BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002135
(961 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q05549|HRQ1_YEAST Putative ATP-dependent helicase HRQ1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=HRQ1 PE=1 SV=1
Length = 1077
Score = 418 bits (1074), Expect = e-115, Method: Compositional matrix adjust.
Identities = 257/772 (33%), Positives = 403/772 (52%), Gaps = 86/772 (11%)
Query: 205 EMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESI 264
+M+E L+ Q+ H I +R A + L ++ YSHQA++I
Sbjct: 243 QMIEKLKSTEFYASQIKHCFTIPSRTAKYKGLCFELAPEVYQGMEH---ENFYSHQADAI 299
Query: 265 MASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRA----L 320
+ G+NV++ T TSSGKSL Y L ++ L D S+ +Y+FPTKALAQDQ RA L
Sbjct: 300 NSLHQGENVIITTSTSSGKSLIYQLAAIDLLLKDPESTFMYIFPTKALAQDQKRAFKVIL 359
Query: 321 LAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNL 380
+ + +A +D YDGDT ++R ++R NAR++ TNPDM+H SILP H + L +L
Sbjct: 360 SKIPELKNAVVD--TYDGDTEPEERAYIRKNARVIFTNPDMIHTSILPNHANWRHFLYHL 417
Query: 381 RLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVY-GSDPSF 439
+L VV+DE H YKG FG H AL++RRL RLC Y S F
Sbjct: 418 KL-------------------VVVDELHIYKGLFGSHVALVMRRLLRLCHCFYENSGLQF 458
Query: 440 VFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDD 499
+ +AT +P +H ++ ++ + LI DGSP K V+WNP +L + +
Sbjct: 459 ISCSATLKSPVQHMKDMFGINEVTLIHEDGSPTGAKHLVVWNP-----PILPQHE----- 508
Query: 500 TRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETA-PHLVD 558
K + I E + + +++ + +R IAFC R++CEL++ R I ET LV
Sbjct: 509 -----RKRENFIRESAKILVQLILNNVRTIAFCYVRRVCELLMKEVRNIFIETGREDLVT 563
Query: 559 SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLW 618
+ YR GY A DRR+IER+ F G L V +TNALELGID+G +D L GFP S+A+
Sbjct: 564 EVMSYRGGYSASDRRKIEREMFHGNLKAVISTNALELGIDIGGLDAVLMCGFPLSMANFH 623
Query: 619 QQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFK----SPIECCHIDAQNHKVLEQH 674
QQ+GR+GRR SL + VA + P+DQ+++ +PE L + + +D N +LE H
Sbjct: 624 QQSGRAGRRNNDSLTLVVASDSPVDQHYVAHPESLLEVNNFESYQDLVLDFNNILILEGH 683
Query: 675 LVCAALEHPLSLIYDEKYFGSGLSSGITTLK----NRGYLSSDPSLDSSAKIFEYIGHEK 730
+ CAA E P++ D++YF I + GY +S+ L
Sbjct: 684 IQCAAFELPINFERDKQYFTESHLRKICVERLHHNQDGYHASNRFL-------------P 730
Query: 731 MPSHTISIRAIESERYEVIDMQS--NEVLEEIEESKAFFQVYEGAVYMHQGHTYLVKELN 788
PS +S+R E +++ V+D+ + N ++EEIE S+ F +Y+G +++HQG+ YLVKE N
Sbjct: 731 WPSKCVSLRGGEEDQFAVVDITNGRNIIIEEIEASRTSFTLYDGGIFIHQGYPYLVKEFN 790
Query: 789 LSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQALACTVTTTW- 847
+ A Q+ D+ + T RD+TD+ + ++ + L + + TT
Sbjct: 791 PDERYAKVQRVDVDWVTNQRDFTDV------DPQEIELIR-SLRNSDVPVYFGKIKTTII 843
Query: 848 -FGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQ-SVKAVVEQNFSFRSGLHAASH 905
FGF+++ + II D +E + P S+ +WI +P+ +++ ++ + +H A H
Sbjct: 844 VFGFFKVDKYKRII-DAIETHNPPVIINSKGLWIDMPKYALEICQKKQLNVAGAIHGAQH 902
Query: 906 ALLHVVPIYVRCNFSDLAPECPNP-------HDSRYFPERILLYDRHPGGTG 950
A++ ++P ++ ++ EC P R P R++ YD G G
Sbjct: 903 AIMGMLPRFIVAGVDEIQTECKAPEKEFAERQTKRKRPARLIFYDSKGGKYG 954
>sp|P50830|YPRA_BACSU Uncharacterized ATP-dependent helicase YprA OS=Bacillus subtilis
(strain 168) GN=yprA PE=3 SV=1
Length = 749
Score = 404 bits (1038), Expect = e-111, Method: Compositional matrix adjust.
Identities = 243/739 (32%), Positives = 401/739 (54%), Gaps = 60/739 (8%)
Query: 220 MVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMT 279
+V+ +I R+A +P+++ + K+AL GI +LY+HQ + G+++V T T
Sbjct: 19 VVNWHEIEPREAKTRPMPESIDERIKAALSKRGIDELYTHQYSAFQYVQKGESIVTVTPT 78
Query: 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGD 339
+SGK+LCYNLPVL++++ D ++ ALY+FPTKALAQDQ L + I YDGD
Sbjct: 79 ASGKTLCYNLPVLQSIAQDETNRALYLFPTKALAQDQKSELNEIIDEMGIDIKSFTYDGD 138
Query: 340 TTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399
T+ R +R ++ITNPDMLH +ILP+H ++ + NL
Sbjct: 139 TSPAIRQKVRKAGHIVITNPDMLHSAILPHHTKWVSLFENL------------------- 179
Query: 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL 459
+++VIDE H Y+G FG H A ++RRL R+C YGSDP F+ ++AT ANP+E +L
Sbjct: 180 KYIVIDELHTYRGVFGSHVANVIRRLKRIC-RFYGSDPVFICTSATIANPKELGEQLTG- 237
Query: 460 STLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFA 519
+ L+ ++G+P +K FV +NP ++NK N S +EV+ L
Sbjct: 238 KPMRLVDDNGAPSGRKHFVFYNP-----PIVNK----------PLNIRRSATAEVNELAK 282
Query: 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDF 579
E +++ ++ I F RSR E++LS+ +E++++ SI YR GY+ ++RR IER
Sbjct: 283 EFLKNKVQTIVFARSRVRVEIILSHIQELVKKEIG--TKSIRGYRGGYLPKERREIERGL 340
Query: 580 FGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFE 639
G + GV +TNALELG+D+G + V + G+PGS+AS WQQAGR+GRR SL + VA
Sbjct: 341 REGDILGVVSTNALELGVDIGQLQVCVMTGYPGSVASAWQQAGRAGRRHGESLIIMVANS 400
Query: 640 GPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSS 699
P+DQY +++PE F E I+ +N +L HL CAA E P DE+ FG+ S
Sbjct: 401 TPIDQYIVRHPEYFFNRSPESARINPENLIILVDHLKCAAYELPFRA--DEE-FGAMEVS 457
Query: 700 GITTLKNRGYLSSDPSLDSSAKIFEYIGHEKMPSHTISIRAIESERYEVI---DMQSNEV 756
I YL + L + + + + E P+ IS+R+ E ++ D+ + +
Sbjct: 458 DILE-----YLQEEAVLHRNGERYHW-ASESFPASNISLRSASQENVVIVDQSDIANVRI 511
Query: 757 LEEIEESKAFFQVYEGAVYMHQGHTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVS 816
+ E++ A +++ A+Y+H+G Y V++L+ K A +K D++Y YTD +++
Sbjct: 512 IGEMDRFSAMTLLHDEAIYLHEGVQYQVEKLDWDHKKAYVRKVDVEY------YTDANLA 565
Query: 817 GGNNAYATKISKDQLTKTTAQALACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQ 876
+K++ ++T+ TV F ++ + + ++LP+ +
Sbjct: 566 VQLKVLEIDKTKEK-SRTSLHYGDVTVNALPTIFKKIKMTTFENIGSGPIHLPEEELHTS 624
Query: 877 AVWIQVPQSVKAVVEQNFSFRSGLHAASHALLHVVPIYVRCNFSDLAPECPNPHDSRYFP 936
A W+++ + + + E+ + L S+ L H+VP+Y+ C+ +D+ P
Sbjct: 625 AAWLEIKTADEDIGEK--TLEQLLLGISNVLQHIVPVYIMCDRNDVHVVSQIKAAHTGLP 682
Query: 937 ERILLYDRHPGGTGVSKQV 955
I LYD +PGG G++++V
Sbjct: 683 -TIFLYDHYPGGIGLAEEV 700
>sp|O13983|HRQ1_SCHPO Putative ATP-dependent helicase hrq1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=hrq1 PE=3 SV=4
Length = 1063
Score = 400 bits (1029), Expect = e-110, Method: Compositional matrix adjust.
Identities = 235/719 (32%), Positives = 381/719 (52%), Gaps = 72/719 (10%)
Query: 250 STGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPT 309
S I K Y HQA++I G +V+V+T TSSGKSL Y +P+L++L D S+A ++FPT
Sbjct: 306 SRNIEKTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSLLEDNQSTAFFVFPT 365
Query: 310 KALAQDQLRALLAMTKAFDA--SIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSIL 367
K+LAQDQ ++L+ + +I + +DGDT + R + +A ++ TNPDMLH +IL
Sbjct: 366 KSLAQDQKKSLIDILSYMPTLKNIRVDTFDGDTPLESRESIIRSANIIFTNPDMLHQTIL 425
Query: 368 PYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCR 427
P ++ NL+L V+DEAH Y G FG H A +LRR+ R
Sbjct: 426 PNANRWYYFFKNLKLF-------------------VLDEAHVYNGIFGVHVAFVLRRMRR 466
Query: 428 LCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLR 487
+ + S FV +AT +P +H ++ + ++LI SP K FV+WNP
Sbjct: 467 IAEYFGNSQYRFVSCSATIEDPLQHMKKIFGVDNIKLINYTSSPSGSKKFVMWNPPYV-- 524
Query: 488 SVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTRE 547
D ++ + S ISE S L + + +R I FCR RK CE ++ R+
Sbjct: 525 -----------DPKHPDDGKKSAISEASKLLIKFAEKRVRTIVFCRVRKTCESLMRLVRQ 573
Query: 548 ILE-ETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTL 606
L+ + L+ I YRAGY ++RR+IE + F GKL G+ ATNALELGID+G +D +
Sbjct: 574 ELKTKQKGDLLSKIQSYRAGYTVQERRKIESEMFNGKLYGIIATNALELGIDIGSLDAVI 633
Query: 607 HLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQ 666
+GFP S+++L QQ GR+GRR + SLAVY+ P+DQ+++K+P + P +D
Sbjct: 634 TIGFPYSLSNLRQQFGRAGRRNKSSLAVYIVETFPVDQFYLKHPILIHTQPNAELTLDLT 693
Query: 667 NHKVLEQHLVCAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPSLDSSAKIFE-- 724
N +L HL CAA E P+++ DEK+FG+ + +++ ++ E
Sbjct: 694 NEVLLASHLQCAAYELPINIRSDEKFFGNQIQD---------------ICEANLEMVEES 738
Query: 725 YIGHEK---MPSHTISIRAIESERYEVIDMQS--NEVLEEIEESKAFFQVYEGAVYMHQG 779
Y H K P+ + IR++ + + ++D+ + N +LE +E + YEGAVY++QG
Sbjct: 739 YRPHPKYLPFPASQVRIRSVSEDMFTLVDVTNDKNVILELLEPFRVALTAYEGAVYVYQG 798
Query: 780 HTYLVKELNLSSKIALCQKADLKYFTKTRDYTDIHVSGGNNAYATKISKDQLTKTTAQAL 839
T++++ LN++ +I + D+++ T RD+TD+ + + + K T
Sbjct: 799 KTFIIRLLNINKRIITAHQVDVEWSTLQRDFTDV------DPVRSLMKKTMHGSTNIYFG 852
Query: 840 ACTVTTTWFGFYRLWRGSGIIFDTVELYLPKYSYESQAVWIQVPQSVKAVVE-QNFSFRS 898
A T FG++++ + I+ D V++ +S+ WI VP + V+ + + +
Sbjct: 853 AVKATLHVFGYFKVNKQKDIL-DVVDITDHPVEIDSRGFWIDVPWHIIEVLSLKKINGAA 911
Query: 899 GLHAASHALLHVVPIYVRCNFSDLAPEC-------PNPHDSRYFPERILLYDRHPGGTG 950
+HAA HALL ++PI++ + +D+ EC R P R++ YD +G
Sbjct: 912 SIHAAQHALLSLMPIFISNSGNDIRTECKAGEKEYKEAKSERRRPSRLIFYDNCGDSSG 970
>sp|Q58969|Y1574_METJA Uncharacterized ATP-dependent helicase MJ1574 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1574 PE=3 SV=1
Length = 684
Score = 142 bits (358), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 116/431 (26%), Positives = 193/431 (44%), Gaps = 60/431 (13%)
Query: 255 KLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQ 314
KLY HQ +++ K+VVV T T+SGKS + L + + + L ++PT+AL
Sbjct: 45 KLYLHQVKALKYLYNKKDVVVTTSTASGKSEIFRLAIFDNFLSNPDDRYLLIYPTRALIN 104
Query: 315 DQLRALLAMTKAF----DASIDIGVYDGDT-TQKDRMWLRDNARLLITNPDMLHMSILPY 369
+Q + F + + + GD +K R L+D +L T PDMLH IL
Sbjct: 105 NQYEKFSMENELFYKITNKRVKAEILTGDVGLEKRREILKDKPNVLFTTPDMLHYQILKN 164
Query: 370 HGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLC 429
H + +L NL+L +V+DE H Y+G FG + + +RL +L
Sbjct: 165 HNNYLWLLKNLKL-------------------LVVDELHVYRGVFGTNMVYVFKRLLKLL 205
Query: 430 SHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSV 489
+ + S AT NP+E L N E++ +P ++K + P
Sbjct: 206 KRLNNNLQILCLS-ATLKNPKEFVKLLFN-RDFEVVDKSYNPSSRKYLAILEP------- 256
Query: 490 LNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREIL 549
+N NK + L +V + ++ + F +RK E ++ +
Sbjct: 257 -----------KNLDNKQL-----LRRLIENLVDNNIKTLVFFDTRKETEKLMRFL---- 296
Query: 550 EETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLG 609
+ + Y+ R IE F G++ + TNALELGID+G +D ++ G
Sbjct: 297 --LNSKVFYKLSTYKGTLPKYVREEIEEKFKNGEILALLTTNALELGIDIGDLDAVINYG 354
Query: 610 F-PGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLF----KSPIECCHID 664
P I SL Q+ GR+GRR++ +L + V + LD Y+ ++ +L+ K IE ++
Sbjct: 355 IPPDGIFSLIQRFGRAGRRDKEALNIIVLRKDGLDYYYKEHLNELYERIRKGIIEYMPVN 414
Query: 665 AQNHKVLEQHL 675
+N V ++HL
Sbjct: 415 IKNRFVTKKHL 425
>sp|Q57742|HELX_METJA Uncharacterized ATP-dependent helicase MJ0294 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0294 PE=3 SV=1
Length = 841
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 113/443 (25%), Positives = 188/443 (42%), Gaps = 94/443 (21%)
Query: 270 GKNVVVATMTSSGKSLCYNLPVLEAL-----SHDLSSSA--LYMFPTKALAQDQLRALL- 321
GKNV++ + T SGK+L L + L + L LY+ P +AL D R L
Sbjct: 49 GKNVLICSPTGSGKTLSAFLAGINELIKLSMENKLEDRIYILYVSPLRALNNDIERNLKE 108
Query: 322 AMTKAFDASIDIGVY-----------DGDTTQKDRMWLRDNARLLITNPDMLHMSILPYH 370
+ + +D + +IG+ D ++QK RM L+ +LIT P+ L +++
Sbjct: 109 PLKEIYDVAKEIGIELDEIRVAVRTSDTTSSQKQRM-LKKPPHILITTPESLAIAL--NS 165
Query: 371 GQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCS 430
+FS++LS I++V++DE HA G H +L L RL R+ +
Sbjct: 166 PKFSQLLSG-------------------IKYVIVDEIHALTNKRGVHLSLSLERLNRIAN 206
Query: 431 HVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVL 490
+ + + +P E+A F++ N C
Sbjct: 207 FIR-------IGLSATIHP---LTEVAK------------------FLVGNGRDCY---- 234
Query: 491 NKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCE-----LVLSYT 545
D+ + K SP+ + Y +E + L + +KL E L+ + T
Sbjct: 235 ---IVDVSYKKEIEIKVISPVDDFIYTPSEEISKRL----YNLLKKLIEEHKTTLIFTNT 287
Query: 546 REILEETAPHL----VDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGH 601
R E A +L V+ + + + E R +E G++ ++ +LELG+D+G
Sbjct: 288 RSATERVAFYLKQLGVEKVETHHSSLSREHRLEVEEKLKKGEIRVCISSTSLELGVDIGS 347
Query: 602 IDVTLHLGFPGSIASLWQQAGRSGRR-ERPSLAVYVAFEGP--LDQYFMKYPEKLFKSPI 658
ID+ + LG P S++ Q+ GRSG R S + + F+ ++ + Y K+ K I
Sbjct: 348 IDLVILLGSPKSVSRALQRIGRSGHRLHEKSKGIIIPFDRDDLVENVVLAYDAKIGK--I 405
Query: 659 ECCHIDAQNHKVLEQHLVCAALE 681
+ HI VL QHLV ALE
Sbjct: 406 DRIHIPKNCLDVLAQHLVGMALE 428
>sp|P95949|HELX_SULSO Uncharacterized ATP-dependent helicase SSO0112 OS=Sulfolobus
solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 /
P2) GN=SSO0112 PE=3 SV=1
Length = 875
Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 117/471 (24%), Positives = 196/471 (41%), Gaps = 79/471 (16%)
Query: 272 NVVVATMTSSGKSLCYNLPVLEAL-----SHDLSSS--ALYMFPTKALAQDQLRALLAMT 324
NV+V++ T SGK+L L +L++L +++L A+Y+ P +AL D R LL
Sbjct: 47 NVLVSSPTGSGKTLAAFLGILDSLFELGDNNELEDKVYAIYISPLRALNNDMQRNLLEPL 106
Query: 325 KAFD------ASIDIGVYDGDTT--QKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRI 376
+ +G+ DTT +K +M L+ +LIT P+ +SI +FS+
Sbjct: 107 NELRQVNSKLPDVRVGIRTSDTTPYEKQKM-LKKPPHILITTPESFGISIT--SPKFSQK 163
Query: 377 LSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAH----AYKGAFGCHTALILRRLCRLCSHV 432
L++ ++++++DE H + +GA+ + R L
Sbjct: 164 LTD-------------------VKWIIVDEIHELANSKRGAYLSAMLELFRNLI------ 198
Query: 433 YGSDPSFV-FSTATSANPREHCMELANLSTLELIQNDG---SPCAQKLFVLWNPTSCLRS 488
+ FV + + +P E + E D P K+ S ++
Sbjct: 199 --TKKEFVRIGLSATVSPLEEVAQFLVGKDREYRIVDARFVKPVDIKVI------SPVKD 250
Query: 489 VLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREI 548
+++ S++++D KT + E+ +H I F +R E V R++
Sbjct: 251 LVHSSESEVD---KGIYKT---------ILNEVKKHRTTLI-FTNTRHATERVAYKLRKL 297
Query: 549 LEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHL 608
E VD+I + + + R +E G L V ++ +LELGID+G+ID+ + L
Sbjct: 298 AENEKVFDVDAIEAHHSSLSRDVRLDVEEKLKKGILKVVVSSTSLELGIDIGYIDLVILL 357
Query: 609 GFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKS-PIECCHIDAQN 667
P S++ L Q+ GR+G R V D KL + I+ HI
Sbjct: 358 SSPKSVSRLLQRIGRAGHHIRSISKGRVIVVDRDDLVECSVLAKLARDRKIDSIHIPKNP 417
Query: 668 HKVLEQHLVCAALEHPLSL-----IYDEKYFGSGLSSGITTLKNRGYLSSD 713
VL Q +V A+L P+ I Y S LS +L R YLS D
Sbjct: 418 LDVLSQIIVSASLISPIDRDDLFKILRRSYNFSDLSESDYSLVLR-YLSGD 467
>sp|O27830|HELX_METTH Uncharacterized ATP-dependent helicase MTH_1802
OS=Methanothermobacter thermautotrophicus (strain ATCC
29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
GN=MTH_1802 PE=3 SV=1
Length = 862
Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 115/471 (24%), Positives = 182/471 (38%), Gaps = 110/471 (23%)
Query: 260 QAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSH-----DLSSSA--LYMFPTKAL 312
Q +IM G+NV+V++ T SGK+L L ++ L+ +L S +Y+ P KAL
Sbjct: 37 QRYAIMDIHRGRNVLVSSPTGSGKTLTAFLSIISELTRLADDGELEDSVYCIYISPLKAL 96
Query: 313 AQDQLRAL---------LAMTKAFDASIDIGVYDGDTTQKDR-MWLRDNARLLITNPDML 362
D R L +A + D I V GDTT +R L+ +LIT P+ L
Sbjct: 97 DNDIERNLEEPLSAIRDIAAGEGRDLEIRKAVRTGDTTSYERSRMLKKPPHILITTPETL 156
Query: 363 HMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAY-KGAFGCHTALI 421
SIL +F LS +R+V++DE H+ G H +L
Sbjct: 157 --SILLVAPKFREKLST-------------------VRYVIVDEIHSLADNKRGVHLSLS 195
Query: 422 LRRL---------CRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPC 472
L RL L + V+ + F S C+ + ++S L+ + D C
Sbjct: 196 LERLQHLVGDFTRIGLSATVHPLERVARFLVGYSYGSERECL-IVDVSYLKELDID-LIC 253
Query: 473 AQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFC 532
V +P ++ + ++D R + F
Sbjct: 254 PVDDIVAADPEEIGNALYDILHDLIEDHRT-------------------------TLIFT 288
Query: 533 RSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNA 592
+R E V+ + E+ +I + + E R E G+L V ++ +
Sbjct: 289 NTRSGTESVVYNLKSRFPESYSD--SNIMAHHSSLSREIRLETEEKLKRGELKAVVSSTS 346
Query: 593 LELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRR--ERP---------------SLAVY 635
LELGID+G+ID+ + L P S++ Q+ GRSG + +R SL +
Sbjct: 347 LELGIDIGYIDLVVLLSSPKSVSRALQRIGRSGHQLHQRSKGRIVVVDRDDLVECSLILK 406
Query: 636 VAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPLSL 686
A EG +D K P C VL QH+ A+E+P +
Sbjct: 407 NALEGKIDS---------IKVPENCL-------DVLAQHIYGMAIENPWDI 441
>sp|Q9VGI8|BLM_DROME Bloom syndrome protein homolog OS=Drosophila melanogaster GN=mus309
PE=1 SV=1
Length = 1487
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 106/380 (27%), Positives = 159/380 (41%), Gaps = 63/380 (16%)
Query: 250 STGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPT 309
S G+ +Q + I A+L G + V T GKSLCY LP + L+ ++ + + P
Sbjct: 732 SFGLKSFRPNQLQVINATLLGNDCFVLMPTGGGKSLCYQLPAI--LTEGVT---IVISPL 786
Query: 310 KALAQDQLRALLAMTKAFDASIDIGV--YDGDTTQKDRMWLRDNARLLITNPDMLHM-SI 366
K+L DQ+ L AS+DI G+ D M + R L + P M+ + +
Sbjct: 787 KSLIFDQINKL--------ASLDICAKSLSGEQKMADVMAI---YRDLESQPPMVKLLYV 835
Query: 367 LPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLC 426
P +I S+ R T + +I VIDEAH +G ++L
Sbjct: 836 TP-----EKISSSARFQD----TLDTLNSNNYISRFVIDEAHCV-SQWGHDFRPDYKKLG 885
Query: 427 RLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCL 486
L + + P+ TAT A PR LA L+ ++N C W +S
Sbjct: 886 VLKKR-FPNVPTIAL-TAT-ATPRVRLDILAQLN----LKN----CK------WFLSSFN 928
Query: 487 RSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTR 546
RS L R K S + ++S QH I +C SRK C+
Sbjct: 929 RSNLR--------YRVLPKKGVSTLDDISRYIRSKPQH-FSGIIYCLSRKECD------- 972
Query: 547 EILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTL 606
E ++ V ++ Y AG DR ++D+ GK+ + AT A +GID + L
Sbjct: 973 ETSKKMCKDGVRAVS-YHAGLTDTDRESRQKDWLTGKMRVICATVAFGMGIDKPDVRFVL 1031
Query: 607 HLGFPGSIASLWQQAGRSGR 626
H P SI +Q+AGR+GR
Sbjct: 1032 HYSLPKSIEGYYQEAGRAGR 1051
>sp|O18017|BLM_CAEEL Bloom syndrome protein homolog OS=Caenorhabditis elegans GN=him-6
PE=2 SV=2
Length = 988
Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 101/394 (25%), Positives = 165/394 (41%), Gaps = 63/394 (15%)
Query: 240 LLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDL 299
L D KS G ++ Q + I+++L G + V T +GKSLCY LP + L
Sbjct: 235 LYDTLKSKF---GFNQFRHRQKQCILSTLMGHDTFVLMPTGAGKSLCYQLPAV-----IL 286
Query: 300 SSSALYMFPTKALAQDQLRALLAMTKAFDA-SIDIGVYDGDTTQKDRMWLRDNARLLITN 358
+ + P ++L +DQ + + +A + D+G +++++ A L N
Sbjct: 287 PGVTVVVSPLRSLIEDQKMKMKELGIGCEALTADLGA-----PAQEKIY----AELGSGN 337
Query: 359 PDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHT 418
P + + + P +I ++ RL + V +++ L RFV IDEAH +G
Sbjct: 338 PSIKLLYVTP-----EKISASGRLNS---VFFDLHRRGLLARFV-IDEAHCV-SQWGHDF 387
Query: 419 ALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFV 478
+L L Y + P + + +A P+ +L +QN KLF+
Sbjct: 388 RPDYTKLSSL-REKYANPPVPIIALTATATPKIVTDARDHLK----MQN------SKLFI 436
Query: 479 LWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLC 538
+S +R L D AA + + ++ L+ G I +C SRK C
Sbjct: 437 ----SSFVRDNLK-----YDLIPKAARSLINVVEKMKQLYP-----GKSGIVYCLSRKEC 482
Query: 539 ELV-LSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGI 597
E V + T+ L S VY AG R ++R + K + AT A +GI
Sbjct: 483 ETVQMMLTKAGL---------SAEVYHAGLNDNLRVSVQRSWIANKFDVICATIAFGMGI 533
Query: 598 DVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPS 631
D + +H P SI +Q+ GR+GR PS
Sbjct: 534 DKPDVRFVIHYSLPKSIEGYYQETGRAGRDGMPS 567
>sp|P50729|RECS_BACSU Probable ATP-dependent DNA helicase RecS OS=Bacillus subtilis
(strain 168) GN=recS PE=3 SV=1
Length = 496
Score = 73.9 bits (180), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 92/395 (23%), Positives = 160/395 (40%), Gaps = 71/395 (17%)
Query: 252 GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKA 311
G + Q + I + L+GK+ + T GKSLCY LP + L L + P +
Sbjct: 13 GFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLP-----GYMLDGMVLIVSPLLS 67
Query: 312 LAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNA---RLLITNPDMLHMSILP 368
L +DQ++ L A + A+++ + +++R ++ ++ + L +P+ L P
Sbjct: 68 LMEDQVQQLKARGEKRAAALNSML-----NRQERQFVLEHIHRYKFLYLSPEALQS---P 119
Query: 369 YHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRL 428
Y +L L+ + SL VIDEAH +G +L +L
Sbjct: 120 Y------VLEKLKSVPISLF--------------VIDEAHCI-SEWGHDFRPDYSKLGQL 158
Query: 429 CSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRS 488
+ P + TAT+ +E ++ NL L+ + L + P LR
Sbjct: 159 RKKL--GHPPVLALTATAT--KETLQDVMNLLELQ-------HAVRHLNSVNRPNIALR- 206
Query: 489 VLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREI 548
NAA+ T+ I V L + G I +C +RK + +E+
Sbjct: 207 -----------VENAAD-TAEKIDRVIQLVENLQGPG---IVYCPTRK-------WAKEL 244
Query: 549 LEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHL 608
E Y G + DR I++ F +L + TNA +G+D I +H
Sbjct: 245 AGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHF 304
Query: 609 GFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLD 643
P + + Q+ GR+GR +PS+++ + G +
Sbjct: 305 HLPQTAEAFMQEIGRAGRDGKPSVSILLRAPGDFE 339
>sp|P71359|RECQ_HAEIN ATP-dependent DNA helicase RecQ OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=recQ PE=3 SV=1
Length = 619
Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 98/421 (23%), Positives = 163/421 (38%), Gaps = 83/421 (19%)
Query: 233 LVEIPDALLDNTKSALKST-GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPV 291
++E P AL S LKS G Q E I A+L G++ +V T +GKSLCY +P
Sbjct: 10 IIEKPTAL-----SVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIP- 63
Query: 292 LEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDN 351
AL D L + P +L +DQ+ L A D + ++++ +
Sbjct: 64 --ALCFD--GLTLVISPLISLMKDQVDQLQANGIEADFLNSSQTLEQQQQVQNKL-ISGQ 118
Query: 352 ARLLITNPDMLHMSILPYHGQFSRILSN--LRLIAFSLVTTEVYLIFLFIRFVVIDEAHA 409
+LL +P+ ++++N +LI++S V F+ IDEAH
Sbjct: 119 LKLLYVSPE--------------KVMTNSFFQLISYSKVC-----------FIAIDEAH- 152
Query: 410 YKGAFGCHTALILRRLCRLCSHVYGSD--PSFVFSTATSANPREHCMELANLSTLELIQN 467
C +G D P + A+ + + L
Sbjct: 153 -------------------CISQWGHDFRPEYTQLGGLKAS-------FPDAPIMALTAT 186
Query: 468 DGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLR 527
Q + N + + + D + R + P+ +++ + Q G
Sbjct: 187 ADYATQQDILRHLNLKNLHKYI---GSFDRPNIRYTLEEKYKPMEQLTRFV--LAQKGKS 241
Query: 528 CIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGV 587
I +C SR E + E+ + S Y AG R R+++DF + V
Sbjct: 242 GIIYCNSRNKVERI--------AESLRNKGVSAAAYHAGMETAIRERVQQDFQRDNVQVV 293
Query: 588 AATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFM 647
AT A +GI+ ++ H P SI S +Q+ GR+GR + P+ AV F P D ++
Sbjct: 294 VATIAFGMGINKSNVRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVL--FYEPADYAWL 351
Query: 648 K 648
+
Sbjct: 352 Q 352
>sp|P30015|LHR_ECOLI Probable ATP-dependent helicase lhr OS=Escherichia coli (strain
K12) GN=lhr PE=3 SV=2
Length = 1538
Score = 70.5 bits (171), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 101/403 (25%), Positives = 169/403 (41%), Gaps = 78/403 (19%)
Query: 271 KNVVVATMTSSGKSLCYNLPVLEALSHD-----------LSSSALYMFPTKALAQDQLRA 319
++ +V T SGK+L L L+ L + +S LY+ P KAL D R
Sbjct: 45 EHALVIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRN 104
Query: 320 LLAMTKAF----------DASIDIGVYDGDTTQKDRMWL-RDNARLLITNPDMLHMSILP 368
L K + ++ +G+ GDT ++R L R+ +LIT P+ L++ +
Sbjct: 105 LQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTRNPPDILITTPESLYLMLT- 163
Query: 369 YHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGA-FGCHTALILRRLCR 427
SR LR + V+IDE HA G+ G H AL L RL
Sbjct: 164 -----SRARETLR----------------GVETVIIDEVHAVAGSKRGAHLALSLERLDA 202
Query: 428 LCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLR 487
L + + +AT + + L + ++ Q V+ P + +
Sbjct: 203 LLH----TSAQRIGLSATVRSASDVAAFLGGDRPVTVVNPPAMRHPQIRIVV--PVANMD 256
Query: 488 SVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTRE 547
V + + +D+ + P E L E+++H I F SR L E + + E
Sbjct: 257 DVSSVASGTGEDSHAGREGSIWPYIETGIL-DEVLRH-RSTIVFTNSRGLAEKLTARLNE 314
Query: 548 I----LEETAPHLVDS------------------ICVYRA--GYVAEDRRRI-ERDFFGG 582
+ L+ + VD+ + + R+ G V++++R I E+ G
Sbjct: 315 LYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSG 374
Query: 583 KLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSG 625
+L V AT++LELGID+G +D+ + + P S+AS Q+ GR+G
Sbjct: 375 ELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAG 417
>sp|O94761|RECQ4_HUMAN ATP-dependent DNA helicase Q4 OS=Homo sapiens GN=RECQL4 PE=1 SV=1
Length = 1208
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 102/403 (25%), Positives = 151/403 (37%), Gaps = 80/403 (19%)
Query: 247 ALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYM 306
AL+ G Q ++M L+G + ++ T +GKSLCY LP L S L +
Sbjct: 472 ALEQLGHQAFRPGQERAVMRILSGISTLLVLPTGAGKSLCYQLPAL-LYSRRSPCLTLVV 530
Query: 307 FPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNAR------LLITNPD 360
P +L DQ+ L KA A I G+ T+K R + R L++T
Sbjct: 531 SPLLSLMDDQVSGLPPCLKA--ACIHSGM-----TRKQRESVLQKIRAAQVHVLMLTPEA 583
Query: 361 MLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTAL 420
++ LP Q + F IDEAH
Sbjct: 584 LVGAGGLPPAAQLPPVA-----------------------FACIDEAHCLSQWSHNFRPC 620
Query: 421 ILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLW 480
LR +C++ G F+ TAT+ + S AQ L V
Sbjct: 621 YLR-VCKVLRERMGVH-CFLGLTATA------------------TRRTASDVAQHLAVAE 660
Query: 481 NP----TSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRK 536
P + + + L+ S + DT A ++ L + Q+ I +C R+
Sbjct: 661 EPDLHGPAPVPTNLHLSVSMDRDTDQAL---------LTLLQGKRFQNLDSIIIYCNRRE 711
Query: 537 LCELVLSYTREILEET--------APHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVA 588
E + + R L AP Y AG + +RRR++R F G+L V
Sbjct: 712 DTERIAALLRTCLHAAWVPGSGGRAPKTTAE--AYHAGMCSRERRRVQRAFMQGQLRVVV 769
Query: 589 ATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPS 631
AT A +G+D + LHLG P S S Q GR+GR +P+
Sbjct: 770 ATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAVGRAGRDGQPA 812
>sp|Q9TXJ8|RECQ1_CAEEL Putative ATP-dependent DNA helicase Q1 OS=Caenorhabditis elegans
GN=K02F3.12 PE=3 SV=3
Length = 631
Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 90/392 (22%), Positives = 154/392 (39%), Gaps = 75/392 (19%)
Query: 253 ISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKAL 312
+ K Q +I A ++ ++ VV T GKSLCY LP L L++ L AL + P +L
Sbjct: 107 LEKFRPLQRAAINAVMSKEDAVVILSTGGGKSLCYQLPAL--LANGL---ALVVSPLISL 161
Query: 313 AQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRD-------NARLLITNPDMLHMS 365
+DQ+ L ++ ID + +T++++ + D RLL P+ L S
Sbjct: 162 VEDQILQLRSL------GIDSSSLNANTSKEEAKRVEDAITNKDSKFRLLYVTPEKLAKS 215
Query: 366 ILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRL 425
++++ L E L F++ + IDE H
Sbjct: 216 --------KKMMNKL----------EKSLSVGFLKLIAIDEVHC---------------- 241
Query: 426 CRLCSHVYGSDPSF--VFSTATSANPREHCMELANLSTLELIQND-GSPCAQKLFVLWNP 482
C H + +D SF V P A + L+ +++ G A +N
Sbjct: 242 CSQWGHDFRTDYSFLNVLKRQFKGVPILGLTATATSNVLDDVKDMLGIQAALTFRAGFNR 301
Query: 483 TSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVL 542
++ V+ K ++ + T A + G I +C SR CE V
Sbjct: 302 SNLKYKVVQKPGSEDECTEEIAKTIKRDFA------------GQTGIIYCLSRNDCEKVA 349
Query: 543 SYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHI 602
+ H + + Y A DR + + GK+ + AT A +GID ++
Sbjct: 350 KALK-------SHGIKAKH-YHAYMEPVDRSGAHQGWISGKIQVIVATVAFGMGIDKPNV 401
Query: 603 DVTLHLGFPGSIASLWQQAGRSGRRERPSLAV 634
+H P SI + +Q++GR+GR +P+ +
Sbjct: 402 RFVIHHSLPKSIENYYQESGRAGRDGQPATCI 433
>sp|O59025|HELS_PYRHO Putative ski2-type helicase OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=PH1280 PE=3 SV=1
Length = 715
Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 111/448 (24%), Positives = 182/448 (40%), Gaps = 87/448 (19%)
Query: 242 DNTKSALKSTGISKLYSHQAESIMAS-LAGKNVVVATMTSSGKSLCYNLPVLEALSHDLS 300
+ K LK GIS+LY QAE++ + L G+N ++A T+SGK+L + ++ L +
Sbjct: 10 ERIKEVLKKRGISELYPPQAEALTSGILKGENALIAIPTASGKTLIAEIAIVNRLLKE-G 68
Query: 301 SSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPD 360
A+Y+ P KALA+++ + + + + + GD KD WL ++ T
Sbjct: 69 GKAVYLVPLKALAEEKFKEFKDWE---ELGLKVAMATGDYDSKDE-WLGGYDIIIATAE- 123
Query: 361 MLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTAL 420
L HG S + N+++ LV E++LI +GA +
Sbjct: 124 --KFDSLLRHG--SSWIRNVKV----LVVDEIHLI-----------GSRDRGA--TLEFI 162
Query: 421 ILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLW 480
I + L R + + G +AT NP ELA +LI++D W
Sbjct: 163 ITQMLNR--AQIIG-------LSATIGNPE----ELAEWLNAKLIKSD-----------W 198
Query: 481 NPTSCLRSVLNKSQTDMDDTRNAANKTSSPI-------SEVSYLFAEMVQHGLRCIAFCR 533
P R V + +D + + + S+ S +F M + + A
Sbjct: 199 RPVKLRRGVFYQGFVFWEDGKTEKFNSWEELVYDAIKRSKGSLVFVNMRRKAEKT-ALEL 257
Query: 534 SRKLCELV-------LSYTREILEET------APHLVDSICVYRAGYVAEDRRRIERDFF 580
S+K+ + L E LEE A L + + AG E+R +E +F
Sbjct: 258 SKKIRNFLTKKELRELKELAESLEENPTNEKLAKALQGGVAFHHAGLGREERVLVEENFK 317
Query: 581 GGKLCGVAATNALELGIDVGHIDVTLHLGFPGS--------IASLWQQAGRSGRRERPSL 632
G + V AT L GI+ V + + S I + Q GR+GR + +
Sbjct: 318 KGLIKVVVATPTLSAGINTPAFRVIVRDTWRYSEFGMERIPILEIQQMMGRAGRPKYDEV 377
Query: 633 --AVYVA-FEGP---LDQYFMKYPEKLF 654
A+ V+ E P +++Y PEKLF
Sbjct: 378 GEAIIVSTTEEPSTVMERYIKGKPEKLF 405
>sp|Q9CL21|RECQ_PASMU ATP-dependent DNA helicase RecQ OS=Pasteurella multocida (strain
Pm70) GN=recQ PE=3 SV=1
Length = 632
Score = 66.6 bits (161), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 93/397 (23%), Positives = 150/397 (37%), Gaps = 79/397 (19%)
Query: 252 GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVL--EALSHDLSSSALYMFPT 309
G Q E I A+L GK+ +V T +GKSLCY +P L E L+ L + P
Sbjct: 35 GYQSFRKGQEEVIDATLMGKDSLVIMATGNGKSLCYQIPALCFEGLT-------LVISPL 87
Query: 310 KALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPY 369
+L +DQ+ LLA D + ++++ + +LL +P+ + +
Sbjct: 88 ISLMKDQVDQLLANGIEADYLNSSQTFTEQQQVQNKL-MSGTLKLLYVSPEKVMTT---- 142
Query: 370 HGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLC 429
F ++S+ + + FV IDEAH C
Sbjct: 143 --SFFHLISHCK-----------------VSFVAIDEAH--------------------C 163
Query: 430 SHVYGSD--PSFV-FSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCL 486
+G D P + S P M L + Q+ + L +P +
Sbjct: 164 ISQWGHDFRPEYTQLGGLKSCFPHAPIMALTATADHATRQD-----ILRHLNLQSPHVYI 218
Query: 487 RSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTR 546
S D + R + P+ ++ + Q G I +C SR E +
Sbjct: 219 GSF------DRPNIRYTLVEKFKPMEQLCRFV--LGQKGKSGIIYCNSRSKVERI----- 265
Query: 547 EILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTL 606
E+ + S Y AG R +++R F + V AT A +GI+ ++ +
Sbjct: 266 ---AESLRNKGVSAQAYHAGLETSQREQVQRAFQRDNVQVVVATIAFGMGINKSNVRFVV 322
Query: 607 HLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLD 643
H P SI S +Q+ GR+GR + P+ AV F P D
Sbjct: 323 HFDLPRSIESYYQETGRAGRDDLPAEAVL--FYEPAD 357
>sp|Q75NR7|RECQ4_MOUSE ATP-dependent DNA helicase Q4 OS=Mus musculus GN=Recql4 PE=2 SV=2
Length = 1216
Score = 66.6 bits (161), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 99/391 (25%), Positives = 164/391 (41%), Gaps = 51/391 (13%)
Query: 247 ALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYM 306
AL+ G Q +IM L+G + ++ T +GKSLCY LP L + L +
Sbjct: 489 ALERLGYRAFRPGQERAIMRILSGISTLLVLPTGAGKSLCYQLPAL-LYAQRSPCLTLVV 547
Query: 307 FPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNAR-----LLITNPDM 361
P +L DQ+ L + KA A + G+ T+K R + R +LI +P+
Sbjct: 548 SPLLSLMDDQVSDLPSCLKA--ACLHSGM-----TKKQRESVLKKVRAAQVHVLIVSPEA 600
Query: 362 LHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALI 421
L G + + L IAF+ + EV+ + + +H ++ +
Sbjct: 601 LVGCGARGPGSLPQA-AQLPPIAFACID-EVHCLSQW--------SHNFRPCY------- 643
Query: 422 LRRLCRLCSHVYGSDPSF-VFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLW 480
R+C++ G + +TAT + R+ L EL + P L V
Sbjct: 644 -LRVCKVLREHMGVRCFLGLTATATRSTARDVAQHLGIAGEFELSGSANIPANLHLSVSM 702
Query: 481 NPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCEL 540
+ S ++++ Q D T + S + Y E +Q+G +A R+ C
Sbjct: 703 DRDS-DQALVTLLQGDRFRTLD---------SVIIYCTRERIQNGW--LALLRT---CLS 747
Query: 541 VLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVG 600
++ +R P + Y AG +++RRR+++ F G L V AT A +G+D
Sbjct: 748 MVGDSRP--RGCGPEAIAE--AYHAGMSSQERRRVQQAFMRGHLRMVVATVAFGMGLDRP 803
Query: 601 HIDVTLHLGFPGSIASLWQQAGRSGRRERPS 631
+ LHLG P S S Q GR+GR +P+
Sbjct: 804 DVRAVLHLGLPPSFESYVQAIGRAGRDGKPA 834
>sp|Q19546|WRN_CAEEL Probable Werner syndrome ATP-dependent helicase homolog 1
OS=Caenorhabditis elegans GN=wrn-1 PE=3 SV=2
Length = 1056
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 99/406 (24%), Positives = 156/406 (38%), Gaps = 93/406 (22%)
Query: 260 QAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRA 319
Q + + L GK+ V T GKS+CY LP L L+S + + P +L DQ+
Sbjct: 232 QWDVVRNVLGGKDQFVLMSTGYGKSVCYQLPSLL-----LNSMTVVVSPLISLMNDQVTT 286
Query: 320 LLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSN 379
L++ ID DG +TQ + W Q + +
Sbjct: 287 LVS------KGIDAVKLDGHSTQIE--W-----------------------DQVANNMHR 315
Query: 380 LRLIAFS--LVTTEVYLIFL-----FIRFVVIDEAHA-------YKGAFGCHTALILRR- 424
+R I S +VT++ L L I + IDEAH ++ ++ H A I R
Sbjct: 316 IRFIYMSPEMVTSQKGLELLTSCRKHISLLAIDEAHCVSQWGHDFRNSYR-HLAEIRNRS 374
Query: 425 -LCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPT 483
LC + P + + R+ +ANL + + S + L++
Sbjct: 375 DLCNI--------PMIALTATATVRVRDDV--IANLRLRKPLITTTSFDRKNLYI----- 419
Query: 484 SCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLS 543
SV S DM + KT + G I +C+++++ + V
Sbjct: 420 ----SV--HSSKDMAEDLGLFMKTDE---------VKGRHFGGPTIIYCQTKQMVDDVNC 464
Query: 544 YTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHID 603
R I +A H Y AG R + DF K+ + AT A +GID +
Sbjct: 465 VLRRIGVRSA-H-------YHAGLTKNQREKAHTDFMRDKITTIVATVAFGMGIDKPDVR 516
Query: 604 VTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKY 649
+H G P +I S +Q+ GR+GR PS+ F P D +K+
Sbjct: 517 NVIHYGCPNNIESYYQEIGRAGRDGSPSIC--RVFWAPKDLNTIKF 560
>sp|Q9FT73|MED34_ARATH Mediator of RNA polymerase II transcription subunit 34
OS=Arabidopsis thaliana GN=MED34 PE=1 SV=1
Length = 705
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 90/389 (23%), Positives = 151/389 (38%), Gaps = 72/389 (18%)
Query: 252 GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKA 311
GISK ++Q E I A + G++V+V GKSLCY LP + + L + P +
Sbjct: 86 GISKYRANQKEIINAIMTGRDVLVIMAAGGGKSLCYQLPAMLR-----GGTTLVVSPLLS 140
Query: 312 LAQDQLRALLAM-TKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYH 370
L QDQ+ L A+ A+ + G + K D+ ++L P+ + S
Sbjct: 141 LIQDQVMGLAALGISAYMLTSTSGKENEKFVYKALEKGEDDLKILYVTPEKVSKS----- 195
Query: 371 GQFSRILSNLRLI----AFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLC 426
R +S L SL++ IDEAH
Sbjct: 196 ---KRFMSKLEKCHNAGRLSLIS--------------IDEAH------------------ 220
Query: 427 RLCSHVYGSD--PSFV-FSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPT 483
C +G D P + S + P+ + L +T + +QND L + +
Sbjct: 221 --CCSQWGHDFRPDYKNLSILKTQFPKVPMVALTATAT-QKVQND-------LIEMLHIP 270
Query: 484 SCLRSVLNKSQTDM-DDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVL 542
C++ V + ++ ++ R + + E++ E + I +C SRK CE +
Sbjct: 271 KCVKFVSSVNRPNLFYSVREKSAVGKLVVDEIAEFIRESYSNNESGIVYCFSRKECEQIA 330
Query: 543 SYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHI 602
RE S Y A A R ++ + KL + T A +GI+ +
Sbjct: 331 GDLRE--------RGISADYYHADMDANMREKVHMRWSKNKLQVIVGTVAFGMGINKPDV 382
Query: 603 DVTLHLGFPGSIASLWQQAGRSGRRERPS 631
+H S+ + +Q++GR+GR PS
Sbjct: 383 RFVIHHSLSKSMETYYQESGRAGRDGLPS 411
>sp|Q9V0A9|HELS_PYRAB Putative ski2-type helicase OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=PYRAB08810 PE=3 SV=1
Length = 715
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 111/458 (24%), Positives = 179/458 (39%), Gaps = 107/458 (23%)
Query: 242 DNTKSALKSTGISKLYSHQAESIMAS-LAGKNVVVATMTSSGKSLCYNLPVLEALSHDLS 300
+ K L+ GI +LY QAE++ + L G+N++VA T+SGK+L + + L +
Sbjct: 10 EKIKEILRERGIEELYPPQAEALTSGVLEGENLLVAIPTASGKTLIAEIAIANKLLEE-G 68
Query: 301 SSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPD 360
A+Y+ P KALA+++ R + + + + GD KD WL ++I +
Sbjct: 69 GKAVYIVPLKALAEEKFREFKDWER---LGLKVAMATGDYDSKDE-WL-GKYDIIIATAE 123
Query: 361 MLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAY----KGAFGC 416
S+L + + R ++ +VIDE H +GA
Sbjct: 124 KFD-SLLRHGSSWIRD----------------------VKMLVIDEIHLIGSRDRGA--T 158
Query: 417 HTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKL 476
+I + L R + + G +AT NP ELA +LI++D P +
Sbjct: 159 LEFIITQMLGR--AQIIG-------LSATIGNPE----ELAEWLNAKLIRSDWRPVKLRK 205
Query: 477 ------FVLWNPTSCLR---------SVLNKSQTDM--DDTRNAANKTSSPISEVSYLFA 519
FV W R + K + + + R A KT+ + A
Sbjct: 206 GVFYQGFVFWEDGGSERYNSWEELVYDAVKKGKGALVFVNMRRKAEKTALEL-------A 258
Query: 520 EMVQHGLRCIAFCRSRKLCE-LVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERD 578
+ V++ L R+L E L + T E L A L+ + + AG ++R +E +
Sbjct: 259 KKVKNYLDRKELRELRELAESLEENPTNEKL---AKALLSGVAFHHAGLGRDERVLVEDN 315
Query: 579 FFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGS--------IASLWQQAGRSGR---- 626
F G + V AT L GI+ V + + S + + Q GR+GR
Sbjct: 316 FRKGLIKVVVATPTLSAGINTPAFRVIIRDTWRYSEFGMERIPVLEVQQMMGRAGRPRYD 375
Query: 627 ----------RERPSLAVYVAFEGPLDQYFMKYPEKLF 654
E PSL + D Y PEKLF
Sbjct: 376 EVGEAIIVSTTEEPSLVI--------DHYIKGKPEKLF 405
>sp|Q5UPX0|YR290_MIMIV Putative ATP-dependent RNA helicase R290 OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_R290 PE=3 SV=1
Length = 548
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 89/379 (23%), Positives = 148/379 (39%), Gaps = 74/379 (19%)
Query: 252 GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKA 311
G Q E I + G++V MTS+GKSLC+ +P L L A+ + P +
Sbjct: 26 GYDNFRPRQYEIINKVINGEDVCAILMTSAGKSLCFQIPALY-----LDKPAIIISPLIS 80
Query: 312 LAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPD-MLHMSILPYH 370
L +DQ R +L + V + +KD M + + + +P+ ++H+ L
Sbjct: 81 LMEDQ-RLILEKLGISSCCYNSNVENKAQMRKDIMQFK--YKFIYVSPESVVHLKDL--- 134
Query: 371 GQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKG-AFGCHTALILRRLCRLC 429
+V E F I + IDEAH F TA R
Sbjct: 135 ----------------IVKLED---FQGISLIAIDEAHCISAYGFDFRTAY---REITFF 172
Query: 430 SHVYGSDPSFVFS-TATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRS 488
+ + P + TAT+ ++ C ++ L T E I+ ++ +
Sbjct: 173 KEILPNVPILALTATATNIVAKDIC-KVLQLKTNEPIKAS-----------FDRPNLYLE 220
Query: 489 VLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREI 548
V KS+ +D NK + I +C ++K T++I
Sbjct: 221 VRTKSKNPANDIVPIINKYPNQ----------------SVIIYCLTKK-------ETQKI 257
Query: 549 LEETAPHLVDSIC-VYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLH 607
+ H V +C +Y AG E + + +F K+ V AT A +GI+ + V +H
Sbjct: 258 ADILTVHKV--VCGIYHAGLSNEHKTKTHTNFINNKIKIVVATIAFGMGINKPDVRVVIH 315
Query: 608 LGFPGSIASLWQQAGRSGR 626
G P +I +Q+ GR+GR
Sbjct: 316 YGAPKNIEGYYQEIGRAGR 334
>sp|O73946|HELS_PYRFU Putative ski2-type helicase OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF0677 PE=1 SV=1
Length = 720
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 108/454 (23%), Positives = 177/454 (38%), Gaps = 99/454 (21%)
Query: 242 DNTKSALKSTGISKLYSHQAESIMAS-LAGKNVVVATMTSSGKSLCYNLPVLEALSHDL- 299
+ KS LK GI Y QAE++ + L GKN +++ T+SGK+L + A+ H +
Sbjct: 10 ERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEI----AMVHRIL 65
Query: 300 --SSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLIT 357
A+Y+ P KALA+++ + K + + + GD KD WL ++ T
Sbjct: 66 TQGGKAVYIVPLKALAEEKFQEFQDWEK---IGLRVAMATGDYDSKDE-WLGKYDIIIAT 121
Query: 358 NPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCH 417
L HG S + ++++ LV E++LI +GA
Sbjct: 122 AE---KFDSLLRHG--SSWIKDVKI----LVADEIHLI-----------GSRDRGA---- 157
Query: 418 TALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLF 477
L + +H+ G + +AT NP ELA ELI +D
Sbjct: 158 ------TLEVILAHMLGK-AQIIGLSATIGNPE----ELAEWLNAELIVSD--------- 197
Query: 478 VLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSY----------LFAEMVQHGLR 527
W P R V + +D + ++ SS E+ Y +F M + R
Sbjct: 198 --WRPVKLRRGVFYQGFVTWED--GSIDRFSS-WEELVYDAIRKKKGALIFVNMRRKAER 252
Query: 528 CIAFCRSRKLCELVLSYTREILEETAPHLVDS-------------ICVYRAGYVAEDRRR 574
+A S+K+ L+ L E A L ++ + + AG ++R
Sbjct: 253 -VALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVL 311
Query: 575 IERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGS--------IASLWQQAGRSGR 626
+E +F G + V AT L GI+ V + + S I + Q GR+GR
Sbjct: 312 VEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGR 371
Query: 627 RERPSLA---VYVAFEGP---LDQYFMKYPEKLF 654
+ + + + P ++ Y PEKLF
Sbjct: 372 PKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLF 405
>sp|Q0W6L1|HELS_UNCMA Putative ski2-type helicase OS=Uncultured methanogenic archaeon
RC-I GN=UNCMA_22030 PE=3 SV=1
Length = 740
Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 100/444 (22%), Positives = 162/444 (36%), Gaps = 99/444 (22%)
Query: 234 VEIPDALLDNTKSALKSTGISKLYSHQAESIMASLA-GKNVVVATMTSSGKSLCYNLPVL 292
+ +P AL K +GI +LY QAE+I L GKN++ A T+SGK+L + +L
Sbjct: 6 LNLPQAL----KDFYTGSGIPELYPPQAEAIRQGLLDGKNLLAAIPTASGKTLLAEMAML 61
Query: 293 EALSHDLSSSALYMFPTKALAQDQLRALLAMTK--AFDASIDIGVYDGDTTQKDRMWLRD 350
++++ A+Y+ P KALA ++ L +K + +G+ GD +D
Sbjct: 62 KSIAE--GGKAIYIVPLKALASEKYDRFLEFSKLPIKPDGVKVGIATGDFDSRDE----- 114
Query: 351 NARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAY 410
Y G+ I++ L +L L + VV DE H
Sbjct: 115 ------------------YLGEKDIIVATSEKTDSLLRNGASWLSGLSV--VVADEVHLI 154
Query: 411 KGA-FGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDG 469
G + L +L ++ ++ + +AT N + LA L+Q++
Sbjct: 155 DSPNRGPTLEVTLAKLRKINVNL-----QILALSATIGNAK----ALAKWMDAALVQSE- 204
Query: 470 SPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCI 529
W PT+ V + N EV+ L A+ ++ G +C+
Sbjct: 205 ----------WRPTTLKEGVFYGRAITFKKEKRTVNNAGP--DEVNSLVADTLEEGGQCL 252
Query: 530 AFCRSRKLCELVLSYTREIL----------------------------EETAPHLVDSIC 561
F +RK E + L E+ A + + +
Sbjct: 253 VFANTRKSSESIAQKVARSLSKKLQPAEKEQLAKLKQDVLRHAETDTCEKLAECVGNGVA 312
Query: 562 VYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGI----------DVGHIDVTLHLGFP 611
+ AG E RR +E F L +A T L G+ D DV + P
Sbjct: 313 FHHAGLKGEHRRIVEDGFRQNILKVIACTPTLAAGLNLPARRVIIRDYKRFDVN-YGSVP 371
Query: 612 GSIASLWQQAGRSGRRERPSLAVY 635
+ Q AGR+G RP L Y
Sbjct: 372 IPVLEYKQMAGRAG---RPRLDPY 392
>sp|Q9FT72|RQL3_ARATH ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana
GN=RECQL3 PE=1 SV=1
Length = 713
Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 97/413 (23%), Positives = 155/413 (37%), Gaps = 90/413 (21%)
Query: 252 GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKA 311
G + Q E+I A ++G++ T GKS+CY +P L L + P A
Sbjct: 33 GHADFRGKQLEAIQAVVSGRDCFCLMPTGGGKSICYQIPALAK-----PGIVLVVSPLIA 87
Query: 312 LAQDQLRALLAMTKAFD-ASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMS--ILP 368
L ++Q+ AL A + S + + +D + + RLL P+++ +L
Sbjct: 88 LMENQVMALKEKGIAAEYLSSTQATHVKNKIHEDLDSGKPSVRLLYVTPELIATKGFMLK 147
Query: 369 YHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRL 428
SR L NL + IDEAH
Sbjct: 148 LRKLHSRGLLNL---------------------IAIDEAH-------------------- 166
Query: 429 CSHVYGSD--PSF-VFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFV----LWN 481
C +G D PS+ ST + LA++ L L +P QK + L N
Sbjct: 167 CISSWGHDFRPSYRQLSTLRDS--------LADVPVLALTAT-AAPKVQKDVIDSLNLRN 217
Query: 482 PTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSY--LFAEMVQHGLRCIAFCRSRKLCE 539
P L+S N+ EV Y L + C + +C
Sbjct: 218 PL-VLKSSFNRPNI---------------FYEVRYKDLLDNAYTDLGNLLKSCGN--ICA 259
Query: 540 LVLSYTREILEETAPHLVD---SICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELG 596
++ R ++ + HL S Y AG ++ R + D+ K + AT A +G
Sbjct: 260 IIYCLERTTCDDLSVHLSSIGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVATVAFGMG 319
Query: 597 IDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKY 649
ID + + H P S+ S +Q++GR+GR + PS +V + G D+ M+Y
Sbjct: 320 IDKKDVRMVCHFNIPKSMESFYQESGRAGRDQLPSRSVL--YYGVDDRKKMEY 370
>sp|Q09811|HUS2_SCHPO ATP-dependent DNA helicase hus2/rqh1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rqh1 PE=1 SV=1
Length = 1328
Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 529 IAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVA 588
I +C SR CE V + R A H Y AG +R+RI+ ++ G +
Sbjct: 746 IIYCLSRTSCEQVAAKLRNDYGLKAWH-------YHAGLEKVERQRIQNEWQSGSYKIIV 798
Query: 589 ATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPS 631
AT A +G+D G + +H FP S+ +Q+ GR+GR +P+
Sbjct: 799 ATIAFGMGVDKGDVRFVIHHSFPKSLEGYYQETGRAGRDGKPA 841
Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 259 HQAESIMASLAGKNVVVATMTSSGKSLCYNLP-VLEALSHDLSSSALYMFPTKALAQDQL 317
+Q E+I +L+GK+V + T GKSLCY LP V+E + L + P +L QDQL
Sbjct: 523 NQLEAINGTLSGKDVFILMPTGGGKSLCYQLPAVIEGGAS--RGVTLVISPLLSLMQDQL 580
Query: 318 RAL 320
L
Sbjct: 581 DHL 583
>sp|P35187|SGS1_YEAST ATP-dependent helicase SGS1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SGS1 PE=1 SV=1
Length = 1447
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 85/375 (22%), Positives = 144/375 (38%), Gaps = 70/375 (18%)
Query: 259 HQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLR 318
+Q E++ A+L GK+V V T GKSLCY LP + S + + + P +L QDQ+
Sbjct: 682 NQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAV-VKSGKTHGTTIVISPLISLMQDQVE 740
Query: 319 ALLAMTKAFDASIDIGVYDGDTTQKDR-----MWLRDNARLLITNPDMLHMSILPYHGQF 373
LL + +I ++ T + R +++ L+ +P+M+ S Q
Sbjct: 741 HLL------NKNIKASMFSSRGTAEQRRQTFNLFINGLLDLVYISPEMISAS-----EQC 789
Query: 374 SRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVY 433
R +S L Y R +V+DEAH +G H + + Y
Sbjct: 790 KRAISRL------------YADGKLAR-IVVDEAHCVSN-WG-HDFRPDYKELKFFKREY 834
Query: 434 GSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKS 493
P + S R +++I N L P L+ N++
Sbjct: 835 PDIPMIALTATASEQVR-----------MDIIHN---------LELKEPV-FLKQSFNRT 873
Query: 494 QTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETA 553
+ + N V F Q G I +C S+K CE + +A
Sbjct: 874 NLYYEVNKKTKNTIFEICDAVKSRFKN--QTG---IIYCHSKKSCE----------QTSA 918
Query: 554 PHLVDSI--CVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFP 611
+ I Y AG ++R +++ + ++ + AT A +GID + H P
Sbjct: 919 QMQRNGIKCAYYHAGMEPDERLSVQKAWQADEIQVICATVAFGMGIDKPDVRFVYHFTVP 978
Query: 612 GSIASLWQQAGRSGR 626
++ +Q+ GR+GR
Sbjct: 979 RTLEGYYQETGRAGR 993
>sp|Q0ILZ4|RH9_ORYSJ DEAD-box ATP-dependent RNA helicase 9 OS=Oryza sativa subsp.
japonica GN=Os12g0611200 PE=2 SV=1
Length = 628
Score = 57.4 bits (137), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 93/403 (23%), Positives = 163/403 (40%), Gaps = 85/403 (21%)
Query: 246 SALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEA-LSHDLSSS-- 302
S L S GI+KL+ Q + ++ GK++V T +GK+L + +P+L+A + H+ +S
Sbjct: 111 SQLASRGITKLFPIQRAVLEPAMQGKDMVGRAKTGTGKTLAFGIPILDAIIRHNEKNSPG 170
Query: 303 ----ALYMFPTKALAQDQLRALLAMTKAFDASID---IGVYDGDTTQKDRMWLRDNARLL 355
A+ + PT+ LA+ + + F S + I VY G + L ++
Sbjct: 171 KFPLAIVLAPTRELAKQ-------VEREFSDSSNVETICVYGGTPISQQIRQLNYGVDVV 223
Query: 356 ITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEA-HAYKGAF 414
I P R++ L+ A +L +RFVV+DEA F
Sbjct: 224 IGTP--------------GRVIDLLKRGALNLSE---------VRFVVLDEADQMLSVGF 260
Query: 415 GCHTALILRRLCRLCSHVYGSDPSFVFS-TATSANPREHCMELANLSTLELIQNDGSPCA 473
IL R V + +FS T + R L N T++L+ D A
Sbjct: 261 DEDVETILDR-------VPPKRQTLMFSATMPTWIQRLTQKYLKNPVTIDLVGEDDQKLA 313
Query: 474 QKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCR 533
+ + L S+ A++ + + + L E + G +CI F +
Sbjct: 314 EGI--------SLYSI--------------ASEGHAKPAVLGELIKEHAKGG-KCIVFTQ 350
Query: 534 SRKLCELVLSYTREILEETAPHLVDSI-CVYRAGYVAE-DRRRIERDFFGGKLCGVAATN 591
+++ + LSYT + S C G + + R R + F G + AT+
Sbjct: 351 TKRDADR-LSYT----------MGRSFQCQALHGDITQAQRERTLKGFREGHFNILIATD 399
Query: 592 ALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAV 634
G+D+ ++D+ +H P S ++GR+GR + A+
Sbjct: 400 VAARGLDIPNVDLVIHFELPNSSELFVHRSGRTGRAGKKGKAI 442
>sp|P51979|HFM1_YEAST ATP-dependent DNA helicase MER3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=HFM1 PE=1 SV=3
Length = 1187
Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 88/398 (22%), Positives = 170/398 (42%), Gaps = 78/398 (19%)
Query: 227 SARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLC 286
SA+K + I L D+ + K T +K+ S SI S +N ++++ T SGK++
Sbjct: 116 SAKKCLSTTI---LPDSFRGVFKFTEFNKMQSEAFPSIYES--NENCIISSPTGSGKTVL 170
Query: 287 YNLPVL----EALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDT-- 340
+ L +L E S ++ +Y+ PTK+L + + +F ++ +G+ DT
Sbjct: 171 FELAILRLIKETNSDTNNTKIIYIAPTKSLCYEMYKNWFP---SF-VNLSVGMLTSDTSF 226
Query: 341 --TQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLF 398
T+K + ++IT P+ + + +SR+ F
Sbjct: 227 LETEKAK-----KCNIIITTPEKWDLLTRRW-SDYSRL-------------------FEL 261
Query: 399 IRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELAN 458
++ V++DE H K G +IL R+ +C ++ FV +AT N + + L
Sbjct: 262 VKLVLVDEIHTIKEKRGASLEVILTRMNTMCQNI-----RFVALSATVPNIEDLALWLKT 316
Query: 459 LSTL--ELIQNDGSPCAQKL--FVLWNPTSCLR-----SVLNKSQTDMDDTRNAANKT-- 507
+ L ++ D S +L FV +C ++ N ++ + ++A N+
Sbjct: 317 NNELPANILSFDESYRQVQLTKFVYGYSFNCKNDFQKDAIYNSKLIEIIE-KHADNRPVL 375
Query: 508 ------SSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSIC 561
+S IS +L + F +S+K C + + +IL E + I
Sbjct: 376 IFCPTRASTISTAKFLLNNHI--------FSKSKKRCN--HNPSDKILNEC---MQQGIA 422
Query: 562 VYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDV 599
+ AG EDR +E++F G + + +T+ L +G+++
Sbjct: 423 FHHAGISLEDRTAVEKEFLAGSINILCSTSTLAVGVNL 460
>sp|Q6CDN5|DBP6_YARLI ATP-dependent RNA helicase DBP6 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=DBP6 PE=3 SV=1
Length = 607
Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 107/476 (22%), Positives = 192/476 (40%), Gaps = 81/476 (17%)
Query: 229 RKAVLVEIPDA-------LLDNTKSALKSTGISKLYSHQA---------ESIMASLAGKN 272
R A VEI D L N L + G +K +S Q + ++A +
Sbjct: 177 RNATYVEIDDVGSFDEFDLSKNMMKNLDTLGYTKAFSVQKAVIPWLLAQQKLLAPDRKPD 236
Query: 273 VVVATMTSSGKSLCYNLPVLEALSHDLSS--SALYMFPTKALAQDQLRALLAMTKAFDAS 330
++V+ T SGK+ Y +P++E L + A+ + PTK L L ++K S
Sbjct: 237 LLVSASTGSGKTATYGIPIIEKLRDRIVPRIRAVVVLPTKPLVMQVRDVLENLSKGSSLS 296
Query: 331 IDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTT 390
+ + + + +T+++R L + A +++ P L ++ N L
Sbjct: 297 V-VALRNDRSTKRERAVL-ETADIVVAAPGRL----------VEQVKENPEL-------- 336
Query: 391 EVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRR--------LCRLCSHVYGSDPSFVFS 442
F +I F+V+DEA G A +L+ L H + + +FS
Sbjct: 337 -----FSYIEFLVVDEADRLLGQDYYDWASVLQNNQQRAQAGKTNLTEHYVRNMQTLIFS 391
Query: 443 TATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRN 502
+ANP EH + I N G +FV+ + S + KS T++ +
Sbjct: 392 ATLTANP-EHIASMD-------IHNPG------VFVIGSSDSY---SIPKSLTEIVTHVS 434
Query: 503 AANKTSSPISEVSYLFAEMVQHGL-RCIAFCRSRKLCELVLSYTREILEETAPHLVDSIC 561
AA K P+ L +VQ + R + F +S + V + EI++ H I
Sbjct: 435 AAEK---PL----MLCELLVQRDINRGVVFTKSSETAARV-ARMMEIMDADIFHKDWKIA 486
Query: 562 VYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQA 621
A + RRR + F GK+ + T+ + GID +D ++ P +
Sbjct: 487 AVSAETSSVHRRRSMKQFIDGKIDFLVCTDLVSRGIDF-VVDNVINYDIPSGKREYVHRV 545
Query: 622 GRSGRRERPSLAVYVAFEGPLD-QYFMKYPEKLFKS-PIECCHIDAQNHKVLEQHL 675
GR+ R R A Y G + ++F + E + ++ ++ HI++ ++ ++ L
Sbjct: 546 GRTARAGREGNA-YTFLTGSGEAKWFREIGEFVGRTQEVDATHINSSHNDGYQEAL 600
>sp|Q9FT74|RQL1_ARATH ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana
GN=RECQL1 PE=2 SV=1
Length = 606
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 97/378 (25%), Positives = 142/378 (37%), Gaps = 78/378 (20%)
Query: 260 QAESIMASLAGKNVVVATMTSSGKSLCYNLP-VLEALSHDLSSSALYMFPTKALAQDQLR 318
Q ++ AS+ K+ V T GKSLCY LP L+A + + P +L QDQ+
Sbjct: 211 QHQACRASMERKDCFVLMPTGGGKSLCYQLPATLKA------GVTIVISPLLSLIQDQIV 264
Query: 319 AL---LAMTKAFDASIDIGVYDGDTTQKDRMWLRDN--ARLLITNPDMLHMSILPYHGQF 373
AL + F S Q+ R RDN +LL P+ + S
Sbjct: 265 ALNLKFGIPATFLNSQQTSSQAAAVLQELR---RDNPSCKLLYVTPEKIAGS-------- 313
Query: 374 SRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVY 433
S L LR + L FVV DEAH C +
Sbjct: 314 SSFLETLRCLDRK---------GLLAGFVV-DEAH--------------------CVSQW 343
Query: 434 GSD--PSFVFSTATSAN-PREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVL 490
G D P + N PR M L +T S C L L P + VL
Sbjct: 344 GHDFRPDYRELGCLKQNFPRVPVMALTATAT-------ESVCQDVLKSLRIPRA---PVL 393
Query: 491 NKSQTDMDDTRNAANKTSSPISEVSYLFAEMV--QHGLRCIAFCRSRKLCELVLSYTREI 548
S ++ KT P+ ++ L + Q G I +C S+ C V + E
Sbjct: 394 KMSFDRINLKYEVIVKTKEPLKQLQELLRDRFKDQSG---IVYCLSKSECVDVAKFLNEK 450
Query: 549 LEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHL 608
+ + Y AG A+ R ++R + G++ V AT A +GID + +H
Sbjct: 451 CKVKTVY-------YHAGVPAKQRVDVQRKWQTGEVRIVCATIAFGMGIDKADVRFVIHN 503
Query: 609 GFPGSIASLWQQAGRSGR 626
++ S +Q++GR+GR
Sbjct: 504 TLSKAVESYYQESGRAGR 521
>sp|O94762|RECQ5_HUMAN ATP-dependent DNA helicase Q5 OS=Homo sapiens GN=RECQL5 PE=1 SV=2
Length = 991
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 90/383 (23%), Positives = 153/383 (39%), Gaps = 70/383 (18%)
Query: 260 QAESIMASLAG-KNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLR 318
Q + MA + G K+V V T +GKSLCY LP L L+ ++ + + P AL QDQ+
Sbjct: 34 QESATMAVVKGNKDVFVCMPTGAGKSLCYQLPAL--LAKGIT---IVVSPLIALIQDQVD 88
Query: 319 ALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILS 378
LL + + + + + ++R L A L P + I P S
Sbjct: 89 HLLTL------KVRVSSLNSKLSAQERKELL--ADLEREKPQTKILYITPEMAASSSFQP 140
Query: 379 NLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSD-- 436
L SLV+ + + ++V+DEAH C +G D
Sbjct: 141 TLN----SLVSRHL------LSYLVVDEAH--------------------CVSQWGHDFR 170
Query: 437 PSFV-FSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQT 495
P ++ S C+ L +T ++ ++ + K V T C R+ L
Sbjct: 171 PDYLRLGALRSRLGHAPCVALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANL----- 225
Query: 496 DMDDTRNAANKTSSPISEVS-YLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAP 554
D + S P + + + Q + ++ C +V TRE E+ A
Sbjct: 226 -FYDVQ-FKELISDPYGNLKDFCLKALGQEADKGLSGC------GIVYCRTREACEQLA- 276
Query: 555 HLVDSIC------VYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHL 608
++ C Y AG A +R ++ D+ K+ + AT + +G+D ++ H
Sbjct: 277 --IELSCRGVNAKAYHAGLKASERTLVQNDWMEEKVPVIVATISFGMGVDKANVRFVAHW 334
Query: 609 GFPGSIASLWQQAGRSGRRERPS 631
S+A +Q++GR+GR +PS
Sbjct: 335 NIAKSMAGYYQESGRAGRDGKPS 357
>sp|Q0WVW7|RQL5_ARATH ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis thaliana
GN=RECQL5 PE=2 SV=2
Length = 911
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%)
Query: 563 YRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAG 622
Y +G A+DR RI+ F K+ V AT A +G+D G + +H PGS+ Q+ G
Sbjct: 516 YHSGLPAKDRVRIQESFCSNKIRVVVATVAFGMGLDKGDVGAVIHFSVPGSMEEYVQEIG 575
Query: 623 RSGRRER 629
R+GR R
Sbjct: 576 RAGRDGR 582
Score = 38.9 bits (89), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 74/172 (43%), Gaps = 16/172 (9%)
Query: 162 YVKERRTDVRGNEVKRARRSQSSTSSSHSF-----QRRCSDKSQLLPLEMVEHLRKGIGS 216
+VK RG + + S + SS+SF +++ +D LE L+K I
Sbjct: 173 FVKLNLNGKRGKKFPSKYKGVSKSRSSYSFRGKRYKKKEADGDGESLLEEESDLQKQIED 232
Query: 217 Q--GQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVV 274
+ G + VED A AV E D L TK G Q ++I L G + +
Sbjct: 233 EANGFISSVED--AILAVKTEASDENL--TKLLNLVYGYDSFRDGQLQAIKMILGGSSTM 288
Query: 275 VATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKA 326
+ T +GKSLCY +P + L L + P +L DQL+ L ++ K
Sbjct: 289 LVLPTGAGKSLCYQIPAM-----ILPGITLVVSPLVSLMIDQLKHLPSIIKG 335
>sp|Q8TL39|HELS_METAC Putative ski2-type helicase OS=Methanosarcina acetivorans (strain
ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=MA_3203 PE=3
SV=1
Length = 730
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 106/438 (24%), Positives = 167/438 (38%), Gaps = 100/438 (22%)
Query: 240 LLDNTKSALKSTGISKLYSHQAESIMASL-AGKNVVVATMTSSGKSLCYNLPVLEALSHD 298
L D K +++GI +LY QAE++ L GKN++ A T+SGK+L L +L+++
Sbjct: 8 LPDEVKRFYENSGIPELYPPQAEAVEKGLLEGKNLLAAIPTASGKTLLAELAMLKSVLA- 66
Query: 299 LSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITN 358
ALY+ P +ALA ++ R + + I +G+ GD ++D L N ++ T+
Sbjct: 67 -GGKALYIVPLRALASEKFRRFQDFS---ELGIRVGISTGDYDRRDE-GLGINDIIVATS 121
Query: 359 PDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAH----AYKGAF 414
SL+ E + I VV+DE H A +G
Sbjct: 122 EK-----------------------TDSLLRNETAWM-QEISVVVVDEVHLIDSADRGPT 157
Query: 415 GCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQ 474
T LR++ C + +AT N ELA EL+ ++
Sbjct: 158 LEVTLAKLRKMNPFC--------QILALSATVGN----ADELAAWLDAELVLSE------ 199
Query: 475 KLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRS 534
W PT + V D + + E L + ++ G +C+ F S
Sbjct: 200 -----WRPTDLMEGVFFDGTFFCKDKEKLIEQPTK--DEAINLVLDTLREGGQCLVFESS 252
Query: 535 RKLC--------------------ELVLSYTREILE--ETAPHLVDSICV------YRAG 566
RK C E + EILE ET V + CV + AG
Sbjct: 253 RKNCMGFAKKATSAVKKTLSAEDKEKLAGIADEILENSETDTASVLASCVRAGTAFHHAG 312
Query: 567 YVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLH--------LGF-PGSIASL 617
+ R +E F G + +++T L G+++ V + G P +
Sbjct: 313 LTSPLRELVETGFREGYVKLISSTPTLAAGLNLPARRVIIRSYRRYSSDSGMQPIPVLEY 372
Query: 618 WQQAGRSGRRERPSLAVY 635
Q AGR+G RP L Y
Sbjct: 373 KQMAGRAG---RPRLDPY 387
>sp|Q8PZR7|HELS_METMA Putative ski2-type helicase OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=MM_0425 PE=3 SV=1
Length = 730
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 104/437 (23%), Positives = 167/437 (38%), Gaps = 98/437 (22%)
Query: 240 LLDNTKSALKSTGISKLYSHQAESIMASL-AGKNVVVATMTSSGKSLCYNLPVLEALSHD 298
L D K +++GI +LY QAE++ L GKN++ A T+SGK+L L +L+++ +
Sbjct: 8 LPDEIKRFYENSGILELYPPQAEAVEKGLLEGKNLLAAIPTASGKTLLAELAMLKSVLN- 66
Query: 299 LSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITN 358
ALY+ P +ALA ++ R + + +G+ GD ++D L N ++ T+
Sbjct: 67 -GGKALYIVPLRALASEKFRRFQEFSV---LGMRVGISTGDYDRRDE-GLGINDIIVATS 121
Query: 359 PDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGA-FGCH 417
SL+ E + I VV DE H G
Sbjct: 122 EK-----------------------TDSLLRNETAWM-QEISVVVADEVHLIDSPDRGPT 157
Query: 418 TALILRRLCRLCSHVYGSDPS--FVFSTATSANPREHCMELANLSTLELIQNDGSPCAQK 475
+ L +L R+ +PS + +AT N ELA EL+ ++
Sbjct: 158 LEITLSKLRRM-------NPSCQVLALSATVGN----ADELAAWLDAELVLSE------- 199
Query: 476 LFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSR 535
W PT + V D + + E L + ++ G +C+ F SR
Sbjct: 200 ----WRPTDLMEGVFYNGIFYCKDKEKPVGQPTK--DEAVNLVLDTIKEGGQCLVFESSR 253
Query: 536 KLC--------------------ELVLSYTREILE--ETAPHLVDSICV------YRAGY 567
K C E + EI+E ET V + CV + AG
Sbjct: 254 KNCMGFAKKAVSAVKKTLSNEDRETLAGIADEIIENSETDVSSVLATCVRSGTAFHHAGL 313
Query: 568 VAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLH--------LGF-PGSIASLW 618
R +E F G++ +++T L G+++ V + G P +
Sbjct: 314 TTPLRELVENGFREGRIKIISSTPTLAAGLNLPARRVIIRSYRRYSSDSGMQPIPVLEYK 373
Query: 619 QQAGRSGRRERPSLAVY 635
Q AGR+G RP L Y
Sbjct: 374 QMAGRAG---RPRLDPY 387
>sp|A5DLE0|DBP8_PICGU ATP-dependent RNA helicase DBP8 OS=Meyerozyma guilliermondii
(strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC
10279 / NRRL Y-324) GN=DBP8 PE=3 SV=2
Length = 433
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 81/403 (20%), Positives = 157/403 (38%), Gaps = 54/403 (13%)
Query: 247 ALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHD-LSSSALY 305
AL + I S QAE I LAG++ + T SGK++ + P++ S D L
Sbjct: 15 ALAAMKIRSPTSIQAECIPQILAGRDCIGGAKTGSGKTIAFAAPMMTKWSEDPFGIYGLV 74
Query: 306 MFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMS 365
+ PT+ LA LA+ + + + + V G+ K + ++ + +I P L
Sbjct: 75 LTPTRELALQIAEQFLALGASMNIKVAV-VVGGEDMVKQALEIQKSPHFIIATPGRLADH 133
Query: 366 ILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRL 425
IL + L+ I+F+V+DEA
Sbjct: 134 IL---NSGDDTVGGLKR----------------IKFLVLDEAD----------------- 157
Query: 426 CRLCSHVYGSDPSFVFSTATSANPREHCMELANLS-TLELIQNDGSPCAQK-LFVLWNPT 483
RL S+ +GSD F A+ R+ + A ++ + +++ P +K +F+
Sbjct: 158 -RLLSNSFGSDLERCFKILPDASKRQTLLFTATVTDAVRALKDKPVPEGKKPVFI----- 211
Query: 484 SCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLS 543
+++K Q + A T S + SY+ + + L + ++ + + +
Sbjct: 212 ---HEIVSKDQVAI-----PATLTISYVFVPSYVKEAYLHNILVSPKYEKASAIVFVNRT 263
Query: 544 YTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHID 603
YT EIL T L + + +R F G + AT+ G+D+ +++
Sbjct: 264 YTAEILRRTLRKLDIRVASLHSEMPQSERTNSLHRFRAGAARVLIATDVASRGLDIPNVE 323
Query: 604 VTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYF 646
+ ++ P + GR+ R + +V + E +++
Sbjct: 324 LVVNQDIPADPDDYIHRVGRTARAGKKGGSVSIVSEKDVERIL 366
>sp|Q9DBN9|DDX59_MOUSE Probable ATP-dependent RNA helicase DDX59 OS=Mus musculus GN=Ddx59
PE=2 SV=1
Length = 619
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 103/439 (23%), Positives = 171/439 (38%), Gaps = 97/439 (22%)
Query: 205 EMVEHLRK--GIGSQGQMVHVEDISARKAVLVE---IPDALLDNTKSALKSTGISKLYSH 259
+ +E L++ GI QGQ V AR + E P+ L N LK +G
Sbjct: 180 DQIETLKQQLGISVQGQDV------ARPIIDFEHCGFPETLNQN----LKKSGYEVPTPI 229
Query: 260 QAESIMASLAGKNVVVATMTSSGKSLCYNLPV-LEALSHDLSSSALYMFPTKALA---QD 315
Q + I L G++++ + T SGK+ + LPV + A S D + SAL + PT+ LA +
Sbjct: 230 QMQMIPVGLLGRDILASADTGSGKTAAFLLPVIIRAFSEDKTPSALILTPTRELAIQIER 289
Query: 316 QLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSR 375
Q + L++ + +G G LR + +++I P R
Sbjct: 290 QAKELMSGLPRMKTVLLVG---GLPLPPQLYRLRQHVKVIIATP--------------GR 332
Query: 376 ILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAY-KGAFGCHTALILRRLCRLCSHVYG 434
+L ++ + SL I+ VV+DEA K F +++ + H G
Sbjct: 333 LLDIIKQSSVSLSG---------IKIVVVDEADTMLKMGFQ-------QQVLDVLEHTPG 376
Query: 435 SDPSFVFSTATSANPREHCMELANLSTLELIQNDGS-PCAQ-KLFVLWNPTSCLRSVLNK 492
D + +AT + E + + + +I D + PCA + +LW
Sbjct: 377 -DCQTILVSATIPDSIEQLTDQLLHNPVRIITGDKNLPCASVRQIILW------------ 423
Query: 493 SQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEET 552
++D A K I LF V + C KL +LS
Sbjct: 424 ----VEDP--AKKKKLFEILNDQKLFKPPVLVFVDC-------KLGADLLS--------- 461
Query: 553 APHLVDSICVYRAGYVAEDRRRIE-RDFFGGKLCG----VAATNALELGIDVGHIDVTLH 607
V I + + ++ ++E RD G L G V +T L G+D+ ++ + ++
Sbjct: 462 --EAVQKITGLNSTSIHSEKSQVERRDILKGLLEGDYEVVVSTGVLGRGLDLVNVKLVVN 519
Query: 608 LGFPGSIASLWQQAGRSGR 626
P S+ Q GR GR
Sbjct: 520 FDMPSSMDEYVHQVGRVGR 538
>sp|Q5JGV6|HELS_PYRKO Putative ski2-type helicase OS=Pyrococcus kodakaraensis (strain
ATCC BAA-918 / JCM 12380 / KOD1) GN=TK1332 PE=3 SV=1
Length = 1125
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
Query: 242 DNTKSALKSTGISKLYSHQAESIMAS-LAGKNVVVATMTSSGKSLCYNLPVLEALSHDLS 300
+ K +K GI +LY QAE++ + L GKN+V+A T+SGK+L + ++ L +
Sbjct: 10 ERIKRVIKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVSEIVMVNKLLSE-G 68
Query: 301 SSALYMFPTKALAQDQLR 318
A+Y+ P KALA+++ R
Sbjct: 69 GKAVYLVPLKALAEEKYR 86
>sp|Q6FY67|MAK5_CANGA ATP-dependent RNA helicase MAK5 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=MAK5 PE=3 SV=1
Length = 733
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 89/416 (21%), Positives = 178/416 (42%), Gaps = 54/416 (12%)
Query: 244 TKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL---SHDLS 300
T + L + G +++ Q SI A+L GK+++ T SGK+L Y +P++E + +L
Sbjct: 166 TINGLSNLGFTEMTPIQKLSIPAALEGKDIMGKASTGSGKTLAYGIPIIEKMIKSKDNLR 225
Query: 301 SSALYMFPTKALAQD---QLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLR--DNARLL 355
++ + PT+ LAQ L+ + +M + + + + G + QK L+ +AR++
Sbjct: 226 TNGIIFTPTRELAQQVTKHLQNVCSMLLKKNPYMILSLTGGLSIQKQERLLKYDGSARIV 285
Query: 356 ITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAY--KGA 413
+ P G+F ++ E+ F I +V+DEA G
Sbjct: 286 VATP-----------GRFLELIEK---------NEELMKRFAKIDVLVLDEADRLLQDGH 325
Query: 414 FGCHTALILRRLCRLCSHVYGSD--PSFVFSTATSANPREHCMELANLSTLELIQNDGSP 471
F IL+ L R+ + + + ++S S + + +LAN S + +N+
Sbjct: 326 FDEFEK-ILKHLGRIRKSLKNMEYWQTLIYSATFSTDLFD---KLANSSWKK--KNNSKD 379
Query: 472 CAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAF 531
++ VL + + KS+ M D N +K S+ I E S + ++ L C F
Sbjct: 380 ESEMESVL---KHLMTKINFKSKPMMIDA-NPEDKISAQIKE-SLIECAPLERDLYCYYF 434
Query: 532 CRSRKLCELVLSYTREILEETAPHLVD-SICVYRAGYVAEDRRRIE----------RDFF 580
L+ + E +++ +L++ I ++ + R++ ++
Sbjct: 435 VTLYPGTTLIFCNSIESVKKLNAYLINLGINSFQIHSSMTQKNRLKNLEKFEAMASKNNH 494
Query: 581 GGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYV 636
GK + A++ G+D+ I +H P S + ++GR+ R + +AV +
Sbjct: 495 LGKPTVLIASDVAARGLDIKGIKHVVHYHLPHSADTYIHRSGRTARGDNEGVAVMI 550
>sp|A3LP87|DBP8_PICST ATP-dependent RNA helicase DBP8 OS=Scheffersomyces stipitis (strain
ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545)
GN=DBP8 PE=3 SV=2
Length = 445
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 82/399 (20%), Positives = 144/399 (36%), Gaps = 50/399 (12%)
Query: 247 ALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHD-LSSSALY 305
AL + I + Q+ I L+G + + T SGK++ + P+L S D L
Sbjct: 15 ALAAMKIHTPTAIQSGCIPKILSGHDCIGGAKTGSGKTIAFAAPMLTQWSEDPFGIFGLV 74
Query: 306 MFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMS 365
+ PT+ LA A+ + + I + V G+ K + L+ +I P L
Sbjct: 75 LTPTRELALQIAEQFAALGASMNIKISV-VVGGEDFVKQTLELQKKPHFVIATPGRLADH 133
Query: 366 ILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRL 425
IL +S LR I +++V+DEA
Sbjct: 134 IL---NSGEETISGLRRI----------------KYLVLDEAD----------------- 157
Query: 426 CRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSC 485
RL S+ +G D FS + R+ C+ A ++ + P K P
Sbjct: 158 -RLLSNSFGGDLERCFSVLPPSEKRQTCLFTATVTDAVRALKEKPPAQGK------PPVF 210
Query: 486 LRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYT 545
L V Q + T + + SY+ + LR + +S + + + T
Sbjct: 211 LHEVETVDQVAIPSTLSIKY-----VFVPSYVKEAYLNSILRLPQYEKSTAVIFVNRTTT 265
Query: 546 REILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVT 605
E+L T L + + +R + F G + AT+ G+D+ +++
Sbjct: 266 AEVLRRTLRKLEFRVASLHSEMPQSERTNSVQRFKAGAARILIATDVASRGLDIPSVELV 325
Query: 606 LHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQ 644
++ P + GR+ R R AV + E +D+
Sbjct: 326 VNFDIPADPDDFIHRVGRTARAGRSGDAVTIIAEKDIDR 364
>sp|Q9H8H2|DDX31_HUMAN Probable ATP-dependent RNA helicase DDX31 OS=Homo sapiens GN=DDX31
PE=1 SV=2
Length = 851
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 95/214 (44%), Gaps = 20/214 (9%)
Query: 161 TYVKERRTDVRGNEVK--RARRSQSSTSSSHSFQRRCSDKSQLLPLEM-VEHLRKGIGSQ 217
T VKE + +GN K ++ STS + +R+C S L + L + + Q
Sbjct: 162 TSVKETQRTFKGNAQKMFSPKKHSVSTSDRNQEERQCIKTSSLFKNNPDIPELHRPVVKQ 221
Query: 218 GQMVHVEDISARKAVLVEIP--DALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVV 275
V++ A E+ L+ + LK +S + S Q +SI L G++ +V
Sbjct: 222 -----VQEKVFTSAAFHELGLHPHLISTINTVLK---MSSMTSVQKQSIPVLLEGRDALV 273
Query: 276 ATMTSSGKSLCYNLPV---LEALSHDLSSS----ALYMFPTKALAQDQLRALLAMTKAFD 328
+ T SGK+L Y +PV L+A+ + S AL + PT+ LA + + K F
Sbjct: 274 RSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLVPTRELALQSFDTVQKLLKPFT 333
Query: 329 ASIDIGVYDGDTTQKDRMWLRDNARLLITNPDML 362
+ + G+ + ++ LR +LI+ P L
Sbjct: 334 WIVPGVLMGGEKRKSEKARLRKGINILISTPGRL 367
>sp|A1DNF9|DBP4_NEOFI ATP-dependent RNA helicase dbp4 OS=Neosartorya fischeri (strain
ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dbp4
PE=3 SV=1
Length = 810
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 121/490 (24%), Positives = 183/490 (37%), Gaps = 97/490 (19%)
Query: 223 VEDISARKAV--LVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTS 280
VED+ ++ ++P L + T S L S+ L Q+ +I +L G++V+ A T
Sbjct: 37 VEDLDLKETFKSFSDLP--LSEPTASGLASSHYKTLTDIQSRAISHALKGRDVLGAAKTG 94
Query: 281 SGKSLCYNLPVLEAL------SHDLSSSALYMFPTKALAQDQLRALLAMTK--AFDASID 332
SGK+L + +PVLE L HD AL + PT+ LA L + + F A +
Sbjct: 95 SGKTLAFLVPVLENLYRKQWAEHD-GLGALILSPTRELAIQIFEVLRKIGRYHTFSAGLV 153
Query: 333 IGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEV 392
IG G + ++++ L L+ T ML H + + L L +
Sbjct: 154 IG---GKSLKEEQERLGRMNILVCTPGRMLQ------HLDQTALFDTYNLQMLVLDEADR 204
Query: 393 YLIFLFIRFVVIDEAHAYKGA----FGCHTALILRRLCRLCSHVYGSDPSF--VFSTATS 446
L F + V H K F + L RL DP + V TA+S
Sbjct: 205 ILDLGFQQTVDAIIGHLPKERQTLLFSATQTKKVSDLARLSLQ----DPEYVAVHETASS 260
Query: 447 ANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANK 506
A P + L +I +P QKL +LW S +RS L KS+T
Sbjct: 261 ATP-------SKLQQHYVI----TPLPQKLDILW---SFIRSNL-KSKT----------- 294
Query: 507 TSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSI-CVYRA 565
+ F S K V R HL I ++
Sbjct: 295 ----------------------MVFLSSGKQVRFVYESFR--------HLQPGIPLMHLH 324
Query: 566 GYVAEDRR-RIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624
G + R I F K C + +T+ G+D +D + L P + + GR+
Sbjct: 325 GRQKQGGRLDIVTRFSQSKHCVLFSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRT 384
Query: 625 GRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHPL 684
R ER AV F P ++ M + K PIE +I A + ++ L + P
Sbjct: 385 ARYEREGRAVL--FLDPSEEEGMLKRLEQKKVPIEKINIKANKQQSIKDQLQNMCFKDP- 441
Query: 685 SLIYDEKYFG 694
+ KY G
Sbjct: 442 ----ELKYLG 447
>sp|Q5UYM9|HELS_HALMA Putative ski2-type helicase OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rrnAC2876
PE=3 SV=1
Length = 799
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 72/130 (55%), Gaps = 13/130 (10%)
Query: 231 AVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLA-GKNVVVATMTSSGKSLCYNL 289
A L +P+ L D+ L+ GI +LY QAE++ A + G+N+V + T+SGK+L L
Sbjct: 4 ADLPGVPEWLPDH----LRDDGIEELYPPQAEAVEAGVTEGENLVASIPTASGKTLIAEL 59
Query: 290 PVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDA-SIDIGVYDGDTTQKDRMWL 348
+L +++ ALY+ P +ALA ++ A + F+ +DIGV G+ + + WL
Sbjct: 60 AMLSSVAR--GGKALYIVPLRALASEK----QADFEEFEQYGLDIGVSTGN-YESEGGWL 112
Query: 349 RDNARLLITN 358
D ++ T+
Sbjct: 113 ADKDIVVATS 122
>sp|Q465R3|HELS_METBF Putative ski2-type helicase OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=Mbar_A3508 PE=3 SV=1
Length = 729
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 57/106 (53%), Gaps = 6/106 (5%)
Query: 240 LLDNTKSALKSTGISKLYSHQAESIMASL-AGKNVVVATMTSSGKSLCYNLPVLEALSHD 298
L D K ++GI +LY QAE++ L G+N++ A T+SGK+L L +L+++
Sbjct: 8 LPDEVKQFYLNSGIMELYPPQAEAVEKGLLEGRNLLAAIPTASGKTLLAELAMLKSILA- 66
Query: 299 LSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKD 344
ALY+ P +ALA ++ R + + I +G+ GD +D
Sbjct: 67 -GGKALYIVPLRALASEKFRRFREFS---ELGIRVGISTGDYDLRD 108
>sp|Q0U6X2|MAK5_PHANO ATP-dependent RNA helicase MAK5 OS=Phaeosphaeria nodorum (strain
SN15 / ATCC MYA-4574 / FGSC 10173) GN=MAK5 PE=3 SV=1
Length = 817
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 72/165 (43%), Gaps = 32/165 (19%)
Query: 254 SKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEA---------LSHDLSSSAL 304
SK + QA +I +AG++V+ T SGK+L + +P++E+ D + AL
Sbjct: 270 SKPTTIQASTIPEIMAGRDVIGKASTGSGKTLAFGIPIIESYLASKSKSKDVKDKTPLAL 329
Query: 305 YMFPTKALAQDQLRALLAM--TKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDML 362
+ PT+ LA L A+ AF+A + V G QK R L + A +++ P L
Sbjct: 330 IIAPTRELAHQITAHLTALCAKGAFEAPLIASVTGGLAVQKQRRQL-EKADIIVGTPGRL 388
Query: 363 HMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEA 407
I HG ++ IRF+V+DEA
Sbjct: 389 WEVISTGHGLLEKVKQ--------------------IRFLVVDEA 413
>sp|Q2UHB7|DBP4_ASPOR ATP-dependent RNA helicase dbp4 OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=dbp4 PE=3 SV=1
Length = 796
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 121/520 (23%), Positives = 186/520 (35%), Gaps = 104/520 (20%)
Query: 180 RSQSSTSSSHSFQRRCSDKSQLLPLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDA 239
RS + SSH+ +R+ + + VE L DI ++P
Sbjct: 8 RSGKNAKSSHTLKRKRAQDDLSTLTQRVEDL--------------DIKETYKSFSDLP-- 51
Query: 240 LLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL---- 295
L + T S L S+ L Q+ +I +L G++++ A T SGK+L + +PVLE L
Sbjct: 52 LSEPTASGLASSHFKTLTDIQSRAIGHALKGRDILGAAKTGSGKTLAFLIPVLENLYRKQ 111
Query: 296 --SHDLSSSALYMFPTKALAQDQLRALLAMTK--AFDASIDIGVYDGDTTQKDRMWLRDN 351
HD AL + PT+ LA L + + F A + IG G + ++++ L
Sbjct: 112 WSEHD-GLGALILSPTRELAIQIFEVLRKIGRYHTFSAGLIIG---GKSLKEEQERLGRM 167
Query: 352 ARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYK 411
L+ T ML H + + L L + L F + V H K
Sbjct: 168 NILVCTPGRMLQ------HLDQTAMFDVFNLQMLVLDEADRILDMGFQKTVDAIVGHLPK 221
Query: 412 GA----FGCHTALILRRLCRLCSHVYGSDPSF--VFSTATSANPREHCMELANLSTLELI 465
F + L RL DP + V TA+SA P + L ++
Sbjct: 222 ERQTLLFSATQTKKVSDLARLSLQ----DPEYVAVHETASSATP-------STLQQHYVV 270
Query: 466 QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHG 525
+P +QKL VLW S +RS L
Sbjct: 271 ----TPLSQKLDVLW---SFIRSNLK---------------------------------- 289
Query: 526 LRCIAFCRSRKLCELVLSYTREILEETAPHLVDSI-CVYRAGYVAEDRR-RIERDFFGGK 583
+ I F S K V R HL I ++ G + R I F K
Sbjct: 290 AKTIVFLSSGKQVRFVYESFR--------HLQPGIPLMHLHGRQKQGGRLDITAKFSQAK 341
Query: 584 LCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLD 643
+ +T+ G+D +D + + P + + GR+ R ER AV F P +
Sbjct: 342 HAVLFSTDITARGLDFPAVDWVIQMDCPEDADTYIHRVGRTARYERDGRAVL--FLDPSE 399
Query: 644 QYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAALEHP 683
+ M + K PIE +I A + + L + P
Sbjct: 400 ESGMLKRLEQKKVPIERINIKANKQQSIRDQLQNMCFKDP 439
>sp|Q39189|RH7_ARATH DEAD-box ATP-dependent RNA helicase 7 OS=Arabidopsis thaliana
GN=RH7 PE=1 SV=2
Length = 671
Score = 50.1 bits (118), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 82/410 (20%), Positives = 161/410 (39%), Gaps = 90/410 (21%)
Query: 245 KSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEAL--------- 295
+ LK+ GI L+ QA + L G ++V T GK+L + LP+LE+L
Sbjct: 108 REKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKR 167
Query: 296 --SHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIG---VYDGDTTQKDRMWLRD 350
+ S S L + PT+ LA + + A A+ S+ + +Y GD+ L+
Sbjct: 168 KMGYGRSPSVLVLLPTRELA----KQVAADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKR 223
Query: 351 NARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEA-HA 409
+++ P + I + FS +++F V+DEA
Sbjct: 224 GVDIVVGTPGRIKDHIERQNLDFS-----------------------YLQFRVLDEADEM 260
Query: 410 YKGAFGCHTALILRRL---CRLCSHVYGSD-PSFVFSTATSANPREHCMELANLSTLELI 465
+ F LIL ++ ++ + ++ + PS+V + + R+ T++L+
Sbjct: 261 LRMGFVEDVELILGKVEDSTKVQTLLFSATLPSWVKNISNRFLKRDQ-------KTIDLV 313
Query: 466 QNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHG 525
ND + + + P C ++ + + D+ ++ +T +FAE
Sbjct: 314 GNDKMKASNSVRHIAIP--CNKAAMARLIPDIISCYSSGGQT--------IIFAE----- 358
Query: 526 LRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIE-RDFFGGKL 584
T+ + E + L S ++ G + + +R + F GK
Sbjct: 359 -------------------TKVQVSELSGLLDGSRALH--GEIPQSQREVTLAGFRNGKF 397
Query: 585 CGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAV 634
+ ATN G+D+ + + + P + + ++GR+GR +AV
Sbjct: 398 ATLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGNTGVAV 447
>sp|P38712|RRP3_YEAST ATP-dependent rRNA helicase RRP3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RRP3 PE=1 SV=2
Length = 501
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 93/389 (23%), Positives = 156/389 (40%), Gaps = 72/389 (18%)
Query: 247 ALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSS-SALY 305
A K+ SK Q+++I +L G +++ T SGK+ + +P+L L HD A
Sbjct: 95 ACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQEPYYACI 154
Query: 306 MFPTKALAQDQLRALLAMTKAFDASIDIGVYDG--DTTQKDRMWLRDNARLLITNPDMLH 363
+ PT+ LAQ + + FD+ +G G T M + D AR L+ P +
Sbjct: 155 LAPTRELAQQ-------IKETFDS---LGSLMGVRSTCIVGGMNMMDQARDLMRKPHI-- 202
Query: 364 MSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILR 423
I+ G+ L N + FSL ++F+V+DEA +L
Sbjct: 203 --IIATPGRLMDHLENTK--GFSLRK---------LKFLVMDEADRL---LDMEFGPVLD 246
Query: 424 RLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPT 483
R+ ++ + +++FS + S ++ +Q L NP
Sbjct: 247 RILKIIPTQERT--TYLFSATMT-------------SKIDKLQRAS---------LTNPV 282
Query: 484 SCLRSVLNKSQTDMDDTRNAANKTSSPISE--VSYLFAEMVQHGLRCIAFCRSRKLCELV 541
C +V NK QT +D + + YL E + G I F R++ E
Sbjct: 283 KC--AVSNKYQT-VDTLVQTLMVVPGGLKNTYLIYLLNEFI--GKTMIIFTRTKANAER- 336
Query: 542 LSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFF-GGKLCGVAATNALELGIDVG 600
LS +LE +A L G + +++R D F GK + AT+ G+D+
Sbjct: 337 LSGLCNLLEFSATAL--------HGDLNQNQRMGSLDLFKAGKRSILVATDVAARGLDIP 388
Query: 601 HIDVTLHLGFPGSIASLWQQAGRSGRRER 629
+D+ ++ P S + GR+ R R
Sbjct: 389 SVDIVVNYDIPVDSKSYIHRVGRTARAGR 417
>sp|A6ZSX1|RRP3_YEAS7 ATP-dependent rRNA helicase RRP3 OS=Saccharomyces cerevisiae
(strain YJM789) GN=RRP3 PE=3 SV=1
Length = 501
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 93/389 (23%), Positives = 156/389 (40%), Gaps = 72/389 (18%)
Query: 247 ALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSS-SALY 305
A K+ SK Q+++I +L G +++ T SGK+ + +P+L L HD A
Sbjct: 95 ACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQEPYYACI 154
Query: 306 MFPTKALAQDQLRALLAMTKAFDASIDIGVYDG--DTTQKDRMWLRDNARLLITNPDMLH 363
+ PT+ LAQ + + FD+ +G G T M + D AR L+ P +
Sbjct: 155 LAPTRELAQQ-------IKETFDS---LGSLMGVRSTCIVGGMNMMDQARDLMRKPHI-- 202
Query: 364 MSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILR 423
I+ G+ L N + FSL ++F+V+DEA +L
Sbjct: 203 --IIATPGRLMDHLENTK--GFSLRK---------LKFLVMDEADRL---LDMEFGPVLD 246
Query: 424 RLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPT 483
R+ ++ + +++FS + S ++ +Q L NP
Sbjct: 247 RILKIIPTQERT--TYLFSATMT-------------SKIDKLQRAS---------LTNPV 282
Query: 484 SCLRSVLNKSQTDMDDTRNAANKTSSPISE--VSYLFAEMVQHGLRCIAFCRSRKLCELV 541
C +V NK QT +D + + YL E + G I F R++ E
Sbjct: 283 KC--AVSNKYQT-VDTLVQTLMVVPGGLKNTYLIYLLNEFI--GKTMIIFTRTKANAER- 336
Query: 542 LSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFF-GGKLCGVAATNALELGIDVG 600
LS +LE +A L G + +++R D F GK + AT+ G+D+
Sbjct: 337 LSGLCNLLEFSATAL--------HGDLNQNQRMGALDLFKAGKRSILVATDVAARGLDIP 388
Query: 601 HIDVTLHLGFPGSIASLWQQAGRSGRRER 629
+D+ ++ P S + GR+ R R
Sbjct: 389 SVDIVVNYDIPVDSKSYIHRVGRTARAGR 417
>sp|Q5EAK4|TLH1_SCHPO ATP-dependent DNA helicase tlh1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=tlh1 PE=2 SV=1
Length = 2100
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 95/391 (24%), Positives = 154/391 (39%), Gaps = 81/391 (20%)
Query: 260 QAESIMASLAGK-NVVVATMTSSGKSLCYNLPVL-----EALSHDLSSSALYMFPTKALA 313
Q +S+ SL + N++ T GKSL + +P L + ++ L + P +L
Sbjct: 1376 QFQSVYFSLLNRMNLITVLPTGGGKSLSFLIPALIEKKRQTPGKVMNMVTLVLVPMMSLR 1435
Query: 314 QDQL-----RALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILP 368
QD + + LL + + A D+ R+ L PD+ IL
Sbjct: 1436 QDMMLRVNEKGLLVCSGNWTAFKDV-----------RLTLETQL------PDLF---ILT 1475
Query: 369 YHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRL 428
Y + S LR SL T + VVIDEAH + TAL R RL
Sbjct: 1476 YESALTN--SGLRFFE-SLATLGR------LARVVIDEAHLLLTSGAWRTAL--SRASRL 1524
Query: 429 CSHVYGSDPSFVFSTATSANPREHCMELANLSTL---ELIQNDGSPCAQKLFVLWNPTSC 485
S +Y P + S + PR+ +E+ T + + S + +F +P
Sbjct: 1525 -SGLYA--PLHLLS---ATFPRQ--LEMVARQTFCTNFYVLRETSTARENIFYFLHPYDN 1576
Query: 486 LRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYT 545
+L D R +T ++ + R I FCR++K E Y
Sbjct: 1577 TEFLL--------DLRTLMKRT------------KVFEGDGRAIIFCRTKKDVE----YI 1612
Query: 546 REILEETAPHLVDSICVYRAGYVAEDRRRIERDFF---GGKLCGVAATNALELGIDVGHI 602
L ++ + +Y G V+++ R++ D F GK + AT A LGI+ +
Sbjct: 1613 HRRLHQSDLFAHTHVTIY-TGDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGV 1671
Query: 603 DVTLHLGFPGSIASLWQQAGRSGRRERPSLA 633
+ +H G P S Q+ GR+GR + ++A
Sbjct: 1672 RLVVHYGLPASSMDYVQETGRAGRDGKYAIA 1702
>sp|O93530|WRN_XENLA Werner syndrome ATP-dependent helicase homolog OS=Xenopus laevis
GN=wrn PE=2 SV=1
Length = 1436
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 8/103 (7%)
Query: 529 IAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVA 588
I +C +RK E V T E+++ L + Y AG + RR + F ++ V
Sbjct: 711 IVYCPTRKTSEQV---TAELIK-----LGIACGTYHAGMGIKQRREVHHRFMRDEIHCVV 762
Query: 589 ATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPS 631
AT A +GI+ I +H G P + S +Q+ GR+GR PS
Sbjct: 763 ATVAFGMGINKPDIRKVIHYGAPKEMESYYQEIGRAGRDGLPS 805
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 338,869,066
Number of Sequences: 539616
Number of extensions: 13768366
Number of successful extensions: 38286
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 375
Number of HSP's that attempted gapping in prelim test: 37220
Number of HSP's gapped (non-prelim): 1434
length of query: 961
length of database: 191,569,459
effective HSP length: 127
effective length of query: 834
effective length of database: 123,038,227
effective search space: 102613881318
effective search space used: 102613881318
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 66 (30.0 bits)