHQGQN 514
Query: 782 YLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALAC 841
Y V+ L+L +A + D + T+ + Y + ++A ++D +T A
Sbjct: 515 YEVQSLDLDRDVAWLAETDSDHQTRVQ-YEESMTIEEDSATKPLATRDDVTVHFADVTRR 573
Query: 842 TVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVE-QNFSFRSGL 900
T GF R +G I L LP+ + ++A+++ +P ++++++ + SF GL
Sbjct: 574 KQVT---GFQRRDHRTGEIMTEEALKLPETTLSTRALYVTLPPGLESLMQTMSGSFEGGL 630
Query: 901 HAASHALLHVVPIYVRCNFSDLA----PECPNPHDSRYFPERILLYDRHPGGTGVSKQVT 956
HA HAL+ P+ + C+ D+ E P S F +YD + GG G+++
Sbjct: 631 HAVQHALVATFPLVILCDRRDVGSVSTAEHPQTETSALF-----MYDSYRGGVGLARNGY 685
Query: 957 D 957
D
Sbjct: 686 D 686
>gi|383809103|ref|ZP_09964627.1| DEAH-box helicase [Rothia aeria F0474]
gi|383448130|gb|EID51103.1| DEAH-box helicase [Rothia aeria F0474]
Length = 872
Score = 327 bits (837), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 235/805 (29%), Positives = 379/805 (47%), Gaps = 110/805 (13%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMAS----------- 267
Q+ HV I ARK P L A +S G+ + Y+HQ ++ A+
Sbjct: 48 QITHVHRIPARKGQYSPWPHWLHPRVIEAFESLGVHEPYTHQVQAAQAAHCAFDAALAED 107
Query: 268 ------------------LAGKNVVVATMTSSGKSLCYNLPVLEAL-----SHDLSSSA- 303
++V+VAT T+SGKSL Y +P +AL LS++A
Sbjct: 108 AHRLSFGRASGQGHDESGTTARHVIVATGTASGKSLSYLMPAFDALYRGARREPLSATAT 167
Query: 304 -------------LYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRD 350
LY+ P +AL+ DQL A+ A ++ YDGDT ++R W+R+
Sbjct: 168 NAGSTGFHQRANVLYISPARALSADQLNAITAYHLP---RLNAATYDGDTPAQERRWVRE 224
Query: 351 NARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAY 410
+A ++T PDML+ IL H Q++ L LR +VV+DE H+Y
Sbjct: 225 HANFVLTTPDMLNYGILGNHRQWANFLRGLR-------------------YVVLDEVHSY 265
Query: 411 KGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL--STLELIQND 468
+G FG H A +LRRL R+C+ +Y +P F ++ATSANP E +L + ++ I
Sbjct: 266 RGVFGAHIANLLRRLRRVCA-LYRVNPVFYGASATSANPAESFAKLIGVPEGNVDAITTS 324
Query: 469 GSPCAQKLFVLWNPTSCLRS-VLNK--SQTDMDDTRNAANKTS----SPISEVSYLFAEM 521
+P + +LW P + V +K + DTR+ A K + S I + + + ++
Sbjct: 325 TAPRGESTVILWEPEFLPDTQVTDKLAAGASTFDTRSEAEKQAPQRISAIEQGAQMLTDL 384
Query: 522 VQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFG 581
V R +AF RSR+ EL+ + L+ET L + YR+GY+ E+RR +E
Sbjct: 385 VLSRTRTLAFTRSRRGAELISQRAQRYLDETEAGLAHRVAAYRSGYMPEERRELEHRLRT 444
Query: 582 GKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGP 641
G+L G+A+T+ALELGID+ +D L G+PG+ AS Q+ GR+GR + +LAV +A + P
Sbjct: 445 GELLGLASTSALELGIDISGLDAVLVAGWPGTRASFIQRIGRAGRGGQDALAVLIAGDDP 504
Query: 642 LDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGI 701
LD Y + +P+ +F +E D N VL HL AA E PL + FG + + +
Sbjct: 505 LDTYLVHHPQAIFGQSVEATVFDPTNPYVLSPHLCAAAAESPLR-AEELSLFGEHIEALL 563
Query: 702 TTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIE 761
L + YL Y H + ++ + +RA Y++ID + ++ ++
Sbjct: 564 NRLVQQNYLRRRAD-------GWYWTHAESATNLVDLRATGGGPYQLIDAEDGSLIGTMD 616
Query: 762 ESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHV--SGGN 819
++A Q + GA+Y+HQ YLV+ L+ ++++ L + Y+T+ + T++ +
Sbjct: 617 SAQAMTQGHPGAIYIHQNAQYLVESLDEAARVILLSRVYPDYYTRAIEATEVKILQEKAG 676
Query: 820 NAYATKISKDQLTKTTAQALACTVTTTWFGFYRL-WRGSGIIFDTVELYLPKYSYESQAV 878
Y ++ T VT GF R GS + D + +P ++A+
Sbjct: 677 VRYEFDGAQPGTAGLTMHRGRVQVTDQVMGFQRFSVYGSEYLGDE-PMEMPPSILMTEAI 735
Query: 879 WIQVPQSVKAVVEQNFSFRSG---------LHAASHALLHVVPIYVRCNFSDLAPECPNP 929
W E ++ F +G LHAA HA + ++P+ C+ DL
Sbjct: 736 WF--------TFEPSYLFAAGVTEPDAPGTLHAAEHAAIGLLPLIATCDRWDLGGLSTLY 787
Query: 930 HDSRYFPERILLYDRHPGGTGVSKQ 954
H P I +YD PGG G +++
Sbjct: 788 HADTERPT-IFVYDAAPGGAGFTQR 811
>gi|345005796|ref|YP_004808649.1| hypothetical protein [halophilic archaeon DL31]
gi|344321422|gb|AEN06276.1| Protein of unknown function DUF1998 [halophilic archaeon DL31]
Length = 779
Score = 327 bits (837), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 228/730 (31%), Positives = 354/730 (48%), Gaps = 62/730 (8%)
Query: 245 KSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLE-ALSHDLSSSA 303
+S L GI + + HQ+E+I A AG + V+AT T+SGKSL Y +P E A+ H
Sbjct: 41 ESTLAERGIEQPFRHQSEAIRAVRAGNDAVLATETASGKSLAYTVPAFENAMDH--GGRT 98
Query: 304 LYMFPTKALAQDQLRAL--LAMTKAFDASIDIGVYDGDTTQKDRMWLRDN-ARLLITNPD 360
LY+ P AL DQL L LA F + + + Y G + ++ +RD +L++NPD
Sbjct: 99 LYLGPQNALVADQLETLTELARDLGFGSRVSVEQYTGRLAKSEKQDVRDRRPTILLSNPD 158
Query: 361 MLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTAL 420
M+H ++LP+ RL + F + VV+DE H+Y+G FG H ++
Sbjct: 159 MVHYALLPH---------AHRLWEW---------FFKSLELVVVDEVHSYRGIFGSHVSM 200
Query: 421 ILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELAN--LSTLELIQNDGSPCAQKLFV 478
+LRRL R+C YG+DP+ V +AT NP +H + S L+ D S + +V
Sbjct: 201 LLRRLNRVCER-YGADPTVVCCSATIGNPVDHAARVTGHGPSRFSLVDQDYSGTGPRDWV 259
Query: 479 LWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLC 538
LWNP + Q D R ++ T S LF ++V+ G + + F RSR+
Sbjct: 260 LWNPP--------EYQRDRGSGRRRSSHTES-----MRLFVDLVEEGYQTLVFTRSRQTA 306
Query: 539 E-LVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGI 597
E ++E+ + L + Y+ + RR +E G L GV +TNALELG+
Sbjct: 307 ERYATQSSKELRSRGSNALAGKVQAYQGSLTDDRRRELETRLHDGDLRGVWSTNALELGV 366
Query: 598 DVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSP 657
DVG +D + G+PG+ S +QQAGR+GR E +L + VA E LDQY M P + F+
Sbjct: 367 DVGGLDAVIIDGYPGTRMSAFQQAGRAGRGEEAALVIVVAGEDQLDQYLMCNPAEFFEGE 426
Query: 658 IECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLD 717
E + +N ++L H+ AA E+ LS DE++FG ++ L+ G L +
Sbjct: 427 PEQAISNPENEELLPDHVASAAAENWLS-DDDERHFGEPFPGVVSALEGEGVLERRDT-- 483
Query: 718 SSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMH 777
S+ + + G E P H +S+R I+ ++ + +S + + + S A + GA+Y H
Sbjct: 484 SNGTRWTHSG-EGSPQHRMSLRTIDDREVDLRESRSGDKIASLSFSDALRDAHPGAIYHH 542
Query: 778 QGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQ 837
QG TY V EL+L +A Q Y T+ D+ V D T +
Sbjct: 543 QGQTYEVSELDLDRDVATVQPTWADYHTRVLTEKDVVVHEELREKPLSARPD----TAVR 598
Query: 838 ALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVV------- 890
VT GF R SG T L LP+ S ++ ++ VP V+ +
Sbjct: 599 FADIEVTERVTGFERQDAASGETLGTQLLELPETSLRTKGLFWTVPDDVEQEMRTLAAEH 658
Query: 891 -EQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAP-ECP-NPHDSRYFPERILLYDRHPG 947
+ + F G HAA H ++ + P+Y+ C+ D+ P +PH + I +YD +PG
Sbjct: 659 GDPEYGFNGGTHAAEHGVISLFPLYMLCDRGDVGGLSTPMHPHTDQ---STIFVYDGYPG 715
Query: 948 GTGVSKQVTD 957
G G++ + D
Sbjct: 716 GVGLTNRGYD 725
>gi|335437535|ref|ZP_08560311.1| DEAD/DEAH box helicase domain protein [Halorhabdus tiamatea SARL4B]
gi|334895883|gb|EGM34046.1| DEAD/DEAH box helicase domain protein [Halorhabdus tiamatea SARL4B]
Length = 771
Score = 326 bits (836), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 224/744 (30%), Positives = 358/744 (48%), Gaps = 52/744 (6%)
Query: 217 QGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVA 276
+GQ+V + R+A ++ + D +AL S G+ + Y HQAE+I A G+NVV+A
Sbjct: 15 EGQIVDERRLPGREATDADL--DVSDRLAAALSSDGVDRFYRHQAEAIEAVRDGENVVLA 72
Query: 277 TMTSSGKSLCYNLPVLE-ALSHDLSSSALYMFPTKALAQDQLRAL--LAMTKAFDASIDI 333
T T+SGKSL Y +P E A+ H + LY+ P AL DQ L LA + F + + +
Sbjct: 73 TPTASGKSLAYTVPAFERAMDH--VGTTLYIAPQVALINDQAETLSDLAHSLGFGSRVTV 130
Query: 334 GVYDGDTTQKDRMWLRD-NARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEV 392
Y G +Q ++ +R+ +L+T PDMLH I+P+ RL +
Sbjct: 131 DRYTGRLSQSEKETVRERQPTVLLTTPDMLHYGIMPH---------AHRLWDW------- 174
Query: 393 YLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREH 452
F + +V+DE HAY+G FG H +L+LRRL RL + +DP +V +AT NP EH
Sbjct: 175 --FFERLETIVVDEVHAYRGVFGSHVSLVLRRLNRLAER-FDADPQYVCCSATIGNPVEH 231
Query: 453 CMELANL--STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSP 510
+ N ++ L+ D S + +V+WNP + S
Sbjct: 232 AATVTNQPEASFRLLTEDDSATGPRQWVVWNPPEKRGG-------------GGQGRRRSH 278
Query: 511 ISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYT-REILEETAPHLVDSICVYRAGYVA 569
E LFA++VQ GL+ + F SR++ E + + R++ E L I Y+A +
Sbjct: 279 HVETERLFADLVQRGLQTVVFTGSRQVAERYATESGRKLRERGEGELATKIGAYQAALTS 338
Query: 570 EDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRER 629
+ RR +E G + GV +T+ALELG+DVG +D + G+PG+ +Q+AGR+GR E
Sbjct: 339 DRRRELEAGLHDGSIRGVWSTSALELGVDVGGLDAVILDGYPGTRMETFQRAGRAGRGED 398
Query: 630 PSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYD 689
P+L V E LDQY ++PE LF E + N ++L H+ AA E+ LS D
Sbjct: 399 PALVALVTGEDQLDQYVARHPESLFDRAPEQALTNPANDQILPAHVRSAARENWLS-PDD 457
Query: 690 EKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVI 749
+++FG + L+ G L + D+ + + G P+H S+R+ + ++
Sbjct: 458 DRHFGPTFPDVVADLEAAGDLERR-ATDAGIRWLDDGG--GSPAHETSLRSADDREIKLR 514
Query: 750 DMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRD 809
+ SN+V+ + A + GA+Y HQG Y V EL+LS +A + +T+
Sbjct: 515 ERGSNDVIASLPFGDALRDAHPGAIYHHQGTKYEVVELDLSHDVATLDRTYADQYTRVLH 574
Query: 810 YTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLP 869
I V D + + +T GF R SG L +P
Sbjct: 575 EKTITVEEDLREKPFPGRADVPVRFAEVTMRKQIT----GFERHDARSGEAISRESLDVP 630
Query: 870 KYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNP 929
+ S ++A++ + ++ + N F G+HAA HA++ +P+ C+ D+ P
Sbjct: 631 ETSLRTRALYYALDPDLEEELRANGDFPGGIHAAEHAMIATMPLSFLCDRRDIG-GVSTP 689
Query: 930 HDSRYFPERILLYDRHPGGTGVSK 953
H I +YD +PGG G+++
Sbjct: 690 HHPHTDRSTIFIYDGYPGGVGIAR 713
>gi|311112129|ref|YP_003983351.1| ATP-dependent helicase family protein [Rothia dentocariosa ATCC
17931]
gi|310943623|gb|ADP39917.1| ATP-dependent helicase family protein [Rothia dentocariosa ATCC
17931]
Length = 896
Score = 326 bits (835), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 235/805 (29%), Positives = 376/805 (46%), Gaps = 110/805 (13%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMAS----------- 267
Q+ HV I AR+ P L A +S G+ K Y+HQ ++ A+
Sbjct: 68 QITHVHRIPAREGQYSPWPHWLHPRVIEAFESLGVHKPYTHQVQAAQAAHCAFDAALAED 127
Query: 268 ------------------LAGKNVVVATMTSSGKSLCYNLPVLEAL------------SH 297
++V+VAT T+SGKSL Y +P +AL +
Sbjct: 128 AHRLSFGRASGQGHDESGTTARHVIVATGTASGKSLSYLMPAFDALYRGAHREPLSTTAA 187
Query: 298 DLSSSA-------LYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRD 350
D SS+ LY+ P +AL+ DQL A+ A ++ YDGDT ++R W+R+
Sbjct: 188 DTSSTGFHQRANVLYISPARALSADQLNAITAYHLP---GLNAATYDGDTPAQERRWVRE 244
Query: 351 NARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAY 410
+A ++T PDML+ IL H Q++ L LR +VV+DE H+Y
Sbjct: 245 HANFVLTTPDMLNYGILGNHRQWANFLRGLR-------------------YVVLDEVHSY 285
Query: 411 KGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL--STLELIQND 468
+G FG H A +LRRL R+C+ +Y P F ++ATSANP E +L + ++ I
Sbjct: 286 RGVFGAHIANLLRRLRRVCA-LYRVSPVFYGASATSANPAESFAKLIGVPEGNVDAITTS 344
Query: 469 GSPCAQKLFVLWNPTSCLRS-VLNKSQTDMD--DTRNAANKTS----SPISEVSYLFAEM 521
+P + +LW P + V +K DTR+ A K + S I + + + ++
Sbjct: 345 TAPRGESTVILWEPEFLPDTQVTDKLAVGASAFDTRSEAEKQAPQRISAIEQGAQMLTDL 404
Query: 522 VQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFG 581
V R +AF RSR+ EL+ + L+ET L + YR+GY+ E+RR +E
Sbjct: 405 VLSRTRTLAFTRSRRGAELISQRAQRYLDETEAGLAHRVAAYRSGYMPEERRELEHRLRT 464
Query: 582 GKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGP 641
G+L G+A+T+ALELGID+ +D L G+PG+ AS Q+ GR+GR + +LAV +A + P
Sbjct: 465 GELLGLASTSALELGIDISGLDAVLVAGWPGTRASFIQRIGRAGRGGQDALAVLIAGDDP 524
Query: 642 LDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGI 701
LD Y + +P+ +F +E D N VL HL AA E PL + FG + +
Sbjct: 525 LDTYLVHHPQAIFGQSVEATVFDPTNPYVLSPHLCAAAAESPLR-AEELSLFGEHTEALL 583
Query: 702 TTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIE 761
L + YL Y H + ++ + +RA Y++ID + ++ ++
Sbjct: 584 NRLVQQNYLRRRAD-------GWYWTHAESATNLVDLRATGGGPYQLIDAEDGSLIGTMD 636
Query: 762 ESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHV--SGGN 819
++A Q + GA+Y+HQ YLV+ L+ ++++ L + Y+T+ + T++ +
Sbjct: 637 SAQAMTQGHPGAIYIHQNAQYLVESLDEAARVILLSRVYPDYYTRAIEATEVKILQEKAG 696
Query: 820 NAYATKISKDQLTKTTAQALACTVTTTWFGFYRL-WRGSGIIFDTVELYLPKYSYESQAV 878
Y ++ T VT GF R GS + D + +P ++A+
Sbjct: 697 VRYGFDGTQPDTAGLTLHRGRVQVTDQVMGFQRFSVYGSEYLGDE-PMEMPPSILMTEAI 755
Query: 879 WIQVPQSVKAVVEQNFSFRSG---------LHAASHALLHVVPIYVRCNFSDLAPECPNP 929
W E ++ F +G LHAA HA + ++P+ C+ DL
Sbjct: 756 WF--------TFEPSYLFAAGVAEPDAPGTLHAAEHAAIGLLPLIATCDRWDLGGLSTLY 807
Query: 930 HDSRYFPERILLYDRHPGGTGVSKQ 954
H P I +YD PGG G +++
Sbjct: 808 HADTERPT-IFVYDAAPGGAGFTQR 831
>gi|300742211|ref|ZP_07072232.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Rothia
dentocariosa M567]
gi|300381396|gb|EFJ77958.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Rothia
dentocariosa M567]
Length = 837
Score = 325 bits (834), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 232/797 (29%), Positives = 376/797 (47%), Gaps = 94/797 (11%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMAS----------- 267
Q+ HV I AR+ P L A +S G+ K Y+HQ ++ A+
Sbjct: 13 QITHVHRIPAREGQYSPWPHWLHPRVIEAFESLGMHKPYTHQVQAAQAAHCAFDAALAED 72
Query: 268 ------------------LAGKNVVVATMTSSGKSLCYNLPVLEAL-----SHDLSSSA- 303
++V+VAT T+SGKSL Y +P +AL LS++A
Sbjct: 73 VHRLSFGRASGQGHDESDTTARHVIVATGTASGKSLSYLMPAFDALYRGARREPLSATAT 132
Query: 304 -------------LYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRD 350
LY+ P +AL+ DQL A+ A ++ YDGDT ++R W+R+
Sbjct: 133 NAGSTGFHQRANVLYISPARALSADQLNAITAYHLP---GLNAATYDGDTPAQERRWVRE 189
Query: 351 NARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAY 410
+A ++T PDML+ IL H Q++ L LR +VV+DE H+Y
Sbjct: 190 HANFVLTTPDMLNYGILGNHRQWANFLRGLR-------------------YVVLDEVHSY 230
Query: 411 KGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL--STLELIQND 468
+G FG H A +LRRL R+C+ +Y +P F ++ATSANP E +L + ++ I
Sbjct: 231 RGVFGAHIANLLRRLRRVCA-LYRVNPVFYGASATSANPAESFAKLIGVPEGNVDAITAS 289
Query: 469 GSPCAQKLFVLWNPTSCLRS-VLNK--SQTDMDDTRNAANKTS----SPISEVSYLFAEM 521
+P + +LW P + V +K + DTR+ A K + S I + + + ++
Sbjct: 290 TAPRGESTVILWEPEFLPDTQVTDKLAAGASAFDTRSEAEKQAPQRISAIEQGAQMLTDL 349
Query: 522 VQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFG 581
+ R +AF RSR+ EL+ + L+E+ L + YR+GY+ E+RR +E
Sbjct: 350 ILSRTRTLAFTRSRRGAELISQRAQRYLDESEAGLAHRVAAYRSGYMPEERRELEHRLRT 409
Query: 582 GKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGP 641
G+L G+A+T+ALELGID+ +D L G+PG+ AS Q+ GR+GR + +LAV +A + P
Sbjct: 410 GELLGLASTSALELGIDISGLDAVLVAGWPGTRASFIQRIGRAGRGGQDALAVLIAGDDP 469
Query: 642 LDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGI 701
LD Y + +P+ +F +E D N VL HL AA E PL + FG + +
Sbjct: 470 LDTYLVHHPQAIFGRSVEATVFDPTNPYVLSPHLCAAAAESPLR-AEELSLFGEHTEALL 528
Query: 702 TTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIE 761
L + YL Y H + ++ + +RA Y++ID++ ++ ++
Sbjct: 529 NRLVQQNYLRRRAD-------GWYWTHAESATNLVDLRATGGGPYQLIDVEDGSLIGTMD 581
Query: 762 ESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHV--SGGN 819
++A Q + GA+Y+HQ YLV+ L+ ++++ L + Y+T+ + T++ +
Sbjct: 582 SAQAMTQGHPGAIYIHQNAQYLVESLDEAARVILLSRVYPDYYTRAIEATEVKILQEKAG 641
Query: 820 NAYATKISKDQLTKTTAQALACTVTTTWFGFYRL-WRGSGIIFDTVELYLPKYSYESQAV 878
Y ++ T VT GF R GS + D + +P ++A+
Sbjct: 642 VRYGFDGTQPGTAGLTMHRGRVQVTDQVMGFQRFSVYGSEYLGDE-PMEMPPSILMTEAI 700
Query: 879 WIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPE 937
W P + A LHAA HA + ++P+ C+ DL H P
Sbjct: 701 WFTFDPSYLFAASVTEPDIPGTLHAAEHAAIGLLPLIATCDRWDLGGLSTLYHADTERPT 760
Query: 938 RILLYDRHPGGTGVSKQ 954
I +YD PGG G +++
Sbjct: 761 -IFVYDAAPGGAGFTQR 776
>gi|336321716|ref|YP_004601684.1| hypothetical protein Celgi_2617 [[Cellvibrio] gilvus ATCC 13127]
gi|336105297|gb|AEI13116.1| Protein of unknown function DUF1998 [[Cellvibrio] gilvus ATCC
13127]
Length = 809
Score = 325 bits (833), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 243/771 (31%), Positives = 368/771 (47%), Gaps = 77/771 (9%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATM 278
+ HV + AR+ P + ++ GI + HQ ++ A+ G++ V+AT
Sbjct: 22 RATHVRHLPAREGRRGAWPAWADADLVRGYRALGIEAPWQHQVQAAQAARDGRHTVLATS 81
Query: 279 TSSGKSLCYNLPVLEAL---------------SHDLSSSALYMFPTKALAQDQLRALLAM 323
T SGKSL Y LP L A+ + + LY+ PTKALA DQL AL +
Sbjct: 82 TGSGKSLAYWLPALTAVRERRAAGTLDPGRIETAQRQAGVLYLCPTKALAADQLAALERL 141
Query: 324 TKAFDA-SIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRL 382
A + + DGDT+Q +R W+RD+A +++TNPD LH S+LP H ++SR+L++L+
Sbjct: 142 LAAAQVRDVRVAQCDGDTSQDERRWIRDHADVVLTNPDFLHFSLLPQHQRWSRLLASLQ- 200
Query: 383 IAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFS 442
+VV+DE HA++G FG H AL+LRRL + YG+ P FV +
Sbjct: 201 ------------------YVVLDECHAFRGVFGAHVALVLRRLR-RLAEAYGASPVFVLA 241
Query: 443 TATSANPREHCMELANLST--LELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQT----- 495
+AT+A+P L + +E + +D SP +K VLW P +
Sbjct: 242 SATTADPAASAARLLGVDPDEVEAVTDDASPAGRKTVVLWQPPELPGRGPDSGAPWASLL 301
Query: 496 -DMDDTRNAANKTSSP----ISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILE 550
D D P +E++ L A++V HG R +AF RSR+ E V + TRE +
Sbjct: 302 PDEDPWATPGEPEDRPRRTATAEIADLLADLVAHGARSLAFTRSRRAAESVATTTREHVG 361
Query: 551 ETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGF 610
P L ++ YR GY+ E+RR +ER G L +A TNALELG+D+ +D L G+
Sbjct: 362 ALDPALRGAVQAYRGGYLPEERRGLERAIRDGSLRALATTNALELGVDISGLDAVLIAGW 421
Query: 611 PGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKV 670
PG+ S WQQAGR+GR L VA E PLD Y + +PE + +P+E D N V
Sbjct: 422 PGTRVSFWQQAGRAGRAGADGLVALVAREDPLDTYLVHHPEAVLDAPVEATTFDPGNPYV 481
Query: 671 LEQHLVCAALEHPLSLIYDE-KYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHE 729
L HL AA E P+ DE FG ++ + L G L S Y H
Sbjct: 482 LAPHLCAAAAERPVR--ADELALFGPRAAAVLEELTEHGVLRRRAS-------GWYWTHA 532
Query: 730 KMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNL 789
+ S +R + V++ + VL ++ + + ++ GAVY+HQG T++V +L+
Sbjct: 533 EPASRLTDLRGAGGDPVRVVESGTGRVLGTVDAASSDATLHPGAVYVHQGATFVVDDLHA 592
Query: 790 SSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACT-VTTTWF 848
+ +AL + ++ Y T R T V + ++ A L VT+
Sbjct: 593 ADHVALVTRREVDYGTWARWLTTTAV--------VDVRDERAWGPVAWHLGTVDVTSQVL 644
Query: 849 GFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSG-LHAASHAL 907
GF R + +L LP + + +VW VP SV G LHAA HA
Sbjct: 645 GFQRKHLPDLQVLGYEDLELPPRTLRTTSVWWTVPASVLEEAGVTLEALPGALHAAEHAS 704
Query: 908 LHVVPIYVRCNFSDLAPEC----PNPHDSRYFPERILLYDRHPGGTGVSKQ 954
+ ++P+ C+ DL P+ ++ F ++D HPGG G +++
Sbjct: 705 IGLLPLLATCDRWDLGGLSTALHPDTGEATVF-----VHDAHPGGAGFAER 750
>gi|258516672|ref|YP_003192894.1| DEAD/DEAH box helicase [Desulfotomaculum acetoxidans DSM 771]
gi|257780377|gb|ACV64271.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum acetoxidans
DSM 771]
Length = 896
Score = 324 bits (831), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 231/756 (30%), Positives = 359/756 (47%), Gaps = 67/756 (8%)
Query: 212 KGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGK 271
KG+ Q ++++ ++ +R A P L ++ L GISKLYSHQA++I L G+
Sbjct: 3 KGL-DQKLIMNIHELPSRDATYANFPSGLKEDLVRGLAVNGISKLYSHQAKAIEQILLGR 61
Query: 272 NVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASI 331
N+++ T TSSGKSL Y +P + + ++ S+ LY+ P KAL+Q+Q + + K +
Sbjct: 62 NLIITTGTSSGKSLVYIVPAINCILNNSLSTVLYLSPAKALSQNQYQNIEKFCKKILWPV 121
Query: 332 D---IGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLV 388
I V DGDT ++R + + + ++ + PD H S L H + LSNL+LI
Sbjct: 122 SAPVISVCDGDTPLEERREILNRSNIIFSTPDFWHSSGLSRHIHWPGFLSNLQLI----- 176
Query: 389 TTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSAN 448
+IDEAH Y+G+ G H + +LRRL RLC H YGS P F+ +AT AN
Sbjct: 177 --------------IIDEAHIYRGSLGNHVSHVLRRLRRLCYH-YGSYPRFILCSATIAN 221
Query: 449 PREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTS 508
E L L + LI +GS A+K FV NP D ++ K
Sbjct: 222 ALEFAENLTGLDFV-LIDKEGSHSAKKNFVFINPPQ------------YQDKNSSQIKRK 268
Query: 509 SPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYV 568
E + + V+ G R I F RS+++ E S R+++EE P + + Y+
Sbjct: 269 LSHYEAARIVGNYVRTGRRVINFGRSKQVVE---SAYRKLIEEY-PDIAGQVRPYKGTLT 324
Query: 569 AEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRE 628
E RR IE F G L G+ +TNALELG+D+G +DV + GFPGSI+S+WQQAGR GRR
Sbjct: 325 PETRREIEGKLFDGMLKGIISTNALELGVDIGDLDVCVMSGFPGSISSVWQQAGRVGRRG 384
Query: 629 RPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIY 688
+ SL V+VA + PLDQY ++ PE F E ++ N L +HL+ AA E P+ ++
Sbjct: 385 KESLVVFVAGDDPLDQYLIRKPEYFFSRLCEKAVVNPNNLSFLSEHLLAAAAELPI-VVE 443
Query: 689 DEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAI----ESE 744
D KY+G+ L + L+ G + E IG +K ++A +S
Sbjct: 444 DRKYWGNILDKAVLLLRGSGLIR-----------LERIGEQKTYRLNCRMQAFSLRGDSP 492
Query: 745 RYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYF 804
Y +I ++ +++ +Y GA+++ G Y V + SK + + +
Sbjct: 493 NY-LIKTENGKIIGRTNYDDVLLLLYPGAIFLQMGRQYRVLRVEEKSKEVIAAECAFSWR 551
Query: 805 TK-TRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSG-IIFD 862
K TR +V+ ++++ KD + L T F Y G G
Sbjct: 552 NKRTRPSIRANVAIEQLEASSQV-KD--VRVNTGILTVKRQTEGFTLYEYRYGKGESKLS 608
Query: 863 TVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDL 922
+ LP ++ +W+++ + + S LH H L V+P V C +D+
Sbjct: 609 QHSVDLPAVDLKTVGIWLEIGSETVNRLGGD-SLLLALHGVEHLLRVVLPWKVMCERNDI 667
Query: 923 APECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDM 958
+ LYD +PGG G + +M
Sbjct: 668 GAYIAGHGKD---GATLFLYDIYPGGVGYCEAAFNM 700
>gi|169830981|ref|YP_001716963.1| DEAD/DEAH box helicase [Candidatus Desulforudis audaxviator MP104C]
gi|169637825|gb|ACA59331.1| DEAD/DEAH box helicase domain protein [Candidatus Desulforudis
audaxviator MP104C]
Length = 685
Score = 323 bits (829), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 225/733 (30%), Positives = 357/733 (48%), Gaps = 76/733 (10%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+V V + AR A L + +S L+ I +LY+HQAE + + +NVV+ T T
Sbjct: 20 VVGVLETPARDAAYRNPFPPLPEPIRSYLERESI-ELYTHQAEVLERARKKQNVVLTTAT 78
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGD 339
+SGKSL + LPVLE L + ++ALY++P KALA DQL L + + + + VYDGD
Sbjct: 79 ASGKSLAFTLPVLEQLYQNPGATALYLYPMKALAYDQLSFLRKLERETGIAYNPAVYDGD 138
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T Q R +R +R+++TNP LH L +H + R L+
Sbjct: 139 TPQLHRKQIRQESRIVLTNPHALH-RYLSWHKLWQRFFRGLQ------------------ 179
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
+V+IDE H Y+G +G H A + RRL R+ H YG+ P + ++AT A+P +H L
Sbjct: 180 -YVIIDEGHWYRGLYGSHVAFVFRRLLRVLEH-YGATPQIILASATMADPAKHGRNLTG- 236
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
++ DGS ++K++VLW+ AA K+ + + LFA
Sbjct: 237 KDFSVVDGDGSARSKKIYVLWDAV-------------------AAGKSEH--LQAAELFA 275
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDF 579
V GL+ I F SRKL L + A V + YRAGY+ E+RR +E
Sbjct: 276 ACVGSGLQAICFAPSRKLAVLTARW--------AGQKVAGVASYRAGYLPEERRELESRL 327
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFE 639
G++ GVA TNALELG+++G +D + G+PG++AS QQAGR GR + SL V + F
Sbjct: 328 RSGEIRGVACTNALELGVNIGELDAAIISGWPGTVASFRQQAGRVGRSGQESLVVQIFFS 387
Query: 640 GPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSS 699
PLD Y ++ PE +F++ E + + ++L+ H+ CAA E PL+ DEKYFG
Sbjct: 388 NPLDGYLLRNPELIFRASSEQAVVALDHFEILKAHIRCAAEELPLT-AGDEKYFGPRYKD 446
Query: 700 GITTLKNRGYLSSD-----PSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN 754
+ TL + D P ++ I Y+ K + +S+ A + + +
Sbjct: 447 AVRTLIKEKSIVLDSQGWQPGRETCV-IKRYVSAGKNVASRVSLSAFDEGAMRL--LHDG 503
Query: 755 EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIH 814
+LE + S+A + GAVY+H+G Y V+E + I +++ + +T+ + +T I
Sbjct: 504 RLLETLSLSRACRDAHPGAVYLHRGEPYEVREFDPGRGIVTVERSSGELYTQAQVHTAI- 562
Query: 815 VSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYE 874
Y + + + + V + Y + + +I + +P + +
Sbjct: 563 -------YPRQTLQTREFPGVVLNVGRVVVSQKTRGYLVKKYDEVIGRHILEGMPSVNLD 615
Query: 875 SQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRY 934
+ A W+Q+ Q + + + GLHAA H L+ V P+ C+ D+ P D
Sbjct: 616 TVAAWLQL-QRIPLIAD----LEGGLHAAEHTLIAVAPLVAMCDRWDIG-GVSLPRDRDG 669
Query: 935 FPERILLYDRHPG 947
P I +YD PG
Sbjct: 670 MPA-IYVYDDFPG 681
>gi|297627203|ref|YP_003688966.1| helicase [Propionibacterium freudenreichii subsp. shermanii
CIRM-BIA1]
gi|296922968|emb|CBL57550.1| helicase [Propionibacterium freudenreichii subsp. shermanii
CIRM-BIA1]
Length = 820
Score = 322 bits (824), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 213/667 (31%), Positives = 321/667 (48%), Gaps = 80/667 (11%)
Query: 294 ALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDA-SIDIGVYDGDTTQKDRMWLRDNA 352
AL ++ALY+ PTKALA DQ+RA + F +G DGD+ +R + R+ A
Sbjct: 166 ALGLKQGATALYLAPTKALAHDQMRA----ARTFGPKGWQVGCLDGDSDAAERRFAREQA 221
Query: 353 RLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKG 412
+++TNPDM+H ++LP H +++R+LS LR +VVIDEAH Y+G
Sbjct: 222 DMVLTNPDMVHHALLPGHARWARLLSGLR-------------------YVVIDEAHRYRG 262
Query: 413 AFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMEL-ANLSTLELIQNDGSP 471
FG ++RRL RLC H YGSDP F+ ++AT+++ E L + + +D SP
Sbjct: 263 VFGAQVGGVIRRLRRLC-HAYGSDPVFILASATASHAGESGAALIGEPEPIAEVNDDASP 321
Query: 472 CAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAF 531
+ VLW P S S + + + A +V G + IAF
Sbjct: 322 HPARDVVLWRPES------------------------SAYDDAAKILAGLVDQGRQTIAF 357
Query: 532 CRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATN 591
SR CEL+ +E +I YR+GY+A DRR+IE G+L GV+ATN
Sbjct: 358 VASRAQCELMAVRAKEKSRSG-----RAIASYRSGYLAMDRRQIEAGLQSGRLFGVSATN 412
Query: 592 ALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPE 651
ALELG+DV +D + GFPG++ASLWQQAGR+GR +R +L V V E PLD Y +PE
Sbjct: 413 ALELGVDVAGMDAVVICGFPGTLASLWQQAGRAGRADRDALVVAVQREDPLDAYLFAHPE 472
Query: 652 KLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLS 711
+F +PIE + N VL L AA E PL+ D ++FG ++ L G L
Sbjct: 473 LIFSAPIERTVLFPDNPHVLGPQLAAAAQEAPLTPA-DARWFGPTMAGLCEQLCAAGLLR 531
Query: 712 SDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYE 771
+ Y + I +R + ++I+ S V+ +++ + A VY
Sbjct: 532 RRAT-------GWYWPRPERAVDAIDLRGTGGKPLDIIEEDSGRVIGQVDMAAADHSVYP 584
Query: 772 GAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQL 831
GAVY+HQG +LV + + AL + YFT+ R + +I +
Sbjct: 585 GAVYLHQGEQFLVDAYHPERREALVNRRRPGYFTQPRTIIE-----------ARILHEDA 633
Query: 832 TKTTAQALACT----VTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVK 887
K+ + CT +TT G+ R + ++D L LP ++AVW VP+ V
Sbjct: 634 HKSLGRTTVCTGDIDLTTQVTGYLRRDEVTTQVWDENPLELPVQRMGTKAVWWTVPEDVA 693
Query: 888 AVVE-QNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHP 946
A V + HA H + ++P + C+ D+ H I+++D
Sbjct: 694 AEVGLSAIKLANAAHAMEHTAIGLLPGFAPCDRWDIGGVSMMVHPDTELCT-IIVHDGQA 752
Query: 947 GGTGVSK 953
GG+G ++
Sbjct: 753 GGSGFAR 759
Score = 47.0 bits (110), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 43/73 (58%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
++HV+ A E P+ L + + +++ G+ + HQ E+ + AG++V ++T T
Sbjct: 13 VLHVDHRDALPGTTAEWPEWLSADCVATIRAAGVPLPWRHQREAAELAHAGRHVALSTPT 72
Query: 280 SSGKSLCYNLPVL 292
+SGK+L Y LP++
Sbjct: 73 ASGKTLAYLLPLM 85
>gi|448632087|ref|ZP_21673615.1| ATP-dependent helicase [Haloarcula vallismortis ATCC 29715]
gi|445754195|gb|EMA05606.1| ATP-dependent helicase [Haloarcula vallismortis ATCC 29715]
Length = 786
Score = 322 bits (824), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 237/764 (31%), Positives = 361/764 (47%), Gaps = 56/764 (7%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E V+ +R Q+ ++I AR+ P + + L GI + Y+HQAE+I
Sbjct: 3 EFVDWVRHRDYYHNQIQFQQEIPARRPETR--PCEMDPEVTAQLADLGIDEPYAHQAEAI 60
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLE-ALSHDLSSSALYMFPTKALAQDQLRALLAM 323
A G+N V+AT T+SGKSL Y +P +E A HD LY+ P AL DQ L A
Sbjct: 61 DAIRRGQNAVLATPTASGKSLTYTIPAIERARDHD--GRTLYIGPQVALINDQEATLSAF 118
Query: 324 TKAFDASIDIGVYDGDTTQKDRMWLRD-NARLLITNPDMLHMSILPYHGQFSRILSNLRL 382
+ FD + + Y G + +R RD + L++T PDMLH +L + R
Sbjct: 119 AEPFD-DVSVTQYTGALSGPERQEARDEDPSLVLTTPDMLHCGLLSHADDIWRTF----- 172
Query: 383 IAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFS 442
F + FVV+DE H Y+G FG H L+LRRL RLC + +DP FV
Sbjct: 173 -------------FESLDFVVVDEVHEYRGVFGSHVGLVLRRLTRLCEQ-FDADPQFVCC 218
Query: 443 TATSANPREHCMELANLST--LELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDT 500
+AT NPREH + T L+ D S ++ W P + D D
Sbjct: 219 SATIGNPREHAATITGQPTESFALVDEDTSETGPTHWLFWQP----------PKYDEGDA 268
Query: 501 RNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAP-HLVDS 559
A + S E LF ++VQ G + +AF R+R+ E + + + L E L +S
Sbjct: 269 PAGAGQRRSHHGETMRLFVDLVQRGYQTVAFTRARQTAERYATISSDTLAERGKGDLAES 328
Query: 560 ICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQ 619
+ Y AG + R RIE + GV +T+ALELG+D+G +D L G+PG+ S +Q
Sbjct: 329 VTAYHAGLRDDRRARIEAALHTDECAGVWSTSALELGVDIGSLDAVLLDGYPGTQMSTFQ 388
Query: 620 QAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAA 679
+AGR+GR PSL VA E LDQY + +P +LF+ E D N +L+ H AA
Sbjct: 389 RAGRAGRGTDPSLVALVASEDQLDQYVINHPGELFEGTPERAIADPSNPHLLQLHTHAAA 448
Query: 680 LEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIR 739
+E PL D++YFG ++ L + G LS + D G P + +R
Sbjct: 449 IEQPLRTT-DKRYFGPAFPDIVSALTDDGELSRRQTADGLEWRRTASGRTVNP-YERGLR 506
Query: 740 AIESERYEVIDM---QSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIA-- 794
I ++R V+ + QS+E L E+ A V+ GA+Y HQG +Y V+ L+L S +A
Sbjct: 507 TI-TDRTVVLRVRGGQSDE-LGELPLDAALRDVHPGAIYHHQGQSYEVQSLDLGSDVAWL 564
Query: 795 LCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLW 854
+ ++D + + + I AT+ T T GF R
Sbjct: 565 VPTESDQQTRVQFEESMTIEEDIATKPLATR------EDVTVHFADVTRRKQVTGFQRRD 618
Query: 855 RGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVE-QNFSFRSGLHAASHALLHVVPI 913
+G I L LP+ + ++A+++ +P ++ +++ + SF GLHA HAL+ P+
Sbjct: 619 HRTGEILREESLDLPETTLSTRALYLTLPPGLERLMQTMSGSFDGGLHAVQHALVATFPL 678
Query: 914 YVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTD 957
+ C+ D+ H + + +YD + GG G+++ D
Sbjct: 679 VILCDRRDVGSVSTTDH-PQTETSALFIYDGYQGGVGLARNGYD 721
>gi|374629947|ref|ZP_09702332.1| DEAD/DEAH box helicase domain protein [Methanoplanus limicola DSM
2279]
gi|373908060|gb|EHQ36164.1| DEAD/DEAH box helicase domain protein [Methanoplanus limicola DSM
2279]
Length = 855
Score = 322 bits (824), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 224/759 (29%), Positives = 368/759 (48%), Gaps = 71/759 (9%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
+ + L+K G + +V E + KA P + LK I+ LYSHQ E+I
Sbjct: 108 DAITALKKNPGFKRGIV-AEKVIEEKAPSYRSPHGVEMGIYEFLKDNSIN-LYSHQTEAI 165
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMT 324
+++ KNV++ T T+SGK+L + +PVL ++ + +S AL ++PTKAL DQL+A+ +
Sbjct: 166 EYAVSKKNVIITTPTASGKTLAFLIPVLNSIIKNPASRALLIYPTKALISDQLKAIREIA 225
Query: 325 KAFDASIDIGVYDGD-TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLI 383
+ I + YDGD + + R + ++ITNPDML+ +ILP+H ++ + S+L
Sbjct: 226 QKILPGIFVEKYDGDLNSDERRRIRQRRPSIVITNPDMLNAAILPHHQSWNFLFSSL--- 282
Query: 384 AFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFST 443
+VV+DEAH Y+G FG H AL+ RRL RL S Y S+P+F+ S+
Sbjct: 283 ----------------DYVVMDEAHTYRGVFGSHIALLTRRL-RLISAKYRSNPAFILSS 325
Query: 444 ATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNA 503
AT ANP EH L ++ GS +K F+ +
Sbjct: 326 ATIANPVEHAKNLTG-GDFVMVNKSGSKQNEKRFIFFK---------------------- 362
Query: 504 ANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVY 563
SP+ + + + A + G++ + F R+RK EL+ ++ + + I Y
Sbjct: 363 GGDRISPVDQTAQMLAFLSLAGIQTLCFARTRKSTELIADAAKQEIRKRNYGSKPEIVSY 422
Query: 564 RAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGR 623
R+GY ++R RIE D G+ GV +TNALELGID+G +D + G+PGS+ S WQQAGR
Sbjct: 423 RSGYRYDERARIESDIKSGRAAGVCSTNALELGIDIGSLDCVIISGYPGSVMSTWQQAGR 482
Query: 624 SGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHP 683
+GR++ P+L +++ F PL++Y ++ P++ F E IDA N +L HLV A E+
Sbjct: 483 AGRKDSPALVIFMGFNSPLERYILENPDEFFTKSSEYAAIDASNKYILYDHLVSAMNEYG 542
Query: 684 LSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIES 743
++ FG + +T+ + S + S I++ E + + I IR
Sbjct: 543 YLSSEHDRTFGCDIDKALTSASRSAFYSH--LIVRSGNIWKPAVREYVQGN-IRIRNSSH 599
Query: 744 ERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKY 803
E Y V V+E + E +A+ + ++GA+ +H Y V+ LN K + + +
Sbjct: 600 EVYTV--KCRGCVIETLSEDQAYREGHKGAIILHGDTRYRVRMLNTPDKTVTVTEENTEN 657
Query: 804 FTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQAL----ACTVTTTWFGFYRLWRGSGI 859
+T T I +SG T A +L + F Y + G G
Sbjct: 658 YTFASSITTIKISGDG------------TVVPAGSLHIRFGSMIVQEKFFKYSEYDGRGK 705
Query: 860 IFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNF 919
I + EL L + +++ +W VP K ++ F GL S+ L V P +V C+
Sbjct: 706 IREE-ELDLRPINIDTRGLWFTVP---KMTDDEEVKFSGGLAGLSNILSVVAPHFVLCDP 761
Query: 920 SDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTDM 958
D+ + + ++++D GG G+S++ D+
Sbjct: 762 GDMKCVAYSEFEYTDGAPTVVIFDNFMGGVGLSEKARDI 800
>gi|328950620|ref|YP_004367955.1| hypothetical protein Marky_1103 [Marinithermus hydrothermalis DSM
14884]
gi|328450944|gb|AEB11845.1| Protein of unknown function DUF1998 [Marinithermus hydrothermalis
DSM 14884]
Length = 741
Score = 321 bits (822), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 226/705 (32%), Positives = 350/705 (49%), Gaps = 94/705 (13%)
Query: 257 YSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQ 316
++HQAE+ AG+N+V+AT T+SGKSL + +P L+A+ S L+++PTKALA+DQ
Sbjct: 58 FAHQAEAFRVLEAGRNLVMATPTASGKSLVFQVPTLKAMLE--GHSVLFLYPTKALARDQ 115
Query: 317 LRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRI 376
L L + + F + YDGDT R R+ AR L+TNPDMLH ILP H ++
Sbjct: 116 LERLRDLAEPFGLQDRVHAYDGDTPAPKRRQARERARALLTNPDMLHFGILPRHTDWAHF 175
Query: 377 LSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSD 436
L+ L FVV+DE H Y+G FG H AL+LRRL R+ H YG+
Sbjct: 176 LARLA-------------------FVVVDELHYYRGVFGTHVALLLRRLLRVAQH-YGAH 215
Query: 437 PSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTD 496
P + ++AT NP+EH L + + P ++ FVLW P + + L + +
Sbjct: 216 PQLIAASATIQNPQEHAEHLFG-EAFTCVSAETRPTPRE-FVLWVPRALDKQGLARRSAN 273
Query: 497 MDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHL 556
M E + L + GL+ + F SRK EL+ Y + T+P
Sbjct: 274 M---------------EAAELAVYAAESGLKTLIFAGSRKTAELIGLYAK-----TSP-A 312
Query: 557 VDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIAS 616
+ I YRAGY A +RR +E F G++ + +T+ALELGID+G +D + +G+PGSI +
Sbjct: 313 GECIRTYRAGYTARERRALEAAFRAGEVRVLVSTSALELGIDIGDLDAVVLVGYPGSINA 372
Query: 617 LWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLV 676
WQ+AGR+GR R +L +++ E PLD+YF+ PE L S E D N + HL
Sbjct: 373 FWQRAGRAGRSGRRALVLWIPREDPLDEYFLHRPELLLASAPEAAVADPFNPYLYPPHLH 432
Query: 677 CAALEHPLSL---IYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPS 733
CAA E PL +Y G G + RG +I+ + P
Sbjct: 433 CAARELPLEPHEPLYKPALAGPGF-------RERG-----------GRIYTT---RRAPH 471
Query: 734 HTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKI 793
I +R E + + + VL ++E +A+++ + GA+Y+HQG YLV+ L+L ++
Sbjct: 472 REIVLRG-EGATF-TLKLADGTVLGHLDERQAYWEAHPGAIYLHQGEAYLVRNLDLEARE 529
Query: 794 ALCQKADLKYFTKTRDYTDIHVSGGNN-AYATKISKDQLTKTTAQALACTVTTTWFGFYR 852
+ + Y+T+ R T+I V G A + + L + G+ +
Sbjct: 530 VVLLPSLEDYYTQPRAETEILVKSGEALAPGVWVGRVVLKERVV------------GYVK 577
Query: 853 LWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVP 912
+ + + L LP+ S+E++A+W P++V S +HA H L+ ++P
Sbjct: 578 RRYVTESVLEEAPLELPELSFETEAIWFHPPEAVPPE-----RLPSAMHALEHTLIGLLP 632
Query: 913 IYVRCNFSDLA----PECPNPHDSRYFPERILLYDRHPGGTGVSK 953
++V D+ P P+P S P I +YD +PGG G ++
Sbjct: 633 LFVLAERRDIGGVSYPVYPHPLPSEGGPT-IFIYDGYPGGVGYAR 676
>gi|257387723|ref|YP_003177496.1| DEAD/DEAH box helicase [Halomicrobium mukohataei DSM 12286]
gi|257170030|gb|ACV47789.1| DEAD/DEAH box helicase domain protein [Halomicrobium mukohataei DSM
12286]
Length = 790
Score = 321 bits (822), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 228/781 (29%), Positives = 367/781 (46%), Gaps = 73/781 (9%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E + LR+ +GQ+V + R A + ++ + D AL GI +LY+HQA+++
Sbjct: 3 ETIAWLRERPFYEGQIVDQRTVPGRDATVADL--DVRDRLADALAEDGIEQLYAHQADAV 60
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL--LA 322
A G NVV++T T+SGKSL Y +P E D ++ LY+ P AL DQ L LA
Sbjct: 61 GAVRDGDNVVLSTATASGKSLAYTVPAFERALEDRRTT-LYVAPQVALINDQTETLSTLA 119
Query: 323 MTKAFDASIDIGVYDGDTTQKDRMWLRD-NARLLITNPDMLHMSILPYHGQFSRILSNLR 381
F + + + Y G +Q ++ +R+ +L+T PDMLH ILP+ + +
Sbjct: 120 DRLGFASGVSVAQYTGRQSQTEKEQIRERQPTVLLTTPDMLHYGILPHAHRLWK------ 173
Query: 382 LIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVF 441
F + VV+DE H+Y+G FG H AL+ RRL R+ + ++P ++
Sbjct: 174 ------------WFFQRLDTVVVDEVHSYRGVFGSHVALVFRRLQRIAER-FDAEPEWLC 220
Query: 442 STATSANPREHCMELANL--STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDD 499
+AT NP EH + S+ L+ +D S + +++WNP D
Sbjct: 221 CSATIGNPVEHAATVTGTAPSSYRLVDDDASASGPRHWLVWNPPEY-----------SGD 269
Query: 500 TRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LVD 558
+ + SS + E LF E+VQ GL+ + F SR+ E + + E L + H L D
Sbjct: 270 GWGSGRRKSSHV-ETRRLFVELVQRGLQTVVFTGSRQTAERYAADSAEALRDRGAHDLAD 328
Query: 559 SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLW 618
++ Y+A + RRR+ER+ G L GV +TNALELG+DVG +D + G+PG+ +
Sbjct: 329 AVGAYQAALTDDRRRRLERELKSGALRGVWSTNALELGVDVGGLDAVVLDGYPGTRMQTF 388
Query: 619 QQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCA 678
QQAGR+GR P+L V V E LDQY + P+ LF+ P E + +N +++ H A
Sbjct: 389 QQAGRAGRGRDPALVVLVGGEDQLDQYVVDNPDTLFEHPPEQAVTNPENEQLMPAHACSA 448
Query: 679 ALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISI 738
A E L D++YFG + + L+ G L+ + + + ++ G E P H S+
Sbjct: 449 ARETWLK-PDDDRYFGETFPALVADLERDGRLARRTTAEGTRWVY---GGEGSPQHETSL 504
Query: 739 RAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQK 798
R ++ + ++ + + + A + GA+Y HQG TY V +L+L IA +
Sbjct: 505 RTVDDQSIQL--RHGEDTIATLPLGDALRDAHPGAIYHHQGTTYEVTDLDLDHGIAELDR 562
Query: 799 ADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSG 858
YFT+ R +I V A D + + +T G+ R +G
Sbjct: 563 TWADYFTRVRHEKEITVEADLRADTLDARPDVPVRFADVTMRKQIT----GYERRDGQNG 618
Query: 859 IIFDTVELYLPKYSYESQAVWIQVPQSVKAVV----------------------EQNFSF 896
+ L LP+ + ++A++ VP ++ + + F
Sbjct: 619 EVIGRRSLDLPETTLRTKALYFTVPADLERAMLGEAVPATDDGTADGRDRPPAPDDPGDF 678
Query: 897 RSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVT 956
G+HAA HA + ++P C+ D+ H P I +YD HPGG G+ +
Sbjct: 679 PGGIHAAEHAAISMLPFEYLCDRRDVGGLSTPLHPHTDEPT-IFVYDGHPGGVGIVRSAY 737
Query: 957 D 957
D
Sbjct: 738 D 738
>gi|229819123|ref|YP_002880649.1| DEAD/DEAH box helicase [Beutenbergia cavernae DSM 12333]
gi|229565036|gb|ACQ78887.1| DEAD/DEAH box helicase domain protein [Beutenbergia cavernae DSM
12333]
Length = 803
Score = 320 bits (821), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 241/774 (31%), Positives = 373/774 (48%), Gaps = 89/774 (11%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+VH+E+ R PD +A G+ + + HQ E+ A+ +G + V+AT T
Sbjct: 20 LVHLEEREPRPGSTAAWPDWADAELVTAYVRLGVERPWVHQVEAADAAWSGTHTVLATST 79
Query: 280 SSGKSLCYNLPVLEAL-----------SHDLSSSALYMFPTKALAQDQ---LRALLAMTK 325
SGKSL LP L A+ S ++ LY+ PTKALA DQ L LLA +
Sbjct: 80 GSGKSLAAWLPALTAVRRPPEQPGRISSLRRRAAVLYLAPTKALAADQRHGLERLLAAGE 139
Query: 326 AFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAF 385
D + + DGDT +R W RD+A ++++NPD LH S+LP H ++ R+L LR
Sbjct: 140 LRD--VRVATCDGDTPLDERDWARDHADVVLSNPDFLHFSMLPGHRRWDRLLRGLR---- 193
Query: 386 SLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTAT 445
+VV+DE HAY+G FG H +L+LRRL + G+ P+ V ++AT
Sbjct: 194 ---------------YVVVDECHAYRGVFGAHVSLVLRRLL-RLAEAAGAAPTVVMASAT 237
Query: 446 SANPREHCMELANLST--LELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNA 503
+ +P L ++ + + D SP ++ LW P + + +++ +A
Sbjct: 238 TGDPGATAARLIGVAPDRVHAVTRDASPQGRRRIALWEPPPTRETGAAPAPVSVEEGGDA 297
Query: 504 ANKT--------SSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH 555
A+ S ++E + L A++V+ R +AF RSR E+V + E L+ H
Sbjct: 298 ADAGVLEGDFPRRSALAETADLLADLVRGRRRTLAFVRSRIGAEVVAT---EALD----H 350
Query: 556 LVDSIC--------VYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLH 607
L D++ YR GY+ E+RR +E D G L +A TNALELG+DV +D L
Sbjct: 351 LGDAVAGARRPPVAAYRGGYLPEERRDLEADLRTGDLLALATTNALELGVDVAGLDAVLM 410
Query: 608 LGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQN 667
G+PG+ S WQQ+GR+GR LAV VA E PLD Y + +PE +F +E D N
Sbjct: 411 AGWPGTRVSFWQQSGRAGRAGAEGLAVLVASENPLDTYLVHHPEAIFDEQVEATSFDPTN 470
Query: 668 HKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIG 727
VL HL AA E PL+ + D + FG +S + L+ R L P+ Y
Sbjct: 471 PYVLAPHLCAAAAERPLTDV-DLERFGLPDASLLDELERRALLRRRPT-------GWYWN 522
Query: 728 HEKM--PSHTISIRAIESER-YEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLV 784
H + PS +R + +V++ + +L ++ S+A V+ GAVY+HQG T+ V
Sbjct: 523 HALVDPPSRLTDLRGSGGQAPVQVVEDGTGRLLGTVDGSRADATVHAGAVYVHQGRTFEV 582
Query: 785 KELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVT 844
L L+ +AL + Y T++R T + V A ++ T V+
Sbjct: 583 --LGLADDVALVTAQHVTYRTRSRSTTHVRV-------AAELRTTSWGPVTWGYGQLEVS 633
Query: 845 TTWFGFYRLWRGSGI-IFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNF---SFRSGL 900
+ G+ R R G+ I + L LP ++ + VW P + A+ E L
Sbjct: 634 SQVLGYDRR-RLPGMEIIGSYPLELPVRTFATTGVWWTAP--LDALREAGLDVGDVPGAL 690
Query: 901 HAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
HAA HA + ++P+ C+ D+ H+ P + +YD +PGG G +++
Sbjct: 691 HAAEHAAIGMLPLLATCDRWDIGGLSTALHEDTGQPT-VFVYDGYPGGAGFAER 743
>gi|409730369|ref|ZP_11271943.1| putative helicase [Halococcus hamelinensis 100A6]
gi|448722996|ref|ZP_21705522.1| putative helicase [Halococcus hamelinensis 100A6]
gi|445788291|gb|EMA39009.1| putative helicase [Halococcus hamelinensis 100A6]
Length = 777
Score = 320 bits (820), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 230/762 (30%), Positives = 358/762 (46%), Gaps = 87/762 (11%)
Query: 218 GQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVAT 277
GQ+ H A A V D L + L LY+HQAE++ AG+NV VAT
Sbjct: 21 GQVAHDHTQPAADAETVPAADVL----EPGLADRLPHDLYTHQAEALSLLEAGENVCVAT 76
Query: 278 MTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYD 337
TSSGK+ Y L + S+AL ++PTKAL++DQ +AL + ID+ VYD
Sbjct: 77 STSSGKTFVYGLHIARQHYRGEDSTALLVYPTKALSRDQKQALDELYATLGLDIDVAVYD 136
Query: 338 GDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFL 397
GDT +R +R+ + ++I+N +++ L H ++ + L L+A
Sbjct: 137 GDTPSNERRRIREGSDVVISNFSGVNV-YLSDHALWAEFHARLHLVA------------- 182
Query: 398 FIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELA 457
IDE+H+Y G G H A ++RRL R+ Y +DP ++AT NP+EH L
Sbjct: 183 ------IDESHSYTGIQGMHVAWVIRRLWRVLDR-YDADPQVTLTSATIGNPKEHAESL- 234
Query: 458 NLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYL 517
T+ ++ DGSP ++ V W+P ++TD N S E S +
Sbjct: 235 TAKTVRVVDEDGSPHGEREIVFWDP---------PTETD----ENGEEVKRSADEEASDV 281
Query: 518 FAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIER 577
A + L+ + F RSRK EL R E+ + Y AG+ + RR+ E
Sbjct: 282 LAHLADRDLQTLMFTRSRKQTELDARRVRNADEDLVSTGRLDVEAYNAGHGKDTRRQTED 341
Query: 578 DFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVA 637
GKL G+ +TNALELGID+G +D T+ G+PG+ S WQQ GRSGR +L V+VA
Sbjct: 342 RLKSGKLDGIVSTNALELGIDIGSVDATILTGYPGTRQSFWQQVGRSGRGLSDALGVFVA 401
Query: 638 FEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSG- 696
+DQY + +PE + IE +D N V +HL+CAA E PL+ D ++FG
Sbjct: 402 NYDSIDQYILDHPEYILGDTIEDAVVDTTNDPVYARHLLCAAEEIPLTHD-DGRWFGDER 460
Query: 697 LSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEV 756
L + + G + L+S +Y G + P IS+ A +SE++EV +
Sbjct: 461 LERAVEMWRRAGRMVG--RLESG---VQYDGPHR-PQMDISMYATQSEQFEVRIENGDID 514
Query: 757 LEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSS--KIALCQKADLKYFTKTRDYTDIH 814
+E I+ +A+ +EGAV++H+G Y + ELN L ++ + Y+T+T
Sbjct: 515 MEPIDRVRAYRDFHEGAVHLHKGTEYEIVELNEEGAHPYVLLERTNANYYTRT------- 567
Query: 815 VSGGNNAYATKISKDQLTKTTAQALA---------CTVTTTWFGFYRLWRGSGIIFDTVE 865
++I+ L + ++AL TVT ++ + ++ G G +
Sbjct: 568 --------LSEITIGDLDRQDSRALGNDIVLCYGEATVTVDYYAYKKIEYGRGDGGLQIP 619
Query: 866 LYLPKYSYESQAVWIQVPQSVKAVVEQNFSFR-------SGLHAASHALLHVVPIYVRCN 918
L +Q VW+ P +++ GLHAA H + + P+ +R +
Sbjct: 620 TGLDPIEMRTQLVWVAFPDGTMDDLDERTGMDVDPEVLLGGLHAAEHGTIGMAPLELRLD 679
Query: 919 FSDLA--PECPNPH-DSRYFPERILLYDRHPGGTGVSKQVTD 957
DL +C +P D + +YD GG G S+ + D
Sbjct: 680 KGDLGGLSQCRHPELDGPVW----FVYDGVAGGLGFSRAIFD 717
>gi|302339116|ref|YP_003804322.1| DEAD/DEAH box helicase [Spirochaeta smaragdinae DSM 11293]
gi|301636301|gb|ADK81728.1| DEAD/DEAH box helicase domain protein [Spirochaeta smaragdinae DSM
11293]
Length = 767
Score = 317 bits (813), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 235/776 (30%), Positives = 381/776 (49%), Gaps = 91/776 (11%)
Query: 203 PLE-MVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQA 261
PLE ++E L++ + + + AR+ P L + +AL GI +LYSHQ
Sbjct: 4 PLEGILEELKRDRSFASNVGAWKRLPAREGSYAPFPKELDERIVTALGQQGIGQLYSHQR 63
Query: 262 ESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALL 321
+ AG++ VV T T+SGK+L YNLPV++ L + + ALY+FPTKAL+QDQ AL
Sbjct: 64 LAWEKIRAGEHCVVVTPTASGKTLAYNLPVMQRLLAEPEARALYLFPTKALSQDQQSALN 123
Query: 322 AMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLR 381
+ + D + I YDGDT + R+ R++ R++I+NPDMLH ILP H ++ + LSNL
Sbjct: 124 DIVLSDDLPVKITTYDGDTPKSLRVSARESGRIVISNPDMLHSGILPNHPKWIKFLSNL- 182
Query: 382 LIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVF 441
RFVVIDE H Y+G FG H A ++RRL R+ YGS F+
Sbjct: 183 ------------------RFVVIDEVHTYRGIFGSHMANLMRRLVRIAG-FYGSKIQFIC 223
Query: 442 STATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTR 501
+AT NP E ++ + +I+ +G+P K +L+NP + +V + + ++R
Sbjct: 224 CSATIKNPGELAEKIIG-EPVSVIEENGAPSGAKNLILYNPP-LVDAVQGIRRGVVLESR 281
Query: 502 NAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDS-- 559
+ A + ++ G++ I F RSR EL+ Y + L A H ++
Sbjct: 282 DIALR--------------FLRGGVKTIVFGRSRIRVELIADYINKAL---ANHFNENHR 324
Query: 560 --ICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASL 617
+ YR GY+ +RR+IER G + GV +TNALELGID+G +D + G P S++S
Sbjct: 325 TRVEAYRGGYLPGERRQIERGLRDGSIKGVVSTNALELGIDIGGLDAAVLAGIPASVSSA 384
Query: 618 WQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVC 677
QQ+GR+GR S+AV VA P DQY + + + F E I+ +N +L HL C
Sbjct: 385 LQQSGRAGRGASESVAVLVASASPTDQYLVGHEDYFFGRSPEAASINPENLYILLDHLKC 444
Query: 678 AALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTIS 737
A E P S E + G+ ++ L+ G + + K F P+ +S
Sbjct: 445 ALFELPFS--EGEDFGGNDTEPLLSYLEEEGV-----ARYTGGKWF--WADRGYPAEGVS 495
Query: 738 IRAIESERYEVIDMQS--NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIAL 795
+R+ SE +I+ NEV+ E++ A ++ AVY+H+G + L++ ++
Sbjct: 496 LRSASSENVVIINTTGGKNEVIGEMDLPSAKELLFPKAVYLHRGRQFQSLRLDVENRRCD 555
Query: 796 CQKADLKYFTKTRDYTDIH---------VSGGNNAYATKISKDQLTKTTAQALACTVTTT 846
+++ L Y+T + +DI G A + ++Q+ K A T
Sbjct: 556 VEESSLNYYTDSIVKSDIKPLEIDLEESFPWGCALLADVLVRNQVAKYKKLKFA-THENI 614
Query: 847 WFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQ-----VPQSVKAVVEQNFSFRSGLH 901
+G ++ LP+ +++ ++ VP + VE +
Sbjct: 615 GYG---------------DISLPEEEMHTRSFILRFDEGGVPAGQFSEVEAALAEEVIAR 659
Query: 902 AASHALLHVVPIYVRCNFSDL--APECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
+AS LL V P+++ C+ SD+ + +PH + I YD+ PGG G+++ +
Sbjct: 660 SAS-LLLSVAPLFLLCDHSDIGVSERLRDPH---FALPAIYFYDKAPGGIGLAESM 711
>gi|117929183|ref|YP_873734.1| DEAD/DEAH box helicase [Acidothermus cellulolyticus 11B]
gi|117649646|gb|ABK53748.1| DEAD/DEAH box helicase domain protein [Acidothermus cellulolyticus
11B]
Length = 838
Score = 317 bits (812), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 234/801 (29%), Positives = 381/801 (47%), Gaps = 122/801 (15%)
Query: 218 GQMVHVEDIS--ARKAVLVE-IPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVV 274
G+ VHV ++ A +A E P + + +AL++TGI + + HQ E+ + G++V+
Sbjct: 39 GRSVHVTGVATLAPRAERAEPWPSWVPASVVNALQATGIHQPWRHQVETADLAYRGQHVI 98
Query: 275 VATMTSSGKSLCYNLPVL--------EALSHDLSSSALYMFPTKALAQDQLRALLAMTKA 326
V T T+SGKSL LP L + + + LY+ PTKALA DQL + A
Sbjct: 99 VTTGTASGKSLACLLPGLAAIAAAEAQGRGQRRTPTVLYLSPTKALAADQLTRIRAWAVP 158
Query: 327 FDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFS 386
+ +YDGD++ DR W R A +++TNPDM+H +LP H +++ + LR
Sbjct: 159 ---GVCAAIYDGDSSPADRSWARRYANVVLTNPDMVHYGLLPGHRRWTSLWRGLR----- 210
Query: 387 LVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATS 446
+VV+DE H Y+G FG A +LRRL R+C H YG+DP FV ++AT
Sbjct: 211 --------------YVVVDECHCYRGIFGAQVAAVLRRLRRICRH-YGADPVFVCASATV 255
Query: 447 ANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANK 506
A P L + ++ D +P A F PT
Sbjct: 256 AEPDRAARLLTGVPA-RVVHGDAAPRAPLRFAFVEPTG---------------------- 292
Query: 507 TSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAG 566
S ++E +Y A++V G R IA+ SR+ E++ + R LE P V ++ YR G
Sbjct: 293 -GSAVAEAAYAVAQLVARGQRVIAYINSRRGTEILAAAARRHLETIRPSAVHAVAAYRGG 351
Query: 567 YVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGR 626
Y+ ++RRR+E + G+L G+AAT+ALELG+DV +D + +GFPG+ ASLWQQ GR+GR
Sbjct: 352 YLPDERRRLEAELRSGRLRGLAATSALELGVDVAGVDAVVLVGFPGTRASLWQQVGRAGR 411
Query: 627 RERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSL 686
R P+LAV++A + PLD+Y ++ PE L +E D N VL + AA E PL+
Sbjct: 412 RNSPALAVFIARDDPLDRYLVRRPETLLDGGVEAFVFDPGNRYVLAPQVCAAAAELPLT- 470
Query: 687 IYDEKYFGSGLSSGI------TTLKNRGYL----------------SSDPSL-------- 716
D + F + + T++ +RG + P++
Sbjct: 471 SEDVEVFSAPPGGAVFSAPPGTSVSSRGSAPHAPPPGPAIPGTSVSAGGPAIPSASVSAA 530
Query: 717 -----DSSAKIFE---------------YIGHEKMPSHTISIRAIESERYEVIDMQSNEV 756
D +A +F+ + + P+ +I +R +++++ + ++
Sbjct: 531 GSAPTDDAAALFDDLTRRGLLRRRRDGWHWVRRESPTASIDLRGAGGGTVDIVELPTGQL 590
Query: 757 LEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVS 816
L + A ++ GAVY+HQG ++LV+ + ++ L + AD+ Y T + TDI V
Sbjct: 591 LGTATDVHADVTLHPGAVYVHQGQSFLVESYDAEARAVLVRAADVDYVTIAEEVTDIRVV 650
Query: 817 GGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQ 876
AT + +D T Q V GF R +G D L ++
Sbjct: 651 ---ETVATTM-RDTATVCFGQ---VAVLRQVVGFARKRLLTGEFLDRFPLEPRTQRLATK 703
Query: 877 AVWIQVPQ-SVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLA--PECPNPHDSR 933
AVW V + +++ + HAA H+ + ++P++ C+ D+ +P R
Sbjct: 704 AVWWTVEEDALRRAALTPERYPGAAHAAEHSAIGLLPLFATCDRWDIGGVSTAWHPDTGR 763
Query: 934 YFPERILLYDRHPGGTGVSKQ 954
+ +YD +PGG G++++
Sbjct: 764 LT---VFVYDGYPGGAGIAER 781
>gi|448411577|ref|ZP_21575978.1| ATP-dependent helicase [Halosimplex carlsbadense 2-9-1]
gi|445670149|gb|ELZ22753.1| ATP-dependent helicase [Halosimplex carlsbadense 2-9-1]
Length = 775
Score = 317 bits (811), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 222/751 (29%), Positives = 351/751 (46%), Gaps = 56/751 (7%)
Query: 217 QGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVA 276
+GQ+ + R+A ++ L SA +S GI +LY HQA ++ A G NVV+A
Sbjct: 15 EGQITERRTTTGREATFADV--DLDSRLASAFESEGIDRLYDHQAAAVSAVRDGDNVVLA 72
Query: 277 TMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL--LAMTKAFDASIDIG 334
T T+SGKS+ Y +P E D +++ LY+ P AL DQ L LA F + + +
Sbjct: 73 TPTASGKSVGYTVPAFERALDDRATT-LYIAPQVALINDQEETLSDLAHGLGFASGVSVA 131
Query: 335 VYDGDTTQKDRMWLRD-NARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVY 393
Y G +K++ +RD +L+T PDMLH I+P HG RL +
Sbjct: 132 QYTGRQDRKEKEAIRDRQPTVLLTTPDMLHYGIMP-HGH--------RLWDW-------- 174
Query: 394 LIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHC 453
F + VVIDE H Y+G FG H +L+ RRL RLC + +DP +V +AT+ NP +H
Sbjct: 175 -FFERLETVVIDEVHEYRGVFGSHVSLVFRRLARLCER-FDADPDWVCCSATTGNPVDHA 232
Query: 454 MELANLST--LELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPI 511
+ T +L+ D S ++ WNP D + + S
Sbjct: 233 ATVTGQPTESFDLVTEDTSATGPTHWLCWNPPEY-----------GDGEGFGSGRRRSNH 281
Query: 512 SEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LVDSICVYRAGYVAE 570
E LF ++V G + + F +SR++ E + + L + H + S+ Y+A E
Sbjct: 282 VETKRLFVDLVTKGHQTVVFTQSRQVAERYATDSASDLRDRGEHDIARSVEAYQAALTDE 341
Query: 571 DRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERP 630
R IE G++ GV +TNALELG+D+G +D L G+PG+ + +QQ GR+GR P
Sbjct: 342 RRGEIEDGLDSGEIRGVWSTNALELGVDIGGLDAVLLDGYPGTRMAAFQQGGRAGRGTDP 401
Query: 631 SLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDE 690
SL VA E LDQY M +P F E + +N ++ H++ A E L D+
Sbjct: 402 SLVAMVAGEDQLDQYLMAHPRDFFDEEPEEAISNPENEHLMPDHVLAGARETWLQPD-DD 460
Query: 691 KYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVID 750
+FG + L G L ++ A + E P H +S+R + ++ D
Sbjct: 461 DHFGGPFPDIVADLTESGDLD---RRNTDAGLRWLYSGEGSPQHEMSLRTVGDREVQLRD 517
Query: 751 MQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDY 810
+ + + ++ + A + GAVY HQG Y V +L+L S +A Y+T+
Sbjct: 518 RRDGDRIAKLSFADALRDAHPGAVYHHQGQDYEVVDLDLRSDVADLAPVRPDYYTQVLHD 577
Query: 811 TDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPK 870
I V D + ++ +T GF R R SG L LP+
Sbjct: 578 KTITVENDRREQVLPTHDDVTVRFADVSMRKQIT----GFERYDRQSGEPIGQEPLELPE 633
Query: 871 YSYESQAVWIQVPQSVKAVV----EQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAP-E 925
+ E++A++ VP++V+ V + +F +HAA H ++ + P+ C+ D+
Sbjct: 634 TTLETEALYFTVPEAVETDVRVAGDGPDAFPGAIHAAEHGMISLFPLSFLCDRRDVGGLS 693
Query: 926 CP-NPHDSRYFPERILLYDRHPGGTGVSKQV 955
P +PH I +YD +PGG G++++
Sbjct: 694 TPLHPHTD---CATIFVYDGYPGGVGLTERA 721
>gi|392401786|ref|YP_006438398.1| DEAD/DEAH box helicase domain protein [Turneriella parva DSM 21527]
gi|390609740|gb|AFM10892.1| DEAD/DEAH box helicase domain protein [Turneriella parva DSM 21527]
Length = 773
Score = 315 bits (807), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 214/750 (28%), Positives = 357/750 (47%), Gaps = 83/750 (11%)
Query: 229 RKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYN 288
+ A EIP AL + LK GI KLYSHQ +++ LA ++ VV T T+SGK+LCY
Sbjct: 27 KAAKFAEIPKALGPELRRVLKERGIEKLYSHQQQAVELYLAQQDFVVTTPTASGKTLCYL 86
Query: 289 LPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWL 348
LP+L + + + L+MFPTKALAQDQL A A S ++ +DGDT +++R +
Sbjct: 87 LPILHSKLKNPNGKHLFMFPTKALAQDQLAAYRGYADALGMSWNVNTFDGDTPEEERRAV 146
Query: 349 RDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAH 408
R ++TNPDMLH I+P+H + NL I VIDE H
Sbjct: 147 RKAGDFILTNPDMLHSGIMPHHTIWKSFFENLETI-------------------VIDEMH 187
Query: 409 AYKGAFGCHTALILRRLCRLCSH--------VYGS---------DPSFVFSTATSANPRE 451
Y G FG H A +LRRL RL H + GS P ++F +AT ANP E
Sbjct: 188 TYIGVFGSHVANVLRRLNRLLEHYKPSRLTAIPGSGDPATSMSRGPRYIFCSATIANPAE 247
Query: 452 HCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPI 511
+L+ I G+P +K F+ ++P K Q SP
Sbjct: 248 LANQLSG-REFNAITESGAPEGRKYFLFYDP-----PFYEKLQI-----------AESPY 290
Query: 512 SEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAED 571
+ + + ++++ + I F RSR E++ + R L E+ L + YR G++ +
Sbjct: 291 KAAARIGSGLIRNNIPTIFFARSRNRVEILTEFLRSRLPES---LARKVRGYRGGFLPLE 347
Query: 572 RRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPS 631
RR++ER G GV +TNALELGID+G ++ + +G+PG ++SL+QQ GR+GR++ PS
Sbjct: 348 RRQVERSLREGTTLGVVSTNALELGIDIGALNAVISIGYPGRMSSLYQQFGRAGRKKEPS 407
Query: 632 LAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEK 691
LAV +A LDQY M+ P+ LF+S E ++ N + + + CAA E L +K
Sbjct: 408 LAVLIASPSALDQYLMRNPDYLFESKGEAAIVNPDNLLIYQDQIKCAAYE--LRFQQGDK 465
Query: 692 YFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDM 751
+ + + L + L+ F + P+ +S+R+ ++ + ++D
Sbjct: 466 FGEYPVDQFMDNL-----VEERVVLEKGGTYF--WTSDTYPAANVSLRSAATDNFVIVDK 518
Query: 752 Q---SNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTR 808
+ +V+ EI+ A +++ A+YMH G Y V L + A + Y+T
Sbjct: 519 THAGNEKVIGEIDLFSAPLFIHDEAIYMHAGRHYYVNILKWDERRAEVTEVKSDYYTDAH 578
Query: 809 DYTD---IHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVE 865
+ +H+ K ++ +LT+ + T+ + + ++ + +
Sbjct: 579 EKVHRSILHLD-------EKRTEKKLTQHWGE---VTLRRQAYLYKKIKIETSENLGWGQ 628
Query: 866 LYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPE 925
++ P+ +Q W+ + + NF + L ++ L + P+ C+ D++
Sbjct: 629 IHTPEIEMHTQGAWLDILPEALPQIPANF-MSALLTRFAYLLRQLAPLVALCDRRDISVS 687
Query: 926 CPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
+ D + I+ +D +PGG G+S ++
Sbjct: 688 S-SYRDVHFGDHAIIFHDNYPGGVGLSHKL 716
>gi|422394916|ref|ZP_16474957.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Propionibacterium
acnes HL097PA1]
gi|327334814|gb|EGE76525.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Propionibacterium
acnes HL097PA1]
Length = 673
Score = 315 bits (807), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 200/628 (31%), Positives = 319/628 (50%), Gaps = 76/628 (12%)
Query: 301 SSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPD 360
+SALY+ PTKALA DQ R + + DGD+ + +R + R+ AR ++TNPD
Sbjct: 30 NSALYLAPTKALAHDQERVCREVGPR---DWLVSTLDGDSDEAERRFAREQARYVLTNPD 86
Query: 361 MLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTAL 420
MLH ++LP H +++ +L +LR +VVIDEAH Y+G FG H A
Sbjct: 87 MLHHTVLPSHARWAGLLGSLR-------------------YVVIDEAHRYRGVFGAHVAQ 127
Query: 421 ILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLW 480
++RRL RLC ++G+DP F+ S+ATS N E L + +E++ D SP + VLW
Sbjct: 128 VIRRLRRLC-RMHGADPVFLLSSATSTNAAEAGTRLLGVEKVEVVDEDCSPHPGRDVVLW 186
Query: 481 NPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCEL 540
P + + + + L A++ GL+ I F SR L E+
Sbjct: 187 QPAESIST------------------------DTTGLVADLADAGLQTICFVASRSLAEV 222
Query: 541 VLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVG 600
+ ++ ++ + A + YRAGY+ EDRRRIE G + V ATNALELG+D+
Sbjct: 223 ISAHAQDRVTSGA-----RVTAYRAGYLPEDRRRIEARLQDGSVRAVVATNALELGVDIS 277
Query: 601 HIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIEC 660
+D + G+PG +++LWQQAGR+GR R +L V +A E PLDQY ++PE LF S +E
Sbjct: 278 GMDAVVIAGYPGRLSALWQQAGRAGRSGRDALVVLMARENPLDQYLFEHPELLFSSSVES 337
Query: 661 CHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSA 720
+ N VL H+ AA E LS DE+++GS + TL + L
Sbjct: 338 TVLHPDNPYVLGPHVAAAAQEAYLSPA-DEEFYGSAFAGVCKTLTGQNVLRR-----RGN 391
Query: 721 KIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGH 780
++F + E+ I +R+ + ++ID+ + V+ ++E+ A V+ GAVY+HQG
Sbjct: 392 RLF-WTRPERA-VDAIDLRSAAGKGIDIIDVSTGRVIGGVDEAAADRTVHPGAVYLHQGD 449
Query: 781 TYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQA-L 839
+LV E N AL + Y+T+ + +A +I +++ + +
Sbjct: 450 QWLVDEYNPVEHHALVHQDLPGYWTQPQ-----------SASTVRILREERRRACGPGYV 498
Query: 840 AC---TVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSF 896
AC +T G+ R + ++D+V L +P ++ +QA W +P V ++ N
Sbjct: 499 ACGQVELTEQVVGYLRRDEITNDVWDSVPLEMPTHTMITQACWWVIPDKVVDDLKFNAVH 558
Query: 897 RSG-LHAASHALLHVVPIYVRCNFSDLA 923
+G H A H + ++P+Y C+ D+
Sbjct: 559 LAGAAHGAEHTAIGLLPMYSPCDRWDVG 586
>gi|336120608|ref|YP_004575394.1| ATP-dependent helicase [Microlunatus phosphovorus NM-1]
gi|334688406|dbj|BAK37991.1| putative ATP-dependent helicase [Microlunatus phosphovorus NM-1]
Length = 854
Score = 315 bits (806), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 229/755 (30%), Positives = 350/755 (46%), Gaps = 117/755 (15%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNT--KSALKSTGISKLYSHQAESIMASLAGKNVVVA 276
++ HV ++ R P L ++ ++AL+S GI +L++HQ+ + A A ++VV+
Sbjct: 25 EVRHVRELPPRLVRYGPWPSWLSTDSPVRAALESAGIDRLWAHQSVAADALAAQRHVVLT 84
Query: 277 TMTSSGKSLCYNLPVLEAL-----------------------------SHDLSS------ 301
T T+SGKSL Y LP+ A S + SS
Sbjct: 85 TGTASGKSLAYLLPIASAAIGASPAVPVSTGVGPADAQTAGAGTTGVGSPEPSSGVRWRR 144
Query: 302 ---SALYMFPTKALAQDQLR--ALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLI 356
++LY+ PTKALA DQ R A LA+ A++D GDT + DR W RD+A ++
Sbjct: 145 RPATSLYLAPTKALAHDQARVCAELAVPGWRVATVD-----GDTDRADRQWARDHAHHVL 199
Query: 357 TNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGC 416
TNPD+LH S+LP H +++ L +LR FVV+DE+H Y+G FG
Sbjct: 200 TNPDLLHASLLPNHARWASFLRSLR-------------------FVVVDESHRYRGLFGA 240
Query: 417 HTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLS--TLELIQNDGSPCAQ 474
A++LRRL R+ +H YG+DP F +AT+A P + L ++ +L ++ +DGSP
Sbjct: 241 QVAVVLRRLRRIAAH-YGADPVFAVLSATTAEPEQTASALTGIAADSLLVVSDDGSPRGP 299
Query: 475 KLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRS 534
L A++ + + L A+ V G + + F S
Sbjct: 300 VRISL-----------------------ASSTGGAAEDAAAELMADRVGAGQQVLTFVPS 336
Query: 535 RKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALE 594
R+L E V R + P + YRAGY+A DRR IER G + GVAATNALE
Sbjct: 337 RRLAEEV---ARSAAQRAGPD-CGEVVAYRAGYLATDRRAIERGLNDGSVRGVAATNALE 392
Query: 595 LGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLF 654
LG+D+ +D + G+PG A+ WQQAGR+GRR P+ V +A P+D Y + +P LF
Sbjct: 393 LGVDIAGLDTVVLCGYPGQRAAFWQQAGRAGRRGGPAEVVLIARPNPVDAYLLDHPNALF 452
Query: 655 KSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDP 714
P+E +D + VL L AA E PL DE++FGS L + G L P
Sbjct: 453 DLPVEASVLDPEAAPVLGPQLAAAAQERPLR-PGDEQWFGSRTWPITARLTDLGVLRKRP 511
Query: 715 SLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAV 774
Y I++R +S +++++ + VL + ++ V+ GAV
Sbjct: 512 D-------GWYWTSPNRAVDRINLRTADSRTLDIVEVPTGRVLGTVSAAEVDRVVHPGAV 564
Query: 775 YMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKT 834
Y+HQG T+L + + + A Y T+ D V+ G + + + +L
Sbjct: 565 YLHQGDTFLCGDAEAEAGEVYVRAARPGYLTQA--LVDTEVAPGTSVHGRTVGSGRLAYG 622
Query: 835 TAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSV------KA 888
AQ V + GF R +G ++D+ L P+ + AV + V A
Sbjct: 623 PAQ-----VRSVVTGFLRRDEITGQVWDSTPLDCPEQVLATSAVTLTVATETLQTGRDGA 677
Query: 889 VVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLA 923
V +GLHA H L ++P + + D+
Sbjct: 678 VPLSPARLDAGLHALEHLLAGMLPAVLTSDHDDIG 712
>gi|283457412|ref|YP_003361988.1| distinct helicase family protein [Rothia mucilaginosa DY-18]
gi|283133403|dbj|BAI64168.1| distinct helicase family protein [Rothia mucilaginosa DY-18]
Length = 930
Score = 314 bits (804), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 235/847 (27%), Positives = 372/847 (43%), Gaps = 153/847 (18%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAG-------- 270
Q+ H+ ++AR+A P L A +S GI+ Y+HQ ++ A+ AG
Sbjct: 66 QVTHIHTVAAREASYAPWPQWLHPRVVEAFESLGIADPYAHQVQAADAAHAGLDAALAAS 125
Query: 271 ---------------------------------KNVVVATMTSSGKSLCYNLPVLEAL-- 295
+V+VAT T+SGK+L Y +P L+A+
Sbjct: 126 TARYGWQAGRIEAERVEAPTPAHVEGAKSAGSGGHVIVATGTASGKTLSYLMPTLDAIYR 185
Query: 296 ---------------SHDLSSSA--LYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDG 338
+ +L++ A LY+ P KAL+ DQL AL + + YDG
Sbjct: 186 ASCGEPVSSTSAYSRAENLNNRANVLYISPAKALSADQLTALTSYNLP---GLHAASYDG 242
Query: 339 DTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLF 398
DT +R W+R++A ++T PDML+ SIL H Q++ L LR
Sbjct: 243 DTPTGERRWIREHANFILTTPDMLNYSILSNHRQWASFLRGLR----------------- 285
Query: 399 IRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELAN 458
+VV+DEAH+Y+G FG H A +LRRL R+C+ +Y + P F ++ATS+NP E +L
Sbjct: 286 --YVVLDEAHSYRGVFGAHIANLLRRLRRVCA-LYRTVPVFYGASATSSNPVESFSKLIG 342
Query: 459 LS--TLELIQNDGSPCAQKLFVLWNP-----------TSCLRSVLNKSQTDMDDTRNAAN 505
+ + + S + LW P RS + Q A
Sbjct: 343 VPQQAVTAVTESTSARGETTVALWEPEFMPPKAHDQLAKGARS--TQQQAVQSKAEQEAP 400
Query: 506 KTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRA 565
+ SP+ + + + ++V R + F SR+ E++ T+ L+E L + YRA
Sbjct: 401 RRVSPVEQGAQMLTDLVLSRTRSLVFAGSRRSVEILSQKTQRYLDEVEAGLSHRVAAYRA 460
Query: 566 GYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSG 625
GY E+RR +ER G+L G+A+T+ALELGID+ +D L G+PG+ AS Q+ GR+G
Sbjct: 461 GYTPEERRELERKLRNGELLGLASTSALELGIDISGLDAVLVAGWPGTRASFMQRVGRAG 520
Query: 626 RRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLS 685
R + +LAV +A + PLD Y + +PE +F +E D N VL L AA E P+
Sbjct: 521 RSGQDALAVLIADDNPLDTYLVHHPEAIFGQEVEATVFDPTNPYVLSPQLCAAAQEAPIR 580
Query: 686 LIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESER 745
+ FG ++ + L +GYL P Y H + + + IR
Sbjct: 581 -AEELSLFGPHTAALLNRLVQQGYLRRRPD-------GWYWTHAESAADLVDIRGTGGGP 632
Query: 746 YEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFT 805
Y++ID + ++ ++ + A Q + GA+Y+HQ Y+V+ L+ ++ L + Y+T
Sbjct: 633 YQLIDAEDGTLVGTMDAAHAMSQGHPGAIYIHQSAQYVVESLSEGERVILLSRVYPDYYT 692
Query: 806 KTRDYTDIHV--------SGGNNAYATKISKDQLTKTTAQALACT--------------- 842
+ + T++ + G NA I + TA A +
Sbjct: 693 RAVESTEVRILAERARVSYGAQNAVGEAIPGETTPGVTAPAESAPGEPVPGEPQLAPLTM 752
Query: 843 ------VTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSF 896
VT G+ R G E +P ++AVW E ++ F
Sbjct: 753 HRGQVQVTDQVTGYRRFSVHGGEYLGEEEQPMPPEVLMTEAVWF--------TFEPSYLF 804
Query: 897 RSG---------LHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPG 947
+G LHAA HA + ++P+ + DL H P I +YD PG
Sbjct: 805 GAGVTEGDGPGTLHAAEHAAIGLLPLIATSDRWDLGGLSTLLHVDTGRPT-IFVYDAAPG 863
Query: 948 GTGVSKQ 954
G G+S++
Sbjct: 864 GAGISER 870
>gi|145347328|ref|XP_001418125.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578353|gb|ABO96418.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 758
Score = 314 bits (804), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 221/754 (29%), Positives = 386/754 (51%), Gaps = 66/754 (8%)
Query: 214 IGSQGQMVHVEDISARKAVLVEIPDALLDNTKSA-LKSTGISKLYSHQAESIMASLAGKN 272
+ ++ Q V V+ + R+ PD +D T +A L G ++LYSHQ+ +I A+ +G++
Sbjct: 1 MSAKPQCVGVKWLDRREEDNTSPPDFEVDGTLAAVLARCGTTRLYSHQSAAIKAARSGRS 60
Query: 273 VVVATMTSSGKSLCYNLPVLEALSHDLS--SSALYMFPTKALAQDQLRALLAMTKAFDAS 330
VVV+T T+SGKS+CY +P+ EA+ + S S AL MFP KALA DQL + + A
Sbjct: 61 VVVSTPTASGKSICYVVPIFEAIMDERSKQSKALLMFPLKALANDQLHKM----RRRLAD 116
Query: 331 IDIGVYDGDTTQKDRMWLR-DNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVT 389
+ V DGDT + + ++ ++++TNPD LH ++LP H + +
Sbjct: 117 AKLAVCDGDTDEAAKKQIKIQGTQIILTNPDSLHHAMLPGHRTWGKKF------------ 164
Query: 390 TEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLC-SHVYGSDPSFVFSTATSAN 448
+ +R++V+DEAH + G G H A +LRRL R+C S + P F+ ++AT +N
Sbjct: 165 ------WGSLRYIVLDEAHTHTGVSGSHVANVLRRLSRVCASWDPTTRPEFICTSATISN 218
Query: 449 PREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTS 508
P +H L + + + G+P +K +LW P A ++
Sbjct: 219 PVQHIRRLTTRTPV-CVDISGAPSGEKAMILWQPPE----------------SEAGGMSA 261
Query: 509 SPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYV 568
+ + L + V+ +RC+ F +R L E V + L + P L + YRAGY
Sbjct: 262 ATWFQQPNLASLSVRSKIRCLVFVSARTLAETVSRDAKANLAKKNPELASKVDSYRAGYN 321
Query: 569 AEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRE 628
+RR++ER G++ + T+ALE+GIDVG +D T+H+G P + +++WQQAGR+GRR
Sbjct: 322 QIERRKLERRLQNGEISALVCTSALEMGIDVGSLDATVHVGVPETASAMWQQAGRAGRRR 381
Query: 629 RPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIY 688
S+A+ +A E PLD +++ P +LF+ E +D N +LE HL CAA E PL L
Sbjct: 382 GASVAIVIACERPLDYHYVTRPGELFERQSEEALVDPHNSAILEIHLPCAAKEAPLHLAI 441
Query: 689 DEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIES-ERYE 747
++ GS +S T + N+ + +++ + ++ P ++ +R ++S E ++
Sbjct: 442 -KRALGSS-TSARTCVFNK----TTKTIECAPNVY--------PHRSVMLRGVQSGEAWK 487
Query: 748 VIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKT 807
+++ S ++EEIE +A ++Y G V++ + ++V+ L++ ++IA + T+T
Sbjct: 488 LLESPSGSLVEEIEGHRALARLYVGCVFIARRKAFIVQRLDIENRIAHAAPYEKFETTQT 547
Query: 808 RDYTDIHVSGGN--NAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVE 865
R+ T++ V + +SK+ T V+ G+ R +G +
Sbjct: 548 RERTEVEVLAPDPEQGVGELVSKN-CAATRVHLGDIVVSEKVLGYARSDHKTGKLLHEEI 606
Query: 866 LYLPKYS--YESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDL- 922
P + Y ++AV+ +P V + R + ++ +V C+ D+
Sbjct: 607 WKTPVIAAQYRTRAVFFNLPDEVVNRRVAADALREATNGVANVCGGLVASIAMCDTRDVA 666
Query: 923 -APECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
A + PNP+++ RI LYD PGG G++++V
Sbjct: 667 GATQLPNPNETGPAAARIFLYDTTPGGIGIAEKV 700
>gi|422387071|ref|ZP_16467188.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Propionibacterium
acnes HL096PA2]
gi|422392641|ref|ZP_16472703.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Propionibacterium
acnes HL099PA1]
gi|422425143|ref|ZP_16502089.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA1]
gi|422426994|ref|ZP_16503912.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA1]
gi|422432101|ref|ZP_16508971.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA2]
gi|422434876|ref|ZP_16511734.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA2]
gi|422436869|ref|ZP_16513716.1| DEAD/DEAH box helicase [Propionibacterium acnes HL092PA1]
gi|422442598|ref|ZP_16519401.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA1]
gi|422446391|ref|ZP_16523136.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA1]
gi|422450260|ref|ZP_16526977.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA2]
gi|422453031|ref|ZP_16529727.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA3]
gi|422456670|ref|ZP_16533334.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA1]
gi|422460662|ref|ZP_16537296.1| DEAD/DEAH box helicase [Propionibacterium acnes HL038PA1]
gi|422474159|ref|ZP_16550629.1| DEAD/DEAH box helicase [Propionibacterium acnes HL056PA1]
gi|422476539|ref|ZP_16552978.1| DEAD/DEAH box helicase [Propionibacterium acnes HL007PA1]
gi|422483959|ref|ZP_16560338.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA2]
gi|422491529|ref|ZP_16567840.1| DEAD/DEAH box helicase [Propionibacterium acnes HL086PA1]
gi|422494397|ref|ZP_16570692.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA1]
gi|422500197|ref|ZP_16576453.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA2]
gi|422511322|ref|ZP_16587465.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA1]
gi|422515377|ref|ZP_16591489.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA2]
gi|422517945|ref|ZP_16594017.1| DEAD/DEAH box helicase [Propionibacterium acnes HL074PA1]
gi|422520588|ref|ZP_16596630.1| DEAD/DEAH box helicase [Propionibacterium acnes HL045PA1]
gi|422523522|ref|ZP_16599534.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA2]
gi|422526086|ref|ZP_16602085.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA1]
gi|422528603|ref|ZP_16604585.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA1]
gi|422531533|ref|ZP_16607481.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA1]
gi|422536060|ref|ZP_16611968.1| DEAD/DEAH box helicase [Propionibacterium acnes HL078PA1]
gi|422541333|ref|ZP_16617191.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA1]
gi|422543881|ref|ZP_16619721.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA1]
gi|422546300|ref|ZP_16622127.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA3]
gi|422550725|ref|ZP_16626522.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA1]
gi|422557493|ref|ZP_16633236.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA2]
gi|422559254|ref|ZP_16634982.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA1]
gi|422562297|ref|ZP_16637975.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA1]
gi|422570724|ref|ZP_16646319.1| DEAD/DEAH box helicase [Propionibacterium acnes HL067PA1]
gi|422578042|ref|ZP_16653571.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA4]
gi|313772779|gb|EFS38745.1| DEAD/DEAH box helicase [Propionibacterium acnes HL074PA1]
gi|313793198|gb|EFS41265.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA1]
gi|313802713|gb|EFS43931.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA2]
gi|313810919|gb|EFS48633.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA1]
gi|313814582|gb|EFS52296.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA1]
gi|313815327|gb|EFS53041.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA1]
gi|313828765|gb|EFS66479.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA2]
gi|313831684|gb|EFS69398.1| DEAD/DEAH box helicase [Propionibacterium acnes HL007PA1]
gi|313834434|gb|EFS72148.1| DEAD/DEAH box helicase [Propionibacterium acnes HL056PA1]
gi|313840375|gb|EFS78089.1| DEAD/DEAH box helicase [Propionibacterium acnes HL086PA1]
gi|314916042|gb|EFS79873.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA4]
gi|314917194|gb|EFS81025.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA1]
gi|314921693|gb|EFS85524.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA3]
gi|314931100|gb|EFS94931.1| DEAD/DEAH box helicase [Propionibacterium acnes HL067PA1]
gi|314955031|gb|EFS99437.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA1]
gi|314959070|gb|EFT03172.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA1]
gi|314964610|gb|EFT08710.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA1]
gi|314969709|gb|EFT13807.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA1]
gi|314974775|gb|EFT18870.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA1]
gi|314977025|gb|EFT21120.1| DEAD/DEAH box helicase [Propionibacterium acnes HL045PA1]
gi|314985488|gb|EFT29580.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA1]
gi|315078372|gb|EFT50403.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA2]
gi|315082160|gb|EFT54136.1| DEAD/DEAH box helicase [Propionibacterium acnes HL078PA1]
gi|315097323|gb|EFT69299.1| DEAD/DEAH box helicase [Propionibacterium acnes HL038PA1]
gi|315099510|gb|EFT71486.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA2]
gi|315101983|gb|EFT73959.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA1]
gi|315106318|gb|EFT78294.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA1]
gi|315110094|gb|EFT82070.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA2]
gi|327331307|gb|EGE73046.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Propionibacterium
acnes HL096PA2]
gi|327447314|gb|EGE93968.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA1]
gi|327450240|gb|EGE96894.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA2]
gi|327454509|gb|EGF01164.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA3]
gi|327456578|gb|EGF03233.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA2]
gi|327457147|gb|EGF03802.1| DEAD/DEAH box helicase [Propionibacterium acnes HL092PA1]
gi|328755560|gb|EGF69176.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA1]
gi|328756889|gb|EGF70505.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA2]
gi|328761120|gb|EGF74664.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Propionibacterium
acnes HL099PA1]
Length = 673
Score = 312 bits (800), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 199/628 (31%), Positives = 319/628 (50%), Gaps = 76/628 (12%)
Query: 301 SSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPD 360
+SALY+ PTKALA DQ R + + DGD+ + +R + R+ AR ++TNPD
Sbjct: 30 NSALYLAPTKALAHDQERVCREVGPR---DWLVSTLDGDSDEAERRFAREQARYVLTNPD 86
Query: 361 MLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTAL 420
MLH ++LP H +++ +L +LR +VVIDEAH Y+G FG H A
Sbjct: 87 MLHHTVLPSHARWAGLLGSLR-------------------YVVIDEAHRYRGVFGAHVAQ 127
Query: 421 ILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLW 480
++RRL RLC ++G+DP F+ S+ATS N E L + +E++ D SP + VLW
Sbjct: 128 VIRRLRRLC-RMHGADPVFLLSSATSTNAAEAGTRLLGVEKVEVVDEDCSPHPGRDVVLW 186
Query: 481 NPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCEL 540
P + + + + L A++ GL+ I F SR L E+
Sbjct: 187 QPAESIST------------------------DATGLVADLADAGLQTICFVASRSLAEV 222
Query: 541 VLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVG 600
+ ++ ++ + A + YRAGY+ EDRRRIE G + V ATNALELG+D+
Sbjct: 223 ISAHAQDRVTSGA-----RVTAYRAGYLPEDRRRIEARLQDGSVRAVVATNALELGVDIS 277
Query: 601 HIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIEC 660
+D + G+PG +++LWQQAGR+GR R +L V +A E PLDQY ++PE LF S +E
Sbjct: 278 GMDAVVIAGYPGRLSALWQQAGRAGRSGRDALVVLMARENPLDQYLFEHPELLFSSSVES 337
Query: 661 CHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSA 720
+ N VL H+ AA E LS DE+++GS + TL + L
Sbjct: 338 TVLHPDNPYVLGPHVAAAAQEAYLSPA-DEEFYGSAFAGICKTLTGQNVLRR-----RGN 391
Query: 721 KIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGH 780
++F + E+ I +R+ + ++ID+ + V+ ++E+ A V+ GAVY+HQG
Sbjct: 392 RLF-WTRPERA-VDAIDLRSAAGKGIDIIDVSTGRVIGGVDEAAADRTVHPGAVYLHQGD 449
Query: 781 TYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQA-L 839
+LV E N AL + Y+T+ + +A +I +++ + +
Sbjct: 450 QWLVDEYNPVEHHALVHQDLPGYWTQPQ-----------SASTVRILREERRRACGPGYV 498
Query: 840 AC---TVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSF 896
AC +T G+ R + ++D+V L +P ++ +QA W +P V ++ +
Sbjct: 499 ACGQVELTEQVVGYLRRDEITNDVWDSVALEMPTHTMITQACWWVIPDKVVDDLKFDAVH 558
Query: 897 RSG-LHAASHALLHVVPIYVRCNFSDLA 923
+G H A H + ++P+Y C+ D+
Sbjct: 559 LAGAAHGAEHTAIGLLPMYSPCDRWDVG 586
>gi|422458043|ref|ZP_16534701.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA2]
gi|422576816|ref|ZP_16652353.1| DEAD/DEAH box helicase [Propionibacterium acnes HL001PA1]
gi|314922382|gb|EFS86213.1| DEAD/DEAH box helicase [Propionibacterium acnes HL001PA1]
gi|315104887|gb|EFT76863.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA2]
Length = 673
Score = 311 bits (798), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 198/628 (31%), Positives = 319/628 (50%), Gaps = 76/628 (12%)
Query: 301 SSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPD 360
+SALY+ PTKAL DQ R + + + DGD+ + +R + R+ AR ++TNPD
Sbjct: 30 NSALYLAPTKALTHDQERVC---HEVGPRNWLVSTLDGDSDEAERRFAREQARYVLTNPD 86
Query: 361 MLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTAL 420
MLH ++LP H +++ +L +LR +VVIDEAH Y+G FG H A
Sbjct: 87 MLHHTVLPSHARWAGLLGSLR-------------------YVVIDEAHQYRGVFGAHVAQ 127
Query: 421 ILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLW 480
++RRL RLC ++G+DP F+ S+ATS N E L + +E++ D SP + VLW
Sbjct: 128 VIRRLRRLC-RMHGADPVFLLSSATSTNAAEAGTRLLGVEKVEVVDEDYSPHPGRDVVLW 186
Query: 481 NPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCEL 540
P + + + + L A++ GL+ I F SR L E+
Sbjct: 187 QPAESISA------------------------DATGLVADLTDAGLQTICFVASRSLAEV 222
Query: 541 VLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVG 600
+ ++ ++ + A + YRAGY+ EDRRRIE G + V ATNALELG+D+
Sbjct: 223 ISAHAQDRVTSGA-----RVTAYRAGYLPEDRRRIEAKLQDGSMRAVVATNALELGVDIS 277
Query: 601 HIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIEC 660
+D + G+PG +++LWQQAGR+GR R +L V +A E PLDQY ++PE LF S +E
Sbjct: 278 GMDAVVIAGYPGRLSALWQQAGRAGRSGRDALVVLMARENPLDQYLFEHPELLFSSSVES 337
Query: 661 CHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSA 720
+ N VL H+ AA E LS DE+++GS + TL + L
Sbjct: 338 TVLHPDNPYVLGPHVAAAAQEAYLSPA-DEEFYGSAFAGICKTLTGQNVLRR-----RGN 391
Query: 721 KIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGH 780
++F + E+ I +R+ + ++ID+ + V+ ++E+ A V+ GAVY+HQG
Sbjct: 392 RLF-WTRPERA-VDAIDLRSAAGKGIDIIDVSTGRVIGVVDEAAADRTVHPGAVYLHQGD 449
Query: 781 TYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQA-L 839
+LV E N AL + Y+T+ + +A +I +++ + +
Sbjct: 450 QWLVDEYNPVEHHALVHQDLPGYWTQPQ-----------SASTVRILREERRRDCGPGYV 498
Query: 840 AC---TVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSF 896
AC +T G+ R + ++D+V L +P ++ +QA W +P V ++ +
Sbjct: 499 ACGQVELTEQVVGYLRRDEITNDVWDSVALEMPTHTMITQACWWVIPDKVVDDLKLDAVH 558
Query: 897 RSG-LHAASHALLHVVPIYVRCNFSDLA 923
+G H A H + ++P+Y C+ D+
Sbjct: 559 LAGAAHGAEHTAIGLLPMYSPCDRWDVG 586
>gi|422463713|ref|ZP_16540326.1| DEAD/DEAH box helicase [Propionibacterium acnes HL060PA1]
gi|315094235|gb|EFT66211.1| DEAD/DEAH box helicase [Propionibacterium acnes HL060PA1]
Length = 673
Score = 311 bits (798), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 198/628 (31%), Positives = 319/628 (50%), Gaps = 76/628 (12%)
Query: 301 SSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPD 360
+SALY+ PTKAL DQ R + + + DGD+ + +R + R+ AR ++TNPD
Sbjct: 30 NSALYLAPTKALTHDQERVC---HEVGPRNWLVSTLDGDSDEAERRFAREQARYVLTNPD 86
Query: 361 MLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTAL 420
MLH ++LP H +++ +L +LR +VVIDEAH Y+G FG H A
Sbjct: 87 MLHHTVLPSHARWAGLLGSLR-------------------YVVIDEAHQYRGVFGAHVAQ 127
Query: 421 ILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLW 480
++RRL RLC ++G+DP F+ S+ATS N E L + +E++ D SP + VLW
Sbjct: 128 VIRRLRRLC-RMHGADPVFLLSSATSTNAAEAGTRLLGVEKVEVVDEDYSPHPGRDVVLW 186
Query: 481 NPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCEL 540
P + + + + L A++ GL+ I F SR L E+
Sbjct: 187 QPAESISA------------------------DATGLVADLTDAGLQTICFVASRSLAEV 222
Query: 541 VLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVG 600
+ ++ ++ + A + YRAGY+ EDRRRIE G + V ATNALELG+D+
Sbjct: 223 ISAHAQDRVTSGA-----RVTAYRAGYLPEDRRRIEAKLQDGSMRAVVATNALELGVDIS 277
Query: 601 HIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIEC 660
+D + G+PG +++LWQQAGR+GR R +L V +A E PLDQY ++PE LF S +E
Sbjct: 278 GMDAVVIAGYPGRLSALWQQAGRAGRSGRDALVVLMAQENPLDQYLFEHPELLFSSSVES 337
Query: 661 CHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSA 720
+ N VL H+ AA E LS DE+++GS + TL + L
Sbjct: 338 TVLHPDNPYVLGPHVAAAAQEAYLSPA-DEEFYGSAFAGICKTLTGQNVLRR-----RGN 391
Query: 721 KIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGH 780
++F + E+ I +R+ + ++ID+ + V+ ++E+ A V+ GAVY+HQG
Sbjct: 392 RLF-WTRPERA-VDAIDLRSAAGKGIDIIDVSTGRVIGVVDEAAADRTVHPGAVYLHQGD 449
Query: 781 TYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQA-L 839
+LV E N AL + Y+T+ + +A +I +++ + +
Sbjct: 450 QWLVDEYNPVEHHALVHQDLPGYWTQPQ-----------SASTVRILREERRRDCGPGYV 498
Query: 840 AC---TVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSF 896
AC +T G+ R + ++D+V L +P ++ +QA W +P V ++ +
Sbjct: 499 ACGQVELTEQVVGYLRRDEITNDVWDSVALEMPTHTMITQACWWVIPDKVVDDLKLDAVH 558
Query: 897 RSG-LHAASHALLHVVPIYVRCNFSDLA 923
+G H A H + ++P+Y C+ D+
Sbjct: 559 LAGAAHGAEHTAIGLLPMYSPCDRWDVG 586
>gi|422466849|ref|ZP_16543411.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA4]
gi|422468587|ref|ZP_16545118.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA3]
gi|314982830|gb|EFT26922.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA3]
gi|315091149|gb|EFT63125.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA4]
Length = 673
Score = 311 bits (798), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 198/628 (31%), Positives = 319/628 (50%), Gaps = 76/628 (12%)
Query: 301 SSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPD 360
+SALY+ PTKAL DQ R + + + DGD+ + +R + R+ AR ++TNPD
Sbjct: 30 NSALYLAPTKALTHDQERVC---HEVGPRNWLVSTLDGDSDEAERRFAREQARYVLTNPD 86
Query: 361 MLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTAL 420
MLH ++LP H +++ +L +LR +VVIDEAH Y+G FG H A
Sbjct: 87 MLHHTVLPSHARWAGLLGSLR-------------------YVVIDEAHQYRGVFGAHVAQ 127
Query: 421 ILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLW 480
++RRL RLC ++G+DP F+ S+ATS N E L + +E++ D SP + VLW
Sbjct: 128 VIRRLRRLC-RMHGADPVFLLSSATSTNAAEAGTRLLGVEKVEVVDEDYSPHPGRDVVLW 186
Query: 481 NPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCEL 540
P + + + + L A++ GL+ I F SR L E+
Sbjct: 187 QPAESISA------------------------DATGLVADLTDAGLQTICFVASRSLAEV 222
Query: 541 VLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVG 600
+ ++ ++ + A + YRAGY+ EDRRRIE G + V ATNALELG+D+
Sbjct: 223 ISAHAQDRVTSGA-----RVTAYRAGYLPEDRRRIEAKLQDGSMRAVVATNALELGVDIS 277
Query: 601 HIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIEC 660
+D + G+PG +++LWQQAGR+GR R +L V +A E PLDQY ++PE LF S +E
Sbjct: 278 GMDAVVIAGYPGRLSALWQQAGRAGRSGRDALVVLMARENPLDQYLFEHPELLFSSSVES 337
Query: 661 CHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSA 720
+ N VL H+ AA E LS DE+++GS + TL + L
Sbjct: 338 TVLHPDNPYVLGPHVAAAAQEAYLSPA-DEEFYGSAFAGICKTLTGQNVLRR-----RGN 391
Query: 721 KIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGH 780
++F + E+ I +R+ + ++ID+ + V+ ++E+ A V+ GAVY+HQG
Sbjct: 392 RLF-WTRPERA-VDAIDLRSAAGKGIDIIDVSTGRVIGVVDEAAADRTVHPGAVYLHQGD 449
Query: 781 TYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQA-L 839
+LV E N AL + Y+T+ + +A +I +++ + +
Sbjct: 450 QWLVDEYNPVEHHALVHQDLPGYWTQPQ-----------SASTVRILREERRRDCGPGYV 498
Query: 840 AC---TVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSF 896
AC +T G+ R + ++D+V L +P ++ +QA W +P V ++ +
Sbjct: 499 ACGQVELTEQVVGYLRRDEITNDVWDSVALEMPTHTMITQACWWVIPDKVVDDLKLDAVH 558
Query: 897 RSG-LHAASHALLHVVPIYVRCNFSDLA 923
+G H A H + ++P+Y C+ D+
Sbjct: 559 LAGAAHGAEHTAIGLLPMYSPCDRWDVG 586
>gi|422566025|ref|ZP_16641664.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA2]
gi|314965419|gb|EFT09518.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA2]
Length = 673
Score = 311 bits (798), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 198/628 (31%), Positives = 319/628 (50%), Gaps = 76/628 (12%)
Query: 301 SSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPD 360
+SALY+ PTKAL DQ R + + + DGD+ + +R + R+ AR ++TNPD
Sbjct: 30 NSALYLAPTKALTHDQERVC---HEVGPRNWLVSTLDGDSDEAERRFAREQARYVLTNPD 86
Query: 361 MLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTAL 420
MLH ++LP H +++ +L +LR +VVIDEAH Y+G FG H A
Sbjct: 87 MLHHTVLPSHARWAGLLGSLR-------------------YVVIDEAHQYRGVFGAHVAQ 127
Query: 421 ILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLW 480
++RRL RLC ++G+DP F+ S+ATS N E L + +E++ D SP + VLW
Sbjct: 128 VIRRLRRLC-RMHGADPVFLLSSATSTNAAEAGTRLLGVEKVEVVDEDYSPHPGRDVVLW 186
Query: 481 NPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCEL 540
P + + + + L A++ GL+ I F SR L E+
Sbjct: 187 QPAESISA------------------------DATGLVADLTDAGLQTICFVASRSLAEV 222
Query: 541 VLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVG 600
+ ++ ++ + A + YRAGY+ EDRRRIE G + V ATNALELG+D+
Sbjct: 223 ISAHAQDRVTSGA-----RVTAYRAGYLPEDRRRIEAKLQDGSMRAVVATNALELGVDIS 277
Query: 601 HIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIEC 660
+D + G+PG +++LWQQAGR+GR R +L V +A E PLDQY ++PE LF S +E
Sbjct: 278 GMDAVVIAGYPGRLSALWQQAGRAGRSGRDALVVLMAQENPLDQYLFEHPELLFSSSVES 337
Query: 661 CHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSA 720
+ N VL H+ AA E LS DE+++GS + TL + L
Sbjct: 338 TVLHPDNPYVLGPHVAAAAQEAYLSPA-DEEFYGSAFAGICKTLTGQNVLRR-----RGN 391
Query: 721 KIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGH 780
++F + E+ I +R+ + ++ID+ + V+ ++E+ A V+ GAVY+HQG
Sbjct: 392 RLF-WTRPERA-VDAIDLRSAAGKGIDIIDVSTGRVIGVVDEAAADRTVHPGAVYLHQGD 449
Query: 781 TYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQA-L 839
+LV E N AL + Y+T+ + +A +I +++ + +
Sbjct: 450 QWLVDEYNPVEHHALVHQDLPGYWTQPQ-----------SASTVRILREERRRDCGPGYV 498
Query: 840 AC---TVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSF 896
AC +T G+ R + ++D+V L +P ++ +QA W +P V ++ +
Sbjct: 499 ACGQVELTEQVVGYLRRDEITNDVWDSVALEMPTHTMITQACWWVIPDKVVDDLKLDAVH 558
Query: 897 RSG-LHAASHALLHVVPIYVRCNFSDLA 923
+G H A H + ++P+Y C+ D+
Sbjct: 559 LAGAAHGAEHTAIGLLPMYSPCDRWDVG 586
>gi|227496404|ref|ZP_03926692.1| ATP-dependent helicase [Actinomyces urogenitalis DSM 15434]
gi|226834089|gb|EEH66472.1| ATP-dependent helicase [Actinomyces urogenitalis DSM 15434]
Length = 843
Score = 311 bits (797), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 239/811 (29%), Positives = 371/811 (45%), Gaps = 112/811 (13%)
Query: 218 GQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVAT 277
G+++HVE AR P + +A + G+S + HQ ++ A AG++ V+AT
Sbjct: 7 GRLIHVERTPARPGRHGSWPAWADPDLVTAYQRLGVSAPWIHQQQAAEALHAGRHTVIAT 66
Query: 278 MTSSGKSLCYNLPVLEAL---------------SHDLSSSALYMFPTKALAQDQLRALLA 322
T SGKSL LP L + S+ S LY+ PTKAL+ DQ AL
Sbjct: 67 GTGSGKSLAAWLPALSDVLAAQRVEGGQESRISSYARRPSVLYLSPTKALSADQAAALTR 126
Query: 323 MTKAFDA-------------SIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPY 369
+ +A ++ +G DGDT +R W R +A +++TNPD LH S+LP
Sbjct: 127 LVTELEAAQRPASSSHQPLRTVRVGTCDGDTPLPERDWARAHADVVLTNPDFLHFSLLPG 186
Query: 370 HGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLC 429
H +++R L +LR +VV+DE HAY+G G H +L+LRRL RL
Sbjct: 187 HERWTRFLRSLR-------------------YVVVDECHAYRGLLGAHVSLVLRRLLRLV 227
Query: 430 SHVY--GSDPSFVFSTATSANPREHCMELANL--STLELIQNDGSPCAQKLFVLWNPT-- 483
+ G P + ++AT+A P L + ++L + D +P +++ LW P
Sbjct: 228 LRLRPEGPAPVILCASATAAEPALTAARLIGVPPASLTAVTQDTAPAGERVLALWQPALR 287
Query: 484 ----------------------SCLRSVLNKSQT--------------DMDDTRNAANKT 507
LRS ++ + D D +
Sbjct: 288 DPWSAWEESVSALAQATDFPAADPLRSTPTQASSAKAPEQPHTCAVGPDTGDPTEDPSAR 347
Query: 508 SSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGY 567
S + E + L +++ G R + F RSR+ E+V + R L + P LV ++ YR GY
Sbjct: 348 RSAVVEAAELLVDLMSVGARALVFVRSRRSAEIVAEHARHTLSLSLPELVGTVRAYRGGY 407
Query: 568 VAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRR 627
+ E+RR +E D G+L +A TNALELGIDV +D + G+PG+ SL QQAGR+GR
Sbjct: 408 LPEERRALETDLRRGRLRALATTNALELGIDVTGLDAVIIAGWPGTRVSLGQQAGRAGRA 467
Query: 628 ERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLI 687
LAV +A + PLD Y + +P+++F +P E D N VL HL AA E PL
Sbjct: 468 GSRGLAVLIASDNPLDAYLVHHPDEVFAAP-EATVFDPANPYVLAPHLCAAASESPLR-G 525
Query: 688 YDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHT---ISIRAIESE 744
D + FG S + L RG L PS + + +P S+R
Sbjct: 526 EDLELFGLDDESFLEDLAARGALRRRPS--------GWFWNTNLPGRAQDLTSLRGDGPP 577
Query: 745 RYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYF 804
V+D + V+ + + A V+EGAVY+HQG TY+V+EL+ + + + QKA + Y
Sbjct: 578 DVPVVDASTGTVVGTVPGASADSAVHEGAVYIHQGRTYVVEELSQEAAL-VTQKAAVGYR 636
Query: 805 TKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTV 864
T+ ++ + + V A + +D T + VT+ G+ + +
Sbjct: 637 TRAKESSSVRV------IAEREHQDWGRGITWSG-SVEVTSQVVGYTKHALPGMEVVSQH 689
Query: 865 ELYLPKYSYESQAVWIQVPQSVKAVVE-QNFSFRSGLHAASHALLHVVPIYVRCNFSDLA 923
L +P++ + AVW VP V + LHAA HA + ++P+ C+ D+
Sbjct: 690 SLSMPEHVLPTAAVWWTVPVEVTQDAGLTSADLPGALHAAEHASIGMLPLLATCDRWDIG 749
Query: 924 PECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
H P + ++D GG G ++
Sbjct: 750 GLSIALHPQTMSPT-VFVHDGQAGGAGFAEH 779
>gi|410697248|gb|AFV76316.1| helicase family protein with metal-binding cysteine cluster
[Thermus oshimai JL-2]
Length = 733
Score = 311 bits (797), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 231/713 (32%), Positives = 358/713 (50%), Gaps = 96/713 (13%)
Query: 246 SALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALY 305
L++ G++ ++HQ ++ A G ++V+A T+SGKSL + PVL+A ++L
Sbjct: 48 GVLEALGLTP-FAHQKRALEALEEGHHLVMAYATASGKSLVFQAPVLKAALE--GGTSLL 104
Query: 306 MFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMS 365
+FPTKALA DQL+ L AM KA I YDGDT + R R+ +L+TNPDMLH
Sbjct: 105 LFPTKALAHDQLKRLKAMGKALGVE-GIFPYDGDTRSEVRKEARERGTVLLTNPDMLHFG 163
Query: 366 ILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRL 425
+LP HG ++ L+ LR ++V+DE HAY+G FG H A +LRRL
Sbjct: 164 LLPRHGAWAHFLARLR-------------------YLVLDELHAYRGVFGTHVAWVLRRL 204
Query: 426 CRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSC 485
RL H YG++P + ++AT N + H EL L LEL + ++L VL P
Sbjct: 205 LRLARH-YGANPQVIAASATIRNAKAHAEELTGLPFLELWEEVAR-SERELLVL--PPKA 260
Query: 486 LRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYT 545
L D + + SP+ E ++L + + GLR I F +RK ELV Y
Sbjct: 261 L------------DKKG--ERRRSPLLEAAHLARTLAEGGLRGIVFANARKAAELVARYA 306
Query: 546 REILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVT 605
L + YRAGY A+ RR +E G++ + AT+ALELG+D+G +D
Sbjct: 307 DHPL----------VRPYRAGYTAKARRALEEGLKRGEVRVLVATSALELGVDIGELDAV 356
Query: 606 LHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDA 665
+ LG+PGSIAS WQ+AGR+GR R +L VY+ E PLD+YF+ PE L +SP E D
Sbjct: 357 VLLGYPGSIASFWQRAGRAGRGGRRALVVYIPREDPLDEYFLHRPELLLQSPPEEAVADP 416
Query: 666 QNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEY 725
+N + HL AA E PL+ E+ + L+ +G P
Sbjct: 417 KNPVLCPLHLHAAAYELPLT---REEI---PCPEALGELREKGGRFYTP----------- 459
Query: 726 IGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVK 785
++ P +S+R + + + EVL ++E +A+++ + GAVY+HQG ++LV+
Sbjct: 460 ---KRHPHRDLSLRGLGTTF--TLRGPDGEVLGHLDERQAYWEAHPGAVYLHQGESFLVR 514
Query: 786 ELNLSSKIALCQKADLKYFTKTRDYTDIHV-SGGNNAYATKISKDQLTKTTAQALACTVT 844
++ + A Y+T+ R TD+ V SG + + + L + +
Sbjct: 515 NIDPLKREIWLLPALEDYYTEPRAETDLEVLSGEPVGHGVWVGRVLLRERVVGYVKKR-- 572
Query: 845 TTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAAS 904
FY +G + + V L+LP+ ++ ++A+W P+ V G+HA
Sbjct: 573 -----FY-----TGSVLEEVPLFLPEIAFPTEALWFHPPE-----VLPPHRIPGGIHALE 617
Query: 905 HALLHVVPIYVRCNFSDLA----PECPNPHDSRYFPERILLYDRHPGGTGVSK 953
HA++ ++P++V D+ P P P S P + +YD +PGG G ++
Sbjct: 618 HAMIGLLPLFVLAERQDIGGLSYPVYPRPLPSGGGPT-VFIYDGYPGGVGYAR 669
>gi|296130605|ref|YP_003637855.1| hypothetical protein Cfla_2771 [Cellulomonas flavigena DSM 20109]
gi|296022420|gb|ADG75656.1| Protein of unknown function DUF1998 [Cellulomonas flavigena DSM
20109]
Length = 866
Score = 310 bits (794), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 249/839 (29%), Positives = 371/839 (44%), Gaps = 131/839 (15%)
Query: 203 PLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAE 262
P E++E L G + HV ++ AR V + P + ++ G+ + + HQ +
Sbjct: 3 PGELLEVLLAGGRRADRATHVRELPARPGVRADWPAWADADLVRGYRALGVERPWEHQVD 62
Query: 263 SIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL---------------SHDLSSSALYMF 307
+ A+ +G++ V+AT T SGKSL + LP + A+ S + LY+
Sbjct: 63 AAEAAWSGRHTVLATSTGSGKSLAFWLPAVSAVRRGAVGALLDPGRIESATRRPTVLYLG 122
Query: 308 PTKALAQDQLRAL---LAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHM 364
PTKALA DQL L LA D + + DGDT++ +R W+R++A +++TNPD LH
Sbjct: 123 PTKALAADQLAGLERLLAAAGTRD--VRVATCDGDTSRDERRWVREHADVVLTNPDFLHF 180
Query: 365 SILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRR 424
++LP H +SR+LS+L FVV+DE HA++G FG H AL+L R
Sbjct: 181 ALLPAHTSWSRVLSSL-------------------AFVVVDECHAFRGVFGAHVALVL-R 220
Query: 425 LCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLEL--IQNDGSPCAQKLFVLWNP 482
R + Y + P V ++AT+++P L + ++ + D SP ++ VLW P
Sbjct: 221 RLRRLAAAYDAAPVVVLASATTSDPAASAARLLGVEPGDVHAVTADTSPAGRRTVVLWQP 280
Query: 483 TSCLRSVLNKSQTDMDDTRNAANKTSSPISE----------------------------V 514
L S + + D + + P S+
Sbjct: 281 PE-LPSGDGPWASLLPDEDPWSTVITVPASDGAARALAGADDSGTQDAAGATDGAGAPAG 339
Query: 515 SYLFAE---MVQHGLRCIAFCRSRK-----------LCEL------VLSYTREI------ 548
AE V G R +A R R L +L VL++TR
Sbjct: 340 PAPVAEGSGPVGTGERLVAVPRDRPRRTATAEVADLLADLVAAGARVLAFTRSRRGAESV 399
Query: 549 -------LEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGH 601
L E P L + YR GY+ E+RR +ER G L +A TNALELG+D+
Sbjct: 400 AATTRAHLAEVDPTLPSLVSSYRGGYLPEERRALERAIRAGHLRALATTNALELGVDISG 459
Query: 602 IDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECC 661
+D L G+PG+ SLWQQAGR+GR L V V+ E PLD Y + +PE P+E
Sbjct: 460 LDAVLIAGWPGTRVSLWQQAGRAGRAGADGLVVLVSREDPLDTYLVHHPEAALDVPVEAT 519
Query: 662 HIDAQNHKVLEQHLVCAALEHPLSLIYDE-KYFGSGLSSGITTLKNRGYLSSDPSLDSSA 720
D N VL HL AA E PL DE FG + L RG L S
Sbjct: 520 VFDPGNPYVLAPHLCAAAAERPLR--ADELDLFGPRAPELLAELTARGILRRRSS----- 572
Query: 721 KIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGH 780
Y H + S +R + V++ + +L ++ + A V+ GAVY+H G
Sbjct: 573 --GWYWTHAEPASRMTDLRGAGGDPVRVVETATGRLLGTVDAASADATVHPGAVYVHLGT 630
Query: 781 TYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALA 840
TY+V EL+L +AL + + + T R T V +++ LT + Q
Sbjct: 631 TYVVDELHLQDGVALATRRAVDHGTWARWVTSTTVVDVER----EVAWGPLTWSYGQ--- 683
Query: 841 CTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSG- 899
VTT G+ R + T +L LP + + AVW P V A G
Sbjct: 684 VDVTTQVIGYQRRRLPDLQVLSTHDLDLPARTLRTTAVWWTTPPEVLAEAGVTLEVAPGA 743
Query: 900 LHAASHALLHVVPIYVRCNFSDLAP----ECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
LHAA HA + ++P+ C+ DL + P+ + F ++D HPGG G +++
Sbjct: 744 LHAAEHASIGLLPLLATCDRWDLGGLSTLQHPDTGQATVF-----VHDGHPGGAGFAER 797
>gi|354606213|ref|ZP_09024184.1| hypothetical protein HMPREF1003_00751 [Propionibacterium sp.
5_U_42AFAA]
gi|353557620|gb|EHC26988.1| hypothetical protein HMPREF1003_00751 [Propionibacterium sp.
5_U_42AFAA]
Length = 680
Score = 310 bits (794), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 209/666 (31%), Positives = 331/666 (49%), Gaps = 85/666 (12%)
Query: 264 IMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDL-SSSALYMFPTKALAQDQLRALLA 322
IMA+ A VV + G LP +L L +SALY+ PTKALA DQ R
Sbjct: 7 IMAATASATPVVPESPTPG------LPA--SLRDSLHRNSALYLAPTKALAHDQERVC-- 56
Query: 323 MTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRL 382
+ + DGD+ + +R R+ AR ++TNPDMLH ++LP H +++ +L +LR
Sbjct: 57 -REVGPRDWLVSTLDGDSDEAERRSAREQARYVLTNPDMLHHTVLPSHARWAGLLGSLR- 114
Query: 383 IAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFS 442
+VVIDEAH Y+G FG H A ++RRL RLC ++G+DP F+ S
Sbjct: 115 ------------------YVVIDEAHRYRGVFGAHVAQVIRRLRRLC-RMHGADPVFLLS 155
Query: 443 TATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRN 502
+ATS N E L + +E++ D SP + VLW P + +
Sbjct: 156 SATSTNAAEAGTRLLGVEKVEVVDEDCSPHPGRDVVLWQPAESIST-------------- 201
Query: 503 AANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICV 562
+ + L A++ GL+ I F SR L E++ ++ ++ + +
Sbjct: 202 ----------DATGLVADLADAGLQTICFVASRSLAEVISAHAQDRVTSGT-----RVTA 246
Query: 563 YRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAG 622
YRAGY+ EDRRRIE G + V ATNALELG+D+ +D + G+PG +++LWQQAG
Sbjct: 247 YRAGYLPEDRRRIEARLQDGSVRAVVATNALELGVDISGMDAVVIAGYPGRLSALWQQAG 306
Query: 623 RSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEH 682
R+GR R +L V +A E PLDQY ++PE LF S +E + N VL H+ AA E
Sbjct: 307 RAGRSGRDALVVLMARENPLDQYLFEHPELLFSSSVESTVLHPDNPYVLGPHVAAAAQEA 366
Query: 683 PLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIE 742
LS DE+++GS + TL + L ++F + E+ I +R+
Sbjct: 367 YLSPA-DEEFYGSAFAGICKTLTGQNVLRR-----RGNRLF-WTRPERA-VDAIDLRSAA 418
Query: 743 SERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLK 802
+ ++ID+ + V+ ++E+ A V+ GAVY+HQG +LV E N AL +
Sbjct: 419 GKGIDIIDVSTGRVIGGVDEAAADRTVHPGAVYLHQGDQWLVDEYNPVEHHALVHQDLPG 478
Query: 803 YFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQA-LAC---TVTTTWFGFYRLWRGSG 858
Y+T+ + +A +I +++ + +AC +T G+ R +
Sbjct: 479 YWTQPQ-----------SASTVRILREERRRACGPGYVACGQVELTEQVVGYLRRDEITN 527
Query: 859 IIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSG-LHAASHALLHVVPIYVRC 917
++D+V L +P ++ +QA W +P V ++ + +G H A H + ++P+Y C
Sbjct: 528 DVWDSVALEMPTHTMITQACWWVIPDKVVDDLKFDAVHLAGAAHGAEHTAIGLLPMYSPC 587
Query: 918 NFSDLA 923
+ D+
Sbjct: 588 DRWDVG 593
>gi|255326725|ref|ZP_05367801.1| conserved hypothetical protein [Rothia mucilaginosa ATCC 25296]
gi|255295942|gb|EET75283.1| conserved hypothetical protein [Rothia mucilaginosa ATCC 25296]
Length = 923
Score = 310 bits (794), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 238/837 (28%), Positives = 371/837 (44%), Gaps = 143/837 (17%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQ------------------ 260
Q+ H+ I+AR+A P L A +S GI++ Y+HQ
Sbjct: 69 QVTHIHTIAAREASYAPWPQWLHPRVVEAFESLGIAEPYAHQVQAANAAHAGLDAALAAS 128
Query: 261 -----------------------AESIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL-- 295
AE + +G +V+VAT T+SGK+L Y +P L+A+
Sbjct: 129 AARYGWQAGRIEAGRVEEAVPARAEDAKSIGSGGHVIVATGTASGKTLSYLMPTLDAIYR 188
Query: 296 ---SHDLSSSA--------------LYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDG 338
+SS++ LY+ P KAL+ DQL AL + + YDG
Sbjct: 189 ASCGEPVSSTSAYSGAKNLNNRANVLYISPAKALSADQLTALTSYNLP---GLHAASYDG 245
Query: 339 DTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLF 398
DT +R W+R++A ++T PDML+ SIL H Q++ L LR
Sbjct: 246 DTPTGERRWIREHANFILTTPDMLNYSILSNHRQWASFLRGLR----------------- 288
Query: 399 IRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELAN 458
+VV+DEAH+Y+G FG H A +LRRL R+C+ +Y + P F ++ATS+NP E +L
Sbjct: 289 --YVVLDEAHSYRGVFGAHIANLLRRLRRVCA-LYRTVPVFYGASATSSNPVESFSKLIG 345
Query: 459 LS--TLELIQNDGSPCAQKLFVLWNP-----------TSCLRSVLNKSQTDMDDTRNAAN 505
+ + I S + W P RS + Q A
Sbjct: 346 VPQQAVTAITESTSARGETTVARWEPEFMPPKAHDQLAKGARS--TQQQAVQSKAEQEAP 403
Query: 506 KTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRA 565
+ SP+ + + + ++V R + F SR+ E++ T+ L+E L + YRA
Sbjct: 404 RRVSPVEQGAQMLTDLVLSRTRSLVFAGSRRSVEILSQKTQRYLDEVEAGLSHRVAAYRA 463
Query: 566 GYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSG 625
GY E+RR +ER G+L G+A+T+ALELGID+ +D L G+PG+ AS Q+ GR+G
Sbjct: 464 GYTPEERRELERKLRNGELLGLASTSALELGIDISGLDAVLVAGWPGTRASFMQRVGRAG 523
Query: 626 RRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLS 685
R + +LAV +A + PLD Y + +PE +F +E D N VL L AA E P+
Sbjct: 524 RSGQDALAVLIADDNPLDTYLVHHPEAIFGREVEATVFDPTNPYVLSPQLCAAAQEAPIR 583
Query: 686 LIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESER 745
+ FG ++ + L +GYL P Y H + + + IR
Sbjct: 584 -AEELSLFGPHTATLLDRLVQQGYLRRRPD-------GWYWTHAESAAELVDIRGTGGGP 635
Query: 746 YEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFT 805
Y++ID + ++ ++ + A Q + GA+Y+HQ Y+V+ L+ ++ L + Y+T
Sbjct: 636 YQLIDAEDGTLVGTMDAAHAMSQGHPGAIYIHQNAQYVVESLSEGERVILLSRVYPDYYT 695
Query: 806 KTRDYTDI-------HVSGGNNAYAT----KISKDQLTKTTAQALA--------CTVTTT 846
+ + T++ VS G A A + +T AQ LA VT
Sbjct: 696 RAIESTEVRILAERARVSYGAPAGAAIPGEPTPGESAPETDAQQLAPLTMHRGQVQVTDQ 755
Query: 847 WFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSG------- 899
G+ R G +P ++AVW E ++ F +G
Sbjct: 756 VTGYQRFSVYGGEYLGEEAQPMPPEVLMTEAVWF--------TFEPSYLFGAGVTEEDGP 807
Query: 900 --LHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
LHAA HA + ++P+ + DL H P I +YD PGG G+S++
Sbjct: 808 GTLHAAEHAAIGLLPLIATSDRWDLGGLSTLLHVDTGRPT-IFVYDAAPGGAGISER 863
>gi|257053338|ref|YP_003131171.1| DEAD/DEAH box helicase domain protein [Halorhabdus utahensis DSM
12940]
gi|256692101|gb|ACV12438.1| DEAD/DEAH box helicase domain protein [Halorhabdus utahensis DSM
12940]
Length = 789
Score = 310 bits (793), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 217/734 (29%), Positives = 343/734 (46%), Gaps = 66/734 (8%)
Query: 242 DNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLE-ALSHDLS 300
D SAL+ G+ + Y HQA++I A G+NVV+AT T+SGKSL Y +P E A+ H
Sbjct: 38 DRLASALEDQGVDRFYRHQADAIEAVRDGENVVLATPTASGKSLAYTVPAFERAMDH--V 95
Query: 301 SSALYMFPTKALAQDQLRAL--LAMTKAFDASIDIGVYDGDTTQKDRMWLRD-NARLLIT 357
+ LY+ P AL DQ L LA F + + + Y G ++ ++ +R+ +L+T
Sbjct: 96 GTTLYIAPQVALINDQAETLSDLAHGLGFGSRVTVDRYTGRLSKGEKETVRERQPTVLLT 155
Query: 358 NPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCH 417
PDMLH I+P+ RL + F + +VIDE HAY+G FG H
Sbjct: 156 TPDMLHYGIMPH---------AHRLWEW---------FFQRLETIVIDEVHAYRGVFGSH 197
Query: 418 TALILRRLCRLCSHVYGSDP-------------SFVFSTATSANPREHCMELANLS--TL 462
+L+LRRL RL +P +V +AT NP H + N +
Sbjct: 198 VSLVLRRLNRLAERFDSGEPRSPERRTQSAGTPQYVCCSATIGNPVGHAATVTNQPEPSF 257
Query: 463 ELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMV 522
L+ D S + +V+WNP + S E LFA++V
Sbjct: 258 RLLTKDDSATGPRQWVVWNPPEKRGG-------------GGHGQRRSHHVEAKRLFADLV 304
Query: 523 QHGLRCIAFCRSRKLCELVLSYT-REILEETAPHLVDSICVYRAGYVAEDRRRIERDFFG 581
Q GL+ F SR++ E + + RE+ E A L I Y+A ++ RR +E
Sbjct: 305 QRGLQTAVFTGSRQVAERYATESERELRERGAGELATKIGAYQAALTSDRRRELEAGLHD 364
Query: 582 GKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGP 641
G + GV T+ALELG+DVG +D + G+PG+ +Q+AGR+GR E P+L V E
Sbjct: 365 GSIRGVWTTSALELGVDVGGLDAVVLDGYPGTRMETFQRAGRAGRGEDPALVALVTGEDQ 424
Query: 642 LDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGI 701
LDQY ++PE LF E + N ++L H+ AA E+ LS D+++FG +
Sbjct: 425 LDQYVARHPEALFDREPEQALTNPANDQILPDHVRSAARENWLS-PGDDRHFGETFPDVV 483
Query: 702 TTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIE 761
L++RG L + + +++ G P+H S+R+ + ++ + SN+V+ +
Sbjct: 484 ADLESRGDLERRTTDAGTRWLYDGGG---SPAHETSLRSADDREIKLRERGSNDVIASLP 540
Query: 762 ESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGG--N 819
A + GA+Y HQG Y V +L+L +A + +T+ I V
Sbjct: 541 FGDALRDAHPGAIYHHQGTKYEVVDLDLDHDVATLDRTYADQYTRVLHEKTITVEADLRE 600
Query: 820 NAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVW 879
+ + S + T+ GF R SG L +P+ S ++A++
Sbjct: 601 KPFPGRES------VPVRFADVTMHKQITGFERHDARSGEAISRESLDVPETSLRTRALY 654
Query: 880 IQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERI 939
+P ++A + F G+HAA HA++ +P+ C+ D+ PH I
Sbjct: 655 YALPPELEADLRAAGDFPGGIHAAEHAMIATMPLSFLCDRRDIG-GLSTPHHPHTDRSTI 713
Query: 940 LLYDRHPGGTGVSK 953
+YD +PGG G+++
Sbjct: 714 FIYDGYPGGVGIAE 727
>gi|422389687|ref|ZP_16469784.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Propionibacterium
acnes HL103PA1]
gi|327329214|gb|EGE70974.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Propionibacterium
acnes HL103PA1]
Length = 673
Score = 310 bits (793), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 197/628 (31%), Positives = 319/628 (50%), Gaps = 76/628 (12%)
Query: 301 SSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPD 360
+SAL++ PTKAL DQ R + + + DGD+ + +R + R+ AR ++TNPD
Sbjct: 30 NSALHLAPTKALTHDQERVC---HEVGPRNWLVSTLDGDSDEAERRFAREQARYVLTNPD 86
Query: 361 MLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTAL 420
MLH ++LP H +++ +L +LR +VVIDEAH Y+G FG H A
Sbjct: 87 MLHHTVLPSHARWAGLLGSLR-------------------YVVIDEAHQYRGVFGAHVAQ 127
Query: 421 ILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLW 480
++RRL RLC ++G+DP F+ S+ATS N E L + +E++ D SP + VLW
Sbjct: 128 VIRRLRRLC-RMHGADPVFLLSSATSTNAAEAGTRLLGVEKVEVVDEDYSPHPGRDVVLW 186
Query: 481 NPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCEL 540
P + + + + L A++ GL+ I F SR L E+
Sbjct: 187 QPAESISA------------------------DATGLVADLTDAGLQTICFVASRSLAEV 222
Query: 541 VLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVG 600
+ ++ ++ + A + YRAGY+ EDRRRIE G + V ATNALELG+D+
Sbjct: 223 ISAHAQDRVTSGA-----RVTAYRAGYLPEDRRRIEAKLQDGSMRAVVATNALELGVDIS 277
Query: 601 HIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIEC 660
+D + G+PG +++LWQQAGR+GR R +L V +A E PLDQY ++PE LF S +E
Sbjct: 278 GMDAVVIAGYPGRLSALWQQAGRAGRSGRDALVVLMAQENPLDQYLFEHPELLFSSSVES 337
Query: 661 CHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSA 720
+ N VL H+ AA E LS DE+++GS + TL + L
Sbjct: 338 TVLHPDNPYVLGPHVAAAAQEAYLSPA-DEEFYGSAFAGICKTLTGQNVLRR-----RGN 391
Query: 721 KIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGH 780
++F + E+ I +R+ + ++ID+ + V+ ++E+ A V+ GAVY+HQG
Sbjct: 392 RLF-WTRPERA-VDAIDLRSAAGKGIDIIDVSTGRVIGVVDEAAADRTVHPGAVYLHQGD 449
Query: 781 TYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQA-L 839
+LV E N AL + Y+T+ + +A +I +++ + +
Sbjct: 450 QWLVDEYNPVEHHALVHQDLPGYWTQPQ-----------SASTVRILREERRRDCGPGYV 498
Query: 840 AC---TVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSF 896
AC +T G+ R + ++D+V L +P ++ +QA W +P V ++ +
Sbjct: 499 ACGQVELTEQVVGYLRRDEITNDVWDSVALEMPTHTMITQACWWVIPDKVVDDLKLDAVH 558
Query: 897 RSG-LHAASHALLHVVPIYVRCNFSDLA 923
+G H A H + ++P+Y C+ D+
Sbjct: 559 LAGAAHGAEHTAIGLLPMYSPCDRWDVG 586
>gi|255076493|ref|XP_002501921.1| predicted protein [Micromonas sp. RCC299]
gi|226517185|gb|ACO63179.1| predicted protein [Micromonas sp. RCC299]
Length = 880
Score = 309 bits (791), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 221/659 (33%), Positives = 333/659 (50%), Gaps = 95/659 (14%)
Query: 164 KERRTDVRGNEVKRARRSQSSTSSSHSFQRRCSDKSQLLPLEMVEHLRKGIGSQGQMVHV 223
K+RR D R R +Q +S+ + P + V + + S+ Q+ HV
Sbjct: 95 KKRRHDPRPTPPSIPRPTQRPATSAPAS-----------PGDDVRAYVESLRSKPQVKHV 143
Query: 224 EDISARKAVLVEIPDALLDN-TKSALKSTGISKLYSHQAESIMASLAGK-NVVVATMTSS 281
E I+ + LD T+ L+ G++KLYSHQ E+I A+ GK +VV+AT T+S
Sbjct: 144 EWIAPAEERCDGPSGFKLDEATRLVLQEVGVTKLYSHQKEAIHAATKGKRSVVIATPTAS 203
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL---------LAMTKAFD---- 328
GKSL Y +P+L+ L SS A+ +FP KALA DQL LA + A++
Sbjct: 204 GKSLAYAVPLLQRLGEKRSSRAIVLFPLKALANDQLAKFRKFPEAAERLAESGAYEGSTL 263
Query: 329 ------ASIDIGVYDGDTTQKDRMWLR-DNARLLITNPDMLHMSILPYHGQFSRILSNLR 381
ASI + DGDT + DR+ ++ + +LL+TNPD LH +LP G S+ +
Sbjct: 264 KKLRGMASITVRTLDGDTKESDRVVIKSEKTQLLLTNPDSLHHYLLP--GYQSKKFTKT- 320
Query: 382 LIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVF 441
+ + VV+DEAH +G FG H A + RR+ RLC G P F+
Sbjct: 321 -------------FWQHLELVVVDEAHTCRGVFGSHVANVFRRVIRLCRACDGPGPEFIC 367
Query: 442 STATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTR 501
++AT NP + +L + + +N G+P +K +LW P L S+ +D
Sbjct: 368 TSATIDNPAQLVKQLTTKDPVAVTRN-GAPSGEKAMILWQPPE-LGSIA------AEDGS 419
Query: 502 NAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LVDSI 560
A N A +VQ+ +RC+AF +RKL E V + IL + L+ +
Sbjct: 420 IAENGNG----------ASLVQNRIRCLAFVYARKLTESVCRDVKAILLKAGRQDLIARV 469
Query: 561 CVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQ 620
YR GY A+ RR +E G++ + T+ALE+GIDVG +D T+H+G P + A++WQQ
Sbjct: 470 DSYRGGYDADLRRNLEGRLASGEVSCLVCTSALEMGIDVGDLDATVHVGVPETAAAMWQQ 529
Query: 621 AGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAAL 680
AGR+GRR SLAV VA E PLD ++ +PE LF+ E ID N +LEQHL CAA
Sbjct: 530 AGRAGRRLGCSLAVVVACERPLDSFYCSHPEALFRRSAEAALIDPSNPAILEQHLACAAF 589
Query: 681 EHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPS-HTISIR 739
E P+ +KN L P +++ E K + T +
Sbjct: 590 ETPID------------------VKNEADLFDHP--EAARAYREQAARNKDEAVRTPFLV 629
Query: 740 AIESERYEVIDMQSN-EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQ 797
A++S+ D+++ +V+E++E +A +VYEG VY+ Q YLV+ L+ ++ A C+
Sbjct: 630 ALKSQ-----DVKTGAKVIEKVEAHRAMSRVYEGCVYLFQDRQYLVEALDERTRTARCR 683
>gi|422324190|ref|ZP_16405227.1| hypothetical protein HMPREF0737_00337 [Rothia mucilaginosa M508]
gi|353344246|gb|EHB88558.1| hypothetical protein HMPREF0737_00337 [Rothia mucilaginosa M508]
Length = 931
Score = 308 bits (790), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 236/842 (28%), Positives = 371/842 (44%), Gaps = 148/842 (17%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQA----------------- 261
Q+ H+ I+AR+A P L A +S GI++ Y+HQ
Sbjct: 72 QVTHIHTIAAREASYAPWPQWLHPRVVEAFESLGIAEPYAHQVQAADAAHAGLDAALAAS 131
Query: 262 ------------------------ESIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL-- 295
E ++ +G +V+VAT T+SGK+L Y +P L+A+
Sbjct: 132 AARYGWQAGRIEAERVEAPTPAHVEGAKSAGSGGHVIVATGTASGKTLSYLMPTLDAIYR 191
Query: 296 ---------------SHDLSSSA--LYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDG 338
+ +L++SA LY+ P KAL+ DQL AL + + YDG
Sbjct: 192 ASCGEPVSSTSAYSVAENLNNSANVLYISPAKALSADQLTALTSYNLP---GLHAASYDG 248
Query: 339 DTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLF 398
DT +R W+R++A ++T PDML+ SIL H Q++ L LR
Sbjct: 249 DTPTGERRWIREHANFILTTPDMLNYSILSNHRQWASFLRGLR----------------- 291
Query: 399 IRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELAN 458
+VV+DEAH+Y+G FG H A +LRRL R+C+ +Y + P F ++ATS+NP E +L
Sbjct: 292 --YVVLDEAHSYRGVFGAHIANLLRRLRRVCA-LYRTVPVFYGASATSSNPVESFSKLIG 348
Query: 459 LS--TLELIQNDGSPCAQKLFVLWNP-----------TSCLRSVLNKSQTDMDDTRNAAN 505
+ + I S + LW P RS + Q A
Sbjct: 349 VPQQAVTAITESTSARGETTVALWEPEFMPPKAHDQLAKGARS--PQQQAVQSKAEQEAP 406
Query: 506 KTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRA 565
+ SP+ + + + ++V R + F S + E++ T+ L+E L + YRA
Sbjct: 407 RRVSPVEQGAQMLTDLVLSRTRSLVFAGSHRSVEILSQKTQRYLDEVEAGLSHRVAAYRA 466
Query: 566 GYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSG 625
GY E+RR +ER G+L G+A+T+ALELGID+ +D L G+PG+ AS Q+ GR+G
Sbjct: 467 GYTPEERRELERKLRNGELLGLASTSALELGIDISGLDAVLVAGWPGTRASFMQRVGRAG 526
Query: 626 RRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLS 685
R + +LAV +A + PLD Y + +PE +F +E D N VL L AA E P+
Sbjct: 527 RSGQDALAVLIADDNPLDTYLVHHPEAIFGQEVEATVFDPTNPYVLSPQLCAAAQEAPIR 586
Query: 686 LIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESER 745
+ FG ++ + L +GYL P Y H + + + IR
Sbjct: 587 -AEELSLFGPHTAALLDRLVQQGYLRRRPD-------GWYWTHAESAADLVDIRGTGGGP 638
Query: 746 YEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFT 805
Y++ID + ++ ++ + A Q + GA+Y+HQ Y+V+ L+ ++ L + Y+T
Sbjct: 639 YQLIDAEDGTLVGTMDAAHAMSQGHPGAIYIHQNAQYVVESLSEGERVILLSRVYPDYYT 698
Query: 806 KTRDYTDI-------HVS-GGNNAYATKI----------------SKDQLTKTTAQALAC 841
+ + T++ VS G NA + + QL T
Sbjct: 699 RAIESTEVCILAERARVSYGAQNAVGEAVPGEAAPGASVPVESASGEQQLAPLTMHRGQV 758
Query: 842 TVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSG-- 899
VT G+ R G +P ++AVW E ++ F +G
Sbjct: 759 QVTDQVTGYRRFSVYGGEYLGEEAQPMPPEVLMTEAVWF--------TFEPSYLFGAGVT 810
Query: 900 -------LHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVS 952
LHAA HA + ++P+ + DL H P I +YD PGG G+S
Sbjct: 811 EEDGPGTLHAAEHAAIGLLPLIATSDRWDLGGLSTLLHVDTGRPT-IFVYDAAPGGAGIS 869
Query: 953 KQ 954
++
Sbjct: 870 ER 871
>gi|410867402|ref|YP_006982013.1| Helicase [Propionibacterium acidipropionici ATCC 4875]
gi|410824043|gb|AFV90658.1| Helicase [Propionibacterium acidipropionici ATCC 4875]
Length = 761
Score = 306 bits (783), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 219/738 (29%), Positives = 354/738 (47%), Gaps = 115/738 (15%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATM 278
Q+VH + A ++ E P L + + ++ + GI + + HQ + +G++ + T
Sbjct: 11 QVVHADHRDASAGLVTEWPQWLPADCRDSILAAGIERPWVHQRTLADLAFSGRHSAICTS 70
Query: 279 TSSGKSLCYNLPVLEA--------------LSHDLSS----SALYMFPTKALAQDQLRAL 320
T+SGK+L Y LPV+ A L L+S SALY+ PTKALA DQ RA
Sbjct: 71 TASGKTLAYLLPVMAATASHTPVLGVEDTSLRAQLTSRRRHSALYLAPTKALAHDQWRAC 130
Query: 321 LAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNL 380
+ A + DGD+ Q +R + RD+A ++TNPDMLH S+LP H ++S +L +L
Sbjct: 131 RELGPEGWA---VSALDGDSDQAERRFARDHATYVLTNPDMLHHSVLPNHARWSSLLGSL 187
Query: 381 RLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFV 440
R +VV+DEAH Y+G FG H A +LRRL RLC ++G+DP F+
Sbjct: 188 R-------------------YVVVDEAHRYRGVFGAHVAQVLRRLRRLCR-MHGADPVFI 227
Query: 441 FSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDT 500
++ATS N E L + +E++ D SP + VLW P
Sbjct: 228 LASATSTNAAEAGARLIG-APVEVVDRDDSPHPARDVVLWQPEE---------------- 270
Query: 501 RNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDS- 559
S ++ + L A + G + I F SR L E++ + ++ + + D
Sbjct: 271 --------SATADAARLVARLADEGRQTICFVASRSLAEVIAVHAQDQV------IGDGV 316
Query: 560 ICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQ 619
I YR+GY+ E+RR IE G + V ATNALELG+DV +D + +G+PG +++LWQ
Sbjct: 317 IASYRSGYLPEERRAIEAGLQDGSVRAVVATNALELGVDVSGMDAVVIVGYPGRLSTLWQ 376
Query: 620 QAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAA 679
QAGR+GR R +L +A E PLDQY +PE LF +E + N V+ HL AA
Sbjct: 377 QAGRAGRAGRDALVTVLAREDPLDQYLFGHPELLFGRSVETTVLHPDNPYVMGPHLAAAA 436
Query: 680 LEHPLSLIYDEKYFGSGLSS------GITTLKNRG----YLSSDPSLDSSAKIFEYIGHE 729
E +S DE+++G L+ L+ RG + D ++D+
Sbjct: 437 QEGFISPA-DEEFYGPALAPVGDMLVAQKVLRRRGQKLFWTRPDRAVDA----------- 484
Query: 730 KMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNL 789
I +R++ +VID + V+ ++E V+ GAVY+HQG +LV E
Sbjct: 485 ------IDLRSMGGMGIDVIDHVTGRVVGVVDERAGDRTVHPGAVYLHQGDQWLVDEYLP 538
Query: 790 SSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACT---VTTT 846
AL + ++T+ + + + + ++++Q +AC +T
Sbjct: 539 DDHQALVHREVPGFWTQPQSASSVRI----------VAEEQRRAFGDGYVACGQVELTEQ 588
Query: 847 WFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQN-FSFRSGLHAASH 905
G+ R + ++D+ L +P+++ +QA W VP +V + + + H H
Sbjct: 589 VIGYLRRDEVTNDVWDSTALEMPEHTMVTQACWWVVPDAVTDRLGLDAVALAGAAHGTEH 648
Query: 906 ALLHVVPIYVRCNFSDLA 923
+ ++P + C+ D+
Sbjct: 649 TAIGILPAFAPCDRWDVG 666
>gi|383622153|ref|ZP_09948559.1| DEAD/DEAH box helicase domain protein [Halobiforma lacisalsi AJ5]
gi|448698664|ref|ZP_21699131.1| DEAD/DEAH box helicase domain protein [Halobiforma lacisalsi AJ5]
gi|445780772|gb|EMA31649.1| DEAD/DEAH box helicase domain protein [Halobiforma lacisalsi AJ5]
Length = 831
Score = 305 bits (780), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 235/770 (30%), Positives = 366/770 (47%), Gaps = 85/770 (11%)
Query: 217 QGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVA 276
+GQ+ I R A V PD +L T +A L+SHQAE++ A G+NV V+
Sbjct: 27 RGQIRERITIPTRSADHVP-PDDVLPATLAARLPV---DLWSHQAEALEALADGENVCVS 82
Query: 277 TMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVY 336
T TSSGK+ Y L + + AL ++PTKAL++DQ R L + + +GVY
Sbjct: 83 TSTSSGKTYVYGLEIARRALENPDVRALLVYPTKALSRDQRRELAELFDDLGLDLTVGVY 142
Query: 337 DGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIF 396
DGDT D+ +R+ A ++ITN L+ + +H +++ +N L
Sbjct: 143 DGDTDPGDKARIREEANVVITNVAGLNQYLEGHH-RWAGFHANCEL-------------- 187
Query: 397 LFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMEL 456
VV+DEAH++ G G H A ILRR R+ YG DP +V ++AT NP EH L
Sbjct: 188 -----VVVDEAHSWTGVSGMHAAWILRRARRVIDW-YGGDPQYVLTSATIGNPGEHAAAL 241
Query: 457 ANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSY 516
+I DGSP ++ V W P + DD + + ++ E
Sbjct: 242 TG-EPATVIDGDGSPRGRRHLVFWEP----------PERSGDDGEIPSKRPAT--VEAPE 288
Query: 517 LFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICV--YRAGYVAEDRRR 574
L+A HG+ + FC SRK EL + + +E S+ + Y AG+ RR
Sbjct: 289 LWAHCCYHGVPSLLFCDSRKATELAVDRATDFVENPTFPYAGSVALEPYNAGHGKRARRE 348
Query: 575 IERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAV 634
ER G L GVA T+ALE+GIDVG ID TL +G+PGS +S WQ+ GR+GR R +L+V
Sbjct: 349 TERRLKSGDLDGVATTSALEVGIDVGGIDGTLLMGYPGSRSSFWQRIGRAGRGTRDALSV 408
Query: 635 YVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFG 694
+V + LD Y ++PE L ++ E +D +NH V QHL CAA E P++ + + G
Sbjct: 409 FVPDQATLDGYVSRHPEYLLENDPEDAVVDLENHPVFLQHLRCAAQELPVTRDDADTFGG 468
Query: 695 SG-LSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEV-IDMQ 752
L + + G L S A Y ++ P IS+ A ++V + +
Sbjct: 469 RDRLERAVAYGRKTGDLEG-----SLAGGVTYARRDR-PQDDISLYATGGTTFDVRVAGE 522
Query: 753 SNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKEL--NLSSKIALCQKADLKYFTKTRDY 810
+ E I E++A+ +EGA +H+G Y V+EL + + D+ Y+T+++
Sbjct: 523 GSIDHEPIGEARAYRDYHEGATVLHRGDRYEVRELRADRPQPSVELEPVDVDYYTQSQRR 582
Query: 811 TDIHVSGGNNAYATKISKD---QLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDT-VEL 866
IH + + A + + + QL + TVT + + + +G + +T +E
Sbjct: 583 VAIHDTEVRESRAVEAAAENGFQLNRGYG-----TVTVRYPTYTKRDVETGEVLETGLET 637
Query: 867 YLPKYSYESQAVWIQVPQSV-KAVVEQNFSFRS---------------GLHAASHALLHV 910
+Q W +VP V +AV E + +R+ G+HA HA++ V
Sbjct: 638 GTLPVEMRTQLCWAEVPTGVERAVTETHSDYRNEECVDLPPRLHGYLGGIHAIEHAMIGV 697
Query: 911 VPIYVRCNFSDLAPECPN-----PHDSRYFPERILLYDRHPGGTGVSKQV 955
P+ + + +DL N P S +F +YD GG G S+++
Sbjct: 698 APLELTVDSNDLGGLATNRLPDAPDTSGWF-----IYDGVEGGLGFSRRI 742
>gi|448736481|ref|ZP_21718592.1| ATP-dependent helicase [Halococcus thailandensis JCM 13552]
gi|445806081|gb|EMA56252.1| ATP-dependent helicase [Halococcus thailandensis JCM 13552]
Length = 1020
Score = 304 bits (779), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 226/802 (28%), Positives = 364/802 (45%), Gaps = 89/802 (11%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLD-NTKSALKSTGISKLYSHQAES 263
E + LR QG++ H E I R+A L ++ +D + AL I LY HQA +
Sbjct: 3 ETITWLRNRSQHQGRIQHHERIPGREATLTDLD---IDYRIEMALARRDIDDLYYHQASA 59
Query: 264 IMASLAGKNVVVATMTSSGKSLCYNLPVLE-ALSHDLSSSALYMFPTKALAQDQLRALLA 322
I A +NVV+AT T+SGKSL Y +P E A+ H LY+ P +AL DQ L A
Sbjct: 60 IEAVHTDQNVVLATPTASGKSLAYTIPAFERAIDH--GGRTLYIAPQRALINDQEETLSA 117
Query: 323 MTKAFDASIDIGV--YDGDTTQKDRMWLRD-NARLLITNPDMLHMSILPYHGQFSRILSN 379
+ +GV Y G TQ ++ +RD ++ PD LH ++LP+ SR+
Sbjct: 118 LADDLGLGAQVGVEQYTGQLTQDEKRAVRDRQPHTVLVTPDTLHYALLPW---ASRLWE- 173
Query: 380 LRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSF 439
F + VVIDE H Y+G FG H +L+LRRL R+C + +DP
Sbjct: 174 --------------WFFRQLDTVVIDEVHEYRGIFGSHVSLVLRRLNRVCER-FDTDPDV 218
Query: 440 VFSTATSANPREHCMELANLST--LELIQNDGSPCAQKLFVLWNP----------TSCLR 487
+ +AT NP EH + T ++ D S ++ WNP TS
Sbjct: 219 ICCSATIGNPAEHAGTVTGRPTDSFTVVDEDTSATGPTNWLFWNPPRKSGSNNGQTSQPD 278
Query: 488 SVLNKS----QTDMDDTRNAANKTSSPISEVSY-----------------------LFAE 520
+N + Q+DM + ++ + PI+E + LF +
Sbjct: 279 ETINTAPGDVQSDMATATDDSSAKAEPIAESAVSGDSDDDMETGGERRSTHAETVGLFCD 338
Query: 521 MVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LVDSICVYRAGYVAEDRRRIERDF 579
+V G + + F RSR+ E + + L H L D+ Y+A + R IE
Sbjct: 339 LVMRGYQTLVFTRSRQGAERYADWCSDRLRARNEHDLADATTAYQAALKQDRREEIEEGL 398
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFE 639
G + GV +TNALELG+DVG +DV L G+PG+ S +Q+AGR+GR + SL V
Sbjct: 399 HDGSIRGVWSTNALELGVDVGGLDVVLLDGYPGTRMSTYQRAGRAGRGDEASLVTLVGGN 458
Query: 640 GPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSS 699
LDQY M P+ F E ++ N +++ +H VC+A D+++FG
Sbjct: 459 DQLDQYLMANPDSFFDGDPEHAVVNPANDQLMPEH-VCSAASEAWLKPDDDRHFGESFPE 517
Query: 700 GITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEE 759
++ L + G L D+ A I + + P H +S+R I+ ++D N +
Sbjct: 518 VVSELDDEGKLD---RRDTHAGIRWFYDGDDSPQHEMSLRTIDDREVRLVDRLQNTTIAR 574
Query: 760 IEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGN 819
+ + A + A+Y HQG TY V +L+L AL + ++ TR D ++
Sbjct: 575 LPFADALRDAHPEAIYHHQGTTYEVADLDLDRGQALLESTQTNHY--TRALRDKQITVER 632
Query: 820 NAYATKISKDQLTKTTAQALACTVTTTWFGFYRL----WRGSGIIFDTVELYLPKYSYES 875
+ ++ D + T + T+ + R G+ ++ D LP+ + ++
Sbjct: 633 DLEEFRL--DCYSAVTVRFAEVTLREQIESYLRFDGTEDEGTKVLLDDP---LPETTLQT 687
Query: 876 QAVWIQVPQSVK----AVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHD 931
+A++ +P +V+ A + F +HA HA++ + P+ + C+ D+ H
Sbjct: 688 RALYFTIPPAVEQRICAQSREEDGFAGAIHAVEHAMISLFPLELLCDRRDIGGLSTLLH- 746
Query: 932 SRYFPERILLYDRHPGGTGVSK 953
+ I +YD +PGG G+S+
Sbjct: 747 THTGQSTIFIYDGYPGGVGLSR 768
>gi|237755863|ref|ZP_04584459.1| YprA [Sulfurihydrogenibium yellowstonense SS-5]
gi|237691974|gb|EEP60986.1| YprA [Sulfurihydrogenibium yellowstonense SS-5]
Length = 803
Score = 304 bits (779), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 195/668 (29%), Positives = 322/668 (48%), Gaps = 121/668 (18%)
Query: 255 KLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQ 314
KLYSHQA++I L G +++V T T+SGKSL Y L +LE + + ++A+ +FP ALA+
Sbjct: 36 KLYSHQADAIEQILKGNDIIVTTPTASGKSLIYTLSILEKIDQNPDTTAVLIFPLVALAR 95
Query: 315 DQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNA-RLLITNPDMLHMSILPYHGQF 373
DQ + + K + Y GDT+ +R+ +R N LIT PDML+ ILP H +
Sbjct: 96 DQKEKIENLIKMTKIKATVETYYGDTSNTERVRIRSNPPNFLITTPDMLNQGILPNHWSW 155
Query: 374 SRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVY 433
+ +NL FVVIDE HAY+G G H A I RRL RL +
Sbjct: 156 DKFFTNLE-------------------FVVIDEIHAYRGVLGSHVANIFRRLNRLANFYT 196
Query: 434 GSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKS 493
G +P ++ ++AT NP +L I G+P +KL + P
Sbjct: 197 GKEPLYICNSATIRNPSLFAEKLTGKKNFIEISKSGAPSPKKLIYITEP----------- 245
Query: 494 QTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELV-LSYTREILEET 552
+P ++ L ++ G I F SRK E++ L+ +E+ +
Sbjct: 246 ---------------APNHQLIELIIGFLKTGTSTIVFMDSRKDIEVIYLNIKKELEKRN 290
Query: 553 APHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPG 612
HL++ + YR+GY E+RR IE+ G + V +T++LE+GID+G I + GFPG
Sbjct: 291 LFHLMNKVKPYRSGYRQEERREIEKGLANGDITVVLSTSSLEMGIDIGEIQCVVLKGFPG 350
Query: 613 SIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLE 672
++A++WQ+ GR+GRR + + + + LDQY++K PE +F +E I+ +N +L+
Sbjct: 351 TLAAMWQRFGRAGRRGQTAYNYLITKQDALDQYYLKNPEDIFNRNVEEPIINPENKYILK 410
Query: 673 QHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAK-IFE----YIG 727
+HL+ +A E P+ I D K PS + K + E YI
Sbjct: 411 KHLILSAKELPIH-IRDIK----------------------PSEKEAVKELLEEKILYID 447
Query: 728 HEKMPSH---TISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLV 784
+K+ S + SIR+ + Y ++D+++N + +E+ F++ + AVY+H G TY V
Sbjct: 448 KDKIKSRKKISFSIRS-AGDSYNIVDIKTNRSIGNLEQEYVFYEAFPNAVYIHSGETYKV 506
Query: 785 KELNLSSKIALCQKADLKYFT--------------KTRDYTDIHVSGGNNAYATKISKDQ 830
++ K+ +K DL YFT K+R + DI + G
Sbjct: 507 INVDNDDKVVYVEKVDLNYFTHPVLASETEIQSIEKSRKFKDIEIFYG------------ 554
Query: 831 LTKTTAQALACTVTTTWFGFYRLW-----RGSGIIFDTVELYLPKYSYESQAVWIQVPQS 885
+ V + G+ ++ R + ++FD ++ + ++ ++AVW +P
Sbjct: 555 ---------SVNVRSMVIGYSKIEIESNKRINDVMFDYKKIL--ERNFATKAVWFTIPDY 603
Query: 886 VKAVVEQN 893
K ++E+N
Sbjct: 604 YKGLIEKN 611
>gi|223997592|ref|XP_002288469.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220975577|gb|EED93905.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 1287
Score = 304 bits (778), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 247/851 (29%), Positives = 377/851 (44%), Gaps = 175/851 (20%)
Query: 255 KLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQ 314
+L+ HQ ++I A++ + VV T T SGK++C+ LPV+ S+++ +FPTKALAQ
Sbjct: 353 RLFQHQTQAIEAAMNDIHTVVCTGTGSGKTMCFLLPVIAKALASPGSASILLFPTKALAQ 412
Query: 315 DQLRALLAMTKAF--DASIDI-----GVYDGDTTQKDRMWLRDNARLLITNPDMLHMSIL 367
DQ + + ++ + S DI GV DGDT R + + ++++TNPD +H ++L
Sbjct: 413 DQYSKIKTLLQSLPNEPSTDIPPLHAGVIDGDTPHAQRDAIATDCQIILTNPDTIHAALL 472
Query: 368 PYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCR 427
P S + I VVIDEAH Y G FG H A++L RL R
Sbjct: 473 P-----------------SWKRPSYKQLLARIDTVVIDEAHVYDGTFGAHVAMVLSRLKR 515
Query: 428 LCSHVYGSD----------------PSFVFSTATSANPREHCMELANLSTLE---LIQND 468
+C S+ P F+ +AT +P + L + E +I+ D
Sbjct: 516 VCRVASSSNSIRTADNAGNSPRNAKPLFIACSATITHPEQQFRLLCPVKANEKVCVIEKD 575
Query: 469 GSPCAQKLFVLWNP-----------------------TSCLR--------SVLNKSQTDM 497
GSP + K + +WNP +CL SV++ +
Sbjct: 576 GSPSSPKHYFVWNPPILDLNGNCTGSVFLPKKIKSTDNNCLANNTANDNISVIHIPRNSS 635
Query: 498 DDTRNAA------------------NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCE 539
RN+A N+ E + LFA + RCIAFCR+R L E
Sbjct: 636 KRKRNSALELQEDESISIMQYNQQLNRRRHAADETALLFARAIVANTRCIAFCRTRSLVE 695
Query: 540 LVLSYTREILEET--APHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGI 597
V T L+ + HL I YR GY A+ RR IE F G L GV TNALELG+
Sbjct: 696 WVYERTITALKSCPESSHLASRIESYRGGYSAQARRSIEERLFKGDLIGVVGTNALELGV 755
Query: 598 DVGHIDVTLHLGFPGSIASLWQQAGRSGR-RERPSLAVYVAFEGPLDQYFMKYPEKLFKS 656
DVG ID+TLH G+PGS +SL QQ+GR+GR R PS +V + F P +Q+ + P L +
Sbjct: 756 DVGGIDLTLHCGYPGSKSSLLQQSGRAGRGRGVPSCSVTICFSSPSEQFLWRTPNSLLRR 815
Query: 657 PIECCHIDAQNHKVLEQHLVCAALEHPLSLIY------------------DEKYFGSGL- 697
++ N V++ HL+ A E PL + DE+ G
Sbjct: 816 GVDVPPSLPLNGSVVQGHLLAAGAEFPLCGVLSVTTLLNEHEESITDCPSDEELLGGQTV 875
Query: 698 -SSGITTLKNRGYLSSD------PSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVID 750
+ L +G L + + +FE K +S+R+IE Y ++D
Sbjct: 876 YQESVELLMQKGGLLTTKLVHAVSAAGEKCAVFETHPVVKDAWKRVSLRSIEPVNYSIVD 935
Query: 751 ----MQSN---------EVLEEIEESKAF-FQVYEGAVYMHQG----HTYLVKELNLSS- 791
MQ V++ I S+ + EG +++ H + V+ L L +
Sbjct: 936 LSHPMQGGMSDKIHSPAAVMDSIPYSRELSYDTVEGNSWLNPWRIPLHFWAVRSLALVAA 995
Query: 792 -------------KIALCQKADLKYFTKTRDYTDIHVSGGNN---------AYATKISKD 829
I L +K ++ + T+ + H++ N A A +
Sbjct: 996 KRWLPSPGPVQIYSIQLKRKPNIASCSATQALSTNHITVVNQMDHAELLVKALAAADCDE 1055
Query: 830 QLTKTTAQALA----CTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQS 885
+ TT+QA+A TV T GF +L + + LP Y++ A+WI S
Sbjct: 1056 KAIATTSQAVAGSGSVTVRRTVHGFKKLSHVNRKEISRTTIVLPPMEYDTHAIWIDADAS 1115
Query: 886 -VKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDR 944
+K VV F +G+HA SHAL+ V P++V C +DL +C + +R+ RILL+D
Sbjct: 1116 YLKDVVAD---FDAGVHALSHALVAVAPLFVPCTSADL--DCDH---ARFDCTRILLFDT 1167
Query: 945 HPGGTGVSKQV 955
GG+G+++Q+
Sbjct: 1168 RAGGSGIAEQL 1178
>gi|297572235|ref|YP_003698009.1| DEAD/DEAH box helicase [Arcanobacterium haemolyticum DSM 20595]
gi|296932582|gb|ADH93390.1| DEAD/DEAH box helicase domain protein [Arcanobacterium haemolyticum
DSM 20595]
Length = 778
Score = 304 bits (778), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 219/732 (29%), Positives = 336/732 (45%), Gaps = 95/732 (12%)
Query: 245 KSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSAL 304
+ L + G+ + HQ +I G ++VVAT T SGKS+ +P L L + S +L
Sbjct: 37 RQVLSARGMKHPWIHQQRAIEELDRGNHIVVATGTGSGKSMAAWVPALSTLGNFSQSRSL 96
Query: 305 ----------YMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARL 354
Y+ PTKALA DQ +L ++ D +I I DGD+ + R + RD+A +
Sbjct: 97 ATRQRRPTTIYLSPTKALAADQFTSLRSLAYDVDPAIAITTADGDSDKVARDFARDHADI 156
Query: 355 LITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAF 414
+++NPD LH S+L H ++R+ LR F+VIDE H Y+G F
Sbjct: 157 VLSNPDFLHFSMLSRHENWARLWRGLR-------------------FIVIDEFHHYRGNF 197
Query: 415 GCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELAN--LSTLELIQNDGSPC 472
G H A+ILRR RL +H YG+ P +F +ATS +PR + I +DGSP
Sbjct: 198 GAHVAIILRRTLRLAAH-YGAHPQVIFLSATSGDPRSAAQRFLGEAFGQVVAIDDDGSPA 256
Query: 473 AQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFC 532
R + S D +AN ++ ++ A ++ G R + F
Sbjct: 257 GA------------RDIYTLSSGD------SANLQAADVT------AALITEGKRLLTFV 292
Query: 533 RSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNA 592
RSR E V RE L +T P LV ++ YR GY+ EDRR +E D G+L +A T+A
Sbjct: 293 RSRPGTERVAELVRERLRDTHPDLVSAVAAYRGGYLPEDRRELEADVRSGRLRALATTSA 352
Query: 593 LELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEK 652
LELGID+ +D + G+PG+ AS QQ GR+GR LAV+VA + PLD Y + +P
Sbjct: 353 LELGIDIDELDAAVVTGWPGTYASFQQQIGRAGRAGTTGLAVFVARDNPLDNYIINHPSL 412
Query: 653 LFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSL-------IYDEKYFGSGLSSGITTLK 705
L P E D N +L HL AA E PL+ + F + S + +
Sbjct: 413 LASPPPESPTFDPSNPWILPSHLAAAAHELPLTRADLPIFSLTSTDMFDQMVESDLLRKR 472
Query: 706 NRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKA 765
G+ + + + + + HTISI I+ V+ ++ ++A
Sbjct: 473 PDGWFWNTTTRIEPHGLLDL----RDAGHTISI----------INSLDGSVIGTVDYARA 518
Query: 766 FFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKA---DLKYFTKTRDYTDIHVSGGNNAY 822
V+ GA+Y+HQG + ++EL + +AL A D++ F +T D+ VS A+
Sbjct: 519 DSTVFPGAIYLHQGQPFEIEELG--TDVALAHPAPDTDIRTFARTETSVDV-VS---TAH 572
Query: 823 ATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGS-GIIFDTVELYLPKYSYESQAVWIQ 881
+ Q + V Y + R S G+ V L +P + + W+
Sbjct: 573 TINLPDGQWCTGMVNVRSQVVG------YDVRRVSDGVYLGNVPLTMPLREFITAGTWLT 626
Query: 882 VPQS-VKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERIL 940
+ +S + LHAA H ++ ++P+ C+ DL H P I+
Sbjct: 627 LKESTTREAGIDTADLPGALHAAEHTMIALLPLLATCDRWDLGGLSTMVHPDTGRPT-II 685
Query: 941 LYDRHPGGTGVS 952
++D GG+G S
Sbjct: 686 VHDAFAGGSGAS 697
>gi|336323404|ref|YP_004603371.1| hypothetical protein Flexsi_1147 [Flexistipes sinusarabici DSM
4947]
gi|336106985|gb|AEI14803.1| Protein of unknown function DUF1998 [Flexistipes sinusarabici DSM
4947]
Length = 960
Score = 303 bits (777), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 217/738 (29%), Positives = 362/738 (49%), Gaps = 93/738 (12%)
Query: 237 PDALLDNTK--------SALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYN 288
P AL+D + SAL+ GI LYSHQA++ A +G++ ++ T +SGK+LCYN
Sbjct: 28 PPALVDYKENVESLLLHSALEKFGIKSLYSHQADAYQAIKSGRDTLITTPAASGKTLCYN 87
Query: 289 LPVLEALSHDLSSSALYMFPTKALAQDQLRAL--LAMTKAFDASIDIGVYDGDT-TQKDR 345
LP++E + ++ S ALY+FP KAL DQ +A LA + + DGDT Q R
Sbjct: 88 LPIMEDMINNPSVKALYLFPIKALGYDQKKAFETLAEQIPLGEKLTAEIVDGDTGKQNRR 147
Query: 346 MWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVID 405
L+ ++I+N D++H S+LP ++ L NL+ +VVID
Sbjct: 148 KILKTPPNVIISNLDIIHYSMLPGISEWRNFLDNLK-------------------YVVID 188
Query: 406 EAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELI 465
E H YKG FG +L+R RL +V FV ++AT NP + +E I
Sbjct: 189 EIHTYKGIFGTQAYNLLQRFLRLVPNV-----QFVCASATIGNPVD-LVENFTGRKFYHI 242
Query: 466 QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHG 525
+G+ +K +++NP D+ ++ A YL + G
Sbjct: 243 NKNGAERGKKNVLIFNP-------------DIPESALA-----------QYLLKINLDSG 278
Query: 526 LRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLC 585
++ I F +SRK E + Y + L P + + YRAG++ E+RR+IE+ F L
Sbjct: 279 VKTICFTKSRKQTEKI--YAK--LVAGDPSRKNVVSSYRAGFLPEERRKIEQAFHKDTLK 334
Query: 586 GVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQY 645
V AT+A+E+GIDVG +D T+ +G+PGS+ SLWQ+AGRSGR + SL + + LDQY
Sbjct: 335 AVVATSAIEMGIDVGGVDSTILVGYPGSLMSLWQRAGRSGRSSKDSLICLITSKDALDQY 394
Query: 646 FMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLK 705
+ K PE+LF E ID +N + +H++CAA E P+ +E+Y+ + + I L
Sbjct: 395 YAKNPEELFTDKYEVVTIDRENTNINSKHILCAANEKPVG--KNERYYDI-MKNDIEKLA 451
Query: 706 NRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKA 765
+ G L +D +Y+ E+ P + R + + Y ++ + V+ +
Sbjct: 452 SEGRLFTDKDG------LKYVSLERYPHKNVDFR-MAGDTYTLV--CNGIVIGTNSGRRL 502
Query: 766 FFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATK 825
+ + +E AVY+H+G ++VK ++ + K Y+T + ++ + +
Sbjct: 503 YTEHFENAVYLHRGDYFIVKRVDHNKKEIYLDPFRGNYYTMPK------INKETMILSKE 556
Query: 826 ISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQS 885
+ D A V+ G+ ++ +G T++L +E++ ++ V +
Sbjct: 557 MDSDD-KNIHAGFCNLQVSEQLTGYDKISGKTGEKLQTIDLEKEPVQFETKGFYLIVTEK 615
Query: 886 VKAVVEQ-NFSFRSGLHAASHALLHVVPIYVRCNFSDLA----PECPNPHDSRYFPERIL 940
+ VE+ NF+F +HA H+L+ + P +V C+ SD+A P P S F
Sbjct: 616 AREKVEENNFNFMGSIHALEHSLIAMAPSFVLCDRSDIAGISYPLHPQLESSAVF----- 670
Query: 941 LYDRHPGGTGVSKQVTDM 958
+YD + GG G+ +V ++
Sbjct: 671 IYDSYAGGAGICSRVFEI 688
>gi|224115908|ref|XP_002332042.1| predicted protein [Populus trichocarpa]
gi|222875339|gb|EEF12470.1| predicted protein [Populus trichocarpa]
Length = 226
Score = 302 bits (774), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 155/260 (59%), Positives = 180/260 (69%), Gaps = 53/260 (20%)
Query: 560 ICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQ 619
+C + +DRR+IERDFF GKL G+AATNALELGIDVGHID TLHLGFPGS ASLWQ
Sbjct: 1 MCFDVGWALEQDRRQIERDFFSGKLSGIAATNALELGIDVGHIDATLHLGFPGSFASLWQ 60
Query: 620 QAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAA 679
QAGRSGRRERPSLAVYVAF+GPLDQYFMK+P+ L VL+QHLVCAA
Sbjct: 61 QAGRSGRRERPSLAVYVAFQGPLDQYFMKFPKTL--------------SMVLKQHLVCAA 106
Query: 680 LEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIR 739
LEHPLSL++DEKYFGS LS+ + +LKN+G LS DPS DSSA+I+ YIGHE
Sbjct: 107 LEHPLSLLHDEKYFGSSLSNALMSLKNKGDLSFDPSRDSSARIWSYIGHE---------- 156
Query: 740 AIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKA 799
+YEGAVYMHQG TY+VKEL++S KIALC +A
Sbjct: 157 -----------------------------IYEGAVYMHQGKTYVVKELDISEKIALCYEA 187
Query: 800 DLKYFTKTRDYTDIHVSGGN 819
+L Y+TKTRDYTDI V GG+
Sbjct: 188 NLHYYTKTRDYTDIDVLGGD 207
>gi|403737450|ref|ZP_10950246.1| putative ATP-dependent helicase [Austwickia chelonae NBRC 105200]
gi|403192398|dbj|GAB77016.1| putative ATP-dependent helicase [Austwickia chelonae NBRC 105200]
Length = 605
Score = 302 bits (774), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 207/608 (34%), Positives = 308/608 (50%), Gaps = 56/608 (9%)
Query: 216 SQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVV 275
+ G + HV A + P AL GI+ L+ HQ E+ G++VV
Sbjct: 22 APGCLRHVHHRPAHHGDHIAPPHWADAALVDALAHQGITTLWRHQHETADLLHHGRHVVT 81
Query: 276 ATMTSSGKSLCYNLPVLEALSHDL------SSSALYMFPTKALAQDQLRALLAMTKAFDA 329
AT TSSGKSL Y LP L A++ + ++ALY+ PTKAL DQ + A+
Sbjct: 82 ATGTSSGKSLGYLLPALTAITQGVRTLDRRGATALYLAPTKALTADQQTRIDALDLP--- 138
Query: 330 SIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVT 389
I YDGDT ++R LR + L+TNPDMLH ++LP H +++ L L
Sbjct: 139 GIRAATYDGDTPTEERRHLRAHTNYLLTNPDMLHHTLLPRHEEWAPFLRALN-------- 190
Query: 390 TEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANP 449
+V+IDE H Y+G FG HTA +LRRL RLC+ YG+ P+F S+AT A+P
Sbjct: 191 -----------YVIIDECHVYRGIFGTHTAAVLRRLRRLCA-RYGAAPTFALSSATVADP 238
Query: 450 REHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSS 509
L L + ++D +P + + W P + +D T + S
Sbjct: 239 AAQASTLTGLPVTAVTRDD-TPRGSRHILFWEP---------PTTPGVDGT----PRRRS 284
Query: 510 PISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEET-APHL-VDSICVYRAGY 567
++E + L V+ G +AF RSR E++ + R +L T PH +I YR GY
Sbjct: 285 TLTESARLLTAAVRTGKHTVAFTRSRAAAEILAAQARHLLTLTDGPHADTRTIAAYRGGY 344
Query: 568 VAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRR 627
+ EDRR +E G + G+A T ALELGID+ +D + G+PG+ AS WQQ GR+GR
Sbjct: 345 LPEDRRTLEHGLRHGTIRGLATTTALELGIDISGLDTVIVAGWPGTRASWWQQIGRAGRD 404
Query: 628 ERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLI 687
P+L ++VA + PLD Y + +P+ + P+E +D N VL +HL+ AA E PL+
Sbjct: 405 GTPALGIFVADDDPLDTYLLHHPDAVLGEPVEAAVLDPDNPHVLSRHLLAAAAETPLT-P 463
Query: 688 YDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYE 747
D YFG L + L G L P + + GH + P+ S+R ++
Sbjct: 464 DDSHYFGPALHPLVDALTEHGSLRRRP------HGWCWTGHGR-PTDHFSLRGT-TQVVH 515
Query: 748 VIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTK- 806
+ + + V+ ++ ++A V+ GAV++HQG T++V +L+L S AL D + T+
Sbjct: 516 ITERDTGRVIGTVDAARADATVHTGAVHLHQGETFVVTDLDLDSGSALVVPGDPGWTTQA 575
Query: 807 -TRDYTDI 813
TR DI
Sbjct: 576 HTRSTFDI 583
>gi|188997348|ref|YP_001931599.1| DEAD/DEAH box helicase domain-containing protein
[Sulfurihydrogenibium sp. YO3AOP1]
gi|188932415|gb|ACD67045.1| DEAD/DEAH box helicase domain protein [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 803
Score = 302 bits (773), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 188/668 (28%), Positives = 322/668 (48%), Gaps = 121/668 (18%)
Query: 255 KLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQ 314
KLYSHQAE++ L G +++V T T+SGKSL Y L +LE + + ++A+ +FP ALA+
Sbjct: 36 KLYSHQAEALEQILKGNDIIVTTPTASGKSLIYTLSILEKIDQNPDTTAILIFPLVALAR 95
Query: 315 DQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNA-RLLITNPDMLHMSILPYHGQF 373
DQ + + K + Y GDT+ +R +R N LIT PDML+ ILP H +
Sbjct: 96 DQKEKIENLIKMTKIKATVETYYGDTSNTERARIRSNPPNFLITTPDMLNQGILPNHWSW 155
Query: 374 SRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVY 433
+ +NL FVV+DE HAY+G G H A I RRL RL +
Sbjct: 156 DKFFTNLE-------------------FVVVDEIHAYRGVLGSHVANIFRRLNRLANFYT 196
Query: 434 GSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKS 493
G +P ++ ++AT NP +L I G+P +KL + P S + +
Sbjct: 197 GKEPLYICNSATIRNPSLFAEKLTGKKNFIEISKSGAPSPKKLIYIAEPASNYQLI---- 252
Query: 494 QTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELV-LSYTREILEET 552
+ E ++ G I F SRK E++ L+ +E+++
Sbjct: 253 ----------------------EIIIEFLKTGTSTIVFIDSRKDIEVIYLNIRKELIKRK 290
Query: 553 APHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPG 612
L++ + YR+GY E+RR IE+ G + V +T+ALE+GID+G I + GFPG
Sbjct: 291 LFQLINKVKPYRSGYRQEERREIEKGLANGDITVVLSTSALEMGIDIGEIQCVVLKGFPG 350
Query: 613 SIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLE 672
++A++WQ+ GR+GRR + + + + LDQY++K PE +F +E I+ +N +L+
Sbjct: 351 TLAAMWQRFGRAGRRGQTAYNYLITKQDALDQYYLKNPEDIFNRNVEEPIINPENKYILK 410
Query: 673 QHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAK-IFE----YIG 727
+HL+ +A E P+ + +PS + K + E YI
Sbjct: 411 KHLILSAKELPIHI-----------------------RDIEPSEKEAVKELLEDKILYID 447
Query: 728 HEKMPSH---TISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLV 784
+K+ S + SIR+ + Y+++D+++N + + + F++ + AVY+H G TY V
Sbjct: 448 KDKIKSRKKISFSIRS-AGDSYDIVDIKTNRSIGNLNQEYVFYEAFPNAVYIHSGETYKV 506
Query: 785 KELNLSSKIALCQKADLKYFT--------------KTRDYTDIHVSGGNNAYATKISKDQ 830
++ K+ ++ADL YFT K+R + DI + G
Sbjct: 507 VSVDNDDKVVYVEEADLNYFTQPVLSSETEIQSIEKSRKFKDIEIFYG------------ 554
Query: 831 LTKTTAQALACTVTTTWFGFYRLW-----RGSGIIFDTVELYLPKYSYESQAVWIQVPQS 885
+ V + G+ ++ R + ++FD ++ + ++ ++AVW +P
Sbjct: 555 ---------SVNVRSMIIGYSKIEIESNKRINNVMFDDEKIL--ERNFATKAVWFTIPDY 603
Query: 886 VKAVVEQN 893
++++++N
Sbjct: 604 YESLIKKN 611
>gi|308804603|ref|XP_003079614.1| ATP-dependent RNA helicase (ISS) [Ostreococcus tauri]
gi|116058069|emb|CAL54272.1| ATP-dependent RNA helicase (ISS) [Ostreococcus tauri]
Length = 934
Score = 301 bits (772), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 225/791 (28%), Positives = 372/791 (47%), Gaps = 122/791 (15%)
Query: 241 LDNTKSA-LKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDL 299
+D T A L G++KLYSHQ+ +I A+ AG++VVV+T T+SGKS+CY +P+ EAL +
Sbjct: 136 MDPTLGAVLARCGVTKLYSHQSAAIKAARAGRSVVVSTPTASGKSMCYVIPIFEALMDEK 195
Query: 300 S--SSALYMFPTKALAQDQLRALLAMTKAFD---------------------------AS 330
S S AL MFP KALA DQ++ + + + AS
Sbjct: 196 SKQSKALLMFPLKALANDQMKKMRHIVEQAQKLKTEIDEMKISAEHYAGIDVNRLQRLAS 255
Query: 331 IDIGVYDGDTTQKDRMWLRDNA-RLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVT 389
+ + V DGDT + + ++ + ++++TNPD LH ++LP H + +
Sbjct: 256 VKLAVCDGDTDVEVKAEIKKHGTQIILTNPDSLHHAMLPAHRSWGKKF------------ 303
Query: 390 TEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLC-SHVYGSDPSFVFSTATSAN 448
+ ++++V+DEAH + G G H A +LRRL R+C S P F+ ++AT +N
Sbjct: 304 ------WGCLKYIVLDEAHTHTGVSGSHVANVLRRLLRVCASWNTAVRPEFICTSATISN 357
Query: 449 PREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTS 508
P H L + + + N G+P +K F+LW P +D +
Sbjct: 358 PVAHVRRLTTRTPV-CVDNSGAPSGEKAFLLWQPPK------------VDAVGGPERR-- 402
Query: 509 SPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAP----HLVDSICVYR 564
SP +E + + A +VQ +RC+ F SR E + + +L + + L + YR
Sbjct: 403 SPYAEAADIVANLVQRNIRCLVFVSSRTSAETLARDAKRVLGKLSGGMGMELAKRVDCYR 462
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
AGY +RR +E G + + T+ALE+GIDVG +D T+H+G P + +++WQQAGR+
Sbjct: 463 AGYQQAERRELESRLQRGAINALVCTSALEMGIDVGSLDATVHVGVPETASAMWQQAGRA 522
Query: 625 GRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
GRR+ S+AV +A E PLD Y+ P +LF E +D N +LE HL CAA E L
Sbjct: 523 GRRQGASVAVVIANEKPLDHYYCTRPNELFARQSEEALVDPYNSAILELHLPCAAKEVAL 582
Query: 685 SLIYDEKYF-------------GSGLSSG------ITTLKNRGYLSSDPS--LDSSAKIF 723
L ++ G+ LS+ I + G SS + + + K
Sbjct: 583 DLRGNDAVLFTASQDDSPMRSDGARLSANFKAPLHIAIKRALGTASSTRTCLFNKATKTI 642
Query: 724 EYIGHEKMPSHTISIRAIE-SERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTY 782
E + P ++ +R ++ E +++ID + +++EE+ +A ++Y G V++ + +
Sbjct: 643 ECL-PTTYPHRSVMLRGVQGGEPWKLIDT-AGKLIEEVAGYRAMARLYAGCVFIARRGQF 700
Query: 783 LVKELNLSSKIALCQKADLKYFTKTRDYTDI-HVSGGNNAYATKISKDQLTKTTAQALAC 841
L+ L ++A + T TR+ TD+ + + I K ++T
Sbjct: 701 LIHRLEHEKRVAHASSYEKLETTATRERTDVTAMEPDPDQGVPDILKKRVTDVRVCLGDV 760
Query: 842 TVTTTWFGFY------------RLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSV--K 887
V+ T GF LWR + + Y ++AVW +P+ +
Sbjct: 761 HVSETVLGFVVNDHRTAKTIREELWRTPVVPAE----------YRTRAVWFDLPEECVRR 810
Query: 888 AVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHD-SRYFPERILLYDRHP 946
VE S R ++ +V C+ +D+A P+ S R+ LYD P
Sbjct: 811 VAVE---SLREATIGVANMCGGLVSSIAMCDSNDVAASTYLPNALSGNASARVFLYDTTP 867
Query: 947 GGTGVSKQVTD 957
GG G+++ + D
Sbjct: 868 GGIGLAETIFD 878
>gi|269217510|ref|ZP_06161364.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Actinomyces sp.
oral taxon 848 str. F0332]
gi|269212445|gb|EEZ78785.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Actinomyces sp.
oral taxon 848 str. F0332]
Length = 831
Score = 301 bits (770), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 230/799 (28%), Positives = 350/799 (43%), Gaps = 110/799 (13%)
Query: 216 SQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVV 275
+ GQ+ V ++ AR + P+ + K AL + GI +L+SHQAE+ G + VV
Sbjct: 17 TPGQVAAVVEMPARASAGAPWPEWVAPEVKDALANRGIRELWSHQAEAAELLHGGTHTVV 76
Query: 276 ATMTSSGKSLCYNLPVLEALSHD-----------LSSSALYMFPTKALAQDQLRALLAMT 324
AT T SGKSL +P L+ LS S LY+ PTKALA DQL L +
Sbjct: 77 ATGTGSGKSLAAWIPALDLLSRRGRGRSGLANIRYRPSVLYLAPTKALAADQLVGLARLA 136
Query: 325 KAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384
+ D I + DGD + W R+ A ++++NPD L ++L H +++R+ L +
Sbjct: 137 REVDPRIGVAAADGDAEASVKRWAREYADVVLSNPDFLQHAMLASHERWARLWRGLAM-- 194
Query: 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444
VV+DE H+Y+G FG + A +RRL RL H YG+ P+ F +A
Sbjct: 195 -----------------VVMDEFHSYRGVFGANVAATVRRLLRLAGH-YGACPAVAFLSA 236
Query: 445 TSANPREHCMELAN--LSTLELIQNDGSPCAQKLFVLWN--------------------- 481
TS +P E ++ ++ DGSP K VLW
Sbjct: 237 TSGDPAETARRFLGDSFGPVQAVERDGSPRGPKRLVLWRCREVEGEQRAKREGVPRAEGT 296
Query: 482 --------PTSCLRSVLNKSQTDMD-------------DTRNAANKTSSPISEVSYLFAE 520
T V N++ T+ + R AAN +E L
Sbjct: 297 GLKPRSDAGTGRHAGVQNRTGTEGNPKTGHDAGADLPGGPRRAAN------TEAGELTGV 350
Query: 521 MVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFF 580
+ G + + F RSR E V R+ A I YR GY+ EDRR +E
Sbjct: 351 LAAAGAQTLTFVRSRAGAERVAEIARDWSAANASGFDPEIAAYRGGYLPEDRRALEGSLR 410
Query: 581 GGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEG 640
G+L +A TNALELGIDV +D + G+PG+ AS QQ GR+GR +P +AV++ +
Sbjct: 411 SGQLRALATTNALELGIDVSGLDAVVVTGWPGTHASFAQQIGRAGRAGKPGVAVFIGRDD 470
Query: 641 PLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSG 700
PLDQY + +PE +SP E D N VL H+ AA E PL+ D + FG ++
Sbjct: 471 PLDQYLLSHPEVFTQSPAETNVFDPANPHVLLPHVCAAAAELPLTEA-DAEVFGLDSTAL 529
Query: 701 ITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEI 760
L + G L P+ F +S+R E ++D +S +L +
Sbjct: 530 FDDLASDGLLRRRPN-----GWFWNASLGANAHDMVSLRG-EGGTVSIVDGESGVLLGTV 583
Query: 761 EESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNN 820
+ ++A V+ GAVY+HQG Y+V+ L+ S + + + D + T T + +
Sbjct: 584 DSARADATVFPGAVYLHQGVPYMVESLDEDSAV-VHRHRDEEIRTYAAQSTSVRI----- 637
Query: 821 AYATKISKDQLTKTTAQALA---CTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQA 877
+ ++L A VT+ G+ G+ V L +P +
Sbjct: 638 -----VDVEELAHADFGVWARGEVLVTSQVTGYDVRRSEDGLYLGRVPLDMPVRELRTSG 692
Query: 878 VWIQVPQSVKAVVEQNF---SFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPH-DSR 933
W + KA+ LHAA H + ++P+ C+ DL H D++
Sbjct: 693 TWWTL--DAKALERAGVPASDLPGALHAAEHTSIGILPLLATCDRWDLGGLSTVWHADTQ 750
Query: 934 YFPERILLYDRHPGGTGVS 952
++++D PGG+G S
Sbjct: 751 A--ATVIVHDAVPGGSGCS 767
>gi|448667995|ref|ZP_21686238.1| ATP-dependent helicase [Haloarcula amylolytica JCM 13557]
gi|445768653|gb|EMA19732.1| ATP-dependent helicase [Haloarcula amylolytica JCM 13557]
Length = 822
Score = 300 bits (769), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 221/797 (27%), Positives = 361/797 (45%), Gaps = 106/797 (13%)
Query: 217 QGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVA 276
+GQ+V I + A + + D S L GI+ LY+HQ ++I A +G NVV+A
Sbjct: 15 EGQIVDQRTIPGQDAKTADC--EVTDRLASVLDDQGITDLYAHQVDAIEAVRSGDNVVLA 72
Query: 277 TMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL--LAMTKAFDASIDIG 334
T T+SGKSL Y +P E + D ++ LY+ P AL DQ L LA F + + +
Sbjct: 73 TETASGKSLAYTVPAFE-RALDRRATTLYIAPQVALINDQTETLSELAQGLGFASGVSVA 131
Query: 335 VYDGDTTQKDRMWLRD-NARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVY 393
Y G ++ ++ +R+ +L+T PDMLH ILP+ RL +
Sbjct: 132 QYTGRQSKSEKEAIRERQPTVLLTTPDMLHYGILPH---------AHRLWDW-------- 174
Query: 394 LIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHV-YGSD---------------- 436
F + VVIDE H Y+G FG H +L++RRL R+ G D
Sbjct: 175 -FFQRLETVVIDEVHGYRGVFGSHVSLVMRRLQRVAERFDAGGDSSESNGSRGDSATAGG 233
Query: 437 PSFVFSTATSANPREHCMELANL--STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQ 494
P +V +AT NP EH + + L+ D S + ++LWNP
Sbjct: 234 PEWVCCSATIGNPVEHAAAVTGQPEQSFALVDEDASASGPRHWLLWNPPEY--------- 284
Query: 495 TDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAP 554
D + + S+ + E LF ++V+ GL+ + F SR+ E S + + L
Sbjct: 285 --EGDGWGSGRRKSNHV-ETKQLFVDLVERGLQTVVFAGSRQTAERYASDSADELRSRGE 341
Query: 555 H-LVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGS 613
H L DS+ Y+A + RR +E+ G L GV +T+ALELG+DVG +D L G+PG+
Sbjct: 342 HALADSVGAYQAALTDDRRRELEQGLQSGDLRGVWSTSALELGVDVGGLDAVLLDGYPGT 401
Query: 614 IASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQ 673
+QQAGR+GR P+L V E LDQY ++ P+ LF++ E + +N ++L
Sbjct: 402 RMRAFQQAGRAGRGTDPALVALVGGEDQLDQYVLRNPDALFETGAEQAVTNPENEQLLPD 461
Query: 674 HLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPS 733
H+ AA E+ LS D++YFG + L++ G L + + ++G+ P
Sbjct: 462 HVHAAACENWLSPT-DDRYFGETFPDVVADLESAGKLDR----RQTDQGMRWLGN-GSPH 515
Query: 734 HTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKI 793
H +++R ++ +++ + +V+ ++ A + GA+Y HQG Y V +L+L + +
Sbjct: 516 HDMNLRTVDDGEVKLV--ANGDVIAKLSVEDALRDAHPGAIYHHQGRRYEVTDLDLDAGV 573
Query: 794 ALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRL 853
A + YFT+ I V +D + + + +T G+ R
Sbjct: 574 AELDRTWADYFTRVLHDKTITVEADLAERRLPTREDVPVRFASVTMRKQIT----GYERR 629
Query: 854 WRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNF------------------- 894
SG + L LP+ + E++A++ VP +++ + Q
Sbjct: 630 DGSSGEVLGQRSLDLPETTLETKALYHTVPSDLESEIRQGAYGAESDSGGESESGNDGGG 689
Query: 895 ------------------SFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFP 936
F +HAA HA++ + P C+ D+ H P
Sbjct: 690 SSGGQPGNAAPDGGGEPGDFPGAIHAAEHAMISMFPFEYLCDRGDIGGLSTPRHPHTGEP 749
Query: 937 ERILLYDRHPGGTGVSK 953
I +YD +PGG G+++
Sbjct: 750 T-IFIYDGYPGGIGLTR 765
>gi|448634517|ref|ZP_21674915.1| ATP-dependent helicase [Haloarcula vallismortis ATCC 29715]
gi|445749490|gb|EMA00935.1| ATP-dependent helicase [Haloarcula vallismortis ATCC 29715]
Length = 810
Score = 300 bits (767), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 217/786 (27%), Positives = 361/786 (45%), Gaps = 96/786 (12%)
Query: 217 QGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVA 276
+GQ+V + R A + + D L+ GI+ LY+HQ ++I A G NVV+A
Sbjct: 15 EGQIVDQRTVPGRDAQTADC--DVTDRLAGVLEDRGITDLYAHQVDAIEAVRDGDNVVLA 72
Query: 277 TMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL--LAMTKAFDASIDIG 334
T T+SGKSL Y +P E + D ++ LY+ P AL DQ L LA F + + +
Sbjct: 73 TETASGKSLAYTVPAFE-RALDRRATTLYVAPQVALINDQTETLSELAQGLGFASGVSVA 131
Query: 335 VYDGDTTQKDRMWLRD-NARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVY 393
Y G ++ ++ +R+ +L+T PDMLH ILP+ RL +
Sbjct: 132 QYTGRQSKSEKEAIRERQPTVLLTTPDMLHYGILPH---------AHRLWDW-------- 174
Query: 394 LIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSH------------VYGSDPSFVF 441
F + VVIDE H Y+G FG H ++++RRL R+ P ++
Sbjct: 175 -FFQRLETVVIDEVHGYRGVFGSHVSMVMRRLQRVAERFDAGSNSSGSDGGTAGGPEWLC 233
Query: 442 STATSANPREHCMELANL--STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDD 499
+AT NP EH + ++ L+ D S + ++LWNP D
Sbjct: 234 CSATIGNPIEHAAAVTGQPGASFALVDEDASASGPRHWLLWNPPEY-----------EGD 282
Query: 500 TRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LVD 558
+ + S+ + E LF ++V+ GL+ + F SR+ E S + + L H L D
Sbjct: 283 GWGSGRRKSNHV-ETKQLFVDLVERGLQTVVFAGSRQTAERYASDSADELRSRGEHDLAD 341
Query: 559 SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLW 618
SI Y+A E RR +E+ G L GV +T+ALELG+DVG +D L G+PG+ +
Sbjct: 342 SIGAYQAALTDERRRELEQGLQSGDLRGVWSTSALELGVDVGGLDAVLLDGYPGTRMRAF 401
Query: 619 QQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCA 678
QQAGR+GR P+L V E LDQY ++ P+ LF++ E + +N ++L H+ A
Sbjct: 402 QQAGRAGRGTDPALVTLVGGEDQLDQYVLRNPDALFETGAEQAVTNPENEQLLPDHVHAA 461
Query: 679 ALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISI 738
A E+ LS D+++FG + L++ G L + + ++G+ P H +++
Sbjct: 462 ACENWLS-PEDDRHFGETFPDVVADLESAGKLDR----RQTDQGMRWLGN-GSPHHAMNL 515
Query: 739 RAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQK 798
R ++ +++ +V+ ++ A + GA+Y HQG Y V +L+L + +A +
Sbjct: 516 RTVDDGEVKLV--AKGDVIAKLSVEDALRDAHPGAIYHHQGRRYEVTDLDLDTGVAQLDR 573
Query: 799 ADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSG 858
YFT+ I + +D + + + +T G+ R SG
Sbjct: 574 TWADYFTRVLHDKTITIEADLAERRLPAREDVPVRFASVTMRKQIT----GYERRDGSSG 629
Query: 859 IIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSG------------------- 899
+ L LP+ + E++A++ VP ++ + Q ++R+G
Sbjct: 630 EVLGQRSLDLPETTLETKALYHTVPSDLEDEIRQG-AYRAGSGPGRERGSDGGGQPGDTA 688
Query: 900 ------------LHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPG 947
+HAA HA++ + P C+ D+ H P I +YD +PG
Sbjct: 689 TDGGGSGDFPGAIHAAEHAMISMFPFEYLCDRGDIGGLSTPRHPHTGEPT-IFIYDGYPG 747
Query: 948 GTGVSK 953
G G+++
Sbjct: 748 GIGLTR 753
>gi|448641063|ref|ZP_21677850.1| ATP-dependent helicase [Haloarcula sinaiiensis ATCC 33800]
gi|445761588|gb|EMA12836.1| ATP-dependent helicase [Haloarcula sinaiiensis ATCC 33800]
Length = 811
Score = 300 bits (767), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 217/786 (27%), Positives = 361/786 (45%), Gaps = 95/786 (12%)
Query: 217 QGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVA 276
+GQ+V + R A + + D L+ GI+ LY+HQ ++I A +G N V+A
Sbjct: 15 EGQIVDQRTVPGRDARTTDC--EIADRLAGVLEDRGITNLYTHQVDAIEAVRSGDNAVLA 72
Query: 277 TMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL--LAMTKAFDASIDIG 334
T T+SGKSL Y +P E + D ++ LY+ P AL DQ L LA F + + +
Sbjct: 73 TETASGKSLAYTVPAFER-ALDRRATTLYIAPQVALINDQTETLSELAQGLGFASGVSVA 131
Query: 335 VYDGDTTQKDRMWLRD-NARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVY 393
Y G ++ ++ +R+ +L+T PDMLH ILP+ RL +
Sbjct: 132 QYTGRQSKSEKEAIRERQPTVLLTTPDMLHYGILPH---------AHRLWDW-------- 174
Query: 394 LIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHV-YGSD---------------- 436
F + VV+DE H Y+G FG H +L++RRL R+ G D
Sbjct: 175 -FFQRLETVVVDEVHGYRGVFGSHVSLVMRRLQRIAERFDAGGDSSESNGRRGDNATAGG 233
Query: 437 PSFVFSTATSANPREHCMELANLS--TLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQ 494
P +V +AT NP EH + + L+ D S + ++LWNP
Sbjct: 234 PEWVCCSATIGNPVEHAAAVTGQPEPSFALVDEDASASGPRHWLLWNPP----------- 282
Query: 495 TDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAP 554
+ D + + S E LF ++V+ GL+ + F SR+ E S + + L +
Sbjct: 283 -EYDGDGWGSGRRKSNHVETKQLFVDLVERGLQTVVFAGSRQTAERYASDSADELRKRGE 341
Query: 555 H-LVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGS 613
H L D + Y+A + RR +E+ G L GV +T+ALELG+DVG +D L G+PG+
Sbjct: 342 HDLADGVGAYQAALTDDRRRELEQGLQSGDLRGVWSTSALELGVDVGGLDAVLLDGYPGT 401
Query: 614 IASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQ 673
+QQAGR+GR P+L V E LDQY ++ P+ LF++ E + +N ++L
Sbjct: 402 RMRAFQQAGRAGRGTDPALVALVGGEDQLDQYVLRNPDALFETGAEQAVTNPENEQLLPG 461
Query: 674 HLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPS 733
H+ AA E+ LS D+++FG ++ L++ G L + + ++G+ P
Sbjct: 462 HVHAAACENWLS-PDDDRHFGETFPDVVSGLESAGKLDR----RQTDQGMRWLGN-GSPH 515
Query: 734 HTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKI 793
H +++R ++ +++ +V+ ++ A + GA+Y HQG Y V +L+L++ +
Sbjct: 516 HEMNLRTVDDGEVKLV--AKGDVIAKLSVEDALRDAHPGAIYHHQGRRYEVTDLDLNAGV 573
Query: 794 ALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRL 853
A + YFT+ I V +D + + + +T G+ R
Sbjct: 574 AELDRTWADYFTRVLHDKTITVEADLAERRLPTREDVPVRFASVTMRKQIT----GYERR 629
Query: 854 WRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQN-FSFRSG------------- 899
SG + L LP+ + E++A++ VP ++ + Q + SG
Sbjct: 630 DGSSGEVLGQRSLDLPETTLETKALYHTVPSDLEREIRQGAYGAESGSESGDGVQSGDAV 689
Query: 900 ------------LHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPG 947
+HAA HA++ + P C+ D+ H P I +YD +PG
Sbjct: 690 TDGGDDGDFPGAIHAAEHAMISMFPFEYLCDRGDIGGLSTPRHPHTGEPT-IFIYDGYPG 748
Query: 948 GTGVSK 953
G G+++
Sbjct: 749 GIGLTR 754
>gi|448654533|ref|ZP_21681459.1| ATP-dependent helicase [Haloarcula californiae ATCC 33799]
gi|445766381|gb|EMA17508.1| ATP-dependent helicase [Haloarcula californiae ATCC 33799]
Length = 809
Score = 299 bits (766), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 217/784 (27%), Positives = 360/784 (45%), Gaps = 93/784 (11%)
Query: 217 QGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVA 276
+GQ+V + R A + + D L+ GI+ LY+HQ ++I A +G NVV+A
Sbjct: 15 EGQVVDQRTVPGRGAQTADC--EIADRLAGVLEDRGITNLYTHQVDAIEAVRSGDNVVLA 72
Query: 277 TMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL--LAMTKAFDASIDIG 334
T T+SGKSL Y +P E + D ++ LY+ P AL DQ L LA F + + +
Sbjct: 73 TETASGKSLAYTVPAFER-ALDRRATTLYIAPQVALINDQTETLSELAQGLGFASGVSVA 131
Query: 335 VYDGDTTQKDRMWLRD-NARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVY 393
Y G ++ ++ +R+ +L+T PDMLH ILP+ RL +
Sbjct: 132 QYTGRQSKSEKEAIRERQPTVLLTTPDMLHYGILPH---------AHRLWDW-------- 174
Query: 394 LIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSH------------VYGSDPSFVF 441
F + VVIDE H Y+G FG H +L++RRL R+ P +V
Sbjct: 175 -FFQRLETVVIDEVHGYRGVFGSHVSLVMRRLQRVAERFDAGGTGTGSDGGTAGGPEWVC 233
Query: 442 STATSANPREHCMELANLS--TLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDD 499
+AT NP EH + + L+ D S + ++LWNP + D
Sbjct: 234 CSATIGNPVEHAAAVTGQPEPSFVLVDEDASASGPRHWLLWNPP------------EYDG 281
Query: 500 TRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LVD 558
+ + S E LF ++V+ GL+ + F SR+ E S + + L + H L D
Sbjct: 282 DGWGSGRRKSNHVETKQLFVDLVERGLQTVVFAGSRQTAERYASDSADELRKRGEHDLAD 341
Query: 559 SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLW 618
+ Y+A + RR +E+ G L GV +T+ALELG+DVG +D L G+PG+ +
Sbjct: 342 GVGAYQAALTDDRRRELEQGLQSGDLRGVWSTSALELGVDVGGLDAVLLDGYPGTRMRAF 401
Query: 619 QQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCA 678
QQAGR+GR P+L V E LDQY ++ P+ LF++ E + +N ++L H+ A
Sbjct: 402 QQAGRAGRGTDPALVALVGGEDQLDQYVLRNPDALFETGAEQAVTNPENEQLLPGHVHAA 461
Query: 679 ALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISI 738
A E+ LS D+++FG ++ L++ G L + + ++G + P H +++
Sbjct: 462 ACENWLS-PDDDRHFGETFPDVVSGLESAGKLDR----RQTDQGMRWLG-KGSPHHEMNL 515
Query: 739 RAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQK 798
R ++ +++ +V+ ++ A + GA+Y HQG Y V +L+L++ +A +
Sbjct: 516 RTVDDGEVKLV--AKGDVIAKLSVEDALRDAHPGAIYHHQGRRYEVTDLDLNAGVAELDR 573
Query: 799 ADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSG 858
YFT+ I V +D + + + +T G+ R SG
Sbjct: 574 TWADYFTRVLHDKTITVEADLAERRLPTREDVPVRFASVTMRKQIT----GYERRDGSSG 629
Query: 859 IIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQN-FSFRSG------------------ 899
+ L LP+ + E++A++ VP ++ + Q + SG
Sbjct: 630 EVLGQRSLDLPETTLETKALYHTVPSDLEREIRQGAYGAESGSESGDGVQSGDAVTDGGD 689
Query: 900 ----------LHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGT 949
+HAA HA++ + P C+ D+ H P I +YD +PGG
Sbjct: 690 AGDDGDFPGAIHAAEHAMISMFPFEYLCDRGDIGGLSTPRHPHTGEPT-IFIYDGYPGGI 748
Query: 950 GVSK 953
G+++
Sbjct: 749 GLTR 752
>gi|448679101|ref|ZP_21689938.1| ATP-dependent helicase [Haloarcula argentinensis DSM 12282]
gi|445771199|gb|EMA22256.1| ATP-dependent helicase [Haloarcula argentinensis DSM 12282]
Length = 813
Score = 299 bits (765), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 218/785 (27%), Positives = 360/785 (45%), Gaps = 94/785 (11%)
Query: 217 QGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVA 276
+GQ+V + R A + + D L+ GI+ LY+HQ ++I A +G NVV+A
Sbjct: 15 EGQIVDQRTVPGRDARTADC--EVADRLAGVLEDRGITDLYTHQVDAIEAVRSGDNVVLA 72
Query: 277 TMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL--LAMTKAFDASIDIG 334
T T+SGKSL Y +P E + D ++ LY+ P AL DQ L LA F + + +
Sbjct: 73 TETASGKSLAYTVPAFER-ALDRRATTLYIAPQVALINDQTETLSELAQGLGFASGVSVA 131
Query: 335 VYDGDTTQKDRMWLRD-NARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVY 393
Y G ++ ++ +R+ +L+T PDMLH ILP+ RL +
Sbjct: 132 QYTGRQSKSEKEAIRERQPTVLLTTPDMLHYGILPH---------AHRLWDW-------- 174
Query: 394 LIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSD------------PSFVF 441
F + VVIDE H Y+G FG H +L++RRL R+ P +V
Sbjct: 175 -FFQRLETVVIDEVHGYRGVFGSHVSLVIRRLQRVAERFDAGGTGTGSDGGTAGGPEWVC 233
Query: 442 STATSANPREHCMELANLS--TLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDD 499
+AT NP EH + + L+ D S + ++LWNP + D
Sbjct: 234 CSATIGNPVEHAAAVTGQPEPSFVLVDEDASASGPRHWLLWNPP------------EYDG 281
Query: 500 TRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LVD 558
+ + S E LF ++V+ GL+ + F SR+ E S + + L H L D
Sbjct: 282 DGWGSGRRKSNHVETKQLFVDLVERGLQTVVFAGSRQTAERYASDSADELRSRGEHDLAD 341
Query: 559 SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLW 618
S+ Y+A + RR +E+ G L GV +T+ALELG+DVG +D L G+PG+ +
Sbjct: 342 SVGAYQAALTDDRRRELEQGLQSGDLRGVWSTSALELGVDVGGLDAVLLDGYPGTRMRAF 401
Query: 619 QQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCA 678
QQAGR+GR P+L V E LDQY ++ P+ LF++ E + +N ++L H+ A
Sbjct: 402 QQAGRAGRGTDPALVALVGGEDQLDQYVLRNPDALFETGAEQAVTNPENEQLLPDHVHAA 461
Query: 679 ALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISI 738
A E+ LS D+++FG ++ L++ G L + + ++G+ P H +++
Sbjct: 462 ACENWLS-PDDDRHFGETFPDVVSGLESAGKLDR----RQTDQGMRWLGN-GSPHHDMNL 515
Query: 739 RAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQK 798
R ++ +++ +V+ ++ A + GA+Y HQG Y V +L++ + +A +
Sbjct: 516 RTVDDGEVKLV--AKGDVIAKLPVEDALRDAHPGAIYHHQGRRYEVTDLDIDTGVAELDR 573
Query: 799 ADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSG 858
YFT+ I V D + + + +T G+ R SG
Sbjct: 574 TWADYFTRVLHDKTITVEADLAERRLPTRDDVPVRFASVTMRKQIT----GYERRDGSSG 629
Query: 859 IIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQN-FSFRSGL----------------- 900
+ L LP+ + E++A++ VP ++++ + Q + SGL
Sbjct: 630 EVLGQRSLDLPETTLETKALYHTVPSALESELRQGAYGAESGLRSECGSDGGDQSGDAAT 689
Query: 901 ------------HAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGG 948
HAA HA++ + P C+ D+ H P I +YD +PGG
Sbjct: 690 DGGDAGDFPGAIHAAEHAMISMFPFEYLCDRGDIGGLSTPRHPHTGEPT-IFIYDGYPGG 748
Query: 949 TGVSK 953
G+++
Sbjct: 749 IGLTR 753
>gi|448689486|ref|ZP_21695070.1| ATP-dependent helicase [Haloarcula japonica DSM 6131]
gi|445777757|gb|EMA28717.1| ATP-dependent helicase [Haloarcula japonica DSM 6131]
Length = 810
Score = 299 bits (765), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 220/782 (28%), Positives = 358/782 (45%), Gaps = 91/782 (11%)
Query: 217 QGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVA 276
+GQ+V + R A + + D L+ GI+ LY+HQ ++I A G NVV+A
Sbjct: 15 EGQVVDQRTVPGRDARTADC--EVTDRLAGVLEDRGITDLYAHQVDAIEAVRDGDNVVLA 72
Query: 277 TMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL--LAMTKAFDASIDIG 334
T T+SGKSL Y +P E + D ++ LY+ P AL DQ L LA F + + +
Sbjct: 73 TETASGKSLAYTVPAFER-ALDRRATTLYIAPQVALINDQTETLSELAQGLGFASGVSVA 131
Query: 335 VYDGDTTQKDRMWLRD-NARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVY 393
Y G ++ ++ +R+ +L+T PDMLH ILP+ RL +
Sbjct: 132 QYTGRQSKSEKEAIRERQPTVLLTTPDMLHYGILPH---------AHRLWDW-------- 174
Query: 394 LIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLC------SHVYGSD------PSFVF 441
F + VVIDE H Y+G FG H +L++RRL R+ S SD P +V
Sbjct: 175 -FFQRLETVVIDEVHGYRGVFGSHVSLVMRRLQRIAERFDAGSRGTRSDTGTEGGPEWVC 233
Query: 442 STATSANPREHCMELANLS--TLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDD 499
+AT NP +H + + L+ D S + ++LWNP + D
Sbjct: 234 CSATIGNPIKHAAAVTGQPEPSFALVDEDSSASGPRHWLLWNPP------------EYDG 281
Query: 500 TRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LVD 558
+ + S E LF ++V+ GL+ + F SR+ E S + + L H L D
Sbjct: 282 GGWGSGRRKSNHVETKQLFVDLVERGLQTVVFAGSRQTAERYASDSADELRSRGEHDLAD 341
Query: 559 SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLW 618
S+ Y+A + RR +E+ G L GV +T+ALELG+DVG +D L G+PG+ +
Sbjct: 342 SVGAYQAALTDDRRRELEQGLQSGDLRGVWSTSALELGVDVGGLDAVLLDGYPGTRMRAF 401
Query: 619 QQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCA 678
QQAGR+GR P+L V E LDQY ++ P LF++ E + +N ++L H+ A
Sbjct: 402 QQAGRAGRGTDPALVALVGGEDQLDQYVLRNPNALFETGAEQAVTNPENEQLLPDHVHAA 461
Query: 679 ALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISI 738
A E+ LS D+++FG ++ L++ G L + + ++G+ P H +S+
Sbjct: 462 ACENWLS-PDDDRHFGETFPDVVSGLESAGKLDR----RQTDQGMRWLGN-GSPHHEMSL 515
Query: 739 RAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQK 798
R ++ +++ +V+ + A + GA+Y HQG Y V EL+L + +A +
Sbjct: 516 RTVDDGEVKLV--AKGDVIATLSVEDALRDAHPGAIYHHQGRHYEVTELDLDAGVAELDR 573
Query: 799 ADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSG 858
YFT+ I V +D + + + +T G+ R SG
Sbjct: 574 TWADYFTRVLHDKTITVEADLAERRLPTREDVPVRFASVTMRKQIT----GYERRDGSSG 629
Query: 859 IIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNF------------------------ 894
+ L LP+ + E++A++ VP +++ + +
Sbjct: 630 EVLGQRPLDLPETTLETKALYHTVPSDLESEIRKRAYGAESGPSGGDGNRPGDAATDGGS 689
Query: 895 ---SFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGV 951
F +HAA HA++ + P C+ D+ H P I +YD +PGG G+
Sbjct: 690 EPGDFPGAIHAAEHAMISMFPFEYLCDRGDIGGLSTPRHPHTGEPT-IFIYDGYPGGIGL 748
Query: 952 SK 953
++
Sbjct: 749 TR 750
>gi|448301386|ref|ZP_21491379.1| hypothetical protein C496_17527 [Natronorubrum tibetense GA33]
gi|445584122|gb|ELY38446.1| hypothetical protein C496_17527 [Natronorubrum tibetense GA33]
Length = 898
Score = 298 bits (764), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 230/744 (30%), Positives = 357/744 (47%), Gaps = 89/744 (11%)
Query: 227 SARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLC 286
S R A V D L L+ LY+HQA+++ A +NV VAT TSSGK+
Sbjct: 38 SGRPAKTVPSADVLRPELAGPLEH----DLYTHQADALEALARDENVCVATSTSSGKTRV 93
Query: 287 YNLPV----LEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQ 342
Y + + LEA + S+A ++PTKAL++DQ R+L + I + VYDGDT +
Sbjct: 94 YAVQIARNYLEARARGGESTAYLLYPTKALSRDQERSLNDLFDELGLEITVRVYDGDTER 153
Query: 343 -KDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRF 401
++R +R+ A ++ITN ++ + L H +++R LS+ L+
Sbjct: 154 GQNRKQIREEADVIITNFAGVN-TYLHDHDRWARFLSSCELL------------------ 194
Query: 402 VVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLST 461
VIDE+H Y G G H A I+RRL R+ S+ Y +DP +V ++AT NP EH L +
Sbjct: 195 -VIDESHTYTGVHGMHVAWIVRRLKRVLSY-YDADPQYVLTSATIGNPGEHSAALVD-EP 251
Query: 462 LELIQNDGSPCAQKLFVLWNPTSCLR--SVLNKSQ---TDMDDTRNAANKTSSPIS---E 513
+ ++ DGSP + VLWNP R S ++ + D DD R A + + E
Sbjct: 252 VTVVDEDGSPAGPRDLVLWNPPVRARDDSTDDRDEWRKEDTDDEREAEDAVLERVPATVE 311
Query: 514 VSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEE----TAPHLVDSICVYRAGYVA 569
L + + + + F SRKL EL + + + T P +I Y AG+
Sbjct: 312 APRLLSHLTYQDAQTLLFTPSRKLAELSVKRASKHRHDNHYYTNPDRGSAIEPYHAGHSR 371
Query: 570 EDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRER 629
+ R E G L GVA+TNALELGID+G +D T+ LG+PG S WQQ GR+GR +
Sbjct: 372 KKRHGTEHQLKTGILDGVASTNALELGIDIGAMDATVQLGYPGQRQSFWQQIGRAGRGAK 431
Query: 630 PSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYD 689
+L+V VA LDQY + P+ L ++ +E +D N V QHL CAA E L D
Sbjct: 432 RALSVLVAEHRTLDQYVVNNPDYLLENDVEDAVVDIDNDAVFAQHLRCAADE----LAVD 487
Query: 690 EKYFGS-----GLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESE 744
E G L + + G L+ +L++ Y G + P +IS+ A E
Sbjct: 488 ESDAGGFADRERLERAVEMWRRAGQLTG--ALETGVS---YAGPPR-PQQSISLYATAGE 541
Query: 745 RYEV-----IDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSS--KIALCQ 797
YEV +D +++ +E + + + +EGAV +HQG Y + +++ S +
Sbjct: 542 EYEVELADGVDREADPEMEPLAKERVLRDFHEGAVRLHQGQQYEIIDVDHGSPRPSVTLR 601
Query: 798 KADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGS 857
+++Y+T+TR TD+ V + + I L + + L T + G
Sbjct: 602 PTNVEYYTRTR--TDVTVLDAVSEESRDIGDFTLHFGSGRVLVYHGTYDKVAIH----GG 655
Query: 858 GIIFDTVELYLPKYSYESQAVWIQVPQSV-KAVVEQ-----------------NFSFRSG 899
++ P S E+Q W++VPQ+V +A++E+ + + G
Sbjct: 656 KKKEQSIPTENPPLSMETQLCWLEVPQTVERALIEKYRSHSVPELEDGLAGTAHLGYAGG 715
Query: 900 LHAASHALLHVVPIYVRCNFSDLA 923
LHAA HA + V P+ + + DL
Sbjct: 716 LHAAEHATIGVAPLELMVDKRDLG 739
>gi|315605675|ref|ZP_07880708.1| ATP-dependent helicase [Actinomyces sp. oral taxon 180 str. F0310]
gi|315312630|gb|EFU60714.1| ATP-dependent helicase [Actinomyces sp. oral taxon 180 str. F0310]
Length = 880
Score = 298 bits (762), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 206/636 (32%), Positives = 315/636 (49%), Gaps = 74/636 (11%)
Query: 203 PLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAE 262
P +++ LR+ + +++ + R A P + A + G+++ ++HQ
Sbjct: 12 PSDLLNVLRRLSANDDRLLGSVTLPGRCAQFASWPSWVCPAVVEAWRRRGVARPWTHQRR 71
Query: 263 SIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSS----------ALYMFPTKAL 312
++ A G +VV+AT T SGKSL P+L L SS ALY+ PTKAL
Sbjct: 72 ALDALRGGSDVVLATGTGSGKSLAAWTPILSDLVEAEESSRISAIHRRPTALYLAPTKAL 131
Query: 313 AQDQLRALLAMTKAFDASIDIGV-----------------YDGDTTQKDRMWLRDNARLL 355
A DQL +L A+ + + G DGDT ++ + W R A L+
Sbjct: 132 AADQLASLTALLGQAARATERGAPEPDGVDERLRRVRAQCVDGDTPREAKEWARAGADLV 191
Query: 356 ITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFG 415
++NPD LH +LP H ++SR L++LRLI VIDEAH ++G G
Sbjct: 192 LSNPDFLHHVMLPAHQRWSRFLASLRLI-------------------VIDEAHHWRGVTG 232
Query: 416 CHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQK 475
H AL++RRL R+ H+ G+DP + +AT + R L + Q DGSP +
Sbjct: 233 SHVALLVRRLLRVAHHL-GADPRILMLSATVRDARAVGRALTGRDATAVTQ-DGSPAGEH 290
Query: 476 LFVLWNPTSCLRSVLNKSQTDMD---DTRNAANKTSS---PI------SEVSYLFAEMVQ 523
VLW R V + S+ D+ D +A T++ P+ +E + L V+
Sbjct: 291 ELVLWQG----RVVADASEVDISSFLDAIDAPPGTATLSVPLVRRSAGAEAAALGCAFVE 346
Query: 524 HGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGK 583
G R +AF RSR E V + R+ L A L + YR GY+ E+RR +E G
Sbjct: 347 EGARLLAFVRSRAGAEAVAAQIRDRLSSHASPLAGRVGAYRGGYLPEERRALEDAIRSGA 406
Query: 584 LCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLD 643
+ +A T+ALE+G+D+ +D TL +G+PG+ ASL QQ GR+GR P +V +A + PLD
Sbjct: 407 VRALATTSALEMGLDISGLDATLTVGWPGTRASLRQQIGRAGRAGAPGTSVLIASDNPLD 466
Query: 644 QYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITT 703
Y +++PE++ +E C ID N VL H+ AA E P++ D+ YFG L +
Sbjct: 467 AYLVRHPEEILGQ-VEACVIDPANPWVLAPHVAAAAAELPIT-ASDKAYFGEHLEAIAER 524
Query: 704 LKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEES 763
L+ GYL P A F + P+ +R S ++++ ++ V+ I+E+
Sbjct: 525 LRADGYLRRRP-----AGYFWDATRPERPTDLTDLRG-SSGDVQIVEARAGAVVGTIDEA 578
Query: 764 KAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKA 799
A V+ GA+Y+HQG T+ V L+LSS C A
Sbjct: 579 SADAHVFPGAIYIHQGRTFHV--LSLSSLTEPCAPA 612
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 9/162 (5%)
Query: 791 SKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGF 850
+++AL ++ T+ +T + V G +YA+ T +T
Sbjct: 662 ARVALVEEVRTPLRTRASTHTSVEVCGVEESYASG------DGAVTWHHGPTNVSTRVTD 715
Query: 851 YRLWRGSGIIF-DTVELYLPKYSYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALL 908
Y L R G+ F VEL LP ++ +++ W + P +KA + LHA HA++
Sbjct: 716 YDLLRLPGLEFIRNVELSLPTHTLATKSTWFTLAPVVLKAAGIEARDLAGTLHATEHAMI 775
Query: 909 HVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTG 950
++P+ C+ DL HD P + ++D GG G
Sbjct: 776 GMLPVVTTCDRWDLGGLSTERHDDTGLPT-VFVHDAFRGGAG 816
>gi|303276637|ref|XP_003057612.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460269|gb|EEH57563.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 716
Score = 298 bits (762), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 226/751 (30%), Positives = 354/751 (47%), Gaps = 122/751 (16%)
Query: 256 LYSHQAESIMASLA-GKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQ 314
LY HQ E+I A++ K+VVV+T T+SGKSLCY LP+L AL S+ AL +FP KALA
Sbjct: 1 LYRHQKEAIHAAVGEKKSVVVSTPTASGKSLCYVLPLLHALGQKKSARALVLFPLKALAN 60
Query: 315 DQLRALLAMTKAFDASIDI--GVYDGDTTQKDRMWLR------DNARLLITNPDMLHMSI 366
DQL L A +A +++ G DGD +D L D L++TNPD LH I
Sbjct: 61 DQLAKLKAFPEAARKALEAAEGNIDGDGEGEDAGALSSHWSPYDRVGLVLTNPDSLHHFI 120
Query: 367 LP-YHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRL 425
LP Y ++S+ + + VVIDEAH ++G G H A ++RR+
Sbjct: 121 LPGYPRKWSKSF------------------WANLTHVVIDEAHVHRGVAGSHFANVIRRV 162
Query: 426 CRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSC 485
RLC D FV ++AT +NPREH + L + + G P
Sbjct: 163 IRLCRVCGNDDVRFVCTSATISNPREHVLALTTKNPTCVTVRPGRP-------------- 208
Query: 486 LRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYT 545
RS ++ + D + A +++ +E + + A +V++ +RC+AF +R L E V
Sbjct: 209 -RSNNAAAKNNGGDEKTAQRRSA--YAEAAEVIASLVKNNVRCLAFVSARSLTESVCRDA 265
Query: 546 REILEETAPH----LVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGH 601
RE+L + LVDS YRAGY ++RR +E G++ + T+ALE+GIDVG
Sbjct: 266 RELLVKAGRQDLALLVDS---YRAGYSVKERRNLEHRLASGEVSALVCTSALEMGIDVGT 322
Query: 602 IDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECC 661
+D T+H+G P + +++WQQAGR+GRR SLAV VA E PLD +++ +P +LFK E
Sbjct: 323 LDATVHVGVPETASAMWQQAGRAGRRRGCSLAVVVAAERPLDGFYLAHPSELFKRRPESA 382
Query: 662 HIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTL-KNRGYLSSDPSLDSSA 720
ID N VLE HL CAA E P+ D K F ++ + L RG ++
Sbjct: 383 LIDPANVSVLEAHLPCAAFETPIDPKTDCKLFDDAEAARLFRLGAERGETTA-------- 434
Query: 721 KIFEYIGHEKMPSHTISIRAIES--ERYEVIDMQSNEV-------LEEIEESKAFFQVYE 771
F P H + +R S + + ++D+ + LE+IE +A ++Y
Sbjct: 435 -FFR-------PHHHVMLRGAPSGGDAWTLLDVTRGDSLQSGARELEKIEAHRAMSRIYP 486
Query: 772 GAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQL 831
G V++ + Y ++ + ++++A C++ T R+ T + + KD
Sbjct: 487 GCVHLSRHGQYKIERHDANARVAYCREYANPEVTYARERTAV----------MPLEKDPS 536
Query: 832 TKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELY-------------------LPKYS 872
+ + G R++ G + +T+ Y LP
Sbjct: 537 AGIRERKV------KRVGMARVFEGRVRVVETIHGYVVKRLHTQELIDEIPFNPGLPGSD 590
Query: 873 YESQAVWIQVP-QSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECP---- 927
+ + AVW +P + V++ + + R+ A + +VP C+ D+ C
Sbjct: 591 FVTDAVWWDLPGELVRSKIAPD-RLRAATQGALNVCAALVPAVAMCDARDVLGACDFLSS 649
Query: 928 ---NPHDSRYFPERILLYDRHPGGTGVSKQV 955
N D R+ LYD P G G++ +
Sbjct: 650 DGCNGSDGGTTGARMYLYDACPNGVGLASKT 680
>gi|412985456|emb|CCO18902.1| ATP-dependent RNA helicase [Bathycoccus prasinos]
Length = 976
Score = 297 bits (760), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 185/526 (35%), Positives = 275/526 (52%), Gaps = 57/526 (10%)
Query: 219 QMVHVEDISARKAVLVEIPDA----LLDNTKSALKSTGISKLYSHQAESIMASLAGKNVV 274
+ +HVE + A+ + V + + + D K + GI ++YSHQAE+I + G++VV
Sbjct: 99 ECLHVESVPAKISNSVPLENVDRNIVSDEMKLICRQVGIVRIYSHQAEAIRRARQGESVV 158
Query: 275 VATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQL----RALLAMTKAFD-- 328
++T T+SGKSLCY +P+LE + + ++ AL M+P KALA +Q R + A +A
Sbjct: 159 ISTPTASGKSLCYIIPILEMIMEEPNARALLMYPLKALANNQAESFQRFIDAAKRAVGGG 218
Query: 329 -------------------ASIDIGVYDGDTTQKDRMWLR--DNARLLITNPDMLHMSIL 367
A+ I V DGD+ +++ +R + R++ITNPD LH +
Sbjct: 219 ARQNGLTNHGVDLEKIARLANCQIKVCDGDSDAQEKAQIRAENTNRIIITNPDSLHWMLP 278
Query: 368 PYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCR 427
+H + NL LI V+DEAH + G G + AL+ RRL R
Sbjct: 279 QHHLWGKKFFGNLSLI-------------------VLDEAHIFHGVMGSNVALLFRRLMR 319
Query: 428 LCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLR 487
+C+ P F+ ++AT NP EH L T + ++ G+P +K F+LW P
Sbjct: 320 VCNSYGNPTPEFICTSATIRNPSEHVKALTTRDTSSVAES-GAPSGEKRFMLWQPAELKS 378
Query: 488 SVLNKSQTDMDDTRNAANKT-SSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTR 546
+ + DD A KT SP E + L A++ ++G+RC+ F SR CE V R
Sbjct: 379 TSKGGVEVSADDREMAEMKTRKSPNHEAAVLIADLAKNGIRCLCFVESRNQCESVKREVR 438
Query: 547 EIL-EETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVT 605
IL ++ +L + I YR GY +RR +E+ ++C + T+ALE+GIDVG +D T
Sbjct: 439 TILNKDNCSYLSNKIESYRGGYSRAERRELEKRLQSNQICALVCTSALEMGIDVGSLDAT 498
Query: 606 LHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDA 665
+H+G P + +SL QQAGR+GRR SLA+ +A E P+D Y+ E+LFK P E ID
Sbjct: 499 VHVGVPETASSLLQQAGRAGRRRGTSLALVIARENPIDAYYCDRYEELFKRPPEEAFIDP 558
Query: 666 QNHKVLEQHLVCAALEHPLSL--IYDEKYFGSGLSSGITTLKNRGY 709
QN +L HL CAA E L L +D K F LS+ KN Y
Sbjct: 559 QNEALLTLHLPCAAKELVLDLSSTFDTKMF--DLSTEEVEKKNEKY 602
Score = 40.0 bits (92), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 89/212 (41%), Gaps = 18/212 (8%)
Query: 756 VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFT----KTRDYT 811
++E ++ +A ++Y G ++ + TY VK+++ +IA C++ KT + T
Sbjct: 717 LVECVDSDRALMRLYVGGIHQTRDGTYEVKKIDTMKRIAFCEEYARNGLATVPKKTENIT 776
Query: 812 DIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWR----GSGIIFDTVELY 867
+ S N A + +++ T +L + Y +R SG VE
Sbjct: 777 ILDTSVAENC-AVRYNREVF--NTRVSLGNVRVEEFVQGYHRYRVTGADSGKSVSQVEFQ 833
Query: 868 LPKY--SYESQAVWIQVPQSV--KAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLA 923
P +Y+++++W +P+ V K E F+ G+ L + R + S
Sbjct: 834 TPLLCSNYQTKSLWFSLPEDVLNKIPPENVFAAILGVRNVCVELASSIAFCSRKDVSGSF 893
Query: 924 PECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
+P +S I +YD P G G+S ++
Sbjct: 894 RFSNDPPNSTCV---IFIYDCCPNGVGLSDKL 922
>gi|340358944|ref|ZP_08681444.1| ATP-dependent helicase [Actinomyces sp. oral taxon 448 str. F0400]
gi|339885414|gb|EGQ75133.1| ATP-dependent helicase [Actinomyces sp. oral taxon 448 str. F0400]
Length = 853
Score = 296 bits (758), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 237/831 (28%), Positives = 384/831 (46%), Gaps = 116/831 (13%)
Query: 197 DKSQLLPLEMVEHLRKGIGSQGQ-MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISK 255
D+ P+ + L + IG++ + +VH++ AR A + P + +A GI++
Sbjct: 3 DQPLHAPVRDLIGLLESIGAREERLVHLQRTPARPARHSDWPTWADPDLVAACARLGIAR 62
Query: 256 LYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSS-------------- 301
++HQ E+ + AG++ V++T T SGKSL LP ALS +L++
Sbjct: 63 PWTHQTEAAESLHAGRHTVISTGTGSGKSLAAWLP---ALSDNLTAQGGPDDVPGTGTAR 119
Query: 302 ----------SALYMFPTKALAQDQLRALLAMTKAFDA-------------SIDIGVYDG 338
+ LY+ PTKALA DQ L + +A ++ DG
Sbjct: 120 ARISAVGRRPTTLYLSPTKALAADQDACLTRLVAELEAVQREAGAPAGSLRTVRTATCDG 179
Query: 339 DTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLF 398
DT +R W R A +++TNPD LH S+LP H +++R L +LR
Sbjct: 180 DTPLAERDWARARADIVLTNPDFLHFSLLPGHERWTRFLRSLR----------------- 222
Query: 399 IRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVY--GSDPSFVFSTATSANPREHCMEL 456
++V+DE HAY+G G H AL++RRL RL + P+ + ++AT+A P L
Sbjct: 223 --YIVVDECHAYRGILGAHVALVVRRLLRLARRLAPDSPGPAVLCASATAAEPALTAARL 280
Query: 457 ANLS--TLELIQNDGSPCAQKLFVLWNPT-SCLRSVLNKSQTD----------------- 496
++ + + +D +P +++ LW P R+V +
Sbjct: 281 IGVAPEAVTAVTDDAAPAGERILALWQPALRDPRTVWEGPASPGVEAPDPAADASASNGS 340
Query: 497 -------MDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREIL 549
+D + + S+ + E + L +++ G R + F RSR+ E+V R L
Sbjct: 341 GPAGPGALDLAEDPEQRRSA-VVEAAELLVDLLSAGARALVFVRSRRSAEVVAERARRTL 399
Query: 550 EETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLG 609
E P LVD++ YR GY+ E+RR +E D G+L +A TNALELGIDV +D + G
Sbjct: 400 ELRLPSLVDTVAAYRGGYLPEERRALESDLRRGRLRALATTNALELGIDVTGLDAVIIAG 459
Query: 610 FPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHK 669
+PG+ SL QQAGR+GR +AV +A + PLD Y + +PE +F +P E D N
Sbjct: 460 WPGTRVSLGQQAGRAGRAGDRGVAVLIASDNPLDAYLVHHPEAVFAAP-EATVFDPANPY 518
Query: 670 VLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHE 729
VL HL AA E PL D FG S +T L RG L P A +
Sbjct: 519 VLAPHLCAAASEAPLREA-DIALFGLEDESLLTDLVARGALRRRP-----AGWYWNASLP 572
Query: 730 KMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNL 789
P ++R V++ + V+ ++ + A V+ GAVY+HQG Y+V EL+
Sbjct: 573 GRPQDLTALRGDGPPEVPVVEAATGAVVGTVDGAAADSTVHPGAVYIHQGRCYVVDELSE 632
Query: 790 SSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQAL-----ACTVT 844
+ I + +KA + Y T++ + + +I ++ T+ A + + VT
Sbjct: 633 EAAI-VTEKAAVGYRTRSCATSSV-----------RIIAERETRQWADGIRWSFGSVEVT 680
Query: 845 TTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQ-SVKAVVEQNFSFRSGLHAA 903
+ G+ RL + +L + ++ + AVW P+ +V+A LHAA
Sbjct: 681 SRVTGYMRLALPGMEVVSRHQLDMAEHILPTAAVWWTAPEAAVEAAGIAPCDMPGALHAA 740
Query: 904 SHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
HA + ++P+ C+ D+ H P + ++D H GG G +++
Sbjct: 741 EHASISMLPLLATCDRWDIGGLSIAVHSQTGAPT-VFVHDGHAGGAGFAER 790
>gi|225848219|ref|YP_002728382.1| helicase [Sulfurihydrogenibium azorense Az-Fu1]
gi|225644463|gb|ACN99513.1| helicase [Sulfurihydrogenibium azorense Az-Fu1]
Length = 798
Score = 296 bits (757), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 185/573 (32%), Positives = 295/573 (51%), Gaps = 69/573 (12%)
Query: 248 LKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMF 307
LK+ I KLYSHQ E I A L GK+VV+ T T+SGKS+ Y L +L+ + + S+ AL +F
Sbjct: 30 LKNNSI-KLYSHQVEGIKAVLEGKDVVITTPTASGKSMIYTLSILDQVCKNPSTKALLIF 88
Query: 308 PTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDN-ARLLITNPDMLHMSI 366
P ALA+DQ + + + + Y G T + +R ++ + LIT PDML I
Sbjct: 89 PLVALARDQESKIRSFIQRSGIKTSVANYSGSTDKDERYRIKSSPPNFLITTPDMLSKGI 148
Query: 367 LPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLC 426
LP+H + + +L +FVVIDE H+YKG G H + +++RL
Sbjct: 149 LPFHYTWEKFFEDL-------------------KFVVIDELHSYKGVLGSHVSNVIKRLN 189
Query: 427 RLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCL 486
R+ H G P ++ ++AT NP + + N +E I G+P +K+ + PTS
Sbjct: 190 RIVKHYTGELPIYICNSATIKNPVDFAKKFVNKEVIE-INKSGAPSPKKIINISKPTSN- 247
Query: 487 RSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTR 546
++ +L E + + + I F SRK EL +
Sbjct: 248 -------------------------EKLMHLLKEHLINDISTIVFIDSRKDVELFYKNMK 282
Query: 547 EILE-ETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVT 605
LE E LV I YR+GY +++R+ IE GKL + +T+ALE+GID+G+ID
Sbjct: 283 IFLEKEGHEELVSKISPYRSGYNSKERQEIENKMATGKLKVLISTSALEMGIDIGNIDSV 342
Query: 606 LHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDA 665
+ GFPG++ASLWQ+ GRSGRRE+ S+ Y+A LDQY++K P++LF +E I+
Sbjct: 343 IVKGFPGTLASLWQRFGRSGRREKESINYYIAKNDALDQYYVKNPKELFNRSVEEPVINP 402
Query: 666 QNHKVLEQHLVCAALEHPLSL--IYD-EKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKI 722
N +L++H++ AA E PL L + D EK L + G + S+++
Sbjct: 403 DNKYILKKHILVAAKEIPLELKDLTDKEKEVVRDLLEERKLIFKNGKFYVNKSVNTD--- 459
Query: 723 FEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTY 782
+IR+ E Y+++++ N+ + +I + AF+++Y+ AVY+H G TY
Sbjct: 460 -------------FNIRST-GESYDIVEVNQNKKIGDINQEYAFYEMYQDAVYLHGGSTY 505
Query: 783 LVKELNLSSKIALCQKADLKYFTKTRDYTDIHV 815
V + + + K+ ++ L Y+T T+I +
Sbjct: 506 KVLQKDDTEKVIYVEEQYLNYYTTPILQTEIDI 538
>gi|344210898|ref|YP_004795218.1| ATP-dependent helicase [Haloarcula hispanica ATCC 33960]
gi|343782253|gb|AEM56230.1| ATP-dependent helicase [Haloarcula hispanica ATCC 33960]
Length = 820
Score = 295 bits (756), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 217/795 (27%), Positives = 360/795 (45%), Gaps = 104/795 (13%)
Query: 217 QGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVA 276
+GQ+V + R A + + D L+ I+ LY+HQ ++I A G+NVV+A
Sbjct: 15 EGQIVDQRTVPGRDARTADC--EIADRLAGVLEDQSITDLYTHQVDAIEAVRGGENVVLA 72
Query: 277 TMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL--LAMTKAFDASIDIG 334
T T+SGKSL Y +P E + D ++ LY+ P AL DQ L LA F + + +
Sbjct: 73 TETASGKSLAYTVPAFE-RALDRRATTLYVAPQVALINDQTETLSELAQGLGFASGVSVA 131
Query: 335 VYDGDTTQKDRMWLRD-NARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVY 393
Y G ++ ++ +R+ +L+T PDMLH ILP+ RL +
Sbjct: 132 QYTGRQSKSEKEAIRERQPTVLLTTPDMLHYGILPH---------AHRLWDW-------- 174
Query: 394 LIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHV-YGSD---------------- 436
F + VV+DE H Y+G FG H +L++RRL R+ G D
Sbjct: 175 -FFQRLETVVVDEVHGYRGVFGSHVSLVMRRLQRIAERFDAGGDSSESNGRRGDSATAGG 233
Query: 437 PSFVFSTATSANPREHCMELANLS--TLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQ 494
P +V +AT NP EH + + L+ D S + ++LWNP
Sbjct: 234 PEWVCCSATIGNPVEHAAAVTGQPEPSFALVDEDASASGPRHWLLWNPPEY--------- 284
Query: 495 TDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAP 554
D + + S+ + E LF ++V+ GL+ + F SR+ E S + + L
Sbjct: 285 --EGDGWGSGRRKSNHV-ETKQLFVDLVERGLQTVVFAGSRQTAERYASDSADELRSRGE 341
Query: 555 H-LVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGS 613
H L DS+ Y+A + RR +E+ G L GV +T+ALELG+DVG +D L G+PG+
Sbjct: 342 HALADSVGAYQAALTDDRRRELEQGLQSGDLRGVWSTSALELGVDVGGLDAVLLDGYPGT 401
Query: 614 IASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQ 673
+QQAGR+GR P+L V E LDQY ++ P+ LF++ E + +N ++L
Sbjct: 402 RMRAFQQAGRAGRGTDPALVALVGGEDQLDQYVLRNPDALFETGAEQAVTNPENEQLLPN 461
Query: 674 HLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPS 733
H+ AA E+ LS D+++FG + L++ G L + + ++G + P
Sbjct: 462 HVHAAACENWLS-PDDDRHFGEPFPDVVADLESAGKLDR----RQTDQGMRWLG-KGSPH 515
Query: 734 HTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKI 793
H +++R ++ +++ +V+ ++ A + GA+Y HQG Y V +L+L++ +
Sbjct: 516 HEMNLRTVDDGEVKLV--AKGDVIAKLSVEDALRDAHPGAIYHHQGRRYEVTDLDLNAGV 573
Query: 794 ALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRL 853
A + YFT+ I V +D + + + +T G+ R
Sbjct: 574 AELDRTWADYFTRVLHDKTITVEADLAERRLPTREDVPVRFASVTMRKQIT----GYERR 629
Query: 854 WRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNF------------------- 894
SG + L LP+ + E++A++ VP +++ + Q
Sbjct: 630 DGSSGEVLGQRLLDLPETTLETKALYHTVPSDIESEIRQGAYGAESDSGGGSESGSGGGG 689
Query: 895 ----------------SFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPER 938
F +HAA HA++ + P C+ D+ H P
Sbjct: 690 GGQHGDAATDGGSEPGDFPGSIHAAEHAMISMFPFEYLCDRGDIGGLSTPRHPHTGEPT- 748
Query: 939 ILLYDRHPGGTGVSK 953
I +YD +PGG G+++
Sbjct: 749 IFIYDGYPGGIGLTR 763
>gi|448310343|ref|ZP_21500188.1| hypothetical protein C493_00970 [Natronolimnobius innermongolicus
JCM 12255]
gi|445608287|gb|ELY62143.1| hypothetical protein C493_00970 [Natronolimnobius innermongolicus
JCM 12255]
Length = 918
Score = 294 bits (753), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 226/725 (31%), Positives = 346/725 (47%), Gaps = 94/725 (12%)
Query: 254 SKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPV----LEALSHDLSSSALYMFPT 309
+ LY+HQA ++ A +NV VAT TSSGK+ Y L + LEA + D +S+A ++PT
Sbjct: 61 NDLYTHQAAALEALADDENVCVATSTSSGKTRIYALQIARHYLEARARDAASTAYLLYPT 120
Query: 310 KALAQDQLRALLAMTKAFDASIDIGVYDGDTTQ-KDRMWLRDNARLLITNPDMLHMSILP 368
KAL++DQ R+L + I + VYDGDT + ++R +R+ A ++ITN ++ + L
Sbjct: 121 KALSRDQERSLNDLYDDLGLDITVRVYDGDTERGENRRRIREEADVIITNFAGVN-TYLH 179
Query: 369 YHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRL 428
H +++R LS L+ VIDE+H Y G G H A I+RRL R+
Sbjct: 180 DHDRWARFLSACDLL-------------------VIDESHTYTGVHGMHVAWIVRRLKRV 220
Query: 429 CSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRS 488
+ YG+DP FV ++AT NP H L + + ++ DGSP + VLWNP R
Sbjct: 221 LDY-YGADPQFVLTSATIGNPGAHSSALID-EPVTVVDEDGSPTGPRDLVLWNPPPKDRE 278
Query: 489 VLNKSQTDM---DDTRNAANKTSSPISEVSY-----------LFAEMVQHGLRCIAFCRS 534
+ + D D+ + A +P +V+ + + + + + F S
Sbjct: 279 DPSHDERDEWRDDEDGDGATSEKAPADDVALERVPATVEAPRILSHLTYQDAQTLLFTPS 338
Query: 535 RKLCELVLSYTREILEET-----APHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAA 589
RKL EL + + + P +I Y AG+ +R E G L GVA+
Sbjct: 339 RKLAELSVKRASKHRHDNRRYYANPDRGSAIEPYHAGHSRTNRHGTEHQLKTGVLDGVAS 398
Query: 590 TNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKY 649
TNALELGID+G +D T+ LG+PG S WQQ GR+GR R +L+V VA LDQY +
Sbjct: 399 TNALELGIDIGEMDATVQLGYPGQRQSFWQQIGRAGRGSRRALSVLVAEHRTLDQYVVND 458
Query: 650 PEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGS-----GLSSGITTL 704
P+ L ++ +E +D N V QHL CAA E L DE G+ L +
Sbjct: 459 PDYLLENDVEDAVVDIDNDAVFAQHLRCAADE----LAVDESDVGAFADRDRLERAVEMW 514
Query: 705 KNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEV-----IDMQSNEVLEE 759
+ G L L++ Y+G + P ++S+ A E YEV +D +S+ +E
Sbjct: 515 RRAGQLRG--HLETGVS---YVGPPR-PQRSVSLYATTGEEYEVRLADGVDERSDPEMEP 568
Query: 760 IEESKAFFQVYEGAVYMHQGHTYLVK--ELNLSSKIALCQKADLKYFTKTRDYTDIHVSG 817
+ + + +EGAV +HQG Y V E + D+ Y+T+TR TD+ V
Sbjct: 569 LAKERVLRDFHEGAVRLHQGQQYEVTAVEHGAPRPSVTLRPTDVDYYTRTR--TDVTVLD 626
Query: 818 GNNAYATKISKDQLTKTTAQALACTVTTTWFGFY-RLWRGSGIIFDTVELYLPKYSYESQ 876
+ + ++ + L + L T + R GI D P S E+Q
Sbjct: 627 AVSEESREVGEFTLHFGRGRVLVYHGTYDKVAVHGGKKREQGIPTDN-----PPLSMETQ 681
Query: 877 AVWIQVPQSVK-AVVEQ-----------------NFSFRSGLHAASHALLHVVPIYVRCN 918
W++VPQ+V+ A++E+ + + GLHAA HA + V P+ + +
Sbjct: 682 LCWLEVPQNVEDALIEKYRDVSVPDLEDGLADTAHLGYAGGLHAAEHATIGVAPLELMVD 741
Query: 919 FSDLA 923
DL
Sbjct: 742 KRDLG 746
>gi|222476130|ref|YP_002564651.1| DEAD/DEAH box helicase domain protein [Halorubrum lacusprofundi
ATCC 49239]
gi|222454501|gb|ACM58765.1| DEAD/DEAH box helicase domain protein [Halorubrum lacusprofundi
ATCC 49239]
Length = 855
Score = 294 bits (753), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 231/776 (29%), Positives = 355/776 (45%), Gaps = 97/776 (12%)
Query: 218 GQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVAT 277
GQ+ +I AR+ V D L L+ +SHQAE++ G NV VAT
Sbjct: 52 GQVHENFEIPAREEQTVPAGDVLPPKIAQNLEF----NPWSHQAEALQVLDRGDNVCVAT 107
Query: 278 MTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQ---LRALLAMTKAFDASIDIG 334
TSSGK+L Y L + D + +L ++PTKAL++DQ L L T D I +G
Sbjct: 108 STSSGKTLVYGLHIARQYLEDPETRSLIVYPTKALSRDQEQELNEFLRNTLGLD--ISVG 165
Query: 335 VYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYL 394
VYDGDT +++ +RD ++ITN L+ + +H ++ SN L
Sbjct: 166 VYDGDTKSEEKSRIRDECNVVITNFVGLNQYLESHH-LWADFHSNCSL------------ 212
Query: 395 IFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCM 454
VVIDEAH + G G H A ILRR R+ + YG DP +V +TAT NP EH +
Sbjct: 213 -------VVIDEAHMWTGLGGMHVAWILRRAQRIIDY-YGGDPQYVLTTATIGNPTEHAL 264
Query: 455 ELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEV 514
L ++ DGSP + V W+P ++ DD + A E
Sbjct: 265 ALTG-EPAAVVDEDGSPRGIRHLVFWDPP------MSGDDGFTDDIDSPALSKRPATVEA 317
Query: 515 SYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVD--SICVYRAGYVAEDR 572
++A M Q ++ + FC SRKL EL ++ + + + + Y AG+ + R
Sbjct: 318 PEVWAHMCQKNVQSLLFCDSRKLTELSVNRAKRFISDPKNRYQGRPDLASYHAGHGKQSR 377
Query: 573 RRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSL 632
R E G+L GV+ T+ALE+GI++G +D T+ +G+PGS S WQ+ GRSGR R +L
Sbjct: 378 RGTEYQLKEGQLDGVSTTSALEVGINIGGVDGTVLMGYPGSRQSFWQRIGRSGRGTRDAL 437
Query: 633 AVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKY 692
+V+V LDQY +++PE + + E +D N+ V Q L CAA E PL+ E +
Sbjct: 438 SVFVPSHSTLDQYILRHPEYVLEEDHESAVVDLDNNPVYLQQLNCAAQELPLTRDDAEDF 497
Query: 693 FGSG-LSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEV--- 748
G L + + +G L SLDS H P IS+ + ++V
Sbjct: 498 GGEERLERAVEYGRRKGDLEG--SLDSGV----MYAHRDRPQDAISLYSSGGNTFDVRLA 551
Query: 749 ----IDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKEL--NLSSKIALCQKADLK 802
ID Q I +A+ +EGA +HQG Y V EL ++ +KA++
Sbjct: 552 GDGSIDHQP------IGRDRAYRDYHEGATVLHQGEQYQVVELREDIPQPYISLEKANVS 605
Query: 803 YFTKTRDYTDIHVSGGNNAYATKISKD-QLTKTTAQALACTVTTTWFGFYRLWRGSGIIF 861
Y+T+++ G N Y T + ++ T TV+ + + + GSG +
Sbjct: 606 YYTQSQ--------GQVNIYDTVVEDSREVGPFTLNWGYGTVSIHYSTYLKREIGSGDVL 657
Query: 862 D-TVELYLPKYSYESQAVWIQVPQSVKAVVEQNFS----------------FRSGLHAAS 904
+ E +P +Q W + P ++ + S + G+HA
Sbjct: 658 ELGNETGVPPLEMRTQLCWAETPNDIERAMLNKHSEYHNPECINLPPRLHGYLGGIHAVE 717
Query: 905 HALLHVVPIYVRCNFSDLAP----ECP-NPHDSRYFPERILLYDRHPGGTGVSKQV 955
HA++ V P+ ++ + D+ P NP S +F +YD GG G S+ +
Sbjct: 718 HAMIAVSPLELKVDGGDIGGLATNRLPGNPDKSGWF-----IYDGIEGGLGFSRSI 768
>gi|448574575|ref|ZP_21641337.1| DEAD/DEAH box helicase domain protein [Haloferax larsenii JCM
13917]
gi|445732926|gb|ELZ84503.1| DEAD/DEAH box helicase domain protein [Haloferax larsenii JCM
13917]
Length = 855
Score = 293 bits (749), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 231/770 (30%), Positives = 353/770 (45%), Gaps = 85/770 (11%)
Query: 218 GQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVAT 277
GQ+ +I AR+ V D L L+ +SHQAE++ G NV VAT
Sbjct: 52 GQVHENFEIPAREEQTVPAGDVLPPKIARNLEF----DPWSHQAEALQVLDRGDNVCVAT 107
Query: 278 MTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQ---LRALLAMTKAFDASIDIG 334
TSSGK+L Y L + D + +L ++PTKAL++DQ L L T D I +G
Sbjct: 108 STSSGKTLVYGLHIARQYLEDPETRSLIVYPTKALSRDQEQELNEFLRNTLGLD--ISVG 165
Query: 335 VYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYL 394
VYDGDT +++ +RD ++ITN L+ + +H ++ SN L
Sbjct: 166 VYDGDTKSEEKSRIRDECNVVITNFVGLNQYLESHH-LWADFHSNCSL------------ 212
Query: 395 IFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCM 454
VVIDEAH + G G H A ILRR R+ + YG DP +V +TAT NP EH +
Sbjct: 213 -------VVIDEAHMWTGLGGMHVAWILRRAQRIIDY-YGGDPQYVLTTATIGNPTEHAL 264
Query: 455 ELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEV 514
L ++ DGSP + V W+P L DD + A E
Sbjct: 265 ALTG-EPAAVVDEDGSPRGIRHLVFWDPPMSGDDGL------TDDIDSPALSKRPATVEA 317
Query: 515 SYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILE--ETAPHLVDSICVYRAGYVAEDR 572
++A M Q ++ + FC SRKL EL ++ + + E + Y AG+ + R
Sbjct: 318 PEVWAHMCQKNVQSLLFCDSRKLTELSVNRAKRFISDPENRYQGRPDLASYHAGHGKQSR 377
Query: 573 RRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSL 632
R E G L GV+ T+ALE+GI++G +D T+ +G+PGS S WQ+ GRSGR R +L
Sbjct: 378 RGTEYQLKEGHLDGVSTTSALEVGINIGGVDGTVLMGYPGSRQSFWQRIGRSGRGTRDAL 437
Query: 633 AVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKY 692
+V+V LDQY +++PE + + E +D N+ V Q L CAA E PLS E +
Sbjct: 438 SVFVPSHSTLDQYILQHPEYVLEEDHESAVVDLDNNPVYLQQLNCAAQELPLSRDDAEDF 497
Query: 693 FGSG-LSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDM 751
G L + + +G L SLDS H P IS+ + ++V
Sbjct: 498 GGEERLERAVEYGRRKGDLEG--SLDSGV----MYAHRDRPQDAISLYSSGGNTFDVRLA 551
Query: 752 QSNEV-LEEIEESKAFFQVYEGAVYMHQGHTYLVKEL--NLSSKIALCQKADLKYFTKTR 808
+ V + I +A+ +EGA +HQG Y V EL ++ +KA++ Y+T+++
Sbjct: 552 GNGSVDHQPIGRDRAYRDYHEGATVLHQGEQYQVVELREDIPQPYISLEKANVSYYTQSQ 611
Query: 809 DYTDIHVSGGNNAYATKISKD-QLTKTTAQALACTVTTTWFGFYRLWRGSGIIFD-TVEL 866
G N Y T + ++ T TV+ + + + G+G + + E
Sbjct: 612 --------GQVNIYDTVVEDSREVGPFTLNWGYGTVSVHYSTYLKREIGTGDVLELGNET 663
Query: 867 YLPKYSYESQAVWIQVPQSVKAVVEQNFS----------------FRSGLHAASHALLHV 910
+P +Q W + P ++ + S + G+HA HA++ V
Sbjct: 664 GVPPLEMRTQLCWAETPNDIERAMLNKHSEYHNPECINLPPRLHGYLGGIHAVEHAMIAV 723
Query: 911 VPIYVRCNFSDLAP----ECP-NPHDSRYFPERILLYDRHPGGTGVSKQV 955
P+ ++ + D+ P NP S +F +YD GG G S+ +
Sbjct: 724 SPLELKVDGGDIGGLATNRLPGNPEKSGWF-----IYDGIEGGLGFSRSI 768
>gi|219124797|ref|XP_002182682.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406028|gb|EEC45969.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 1321
Score = 293 bits (749), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 258/895 (28%), Positives = 393/895 (43%), Gaps = 226/895 (25%)
Query: 252 GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKA 311
G +LY+HQA +I + LAG + V T T SGKSLC+ LP L A H S L +FPTKA
Sbjct: 324 GTKQLYTHQAAAIASILAGTHTSVCTGTGSGKSLCFLLPTLTAAYHGHGVS-LLLFPTKA 382
Query: 312 LAQDQLRALLAMTKA---FDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILP 368
LAQDQL L + ++ + I + DGDT +R + + +++TNPD LH ++LP
Sbjct: 383 LAQDQLAKLTKLLQSDADLASRIRVATLDGDTAHANRAEIAQSCNVILTNPDTLHAAVLP 442
Query: 369 -YHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCR 427
+ + +LS +RFVVIDEAH Y+GAFG H AL+L RL R
Sbjct: 443 HWKTTYGTMLSA-------------------VRFVVIDEAHMYEGAFGAHVALVLGRLAR 483
Query: 428 L-------CSHVYGS-------DPSFVFSTATSANPREHCMELANLSTLE---------- 463
+ S YG+ P FV ++AT P +H L +S+ +
Sbjct: 484 ISLVAAAAVSQDYGTATAAPLRPPVFVSTSATLPWPEQHFRLLCPISSTDSVAVFTAEKD 543
Query: 464 ---------------LIQNDGSPCAQKLFVLWNPTSCLR-------SVLNKSQ------T 495
++ DG+ + F+ +P + + S++ K + T
Sbjct: 544 GSPRSAKHFWVWNPPILHQDGTSTGKVRFLPTHPPASMTPDEQPKASLVGKKRPRTQRNT 603
Query: 496 DMDDTRNAANKTS-------------SPI--------SEVSYLFAEMVQHGLRCIAFCRS 534
+ T A K++ P E + L A+ V +G+RCIAFC++
Sbjct: 604 RISSTNQAKVKSNHHGYDPQLQAFGHGPARLHRRHAADETALLLAQAVANGIRCIAFCKT 663
Query: 535 RKLCELVLSYTREIL--EETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNA 592
R L E V IL E++ L + YR GY +RR+IE+ F +L GV TNA
Sbjct: 664 RNLVEWVFERALTILQKEDSTRSLASKVESYRGGYSMLERRQIEQRLFRTELLGVVGTNA 723
Query: 593 LELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRER-----PSLAVYVAFEGPLDQYFM 647
LELG+D+G ID+TLH G+P S ASL QQAGR+GR PS AV V F P +Q+
Sbjct: 724 LELGVDIGGIDLTLHCGYPSSYASLLQQAGRAGRGGTARLNVPSCAVVVCFNSPSEQHIW 783
Query: 648 KYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLS--------------------LI 687
++P+ L + H N +++ HL+CA+ E PL+ L+
Sbjct: 784 RHPKTLLSKGVSAPHTIPINSGLVQGHLLCASEEFPLTGKYTPTTIQSTAKAAKVHHDLL 843
Query: 688 YDEKYFGSGL---SSGITTLKNRGYLSSD----PSLDSSAKIFEYIGHEKMPS--HTISI 738
D FG G+ + L++ G ++ + P+ S KI Y H M +SI
Sbjct: 844 NDYDLFG-GMDIYEEALDALRSTGSVTEEIIATPAA-SFGKITIYKAHPLMKKAWSRVSI 901
Query: 739 RAIESERYEVIDMQ-------------SNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVK 785
R+IE Y V+D+ V++ + S+ F+ + GA+ H+G Y V
Sbjct: 902 RSIEPVNYAVVDISHPGQGGRTNGIHDEGAVMDTLPYSRIFYHAHPGAIITHRGRKYKVL 961
Query: 786 EL---------NLS-----SKIALCQKADLKYFTKTRDYTDIHVS----------GGNNA 821
+ N S S A + KY TR +++H++ N++
Sbjct: 962 SMTRPPAFTPENFSYGRSMSLAAFAKPTGAKY--STRPLSNMHITVVKQMERIQLEPNSS 1019
Query: 822 YATKIS-----------------------------------KDQLTKTTAQALACTVTTT 846
+ T+ S + L+ T A V +
Sbjct: 1020 FVTRDSFGAKSVDFSYELEQADSLSSSIPSKQSNQKQEESDEAGLSSTLAGYGIVNVKRS 1079
Query: 847 WFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQ-NFSFRSGLHAASH 905
G+ +L + EL LP+ +ES VW A+ + ++ G+HA SH
Sbjct: 1080 VHGYKKLSLITRAELSRTELSLPELEFESFGVWFDT--DAGALTPRLGETYGPGVHALSH 1137
Query: 906 ALLHVVPIY----VRCNFSDLAPECPNPHDSRYF-PERILLYDRHPGGTGVSKQV 955
A+L V P++ VR SDL EC D +F P +++L+D GG+G S+++
Sbjct: 1138 AILAVAPLFAPGLVR---SDL--EC----DHSFFAPTQVMLFDERAGGSGSSERL 1183
>gi|448413223|ref|ZP_21577060.1| DEAD/DEAH box helicase domain protein [Halosimplex carlsbadense
2-9-1]
gi|445667038|gb|ELZ19686.1| DEAD/DEAH box helicase domain protein [Halosimplex carlsbadense
2-9-1]
Length = 855
Score = 292 bits (748), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 228/776 (29%), Positives = 359/776 (46%), Gaps = 97/776 (12%)
Query: 218 GQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVAT 277
GQ + +I AR+ V D L +L+ +SHQA+++ G+NV VAT
Sbjct: 52 GQAHEIFEIPAREEQTVPAEDVLPPEIARSLEF----DPWSHQADALEVLERGENVCVAT 107
Query: 278 MTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTK-AFDASIDIGVY 336
TSSGK+L Y L + D + +L ++PTKAL++DQ + L + I +GVY
Sbjct: 108 STSSGKTLVYGLHIARQYLEDQETRSLIVYPTKALSRDQEQELNEFFRDTLGLDISVGVY 167
Query: 337 DGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIF 396
DGDT +++ +RD ++ITN L+ + +H ++ SN L+A
Sbjct: 168 DGDTKSEEKSRIRDECNVVITNFVGLNQYLESHH-LWADFHSNCSLVA------------ 214
Query: 397 LFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMEL 456
IDEAH + G G H A ILRR R+ + YG DP +V +TAT NP EH + L
Sbjct: 215 -------IDEAHMWTGLGGMHVAWILRRAQRIIDY-YGGDPQYVLTTATIGNPSEHALAL 266
Query: 457 ANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSY 516
++ D SP + V W+P L TD D+ + + ++ E
Sbjct: 267 TG-EPAAVVDEDSSPRGIRHLVFWDPPMSGDDGL----TDEIDSPALSKRPAT--VEAPE 319
Query: 517 LFAEMVQHGLRCIAFCRSRKLCELVLSYTREIL--EETAPHLVDSICVYRAGYVAEDRRR 574
++A M Q ++ + FC SRKL EL ++ + + E + Y AG+ + RR
Sbjct: 320 VWAHMCQKNVQSLLFCDSRKLTELSVNRAKRFIGDPENRYQGRPDLAAYHAGHGKQSRRG 379
Query: 575 IERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAV 634
E G+L GV+ T+ALE+GI++G +D T+ +G+PGS S WQ+ GRSGR R +L+V
Sbjct: 380 TEHQLKEGQLDGVSTTSALEVGINIGGVDGTVLMGYPGSRQSFWQRIGRSGRGTRDALSV 439
Query: 635 YVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFG 694
+V LDQY +++PE + + E +D N+ V Q L CAA E PL+ E + G
Sbjct: 440 FVPSHSTLDQYILQHPEYVLEEDHESAVVDLDNNPVYLQQLECAAQELPLTRDDAEDFGG 499
Query: 695 SG-LSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEV----- 748
L + + G L SLDS H P IS+ + ++V
Sbjct: 500 EERLERAVEYGRRNGDLEG--SLDSGV----MYAHRDRPQDEISLYSSGGNAFDVRLAGD 553
Query: 749 --IDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKEL--NLSSKIALCQKADLKYF 804
ID Q+ I +A+ +EGA +HQG Y V EL ++ +KA++ Y+
Sbjct: 554 GSIDHQA------IGRDRAYRDYHEGATVLHQGEQYQVVELREDIPQPYISLEKANVNYY 607
Query: 805 TKTRDYTDIHVSGGNNAYATKISKD-QLTKTTAQALACTVTTTWFGFYRLWRGSGIIFD- 862
T+++ G N Y T + ++ T TV+ + + + GSG + +
Sbjct: 608 TQSQ--------GQVNIYDTVVEDSREVGPFTLNWGYGTVSVHYSTYLKREIGSGDVLEL 659
Query: 863 TVELYLPKYSYESQAVWIQVPQSVKAVVEQNFS----------------FRSGLHAASHA 906
E +P +Q W + P ++ + S + G+HA HA
Sbjct: 660 GNETDVPPLEMRTQLCWAETPNDIEQAMLNKHSEYHNPECINLPPRLHGYLGGIHAVEHA 719
Query: 907 LLHVVPIYVRCNFSDLA-------PECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
++ V P+ ++ + D+ PE NP S +F +YD GG G S+ +
Sbjct: 720 MIAVSPLELKVDGGDIGGLATNRLPE--NPEKSGWF-----IYDGIEGGLGFSRSI 768
>gi|427391090|ref|ZP_18885496.1| hypothetical protein HMPREF9233_00999 [Actinobaculum massiliae
ACS-171-V-Col2]
gi|425732428|gb|EKU95238.1| hypothetical protein HMPREF9233_00999 [Actinobaculum massiliae
ACS-171-V-Col2]
Length = 872
Score = 291 bits (745), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 225/797 (28%), Positives = 356/797 (44%), Gaps = 102/797 (12%)
Query: 218 GQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNV--VV 275
GQ+ + R+A E PD + K L GI++ + HQ ++ A+L +V VV
Sbjct: 36 GQIAGSLHLPGREARFGEWPDWVPGKLKQVLADRGIARPWIHQ--TVAANLIHGSVHTVV 93
Query: 276 ATMTSSGKSLCYNLPVLEAL-----------------------SHDLSSSALYMFPTKAL 312
AT T SGKSL +P++ + + L + LY+ PTKAL
Sbjct: 94 ATGTGSGKSLTAWIPMIAEMLEARAEGTLTTVARTPREYSAREAFGLRPTCLYLAPTKAL 153
Query: 313 AQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQ 372
DQL L + A D S+ DGD R + RD A +++NPD +H ++LP H +
Sbjct: 154 VADQLSTLQEILHAVDPSLSAVTVDGDAEPAARSFARDYADFVLSNPDFIHHALLPSHPR 213
Query: 373 FSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHV 432
++R+L LRLI VIDE H+Y+G FG H A + RRL R+ H
Sbjct: 214 WTRVLRGLRLI-------------------VIDEFHSYRGMFGAHVAHVARRLLRIARH- 253
Query: 433 YGSDPSFVFSTATSANPREHCMELAN--LSTLELIQNDGSPCAQKLFVLW---------- 480
YG+ P+ VF +AT A P + +++ DGSP A K +LW
Sbjct: 254 YGARPTVVFLSATVAQPARAAERFLGEAFGPISIVEKDGSPAAAKDVLLWRCRTVERGTD 313
Query: 481 NPTSCLRSVLNKSQTDMDDTRNAANKTSSPIS------------------EVSYLFAEMV 522
P + N+ +D D+ A K + +S E + A +V
Sbjct: 314 EPQALEGPAPNEGASDSDEGIAAPGKGETSLSKEPKRKPLAELPRRSANLEAGEITARIV 373
Query: 523 QHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGG 582
G R + F RSR E V RE L E AP L + YR GY+ E+RR +E G
Sbjct: 374 AAGGRELTFVRSRPGTERVAEIAREYLHELAPDLAGCVAAYRGGYLPEERRALEAQLRSG 433
Query: 583 KLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPL 642
L G+A T+ALELGID+ +D + G+PG+ AS +QQ GR+GR L +++ + PL
Sbjct: 434 TLRGLATTSALELGIDISGLDAVVLCGWPGTHASFFQQLGRAGRGGHDGLGIFIGRDNPL 493
Query: 643 DQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGIT 702
DQY + +P+ + S E D N VL L AA E D + FG ++
Sbjct: 494 DQYLLSHPDAITASSHEANVFDPLNPNVLLPQLCAAAAEL-ALTASDARIFGLSSTALFA 552
Query: 703 TLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEE 762
L +G L P+ + + + +H + +I+ + +L ++
Sbjct: 553 DLTAQGLLKKRPN------GWFWNTSTGVSAHDVVDLRGGGTTVSIIEKNTGSLLGTVDS 606
Query: 763 SKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYF-TKTRDYTDIHVSGGNNA 821
S+A V+ GA+Y+HQG + V+ LS ++AL ++ D+ T R + + +
Sbjct: 607 SRADTTVFPGAIYIHQGVPFEVEA--LSDEVALVKRRDVDELRTYPRQESRVEI------ 658
Query: 822 YATKISKDQLTKTTAQALACTVTTTWFGFYRLWRG-SGIIFDTVELYLPKYSYESQAVWI 880
+ +++ T+ A + ++ Y + R G+ V L +P + W
Sbjct: 659 --IRTLEERQTEIGVWARGEVLVSSRVVGYDVRRARDGMYLGFVPLSMPLRELRTAGTWW 716
Query: 881 QVPQSVKAVVEQNF---SFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPE 937
+ S +A+ E GLH A HA + ++P++ C+ DL H S
Sbjct: 717 TI--SREAIEEAGVLPADLPGGLHGAEHASIAMLPLFATCDRWDLGGLSTEYH-SDTGRA 773
Query: 938 RILLYDRHPGGTGVSKQ 954
++++D PGG+G + +
Sbjct: 774 TVIVHDAIPGGSGCAAR 790
>gi|448329611|ref|ZP_21518909.1| DEAD/DEAH box helicase domain protein [Natrinema versiforme JCM
10478]
gi|445613870|gb|ELY67560.1| DEAD/DEAH box helicase domain protein [Natrinema versiforme JCM
10478]
Length = 848
Score = 289 bits (740), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 230/736 (31%), Positives = 348/736 (47%), Gaps = 81/736 (11%)
Query: 257 YSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQ 316
+SHQA+++ A AG+NV VAT TSSGK+ Y L + + + AL ++PTKAL++DQ
Sbjct: 74 WSHQADALEALSAGENVCVATSTSSGKTYVYGLDIARRFRENPNVRALLVYPTKALSRDQ 133
Query: 317 LRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRI 376
R L + A + +GVYDGDT +++++ +R+ A ++ITN ++ + +H +++
Sbjct: 134 ERELNDLFDALGLEVTVGVYDGDTKRQEKVRIREEANVVITNFAGVNQYLEGHH-RWADF 192
Query: 377 LSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSD 436
+N L+ VIDEAHA+ G G H A ILRR RL YG D
Sbjct: 193 HANCDLL-------------------VIDEAHAWTGISGMHAAWILRRARRLIDW-YGGD 232
Query: 437 PSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTD 496
P +V +TAT NP EH L +I DGSP ++ V W+P + + D
Sbjct: 233 PQYVLTTATIGNPAEHAEALTG-EPATVIDEDGSPSGRRHLVFWDPPADGDGSGSGGGAD 291
Query: 497 MDDTRNAANKTSSP-----ISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEE 551
D + +P E ++A G+ + FC SRK EL + RE LE
Sbjct: 292 TGDGDRGGDSAWTPSKRPATVEAPEVWAHCCDRGVPSLLFCDSRKQTELAVGRAREYLE- 350
Query: 552 TAPHLVD----SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLH 607
P L + Y AG+ + RR E G L GVA T+ALE+GIDVG ID T+
Sbjct: 351 -IPSLPSRGGTELAAYNAGHGKQSRRGTENRLKSGDLDGVATTSALEVGIDVGGIDGTVL 409
Query: 608 LGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQN 667
LG+PGS S WQ+ GRSGR ER +L+V+V LDQY +++PE L + E +D +N
Sbjct: 410 LGYPGSRQSFWQRIGRSGRDEREALSVFVPSHATLDQYILRHPEYLLEEEPESAVVDLEN 469
Query: 668 HKVLEQHLVCAALEHPLSLIYDEKYFG-SGLSSGITTLKNRGYLSSDPSLDSSAKIFEYI 726
+ V QHL CAA E PL +++ G L + + G L S A Y
Sbjct: 470 NPVYLQHLQCAAQELPLRREDADRFGGLDRLERAVEYGRRTGDLEG-----SLAGGVTY- 523
Query: 727 GHEKMPSHTISIRAIESERYEVIDMQSNEVLEE--IEESKAFFQVYEGAVYMHQGHTYLV 784
H P IS+ A +EV + E ++ I ++A+ +EGA +++G Y V
Sbjct: 524 AHRDRPQDEISLYASGGNAFEV-RLAGEESIDHQPIGRARAYRDYHEGATVLYRGDQYEV 582
Query: 785 KEL--NLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQ-LTKTTAQALAC 841
+L + + D+ Y+T+++ T I Y T++ + + +
Sbjct: 583 VDLREDRPQPYVELEAVDVDYYTQSQRQTTI--------YDTEVRESRDVGPFRLNWGYG 634
Query: 842 TVTTTWFGFYRLWRGSGIIFDT-VELYLPKYSYESQAVWIQVPQSVKAVVEQNFS----- 895
TVT F + GSG + +E +P +Q W +VP V+ V S
Sbjct: 635 TVTVHHDTFMKREIGSGDVRAVGLETGVPPLEMRTQLCWAEVPHDVERAVTAAHSDYHND 694
Query: 896 -----------FRSGLHAASHALLHVVPIYVRCNFSDLAPECPN-----PHDSRYFPERI 939
+ G+HA HA++ V P+ + + +DL N P S +F
Sbjct: 695 ECEDLPPRLHGYLGGIHAVEHAMIAVAPLELTVDAADLGGLATNRLPDTPGTSGWF---- 750
Query: 940 LLYDRHPGGTGVSKQV 955
+YD GG G S+++
Sbjct: 751 -IYDGVEGGLGFSRRI 765
>gi|448373979|ref|ZP_21557864.1| hypothetical protein C479_01361 [Halovivax asiaticus JCM 14624]
gi|445660656|gb|ELZ13451.1| hypothetical protein C479_01361 [Halovivax asiaticus JCM 14624]
Length = 904
Score = 288 bits (738), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 227/764 (29%), Positives = 357/764 (46%), Gaps = 100/764 (13%)
Query: 215 GSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVV 274
G+ G VE + AR+A + D L ++AL S LY+HQA++++A +NV
Sbjct: 32 GAPGDATVVE-VPAREATTIPARDVL----QAALASPLDHDLYAHQADALVALARDENVC 86
Query: 275 VATMTSSGKSLCYNLPVLEA-LSHD------------LSSSALYMFPTKALAQDQLRALL 321
V T T+SGK+L Y L + L+ D S+AL ++PTKAL++DQ R L
Sbjct: 87 VTTSTASGKTLVYGLQIARHYLAGDPGPYESREEHSQRGSTALVVYPTKALSRDQERELN 146
Query: 322 AMTKAFDASIDIGVYDGDTTQKD-RMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNL 380
+ + + + VYDGDT + R +R+ A +++TN + G + + +
Sbjct: 147 DLYETLGLDVTVRVYDGDTDHGEARREIRETADVIVTN----------FAGVNTYLHDHD 196
Query: 381 RLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFV 440
R +F + VVIDE+H Y G G H A +RRL R+ ++ YG+DP FV
Sbjct: 197 RWASF----------YGACDLVVIDESHTYTGVHGMHVAWTIRRLKRVLTY-YGADPGFV 245
Query: 441 FSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQT----- 495
++AT NP H L + + ++ DGSP + VLWNP R+ + Q+
Sbjct: 246 LTSATIGNPAAHSEALID-EPVTVVDEDGSPRGPRELVLWNPP---RASADGDQSVERDD 301
Query: 496 ---DMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEE- 551
+D A++ + + E LF+ + HG + + F SRKL EL + E
Sbjct: 302 DIDSVDADEERADRLPASV-EAPRLFSHLTYHGAQTLLFTPSRKLAELSIERAERGRERW 360
Query: 552 ----TAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLH 607
TAP + Y AG+ R E+ G L GVA+TNALELG+++G +D T+
Sbjct: 361 SGYYTAPDRGSDLRSYHAGHARNSRHATEQGLKTGSLDGVASTNALELGLNIGAMDATVQ 420
Query: 608 LGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQN 667
LG+PG + WQQ GR+GR +L+V VA LDQY + P L +S +E +D +N
Sbjct: 421 LGYPGQRQAFWQQIGRAGRGTERALSVLVADHRTLDQYVVSNPSYLTESDVEDAVVDTEN 480
Query: 668 HKVLEQHLVCAALEHPLSLIYDEKYFG-SGLSSGITTLKNRGYLSSDPSLDSSAKIFEYI 726
V H+ CAA E L E + L S + + G LS L++ Y
Sbjct: 481 DAVFATHVRCAADELSLDETDAENFADRERLESAVELWRRAGDLSG--RLETGVS---YT 535
Query: 727 GHEKMPSHTISIRAIESERYEV-----IDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHT 781
G + P ++S+ A + YEV +D Q + +E + + F +EGAV +H+G
Sbjct: 536 GPPR-PQSSVSMYATAGQEYEVRLADGVDAQHDPEMEPLARERVFRDFHEGAVRLHEGRQ 594
Query: 782 YLVKEL--NLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQAL 839
Y V ++ + + Q D+ Y+T+T ++ V ++ + +I L T L
Sbjct: 595 YQVTDVVHDGPQPHVVIQPVDVDYYTRTN--REVTVIDADSKRSREIGDFVLHHGTGTVL 652
Query: 840 ACTVTTTWFGFYRLWR--GSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFS-- 895
+++G + R G V LP E+Q W++VP +V+A + +S
Sbjct: 653 ------SYYGSFDQVRIEGGQKRRQNVPTGLPALPMETQLCWLEVPPAVEARLVDRYSDF 706
Query: 896 ----------------FRSGLHAASHALLHVVPIYVRCNFSDLA 923
+ GLHAA HA + V P+ + + DL
Sbjct: 707 TVPELDGEFGEGVHVGYAGGLHAAEHATIGVAPLELMVDKRDLG 750
>gi|149924545|ref|ZP_01912903.1| DEAD/DEAH box helicase-like protein [Plesiocystis pacifica SIR-1]
gi|149814598|gb|EDM74180.1| DEAD/DEAH box helicase-like protein [Plesiocystis pacifica SIR-1]
Length = 909
Score = 288 bits (737), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 247/861 (28%), Positives = 381/861 (44%), Gaps = 166/861 (19%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATM 278
++V + AR A + PD + + S GI++ +SHQA ++ G+++V+AT
Sbjct: 15 ELVALRRSPARPAQFSDWPDWVDARVRERFASKGIARPWSHQARAVELLGQGRDLVLATA 74
Query: 279 TSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDG 338
T+SGKSLCY PV++A+ D S AL++FPTKALA+DQ+ A+ A+ ++ +G YDG
Sbjct: 75 TASGKSLCYQAPVMQAVLEDPRSRALFLFPTKALARDQVEAMRALVG---EAVGVGTYDG 131
Query: 339 DTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLF 398
DT R R A ++ TNPDMLH +LP+H +++ +L+ L
Sbjct: 132 DTPPDQRRAARARAHVIATNPDMLHRGLLPHHDRWAPVLAGL------------------ 173
Query: 399 IRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELAN 458
R+VVIDE H Y+G FG H A +LRRL R CS +GS P + +AT ANP E L
Sbjct: 174 -RYVVIDELHTYRGVFGSHVANVLRRLWRACS-FHGSRPQIIACSATIANPVELASTLCA 231
Query: 459 LSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLF 518
S L+ +P + F ++NP +V++ D A+ +
Sbjct: 232 RSNFALVDESTAPAGARTFAVFNP-----AVVDPLIGVRRDYLKASRAALA--------- 277
Query: 519 AEMVQHGLRCIAFCRSRKLCELVLSYTRE------------ILEETAP--HLVDSICVYR 564
E+ + +AFCR+RK EL+ Y RE + E TA LV S V R
Sbjct: 278 -ELRAAEVTTLAFCRTRKAVELLTRYLREDEAGVREGGRSPMAESTASPGGLVGSASVPR 336
Query: 565 ----------------------------------------AGYVAEDRRRIERDFFGGKL 584
AG +A RR+I R + GG L
Sbjct: 337 AARGVGPWARMQDKPKPGSKGSKGGRPRFQREAELSGPVDAGAMARARRKI-RGYRGGYL 395
Query: 585 CG----------------VAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRE 628
V ATNALELG+D+G +D + G+PG+ A+ WQ++GR+GRR+
Sbjct: 396 PEHRREIEDALRRGEVEVVTATNALELGMDIGGLDAVVLAGYPGTRAATWQRSGRAGRRQ 455
Query: 629 RPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIY 688
P+L V + PLDQ+ PE LF P E +D N ++L HL CAA E P
Sbjct: 456 APALTVMILSSRPLDQFIAADPEFLFAEPPEHARVDPLNPEILVPHLRCAAYELPFGFPL 515
Query: 689 DEKYF---GSG-------------------LSSGITTLKNRGYLSSDPSLDSSAKIFEYI 726
DE G G L+S +T L + G L + +D + Y
Sbjct: 516 DEAVADRSGEGEGAEDPSWWRSWGDLPELDLASALTYLSDHGALLRE--VDEAGCPRFYA 573
Query: 727 GHEKMPSHTISIRAIESERYEVID-----MQSNEVLEEIEESKAFFQVYEGAVYMHQGHT 781
P+ + +R E + VI+ + +L E++ ++ GA+Y +G
Sbjct: 574 IGSAFPADGVDLRGSIEENFAVIEERPGTAEHGRILAEVDFEDGPLYLHPGAIYPLEGAI 633
Query: 782 YLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALAC 841
Y V+ L+ + A ++A + Y+T+ + + G+ A + + L++ +
Sbjct: 634 YEVRRLDWDERKAYVREATVSYYTEAICKLKVRMLEGSK--APPVHERALSEVVSGTGYA 691
Query: 842 TVTTTWFGFYRL-WRG-SGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSG 899
V GF +L +R I F V LP + A + +P ++ A + + +
Sbjct: 692 HVVRAVPGFKKLRFRTHENIGFGPVR--LPDLELHTVAAYWSMPDALMAELADPYRRANA 749
Query: 900 LHAASHALLHVVPIYVRCNFSDL----APECPNPHD-SRYFP-----------------E 937
AA+HA+ H+ + + C SDL P P + + P
Sbjct: 750 ALAAAHAIQHIAAMVLMCEPSDLRHAVTSGPPGPEGVAAWAPVGKGQPSAEARLAASGRP 809
Query: 938 RILLYDRHPGGTGVSKQVTDM 958
I LYD PGG G++ +V M
Sbjct: 810 TIYLYDDLPGGAGLATRVHAM 830
>gi|225850030|ref|YP_002730264.1| DEAD/DEAH box helicase [Persephonella marina EX-H1]
gi|225644812|gb|ACO02998.1| ATP-dependent rna helicase, dead/deah box family [Persephonella
marina EX-H1]
Length = 816
Score = 288 bits (736), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 187/573 (32%), Positives = 282/573 (49%), Gaps = 77/573 (13%)
Query: 242 DNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSS 301
+ KS L+ I KLYSHQ E + A GKN+VV T T+SGKS Y L +LE L + +
Sbjct: 32 EKLKSFLERKDI-KLYSHQVEGLNAVKEGKNIVVTTPTASGKSFIYILSILERLKENPET 90
Query: 302 SALYMFPTKALAQDQLRAL--LAMTKAFDASIDIGVYDGDTTQKDRMWLR-DNARLLITN 358
+ +FP KALA+DQ + L + DA +D VYDGDT ++ R ++ D LIT
Sbjct: 91 KGIIIFPLKALARDQYGKIMDLILETGIDARVD--VYDGDTDREKRQEIKKDPPTFLITT 148
Query: 359 PDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHT 418
PDML+ ILPYH +S NL F+V+DE HAY+G G H
Sbjct: 149 PDMLNAGILPYHTGWSSFFENLD-------------------FIVLDEIHAYRGILGSHI 189
Query: 419 ALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFV 478
A I+RRL R+ + P F+ ++AT NP +L +E I G+P ++
Sbjct: 190 ANIVRRLKRITGYYRTKKPVFIMNSATVHNPSSFASKLIGEEVVE-ISRSGAPSPEREIQ 248
Query: 479 LWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLC 538
++ LRS SE + L A V + I F SRK
Sbjct: 249 IFR---NLRS-----------------------SETAELIANTVIEDISSIVFVDSRKEA 282
Query: 539 ELVLSYTREIL-EETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGI 597
E++ ++IL ++ LVD + YR+GY +RR IE + V +T+ALE+GI
Sbjct: 283 EILSLRVKDILVKKGRDDLVDKVSPYRSGYTPAERREIEFKLLTKNILAVISTSALEMGI 342
Query: 598 DVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSP 657
D+G +D + +G+PG++A LWQ+ GR+GRR+R + + + LDQYF+K PE+LF
Sbjct: 343 DIGDLDNCILVGYPGTLAQLWQRFGRAGRRDRKAYNILIPKRNALDQYFVKNPEELFYRK 402
Query: 658 IECCHIDAQNHKVLEQHLVCAALEHPL---SLIYDEKYFGSGL-SSGITTLKNRGYLSSD 713
+E I+ +N +L++HL A E P+ L +EK L GI N +S
Sbjct: 403 MEEPVINPENRYILKKHLPVMASEIPIKLDELSENEKEVARELYKEGIIRFSNNKLYASR 462
Query: 714 PSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGA 773
SIR+ E + +++ S V+ +I E ++ + GA
Sbjct: 463 -------------------QKPFSIRS-AGESFRIVETVSGRVIGDISEDIVLYEAHPGA 502
Query: 774 VYMHQGHTYLVKELNLSSKIALCQKADLKYFTK 806
VY+H G Y+V+ L++ K+ +++ Y T+
Sbjct: 503 VYLHNGEKYIVEHLDMEGKVVYVVHSNISYITE 535
>gi|433638436|ref|YP_007284196.1| helicase family protein with metal-binding cysteine cluster
[Halovivax ruber XH-70]
gi|433290240|gb|AGB16063.1| helicase family protein with metal-binding cysteine cluster
[Halovivax ruber XH-70]
Length = 906
Score = 285 bits (730), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 226/764 (29%), Positives = 346/764 (45%), Gaps = 98/764 (12%)
Query: 215 GSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVV 274
G+ G V D+ AR+A + D L + AL LY+HQA+++ A +NV
Sbjct: 32 GTPGDAT-VVDVPAREATTIRAGDVL----QPALAGPLDHDLYAHQADALEALARDENVC 86
Query: 275 VATMTSSGKSLCYNLPVLEALSHDLS-------------SSALYMFPTKALAQDQLRALL 321
V T T+SGK+L Y L + S S+AL ++PTKAL++DQ R L
Sbjct: 87 VTTSTASGKTLVYGLQIARHYQAGDSGPDASREKHSQRGSTALVVYPTKALSRDQERELN 146
Query: 322 AMTKAFDASIDIGVYDGDTTQKD-RMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNL 380
+ +A + + VYDGDT + R +R+ A +++TN + G + + +
Sbjct: 147 DLYEALGLDVTVRVYDGDTEHGETRREIRETADVIVTN----------FAGVNTYLHDHD 196
Query: 381 RLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFV 440
R +F + VVIDE+H Y G G H A +RRL R+ ++ YG DP FV
Sbjct: 197 RWASF----------YGACDLVVIDESHTYTGVHGMHVAWTIRRLKRVLTY-YGVDPGFV 245
Query: 441 FSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDM--- 497
++AT NP H L + + ++ DGSP + VLWNP S ++ D
Sbjct: 246 LTSATIGNPAAHSEALID-EPVTVVDEDGSPRGPRELVLWNPPRA--STADEEDGDAFHP 302
Query: 498 ----DDTRNAANKTSSPIS-EVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEE- 551
D + A P S E LF+ + HG + + F SRKL EL + E
Sbjct: 303 DPDETDDPDGARADRLPASVEAPRLFSHLTYHGAQTLLFTPSRKLAELSIERAERGRERW 362
Query: 552 ----TAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLH 607
P + Y AG+ R E+ G L GVA+TNALELG+++G +D T+
Sbjct: 363 SGYYAEPERASDLRSYHAGHARNSRHATEQGLKRGSLDGVASTNALELGLNIGAMDATVQ 422
Query: 608 LGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQN 667
LG+PG + WQQ GR+GR +L+V VA LDQY + P L +S +E +D +N
Sbjct: 423 LGYPGQRQAFWQQIGRAGRGTERALSVLVADHRTLDQYVVSNPSYLTESDVEDAVVDTEN 482
Query: 668 HKVLEQHLVCAALEHPLSLIYDEKYFG-SGLSSGITTLKNRGYLSSDPSLDSSAKIFEYI 726
V H+ CAA E L E + L S + + G+LS L++ Y
Sbjct: 483 DAVFATHVRCAADELALDETDAENFADRERLESAVELWRRAGHLSG--QLETGVS---YT 537
Query: 727 GHEKMPSHTISIRAIESERYEV-----IDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHT 781
G + P ++S+ A + YEV +D + + +E + + F +EGAV +H+GH
Sbjct: 538 GPPR-PQSSVSMYATAGQEYEVRLADGVDARHDPEMEPLARERVFRDFHEGAVRLHEGHQ 596
Query: 782 YLVKEL--NLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQAL 839
Y V ++ + Q D+ Y+T+T ++ V + + +I L T L
Sbjct: 597 YEVTDVVHEGPKPHVVIQPVDVDYYTRTN--REVTVLDAESERSREIGDFVLHHGTGTVL 654
Query: 840 ACTVTTTWFGFYRLWR--GSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFS-- 895
+++G + R G V LP E+Q W++VP V+A + +S
Sbjct: 655 ------SYYGSFDQVRIEGGQKRRQNVPTGLPALPMETQLCWLEVPADVEARLVDRYSDF 708
Query: 896 ----------------FRSGLHAASHALLHVVPIYVRCNFSDLA 923
+ GLHAA HA + V P+ + + DL
Sbjct: 709 AVPELDGEFGEGVHVGYAGGLHAAEHATIGVAPLELMVDKRDLG 752
>gi|336254496|ref|YP_004597603.1| hypothetical protein Halxa_3110 [Halopiger xanaduensis SH-6]
gi|335338485|gb|AEH37724.1| Protein of unknown function DUF1998 [Halopiger xanaduensis SH-6]
Length = 899
Score = 285 bits (730), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 237/761 (31%), Positives = 351/761 (46%), Gaps = 107/761 (14%)
Query: 221 VHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTS 280
V V ++ R A V D L L++ LYSHQA+++ A +NV VAT TS
Sbjct: 33 VSVLELPGRDASTVPNEDVLRPELAGPLEN----DLYSHQADALEALAREENVCVATSTS 88
Query: 281 SGKSLCYNLPV----LEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVY 336
SGK+ Y L + LEA + S+A ++PTKAL++DQ R L + I + VY
Sbjct: 89 SGKTRIYALQIARNYLEAQARGEDSTAYVLYPTKALSRDQERELNDLFDDLGLEISVRVY 148
Query: 337 DGDTTQ-KDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLI 395
DGDT + + R +R+ A ++I+N ++ + L H +++R LS L
Sbjct: 149 DGDTERGQTRRQIREEADVIISNFAGVN-TYLHDHDRWARFLSACDL------------- 194
Query: 396 FLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCME 455
VVIDE+H Y G G H A I+RRL R+ + Y SDP FV ++AT NP EH
Sbjct: 195 ------VVIDESHTYTGVHGMHVAWIVRRLKRVLEY-YASDPQFVLTSATIGNPGEHSEA 247
Query: 456 LANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPIS--- 512
L + + ++ DGSP + VLWNP +++ D DD R+ N+
Sbjct: 248 LID-EPVTVVDEDGSPTGPRDLVLWNPPP-------RAREDGDDERDEWNEAGEETEVTE 299
Query: 513 ---------------EVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEE-----T 552
E L + + H + + F SRKL EL + + + T
Sbjct: 300 DGPADAIVERVPATVEAPRLLSHLTYHDAQTLLFSPSRKLAELSVKRASKHRHDNRRYYT 359
Query: 553 APHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPG 612
P +I Y AG+ + R E G L GVA+TNALELGI++G +D T+ LG+PG
Sbjct: 360 NPDRGSAIEPYHAGHSRKKRHGTEHQLKTGVLDGVASTNALELGINIGEMDATVQLGYPG 419
Query: 613 SIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLE 672
S WQQ GR+GR + +L+V VA LDQY + P+ L ++ +E +D N V
Sbjct: 420 QRQSFWQQIGRAGRGTKRALSVLVAEHRTLDQYVVNNPDYLLENDVEDAVVDVDNDAVFA 479
Query: 673 QHLVCAALEHPLSLIYDEKYFG-----SGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIG 727
QHL CAA E L DE G L I + G L SL++ Y+G
Sbjct: 480 QHLRCAADE----LAIDESDIGRLADRERLERAIEMWRRAGQLQG--SLETGVS---YVG 530
Query: 728 HEKMPSHTISIRAIESERYEV-----IDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTY 782
+ P +IS+ A E YEV +D + + +E + E + +EGAV +HQG Y
Sbjct: 531 PPR-PQQSISLYATTGEEYEVELADGVDEEYDPQMEPLAEERVLRDFHEGAVRLHQGQQY 589
Query: 783 LVKEL--NLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALA 840
V ++ + + D+ Y+T+TR TD+ V + + +I L + L
Sbjct: 590 EVVDVEHDAPRPSVTVRPTDVDYYTRTR--TDVTVLDAVSEESREIGDFTLHFGRGRVLV 647
Query: 841 CTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVK-AVVEQ------- 892
T + G + P S E+Q W++VPQ V+ A+VE+
Sbjct: 648 YHGTYDKVAVH----GGKKKEQAIPTDNPPLSMETQLCWLEVPQYVEDALVEKYREFEVP 703
Query: 893 ----------NFSFRSGLHAASHALLHVVPIYVRCNFSDLA 923
+ + GLHAA HA + V P+ + + DL
Sbjct: 704 EMDGDLAQTAHLGYAGGLHAAEHATIGVAPLELMVDKRDLG 744
>gi|448739995|ref|ZP_21721983.1| ATP-dependent helicase [Halococcus thailandensis JCM 13552]
gi|445797741|gb|EMA48193.1| ATP-dependent helicase [Halococcus thailandensis JCM 13552]
Length = 996
Score = 284 bits (727), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 217/785 (27%), Positives = 343/785 (43%), Gaps = 119/785 (15%)
Query: 247 ALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLE-ALSHDLSSSALY 305
AL+ GI + Y HQ +I A G+N V+AT T+SGKSL Y +P +E AL HD LY
Sbjct: 20 ALERRGIDQFYQHQTAAIDAIRDGENAVIATPTASGKSLIYTVPAVERALDHD--GRTLY 77
Query: 306 MFPTKALAQDQLRALLAMTK--AFDASIDIGVYDGDTTQKDRMWLR-DNARLLITNPDML 362
+ P +AL DQ +T A++D+G Y G +Q ++ +R D +++ PD+L
Sbjct: 78 IAPQRALINDQEANFTDLTDDLGLGATVDVGQYTGQLSQTEKRAVRGDQPHIVLMTPDLL 137
Query: 363 HMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALIL 422
H +LP+ + F + +VIDE H Y+G FG AL++
Sbjct: 138 HYGVLPHDHLWE-------------------WFFRQLDTIVIDEVHEYRGIFGSQIALVM 178
Query: 423 RRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLST--LELIQNDGSPCAQKLFVLW 480
RRL R+C Y SDP F+ +AT NP EH + ST +I D S ++ W
Sbjct: 179 RRLTRMCER-YNSDPQFICCSATIGNPAEHAGNVTGQSTDSFSVIDEDTSTTGATHWLFW 237
Query: 481 NPTSCLRSVLNKSQTD-------------------------------------------- 496
NP + +S T
Sbjct: 238 NPPPVKDNSQAESDTQHPAPSELEPEPQSPTMTSDGGEALPAPAPPSTDIDTSSDVQSDP 297
Query: 497 -MDDTRNAANKTS----------SPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYT 545
+DD +TS S +E LF ++V G + + F R+R+ E ++
Sbjct: 298 TVDDGGEGETETSVEPESGGERKSNHAEAVRLFCDLVTRGYQTLVFTRTRQGAERCAEWS 357
Query: 546 REILEETAPH-LVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDV 604
L + H ++I Y+A + R IE G + GV +T+ALELG+DVG +DV
Sbjct: 358 AAELHKRGEHQAANAITAYQAALKQDRREEIEDGLHDGSIPGVWSTSALELGVDVGGLDV 417
Query: 605 TLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHID 664
+ G+PG+ Q+AGR+GR SL V LDQY M +P+ F+ E ++
Sbjct: 418 VILNGYPGTRMQTHQRAGRAGRGRDASLVTLVGGRDQLDQYLMGHPDVFFEGDPEEAAVN 477
Query: 665 AQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFE 724
N +++ H++ AA E LS DE++FG +T L++ G L + + +
Sbjct: 478 PSNDQLMPDHVLSAARESWLSPA-DEQHFGEKFPEFVTQLESEGLLERRNT--NKGVRWT 534
Query: 725 YIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLV 784
Y G + P H +SIRAI ++ D + L + A V+ A+Y HQG Y V
Sbjct: 535 YAG-DGSPQHEMSIRAIHDREIQIRDRLNETDLASLSYDDALRDVHPNAIYHHQGEKYEV 593
Query: 785 KELNLSSKIALCQKADLKYFTKTRDYTDIHVS------------GGNNAYATKISKDQLT 832
+L+L A + +L Y+T+ I V+ G +A ++Q+T
Sbjct: 594 VDLDLERDTAFLESTELSYYTQALTDKAISVNEVLNETTLATHPGVTVGFADIEFREQVT 653
Query: 833 KTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVP----QSVKA 888
K L CT G + LP ++A++ +P Q+++A
Sbjct: 654 KY----LRCTQGNDDNGEPI----------PLPEPLPPTELRTRALYFTIPPAIKQNLRA 699
Query: 889 VVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGG 948
+ + F +HA HA++ + P+ C+ D+ P + I +YD +PGG
Sbjct: 700 ESDVDDGFEGAIHAVEHAMISLFPLEFLCDRRDIG-GLSTPLHPQTAKSTIFIYDGYPGG 758
Query: 949 TGVSK 953
G+++
Sbjct: 759 VGLAR 763
>gi|326433050|gb|EGD78620.1| hypothetical protein PTSG_01598 [Salpingoeca sp. ATCC 50818]
Length = 1255
Score = 284 bits (727), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 165/483 (34%), Positives = 258/483 (53%), Gaps = 54/483 (11%)
Query: 508 SSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGY 567
SS I + + + + +V+ +R +AF + RK+ ELVL YTR L+ TAP LV + YRAGY
Sbjct: 693 SSAILQAALILSALVKQHVRTLAFAKVRKVTELVLKYTRHDLKHTAPQLVARVKSYRAGY 752
Query: 568 VAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRR 627
E+RR IER F GK+ G ATNALELG+D+G +D T+ LGFPGSIAS+WQQAGRSGR
Sbjct: 753 TKEERRAIERALFAGKILGTTATNALELGVDIGSLDATILLGFPGSIASMWQQAGRSGRG 812
Query: 628 ERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALE------ 681
+L + + F PLDQY+ ++P +LF E D +N VL +HLVCAA E
Sbjct: 813 THDALTILILFNSPLDQYYHRHPTQLFARKYEAAVCDPRNPYVLREHLVCAAAELPLALL 872
Query: 682 --------------------------------HPLSLIYDEKYFGSGLSSGITTLKNRGY 709
+ D FG + + TL++
Sbjct: 873 PTHIDTTTRLLGADVVGEEANFMDRCTLDEYTRAFPAMEDLLLFGGTAPALVHTLED--- 929
Query: 710 LSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQV 769
SD L + F + PS T+S+R+++ E + V ++ + ++E+ A F++
Sbjct: 930 --SDIVLQTREG-FTIRAMDARPSLTVSLRSVDQEAFAVYEIPGMKKIDEVGPRHAIFEL 986
Query: 770 YEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKD 829
YEGA+++HQGHT+L+ + +A + + YFT+ RD+++I V + +D
Sbjct: 987 YEGAIFLHQGHTFLITHYDRDELVAHAKPVKVDYFTRQRDFSNIDV-------INVLKRD 1039
Query: 830 QLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVK-A 888
+ A + V+ + +G++++ + F+TV L L + Y+S+ WI + SVK
Sbjct: 1040 --PERNAFWGSVQVSVSVYGYHKIRERTLEFFETVPLVLDPWEYKSRGCWIDIHPSVKYR 1097
Query: 889 VVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGG 948
++ + + +HAA+H + + VP+YV C+ D+ E +P R P R++LYD PGG
Sbjct: 1098 LLAEGLDVTASIHAANHVIKNSVPVYVLCDLGDIDCEHSSPLQLRARPLRLVLYDTKPGG 1157
Query: 949 TGV 951
GV
Sbjct: 1158 IGV 1160
Score = 222 bits (565), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 125/322 (38%), Positives = 186/322 (57%), Gaps = 27/322 (8%)
Query: 180 RSQSSTSSSHSFQRRCSDKSQLLPLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDA 239
++ S ++++ R + +Q P E+++HL + ++G +HVE + AR V E+
Sbjct: 234 KTASVQYTNYTGDYRATPPAQFDPKEILDHLLRLPLAKGHSLHVETLPARAPVFGELERP 293
Query: 240 LLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDL 299
L + L GI +L+SHQAE + A+ G +V+++T TSSGKSL Y+LP +EAL D
Sbjct: 294 LPSPLQHTLADLGIQRLFSHQAEGVNAARDGAHVMISTATSSGKSLVYHLPTMEALLSDP 353
Query: 300 SSS-ALYMFPTKALAQDQLRALLAMTKA--FDASIDIGVYDGDTTQKDRMWLRDNARLLI 356
++ ALY+FPTKALAQDQLR+L A ++ D DT + R ++ A +++
Sbjct: 354 HNTVALYIFPTKALAQDQLRSLREFVGAGWLGDAVRADCLDADTPARAREDVKSAANIIL 413
Query: 357 TNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGC 416
TNPD+LH ++LP H + RI +L RFVVIDEAH Y+GAFG
Sbjct: 414 TNPDLLHATLLPRHRDWHRIFRSL-------------------RFVVIDEAHMYRGAFGS 454
Query: 417 HTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL-----STLELIQNDGSP 471
H +L++RRL R+C H + F+ STAT ANPR+H +L L S + ++ NDGSP
Sbjct: 455 HVSLVIRRLLRICRHYGNTSVQFICSTATLANPRQHFGQLIPLIYPHRSRVCVVDNDGSP 514
Query: 472 CAQKLFVLWNPTSCLRSVLNKS 493
++FVLWNP S ++ S
Sbjct: 515 SGSRVFVLWNPVRNDNSTVDGS 536
>gi|357037937|ref|ZP_09099736.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum gibsoniae
DSM 7213]
gi|355360493|gb|EHG08251.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum gibsoniae
DSM 7213]
Length = 892
Score = 283 bits (725), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 222/761 (29%), Positives = 345/761 (45%), Gaps = 91/761 (11%)
Query: 211 RKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAG 270
++GI S VH+ I ++A P + +L GI +LY+HQA++I + G
Sbjct: 7 QRGINS----VHI--IPPKEAQYAPFPPGVAKAVVRSLADQGIGQLYAHQAQAIGHIMEG 60
Query: 271 KNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL--LAMTKAFD 328
+NV++ T TSSGKSL Y +P+ L + ALY+ PTKAL Q+Q++ + +A+T +
Sbjct: 61 RNVIITTGTSSGKSLVYTIPMFSELISHPQARALYITPTKALGQNQMKTMQDIAVTLEWP 120
Query: 329 ASIDI-GVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSL 387
+ + DGDT R + ++ +LIT PD +H +LP H + +L+
Sbjct: 121 QGVPVMATCDGDTPFNQRRDVINSTGVLITTPDFIHAFLLPRHLDWPGFWGSLK------ 174
Query: 388 VTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSA 447
++VIDEAH KG GCH + RRL R+C + YG+ P F+ TAT A
Sbjct: 175 -------------YIVIDEAHTLKGVMGCHCLQVFRRLRRVCDY-YGARPVFILCTATIA 220
Query: 448 NPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKT 507
NP E +L L ++ + S +K V + P + DD R T
Sbjct: 221 NPGEFATKLVGLD-FAVVTVETSASGEKTVVFYEPPT----------YKTDDGRTKRRLT 269
Query: 508 SSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGY 567
E + V+ G R I F RSR++ E ++ E P + +I Y+ Y
Sbjct: 270 HF---EAARAVGRYVESGRRTIMFGRSRRIVE----SAYRVIRENFPGVAGAITPYKGTY 322
Query: 568 VAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRR 627
V + RR IE+ F G L GV +TNALELGI+VG +D + GF GSI+S WQQAGR GR+
Sbjct: 323 VPQMRRDIEKKLFNGNLKGVISTNALELGINVGELDTCILAGFAGSISSTWQQAGRVGRK 382
Query: 628 ERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLS-- 685
+ SL V +A E PLD Y +++P+ F P E + ++ + L HL AA E PLS
Sbjct: 383 GQKSLIVLMANEDPLDLYIVRHPQYFFGQPFEKA-VVSEKMQFLVDHLPLAAKELPLSKE 441
Query: 686 --LIYDEKYFGSGLSSGITTLKNRGY--LSSDPSLDSSAKIFEYIGHEKMPSHTISIRAI 741
+D + + LK+R L+ P A E+ S+R
Sbjct: 442 DAAYWDRDTYYEAVK---LLLKHRRLKPLTDQPRTYGPAGQLEF----------FSLRG- 487
Query: 742 ESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADL 801
ES+ Y I Q + LEE Y GA+ YLV+ ++ +K Q DL
Sbjct: 488 ESDNYSTISPQGHR-LEEYNYDDVIRDAYPGAILPVYNRVYLVENVDHGAKS--IQLRDL 544
Query: 802 K-----YFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRG 856
+ T+ + I V + ++ ++ L + + +W
Sbjct: 545 PAQFKDFITRPNIQSRIAVEK-----VERTHREGNVVVSSGVLNIHKSLVSYNLINVWDK 599
Query: 857 SGIIFDTVEL--YLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIY 914
T+E+ L + + +W+ + ++Q + + HA H L ++P+
Sbjct: 600 QKESQKTIEVGQKLKPIDFPTVGIWLDIDLQ---GLDQEVKYGAA-HALKHLLQIIIPLE 655
Query: 915 VRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
V C DL D +I +YD + GG G+++ V
Sbjct: 656 VMCERHDLGASLQVHGDQ----AQIFIYDNYAGGVGLAESV 692
>gi|448311640|ref|ZP_21501399.1| DEAD/DEAH box helicase domain protein [Natronolimnobius
innermongolicus JCM 12255]
gi|445604369|gb|ELY58318.1| DEAD/DEAH box helicase domain protein [Natronolimnobius
innermongolicus JCM 12255]
Length = 885
Score = 283 bits (725), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 231/798 (28%), Positives = 354/798 (44%), Gaps = 111/798 (13%)
Query: 218 GQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVAT 277
GQ+ DI AR+ V D L L+ +SHQAE++ G NV VAT
Sbjct: 52 GQVHENFDIPAREEETVPAGDVLPPKIARNLEF----DPWSHQAEALQVLDRGDNVCVAT 107
Query: 278 MTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLA-MTKAFDASIDIGVY 336
TSSGK+L Y L + D + +L ++PTKAL++DQ + L + I +GVY
Sbjct: 108 STSSGKTLVYGLHIARQYLEDPETRSLIVYPTKALSRDQEQELNEFLRNTLGLEISVGVY 167
Query: 337 DGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIF 396
DGDT +++ +RD ++ITN L+ + +H ++ SN L
Sbjct: 168 DGDTKSEEKSRIRDECNVVITNFVGLNQYLESHH-LWADFHSNCSL-------------- 212
Query: 397 LFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMEL 456
VVIDEAH + G G H A ILRR R+ + YG DP +V +TAT NP EH + L
Sbjct: 213 -----VVIDEAHMWTGLGGMHVAWILRRAQRIIDY-YGGDPQYVLTTATIGNPTEHALAL 266
Query: 457 ANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSY 516
++ DGSP + V W+P L DD + A E
Sbjct: 267 TG-EPAAVVDEDGSPRGIRHLVFWDPPMSGDDGL------TDDIDSPALSKRPATVEAPE 319
Query: 517 LFAEMVQHGLRCIAFCRSRKLCELVLSYTREILE--ETAPHLVDSICVYRAGYVAEDRRR 574
++A M Q ++ + FC SRKL EL ++ + + E + Y AG+ + RR
Sbjct: 320 VWAHMCQKNVQSLLFCDSRKLTELSVNRAKRFISDPENRYQGRPDLASYHAGHGKQSRRG 379
Query: 575 IERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAV 634
E G L GV+ T+ALE+GI++G +D T+ +G+PGS S WQ+ GRSGR R +L+V
Sbjct: 380 TEYQLKEGHLDGVSTTSALEVGINIGGVDGTVLMGYPGSRQSFWQRIGRSGRGTRDALSV 439
Query: 635 YVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFG 694
+V LDQY +++PE + + E +D N+ V Q L CAA E PL+ E + G
Sbjct: 440 FVPSHSTLDQYILQHPEYVLEEDHESAVVDLDNNPVYLQQLNCAAQELPLTRDDAEDFGG 499
Query: 695 SG-LSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEV----- 748
L + + +G L SLDS H P IS+ + ++V
Sbjct: 500 EERLERAVEYGRRKGDLEG--SLDSGV----MYAHRDRPQDAISLYSSGGNTFDVRLAGD 553
Query: 749 --IDMQ------------------------SNEVLEEIEESKAFFQVYEGAVYMHQGHTY 782
ID Q + + I +A+ +EGA +HQG Y
Sbjct: 554 GSIDHQPIGRDRAYRDYHEGAXFDVRLAGDGSIDHQPIGRDRAYRDYHEGATVLHQGEQY 613
Query: 783 LVKEL--NLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKD-QLTKTTAQAL 839
V EL ++ +KA++ Y+T+++ G N Y T + ++ T
Sbjct: 614 QVVELREDIPQPYISLEKANVSYYTQSQ--------GQVNIYDTVVEDSREVGPFTLNWG 665
Query: 840 ACTVTTTWFGFYRLWRGSGIIFD-TVELYLPKYSYESQAVWIQVPQSVKAVVEQNFS--- 895
TV+ + + + GSG + + E +P +Q W + P ++ + S
Sbjct: 666 YGTVSVHYSTYLKREIGSGDVLELGNETGVPPLEMRTQLCWAETPNDIERAMLNKHSEYH 725
Query: 896 -------------FRSGLHAASHALLHVVPIYVRCNFSDLAP----ECP-NPHDSRYFPE 937
+ G+HA HA++ V P+ ++ + D+ P NP S +F
Sbjct: 726 NPECINLPPRLHGYLGGIHAVEHAMIAVSPLELKVDGGDIGGLATNRLPGNPDKSGWF-- 783
Query: 938 RILLYDRHPGGTGVSKQV 955
+YD GG G S+ +
Sbjct: 784 ---IYDGIEGGLGFSRSI 798
>gi|448721230|ref|ZP_21703801.1| DEAD/DEAH box helicase domain protein [Halobiforma nitratireducens
JCM 10879]
gi|445778462|gb|EMA29405.1| DEAD/DEAH box helicase domain protein [Halobiforma nitratireducens
JCM 10879]
Length = 823
Score = 283 bits (724), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 217/738 (29%), Positives = 339/738 (45%), Gaps = 114/738 (15%)
Query: 256 LYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLE-ALSHDLSSS---ALYMFPTKA 311
L+SHQA ++ A G+NV V+T TSSGK+ Y L + AL + AL ++PTKA
Sbjct: 62 LWSHQAAALEALADGENVCVSTSTSSGKTYVYGLEIARRALGRSERTDEVRALLVYPTKA 121
Query: 312 LAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHG 371
L++DQ R L + + +GVYDGDT D+ +R+ A ++ITN L+ + +H
Sbjct: 122 LSRDQERELAELFADLGLDLTVGVYDGDTDPSDKARIREEANVVITNVAGLNQYLEGHH- 180
Query: 372 QFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSH 431
+++ + +N L VV+DEAH++ G G H A +LRR R+
Sbjct: 181 RWADVHANCEL-------------------VVVDEAHSWTGISGMHAAWVLRRARRVIDW 221
Query: 432 VYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLN 491
YG DP +V ++AT NP EH L +I +DGSP ++ V W P
Sbjct: 222 -YGGDPQYVLTSATIGNPGEHAQALTG-EPATVIDDDGSPSGRRHLVFWEPP-------E 272
Query: 492 KSQTDMDDTRNAANKTSSPIS-EVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILE 550
+D D A + P + E L+A HG+ + FC SRK EL + +
Sbjct: 273 DEGSDGD-----ARPSKRPATVEAPELWAHCCYHGVPSLLFCDSRKGTELAVDRATAFVT 327
Query: 551 ETAPHLVDSICV--YRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHL 608
A S+ + Y AG+ RR E G L GVA T+ALE+GIDVG ID T+ +
Sbjct: 328 SAASPYQGSVALEPYNAGHGKRSRRETESRLKAGDLDGVATTSALEVGIDVGGIDGTVLV 387
Query: 609 GFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNH 668
G+PGS +S WQ+ GR+GR R SL+V+V LD Y ++PE L + E +D +N
Sbjct: 388 GYPGSRSSFWQRLGRAGRGTRESLSVFVPDHATLDGYVSQHPEYLLEQDPEDAVVDLENQ 447
Query: 669 KVLEQHLVCAALEHPLSLIYDEKYFGSGL---SSGITTLKNRGYLSSDPSLDSSAKIFEY 725
V QHL CAA E P++ +++ G + +++ Y + D E
Sbjct: 448 PVFLQHLRCAAQELPVTREDADRFGGRERLLPARSEMCIRDSIYAAGGRGFDVRVAGDES 507
Query: 726 IGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVK 785
I HE I E++AF +EGA ++QG Y V+
Sbjct: 508 IDHEP-----------------------------IGEARAFRDYHEGATVLYQGDRYEVR 538
Query: 786 EL--NLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTA----QAL 839
L + + AD+ Y+T+++ IH T++ + + + A
Sbjct: 539 ALRDDRPQPFVELEPADVDYYTQSQRQVAIH--------DTEVRRSREVEDGAGFRLNWG 590
Query: 840 ACTVTTTWFGFYRLWRGSGIIFDT-VELYLPKYSYESQAVWIQVPQSV-KAVVEQNFSFR 897
TVT + + + +G + +T +E +P +Q W +VP ++ +AV + + +R
Sbjct: 591 YGTVTVRYPTYTKRDVETGEVLETGLETGVPPVEMRTQLCWAEVPTAIERAVTDAHADYR 650
Query: 898 S---------------GLHAASHALLHVVPIYVRCNFSDLAPECPN-----PHDSRYFPE 937
+ G+HA HA++ V P+ + + DL N P S +F
Sbjct: 651 NEECVDLPPRLHGYLGGIHAIEHAMIGVAPLELTVDSDDLGGLATNRLPDAPETSGWF-- 708
Query: 938 RILLYDRHPGGTGVSKQV 955
+YD GG G S+++
Sbjct: 709 ---IYDGVEGGVGFSRRI 723
>gi|320170049|gb|EFW46948.1| helicase superfamily protein [Capsaspora owczarzaki ATCC 30864]
Length = 1558
Score = 282 bits (721), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 141/314 (44%), Positives = 203/314 (64%), Gaps = 9/314 (2%)
Query: 509 SPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYT-REILEETAPHLVDSICVYRAGY 567
SP+ + + V+ GLR IAF R RK+CEL+L YT R ++EE LV + YR+GY
Sbjct: 901 SPLVACAQILRLAVKLGLRTIAFARIRKVCELMLRYTHRFLVEEGLASLVPKVTSYRSGY 960
Query: 568 VAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRR 627
DRRRIER F G L + ATNALELG+DVG +D TLHLGFP S++SLWQQAGRSGR
Sbjct: 961 SIPDRRRIERGLFHGHLTAITATNALELGVDVGTLDATLHLGFPSSLSSLWQQAGRSGRN 1020
Query: 628 ERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLI 687
ERPS++++VA+ P+DQ+F ++P ++F +E ID N VL HL+CAA EHPL+
Sbjct: 1021 ERPSVSIFVAYPSPIDQHFCRHPLEIFTREMEASCIDPGNESVLWGHLLCAAAEHPLT-D 1079
Query: 688 YDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIG------HEKMPSHTISIRAI 741
D ++FG S + + G +D A + G ++PS +SIR+I
Sbjct: 1080 ADSQWFGPTFDSVVAVMLA-GRRPGGVPMDGGAVLARRNGLYVQTFRIEVPSAAVSIRSI 1138
Query: 742 ESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADL 801
++ RY+V++ + E L+EI+ES+AFF++Y+GA+Y+HQG+ YLV++L+L+ +IA +
Sbjct: 1139 DTIRYKVVNELTGECLDEIDESRAFFEIYDGAIYLHQGNEYLVRKLDLTERIAFVKPCIA 1198
Query: 802 KYFTKTRDYTDIHV 815
Y+TK RD D+
Sbjct: 1199 GYYTKQRDRKDVQT 1212
Score = 186 bits (473), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 125/318 (39%), Positives = 178/318 (55%), Gaps = 37/318 (11%)
Query: 178 ARRSQSSTSSSHSFQRRCSDKSQLLPL----EMVEHLRKGIGSQGQMVHVEDISARKAVL 233
A ++SST ++H K+ PL E ++ ++ +GQ+VH++DI AR A +
Sbjct: 413 ANETESSTPTAH--------KTDGGPLHSAHEFIQQIQAQPFYEGQIVHIQDIPARPAQV 464
Query: 234 VEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLE 293
+ L ++AL G LYSHQ E++ A G++ +V+T TSSGKSL YN +
Sbjct: 465 KPLTINLHPAMRAALVERGFDSLYSHQVEALEALWKGQHAIVSTSTSSGKSLIYNATAIN 524
Query: 294 ALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDA---SIDIGVYDGDTTQKDRMWLRD 350
A + + ALY+FPTKALAQDQLRAL A+ + DGDT + +R +R+
Sbjct: 525 AALMNRQALALYLFPTKALAQDQLRALNALLALSSLVPYQLFAATLDGDTPKSERANVRE 584
Query: 351 NARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAY 410
+A +++TNPDMLH+SILP H + R+ S LRL VV+DEAH Y
Sbjct: 585 SASVVLTNPDMLHVSILPQHKNWPRLFSQLRL-------------------VVVDEAHVY 625
Query: 411 KGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLEL--IQND 468
GAFG H + +LRRL RLC +YG+ P F+ +AT +NPR +L + E+ I D
Sbjct: 626 SGAFGSHVSCVLRRLRRLC-ELYGAAPQFICCSATISNPRNLMSQLIGVPEPEIAVISRD 684
Query: 469 GSPCAQKLFVLWNPTSCL 486
GSP K FV W+P + L
Sbjct: 685 GSPSGHKKFVFWDPNAKL 702
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 71/106 (66%), Gaps = 1/106 (0%)
Query: 848 FGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQ-NFSFRSGLHAASHA 906
FGF ++W+ + +FD + L LP +E+ A WI + QSVK VE F FR+G H A+HA
Sbjct: 1372 FGFKKIWQKNSAVFDRLPLDLPPVEFETYASWIDLSQSVKRHVEACGFEFRAGAHGAAHA 1431
Query: 907 LLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVS 952
+L++VP+++ C+ +DL EC + ++R P RILLYD PGG G++
Sbjct: 1432 VLNMVPLFLSCDPNDLGTECISISETRLRPPRILLYDTRPGGVGLA 1477
>gi|448732479|ref|ZP_21714758.1| helicase with metal-binding cysteine cluster [Halococcus
salifodinae DSM 8989]
gi|445804656|gb|EMA54892.1| helicase with metal-binding cysteine cluster [Halococcus
salifodinae DSM 8989]
Length = 994
Score = 281 bits (719), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 216/785 (27%), Positives = 345/785 (43%), Gaps = 119/785 (15%)
Query: 247 ALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLE-ALSHDLSSSALY 305
AL+ GI + Y HQ +I A G+N V+AT T+SGKSL Y +P +E AL HD LY
Sbjct: 20 ALERRGIDQFYQHQTAAIDAIRDGENAVIATPTASGKSLIYTVPAVERALDHD--GRTLY 77
Query: 306 MFPTKALAQDQLRALLAMTK--AFDASIDIGVYDGDTTQKDRMWLR-DNARLLITNPDML 362
+ P +AL DQ + +T A++D+G Y G +Q ++ +R D +++ PD+L
Sbjct: 78 IAPQRALINDQETSFTDLTDDLGLGATVDVGQYTGQLSQTEKRAVRGDQPHIVLMTPDLL 137
Query: 363 HMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALIL 422
H +LP+ + F + +VIDE H Y+G FG AL++
Sbjct: 138 HYGVLPHDHLWE-------------------WFFRQLDTIVIDEVHEYRGIFGSQIALVM 178
Query: 423 RRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLS--TLELIQNDGSPCAQKLFVLW 480
RRL R+C Y S+P F+ +AT NP EH + S + +I D S ++ W
Sbjct: 179 RRLTRMCER-YNSNPQFICCSATIGNPAEHAGNVTGQSAESFSVIDEDTSTTGATHWLFW 237
Query: 481 NP------------------------------TSCLRSVLNKSQTDMDDTRNAANKTSSP 510
NP TS VL D +++ S+P
Sbjct: 238 NPPPVKDESQSGTDTSHPAPSEREPEPQPPTMTSDGGEVLPAPAPPSTDIDTSSDAQSAP 297
Query: 511 IS-------------------------EVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYT 545
+ E LF ++V G + + F R+R+ E ++
Sbjct: 298 TTDDSGEGETEASVEPESGGERKSNHAEAVRLFCDLVTRGYQTLVFTRTRQGAERCAEWS 357
Query: 546 REILEETAPH-LVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDV 604
L + H ++I Y+A + R IE G + GV +T+ALELG+DVG +DV
Sbjct: 358 AAELHKRGNHEPANAITAYQAALKQDRREEIEDGLHDGSIPGVWSTSALELGVDVGGLDV 417
Query: 605 TLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHID 664
+ +PG+ Q+AGR+GR SL V LDQY M +P+ F+ E ++
Sbjct: 418 VILDRYPGTRMQTHQRAGRAGRGRDASLVTLVGGRDQLDQYLMGHPDVFFEGNPEEAAVN 477
Query: 665 AQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFE 724
N +++ H++ AA E LS DE++FG +T L++ G L + + +
Sbjct: 478 PANDQLMPDHVLSAARESWLSPA-DEQHFGERFPEFVTQLESEGLLERRNT--NKGVRWT 534
Query: 725 YIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLV 784
Y G + P H +SIRAI+ ++ D + L + A V+ A+Y HQG Y V
Sbjct: 535 YAG-DGSPQHEMSIRAIDDREIQIRDRLNETDLASLSYDDALRDVHPNAIYHHQGEKYEV 593
Query: 785 KELNLSSKIALCQKADLKYFTKTRDYTDIHV------------SGGNNAYATKISKDQLT 832
+L+L IA + +L Y+T+ I V SG +A ++Q+T
Sbjct: 594 VDLDLERDIAFLESTELSYYTQALTDKAISVNEILDETTLATHSGVTVGFADIEFREQVT 653
Query: 833 KTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVP----QSVKA 888
K L CT G + LP ++A++ +P Q+++A
Sbjct: 654 KY----LRCTQGNDDDGEPI----------PLPEPLPPTELRTRALYFTIPPAIKQNLRA 699
Query: 889 VVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGG 948
+ + F +HA HA++ + P+ C+ D+ P + I +YD +PGG
Sbjct: 700 ESDVDDGFEGAIHAVEHAMISLFPLEFLCDRRDIG-GLSTPLHPQTAKSTIFIYDGYPGG 758
Query: 949 TGVSK 953
G+++
Sbjct: 759 VGLAR 763
>gi|448363044|ref|ZP_21551648.1| hypothetical protein C481_13389 [Natrialba asiatica DSM 12278]
gi|445647666|gb|ELZ00640.1| hypothetical protein C481_13389 [Natrialba asiatica DSM 12278]
Length = 933
Score = 280 bits (717), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 224/732 (30%), Positives = 336/732 (45%), Gaps = 114/732 (15%)
Query: 256 LYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLE------ALSHDLSSSALYMFPT 309
LY+HQA ++ A +NV VAT T+SGK+ Y L + A S D ++A +PT
Sbjct: 98 LYAHQAAALSALSRDENVCVATSTASGKTRIYALQIARHYLNARARSGDADATAYVCYPT 157
Query: 310 KALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKD-RMWLRDNARLLITNPDMLHMSILP 368
KAL++DQ R L I + VYDGDT + D R +R+ A ++ITN ++ + L
Sbjct: 158 KALSRDQERELNDFYDTLGLDISVRVYDGDTERGDTRRQIRETADVIITNFAGVN-AYLH 216
Query: 369 YHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRL 428
H +++R LS L VVIDE+H Y G G H A I+RRL R+
Sbjct: 217 DHDRWARFLSACEL-------------------VVIDESHTYTGVHGMHVAWIVRRLKRV 257
Query: 429 CSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLR- 487
+ Y +DP FV ++AT NP H L + +I DGSP + VLWNP R
Sbjct: 258 LEY-YDADPQFVLTSATIGNPGAHSSSLVG-EPVTVIDEDGSPTGPRELVLWNPPPQARE 315
Query: 488 -------SVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCEL 540
S + +T D +A E L + + H + + F SRKL EL
Sbjct: 316 ESADERASGSSGDETPDDGGEDAITDRVPATVEAPKLLSHLTYHDAQTLLFTPSRKLAEL 375
Query: 541 VLSYTREILEE-----TAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALEL 595
+ + + T P +I Y AG+ +R E G L GVA+TNALEL
Sbjct: 376 SVKRASKHRRDRSRYYTNPDRGSAIEPYHAGHSRRNRHGTEHRLKTGLLDGVASTNALEL 435
Query: 596 GIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFK 655
GI+VG +D T+ LG+PG S WQQ GR+GR + +L+V VA LDQY + P+ L +
Sbjct: 436 GINVGEMDATVQLGYPGQRQSFWQQLGRAGRGTKRALSVLVAGHRTLDQYVVSNPDYLLE 495
Query: 656 SPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSG-------LSSGITTLKNRG 708
+ +E +D +N V +HL+CAA E L DE G+ L + + G
Sbjct: 496 TDVEDAVVDTRNDAVFARHLLCAADE----LALDESDGGAAGFADRDRLERAVEMWRRAG 551
Query: 709 YLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEV-----IDMQSNEVLEEIEES 763
L+ L++ Y G + P ++S+ A E Y V D + + +E + E
Sbjct: 552 RLAG--HLETGVS---YTGPPR-PQGSVSLYATTGEEYAVELAEDADERHDPEMEPLAEE 605
Query: 764 KAFFQVYEGAVYMHQGHTYLVKELNLSS--KIALCQKADLKYFTKTRDYTDIHVSGGNNA 821
+ +EGAV +H+G Y V ++ ++ + D+ Y+T+TR TD+ V
Sbjct: 606 RVLRDFHEGAVRLHEGRQYEVCAVDHTTPRPSVTLRPTDVNYYTRTR--TDVTV------ 657
Query: 822 YATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYL------------P 869
L + ++ T FG R+ G +D V ++ P
Sbjct: 658 ---------LDAVSEESREIGPFTLHFGRGRVLVYHG-TYDKVAIHGGQKTEQMLPTENP 707
Query: 870 KYSYESQAVWIQVPQSVK-AVVEQ-----------------NFSFRSGLHAASHALLHVV 911
S E+Q W++VP+ V+ A+VE+ + + GLHAA HA + V
Sbjct: 708 PLSMETQLCWLEVPERVETALVEKYRDVSIPELDGDLAETAHLGYAGGLHAAEHATIGVA 767
Query: 912 PIYVRCNFSDLA 923
P+ + + DL
Sbjct: 768 PLELMVDKRDLG 779
>gi|293192030|ref|ZP_06609354.1| putative ATP-dependent RNA helicase [Actinomyces odontolyticus
F0309]
gi|292820378|gb|EFF79367.1| putative ATP-dependent RNA helicase [Actinomyces odontolyticus
F0309]
Length = 859
Score = 280 bits (717), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 227/822 (27%), Positives = 353/822 (42%), Gaps = 137/822 (16%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
+ R + + P + A G+ + HQ E++ A G + V+AT T SGKSL
Sbjct: 14 LPGRSGKIADWPQWVSPAVVDAWARRGVEHPWIHQREALDAVREGLDPVLATGTGSGKSL 73
Query: 286 CYNLPVLEALSHDLSSS----------ALYMFPTKALAQDQLRALLAMTKAFDASIDI-- 333
P+L L SS ALY+ PTKALA DQL +L+++ D+
Sbjct: 74 AAWTPILSDLVEAEDSSRISGIHRRPTALYLAPTKALAADQLASLMSLLGQDGKPADVQA 133
Query: 334 --------------------GVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQF 373
DGDT ++ + W R A L+++NPD LH +LP H ++
Sbjct: 134 SADAEGSPSLVDERLRRVRATTVDGDTPREAKEWARAGADLILSNPDFLHYVMLPSHQRW 193
Query: 374 SRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVY 433
SR L++LRLI VIDEAH ++G G H AL++RRL R+ H+
Sbjct: 194 SRFLASLRLI-------------------VIDEAHHWRGVTGSHIALVVRRLLRVAHHL- 233
Query: 434 GSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKS 493
G+DP V +AT + L + I DGSP VLW + ++S
Sbjct: 234 GADPRVVMLSATVRDAAAVGHALTGRDAVA-ITEDGSPAGAHELVLWQGAI----MADES 288
Query: 494 QTDMD---DTRNAANKTSS---PIS------EVSYLFAEMVQHGLRCIAFCRSRKLCELV 541
+ D+ + +A T++ PI E + L V+ G R +AF RSR E V
Sbjct: 289 EVDISSFLEALDAPPGTATLKVPIVRRSAGVEAANLATAFVEEGARLLAFVRSRAGAEAV 348
Query: 542 LSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGH 601
+ R+ L + YR GY+ E+RR +E G + +A T+ALE+G+D+
Sbjct: 349 AAQVRDRLSARGSANAGRVGAYRGGYLPEERRALEEAIRTGGVRALATTSALEMGLDISG 408
Query: 602 IDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECC 661
+D T+ +G+PG+ ASL QQ GR+GR P +V +A PLD Y +++PE + +E
Sbjct: 409 LDATITVGWPGTRASLRQQIGRAGRAGAPGTSVLIASANPLDAYLVRHPEHILGE-VEAS 467
Query: 662 HIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAK 721
ID N VL H+ AA E P++ D YFG L L GYL P A
Sbjct: 468 VIDPSNPWVLAPHVAAAAAEIPIT-PSDITYFGQELRGVTERLVADGYLKHRP-----AG 521
Query: 722 IFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQG-- 779
F + PS +R + +++D+ + V+ I+++ A V+ GA+Y+HQG
Sbjct: 522 YFWDATRAERPSDLTDLRGAAGD-VQIVDVATGTVVGTIDQASADAHVFPGAIYIHQGRT 580
Query: 780 -HTYLVKELNLSS----------------------------------------------- 791
H + L +
Sbjct: 581 FHVLSITSLTTPTAPATQGWPRALLPEAPGGTRGTERLGGGEREGAQASSIIIPPARTGD 640
Query: 792 -KIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGF 850
++AL ++ T++ +T + V Y + D T T +T
Sbjct: 641 ARVALVEEVRTPLRTRSTTHTSVEVCAVEETY---VCGD---GTVTWHHGPTNVSTRVTD 694
Query: 851 YRLWRGSGIIF-DTVELYLPKYSYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALL 908
Y L R G+ F +EL+LP ++ +++ W + P ++ + + LHA HA++
Sbjct: 695 YDLLRLPGLEFIRNIELFLPTHTLPTKSTWFTLTPAALATMGIEAADLAGTLHATEHAMI 754
Query: 909 HVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTG 950
++PI C+ DL HD P + ++D GG G
Sbjct: 755 GILPIVATCDRWDLGGLSTELHDDTGAPT-VFIHDAFRGGAG 795
>gi|448307779|ref|ZP_21497668.1| putative helicase [Natronorubrum bangense JCM 10635]
gi|445595030|gb|ELY49151.1| putative helicase [Natronorubrum bangense JCM 10635]
Length = 812
Score = 280 bits (717), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 214/753 (28%), Positives = 341/753 (45%), Gaps = 107/753 (14%)
Query: 217 QGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVA 276
+GQ+V R A V D L D L++ LYSHQAE+I AG N VA
Sbjct: 26 KGQLVDTIADPPRAANTVPATDVLPDGLADHLEN----DLYSHQAEAIRELQAGNNATVA 81
Query: 277 TMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVY 336
T T+SGK+ Y + + + AL+++PTKAL+ DQ RA+ + D Y
Sbjct: 82 TSTASGKTWIYAIYFCLLKIQNPDARALFLYPTKALSADQERAVNDLFNQLDIDAIAETY 141
Query: 337 DGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIF 396
DGDT Q + +RD ++I+N ++ L H ++ + N L+A
Sbjct: 142 DGDTKQDRKKLIRDRVDVVISNFAGIN-QYLDSHMKWRDVFQNCELMA------------ 188
Query: 397 LFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMEL 456
IDE H Y G G H A ++RRL RL H YGSDP V STAT NPREH L
Sbjct: 189 -------IDECHTYTGVHGMHVAWVIRRLRRLLDH-YGSDPQLVCSTATIGNPREHSEHL 240
Query: 457 ANLSTLELIQNDGSPCAQKLFVLWNP----TSCLRSVLNKSQTDMDDTRNAANKTSSPIS 512
+ ++I DGSP ++ W P T L S L++ + + R A+
Sbjct: 241 TG-AEFQVIDEDGSPHGRREIGFWQPPIQETDELVSELDEDEI-LPSMRENAD------D 292
Query: 513 EVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDR 572
E + + ++ ++ + F SR+ E+ + E + + Y AG + R
Sbjct: 293 EAAGALVHLAKNDVQTLMFTDSRQGTEIGVKRAIEAARDHPDGKYIDVAPYHAGLSKQKR 352
Query: 573 RRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSL 632
R +E GG++ GV +T+ALELGID+G +D T+ G+PG+ S WQ+ GR+GR SL
Sbjct: 353 RAVENQLNGGQVDGVISTSALELGIDIGSMDATVLAGYPGTRQSFWQRIGRAGRGTTDSL 412
Query: 633 AVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKY 692
+V+V +DQY + P+ + + +E ID N+ V +H++CAA E PL+ D ++
Sbjct: 413 SVFVPQSDAIDQYILNNPDYVLEENVEDAVIDLSNNPVYAKHILCAASERPLTEA-DTEW 471
Query: 693 FG--SGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVID 750
FG L+ I + G + D LD A+ Y G + P IS+ A E+Y+V
Sbjct: 472 FGPRDRLARAIDMWQAAGQMVGD--LDRGAQ---YNGTAR-PQSGISLYATTDEQYDVRQ 525
Query: 751 MQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDY 810
+ +E +++ + + + + GA+ ++ G Y V+E+ + +I Y
Sbjct: 526 VDGEIDMEPLDKERVYREYHPGALVLYDGDQYEVQEV-VEDRI--------------NPY 570
Query: 811 TDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGII------FDTV 864
+ S N Y I Q+T L + G Y+L G G + ++ +
Sbjct: 571 VTVERSNSTN-YTQAIHDKQITD-----LDVERSYDLDGGYQLCAGMGTVHINYTAYNVI 624
Query: 865 ELY------------LPKYSYESQAVWIQVPQSVKAVV---------------------- 890
+++ L S +Q +WI PQ + V
Sbjct: 625 DMHTGEVVEPLIPIDLDPISLRTQLMWIAFPQEIVTRVLREIPRSSYLQPDEGAEFASMG 684
Query: 891 EQNFSFRSGLHAASHALLHVVPIYVRCNFSDLA 923
E+ ++ GLH H ++ + P+ +R + SD+
Sbjct: 685 EEEYTVVGGLHGGEHGMIKMAPLELRLDNSDMG 717
>gi|76802419|ref|YP_327427.1| helicase [Natronomonas pharaonis DSM 2160]
gi|76558284|emb|CAI49872.1| probable DEAD/DEAH box helicase [Natronomonas pharaonis DSM 2160]
Length = 817
Score = 279 bits (714), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 234/798 (29%), Positives = 351/798 (43%), Gaps = 120/798 (15%)
Query: 218 GQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVAT 277
GQ+ E SARKA V L S L + LY HQA + A G+NVV T
Sbjct: 26 GQVTASEHRSARKADTVPAERVLRPELASRLDN----DLYRHQAAGLNALADGENVVATT 81
Query: 278 MTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYD 337
TSSGK+ Y L + ++AL ++P KAL +DQ + L +D + VYD
Sbjct: 82 ATSSGKTRIYALQMARNQLASPDATALCLYPMKALTRDQEQTLNDRFSGWDVDTRVEVYD 141
Query: 338 GDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQ---FSRILSNLRLIAFSLVTTEVYL 394
GDT + + +R A ++TNP L++ LP HG +SR SNL L
Sbjct: 142 GDTKPERKPSIRTGADTILTNPAGLNV-YLPRHGTDSGWSRFYSNLEL------------ 188
Query: 395 IFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCM 454
VV+DEAH Y G G H A ILRRL RL + YG+DP FV +TAT NP +H
Sbjct: 189 -------VVVDEAHQYSGIMGTHVAWILRRLRRLLFY-YGADPQFVLTTATIGNPAQHAA 240
Query: 455 ELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANK-TSSPISE 513
L +I DGSP ++ VLW P +V D+D T + +S E
Sbjct: 241 RLTG-EAFTVIDEDGSPRGERDIVLWKPPIDEDAVKKAHDADIDPTEADMEEFRASTGGE 299
Query: 514 VSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSIC---VYRAGYVAE 570
+ + A + + + + FC +R+ E+ R+I H DS Y G
Sbjct: 300 AAKVTAHLAVNERQTLQFCTARQGTEIA---ARKISAAARDHPRDSYIKTRAYHGGLGKR 356
Query: 571 DRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERP 630
RR IE G + VA+TNALELGIDVG ID T+ G+PG+ S WQQ GR+GR
Sbjct: 357 TRRSIETQLKDGSVDAVASTNALELGIDVGGIDATVTSGYPGTRQSFWQQVGRAGRGTSD 416
Query: 631 SLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLS----- 685
+L+V V +D Y + P+ LF+ +E + N +V HL AA E PL+
Sbjct: 417 ALSVLVGGADAMDSYILDNPKYLFEDDVENAVVSIDNEQVYADHLCVAARERPLTDDDAG 476
Query: 686 LIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESER 745
L+ DE+ L + ++ G L LDS Y G + P IS+ +
Sbjct: 477 LLGDERR----LQEMVAMWQDAGVLEQGVGLDSG---VHYTGDSR-PESRISMYDTSGRQ 528
Query: 746 YEVIDMQSNEVLEE-IEESKAFFQVYEGAVYMHQGHTYLVKELN---LSSKIALCQKADL 801
Y ++D + ++ + + + +A +EGA+++H G Y V E+ + +I + ++
Sbjct: 529 Y-IVDCRDGDIDHDPVAKERAARDYHEGALFLHDGQQYEVVEVTHDAPAPRITVEERNTG 587
Query: 802 KYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIF 861
+Y TR + H+S L T++ L Y LW G G +
Sbjct: 588 RY---TRTLSQKHIS-------------NLRPETSRELG--------DGYTLWFGRGDVD 623
Query: 862 DTVELYL------------------PKYSYESQAVWIQVP-------------------- 883
+ + Y+ P S +++ +W+ +P
Sbjct: 624 ISYDQYVVHNISTGELESGPHPTGSPPLSLDTELMWVSLPETHLEDTIAGLDVPLLEPTE 683
Query: 884 ---QSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAP-ECPNPHDSRYFPERI 939
Q V +++ G+HAA H ++ + P+ + + SD+ P HD R
Sbjct: 684 HAKQDVGITEPDRYTYAGGIHAAEHGIIQLAPLELLIDNSDIGGLSTPAHHDERIPGPVW 743
Query: 940 LLYDRHPGGTGVSKQVTD 957
++D GG G S+ + D
Sbjct: 744 FVHDGIDGGIGFSRAIYD 761
>gi|284164965|ref|YP_003403244.1| hypothetical protein Htur_1686 [Haloterrigena turkmenica DSM 5511]
gi|284014620|gb|ADB60571.1| Protein of unknown function DUF1998 [Haloterrigena turkmenica DSM
5511]
Length = 931
Score = 279 bits (713), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 228/741 (30%), Positives = 344/741 (46%), Gaps = 112/741 (15%)
Query: 256 LYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPV----LEALSHDLSSSALYMFPTKA 311
LY+HQAE++ A +NV VAT TSSGK+ Y L + LEA + ++A ++PTKA
Sbjct: 68 LYAHQAEALEALAREENVCVATSTSSGKTRIYALQIARNYLEARARGEDATAYVLYPTKA 127
Query: 312 LAQDQLRALLAMTKAFDASIDIGVYDGDTTQ-KDRMWLRDNARLLITNPDMLHMSILPYH 370
L++DQ R L + I + VYDGDT + +R +R+ A ++I+N ++ + L H
Sbjct: 128 LSRDQERELNDLFDQLGLEITVRVYDGDTERGSNRKRIREEADVIISNFAGVN-TYLHDH 186
Query: 371 GQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCS 430
+++R LS L VVIDE+H Y G G H A I+RRL R+
Sbjct: 187 DRWARFLSACDL-------------------VVIDESHTYTGVHGMHVAWIVRRLKRVLE 227
Query: 431 HVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNP-------- 482
+ Y +DP FV ++AT NP EH L + S + ++ DGSP + VLWNP
Sbjct: 228 Y-YDADPQFVLTSATIGNPGEHSAALIDES-VTVVDEDGSPTGPRDLVLWNPPPRAREDE 285
Query: 483 --------TSCLRSVLNKSQTDMDDTR------NAANKTSSPIS----------EVSYLF 518
T R+ ++ + D DD R +A ++ P E +
Sbjct: 286 RSESSETRTGATRAERSEGREDSDDERDEWGENDADTESDDPADAVVERVPATVEAPRML 345
Query: 519 AEMVQHGLRCIAFCRSRKLCELVLSYTREILEET-----APHLVDSICVYRAGYVAEDRR 573
+ + H + + F SRKL EL + + + P +I Y AG+ + R
Sbjct: 346 SHLTYHDAQTLLFAPSRKLAELSVKRASKHRHDNRRYYANPDRGSAIEPYHAGHSRKKRH 405
Query: 574 RIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLA 633
E G L GVA+TNALELGI++G +D T+ LG+PG S WQQ GR+GR + +L+
Sbjct: 406 GTEHQLKTGVLDGVASTNALELGINIGEMDATVQLGYPGQRQSFWQQIGRAGRGTKRALS 465
Query: 634 VYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYF 693
V VA LDQY + P+ L +S +E +D N V QHL CAA E L D+
Sbjct: 466 VLVAEHRTLDQYVVNNPDYLLESDVEDAVVDVDNDAVFAQHLRCAADE----LAVDDSDI 521
Query: 694 GS-----GLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEV 748
G L I + G L SL++ Y+G + P TIS+ A E YEV
Sbjct: 522 GGLADRERLERAIEMWRRAGQLRG--SLETGVS---YVGPPR-PQQTISLYATTGEEYEV 575
Query: 749 -----IDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSS--KIALCQKADL 801
+D + + +E + + +EGAV +HQG Y V +++ + + D+
Sbjct: 576 DLADGVDERHDPGMEPLARERVLRDFHEGAVRLHQGQQYEVVDVDHDAPRPSVTVRPTDV 635
Query: 802 KYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGS-GII 860
Y+T+TR TD+ V + + I L + L T + R GI
Sbjct: 636 DYYTRTR--TDVTVLDAVSEESRDIGNFTLHFGRGRVLVYHGTYDKVAVHGGKRKEQGIP 693
Query: 861 FDTVELYLPKYSYESQAVWIQVPQSV-KAVVEQ-----------------NFSFRSGLHA 902
+ P E+Q W++VPQ + +A++E+ + + GLHA
Sbjct: 694 TEN-----PPLEMETQLCWLEVPQRIERALIEKYREFEVPELEDGLAGTAHLGYAGGLHA 748
Query: 903 ASHALLHVVPIYVRCNFSDLA 923
A HA + V P+ + + DL
Sbjct: 749 AEHATIGVAPLELMVDKRDLG 769
>gi|433590430|ref|YP_007279926.1| helicase family protein with metal-binding cysteine cluster
[Natrinema pellirubrum DSM 15624]
gi|448332166|ref|ZP_21521412.1| DEAD/DEAH box helicase domain protein [Natrinema pellirubrum DSM
15624]
gi|433305210|gb|AGB31022.1| helicase family protein with metal-binding cysteine cluster
[Natrinema pellirubrum DSM 15624]
gi|445627815|gb|ELY81133.1| DEAD/DEAH box helicase domain protein [Natrinema pellirubrum DSM
15624]
Length = 835
Score = 278 bits (711), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 226/731 (30%), Positives = 332/731 (45%), Gaps = 82/731 (11%)
Query: 257 YSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQ 316
+SHQA ++ A G+NV V T TSSGK+ Y L + + AL ++PTKAL++DQ
Sbjct: 74 WSHQANALAALERGENVCVTTSTSSGKTYVYALEIARRFRENPDVRALLVYPTKALSRDQ 133
Query: 317 LRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRI 376
R L + + +GVYDGDT ++++ +R+ A ++ITN L+ + +H
Sbjct: 134 ERELNDLFDDLGLDVTVGVYDGDTKRREKSRIREEANVVITNFAGLNQYLEGHH------ 187
Query: 377 LSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSD 436
R AF +V+DEAHA+ G G H A ILRR R+ YG D
Sbjct: 188 ----RWAAF----------HAGCDLLVVDEAHAWTGISGMHAAWILRRAQRVIE-WYGGD 232
Query: 437 PSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTD 496
P +V ++AT NP +H L +I DGSP ++ V W+P + + D
Sbjct: 233 PQYVLTSATIGNPADHAEALTG-EPATVIDEDGSPSGRRHLVFWDPPTDGDAGEGGDGDD 291
Query: 497 MDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHL 556
++ A E ++A HG+ + FC SRK EL + +E LE P L
Sbjct: 292 WRPSKRPAT------VEAPEVWAHCCYHGVPSLLFCDSRKGTELAVGRAQEFLE--TPSL 343
Query: 557 VDS----ICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPG 612
S + Y AG+ RR E G L GVA T+ALE+GIDVG ID T+ LG+PG
Sbjct: 344 PYSGSADLAAYNAGHGKRSRRSTENRLKSGNLDGVATTSALEVGIDVGGIDGTVLLGYPG 403
Query: 613 SIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLE 672
S S WQ+ GRSGR ER +L+V+V LDQY + +PE L + E +D +N+ V
Sbjct: 404 SRQSFWQRIGRSGRGEREALSVFVPSHSTLDQYVLNHPEYLLEEEPESAVVDLENNPVYL 463
Query: 673 QHLVCAALEHPLSLIYDEKYFGSG-LSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKM 731
QHL CAA E PL ++ G L + + G S A Y H
Sbjct: 464 QHLRCAAQELPLRREDAARFGGRDRLEQAVEYGRRTGEFEG-----SLAGGITY-AHRDR 517
Query: 732 PSHTISIRAIESERYEV-------IDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLV 784
P IS+ A + +EV ID Q I ++A+ +EGA +++G Y V
Sbjct: 518 PQDEISLYASGGDSFEVRLAGEGSIDHQP------IGRARAYRDYHEGATVLYRGDQYEV 571
Query: 785 KEL--NLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQ-LTKTTAQALAC 841
EL + + ADL Y+T+++ T I Y T+I + + +
Sbjct: 572 VELREDRPQPYVELEAADLDYYTQSQRRTTI--------YDTEIRESRDIGDFRLNWGYG 623
Query: 842 TVTTTWFGFYRLWRGSGIIFDT-VELYLPKYSYESQAVWIQVPQSVKAVVEQNFS----- 895
TVT F + SG + +E +P +Q W +VP V+ V S
Sbjct: 624 TVTVHHETFLKRDLESGDVRTVGLETGVPPLEMRTQLCWAEVPADVERAVTAAHSDYHND 683
Query: 896 -----------FRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDR 944
+ G+HA HA++ V P+ + + +DL N +YD
Sbjct: 684 ECEELPPRLHGYLGGIHAVEHAMIAVAPLELTVDAADLGGLATNRLPDGTDASGWFIYDG 743
Query: 945 HPGGTGVSKQV 955
GG G S+++
Sbjct: 744 IEGGLGFSRRI 754
>gi|299472178|emb|CBN77163.1| DEAD/DEAH box helicase domain-containing protein [Ectocarpus
siliculosus]
Length = 990
Score = 278 bits (711), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 152/449 (33%), Positives = 238/449 (53%), Gaps = 63/449 (14%)
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYR 564
+ SPI E + + A +V+ ++ +AFCR+RKL EL L Y + L +TAP +V + YR
Sbjct: 483 GRRRSPICETAQILAALVKQRVKTLAFCRTRKLTELTLRYGHQDLGKTAPQMVPLVQGYR 542
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
GY ++RR+IE F KL GV AT ALELG+D+G +DVTLHLGFPGS++SL QQAGR+
Sbjct: 543 GGYTKDERRKIEGSLFANKLLGVTATCALELGVDIGELDVTLHLGFPGSVSSLRQQAGRA 602
Query: 625 GRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
GR + SLA+ V F+ P+ ++F++ P +L E +D+ N V++
Sbjct: 603 GRGGKDSLAIMVLFQDPISEFFVRNPAELLHKAPEAAVLDSNNELVID------------ 650
Query: 685 SLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESE 744
+L F IG +H R ++
Sbjct: 651 ------------------------------TLADDGDGFPRIGL----AHDRPCRVVD-- 674
Query: 745 RYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYF 804
D + E + +E S++FF +++GA+Y+HQ YLV L+L + +A + Y+
Sbjct: 675 -----DSKGGEPYDSVEYSRSFFSLFQGAIYLHQARQYLVTRLDLGAHVAHTTPVKVNYY 729
Query: 805 TKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTV 864
T R+ +++V+ ++S+D+ T + CTV +GF + G+G + +
Sbjct: 730 TAARNNVEVNVT-----KRLEVSEDKHAHTGCVNVVCTV----YGFVKKQMGTGRVLERG 780
Query: 865 ELYLPKYSYESQAVWIQVPQSV-KAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLA 923
E LP Y ++A W+ V ++ + V E+ G+HA HALL VVP+++ C+ +D+
Sbjct: 781 ECSLPPLQYATRAFWLDVGETARRRVEEEGLDLEGGIHAVGHALLAVVPLFLLCDAADVD 840
Query: 924 PECPNPHDSRYFPERILLYDRHPGGTGVS 952
E PH SR P+RIL++DR PGG GVS
Sbjct: 841 CEHARPHHSRPQPQRILVFDRRPGGVGVS 869
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 116/190 (61%), Gaps = 5/190 (2%)
Query: 196 SDKSQLLPLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSAL-KSTGIS 254
++K + PL +E+L+ + Q V+ E + R + L K+AL +S G++
Sbjct: 92 AEKLRFDPLRALEYLKSLPIYEDQAVYSETLPGRSGEYEDTLRPLHPELKAALERSKGVT 151
Query: 255 KLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSS-ALYMFPTKALA 313
+L+ HQA +I A+ AG++V ++T TSSGKS+ +N+ V++A+ + ALY+FPTKALA
Sbjct: 152 RLFKHQALAIDAAAAGRHVALSTATSSGKSVVFNVSVIDAIVGPRPDAVALYLFPTKALA 211
Query: 314 QDQLRALLAMTKA---FDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYH 370
QDQLR+L + A + DGDT ++R + + A +++TNPDMLH S+LP H
Sbjct: 212 QDQLRSLKELVGASPYLSQRVRPMTLDGDTPFRERGAVVEEANIILTNPDMLHASVLPGH 271
Query: 371 GQFSRILSNL 380
+F RIL NL
Sbjct: 272 KKFRRILGNL 281
>gi|448365510|ref|ZP_21553890.1| hypothetical protein C480_03544 [Natrialba aegyptia DSM 13077]
gi|445655049|gb|ELZ07896.1| hypothetical protein C480_03544 [Natrialba aegyptia DSM 13077]
Length = 936
Score = 278 bits (711), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 228/783 (29%), Positives = 353/783 (45%), Gaps = 97/783 (12%)
Query: 196 SDKSQLLPL---EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTG 252
+D Q +P+ E++E + + V + ++ R A V + L L
Sbjct: 42 TDDRQNVPITGDELLETFPRARSRESDDVSILELPGRDASAVPNAEVLRPELADPLDD-- 99
Query: 253 ISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLE------ALSHDLSSSALYM 306
LY+HQA ++ A G+NV VAT T+SGK+ Y L + A ++A
Sbjct: 100 --DLYTHQAAALRALGRGENVCVATSTASGKTRIYALQIARHYLDARARGDGTDATAYVC 157
Query: 307 FPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKD-RMWLRDNARLLITNPDMLHMS 365
+PTKAL++DQ R L I + VYDGDT + D R +R+ A ++ITN ++ +
Sbjct: 158 YPTKALSRDQERELNDFYDTLGLDISVRVYDGDTERGDTRRHIREEADVIITNFAGVN-T 216
Query: 366 ILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRL 425
L H +++R LS L VV+DE+H Y G G H A I+RRL
Sbjct: 217 YLHDHDRWARFLSACEL-------------------VVVDESHTYTGVHGMHVAWIVRRL 257
Query: 426 CRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSC 485
R+ + Y +DP FV ++AT NP H L + ++ DGSP + VLWNP
Sbjct: 258 KRVLEY-YDADPQFVLTSATIGNPGAHSSSLVG-EPVTVVDEDGSPTGPRELVLWNPPPQ 315
Query: 486 LR--------SVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKL 537
R S + +T D +A E L + + H + + F SRKL
Sbjct: 316 AREESDEEHASGSSGDETPADGGEDAITDRVPATVEAPKLLSHLAYHDAQTLLFTPSRKL 375
Query: 538 CELVLSYTREILEETA-----PHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNA 592
EL + + + + P +I Y AG+ +R E G L GVA+TNA
Sbjct: 376 AELSVKRASKHRRDRSRYYANPDRGSAIEPYHAGHSRRNRHGTEHRLKTGLLDGVASTNA 435
Query: 593 LELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEK 652
LELGI+VG +D T+ LG+PG S WQQ GR+GR + +L+V VA LDQY + P+
Sbjct: 436 LELGINVGEMDATVQLGYPGQRQSFWQQLGRAGRGTKRALSVLVAGHRTLDQYVVNNPDY 495
Query: 653 LFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSG-------LSSGITTLK 705
L ++ +E +D +N V +HL+CAA E L DE + L + +
Sbjct: 496 LLETDVEDAVVDTENDAVFARHLLCAADE----LALDESDGSAAGFADRDRLERAVEMWR 551
Query: 706 NRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEV-----IDMQSNEVLEEI 760
G L+ L++ Y G + P +IS+ A E Y V +D + + +E +
Sbjct: 552 RAGRLAG--YLETGVS---YTGPPR-PQGSISLYATTGEEYAVELAEGVDERHDPEMEPL 605
Query: 761 EESKAFFQVYEGAVYMHQGHTYLVKELNLSS--KIALCQKADLKYFTKTRDYTDIHVSGG 818
E + +EGAV +H+G Y V ++ ++ + D+ Y+T+TR TD+ V
Sbjct: 606 AEERVLRDFHEGAVRLHEGKQYEVCAVDHTTPRPSVTLRPTDVDYYTRTR--TDVTVLDA 663
Query: 819 NNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAV 878
+ + I +L + L T + + +I P S E+Q
Sbjct: 664 VSEESRDIGSVRLHFGRGRVLVYHGTYDKVAVHGGQKKERMI----PTENPPLSMETQLC 719
Query: 879 WIQVPQSVK-AVVEQ-----------------NFSFRSGLHAASHALLHVVPIYVRCNFS 920
W++VP V+ A+VE+ + + GLHAA HA + V P+ + +
Sbjct: 720 WLEVPDRVETALVEKYREFSVPELDGGLAETAHLGYAGGLHAAEHATIGVAPLELMVDKR 779
Query: 921 DLA 923
DL
Sbjct: 780 DLG 782
>gi|448393362|ref|ZP_21567687.1| hypothetical protein C477_15845 [Haloterrigena salina JCM 13891]
gi|445663777|gb|ELZ16519.1| hypothetical protein C477_15845 [Haloterrigena salina JCM 13891]
Length = 914
Score = 277 bits (709), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 228/732 (31%), Positives = 346/732 (47%), Gaps = 114/732 (15%)
Query: 256 LYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPV----LEALSHDLSSSALYMFPTKA 311
LY+HQAE++ A +NV VAT TSSGK+ Y L + LEA + + ++A ++PTKA
Sbjct: 68 LYAHQAEALEALAREENVCVATSTSSGKTRIYALQIARNYLEARARNEDATAYVLYPTKA 127
Query: 312 LAQDQLRALLAMTKAFDASIDIGVYDGDTTQ-KDRMWLRDNARLLITNPDMLHMSILPYH 370
L++DQ R L + I + VYDGDT + +R +R+ A ++I+N ++ + L H
Sbjct: 128 LSRDQERELNDLFDQLGLEITVRVYDGDTERGSNRKRIREEADVIISNFAGVN-TYLHDH 186
Query: 371 GQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCS 430
+++R LS L VVIDE+H Y G G H A I+RRL R+
Sbjct: 187 DRWARFLSACDL-------------------VVIDESHTYTGVHGMHVAWIVRRLKRVLE 227
Query: 431 HVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVL 490
+ Y SDP FV ++AT NP EH L + S + ++ +DGSP + VLWNP R
Sbjct: 228 Y-YESDPQFVLTSATIGNPGEHSAALIDES-VTVVDDDGSPMGPRDLVLWNPPPRAREEG 285
Query: 491 NKS-----QTDMDDTRNAANKTSSPISE-------VSYLFAEMVQHGLRCIAFCRSRKLC 538
+ +++ + NA + + I E L + + + + + F SRKL
Sbjct: 286 SDERDEWRESEANGESNAGSDAADAIVERVPATVEAPRLLSHLTYNDAQTLLFTPSRKLA 345
Query: 539 ELVLSYTREILEE-----TAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNAL 593
EL + + + T P +I Y AG+ + R E G L GVA+TNAL
Sbjct: 346 ELSVKRASKHRHDNRRYYTNPDRGSAIEPYHAGHSRKKRHGTEHQLKTGVLDGVASTNAL 405
Query: 594 ELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKL 653
ELGI++G +D T+ LG+PG S WQQ GR+GR + +L+V VA LDQY + P+ L
Sbjct: 406 ELGINIGEMDATVQLGYPGQRQSFWQQIGRAGRGTKRALSVLVAEHRTLDQYVVNNPDYL 465
Query: 654 FKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGS-----GLSSGITTLKNRG 708
+S +E +D N V QHL CAA E L D+ G+ L I + G
Sbjct: 466 LESDVEDAVVDVDNDAVFAQHLRCAADE----LAIDDSDVGTLADRERLKRAIEMWRRAG 521
Query: 709 YLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEV-----IDMQSNEVLEEIEES 763
L L++ Y+G + P TIS+ A E YEV +D + + +E +
Sbjct: 522 QLRG--HLETGVS---YVGPPR-PQQTISLYATTGEEYEVDLADGVDERHDPGMEPLARE 575
Query: 764 KAFFQVYEGAVYMHQGHTYLVKELNLSS--KIALCQKADLKYFTKTRDYTDIHVSGGNNA 821
+ +EGAV +HQG Y V ++ S+ + D+ Y+T+TR TD+ V
Sbjct: 576 RVLRDFHEGAVRLHQGQQYEVVGVDHSAPRPSVTVRPTDVDYYTRTR--TDVTV------ 627
Query: 822 YATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYL------------P 869
L + ++ T FG R+ G +D V ++ P
Sbjct: 628 ---------LDAVSEESRGIGDFTLHFGRGRVLVYHG-TYDKVAVHGGEKKEQGIPTENP 677
Query: 870 KYSYESQAVWIQVPQSV-KAVVEQ-----------------NFSFRSGLHAASHALLHVV 911
E+Q W++VPQ V +A++E+ + + GLHAA HA + V
Sbjct: 678 PLEMETQLCWLEVPQYVERALIEKYRTFEVAELEDGLAETAHLGYAGGLHAAEHATIGVA 737
Query: 912 PIYVRCNFSDLA 923
P+ + + DL
Sbjct: 738 PLELMVDKRDLG 749
>gi|448383363|ref|ZP_21562625.1| DEAD/DEAH box helicase domain protein [Haloterrigena thermotolerans
DSM 11522]
gi|445659526|gb|ELZ12329.1| DEAD/DEAH box helicase domain protein [Haloterrigena thermotolerans
DSM 11522]
Length = 840
Score = 277 bits (708), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 224/725 (30%), Positives = 333/725 (45%), Gaps = 65/725 (8%)
Query: 257 YSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQ 316
+ HQA+++ A G+NV V T TSSGK+ Y L + D AL ++PTKAL++DQ
Sbjct: 74 WRHQADALAALERGENVCVTTSTSSGKTYVYALDIARRFRKDPDVRALLVYPTKALSRDQ 133
Query: 317 LRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRI 376
R L + + +GVYDGDT ++++ +R+ A ++ITN L+ + +H
Sbjct: 134 ERELNDLFDDLGLDVTVGVYDGDTKRREKSRIREEANVVITNFAGLNQYLEGHH------ 187
Query: 377 LSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSD 436
R AF +V+DEAHA+ G G H A ILRR R+ YG D
Sbjct: 188 ----RWAAFHADCD----------LLVVDEAHAWTGVSGMHAAWILRRARRVIE-WYGGD 232
Query: 437 PSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTD 496
P +V ++AT NP +H L +I DGSP ++ V W+P + + D
Sbjct: 233 PQYVLTSATIGNPADHAEALTG-EPATVIDEDGSPSGRRHLVFWDPPADGDAGEGGRDGD 291
Query: 497 MDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHL 556
+ +K + + E ++A HG+ + FC SRK EL + +E LE P L
Sbjct: 292 DEGDDWRPSKRPATV-EAPEVWAHCCYHGVPSLLFCDSRKGTELAVGRAQEFLE--TPSL 348
Query: 557 VDS----ICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPG 612
S Y AG+ RR E G L GVA T+ALE+GIDVG ID T+ LG+PG
Sbjct: 349 PYSGTADFAAYNAGHGKRSRRGTENRLKSGDLDGVATTSALEVGIDVGGIDGTVLLGYPG 408
Query: 613 SIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLE 672
S S WQ+ GRSGR ER +L+V+V LDQY +PE L + E +D +N+ V
Sbjct: 409 SRQSFWQRIGRSGRGEREALSVFVPSHSTLDQYVRNHPEYLLEEEPESAVVDLENNPVYL 468
Query: 673 QHLVCAALEHPLSLIYDEKYFGSG-LSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKM 731
QHL CAA E PL ++ G L + + G S A Y H
Sbjct: 469 QHLRCAAQELPLRREDAARFGGRDRLEQAVEYGRRTGDFEG-----SLAGGITYA-HRDR 522
Query: 732 PSHTISIRAIESERYEV-IDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKEL--N 788
P IS+ A + +EV + + + + I ++A+ +EGA +++G Y V EL +
Sbjct: 523 PQDEISLYASGGDSFEVRLAGEGSIDHQPIGRARAYRDYHEGATVLYRGDQYEVVELRED 582
Query: 789 LSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQ-LTKTTAQALACTVTTTW 847
Q ADL Y+T+++ T I Y T+I + + + TVT
Sbjct: 583 RPQPYVKLQTADLDYYTQSQRRTTI--------YDTEIRESRDVGDFRLNWGYGTVTVHH 634
Query: 848 FGFYRLWRGSGIIFDT-VELYLPKYSYESQAVWIQVPQSVKAVVEQNFS----------- 895
F + SG + +E +P +Q W +VP V+ V S
Sbjct: 635 ETFSKRDLESGDVRAVGLETGVPPLEMRTQLCWAEVPADVERAVTAAHSDYHNDECEELP 694
Query: 896 -----FRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTG 950
+ G+HA HA++ V P+ + + +DL N +YD GG G
Sbjct: 695 PRLHGYLGGIHAVEHAMIAVAPLELTVDAADLGGLATNRLPDGTDASGWFIYDGIEGGLG 754
Query: 951 VSKQV 955
S+++
Sbjct: 755 FSRRI 759
>gi|302553080|ref|ZP_07305422.1| LOW QUALITY PROTEIN: helicase [Streptomyces viridochromogenes DSM
40736]
gi|302470698|gb|EFL33791.1| LOW QUALITY PROTEIN: helicase [Streptomyces viridochromogenes DSM
40736]
Length = 663
Score = 276 bits (707), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 186/557 (33%), Positives = 282/557 (50%), Gaps = 30/557 (5%)
Query: 399 IRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELAN 458
+R+VVIDE H Y+G FG H A +LRRL RLC+ YGS P F+ ++AT+A P L
Sbjct: 24 LRYVVIDECHTYRGVFGSHVAQVLRRLRRLCAR-YGSSPVFLLASATAAEPAVAAGRLTG 82
Query: 459 LSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLF 518
L +E + +D SP + +F LW P T++ + A + ++ +E + L
Sbjct: 83 LPVVE-VADDASPRGELVFALWEP----------PLTELHGEKGAPVRRTA-TAEAADLL 130
Query: 519 AEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERD 578
++ G+R +AF RSR+ EL+ ++E L E L + YR GY+ E+RR +ER
Sbjct: 131 TDLTVQGVRSVAFVRSRRGAELISVISQERLSEVDRSLARRVAAYRGGYLPEERRALERA 190
Query: 579 FFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAF 638
G+L G+AATNALELGID+ +D + G+PG+ ASLWQQAGR+GR + +LAV VA
Sbjct: 191 LHSGELLGLAATNALELGIDISGLDAVVIAGYPGTRASLWQQAGRAGRSGQGALAVLVAR 250
Query: 639 EGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLS 698
+ PLD + + +PE LF P+E +D N VL HL AA E PL+ D FG
Sbjct: 251 DDPLDTFLVHHPEALFDQPVESTVLDPDNPYVLAPHLCAAAAELPLT-DEDLDLFGPASE 309
Query: 699 SGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLE 758
+ L+ L + + + E+ + IR +V++ + +L
Sbjct: 310 PLLPQLEAAKLLR------RRTRAWHWTRRERA-ADLADIRGAGGRPIQVVETGTGRLLG 362
Query: 759 EIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGG 818
++ + V+EGAV++HQG TYLV+ L+L +AL ++A Y T RD T I V
Sbjct: 363 TVDAGASHSTVHEGAVHLHQGRTYLVRSLDLEDSVALVEEAAPPYSTVARDTTSISVL-- 420
Query: 819 NNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAV 878
+L + + VT F R +G + +L LP + ++AV
Sbjct: 421 ETDVEIPWGDGRLCYGSVE-----VTNQVVSFLRRRLITGEVLGETKLDLPPRTLRTRAV 475
Query: 879 WIQVPQSVKAVVEQNFSFRSG-LHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPE 937
W V + N G LHAA HA + ++P++ C+ D+ H P
Sbjct: 476 WWTVTEDQLDRARINPEILGGALHAAEHASIGLLPLFATCDRWDIGGVSIPLHPDTLLPT 535
Query: 938 RILLYDRHPGGTGVSKQ 954
+ +YD HPGG G +++
Sbjct: 536 -VFVYDGHPGGAGFAER 551
>gi|448587808|ref|ZP_21649059.1| putative helicase [Haloferax elongans ATCC BAA-1513]
gi|445737425|gb|ELZ88960.1| putative helicase [Haloferax elongans ATCC BAA-1513]
Length = 812
Score = 276 bits (707), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 222/785 (28%), Positives = 346/785 (44%), Gaps = 108/785 (13%)
Query: 217 QGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVA 276
+GQ+V RKA V D L D L++ LYSHQAE+I +G NV VA
Sbjct: 26 EGQLVDTIADPPRKANTVPATDVLPDELGGLLEN----DLYSHQAEAIRELQSGNNVTVA 81
Query: 277 TMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVY 336
T TSSGK+ Y L + + AL+++PTKAL+ +Q R + + Y
Sbjct: 82 TSTSSGKTWVYTLYFCLQKMQNPDARALFLYPTKALSVNQERKVNDLFDQLGIDAVAETY 141
Query: 337 DGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIF 396
DGDT + +RD ++I+N ++ L H ++ I N L+A
Sbjct: 142 DGDTKNDRKKLIRDRVDVVISNFAGINQ-YLDSHMKWRDIFKNCELMA------------ 188
Query: 397 LFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMEL 456
IDE H Y G G H A ++RRL RL H YGSDP V STAT NPREH L
Sbjct: 189 -------IDECHTYTGVHGMHVAWVIRRLRRLLDH-YGSDPQLVCSTATIGNPREHSEHL 240
Query: 457 ANLSTLELIQNDGSPCAQKLFVLWNP----TSCLRSVLNKSQTDMDDTRNAANKTSSPIS 512
+ E+I DGSP ++ W P T L L + + RN+
Sbjct: 241 TG-AEFEIIDEDGSPHGRREVGFWQPPLQETGDLVGELEEDEILPSMRRNSD-------E 292
Query: 513 EVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDR 572
E + + ++ ++ + F SR+ E+ + E + Y AG R
Sbjct: 293 EAAGALVHLAKNDVQTLMFTDSRQGTEIGVKRAIEAARSHPDGRYIDVEPYHAGLSKRKR 352
Query: 573 RRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSL 632
R +E G++ GV +T+ALELGID+G +D T+ G+PG+ S WQ+ GR+GR SL
Sbjct: 353 RAVENQLNAGQVDGVISTSALELGIDIGSMDATVLAGYPGTRQSFWQRIGRAGRGTTDSL 412
Query: 633 AVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKY 692
+V+V +DQY + P+ + + +E ID N+ V +H++CAA E PL+ D K+
Sbjct: 413 SVFVPQSDAIDQYILNNPDYVLEENVEDAVIDLSNNPVYAKHILCAASERPLTEA-DTKW 471
Query: 693 FG--SGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVID 750
FG LS I + G L D LD A+ Y G + P IS+ A E+Y+V
Sbjct: 472 FGPRDRLSRAINMWQAAGQLVGD--LDRGAQ---YNGTAR-PQSGISMYATTDEQYDVRQ 525
Query: 751 MQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDY 810
+ +E +++ + + + + GA+ ++ G Y V+E+ + +I Y
Sbjct: 526 VDGEIDMEPLDKERVYREYHPGALVLYDGDQYEVQEV-VEDRI--------------NPY 570
Query: 811 TDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGII------FDTV 864
+ S N Y I ++T L + G Y+L G G + ++ +
Sbjct: 571 VTVERSNSAN-YTQAIHSKRITD-----LDVERSYDLGGGYQLCAGMGTVHINYSAYNVI 624
Query: 865 ELY------------LPKYSYESQAVWIQVPQSVKAVV---------------------- 890
++Y L S +Q +WI P+ + + V
Sbjct: 625 DMYTGEIVEPMIPIDLAPISLRTQVMWIAFPREIVSRVLNEIPRSSYLQPEESGEFASMG 684
Query: 891 EQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTG 950
E+ ++ GLH H ++ + P+ +R + SD+ H+ P ++D GG G
Sbjct: 685 EEEYTLAGGLHGGEHGMIKMAPLELRLDNSDMGGLSTLHHNEVGSP-VWFIHDAVEGGVG 743
Query: 951 VSKQV 955
+ V
Sbjct: 744 FAHSV 748
>gi|429193257|ref|YP_007178935.1| helicase family protein with metal-binding cysteine cluster
[Natronobacterium gregoryi SP2]
gi|448324459|ref|ZP_21513889.1| hypothetical protein C490_03828 [Natronobacterium gregoryi SP2]
gi|429137475|gb|AFZ74486.1| helicase family protein with metal-binding cysteine cluster
[Natronobacterium gregoryi SP2]
gi|445618891|gb|ELY72443.1| hypothetical protein C490_03828 [Natronobacterium gregoryi SP2]
Length = 900
Score = 276 bits (705), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 229/758 (30%), Positives = 354/758 (46%), Gaps = 101/758 (13%)
Query: 221 VHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTS 280
V V ++ R A V + L +S L LY+HQAE++ A G+NV VAT TS
Sbjct: 32 VTVLELPGRAAQTVPAAEGL----RSELAGPLAHDLYTHQAEALEALTDGENVCVATSTS 87
Query: 281 SGKSLCYNLPV----LEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVY 336
SGK+ Y L + LEA + + S+A ++PTKAL++DQ AL + I + VY
Sbjct: 88 SGKTRIYALQIARNYLEAQARGIESTAYLLYPTKALSRDQEGALNDLFDDLGLEITVRVY 147
Query: 337 DGDTTQ-KDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLI 395
DGDT + ++R +R+ A ++ITN ++ + L H +++R LS L
Sbjct: 148 DGDTERGENRRQIREEADVIITNFAGVN-TYLHDHDRWARFLSACDL------------- 193
Query: 396 FLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCME 455
VVIDE+H Y G G H A I+RRL R+ + Y +DP FV ++AT NP +H
Sbjct: 194 ------VVIDESHTYTGVHGMHVAWIVRRLKRVLEY-YDADPGFVLTSATIGNPGDHSAA 246
Query: 456 LANLSTLELIQNDGSPCAQKLFVLWNPTS-------CLRSVLNKSQTDMDD----TRNAA 504
L + + ++ DGSP + VLWNP R + T+ D+ T +A
Sbjct: 247 LID-EPVTVVDEDGSPRGPRDLVLWNPPPRDREREHDERDEWREENTEPDEDGATTTDAI 305
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVD-----S 559
+ + + + + H ++ + F SRKL EL + + + A + V+ +
Sbjct: 306 AERVPATVDAPRVLSHLTYHNVQTLLFSPSRKLAELSVKRASKHRHDNASYYVNPDRGSA 365
Query: 560 ICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQ 619
I Y AG+ + R E G L GVA+T ALELGID+G +D T+ LG+PG S WQ
Sbjct: 366 IEPYHAGHSRQKRHGTEHQLRNGLLDGVASTTALELGIDIGAMDATVQLGYPGQRQSFWQ 425
Query: 620 QAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAA 679
Q GR+GR +L+ VA LDQY + P+ L ++ +E +D N V QHL CAA
Sbjct: 426 QIGRAGRGRSRALSALVAEHRTLDQYVVSNPDYLLENDVEDAVVDVDNDAVFAQHLRCAA 485
Query: 680 LEHPLSLIYDEKYFGS-----GLSSGITTLKN----RGYLSSDPSLDSSAKIFEYIGHEK 730
E L E G+ L I + RGYL + S Y+G +
Sbjct: 486 DE----LAVGETDAGTFAERDRLKRAIEMWRRAGQLRGYLETGVS---------YVGPPR 532
Query: 731 MPSHTISIRAIESERYEV-----IDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVK 785
P ++S+ A E YEV +D + +E + + + +EGAV +HQG Y V
Sbjct: 533 -PQQSVSLYATTGEEYEVRLAEGVDDGHDPEMEPLAKERVLRDFHEGAVRLHQGKQYEVV 591
Query: 786 ELNLSS--KIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTV 843
+++ + Q D+ Y+T++R TD+ V + + ++ L + L
Sbjct: 592 DVDHDAPQPTVTLQPTDVDYYTRSR--TDVTVLDAVSERSREVGDFTLHFGQGRVLVYHG 649
Query: 844 TTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSV-KAVVEQ---------- 892
T + G + P + E+Q W++VPQ V +A++E+
Sbjct: 650 TYDQVAIH----GGQKQKQAIPTENPPLAMETQLCWLEVPQEVERALIEKYRDFSVPELE 705
Query: 893 -------NFSFRSGLHAASHALLHVVPIYVRCNFSDLA 923
+ + GLHAA HA + V P+ + + DL
Sbjct: 706 DGFAGTAHLGYAGGLHAAEHATIGVAPLELMVDKRDLG 743
>gi|448316627|ref|ZP_21506215.1| putative helicase [Natronococcus jeotgali DSM 18795]
gi|445607640|gb|ELY61519.1| putative helicase [Natronococcus jeotgali DSM 18795]
Length = 809
Score = 276 bits (705), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 216/762 (28%), Positives = 347/762 (45%), Gaps = 90/762 (11%)
Query: 235 EIPDALLDNTKSALKSTGI----SKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLP 290
E D L ++ +S L + + LYSHQA+++ A G NV VAT TSSGK+ Y L
Sbjct: 37 EASDGLFEDPESVLPADLADNLENDLYSHQADALAALQDGDNVSVATSTSSGKTWIYTLY 96
Query: 291 VLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRD 350
+ + AL+++PTKAL+ DQ +A+ + YDGDT + +RD
Sbjct: 97 FALLKQQNPDARALFLYPTKALSTDQEKAINDLFNDLGVDATAETYDGDTKSGRKPIIRD 156
Query: 351 NARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAY 410
++I+N ++ L H +++ + N LI VIDE+H Y
Sbjct: 157 KKDVVISNFAGIN-EYLSNHVKWNDVYGNCELI-------------------VIDESHTY 196
Query: 411 KGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGS 470
G G H A ++RRL R+ +H Y +DP V STAT NP+EH L + +I DGS
Sbjct: 197 TGVHGMHVAWVIRRLRRILNH-YDADPQVVCSTATIGNPKEHSESLTG-AEFTVIDKDGS 254
Query: 471 PCAQKLFVLWNPTSCLRSVLNKSQTD---MDDTRNAANKTSSPISEVSYLFAEMVQHGLR 527
P Q+ W P + ++ ++ + D R A SE + + A + + ++
Sbjct: 255 PHGQREIAFWQPPVDEENDGHRYISEDEVVPDIRKRAG------SEAARVTAHLGLNDVQ 308
Query: 528 CIAFCRSRKLCELVLSYTREILEETAPHLVDS---ICVYRAGYVAEDRRRIERDFFGGKL 584
+ F RSR+ E+ ++ H D + Y AG + RR +E G++
Sbjct: 309 TLTFTRSRQGTEIG---AKQAGTAAGDHPSDEYLRVKPYHAGLSKKKRRGVEHQLKSGEM 365
Query: 585 CGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQ 644
V T+ALELGID+G +D T+ G+PG+ S WQQ GR+GR SL+V++ +DQ
Sbjct: 366 DAVITTSALELGIDIGGVDATVLAGYPGTRQSFWQQVGRAGRGGSDSLSVFIPRNDAIDQ 425
Query: 645 YFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFG--SGLSSGIT 702
Y + P+ L +E +D +N+ V +H++CAA E PL+ D K+FG L ++
Sbjct: 426 YILDDPDYLLSDDVEDAVVDLENNAVYARHVLCAANESPLTED-DMKWFGPRDRLERAVS 484
Query: 703 TLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEE 762
K+ G + D LD A +Y G + P IS+ A E Y+V + +E IE+
Sbjct: 485 VWKDAGRMIGD--LDRGA---QYNGAPR-PQSDISMYATTDELYDVRCRNDDIDMEPIEK 538
Query: 763 SKAFFQVYEGAVYMHQGHTYLVKELNLS--SKIALCQKADLKYFTKTRDYTDIHVSGGNN 820
+A+ + GA+ M+ G Y V +++ Q+ + + +T T +H
Sbjct: 539 KRAYRDYHPGALIMYDGQQYEVTDIHEDRYQPYVEVQRVNTREYTITISDKRVH------ 592
Query: 821 AYATKISKDQLTKTTAQALACTVTTTWFGFYRL-WRGSGIIFDTVELYLPKYSYESQAVW 879
K S+D + TV + + R+ G V + LP S ++Q +W
Sbjct: 593 DLEVKESRDLGGGFSIYKGMGTVDVAYTQYKRMDIDGRNASSGMVPIDLPPVSLQTQLMW 652
Query: 880 IQVPQSVKAVVE----------------------QNFSFRSGLHAASHALLHVVPIYVRC 917
I++P + VE F+ GLH A H ++ + P+ +R
Sbjct: 653 IELPNRMLPEVEAAVNDEEYIEPSEDSEFAGMSPAQFTVAGGLHGAEHGMIKMAPLELRL 712
Query: 918 NFSDLA----PECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
+ SD+ P P +F ++D GG G S +
Sbjct: 713 DNSDMGGLSMPMHPETESPVWF-----IHDAVEGGVGFSYSI 749
>gi|448352268|ref|ZP_21541059.1| hypothetical protein C484_22058 [Natrialba taiwanensis DSM 12281]
gi|445631648|gb|ELY84877.1| hypothetical protein C484_22058 [Natrialba taiwanensis DSM 12281]
Length = 929
Score = 273 bits (698), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 231/795 (29%), Positives = 357/795 (44%), Gaps = 123/795 (15%)
Query: 196 SDKSQLLPL---EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTG 252
+D +P+ E++E + GS + V ++ R A V + L L +
Sbjct: 40 TDDRTAVPITGDELLETFPRARGSGD--ISVLELPGRDASTVSNAEVLRPELSGPLDN-- 95
Query: 253 ISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLE------ALSHDLSSSALYM 306
LY+HQA ++ A +NV +AT T+SGK+ Y L + A S D ++A
Sbjct: 96 --DLYAHQAAALSALSRDENVCIATSTASGKTRIYALQIARHYLDACARSGDADATAYVC 153
Query: 307 FPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKD-RMWLRDNARLLITNPDMLHMS 365
+PTKAL++DQ R L I + VYDGDT + D R +R+ A ++ITN ++ +
Sbjct: 154 YPTKALSRDQERELNDFYDTLGLDISVRVYDGDTERGDTRRQIRETADVIITNFAGVN-T 212
Query: 366 ILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRL 425
L H +++R LS L VVIDE+H Y G G H A I+RRL
Sbjct: 213 YLHDHDRWARFLSACDL-------------------VVIDESHTYTGVHGMHVAWIVRRL 253
Query: 426 CRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSC 485
R+ + Y +DP FV ++AT NP H L + ++ DGSP + VLWNP
Sbjct: 254 KRVLEY-YDADPQFVLTSATIGNPGAHSSSLVG-EPVTVVDEDGSPTGPRELVLWNPPPQ 311
Query: 486 LR--------SVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKL 537
R S + +T D +A E L + + H + + F SRKL
Sbjct: 312 AREDGDDERASGSSGDETPDDGGEDAITDRVPATVEAPKLLSHLTYHDAQTLLFTPSRKL 371
Query: 538 CELVLSYTREILEE-----TAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNA 592
EL + + + T P +I Y AG+ +R E G L GVA+TNA
Sbjct: 372 AELSVKRASKHRRDRSRYYTNPDRGSAIEPYHAGHSRRNRHGTEHRLKTGLLDGVASTNA 431
Query: 593 LELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEK 652
LELGI+VG +D T+ LG+PG S WQQ GR+GR + +L+V VA LDQY + P+
Sbjct: 432 LELGINVGEMDATVQLGYPGQRQSFWQQLGRAGRGTKRALSVLVAGHRTLDQYVVSNPDY 491
Query: 653 LFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSG-------LSSGITTLK 705
L ++ +E +D +N V +HL+CAA E L DE G+ L + +
Sbjct: 492 LLETDVEDAVVDTRNDAVFARHLLCAADE----LALDESDGGAAGFAERDRLERAVEMWR 547
Query: 706 NRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEV-----IDMQSNEVLEEI 760
G L+ L++ Y G + P ++S+ A E Y V D + + +E +
Sbjct: 548 RAGRLAG--HLETG---VSYTGPPR-PQGSVSLYATTGEEYAVELAEDADERHDPQMEPL 601
Query: 761 EESKAFFQVYEGAVYMHQGHTYLVKELNLSS--KIALCQKADLKYFTKTRDYTDIHVSGG 818
+ + +EGAV +H+G Y + ++ ++ + D Y+T+TR TD+ V
Sbjct: 602 AKERVLRDFHEGAVRLHEGRQYEICAVDHATPRPSVTLRPIDADYYTRTR--TDVTV--- 656
Query: 819 NNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELY----------- 867
L + ++ T FG R+ G +D V ++
Sbjct: 657 ------------LDAVSEESREIGPFTLHFGRGRVLVYHG-TYDKVAIHGGQKKERMIPT 703
Query: 868 -LPKYSYESQAVWIQVPQSVK-AVVEQ-----------------NFSFRSGLHAASHALL 908
P S E+Q W++VP V+ A++E+ + + GLHAA HA +
Sbjct: 704 ESPPLSMETQLCWLEVPDRVETALIEKYCEFSVPEMDGDLAETAHLGYAGGLHAAEHATI 763
Query: 909 HVVPIYVRCNFSDLA 923
V P+ + + DL
Sbjct: 764 GVAPLELMVDKRDLG 778
>gi|405982359|ref|ZP_11040681.1| hypothetical protein HMPREF9240_01687 [Actinomyces neuii BVS029A5]
gi|404390130|gb|EJZ85200.1| hypothetical protein HMPREF9240_01687 [Actinomyces neuii BVS029A5]
Length = 820
Score = 270 bits (691), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 220/749 (29%), Positives = 345/749 (46%), Gaps = 76/749 (10%)
Query: 236 IPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEA- 294
+P +L+D A + GI++ + HQ ++ A G+ VVAT T SGKSL LP L A
Sbjct: 66 VPRSLID----AYRGRGIARPWLHQVKAAEAIWRGQTTVVATGTGSGKSLSVWLPHLSAV 121
Query: 295 LSHDLSSS-----------ALYMFPTKALAQDQLRALLAMTKAFDA--SIDIGVYDGDTT 341
L+ D +S A+YM PTKALA DQ+ L + A I +G DGDT
Sbjct: 122 LAADQKTSSRISQFHARPCAIYMTPTKALAADQVAGLNELISAPSERLPIRVGPADGDTE 181
Query: 342 QKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRF 401
+ W+R++A ++ TNPD +H +LP ++ R+L +L LI
Sbjct: 182 ADVKSWVREHADVIATNPDYVHHVLLPSAQRWRRVLRSLNLI------------------ 223
Query: 402 VVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLST 461
V+DE H+Y+G G H A + R + +G++P+ F +AT A+P + ++
Sbjct: 224 -VVDELHSYRGIMGAHVAWTV-RRLVRLARRFGANPTVAFLSATMADPAQAAAHFLGIAP 281
Query: 462 LEL--IQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSP----ISEVS 515
++ I D +P +K F+LW P Q DD+ + + P + E
Sbjct: 282 EKVHSICEDTAPAGRKAFLLWRP----------KQVHTDDSEEDVDLDALPRRSTVVEAG 331
Query: 516 YLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRI 575
L AE+ Q G + + F RSR E V + + L P L+ +I YR GY+ E+RR +
Sbjct: 332 ELTAELAQAGQQTLTFVRSRGAAETVAAVASDYLSTRDPALMRAIAAYRGGYLPEERRAL 391
Query: 576 ERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVY 635
E ++ +A T+ALELGIDV +D T+ G+PG+ ASL QQ GR+GR + +
Sbjct: 392 EAALCKRQMRALATTSALELGIDVSGLDATITTGWPGTRASLQQQLGRAGRAGADGIGIL 451
Query: 636 VAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLI-YDEKYFG 694
+A E PLDQYF P+++F +E N V+ HL CAA E PL+ D+
Sbjct: 452 IAAENPLDQYFCDNPQQIFAG-VEESIFPTLNPYVVGPHLSCAAAEAPLTAADLDQLGVS 510
Query: 695 SGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN 754
L +T + G L + ++ E+ P + IR + ++ID +
Sbjct: 511 QQLVDQLTAI---GLLHK----REDSWVWNVTRPER-PWDLVDIRG-GGKPLQLIDANTG 561
Query: 755 EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIH 814
V+ +++E++A + GA+Y+HQG Y V L +AL + K T+ + +
Sbjct: 562 SVVGDVDEARADSVAHPGAIYVHQGRVYRV--LGREEDVALVEPGPAKLRTRPWEQHRVR 619
Query: 815 VSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIF-DTVELYLPKYSY 873
+ A + + ++ Y L R G+ F L LP+
Sbjct: 620 ILNETRQVADPSGLVDFFVGDVEVGSQIIS------YDLLRLPGLQFISENPLSLPERIL 673
Query: 874 ESQAVWIQVPQSVKAVVEQNFSFRSG-LHAASHALLHVVPIYVRCNFSDLAPECPNPHDS 932
+QAVW Q+ + A + G LH A HA + ++P+ C+ DL H+
Sbjct: 674 PTQAVWWQLSAAGMAELALPPEVLGGALHGAEHASIGILPLLANCDRWDLGGLSTVSHEQ 733
Query: 933 RYFPERILLYDRHPGGTGVSKQVTDMKMN 961
P + +YD GG G + M N
Sbjct: 734 SGKPT-VFVYDAQRGGAGFASYAYSMAGN 761
>gi|154508097|ref|ZP_02043739.1| hypothetical protein ACTODO_00590 [Actinomyces odontolyticus ATCC
17982]
gi|153797731|gb|EDN80151.1| DEAD/DEAH box helicase [Actinomyces odontolyticus ATCC 17982]
Length = 859
Score = 269 bits (688), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 193/607 (31%), Positives = 286/607 (47%), Gaps = 77/607 (12%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
+ R + + P + A G+ + HQ E++ A G + V+AT T SGKSL
Sbjct: 14 LPGRSGKIADWPQWVSPAVVDAWARRGVEHPWIHQREALDAVREGLDPVLATGTGSGKSL 73
Query: 286 CYNLPVLEALSHDLSSS----------ALYMFPTKALAQDQLRALLAM----TKAFDASI 331
P+L L SS ALY+ PTKALA DQL +L+++ K+ DA
Sbjct: 74 AAWTPILSDLVEAEDSSRISAIHRRPTALYLAPTKALAADQLASLMSLLGQDGKSADAQA 133
Query: 332 DIGV------------------YDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQF 373
G DGDT ++ + W R A L+++NPD LH +LP H ++
Sbjct: 134 SAGAEGSPSLVDERLRRVRATTVDGDTPREAKEWARAGADLILSNPDFLHYVMLPSHQRW 193
Query: 374 SRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVY 433
SR L++LRLI VIDEAH ++G G H AL++RRL R+ H+
Sbjct: 194 SRFLASLRLI-------------------VIDEAHHWRGVTGSHIALVVRRLLRVAHHL- 233
Query: 434 GSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKS 493
G+DP V +AT + L + I DGSP VLW + ++S
Sbjct: 234 GADPRVVMLSATVRDAAAVGHALTGRDAVA-ITEDGSPAGAHELVLWQGAI----MADES 288
Query: 494 QTDMD---DTRNAANKTSS---PIS------EVSYLFAEMVQHGLRCIAFCRSRKLCELV 541
+ D+ + +A T++ PI E + L V+ G R +AF RSR E V
Sbjct: 289 EVDISSFLEALDAPPGTATLKVPIVRRSAGVEAANLATAFVEEGARLLAFVRSRAGAEAV 348
Query: 542 LSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGH 601
+ R+ L + YR GY+ E+RR +E G + +A T+ALE+G+D+
Sbjct: 349 AAQVRDRLSARGSANAGRVGAYRGGYLPEERRALEEAIRTGGVRALATTSALEMGLDISG 408
Query: 602 IDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECC 661
+D T+ +G+PG+ ASL QQ GR+GR P +V +A PLD Y +++PE + +E
Sbjct: 409 LDATITVGWPGTRASLRQQIGRAGRAGAPGTSVLIASANPLDAYLVRHPEHILGE-VEAS 467
Query: 662 HIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAK 721
ID N VL H+ AA E P++ D YFG L L GYL P A
Sbjct: 468 VIDPSNPWVLAPHVAAAAAEIPIT-PSDITYFGQELRGVTERLVADGYLKHRP-----AG 521
Query: 722 IFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHT 781
F + PS +R + +++D + V+ I+++ A V+ GA+Y+HQG T
Sbjct: 522 YFWDATRAERPSDLTDLRGAAGD-VQIVDAATGTVVGTIDQASADAHVFPGAIYIHQGRT 580
Query: 782 YLVKELN 788
+ V L
Sbjct: 581 FHVLSLT 587
>gi|405979154|ref|ZP_11037499.1| hypothetical protein HMPREF9241_00222 [Actinomyces turicensis
ACS-279-V-Col4]
gi|404393305|gb|EJZ88361.1| hypothetical protein HMPREF9241_00222 [Actinomyces turicensis
ACS-279-V-Col4]
Length = 898
Score = 268 bits (686), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 187/597 (31%), Positives = 298/597 (49%), Gaps = 61/597 (10%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATM 278
+++ + I R E P + + A K+ G + +SHQ E++ A +G +VV+AT
Sbjct: 49 RLIDMHVIEGRAERTAEWPTWVALDVVEAWKARGALRPWSHQVEALDAIASGNDVVLATG 108
Query: 279 TSSGKSLCYNLPVLEALSHDLSS----------SALYMFPTKALAQDQLR---ALLAMTK 325
T SGKS P+L L + S + LY+ PTKALA DQ+ ALL++
Sbjct: 109 TGSGKSAPAWTPILSDLVNAEDSGRISQIRRRPTCLYISPTKALAADQMAHLCALLSVAP 168
Query: 326 AFDA--SIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLI 383
+ A + DGDT ++ + W R NA ++ TNPD LH +LP H +++R L++L+
Sbjct: 169 SGSALRQVHAVTADGDTPRETKDWARANADIIATNPDYLHYVMLPGHERWTRFLASLK-- 226
Query: 384 AFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFST 443
++VIDE H ++G G H +L++RRL R+ H+ G+DP + +
Sbjct: 227 -----------------YIVIDELHHWRGVVGAHISLVIRRLLRIAHHL-GADPIMIMLS 268
Query: 444 ATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDM------ 497
AT +P E E + NDGSP + LW R V ++++ D+
Sbjct: 269 ATIRDP-EAVGEAMTSRPCIGVTNDGSPASDHQLFLWQG----RLVPDEAEMDISAFLKA 323
Query: 498 ----DDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETA 553
+ A + S +E + L A M++ G + F RSR E V + R+ L
Sbjct: 324 VAGEETVVEAPMRRVSAQTEAASLTAAMIEKGANLLTFVRSRAGAESVAAQVRDQLSSHG 383
Query: 554 PHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGS 613
L + YR G++ E+RR +E G+L VA T+ALELG+D+ ++ T+ G+PG+
Sbjct: 384 SPLAGRVAAYRGGFLPEERRALESALRSGRLRAVATTSALELGLDISGLNATVTAGWPGT 443
Query: 614 IASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQ 673
ASLWQQ GR+GR ++V VA + P+D+Y + +P+++F +P+E IDA N VL
Sbjct: 444 RASLWQQIGRAGRAGAGGVSVLVASDNPMDEYLVHHPDQIF-APVEANVIDATNPWVLAP 502
Query: 674 HLVCAALEHPLSLIY----DEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHE 729
HL AA E PLSL D FG+ L + GYL P A + +
Sbjct: 503 HLCAAASEIPLSLERTDGEDLALFGASFPRLARQLADEGYLRERP-----AGWYWDATRQ 557
Query: 730 KMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKE 786
+ + +R S +++D ++ V+ ++ A ++ A+Y+HQG TY + E
Sbjct: 558 ERAADLTDLRG-GSGDVQIVDARTGAVIGTMDAGSADAHLFADAIYVHQGRTYHIVE 613
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 70/163 (42%), Gaps = 10/163 (6%)
Query: 792 KIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFY 851
+IAL ++ T+ + + ++ ++ + S D L + ++ + T +
Sbjct: 678 RIALAEEVRTPLRTRAKQRVSVSITSIDDTW---TSDDGLVTWSFGSVDVSTRVTDYDLL 734
Query: 852 RLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQ----NFSFRSGLHAASHAL 907
RL R +EL+LP ++ ++AVW ++ + + + N LHAA H
Sbjct: 735 RLPRLE--FIRNIELHLPTHTLPTKAVWYELSPAAQVQLRGLGIGNEDLSGTLHAAEHTS 792
Query: 908 LHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTG 950
+ ++P+ C+ DL HD P + ++D GG G
Sbjct: 793 IGLLPLLATCDRWDLGGLSTAEHDDTGLPT-VFVHDAFRGGAG 834
>gi|169237522|ref|YP_001690726.1| putative helicase [Halobacterium salinarum R1]
gi|167728749|emb|CAP15608.1| probable DEAD/DEAH box helicase [Halobacterium salinarum R1]
Length = 810
Score = 266 bits (680), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 214/743 (28%), Positives = 330/743 (44%), Gaps = 94/743 (12%)
Query: 256 LYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQD 315
LY+HQAE++ G NV VAT TSSGK+ Y L + + L+++PTKAL+
Sbjct: 61 LYTHQAEALRTLKDGSNVSVATSTSSGKTWVYALYFALRKLENPDARGLFLYPTKALSAG 120
Query: 316 QLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSR 375
Q AL + YDGDT Q + +R+ + I+N ++ L H ++
Sbjct: 121 QQEALNGLFDQLGVDARAETYDGDTDQDRKQIIRERVDVPISNFAGINQ-YLDAHQKWRA 179
Query: 376 ILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGS 435
+ +N L VVIDEAH Y G G H + ++RRL RL H YG+
Sbjct: 180 VFANCEL-------------------VVIDEAHTYSGVHGMHVSWVIRRLRRLLDH-YGA 219
Query: 436 DPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQT 495
DP V +TAT NP EH L + ++I +DGSP ++ W P L+ + T
Sbjct: 220 DPQLVCTTATIGNPAEHARLLTG-AAFDVIADDGSPHGRREIAFWQPP--LQDDGDVVDT 276
Query: 496 DMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH 555
D A K+++ SE + + A + H ++ + F SR+ E+ + + +E + H
Sbjct: 277 VGDSPLPAMRKSTA--SEAASVLAHLTNHDMQTLMFTDSRQGTEISV---KRAIENASAH 331
Query: 556 LVDSI----CVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFP 611
Y AG R E G++ GV +T+ALELGID+G +D T+ G+P
Sbjct: 332 PASRTDTEYAPYHAGLSQGKREATENALRAGEVDGVVSTSALELGIDIGTMDATVISGYP 391
Query: 612 GSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVL 671
G+ S WQ+ GR+GR SLAVYV +DQY + P L IE + N+ V
Sbjct: 392 GTRQSFWQRIGRAGRGTSNSLAVYVPETDGVDQYILDNPAYLLGDNIEDAVVTLSNNPVF 451
Query: 672 EQHLVCAALEHPLSLIYDEKYFG--SGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHE 729
QH++CAA E PL+ D +FG L + + G + SLD A+ Y G
Sbjct: 452 AQHVLCAASERPLTRA-DADWFGPEDRLERAVEMWADAGQMGG--SLDRGAQ---YSGTA 505
Query: 730 KMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNL 789
+ P ISI E+YEV +E +++ + + Q + GA+ ++ G Y V+
Sbjct: 506 R-PQSEISIYTTSGEQYEVRQTDGEIDMEPLDKERVYRQYHPGAIVVYDGQQYEVQ---- 560
Query: 790 SSKIALCQKADLKYF----TKTRDYTD-IHVSGGNNAYATKISKDQLTKTTAQALACTVT 844
A+ + Y T TR+YT IH +N + A + VT
Sbjct: 561 ----AVVEDTYRPYVEVESTNTRNYTQAIHTKTIDNLSVDRTRSLGNGYQLAAGVGRVVT 616
Query: 845 T-TWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVP----QSVKAVVEQN------ 893
+ + ++ G+ + V + LP S +Q +WI P V+A V N
Sbjct: 617 DYSAYNVVDMFEGT-VEEPMVPIDLPPISIRTQLMWISFPDRIIDRVRAAVPTNDYLTPD 675
Query: 894 ------------FSFRSGLHAASHALLHVVPIYVRCNFSDLA-------PECPNPHDSRY 934
++ GLH H ++ + P+ +R + DL PE +P +
Sbjct: 676 ADSDFVALGECEYTLAGGLHGGEHGMIKMSPLELRLDNDDLGGLSQLAHPEVESP---VW 732
Query: 935 FPERILLYDRHPGGTGVSKQVTD 957
F ++D GG G + + D
Sbjct: 733 F-----IHDAVEGGVGFAHSIYD 750
>gi|326482651|gb|EGE06661.1| DEAD/DEAH box helicase [Trichophyton equinum CBS 127.97]
Length = 910
Score = 265 bits (678), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 157/440 (35%), Positives = 239/440 (54%), Gaps = 36/440 (8%)
Query: 458 NLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYL 517
+ ++L DGSP +K F+ W QT D +A++ S I E + +
Sbjct: 304 GIDEVKLTDIDGSPSGRKEFLCW-------------QTPYKDPNDASSGRGSSIDESAKI 350
Query: 518 FAEMVQHGLRCIAFCRSRKLCELVLSYTR-EILEETAPHLVDSICVYRAGYVAEDRRRIE 576
F +++ G+R IAFCR RK CE +L+ + E P + + YR GY +DRR+IE
Sbjct: 351 FCQLILRGVRVIAFCRIRKQCEYLLNAIKDEFRTLDRPDVSRFVMGYRGGYSPQDRRKIE 410
Query: 577 RDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYV 636
R+ F GKL G+ ATNALELG+D+G +D + FP SI++ QQ+GR+GRR + SL++ V
Sbjct: 411 REMFEGKLLGIVATNALELGVDIGTLDAVITHEFPHSISNFRQQSGRAGRRNKDSLSILV 470
Query: 637 AFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSG 696
A + DQ++M P+ LF P +D +N VLE H+ CAA E P+ D YFGS
Sbjct: 471 AGQSAADQHYMNNPDDLFTKPNCGLLVDLENELVLEGHVQCAAFEMPIHPENDSAYFGSQ 530
Query: 697 LSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKM---PSHTISIRAIESERYEVIDMQS 753
L+ L + + D Y HE+ PS +SIR+I+ Y +ID +
Sbjct: 531 LAH----LADTRLVKDDMGF--------YHCHERFRPNPSKFVSIRSIDEGNYAIIDTTN 578
Query: 754 NE--VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYT 811
N V+EEI++++ FF VYEGA+Y HQG+TYLVKELN S + A +A + + T+ RD+T
Sbjct: 579 NRNVVIEEIDDARVFFTVYEGAIYFHQGNTYLVKELNTSKRFARVVRAHVDWITEQRDFT 638
Query: 812 DIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKY 871
++ +IS+ LT A + T +G+++ + G I D V L P
Sbjct: 639 NVDPI--ETEAIRRISR--LTDYRAFFGKIAIHTLVYGYFKKDK-KGRILDAVALDTPPI 693
Query: 872 SYESQAVWIQVPQSVKAVVE 891
S+ +W+ VP++ +++
Sbjct: 694 DKMSKGLWLDVPKTALEILK 713
>gi|448309023|ref|ZP_21498892.1| hypothetical protein C494_14798 [Natronorubrum bangense JCM 10635]
gi|445592047|gb|ELY46240.1| hypothetical protein C494_14798 [Natronorubrum bangense JCM 10635]
Length = 908
Score = 265 bits (677), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 216/793 (27%), Positives = 355/793 (44%), Gaps = 138/793 (17%)
Query: 211 RKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAG 270
R + + ++ A+ A V D L + AL + +L+ HQA+++ A AG
Sbjct: 27 RSSLTPDSAYIETIELPAKPADTVPTDDVL----QPALADSYPYELFRHQADALEALDAG 82
Query: 271 KNVVVATMTSSGKSLCYNLPVLEAL--------------SHDLSSSALYMFPTKALAQDQ 316
NV VAT TSSGK+ Y L + L + +S+AL ++P KAL DQ
Sbjct: 83 DNVTVATSTSSGKTHIYGLQIARNLLEAGVLNADGTRVSERNDASTALCVYPMKALTNDQ 142
Query: 317 LRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRI 376
+L + I + YDGDTT DR +R+ A +++TN L++ L +H ++SR
Sbjct: 143 QESLEELYDQLGLDIRVRTYDGDTT-GDRRAIREQADVILTNFAGLNV-YLEHHDKWSRF 200
Query: 377 LSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSD 436
S L L+A IDE+H Y G G + A ILRR+ R+ + +G D
Sbjct: 201 YSALDLVA-------------------IDESHTYTGIEGMNVAWILRRMQRVADY-WGGD 240
Query: 437 PSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRS-------- 488
P +V ++AT NP+EH EL N + + ++ +DGSP + VLWNP ++
Sbjct: 241 PQYVLTSATIGNPQEHSEELIN-APVTVVDDDGSPHGPRDIVLWNPPPRDKTRDTTPDEG 299
Query: 489 -----VLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLS 543
+ + S+ D +D A +S + +F + H +R + FC SRKL EL +
Sbjct: 300 PFSSELEDDSEADSEDEFVAERVPAS--VDAPKVFNHLTAHDVRTLLFCPSRKLTELSIQ 357
Query: 544 YTREILEETAPHLVDSICV-----YRAGYVAEDRRRIERDFFGGKLCGVAATNALELGID 598
E P D + Y AG R E F G L G+A T+ALELGID
Sbjct: 358 RA-EDHRRNNPRAYDRLPAVGREAYNAGLGRRTRHSREHQFKTGALTGLATTSALELGID 416
Query: 599 VGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPI 658
+G +D T+ +G+PG S WQ+ GR+GR SLAV V LDQY + +PE L ++ +
Sbjct: 417 IGTLDATVLMGYPGQRQSFWQRIGRAGREASRSLAVLVGDHRTLDQYILTHPEYLLETDV 476
Query: 659 ECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSG-LSSGITTLKNRGYLSSDPSLD 717
E +D N+ V H+ CA E L E + L + + + G++ D LD
Sbjct: 477 EDAVVDTSNNAVFATHVCCACDEIALDESDIETFADEDRLRAAVNMWREAGFV--DGYLD 534
Query: 718 SSAKIFEYIGHEKMPSHTISIRAIESERY----------EVIDMQSNEVLEEIEESKAFF 767
++ Y G + P +++ + Y E + + LE +++++A+
Sbjct: 535 AA---VHYSGPSR-PQTRVNLYGTNTTEYRLQLADDVDRERWGLPDDLDLEPVDQNRAYR 590
Query: 768 QVYEGAVYMHQGHTYLVKEL--NLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATK 825
+EGAV + G Y V + + I + + +Y+T++R+ ++
Sbjct: 591 DYHEGAVRLQNGQQYEVVTVDEDRPQPIIELEPVECEYYTRSRNKVNV------------ 638
Query: 826 ISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTV--ELYL--------------P 869
L + Q+ T FG RG+ ++ ++Y+ P
Sbjct: 639 -----LDADSEQSREINGFTLHFG-----RGTVLVHHHAYDQMYIGNSEPKQQLIPTDNP 688
Query: 870 KYSYESQAVWIQVPQSVKAVVEQNF-------------------SFRSGLHAASHALLHV 910
++Q W++VP++V+ + + + + +GLHAA HA +
Sbjct: 689 PILMDTQLCWVEVPEAVEKPLIRKYQDYGVETGVDSDQAGVAHLGYVAGLHAAEHATIQT 748
Query: 911 VPIYVRCNFSDLA 923
P+ +R + +DL
Sbjct: 749 APLELRVDKNDLG 761
>gi|448321202|ref|ZP_21510682.1| hypothetical protein C491_09469 [Natronococcus amylolyticus DSM
10524]
gi|445604062|gb|ELY58013.1| hypothetical protein C491_09469 [Natronococcus amylolyticus DSM
10524]
Length = 907
Score = 263 bits (673), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 236/757 (31%), Positives = 351/757 (46%), Gaps = 100/757 (13%)
Query: 221 VHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTS 280
V V +I R+A V + L L+ LY+HQAE++ A +N+ VAT TS
Sbjct: 42 VSVLEIPGREASTVPNDEVLRPELAGPLEY----DLYAHQAEALAALEHDENICVATSTS 97
Query: 281 SGKSLCYNLP----VLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVY 336
SGK+ Y L VLEA + S+A ++PTKAL++DQ R L I + VY
Sbjct: 98 SGKTRIYALQIARNVLEARARGERSTAYVLYPTKALSRDQERELNDFFDVLGLDISVRVY 157
Query: 337 DGDTTQKD-RMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLI 395
DGDT + R +R+ A ++I+N ++ + L H +++R LS L
Sbjct: 158 DGDTDPGETRRQIREGADVIISNFAGVN-TYLHDHDRWARFLSTCDL------------- 203
Query: 396 FLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCME 455
VV+DE+H Y G G H A ++RRL R+ + YG+DP F ++AT NP EH
Sbjct: 204 ------VVVDESHTYTGVHGMHVAWVIRRLKRVLEY-YGADPQFALTSATIGNPGEHSSA 256
Query: 456 LANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDM-------DDTRNAANKTS 508
L ++ ++ DGSP + VLWNP + R+ + S D D+ NA +
Sbjct: 257 LI-AESVTVVDEDGSPTGPRELVLWNPPA--RARADGSDGDSATAGGSEDEADNAVVERV 313
Query: 509 SPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVL----SYTREILEETA-PHLVDSICVY 563
E L + + H + + F SRKL EL + ++ R+ A P I Y
Sbjct: 314 PASVEAPKLLSHLCYHDAQTLLFTPSRKLAELSVKRASTHRRDRSRYYANPDRGSEIEPY 373
Query: 564 RAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGR 623
AG+ R E G L GVA+TNALELGI+VG +D T+ LG+PG S WQQ GR
Sbjct: 374 HAGHSRTKRHGTEHRLKTGALDGVASTNALELGINVGEMDTTVQLGYPGQRQSFWQQIGR 433
Query: 624 SGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHP 683
+GR R +L+V VA LDQY P+ L ++ +E +D N V +HL+CAA E
Sbjct: 434 AGRGTRRALSVLVAGHRTLDQYVANNPDYLLETDVEDAVVDVDNDAVFARHLLCAADELA 493
Query: 684 LSLIYDEKYFG--SGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAI 741
L D F L + G L+ L++ Y+G + P +IS+ A
Sbjct: 494 LKGA-DAGAFAERERLERAVEMWCRAGRLAG--HLETG---ISYVGPPR-PQGSISLYAT 546
Query: 742 ESERYEV-----IDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSS--KIA 794
E Y V +D + + +E + E + +EGAV +H+G Y V ++ S
Sbjct: 547 SGEEYAVELADGVDERHDPEMEPLAEERVLRDFHEGAVRLHEGRQYEVCAVDHDSPRPTV 606
Query: 795 LCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFY-RL 853
+ D +T+TR TD+ V + + +I L Q L + G Y R+
Sbjct: 607 TLRPTDADCYTRTR--TDVTVLDAVSEESREIGDFTLHFGRGQVL------VYHGTYDRV 658
Query: 854 WRGSGIIFDTVELYL----PKYSYESQAVWIQVPQSV-KAVVEQ---------------- 892
+G D E L P S E+Q W++VP ++ +A+VE+
Sbjct: 659 DVDNG---DPKEQGLPTENPPLSIETQLCWLEVPDALERALVERYREFSLEDEDGDGDED 715
Query: 893 ------NFSFRSGLHAASHALLHVVPIYVRCNFSDLA 923
+ + GLHAA HA + V P+ + + DL
Sbjct: 716 GIAETAHLGYAGGLHAAEHATIGVAPLELMVDKRDLG 752
>gi|288870553|ref|ZP_06114534.2| ATP-dependent RNA helicase, DEAD/DEAH box family, partial
[Clostridium hathewayi DSM 13479]
gi|288866697|gb|EFC98995.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
hathewayi DSM 13479]
Length = 390
Score = 263 bits (673), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 151/404 (37%), Positives = 224/404 (55%), Gaps = 35/404 (8%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+++ + R A P L + + L+ G+ LY HQAE + +L G+NVV+ T T
Sbjct: 18 IIYRRTMPERSARYAGFPAELPEELREYLQKNGVRGLYIHQAEMFLRALKGENVVITTST 77
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDAS-IDIGVYDG 338
+SGK+L + LPV+E + + + A++++PTKALA DQ RA+L + F + I GVYDG
Sbjct: 78 ASGKTLGFLLPVIEEILRNPLARAVFIYPTKALASDQYRAILPYIEYFGKNRISAGVYDG 137
Query: 339 DTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLF 398
DT +R +R A +++TNP+M++ + LP H +F IF
Sbjct: 138 DTPAGERSRIRKEANIILTNPEMVNGAFLPNHSKFG-----------------FDFIFAN 180
Query: 399 IRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELAN 458
++FVVIDE H Y+G FG H A + RRL R+C + YGS P F+ S+AT ANP E E+
Sbjct: 181 LKFVVIDELHTYRGVFGSHLANVFRRLHRICRY-YGSSPVFLCSSATIANPVELAEEICG 239
Query: 459 LSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLF 518
+ I+ DGSP A++ ++L P L D + ++ ++ + L
Sbjct: 240 RKFVR-IEWDGSPAAERTYLLIKPPKIL----------GHDKKYYGQVQATAVA--AELI 286
Query: 519 AEMVQHGLRCIAFCRSRKLCELVLSYTREILE-ETAPHL--VDSICVYRAGYVAEDRRRI 575
E+V+ IAF RSR+ E++L R+ LE E+A + D I YR GY +R+ I
Sbjct: 287 PELVEQRKNFIAFARSRRNVEVILKEARDRLEAESALNASQADKISGYRGGYTPAERKEI 346
Query: 576 ERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQ 619
E G LCG+ +TNALELGID+G ID T+ G+PG+ AS WQ
Sbjct: 347 EHKMVTGALCGLVSTNALELGIDIGKIDATVLAGYPGTRASFWQ 390
>gi|448650478|ref|ZP_21680202.1| ATP-dependent helicase, partial [Haloarcula californiae ATCC 33799]
gi|445772234|gb|EMA23281.1| ATP-dependent helicase, partial [Haloarcula californiae ATCC 33799]
Length = 665
Score = 262 bits (670), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 178/624 (28%), Positives = 284/624 (45%), Gaps = 54/624 (8%)
Query: 354 LLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGA 413
+L+ D LH+S LPY + +T +F + V+IDE H Y+G
Sbjct: 18 VLLATIDQLHLSFLPY----------------AHLTDHWRWLFQQLETVIIDEVHTYRGY 61
Query: 414 FGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLST--LELIQNDGSP 471
FG H ALI RRL RL H YG DP ++ +AT NP +H + T L+ ND S
Sbjct: 62 FGSHAALIFRRLNRLLDH-YGKDPQYICCSATIGNPVDHAAAVTGRPTDSFTLVDNDTSA 120
Query: 472 CAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVS---------------- 515
K +V WNP R + S D+D+ + + + E +
Sbjct: 121 SGDKQWVFWNPPQKDRE--DDSTADVDEETASTQQGAGQAGETTATQDDSDVGGERLSQH 178
Query: 516 ----YLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LVDSICVYRAGYVAE 570
+FA++V G + + F +R+ E + + L H + DS+ Y A +E
Sbjct: 179 VESVRIFADLVTRGYQTLVFTAARQGTEQYVDWADSKLRSRGEHDIADSVHAYHAALESE 238
Query: 571 DRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERP 630
RR +E G + G+ +T ALELGID+G +D + G+PG+ S +Q+AGR+GR +
Sbjct: 239 RRRELEAGLKSGDIRGLWSTRALELGIDIGSLDAVILDGYPGTGMSTFQRAGRAGRGDDS 298
Query: 631 SLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDE 690
L + V + PLDQY +K PE+LF+ E ++ N L +HLVCAA +H LS DE
Sbjct: 299 CLVIMVGSDNPLDQYLLKEPEQLFEGGAEQAAVNPSNRSALPEHLVCAADDHYLSPD-DE 357
Query: 691 KYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVID 750
+YFG L + L G L + ++ ++ + T IR I+ E +++D
Sbjct: 358 QYFGGALPEMVDQLTAEGRLKR----TNEEQVRWEAANDDIQIQT-DIRNIDEEEIKLVD 412
Query: 751 MQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDY 810
E+L +E A + A+YM+ +Y V EL+L + A + + +T+
Sbjct: 413 RNRGEILGSLERDAALRDAHPNAIYMYDKQSYKVVELDLEERTAYLESIETSEYTRALRE 472
Query: 811 TDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPK 870
++ V+ + K + + K T +L T + Y R E LP
Sbjct: 473 KEVTVNDTLDTRTLKFDGEDM-KATLGSLTVRNQITGYLRYSSPRDESPSEHEFETPLPP 531
Query: 871 YSYESQAVWIQVPQSVK----AVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPEC 926
+ ++ +VPQ ++ V+ + SGLHA HAL+ + P V C+ D+
Sbjct: 532 SEIATTGLFFEVPQKIERKMLKRVDSPEQYLSGLHAIEHALISLYPSEVLCDRGDIGGLS 591
Query: 927 PNPHDSRYFPERILLYDRHPGGTG 950
H + + ++D +PGG G
Sbjct: 592 TVSH-PQTVGGTVFVHDGYPGGAG 614
>gi|435849570|ref|YP_007311758.1| helicase family protein with metal-binding cysteine cluster
[Natronococcus occultus SP4]
gi|433675778|gb|AGB39968.1| helicase family protein with metal-binding cysteine cluster
[Natronococcus occultus SP4]
Length = 907
Score = 260 bits (664), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 232/806 (28%), Positives = 355/806 (44%), Gaps = 110/806 (13%)
Query: 205 EMVEHL-RKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAES 263
E++E R G+ V ++ A+ A V +AL + AL L+SHQAE+
Sbjct: 20 ELIETFPRTGLTPGSDSVERIELPAKPAETVSAAEAL----RPALAEPYPHDLFSHQAEA 75
Query: 264 IMASLAGKNVVVATMTSSGKSLCYNLP---------VLE-----ALSHDLSSSALYMFPT 309
+ A G++V VAT T+SGK+ Y L VLE A + +S+AL ++PT
Sbjct: 76 LGALADGEDVTVATSTASGKTHVYGLQIARNLLESGVLEPDGSRAADRNDASTALCLYPT 135
Query: 310 KALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPY 369
KAL +DQ AL + + + +YDGDTT DR +R+ A +++TN L++ L +
Sbjct: 136 KALTKDQRDALEGLYDRLGLDVRVRIYDGDTT-GDRRAIRETADVILTNFAGLNV-YLEH 193
Query: 370 HGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLC 429
H ++SR S L L+A IDE+H Y G G H A I RRL R+
Sbjct: 194 HDRWSRFYSALDLVA-------------------IDESHTYTGIEGMHAAWICRRLRRVV 234
Query: 430 SHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSV 489
+ +G +P +V ++AT NP EH EL + + + ++ +DGSP + VLWNP R+
Sbjct: 235 DY-WGGNPQYVLTSATIGNPGEHSRELID-APVTVVDDDGSPRGPREIVLWNPPPRDRTR 292
Query: 490 LNKSQTDMDDTRNAANKTSS--------PIS-EVSYLFAEMVQHGLRCIAFCRSRKLCEL 540
+S + + + P S + +F + +R + FC SRK EL
Sbjct: 293 TQESPAEDAVADADEAEDADADDVAERVPASVDAPKVFDHLTSRDVRTLLFCPSRKRTEL 352
Query: 541 VLSYTREILEETAPHLVDSICV-----YRAGYVAEDRRRIERDFFGGKLCGVAATNALEL 595
+ E P D Y AG + RR ER F G L G+A T+ALEL
Sbjct: 353 AVQRADE-HRRANPRAHDRSAAGGREPYHAGLGRDTRRVRERRFKTGSLTGLATTSALEL 411
Query: 596 GIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFK 655
GIDVG +D T+ G+PG + WQ+ GR+GR SLAV V LDQY +++PE L +
Sbjct: 412 GIDVGGLDATVLAGYPGQRQAFWQRVGRAGRGGSRSLAVLVGDHRTLDQYVLEHPEFLLE 471
Query: 656 SPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFG-----SGLSSGITTLKNRGYL 710
+ +E +D N V H++ AA E + DE G L + + G
Sbjct: 472 TDVEDAVVDTSNDAVFATHVLAAADE----IALDEADIGRFADEERLRDAVRMWREAG-- 525
Query: 711 SSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERY----------EVIDMQSNEVLEEI 760
SLD + + G + P + + + Y E + LE I
Sbjct: 526 ----SLDGVLEAGVHYGGPRRPQTRVDLYGTDDSTYRLQLAPGVDNETWGLPEELDLEPI 581
Query: 761 EESKAFFQVYEGAVYMHQGHTYLVKEL--NLSSKIALCQKADLKYFTKTRDYTDIHVSGG 818
+ S+A+ +EGAV +H G + V + + + + D +Y+T+TR + +
Sbjct: 582 DRSRAYRDYHEGAVRLHGGQQFEVVAVDEDRPRPVIELEPVDREYYTRTRSQVTVLDAES 641
Query: 819 NNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAV 878
+ + + T T G RG V P ++Q
Sbjct: 642 ERSREVNGFELHFGRGTVLVHYDTYDEVAIGNGETKRGG------VPTESPPIRMDTQLC 695
Query: 879 WIQVPQSV-KAVVEQ------------------NFSFRSGLHAASHALLHVVPIYVRCNF 919
W++VP V +A+V + + + +GLHAA HA + V P+ +R +
Sbjct: 696 WLEVPADVERALVRKYRDYGVETGVGPDEDVGPHLGYVAGLHAAEHATIQVAPLELRVDK 755
Query: 920 SDLAPECPNPHDSRYF-PERILLYDR 944
DL DS Y P+ L DR
Sbjct: 756 HDLGGLSTLVMDSHYARPDHDELADR 781
>gi|452207368|ref|YP_007487490.1| probable DEAD/DEAH box helicase [Natronomonas moolapensis 8.8.11]
gi|452083468|emb|CCQ36773.1| probable DEAD/DEAH box helicase [Natronomonas moolapensis 8.8.11]
Length = 817
Score = 258 bits (658), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 217/782 (27%), Positives = 344/782 (43%), Gaps = 90/782 (11%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATM 278
Q+ E + AR A V + L D +L + LY HQA+ + + +N+VV T
Sbjct: 27 QVTASEHVPARDADTVPAEEVLRDKLADSLNN----DLYRHQAKGLASLANDENIVVTTS 82
Query: 279 TSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDG 338
TSSGK+ Y L + + S+AL ++P KAL +DQ R L +D YDG
Sbjct: 83 TSSGKTRIYALQIARNQLDNPDSTALCIYPMKALTRDQERTLNDRLAEWDVDTRTEAYDG 142
Query: 339 DTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQ---FSRILSNLRLIAFSLVTTEVYLI 395
DT Q + +R NA ++TNP L++ LP H +SR +NL LI
Sbjct: 143 DTKQDLKRDIRSNADTILTNPAGLNV-YLPRHNTDNGWSRFYNNLELI------------ 189
Query: 396 FLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCME 455
V+DEAH Y G+ G H A ILRRL RL + Y +DP FV +TAT NP EH
Sbjct: 190 -------VVDEAHQYSGSMGTHVAWILRRLRRLLKY-YNADPQFVLTTATIGNPAEHATR 241
Query: 456 LANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTS-SPISEV 514
L + +I DGSP ++ VLW P +++ +MD + + S E
Sbjct: 242 LTS-EEFTVIDEDGSPHGKRDIVLWKPPIDDKALREAEAYNMDPSEGGLEEFRISTGEEA 300
Query: 515 SYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRR 574
+ + A + + + + FC +R+ E+ + + Y G RR
Sbjct: 301 AKVTAHLAINERQTLQFCSARQGTEIAAQKIGGAARDHPRNYHVDTKAYHGGLGKRTRRG 360
Query: 575 IERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAV 634
IE G + VA+TNALELGID+G ID T+ G+PG+ S WQQ GR+GR + +L+V
Sbjct: 361 IEAQLQDGVVDAVASTNALELGIDIGGIDATVTSGYPGTRQSFWQQIGRAGRGQTDALSV 420
Query: 635 YVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFG 694
V +D Y + P LF+ +E + +N +V HL AA E PL+ D G
Sbjct: 421 LVGGADAMDSYILDNPSYLFEDDVEDAVVSIENEQVYADHLCVAAKERPLT-DEDAGILG 479
Query: 695 SG--LSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQ 752
L+ ++ + G L LD+ Y+G + P ISI +Y + +
Sbjct: 480 QEDRLAEMVSMWQEAGVLERGVDLDNG---VHYMGDSR-PESRISIYDTSGRQYLINCID 535
Query: 753 SNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIA--LCQKADLKYFTKTRDY 810
+ + + +A+ ++GA+++H G Y V E+ ++ L ++ +T+T
Sbjct: 536 GEIDHDPVTKERAYRDYHKGALFLHDGEQYEVVEVEHDTRTPRILVEERGTGRYTQT--L 593
Query: 811 TDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGF------YRLWRGSGIIFDTV 864
+D +S L +Q L T WFG Y + I +
Sbjct: 594 SDKRIS-------------NLRPEMSQDLGDGY-TLWFGRANVDIDYAQYLVHNISTGEI 639
Query: 865 E-----LYLPKYSYESQAVWIQVP----------------------QSVKAVVE-QNFSF 896
E P S +++ +W+ +P ++ + E + +++
Sbjct: 640 ESGPHPTGSPPLSLDTELMWVSLPSDHLSTTISRLDQPLLEPTKHAEADTGLTEPERYTY 699
Query: 897 RSGLHAASHALLHVVPIYVRCNFSDLAP-ECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
G+HAA H ++ + P+ + + SD+ P D R ++D GG G S+ +
Sbjct: 700 GGGIHAAEHGIIQLAPLELMIDNSDIGGLSTPRHRDERIPGPVWFVHDGIDGGIGFSRAI 759
Query: 956 TD 957
D
Sbjct: 760 YD 761
>gi|448359624|ref|ZP_21548274.1| hypothetical protein C482_16843 [Natrialba chahannaoensis JCM
10990]
gi|445642259|gb|ELY95328.1| hypothetical protein C482_16843 [Natrialba chahannaoensis JCM
10990]
Length = 950
Score = 257 bits (656), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 231/811 (28%), Positives = 355/811 (43%), Gaps = 148/811 (18%)
Query: 197 DKSQLLPL---EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGI 253
D Q +P+ E+ E + + V ++ R+A V + L L+
Sbjct: 22 DDQQAIPITGEELRETFPRAGARDSGDISVLELPGREAATVPNSNVLRPELAEQLEH--- 78
Query: 254 SKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPV----LEALSHDLSS-------- 301
LY+HQAE++ A GKN+ VAT T+SGK+ Y L + L+A +
Sbjct: 79 -DLYAHQAEALEALECGKNICVATSTASGKTRIYALQIARHYLDARERAAETGAGKGRQN 137
Query: 302 -------------SALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKD-RMW 347
+A +PTKAL++DQ R L I + VYDGDT + + R
Sbjct: 138 GGEKTGAVSGPTPTAYICYPTKALSRDQERELNDFYDDLGLDITVRVYDGDTERGETRRQ 197
Query: 348 LRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEA 407
+R+ A ++ITN ++ + L H +++R S L VVIDE+
Sbjct: 198 IREEADIIITNFAGVN-TYLHDHDRWARFFSACDL-------------------VVIDES 237
Query: 408 HAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQN 467
H Y G G H A I+RRL R+ + Y +DP F+ ++AT NP H L + + +I
Sbjct: 238 HTYTGVHGMHVAWIIRRLKRVLA-SYDADPQFILTSATIGNPGAHSSTLID-DQVTVIDE 295
Query: 468 DGSPCAQKLFVLWNPTSCLRSVLNKSQTDMD--DTRNAANKTSSPISEVSYLFAEMVQHG 525
DGSP + VLWNP S+ D D +A E L + + H
Sbjct: 296 DGSPTGPRELVLWNPPP------QSSEKDGDRAGAEDAVTDRVPATVEAPRLLSHLTYHD 349
Query: 526 LRCIAFCRSRKLCELVLSYTREILEE-----TAPHLVDSICVYRAGYVAEDRRRIERDFF 580
+ + F SRKL EL + + + T P +I Y AG+ +R E
Sbjct: 350 AQTLLFTPSRKLAELSVKRAAKHRRDRSRYYTNPDRGSAIEPYHAGHSRRNRHGTEHQLK 409
Query: 581 GGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEG 640
G L GVA+TNALELGI+VG +D T+ LG+PG S WQQ GR+GR + +L+V VA
Sbjct: 410 TGVLDGVASTNALELGINVGEMDATVQLGYPGQRQSFWQQIGRAGRGSKRALSVLVAGHR 469
Query: 641 PLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSG---- 696
LDQY + E L ++ +E +D +N V QHL+CAA L DE G+G
Sbjct: 470 TLDQYVVNNSEYLLENDVEDAVVDTENDAVFAQHLLCAA----AELALDESDAGAGGLAD 525
Query: 697 ---LSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEV----- 748
L + + G L+ L++ Y G + P +IS+ A E Y V
Sbjct: 526 RERLEQAVEMWRRAGKLTG--HLETGVS---YTGPPR-PQRSISLYATTGEEYTVELADG 579
Query: 749 IDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSS--KIALCQKADLKYFTK 806
+D + + +E + E + +EGAV +H+G Y V ++ ++ + D+ Y T+
Sbjct: 580 VDERHDPEMEPLAEERVLRDFHEGAVRLHEGQQYEVCAVDHTTPRPSVTLRPTDVAYHTR 639
Query: 807 TRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGII----FD 862
TR TD+ V L + ++ T FG RG ++ +D
Sbjct: 640 TR--TDVTV---------------LDAVSEESREIGTFTLHFG-----RGRVLVYHDAYD 677
Query: 863 TVELYL------------PKYSYESQAVWIQVPQSVKAVVEQNF---------------- 894
V ++ P S E+Q W++VP+ V++ + + +
Sbjct: 678 EVAIHGGKKQAQQLPTGNPPLSMETQLCWLEVPERVESTLVERYRDFSVPELDSDLADTA 737
Query: 895 --SFRSGLHAASHALLHVVPIYVRCNFSDLA 923
+ GLHAA HA + V P+ + + DL
Sbjct: 738 HLGYAGGLHAAEHATIGVAPLELMVDKRDLG 768
>gi|448643556|ref|ZP_21678853.1| putative helicase [Haloarcula sinaiiensis ATCC 33800]
gi|445758277|gb|EMA09594.1| putative helicase [Haloarcula sinaiiensis ATCC 33800]
Length = 829
Score = 256 bits (653), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 194/641 (30%), Positives = 312/641 (48%), Gaps = 49/641 (7%)
Query: 254 SKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALA 313
+ LYSHQAE+I G+NV VAT TSSGK+ Y+L + + AL+++PTKALA
Sbjct: 68 NDLYSHQAEAISRLADGENVTVATSTSSGKTWIYSLYYALLKQQNDDARALFLYPTKALA 127
Query: 314 QDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQF 373
DQ + ++ + YDGDT R +RD ++I+N M+I
Sbjct: 128 ADQENEVNSLFEELGVDAVAEPYDGDTDTDRRPIIRDQRDVVISN--FAAMNIY------ 179
Query: 374 SRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVY 433
L++ L A L E+ +VIDE H Y G G H + ++RRL RL + +
Sbjct: 180 ---LNDDMLWADLLANCEL---------LVIDECHTYTGIHGMHVSWVIRRLRRLLAE-H 226
Query: 434 GSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNP--TSCLRSVLN 491
G+DP V STAT NP+EH L + ++ DGSP + W P TS +V
Sbjct: 227 GADPQIVCSTATIGNPKEHSEALVG-TDFSVVDEDGSPRGAREIAFWTPPATSDEGAVAE 285
Query: 492 KSQTDM-DDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILE 550
++ + R ANK E + + A + +G++ + F RSR+ EL +
Sbjct: 286 VDDAELVPEIRRGANK------EAAEVAAHLGLNGVQSLQFTRSRQETELGAQFAGRAAG 339
Query: 551 ETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGF 610
+ ++ Y AG R+ E F G + V +T+ALELGID+G ID T+ G+
Sbjct: 340 DHPSGGYLNVAQYHAGLSKPKRKETETKFKRGDVDTVISTSALELGIDIGGIDATVLAGY 399
Query: 611 PGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKV 670
PG+ S WQ+ GR+GR +L+++V +DQY + P L + +E +D NH V
Sbjct: 400 PGTRQSYWQRVGRAGRGGSDALSLFVPRGEAMDQYILDNPGFLLEDDVEDAVVDLSNHAV 459
Query: 671 LEQHLVCAALEHPLSLIYDEKYFGSG--LSSGITTLKNRGYLSSDPSLDSSAKIFEYIGH 728
+H++CAA E PL+ D +FG L + + G + D LD A+ Y G
Sbjct: 460 YAKHVLCAADERPLTR-EDADWFGPEERLERAVQMWSDAGQMEGD--LDRGAQ---YNGP 513
Query: 729 EKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELN 788
+ P IS+ A E++ V + + +E +++ +A+ + GA+ ++ G Y V E N
Sbjct: 514 PR-PQQGISMYATGDEQFRVQRVDGDIDMEPLDKERAYRDYHPGALVLYDGKKYEVVEFN 572
Query: 789 --LSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTT 846
+ + Q+A+ + +T+T+ +D VS + + S+D A TV+
Sbjct: 573 EDRPTPVVKLQRANTQNYTQTQ--SDKTVS----DVSVQRSRDLGNGYRICAGMGTVSVH 626
Query: 847 WFGFYRLWRGSG-IIFDTVELYLPKYSYESQAVWIQVPQSV 886
+ + + +G I+ + LP SY +Q +WI+ P ++
Sbjct: 627 YNSYTIVDPNTGEIVGMPQQTGLPPISYHTQLMWIEFPHNI 667
>gi|452207899|ref|YP_007488021.1| probable DEAD/DEAH box helicase [Natronomonas moolapensis 8.8.11]
gi|452083999|emb|CCQ37331.1| probable DEAD/DEAH box helicase [Natronomonas moolapensis 8.8.11]
Length = 932
Score = 255 bits (651), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 222/791 (28%), Positives = 357/791 (45%), Gaps = 125/791 (15%)
Query: 211 RKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAG 270
R G+G V I AR+A V + +LD S L +LYSHQA ++ A A
Sbjct: 20 RAGLGPDSASASVLTIPAREAETVPA-ETVLD---SVLADRYPFELYSHQAAALRALRAD 75
Query: 271 KNVVVATMTSSGKSLCYNLPV--------------LEALSHDLSSSALYMFPTKALAQDQ 316
++V V+T T+SGK+ Y + + A + ++AL ++PTKAL DQ
Sbjct: 76 EHVCVSTSTASGKTHVYGVEIARRLLDAGVLAPDGTRAADRNEGATALCLYPTKALTNDQ 135
Query: 317 LRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRI 376
AL A+ + I + VYDGDT +R +R++A +++TN L++ L +H ++SR
Sbjct: 136 RDALDALYEELGLDIRVRVYDGDTPTAERRSIREDADVVLTNVQALNV-YLEHHDRWSRF 194
Query: 377 LSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSD 436
S L ++A +DE+H Y G G H A ILRRL R+ + +G D
Sbjct: 195 YSALEVVA-------------------VDESHTYTGVQGMHAAWILRRLERVLEY-WGGD 234
Query: 437 PSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTD 496
P++ ++AT NP H L + + ++ +DGSP + VLWNP RS S+T
Sbjct: 235 PTYALASATVGNPAAHSEALLG-APVTVVDDDGSPRGARDVVLWNPPPRERSDGMSSETA 293
Query: 497 MDDTRNAANKTSS-------------------PIS-EVSYLFAEMVQHGLRCIAFCRSRK 536
A +S P S + +F + + + FC SRK
Sbjct: 294 SPAGDGATTGEASSTGDRDVESRVDDGVADRVPASVDAPKVFGHLADD-VGTLLFCPSRK 352
Query: 537 LCELVLSYTREILEETAPHLVDS----ICVYRAGYVAEDRRRIERDFFGGKLCGVAATNA 592
L EL + ++ ++ I Y AG R E +F LCG+A T+A
Sbjct: 353 LTELSVRRANAHVQANPRTYGEAATARIAPYHAGLGKRTRHARETEFKTDALCGLATTSA 412
Query: 593 LELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEK 652
LELGID+G ++ T+ +G+PG S Q+ GR+GR SLAV VA LDQY + PE
Sbjct: 413 LELGIDIGSLEATVLMGYPGQRQSFRQRIGRAGRGTDRSLAVLVADHRTLDQYVVSNPEY 472
Query: 653 LFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGS-----GLSSGITTLKNR 707
L +S +E +D N V HL+CAA E ++L D+ FGS L +GI +
Sbjct: 473 LLESDVEDAVVDTSNDAVFASHLLCAADE--IALGTDD--FGSFADADRLRAGIEMWRRA 528
Query: 708 GYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVI----------DMQSNEVL 757
G L Y+G + P +++ + Y + + L
Sbjct: 529 GKLEG-----HREAAVHYVGPPR-PQTDVNVYGTDGTDYRLTLADGVDRDRWGLPEELDL 582
Query: 758 EEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQ--KADLKYFTKTRDYTDIHV 815
E ++ ++A +EGAV +H G + V ++ S + + D+ Y+T+TR TD++V
Sbjct: 583 EPVDRNRAARDYHEGAVRLHSGQQFEVVAVDESRPTPVIELVPVDVDYYTRTR--TDVNV 640
Query: 816 SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLP----KY 871
+ + ++ L TV + R+ G+ +TV+ +P
Sbjct: 641 VDADAEESRTVNGFDLHFGRG-----TVLVHHDAYDRVSIGNS---ETVDAGIPTGTDPI 692
Query: 872 SYESQAVWIQVPQSVKAVVEQNF-------------------SFRSGLHAASHALLHVVP 912
+ E+Q W++VP++++ + + + + +GLHAA HA + P
Sbjct: 693 AMETQLCWVEVPKTIERTLVETYRDYGVETGVDADAADPPHLGYVAGLHAAEHATIQTAP 752
Query: 913 IYVRCNFSDLA 923
+ +R + DL
Sbjct: 753 LELRVDKGDLG 763
>gi|289582631|ref|YP_003481097.1| hypothetical protein Nmag_2983 [Natrialba magadii ATCC 43099]
gi|448281940|ref|ZP_21473233.1| hypothetical protein C500_05473 [Natrialba magadii ATCC 43099]
gi|289532184|gb|ADD06535.1| Protein of unknown function DUF1998 [Natrialba magadii ATCC 43099]
gi|445577569|gb|ELY32002.1| hypothetical protein C500_05473 [Natrialba magadii ATCC 43099]
Length = 948
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 235/795 (29%), Positives = 352/795 (44%), Gaps = 120/795 (15%)
Query: 200 QLLPLEMVEHLRKGIGSQGQM----VHVEDISARKAVLVEIPDALLDNTKSALKSTGISK 255
Q +P+ E LRK G + V ++ R A V D L L
Sbjct: 25 QAIPI-TGEELRKTFPRAGARESGDISVLELPGRDAATVSNADVLRPELAEQLDH----D 79
Query: 256 LYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPV----LEALSHDLSS---------- 301
LY+HQAE++ G+NV VAT T+SGK+ Y L + L+A +
Sbjct: 80 LYAHQAEALEELECGQNVCVATSTASGKTRIYALQIARHYLDARERAAETGGKKERQNGG 139
Query: 302 -------------SALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKD-RMW 347
+A +PTKAL++DQ R L I + VYDGDT + + R
Sbjct: 140 EKAGARAASAPTPTAYICYPTKALSRDQERELNDFYDDLGLDITVRVYDGDTERGETRRQ 199
Query: 348 LRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEA 407
+R+ A ++ITN ++ + L H +++R S L VVIDE+
Sbjct: 200 IREEADVIITNFAGVN-TYLHDHDRWARFFSACDL-------------------VVIDES 239
Query: 408 HAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQN 467
H Y G G H A I+RRL R+ ++ Y +DP FV ++AT NP H L + + ++
Sbjct: 240 HTYTGVHGMHVAWIIRRLKRVLAY-YDADPQFVLTSATIGNPGAHSSTLID-DPVTVVDQ 297
Query: 468 DGSPCAQKLFVLWNPTSCLRSVLNKSQTDMD--DTRNAANKTSSPISEVSYLFAEMVQHG 525
DGSP + VLWNP S+ D D +A E L + + H
Sbjct: 298 DGSPTGPRELVLWNPPP------QSSEKDGDRAGAEDAVTDRVPATVEAPRLLSHLTYHD 351
Query: 526 LRCIAFCRSRKLCELVLSYTREILEE-----TAPHLVDSICVYRAGYVAEDRRRIERDFF 580
+ + F SRKL EL + + + T P +I Y AG+ +R E
Sbjct: 352 AQTLLFTPSRKLAELSVKRAAKHRRDRSRYYTNPDRGSAIEPYHAGHSRRNRHGTEHQLK 411
Query: 581 GGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEG 640
G L GVA+TNALELGI+VG +D T+ LG+PG S WQQ GR+GR +L+V VA
Sbjct: 412 TGVLDGVASTNALELGINVGKMDATVQLGYPGQRQSFWQQIGRAGRGANRALSVLVAGHR 471
Query: 641 PLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSG---- 696
LDQY + P+ L ++ +E +D +N V QHL+CAA L DE+ G+
Sbjct: 472 TLDQYVVSNPDYLLENDVEDAVVDTENDAVFAQHLLCAA----AELALDERDAGADGLAD 527
Query: 697 ---LSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEV----- 748
L I + G L+ L++ Y G + P +IS+ A E Y V
Sbjct: 528 RERLDRAIEMWRRAGKLTG--HLETG---VSYTGPPR-PQGSISLYATTGEEYTVELADG 581
Query: 749 IDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSS--KIALCQKADLKYFTK 806
+D + + +E + E + +EGAV +H+G Y V ++ ++ + D+ Y T+
Sbjct: 582 VDERHDPEMEPLAEERVLRDFHEGAVRLHEGQQYEVCAVDHTTPRPSVTLRPTDVAYHTR 641
Query: 807 TRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVEL 866
TR TD+ V + + +I L + L T + G +
Sbjct: 642 TR--TDVTVLDAVSEESREIGSFTLHFGRGRVLVYHDTYDEVAIH----GGKKKAQQLPT 695
Query: 867 YLPKYSYESQAVWIQVPQSVK-AVVE--QNFS---------------FRSGLHAASHALL 908
P S E+Q W++VP+ V+ A+VE ++FS + GLHAA HA +
Sbjct: 696 GNPPLSMETQLCWLEVPEHVESALVERYRDFSVPGLDSDLADTAHLGYAGGLHAAEHATI 755
Query: 909 HVVPIYVRCNFSDLA 923
V P+ + + DL
Sbjct: 756 GVAPLELMVDKRDLG 770
>gi|448404223|ref|ZP_21572470.1| helicase [Haloterrigena limicola JCM 13563]
gi|445663843|gb|ELZ16584.1| helicase [Haloterrigena limicola JCM 13563]
Length = 817
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 215/778 (27%), Positives = 338/778 (43%), Gaps = 84/778 (10%)
Query: 218 GQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVAT 277
GQ+ E + AR A V + + D + L + LY HQA+ + A +N+VV T
Sbjct: 26 GQVTASEHVPARDADTVPAEEIIRDELANQLDN----DLYRHQAKGLKALADDENIVVTT 81
Query: 278 MTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYD 337
TSSGK+ Y L + + ++AL ++P KAL +DQ R L +D VYD
Sbjct: 82 STSSGKTRIYALQIARNQLDNPDATALCIYPMKALTRDQERTLNDRLAEWDVDTRTEVYD 141
Query: 338 GDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQ---FSRILSNLRLIAFSLVTTEVYL 394
GDT + + +R NA ++TNP L++ LP H +SR +NL LI
Sbjct: 142 GDTKRDRKRDIRSNADTILTNPAGLNV-YLPRHNTDSGWSRFYNNLELI----------- 189
Query: 395 IFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCM 454
V+DEAH Y G G H A ILRRL RL + Y +DP FV +TAT NP EH
Sbjct: 190 --------VVDEAHQYSGVMGTHVAWILRRLRRLLKY-YNADPQFVLTTATIGNPAEHAT 240
Query: 455 ELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTS-SPISE 513
L + +I DGSP ++ VLW P + + +MD + + S E
Sbjct: 241 RLTS-EEFTVIDEDGSPHGERDIVLWKPPIDEEAFREAEEYNMDPSEGGLEEFRISTGEE 299
Query: 514 VSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRR 573
+ + A + + + + FC +R+ E+ + Y G RR
Sbjct: 300 AAKVTAHLAINKRQTLQFCSARQGTEIAAQKIGGAARDHPRGYYVDTKAYHGGLGKRTRR 359
Query: 574 RIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLA 633
IE G + VA+TNALELGID+G ID T+ G+PG+ S WQQ GR+GR + +L+
Sbjct: 360 GIEAQLQDGVVDAVASTNALELGIDIGGIDATVTSGYPGTRQSFWQQIGRAGRGQTDALS 419
Query: 634 VYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYF 693
V V +D Y + P LF+ +E + +N +V HL AA E L+ D
Sbjct: 420 VLVGGADAMDSYILDNPSYLFEDDVEDAVVSIENEQVYADHLCVAAKERRLT-DEDAGIL 478
Query: 694 GSG--LSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDM 751
G LS ++ + G L L++ Y G + P ISI +Y V +
Sbjct: 479 GEEDRLSEMVSMWQEAGVLERGVDLENG---VHYTG-DTRPESRISIYDTSGRQYIVNCI 534
Query: 752 QSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIA--LCQKADLKYFTKTRD 809
+ + + +A+ ++GA+++H G Y V E+ ++ L ++ +T+T
Sbjct: 535 DGEIDHDPVAKERAYRDYHKGALFLHDGEQYEVVEVEHDARTPRILVEERTTGRYTQT-- 592
Query: 810 YTDIHVSG--------GNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIF 861
+D +S N Y + + AQ L ++T GS
Sbjct: 593 LSDKRISNLRPEMSQDLGNGYKLWFGRANVDIDYAQYLVHNISTGEVESGPHPTGS---- 648
Query: 862 DTVELYLPKYSYESQAVWIQVP----------------QSVKAVVE-------QNFSFRS 898
P S +++ +W+ +P Q K E + +++
Sbjct: 649 -------PPLSLDTELMWVSLPSDHLSTTISRLDEPLLQPTKHAEEDTGLTEPEQYTYAG 701
Query: 899 GLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERI-LLYDRHPGGTGVSKQV 955
G+HAA H ++ + P+ + + SD+ H P + ++D GG G S+ +
Sbjct: 702 GIHAAEHGIIQLAPLELMIDNSDIGGLSTPRHPDERIPGPVWFVHDGIDGGIGFSRAI 759
>gi|167536662|ref|XP_001750002.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771512|gb|EDQ85177.1| predicted protein [Monosiga brevicollis MX1]
Length = 1009
Score = 253 bits (645), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 148/424 (34%), Positives = 218/424 (51%), Gaps = 48/424 (11%)
Query: 505 NKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYR 564
+K +SPI E + L + + + G+R + F R RK+ EL+L YTR L TAPHL + YR
Sbjct: 575 SKITSPILETALLLSALTKMGVRTLTFSRVRKVSELILKYTRRDLRLTAPHLQGKVQAYR 634
Query: 565 AGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
AGY E RR+IER F G+L G ATNALELG+D+G +DVTL LGFP S+AS+WQQAGR+
Sbjct: 635 AGYTKETRRQIERQLFNGELLGTTATNALELGVDIGSLDVTLLLGFPSSVASMWQQAGRA 694
Query: 625 GRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
GR +L + V F LDQY+ ++ +LF+ P E D N VL +HL+CAA E PL
Sbjct: 695 GRGTNKALTIIVLFNSALDQYYARHGPELFQRPTEAAISDPDNPYVLREHLLCAAAELPL 754
Query: 685 SLIYDE---------KYFGSG-------------------------------LSSGITTL 704
L ++ G G L G T
Sbjct: 755 RLSREDVQRLRAAVSAVLGPGVQLASEAAVVEAARQHIGLLPTAVVAECQDLLLFGETAG 814
Query: 705 KNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESK 764
L+SD L + + + P+ IS+R IE + Y+V+ ++E++
Sbjct: 815 DLAHALTSDGLLQLQSPGYVLPQRDIHPAANISLRTIEEDGYDVVVTPDMRKIDEVDARH 874
Query: 765 AFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYAT 824
A F+ Y+GA+++H+G TYLV L+ ++ A Q + YFTK D +D+ V +A+
Sbjct: 875 ALFETYQGAIFLHRGQTYLVTFLDHDNRQAHVQPVTVDYFTKPSDRSDVDVI---SAFRK 931
Query: 825 KISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQ 884
+ Q T Q V +G+ ++ + +FDTVEL Y+++ VW+ +
Sbjct: 932 RQPPLQAAWGTVQ-----VKIEIYGYQKIRERTLELFDTVELEAEPVEYKTRGVWLDINP 986
Query: 885 SVKA 888
+ KA
Sbjct: 987 ATKA 990
Score = 162 bits (411), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 96/275 (34%), Positives = 138/275 (50%), Gaps = 55/275 (20%)
Query: 217 QGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVA 276
QGQ+VH+E I R + L + + L++ G +L++HQ
Sbjct: 178 QGQVVHIERIPPRHPTYAPLDTPLPADLAATLRALGTHQLFAHQ---------------- 221
Query: 277 TMTSSGKSLCYNLPVLEAL-SHDLSSSALYMFPTKALAQDQLRALLAMTKA--FDASIDI 333
+PVLE L +D + ALYMFPTKALAQDQLR+L T A +
Sbjct: 222 ------------VPVLEQLLENDTDNVALYMFPTKALAQDQLRSLSNYTGAGWLGDVVRA 269
Query: 334 GVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVY 393
D DT+Q R +R +++TNPDMLH+++L H ++ R+
Sbjct: 270 ATLDADTSQSQREDIRQTGNIILTNPDMLHVTLLARHERWCRL----------------- 312
Query: 394 LIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHC 453
F +R+VV+DEAH Y+G FG H A ++RRL R+CS F+ +AT ANP H
Sbjct: 313 --FRTLRYVVLDEAHTYRGVFGSHVACVMRRLLRICSLYRNDRVQFICCSATLANPGFHF 370
Query: 454 MELANLSTLE-----LIQNDGSPCAQKLFVLWNPT 483
+L L ++ ++Q DGSP ++LF LWNPT
Sbjct: 371 RQLVPLYGMQSRELCVVQKDGSPSGERLFALWNPT 405
>gi|110667806|ref|YP_657617.1| helicase [Haloquadratum walsbyi DSM 16790]
gi|109625553|emb|CAJ51979.1| probable DEAD/DEAH box helicase [Haloquadratum walsbyi DSM 16790]
Length = 847
Score = 252 bits (644), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 217/777 (27%), Positives = 345/777 (44%), Gaps = 129/777 (16%)
Query: 254 SKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALA 313
++L+ HQA ++ A +NVVV T TSSGK+ Y L + ++ ++AL ++P KAL
Sbjct: 71 NELFEHQATALAALADDENVVVTTSTSSGKTWVYALQIARMHLYNPETTALCLYPMKALT 130
Query: 314 QDQLRALL-AMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQ 372
+DQ R L + + + IGVYDGDT + +R++A +++TNP L++ LP H +
Sbjct: 131 RDQERELNNKLRDDWGLDVKIGVYDGDTPTDRKREIRESADVILTNPAGLNV-YLPRHNR 189
Query: 373 FS---RILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLC 429
S R +NL LI V+DEAH Y G G H A ILRRL R+
Sbjct: 190 DSGWRRFYANLDLI-------------------VVDEAHEYAGVTGTHVAWILRRLRRIV 230
Query: 430 SHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSV 489
Y ++P FV +TAT NP +H L +I DGSP + VLW P +
Sbjct: 231 R-AYDANPQFVLTTATIGNPADHARRLTG-ELFTVIDEDGSPRGSRDIVLWEPPVDWDQI 288
Query: 490 LNKSQ-----TDMDDTRNAANKTSSPI-----------SEVSYLFAEMVQHGLRCIAFCR 533
+ + TD + + S P SE + + A + H + + FC
Sbjct: 289 TDDDEKHTAATDQAGSTKSGASESDPAAEFERARQSTGSEAAQVTAHLASHNTQTLQFCS 348
Query: 534 SRKLCELVLSYTREILEETAPHLVDSICV--YRAGYVAEDRRRIERDFFGGKLCGVAATN 591
+R+ E+ T + + D++ V Y AG RRR+E G+L VA TN
Sbjct: 349 ARQGTEIAAKQTLDTARSS-----DNLAVEPYHAGLGKRLRRRVENGLKDGRLDAVATTN 403
Query: 592 ALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPE 651
ALELGID+G +D T+ G+PG+ S WQQ GR+GR +L+V V + +D Y +P
Sbjct: 404 ALELGIDIGSVDATVTAGYPGTKQSFWQQIGRAGRGTTDALSVLVGGDDAIDAYIFDHPS 463
Query: 652 KLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSG--LSSGITTLKNRGY 709
LF +E + N V HL+ AA E PLS D GS L + ++ G
Sbjct: 464 YLFNETVEDAVVSVDNEPVYADHLLAAADERPLSDA-DAGLLGSETRLRETVQMWQDAGV 522
Query: 710 LSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEE--IEESKAFF 767
L LD + Y G + P +S+ + VI + ++ ++ + +A+
Sbjct: 523 LEQTGRLDGTG--VGYAG-DPRPQGRLSLYNTSGREFAVICIDTDAQIDHDPVAAERAYR 579
Query: 768 QVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKIS 827
+EGA+++H G Y V ++ S Q L T T YT +S
Sbjct: 580 DYHEGALFLHAGQQYEVVNVDDES----SQPRILVKQTNTGKYTQT------------LS 623
Query: 828 KDQLTKTTAQ---ALACTVTTTWFGFYRLWRGSGIIFDTVELYL---------------- 868
Q+T+ AQ +LA G Y + G G + T + YL
Sbjct: 624 TKQITELHAQEHHSLA--------GAYDRYFGRGTVKITYDQYLVRQISTGEVVRGPLPT 675
Query: 869 --PKYSYESQAVWIQVPQS-VKAVVEQ-----------------------NFSFRSGLHA 902
P ++ +W+ +P + V + +++ +++ G+HA
Sbjct: 676 QSPPMELNTELMWVSLPPNHVASTIDRLDVPLLSPTARSSGDTRVPDEAAQYTYGGGIHA 735
Query: 903 ASHALLHVVPIYVRCNFSDLA--PECPNPHDSRYFPERILLYDRHPGGTGVSKQVTD 957
A H L+ + P+ + + +D+ +PH++ P ++D GG G ++ + D
Sbjct: 736 AEHGLIQLAPLELLVDNNDIGGLSTLNHPHETVSGP-VWFIHDGIDGGIGFTRAIYD 791
>gi|296132585|ref|YP_003639832.1| DEAD/DEAH box helicase [Thermincola potens JR]
gi|296031163|gb|ADG81931.1| DEAD/DEAH box helicase domain protein [Thermincola potens JR]
Length = 880
Score = 252 bits (643), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 191/715 (26%), Positives = 325/715 (45%), Gaps = 91/715 (12%)
Query: 256 LYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQD 315
LY+HQA++I ++ G+NVV+ T T+SGK++ + LPVL +L D + AL+ +PTKAL+ D
Sbjct: 54 LYTHQAKAIDYAVKGENVVICTGTASGKTIAFALPVLHSLLADDKARALFFYPTKALSGD 113
Query: 316 QLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSIL--PYHGQF 373
Q L + ++F + + +DGDT +K R N R+L+ PD+LH ++L G +
Sbjct: 114 QWEKLQDLAESFGLAGKVYKFDGDTPEKIRQEALKNGRILLCTPDVLHQTMLRRSLEGNY 173
Query: 374 SRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVY 433
+ + SNL ++V++DE H Y GAFG + A +LRRL ++C +
Sbjct: 174 AELFSNL-------------------KYVILDECHIYSGAFGSNMAYLLRRLRQVCRRLG 214
Query: 434 GSDPSFVFSTATSANPREHCMELANLSTLELIQND-GSPCAQKLFVLWNPTSCLRSVLNK 492
G+ P F+ ++ATS +P H +L + + + D GSP + F +
Sbjct: 215 GA-PQFMAASATSKDPGGHLEKLTGVKFAVIGEEDNGSPSGGRDFYV------------A 261
Query: 493 SQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEET 552
++D++D ++ + + AE+V+ R I FC SR++ E + L E
Sbjct: 262 VKSDLEDDKSVID-----------IVAELVRQDKRFIVFCHSRRITEQLFV----DLVEN 306
Query: 553 APHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPG 612
P + + YR+GY AEDR++IE G L GV +T+ALELG+D+ ++ + +G P
Sbjct: 307 YPQVEGLVMPYRSGYEAEDRQKIEEAMRNGSLKGVISTSALELGVDLPELEFCVLMGIPS 366
Query: 613 SIASLWQQAGRSGRRERP-SLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVL 671
+ S WQ+ GR GR + + +D+Y+ +PE LF +E I N +++
Sbjct: 367 TAMSFWQRVGRVGRSPGSRGKVIIIPSANSIDEYYRLHPENLFSRELEDLVIHLDNRQLI 426
Query: 672 EQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKM 731
H CA E S +D R L +D AK+ E I +
Sbjct: 427 LAHFACARTE---SGNFD-----------------RPDLDADIFGRDFAKLAENINEMDI 466
Query: 732 ---------PSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTY 782
P + IR I+ E +E+ + L I S+ + Y AVY H G Y
Sbjct: 467 SDDVLIRPEPHQIVGIRGIDDETFEIYTGGGEQRLGTISYSQILREAYPKAVYRHMGEAY 526
Query: 783 LVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACT 842
V+ + + ++ T + + N K + L + +A T
Sbjct: 527 RVERVRYKDRTIRVRREKRTISTSPIGFVIVKERVNNGVVYRKATWGNLLEMWHTTVAVT 586
Query: 843 VTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHA 902
T+ G+ + + L + S+ VW + + + L+A
Sbjct: 587 TNTS--GYRERVNNQWVHQEKYPTPLQRRVV-SEGVWFKFSPDFGKIS------KDALNA 637
Query: 903 ASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTD 957
+HAL ++ I C+ +++A + ++R R ++D GG G++ V D
Sbjct: 638 FAHALSNIFSILHPCDPAEIATH--SVVNARDGSARCYIFDTTSGGLGITAAVFD 690
>gi|448355565|ref|ZP_21544316.1| hypothetical protein C483_16171 [Natrialba hulunbeirensis JCM
10989]
gi|445635093|gb|ELY88265.1| hypothetical protein C483_16171 [Natrialba hulunbeirensis JCM
10989]
Length = 946
Score = 251 bits (642), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 231/802 (28%), Positives = 354/802 (44%), Gaps = 145/802 (18%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E+ E + + + V ++ R A V D L L+ LY+HQAE++
Sbjct: 33 ELRETFPRAGARESGDISVLELPGRDAATVPNSDVLRPELAEQLEH----DLYTHQAEAL 88
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPV----LEALSHDLSSSALYM-------------- 306
A G+NV VAT T+SGK+ Y L + L+A +
Sbjct: 89 EALECGENVCVATSTASGKTRIYALQIARHYLDARGRAAETGGKKGKPNGGEKTGAGAGA 148
Query: 307 -----------FPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKD-RMWLRDNARL 354
+PTKAL++DQ R L I + VYDGDT + + R +R+ A +
Sbjct: 149 AAAPTPTAYVCYPTKALSRDQERELNDFYDDLGLDITVRVYDGDTERGETRRQIREEADV 208
Query: 355 LITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAF 414
+ITN ++ + L H +++R S L VVIDE+H Y G
Sbjct: 209 IITNFAGVN-TYLHDHDRWARFFSACDL-------------------VVIDESHTYTGVH 248
Query: 415 GCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQ 474
G H A I+RRL R+ ++ Y +DP FV ++AT NP H L + + +I DGSP
Sbjct: 249 GMHVAWIIRRLKRVLAY-YDADPQFVLTSATIGNPGAHSSTLID-DQVTVIDEDGSPTGP 306
Query: 475 KLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRS 534
+ VLWNP + ++ + ++A E L + + H + + F S
Sbjct: 307 RELVLWNPPP----LPSEEDGNGAGGKDAVTDRVPATVEAPRLLSHLTYHDAQTLLFTPS 362
Query: 535 RKLCELVLSYTREILEE-----TAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAA 589
RKL EL + + + T P +I Y AG+ +R E G L GVA+
Sbjct: 363 RKLAELSVKRAAKHRRDRSQYYTNPDRGSAIEPYHAGHSRRNRHGTEHQLKTGVLDGVAS 422
Query: 590 TNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKY 649
TNALELGI+VG +D T+ LG+PG S WQQ GR+GR + +L+V VA LDQY +
Sbjct: 423 TNALELGINVGEMDATVQLGYPGQRQSFWQQIGRAGRGAKRALSVLVAGHRTLDQYVVNN 482
Query: 650 PEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSG-------LSSGIT 702
E L ++ +E +D +N V QHL+CAA L DE G+ L I
Sbjct: 483 SEYLLENDVEDAVVDTENDAVFAQHLLCAA----AELALDESDAGADGLADRERLERAIE 538
Query: 703 TLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEV-----IDMQSNEVL 757
+ G L+ L++ Y G + P +IS+ A E Y V +D + + +
Sbjct: 539 MWRRAGKLTG--HLETGVS---YTGPPR-PQRSISLYATTGEEYTVELADGVDERHDPEM 592
Query: 758 EEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSS--KIALCQKADLKYFTKTRDYTDIHV 815
E + E + +EGAV +H+G Y V ++ ++ + D+ Y+T+TR TD+ V
Sbjct: 593 EPLAEERVLRDFHEGAVRLHEGQQYEVCAVDHTTPRPSVTLRPTDVAYYTRTR--TDVTV 650
Query: 816 SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGII----FDTVELYL--- 868
L + ++ T FG RG ++ +D V ++
Sbjct: 651 ---------------LDAVSEESREIGSFTLHFG-----RGRVLVYHDAYDEVAIHGGKK 690
Query: 869 ---------PKYSYESQAVWIQVPQSVK-AVVE--QNFS---------------FRSGLH 901
P S E+Q W++VP+ V+ A+VE ++FS + GLH
Sbjct: 691 QAQQLPTGNPPLSMETQLCWLEVPERVESALVERYRDFSVPELDSDLADTAHLGYAGGLH 750
Query: 902 AASHALLHVVPIYVRCNFSDLA 923
AA HA + V P+ + + DL
Sbjct: 751 AAEHATIGVAPLELMVDKRDLG 772
>gi|385803251|ref|YP_005839651.1| DEAD/DEAH box helicase [Haloquadratum walsbyi C23]
gi|339728743|emb|CCC39904.1| probable DEAD/DEAH box helicase [Haloquadratum walsbyi C23]
Length = 848
Score = 248 bits (633), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 216/776 (27%), Positives = 343/776 (44%), Gaps = 130/776 (16%)
Query: 254 SKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALA 313
++L+ HQA ++ A +NVVV T TSSGK+ Y L + ++ ++AL ++P KAL
Sbjct: 71 NELFEHQATALAALADDENVVVTTSTSSGKTWVYALQIARMHLYNPETTALCLYPMKALT 130
Query: 314 QDQLRALL-AMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQ 372
+DQ R L + + + IGVYDGDT + +R++A +++TNP L++ LP H +
Sbjct: 131 RDQERELNNKLRDDWGLDVKIGVYDGDTPTDRKREIRESADVILTNPAGLNV-YLPRHNR 189
Query: 373 FS---RILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLC 429
S R +NL LI V+DEAH Y G G H A ILRRL R+
Sbjct: 190 DSGWRRFYANLDLI-------------------VVDEAHEYAGVTGTHVAWILRRLRRIV 230
Query: 430 SHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSV 489
Y ++P FV +TAT NP +H L +I DGSP + VLW P +
Sbjct: 231 R-AYDANPQFVLTTATIGNPADHARRLTG-ELFTVIDEDGSPRGSRDIVLWEPPVDWDQI 288
Query: 490 L------NKSQTDMDDTRNAANKTSSPI-----------SEVSYLFAEMVQHGLRCIAFC 532
+ TD + + S P SE + + A + H + + FC
Sbjct: 289 TDDDDEKHTGATDQAGSTKSGASESDPAAEFERARQSTGSEAAQVTAHLASHNTQTLQFC 348
Query: 533 RSRKLCELVLSYTREILEETAPHLVDSICV--YRAGYVAEDRRRIERDFFGGKLCGVAAT 590
+R+ E+ T + + D++ V Y AG RRR+E G+L VA T
Sbjct: 349 SARQGTEIAAKQTLDTARSS-----DNLAVEPYHAGLGKRLRRRVENGLKDGRLDAVATT 403
Query: 591 NALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYP 650
NALELGID+G +D T+ G+PG+ S WQQ GR+GR +L+V V + +D Y +P
Sbjct: 404 NALELGIDIGSVDATVTAGYPGTKQSFWQQIGRAGRGTTDALSVLVGGDDAIDAYIFDHP 463
Query: 651 EKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSG--LSSGITTLKNRG 708
LF +E + N V HL+ AA E PLS D GS L + ++ G
Sbjct: 464 SYLFNETVEDAVVSVDNEPVYADHLLAAADERPLSDA-DAGLLGSETRLRETVQMWQDAG 522
Query: 709 YLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEE--IEESKAF 766
L LD + Y G + P +S+ + VI + ++ ++ + +A+
Sbjct: 523 VLEQTGRLDGTG--VGYAG-DPRPQGRLSLYNTSGREFAVICIDTDAQIDHDPVAAERAY 579
Query: 767 FQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKI 826
+EGA+++H G Y V ++ S Q L T T YT +
Sbjct: 580 RDYHEGALFLHAGQQYEVVNVDDES----SQPRILVKQTNTGKYTQT------------L 623
Query: 827 SKDQLTKTTAQ---ALACTVTTTWFGFYRLWRGSGIIFDTVELYL--------------- 868
S Q+T+ AQ +LA G Y + G G + T + YL
Sbjct: 624 STKQITELHAQEHHSLA--------GAYDRYFGRGTVKITYDQYLVRQISTGEVVRGPLP 675
Query: 869 ---PKYSYESQAVWIQVPQS-VKAVVEQ-----------------------NFSFRSGLH 901
P ++ +W+ +P + V + +++ +++ G+H
Sbjct: 676 TQSPPMELNTELMWVSLPPNHVASTIDRLDVPLLSPTARSSGDTRVPDEAAQYTYGGGIH 735
Query: 902 AASHALLHVVPIYVRCNFSDLA--PECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
AA H L+ + P+ + + +D+ +PH++ P ++D GG G ++ +
Sbjct: 736 AAEHGLIQLAPLELLVDNNDIGGLSTLNHPHETVSGP-VWFIHDGIDGGIGFTRAI 790
>gi|336180102|ref|YP_004585477.1| helicase/secretion DEAH-box helicase [Frankia symbiont of Datisca
glomerata]
gi|334861082|gb|AEH11556.1| helicase/secretion neighborhood putative DEAH-box helicase [Frankia
symbiont of Datisca glomerata]
Length = 750
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 154/448 (34%), Positives = 236/448 (52%), Gaps = 21/448 (4%)
Query: 509 SPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYV 568
S +E + L A++V G+R + F RSR+ E++ R L E + LV+ + YRAGY+
Sbjct: 262 SATAEAADLLADLVADGVRTLVFVRSRRGAEVIAQSARRALSEVSADLVERVAAYRAGYL 321
Query: 569 AEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRE 628
E+RR +E D G+L GVAATNALELG+D+ +DVT+ G+PG++ASLWQQAGR+GR
Sbjct: 322 PEERRALEADLRSGRLLGVAATNALELGVDITGLDVTVITGYPGTLASLWQQAGRAGRDG 381
Query: 629 RPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIY 688
+LAV VA PLD Y + +PE +F P+E +D N VL HL CAA E PL+
Sbjct: 382 AGALAVLVARVDPLDTYLVHHPEAVFGRPVEATVLDPDNPYVLGPHLECAAAELPLTE-D 440
Query: 689 DEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEV 748
D FG + L RG L P+ Y H P + IR + +
Sbjct: 441 DLDLFGPLARPTVDDLVRRGRLRRRPA-------GWYWTHRHRPE--VDIRGVGGPPVRI 491
Query: 749 IDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTR 808
++ + +L ++ + + V+ GAVY+HQG +YLV E +L + +AL + A + T R
Sbjct: 492 VEASTGRLLGTVDAATSHSTVHRGAVYLHQGGSYLVIEFDLDAAVALVEAATPDWTTVAR 551
Query: 809 DYTDIHVSGGNNAYATKISKD-QLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELY 867
+ TDI V + ++I+ D +L T + V++ + R GSG + L
Sbjct: 552 EDTDIRVV---ESIRSRIAGDVELHLGTVE-----VSSQVVSYQRRQTGSGRVIGDEPLD 603
Query: 868 LPKYSYESQAVWIQVPQSVKAVVEQNFSFRSG-LHAASHALLHVVPIYVRCNFSDLAPEC 926
LP ++AVW V + + A E + G +HAA HA + ++P++ C+ D+
Sbjct: 604 LPARHLRTRAVWYTVSEGLLAEAEIDEDAVPGAVHAAEHAAIGILPLFATCDRWDIGGVS 663
Query: 927 PNPHDSRYFPERILLYDRHPGGTGVSKQ 954
H + +YD +PGG G +++
Sbjct: 664 TALHPDTSL-TTVFVYDGYPGGAGFAER 690
Score = 110 bits (274), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 78/147 (53%), Gaps = 21/147 (14%)
Query: 336 YDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLI 395
YDGDT +R W+R +A ++TNPDMLH ILP H ++S L L
Sbjct: 6 YDGDTPAYERDWVRAHATFVLTNPDMLHRGILPSHRRWSTFLRGL--------------- 50
Query: 396 FLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCME 455
R+VV+DE H Y+G FG H A +LRRL R+C+ YGS P F+ ++AT + P
Sbjct: 51 ----RYVVVDECHGYRGVFGSHVAHVLRRLRRVCAR-YGSAPVFILASATVSEPANAAGR 105
Query: 456 LANLSTLELIQNDGSPCAQKLFVLWNP 482
L L + ++ D SP F L+ P
Sbjct: 106 LTGLD-VRAVEEDASPRGAMSFALYEP 131
>gi|168698306|ref|ZP_02730583.1| hypothetical protein GobsU_02226 [Gemmata obscuriglobus UQM 2246]
Length = 1028
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 219/778 (28%), Positives = 339/778 (43%), Gaps = 114/778 (14%)
Query: 204 LEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAES 263
L E LR G S +SA V +P L + L L+ HQ +
Sbjct: 242 LAAAEGLRVGYDSS--------VSATDGVFEPVPADLRPELAAYLARQYPHGLFRHQRRA 293
Query: 264 IMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL--- 320
+ L G + VVAT TSSGKSL Y++PVL L D S++AL++FP KALA DQL+ L
Sbjct: 294 VQGLLKGAHTVVATRTSSGKSLIYSVPVLNRLLTDPSATALFLFPQKALANDQLQRLIEA 353
Query: 321 ------LAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQ-F 373
LA +A + I YDG T D+ +R+ A++L+TNPDMLH +L +H + +
Sbjct: 354 ADSVPTLARMRAAKPWL-ISRYDGATPDDDKPAIRNEAQVLLTNPDMLHYGLLAWHERHW 412
Query: 374 SRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVY 433
R +NL R+VV DE H Y+G FG + + + RRL LC+ Y
Sbjct: 413 QRFFTNL-------------------RYVVADECHEYRGIFGTNVSYLFRRLRALCAR-Y 452
Query: 434 GSDPSFVFSTATSANPREHCMELANLSTLELI--QNDGSPCAQKLFVLWNPTSCLRSVLN 491
GS P+F+ ++AT +P EH L L + + DGS ++ F + +RS
Sbjct: 453 GSSPTFIATSATVQSPSEHMERLTGLP-FDCVGPSEDGSQQGERKFWM------VRS--- 502
Query: 492 KSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEE 551
P L + + GL + FC SR E +++ + + ++
Sbjct: 503 ---------------EEHPYDAGRKLTLALAESGLTVLTFCMSRTAAERMMARSGKDNKD 547
Query: 552 TAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFP 611
P V VYRAG +R IE+ + V +T+ALELGID+G IDV + +G P
Sbjct: 548 PEPPFVR---VYRAGLTRSEREEIEQGLKNRTVRAVFSTSALELGIDIGAIDVVVCVGLP 604
Query: 612 GSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVL 671
++ SLWQ+AGR+GR + V + + P+D Y+ +PE LF E ++ N V
Sbjct: 605 NTMMSLWQRAGRAGRAGKQGAVVLIPGQTPIDTYYADHPEDLFARDHEPLVLNLANRSVT 664
Query: 672 EQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKM 731
H CA E D G +++ + ++ G L D IF Y+
Sbjct: 665 HMHYACAMKEAGDESRLDTATLGPEIAA-VKKQRDAGDLQED--------IF-YVSD--- 711
Query: 732 PSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSS 791
P + +R E Y + M E + EI+ + +Y H G Y V+++
Sbjct: 712 PHQRVRVRGAGDEAYRL--MLDKEEIGEIDPFHLLHEAPRNGIYYHGGRRYRVQDVQQKE 769
Query: 792 KIALCQKADLKYFTKTRDYTDIHVSGGNN---------AYATKISKDQLTKTTAQALACT 842
+I + + T + T I V + A A D L T + L T
Sbjct: 770 RIVRLKPEFSPHVTTSNIGTRIRVRRASAVRKHGQVIVARAVLDVNDYLRNVTEKHLNGT 829
Query: 843 VTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVP--QSVKAVVEQNFSFRSGL 900
R + G+G+ + +LP E + ++ P V A + + + ++ L
Sbjct: 830 KV-------REYPGAGMPNN----WLPT---EGTMLRLERPFWDEVTARL-GDGAAKAAL 874
Query: 901 HAASHALLHVVP-IYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQVTD 957
+ + P + C+ SD + P D+ P + LYD P G G++ + D
Sbjct: 875 DTTARLFGSLFPTVTGPCDASDYSATADCPKDA---PPAVYLYDMVPYGVGLAVEACD 929
>gi|89893419|ref|YP_516906.1| hypothetical protein DSY0673 [Desulfitobacterium hafniense Y51]
gi|89332867|dbj|BAE82462.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 855
Score = 246 bits (627), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 201/749 (26%), Positives = 338/749 (45%), Gaps = 105/749 (14%)
Query: 227 SARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLC 286
S+R ++ P+ L + K LYSHQ I++ L G + + T T+SGKSL
Sbjct: 21 SSRSGKYMKTPEILDTRLRLYTKFKYPQGLYSHQVMCIISLLNGHHTALCTSTASGKSLG 80
Query: 287 YNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDI-GVYDGDTTQKDR 345
+ P ++ + ++ ++ AL+++P KALA DQ+ L ++ DI +DGD DR
Sbjct: 81 FCYPAMQEILNNSNARALFVYPIKALANDQIAKLKSLATDLALKPDIVRKFDGDVKATDR 140
Query: 346 MWLRDNARLLITNPDMLHMSILPYHGQ--FSRILSNLRLIAFSLVTTEVYLIFLFIRFVV 403
+ + +R+L+ PD+LH ++L + + +SR NL L V+
Sbjct: 141 VEALEKSRILVVTPDVLHTTLLRLNDEPLYSRFFENLSL-------------------VI 181
Query: 404 IDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLE 463
+DE H Y G FG + A +L RL ++C GS+P F+ S+AT NP+EH +L + +
Sbjct: 182 LDECHTYSGVFGSNMAYVLSRLRQVCQK-KGSNPRFMMSSATVGNPQEHLRQLTGIEDIT 240
Query: 464 LIQN--DGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEM 521
+I +GSP ++ F + PT L +D L E+
Sbjct: 241 IIDERFNGSPQFEREFFMVQPTRYLEGY------TLD------------------LMGEL 276
Query: 522 VQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFG 581
+Q R + F +SR+ E ++ E P + YRAG+ +R++IE F
Sbjct: 277 IQQNTRFLVFGQSRQQIERLV----ESFRLKYPKYRSKVEPYRAGFTPTERQQIENSFRK 332
Query: 582 GKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGP 641
G+L G+ AT+ALELG+D+ ++ V + LG P + +S WQQ+GR GR + + + +
Sbjct: 333 GELVGLVATSALELGVDLPNLSVCIILGLPSTKSSFWQQSGRIGRSNE-GVVIVLRTDSA 391
Query: 642 LDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAA-----LEHPLSLIYDEKYFGSG 696
D YF PEKL+ P E I+ N ++ H CA E+P D + FGS
Sbjct: 392 FDNYFFNNPEKLYNKPFEPLVINQNNEPLMIGHYACARAESGDFENPF---LDHRIFGSK 448
Query: 697 LSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVI---DMQS 753
SG++ N D + +I + K P I+IR++ Y+++ D Q
Sbjct: 449 F-SGLSQRIN--------EFDYTDEIL----YTKDPHFEINIRSLNDPTYQIVIGRDSQ- 494
Query: 754 NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDI 813
+ + I S+ + Y A+++ +G Y V +++ ++K A ++ TR ++
Sbjct: 495 DPPIGTITYSQLMREAYPQAIFLQRGKRYRVTKISFTNKKVYVD-ARCPMYSSTRPKGEV 553
Query: 814 HVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIF----DTVELYLP 869
+ + + L K + T+ T G G II + VE P
Sbjct: 554 RIK-------ERFNGRILQKHWGSGV--TIRNTTLGILEKVSGYQIITGKEKEDVEYAQP 604
Query: 870 KYSY-ESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPN 928
Y +Q V I +K + + S GL A H ++ P++ C D+A
Sbjct: 605 LMRYFVTQGVIIH----LKDISSLSHSAVVGLTTALH---NIYPVFYPCAKEDIASYAW- 656
Query: 929 PHDSRYFPERILLYDRHPGGTGVSKQVTD 957
++ + LYD + GG G++ D
Sbjct: 657 ---AKAGEAGVFLYDNNAGGLGLTAAAFD 682
>gi|171688476|ref|XP_001909178.1| hypothetical protein [Podospora anserina S mat+]
gi|170944200|emb|CAP70310.1| unnamed protein product [Podospora anserina S mat+]
Length = 512
Score = 243 bits (620), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 143/407 (35%), Positives = 217/407 (53%), Gaps = 31/407 (7%)
Query: 563 YRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAG 622
YR GY A+DRR+IE + F GKL G+ AT ALELG+D+G +D + GFP +I++L QQ+G
Sbjct: 3 YRGGYTAQDRRKIESEMFEGKLLGIVATTALELGVDIGTLDCVITWGFPYTISNLRQQSG 62
Query: 623 RSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEH 682
R+GRR + SL++ V DQ++M P++LF P +D N V E H+ CAA E
Sbjct: 63 RAGRRNKDSLSILVGDSFATDQHYMNNPDELFTKPNAALQVDLDNMLVKEGHIQCAAYEL 122
Query: 683 PLSLIYDEKYFGSGLSSGITTLKNRGYLSSDP--SLDSSAKIFEYIGHEKMPSHTISIRA 740
P+ D YFG L+ +T L DP + +A F PS +SIR
Sbjct: 123 PIRPDVDSVYFGPDLAEICST-----RLLHDPLTNFYHTADRF-----RPQPSKFVSIRD 172
Query: 741 IESERYEVIDMQSNE--VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQK 798
E + + ++D N VLEE+E S+A F +Y+GA+++HQG TYLV++ N S+KIA ++
Sbjct: 173 TEEDHFAIVDTTHNRNIVLEELEASRATFTLYDGAIFLHQGLTYLVRDFNPSTKIARVER 232
Query: 799 ADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSG 858
+ + TK RDYTDI + T+ K A + +T T FGF+++ +
Sbjct: 233 VKVSWTTKQRDYTDI------DPIETEALKPLSPAAQAFYGSIRITQTVFGFFKVDSKTN 286
Query: 859 IIFDTVELYLPKYSYESQAVWIQVPQ-SVKAVVEQNFSFRSGLHAASHALLHVVPIYVRC 917
I D V + P ++ +WI +P ++ + + +HAA HAL+ ++P +V
Sbjct: 287 KILDAVAVDNPPVVRFTKGMWIDIPPLALSILTSRQLHVAGAIHAAQHALMSLIPNFVVS 346
Query: 918 NFSDLAPECPNP--------HDSRYFPERILLYDRH--PGGTGVSKQ 954
D+ EC NP R P R+ YD GG+G++ +
Sbjct: 347 LPGDVRTECKNPLKELVSKRETKRKRPARLTFYDAKGGEGGSGINTK 393
>gi|256372232|ref|YP_003110056.1| DEAD/DEAH box helicase domain-containing protein [Acidimicrobium
ferrooxidans DSM 10331]
gi|256008816|gb|ACU54383.1| DEAD/DEAH box helicase domain protein [Acidimicrobium ferrooxidans
DSM 10331]
Length = 766
Score = 243 bits (620), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 212/724 (29%), Positives = 335/724 (46%), Gaps = 88/724 (12%)
Query: 221 VHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTS 280
V +E +AR A P L S L + +LY+HQA +LAG +VV+AT T+
Sbjct: 55 VRLEGHTARFAT----PRTPLPPRLSRLLAENPGQLYTHQAAVTDHALAGHHVVLATPTA 110
Query: 281 SGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDT 340
SGKSL + +P L L D +++ L ++PTKALA DQL L+ + +A I VYDGDT
Sbjct: 111 SGKSLAFLVPALARLERDPAATVLALYPTKALAHDQLARLVELERALGIDIAPAVYDGDT 170
Query: 341 TQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIR 400
+R ++D +R ++TNP L++ L +H + RIL+NL L
Sbjct: 171 PAPERARIKDRSRFVVTNPHGLNL-YLGWHEGWERILANLAL------------------ 211
Query: 401 FVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLS 460
V++DE HAY GA G +LRRL RL + +G+ P +V ++ T ANP EH L
Sbjct: 212 -VIVDETHAYTGATGGAVGWLLRRLQRL-AEAHGAAPVYVGASGTIANPAEHFARLIGDD 269
Query: 461 TLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAE 520
+ + + + PT + V D TR+ +PI++ + L
Sbjct: 270 VVLVDDDGSA----------QPTRTIAIV--------DATRS---PDHAPIAQAALLVRR 308
Query: 521 MVQHGLRCIAFCRSRKLCELV--LSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERD 578
+V+H IAF SR EL+ L+ R + E YRAGY A+ RR +E D
Sbjct: 309 LVRHRRHVIAFSNSRSHAELLARLATDRAVRVEP----------YRAGYAAQRRRALEAD 358
Query: 579 FFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAF 638
G+L ++AT+ALELGIDVG ID + GFPGSIASL+Q+ GR+GR + +L V V
Sbjct: 359 LRAGRLRAISATSALELGIDVGVIDTVVLNGFPGSIASLFQRIGRAGRSGQDALGVVVLG 418
Query: 639 EGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDE-KYFGSGL 697
P + + PE+ P E + V+ + L AA E P++ DE +++G+
Sbjct: 419 AEPAARALIADPEEFLVRPPELAVANVDQPSVVRRALELAAAERPVT--PDELRHWGAPA 476
Query: 698 SSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESE-RYEVIDMQSNEV 756
L G + D A G + P + +E R + ++
Sbjct: 477 RDAAAALVEAGTIRHD------ADGLRVPG--RRPHRFRPLVEMEPTWRLQFEGTRTTIA 528
Query: 757 LEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQ-KADLKYFTKTRDYTDIHV 815
E + ES+A + Y GA+ +H Y V ++ ++++A+ + + D + T+ Y I
Sbjct: 529 PESLSESQALREAYRGAIVLHGSQPYRVVRVDYAARVAVARPEPDRGHHTQAAWYRAI-- 586
Query: 816 SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYES 875
T++ + + LA V + +RGS ++ ++ P S
Sbjct: 587 ------APTRVRSHAIAGSLTLDLADAVLVEQVTSAKEFRGS-VLVHQRKVTAPSRSVAG 639
Query: 876 QAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLH-VVPIYVRC-NFSDLAPECPNPHDSR 933
+A+ + Q V + + LH H L+ + P+ V + + L P P
Sbjct: 640 EALILSTNQLV------DPAELPALHGVEHLLVKALAPLAVGASDLTTLTQATPAPQILF 693
Query: 934 YFPE 937
+ P+
Sbjct: 694 FAPD 697
>gi|312194217|ref|YP_004014278.1| DEAD/DEAH box helicase [Frankia sp. EuI1c]
gi|311225553|gb|ADP78408.1| DEAD/DEAH box helicase domain protein [Frankia sp. EuI1c]
Length = 858
Score = 238 bits (607), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 151/455 (33%), Positives = 231/455 (50%), Gaps = 20/455 (4%)
Query: 502 NAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSIC 561
N A S +E + L A++V G+R + F RSR+ E+V + R L AP L + I
Sbjct: 362 NGAPVRRSATAEAADLMADLVVDGVRTLVFVRSRRAAEVVANSARRALGLVAPELGEQIA 421
Query: 562 VYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQA 621
YRAGY+AE+RR +E G L GVAAT+ALELG+D+ +D T+ G+PG++ASLWQQA
Sbjct: 422 AYRAGYLAEERRELEARLRSGDLLGVAATSALELGVDISGLDATVIAGYPGTLASLWQQA 481
Query: 622 GRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALE 681
GR+GR + +LAV VA + PLD Y + +PE +F P+E D N VL L CAA E
Sbjct: 482 GRAGRAGQGALAVLVARDDPLDTYLVHHPEAVFGRPVEATVFDPDNPYVLGPQLECAAAE 541
Query: 682 HPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAI 741
P++ D FG + + L RG L P+ Y P + IR +
Sbjct: 542 LPVTEA-DLALFGPSARAVLDDLVRRGRLRRRPN-------GWYWTQRSRPD--VDIRGV 591
Query: 742 ESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADL 801
+++ + +L ++ + + V+ GAVY+HQG +++V EL+L +A +A
Sbjct: 592 GGTPVRIVEADTGRLLGTVDAATSHSTVHAGAVYLHQGVSFVVDELDLDESVAFVVRAAP 651
Query: 802 KYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIF 861
+ T RD+TDI + + ++ D LT VT+ G+ R +G +
Sbjct: 652 DWTTTARDHTDIRIV---ESSRSRPVDDDLTVFFGT---VEVTSQVVGYQRRLITTGEVL 705
Query: 862 DTVELYLPKYSYESQAVWIQVPQSV--KAVVEQNFSFRSGLHAASHALLHVVPIYVRCNF 919
V L LP ++ VW V + +A +E +HAA HA + ++P++ C+
Sbjct: 706 GDVPLDLPPRHLRTRGVWYTVSDRLLEQAAIEPA-DVPGAVHAAEHAAIGLLPLFATCDR 764
Query: 920 SDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
D+ H I +YD HPGG G +++
Sbjct: 765 WDIGGVSTALHPD-TGQTTIFVYDGHPGGAGFAER 798
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 112/276 (40%), Positives = 156/276 (56%), Gaps = 24/276 (8%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+ HVE + AR V+ PD + L++ G++ +SHQA + + AG++VV+AT T
Sbjct: 41 VTHVERVPARLGSPVDWPDWVDPLLLGRLRAAGVTAPWSHQAAAATTAHAGRSVVLATGT 100
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGD 339
+SGKSL Y LPVL AL D + ALY+ PTKALA DQLRA+ A+T ++ YDGD
Sbjct: 101 ASGKSLGYLLPVLSALLADPGARALYLAPTKALAHDQLRAIRALTL---TAVRAASYDGD 157
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T +R W+R +A ++TNPDMLH ILP H +F L L
Sbjct: 158 TPAAEREWVRAHANFVLTNPDMLHRGILPGHRRFGPFLRGL------------------- 198
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
RFVV+DE H Y+G FG H A +LRRL R+C+ YG+DP FV ++AT A+P L +
Sbjct: 199 RFVVVDECHGYRGVFGAHVAQVLRRLRRVCAR-YGADPVFVLASATVADPGVAAGRLTGV 257
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQT 495
+ ++ GSP FVL+ P L + ++ T
Sbjct: 258 DVDVVDED-GSPRGATDFVLYEPPLFLTAPRDQPGT 292
>gi|156034719|ref|XP_001585778.1| hypothetical protein SS1G_13294 [Sclerotinia sclerotiorum 1980]
gi|154698698|gb|EDN98436.1| hypothetical protein SS1G_13294 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 453
Score = 236 bits (601), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 142/406 (34%), Positives = 219/406 (53%), Gaps = 31/406 (7%)
Query: 563 YRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAG 622
YR GY +DRRRIE + F GKL G+ AT ALELG+D+G +D L +GFP +IA+L QQ+G
Sbjct: 7 YRGGYTPQDRRRIESEMFEGKLMGIIATTALELGVDIGSLDAVLTVGFPYTIANLRQQSG 66
Query: 623 RSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEH 682
R+GRR + SL+V + P DQY+M P+++F P +D QN VLE H+ CAA E
Sbjct: 67 RAGRRNKDSLSVLIGDCFPSDQYYMNNPDEIFTKPNCELQVDLQNMLVLEGHVQCAAYEM 126
Query: 683 PLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIG--HEKMPSHTISIRA 740
P+ D YF L+ ++ L F + + PS ++IR
Sbjct: 127 PIRPDEDAIYFRKNLAE-----------VAEERLVKDGLGFYHCSERYRPTPSKLVAIRD 175
Query: 741 IESERYEVIDMQ--SNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQK 798
E + + +ID+ N VLEE+E S+AFF +Y+G +++HQG+TYLVKE KIA +
Sbjct: 176 TEEDHFAIIDISHGKNIVLEELEASRAFFTLYDGGIFLHQGNTYLVKEFLPERKIAKVEL 235
Query: 799 ADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSG 858
+ + T+ RDYTDI + I + + + A A + FGF++L +
Sbjct: 236 VKVDWTTQQRDYTDI-----DPIETEAIRRIPNSLSRAFFGAIKIQQNVFGFFKLDKKRR 290
Query: 859 IIFDTVELYLPKYSYESQAVWIQVPQ-SVKAVVEQNFSFRSGLHAASHALLHVVPIYVRC 917
I+ D +++ P S+ +W+ VP+ +++ +V++ + +HAA HA+L ++P +V
Sbjct: 291 IL-DAIQVDNPPIILYSKGMWLDVPKIALEILVQKRLNIAGAIHAAEHAVLSLMPNFVIS 349
Query: 918 NFSDLAPEC-------PNPHDSRYFPERILLYDRHPG--GTGVSKQ 954
D+ EC SR P R+ YD G G+G+S +
Sbjct: 350 MPGDVRTECKAGTKEFAQKETSRKRPARLTFYDAKGGASGSGISTK 395
>gi|296132584|ref|YP_003639831.1| DEAD/DEAH box helicase [Thermincola potens JR]
gi|296031162|gb|ADG81930.1| DEAD/DEAH box helicase domain protein [Thermincola potens JR]
Length = 856
Score = 233 bits (594), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 170/583 (29%), Positives = 280/583 (48%), Gaps = 83/583 (14%)
Query: 225 DISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKS 284
D + A ++P+ L + K LY+HQA+ I + L GK+ + T T+SGKS
Sbjct: 19 DEPEKPAKYSKLPEGLATSLNLITKFEFPKGLYAHQAKCIDSILQGKHTAICTSTASGKS 78
Query: 285 LCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL--LAMTKAFDASIDIGVYDGDTTQ 342
LC++ PV+ + + ++AL+++P KALA DQ+R + LA + SI I +DGD
Sbjct: 79 LCFSYPVISEMLKNKKATALFIYPVKALANDQIRRIEQLAKKVNLNPSI-IKKFDGDIHG 137
Query: 343 KDRMWLRDNARLLITNPDMLHMSILPYHG--QFSRILSNLRLIAFSLVTTEVYLIFLFIR 400
++R R+L+ PD+LH ++L + +++R +NL R
Sbjct: 138 EERKDALARGRILVATPDVLHTTMLRENNKEEYARFFANL-------------------R 178
Query: 401 FVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLS 460
+V++DE H Y GAFG + A ++RRL ++C GSDP F+ ++AT NP H +L L
Sbjct: 179 YVILDECHVYSGAFGSNMAYVVRRLRQVCKR-NGSDPLFILASATVGNPHRHLSKLTGLE 237
Query: 461 TLELI--QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLF 518
+ +I +++GSP K +++ + + + K L
Sbjct: 238 NITVIGEKDNGSPFYGKKYIMTETDGNVETFVLK------------------------LI 273
Query: 519 AEMVQHGLRCIAFCRSRKLCE-LVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIER 577
+V + + FC +R+ E L L R +E + I YRAGY + DR IE
Sbjct: 274 KGLVNGEGKFLVFCHTRQEVEHLFLQLKRRDME-----IEHYIKPYRAGYESGDRLGIEN 328
Query: 578 DFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVA 637
G+L GV +T+ALELG+D+ +D+ + LG P + SL QQAGR GR + ++ + +
Sbjct: 329 ALRSGELKGVISTSALELGVDLPDLDICVMLGLPSTKCSLLQQAGRVGRAAQGTVVI-IK 387
Query: 638 FEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGL 697
D Y+ +P +LF+ P+E + +N ++ H CA E + GL
Sbjct: 388 TRNAFDNYYFNHPRELFEKPLEPLVLHLENRPLMIAHYACARAE-------SGNFDNPGL 440
Query: 698 SSGITTLKNRGYLSSDPSLDSSAKIFEY-----IGHEKMPSHTISIRAIESERYEVI--- 749
I +P + + KI ++ I + + P + IR I+ Y +I
Sbjct: 441 DMDIF---------GEPFIRLAHKIRDFDFPDEILYVQQPHFDVQIRCIDDPSYNIIIGY 491
Query: 750 DMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSK 792
D Q+ + +I S+ + Y AVY+H G + VK L+ S K
Sbjct: 492 DPQAPPI-GKITYSQILREAYPDAVYLHMGKPFRVKGLSHSKK 533
>gi|448621512|ref|ZP_21668409.1| putative helicase [Haloferax denitrificans ATCC 35960]
gi|445755537|gb|EMA06923.1| putative helicase [Haloferax denitrificans ATCC 35960]
Length = 712
Score = 232 bits (592), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 181/688 (26%), Positives = 303/688 (44%), Gaps = 78/688 (11%)
Query: 301 SSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPD 360
+ AL+++PTKAL+ +Q R + + YDGDT + +RD ++I+N
Sbjct: 6 ARALFLYPTKALSVNQERKVNDLFDQLGIDAVAETYDGDTKDDRKKLIRDRVDVVISNFA 65
Query: 361 MLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTAL 420
++ L H ++ I N L+A IDE H Y G G H A
Sbjct: 66 GIN-QYLDSHMKWRDIFKNCELMA-------------------IDECHTYTGVHGMHVAW 105
Query: 421 ILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLW 480
++RRL RL H YGSDP V STAT NPREH L + E+I DGSP ++ W
Sbjct: 106 VIRRLRRLLDH-YGSDPQLVCSTATIGNPREHSEHLTG-AEFEIIDEDGSPHGRREVGFW 163
Query: 481 NPT---SCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKL 537
P + + + R +++ E + + ++ ++ + F SR+
Sbjct: 164 QPPLQETGDLVEELEEDEILPSMRRNSDE------EAAGALVHLAKNDVQTLMFTDSRQG 217
Query: 538 CELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGI 597
E+ + E + Y AG RR +E G++ GV +T+ALELGI
Sbjct: 218 TEIGVKRAIEAARSHPDGKYIDVEPYHAGLSKRKRRAVENQLNAGQVDGVISTSALELGI 277
Query: 598 DVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSP 657
D+G +D T+ G+PG+ S WQ+ GR+GR SL+V+V +DQY + P+ + +
Sbjct: 278 DIGSMDATVLAGYPGTRQSFWQRIGRAGRGTTDSLSVFVPQSDAIDQYILNNPDYVLEEN 337
Query: 658 IECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFG--SGLSSGITTLKNRGYLSSDPS 715
+E ID N+ V +H++CAA E PL+ D K+FG LS I + G L D
Sbjct: 338 VEDAVIDLSNNPVYAKHILCAASERPLTEA-DTKWFGPRDRLSRAINMWQAAGQLVGD-- 394
Query: 716 LDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVY 775
LD A +Y G + P IS+ A E+Y+V + +E +++ + + + + GA+
Sbjct: 395 LDRGA---QYNGTAR-PQSGISMYATTDEQYDVRQVDGEIDMEPLDKERVYREYHPGALV 450
Query: 776 MHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTT 835
++ G Y V+E+ + +I Y T R + + +N T + ++
Sbjct: 451 LYDGDQYEVQEV-VEDRIN-------PYVTVERSNSANYTQAIHNKRITDLDVERSYDLG 502
Query: 836 AQALACT------VTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAV 889
C + + + ++ G I+ + + L S +Q +WI P+ + +
Sbjct: 503 GGYQLCAGMGTVHINYSAYNVIDMYTGE-IVEPMIPIDLAPISLRTQVMWIAFPREIVSR 561
Query: 890 V----------------------EQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECP 927
V E+ ++ GLH H ++ + P+ +R + SD+
Sbjct: 562 VLNEIPRSSYLQPEDSGEFASMGEEEYTLAGGLHGGEHGMIKMAPLELRLDNSDMGGLST 621
Query: 928 NPHDSRYFPERILLYDRHPGGTGVSKQV 955
H+ P ++D GG G + V
Sbjct: 622 LHHNEVGSP-VWFIHDAVEGGVGFAHSV 648
>gi|289441079|ref|ZP_06430823.1| putative helicase [Mycobacterium tuberculosis T46]
gi|289413998|gb|EFD11238.1| putative helicase [Mycobacterium tuberculosis T46]
Length = 407
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 148/413 (35%), Positives = 223/413 (53%), Gaps = 40/413 (9%)
Query: 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSS 281
HV ++ + P+ + A GIS +SHQAE+ + AG++VV+ T +S
Sbjct: 25 HVAELPPQAGRPRGWPEWAEPDVVDAFADRGISSPWSHQAEAAELAYAGRHVVIGTGPAS 84
Query: 282 GKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIG--VYDGD 339
GKSL Y LPVL AL+ D + ALY+ PTKAL DQLRA A+ A D+ YDGD
Sbjct: 85 GKSLAYQLPVLNALATDSRARALYLSPTKALGHDQLRAAHALAAAVPRLADVAPTAYDGD 144
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
+ + R + R+ +R L +NP+M H+S+L H +++ +L NL
Sbjct: 145 SPDEVRRFARERSRWLFSNPEMTHLSVLRNHARWAVLLRNL------------------- 185
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
RFV++DE H Y+G FG + A++LRRL RLC+ Y + P+ +F++AT+A+P +L
Sbjct: 186 RFVIVDECHYYRGVFGSNVAMVLRRLLRLCAR-YSAHPTVIFASATTASPGATAADLIGQ 244
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
+E+ + DGSP + LW P LRS D+ A + S+ +E + + A
Sbjct: 245 PVVEVTE-DGSPRGARTVALWEP--ALRS-------DVIGEHGAPVRRSA-GAEAARVMA 293
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDF 579
+++ G + + F RSR+ EL R L + AP L D++ YRAGY+AEDR + + +
Sbjct: 294 DLIVEGAQTLTFVRSRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQPW 353
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS---GRRER 629
+A T ALELG+D+ +D + GFPG W ++G S GRR R
Sbjct: 354 PRATWPWLATTYALELGVDIAGLDAVVLAGFPGR----WPRSGSSEPVGRRAR 402
>gi|306834695|ref|ZP_07467770.1| DEAD/DEAH box family ATP-dependent RNA helicase, partial
[Corynebacterium accolens ATCC 49726]
gi|304569424|gb|EFM44914.1| DEAD/DEAH box family ATP-dependent RNA helicase [Corynebacterium
accolens ATCC 49726]
Length = 465
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 140/437 (32%), Positives = 216/437 (49%), Gaps = 26/437 (5%)
Query: 529 IAFCRSRKLCELVLSYTREILEETA--PHLVDSICVYRAGYVAEDRRRIERDFFGGKLCG 586
+ F RSR+ E+V E L + P I YRAGY+AEDRRR+E+ L G
Sbjct: 2 MTFVRSRRSAEVVAMVAAETLSGSLGRPDFAQRIAAYRAGYLAEDRRRLEQALDDASLLG 61
Query: 587 VAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYF 646
VA T+ALELGIDVG +D + GFPG++AS WQQAGR+GRR + SL V VA + P+D Y
Sbjct: 62 VATTSALELGIDVGGLDAVVTAGFPGTVASFWQQAGRAGRRGQGSLVVLVARDEPMDTYL 121
Query: 647 MKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGL-----SSGI 701
+ +P+ L P+E + N +L H+ CAA+E PL + ++ S + G+
Sbjct: 122 VHHPDALLGKPVEASVFNPTNPYILFGHIYCAAVEKPLDDVTIAEWGASEVIHQLAEQGL 181
Query: 702 TTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIE 761
+ RG+ + S+ ++ H +S+R E ++D +L I+
Sbjct: 182 VRRRERGWFAVPIPASSAEELSPETAHSA-----VSLRGGAGEEVMIVDASDGRLLGTID 236
Query: 762 ESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNA 821
++A QV+ GAVY+HQG +++++EL LS +AL + +Y T R TDI +
Sbjct: 237 AARATSQVHPGAVYLHQGESFVIEELLLSDYVALARPETPEYSTTPRSTTDIRI------ 290
Query: 822 YATKISKDQLTKTTAQALACTV---TTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAV 878
D L + V T Y++ G I D + L LP+ ++AV
Sbjct: 291 ---VREADNLVNYSPGLWVADVEVEVTDRVTGYQVRLADGTIGDDIPLDLPEQRLTTRAV 347
Query: 879 WIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPE 937
+ P ++ A+ LHAA HA + ++P+ C+ D+ H P
Sbjct: 348 AYTIDPLALSAMGITAADIPGTLHAAEHAAIGLLPLIATCDRWDIGGVSTALHADTQLPT 407
Query: 938 RILLYDRHPGGTGVSKQ 954
+ +YD HPGG G +++
Sbjct: 408 -VFVYDGHPGGAGFAEE 423
>gi|260940809|ref|XP_002615244.1| hypothetical protein CLUG_04126 [Clavispora lusitaniae ATCC 42720]
gi|238850534|gb|EEQ39998.1| hypothetical protein CLUG_04126 [Clavispora lusitaniae ATCC 42720]
Length = 1266
Score = 226 bits (575), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 158/497 (31%), Positives = 243/497 (48%), Gaps = 91/497 (18%)
Query: 526 LRCIAFCRSRKLCELVLSYTREILEETAP-----HLVDSICVYRAGYVAEDRRRIERDFF 580
++ I FC R++CELV+ R I+ E P H D I YR GY DRR IE F
Sbjct: 682 IKAIVFCPIRQMCELVIKEVRTIIRENIPQWHGLHERD-IMAYRGGYSKSDRRAIEHRMF 740
Query: 581 GGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS--GRRERPSLAVYVAF 638
G+L + ATNALELGID+ +DV + GFP S ++L QQ GR+ GR + SLA+ V
Sbjct: 741 SGQLRAIVATNALELGIDLSDLDVVISCGFPQSKSNLHQQFGRAGRGRDSKGSLAILVCG 800
Query: 639 EGPLDQYFMKYPEKLFKSPIECCHI-------------DAQNHKVLEQHLVCAALEHPLS 685
GP+D+Y++ K+P+E C NH V HL CAA E P+
Sbjct: 801 AGPVDRYYL-------KNPLELCDTRSYEDLGVAGLLDSTSNHVVKAMHLQCAAFEDPID 853
Query: 686 LIYDEKYFG----SGLSSGITTL-------KNRGYLSSDPSLDSSAKIFEYIGHEKMPSH 734
LI D ++F ++ L +R +DP Y+ P+
Sbjct: 854 LILDRRWFSPHNDPKMNEDFIRLCQENLHPDDRNEYRTDP---------RYL---PWPAE 901
Query: 735 TISIRAIESERYEVIDMQSNE--VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSK 792
+S+RA+E Y V+D+ +N ++EEIEES+ F +YEG +++HQG+ YLVKE N K
Sbjct: 902 KVSLRAMEQTTYAVVDITNNRNIIIEEIEESRTSFTLYEGGIFLHQGYPYLVKEFNPDGK 961
Query: 793 IALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTV-------TT 845
A ++ ++ + T+ RD++D+ + ++ K + A V T
Sbjct: 962 YAKVERVNVSWVTQQRDFSDV------DPVQIELVKQLFPPSVATPTDIPVFYGQVDTTI 1015
Query: 846 TWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSV-KAVVEQNFSFRSGLHAAS 904
FGF+++ R I+ + VE+ P S+ WI +P V A+ E+N S G+HAA
Sbjct: 1016 VVFGFFKVNRKQEIL-EVVEVNNPPIVLRSKGFWIDIPHGVLNAIKEKNLSAAGGIHAAQ 1074
Query: 905 HALLHVVPIYV--------RCNFS------DLAPECPNP-------HDSRYFPERILLYD 943
HA+++++PI++ F+ +L EC P R P R++ +D
Sbjct: 1075 HAIMNILPIFLIGGATTNPNARFTSTLGDAELTTECKAPEKEFAQRQTKRKRPARLIFHD 1134
Query: 944 RHPG--GTGVSKQVTDM 958
G GTG+S + ++
Sbjct: 1135 SKGGAQGTGMSAKTFEL 1151
Score = 153 bits (386), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 96/270 (35%), Positives = 145/270 (53%), Gaps = 34/270 (12%)
Query: 229 RKAVLVEIPDALLDNTKSAL-KSTGI--SKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
R A PD + +AL +S I ++LYSHQA ++ A G + +V+T TSSGKSL
Sbjct: 263 RPANYAPAPDIVHPEAAAALWRSAHIDSARLYSHQAAALSALSRGHHTIVSTATSSGKSL 322
Query: 286 CYNLPVLEALSHDL---------SSSALYMFPTKALAQDQLRALLAMTKAFDA-SIDIGV 335
Y LP++ + D +++AL++FPTKALAQDQ R LLA+ +I +
Sbjct: 323 VYQLPIISDILRDADLGANTDRRTATALFVFPTKALAQDQKRHLLALLAQLPGRNIIVDT 382
Query: 336 YDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLI 395
YDGDT+ KDR +R A ++ TNPD +H +ILP + + SN R
Sbjct: 383 YDGDTSSKDRRHVRSFADIIFTNPDAIHAAILP-----NALDSNWR------------DF 425
Query: 396 FLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREH--- 452
+++VV+DE H Y+G FG + ++ RL R+ + + P +V +AT +N EH
Sbjct: 426 LACLKYVVVDELHVYRGTFGVNVGFVMARLNRMLERL-AAHPLYVSCSATISNAEEHFRA 484
Query: 453 CMELANLSTLELIQNDGSPCAQKLFVLWNP 482
L + +E + DGSP +K+ V+W P
Sbjct: 485 VCALPDDDVVEHVDEDGSPATEKMLVVWEP 514
>gi|89893420|ref|YP_516907.1| hypothetical protein DSY0674 [Desulfitobacterium hafniense Y51]
gi|89332868|dbj|BAE82463.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 878
Score = 225 bits (574), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 195/747 (26%), Positives = 327/747 (43%), Gaps = 82/747 (10%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATM 278
+++H E R A + + + L + +K LY HQA+SI ++ AG+N+V+ T
Sbjct: 17 EVIHTESKEPRAARICQ-AENLTPIIQETIKEILPLGLYRHQAKSIDSACAGENIVICTG 75
Query: 279 TSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDG 338
T+SGK+ + +P L+ L D + A++ +PTKAL+ DQ L ++ F + +DG
Sbjct: 76 TASGKTFAFAIPALQTLLKDPKARAIFFYPTKALSGDQKSKLEELSSRFGLEDGVYSFDG 135
Query: 339 DTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLF 398
DT R R+L+ PD+LH ++L LSN + + F
Sbjct: 136 DTPFNRRKEAIKKGRILLCTPDVLHATMLR--------LSNEK---------DYQEFFAH 178
Query: 399 IRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELAN 458
+ V++DE H Y GAFG + A ++RRL ++C + G++P F+ ++ATS +P+ H +L
Sbjct: 179 LTHVILDECHIYSGAFGSNMAYLMRRLRQVCRRL-GNEPQFLAASATSKDPKGHLEKLVG 237
Query: 459 LSTLELI-QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYL 517
+ L + DGSP + F + A + V L
Sbjct: 238 VPFQVLGEEEDGSPSGGRNFYI-----------------------AISPNMPEEQAVIQL 274
Query: 518 FAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIER 577
A +++ R I F +RK+ E V + P + + YR+G+ DR+RIE+
Sbjct: 275 IARLIEDQKRFIVFSHTRKITEQVFMDLINLF----PEVEGKVMPYRSGFEHGDRQRIEQ 330
Query: 578 DFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRR-ERPSLAVYV 636
G L GV +T+ALELG+D+ ++ + LG P + S WQ+ GR GR + + +
Sbjct: 331 ALRKGDLFGVISTSALELGVDLSEMEYCILLGIPSTAMSFWQRDGRVGRSPQSQGQVIII 390
Query: 637 AFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAAL-----EHPLSLIYDEK 691
+D Y+ + EKL +E I N +++ H CA EHP D +
Sbjct: 391 PSTNSVDDYYRHHSEKLLTRELEDLVIHLDNWQLILFHFACARAESGNHEHP---NLDPE 447
Query: 692 YFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDM 751
FG + ++ LD + +I I E P + IR I+ + YE++
Sbjct: 448 IFGQDFAQLADKIE---------ELDITDEIL--IAPE--PHLVMGIRGIDDKTYEILSS 494
Query: 752 QSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYT 811
+ L I S+ + Y AVY H G Y V+ LN +K + T Y
Sbjct: 495 GGEKRLGTISYSQILREAYPQAVYRHMGEAYRVEWLNTKHCTIRVKKEERNLATSPIGYI 554
Query: 812 DIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKY 871
+ N +I + + T T+ YR R I +
Sbjct: 555 AVKERINNGTTFRRIRWGNALEMLHTTMTVTTVTSG---YRERRDGDWINQEKYPSPLQR 611
Query: 872 SYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPEC-PNPH 930
S+ VW++ S ++++N L+A +HA ++ I+ C+ +++A C N
Sbjct: 612 RVISEGVWLKF-GSEFGMIKKN-----ALNALAHAFSNIYSIWFPCDAAEVATHCVVNAK 665
Query: 931 DSRYFPERILLYDRHPGGTGVSKQVTD 957
D R+ ++D GG G++ D
Sbjct: 666 DKS---SRLYIFDTTSGGLGITSGFFD 689
>gi|429216793|ref|YP_007174783.1| helicase family protein with metal-binding cysteine cluster
[Caldisphaera lagunensis DSM 15908]
gi|429133322|gb|AFZ70334.1| helicase family protein with metal-binding cysteine cluster
[Caldisphaera lagunensis DSM 15908]
Length = 752
Score = 225 bits (573), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 196/738 (26%), Positives = 325/738 (44%), Gaps = 133/738 (18%)
Query: 245 KSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSAL 304
K+AL + GI KLY Q +++ + L + V+ T +GK+ + +P+L+ L + AL
Sbjct: 54 KNALINYGIIKLYKFQKDALDSILNNNDTVITAGTGTGKTEAFLIPILDELLKNKEERAL 113
Query: 305 YMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDN-ARLLITNPDMLH 363
++PTK+L +DQ+ L + K D I G+ DGDT K+R + +N ++LI+NPDM+H
Sbjct: 114 LIYPTKSLERDQISRLSNIVK--DLGISYGIIDGDTPAKERAKIYENPPQILISNPDMIH 171
Query: 364 MSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILR 423
+ + ++++ IF IRFVV+DE H YKG FG H IL
Sbjct: 172 LGL--------------------SLSSDFRKIFRSIRFVVLDEMHVYKGIFGSHMKWILY 211
Query: 424 RLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPT 483
RL L ++ F+ S AT NP E +L +K+ V++ P
Sbjct: 212 RLSSLSKNIL-----FIGSGATIGNPEEMGEKL---------------FGRKVKVVYGP- 250
Query: 484 SCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLS 543
K + + + S + SY+ + +++ L+ +AF S+++ EL+
Sbjct: 251 --------KRRKGLAIHVFIDHGYMSRWTFSSYIISSLIKKNLKVLAFTDSQQMSELISR 302
Query: 544 YTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHID 603
+R+ ++ V+R+G AE R+ +ER+ G + GV AT+ LELGIDVG +D
Sbjct: 303 ISRKSYNT-------NVLVHRSGLSAETRKNVERELKEGIINGVVATSTLELGIDVGDLD 355
Query: 604 VTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHI 663
+ P S +S Q+AGR+GRRE P L V + + P++ Y++ P+K F + I
Sbjct: 356 AVVMTSLPKSYSSYLQRAGRAGRRENPGLVVTIMGDDPIESYYLNNPDKYFSQDPDPGFI 415
Query: 664 DAQNHKVLEQHLVCAAL-----------EHPLSLIYD----------EKYFGSGLSSGIT 702
+ +N ++L+ H V L E L ++ D SG
Sbjct: 416 EPKNKEILKLHFVAYLLQKGFVKKDNLPEEFLDVLKDLENENYINNNNDVLYPNWKSGKA 475
Query: 703 TLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEE 762
+ N SS P ++ K + IG +MP
Sbjct: 476 FVANYSIRSSGPIINIYYK-NKRIGFREMP------------------------------ 504
Query: 763 SKAFFQVYEGAVYMHQGHTYLVKELNLSS-KIALCQKADLKYFTKT-RDYTDIHVSGGNN 820
+A + +Y A+Y H G YL +L++ S K + + D+ ++TK D I V
Sbjct: 505 -QALYDLYPNAIYYHSGEVYLSTKLDIDSYKAEVTKLNDISFYTKPLYDIYVIEVIPREK 563
Query: 821 AYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWI 880
A I T + ++ T + + G+ I E + K++Y ++ V
Sbjct: 564 RIAGTIP------LTYGDVHISIEVTGYVIKDEYSGNTISTSYYETPI-KWNYWTKGVLT 616
Query: 881 QVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAP-ECPNPHDSRYFPERI 939
+ P+ + E+ S HA H L+ + + +DL P+ H I
Sbjct: 617 RYPEILFESGEKKI---SSYHALEHVLISASRPIIGASDTDLGGISYPSGH--------I 665
Query: 940 LLYDRHPGGTGVSKQVTD 957
++YD GG G SK V D
Sbjct: 666 VIYDSSIGGHGGSKLVFD 683
>gi|55379914|ref|YP_137764.1| ATP-dependent helicase [Haloarcula marismortui ATCC 43049]
gi|55232639|gb|AAV48058.1| ATP-dependant helicase [Haloarcula marismortui ATCC 43049]
Length = 656
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 169/642 (26%), Positives = 284/642 (44%), Gaps = 92/642 (14%)
Query: 361 MLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTAL 420
MLH ILP+ RL + F + VV+DE H Y+G FG H +L
Sbjct: 1 MLHYGILPH---------AHRLWDW---------FFQRLETVVVDEVHGYRGVFGSHVSL 42
Query: 421 ILRRLCRLCSHV-YGSD----------------PSFVFSTATSANPREHCMELANLS--T 461
++RRL R+ G D P +V +AT NP EH + +
Sbjct: 43 VMRRLQRIAERFDAGGDSSESNGRRGDNATAGGPEWVCCSATIGNPVEHAAAVTGQPEPS 102
Query: 462 LELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEM 521
L+ D S + ++LWNP + D + + S E LF ++
Sbjct: 103 FVLVDEDASASGPRHWLLWNPP------------EYDGDGWGSGRRKSNHVETKQLFVDL 150
Query: 522 VQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LVDSICVYRAGYVAEDRRRIERDFF 580
V+ GL+ + F SR+ E S + + L + H L D + Y+A + RR +E+
Sbjct: 151 VERGLQTVVFAGSRQTAERYASDSADELRKRGEHDLADGVGAYQAALTDDRRRELEQGLQ 210
Query: 581 GGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEG 640
G L GV +T+ALELG+DVG +D L G+PG+ +QQAGR+GR P+L V E
Sbjct: 211 SGDLRGVWSTSALELGVDVGGLDAVLLDGYPGTRMRAFQQAGRAGRGTDPALVALVGGED 270
Query: 641 PLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSG 700
LDQY ++ P+ LF++ E + +N ++L H+ AA E+ LS D+++FG
Sbjct: 271 QLDQYVLRNPDALFETGAEQAVTNPENEQLLPGHVHAAACENWLS-PDDDRHFGETFPDV 329
Query: 701 ITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEI 760
++ L++ G L + + ++G+ P H +++R ++ +++ +V+ ++
Sbjct: 330 VSGLESAGKLDR----RQTDQGMRWLGN-GSPHHEMNLRTVDDGEVKLV--AKGDVIAKL 382
Query: 761 EESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNN 820
A + GA+Y HQG Y V +L+L++ +A + YFT+ I V
Sbjct: 383 SVEDALRDAHPGAIYHHQGRRYEVTDLDLNAGVAELDRTWADYFTRVLHDKTITVEADLA 442
Query: 821 AYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWI 880
+D + + + +T G+ R SG + L LP+ + E++A++
Sbjct: 443 ERRLPTREDVPVRFASVTMRKQIT----GYERRDGSSGEVLGQRSLDLPETTLETKALYH 498
Query: 881 QVPQSVKAVVEQN-FSFRSG----------------------------LHAASHALLHVV 911
VP ++ + Q + SG +HAA HA++ +
Sbjct: 499 TVPSDLEREIRQGAYGAESGSESGDGVQSGDAVTDGGDAGDDGDFPGAIHAAEHAMISMF 558
Query: 912 PIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSK 953
P C+ D+ H P I +YD +PGG G+++
Sbjct: 559 PFEYLCDRGDIGGLSTPRHPHTGEPT-IFIYDGYPGGIGLTR 599
>gi|420152138|ref|ZP_14659206.1| PF09369 domain protein, partial [Actinomyces massiliensis F0489]
gi|394765403|gb|EJF46864.1| PF09369 domain protein, partial [Actinomyces massiliensis F0489]
Length = 543
Score = 223 bits (569), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 146/459 (31%), Positives = 232/459 (50%), Gaps = 17/459 (3%)
Query: 497 MDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHL 556
+D T + + + S+ + E + L A+++ G R + F RSR+ E+V + R IL + P L
Sbjct: 32 LDPTEDPSARRSA-VVEAAELLADLLSVGARALVFVRSRRSAEIVAEHARRILGMSLPEL 90
Query: 557 VDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIAS 616
+ ++ YR GY+ E+RR +ERD G+L +A TNALELGIDV +D L G+PG+ S
Sbjct: 91 MGTVAAYRGGYLPEERRALERDLRRGRLRALATTNALELGIDVTGLDAVLIAGWPGTRVS 150
Query: 617 LWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLV 676
L QQAGR+GR +AV VA + PLD Y + +PE + +P E D N VL HL
Sbjct: 151 LGQQAGRAGRAGTRGVAVLVAGDNPLDAYLVHHPEAVLAAP-EATVFDPANPYVLAPHLC 209
Query: 677 CAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTI 736
AA E PL D FG S + L RG L P+ F P
Sbjct: 210 AAASEAPLREA-DLALFGLPDESLLADLAARGALRRRPT-----GWFWNTSLPGRPQDLT 263
Query: 737 SIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALC 796
S+R VID + V+ ++ + A V+EGAVY+HQG +Y+V EL + + +
Sbjct: 264 SLRGDGPPEVPVIDSPTGAVIGTVDGAAADSTVHEGAVYIHQGRSYVVTELTEEAAL-VT 322
Query: 797 QKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRG 856
+KA + Y T+ R+++ + + G +A ++ D + + + VT+ G+ L
Sbjct: 323 EKAAIGYRTRAREHSSVRIVGERDA---QMWSDGIRWSFG---SVEVTSQVIGYTELTLP 376
Query: 857 SGIIFDTVELYLPKYSYESQAVWIQVPQSV-KAVVEQNFSFRSGLHAASHALLHVVPIYV 915
+ + EL +P++ + AVW +P + +A LHAA HA + ++P+
Sbjct: 377 TMEVVAQHELDMPEHVLPTAAVWWTIPADLTQAAGIAPGDLPGALHAAEHASIGMLPLLA 436
Query: 916 RCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
C+ D+ + H P + ++D H GG G +++
Sbjct: 437 TCDRWDIGGLSISSHPQTGAPT-VFVHDGHAGGAGFAER 474
>gi|422384222|ref|ZP_16464363.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Propionibacterium
acnes HL096PA3]
gi|422429172|ref|ZP_16506077.1| conserved hypothetical protein [Propionibacterium acnes HL072PA2]
gi|422447717|ref|ZP_16524449.1| conserved hypothetical protein [Propionibacterium acnes HL036PA3]
gi|422479465|ref|ZP_16555875.1| conserved hypothetical protein [Propionibacterium acnes HL063PA1]
gi|422481772|ref|ZP_16558171.1| conserved hypothetical protein [Propionibacterium acnes HL036PA1]
gi|422487852|ref|ZP_16564183.1| hypothetical protein HMPREF9568_01454 [Propionibacterium acnes
HL013PA2]
gi|422489295|ref|ZP_16565622.1| hypothetical protein HMPREF9563_00336 [Propionibacterium acnes
HL020PA1]
gi|422497769|ref|ZP_16574042.1| conserved hypothetical protein [Propionibacterium acnes HL002PA3]
gi|422503989|ref|ZP_16580226.1| conserved hypothetical protein [Propionibacterium acnes HL027PA2]
gi|422504699|ref|ZP_16580933.1| conserved hypothetical protein [Propionibacterium acnes HL036PA2]
gi|422514157|ref|ZP_16590278.1| conserved hypothetical protein [Propionibacterium acnes HL087PA2]
gi|422535107|ref|ZP_16611030.1| conserved hypothetical protein [Propionibacterium acnes HL072PA1]
gi|422538551|ref|ZP_16614425.1| conserved hypothetical protein [Propionibacterium acnes HL013PA1]
gi|422552902|ref|ZP_16628689.1| conserved hypothetical protein [Propionibacterium acnes HL005PA3]
gi|422554869|ref|ZP_16630639.1| conserved hypothetical protein [Propionibacterium acnes HL005PA2]
gi|422567515|ref|ZP_16643141.1| conserved hypothetical protein [Propionibacterium acnes HL002PA2]
gi|313765305|gb|EFS36669.1| conserved hypothetical protein [Propionibacterium acnes HL013PA1]
gi|313806371|gb|EFS44878.1| conserved hypothetical protein [Propionibacterium acnes HL087PA2]
gi|313822014|gb|EFS59728.1| conserved hypothetical protein [Propionibacterium acnes HL036PA1]
gi|313824090|gb|EFS61804.1| conserved hypothetical protein [Propionibacterium acnes HL036PA2]
gi|313826457|gb|EFS64171.1| conserved hypothetical protein [Propionibacterium acnes HL063PA1]
gi|314926591|gb|EFS90422.1| conserved hypothetical protein [Propionibacterium acnes HL036PA3]
gi|314961344|gb|EFT05445.1| conserved hypothetical protein [Propionibacterium acnes HL002PA2]
gi|314980312|gb|EFT24406.1| conserved hypothetical protein [Propionibacterium acnes HL072PA2]
gi|314987397|gb|EFT31488.1| conserved hypothetical protein [Propionibacterium acnes HL005PA2]
gi|314989062|gb|EFT33153.1| conserved hypothetical protein [Propionibacterium acnes HL005PA3]
gi|315082697|gb|EFT54673.1| conserved hypothetical protein [Propionibacterium acnes HL027PA2]
gi|315086056|gb|EFT58032.1| conserved hypothetical protein [Propionibacterium acnes HL002PA3]
gi|315087641|gb|EFT59617.1| conserved hypothetical protein [Propionibacterium acnes HL072PA1]
gi|327333294|gb|EGE75014.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Propionibacterium
acnes HL096PA3]
gi|327445229|gb|EGE91883.1| hypothetical protein HMPREF9568_01454 [Propionibacterium acnes
HL013PA2]
gi|328758429|gb|EGF72045.1| hypothetical protein HMPREF9563_00336 [Propionibacterium acnes
HL020PA1]
Length = 536
Score = 223 bits (568), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 147/497 (29%), Positives = 245/497 (49%), Gaps = 53/497 (10%)
Query: 432 VYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLN 491
++G+DP F+ S+ATS N E L + +E++ D SP + VLW P + +
Sbjct: 1 MHGADPVFLLSSATSTNAAEAGTRLLGVEKVEVVDEDCSPHPGRDVVLWQPAESIST--- 57
Query: 492 KSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEE 551
+ + L A++ GL+ I F SR L E++ ++ ++ +
Sbjct: 58 ---------------------DATGLVADLADAGLQTICFVASRSLAEVISAHAQDRVTS 96
Query: 552 TAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFP 611
A + YRAGY+ EDRRRIE G + V ATNALELG+D+ +D + G+P
Sbjct: 97 GA-----RVTAYRAGYLPEDRRRIEARLQDGSVRAVVATNALELGVDISGMDAVVIAGYP 151
Query: 612 GSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVL 671
G +++LWQQAGR+GR R +L V +A E PLDQY ++PE LF S +E + N VL
Sbjct: 152 GRLSALWQQAGRAGRSGRDALVVLMARENPLDQYLFEHPELLFSSSVESTVLHPDNPYVL 211
Query: 672 EQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKM 731
H+ AA E LS DE+++GS + TL + L ++F + E+
Sbjct: 212 GPHVAAAAQEAYLSPA-DEEFYGSAFAGICKTLTGQNVLRR-----RGNRLF-WTRPERA 264
Query: 732 PSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSS 791
I +R+ + ++ID+ + V+ ++E+ A V+ GAVY+HQG +LV E N
Sbjct: 265 -VDAIDLRSAAGKGIDIIDVSTGRVIGGVDEAAADRTVHPGAVYLHQGDQWLVDEYNPVE 323
Query: 792 KIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQA-LACT---VTTTW 847
AL + Y+T+ + +A +I +++ + +AC +T
Sbjct: 324 HHALVHQDLPGYWTQPQ-----------SASTVRILREERRRACGPGYVACGQVELTEQV 372
Query: 848 FGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSG-LHAASHA 906
G+ R + ++D+V L +P ++ +QA W +P V ++ + +G H A H
Sbjct: 373 VGYLRRDEITNDVWDSVALEMPTHTMITQACWWVIPDKVVDDLKFDAVHLAGAAHGAEHT 432
Query: 907 LLHVVPIYVRCNFSDLA 923
+ ++P+Y C+ D+
Sbjct: 433 AIGLLPMYSPCDRWDVG 449
>gi|400293719|ref|ZP_10795570.1| PF09369 domain protein, partial [Actinomyces naeslundii str. Howell
279]
gi|399901172|gb|EJN84076.1| PF09369 domain protein, partial [Actinomyces naeslundii str. Howell
279]
Length = 579
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 158/526 (30%), Positives = 244/526 (46%), Gaps = 51/526 (9%)
Query: 468 DGSPCAQKLFVLWNPTSCLRSVLNKSQTDMD---DTRNAANKTS-----------SPISE 513
DG+P ++ LW P LR D+D D+ AA S S + E
Sbjct: 1 DGAPAGERTLALWQP--ALRDPWMLPAPDVDPAQDSARAAEPDSGDPGEDPSARRSAVVE 58
Query: 514 VSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRR 573
+ L +++ G R + F RSR+ E+V R L + P L+ ++ YR GY+ E+RR
Sbjct: 59 AAELLVDLLSVGARALVFVRSRRSAEIVAERARHTLGLSLPELIGTVSAYRGGYLPEERR 118
Query: 574 RIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLA 633
+E D G+L +A TNALELGIDV +D L G+PG+ SL QQAGR+GR LA
Sbjct: 119 ALEADLRSGRLRALATTNALELGIDVTGLDAVLIAGWPGTRVSLGQQAGRAGRAGSRGLA 178
Query: 634 VYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYF 693
V +A + PLD Y + +PE +F +P E D N VL HL AA E PL D F
Sbjct: 179 VLIASDNPLDAYLVHHPEAVFAAP-EATVFDPANPYVLAPHLCAAASEAPLR-AEDLALF 236
Query: 694 GSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQS 753
G + + L++RG L P+ F + P S+R V++ +
Sbjct: 237 GLPDDALLRELESRGALRRRPT-----GWFWNVNLPGRPQDLTSLRGDGPPEVPVVEADT 291
Query: 754 NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALC-QKADLKYFTKTRDYTD 812
V+ ++ + A V+EGAVY+HQG Y+V+E L+ +AL Q+A + Y T+ R +
Sbjct: 292 GAVIGTVDGAAADSTVHEGAVYVHQGRVYVVEE--LADDVALVRQRAAVGYRTRARSRSS 349
Query: 813 IH-------------VSGGNN-----AYATKISKDQLTKTTAQALACT-----VTTTWFG 849
+ V GG+ + + D A A+ + VT+ G
Sbjct: 350 VRIIAEREQQVWGRPVGGGDRLDDVPEPSAHTADDGREAPGAAAITWSFGSVEVTSQVTG 409
Query: 850 FYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQ-SVKAVVEQNFSFRSGLHAASHALL 908
+ R+ G + L + ++ + AVW +PQ + +A + LHAA HA +
Sbjct: 410 YQRMALPGGEVVSQHALEMDEHVLPTAAVWWTIPQETCEAAGLEPTDLPGALHAAEHASI 469
Query: 909 HVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
++P+ C+ D+ H P + ++D H GG G +++
Sbjct: 470 GMLPLLATCDRWDIGGLSTAAHPQTGAPT-VFVHDGHAGGAGFAER 514
>gi|386845436|ref|YP_006263449.1| Putative ATP-dependent helicase HRQ1 [Actinoplanes sp. SE50/110]
gi|359832940|gb|AEV81381.1| Putative ATP-dependent helicase HRQ1 [Actinoplanes sp. SE50/110]
Length = 850
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 154/451 (34%), Positives = 219/451 (48%), Gaps = 35/451 (7%)
Query: 509 SPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYV 568
S + E + L + V G R +AF RSR+ E+V + R L+E P L + YR GY+
Sbjct: 361 SALRETADLLTDAVIAGTRTLAFVRSRRGAEVVAAVARRSLDEVVPGLGSRVAAYRGGYL 420
Query: 569 AEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRE 628
EDRR IER G L G+A+TNALELG+D+ +D L G+PG+ ASLWQQAGR+GR
Sbjct: 421 REDRRAIERALLAGDLLGLASTNALELGVDLAGLDAVLICGWPGTRASLWQQAGRAGRAG 480
Query: 629 RPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIY 688
+LAV +A + PLD Y + +PE LF P+E +D N VL L CAA E PL+
Sbjct: 481 GAALAVLIARDDPLDTYLVHHPEALFGHPVEATVLDPANPYVLGPQLCCAASEAPLTE-K 539
Query: 689 DEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEV 748
D FG I L G L PS Y P + +R +V
Sbjct: 540 DLPLFGPATRPVIDQLVAEGALRRRPS-------GWYWTERGRPD--VDLRGSGGAPVQV 590
Query: 749 IDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTR 808
++ + +L +++ + ++EGAV++HQG TY+V EL+L AL + D + T R
Sbjct: 591 VEAATGRLLGTVDQGSSHVMLHEGAVHLHQGTTYVVDELDLEDATALVHQEDPDWSTHAR 650
Query: 809 DYTDIHV--------SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGII 860
D TD+ V +G + ++ VT+ + R GSG +
Sbjct: 651 DVTDVSVVRVFSYADAGPVGLFLGEVD---------------VTSQVVSYQRRRLGSGEV 695
Query: 861 FDTVELYLPKYSYESQAVWIQV-PQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNF 919
D L LP + AVW V PQ++ A + LHAA HA + ++P+ C+
Sbjct: 696 IDIRPLDLPVRELRTVAVWFTVSPQALAAAGIEPNDVPGALHAAEHAAIGLLPLMATCDR 755
Query: 920 SDLAPECPNPHDSRYFPERILLYDRHPGGTG 950
D+ H P + +YD HPGG G
Sbjct: 756 WDIGGLSTANHPDTEAPT-VFVYDGHPGGAG 785
Score = 176 bits (445), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 107/280 (38%), Positives = 149/280 (53%), Gaps = 26/280 (9%)
Query: 203 PLEMVEHLRKGIGSQGQ--MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQ 260
P E++ LR G+ GQ + HVE + AR P + A GI+ + HQ
Sbjct: 8 PAELLHRLRARAGNAGQSPITHVERVPARTGRPAPWPSWTHPEVREAFARQGITAPWQHQ 67
Query: 261 AESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL 320
A++ + G +VV+AT T+SGKSL Y LP L AL+ D ++ LY+ PTKALA DQLR L
Sbjct: 68 ADAAGLAFEGTHVVLATGTASGKSLAYQLPALTALTTDPKATVLYLAPTKALAADQLRKL 127
Query: 321 LAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNL 380
T+ A I DGD +++R W+R +AR L+TNPDMLH S+LP H +++
Sbjct: 128 ---TRLGLADIRPAALDGDVPREEREWIRQHARFLLTNPDMLHHSLLPGHSRWA------ 178
Query: 381 RLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFV 440
F + +VVIDE HAY+G FG H A +LRRL R + YG P+F+
Sbjct: 179 -------------TFFRRLTYVVIDECHAYRGVFGSHVAHVLRRLRRTTA-RYGGSPTFI 224
Query: 441 FSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLW 480
++ATS +P L + + + D SP F LW
Sbjct: 225 LASATSGDPAGSTSRLLG-TPVTAVTEDASPRGAVTFALW 263
>gi|422509169|ref|ZP_16585327.1| conserved hypothetical protein [Propionibacterium acnes HL046PA2]
gi|313817524|gb|EFS55238.1| conserved hypothetical protein [Propionibacterium acnes HL046PA2]
Length = 536
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 146/497 (29%), Positives = 244/497 (49%), Gaps = 53/497 (10%)
Query: 432 VYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLN 491
++G+DP F+ S+ATS N E L + +E++ D SP + VLW P + +
Sbjct: 1 MHGADPVFLLSSATSTNAAEAGTRLLGVEKVEVVDEDCSPHPGRDVVLWQPAESIST--- 57
Query: 492 KSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEE 551
+ + L A++ GL+ I F SR L E++ ++ ++ +
Sbjct: 58 ---------------------DATGLVADLADAGLQTICFVASRSLAEVISAHAQDRVTS 96
Query: 552 TAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFP 611
A + YRAG + EDRRRIE G + V ATNALELG+D+ +D + G+P
Sbjct: 97 GA-----QVTAYRAGDLPEDRRRIEARLQDGSVRAVVATNALELGVDISGMDAVVIAGYP 151
Query: 612 GSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVL 671
G +++LWQQAGR+GR R +L V +A E PLDQY ++PE LF S +E + N VL
Sbjct: 152 GRLSALWQQAGRAGRSGRDALVVLMARENPLDQYLFEHPELLFSSSVESTVLHPDNPYVL 211
Query: 672 EQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKM 731
H+ AA E LS DE+++GS + TL + L ++F + E+
Sbjct: 212 GPHVAAAAQEAYLSPA-DEEFYGSAFAGICKTLTGQNVLRR-----RGNRLF-WTRPERA 264
Query: 732 PSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSS 791
I +R+ + ++ID+ + V+ ++E+ A V+ GAVY+HQG +LV E N
Sbjct: 265 -VDAIDLRSAAGKGIDIIDVSTGRVIGGVDEAAADRTVHPGAVYLHQGDQWLVDEYNPVE 323
Query: 792 KIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQA-LACT---VTTTW 847
AL + Y+T+ + +A +I +++ + +AC +T
Sbjct: 324 HHALVHQDLPGYWTQPQ-----------SASTVRILREERRRACGPGYVACGQVELTEQV 372
Query: 848 FGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSG-LHAASHA 906
G+ R + ++D+V L +P ++ +QA W +P V ++ + +G H A H
Sbjct: 373 VGYLRRDEITNDVWDSVALEMPTHTMITQACWWVIPDKVVDDLKFDAVHLAGAAHGAEHT 432
Query: 907 LLHVVPIYVRCNFSDLA 923
+ ++P+Y C+ D+
Sbjct: 433 AIGLLPMYSPCDRWDVG 449
>gi|254416593|ref|ZP_05030344.1| DEAD/DEAH box helicase domain protein [Coleofasciculus
chthonoplastes PCC 7420]
gi|196176559|gb|EDX71572.1| DEAD/DEAH box helicase domain protein [Coleofasciculus
chthonoplastes PCC 7420]
Length = 1053
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 172/618 (27%), Positives = 291/618 (47%), Gaps = 75/618 (12%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATM 278
++ VE A + +P L AL + GI+ L+SHQ S+ A G +++++T
Sbjct: 225 KLTAVEITPASQEKAEPLPQDLPQVLHYALNTIGINSLWSHQYASLQALRQGGDILLSTP 284
Query: 279 TSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL---LAMTKAFDASIDIGV 335
T+SGK+L + LP+LE + ++AL++FP KALA DQLR + + + F I++ +
Sbjct: 285 TASGKTLAFLLPILETCLSNPHATALFIFPLKALAVDQLRQIHDIIDLIPKFQ-RINVVM 343
Query: 336 YDGDTTQKDRM-WLRDNARLLITNPDMLHMSIL----PYHGQFSRILSNLRLIAFSLVTT 390
GD +R+ L + +++ PD+LH + P + L NLR
Sbjct: 344 LTGDVPMAERIKLLEQSPQIICITPDLLHHQLFKVFKPQWQSWQLFLRNLR--------- 394
Query: 391 EVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPS---FVFSTATSA 447
++VIDEAH Y+G+FG H A ++RRL RL G D + +F+TAT
Sbjct: 395 ----------YLVIDEAHTYRGSFGAHFANLMRRL-RLAIDQSGGDSTQLQHIFATATIG 443
Query: 448 NPREHCMELAN-LSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANK 506
NP E + L LI+N G+ A + + P+ AN
Sbjct: 444 NPGELAETFSGRQGNLSLIENSGAATAARTTLCLAPS------------------KYANM 485
Query: 507 TSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAP-HLVDSICVYRA 565
S I +S+L + GL+ I FC SR + +L+ +E LE+ +L + ++
Sbjct: 486 DSCAIV-LSWL-----EQGLKGIVFCNSRISLKSLLNQIQEHLEQRGQGYLKSQVRIFYG 539
Query: 566 GYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSG 625
+ RR+I + G++ + AT+ALE GID+ +D L G+PGS+ L Q+ GR+G
Sbjct: 540 SLKSHHRRQIIQQLSAGEISIILATSALEAGIDIPELDCCLLRGYPGSLMQLRQRQGRAG 599
Query: 626 RRERPSLAVYVAF-EGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
R+ P L +++ + LD ++ P+ L + +E + L+QHL+C A E +
Sbjct: 600 RKS-PGLVIFLPIAQNALDYFYGNNPDLLLRGEVESAVCNPDYQVFLKQHLLCGACESGI 658
Query: 685 SLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESE 744
L +YFG + L N+ L S +++ + P + +R
Sbjct: 659 PLEKFYQYFGQSAADIAIQLMNQNQL--------SLSRHQHLWTKPYPHKDVQMRGTNHF 710
Query: 745 RYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGH-----TYLVKELNLSSKIALCQK- 798
++D Q+ E EE++E A +V+ A+Y HQ Y + L+L ++ A+ +
Sbjct: 711 TVTLVDQQTGEEFEELDEKHAQREVFPEAIYQHQSPWGDRVWYSCQSLDLENQQAILKPL 770
Query: 799 -ADLKYFTKTRDYTDIHV 815
D + T+ T+I +
Sbjct: 771 AEDPQQLTRAEQETEIEL 788
>gi|148656382|ref|YP_001276587.1| DEAD/DEAH box helicase [Roseiflexus sp. RS-1]
gi|148568492|gb|ABQ90637.1| DEAD/DEAH box helicase domain protein [Roseiflexus sp. RS-1]
Length = 897
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 207/759 (27%), Positives = 334/759 (44%), Gaps = 124/759 (16%)
Query: 245 KSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSAL 304
K L G KLYS QA++I +L G ++++ T T+SGKSL Y LPVLEA ++AL
Sbjct: 151 KKVLPKGG--KLYSFQAKAIEVALNGHDIIITTPTASGKSLAYILPVLEATLCSSDATAL 208
Query: 305 YMFPTKALAQDQLRALLAMTKAFDAS--------------------------IDIGVYDG 338
Y+ P AL +DQ AL FD S + I YDG
Sbjct: 209 YISPLVALTEDQFEAL----TIFDESGTDWIRKGERFSIHRVCRTLVIGSRRVTIARYDG 264
Query: 339 DTTQKDRMWLRDN-ARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFL 397
DR +R + ++T PDMLHM++L G F + R + L
Sbjct: 265 SVLPGDREEIRRRRPQYVLTTPDMLHMAML--RGAFDD--RHWRYLLAGL---------- 310
Query: 398 FIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELA 457
R++VIDE H Y+G G A ++RRL RLC ++G++P F+ ++AT +P
Sbjct: 311 --RYIVIDEMHIYRGILGASFANLIRRLQRLC-RLHGTNPQFLCASATMVDPIGTVERFI 367
Query: 458 NLSTLELI-QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSY 516
+ + DG P +++ V+W+ + +DD + A T + + + +
Sbjct: 368 GRRPVGVDGSEDGVPQHKRMVVIWS-------------SSVDDGQVYATSTHAK-NVLLH 413
Query: 517 LFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDS--ICVYRAGYVAEDRRR 574
L +E V+H IAF RS + +T L E +D+ I + +++R
Sbjct: 414 LISERVRH----IAFARSIGEINDIYRFTSAELREQG---IDTPLIKPFMRELRPDEKRA 466
Query: 575 IERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAV 634
I RD G+L V +T AL +GID+G + + +GFPGSIA WQQAGR+GR + +
Sbjct: 467 IIRDLKDGRLHSVISTTALSMGIDIGSLSAAVIIGFPGSIAQFWQQAGRAGRAGE-GVII 525
Query: 635 YVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKY-- 692
+A PLDQ+F+++PE LF E + + N ++ HL+ AA E PLS DE +
Sbjct: 526 LIADRNPLDQFFVQHPEVLFDLNAEPVYCNPDNPYIVRSHLLTAAREFPLS---DEDFHL 582
Query: 693 FGSGLSSGITTLKNRGYLSSDP----SLDSSAKIFEYIGHEKMPSHTISIRAIESERYEV 748
FG I TL G ++SD L SAK + S T ++ + E+ +
Sbjct: 583 FGKAALDQIQTLTAEGLMTSDGMGRYELTESAK---NLADTPFRSLTFAVPVKDQEKRLI 639
Query: 749 IDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLS-----SKIALCQKADLKY 803
+ E++ ++A ++ A Y H Y V +L ++ + + +Y
Sbjct: 640 V---------EVDAARAQRALHRHAHYQHIDRYYRVISCDLDWSRGRGEVVVQELEHPEY 690
Query: 804 FTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDT 863
T DI + +I +D + T G+Y + +F
Sbjct: 691 TTAAHVEIDISI------IDCQIQRDDEHYVVGYGIV-KCHTRVDGYYEV-----PLFSR 738
Query: 864 VELY---------LPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIY 914
E + P Y++QA W+ + V + + + +++ + AL I
Sbjct: 739 NEPFKYRPLGRAAPPPLEYQTQAFWLLLSPKVLDAISPD-EREAAMYSLAGALRLATSIE 797
Query: 915 VRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSK 953
C+ SD+ H +++YD PGG G+++
Sbjct: 798 ELCDLSDVE-GVGMLHFQDVLRPMVMVYDTVPGGVGITE 835
>gi|332669361|ref|YP_004452369.1| hypothetical protein Celf_0844 [Cellulomonas fimi ATCC 484]
gi|332338399|gb|AEE44982.1| Protein of unknown function DUF1998 [Cellulomonas fimi ATCC 484]
Length = 870
Score = 216 bits (551), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 149/474 (31%), Positives = 229/474 (48%), Gaps = 19/474 (4%)
Query: 482 PTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELV 541
P + L + + D + +T++ +E++ L ++V G R +AF RSR+ E V
Sbjct: 351 PGAAGSGPLGTGERVVADAHDGPRRTAT--AEIADLLTDLVVAGARTLAFTRSRRAAESV 408
Query: 542 LSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGH 601
S TR+ L + P L ++ YR GY+ E+RR +ER G+L +A TNALELGID+
Sbjct: 409 ASATRDHLRDVDPDLARAVSAYRGGYLPEERRALERAIRTGELRALATTNALELGIDISG 468
Query: 602 IDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECC 661
+D L G+PG+ SLWQQAGR+GR L VA E PLD + + +PE +F++P+E
Sbjct: 469 LDAVLVAGWPGTRVSLWQQAGRAGRAGADGLVALVAREDPLDTFLVHHPESIFEAPVEAT 528
Query: 662 HIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAK 721
D N VL HL AA E PL + FG S + L RG L PS
Sbjct: 529 VFDPANPYVLAPHLCAAAAELPLR-AEELDAFGPSTSELLAELVERGALRRRPS------ 581
Query: 722 IFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHT 781
Y H + + +R + V++ + +L ++ + A V++GAVY+HQG T
Sbjct: 582 -GWYWTHAEPATRLTDLRGTGGDPVRVVESATGRLLGTVDAASADATVHDGAVYVHQGAT 640
Query: 782 YLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALAC 841
++V EL+L +AL + D+ Y T R T + + ++ LT A
Sbjct: 641 FVVDELHLDDGVALVTRRDVDYGTWARWVTSTEIVSVDE----EVPWGPLTWGFG---AV 693
Query: 842 TVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQS-VKAVVEQNFSFRSGL 900
VTT G+ R + + EL LP + + A W P + V+A L
Sbjct: 694 DVTTQVLGYQRKRIPDLQVLGSSELDLPARTLRTTAAWWTAPAAVVEAAGVSVEDLPGAL 753
Query: 901 HAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
HAA HA + ++P+ C+ DL H + + ++D +PGG G ++
Sbjct: 754 HAAEHASIGLLPLLATCDRWDLGGLSTALH-ADTGEATVFVHDAYPGGAGFAEH 806
Score = 146 bits (368), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 102/298 (34%), Positives = 158/298 (53%), Gaps = 42/298 (14%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
E+++ L G +M HV + AR V P + A ++TG+S+ + HQA +
Sbjct: 6 ELLDALLAGGRRADRMTHVRHLPARAGVRAPWPTWADPDVVRAYRATGVSEPWQHQATAA 65
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSS---------------SALYMFPT 309
A+ +G++ V+AT T SGKSL + LP L A ++S + LY+ PT
Sbjct: 66 DAAWSGRHTVLATSTGSGKSLAFWLPALTAARGAVASGTLDPGRIESVARRATTLYLCPT 125
Query: 310 KALAQDQLRA---LLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSI 366
KALA QL A LL D + + DGDT +R W++++A L++TNPD LH ++
Sbjct: 126 KALAAGQLAALDTLLGAAALRD--VRVATCDGDTALDERRWVQEHADLVLTNPDFLHFAL 183
Query: 367 LPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLC 426
LP H +++R+L +L R+VV+DE HA++G FG H L+LRRL
Sbjct: 184 LPQHRRWARLLGSL-------------------RYVVVDECHAFRGVFGAHVGLVLRRLR 224
Query: 427 RLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQ--NDGSPCAQKLFVLWNP 482
R+ YG+ P F+ ++AT+A+P L + +++ +D SP +K FVLW P
Sbjct: 225 RVARS-YGASPVFLLASATTADPAASAARLVGVDPDDVVAVTDDASPAGRKTFVLWQP 281
>gi|428314474|ref|YP_007125450.1| helicase family protein with metal-binding cysteine cluster
[Microcoleus sp. PCC 7113]
gi|428256086|gb|AFZ22044.1| helicase family protein with metal-binding cysteine cluster
[Microcoleus sp. PCC 7113]
Length = 944
Score = 216 bits (549), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 164/572 (28%), Positives = 274/572 (47%), Gaps = 62/572 (10%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+V V+ + K L +P L D +AL+ +GI ++YSHQ E++MA +GK++ + T T
Sbjct: 119 LVAVDVMPPAKGELHPLPTDLPDALLNALQHSGIQQIYSHQLEALMALRSGKDICLVTAT 178
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAF--DASIDIGVYD 337
SSGK+L +++P+LE+ ++ + L ++P KALA DQ+ L + A + + IG+
Sbjct: 179 SSGKTLSFSIPILESCLNNPNICVLMLYPLKALAVDQMEKLATLNAALPPEKRLKIGLIT 238
Query: 338 GDTTQKDRMWLRDNA--RLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLI 395
GDT +R L + ++L +PD+LH +L + + E +
Sbjct: 239 GDTPISERKQLFSDTPPQILGLSPDLLHY----------------QLYSVRMADGEPFRE 282
Query: 396 FL-FIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDP--SFVFSTATSANPREH 452
FL +R+VV+DE+H Y GAFG + RRL V G +VF++AT NP E
Sbjct: 283 FLRRLRYVVVDESHTYLGAFGAGVTNLFRRLRVAVDRVSGDSSLLQWVFASATIGNPNEM 342
Query: 453 CMEL----ANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTS 508
+ L A L LI G+ A + + P+ N+AN +
Sbjct: 343 ALRLSGREATPERLVLIDKSGAASAGRTLLHLKPS------------------NSANPDA 384
Query: 509 SPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTR-EILEETAPHLVDSICVYRAGY 567
+ I ++ L I FC SR + +LS + E + + +L DS+ V+
Sbjct: 385 AKI------ILSLLDKDLSGICFCNSRSAVKSLLSLIKQEAIRQGCGYLSDSVAVFYGSL 438
Query: 568 VAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRR 627
++ R+ I R G++ + +T+ALE G+D+ +D L G+PGS+ S Q+ GR+GRR
Sbjct: 439 KSDRRQDIIRQLQRGQVRFILSTSALEAGLDLPELDCCLIRGWPGSLMSFRQRIGRAGRR 498
Query: 628 ERPSLAVYVAF-EGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSL 686
P LA+++ + PLD Y+ P+ L E ++ +L +HL+ +E + L
Sbjct: 499 S-PGLAIFLPVAQSPLDNYYSNNPQILLHGEAETVSMNPDYPVLLGKHLMACCVESGVPL 557
Query: 687 IYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERY 746
+YFG L +G L + +++ P IS+R ++
Sbjct: 558 HRLSEYFGERAGVIADALIEQGQL----CVSRHGQLW----GRGYPHKQISLRGSRTQTI 609
Query: 747 EVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQ 778
++ID + E EE+ A +VY GA+Y Q
Sbjct: 610 QLIDSSTGEEFEEMSLDMAQREVYAGAIYTAQ 641
>gi|448726932|ref|ZP_21709313.1| ATP-dependent helicase [Halococcus morrhuae DSM 1307]
gi|445792861|gb|EMA43461.1| ATP-dependent helicase [Halococcus morrhuae DSM 1307]
Length = 846
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 175/669 (26%), Positives = 277/669 (41%), Gaps = 113/669 (16%)
Query: 359 PDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHT 418
PD+LH +LP+ + L I VIDE H Y+G FG
Sbjct: 3 PDLLHYGVLPHDHLWEWFFRQLDTI-------------------VIDEVHEYRGIFGSQI 43
Query: 419 ALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLST--LELIQNDGSPCAQKL 476
AL++RRL R+C Y SDP F+ +AT NP EH + ST +I D S
Sbjct: 44 ALVMRRLTRMCER-YNSDPQFICCSATIGNPAEHAGNVTGQSTDSFSVIDEDTSTTGATH 102
Query: 477 FVLWNPTSCLRSVLNKSQTD---------------------------------------- 496
++ WNP + +S T
Sbjct: 103 WLFWNPPPVKDNSQAESDTQHPAPSELEPEPQPPTMTSDGGEALPAPAPPSTDIDTSFDV 162
Query: 497 -----MDDTRNAANKTS----------SPISEVSYLFAEMVQHGLRCIAFCRSRKLCELV 541
DD +TS S +E LF ++V G + + F R+R+ E
Sbjct: 163 QSDPTADDGGEGETETSVEPESGGERKSNHAEAVRLFCDLVTRGYQTLVFTRTRQGAERC 222
Query: 542 LSYTREILEETAPH-LVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVG 600
++ L + H ++I Y+A + R IE G + GV +T+ALELG+DVG
Sbjct: 223 AEWSAAELHKRGEHQAANAITAYQAALKQDRREEIEDGLHDGSIPGVWSTSALELGVDVG 282
Query: 601 HIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIEC 660
+DV + G+PG+ Q+AGR+GR SL V LDQY M +P+ F+ E
Sbjct: 283 GLDVVILNGYPGTRMQTHQRAGRAGRGRDASLVTLVGGRDQLDQYLMGHPDVFFEGDPEE 342
Query: 661 CHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSA 720
++ N +++ H++ AA E LS DE++FG +T L++ G L + +
Sbjct: 343 AAVNPANDQLMPDHVLSAARESWLSPA-DEQHFGEKFPEFVTQLESEGLLERRNT--NKG 399
Query: 721 KIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGH 780
+ Y G + P H +SIRAI ++ D + L + A V+ A+Y HQG
Sbjct: 400 VRWTYAG-DGSPQHEMSIRAIHDREIQIRDRLNETDLASLSYDDALRDVHPNAIYHHQGE 458
Query: 781 TYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVS------------GGNNAYATKISK 828
Y V +L+L A + +L Y+T+ I V+ G +A +
Sbjct: 459 KYEVVDLDLERDTAFLESTELSYYTQALTDKAISVNEVLNETTLATHPGVTVGFADIEFR 518
Query: 829 DQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVP----Q 884
+Q+TK L CT G + LP ++A++ +P Q
Sbjct: 519 EQVTKY----LRCTQGNDDNGEPI----------PLPEPLPPTELRTRALYFTIPPAIKQ 564
Query: 885 SVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDR 944
+++A + + F +HA HA++ + P+ C+ D+ P + I +YD
Sbjct: 565 NLRAESDVDDGFEGAIHAVEHAMISLFPLEFLCDRRDIG-GLSTPLHPQTAKSTIFIYDG 623
Query: 945 HPGGTGVSK 953
+PGG G+++
Sbjct: 624 YPGGVGLAR 632
>gi|307595773|ref|YP_003902090.1| DEAD/DEAH box helicase [Vulcanisaeta distributa DSM 14429]
gi|307550974|gb|ADN51039.1| DEAD/DEAH box helicase domain protein [Vulcanisaeta distributa DSM
14429]
Length = 760
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 190/739 (25%), Positives = 330/739 (44%), Gaps = 115/739 (15%)
Query: 234 VEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLE 293
+++P L+D L+S GI +LY Q E+ + + G N V+ T GK+ + LP++
Sbjct: 50 LDLPKELIDK----LRSFGIDRLYDFQWEAYQSIINGNNTVIMAGTGVGKTEAFLLPLIT 105
Query: 294 ALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDA-SIDIGVYDGDTTQKDRMWLRDNA 352
+ + A+ M+PTKALA+DQL L M + F A ++ + YDGDT R + +
Sbjct: 106 MIGRE-GIKAMIMYPTKALARDQL---LRMQRYFTAINVSVMPYDGDTPSDIRSKIYSSP 161
Query: 353 -RLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYK 411
+LITNPDM+ + L + G+F +L N + VV+D+ H Y
Sbjct: 162 PDILITNPDMVSEA-LTHVGKFRDLLRNYGV-------------------VVLDDFHVYN 201
Query: 412 GAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSP 471
G FG H +L+R+ R + FV STAT NP + EL + + LI+
Sbjct: 202 GVFGAHVHYVLKRMRRFMRNY-----QFVVSTATVGNPVDFARELLGVDDVRLIRGPEGR 256
Query: 472 CAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAF 531
VL +P S R ++E + L V+ G++C+ F
Sbjct: 257 RGLVRHVLVSPISRGR-----------------------LAEAAELARVCVRRGMKCLVF 293
Query: 532 CRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATN 591
S + EL+ + + D + V+RAG E+R +E F G+ + T
Sbjct: 294 ADSHRFVELIKRFVDK------AGFGDRVRVHRAGLTIEERHEVEDGFREGRYLVLLTTP 347
Query: 592 ALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPE 651
LE+GIDVG DV + P S + Q++GR GRR + + + V + P+ Y+ P
Sbjct: 348 TLEMGIDVGDADVAVMATIPPSYSKYLQRSGRVGRRGQRAYVIQVLGDDPMSTYYSSNPR 407
Query: 652 KLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSL----IYDEKYFGSGLSSGITTLKNR 707
+ + E +++ +N ++ ++H + A E P+ +Y E+ S +S G+ ++
Sbjct: 408 EFYMRKPEDLYVEWRNDEIAKRHCLLMAYERPVRSSSVDLYCEEVLKSLVSEGLVEVRGN 467
Query: 708 GYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDM-QSNEVLEEIEESKAF 766
Y+ S + + + IR I +V+ + + V+ E A
Sbjct: 468 YYVVSSKGREVAKAMH-------------GIRGIG----DVVKIVEGRRVIGHRELPMAL 510
Query: 767 FQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKI 826
++++GA+Y+H G Y V +L+L S+ A ++ Y T T +++S ++
Sbjct: 511 RELHDGAIYLHGGRVYEVYKLDLGSRTAHVRRLPNDYDLYT---TALYIS---EPKIDEV 564
Query: 827 SKDQLTKTTA-QALACTVTTTWFGFYRLWRGSGIIFDTVELYLP-KYSYESQAVWIQVP- 883
++ K+ Q + T+ G+ GSG + + E Y + ++ + I P
Sbjct: 565 LEEGFIKSVPYQYVRLTIKEVVHGYVVKRFGSGEVVERREFNESFTYEFRTKGIIIYAPF 624
Query: 884 ------QSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAP-ECPNPHDSRYFP 936
++V VVE+ ++ HAA H ++ V V +DL P H
Sbjct: 625 ITFSPFENVD-VVERGRAY----HAAEHIMIMVGENVVGAGPTDLGGISYPTGH------ 673
Query: 937 ERILLYDRHPGGTGVSKQV 955
I++YD +PGG+G +K +
Sbjct: 674 --IIIYDSYPGGSGTAKML 690
>gi|352682136|ref|YP_004892660.1| ATP-dependent helicase [Thermoproteus tenax Kra 1]
gi|350274935|emb|CCC81581.1| ATP-dependent helicase [Thermoproteus tenax Kra 1]
Length = 743
Score = 212 bits (540), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 187/730 (25%), Positives = 311/730 (42%), Gaps = 103/730 (14%)
Query: 236 IPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLE-A 294
+ L A K GI LY Q +++ + +GK+ V+ T GK+ + P+LE A
Sbjct: 32 VESVLRPEVAEAFKKRGIKTLYQFQYDAVQSIRSGKDTVIIAGTGLGKTEAFVAPILEEA 91
Query: 295 LSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRD-NAR 353
L + AL ++PTKALA+DQL + T A + VYDGDT+Q++R + +
Sbjct: 92 LDTFRTPVALVVYPTKALARDQLSRI--RTLADQLGVRAMVYDGDTSQRERRLIYEMPPH 149
Query: 354 LLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGA 413
+++TNPDM+ +++ H +F +++S IR++V+D+ H Y G
Sbjct: 150 IIVTNPDMVSQALMHVH-KFRQLVSR-------------------IRYLVLDDFHVYNGV 189
Query: 414 FGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCA 473
G H ++RRL R S P F+ ++AT NP E +L + + +++
Sbjct: 190 LGSHMYYLMRRLSRF------SRPQFIATSATLGNPLEFASQLLD-REVNVVEGPRGRRG 242
Query: 474 QKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCR 533
+ + +L P + S E ++L ++ ++C+ F
Sbjct: 243 ELVQILVRP-----------------------RFRSKWLEAAHLAKLCIEGDMKCLIFAD 279
Query: 534 SRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNAL 593
S + E++ + L D V+RAG AEDR R+E F G + V AT L
Sbjct: 280 SHRYSEMIYRALK------LNGLADRAAVHRAGLSAEDRGRVEDAFREGTIDVVIATPTL 333
Query: 594 ELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKL 653
ELGID+G ID + P + Q+ GR GRR + V + P+ Y+ YP++
Sbjct: 334 ELGIDIGDIDAVVLATVPPTYNRYLQRVGRVGRRGQTGYVVQILGNDPISNYYKNYPQEF 393
Query: 654 FKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSD 713
F E ++ +N V H++ A + P+ E +SS + L GYL+
Sbjct: 394 FSRSPEPLGLERENDDVASLHILAMAADSPIK----EGELSGYMSSVLRRLHEEGYLT-- 447
Query: 714 PSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGA 773
+ K + G + +S+R S + I VL + E A ++++ A
Sbjct: 448 ----KTGKFYRVTGRGRRMLEDLSLRG--SPQVVKIKASDGRVLGQRELPLALYELHPEA 501
Query: 774 VYMHQGHTYLVKELNLSSKIALCQKADLK-YFTKTRDYTDIHVSGGNNAYATKISKDQLT 832
+YMH G TYLVK L++S +IA + + T+ + + H+ + + ++
Sbjct: 502 IYMHGGATYLVKSLDISRRIASVEPIEANDLMTQALEEMEPHME-------EVLEEGKVY 554
Query: 833 KTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQ 892
Q + T +G Y L R T E L +Y+ E + +V +
Sbjct: 555 GVPYQYGRLRIKITVYG-YALKRF------TTEETLAEYTIEPISYEFNTKGAVLFMPSL 607
Query: 893 NFSFR---------SGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYD 943
FS HA H ++ I V +DL Y I++YD
Sbjct: 608 RFSPNDVIDWEERAKAYHATEHVVISAAEISVGAAKTDLG-------GISYPDGVIVIYD 660
Query: 944 RHPGGTGVSK 953
H GG G S+
Sbjct: 661 SHVGGNGTSR 670
>gi|325969801|ref|YP_004245993.1| DEAD/DEAH box helicase [Vulcanisaeta moutnovskia 768-28]
gi|323709004|gb|ADY02491.1| DEAD/DEAH box helicase domain protein [Vulcanisaeta moutnovskia
768-28]
Length = 753
Score = 212 bits (540), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 190/728 (26%), Positives = 320/728 (43%), Gaps = 115/728 (15%)
Query: 248 LKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMF 307
LK GI +LY Q ++ A + G N V+ T GK+ + LP++ +S + + M+
Sbjct: 53 LKGIGIDRLYDFQWQAYQAIINGDNTVIMAGTGVGKTEAFLLPLISMMSRE-DIKVIIMY 111
Query: 308 PTKALAQDQLRALLAMTKAFDASIDIGV--YDGDTTQKDRMWLRDNA-RLLITNPDMLHM 364
PTKALA+DQL L M + A IDI V YDGDT R + + +LITNPDM+
Sbjct: 112 PTKALARDQL---LRMQRYLSA-IDISVMPYDGDTPSNARSRIYSSPPSILITNPDMVSE 167
Query: 365 SILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRR 424
+ L + +F +L ++ VV+D+ H Y G FG H +L+R
Sbjct: 168 A-LSHVSKFRELLHEYKV-------------------VVLDDFHVYNGVFGAHVHYVLKR 207
Query: 425 LCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTS 484
+ R + FV STAT NP + EL ++ LI+ VL +P
Sbjct: 208 MRRFMRNW-----QFVVSTATVGNPLDFARELLDVGNATLIRGPEGRRGLVRHVLISPI- 261
Query: 485 CLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSY 544
T S ++E + L ++ ++C+ F S + EL+ +
Sbjct: 262 ----------------------TRSRLAEAAELARTCIKRDMKCLVFADSHRFVELIKRF 299
Query: 545 TREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDV 604
+ D + V+RAG E+R +E F G+ + +T LE+GIDVG DV
Sbjct: 300 VDK------AGFGDRVRVHRAGLAIEERHEVEDGFKEGRYLVLLSTPTLEMGIDVGDADV 353
Query: 605 TLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHID 664
+ P S + Q++GR GRR + + V V + P+ Y+ P + + E +++
Sbjct: 354 AVMATIPPSYSKYLQRSGRVGRRGQRAYVVQVLGDDPMSTYYSSNPREFYTRRPEDLYVE 413
Query: 665 AQNHKVLEQHLVCAALEHPLSL----IYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSA 720
+N ++ +H + E P+ IY E+ S ++ G+ ++ Y+ S D+
Sbjct: 414 WRNDEIARRHCLLMVYERPVRSGSVDIYCEEILKSLVNDGLVEVRGNYYVVSGRGRDAVK 473
Query: 721 KIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGH 780
I G + IR +E ++ V+ E A ++++GA+Y+H G
Sbjct: 474 AIHGIRGIGDV------IRIVEGKK----------VVGHRELPMALRELHDGAIYLHGGR 517
Query: 781 TYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYAT--KISKDQLTKTTA-Q 837
Y V L+L +++A +K Y D++ + N+ I +D L + Q
Sbjct: 518 VYEVYRLDLRNRVAQVRKLPSDY--------DLYTTALYNSEPKIDDIIEDGLINSVPYQ 569
Query: 838 ALACTVTTTWFGFYRLWRGSGIIFDTVELYLP-KYSYESQAVWIQVP-------QSVKAV 889
+ T+ G+ GSG + + E P Y + ++ V I P ++V +
Sbjct: 570 YVNLTIREIVHGYLVKRFGSGEVVEKREFSEPFTYEFRTKGVVIYAPFITFSPFENVD-I 628
Query: 890 VEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAP-ECPNPHDSRYFPERILLYDRHPGG 948
VE+ ++ HAA H ++ V + +DL P H I++YD +PGG
Sbjct: 629 VERGKAY----HAAEHIIIMVGENVIGAGPTDLGGISYPTGH--------IIIYDSYPGG 676
Query: 949 TGVSKQVT 956
+G +K +T
Sbjct: 677 SGTAKMLT 684
>gi|385305127|gb|EIF49120.1| dead deah box helicase [Dekkera bruxellensis AWRI1499]
Length = 566
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 127/345 (36%), Positives = 190/345 (55%), Gaps = 43/345 (12%)
Query: 204 LEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTG-ISKLYSHQAE 262
L+ R I S G+ ++ R A ++ L K AL+S+ I+K Y+HQA
Sbjct: 248 LKXATFYRDQIPSNGEFF----LTPRSAEYXDLDFELSPKLKEALESSDKITKFYTHQAX 303
Query: 263 SIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLA 322
++ KNV+V+T TSSGKSL Y +PVL+A+ D +A+Y+FPTKALAQDQ R+L
Sbjct: 304 AMNMIHQXKNVIVSTSTSSGKSLIYQVPVLDAIEKDRYVTAMYIFPTKALAQDQKRSLKD 363
Query: 323 MTKAFDASIDIGV--YDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNL 380
+ K ++ V YDGDT ++DR ++R NA ++ TNPDM+H SILP H + R L NL
Sbjct: 364 LLKMMPGMTNLVVETYDGDTAKEDRKYIRQNASIIFTNPDMVHTSILPGHQYWQRFLRNL 423
Query: 381 RLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDP-SF 439
R+V+IDE H YKG FG H ALI+RRL R+C+ ++G+D F
Sbjct: 424 -------------------RYVMIDELHMYKGLFGSHVALIMRRLRRICA-LHGNDKLHF 463
Query: 440 VFSTATSANPREHCMELANLSTLEL--IQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDM 497
+ +AT +P H ++ + ++ ++ DGSP K + WNP +
Sbjct: 464 ISCSATLKDPVTHMHDIFGIPCEDIVHVKKDGSPSGGKHLIAWNPP-------------L 510
Query: 498 DDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVL 542
D R+ + + ISE + + E++++ +R I FC RK ELV+
Sbjct: 511 IDARDPISGRINFISESARIVIELIKNNVRTIVFCVVRKTVELVM 555
>gi|289748163|ref|ZP_06507541.1| LOW QUALITY PROTEIN: helicase [Mycobacterium tuberculosis T92]
gi|289688750|gb|EFD56179.1| LOW QUALITY PROTEIN: helicase [Mycobacterium tuberculosis T92]
Length = 460
Score = 210 bits (534), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 132/389 (33%), Positives = 204/389 (52%), Gaps = 22/389 (5%)
Query: 414 FGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCA 473
FG + A++LRRL RLC+ Y + P+ +F++AT+A+P +L +E+ + DGSP
Sbjct: 12 FGSNVAMVLRRLLRLCAR-YSAHPTVIFASATTASPGATAADLIGQPVVEVTE-DGSPRG 69
Query: 474 QKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCR 533
+ LW P LRS D+ A + S+ +E + + A+++ G + + F R
Sbjct: 70 ARTVALWEP--ALRS-------DVIGEHGAPVRRSAG-AEAARVMADLIVEGAQTLTFVR 119
Query: 534 SRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNAL 593
SR+ EL R L + AP L D++ YRAGY+AEDR + + G+L G+A TNAL
Sbjct: 120 SRRAAELTALGARARLVDIAPELSDTVASYRAGYLAEDRSALHQALAEGQLRGLATTNAL 179
Query: 594 ELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKL 653
ELG+D+ +D + GFPG++AS WQQAGRSGRR + +L V +A + PLD Y + +P L
Sbjct: 180 ELGVDIAGLDAVVLAGFPGTVASFWQQAGRSGRRGQGALVVLIARDDPLDTYLVHHPAAL 239
Query: 654 FKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSD 713
P+E ID N +L L+CAA E PL D + G +L + G L
Sbjct: 240 LDKPVERVVIDPVNPHLLGPQLLCAATELPLD---DAEVRSWGAVEVAESLVDDGLLRR- 295
Query: 714 PSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGA 773
+ + F G + P + +R + +++ + +L + +A + GA
Sbjct: 296 ----RNGRYFPAPGVK--PHAAVDVRGAIGGQIVIVEAGTGRLLGSVGVGQAPAAAHPGA 349
Query: 774 VYMHQGHTYLVKELNLSSKIALCQKADLK 802
VY+HQG TY+V L+ IA D +
Sbjct: 350 VYLHQGETYVVDSLDFQDGIAFVHAEDPR 378
>gi|18313246|ref|NP_559913.1| ATP-dependent helicase [Pyrobaculum aerophilum str. IM2]
gi|18160766|gb|AAL64095.1| ATP-dependent helicase [Pyrobaculum aerophilum str. IM2]
Length = 744
Score = 209 bits (531), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 187/749 (24%), Positives = 309/749 (41%), Gaps = 132/749 (17%)
Query: 232 VLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPV 291
V +I A+ KS GIS LY +Q ++I + A ++ V+ T GK+ + +PV
Sbjct: 28 VCCDISSAVRGEVAEVFKSLGISNLYRYQYDAIQSIRAKRDTVIVAGTGMGKTEAFLIPV 87
Query: 292 LEALSHDLSSS-ALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRD 350
LE+ L AL ++PTKALA+DQL + + VYDGDT Q++R L D
Sbjct: 88 LESSLESLGGPVALVLYPTKALARDQLARFRKYGDRL--GVRVMVYDGDTPQRERRILYD 145
Query: 351 -NARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHA 409
++I+NPDM+ +++ + +F +L +R+VV+D+ H
Sbjct: 146 MPPHVIISNPDMVSQALM-HVAKFRELLKR-------------------VRYVVLDDFHV 185
Query: 410 YKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDG 469
Y G FG H +L+RL R P F+ ++AT NP E L +
Sbjct: 186 YAGVFGSHMYYLLKRLRRFVR------PVFIATSATVGNPAEFAQSLFD----------- 228
Query: 470 SPCAQKLFVLWNP---TSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGL 526
+ ++ V+W P L VL A + S +E + L + ++H +
Sbjct: 229 ---SDRVNVVWGPLGRRGRLVQVL------------ARPRFRSKWAEAARLASLCLEHDM 273
Query: 527 RCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCG 586
+C+ F S + E++ R D + V+RAG E+R+ +E F G +
Sbjct: 274 KCLVFTDSHRYSEIIYRALR------MGGAGDRVAVHRAGLDPEERKNVEEAFKRGDIDV 327
Query: 587 VAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYF 646
V +T LELGID+G +D + P S Q+ GR GRR + + + P+ QY+
Sbjct: 328 VISTPTLELGIDIGDVDAAVLASIPPSYNRYLQRIGRVGRRGQTGYVIQILGNDPISQYY 387
Query: 647 MKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL---SLIYDEKYFGSGLSSGITT 703
YP + F E + +N V HL+ A+ + PL L EK +
Sbjct: 388 RNYPHEFFSRAPEPLGFEKENEDVASLHLLAASADMPLRRGELTPFEKTI-------VAK 440
Query: 704 LKNRGYLSSDPSL----DSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEE 759
L RGYL S ++ + P H + I+ ++ + E
Sbjct: 441 LAERGYLKEVGSFYRISPQGRELLSMLSLRGSP-HVVKIKTVD-----------GRTIGE 488
Query: 760 IEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTR------DYTDI 813
E A ++++ A+YMH G TY+ K L+L ++A+ + D + + ++
Sbjct: 489 REFPLALYELHPEAIYMHGGRTYVSKSLDLQKRVAVVEPVDAEDLMTQALEDMEPEIVEL 548
Query: 814 HVSGGNNAYATKISKDQLTKTT-AQALACTVTTTWFGFYRL------WRGSGIIFDTVEL 866
+ G + K ++ T AL T G Y + + G +F
Sbjct: 549 YEEGLVEGVPYQFGKLKIRITVYGYALKRFTTEETLGEYTIDPLVYEFETKGAVF----- 603
Query: 867 YLP--KYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAP 924
Y+P ++S W +A G HA H L+ I + + +DL
Sbjct: 604 YMPLVRFSTNDAVDW-----EARA---------KGYHATEHVLISATEIAIGASKTDLG- 648
Query: 925 ECPNPHDSRYFPERILLYDRHPGGTGVSK 953
Y +++YD H GG G ++
Sbjct: 649 ------GISYPDGVVVIYDSHIGGNGTTR 671
>gi|379003653|ref|YP_005259325.1| distinct helicase family with a unique C-terminal domain including
a metal-binding cysteine cluster [Pyrobaculum oguniense
TE7]
gi|375159106|gb|AFA38718.1| Distinct helicase family with a unique C-terminal domain including
a metal-binding cysteine cluster [Pyrobaculum oguniense
TE7]
Length = 744
Score = 208 bits (529), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 190/732 (25%), Positives = 320/732 (43%), Gaps = 106/732 (14%)
Query: 236 IPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL 295
+ +A AL++ GIS+LY +Q +++ + AG++ V+ T GK+ + +P+LEA
Sbjct: 32 VSEAARPEVAEALRALGISQLYRYQYDAVKSIEAGRDTVIVAGTGMGKTEAFLIPILEAS 91
Query: 296 SHDLSSS-ALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNA-R 353
L AL ++PTKALA+DQL L + + VYDGDT Q++R + D+
Sbjct: 92 LESLGGPVALLLYPTKALARDQLHRLRRYGDRL--GVRVMVYDGDTPQRERRLMYDSPPH 149
Query: 354 LLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGA 413
++++NPDM+ +++ + +F +++ LR +VV+D+ H Y G
Sbjct: 150 IIVSNPDMVSQALM-HVARFRQLVGRLR-------------------YVVLDDFHVYAGV 189
Query: 414 FGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCA 473
FG H +LRRL R P FV ++AT NP E L ++D
Sbjct: 190 FGSHMYYLLRRLRRFVR------PVFVGTSATVGNPAEFAQAL--------FESD----- 230
Query: 474 QKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCR 533
++ V+W P V++ + S +E + L + ++HG++CI F
Sbjct: 231 -RVNVVWGPLRRRGKVIHVL---------VRPRFRSKWAEAAKLASLCIEHGMKCIVFTD 280
Query: 534 SRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNAL 593
S K E++ + + L D + V+RAG AE+R+R+E G++ V AT L
Sbjct: 281 SHKYSEIIYRALKMM------GLGDRVAVHRAGLEAEERKRVEEALKRGEIDVVIATPTL 334
Query: 594 ELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKL 653
ELGID+G +D + P S + Q+ GR GRR + V + P+ QY+ YP +
Sbjct: 335 ELGIDIGDVDGAILASIPPSYSRYLQRVGRVGRRGQTGYVVQILGNDPISQYYWNYPHEF 394
Query: 654 FKSPIECCHIDAQNHKVLEQHLVCAALEHPL---SLIYDEKYFGSGLSSGITTLKNRGYL 710
F E + +N + HL+ AA + PL L EK L + + + +L
Sbjct: 395 FARAPEPLGFEKENEDIAALHLLAAAADKPLRTGELTPFEKALAEKLLARGSLTRVGSFL 454
Query: 711 SSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVY 770
P + G H + IR + + E E A ++++
Sbjct: 455 RITPQGREELSMLSLRGS----PHVVKIRTAD-----------GRTIGERELPLALYELH 499
Query: 771 EGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTR------DYTDIHVSGGNNAYAT 824
A+YMH G TY+ K L+L ++A+ + AD + + +++ G
Sbjct: 500 PEAIYMHGGRTYVSKTLDLEKRVAVVEPADAEDLVTSALEDMEPQLVEVYEEGSAEGVPY 559
Query: 825 KISKDQLTKTT-AQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVP 883
+ + ++ T AL T G Y + D + Y +E++ P
Sbjct: 560 QYGRLKMRITVYGYALKRFTTDETLGEYNI--------DPL-----SYEFETKGAVFYFP 606
Query: 884 QSVKAVVEQ-NFSFRS-GLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILL 941
A + ++ R+ G HAA H L+ I V + +DL Y I++
Sbjct: 607 LLRFATNDAVDWEARAKGYHAAEHVLISAAEIAVGASKTDLG-------GVSYPDGVIVI 659
Query: 942 YDRHPGGTGVSK 953
YD H GG G ++
Sbjct: 660 YDSHVGGNGTTR 671
>gi|145591727|ref|YP_001153729.1| DEAD/DEAH box helicase [Pyrobaculum arsenaticum DSM 13514]
gi|145283495|gb|ABP51077.1| DEAD/DEAH box helicase domain protein [Pyrobaculum arsenaticum DSM
13514]
Length = 744
Score = 207 bits (526), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 195/753 (25%), Positives = 330/753 (43%), Gaps = 113/753 (15%)
Query: 219 QMVHVE-DISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVAT 277
++V+V+ D + V ++ +A AL++ GIS+LY +Q +++ + AG++ V+
Sbjct: 14 EVVYVKSDEAEAPEVCCDVSEAARPEVAEALRALGISQLYRYQYDAVKSIGAGRDTVIVA 73
Query: 278 MTSSGKSLCYNLPVLEALSHDLSSS-ALYMFPTKALAQDQLRALLAMTKAFDASIDIGVY 336
T GK+ + +P+LEA L AL ++PTKALA+DQL L + + VY
Sbjct: 74 GTGMGKTEAFLIPILEASLESLGGPVALLLYPTKALARDQLHRLRRYGDRL--GVRVMVY 131
Query: 337 DGDTTQKDRMWLRDNA-RLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLI 395
DGDT Q++R + D+ ++++NPDM+ +++ + +F +++ LR
Sbjct: 132 DGDTPQRERRLMYDSPPHIIVSNPDMVSQALM-HVARFRQLVGRLR-------------- 176
Query: 396 FLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCME 455
+VV+D+ H Y G FG H +LRRL R P FV ++AT NP E
Sbjct: 177 -----YVVLDDFHVYAGVFGSHMYYLLRRLRRFVR------PVFVATSATVGNPAEFAQA 225
Query: 456 LANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVS 515
L ++D ++ V+W P V++ + S +E +
Sbjct: 226 L--------FESD------RVNVVWGPLRRRGKVIHAL---------VRPRFRSKWAEAA 262
Query: 516 YLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRI 575
L + ++H ++CI F S K E++ + + L D + V+RAG AE+R+R+
Sbjct: 263 KLASLCIEHDMKCIVFTDSHKYSEIIYRALKMM------GLGDRVAVHRAGLEAEERKRV 316
Query: 576 ERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVY 635
E G++ V AT LELGID+G +D + P S + Q+ GR GRR + V
Sbjct: 317 EEALKRGEIDVVIATPTLELGIDIGDVDGAILASIPPSYSRYLQRVGRVGRRGQTGYVVQ 376
Query: 636 VAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL---SLIYDEKY 692
+ P+ QY+ YP + F E + +N + HL+ AA + PL L EK
Sbjct: 377 ILGNDPISQYYWNYPHEFFARAPEPLGFEKENEDIAALHLLAAAADKPLRTGELTPFEKA 436
Query: 693 FGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQ 752
L + + + +L P + G H + IR +
Sbjct: 437 LAEKLLARGSLTRVGSFLRITPQGREELSMLSLRGS----PHVVKIRTAD---------- 482
Query: 753 SNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTR---- 808
+ E E A ++++ A+YMH G TY+ K L+L ++A+ + AD + +
Sbjct: 483 -GRTIGERELPLALYELHPEAIYMHGGRTYVSKTLDLEKRVAVVEPADAEDLVTSALEDM 541
Query: 809 --DYTDIHVSGGNNAYATKISKDQLTKTT-AQALACTVTTTWFGFYRLWRGSGIIFDTVE 865
+++ G + + ++ T AL T G Y + D +
Sbjct: 542 EPQLVEVYEEGSAEGVPYQYGRLKMRITVYGYALKRFTTDETLGEYNI--------DPL- 592
Query: 866 LYLPKYSYESQAVWIQVP----QSVKAVVEQNFSFRS-GLHAASHALLHVVPIYVRCNFS 920
Y +E++ P S AV ++ R+ G HAA H L+ I V + +
Sbjct: 593 ----SYEFETKGAVFYFPLLRFASNDAV---DWEARAKGYHAAEHVLISAAEIAVGASKT 645
Query: 921 DLAPECPNPHDSRYFPERILLYDRHPGGTGVSK 953
DL Y I++YD H GG G ++
Sbjct: 646 DLG-------GVSYPDGVIVIYDSHVGGNGTTR 671
>gi|126460255|ref|YP_001056533.1| DEAD/DEAH box helicase [Pyrobaculum calidifontis JCM 11548]
gi|126249976|gb|ABO09067.1| DEAD/DEAH box helicase domain protein [Pyrobaculum calidifontis JCM
11548]
Length = 751
Score = 206 bits (525), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 202/760 (26%), Positives = 338/760 (44%), Gaps = 102/760 (13%)
Query: 207 VEHLRKGIGSQG-QMVHVE-DISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
V LRK + G ++V+V+ D + R ++ + L A KS GIS LY HQ +++
Sbjct: 8 VSFLRKVLEDPGREVVYVKTDEAERVEPCCDVGEVLRAEVAQAFKSLGISSLYRHQYDAV 67
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSS-ALYMFPTKALAQDQLRALLAM 323
++ AG++ V+ T GK+ + P+LEA L AL ++PTKALA+DQL L
Sbjct: 68 VSIRAGRDTVIVAGTGMGKTEAFLAPILEASLESLGGPVALVLYPTKALARDQLSRLRRF 127
Query: 324 TKAFDASIDIGVYDGDTTQKDRMWLRDNA-RLLITNPDMLHMSILPYHGQFSRILSNLRL 382
+ + VYDGDT Q++R L D+ ++++NPDM+ +++ + +F ++
Sbjct: 128 ADRL--GVRVMVYDGDTPQRERRILYDSPPHIIVSNPDMVSQALM-HVAKFRELVKR--- 181
Query: 383 IAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFS 442
+R++V+D+ H Y G FG H +LRRL R S P ++ +
Sbjct: 182 ----------------VRYLVLDDFHVYGGVFGSHMYYLLRRLRRF------SRPVYIAT 219
Query: 443 TATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRN 502
+AT NP E L + ++ + + VL P
Sbjct: 220 SATVGNPAEFTQALFESDRVNVVVGPLGRRGRLVQVLARP-------------------- 259
Query: 503 AANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICV 562
+ S +E + L A V+ G++C+ F S + E++ + + + V
Sbjct: 260 ---RFRSKWAEAARLAAICVEEGVKCLVFTDSHRYSEVIYRALK------MGGYGERVAV 310
Query: 563 YRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAG 622
+RAG AE+RRR+E F G++ V +T LELG+D+G +DV + P S Q+ G
Sbjct: 311 HRAGLDAEERRRVEDAFKRGEIDVVISTPTLELGVDIGDVDVAVLASIPPSYNRYLQRVG 370
Query: 623 RSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEH 682
R GRR + V + P+ QY+ YP + F E + +N V HL+ AA +
Sbjct: 371 RVGRRGQTGYVVQILGNDPISQYYRNYPHEFFARAPEPLGFEKENEDVAALHLLAAASDM 430
Query: 683 PLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYI-----GHEKMPSHTIS 737
PL L + F L+ +L +GYL AK+ Y+ G E + S +S
Sbjct: 431 PLRL-SELSNFEKELAE---SLLAKGYL---------AKVGNYLRITPAGREALSS--LS 475
Query: 738 IRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQ 797
+R S I L E E A ++++ A+YMH G TY+ K L+L+ ++A+ +
Sbjct: 476 LRG--SPHVVKIKTVDGRTLGERELPLALYELHPEAIYMHGGRTYVSKSLDLTKRVAIVE 533
Query: 798 KADLK-YFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRG 856
D + T+ + D + + + + Q + L +T + R
Sbjct: 534 PVDAEDLVTQALEDMDPELVEVVEEGSVEGVRYQYGR-----LKIRITVHGYALKRFTTE 588
Query: 857 SGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRS---GLHAASHALLHVVPI 913
+ +E Y +E++ V + +P V+ E+ + + G HA H L+ I
Sbjct: 589 ETLGEYPIEPL--SYEFETKGVVLYMPL-VRFTSEEALDWEARAKGYHATEHVLISAAEI 645
Query: 914 YVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSK 953
+ +DL Y I++YD H GG G S+
Sbjct: 646 AIGSAKTDLG-------GISYPDGVIVIYDSHVGGNGTSR 678
>gi|365826887|ref|ZP_09368773.1| hypothetical protein HMPREF0975_00556, partial [Actinomyces sp.
oral taxon 849 str. F0330]
gi|365265611|gb|EHM95362.1| hypothetical protein HMPREF0975_00556, partial [Actinomyces sp.
oral taxon 849 str. F0330]
Length = 526
Score = 206 bits (523), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 139/470 (29%), Positives = 227/470 (48%), Gaps = 18/470 (3%)
Query: 487 RSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTR 546
R+ L +S+ R +A + E + L +++ G R + F RSR+ E+V R
Sbjct: 13 RTGLRRSEATDPSARRSA------VVEAAELLVDLLSVGARALVFVRSRRSAEIVAERAR 66
Query: 547 EILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTL 606
L + P L+ ++ YR GY+ E+RR +E D G+L +A T+ALELGIDV +D L
Sbjct: 67 HTLGLSLPELIGTVSAYRGGYLPEERRALEADLRSGRLRALATTSALELGIDVTGLDAVL 126
Query: 607 HLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQ 666
G+PG+ SL QQAGR+GR LAV +A + PLD Y + +PE +F +P E D
Sbjct: 127 IAGWPGTRVSLGQQAGRAGRAGSRGLAVLIASDNPLDAYLVHHPEAVFAAP-EATVFDPT 185
Query: 667 NHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYI 726
N VL HL AA E PL D FG + + L+ RG L P+ F +
Sbjct: 186 NPYVLAPHLCAAASEAPLK-ASDLALFGLPDDALLRELEGRGALRRRPT-----GWFWNV 239
Query: 727 GHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKE 786
P +S+R E V++ + ++ + + A V+EGAVY+HQG Y+V+E
Sbjct: 240 NLPGRPQDLVSLRGDERPEVPVVEAGTGAIIGTVNGATADSTVHEGAVYVHQGRVYVVEE 299
Query: 787 LNLSSKIALCQ-KADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTT 845
L+ +AL + +A + Y T+ + ++ + + + + T + VT+
Sbjct: 300 --LADDVALVRPRAAVGYRTRAQVHSSVRIIAEREQQVWRAAGRGEPTITWSFGSVEVTS 357
Query: 846 TWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVP-QSVKAVVEQNFSFRSGLHAAS 904
GF + G + L ++ + AVW +P ++ +A + + LHAA
Sbjct: 358 QVTGFQKTALPGGEVVSQHALETDEHVLPTAAVWWTIPLRACEAGGLELATLPGALHAAE 417
Query: 905 HALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
HA + ++P+ C+ D+ H P + ++D H GG G +++
Sbjct: 418 HASIGMLPLLATCDRWDIGGLSTALHPQTGAPT-VFVHDGHAGGAGFAER 466
>gi|119872530|ref|YP_930537.1| DEAD/DEAH box helicase [Pyrobaculum islandicum DSM 4184]
gi|119673938|gb|ABL88194.1| DEAD/DEAH box helicase domain protein [Pyrobaculum islandicum DSM
4184]
Length = 744
Score = 205 bits (522), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 183/729 (25%), Positives = 309/729 (42%), Gaps = 108/729 (14%)
Query: 240 LLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDL 299
L+ ++ GIS LY +Q ++I + + ++ V+ T GK+ + P+ E L
Sbjct: 36 LMPVVAKVFEAVGISHLYRYQYDAIQSIRSNRDTVIVAGTGMGKTEAFLAPLFETSLESL 95
Query: 300 SSS-ALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRD-NARLLIT 357
AL ++PTKALA+DQ + + VYDGDT Q++R L + ++I+
Sbjct: 96 GGPVALVLYPTKALARDQFARFRKFADKL--GVRVMVYDGDTPQRERRILYEMPPHIIIS 153
Query: 358 NPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCH 417
NPDM+ ++++ + +F ++ L+ +VV+D+ H Y G FG H
Sbjct: 154 NPDMVSLALM-HVAKFRELVKRLK-------------------YVVLDDFHVYSGVFGSH 193
Query: 418 TALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLF 477
+LRRL R + P F+ ++AT NP E L + + K+
Sbjct: 194 MYYLLRRLKRF------TRPVFIATSATVGNPAEFAQALFD--------------SNKIN 233
Query: 478 VLWNP---TSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRS 534
V+W P L VL + K S +E + L + +++GL+CI F S
Sbjct: 234 VVWGPLGRRGRLIQVLVRP------------KFRSKWAEAARLSSLCIENGLKCIVFTDS 281
Query: 535 RKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALE 594
+ E++ + D + V+RAG E+R+ +E F G + V +T LE
Sbjct: 282 HRYSEIIYRALK------MGGYGDKVAVHRAGLEPEERKNVEEAFKRGDVNVVISTPTLE 335
Query: 595 LGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLF 654
LGID+G ID + P S Q+ GR GRR + V + P+ QY+ YP + F
Sbjct: 336 LGIDIGDIDAAILASIPPSYNRYLQRIGRVGRRGQTGYVVQILGNDPISQYYRNYPHEFF 395
Query: 655 KSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDP 714
+E + +N + HL+ AA + PL + + F L+ L RG L
Sbjct: 396 SRSLEPLGFEKENEDIASLHLLAAATDMPLKM-GELTPFEQELAE---NLLKRGRLKRVG 451
Query: 715 SLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAV 774
+ K G E + S +S+R S I V+ E E A ++++ A+
Sbjct: 452 NFLRITK----EGREMLSS--LSLRG--SPHVVKIKTVDGSVIGERELPLALYELHPEAI 503
Query: 775 YMHQGHTYLVKELNLSSKIALCQKADLKYFTKTR------DYTDIHVSGGNNAYATKISK 828
YMH G TY+ + L+L+ +IA+ + D + + +++ G + +
Sbjct: 504 YMHGGRTYVSELLDLTRRIAVVKPVDAEDLVTQALEDMEPEIIEVYEEGITEGVPYQFGR 563
Query: 829 DQLTKTT-AQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVK 887
++ T AL T G Y + S Y +E++ V +P ++
Sbjct: 564 LRIKITVYGYALKRFTTEETLGEYNIEPLS-------------YEFETKGVVFYMPY-IR 609
Query: 888 AVVEQNFSFRS---GLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDR 944
+ + G HA H L+ I + + +DL Y I++YD
Sbjct: 610 FSTNDTIDWEARTKGYHATEHVLISATEIAIGASKTDLG-------GISYPDGVIVIYDS 662
Query: 945 HPGGTGVSK 953
H GG G ++
Sbjct: 663 HIGGNGTAR 671
>gi|327310452|ref|YP_004337349.1| ATP-dependent helicase [Thermoproteus uzoniensis 768-20]
gi|326946931|gb|AEA12037.1| ATP-dependent helicase [Thermoproteus uzoniensis 768-20]
Length = 744
Score = 205 bits (521), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 193/734 (26%), Positives = 310/734 (42%), Gaps = 117/734 (15%)
Query: 239 ALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLE-ALSH 297
AL AL+ G+ +LY Q ++I + +GK+ V+ T GK+ + P+LE +L
Sbjct: 35 ALRAEVADALRKAGVERLYPFQYDAIQSIRSGKDTVIIAGTGLGKTEAFLAPILEESLDT 94
Query: 298 DLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWL-RDNARLLI 356
+ A+ M+PTKALA+DQL + A+ + VYDGDT ++R L + +L+
Sbjct: 95 FKTPVAVIMYPTKALARDQLGRIRALADRL--GVRAMVYDGDTPPRERRILYQTPPHILV 152
Query: 357 TNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGC 416
TNPDM+ +++ Y +F ++LS R+VV+D+ H Y G G
Sbjct: 153 TNPDMVSQALM-YVPKFRQLLSR-------------------ARYVVLDDFHVYSGVLGS 192
Query: 417 HTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKL 476
H +LRR+ R P FV ++AT NP E L N + ++Q + +
Sbjct: 193 HMFYLLRRMERFVK------PQFVATSATLGNPAEFAELLLN-RKVNVVQGPRGRRGELV 245
Query: 477 FVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRK 536
VL P + S +E + L + L+C+ F S +
Sbjct: 246 QVLVRP-----------------------RFRSKWAEAAGLAKICIDEDLKCLVFTDSHR 282
Query: 537 LCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELG 596
E++ R LE S V+RAG AE+R +E F G++ V AT LELG
Sbjct: 283 YSEMIYRALR--LEGYG----GSAAVHRAGLGAEERSNVEEAFKKGEINVVIATPTLELG 336
Query: 597 IDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKS 656
+D+G +D + P + Q+ GR GRR + V + P+ Y+ YP++ F
Sbjct: 337 VDIGDVDAAVLASVPPTFNRYLQRVGRVGRRGQTGYVVQILGNDPISSYYRNYPDEFFAR 396
Query: 657 PIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSL 716
E ++ +N V H++ AL+ P+ E + L + GYL
Sbjct: 397 SPEPLGLERENEDVASLHMLAMALDRPIR----EDELAPYQLPLLRELASAGYLERRGRF 452
Query: 717 DSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYM 776
K G EK+ +S+R S I ++L E A ++++ A+Y
Sbjct: 453 YFITK----AGREKLAD--LSLRG--SPHVVKIKTADGKLLGHRELPLALYELHPEAIYA 504
Query: 777 HQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHV-------SGGNNAYATKISKD 829
H G TY+VK L+L+ + A+ + AD + T T+ D+ G + K
Sbjct: 505 HGGATYIVKSLDLARRAAVVEPADAEDLT-TQALEDMEPYMEEVLEEGKVEGVPYQYGKL 563
Query: 830 QLTKTT-AQALACTVTTTWFGFYRL------WRGSGIIFDTVELYLP--KYSYESQAVWI 880
++ T AL T G Y + +R G +F Y+P +YS W
Sbjct: 564 RIRITVYGYALKRFTTDETLGEYPIEPVSYEFRTKGAVF-----YMPLLRYSPNDAVDWE 618
Query: 881 QVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPER-I 939
+ + G HA H L+ I V + +DL +P+ +
Sbjct: 619 ERAK--------------GYHATEHVLISAAEIAVGASKTDLG--------GISYPDGVV 656
Query: 940 LLYDRHPGGTGVSK 953
++YD H GG G S+
Sbjct: 657 VIYDSHIGGNGTSR 670
>gi|113477156|ref|YP_723217.1| DEAD/DEAH box helicase [Trichodesmium erythraeum IMS101]
gi|110168204|gb|ABG52744.1| DEAD/DEAH box helicase-like [Trichodesmium erythraeum IMS101]
Length = 905
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 166/604 (27%), Positives = 282/604 (46%), Gaps = 64/604 (10%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+V +++ L +P+ L K L I +LY HQ ES+ A G ++ + T T
Sbjct: 119 LVAIDNTPPTPGKLYPLPEDLPITLKKTLIIHNIRQLYEHQIESLTALRKGLDLCIFTPT 178
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDA-SIDIGVYDG 338
+SGK+LCYNL +LE+ + ALY+FP KALA DQ + L M F S+ IG+ G
Sbjct: 179 ASGKTLCYNLAILESCLQQPETRALYIFPLKALALDQTQKLERMVSYFPKNSVKIGLITG 238
Query: 339 DTTQKDR--MWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIF 396
D + ++R +++ + +L +PD+LH Q +I S R + F
Sbjct: 239 DISSENRKKLFIPNPPNILGVSPDLLHY-------QLYKITSKDR--------EKWRQFF 283
Query: 397 LFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDP--SFVFSTATSANPREHCM 454
+R+VVIDE+H Y GAFG H A ++RRL + V GS F+FS+AT NP E M
Sbjct: 284 QQLRYVVIDESHTYIGAFGAHFANLIRRLKMVVDIVGGSSEKLQFIFSSATIGNPAEMAM 343
Query: 455 ELANLS----TLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSP 510
++ S L LI G+ + K + P+ AN S
Sbjct: 344 RFSDRSHQPERLHLISKSGADSSGKTILFLEPSQI------------------ANPDSCK 385
Query: 511 ISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETA-PHLVDSICVYRAGYVA 569
I +S+L ++ L + F SR + +L + ++ +L D I ++
Sbjct: 386 II-LSWL-----RYNLTGVVFSNSRSAVKKLLGIIKRTADKNGESYLADKIAIFYGSLEF 439
Query: 570 EDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRER 629
R+ I + G + + +T+ALE GID+ +D L G+PGS+ S Q+ GR GR+
Sbjct: 440 HRRQDIIQKLQTGVVKVILSTSALEAGIDLPELDCCLVRGYPGSLMSWKQRIGRVGRK-N 498
Query: 630 PSLAVYVAF-EGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIY 688
P L +++ + LD ++ P+ L E + +L +HL C+ +E + L
Sbjct: 499 PGLIMFLPVAQNTLDNFYGNKPDLLLNGEAESATFNPNYPTILGKHLECSCVESGIPLSE 558
Query: 689 DEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEV 748
+K FG + +L + + +++S +++ Y P +++R ++
Sbjct: 559 IKKRFGEVAKVIVDSLLKQEKI----YINNSNQLWGY----GYPHRNVNLRGHAQNDVDL 610
Query: 749 IDMQSNEVLEEIEESKAFFQVYEGAVYMHQGH-----TYLVKELNLSSKIALCQKADLKY 803
I++ + + E++ S A +V+ GA+Y Q + +Y + L+L K A+ + Y
Sbjct: 611 INVNTGKSFEKMPMSLAHKEVFPGAIYCAQNYDGDLISYHSENLDLDQKQAILKPLAKNY 670
Query: 804 FTKT 807
+T
Sbjct: 671 NLET 674
>gi|347733201|ref|ZP_08866266.1| putative HELICASE domain protein [Desulfovibrio sp. A2]
gi|347518228|gb|EGY25408.1| putative HELICASE domain protein [Desulfovibrio sp. A2]
Length = 1180
Score = 202 bits (515), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 238/501 (47%), Gaps = 52/501 (10%)
Query: 457 ANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSY 516
A S + +I G+P + FV NP DD SP +
Sbjct: 352 AAASPISVITESGAPQGLRHFVFVNP---------------DD---------SPSTAAIQ 387
Query: 517 LFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIE 576
L + GLR I +C+SR++ EL+ + E+ P+ D I YRAG++ E+RR IE
Sbjct: 388 LLRAALARGLRTIVYCQSRRMTELISMWA---AEKAGPYR-DRISAYRAGFLPEERRDIE 443
Query: 577 RDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYV 636
GG L V +T+ALELGID+G +D+ + +G+PG++ S Q+ GR GR ++ S + +
Sbjct: 444 ARMSGGDLLAVISTSALELGIDIGGLDLCILVGYPGTVMSTLQRGGRVGRAQQESAVILI 503
Query: 637 AFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSG 696
A E LDQYF+++P + F P E ++ N + ++H+ CAA E PL DE +
Sbjct: 504 AGEDALDQYFVRHPNEFFDRPAEHAVVNPDNPVIAKRHIECAAAELPLPA--DEPWL--- 558
Query: 697 LSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEV 756
+ L S+ + SA + K P + +R S I+ +
Sbjct: 559 --AAPGAATALAELESEGLVLRSADGGTLLAARKRPHRHVDLRG--SGNTFTIEDGDGTI 614
Query: 757 LEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTR--DYTDI- 813
+ ++ +A+ + + GAVY+H+G ++++ L+ ++ + ++A + +FT+ R TDI
Sbjct: 615 IGSVDGHRAYRETHPGAVYLHRGRSWVITRLDPGAQKVVAEQARVSWFTRVRANKTTDIL 674
Query: 814 HVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSY 873
+ A T++ +L VT T G+ + + V L P + +
Sbjct: 675 EIYDQREACGTRVFLGKL----------RVTETITGYEKRSVSGQRLLSVVPLDAPPFIF 724
Query: 874 ESQAVWIQVPQSVKAVVEQN-FSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDS 932
E++ +W ++P + + E F +HA HA + ++P+ V + +DL P +
Sbjct: 725 ETEGLWFEIPDAARIATENELLHFMGAIHALEHAAIGILPLLVMTDRNDLG-GISTPMHA 783
Query: 933 RYFPERILLYDRHPGGTGVSK 953
+ + +YD PGG G+++
Sbjct: 784 QVGRPAVFIYDGLPGGAGLTR 804
Score = 174 bits (440), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 100/255 (39%), Positives = 141/255 (55%), Gaps = 24/255 (9%)
Query: 219 QMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATM 278
Q+ H + AR+A + L I +LY+HQA + AG++VVVAT
Sbjct: 16 QVTHHRALPAREAAHAPNRRPWPKAIRDILARNSIDELYTHQARATDLIRAGRHVVVATP 75
Query: 279 TSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFD--ASIDIGVY 336
T+SGK+ YNLPVLE D + ALY+FP KALAQDQL +T A+ A +Y
Sbjct: 76 TASGKTYVYNLPVLERFLSDPDARALYLFPLKALAQDQLSTFTGLTDAWPEAARPRAAIY 135
Query: 337 DGDTTQKDRMWLRDN-ARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLI 395
DGDTT R +R N +L+TNP+MLH++ILP+H Q++ +L++L
Sbjct: 136 DGDTTDHFRRKIRQNPPTVLLTNPEMLHLAILPHHQQWTSLLASL--------------- 180
Query: 396 FLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCME 455
F+V+DE H Y+G G H A + RRL R+C+ YG+ P+FVF +AT NP E
Sbjct: 181 ----AFIVVDEVHTYRGVLGAHMAQVFRRLLRVCAR-YGAHPTFVFCSATVGNPGELAAN 235
Query: 456 LANLST-LELIQNDG 469
L L ++ ++ DG
Sbjct: 236 LTGLGVPVDAVKIDG 250
>gi|17158688|ref|NP_478199.1| ATP-dependent RNA helicase [Nostoc sp. PCC 7120]
gi|17134637|dbj|BAB77195.1| alr7552 [Nostoc sp. PCC 7120]
Length = 906
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 183/624 (29%), Positives = 293/624 (46%), Gaps = 74/624 (11%)
Query: 197 DKSQLLPLE--------MVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSAL 248
+ LLPL + + + + G++ E I A++A L IPD + K AL
Sbjct: 50 NSGNLLPLNQAPTGKSILYQEIAAILDGSGKLQSCEVIPAQEAKLYPIPDDIHPLVKLAL 109
Query: 249 KSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVL-EALSHDLSSSALYMF 307
+GI++LYSHQ E+ A GK++++ T TSSGKS+ + +P++ E L SAL F
Sbjct: 110 SKSGITQLYSHQVEAWQAYKKGKDIILQTPTSSGKSISFLIPIIHECLK---GKSALVFF 166
Query: 308 PTKALAQDQLRALLAMTKAFDASI--DIGVYDGDTTQKDRMWLRDN-ARLLITNPDMLHM 364
KALA DQ+ + + D +I I +GD ++R L N +L PD+ +
Sbjct: 167 NLKALAFDQVEKIRSFVSHLDENIRPQILNINGDIPPQERKLLYSNQPSILCVTPDVWNH 226
Query: 365 SILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRR 424
+ Y QF SN F ++ +I V DE H Y+G FG H AL+ RR
Sbjct: 227 ELNNY--QFD---SNW---GFRETIRKLSII-------VCDEMHFYQGIFGSHFALLNRR 271
Query: 425 LCRLCSHVYGSDPS---FVFSTATSANPREHCMELAN---LSTLELIQNDGSPCAQKLFV 478
+ V G+D S ++F++AT +N E +++N S L +I G+ ++ F+
Sbjct: 272 TQLMIESV-GNDISKLQYIFASATISNSSEIAQKISNREEQSNLAIIDQSGAKRSEITFI 330
Query: 479 LWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLC 538
P RN + + + A +V G+ I FC SR+L
Sbjct: 331 SLKP------------------RN------NTFYQTAQFAAMLVSKGIVGICFCDSRELV 366
Query: 539 ELVLSYTRE-ILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGI 597
+++ + R+ ++E PHL +SI + A R +I D GK+ + +T+ALE G+
Sbjct: 367 KVLTNAIRKALIEMQLPHLGESISAFYGSMKANQRNKIIADIQSGKVKFIISTSALEAGL 426
Query: 598 DVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSP 657
D+G ID T+ +PGSI + Q+AGR+GR+E L + +D Y+ YPE+L P
Sbjct: 427 DIGCIDATIVHSYPGSILAFRQRAGRAGRQEAGLLVFIPSKRSIMDSYYANYPERLLSDP 486
Query: 658 IECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFG-SGLSSGITTLKNRGYLSSDPSL 716
E + + LEQH++ E + ++FG SG + + N + S
Sbjct: 487 PEIINFNHNYETTLEQHILACCKESKPTQAQIARHFGSSGNAIARQLIGNNQLIFSYNQR 546
Query: 717 DSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYM 776
++ + Y+ H K I +R ++ I+ S E EE S A +VY GA+Y+
Sbjct: 547 LTTNRNLGYV-HSK-----IKVRGNTNQNISYINQDSAEEFEESSASSALREVYPGAIYL 600
Query: 777 HQGH-----TYLVKELNLSSKIAL 795
Q Y +ELNL+ A+
Sbjct: 601 AQDFDGNPVQYKSQELNLTEGKAI 624
>gi|119719770|ref|YP_920265.1| DEAD/DEAH box helicase domain-containing protein [Thermofilum
pendens Hrk 5]
gi|119524890|gb|ABL78262.1| DEAD/DEAH box helicase domain protein [Thermofilum pendens Hrk 5]
Length = 744
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 193/720 (26%), Positives = 321/720 (44%), Gaps = 99/720 (13%)
Query: 247 ALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYM 306
ALKS GI++LY QAE+I + +G N ++ T +GK+ + +P+LE L + + + +
Sbjct: 47 ALKSRGIARLYRFQAEAIESIRSGNNTLIIAGTGTGKTEAFLVPILERLYREPEETGILV 106
Query: 307 FPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRD-NARLLITNPDMLHMS 365
+PTKALA+DQ+ + + A + VYDGDT +K+R L+ RLL+TNPDMLH+S
Sbjct: 107 YPTKALARDQVERIYSYAGAV-FGFRVSVYDGDTPEKEREMLQVYPPRLLVTNPDMLHLS 165
Query: 366 ILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRL 425
+ G V I +FVV+D+AH Y G FG H +L+R+
Sbjct: 166 LRRGEG--------------------VKPILEKAKFVVLDDAHIYSGVFGSHVHYVLKRM 205
Query: 426 CRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSC 485
R +D FV S+AT NPRE +L +++ + A V+ P +
Sbjct: 206 KRFMP----ADAVFVASSATIGNPREFSQKLFG-EECRVVEAGLTRRAPVYHVMVRPAAR 260
Query: 486 LRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCE-LVLSY 544
R ++E L + + LR + F S K+ E L +
Sbjct: 261 SR-----------------------MAEALRLLKILAERRLRTLLFVDSHKVAESLSVLA 297
Query: 545 TREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDV 604
RE L+ + V+RAG + RR +E G+L V T LELGID+G +D
Sbjct: 298 QREGLK---------VSVHRAGLLPSHRRSVEEKLRKGELDAVVTTPTLELGIDIGELDA 348
Query: 605 TLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHID 664
+ G P + + Q+AGR GRR R V + + P+ Y+ + P + F + +D
Sbjct: 349 VVLYGVPPTFSKYVQRAGRVGRRGRTGYVVMILGDDPISSYYERNPAEFFNQKPDPVFLD 408
Query: 665 AQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPS--LDSSAKI 722
N +V+ HLV A + P L G L G L P ++ +++
Sbjct: 409 PLNEEVMRVHLVAMAQDAPFRL----DSLGGAERRVCEKLLEEGLLRLAPGGFVEPTSRG 464
Query: 723 FEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTY 782
++ +IR I + V D + +V+ E +A ++Y GA+Y+H G Y
Sbjct: 465 LRFLASRD------NIRGIGEQVKIVTD--TGKVIGFREMPQAIKELYPGAIYIHGGTPY 516
Query: 783 LVKEL-NLSSKIALCQKADLKYFTKTRDYT---DIHVSGGNNAYATKISKDQLTKTTAQA 838
+ + +++ L + + T YT + V + + ++S +L A
Sbjct: 517 ISLGIEGRKARVKLLPTSTIPVTTSPLYYTWPFENEVLDERSVFGIRVSYLEL--EVADH 574
Query: 839 LACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRS 898
+ VT ++ G I +E L Y ++++ + +++ + + QN
Sbjct: 575 VYGYVTKSF------PEGHVISQKILEEEL-TYRFKTKGLLLEMQPNPQWSELQN---AE 624
Query: 899 GLHAASHALLHVVPIYVRCNFSDLAP-ECPNPHDSRYFPERILLYDRHPGGTGVSKQVTD 957
HA HAL++ + V +D+ P+ H I +YD PGG+GV+KQ+ +
Sbjct: 625 AFHAVEHALIYAGQLVVGAAPTDMGGISFPSGH--------IYIYDAFPGGSGVTKQLLE 676
>gi|326772980|ref|ZP_08232264.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Actinomyces
viscosus C505]
gi|326637612|gb|EGE38514.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Actinomyces
viscosus C505]
Length = 956
Score = 200 bits (508), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 148/529 (27%), Positives = 227/529 (42%), Gaps = 66/529 (12%)
Query: 482 PTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELV 541
P + + ++ D D + S + E + L +++ G R + F RSR+ E+V
Sbjct: 369 PVTSGATPPGSAEPDSGDPGEDPSARRSAVVEAAELLVDLLSVGARALVFVRSRRSAEVV 428
Query: 542 LSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGH 601
R L + P LV ++ YR GY+ E+RR +E D G+L +A TNALELGIDV
Sbjct: 429 AERARHTLGLSLPELVGTVSAYRGGYLPEERRALEADLRSGRLRALATTNALELGIDVTG 488
Query: 602 IDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECC 661
+D L G+PG+ SL QQAGR+GR LAV +A + PLD Y + +PE +F +P E
Sbjct: 489 LDAVLIAGWPGTRVSLGQQAGRAGRAGTRGLAVLIASDNPLDAYLVHHPEAVFAAP-EAT 547
Query: 662 HIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAK 721
D N VL HL AA E PL D FG + + L RG L P+
Sbjct: 548 VFDPANPYVLAPHLCAAASEAPLR-ASDLALFGLADDTLLRELVGRGALRRRPT-----G 601
Query: 722 IFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHT 781
F + P S+R V++ + V+ ++ + A V+EGAVY+HQG
Sbjct: 602 WFWNVNLPGRPQDLTSLRGDGPPEVPVVEADTGVVIGTVDGAAADSTVHEGAVYVHQGRV 661
Query: 782 YLVKELNLSSKIALC-QKADLKYFTKTRDYTDIHV------------------------- 815
Y+V+E L+ +AL QKA + Y T+ R + + +
Sbjct: 662 YVVEE--LADDVALVRQKAAVGYRTRARSRSSVRIIAEREQQVWGRPGQTTPGNSREPSA 719
Query: 816 -------SGGNNAYATKISKDQLTKTTAQALACTV-----------TTTW---------- 847
G+ + I A + T TW
Sbjct: 720 REPEEPAGPGDGPSGSSIPASTGPDPAGSGRASSSPGDAPEPPGAGTITWSFGSVEVTSQ 779
Query: 848 -FGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSV-KAVVEQNFSFRSGLHAASH 905
G+ R+ G + L + ++ + AVW +PQ V +A + LHAA H
Sbjct: 780 VTGYQRMALPGGEVVSQHALEMDEHVLPTAAVWWTIPQEVCEAAGLEPTDLPGALHAAEH 839
Query: 906 ALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
A + ++P+ C+ D+ H P + ++D H GG G +++
Sbjct: 840 ASIGMLPLLATCDRWDIGGLSTAMHPQTGAPT-VFVHDGHAGGAGFAER 887
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 147/298 (49%), Gaps = 49/298 (16%)
Query: 215 GSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVV 274
G G++VH++ AR + PD + +A + G+ + ++HQ + ++ AG++ V
Sbjct: 18 GRDGRLVHLQRTPARPGHHTDWPDWADPDLVAAYRRLGVERPWTHQVAAAHSAHAGRHTV 77
Query: 275 VATMTSSGKSLCYNLPVLEAL-------------SHDLSSSALYMFPTKALAQDQLRALL 321
+AT T SGKSL LP L + +H + LY+ PTKALA DQ AL
Sbjct: 78 LATGTGSGKSLAAWLPALSDVLAAQSPGADSRISAHTRRPTTLYLSPTKALAADQAAALT 137
Query: 322 AMTKAFDA-------------SIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILP 368
+ + ++ G DGDT +R W+R +A +++TNPD LH S+LP
Sbjct: 138 RLIGELETVQREAGTPAGSLRTVRAGTCDGDTLLPERDWVRAHADVVLTNPDFLHFSLLP 197
Query: 369 YHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRL 428
H ++SR+L L R++VIDE HAY+G G H AL+LRRL RL
Sbjct: 198 GHERWSRLLRGL-------------------RYIVIDECHAYRGILGAHVALVLRRLLRL 238
Query: 429 CSHVY--GSDPSFVFSTATSANPREHCMELANLSTLELIQ--NDGSPCAQKLFVLWNP 482
+ + G P + ++AT+A P L + +++ +D +P ++ LW P
Sbjct: 239 VARLRPRGPQPVVLCASATAAEPALTAARLIGVEPDDVVAVTDDAAPAGERTLALWQP 296
>gi|449522295|ref|XP_004168162.1| PREDICTED: putative ATP-dependent helicase HRQ1-like, partial
[Cucumis sativus]
Length = 489
Score = 199 bits (507), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 117/263 (44%), Positives = 175/263 (66%), Gaps = 14/263 (5%)
Query: 1 MNKSRGDNSSCLCPVWLKKIVEAFAFVSIFSAHLQLRREKVILSHVKGALNQLEKFGVRV 60
+N +RG SSC+CP+WLKKI++AF+F+++FS LQL+ E + +S ++ A +QL+K +
Sbjct: 238 LNSTRG--SSCICPIWLKKIMKAFSFLNVFSMFLQLQEEIMTVSRLEQATDQLQKRRLMF 295
Query: 61 GIEDIENLAVLCPKVVQFANDDMESKNHDDSIVIINVSTEERDKVEDNLGSGQKAISLSK 120
+EDI NL+ LCPK V FA+ +E D I+II + TE+ + ++++ + ++S
Sbjct: 296 CMEDIHNLSRLCPKAVHFASGRLEDTRVDKLIIIIYL-TEKNGQPKEDIDN-----TVSM 349
Query: 121 IFNAMKKRERSFKTNLWEAVNLLMCKL---QKRVMSLSVEDLLTYVKERRTDVRGNEVKR 177
N +K+RERSFK LWEA+ M K ++ + S+E L+T TDV G+E KR
Sbjct: 350 DVNPLKRRERSFKLYLWEAIKCHMLKHGSGREMCVPFSLEALIT---SNETDVDGSETKR 406
Query: 178 ARRSQSSTSSSHSFQRRCSDKSQLLPLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIP 237
A++S +++SSS S + RC D +LLP +MVEHL K +G +GQ+VH+ DI ARKA VEIP
Sbjct: 407 AKKSDTASSSSQSDRIRCHDTLKLLPEDMVEHLGKSVGPEGQIVHINDILARKANYVEIP 466
Query: 238 DALLDNTKSALKSTGISKLYSHQ 260
L ++ SALK G++KLYSHQ
Sbjct: 467 KELSNSVVSALKCIGVAKLYSHQ 489
>gi|389796784|ref|ZP_10199835.1| Distinct helicase family with a unique C-terminal domain including
a metal-binding cysteine cluster [Rhodanobacter sp.
116-2]
gi|388448309|gb|EIM04294.1| Distinct helicase family with a unique C-terminal domain including
a metal-binding cysteine cluster [Rhodanobacter sp.
116-2]
Length = 348
Score = 199 bits (505), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 104/257 (40%), Positives = 143/257 (55%), Gaps = 22/257 (8%)
Query: 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSL 285
+ R+ +P L AL+S GI LYSHQAE+ A+ G V + T T+SGKSL
Sbjct: 43 VPGREGSFAPLPAGLPSALAQALRSRGIEALYSHQAEAWAAAQRGDQVAIVTPTASGKSL 102
Query: 286 CYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDR 345
CY LPV+ A + ALY+FPTKALAQDQ+ LL + KA + + +DGDT R
Sbjct: 103 CYTLPVISAAKQQ-GAKALYLFPTKALAQDQVAELLELNKAGELGVKAFTFDGDTPGDAR 161
Query: 346 MWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVID 405
+R + ++++NPDMLH +ILP+H ++++ NL R+VVID
Sbjct: 162 QAIRLHGDIVVSNPDMLHQAILPHHTKWAQFFENL-------------------RYVVID 202
Query: 406 EAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELI 465
E H Y+G FG H A ++RRL R+C+ YG P F+ +AT NPREH L + I
Sbjct: 203 EVHTYRGVFGSHVANVIRRLKRVCA-FYGVTPQFILCSATIGNPREHAEALIE-HPVTAI 260
Query: 466 QNDGSPCAQKLFVLWNP 482
G+P K +LWNP
Sbjct: 261 TESGAPSGDKHVLLWNP 277
>gi|75812721|ref|YP_320338.1| DEAD/DEAH box helicase [Anabaena variabilis ATCC 29413]
gi|75705477|gb|ABA25149.1| DEAD/DEAH box helicase-like protein [Anabaena variabilis ATCC
29413]
Length = 906
Score = 198 bits (504), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 178/595 (29%), Positives = 284/595 (47%), Gaps = 66/595 (11%)
Query: 218 GQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVAT 277
G++ E I A++A L IPD + K AL +GI++LYSHQ E+ A G+++++ T
Sbjct: 79 GKLQSCEVIPAQEAKLYPIPDDIHPLVKLALSKSGITQLYSHQVEAWQAYKKGEDIILQT 138
Query: 278 MTSSGKSLCYNLPVL-EALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASI--DIG 334
TSSGKS+ + +PV+ E L SAL F KALA DQ+ + + D +I I
Sbjct: 139 PTSSGKSISFLIPVIHECLK---GKSALVFFNLKALAFDQVEKIRSFVSHLDENIRPQIL 195
Query: 335 VYDGDTTQKDRMWLRDN-ARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVY 393
+GD ++R L N +L PD+ + + Y QF SN F ++
Sbjct: 196 NINGDIPPQERKQLYSNQPSILCVTPDVWNHELNNY--QFD---SNW---GFRETIRKLS 247
Query: 394 LIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPS---FVFSTATSANPR 450
+I V DE H Y+G FG H AL+ RR + V G+D S ++F++AT +N
Sbjct: 248 II-------VCDEMHFYQGIFGSHFALLNRRTQLMIESV-GNDISKLQYIFASATISNSS 299
Query: 451 EHCMELAN---LSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKT 507
E +++N S L +I G+ ++ F+ P N T
Sbjct: 300 EIAQKISNREEQSNLAIIDQSGAKRSEITFISLKPR---------------------NNT 338
Query: 508 SSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTRE-ILEETAPHLVDSICVYRAG 566
++V+ A +V G+ I FC SR+L +++ + R+ ++E PHL ++I +
Sbjct: 339 FYQTAQVA---AMLVSKGIVGICFCDSRELVKVLTNAIRKALIEMQLPHLGETISAFYGS 395
Query: 567 YVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGR 626
A R +I D GK+ + +T+ALE G+D+G ID T+ +PGSI + Q+AGR+GR
Sbjct: 396 MKANQRNKIIADIQSGKVKFIISTSALEAGLDIGSIDATIVHSYPGSILAFRQRAGRAGR 455
Query: 627 RERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSL 686
+E L + +D Y+ YPE+L P E + + LEQH++ E +
Sbjct: 456 QEAGLLVFIPSKRSIMDSYYANYPERLLSDPPEIINFNHNYETTLEQHILACCKESKPTQ 515
Query: 687 IYDEKYFG-SGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESER 745
++FG SG + + + + S ++ + Y+ H K I +R +
Sbjct: 516 AQIARHFGNSGNAIARQLIGDNQLIFSYNQRLTTNRNLGYV-HSK-----IKVRGNTDQN 569
Query: 746 YEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGH-----TYLVKELNLSSKIAL 795
I+ S E EE S A +VY GA+Y+ Q Y +ELNL+ A+
Sbjct: 570 ISYINQDSAEEFEESSASSALREVYPGAIYLAQDFDGNPVQYKSQELNLTEGKAI 624
>gi|335050983|ref|ZP_08543924.1| helicase C-terminal domain protein [Propionibacterium sp. 409-HC1]
gi|333768286|gb|EGL45482.1| helicase C-terminal domain protein [Propionibacterium sp. 409-HC1]
Length = 503
Score = 198 bits (504), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 128/417 (30%), Positives = 215/417 (51%), Gaps = 29/417 (6%)
Query: 512 SEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAED 571
++ + L A++ GL+ I F SR L E++ ++ ++ + A + YRAGY+ ED
Sbjct: 24 TDATGLVADLADAGLQTICFVASRSLAEVISAHAQDRVTSGA-----RVTAYRAGYLPED 78
Query: 572 RRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPS 631
RRRIE G + V ATNALELG+D+ +D + G+PG +++LWQQAGR+GR R +
Sbjct: 79 RRRIEARLQDGSVRAVVATNALELGVDISGMDAVVIAGYPGRLSALWQQAGRAGRSGRDA 138
Query: 632 LAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEK 691
L V +A E PLDQY ++PE LF S +E + N VL H+ AA E LS DE+
Sbjct: 139 LVVLMARENPLDQYLFEHPELLFSSSVESTVLHPDNPYVLGPHVAAAAQEAYLSPA-DEE 197
Query: 692 YFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDM 751
++GS + TL + L ++F + E+ I +R+ + ++ID+
Sbjct: 198 FYGSAFAGICKTLTGQNVLRR-----RGNRLF-WTRPERA-VDAIDLRSAAGKGIDIIDV 250
Query: 752 QSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYT 811
+ V+ ++E+ A V+ GAVY+HQG +LV E N AL + Y+T+ +
Sbjct: 251 STGRVIGGVDEAAADRTVHPGAVYLHQGDQWLVDEYNPVEHHALVHQDLPGYWTQPQ--- 307
Query: 812 DIHVSGGNNAYATKISKDQLTKTTAQA-LACT---VTTTWFGFYRLWRGSGIIFDTVELY 867
+A +I +++ + +AC +T G+ R + ++D+V L
Sbjct: 308 --------SASTVRILREERRRACGPGYVACGQVELTEQVVGYLRRDEITNDVWDSVALE 359
Query: 868 LPKYSYESQAVWIQVPQSVKAVVEQNFSFRSG-LHAASHALLHVVPIYVRCNFSDLA 923
+P ++ +QA W +P V ++ + +G H A H + ++P+Y C+ D+
Sbjct: 360 MPTHTMITQACWWVIPDKVVDDLKFDAVHLAGAAHGAEHTAIGLLPMYSPCDRWDVG 416
>gi|163784567|ref|ZP_02179418.1| predicted helicase [Hydrogenivirga sp. 128-5-R1-1]
gi|159880165|gb|EDP73818.1| predicted helicase [Hydrogenivirga sp. 128-5-R1-1]
Length = 653
Score = 197 bits (501), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 135/505 (26%), Positives = 240/505 (47%), Gaps = 59/505 (11%)
Query: 399 IRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELAN 458
+ F+V+DE H Y+G G H I++RL R+ ++ P F+ ++AT NP + L
Sbjct: 6 LNFIVLDEIHTYRGIIGSHIYNIIKRLKRIVNYYKSKKPVFITNSATIHNPTKFATTLIG 65
Query: 459 LSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLF 518
+E I G+P +K+ ++N T+ +E+S+L
Sbjct: 66 EEVIE-INKSGAPSPEKVVQIFNRTTT--------------------------NELSHLI 98
Query: 519 AEMVQHGLRCIAFCRSRKLCELVLSYTREILEETA-PHLVDSICVYRAGYVAEDRRRIER 577
A+ + + I F SRK EL+ ++ L + P L D + YR+GY E+RR IE
Sbjct: 99 AKNIIEDISTIIFVDSRKEAELLSLRVKDTLRKIGRPDLEDKVSPYRSGYTPEERREIEF 158
Query: 578 DFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVA 637
+ + +T+ALE+GID+G ++ + G+PG++A LWQ+ GR+GRR++ + + +
Sbjct: 159 KTMTRNILAIISTSALEMGIDIGDLECCILAGYPGTLAQLWQRFGRAGRRDKKAYNILIP 218
Query: 638 FEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL---SLIYDEKYFG 694
+ LDQYF+K PE+LF +E I+ +N +L +H+ A E P+ L DEK
Sbjct: 219 RKNALDQYFVKNPEELFLRQMEEPVINPKNKYILRKHIPVMAAELPVKISELDEDEKEVA 278
Query: 695 SGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSN 754
L K + S+ L +S + SIR+ S Y++++ +
Sbjct: 279 RQL------YKEKKLRFSNNKLYASRQ------------EPFSIRSAGSS-YKIVETIKD 319
Query: 755 EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTK--TRDYTD 812
+V+ +I E ++ + GA+Y+H G ++V+ ++ K K+++ Y T+ + D
Sbjct: 320 KVIGDISEDILLYEAHPGAIYLHNGEKFVVEYVDQKEKTVYVVKSNVSYITEPLKESFID 379
Query: 813 IHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYS 872
I G+ KI K ++ K + + R + + F E
Sbjct: 380 IIEIEGHK----KIGKIEIFKGKVNVKTTVLGYSIRDLERDRKLDEVFFHEEEKMT--RE 433
Query: 873 YESQAVWIQVPQSV-KAVVEQNFSF 896
+E+Q W VP+ + K ++++NF F
Sbjct: 434 FETQGFWFTVPEFLEKEIIKKNFKF 458
>gi|335054602|ref|ZP_08547409.1| helicase C-terminal domain protein [Propionibacterium sp. 434-HC2]
gi|333764071|gb|EGL41477.1| helicase C-terminal domain protein [Propionibacterium sp. 434-HC2]
Length = 478
Score = 197 bits (501), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 128/412 (31%), Positives = 212/412 (51%), Gaps = 29/412 (7%)
Query: 517 LFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIE 576
L A++ GL+ I F SR L E++ ++ ++ + A + YRAGY+ EDRRRIE
Sbjct: 4 LVADLADAGLQTICFVASRSLAEVISAHAQDRVTSGA-----RVTAYRAGYLPEDRRRIE 58
Query: 577 RDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYV 636
G + V ATNALELG+D+ +D + G+PG +++LWQQAGR+GR R +L V +
Sbjct: 59 ARLQDGSVRAVVATNALELGVDISGMDAVVIAGYPGRLSALWQQAGRAGRSGRDALVVLM 118
Query: 637 AFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSG 696
A E PLDQY ++PE LF S +E + N VL H+ AA E LS DE+++GS
Sbjct: 119 ARENPLDQYLFEHPELLFSSSVESTVLHPDNPYVLGPHVAAAAQEAYLSPA-DEEFYGSA 177
Query: 697 LSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEV 756
+ TL + L ++F + E+ I +R+ + ++ID+ + V
Sbjct: 178 FAGICKTLTGQNVLRR-----RGNRLF-WTRPERA-VDAIDLRSAAGKGIDIIDVSTGRV 230
Query: 757 LEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVS 816
+ ++E+ A V+ GAVY+HQG +LV E N AL + Y+T+ +
Sbjct: 231 IGGVDEAAADRTVHPGAVYLHQGDQWLVDEYNPVEHHALVHQDLPGYWTQPQ-------- 282
Query: 817 GGNNAYATKISKDQLTKTTAQA-LACT---VTTTWFGFYRLWRGSGIIFDTVELYLPKYS 872
+A +I +++ + +AC +T G+ R + ++D+V L +P ++
Sbjct: 283 ---SASTVRILREERRRACGPGYVACGQVELTEQVVGYLRRDEITNDVWDSVALEMPTHT 339
Query: 873 YESQAVWIQVPQSVKAVVEQNFSFRSG-LHAASHALLHVVPIYVRCNFSDLA 923
+QA W +P V ++ + +G H A H + ++P+Y C+ D+
Sbjct: 340 MITQACWWVIPDKVVDDLKFDAVHLAGAAHGAEHTAIGLLPMYSPCDRWDVG 391
>gi|296268213|ref|YP_003650845.1| DEAD/DEAH box helicase [Thermobispora bispora DSM 43833]
gi|296091000|gb|ADG86952.1| DEAD/DEAH box helicase domain protein [Thermobispora bispora DSM
43833]
Length = 902
Score = 196 bits (498), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 130/411 (31%), Positives = 196/411 (47%), Gaps = 35/411 (8%)
Query: 556 LVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIA 615
L D + YR GY+AEDRR +E+ G+L +A TNALELG+D+ +D + G+PG+ A
Sbjct: 459 LADRVAAYRGGYLAEDRRLLEKALRTGELTALATTNALELGVDISGLDAVIIAGWPGTRA 518
Query: 616 SLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHL 675
SLWQQAGR+GR + +L V +A + PLD Y + +PE +F P+E +D N VL HL
Sbjct: 519 SLWQQAGRAGRTGQDALVVLIARDDPLDTYIVHHPEAVFGQPVEAIVLDPDNPYVLAPHL 578
Query: 676 VCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHT 735
AA E PL+ D + FG + L RG L PS Y H + +
Sbjct: 579 CAAAAEIPLTE-DDLEIFGPAARDVVDDLVRRGMLRQRPS-------GWYWTHRERAADL 630
Query: 736 ISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIAL 795
IR V++ + +L ++E A V+ GAVY+HQG TY V+ L+L + +AL
Sbjct: 631 ADIRGSGGNPIHVVESGTGRLLGTVDEPSAHTTVHPGAVYLHQGETYEVESLDLEAGVAL 690
Query: 796 CQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWR 855
AD Y T RD TDI + + + +L T + VT + +
Sbjct: 691 VSPADPDYATYPRDVTDIRMI--ESLRSRPFGPGELHFGTVE-----VTRQVVSYLKRRT 743
Query: 856 GSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNFSFRSGLHAASHAL-------- 907
+G + L LP + ++AVW +P + A RS H L
Sbjct: 744 QTGEVLGEEPLDLPPRTLCTRAVWWTLPDTALA------PLRSAEHGGPVDLGGAAHAAE 797
Query: 908 ---LHVVPIYVRCNFSDLAPECPNPH-DSRYFPERILLYDRHPGGTGVSKQ 954
+ ++P++ C+ D+ H D+ + +YD H GG G +++
Sbjct: 798 HASIGLLPLFATCDRWDIGGVSTELHPDTGML--TVFVYDGHDGGAGFAER 846
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 120/337 (35%), Positives = 175/337 (51%), Gaps = 42/337 (12%)
Query: 217 QGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVA 276
+G + HVE + AR+ PD + + L+ GIS L+ HQ + G+NV++A
Sbjct: 31 RGLVTHVEHVPAREGGDARWPDWVPEPLVGRLRHLGISGLWEHQLATAEHVRRGENVIIA 90
Query: 277 TMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL--LAMTKAFDASIDIG 334
T T+SGKSL Y +P + + + LY+ PTKALA DQL + L +T+ A+
Sbjct: 91 TGTASGKSLAYLVPAITEIF--AGGTVLYLTPTKALAADQLATIRKLRLTEVRAAT---- 144
Query: 335 VYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYL 394
YDGDT ++R W+R +A ++TNPDMLH SILP HG ++ LRL
Sbjct: 145 -YDGDTPPEERSWVRRHANYVLTNPDMLHRSILPRHGSWASFWRRLRL------------ 191
Query: 395 IFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCM 454
VV+DE H Y+G FG H A ILRRL R+C+ YGS P F+ ++AT+++P
Sbjct: 192 -------VVVDECHGYRGVFGSHVAQILRRLRRVCAK-YGSRPVFLLASATASDPGAAGK 243
Query: 455 ELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEV 514
L L E + D SP F LW P T++ R A + ++ +E
Sbjct: 244 RLTGLDMAE-VTADASPRGAMTFALWEP----------PLTELRGERGAPIRRTA-TAEA 291
Query: 515 SYLFAEMVQHGLRCIAFCRSRKLCELV-LSYTREILE 550
+ L ++V G+R + F RSR+ E V L+ R + E
Sbjct: 292 ADLLTDLVVEGVRTLVFVRSRRGAETVALTAKRHLTE 328
>gi|384496104|gb|EIE86595.1| hypothetical protein RO3G_11306 [Rhizopus delemar RA 99-880]
Length = 733
Score = 196 bits (498), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 144/452 (31%), Positives = 205/452 (45%), Gaps = 97/452 (21%)
Query: 206 MVEHLRKGIGSQGQMVHVED---ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAE 262
++E LR GQ+ H+E+ + ++ + E+ D L AL+ GIS LY HQA
Sbjct: 194 VIERLRSESFYAGQLDHLENQKLLPSKPPIYGEVED-LPKEIVCALEKKGISNLYIHQAN 252
Query: 263 SIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLA 322
+I GK+V+V+T T+ N P Y + K + +
Sbjct: 253 AIKGIREGKHVIVSTSTAR------NDPA-------------YAYSKKHVVYGK------ 287
Query: 323 MTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRL 382
+ +DGDT R RD+A ++ TNPDMLH +IL HG++ LS L+
Sbjct: 288 ----------VSTFDGDTPTDQRALTRDHASVIFTNPDMLHHAILANHGRWQSFLSKLKY 337
Query: 383 IAF---------SLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVY 433
I S + +++L E H Y G FG HTA ILRRL RLC H
Sbjct: 338 IVVDGKESVRKKSGIDPQLFL-----------ELHVYSGLFGLHTAYILRRLRRLCDHDG 386
Query: 434 GSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKS 493
D F+ +AT ANP + I DG+P QK F+LWNP S
Sbjct: 387 NRDYRFIACSATIANPEK------------WINQDGAPHGQKHFILWNP----------S 424
Query: 494 QTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETA 553
+ R A ++E + L +++ +R IAFC+ RK CEL++ + RE LE
Sbjct: 425 LITPQERRGA-------VAEGAILLEYLLERKVRTIAFCKVRKTCELLMKHVRESLERKQ 477
Query: 554 P-HLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGH--------IDV 604
++ + YR GY E+RRRIE+ F G L V ATNALELG+D+G +D
Sbjct: 478 KREVLQKVMSYRGGYRPEERRRIEKRLFDGDLLVVIATNALELGVDIGSLVVADKHPLDQ 537
Query: 605 TLHLGFPGSIASLWQQAGRSGRRERPSLAVYV 636
+ SI+ W +A R PS V +
Sbjct: 538 YYAPKYVSSISQRWVKAPDPRFRPYPSQYVNI 569
Score = 102 bits (255), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 121/235 (51%), Gaps = 37/235 (15%)
Query: 676 VCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHT 735
+ A +HPL Y KY ++++ R + DP PS
Sbjct: 527 LVVADKHPLDQYYAPKY--------VSSISQRWVKAPDPRF------------RPYPSQY 566
Query: 736 ISIRAIESERYEVIDMQSNE--VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKI 793
++IR + + + VID+ N+ V+EEIE S+A F++YEGA+++HQG TYLV+E ++ +
Sbjct: 567 VNIRHVNQDTFAVIDVTDNKNTVMEEIEVSRAGFEIYEGAIFIHQGRTYLVEECHIDKRY 626
Query: 794 ALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALAC----TVTTTWFG 849
A + + T RDYTD+ +A T SK Q+ +T + L C V+TT FG
Sbjct: 627 AKVHLVRVNWTTTQRDYTDV------DAIKTDASK-QIMET--KNLVCYGQVRVSTTVFG 677
Query: 850 FYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQ-SVKAVVEQNFSFRSGLHAA 903
+YR+ + + I+ D+ E+Y+ S +W VP +V+ + E + + +HAA
Sbjct: 678 YYRIDQRNRIM-DSHEVYMDPIITFSNGIWADVPSAAVRQLKELDIDPMAAVHAA 731
>gi|70606120|ref|YP_254990.1| DEAD/DEAH box helicase [Sulfolobus acidocaldarius DSM 639]
gi|449066322|ref|YP_007433404.1| DEAD box helicase [Sulfolobus acidocaldarius N8]
gi|449068598|ref|YP_007435679.1| DEAD box helicase [Sulfolobus acidocaldarius Ron12/I]
gi|68566768|gb|AAY79697.1| DEAD box helicase [Sulfolobus acidocaldarius DSM 639]
gi|449034830|gb|AGE70256.1| DEAD box helicase [Sulfolobus acidocaldarius N8]
gi|449037106|gb|AGE72531.1| DEAD box helicase [Sulfolobus acidocaldarius Ron12/I]
Length = 746
Score = 196 bits (498), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 206/744 (27%), Positives = 326/744 (43%), Gaps = 140/744 (18%)
Query: 243 NTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLE-ALSHDLSS 301
N K LK GI +LY Q E+ G NV++ + T +GK+ + +P+L+ AL + S
Sbjct: 45 NLKQMLKQVGIHRLYKFQEEAYNKISHGNNVMIVSGTGTGKTEAFLIPLLDLALKGERS- 103
Query: 302 SALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDN-ARLLITNPD 360
+ ++PTKALA+DQL + + +++GV+DGDT +K+R L +N +LITNPD
Sbjct: 104 --VLVYPTKALARDQLERVRRLASPL--GVEMGVFDGDTPEKERKRLYENPPHILITNPD 159
Query: 361 MLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTAL 420
M+H+ LP +F R L+ T + +F DE H+Y G G H +
Sbjct: 160 MIHIG-LPLSYRFRR-----------LIRTADHFVF--------DEVHSYDGVLGSHIRM 199
Query: 421 ILRRLCRLCS-HVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFV- 478
I RL L HV GS S A+P + E E+I GSP + + +
Sbjct: 200 ISDRLRELTDYHVIGS------SATIDASP--YLFEELFGVKGEIIY--GSPRRKGVAIH 249
Query: 479 -LWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKL 537
L N S R L+ +YL A +V+ G + + F S+++
Sbjct: 250 ALLNIGSASRWTLS-----------------------AYLTAFLVKEGYKVLTFVDSQQM 286
Query: 538 CELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGI 597
EL+ T EE +I V+RAG EDR ++E GK+ GV AT LELGI
Sbjct: 287 AELIAKITARFGEE-------NIHVHRAGINKEDRLKVEESIKSGKIKGVIATPTLELGI 339
Query: 598 DVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSP 657
D+G +DV + P + Q+AGR+GRR + + E P+D Y+++ P + F
Sbjct: 340 DIGDLDVVIMAENPPNYTKYLQRAGRAGRRSKIGYIFTLLGEDPIDTYYLRKPTEFFNRK 399
Query: 658 IECCHIDAQNHKVLEQHLVCAALEHPLSLIYDE-------KYFGSGLSSGITTLKNRGYL 710
+ D N +V++ H A L SL K + + G ++N +
Sbjct: 400 VLPLTFDVSNKEVVKIH-AAAYLAEKGSLRLGRVIPKAWVKAYEELVKDGKVKIENN-VV 457
Query: 711 SSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVY 770
S+ P L + Y+ + S T I + D N L E E A + +Y
Sbjct: 458 SALPPL------YSYVRSTYLRS-TGPIVGL-------YDRDGNR-LGERELPVALYDIY 502
Query: 771 EGAVYMHQGHTYLVKELNLSSKIALCQKA--DLKYFTKTRDYTDIHVSGGNNAYATK-IS 827
A+Y Y+V+++ L S A ++A DL Y+TK Y+T +S
Sbjct: 503 PQAIYFISKRNYIVEDVKLDSLRATLRRAKDDLSYYTKP-------------VYSTHLLS 549
Query: 828 KDQLTKTTAQALAC-------TVTTTWFGFYRLWRGSGIIFDTVELYLPK----YSYESQ 876
+++ + L ++ F Y + SG + + K ++Y ++
Sbjct: 550 FEEIEERKVFGLPVKYGISEIMISVDGFATYEI---SGNKNKPKQEFFYKEPIIFTYTTK 606
Query: 877 AVWIQVPQSVKAVVEQNFSFRS--GLHAASHALLHVVPIYVRCNFSDLAP-ECPNPHDSR 933
V I+ P ++E+ F S HA H L+ + + +DLA P H
Sbjct: 607 GVLIKHP-----ILEEFNEFDSIEAYHATEHVLISSARVVAGASMTDLAGISYPTGH--- 658
Query: 934 YFPERILLYDRHPGGTGVSKQVTD 957
+++YD GG+GVSK + D
Sbjct: 659 -----VVIYDSVVGGSGVSKLLYD 677
>gi|448574573|ref|ZP_21641335.1| ATP-dependent helicase [Haloferax larsenii JCM 13917]
gi|445732924|gb|ELZ84501.1| ATP-dependent helicase [Haloferax larsenii JCM 13917]
Length = 498
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 130/444 (29%), Positives = 209/444 (47%), Gaps = 12/444 (2%)
Query: 517 LFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPH-LVDSICVYRAGYVAEDRRRI 575
LF + VQ G + + F R+R+ E ++ L + H L D + Y + E R I
Sbjct: 3 LFCDFVQRGYQTLVFTRARQGTEQYANWCDSKLRKRGEHELADQVTAYHSALQDERRTTI 62
Query: 576 ERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVY 635
E G + GV +TNALELGIDVG +DV L G PG+ S +Q+AGR+GR E PSL V
Sbjct: 63 EAGLRDGSIRGVWSTNALELGIDVGSLDVVLLDGHPGTSMSTFQRAGRAGRGENPSLVVL 122
Query: 636 VAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGS 695
VA PLDQY M P+ LF E ++ N ++L+ H+ CAA E L D+ YFG+
Sbjct: 123 VASPNPLDQYCMANPDLLFDGDPEQAAVNPANTQILDDHVCCAAQELFLR-TSDDTYFGA 181
Query: 696 GLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNE 755
+ + +L + L S + ++YIG E P HT+ IR+I+ + E+ D +
Sbjct: 182 EYPATVASLDDADQLERFSS--RTGPRWKYIG-EDSPQHTMDIRSIDDRQIELYDRLRDR 238
Query: 756 VLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHV 815
L + A + GA+Y HQ +Y V E + L + + + TR T+ +
Sbjct: 239 TLTSLPFGDALRDAHPGAIYHHQKESYRVTEAEFDADRVLLKSVNTMGY--TRPLTEKRI 296
Query: 816 SGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYES 875
+ ++ + L T + Y + + LP+ + +
Sbjct: 297 TIEEELKTGGLASQETVSVGFADLTVAEEVTGYMLYDHPSDEDGVERAFDEPLPERTIRT 356
Query: 876 QAVWIQVP----QSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHD 931
+ ++ +P Q +KA E+ F + +HA HAL+ + P+ + C D+ H
Sbjct: 357 RGLYFTIPPQIEQDIKAASEEEDGFLASIHALEHALISLFPLEILCARRDVGGLSTEYHP 416
Query: 932 SRYFPERILLYDRHPGGTGVSKQV 955
+ I ++D HPGG G++++
Sbjct: 417 HTGW-STIFVHDGHPGGVGLTREA 439
>gi|342306693|dbj|BAK54782.1| putative ATP-dependent helicase [Sulfolobus tokodaii str. 7]
Length = 738
Score = 192 bits (488), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 193/722 (26%), Positives = 314/722 (43%), Gaps = 107/722 (14%)
Query: 245 KSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSAL 304
K +LK GI +LY +Q E++ L KN+++ + T +GK+ + +P+L+ S S L
Sbjct: 45 KDSLKKHGIERLYKYQEEALHKILDRKNIMIVSGTGTGKTEAFLIPILD-FSLKGERSVL 103
Query: 305 YMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNA-RLLITNPDMLH 363
++PTKALA+DQL +L T + + +GV+DGDT +K+R L +N +LITNPDM+H
Sbjct: 104 -VYPTKALARDQLERILKFTT--ELGVTVGVFDGDTPEKEREKLYENPPHILITNPDMIH 160
Query: 364 MSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILR 423
+ + H +F ++L T E + V DE H Y+G G H +I
Sbjct: 161 IGLALSH-RFRKLLR----------TAEHF---------VFDEVHVYEGVLGSHLRMISD 200
Query: 424 RLCRLCS-HVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNP 482
R+ HV S S A+P + E E+IQ VL +
Sbjct: 201 RIREFGDYHVIAS------SATIGASP--YLFEELFGVKGEIIQGTNRRKGVAFHVLLDI 252
Query: 483 TSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVL 542
S R + +YL + +++ GL+ + F S+++ E
Sbjct: 253 GSLSRWTI-----------------------AAYLASFLMKKGLKVLVFVDSQQMAE--- 286
Query: 543 SYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHI 602
+L + I V+RAG E+R ++E DF G++ GV AT LELGID+G +
Sbjct: 287 -----VLGKIIKRFGFDIPVHRAGINPEERIKVEEDFKRGRIMGVVATPTLELGIDIGDL 341
Query: 603 DVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCH 662
D + P S Q+AGR+GRR + + E P+D Y+ + P++ FK +
Sbjct: 342 DAVILAENPPSYVKYLQRAGRAGRRNKIGYVFTLLGEDPIDAYYNRRPQEFFKRKLTPLP 401
Query: 663 IDAQNHKVLEQHLVCAALEHPLSLIYD-EKYFGSGLSSGITTLKNRG-YLSSDPSLDSSA 720
D N +V++ H +E I K + LSS +K G Y S P L
Sbjct: 402 FDTTNMEVIKAHAAALVVEKGKVRISSLPKLWVKSLSS--LPVKISGDYAYSTPELVKFV 459
Query: 721 KIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGH 780
K + SIR+ ++ D ++ + E E A + +Y AVY+
Sbjct: 460 K-------------STSIRST-GPMVKIYD--GDKKIGERELPVALYDLYPEAVYLISKR 503
Query: 781 TYLVKELNLSSKIALCQKA--DLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQA 838
TY V+ ++LS A ++ D Y+TK T + ++ SK+ L
Sbjct: 504 TYTVESVDLSHLTAKVRRISDDTTYYTKPLYSTHLL------SFKEIESKEVLGLPVKYG 557
Query: 839 -LACTVTTTWFGFYRLWRGSGIIFDTVELYLP-KYSYESQAVWIQVPQSVKAVVEQNFSF 896
+ ++ F Y + + P +SY+++ + I+ P + F
Sbjct: 558 EIEIMISVDGFVVYDIMSKKNKPREERYYKEPITFSYQTKGIIIKHPILAEF---SEFDA 614
Query: 897 RSGLHAASHALLHVVPIYVRCNFSDLAP-ECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
HA H L+ + + +DLA P+ H +++YD GG+GVSK +
Sbjct: 615 IEAFHATEHVLISAARVTAGASLTDLAGISYPSGH--------VVIYDAVIGGSGVSKLL 666
Query: 956 TD 957
D
Sbjct: 667 FD 668
>gi|330835408|ref|YP_004410136.1| DEAD/DEAH box helicase domain-containing protein [Metallosphaera
cuprina Ar-4]
gi|329567547|gb|AEB95652.1| DEAD/DEAH box helicase domain-containing protein [Metallosphaera
cuprina Ar-4]
Length = 740
Score = 192 bits (488), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 194/721 (26%), Positives = 308/721 (42%), Gaps = 110/721 (15%)
Query: 246 SALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLE-ALSHDLSSSAL 304
+ L+ GI +LY +Q ESI + L G+NV + + T +GK+ + +P+LE AL + S +
Sbjct: 46 NGLEKLGIQRLYKYQYESISSILNGENVAIISGTGTGKTEAFLIPLLELALKGERS---V 102
Query: 305 YMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWL-RDNARLLITNPDMLH 363
++PTKALA+DQL + + F I + V DGDT + R + D +LITNPDM+H
Sbjct: 103 LIYPTKALARDQLSRINWLLN-FLPEIKVDVLDGDTDRAKRQKIYEDPPEILITNPDMIH 161
Query: 364 MSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILR 423
+ L F +++ VIDE H Y G G H IL
Sbjct: 162 VG-LALSPNFRQVIRG-------------------ADHYVIDEMHVYDGVLGSHLRRILD 201
Query: 424 RLCRLCS--HVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWN 481
R+ L HV G+ S A P L EL DG
Sbjct: 202 RIRELNGPIHVIGA------SGTIEATP---------LLFNELFGVDGK----------- 235
Query: 482 PTSCLRSVLNKSQTDMD---DTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLC 538
+R V + + D++ + T S SYL +V+ GL+ + F S+++
Sbjct: 236 ---IVRGVNRRRGMAIHALIDSKGVSRWTLS-----SYLAGLLVKEGLKTLVFVDSQQMA 287
Query: 539 ELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGID 598
E L + A ++ V+RAG + ++R +E G+L GV AT LELGID
Sbjct: 288 ER--------LAKIAERFGANLAVHRAGILPKERMEVEEKLRNGELHGVVATPTLELGID 339
Query: 599 VGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPI 658
+G +DV + P S Q+AGR+GRR++ L V + P+D YF++ P + F +
Sbjct: 340 IGSLDVVVMAENPPSYPKYIQRAGRAGRRDKLGLIFTVLGDSPIDNYFLRRPSEFFSRKL 399
Query: 659 ECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSL-D 717
D N +VL+ H LE L + LK G ++ + +
Sbjct: 400 TPITFDNSNMEVLKVHTAAFILE---KLGVNMNTLPDLWRRAAEELKKEGIIACENKVYY 456
Query: 718 SSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMH 777
S++ E++ + S ++ +E + + E E A + +Y G++YM
Sbjct: 457 STSSTREFVRKSSLRSSGPIVKVVEQRK-----------IGERELPAALYDLYPGSLYMV 505
Query: 778 QGHTYLVKELNLSSKIALCQK--ADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTT 835
TY VK L+L S A K D Y+TK DI T+ K
Sbjct: 506 SKRTYEVKSLDLRSLEARVVKIEQDKGYYTKPLYSVDI-----KEFKETESRKVLGLPAK 560
Query: 836 AQALACTVTTTWFGFYRLWRGSGIIFDTVELYLP-KYSYESQAVWIQVPQSVKAVVEQN- 893
L TV T + Y + + V+ P +++Y ++ + I+ P A+ + +
Sbjct: 561 YGELTVTVFVTGYVVYDYYSKREKPVNEVQYDNPIEFTYNTKGIIIKHP----AMDDWDL 616
Query: 894 FSFRSGLHAASHALLHVVPIYVRCNFSDLAP-ECPNPHDSRYFPERILLYDRHPGGTGVS 952
S HA H L+ + + +DL+ P+ H +++YD GG GVS
Sbjct: 617 LSSMEAYHATEHVLISAGRVVAGASLTDLSGISYPSGH--------VVIYDSSVGGNGVS 668
Query: 953 K 953
+
Sbjct: 669 R 669
>gi|15922649|ref|NP_378318.1| hypothetical protein ST2317 [Sulfolobus tokodaii str. 7]
Length = 753
Score = 192 bits (487), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 193/722 (26%), Positives = 314/722 (43%), Gaps = 107/722 (14%)
Query: 245 KSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSAL 304
K +LK GI +LY +Q E++ L KN+++ + T +GK+ + +P+L+ S S L
Sbjct: 60 KDSLKKHGIERLYKYQEEALHKILDRKNIMIVSGTGTGKTEAFLIPILD-FSLKGERSVL 118
Query: 305 YMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNA-RLLITNPDMLH 363
++PTKALA+DQL +L T + + +GV+DGDT +K+R L +N +LITNPDM+H
Sbjct: 119 -VYPTKALARDQLERILKFTT--ELGVTVGVFDGDTPEKEREKLYENPPHILITNPDMIH 175
Query: 364 MSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILR 423
+ + H +F ++L T E + V DE H Y+G G H +I
Sbjct: 176 IGLALSH-RFRKLLR----------TAEHF---------VFDEVHVYEGVLGSHLRMISD 215
Query: 424 RLCRLCS-HVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNP 482
R+ HV S S A+P + E E+IQ VL +
Sbjct: 216 RIREFGDYHVIAS------SATIGASP--YLFEELFGVKGEIIQGTNRRKGVAFHVLLDI 267
Query: 483 TSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVL 542
S R + +YL + +++ GL+ + F S+++ E
Sbjct: 268 GSLSRWTI-----------------------AAYLASFLMKKGLKVLVFVDSQQMAE--- 301
Query: 543 SYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHI 602
+L + I V+RAG E+R ++E DF G++ GV AT LELGID+G +
Sbjct: 302 -----VLGKIIKRFGFDIPVHRAGINPEERIKVEEDFKRGRIMGVVATPTLELGIDIGDL 356
Query: 603 DVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCH 662
D + P S Q+AGR+GRR + + E P+D Y+ + P++ FK +
Sbjct: 357 DAVILAENPPSYVKYLQRAGRAGRRNKIGYVFTLLGEDPIDAYYNRRPQEFFKRKLTPLP 416
Query: 663 IDAQNHKVLEQHLVCAALEHPLSLIYD-EKYFGSGLSSGITTLKNRG-YLSSDPSLDSSA 720
D N +V++ H +E I K + LSS +K G Y S P L
Sbjct: 417 FDTTNMEVIKAHAAALVVEKGKVRISSLPKLWVKSLSS--LPVKISGDYAYSTPELVKFV 474
Query: 721 KIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGH 780
K + SIR+ ++ D ++ + E E A + +Y AVY+
Sbjct: 475 K-------------STSIRST-GPMVKIYD--GDKKIGERELPVALYDLYPEAVYLISKR 518
Query: 781 TYLVKELNLSSKIALCQKA--DLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQA 838
TY V+ ++LS A ++ D Y+TK T + ++ SK+ L
Sbjct: 519 TYTVESVDLSHLTAKVRRISDDTTYYTKPLYSTHLL------SFKEIESKEVLGLPVKYG 572
Query: 839 -LACTVTTTWFGFYRLWRGSGIIFDTVELYLP-KYSYESQAVWIQVPQSVKAVVEQNFSF 896
+ ++ F Y + + P +SY+++ + I+ P + F
Sbjct: 573 EIEIMISVDGFVVYDIMSKKNKPREERYYKEPITFSYQTKGIIIKHPILAEF---SEFDA 629
Query: 897 RSGLHAASHALLHVVPIYVRCNFSDLAP-ECPNPHDSRYFPERILLYDRHPGGTGVSKQV 955
HA H L+ + + +DLA P+ H +++YD GG+GVSK +
Sbjct: 630 IEAFHATEHVLISAARVTAGASLTDLAGISYPSGH--------VVIYDAVIGGSGVSKLL 681
Query: 956 TD 957
D
Sbjct: 682 FD 683
>gi|159041868|ref|YP_001541120.1| DEAD/DEAH box helicase [Caldivirga maquilingensis IC-167]
gi|157920703|gb|ABW02130.1| DEAD/DEAH box helicase domain protein [Caldivirga maquilingensis
IC-167]
Length = 756
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 176/720 (24%), Positives = 304/720 (42%), Gaps = 95/720 (13%)
Query: 246 SALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVL-EALSHDLSSSAL 304
+ALK+ GIS+LY +Q ++ ++ G+N ++ + T +GK+ + +P++ AL+H +
Sbjct: 56 NALKAMGISRLYEYQYKAYLSITGGRNTIITSGTGTGKTEAFLIPIIARALNH---RREV 112
Query: 305 YMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNA-RLLITNPDMLH 363
++PTKALA+DQ A+ + + + YD D+ + R + D L++TNPDML+
Sbjct: 113 IIYPTKALARDQESRFRALAEPL--GLRVTTYDADSPSEVRRGVYDGEYSLVLTNPDMLN 170
Query: 364 MSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILR 423
+++ + F R ++ + +V IDE H Y G G H +++
Sbjct: 171 TAMI-HVPAFRRFMAT-------------------VDYVTIDEIHVYNGVLGSHMHYLIK 210
Query: 424 RLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDG--SPCAQKLFVLWN 481
R+ L V F ++AT NP ++ +NL E+ +G + + V+
Sbjct: 211 RIRHLNPGV-----KFAAASATIGNPTQY---FSNLVGSEVTHIEGIRGVRGELVHVMLR 262
Query: 482 PTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELV 541
P + EV+ L ++ G +CI F S + E++
Sbjct: 263 PIR-----------------------RGKLQEVTNLVKLCIELGRKCIVFADSHWMVEVI 299
Query: 542 LSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGH 601
+ L + V+RAG ++RRR+E F G+L V AT LELGID+G
Sbjct: 300 KRMINSM------GLGGKVAVHRAGLRPDERRRVEDSFKSGELQAVLATPTLELGIDIGD 353
Query: 602 IDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECC 661
D + P S Q+AGR GRR + + + V + P+ Y+ +PE+ + E
Sbjct: 354 ADFAVMATNPPSFIKYLQRAGRVGRRGQRAYVIQVLGDDPMSTYYANHPEEFYNRSPEPM 413
Query: 662 HIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAK 721
++ N +V +HL+ E + L + Y GL SG L N G +S +
Sbjct: 414 FMEPNNDEVAVRHLLAMIRESAVKLSELDDYL-RGLVSG---LVNEGLVS----IRGDRV 465
Query: 722 IFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHT 781
G + S + IR + VI + ++ E A +++ GA+YMH G T
Sbjct: 466 FLTEDGLRVINSFNV-IRG--NGDVVVIRRKGGGLIGYREMPMAIKELHPGAIYMHGGLT 522
Query: 782 YLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALAC 841
Y V EL++ + A+ D Y N I + +
Sbjct: 523 YRVLELDVRHRRAIVVPEDSSELITKALYNS------NPTVVNVIEESSYKGIPIRYAVL 576
Query: 842 TVTTTWFGFYRLWRGSGIIFDTVELYLP-KYSYESQAVWIQVPQSVKAVVEQNFSFRSG- 899
+ +G+ S L P +Y + ++ + + +P + VE G
Sbjct: 577 DIEEEVYGYVVKRMSSNETLGEYRLSEPIRYRFRTKGIILNMPPVNFSAVELRDLVEKGK 636
Query: 900 -LHAASHALLHVVPIYVRCNFSDLAP-ECPNPHDSRYFPERILLYDRHPGGTGVSKQVTD 957
HA H L+ + +D+ P H I++YD +PGG+GV+K V +
Sbjct: 637 AYHATEHVLISAGEVVANAAPTDMGGISYPTGH--------IVIYDSYPGGSGVTKLVME 688
>gi|66356746|ref|XP_625551.1| yprA. Lhr1/Ski2 family RNA SFII helicase [Cryptosporidium parvum
Iowa II]
gi|46226611|gb|EAK87599.1| yprA. Lhr1/Ski2 family RNA SFII helicase [Cryptosporidium parvum
Iowa II]
Length = 851
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 141/458 (30%), Positives = 220/458 (48%), Gaps = 65/458 (14%)
Query: 255 KLYSHQAESIMASLAGK-NVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALA 313
+ Y+HQ+++I A L K NV++ T TSSGKS+CY LP ++ + + AL +FPTKAL+
Sbjct: 265 RFYNHQSDAIKAILRDKKNVIITTSTSSGKSMCYLLPCIQFAIQNPKNLALLIFPTKALS 324
Query: 314 QDQLRALLAMTKAFDASI-----DIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILP 368
+DQ + + F + DGDT R + + +++TN D +H
Sbjct: 325 EDQFMKITQILSFFHPEPPTILPKVNKLDGDTNMNQRREILLKSNIILTNIDFIHW---- 380
Query: 369 YHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCR- 427
N+ L++ +I+ ++ +VIDEAH Y G FG +T+ IL+RL R
Sbjct: 381 ----------NIELLSC--------MIYNRLKLLVIDEAHIYTGHFGINTSYILKRLHRG 422
Query: 428 ----------LCSHVYGSDPSFVFSTATSANPREHCM-----ELANLSTLELIQNDGSPC 472
+ S Y ++ TAT NP EH E + + + LI ND S
Sbjct: 423 ILYYKQKNNYIDSETY---TQYIVCTATINNPIEHFKNLIGSEFKDFNDIALIDNDSSSK 479
Query: 473 AQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAAN-KTSSPISEVSYLFAEMVQHGLRCIAF 531
+ ++W+ C + ++ D+T+N + K + E + E + I F
Sbjct: 480 GESSILIWD---CNKYIIK------DNTKNYSQIKKNKSYKECINMLIEFYYLNRKLILF 530
Query: 532 CRSRKLCE-----LVLSYTREILEETAPHLVDS-ICVYRAGYVAEDRRRIERDFFGGKLC 585
C SRKL E L+++ + L DS I +YR G +RR++E F GK+
Sbjct: 531 CPSRKLVENIKRDLLMALKKINLHNDHQFNFDSDIQIYRGGISQTERRKLESLIFNGKVK 590
Query: 586 GVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRER-PSLAVYVAFE-GPLD 643
V +T ALELGIDV D + G+PGSI L QQ GR GR + S+ V + E +D
Sbjct: 591 IVISTIALELGIDVKCFDSVIVFGYPGSINRLTQQFGRCGRDHKTKSIKVLLLNENNEID 650
Query: 644 QYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALE 681
Y + ++L + C I+ +N +L HL+C +E
Sbjct: 651 NYISNHGDELLSKQFDSCVINLKNPYLLILHLICLTVE 688
>gi|374326063|ref|YP_005084263.1| ATP-dependent helicase [Pyrobaculum sp. 1860]
gi|356641332|gb|AET32011.1| ATP-dependent helicase [Pyrobaculum sp. 1860]
Length = 745
Score = 190 bits (482), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 192/758 (25%), Positives = 326/758 (43%), Gaps = 112/758 (14%)
Query: 214 IGSQG-QMVHVE-DISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGK 271
+G G ++V+++ D + V + D S GIS LY +Q +++ + +G+
Sbjct: 8 LGDPGREVVYIKTDDAETPEVCCRVGDVARREVADVFTSLGISSLYRYQYDAVQSIRSGR 67
Query: 272 NVVVATMTSSGKSLCYNLPVLEALSHDLSSS-ALYMFPTKALAQDQLRALLAMTKAFDAS 330
+ VV T GK+ + +P+LEA L AL ++PTKALA+DQL L
Sbjct: 68 DTVVVAGTGMGKTEAFLIPILEASMEALGGPVALVLYPTKALARDQLARLRRYGDRL--G 125
Query: 331 IDIGVYDGDTTQKDRMWLRD-NARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVT 389
+ + VYDGDT ++R L + ++I+NPDM+ +++ + +F +L
Sbjct: 126 VRVMVYDGDTPPRERRLLYEMPPHVVISNPDMVSQALM-HVAKFREMLRR---------- 174
Query: 390 TEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANP 449
+R+VV+D+ H Y G FG H +LRR+ R F+ ++AT NP
Sbjct: 175 ---------VRYVVLDDFHVYTGVFGSHMYYLLRRVRRFVRP------VFIATSATVGNP 219
Query: 450 REHCMELANLSTLELIQNDGSPCAQKLFVLWNP---TSCLRSVLNKSQTDMDDTRNAANK 506
E L + + ++ V+W P L VL A +
Sbjct: 220 AEFAQALFD--------------SDRVNVVWGPLGRRGRLVQVL------------ARPR 253
Query: 507 TSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAG 566
S +E + L A ++ G++C+ F S + E++ + D + V+RAG
Sbjct: 254 FRSKWAEAARLAALCIEQGMKCLVFTDSHRYSEIIYRALK------ISGWGDRVAVHRAG 307
Query: 567 YVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGR 626
E+R+ +E F G++ V +T LELGID+G +D + P S + Q+ GR GR
Sbjct: 308 LDPEERKAVEEAFKRGEVDVVISTPTLELGIDIGDVDAAVLASIPPSYSRYLQRIGRVGR 367
Query: 627 RERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSL 686
R + V + P+ QY+ YP + F E + +N V H++ AA + PL
Sbjct: 368 RGQTGYVVQILGNDPISQYYRNYPHEFFSRFPEPLGFEKENEDVATLHVLAAAADAPLR- 426
Query: 687 IYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERY 746
E+ L+S L R L ++ +L + + + +S+R S
Sbjct: 427 ---ER----DLTSFERRLAER--LEAEGALTRVGRFYRITPRGRERLSMLSLRG--SPHV 475
Query: 747 EVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTK 806
I VL E E A ++++ A+YMH G TY+ + L+L ++A+ + AD +
Sbjct: 476 VKIKTGDGRVLGERELPLALYELHPEAIYMHGGRTYVSRSLDLERRVAVVEPADAEDLM- 534
Query: 807 TRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVEL 866
T+ D+ + + + Q + T +G Y L R T E
Sbjct: 535 TQALEDM-----EPEIVEVLREGVVEGVPYQYGRLRIKMTVYG-YALKR------FTTEE 582
Query: 867 YLPKYS-------YESQAVWIQVPQSVKAVVEQNFSFRS---GLHAASHALLHVVPIYVR 916
L +YS +E++ +P V+ + + G HAA H L+ I +
Sbjct: 583 TLGEYSIDPLTYEFETRGAVFYMPH-VRFSANDALDWEARAKGYHAAEHVLISATEIALG 641
Query: 917 CNFSDLAPECPNPHDSRYFPER-ILLYDRHPGGTGVSK 953
+DL +P+ +++YD H GG G +K
Sbjct: 642 AAKTDLG--------GISYPDGVVVIYDSHVGGNGTTK 671
>gi|171185909|ref|YP_001794828.1| DEAD/DEAH box helicase [Pyrobaculum neutrophilum V24Sta]
gi|170935121|gb|ACB40382.1| DEAD/DEAH box helicase domain protein [Pyrobaculum neutrophilum
V24Sta]
Length = 744
Score = 189 bits (479), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 185/722 (25%), Positives = 307/722 (42%), Gaps = 118/722 (16%)
Query: 252 GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLE-ALSHDLSSSALYMFPTK 310
GIS+L+ HQ ++I + G++ V+ T GK+ + P+LE AL +AL ++PTK
Sbjct: 48 GISQLFRHQYDAIQSIRGGRDTVIVAGTGMGKTEAFLAPLLESALESPRGPTALVLYPTK 107
Query: 311 ALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNA-RLLITNPDMLHMSILPY 369
ALA+DQL + + VYDGDT Q++R + + ++I+NPDM+ ++++ +
Sbjct: 108 ALARDQLSRFRRFGDR--VGVRVMVYDGDTPQRERRIMYETPPHIIISNPDMVSIALM-H 164
Query: 370 HGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLC 429
+F ++ LR +VV+D+ H Y G FG H +LRRL R
Sbjct: 165 VAKFRELVKRLR-------------------YVVLDDFHVYSGVFGSHMYYLLRRLRRF- 204
Query: 430 SHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSV 489
+ P F+ ++AT NP E L + + ++ V+W P R
Sbjct: 205 -----TRPLFIATSATVGNPAEFAQTLFD--------------SDRINVVWGPLG-RRGR 244
Query: 490 LNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREIL 549
L ++ K S +E + L + ++ GL+CI F S + E++ +
Sbjct: 245 LIQALV--------RPKFRSKWAEAARLASLCIEGGLKCIVFTDSHRYSEVIFRALK--- 293
Query: 550 EETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLG 609
D + ++RAG E+RR +E F G + V +T LELG+D+G +D +
Sbjct: 294 ---MGGRGDRVALHRAGLDPEERRGVEEAFKRGDVNVVISTPTLELGVDIGDVDAAVLAS 350
Query: 610 FPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHK 669
P S Q+ GR GRR + + + P+ QY+ YP + F E + +N
Sbjct: 351 IPPSYNRYLQRVGRVGRRGQTGYIIQILGNDPISQYYRNYPHEFFSRSPEPLGFERENED 410
Query: 670 VLEQHLVCAALEHPLSL--------IYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAK 721
V HL+ AA + PL L E+ G GL + + YL P
Sbjct: 411 VAALHLLAAASDMPLRLGELGHFEQRLAEELLGRGLLRRVGS-----YLRITPG------ 459
Query: 722 IFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHT 781
G E + + +S+R S I V+ E E A ++++ A+YMH G T
Sbjct: 460 -----GREALSA--LSLRG--SPHVVKIKTGDGRVIGERELPLALYELHPEAIYMHGGRT 510
Query: 782 YLVKELNLSSKIALCQKADLKYFTKTR------DYTDIHVSGGNNAYATKISKDQLTKTT 835
Y+ K L+LS + A+ + D + + +I+ G + + ++ T
Sbjct: 511 YVSKSLDLSRRTAVVEPVDAEDLVTQALEDMEPNVVEIYEEGAVEGVPYQFGRLKIKITV 570
Query: 836 -AQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVEQNF 894
AL T G Y + S Y +E++ +P V+ +
Sbjct: 571 YGYALKRFTTEETLGEYNIEPLS-------------YEFETKGAVFYMPH-VRFSSDDTI 616
Query: 895 SFRS---GLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGV 951
+ + G HA H L+ I V + +DL Y I++YD H GG G
Sbjct: 617 DWEARAKGYHATEHVLISATEIAVGASKTDLG-------GISYPDGVIVIYDSHVGGNGT 669
Query: 952 SK 953
++
Sbjct: 670 TR 671
>gi|443924501|gb|ELU43505.1| DEAD/H helicase [Rhizoctonia solani AG-1 IA]
Length = 547
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 139/404 (34%), Positives = 207/404 (51%), Gaps = 59/404 (14%)
Query: 570 EDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRER 629
+DRR+IE + F G L G+ ATNALELG+D+G +D + LGFP +ASL QQ GR+GRR R
Sbjct: 87 QDRRKIEHEAFSGNLLGLVATNALELGVDIGTLDAVIVLGFPFGLASLRQQMGRAGRRAR 146
Query: 630 PSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYD 689
+L V VA +DQ+++ +P++LF S ++ E HL CAA E P+ ++D
Sbjct: 147 DALTVLVADSRAIDQHYVNHPDELF-SDVDMVQFSPWRSPN-ESHLQCAAHEMPVHSLHD 204
Query: 690 EKYFGSGLSSGI-TTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEV 748
+ YFG L+ ++LK G D ++ K + PS ISIR IE E+Y V
Sbjct: 205 QSYFGPSLADLCNSSLKRDG----DGWYHTNPKFLPF------PSKYISIRGIEEEKYVV 254
Query: 749 IDMQSN-----EVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKY 803
ID + ++LEEIE S+A F+ + H K A ++D+ +
Sbjct: 255 IDTTLHSEGQVKILEEIEVSRAIFEA--------ECH---------DEKQARIFRSDVNW 297
Query: 804 FTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQAL--ACTVTTTWFGFYRLWRGSGIIF 861
T+ RD+TDI+ + A K K+T +A + V T FGF +L RG I+
Sbjct: 298 TTRPRDFTDINAIQTHRIRAVK-------KSTIRAFYGSVQVFTKVFGFLKL-RGQEIL- 348
Query: 862 DTVELYLPKYSYESQAVWIQVPQSV-KAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFS 920
D V++ P Y + +W+ VP+ + + + ++ S +HAASHA L+ + S
Sbjct: 349 DIVDIQTPPYERTTTGMWMDVPKFILQLLKDKGISPAEAIHAASHAFLNRTHLS-----S 403
Query: 921 DLAPECPNP-------HDSRYFPERILLYDRHPGGTGVSKQVTD 957
DL EC P SR P R++ YD G+GV + D
Sbjct: 404 DLKTECKVPSKEYAQRDSSRKRPARLIWYDAAGDGSGVCAKAFD 447
>gi|15896989|ref|NP_341594.1| ATP-dependent helicase [Sulfolobus solfataricus P2]
gi|284173858|ref|ZP_06387827.1| ATP-dependent helicase [Sulfolobus solfataricus 98/2]
gi|384433489|ref|YP_005642847.1| DEAD/DEAH box helicase [Sulfolobus solfataricus 98/2]
gi|13813146|gb|AAK40384.1| ATP-dependent helicase [Sulfolobus solfataricus P2]
gi|261601643|gb|ACX91246.1| DEAD/DEAH box helicase domain protein [Sulfolobus solfataricus
98/2]
Length = 739
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 181/726 (24%), Positives = 330/726 (45%), Gaps = 114/726 (15%)
Query: 242 DNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLE-ALSHDLS 300
D K ++ GI +LY +Q ++ +NV++ + T +GK+ + +P+L+ AL + S
Sbjct: 42 DKLKKSIIEYGIERLYKYQYDAYRKIKNKENVMIISGTGTGKTEAFLIPILDLALKGERS 101
Query: 301 SSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWL-RDNARLLITNP 359
+ ++PTKALA+DQL + + + + +++G++DGDT +K+R L R+ +LITNP
Sbjct: 102 ---VLVYPTKALARDQLTRVYKLAR--ELGLNVGIFDGDTPEKERERLYRNPPHILITNP 156
Query: 360 DMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTA 419
DM+H+ + + + R L+ T + IF DE H Y+G G H
Sbjct: 157 DMIHLGLA--------LSTRFRF----LLRTADHFIF--------DEVHVYEGVLGAHIR 196
Query: 420 LILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVL 479
+ R+ + +D V S+AT + EL + E+I+ +
Sbjct: 197 NLADRIKE-----FKNDIHIVASSATVGATKYLFEELFGVEG-EIIEG----------IR 240
Query: 480 WNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCE 539
+ S++ D+ N++ T + +YL A +V++GL+ + F S+++ E
Sbjct: 241 RRKGIAIHSII--------DSGNSSRWTLA-----AYLAAVLVKNGLKVLVFTDSQQMAE 287
Query: 540 LVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDV 599
LV + A ++ V+RAG +AE+R ++E G+L GV AT LELGID+
Sbjct: 288 LV--------AKIADRFRVNLEVHRAGLIAEERIKVEEKLRNGELDGVVATPTLELGIDI 339
Query: 600 GHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIE 659
G ID + P S Q+AGR+GRR L + + P+D Y++++PE+ F I+
Sbjct: 340 GTIDAVIMAENPPSYTKYVQRAGRAGRRNNAGLVFTILGDDPIDSYYLRHPEEFFTRKIQ 399
Query: 660 CCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSS 719
D N +V++ H +L Y + + L++ + L + Y + +S
Sbjct: 400 ALTFDPTNIEVIKIH----------ALAYLAEKYRVKLNN-LPPLWKKAY--EILATESR 446
Query: 720 AKIF-EYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQ 778
AKI Y+ ++ ++ S V + + + E E A +Y AVY+
Sbjct: 447 AKIVGSYVLATPETKKYVATTSLRSVGPIVRIYEDKKKIGERELPAALHDLYPNAVYLIS 506
Query: 779 GHTYLVKELNLSSKIALCQK--ADLKYFTK---TRDYTDIHVSGGNNAYATKISKDQLTK 833
TY+++E ++ IA +K ++L Y+TK + D + + Y K+ +
Sbjct: 507 KKTYIIEEFDIDRLIAKVRKVNSELSYYTKPLYSMDLLEFNKKDEREVYGEKVEYGDMK- 565
Query: 834 TTAQALACTVTTTWFGFYRLW--RGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVE 891
+ + Y ++ RG F + ++Y ++ + I P +
Sbjct: 566 -------LVMRVEGYVTYDVYSKRGKNEYFYENPI---SFTYNTKGLLIYHP------LI 609
Query: 892 QNFSFRSGL---HAASHALLHVVPIYVRCNFSDLAP-ECPNPHDSRYFPERILLYDRHPG 947
+F+ + HA H L+ + + +DL P+ H +++YD G
Sbjct: 610 DDFTLIDHMETYHATEHVLISAARVAAGASLTDLGGISYPSGH--------VVIYDSSIG 661
Query: 948 GTGVSK 953
G+GVSK
Sbjct: 662 GSGVSK 667
>gi|343524074|ref|ZP_08761034.1| hypothetical protein HMPREF9058_0636 [Actinomyces sp. oral taxon
175 str. F0384]
gi|343399055|gb|EGV11580.1| hypothetical protein HMPREF9058_0636 [Actinomyces sp. oral taxon
175 str. F0384]
Length = 977
Score = 187 bits (474), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 114/335 (34%), Positives = 170/335 (50%), Gaps = 10/335 (2%)
Query: 482 PTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELV 541
P + + ++ D D + S + E + L +++ G R + F RSR+ E+V
Sbjct: 370 PVTSGATPPGSAEPDSGDPGEDPSARRSAVVEAAELLVDLLSVGARALVFVRSRRSAEVV 429
Query: 542 LSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGH 601
R L + P LV ++ YR GY+ E+RR +E D G+L +A TNALELGIDV
Sbjct: 430 AERARHTLGLSLPELVGTVSAYRGGYLPEERRALEADLRSGRLRALATTNALELGIDVTG 489
Query: 602 IDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECC 661
+D L G+PG+ SL QQAGR+GR LAV +A + PLD Y + +PE +F +P E
Sbjct: 490 LDAVLIAGWPGTRVSLGQQAGRAGRAGTRGLAVLIASDNPLDAYLVHHPEAVFAAP-EAT 548
Query: 662 HIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAK 721
D N VL HL AA E PL D FG + + L+ RG L P+
Sbjct: 549 VFDPANPYVLAPHLCAAASEAPLR-ASDLALFGLPDDALLRELEGRGALRRRPT-----G 602
Query: 722 IFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQGHT 781
F + P S+R V++ + ++ ++ + A V+EGAVY+HQG
Sbjct: 603 WFWNVNLPGRPQDLTSLRGDGPPEVPVVEADTGVIIGTVDGAAADSTVHEGAVYVHQGRV 662
Query: 782 YLVKELNLSSKIALC-QKADLKYFTKTRDYTDIHV 815
Y+V+E L+ +AL QKA + Y T+ R + + +
Sbjct: 663 YVVEE--LADDVALVRQKAAVGYRTRARSRSSVRI 695
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 148/298 (49%), Gaps = 49/298 (16%)
Query: 215 GSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVV 274
G G++VH++ AR + PD + +A + G+ + ++HQ + ++ AG++ V
Sbjct: 18 GRDGRLVHLQRTPARPGHHADWPDWADPDLVAAYRRLGVERPWTHQVAAAHSAHAGRHTV 77
Query: 275 VATMTSSGKSLCYNLPVLEAL-------------SHDLSSSALYMFPTKALAQDQLRALL 321
+AT T SGKSL LP L + +H + LY+ PTKALA DQ AL
Sbjct: 78 LATGTGSGKSLAAWLPALSDVLAAQSPGADSRISAHTRRPTTLYLSPTKALAADQAAALA 137
Query: 322 AMTKAFDA-------------SIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILP 368
+ +A ++ G DGDT +R W+R +A +++TNPD LH S+LP
Sbjct: 138 RLIGELEAVQREAGTPAGSLRTVRAGTCDGDTPLPERDWVRAHADVVLTNPDFLHFSLLP 197
Query: 369 YHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRL 428
H ++SR+L L R++VIDE HAY+G G H AL+LRRL RL
Sbjct: 198 GHERWSRLLRGL-------------------RYIVIDECHAYRGILGAHVALVLRRLLRL 238
Query: 429 CSHVY--GSDPSFVFSTATSANPREHCMELANLSTLELIQ--NDGSPCAQKLFVLWNP 482
+ + G P + ++AT+A P L + +++ +D +P ++ LW P
Sbjct: 239 VARLRPRGPQPVVLCASATAAEPALTAARLIGVEPDDVVAVTDDAAPAGERTLALWQP 296
Score = 44.3 bits (103), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 2/113 (1%)
Query: 843 VTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSV-KAVVEQNFSFRSGLH 901
VT+ G+ R+ G + L + ++ + AVW +PQ V +A + LH
Sbjct: 783 VTSQVTGYQRMALPGGEVVSQHSLEMGEHVLPTAAVWWTIPQEVCEAAGLEPTDLPGALH 842
Query: 902 AASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGTGVSKQ 954
AA HA + ++P+ C+ D+ H P + ++D H GG G +++
Sbjct: 843 AAEHASIGMLPLLATCDRWDIGGLSTAAHPQTGAPT-VFVHDGHAGGAGFAER 894
>gi|296108935|ref|YP_003615884.1| DEAD/DEAH box helicase domain protein [methanocaldococcus infernus
ME]
gi|295433749|gb|ADG12920.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus infernus
ME]
Length = 857
Score = 186 bits (472), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 132/473 (27%), Positives = 220/473 (46%), Gaps = 68/473 (14%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+++ ++I R+ V E + +AL KLY HQ E++ A G+++++ T T
Sbjct: 9 IIYSKEIPKREGVFGEF--NFKNKEVNALLEKLNFKLYKHQVEALKALYEGRDILLTTPT 66
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIG----V 335
+SGKS + L +L+ + L +FPT+AL +Q + + F I+ G V
Sbjct: 67 ASGKSEVFRLSILDNFLSEREDKYLLIFPTRALIYNQYEKFKYIIEKFKELINEGLKIEV 126
Query: 336 YDGDTTQKDRM-WLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYL 394
GDT+ R+ L + +LI PDMLH IL + ++ +L NLR
Sbjct: 127 LTGDTSYSKRLKILEEKPEILIVTPDMLHFQILRFRERYRWLLDNLR------------- 173
Query: 395 IFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCM 454
++V+DE H Y G FG + + + +RL L ++P + +AT +P+
Sbjct: 174 ------YLVVDEIHEYNGVFGANVSYVFKRLLSL------TEPQIIALSATLKDPKSFTK 221
Query: 455 ELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEV 514
L E+I +P +K F+++ + D ++ K +
Sbjct: 222 TLFE-RDFEVISKAYNPSPKKYFLVFYSENI-------------DEKDLLGKI------L 261
Query: 515 SYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRR 574
SYL + ++ + F SR+ E EIL+ + I YR + EDRR
Sbjct: 262 SYL----ISKNIKTLTFFDSRRKTE-------EILKFLLSRGLKKIITYRGTFTHEDRRE 310
Query: 575 IERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGS-IASLWQQAGRSGRRERPSLA 633
IER F G+ + TNALELGID+G +D ++ G P + I SL Q+ GR+GRR+R ++
Sbjct: 311 IERKFKEGEYLVLLTTNALELGIDIGDVDTVINYGIPSTGIFSLIQRFGRAGRRDREAIN 370
Query: 634 VYVAFEGPLDQYFM----KYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEH 682
+ + LD Y+ + EK+ K IE I +N + ++H++ EH
Sbjct: 371 AIILRKDGLDIYYKENVEELSEKVVKGIIEDLPITKENRLIAKKHILLMIKEH 423
>gi|227828354|ref|YP_002830134.1| DEAD/DEAH box helicase [Sulfolobus islandicus M.14.25]
gi|227460150|gb|ACP38836.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
M.14.25]
Length = 741
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 188/738 (25%), Positives = 322/738 (43%), Gaps = 133/738 (18%)
Query: 241 LDNT-KSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLE-ALSHD 298
+DN K + GI +LY +Q E+ +NV++ + T +GK+ + +P+L+ AL +
Sbjct: 40 IDNKLKKTITEYGIERLYKYQYEAYRKIKNKENVMIVSGTGTGKTEAFLIPILDLALRGE 99
Query: 299 LSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWL-RDNARLLIT 357
S + ++PTKALA+DQL + + A + ++IG++DGDT +K+R L R+ +LIT
Sbjct: 100 RS---VLIYPTKALARDQLTRVYKL--AGELGLNIGIFDGDTPEKERERLYRNPPHILIT 154
Query: 358 NPDMLHMSILPYHGQFSRILSN-LRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGC 416
NPDM+H+ + LSN R L+ T + IF DE H Y+G G
Sbjct: 155 NPDMIHLGL---------ALSNRFRF----LLRTADHFIF--------DEVHVYEGVLGA 193
Query: 417 HTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKL 476
H + R+ + +D V S+AT + EL + E+I+ L
Sbjct: 194 HIRNLADRIKE-----FKNDIHIVASSATIGATKYLFGELFGVEG-EIIEGTRRRKGIAL 247
Query: 477 FVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRK 536
L + + R L +YL A +V+ GL+ + F S++
Sbjct: 248 HGLIDSGNSSRWTL-----------------------AAYLAAVLVKKGLKVLVFTDSQQ 284
Query: 537 LCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELG 596
+ ELV + A ++ V+RAG AE+R ++E G+L GV AT LELG
Sbjct: 285 MTELV--------AKIADRFRVNLEVHRAGLNAEERIKVEEKLRNGELDGVVATPTLELG 336
Query: 597 IDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKS 656
ID+G ID + P S Q+AGR+GRR L + + P+D Y++++PE+ F
Sbjct: 337 IDIGSIDAVIMAENPPSYTKYIQRAGRAGRRNNAGLIFTILGDDPIDSYYLRHPEEFFNR 396
Query: 657 PIECCHIDAQNHKVLEQH-LVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPS 715
I+ D N +V++ H L A ++ + L + L + Y +
Sbjct: 397 KIQPLTFDPTNMEVIKIHALAYLAEKYRIRL------------DNLPPLWKKAY--EMLN 442
Query: 716 LDSSAKIF-----------EYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESK 764
++ AKI +Y+ + S IR E ++ + E E
Sbjct: 443 IEGKAKIIGSNVLAVSETKKYLASTSLRSVGPIIRIYEDKK----------KIGERELPA 492
Query: 765 AFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQK--ADLKYFTK---TRDYTDIHVSGGN 819
A +Y AVY+ TY+++EL++ IA +K ++L Y+TK + D + +
Sbjct: 493 ALHDLYPNAVYLISKKTYIIEELDIGRLIAKARKVNSELSYYTKPLYSMDLLEFNKKDER 552
Query: 820 NAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVW 879
Y K+ ++ + L + Y +G G + ++Y ++ +
Sbjct: 553 EVYGEKVEYGEM-----KLLMRVEGYVTYDVY--LKGKGGRNEYFYENPISFTYNTKGLL 605
Query: 880 IQVPQSVKAVVEQNFSF---RSGLHAASHALLHVVPIYVRCNFSDLAP-ECPNPHDSRYF 935
I P + +F+ HA H L+ + + +DL P+ H
Sbjct: 606 IYHP------LIDDFTLIDHMEAYHATEHVLISAARVAAGASLTDLGGISYPSGH----- 654
Query: 936 PERILLYDRHPGGTGVSK 953
+++YD GG+G++K
Sbjct: 655 ---VVIYDSSIGGSGIAK 669
>gi|297725855|ref|NP_001175291.1| Os07g0606500 [Oryza sativa Japonica Group]
gi|255677959|dbj|BAH94019.1| Os07g0606500, partial [Oryza sativa Japonica Group]
Length = 120
Score = 183 bits (465), Expect = 4e-43, Method: Composition-based stats.
Identities = 84/129 (65%), Positives = 97/129 (75%), Gaps = 19/129 (14%)
Query: 326 AFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAF 385
A ID+ +YDGDT ++DR W+RDNARLLITNPDMLHMSILP HGQF RILSNLR
Sbjct: 3 ALHTDIDVNIYDGDTPREDRTWIRDNARLLITNPDMLHMSILPCHGQFQRILSNLR---- 58
Query: 386 SLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTAT 445
++VIDEAH+YKGAFGCHTALILRRL R+CS++YGS P+F+F TAT
Sbjct: 59 ---------------YIVIDEAHSYKGAFGCHTALILRRLKRICSNIYGSHPTFIFCTAT 103
Query: 446 SANPREHCM 454
SANPREH M
Sbjct: 104 SANPREHVM 112
>gi|229585584|ref|YP_002844086.1| DEAD/DEAH box helicase [Sulfolobus islandicus M.16.27]
gi|228020634|gb|ACP56041.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
M.16.27]
Length = 741
Score = 183 bits (464), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 187/731 (25%), Positives = 323/731 (44%), Gaps = 119/731 (16%)
Query: 241 LDNT-KSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLE-ALSHD 298
+DN K + GI +LY +Q E+ +NV++ + T +GK+ + +P+L+ AL +
Sbjct: 40 IDNKLKKTITEYGIERLYKYQYEAYRKIKNKENVMIVSGTGTGKTEAFLIPILDLALRGE 99
Query: 299 LSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWL-RDNARLLIT 357
S + ++PTKALA+DQL + + A + ++IG++DGDT +K+R L R+ +LIT
Sbjct: 100 RS---VLIYPTKALARDQLTRVYKL--AGELGLNIGIFDGDTPEKERERLYRNPPHILIT 154
Query: 358 NPDMLHMSILPYHGQFSRILSN-LRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGC 416
NPDM+H+ + LSN R L+ T + IF DE H Y+G G
Sbjct: 155 NPDMIHLGL---------ALSNRFRF----LLRTADHFIF--------DEVHVYEGVLGA 193
Query: 417 HTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKL 476
H + R+ + +D V S+AT + EL + E+I+ L
Sbjct: 194 HIRNLADRIKE-----FKNDIHIVASSATIGATKYLFGELFGVEG-EIIEGTRRRKGIAL 247
Query: 477 FVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRK 536
L + + R L +YL A +V+ GL+ + F S++
Sbjct: 248 HGLIDSGNSSRWTL-----------------------AAYLAAVLVKKGLKVLVFTDSQQ 284
Query: 537 LCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELG 596
+ ELV + A ++ V+RAG AE+R ++E G+L GV AT LELG
Sbjct: 285 MTELV--------AKIADRFRVNLEVHRAGLNAEERIKVEEKLRNGELDGVVATPTLELG 336
Query: 597 IDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKS 656
ID+G ID + P S Q+AGR+GRR L + + P+D Y++++PE+ F
Sbjct: 337 IDIGSIDAVIIAENPPSYTKYIQRAGRAGRRNNAGLIFTILGDDPIDSYYLRHPEEFFNR 396
Query: 657 PIECCHIDAQNHKVLEQH-LVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPS 715
I+ D N +V++ H L A ++ + L + L + Y +
Sbjct: 397 KIQPLTFDPTNMEVIKIHALAYLAEKYRIRL------------DNLPPLWKKAY--EMLN 442
Query: 716 LDSSAKIFE----YIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYE 771
++ AKI + K + S+R++ V + + + E E A +Y
Sbjct: 443 IEGKAKIIGSNVLAVSETKKYLASTSLRSVGP---IVRIYEDKKKIGERELPAALHDLYP 499
Query: 772 GAVYMHQGHTYLVKELNLSSKIALCQK--ADLKYFTK---TRDYTDIHVSGGNNAYATKI 826
AVY+ TY+++EL++ IA +K ++L Y+TK + D + + Y K+
Sbjct: 500 NAVYLISKKTYIIEELDIGRLIAKARKVNSELSYYTKPLYSMDLLEFNKKDEREVYGEKV 559
Query: 827 SKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSV 886
++ + L + Y +G G + ++Y ++ + I P
Sbjct: 560 EYGEM-----KLLMRVEGYVTYDVY--LKGKGGRNEYFYENPISFTYNTKGLLIYHP--- 609
Query: 887 KAVVEQNFSF---RSGLHAASHALLHVVPIYVRCNFSDLAP-ECPNPHDSRYFPERILLY 942
+ +F+ HA H L+ + + +DL P+ H +++Y
Sbjct: 610 ---LIDDFTLIDHMEAYHATEHVLISAARVAAGASLTDLGGISYPSGH--------VVIY 658
Query: 943 DRHPGGTGVSK 953
D GG+G++K
Sbjct: 659 DSSIGGSGIAK 669
>gi|390938486|ref|YP_006402224.1| DEAD/DEAH box helicase [Desulfurococcus fermentans DSM 16532]
gi|390191593|gb|AFL66649.1| DEAD/DEAH box helicase domain protein [Desulfurococcus fermentans
DSM 16532]
Length = 759
Score = 183 bits (464), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 195/724 (26%), Positives = 310/724 (42%), Gaps = 112/724 (15%)
Query: 248 LKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSS--ALY 305
L GI +LY Q E+ L +N V++ T +GK+ + LP+L + + S+ A+
Sbjct: 55 LHRRGIRRLYRFQYEAYRHILNRENTVISAGTGTGKTEAFLLPILREIYYVRKSNPRAMI 114
Query: 306 MFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDN-ARLLITNPDMLHM 364
++PTKALA+DQL T I G+YDGDT ++ R + N ++I+NPDMLH+
Sbjct: 115 LYPTKALARDQLNRFTDYT--VYPIIGFGIYDGDTPRRQREKIGLNPPSIIISNPDMLHI 172
Query: 365 SILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRR 424
++ Y + N F+V DE H Y+G G H ++ R
Sbjct: 173 GLV-YSSYIRSFVENS-------------------EFMVFDELHVYEGVLGSHIHHLVER 212
Query: 425 LCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTS 484
+ R P F+ S+AT NP+E EL E+++ G + + T
Sbjct: 213 IKRTSRE----KPVFIGSSATIGNPKEFAEELFG---EEVVEVKGEAFRKGMV-----TH 260
Query: 485 CLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSY 544
L ++ S S V+YL + + GL+ I F S++L EL+
Sbjct: 261 VL----------------VSSGYLSRWSVVAYLCYILSRRGLKYIVFVDSQQLAELL--- 301
Query: 545 TREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDV 604
TR + +T ++ +I V+RAG A+ RR IE G + GV AT+ LELGID+G +D
Sbjct: 302 TR--ILKTKYNV--NIMVHRAGLPADVRRDIEVKLRNGLIDGVVATSTLELGIDIGALDA 357
Query: 605 TLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHID 664
T+ + P S + Q R R V + P+D Y+ + PE+ F I I+
Sbjct: 358 TV-MAMPPPSYSKYLQRAGRAGRRRKGYVFTVLGDDPIDVYYARSPERFFTQSIPPSVIE 416
Query: 665 AQNHKVLEQHLVCAALEHPLSLIYD-----EKYFGSGLSSGITTLKNRGYLSSDPSLDSS 719
N +V + HLV L+ + I ++ GI K Y+ P +S
Sbjct: 417 PSNEEVAKTHLVAYLLQSWRARIDSIPGEWRNIIDELVAEGIVK-KTGEYIRPIP---AS 472
Query: 720 AKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQG 779
A+ ++ S +R + E++D S + L E A ++Y GA+Y++ G
Sbjct: 473 AR--------RLLSTQDGLRGM-GPIVEIVDSISGDTLATRELPVALLELYPGAIYLYMG 523
Query: 780 HTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQAL 839
Y+V+ LNL K AL ++ TR + V + K S+ + L
Sbjct: 524 EPYIVESLNLVEKKALVKRPGENITVYTRPLYTVDVVNYDVLMERKSSRGIMASYAKVVL 583
Query: 840 ACTVTTT-----WFGFYRLWRGSGIIFDTVELYLP-KYSYESQAVWIQVPQ----SVKAV 889
+V + G R T++L P KY Y ++A+ ++ P +K
Sbjct: 584 ELSVNGVVVKDMYTGETRF---------TMDLEKPIKYQYSTRALLLKYPVYEELGIKGC 634
Query: 890 VEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGT 949
E HA HAL+ + +DL Y I++YD GG+
Sbjct: 635 AE-------AFHAIEHALISAARVTCGSGLTDLG-------GISYPSGDIVIYDSAIGGS 680
Query: 950 GVSK 953
G+SK
Sbjct: 681 GLSK 684
>gi|385774035|ref|YP_005646602.1| DEAD/DEAH box helicase [Sulfolobus islandicus HVE10/4]
gi|385776681|ref|YP_005649249.1| DEAD/DEAH box helicase [Sulfolobus islandicus REY15A]
gi|323475429|gb|ADX86035.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
REY15A]
gi|323478150|gb|ADX83388.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
HVE10/4]
Length = 741
Score = 183 bits (464), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 187/731 (25%), Positives = 322/731 (44%), Gaps = 119/731 (16%)
Query: 241 LDNT-KSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLE-ALSHD 298
+DN K + GI +LY +Q E+ +NV++ + T +GK+ + +P+L+ AL +
Sbjct: 40 IDNKLKKTITEYGIERLYKYQYEAYRKIKNKENVMIVSGTGTGKTEAFLIPILDLALRGE 99
Query: 299 LSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWL-RDNARLLIT 357
S + ++PTKALA+DQL + + A + ++IG++DGDT +K+R L R+ +LIT
Sbjct: 100 RS---VLIYPTKALARDQLTRVYKL--AGELGLNIGIFDGDTPEKERERLYRNPPHILIT 154
Query: 358 NPDMLHMSILPYHGQFSRILSN-LRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGC 416
NPDM+H+ + LSN R L+ T + IF DE H Y+G G
Sbjct: 155 NPDMIHLGL---------ALSNRFRF----LLRTADHFIF--------DEVHVYEGVLGA 193
Query: 417 HTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKL 476
H + R+ + +D V S+AT + EL + E+I+ L
Sbjct: 194 HIRNLADRIKE-----FKNDIHIVASSATIGATKYLFGELFGVEG-EIIEGTRRRKGIAL 247
Query: 477 FVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRK 536
L + + R L +YL A +V+ GL+ + F S++
Sbjct: 248 HGLIDSGNSSRWTL-----------------------AAYLAAVLVKKGLKVLVFTDSQQ 284
Query: 537 LCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELG 596
+ ELV + A ++ V+RAG AE+R ++E G+L GV AT LELG
Sbjct: 285 MTELV--------AKIADRFRVNLEVHRAGLNAEERIKVEEKLRNGELDGVVATPTLELG 336
Query: 597 IDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKS 656
ID+G ID + P S Q+AGR+GRR L + + P+D Y++++PE+ F
Sbjct: 337 IDIGSIDAVIMAENPPSYTKYIQRAGRAGRRNNAGLIFTILGDDPIDSYYLRHPEEFFNR 396
Query: 657 PIECCHIDAQNHKVLEQH-LVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPS 715
I+ D N +V++ H L A ++ + L + L + Y +
Sbjct: 397 KIQPLTFDPTNMEVIKIHALAYLAEKYRIRL------------DNLPPLWKKAY--EMLN 442
Query: 716 LDSSAKIFE----YIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYE 771
++ AKI + K + S+R++ V + + + E E A +Y
Sbjct: 443 IEGKAKIIGSNVLAVSETKKYLASTSLRSVGP---IVRIYEDKKKIGERELPAALHDLYP 499
Query: 772 GAVYMHQGHTYLVKELNLSSKIALCQKA--DLKYFTK---TRDYTDIHVSGGNNAYATKI 826
AVY+ TY+++EL++ IA +K +L Y+TK + D + + Y K+
Sbjct: 500 NAVYLISKKTYIIEELDIGRLIAKARKVNNELSYYTKPLYSMDLLEFNKKDEREVYGEKV 559
Query: 827 SKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSV 886
++ + L + Y +G G + ++Y ++ + I P
Sbjct: 560 EYGEM-----KLLMRVEGYVTYDVY--LKGKGGRNEYFYENPISFTYNTKGLLIYHP--- 609
Query: 887 KAVVEQNFSF---RSGLHAASHALLHVVPIYVRCNFSDLAP-ECPNPHDSRYFPERILLY 942
+ +F+ HA H L+ + + +DL P+ H +++Y
Sbjct: 610 ---LIDDFTLIDHMEAYHATEHVLISAARVAAGASLTDLGGISYPSGH--------VVIY 658
Query: 943 DRHPGGTGVSK 953
D GG+G++K
Sbjct: 659 DSSIGGSGIAK 669
>gi|320100475|ref|YP_004176067.1| DEAD/DEAH box helicase [Desulfurococcus mucosus DSM 2162]
gi|319752827|gb|ADV64585.1| DEAD/DEAH box helicase domain protein [Desulfurococcus mucosus DSM
2162]
Length = 759
Score = 182 bits (463), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 200/741 (26%), Positives = 312/741 (42%), Gaps = 129/741 (17%)
Query: 239 ALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL--S 296
L D AL GI +LY Q E+ L G+N V++ T +GK+ + LPV++ +
Sbjct: 47 GLPDPIVKALLRKGIERLYRFQYEAYRHILNGENTVISAGTGTGKTEAFLLPVIKRVVEG 106
Query: 297 HDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNA-RLL 355
+ A+ ++PTKALA+DQL + T ++ VYDGDT + R + N ++
Sbjct: 107 DGWNPRAMVLYPTKALARDQLNRFIEYT--VYPAVSFAVYDGDTPVRLRRRIASNPPSII 164
Query: 356 ITNPDMLHMSIL--PYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGA 413
++NPDMLH ++ P+ F+ F+V DE H Y+G
Sbjct: 165 VSNPDMLHTGLIYSPHVRGFAERAD----------------------FMVFDELHVYEGV 202
Query: 414 FGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCA 473
G H + RL + + S P F+ ++AT NPRE EL E ++ G
Sbjct: 203 LGSHIHHLAERLKKSRA----SKPVFIGASATIGNPREFAGELFGE---EFVEVRGE--- 252
Query: 474 QKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCR 533
W R V+ ++ S S + L + + + GLR I F
Sbjct: 253 -----TWR-----RGVVTHVLV--------SSGYMSRWSVTAQLCSILSRKGLRFIVFVD 294
Query: 534 SRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNAL 593
S++L EL+ R H V+ + V+RAG A+ RR +E G + GV AT L
Sbjct: 295 SQQLAELLTRILR------TRHGVN-VAVHRAGLPADVRRDVEAKLRSGVVDGVVATPTL 347
Query: 594 ELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKL 653
ELGID+G +D + P S + Q R R V + P+D Y+ + PE+
Sbjct: 348 ELGIDIGALDAAVMASPPPSYTK-YLQRAGRVGRRRRGYVFTVLGDDPIDTYYARMPERF 406
Query: 654 FKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYD-----EKYFGSGLSSGITTLKNRG 708
F I+ I+ N +V + HL+ L+ + + D ++ G + G +K G
Sbjct: 407 FTQSIQPSVIEPFNEEVSKTHLLAYLLQVWRARVMDLPEEWKRVLGDLAAEGF--VKTVG 464
Query: 709 -YLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFF 767
Y+ P A++F + H S+RA EV+D EV+ E A
Sbjct: 465 EYVRPVP---RRARLF-------LMEHG-SLRA-SGPVVEVVDSGRGEVIAYRELPVALL 512
Query: 768 QVYEGAVYMHQGHTYLVKELNLSSKIALCQK----ADLKYFTKTRDYTDIHV-------S 816
++Y GA+Y++ G +Y+V+ ++LSSK A ++ A T D D + S
Sbjct: 513 ELYPGAIYLYTGESYMVESIDLSSKRAYARRVSGNASYTRPLYTVDVVDYDILAERRTGS 572
Query: 817 GGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLP-KYSYES 875
G AYA + + ++ + + SG TVEL P Y Y +
Sbjct: 573 GVRAAYARVVLELRVEGVVVKDMY----------------SGETLSTVELEEPVAYRYPT 616
Query: 876 QAVWIQVPQSVKAVVEQNFSFRS---GLHAASHALLHVVPIYVRCNFSDLAPECPNPHDS 932
+A I+ P V R HA HAL+ + +DL
Sbjct: 617 RATLIKYP------VPDELGARGSAEAFHAIEHALISAARVVCGSGLTDLG-------GV 663
Query: 933 RYFPERILLYDRHPGGTGVSK 953
Y I++YD GG+GV+K
Sbjct: 664 SYPSGDIVVYDAAVGGSGVAK 684
>gi|297526930|ref|YP_003668954.1| DEAD/DEAH box helicase domain-containing protein [Staphylothermus
hellenicus DSM 12710]
gi|297255846|gb|ADI32055.1| DEAD/DEAH box helicase domain protein [Staphylothermus hellenicus
DSM 12710]
Length = 763
Score = 182 bits (463), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 192/736 (26%), Positives = 325/736 (44%), Gaps = 109/736 (14%)
Query: 234 VEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLE 293
+++PD L++ AL+ GI +LY Q ++ + L G+NVV+ T +GK+ + LP+L
Sbjct: 46 IDLPDPLIE----ALERRGIRRLYRFQYDAYKSILNGENVVITAGTGTGKTEAFLLPILR 101
Query: 294 ALSHDLS--SSALYMFPTKALAQDQLRAL--LAMTKAFDASIDIGVYDGDTTQKDRMWLR 349
+ + A+ ++PTKALA+DQL+ + F A+ VYDGDT +K R +
Sbjct: 102 KIYEKRTPKPQAMLVYPTKALARDQLQRINDYLGYGVFSAA----VYDGDTPRKIRQKIS 157
Query: 350 DNAR-LLITNPDMLHMSILPYHGQFSRILSNL--RLIAFSLVTTEVYLIFLFIRFVVIDE 406
N +++TNPDM+H+ + +LS R + S RF+V+DE
Sbjct: 158 ANPPDIVVTNPDMIHVGL---------VLSPTIRRFVKDS-------------RFMVVDE 195
Query: 407 AHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQ 466
H Y+G FG H + R+ R + + P ++ S+AT NPREH
Sbjct: 196 LHVYEGVFGSHVKAVFERINRYRRN---NPPQYIGSSATIGNPREH-------------- 238
Query: 467 NDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGL 526
+ LF + P + L + +A + ++ + L + + + GL
Sbjct: 239 ------GETLFGV--PVKVIEGPLRRRGIAYHVLVSAGRLSRWTVT--AALASVLARRGL 288
Query: 527 RCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCG 586
R I F S+++ EL+ + VD I V+RAG A++R+ IE G++ G
Sbjct: 289 RFIVFVDSQQMAELIARIAWR------SYGVD-IMVHRAGLPADERKMIESKLRAGEISG 341
Query: 587 VAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYF 646
VAAT LELGID+G +D + P S A Q+AGR+GRR R V + P+D Y+
Sbjct: 342 VAATPTLELGIDIGFLDAVIMAAPPPSFAKYLQRAGRAGRRGRKGYVFTVLADDPIDAYY 401
Query: 647 MKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKN 706
+ P++ F+ I ++D +N +VL HL+ LE I + G L
Sbjct: 402 ERNPKRYFEQEIPPLYMDPENEEVLRIHLLALLLEQ--GRIRRDGLKGVWLRVADRLRYE 459
Query: 707 RGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAF 766
R P + + ++ + E M SIR + + D+ ++ E +A
Sbjct: 460 RLVSWVGPYIYPNYRLARKVFMEYM-----SIRG-SGPQVVIYDVDEKNIVGYRELPQAV 513
Query: 767 FQVYEGAVYMHQGHTYLVKELNLSSKIALCQKA--DLKYFTK---TRDYTDIHVSGGNNA 821
++ AVY+ Y E+++ KIA ++ D Y+T+ T D D +
Sbjct: 514 LDLHPDAVYLLNRRIYKSIEIDVDKKIARVKRLPDDTPYYTRPLYTVDLVDYSI------ 567
Query: 822 YATKISKDQLTKTTAQALACTVTTTWFGFYRLWR----GSGIIFDTVELYLPKYSYESQA 877
A++ S + A + +++ + W G FD Y+Y ++A
Sbjct: 568 LASRTSSRGIPLAYAW-VKLSISVEGYIVRNYWETEKAGIKYWFDRPV----TYTYNTKA 622
Query: 878 VWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPE 937
+ ++ P++ + S HA HAL+ ++ Y
Sbjct: 623 LLLKYPENPEW---DYMSNAEAFHAIEHALISAARPVCGAALGEMG-------GISYPSG 672
Query: 938 RILLYDRHPGGTGVSK 953
I++YD PGG+G++K
Sbjct: 673 DIVIYDGAPGGSGLAK 688
>gi|332795755|ref|YP_004457255.1| DEAD/DEAH box helicase [Acidianus hospitalis W1]
gi|332693490|gb|AEE92957.1| DEAD/DEAH box helicase domain protein [Acidianus hospitalis W1]
Length = 740
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 189/735 (25%), Positives = 332/735 (45%), Gaps = 128/735 (17%)
Query: 245 KSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLE-ALSHDLSSSA 303
K++LK+ GI++LY Q +++ + KNV++ + T +GK+ + +P+L+ AL +
Sbjct: 45 KNSLKNIGITRLYKFQEKALEEIESRKNVLIISGTGTGKTEAFLIPILDLALK---GEKS 101
Query: 304 LYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDT--TQKDRMWLRDNARLLITNPDM 361
+ ++PTKALA+DQL +L + K + I++G+ DGDT ++DR++ +LITNPDM
Sbjct: 102 VIVYPTKALARDQLSRILRLIK--NLPINVGIIDGDTPKIERDRLY-ASPPDILITNPDM 158
Query: 362 LHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALI 421
+H+ LP F RI+ + F DE H Y+G G H +I
Sbjct: 159 IHVG-LPLSPNFRRIIRSAEHFVF-------------------DEIHVYEGVLGSHLRMI 198
Query: 422 LRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWN 481
+ RL + ++ + S+AT EL + E+I+ +L N
Sbjct: 199 IDRLKEFTNDIH-----IIASSATIGASPYMFQELFD-GPGEIIEGTKRRRGMAFHILVN 252
Query: 482 PTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELV 541
+K S + +YL A ++++GLR + F S+++ E
Sbjct: 253 -----------------------SKGMSRWTLAAYLAALLIKNGLRTLVFTDSQQMAE-- 287
Query: 542 LSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGH 601
+ + A ++ V+RAG + +R +IE D GK+ GV AT LELGID+G
Sbjct: 288 ------VTAKIADRFGVNMQVHRAGILPSERIKIEEDLKNGKIMGVVATPTLELGIDIGD 341
Query: 602 IDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECC 661
+DV + P S + Q+AGR+GRR R + + + P+D YF++ PE+ F +
Sbjct: 342 LDVVIMAEDPPSYSKYIQRAGRAGRRNRIGYIITILGDDPIDSYFLRKPEEFFNRKLTPL 401
Query: 662 HIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRG--YLSSDPSLDSS 719
D N +V++ H LE G+ L + ++ + LD
Sbjct: 402 PFDTTNLEVIKVHAAAYLLE-----------------KGMIKLDSLPPLWVKALKELDKE 444
Query: 720 A--KIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNE-VLEEIEESKAFFQVYEGAVYM 776
KI + + + I + +I + + E + E E A + +Y AVY+
Sbjct: 445 GKVKIVNDVAYATKQTKIFVINSSLRSTGPIIKIYNGEKKIGERELPVALYDIYPNAVYL 504
Query: 777 HQGHTYLVKELNLSSKIALCQKA--DLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKT 834
Y+VK+++L++ +A ++ DL Y+TK D+ T+I ++
Sbjct: 505 VSKKNYIVKDVDLNTLVARVERVDKDLPYYTKPLYDVDM-------VNFTEIESRKVYGL 557
Query: 835 TAQALACTVTTTWFG-----FY--RLWRGSGIIFDTVELYLP-KYSYESQAVWIQVPQSV 886
+ V + G FY + RG I +D +P Y+Y+++ + I+ P
Sbjct: 558 PVKYGEIEVRISVHGYIIHDFYSKKENRGKEIEYD-----IPLTYTYKTKGLIIKHP--- 609
Query: 887 KAVVEQNFSFRSGL---HAASHALLHVVPIYVRCNFSDLAP-ECPNPHDSRYFPERILLY 942
+ +FS G+ HA H L+ + + +DL+ P+ H +++Y
Sbjct: 610 ---ILDDFSLIDGMEAYHATEHVLISAGRVVAGASLTDLSGISYPSGH--------VVIY 658
Query: 943 DRHPGGTGVSKQVTD 957
D GG+GV+K + D
Sbjct: 659 DSVVGGSGVAKLLYD 673
>gi|218884065|ref|YP_002428447.1| DEAD/DEAH box helicase domain-containing protein [Desulfurococcus
kamchatkensis 1221n]
gi|218765681|gb|ACL11080.1| DEAD/DEAH box helicase domain protein [Desulfurococcus
kamchatkensis 1221n]
Length = 762
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 193/724 (26%), Positives = 304/724 (41%), Gaps = 112/724 (15%)
Query: 248 LKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSS--ALY 305
L GI +LY Q E+ L +N V++ TS+GK+ + LP+L + + S+ A+
Sbjct: 58 LHRRGIRRLYRFQYEAYRHILNRENTVISAGTSTGKTEAFLLPILREIYYVRKSNPRAMI 117
Query: 306 MFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDN-ARLLITNPDMLHM 364
++PTKALA+DQL T I +YDGDT ++ R + N L+I+NPDMLH+
Sbjct: 118 LYPTKALARDQLNRFTDYT--VYPIIGFSIYDGDTPRRQREKIGLNPPSLIISNPDMLHI 175
Query: 365 SILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRR 424
++ Y + N F+V DE H Y+G G H ++ R
Sbjct: 176 GLV-YSSYIRGFVENS-------------------EFMVFDELHVYEGVLGSHIHHLVER 215
Query: 425 LCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTS 484
+ R P F+ S+AT NP+E EL +E ++ + VL
Sbjct: 216 IKRTSRE----KPVFIGSSATIGNPKEFAEELFGEEVVE-VRGEAFRKGMVTHVL----- 265
Query: 485 CLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSY 544
++ S S V+YL + + GL+ I F S++L EL+
Sbjct: 266 ------------------VSSGYLSRWSVVAYLCYILSRRGLKYIVFVDSQQLAELL--- 304
Query: 545 TREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDV 604
TR + +T ++ +I V+RAG A+ RR IE G + GV AT+ LELGID+G +D
Sbjct: 305 TR--ILKTRYNV--NIMVHRAGLPADVRRDIEVKLRNGLIDGVVATSTLELGIDIGALDA 360
Query: 605 TLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHID 664
T+ + P S + Q R R V + P+D Y+ + PE+ F I I+
Sbjct: 361 TV-MAMPPPSYSKYLQRAGRAGRRRKGYVFTVLGDDPIDVYYARSPERFFTQSIPPSVIE 419
Query: 665 AQNHKVLEQHLVCAALEHPLSLIYD-----EKYFGSGLSSGITTLKNRGYLSSDPSLDSS 719
N +V + HLV L+ + I ++ GI K Y+ P
Sbjct: 420 PSNEEVAKTHLVAYLLQSWRARIDSIPGEWRNIIDELVAEGIVK-KTGEYIRPIP----- 473
Query: 720 AKIFEYIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYEGAVYMHQG 779
+ ++ S +R + E++D S + L E A ++Y GA+Y++ G
Sbjct: 474 ------VSARRLLSTQGGLRGM-GPIVEIVDSSSGDTLATRELPVALLELYPGAIYLYMG 526
Query: 780 HTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQAL 839
Y+V+ LNL K AL + TR + V + K S+ + L
Sbjct: 527 EPYIVESLNLVEKKALVKTPGENITVYTRPLYTVDVVNYDVLMERKSSRGIMASYAKVVL 586
Query: 840 ACTVTTT-----WFGFYRLWRGSGIIFDTVELYLP-KYSYESQAVWIQVPQ----SVKAV 889
+V + G R T++L P KY Y ++A+ ++ P +K
Sbjct: 587 ELSVNGVVVKDMYTGETRF---------TMDLEKPIKYQYSTRALLLKYPAYEELGIKGC 637
Query: 890 VEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFPERILLYDRHPGGT 949
E HA HAL+ + +DL Y I++YD GG+
Sbjct: 638 AE-------AFHAIEHALISAARVTCGSGLTDLG-------GISYPSGDIVIYDSAIGGS 683
Query: 950 GVSK 953
G+SK
Sbjct: 684 GLSK 687
>gi|227831111|ref|YP_002832891.1| DEAD/DEAH box helicase [Sulfolobus islandicus L.S.2.15]
gi|227457559|gb|ACP36246.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
L.S.2.15]
Length = 741
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 186/731 (25%), Positives = 320/731 (43%), Gaps = 119/731 (16%)
Query: 241 LDNT-KSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLE-ALSHD 298
+DN K + GI +LY +Q E+ +NV++ + T +GK+ + +P+L+ AL +
Sbjct: 40 IDNKLKKTITEYGIERLYKYQYEAYRKIKNKENVMIVSGTGTGKTEAFLIPILDLALRGE 99
Query: 299 LSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNA-RLLIT 357
S + ++PTKALA+DQL + + A + ++IG++DGDT +K+R L N +LIT
Sbjct: 100 RS---VLIYPTKALARDQLTRVYKL--AGELGLNIGIFDGDTPEKERERLYKNPPHILIT 154
Query: 358 NPDMLHMSILPYHGQFSRILSN-LRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGC 416
NPDM+H+ + LSN R L+ T + IF DE H Y+G G
Sbjct: 155 NPDMIHLGL---------ALSNRFRF----LLRTADHFIF--------DEVHVYEGVLGA 193
Query: 417 HTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKL 476
H + R+ + +D V S+AT + EL + E+I+ L
Sbjct: 194 HIRNLADRIKE-----FKNDIHIVASSATIGATKYLFGELFGVEG-EIIEGTRRRKGIAL 247
Query: 477 FVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRK 536
L + + R L +YL A +V+ G + + F S++
Sbjct: 248 HGLIDSGNSSRWTL-----------------------AAYLAAVLVKKGFKVLVFTDSQQ 284
Query: 537 LCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELG 596
+ ELV + A ++ V+RAG AE+R ++E G+L GV AT LELG
Sbjct: 285 MTELV--------AKIADRFRVNLEVHRAGLNAEERIKVEEKLRNGELDGVVATPTLELG 336
Query: 597 IDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKS 656
ID+G ID + P S Q+AGR+GRR L + + P+D Y++++PE+ F
Sbjct: 337 IDIGSIDAVIMAENPPSYTKYIQRAGRAGRRNNAGLIFTILGDDPIDSYYLRHPEEFFNR 396
Query: 657 PIECCHIDAQNHKVLEQH-LVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPS 715
I+ D N +V++ H L A ++ + L + L + Y +
Sbjct: 397 KIQPLTFDPTNMEVIKIHALAYLAEKYRIRL------------GNLPPLWKKAY--EMLN 442
Query: 716 LDSSAKIFE----YIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYE 771
++ AKI + K + S+R++ V + + + E E A +Y
Sbjct: 443 IEGKAKIIGSNVLAVSETKKYLASTSLRSVGP---IVRIYEDKKKIGERELPAALHDLYP 499
Query: 772 GAVYMHQGHTYLVKELNLSSKIALCQKA--DLKYFTK---TRDYTDIHVSGGNNAYATKI 826
AVY+ TY+++EL++ IA +K +L Y+TK + D + + Y K+
Sbjct: 500 NAVYLISKKTYIIEELDIGRLIAKARKVNNELSYYTKPLYSMDLLEFNKKDEREVYGEKV 559
Query: 827 SKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSV 886
++ + L + Y +G G + ++Y ++ + I P
Sbjct: 560 EYGEM-----KLLMRVEGYVTYDVY--LKGKGGRNEYFYENPISFTYNTKGLLIYHP--- 609
Query: 887 KAVVEQNFSF---RSGLHAASHALLHVVPIYVRCNFSDLAP-ECPNPHDSRYFPERILLY 942
+ +F+ HA H L+ + + +DL P+ H +++Y
Sbjct: 610 ---LIDDFTLIDHMEAYHATEHVLISAARVAAGASLTDLGGISYPSGH--------VVIY 658
Query: 943 DRHPGGTGVSK 953
D GG+G++K
Sbjct: 659 DSSIGGSGIAK 669
>gi|229579996|ref|YP_002838396.1| DEAD/DEAH box helicase [Sulfolobus islandicus Y.G.57.14]
gi|229581343|ref|YP_002839742.1| DEAD/DEAH box helicase [Sulfolobus islandicus Y.N.15.51]
gi|284998610|ref|YP_003420378.1| DEAD/DEAH box helicase [Sulfolobus islandicus L.D.8.5]
gi|228010712|gb|ACP46474.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
Y.G.57.14]
gi|228012059|gb|ACP47820.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
Y.N.15.51]
gi|284446506|gb|ADB88008.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
L.D.8.5]
Length = 741
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 186/731 (25%), Positives = 320/731 (43%), Gaps = 119/731 (16%)
Query: 241 LDNT-KSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLE-ALSHD 298
+DN K + GI +LY +Q E+ +NV++ + T +GK+ + +P+L+ AL +
Sbjct: 40 IDNKLKKTITEYGIERLYKYQYEAYRKIKNKENVMIVSGTGTGKTEAFLIPILDLALRGE 99
Query: 299 LSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNA-RLLIT 357
S + ++PTKALA+DQL + + A + ++IG++DGDT +K+R L N +LIT
Sbjct: 100 RS---VLIYPTKALARDQLTRVYKL--AGELGLNIGIFDGDTPEKERERLYKNPPHILIT 154
Query: 358 NPDMLHMSILPYHGQFSRILSN-LRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGC 416
NPDM+H+ + LSN R L+ T + IF DE H Y+G G
Sbjct: 155 NPDMIHLGL---------ALSNRFRF----LLRTADHFIF--------DEVHVYEGVLGA 193
Query: 417 HTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKL 476
H + R+ + +D V S+AT + EL + E+I+ L
Sbjct: 194 HIRNLADRIKE-----FKNDIHIVASSATIGATKYLFGELFGVEG-EIIEGTRRRKGIAL 247
Query: 477 FVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRK 536
L + + R L +YL A +V+ G + + F S++
Sbjct: 248 HGLIDSGNSSRWTL-----------------------AAYLAAVLVKKGFKVLVFTDSQQ 284
Query: 537 LCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELG 596
+ ELV + A ++ V+RAG AE+R ++E G+L GV AT LELG
Sbjct: 285 MTELV--------AKIADRFRVNLEVHRAGLNAEERIKVEEKLRNGELDGVVATPTLELG 336
Query: 597 IDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKS 656
ID+G ID + P S Q+AGR+GRR L + + P+D Y++++PE+ F
Sbjct: 337 IDIGSIDAVIMAENPPSYTKYIQRAGRAGRRNNAGLIFTILGDDPIDSYYLRHPEEFFNR 396
Query: 657 PIECCHIDAQNHKVLEQH-LVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPS 715
I+ D N +V++ H L A ++ + L + L + Y +
Sbjct: 397 KIQPLTFDPTNMEVIKIHALAYLAEKYRIRL------------DNLPPLWKKAY--EMLN 442
Query: 716 LDSSAKIFE----YIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYE 771
++ AKI + K + S+R++ V + + + E E A +Y
Sbjct: 443 IEGKAKIIGSNVLAVSETKKYLASTSLRSVGP---IVRIYEDKKKIGERELPAALHDLYP 499
Query: 772 GAVYMHQGHTYLVKELNLSSKIALCQKA--DLKYFTK---TRDYTDIHVSGGNNAYATKI 826
AVY+ TY+++EL++ IA +K +L Y+TK + D + + Y K+
Sbjct: 500 NAVYLISKKTYIIEELDIGRLIAKARKVNNELSYYTKPLYSMDLLEFNKKDEREVYGEKV 559
Query: 827 SKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSV 886
++ + L + Y +G G + ++Y ++ + I P
Sbjct: 560 EYGEM-----KLLMRVEGYVTYDVY--LKGKGGRNEYFYENPISFTYNTKGLLIYHP--- 609
Query: 887 KAVVEQNFSF---RSGLHAASHALLHVVPIYVRCNFSDLAP-ECPNPHDSRYFPERILLY 942
+ +F+ HA H L+ + + +DL P+ H +++Y
Sbjct: 610 ---LIDDFTLIDHMEAYHATEHVLISAARVAAGASLTDLGGISYPSGH--------VVIY 658
Query: 943 DRHPGGTGVSK 953
D GG+G++K
Sbjct: 659 DSSIGGSGIAK 669
>gi|238620547|ref|YP_002915373.1| DEAD/DEAH box helicase [Sulfolobus islandicus M.16.4]
gi|238381617|gb|ACR42705.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
M.16.4]
Length = 741
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 186/731 (25%), Positives = 322/731 (44%), Gaps = 119/731 (16%)
Query: 241 LDNT-KSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLE-ALSHD 298
+DN K + GI +LY +Q E+ +NV++ + T +GK+ + +P+L+ AL +
Sbjct: 40 IDNKLKKTITEYGIERLYKYQYEAYRKIKNKENVMIVSGTGTGKTEAFLIPILDLALRGE 99
Query: 299 LSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWL-RDNARLLIT 357
S + ++PTKALA+DQL + + A + ++IG++DGDT +K+R L R+ +LIT
Sbjct: 100 RS---VLIYPTKALARDQLTRVYKL--AGELGLNIGIFDGDTPEKERERLYRNPPHILIT 154
Query: 358 NPDMLHMSILPYHGQFSRILSN-LRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGC 416
NPDM+H+ + LSN R L+ T + IF DE H Y+G G
Sbjct: 155 NPDMIHLGL---------ALSNRFRF----LLRTADHFIF--------DEVHVYEGVLGA 193
Query: 417 HTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKL 476
H + R+ + +D V S+AT + EL + E+I+ L
Sbjct: 194 HIRNLADRIKE-----FKNDIHIVASSATIGATKYLFGELFGVEG-EIIEGTRRRKGIAL 247
Query: 477 FVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRK 536
L + + R L +YL A +V+ G + + F S++
Sbjct: 248 HGLIDSGNSSRWTL-----------------------AAYLAAVLVKKGWKVLVFTDSQQ 284
Query: 537 LCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELG 596
+ ELV + A ++ V+RAG AE+R ++E G+L GV AT LELG
Sbjct: 285 MTELV--------AKIADRFRVNLEVHRAGLNAEERIKVEEKLRNGELDGVVATPTLELG 336
Query: 597 IDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKS 656
ID+G ID + P S Q+AGR+GRR L + + P+D Y++++PE+ F
Sbjct: 337 IDIGSIDAVIMAENPPSYTKYIQRAGRAGRRNNAGLIFTILGDDPIDSYYLRHPEEFFNR 396
Query: 657 PIECCHIDAQNHKVLEQH-LVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPS 715
I+ D N +V++ H L A ++ + L + L + Y +
Sbjct: 397 KIQPLTFDPTNMEVIKIHALAYLAEKYRIRL------------DNLPPLWKKAY--EMLN 442
Query: 716 LDSSAKIFE----YIGHEKMPSHTISIRAIESERYEVIDMQSNEVLEEIEESKAFFQVYE 771
++ AKI + K + S+R++ V + + + E E A +Y
Sbjct: 443 IEGKAKIIGSNVLAVSETKKYLASTSLRSVGP---IVRIYEDKKKIGERELPAALHDLYP 499
Query: 772 GAVYMHQGHTYLVKELNLSSKIALCQK--ADLKYFTK---TRDYTDIHVSGGNNAYATKI 826
AVY+ TY+++EL++ IA +K ++L Y+TK + D + + Y K+
Sbjct: 500 NAVYLISKKTYIIEELDIGRLIAKARKVNSELSYYTKPLYSMDLLEFNKKDEREVYGEKV 559
Query: 827 SKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSV 886
++ + L + Y +G G + ++Y ++ + I P
Sbjct: 560 EYGEM-----KLLMRVEGYVTYDVY--LKGKGGRNEYFYENPISFTYNTKGLLIYHP--- 609
Query: 887 KAVVEQNFSF---RSGLHAASHALLHVVPIYVRCNFSDLAP-ECPNPHDSRYFPERILLY 942
+ +F+ HA H L+ + + +DL P+ H +++Y
Sbjct: 610 ---LIDDFTLIDHMEAYHATEHVLISAARVAAGASLTDLGGISYPSGH--------VVIY 658
Query: 943 DRHPGGTGVSK 953
D GG+G++K
Sbjct: 659 DSSIGGSGIAK 669
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,190,023,047
Number of Sequences: 23463169
Number of extensions: 571230267
Number of successful extensions: 1484986
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8853
Number of HSP's successfully gapped in prelim test: 8638
Number of HSP's that attempted gapping in prelim test: 1448296
Number of HSP's gapped (non-prelim): 34297
length of query: 961
length of database: 8,064,228,071
effective HSP length: 153
effective length of query: 808
effective length of database: 8,769,330,510
effective search space: 7085619052080
effective search space used: 7085619052080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 82 (36.2 bits)