Query 002135
Match_columns 961
No_of_seqs 591 out of 3794
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 13:49:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002135.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002135hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 6.6E-49 2.2E-53 457.5 40.1 350 221-640 46-407 (434)
2 3i5x_A ATP-dependent RNA helic 100.0 4.4E-46 1.5E-50 447.9 39.1 389 231-672 68-479 (563)
3 2p6r_A Afuhel308 helicase; pro 100.0 8.2E-47 2.8E-51 465.7 32.0 424 232-713 2-471 (702)
4 3sqw_A ATP-dependent RNA helic 100.0 5.8E-46 2E-50 448.3 38.7 390 227-669 13-425 (579)
5 2i4i_A ATP-dependent RNA helic 100.0 2.8E-46 9.6E-51 431.5 34.0 355 222-640 6-383 (417)
6 2j0s_A ATP-dependent RNA helic 100.0 3E-46 1E-50 430.8 33.7 365 230-666 36-407 (410)
7 2zj8_A DNA helicase, putative 100.0 5.4E-46 1.8E-50 459.7 36.0 419 232-714 2-474 (720)
8 2va8_A SSO2462, SKI2-type heli 100.0 3E-45 1E-49 452.9 39.3 429 231-714 8-490 (715)
9 1xti_A Probable ATP-dependent 100.0 5.2E-45 1.8E-49 417.0 36.0 368 231-666 8-382 (391)
10 1s2m_A Putative ATP-dependent 100.0 1.3E-44 4.4E-49 415.5 39.1 365 229-665 19-388 (400)
11 3eiq_A Eukaryotic initiation f 100.0 1.7E-45 5.9E-50 424.2 30.4 368 227-666 36-411 (414)
12 1hv8_A Putative ATP-dependent 100.0 3.5E-44 1.2E-48 405.6 39.4 357 230-661 5-364 (367)
13 3fht_A ATP-dependent RNA helic 100.0 1.4E-44 4.9E-49 416.0 36.0 363 231-664 25-402 (412)
14 3pey_A ATP-dependent RNA helic 100.0 7.9E-44 2.7E-48 406.8 40.5 370 230-674 4-388 (395)
15 2v1x_A ATP-dependent DNA helic 100.0 1.1E-44 3.8E-49 435.5 34.5 346 228-638 16-372 (591)
16 1oyw_A RECQ helicase, ATP-depe 100.0 3.3E-44 1.1E-48 426.7 36.6 334 231-639 2-342 (523)
17 1fuu_A Yeast initiation factor 100.0 3E-45 1E-49 419.1 20.2 367 226-663 16-387 (394)
18 2z0m_A 337AA long hypothetical 100.0 3.9E-43 1.3E-47 392.6 34.5 331 240-653 1-333 (337)
19 3fmp_B ATP-dependent RNA helic 100.0 1.3E-44 4.5E-49 426.5 18.9 362 232-662 93-467 (479)
20 4f92_B U5 small nuclear ribonu 100.0 1.7E-42 6E-47 455.6 39.0 359 240-641 911-1309(1724)
21 4f92_B U5 small nuclear ribonu 100.0 3.3E-42 1.1E-46 453.0 36.3 347 252-645 76-478 (1724)
22 2xgj_A ATP-dependent RNA helic 100.0 6.2E-42 2.1E-46 432.7 32.0 373 218-640 54-499 (1010)
23 3oiy_A Reverse gyrase helicase 100.0 3.5E-41 1.2E-45 389.7 33.3 349 242-672 8-395 (414)
24 3l9o_A ATP-dependent RNA helic 100.0 1.6E-41 5.5E-46 432.5 30.5 366 230-642 161-599 (1108)
25 3fho_A ATP-dependent RNA helic 100.0 9E-43 3.1E-47 413.7 15.0 370 224-663 110-492 (508)
26 3tbk_A RIG-I helicase domain; 100.0 3.7E-40 1.3E-44 393.9 24.5 360 255-642 4-509 (555)
27 4a2p_A RIG-I, retinoic acid in 100.0 1.9E-40 6.4E-45 397.0 21.9 364 252-643 4-511 (556)
28 2ykg_A Probable ATP-dependent 100.0 4.8E-40 1.6E-44 405.2 23.0 364 245-640 3-516 (696)
29 4a4z_A Antiviral helicase SKI2 100.0 3.7E-38 1.3E-42 398.3 30.9 351 250-645 35-497 (997)
30 4a2q_A RIG-I, retinoic acid in 100.0 8.7E-39 3E-43 399.3 24.8 366 250-643 243-752 (797)
31 1wp9_A ATP-dependent RNA helic 100.0 8.4E-38 2.9E-42 365.3 28.4 350 255-647 9-482 (494)
32 4gl2_A Interferon-induced heli 100.0 4.4E-39 1.5E-43 396.7 18.1 358 255-638 7-517 (699)
33 4ddu_A Reverse gyrase; topoiso 100.0 1.2E-36 4.2E-41 387.5 34.2 352 243-676 66-526 (1104)
34 4a2w_A RIG-I, retinoic acid in 100.0 7E-38 2.4E-42 395.7 21.4 366 250-643 243-752 (936)
35 1gku_B Reverse gyrase, TOP-RG; 100.0 2.4E-37 8.1E-42 394.2 22.7 354 243-677 45-490 (1054)
36 1gm5_A RECG; helicase, replica 100.0 3.5E-37 1.2E-41 378.3 20.6 323 242-638 356-695 (780)
37 2xau_A PRE-mRNA-splicing facto 100.0 1E-36 3.5E-41 376.3 22.2 408 229-715 70-509 (773)
38 1tf5_A Preprotein translocase 100.0 2.5E-35 8.7E-40 355.2 29.9 349 250-640 79-545 (844)
39 2eyq_A TRCF, transcription-rep 100.0 1.9E-34 6.4E-39 369.7 37.3 318 242-639 590-921 (1151)
40 2oca_A DAR protein, ATP-depend 100.0 2.4E-35 8.1E-40 350.2 21.2 328 254-638 112-453 (510)
41 2whx_A Serine protease/ntpase/ 100.0 4.2E-36 1.4E-40 362.2 10.4 313 240-652 157-491 (618)
42 2fsf_A Preprotein translocase 100.0 8.8E-34 3E-38 340.8 26.9 349 250-640 70-583 (853)
43 2jlq_A Serine protease subunit 100.0 5.5E-35 1.9E-39 341.6 14.5 287 252-638 1-309 (451)
44 2fwr_A DNA repair protein RAD2 100.0 8.8E-34 3E-38 333.4 24.6 318 255-647 93-461 (472)
45 1yks_A Genome polyprotein [con 100.0 4.9E-35 1.7E-39 340.7 13.7 290 266-654 4-314 (440)
46 2wv9_A Flavivirin protease NS2 100.0 3.4E-35 1.2E-39 356.5 8.5 306 247-651 202-545 (673)
47 1nkt_A Preprotein translocase 100.0 9.3E-33 3.2E-37 332.0 29.1 349 250-640 107-617 (922)
48 2z83_A Helicase/nucleoside tri 100.0 5.4E-33 1.9E-37 325.3 17.5 278 264-640 15-313 (459)
49 3o8b_A HCV NS3 protease/helica 100.0 7.4E-34 2.5E-38 340.1 10.2 279 255-642 217-516 (666)
50 3h1t_A Type I site-specific re 100.0 2.8E-31 9.5E-36 320.9 27.4 333 255-629 178-545 (590)
51 2v6i_A RNA helicase; membrane, 100.0 4.9E-32 1.7E-36 314.8 17.1 270 269-637 1-287 (431)
52 3rc3_A ATP-dependent RNA helic 100.0 8.4E-31 2.9E-35 317.2 22.5 274 263-636 148-441 (677)
53 3dmq_A RNA polymerase-associat 100.0 4.9E-29 1.7E-33 315.6 25.3 353 255-651 153-626 (968)
54 1z63_A Helicase of the SNF2/RA 100.0 1.2E-28 4E-33 291.8 25.2 338 255-647 37-460 (500)
55 3fe2_A Probable ATP-dependent 100.0 6.5E-29 2.2E-33 265.9 20.7 217 204-458 5-230 (242)
56 3iuy_A Probable ATP-dependent 99.9 2.4E-27 8.1E-32 251.1 18.4 192 224-450 12-212 (228)
57 3jux_A Protein translocase sub 99.9 6.8E-26 2.3E-30 267.0 30.7 333 250-640 71-587 (822)
58 2pl3_A Probable ATP-dependent 99.9 9.9E-27 3.4E-31 247.7 21.4 210 203-454 5-220 (236)
59 3ly5_A ATP-dependent RNA helic 99.9 4.4E-27 1.5E-31 255.0 17.9 194 230-455 51-251 (262)
60 2oxc_A Probable ATP-dependent 99.9 1.6E-26 5.4E-31 245.4 21.7 192 224-449 17-211 (230)
61 1vec_A ATP-dependent RNA helic 99.9 3E-26 1E-30 238.4 21.0 186 231-450 3-191 (206)
62 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 6.4E-26 2.2E-30 285.3 26.6 341 255-640 271-707 (1038)
63 3mwy_W Chromo domain-containin 99.9 8.4E-26 2.9E-30 281.6 27.5 349 255-652 236-696 (800)
64 3dkp_A Probable ATP-dependent 99.9 1.3E-26 4.4E-31 248.3 17.3 214 207-450 4-224 (245)
65 1q0u_A Bstdead; DEAD protein, 99.9 2.6E-26 8.8E-31 241.7 19.2 195 231-458 4-204 (219)
66 3bor_A Human initiation factor 99.9 2.2E-26 7.5E-31 245.5 18.8 200 224-458 23-227 (237)
67 1z3i_X Similar to RAD54-like; 99.9 5.3E-25 1.8E-29 268.0 33.4 348 255-649 55-537 (644)
68 1qde_A EIF4A, translation init 99.9 3.5E-26 1.2E-30 241.2 20.0 199 225-458 8-209 (224)
69 1wrb_A DJVLGB; RNA helicase, D 99.9 1.6E-26 5.5E-31 248.8 17.3 206 221-457 11-231 (253)
70 3ber_A Probable ATP-dependent 99.9 6.9E-26 2.4E-30 243.7 20.5 194 230-457 42-239 (249)
71 3fmo_B ATP-dependent RNA helic 99.9 3.1E-26 1.1E-30 253.1 18.1 189 231-454 92-285 (300)
72 1t6n_A Probable ATP-dependent 99.9 1.3E-25 4.5E-30 236.2 20.6 196 230-457 13-212 (220)
73 2gxq_A Heat resistant RNA depe 99.9 1.2E-25 3.9E-30 234.0 19.8 190 232-458 2-198 (207)
74 1c4o_A DNA nucleotide excision 99.9 4.9E-23 1.7E-27 250.7 33.8 119 512-639 426-549 (664)
75 2d7d_A Uvrabc system protein B 99.9 1.3E-21 4.5E-26 238.1 32.5 120 512-640 432-556 (661)
76 2ipc_A Preprotein translocase 99.9 1E-20 3.5E-25 226.9 32.0 138 250-411 75-215 (997)
77 3eaq_A Heat resistant RNA depe 99.9 3.1E-21 1.1E-25 202.2 20.8 159 508-679 16-174 (212)
78 1t5i_A C_terminal domain of A 99.9 1.6E-21 5.5E-26 197.6 14.7 145 510-665 18-162 (172)
79 2hjv_A ATP-dependent RNA helic 99.9 6.9E-21 2.4E-25 191.1 18.2 140 509-660 21-160 (163)
80 3i32_A Heat resistant RNA depe 99.8 8.7E-21 3E-25 208.7 18.2 161 508-681 13-173 (300)
81 1fuk_A Eukaryotic initiation f 99.8 9E-21 3.1E-25 190.6 16.5 144 510-665 17-160 (165)
82 2rb4_A ATP-dependent RNA helic 99.8 9.2E-21 3.2E-25 192.4 16.1 130 525-664 34-169 (175)
83 2p6n_A ATP-dependent RNA helic 99.8 3.6E-20 1.2E-24 190.9 15.4 129 517-654 46-174 (191)
84 3b6e_A Interferon-induced heli 99.8 1.5E-20 5.2E-25 196.1 11.1 173 251-445 29-216 (216)
85 2jgn_A DBX, DDX3, ATP-dependen 99.8 3.4E-20 1.2E-24 190.1 12.8 135 510-655 32-166 (185)
86 2vl7_A XPD; helicase, unknown 99.8 3.2E-19 1.1E-23 212.7 22.3 67 251-323 4-74 (540)
87 2yjt_D ATP-dependent RNA helic 99.7 3.3E-21 1.1E-25 194.7 0.0 131 524-664 29-159 (170)
88 1rif_A DAR protein, DNA helica 99.8 8.9E-19 3E-23 191.5 13.9 162 255-458 113-274 (282)
89 3llm_A ATP-dependent RNA helic 99.8 6.7E-19 2.3E-23 187.4 9.9 177 242-456 48-227 (235)
90 3crv_A XPD/RAD3 related DNA he 99.8 1.7E-16 6E-21 189.6 31.5 79 252-338 1-83 (551)
91 2fz4_A DNA repair protein RAD2 99.7 4.2E-16 1.5E-20 166.0 16.1 139 255-450 93-232 (237)
92 4a15_A XPD helicase, ATP-depen 99.6 2.8E-14 9.5E-19 172.3 27.4 72 255-327 3-78 (620)
93 1z5z_A Helicase of the SNF2/RA 99.6 6.3E-15 2.2E-19 159.9 13.1 134 508-648 95-232 (271)
94 2zxx_C DNA replication factor 99.1 8.1E-11 2.8E-15 120.4 8.5 73 8-82 23-95 (197)
95 1w36_D RECD, exodeoxyribonucle 98.1 4.8E-06 1.6E-10 100.3 10.1 86 243-328 136-224 (608)
96 1wlq_C CDT1 protein; coiled-co 97.8 3.6E-05 1.2E-09 77.2 7.6 72 9-82 28-99 (201)
97 2gk6_A Regulator of nonsense t 97.5 0.00055 1.9E-08 82.6 13.6 70 253-323 178-247 (624)
98 2xzl_A ATP-dependent helicase 97.3 0.00095 3.2E-08 82.6 12.8 70 253-323 358-427 (802)
99 2wjy_A Regulator of nonsense t 97.2 0.0011 3.8E-08 81.9 12.2 70 253-323 354-423 (800)
100 2wvr_C DNA replication factor 97.2 0.00049 1.7E-08 79.5 7.5 71 11-83 184-254 (546)
101 3upu_A ATP-dependent DNA helic 97.1 0.0011 3.7E-08 77.0 9.7 71 249-320 19-94 (459)
102 2o0j_A Terminase, DNA packagin 97.0 0.0046 1.6E-07 69.6 13.2 74 255-328 163-236 (385)
103 3e1s_A Exodeoxyribonuclease V, 96.9 0.0013 4.4E-08 78.4 8.7 62 255-318 189-250 (574)
104 3cpe_A Terminase, DNA packagin 96.7 0.013 4.5E-07 70.1 14.5 74 255-328 163-236 (592)
105 3lfu_A DNA helicase II; SF1 he 96.4 0.0048 1.6E-07 74.5 8.2 83 254-338 8-92 (647)
106 3hgt_A HDA1 complex subunit 3; 96.2 0.056 1.9E-06 59.0 14.7 148 507-677 107-264 (328)
107 4b3f_X DNA-binding protein smu 95.9 0.014 4.8E-07 70.6 9.0 67 255-323 189-256 (646)
108 1pjr_A PCRA; DNA repair, DNA r 95.7 0.014 5E-07 71.5 8.4 83 254-338 10-94 (724)
109 1uaa_A REP helicase, protein ( 95.3 0.014 4.9E-07 70.8 6.1 83 255-339 2-87 (673)
110 2kjq_A DNAA-related protein; s 94.6 0.071 2.4E-06 51.6 7.6 19 269-287 35-53 (149)
111 3ec2_A DNA replication protein 94.3 0.31 1.1E-05 48.1 12.0 32 257-288 16-56 (180)
112 3u4q_A ATP-dependent helicase/ 94.1 0.063 2.1E-06 69.7 8.0 68 255-324 10-81 (1232)
113 2q6t_A DNAB replication FORK h 93.7 0.74 2.5E-05 52.7 15.2 144 269-445 199-362 (444)
114 1gm5_A RECG; helicase, replica 93.5 0.27 9.2E-06 60.5 11.5 87 520-610 412-499 (780)
115 2orw_A Thymidine kinase; TMTK, 92.9 0.11 3.7E-06 52.1 5.6 40 269-310 2-41 (184)
116 1a5t_A Delta prime, HOLB; zinc 92.7 0.31 1.1E-05 53.6 9.7 37 256-292 3-46 (334)
117 3te6_A Regulatory protein SIR3 92.2 1.1 3.7E-05 49.0 12.8 46 400-452 134-179 (318)
118 3bos_A Putative DNA replicatio 92.1 0.62 2.1E-05 47.6 10.4 20 269-288 51-70 (242)
119 2z4s_A Chromosomal replication 92.0 0.69 2.3E-05 53.0 11.6 39 270-308 130-168 (440)
120 2dr3_A UPF0273 protein PH0284; 91.8 0.83 2.8E-05 47.1 11.1 38 269-308 22-59 (247)
121 1l8q_A Chromosomal replication 91.6 0.91 3.1E-05 49.3 11.6 36 270-307 37-72 (324)
122 2r6a_A DNAB helicase, replicat 91.5 1.5 5.2E-05 50.2 13.9 43 399-444 314-362 (454)
123 2w0m_A SSO2452; RECA, SSPF, un 91.4 1.2 4E-05 45.3 11.6 45 399-446 122-168 (235)
124 4a1f_A DNAB helicase, replicat 90.6 0.31 1.1E-05 53.8 6.5 149 269-445 45-205 (338)
125 2p65_A Hypothetical protein PF 90.4 2.8 9.6E-05 40.5 12.9 19 270-288 43-61 (187)
126 3syl_A Protein CBBX; photosynt 90.3 0.73 2.5E-05 49.5 9.2 19 270-288 67-85 (309)
127 1cr0_A DNA primase/helicase; R 90.2 0.94 3.2E-05 48.5 9.9 44 399-445 148-196 (296)
128 2iut_A DNA translocase FTSK; n 89.8 0.99 3.4E-05 53.0 10.2 40 270-309 214-255 (574)
129 2cvh_A DNA repair and recombin 89.5 1.3 4.4E-05 44.7 9.8 35 269-308 19-53 (220)
130 2v1u_A Cell division control p 89.5 2.2 7.4E-05 47.0 12.6 20 269-288 43-62 (387)
131 2chg_A Replication factor C sm 89.0 1.1 3.9E-05 44.7 8.9 17 271-287 39-55 (226)
132 3bh0_A DNAB-like replicative h 89.0 3.6 0.00012 44.6 13.5 43 400-445 181-230 (315)
133 2zpa_A Uncharacterized protein 89.0 0.58 2E-05 56.0 7.5 55 255-314 175-231 (671)
134 2qby_B CDC6 homolog 3, cell di 88.9 1.2 4.1E-05 49.3 9.8 19 270-288 45-63 (384)
135 3eie_A Vacuolar protein sortin 88.1 2.3 7.8E-05 46.2 11.2 19 270-288 51-69 (322)
136 1fnn_A CDC6P, cell division co 87.9 2.4 8.1E-05 46.8 11.4 35 272-307 46-80 (389)
137 2j9r_A Thymidine kinase; TK1, 87.6 1.3 4.4E-05 45.4 8.1 39 270-310 28-66 (214)
138 2zts_A Putative uncharacterize 87.5 1.5 5.2E-05 45.0 9.0 43 399-444 136-180 (251)
139 2eyq_A TRCF, transcription-rep 87.5 2.1 7.2E-05 55.0 11.9 85 521-609 648-733 (1151)
140 3e2i_A Thymidine kinase; Zn-bi 87.3 1.3 4.6E-05 45.3 8.0 40 269-310 27-66 (219)
141 2qby_A CDC6 homolog 1, cell di 86.7 2.9 9.8E-05 45.9 11.2 20 270-289 45-64 (386)
142 2ius_A DNA translocase FTSK; n 86.4 1.7 5.8E-05 50.5 9.2 41 269-309 166-207 (512)
143 1q57_A DNA primase/helicase; d 86.3 2.5 8.6E-05 49.0 10.8 51 269-321 241-291 (503)
144 1nlf_A Regulatory protein REPA 86.2 1.9 6.6E-05 45.7 9.0 45 399-446 134-181 (279)
145 1n0w_A DNA repair protein RAD5 86.1 3.9 0.00013 41.8 11.2 40 269-308 23-66 (243)
146 1d2n_A N-ethylmaleimide-sensit 86.0 3.7 0.00013 43.2 11.1 18 271-288 65-82 (272)
147 1xwi_A SKD1 protein; VPS4B, AA 85.8 1.2 4.2E-05 48.5 7.3 18 271-288 46-63 (322)
148 2qp9_X Vacuolar protein sortin 85.1 2.1 7.2E-05 47.3 9.0 19 270-288 84-102 (355)
149 2z43_A DNA repair and recombin 85.0 5.3 0.00018 43.4 12.0 42 269-310 106-151 (324)
150 3vfd_A Spastin; ATPase, microt 84.9 3 0.0001 46.6 10.2 19 270-288 148-166 (389)
151 3cmu_A Protein RECA, recombina 84.7 3 0.0001 55.9 11.3 48 263-312 1414-1467(2050)
152 3oiy_A Reverse gyrase helicase 84.5 2.6 8.8E-05 47.2 9.5 82 523-609 62-147 (414)
153 3h4m_A Proteasome-activating n 83.9 6.8 0.00023 41.2 12.1 19 269-287 50-68 (285)
154 3bgw_A DNAB-like replicative h 83.5 2.8 9.6E-05 47.9 9.3 44 399-445 309-359 (444)
155 1xp8_A RECA protein, recombina 83.3 3.6 0.00012 45.7 9.8 39 269-309 73-111 (366)
156 1sxj_A Activator 1 95 kDa subu 82.2 2.7 9.2E-05 49.0 8.6 18 271-288 78-95 (516)
157 4ddu_A Reverse gyrase; topoiso 81.5 3.2 0.00011 53.0 9.6 84 520-609 116-204 (1104)
158 1iqp_A RFCS; clamp loader, ext 81.2 3.2 0.00011 44.5 8.3 17 272-288 48-64 (327)
159 3t15_A Ribulose bisphosphate c 80.6 7.3 0.00025 41.6 10.7 18 271-288 37-54 (293)
160 1u94_A RECA protein, recombina 80.6 5.1 0.00018 44.3 9.7 39 269-309 62-100 (356)
161 2i1q_A DNA repair and recombin 80.4 10 0.00035 40.9 12.0 25 269-293 97-121 (322)
162 3vkw_A Replicase large subunit 80.1 1.2 4.1E-05 50.7 4.4 44 272-322 163-206 (446)
163 2gno_A DNA polymerase III, gam 79.9 3.7 0.00013 44.4 8.1 17 272-288 20-36 (305)
164 2zr9_A Protein RECA, recombina 79.7 4.3 0.00015 44.8 8.7 39 269-309 60-98 (349)
165 1v5w_A DMC1, meiotic recombina 79.4 7.8 0.00027 42.5 10.7 42 269-310 121-166 (343)
166 3u61_B DNA polymerase accessor 78.8 3.8 0.00013 44.2 7.8 12 400-411 107-118 (324)
167 1sxj_B Activator 1 37 kDa subu 78.6 3.2 0.00011 44.4 7.2 17 272-288 44-60 (323)
168 2zan_A Vacuolar protein sortin 78.6 2.5 8.5E-05 48.3 6.6 19 270-288 167-185 (444)
169 3d8b_A Fidgetin-like protein 1 78.1 10 0.00034 41.8 11.2 20 269-288 116-135 (357)
170 2ehv_A Hypothetical protein PH 77.7 11 0.00036 38.5 10.7 24 268-291 28-51 (251)
171 1w5s_A Origin recognition comp 77.4 8.4 0.00029 42.7 10.5 18 271-288 51-70 (412)
172 3co5_A Putative two-component 77.0 1.8 6.2E-05 40.9 4.1 21 267-287 24-44 (143)
173 1sxj_E Activator 1 40 kDa subu 76.4 5.6 0.00019 43.3 8.4 18 271-288 37-54 (354)
174 3hu3_A Transitional endoplasmi 76.0 11 0.00036 43.6 10.9 19 270-288 238-256 (489)
175 3n70_A Transport activator; si 75.5 1.8 6.1E-05 41.0 3.6 21 268-288 22-42 (145)
176 1gku_B Reverse gyrase, TOP-RG; 74.6 7.7 0.00026 49.3 10.0 91 516-608 90-182 (1054)
177 3hr8_A Protein RECA; alpha and 74.5 9.6 0.00033 42.1 9.6 42 269-312 60-101 (356)
178 4b4t_J 26S protease regulatory 74.3 15 0.00052 41.2 11.2 18 270-287 182-199 (405)
179 1p9r_A General secretion pathw 73.4 4.3 0.00015 46.0 6.6 31 257-287 152-184 (418)
180 3dm5_A SRP54, signal recogniti 72.6 16 0.00053 41.6 10.9 50 271-322 101-152 (443)
181 2oap_1 GSPE-2, type II secreti 72.6 6 0.0002 46.0 7.7 38 247-286 238-276 (511)
182 3lda_A DNA repair protein RAD5 71.8 24 0.00082 39.5 12.2 40 269-308 177-220 (400)
183 3kl4_A SRP54, signal recogniti 70.8 21 0.00073 40.4 11.5 49 270-320 97-147 (433)
184 1e9r_A Conjugal transfer prote 70.7 3.9 0.00013 46.3 5.5 44 269-314 52-95 (437)
185 1vma_A Cell division protein F 70.4 42 0.0014 36.0 13.3 49 269-319 103-153 (306)
186 3fe2_A Probable ATP-dependent 70.0 16 0.00056 37.3 9.7 75 524-606 101-181 (242)
187 3cmw_A Protein RECA, recombina 68.1 12 0.0004 49.7 9.6 37 270-308 732-768 (1706)
188 1xx6_A Thymidine kinase; NESG, 67.6 4.1 0.00014 40.8 4.3 40 269-310 7-46 (191)
189 4b4t_K 26S protease regulatory 67.1 36 0.0012 38.4 12.4 18 270-287 206-223 (428)
190 3jvv_A Twitching mobility prot 66.9 7.8 0.00027 42.8 6.7 20 268-287 121-140 (356)
191 2b8t_A Thymidine kinase; deoxy 66.7 4.2 0.00014 41.9 4.2 40 269-310 11-50 (223)
192 1qvr_A CLPB protein; coiled co 66.6 17 0.00057 45.1 10.4 119 261-443 180-306 (854)
193 2w58_A DNAI, primosome compone 66.4 7.1 0.00024 38.7 5.8 34 271-306 55-88 (202)
194 2p6n_A ATP-dependent RNA helic 66.4 17 0.00058 36.0 8.6 56 298-359 52-112 (191)
195 3ly5_A ATP-dependent RNA helic 66.1 30 0.001 35.9 10.9 75 524-606 125-206 (262)
196 2gza_A Type IV secretion syste 65.3 5 0.00017 44.4 4.8 20 267-286 172-191 (361)
197 2qgz_A Helicase loader, putati 65.1 7.9 0.00027 41.7 6.2 36 270-307 152-188 (308)
198 2rb4_A ATP-dependent RNA helic 65.0 16 0.00054 35.4 7.9 56 298-359 32-92 (175)
199 2hjv_A ATP-dependent RNA helic 63.3 14 0.00049 35.3 7.1 54 299-358 34-92 (163)
200 3b85_A Phosphate starvation-in 63.2 6.6 0.00023 39.8 4.9 36 253-288 5-40 (208)
201 1t5i_A C_terminal domain of A 61.9 19 0.00064 34.9 7.8 70 280-359 15-89 (172)
202 2pt7_A CAG-ALFA; ATPase, prote 59.9 5.6 0.00019 43.5 3.8 20 267-286 168-187 (330)
203 4ag6_A VIRB4 ATPase, type IV s 59.7 7.5 0.00026 43.3 5.0 42 268-311 33-74 (392)
204 3bor_A Human initiation factor 59.5 19 0.00065 36.7 7.7 61 524-591 97-157 (237)
205 3cmw_A Protein RECA, recombina 59.3 18 0.0006 48.0 8.9 45 270-316 1431-1475(1706)
206 1fuk_A Eukaryotic initiation f 59.1 19 0.00066 34.4 7.3 55 299-359 29-88 (165)
207 2pl3_A Probable ATP-dependent 58.6 24 0.00081 35.7 8.3 59 524-591 96-154 (236)
208 3hjh_A Transcription-repair-co 58.6 9.9 0.00034 43.8 5.8 88 269-366 13-117 (483)
209 4akg_A Glutathione S-transfera 58.5 11 0.00037 52.4 6.9 51 239-290 889-943 (2695)
210 1t6n_A Probable ATP-dependent 58.3 37 0.0013 33.8 9.6 77 525-607 82-164 (220)
211 3ber_A Probable ATP-dependent 58.2 62 0.0021 33.1 11.5 75 525-607 111-192 (249)
212 1ypw_A Transitional endoplasmi 58.1 39 0.0013 41.5 11.4 19 269-287 237-255 (806)
213 1jbk_A CLPB protein; beta barr 57.9 6.2 0.00021 38.0 3.5 19 270-288 43-61 (195)
214 1w36_B RECB, exodeoxyribonucle 57.5 12 0.0004 48.3 6.8 56 269-325 16-81 (1180)
215 1kgd_A CASK, peripheral plasma 56.8 4.9 0.00017 39.4 2.5 20 268-287 3-22 (180)
216 2v1x_A ATP-dependent DNA helic 56.5 24 0.00081 41.7 8.8 76 524-607 83-171 (591)
217 3cmu_A Protein RECA, recombina 56.5 33 0.0011 46.2 10.7 40 269-310 382-421 (2050)
218 1oyw_A RECQ helicase, ATP-depe 56.3 29 0.00098 40.3 9.4 75 524-606 64-144 (523)
219 2gxq_A Heat resistant RNA depe 55.6 30 0.001 33.9 8.3 58 524-591 71-128 (207)
220 3eaq_A Heat resistant RNA depe 55.5 23 0.00078 35.6 7.4 55 299-359 30-89 (212)
221 2oxc_A Probable ATP-dependent 54.8 30 0.001 34.9 8.2 59 525-591 92-150 (230)
222 2r44_A Uncharacterized protein 54.4 6.7 0.00023 42.4 3.3 23 266-288 42-64 (331)
223 2eyu_A Twitching motility prot 53.8 5.8 0.0002 41.8 2.5 21 267-287 22-42 (261)
224 2bjv_A PSP operon transcriptio 53.6 8 0.00027 40.3 3.7 21 268-288 27-47 (265)
225 3a8t_A Adenylate isopentenyltr 53.6 5.8 0.0002 43.4 2.6 18 270-287 40-57 (339)
226 1wrb_A DJVLGB; RNA helicase, D 53.2 40 0.0014 34.4 9.0 59 525-591 100-158 (253)
227 3vkg_A Dynein heavy chain, cyt 52.9 20 0.00069 50.4 8.2 50 239-289 872-925 (3245)
228 2ewv_A Twitching motility prot 52.9 6.6 0.00023 43.6 3.0 20 268-287 134-153 (372)
229 3cf2_A TER ATPase, transitiona 52.7 44 0.0015 40.9 10.4 17 271-287 239-255 (806)
230 1vec_A ATP-dependent RNA helic 52.1 44 0.0015 32.7 8.8 60 525-591 71-130 (206)
231 3exa_A TRNA delta(2)-isopenten 51.8 5.5 0.00019 43.2 2.0 18 270-287 3-20 (322)
232 3hws_A ATP-dependent CLP prote 51.5 13 0.00044 40.8 5.1 20 269-288 50-69 (363)
233 1q0u_A Bstdead; DEAD protein, 51.3 15 0.0005 36.9 5.1 63 525-591 72-134 (219)
234 2qmh_A HPR kinase/phosphorylas 51.1 5.9 0.0002 40.0 2.0 18 269-286 33-50 (205)
235 3vaa_A Shikimate kinase, SK; s 51.1 8.1 0.00028 38.4 3.0 20 269-288 24-43 (199)
236 3tau_A Guanylate kinase, GMP k 50.6 8.2 0.00028 38.7 3.0 19 269-287 7-25 (208)
237 3trf_A Shikimate kinase, SK; a 50.6 8.3 0.00028 37.5 3.0 20 270-289 5-24 (185)
238 3nbx_X ATPase RAVA; AAA+ ATPas 50.3 7.9 0.00027 44.8 3.2 27 261-287 32-58 (500)
239 1lvg_A Guanylate kinase, GMP k 49.9 7.7 0.00026 38.7 2.6 20 269-288 3-22 (198)
240 1qhx_A CPT, protein (chloramph 49.5 6.9 0.00024 37.8 2.2 19 270-288 3-21 (178)
241 3foz_A TRNA delta(2)-isopenten 48.8 7 0.00024 42.3 2.2 16 272-287 12-27 (316)
242 3io5_A Recombination and repai 48.8 12 0.0004 40.7 4.0 42 272-313 30-71 (333)
243 2j41_A Guanylate kinase; GMP, 48.7 7.8 0.00027 38.3 2.5 20 268-287 4-23 (207)
244 1u0j_A DNA replication protein 47.4 30 0.001 36.5 6.8 44 242-288 73-122 (267)
245 1ofh_A ATP-dependent HSL prote 47.2 23 0.00078 37.3 6.1 20 269-288 49-68 (310)
246 1y63_A LMAJ004144AAA protein; 46.8 8.5 0.00029 37.7 2.4 20 269-288 9-28 (184)
247 3uk6_A RUVB-like 2; hexameric 46.5 18 0.0006 39.5 5.2 20 270-289 70-89 (368)
248 3nwn_A Kinesin-like protein KI 46.2 13 0.00046 40.9 4.0 26 262-287 95-122 (359)
249 3tr0_A Guanylate kinase, GMP k 45.9 11 0.00037 37.2 3.0 19 269-287 6-24 (205)
250 2qor_A Guanylate kinase; phosp 45.8 9.4 0.00032 38.1 2.5 20 268-287 10-29 (204)
251 3iuy_A Probable ATP-dependent 45.7 36 0.0012 34.1 7.1 59 524-591 93-151 (228)
252 3ney_A 55 kDa erythrocyte memb 45.6 11 0.00039 37.8 3.1 20 268-287 17-36 (197)
253 3i5x_A ATP-dependent RNA helic 45.5 89 0.003 36.1 11.4 79 278-359 316-400 (563)
254 1tue_A Replication protein E1; 45.4 21 0.00071 36.2 5.0 44 242-287 28-75 (212)
255 3iij_A Coilin-interacting nucl 45.4 11 0.00037 36.5 2.9 21 268-288 9-29 (180)
256 3b9p_A CG5977-PA, isoform A; A 45.4 14 0.00047 39.1 3.9 19 270-288 54-72 (297)
257 1w4r_A Thymidine kinase; type 44.6 18 0.0006 36.3 4.2 39 269-309 19-57 (195)
258 1rj9_A FTSY, signal recognitio 44.6 17 0.0006 39.0 4.6 37 269-307 101-137 (304)
259 1qde_A EIF4A, translation init 44.5 31 0.0011 34.4 6.3 58 525-591 82-139 (224)
260 1kag_A SKI, shikimate kinase I 44.4 12 0.00042 35.7 3.1 18 270-287 4-21 (173)
261 1wp9_A ATP-dependent RNA helic 44.3 66 0.0023 35.6 9.7 73 279-358 340-426 (494)
262 1zp6_A Hypothetical protein AT 44.1 11 0.00037 36.8 2.7 21 267-287 6-26 (191)
263 3lw7_A Adenylate kinase relate 43.7 9.2 0.00032 36.3 2.0 17 272-288 3-19 (179)
264 1ojl_A Transcriptional regulat 43.7 12 0.00041 40.2 3.1 20 269-288 24-43 (304)
265 2ze6_A Isopentenyl transferase 43.7 11 0.00038 39.2 2.8 16 272-287 3-18 (253)
266 1bg2_A Kinesin; motor protein, 43.3 15 0.00052 39.9 3.9 26 262-287 68-95 (325)
267 4anj_A Unconventional myosin-V 43.2 28 0.00097 43.8 6.7 87 203-289 70-163 (1052)
268 1kht_A Adenylate kinase; phosp 43.0 10 0.00035 36.9 2.2 20 269-288 2-21 (192)
269 1z6g_A Guanylate kinase; struc 42.8 14 0.00047 37.5 3.3 21 267-287 20-40 (218)
270 3a00_A Guanylate kinase, GMP k 42.7 13 0.00045 36.4 3.0 18 270-287 1-18 (186)
271 2orv_A Thymidine kinase; TP4A 42.5 18 0.0006 37.4 4.0 40 269-310 18-57 (234)
272 1v8k_A Kinesin-like protein KI 42.5 16 0.00056 40.9 4.0 26 262-287 145-172 (410)
273 3cf0_A Transitional endoplasmi 42.2 9.9 0.00034 40.6 2.2 20 269-288 48-67 (301)
274 1t5c_A CENP-E protein, centrom 42.0 17 0.00058 39.9 4.0 26 262-287 68-95 (349)
275 3b6u_A Kinesin-like protein KI 42.0 17 0.00058 40.3 4.0 26 262-287 92-119 (372)
276 3gbj_A KIF13B protein; kinesin 41.9 17 0.00059 40.0 4.0 26 262-287 83-110 (354)
277 2qz4_A Paraplegin; AAA+, SPG7, 41.6 10 0.00036 39.0 2.2 19 270-288 39-57 (262)
278 2nr8_A Kinesin-like protein KI 41.6 17 0.0006 40.0 4.0 26 262-287 94-121 (358)
279 1hv8_A Putative ATP-dependent 41.5 58 0.002 34.7 8.4 57 297-359 235-296 (367)
280 3dc4_A Kinesin-like protein NO 41.4 14 0.00049 40.4 3.3 25 263-287 86-112 (344)
281 3sqw_A ATP-dependent RNA helic 41.3 1.1E+02 0.0038 35.5 11.4 59 298-359 286-349 (579)
282 4etp_A Kinesin-like protein KA 41.1 17 0.00059 40.8 3.9 26 262-287 131-158 (403)
283 1x88_A Kinesin-like protein KI 41.1 17 0.00058 40.1 3.9 26 262-287 79-106 (359)
284 2vvg_A Kinesin-2; motor protei 41.0 17 0.00059 39.9 3.9 26 262-287 80-107 (350)
285 2h58_A Kinesin-like protein KI 40.9 17 0.00058 39.6 3.8 26 262-287 71-98 (330)
286 1njg_A DNA polymerase III subu 40.8 15 0.00051 36.6 3.2 17 272-288 47-63 (250)
287 2y65_A Kinesin, kinesin heavy 40.7 17 0.00059 40.1 3.9 26 262-287 75-102 (365)
288 1ex7_A Guanylate kinase; subst 40.7 12 0.00041 37.2 2.3 16 271-286 2-17 (186)
289 1c9k_A COBU, adenosylcobinamid 40.5 18 0.00061 35.8 3.5 42 273-320 2-43 (180)
290 4a14_A Kinesin, kinesin-like p 40.4 17 0.00059 39.8 3.8 25 263-287 75-101 (344)
291 1goj_A Kinesin, kinesin heavy 40.3 17 0.00058 40.0 3.7 25 263-287 72-98 (355)
292 2zfi_A Kinesin-like protein KI 40.1 18 0.00061 40.0 3.9 26 262-287 80-107 (366)
293 3crm_A TRNA delta(2)-isopenten 40.0 13 0.00045 40.3 2.7 17 271-287 6-22 (323)
294 3nwj_A ATSK2; P loop, shikimat 39.8 17 0.00059 37.9 3.5 22 268-289 46-67 (250)
295 3d3q_A TRNA delta(2)-isopenten 39.8 12 0.0004 41.1 2.2 16 272-287 9-24 (340)
296 1knq_A Gluconate kinase; ALFA/ 39.6 11 0.00037 36.4 1.8 20 269-288 7-26 (175)
297 1lv7_A FTSH; alpha/beta domain 39.6 11 0.00039 38.8 2.1 19 270-288 45-63 (257)
298 3lre_A Kinesin-like protein KI 39.6 18 0.00061 39.9 3.7 25 263-287 97-123 (355)
299 4fcw_A Chaperone protein CLPB; 39.4 13 0.00045 39.4 2.6 18 271-288 48-65 (311)
300 1znw_A Guanylate kinase, GMP k 39.2 16 0.00055 36.4 3.1 22 266-287 16-37 (207)
301 3eph_A TRNA isopentenyltransfe 39.2 12 0.00042 41.9 2.4 16 272-287 4-19 (409)
302 2jgn_A DBX, DDX3, ATP-dependen 39.1 57 0.0019 31.8 7.1 70 280-358 29-103 (185)
303 4eun_A Thermoresistant glucoki 39.0 16 0.00055 36.2 3.0 20 269-288 28-47 (200)
304 2px0_A Flagellar biosynthesis 39.0 33 0.0011 36.6 5.6 49 269-318 104-154 (296)
305 2v26_A Myosin VI; calmodulin-b 38.9 42 0.0014 41.0 7.1 87 203-289 66-159 (784)
306 3u4q_B ATP-dependent helicase/ 38.8 22 0.00075 45.7 4.9 39 273-311 4-43 (1166)
307 3t0q_A AGR253WP; kinesin, alph 38.6 15 0.00053 40.3 3.0 26 262-287 76-103 (349)
308 3cob_A Kinesin heavy chain-lik 38.5 18 0.00061 40.1 3.5 25 263-287 71-97 (369)
309 4gp7_A Metallophosphoesterase; 38.5 12 0.0004 36.4 1.8 21 269-289 8-28 (171)
310 3b9q_A Chloroplast SRP recepto 38.4 18 0.00061 38.9 3.4 37 269-307 99-135 (302)
311 2v9p_A Replication protein E1; 38.3 19 0.00064 38.8 3.6 19 269-287 125-143 (305)
312 3kb2_A SPBC2 prophage-derived 38.2 13 0.00043 35.5 2.0 17 272-288 3-19 (173)
313 3u06_A Protein claret segregat 37.8 20 0.00068 40.3 3.8 26 262-287 129-156 (412)
314 3pfi_A Holliday junction ATP-d 37.7 18 0.00062 39.0 3.4 18 271-288 56-73 (338)
315 1g5t_A COB(I)alamin adenosyltr 37.6 31 0.0011 34.6 4.8 39 270-310 28-66 (196)
316 2heh_A KIF2C protein; kinesin, 37.6 19 0.00066 40.1 3.6 26 262-287 125-152 (387)
317 2wbe_C Bipolar kinesin KRP-130 37.6 18 0.00063 40.1 3.4 26 262-287 91-118 (373)
318 1ly1_A Polynucleotide kinase; 37.2 13 0.00046 35.5 2.1 16 272-287 4-19 (181)
319 3cm0_A Adenylate kinase; ATP-b 37.1 12 0.00041 36.3 1.7 21 269-289 3-23 (186)
320 1f9v_A Kinesin-like protein KA 36.6 16 0.00054 40.2 2.7 26 262-287 75-102 (347)
321 2c95_A Adenylate kinase 1; tra 36.1 17 0.00058 35.4 2.6 21 268-288 7-27 (196)
322 1um8_A ATP-dependent CLP prote 36.1 19 0.00064 39.7 3.3 19 270-288 72-90 (376)
323 2bwj_A Adenylate kinase 5; pho 36.1 16 0.00055 35.7 2.4 21 268-288 10-30 (199)
324 2r62_A Cell division protease 35.9 9.7 0.00033 39.6 0.8 19 270-288 44-62 (268)
325 1zd8_A GTP:AMP phosphotransfer 35.8 16 0.00055 37.0 2.5 20 269-288 6-25 (227)
326 1s96_A Guanylate kinase, GMP k 35.8 16 0.00054 37.3 2.4 21 267-287 13-33 (219)
327 1tev_A UMP-CMP kinase; ploop, 35.6 13 0.00046 36.1 1.8 19 270-288 3-21 (196)
328 2owm_A Nckin3-434, related to 35.5 22 0.00077 40.3 3.8 25 263-287 128-154 (443)
329 3tif_A Uncharacterized ABC tra 35.4 17 0.00058 37.4 2.5 18 269-286 30-47 (235)
330 3eiq_A Eukaryotic initiation f 35.3 1.3E+02 0.0043 32.8 10.0 77 524-607 107-189 (414)
331 3lnc_A Guanylate kinase, GMP k 35.3 15 0.00051 37.3 2.1 20 268-287 25-44 (231)
332 3dkp_A Probable ATP-dependent 35.0 46 0.0016 33.7 5.9 61 524-591 97-157 (245)
333 3uie_A Adenylyl-sulfate kinase 34.9 18 0.00061 35.8 2.6 21 268-288 23-43 (200)
334 3i32_A Heat resistant RNA depe 34.7 52 0.0018 35.2 6.4 55 299-359 27-86 (300)
335 1xti_A Probable ATP-dependent 34.7 80 0.0027 34.1 8.2 56 298-359 248-308 (391)
336 2rhm_A Putative kinase; P-loop 34.5 16 0.00054 35.6 2.1 19 270-288 5-23 (193)
337 2db3_A ATP-dependent RNA helic 34.4 86 0.0029 35.0 8.5 76 525-608 129-210 (434)
338 3asz_A Uridine kinase; cytidin 34.1 18 0.0006 36.0 2.4 19 269-287 5-23 (211)
339 3bfn_A Kinesin-like protein KI 34.1 21 0.0007 39.8 3.1 24 264-287 91-116 (388)
340 1sxj_D Activator 1 41 kDa subu 33.5 26 0.0009 37.6 3.9 18 271-288 59-76 (353)
341 2iyv_A Shikimate kinase, SK; t 33.5 19 0.00065 34.9 2.5 18 271-288 3-20 (184)
342 3fht_A ATP-dependent RNA helic 33.5 59 0.002 35.5 6.9 55 299-359 265-324 (412)
343 2c9o_A RUVB-like 1; hexameric 33.3 16 0.00056 41.5 2.2 19 270-288 63-81 (456)
344 1hqc_A RUVB; extended AAA-ATPa 33.3 14 0.00047 39.5 1.5 19 270-288 38-56 (324)
345 1g8p_A Magnesium-chelatase 38 33.3 20 0.0007 38.5 2.9 20 269-288 44-63 (350)
346 1g41_A Heat shock protein HSLU 33.3 20 0.0007 40.7 3.0 19 270-288 50-68 (444)
347 3tbk_A RIG-I helicase domain; 33.0 75 0.0025 36.2 7.9 76 525-608 52-134 (555)
348 2i4i_A ATP-dependent RNA helic 32.8 1.3E+02 0.0044 32.8 9.6 74 526-607 102-181 (417)
349 1m7g_A Adenylylsulfate kinase; 32.8 19 0.00065 36.0 2.4 31 257-288 13-43 (211)
350 2qt1_A Nicotinamide riboside k 32.8 19 0.00066 35.7 2.4 19 269-287 20-38 (207)
351 3c8u_A Fructokinase; YP_612366 32.7 17 0.00059 36.2 2.0 19 269-287 21-39 (208)
352 2z0m_A 337AA long hypothetical 32.6 1.2E+02 0.0041 31.8 9.0 75 524-607 55-135 (337)
353 1zuh_A Shikimate kinase; alpha 32.6 22 0.00075 33.9 2.7 19 271-289 8-26 (168)
354 2og2_A Putative signal recogni 32.5 24 0.00084 38.8 3.4 50 269-320 156-207 (359)
355 1cke_A CK, MSSA, protein (cyti 32.5 23 0.00077 35.6 2.9 20 270-289 5-24 (227)
356 2v54_A DTMP kinase, thymidylat 32.4 20 0.00067 35.3 2.4 20 269-288 3-22 (204)
357 4a2p_A RIG-I, retinoic acid in 32.4 95 0.0032 35.4 8.7 76 525-608 55-137 (556)
358 1g8x_A Myosin II heavy chain f 32.4 72 0.0025 40.1 8.0 86 203-289 99-191 (1010)
359 1f2t_A RAD50 ABC-ATPase; DNA d 32.4 18 0.00063 34.2 2.1 15 272-286 25-39 (149)
360 3e70_C DPA, signal recognition 32.3 25 0.00086 38.2 3.4 19 269-287 128-146 (328)
361 2yvu_A Probable adenylyl-sulfa 32.2 28 0.00094 33.8 3.4 21 269-289 12-32 (186)
362 1s2m_A Putative ATP-dependent 32.1 97 0.0033 33.6 8.4 56 298-359 256-316 (400)
363 2rep_A Kinesin-like protein KI 32.0 22 0.00075 39.5 2.9 25 263-287 107-133 (376)
364 3ice_A Transcription terminati 31.9 57 0.0019 36.4 6.1 30 260-289 161-193 (422)
365 2bdt_A BH3686; alpha-beta prot 31.8 16 0.00055 35.6 1.6 19 270-288 2-20 (189)
366 1ixz_A ATP-dependent metallopr 31.7 22 0.00076 36.5 2.8 17 271-287 50-66 (254)
367 3t61_A Gluconokinase; PSI-biol 31.6 18 0.00063 35.7 2.0 18 271-288 19-36 (202)
368 3kta_A Chromosome segregation 31.6 20 0.00068 34.6 2.2 16 272-287 28-43 (182)
369 4db1_A Myosin-7; S1DC, cardiac 31.5 49 0.0017 40.3 6.1 86 203-289 98-190 (783)
370 2pez_A Bifunctional 3'-phospho 31.5 20 0.00068 34.6 2.2 20 269-288 4-23 (179)
371 1via_A Shikimate kinase; struc 31.4 25 0.00086 33.7 3.0 19 271-289 5-23 (175)
372 3fb4_A Adenylate kinase; psych 31.4 20 0.00069 35.7 2.3 18 272-289 2-19 (216)
373 4a2q_A RIG-I, retinoic acid in 31.1 1.3E+02 0.0045 36.6 10.0 75 525-607 296-377 (797)
374 4g1u_C Hemin import ATP-bindin 30.4 27 0.00092 36.7 3.2 19 268-286 35-53 (266)
375 4b4t_M 26S protease regulatory 30.2 19 0.00065 40.8 2.0 18 270-287 215-232 (434)
376 3dl0_A Adenylate kinase; phosp 30.2 22 0.00075 35.5 2.3 18 272-289 2-19 (216)
377 1gvn_B Zeta; postsegregational 30.2 18 0.00061 38.5 1.7 17 271-287 34-50 (287)
378 1ry6_A Internal kinesin; kines 30.1 29 0.00099 38.3 3.4 22 266-287 78-102 (360)
379 1e6c_A Shikimate kinase; phosp 30.1 24 0.00083 33.5 2.6 18 271-288 3-20 (173)
380 2ff7_A Alpha-hemolysin translo 30.1 23 0.00079 36.7 2.5 18 269-286 34-51 (247)
381 3qf7_A RAD50; ABC-ATPase, ATPa 30.0 20 0.00067 39.6 2.1 17 272-288 25-41 (365)
382 1zak_A Adenylate kinase; ATP:A 30.0 30 0.001 34.7 3.4 20 270-289 5-24 (222)
383 3pey_A ATP-dependent RNA helic 30.0 96 0.0033 33.4 7.8 55 299-359 242-301 (395)
384 2fsf_A Preprotein translocase 30.0 78 0.0027 38.8 7.3 59 524-592 114-172 (853)
385 2v6i_A RNA helicase; membrane, 29.8 69 0.0023 35.9 6.7 54 300-359 171-225 (431)
386 4a74_A DNA repair and recombin 29.8 25 0.00086 35.1 2.7 21 269-289 24-44 (231)
387 3f9v_A Minichromosome maintena 29.7 21 0.00073 42.1 2.5 16 272-287 329-344 (595)
388 2wwf_A Thymidilate kinase, put 29.6 24 0.00082 34.9 2.5 20 269-288 9-28 (212)
389 2cdn_A Adenylate kinase; phosp 29.6 23 0.0008 34.9 2.4 19 270-288 20-38 (201)
390 2oca_A DAR protein, ATP-depend 29.6 83 0.0028 35.8 7.5 74 525-609 157-233 (510)
391 1lkx_A Myosin IE heavy chain; 29.5 54 0.0019 39.4 5.9 86 203-289 21-113 (697)
392 1mv5_A LMRA, multidrug resista 29.4 23 0.00079 36.5 2.4 18 269-286 27-44 (243)
393 3gfo_A Cobalt import ATP-bindi 29.4 24 0.00081 37.4 2.5 19 268-286 32-50 (275)
394 1aky_A Adenylate kinase; ATP:A 29.3 29 0.00099 34.8 3.1 20 269-288 3-22 (220)
395 3k1j_A LON protease, ATP-depen 29.3 38 0.0013 40.0 4.6 23 266-288 56-78 (604)
396 1fuu_A Yeast initiation factor 29.3 93 0.0032 33.6 7.5 76 524-608 88-169 (394)
397 3auy_A DNA double-strand break 29.2 22 0.00074 39.3 2.2 17 271-287 26-42 (371)
398 4e22_A Cytidylate kinase; P-lo 29.2 28 0.00096 36.0 3.0 20 269-288 26-45 (252)
399 1tf5_A Preprotein translocase 29.1 93 0.0032 38.1 7.9 58 524-591 123-180 (844)
400 1qf9_A UMP/CMP kinase, protein 29.0 26 0.00089 33.8 2.6 18 271-288 7-24 (194)
401 1nn5_A Similar to deoxythymidy 28.9 26 0.00087 34.7 2.6 21 269-289 8-28 (215)
402 1in4_A RUVB, holliday junction 28.8 27 0.00092 37.8 2.9 19 271-289 52-70 (334)
403 4b4t_L 26S protease subunit RP 28.6 44 0.0015 37.8 4.7 19 270-288 215-233 (437)
404 3l9o_A ATP-dependent RNA helic 28.5 77 0.0026 40.4 7.4 70 520-608 222-297 (1108)
405 2yhs_A FTSY, cell division pro 28.5 31 0.0011 39.7 3.4 48 270-319 293-342 (503)
406 2plr_A DTMP kinase, probable t 28.4 20 0.00069 35.3 1.7 20 269-288 3-22 (213)
407 1nks_A Adenylate kinase; therm 28.2 24 0.00083 34.0 2.2 17 272-288 3-19 (194)
408 2vli_A Antibiotic resistance p 28.0 21 0.00071 34.4 1.7 21 269-289 4-24 (183)
409 3pxg_A Negative regulator of g 28.0 30 0.001 39.5 3.2 28 22-49 9-37 (468)
410 1rz3_A Hypothetical protein rb 27.9 37 0.0013 33.5 3.6 19 270-288 22-40 (201)
411 1w9i_A Myosin II heavy chain; 27.9 63 0.0022 39.2 6.1 86 203-289 99-191 (770)
412 2r2a_A Uncharacterized protein 27.8 33 0.0011 34.3 3.1 18 272-289 7-24 (199)
413 2j0s_A ATP-dependent RNA helic 27.7 86 0.0029 34.3 6.9 54 300-359 276-334 (410)
414 1iy2_A ATP-dependent metallopr 27.6 29 0.00099 36.3 2.8 17 271-287 74-90 (278)
415 2if2_A Dephospho-COA kinase; a 27.3 32 0.0011 33.8 3.0 16 272-287 3-18 (204)
416 3nh6_A ATP-binding cassette SU 27.2 27 0.00094 37.5 2.5 19 268-286 78-96 (306)
417 1xjc_A MOBB protein homolog; s 27.2 42 0.0014 32.7 3.6 15 272-286 6-20 (169)
418 1ye8_A Protein THEP1, hypothet 27.0 32 0.0011 33.6 2.8 16 272-287 2-17 (178)
419 2ixe_A Antigen peptide transpo 26.9 28 0.00097 36.6 2.5 19 268-286 43-61 (271)
420 1g6h_A High-affinity branched- 26.9 28 0.00097 36.2 2.5 19 268-286 31-49 (257)
421 2f1r_A Molybdopterin-guanine d 26.9 27 0.00091 34.1 2.2 17 272-288 4-20 (171)
422 2i3b_A HCR-ntpase, human cance 26.7 34 0.0012 33.8 3.0 19 270-288 1-19 (189)
423 1uf9_A TT1252 protein; P-loop, 26.7 33 0.0011 33.5 2.9 17 272-288 10-26 (203)
424 2yjt_D ATP-dependent RNA helic 32.6 14 0.00047 35.7 0.0 54 299-358 29-87 (170)
425 1ak2_A Adenylate kinase isoenz 26.5 34 0.0012 34.7 3.1 21 269-289 15-35 (233)
426 3be4_A Adenylate kinase; malar 26.4 36 0.0012 34.1 3.1 19 270-288 5-23 (217)
427 2r8r_A Sensor protein; KDPD, P 26.0 55 0.0019 33.5 4.4 28 269-296 4-32 (228)
428 3pvs_A Replication-associated 26.0 31 0.0011 39.2 2.8 18 271-288 51-68 (447)
429 1ukz_A Uridylate kinase; trans 25.9 27 0.00092 34.4 2.1 17 271-287 16-32 (203)
430 1b0u_A Histidine permease; ABC 25.7 31 0.001 36.1 2.5 18 269-286 31-48 (262)
431 2olj_A Amino acid ABC transpor 25.6 31 0.0011 36.2 2.5 19 268-286 48-66 (263)
432 1kk8_A Myosin heavy chain, str 25.6 63 0.0022 39.7 5.6 86 203-289 96-188 (837)
433 2pt5_A Shikimate kinase, SK; a 25.5 31 0.0011 32.6 2.3 17 272-288 2-18 (168)
434 1jjv_A Dephospho-COA kinase; P 25.4 31 0.001 34.1 2.4 17 272-288 4-20 (206)
435 1e4v_A Adenylate kinase; trans 25.2 36 0.0012 33.9 2.9 17 272-288 2-18 (214)
436 2dfs_A Myosin-5A; myosin-V, in 25.2 84 0.0029 39.8 6.8 86 203-289 82-175 (1080)
437 1j8m_F SRP54, signal recogniti 25.1 68 0.0023 34.1 5.2 49 270-320 98-148 (297)
438 3tlx_A Adenylate kinase 2; str 25.0 34 0.0012 35.1 2.8 21 269-289 28-48 (243)
439 2x8a_A Nuclear valosin-contain 25.0 28 0.00096 36.6 2.1 17 271-287 45-61 (274)
440 1sq5_A Pantothenate kinase; P- 24.8 57 0.0019 34.8 4.5 18 270-287 80-97 (308)
441 1yks_A Genome polyprotein [con 24.7 76 0.0026 35.7 5.8 54 300-359 177-231 (440)
442 1nkt_A Preprotein translocase 24.6 1.3E+02 0.0045 37.1 7.9 58 524-591 151-208 (922)
443 2ycu_A Non muscle myosin 2C, a 24.6 74 0.0025 40.0 6.1 86 203-289 73-165 (995)
444 3b6e_A Interferon-induced heli 24.5 84 0.0029 30.6 5.5 58 525-591 82-140 (216)
445 2pcj_A ABC transporter, lipopr 24.3 31 0.001 35.1 2.2 18 269-286 29-46 (224)
446 2cbz_A Multidrug resistance-as 24.3 36 0.0012 35.0 2.7 18 269-286 30-47 (237)
447 2p5t_B PEZT; postsegregational 24.1 23 0.00078 36.7 1.2 19 270-288 32-50 (253)
448 4b4t_H 26S protease regulatory 24.1 24 0.00083 40.2 1.4 18 270-287 243-260 (467)
449 2ipc_A Preprotein translocase 24.0 1E+02 0.0035 38.1 6.8 59 524-592 119-177 (997)
450 1w7j_A Myosin VA; motor protei 23.8 68 0.0023 39.2 5.3 86 203-289 82-175 (795)
451 1tf7_A KAIC; homohexamer, hexa 23.7 55 0.0019 37.8 4.5 38 269-307 38-75 (525)
452 2jaq_A Deoxyguanosine kinase; 23.7 35 0.0012 33.3 2.4 17 272-288 2-18 (205)
453 2xau_A PRE-mRNA-splicing facto 23.7 2.3E+02 0.0077 34.4 10.1 63 297-359 300-377 (773)
454 2chq_A Replication factor C sm 23.6 49 0.0017 34.7 3.8 17 272-288 40-56 (319)
455 3m6a_A ATP-dependent protease 23.6 36 0.0012 39.6 2.9 20 269-288 107-126 (543)
456 2pbr_A DTMP kinase, thymidylat 23.6 35 0.0012 32.9 2.4 17 272-288 2-18 (195)
457 2z0h_A DTMP kinase, thymidylat 23.6 32 0.0011 33.4 2.1 17 273-289 3-19 (197)
458 4b4t_I 26S protease regulatory 23.6 30 0.001 39.0 2.1 18 270-287 216-233 (437)
459 4gl2_A Interferon-induced heli 23.5 39 0.0013 40.3 3.2 74 526-608 57-143 (699)
460 1sxj_C Activator 1 40 kDa subu 23.4 61 0.0021 34.9 4.5 18 272-289 48-65 (340)
461 4h1g_A Maltose binding protein 23.3 44 0.0015 40.4 3.6 26 262-287 453-480 (715)
462 2grj_A Dephospho-COA kinase; T 23.3 33 0.0011 34.1 2.1 39 272-318 14-52 (192)
463 2bbw_A Adenylate kinase 4, AK4 23.3 41 0.0014 34.3 3.0 20 269-288 26-45 (246)
464 3qks_A DNA double-strand break 23.1 33 0.0011 34.2 2.1 16 272-287 25-40 (203)
465 2ffh_A Protein (FFH); SRP54, s 23.1 97 0.0033 34.8 6.1 50 269-320 97-148 (425)
466 1sgw_A Putative ABC transporte 23.0 42 0.0014 33.9 2.9 19 268-286 33-51 (214)
467 1nij_A Hypothetical protein YJ 23.0 55 0.0019 35.1 4.0 34 272-309 6-39 (318)
468 3fvq_A Fe(3+) IONS import ATP- 22.8 45 0.0015 36.7 3.2 18 269-286 29-46 (359)
469 3tqc_A Pantothenate kinase; bi 22.7 1.1E+02 0.0038 32.9 6.3 16 272-287 94-109 (321)
470 1zu4_A FTSY; GTPase, signal re 22.5 94 0.0032 33.4 5.7 36 269-306 104-139 (320)
471 2ce7_A Cell division protein F 22.5 32 0.0011 39.4 2.1 18 271-288 50-67 (476)
472 3b5x_A Lipid A export ATP-bind 22.3 53 0.0018 38.5 4.0 19 268-286 367-385 (582)
473 2ghi_A Transport protein; mult 22.3 41 0.0014 35.1 2.7 19 268-286 44-62 (260)
474 1jr3_A DNA polymerase III subu 22.2 55 0.0019 35.3 3.9 17 272-288 40-56 (373)
475 4akg_A Glutathione S-transfera 22.2 33 0.0011 47.7 2.4 21 267-287 1264-1284(2695)
476 3a4m_A L-seryl-tRNA(SEC) kinas 22.2 34 0.0012 35.5 2.1 19 270-288 4-22 (260)
477 2pze_A Cystic fibrosis transme 22.2 42 0.0014 34.2 2.7 19 268-286 32-50 (229)
478 3pxi_A Negative regulator of g 22.1 43 0.0015 40.7 3.2 21 269-289 200-220 (758)
479 1vht_A Dephospho-COA kinase; s 22.0 39 0.0013 33.7 2.4 18 271-288 5-22 (218)
480 3pxi_A Negative regulator of g 21.5 50 0.0017 40.1 3.6 17 272-288 523-539 (758)
481 3fmo_B ATP-dependent RNA helic 21.4 82 0.0028 33.3 5.0 73 525-607 162-241 (300)
482 4fn4_A Short chain dehydrogena 21.4 3.3E+02 0.011 28.0 9.5 65 517-591 23-92 (254)
483 3d31_A Sulfate/molybdate ABC t 21.3 47 0.0016 36.4 3.0 18 269-286 25-42 (348)
484 1z47_A CYSA, putative ABC-tran 21.3 48 0.0016 36.4 3.1 19 268-286 39-57 (355)
485 1r6b_X CLPA protein; AAA+, N-t 21.2 52 0.0018 39.9 3.7 17 272-288 490-506 (758)
486 3sr0_A Adenylate kinase; phosp 21.2 45 0.0016 33.4 2.7 18 272-289 2-19 (206)
487 2yyz_A Sugar ABC transporter, 21.2 48 0.0016 36.4 3.1 26 269-296 28-53 (359)
488 1ls1_A Signal recognition part 21.0 1.1E+02 0.0038 32.3 5.9 48 269-318 97-146 (295)
489 1odf_A YGR205W, hypothetical 3 20.9 41 0.0014 35.7 2.4 16 272-287 33-48 (290)
490 1htw_A HI0065; nucleotide-bind 20.8 69 0.0024 30.6 3.8 19 268-286 31-49 (158)
491 3rlf_A Maltose/maltodextrin im 20.8 49 0.0017 36.7 3.1 26 269-296 28-53 (381)
492 3bs4_A Uncharacterized protein 20.7 68 0.0023 33.5 4.0 50 270-322 21-70 (260)
493 3qkt_A DNA double-strand break 20.6 38 0.0013 36.8 2.1 16 272-287 25-40 (339)
494 2ovk_C Myosin catalytic light 20.6 95 0.0032 28.5 4.7 136 14-164 5-150 (159)
495 2jeo_A Uridine-cytidine kinase 20.6 42 0.0014 34.3 2.3 20 269-288 24-43 (245)
496 1q3t_A Cytidylate kinase; nucl 20.5 53 0.0018 33.3 3.1 21 269-289 15-35 (236)
497 1pzn_A RAD51, DNA repair and r 20.5 55 0.0019 35.7 3.4 40 269-308 130-173 (349)
498 1ji0_A ABC transporter; ATP bi 20.3 48 0.0016 34.0 2.7 18 269-286 31-48 (240)
499 2onk_A Molybdate/tungstate ABC 20.3 49 0.0017 34.0 2.8 16 271-286 25-40 (240)
500 2xb4_A Adenylate kinase; ATP-b 20.3 49 0.0017 33.3 2.7 18 272-289 2-19 (223)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=6.6e-49 Score=457.55 Aligned_cols=350 Identities=19% Similarity=0.237 Sum_probs=269.6
Q ss_pred EEeeecCCcccccccCCccccHHHHHHHHhCCCCCCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcCC-
Q 002135 221 VHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDL- 299 (961)
Q Consensus 221 v~~~~~p~~~~~f~~l~~~L~~~l~~~L~~~g~~~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~~- 299 (961)
+...+.|.+..+|.++ +|++.+.++|++.||.+|+|+|.+||+.+++|+|++++||||||||++|++|++..+...+
T Consensus 46 ~~~~~~p~~~~~f~~~--~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~ 123 (434)
T 2db3_A 46 VTGSDVPQPIQHFTSA--DLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPH 123 (434)
T ss_dssp EESSSCCCCCCCGGGS--CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCC
T ss_pred ecCCCCCCCcCChhhc--CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhccc
Confidence 4556778888889998 6999999999999999999999999999999999999999999999999999999886542
Q ss_pred -----CCeEEEEcccHHHHHHHHHHHHHhHhhCCCCccEEEEcCCCc-HHHHHHHhcCCcEEEeChhHHHHhhcCCCchh
Q 002135 300 -----SSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTT-QKDRMWLRDNARLLITNPDMLHMSILPYHGQF 373 (961)
Q Consensus 300 -----~~~aLvl~PtraLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~-~~~r~~l~~~~~IlItTPe~L~~~lL~~~~~~ 373 (961)
++++||++||++|+.|+++++++++...+ +++..+.|+.. ..+...+..+++|+|+||++|.+.+...
T Consensus 124 ~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~--~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~---- 197 (434)
T 2db3_A 124 ELELGRPQVVIVSPTRELAIQIFNEARKFAFESY--LKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRT---- 197 (434)
T ss_dssp CCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSS--CCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTT----
T ss_pred ccccCCccEEEEecCHHHHHHHHHHHHHHhccCC--cEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhC----
Confidence 56899999999999999999999876544 55555566554 4455667778999999999998765211
Q ss_pred HHHhhhhhhhhhhcchhhhhhhhcceeEEEEecchhhhc-ccchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCChHH-
Q 002135 374 SRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKG-AFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPRE- 451 (961)
Q Consensus 374 ~~~L~~l~~~~~~~~~~~~~~~~~~i~~VVIDEaH~~~~-~fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~~e- 451 (961)
...+.++ ++||+||||++.+ +|+.++..++..+. .....|++++|||+++..+
T Consensus 198 ~~~l~~~-------------------~~lVlDEah~~~~~gf~~~~~~i~~~~~------~~~~~q~l~~SAT~~~~~~~ 252 (434)
T 2db3_A 198 FITFEDT-------------------RFVVLDEADRMLDMGFSEDMRRIMTHVT------MRPEHQTLMFSATFPEEIQR 252 (434)
T ss_dssp SCCCTTC-------------------CEEEEETHHHHTSTTTHHHHHHHHHCTT------SCSSCEEEEEESCCCHHHHH
T ss_pred CcccccC-------------------CeEEEccHhhhhccCcHHHHHHHHHhcC------CCCCceEEEEeccCCHHHHH
Confidence 1123444 9999999999987 46666655544321 1356799999999975432
Q ss_pred HHHHHcccCCeEEEecC--CCc-cceeEEEEeCCCccccccccccccccchhhhcccCCCCcHHHHHHHHHHHHHCCCcE
Q 002135 452 HCMELANLSTLELIQND--GSP-CAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRC 528 (961)
Q Consensus 452 ~~~~L~~~~~~~~i~~~--g~p-~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~k~ 528 (961)
.+..+.. +...+... +.. ......+.. .........++..+...+.++
T Consensus 253 ~~~~~l~--~~~~i~~~~~~~~~~~i~~~~~~---------------------------~~~~~k~~~l~~~l~~~~~~~ 303 (434)
T 2db3_A 253 MAGEFLK--NYVFVAIGIVGGACSDVKQTIYE---------------------------VNKYAKRSKLIEILSEQADGT 303 (434)
T ss_dssp HHHTTCS--SCEEEEESSTTCCCTTEEEEEEE---------------------------CCGGGHHHHHHHHHHHCCTTE
T ss_pred HHHHhcc--CCEEEEeccccccccccceEEEE---------------------------eCcHHHHHHHHHHHHhCCCCE
Confidence 2222222 22222211 111 111111111 011122233344444456679
Q ss_pred EEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEeccccccccccCCccEEEEe
Q 002135 529 IAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHL 608 (961)
Q Consensus 529 IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~aLe~GIDIp~vd~VI~~ 608 (961)
||||++++.|+.+++.|++ .+..+..+||++++.+|++++++|++|+.+|||||+++++|||+|++++||+|
T Consensus 304 lVF~~t~~~a~~l~~~L~~--------~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~ 375 (434)
T 2db3_A 304 IVFVETKRGADFLASFLSE--------KEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINY 375 (434)
T ss_dssp EEECSSHHHHHHHHHHHHH--------TTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEES
T ss_pred EEEEeCcHHHHHHHHHHHh--------CCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEE
Confidence 9999999999999998876 34578999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHhhHHHHhccCCCCCCCceEEEEeeCC
Q 002135 609 GFPGSIASLWQQAGRSGRRERPSLAVYVAFEG 640 (961)
Q Consensus 609 ~~P~s~~sy~QR~GRAGR~g~~g~~i~l~~~~ 640 (961)
|+|.+..+|+||+||+||.|+.|.+++++...
T Consensus 376 d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~ 407 (434)
T 2db3_A 376 DMPSKIDDYVHRIGRTGRVGNNGRATSFFDPE 407 (434)
T ss_dssp SCCSSHHHHHHHHTTSSCTTCCEEEEEEECTT
T ss_pred CCCCCHHHHHHHhcccccCCCCCEEEEEEecc
Confidence 99999999999999999999999999887643
No 2
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=4.4e-46 Score=447.88 Aligned_cols=389 Identities=15% Similarity=0.167 Sum_probs=282.4
Q ss_pred cccccCCc--cccHHHHHHHHhCCCCCCcHHHHHHHHHHh--CCCcEEEEecCCchhHHHHHHHHHHHHhcCC-----CC
Q 002135 231 AVLVEIPD--ALLDNTKSALKSTGISKLYSHQAESIMASL--AGKNVVVATMTSSGKSLCYNLPVLEALSHDL-----SS 301 (961)
Q Consensus 231 ~~f~~l~~--~L~~~l~~~L~~~g~~~l~~~Q~~ai~~il--~G~~vIv~apTGSGKTla~~Lpil~~l~~~~-----~~ 301 (961)
.+|.++.+ .|++.+.++|+++||..|+|+|.++|+.++ .|+|++++||||||||++|++|+++.+.... +.
T Consensus 68 ~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~ 147 (563)
T 3i5x_A 68 VTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMV 147 (563)
T ss_dssp CCHHHHHHTTSSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSC
T ss_pred cCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCe
Confidence 34554421 389999999999999999999999999999 6789999999999999999999999987643 35
Q ss_pred eEEEEcccHHHHHHHHHHHHHhHhhC-C-CCccEEEEcCC-CcHHHHHHH-hcCCcEEEeChhHHHHhhcCCCchhHHHh
Q 002135 302 SALYMFPTKALAQDQLRALLAMTKAF-D-ASIDIGVYDGD-TTQKDRMWL-RDNARLLITNPDMLHMSILPYHGQFSRIL 377 (961)
Q Consensus 302 ~aLvl~PtraLa~qq~~~l~~l~~~~-~-~~i~v~~~~Gd-~~~~~r~~l-~~~~~IlItTPe~L~~~lL~~~~~~~~~L 377 (961)
++|||+||++|+.|+.+.++++.... + ....+....|+ ....+...+ ..+++|+|+||++|.+.+. ......+
T Consensus 148 ~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~---~~~~~~~ 224 (563)
T 3i5x_A 148 KAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLE---KYSNKFF 224 (563)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHH---HHHHHHC
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHH---hcccccc
Confidence 89999999999999999999976532 1 12334444444 444444444 4479999999999977652 1112344
Q ss_pred hhhhhhhhhcchhhhhhhhcceeEEEEecchhhhc-ccchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCChH-HHHHH
Q 002135 378 SNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKG-AFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPR-EHCME 455 (961)
Q Consensus 378 ~~l~~~~~~~~~~~~~~~~~~i~~VVIDEaH~~~~-~fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~~-e~~~~ 455 (961)
+++ ++|||||||++.+ +|+..+..++..+...... .....|++++|||+++.. +.+.+
T Consensus 225 ~~~-------------------~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~-~~~~~~~l~~SAT~~~~v~~~~~~ 284 (563)
T 3i5x_A 225 RFV-------------------DYKVLDEADRLLEIGFRDDLETISGILNEKNSK-SADNIKTLLFSATLDDKVQKLANN 284 (563)
T ss_dssp TTC-------------------CEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSS-CTTCCEEEEEESSCCTHHHHHTTT
T ss_pred ccc-------------------eEEEEeCHHHHhccchHHHHHHHHHhhhhcccc-CccCceEEEEEccCCHHHHHHHHH
Confidence 555 9999999999987 4899999988888776533 234679999999998753 33333
Q ss_pred HcccCCeEEEecCCCccc-----eeEEEEeCCCccccccccccccccchhhhcccCCCCcHHHHHH-HHHHHH--HCCCc
Q 002135 456 LANLSTLELIQNDGSPCA-----QKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSY-LFAEMV--QHGLR 527 (961)
Q Consensus 456 L~~~~~~~~i~~~g~p~~-----~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-ll~~l~--~~g~k 527 (961)
+.+......+........ ....... ............. +...+. ..+.+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~ 341 (563)
T 3i5x_A 285 IMNKKECLFLDTVDKNEPEAHERIDQSVVI-----------------------SEKFANSIFAAVEHIKKQIKERDSNYK 341 (563)
T ss_dssp TCCSSEEEEEESSCSSSCSSCTTEEEEEEE-----------------------ESSTTHHHHHHHHHHHHHHHHTTTCCE
T ss_pred hcCCCceEEEeccCCCCccccccCceEEEE-----------------------CchhHhhHHHHHHHHHHHHhhcCCCCc
Confidence 333221222211111000 0000000 0011111122222 222222 24679
Q ss_pred EEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEeccccccccccCCccEEEE
Q 002135 528 CIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLH 607 (961)
Q Consensus 528 ~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~aLe~GIDIp~vd~VI~ 607 (961)
+||||+|++.|+.++..|++.+.. +..+..+||++++.+|..+++.|++|+.+|||||+++++|||+|++++||+
T Consensus 342 ~iVF~~s~~~~~~l~~~L~~~~~~-----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~ 416 (563)
T 3i5x_A 342 AIIFAPTVKFTSFLCSILKNEFKK-----DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ 416 (563)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHTT-----TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE
T ss_pred EEEEcCcHHHHHHHHHHHHHhccC-----CceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEE
Confidence 999999999999999998875431 346889999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHhhHHHHhccCCCCCCCceEEEEeeCCcchhHHHhchHHhhcCCCcccccCCCCHHHHH
Q 002135 608 LGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLE 672 (961)
Q Consensus 608 ~~~P~s~~sy~QR~GRAGR~g~~g~~i~l~~~~~~d~~~~~~~e~l~~~~ie~~~~~~~n~~vl~ 672 (961)
+++|.+..+|+||+|||||.|++|.+++++.. .|..+.+..++....+++.......+..++.
T Consensus 417 ~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~--~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 479 (563)
T 3i5x_A 417 IGVPSELANYIHRIGRTARSGKEGSSVLFICK--DELPFVRELEDAKNIVIAKQEKYEPSEEIKS 479 (563)
T ss_dssp ESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEG--GGHHHHHHHHHHHCCCCCEEEEECCCHHHHH
T ss_pred ECCCCchhhhhhhcCccccCCCCceEEEEEch--hHHHHHHHHHHHhCCCcccccccCccHHHHH
Confidence 99999999999999999999999999988764 4566677777777777765554444444443
No 3
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=8.2e-47 Score=465.71 Aligned_cols=424 Identities=20% Similarity=0.255 Sum_probs=320.7
Q ss_pred ccccCCccccHHHHHHHHhCCCCCCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHH
Q 002135 232 VLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKA 311 (961)
Q Consensus 232 ~f~~l~~~L~~~l~~~L~~~g~~~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~Ptra 311 (961)
+|.+++.+|++.+.+.++++||..|+++|.++++.+++|+++++++|||||||++|.+|+++.+.+ +.+++|++|+++
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~--~~~~l~i~P~r~ 79 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK--GGKSLYVVPLRA 79 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT--TCCEEEEESSHH
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh--CCcEEEEeCcHH
Confidence 466675459999999999999999999999999999999999999999999999999999988764 578999999999
Q ss_pred HHHHHHHHHHHhHhhCCCCccEEEEcCCCcHHHHHHHhcCCcEEEeChhHHHHhhcCCCchhHHHhhhhhhhhhhcchhh
Q 002135 312 LAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTE 391 (961)
Q Consensus 312 La~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~~~r~~l~~~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~~~~~~~~ 391 (961)
|+.|++++++.+. .. ++.++...|+....++ ...+++|+|+||++|...+.. . ...++++
T Consensus 80 La~q~~~~~~~~~-~~--g~~v~~~~G~~~~~~~--~~~~~~Iiv~Tpe~l~~~l~~-~---~~~l~~~----------- 139 (702)
T 2p6r_A 80 LAGEKYESFKKWE-KI--GLRIGISTGDYESRDE--HLGDCDIIVTTSEKADSLIRN-R---ASWIKAV----------- 139 (702)
T ss_dssp HHHHHHHHHTTTT-TT--TCCEEEECSSCBCCSS--CSTTCSEEEEEHHHHHHHHHT-T---CSGGGGC-----------
T ss_pred HHHHHHHHHHHHH-hc--CCEEEEEeCCCCcchh--hccCCCEEEECHHHHHHHHHc-C---hhHHhhc-----------
Confidence 9999999996443 22 4788999998765442 224789999999999765422 1 1224555
Q ss_pred hhhhhcceeEEEEecchhhhc-ccchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCChHHHHHHHcccCCeEEEecCCC
Q 002135 392 VYLIFLFIRFVVIDEAHAYKG-AFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGS 470 (961)
Q Consensus 392 ~~~~~~~i~~VVIDEaH~~~~-~fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~~e~~~~L~~~~~~~~i~~~g~ 470 (961)
++|||||+|++.+ .+|..+..++.++++. +.++|+|++|||++|+.+...++. ...+..+++
T Consensus 140 --------~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~-----~~~~~ii~lSATl~n~~~~~~~l~----~~~~~~~~r 202 (702)
T 2p6r_A 140 --------SCLVVDEIHLLDSEKRGATLEILVTKMRRM-----NKALRVIGLSATAPNVTEIAEWLD----ADYYVSDWR 202 (702)
T ss_dssp --------CEEEETTGGGGGCTTTHHHHHHHHHHHHHH-----CTTCEEEEEECCCTTHHHHHHHTT----CEEEECCCC
T ss_pred --------CEEEEeeeeecCCCCcccHHHHHHHHHHhc-----CcCceEEEECCCcCCHHHHHHHhC----CCcccCCCC
Confidence 9999999999987 5999999999998864 457899999999999877777663 456778888
Q ss_pred ccceeEEEEeCCCccccccccccccccchhhhcccCCCCcHHHHHHHHHHHHHCCCcEEEEecChHHHHHHHHHHHHHHH
Q 002135 471 PCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILE 550 (961)
Q Consensus 471 p~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~k~IVF~~sr~~ae~l~~~L~~~l~ 550 (961)
|.+....+.+.+...... .... ...... ...++.+....+.++||||++++.|+.++..|.+.+.
T Consensus 203 ~~~l~~~~~~~~~~~~~~---~~~~--------~~~~~~----~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~ 267 (702)
T 2p6r_A 203 PVPLVEGVLCEGTLELFD---GAFS--------TSRRVK----FEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITA 267 (702)
T ss_dssp SSCEEEEEECSSEEEEEE---TTEE--------EEEECC----HHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CccceEEEeeCCeeeccC---cchh--------hhhhhh----HHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHH
Confidence 877766555443221000 0000 000001 3344455556788999999999999999999887543
Q ss_pred hhC----------------------CcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEeccccccccccCCccEEEE-
Q 002135 551 ETA----------------------PHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLH- 607 (961)
Q Consensus 551 ~~~----------------------~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~aLe~GIDIp~vd~VI~- 607 (961)
... ..+...+..|||++++++|+.+++.|++|+++|||||+++++|||+|++++||+
T Consensus 268 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~ 347 (702)
T 2p6r_A 268 KYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRS 347 (702)
T ss_dssp TTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECC
T ss_pred hhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcC
Confidence 210 001235889999999999999999999999999999999999999999999998
Q ss_pred ---eC---CCCCHhhHHHHhccCCCCC--CCceEEEEeeCCcchhHHHhchHHhhcCCCcccccCCCCHHHHHHHHHHHH
Q 002135 608 ---LG---FPGSIASLWQQAGRSGRRE--RPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLVCAA 679 (961)
Q Consensus 608 ---~~---~P~s~~sy~QR~GRAGR~g--~~g~~i~l~~~~~~d~~~~~~~e~l~~~~ie~~~~~~~n~~vl~~~l~~aa 679 (961)
|| .|.|.++|+||+|||||.| .+|.|++++.....+ ...++++....|....+..+...+..|+.+..
T Consensus 348 ~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~----~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~ 423 (702)
T 2p6r_A 348 LYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDRE----IAVKRYIFGEPERITSKLGVETHLRFHSLSII 423 (702)
T ss_dssp SEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHH----HHHHTTTSSCCCCCCCCCCSHHHHHHHHHHHH
T ss_pred ceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHH----HHHHHHhcCCCCCceeecCcchhHHHHHHHHH
Confidence 66 7899999999999999997 478888777554322 22334555666777778888889999998887
Q ss_pred hcCCCChhhh-hhh----c---------cCCHHHHHHHHHHCCccccC
Q 002135 680 LEHPLSLIYD-EKY----F---------GSGLSSGITTLKNRGYLSSD 713 (961)
Q Consensus 680 ~e~p~~~~~~-~~~----f---------~~~~~~~l~~L~~~g~l~~~ 713 (961)
.........+ ..+ | .+.+.++++.|.+.|++..+
T Consensus 424 ~~g~~~~~~~~~~~l~~t~~~~~~~~~~~~~~~~al~~L~~~g~i~~~ 471 (702)
T 2p6r_A 424 CDGYAKTLEELEDFFADTFFFKQNEISLSYELERVVRQLENWGMVVEA 471 (702)
T ss_dssp HHTSCSSHHHHHHHHHTSTTHHHHCCCCHHHHHHHHHHHHHTTSEEES
T ss_pred HcCCCCCHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHCcCeeEC
Confidence 7664421111 111 1 12478889999999999876
No 4
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=5.8e-46 Score=448.31 Aligned_cols=390 Identities=15% Similarity=0.171 Sum_probs=282.3
Q ss_pred CCcccccccCCc--cccHHHHHHHHhCCCCCCcHHHHHHHHHHh--CCCcEEEEecCCchhHHHHHHHHHHHHhcCC---
Q 002135 227 SARKAVLVEIPD--ALLDNTKSALKSTGISKLYSHQAESIMASL--AGKNVVVATMTSSGKSLCYNLPVLEALSHDL--- 299 (961)
Q Consensus 227 p~~~~~f~~l~~--~L~~~l~~~L~~~g~~~l~~~Q~~ai~~il--~G~~vIv~apTGSGKTla~~Lpil~~l~~~~--- 299 (961)
+..+.+|.++.. .|++.+.++|+.+||..|+|+|.++|+.++ .|++++++||||||||++|++|+++.+....
T Consensus 13 ~~~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~ 92 (579)
T 3sqw_A 13 NSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDS 92 (579)
T ss_dssp SCCCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSS
T ss_pred CCCCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccc
Confidence 444555666532 389999999999999999999999999999 7889999999999999999999999887643
Q ss_pred --CCeEEEEcccHHHHHHHHHHHHHhHhhCC--CCccEE-EEcCCCcHHHHHHH-hcCCcEEEeChhHHHHhhcCCCchh
Q 002135 300 --SSSALYMFPTKALAQDQLRALLAMTKAFD--ASIDIG-VYDGDTTQKDRMWL-RDNARLLITNPDMLHMSILPYHGQF 373 (961)
Q Consensus 300 --~~~aLvl~PtraLa~qq~~~l~~l~~~~~--~~i~v~-~~~Gd~~~~~r~~l-~~~~~IlItTPe~L~~~lL~~~~~~ 373 (961)
+.++|||+||++|+.|+.+.+.++..... ..+.+. .++|.....+...+ ..+++|+|+||++|.+.+. ...
T Consensus 93 ~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~---~~~ 169 (579)
T 3sqw_A 93 QYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLE---KYS 169 (579)
T ss_dssp TTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHH---HHH
T ss_pred cCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHH---hcc
Confidence 45899999999999999999999864311 123344 44444444444444 3479999999999987651 111
Q ss_pred HHHhhhhhhhhhhcchhhhhhhhcceeEEEEecchhhhc-ccchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCChH-H
Q 002135 374 SRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKG-AFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPR-E 451 (961)
Q Consensus 374 ~~~L~~l~~~~~~~~~~~~~~~~~~i~~VVIDEaH~~~~-~fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~~-e 451 (961)
...+.++ ++|||||||++.+ +|+.++..++..+...... .....|++++|||+++.. +
T Consensus 170 ~~~~~~~-------------------~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~-~~~~~~~l~~SAT~~~~v~~ 229 (579)
T 3sqw_A 170 NKFFRFV-------------------DYKVLDEADRLLEIGFRDDLETISGILNEKNSK-SADNIKTLLFSATLDDKVQK 229 (579)
T ss_dssp HHHCTTC-------------------CEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSS-CTTCCEEEEEESSCCTHHHH
T ss_pred ccccccC-------------------CEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcc-cccCceEEEEeccCChHHHH
Confidence 2344555 9999999999987 4888988888888765432 234679999999998753 3
Q ss_pred HHHHHcccCCeEEEecCCCcc-----ceeEEEEeCCCccccccccccccccchhhhcccCCCCcHHHHHH-HHHHHH--H
Q 002135 452 HCMELANLSTLELIQNDGSPC-----AQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSY-LFAEMV--Q 523 (961)
Q Consensus 452 ~~~~L~~~~~~~~i~~~g~p~-----~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-ll~~l~--~ 523 (961)
.+.++.+......+....... ........ ............. +...+. .
T Consensus 230 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----------------------~~~~~~~~~~~~~~l~~~~~~~~ 286 (579)
T 3sqw_A 230 LANNIMNKKECLFLDTVDKNEPEAHERIDQSVVI-----------------------SEKFANSIFAAVEHIKKQIKERD 286 (579)
T ss_dssp HTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEE-----------------------ESSTTHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCceEEEeecCccccccccccceEEEE-----------------------ecchhhhHHHHHHHHHHHHhhcC
Confidence 333333322122221111000 00000000 0001111112222 222222 2
Q ss_pred CCCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEeccccccccccCCcc
Q 002135 524 HGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHID 603 (961)
Q Consensus 524 ~g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~aLe~GIDIp~vd 603 (961)
.+.++||||+|++.|+.++..|++.+.. +..+..+||++++.+|.++++.|++|+.+|||||+++++|||+|+++
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~-----~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~ 361 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFKK-----DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVH 361 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHTT-----TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCC
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhcC-----CCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCC
Confidence 3679999999999999999998875431 34688999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCHhhHHHHhccCCCCCCCceEEEEeeCCcchhHHHhchHHhhcCCCcccccCCCCHH
Q 002135 604 VTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHK 669 (961)
Q Consensus 604 ~VI~~~~P~s~~sy~QR~GRAGR~g~~g~~i~l~~~~~~d~~~~~~~e~l~~~~ie~~~~~~~n~~ 669 (961)
+||++++|.+..+|+||+|||||.|++|.+++++.. .|..+.+..++....+++.......+..
T Consensus 362 ~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~--~e~~~~~~l~~~~~~~~~~~~~~~~~~~ 425 (579)
T 3sqw_A 362 EVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICK--DELPFVRELEDAKNIVIAKQEKYEPSEE 425 (579)
T ss_dssp EEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEG--GGHHHHHHHHHHHCCCCCEEEEECCCHH
T ss_pred EEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcc--cHHHHHHHHHHHhCCCcccccCCCccHH
Confidence 999999999999999999999999999999988754 4666777777766666654443333333
No 5
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.8e-46 Score=431.51 Aligned_cols=355 Identities=17% Similarity=0.161 Sum_probs=262.9
Q ss_pred EeeecCCcccccccCCccccHHHHHHHHhCCCCCCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcCC--
Q 002135 222 HVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDL-- 299 (961)
Q Consensus 222 ~~~~~p~~~~~f~~l~~~L~~~l~~~L~~~g~~~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~~-- 299 (961)
.....|.+..+|.++ +|++.+.++|+..||..|+++|.++|+.+++|+|+++++|||||||++|++|++..+....
T Consensus 6 ~~~~~p~~~~~f~~~--~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~ 83 (417)
T 2i4i_A 6 TGNNCPPHIESFSDV--EMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPG 83 (417)
T ss_dssp ESTTCCCCCSSGGGS--CCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCcCCcccCCHhhC--CCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhcccc
Confidence 345678888889999 6999999999999999999999999999999999999999999999999999998875422
Q ss_pred -----------------CCeEEEEcccHHHHHHHHHHHHHhHhhCCCCccEEEEcCCCcH-HHHHHHhcCCcEEEeChhH
Q 002135 300 -----------------SSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQ-KDRMWLRDNARLLITNPDM 361 (961)
Q Consensus 300 -----------------~~~aLvl~PtraLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~-~~r~~l~~~~~IlItTPe~ 361 (961)
++++||++||++|+.|++++++++....+ +.+..+.|+... .+...+..+++|+|+||++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~ 161 (417)
T 2i4i_A 84 EALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSR--VRPCVVYGGADIGQQIRDLERGCHLLVATPGR 161 (417)
T ss_dssp HHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSS--CCEEEECSSSCHHHHHHHHTTCCSEEEECHHH
T ss_pred chhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCC--ceEEEEECCCCHHHHHHHhhCCCCEEEEChHH
Confidence 25799999999999999999999876544 667777776654 4445566789999999999
Q ss_pred HHHhhcCCCchhHHHhhhhhhhhhhcchhhhhhhhcceeEEEEecchhhhc-ccchHHHHHHHHHHHHhhcccCCCCcEE
Q 002135 362 LHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKG-AFGCHTALILRRLCRLCSHVYGSDPSFV 440 (961)
Q Consensus 362 L~~~lL~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~i~~VVIDEaH~~~~-~fg~~~~~ilrrL~~~~~~~~~~~~q~I 440 (961)
|...+.... ..+.++ ++||+||||++.+ +|+..+..++... ........|++
T Consensus 162 l~~~l~~~~----~~~~~~-------------------~~iViDEah~~~~~~~~~~~~~i~~~~----~~~~~~~~~~i 214 (417)
T 2i4i_A 162 LVDMMERGK----IGLDFC-------------------KYLVLDEADRMLDMGFEPQIRRIVEQD----TMPPKGVRHTM 214 (417)
T ss_dssp HHHHHHTTS----BCCTTC-------------------CEEEESSHHHHHHTTCHHHHHHHHTSS----SCCCBTTBEEE
T ss_pred HHHHHHcCC----cChhhC-------------------cEEEEEChhHhhccCcHHHHHHHHHhc----cCCCcCCcEEE
Confidence 976652111 123334 9999999999876 3555554443211 11011256899
Q ss_pred EeccCCCChH-HHHHHHcccCCeEEEecCCC-ccceeEEEEeCCCccccccccccccccchhhhcccCCCCcHHHHHHHH
Q 002135 441 FSTATSANPR-EHCMELANLSTLELIQNDGS-PCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLF 518 (961)
Q Consensus 441 ~lSATl~n~~-e~~~~L~~~~~~~~i~~~g~-p~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 518 (961)
++|||+++.. ..+..+.+......+...+. +......+.+.+ ...+...+..++
T Consensus 215 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------------------~~~~~~~l~~~l 270 (417)
T 2i4i_A 215 MFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVE------------------------ESDKRSFLLDLL 270 (417)
T ss_dssp EEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSEEEEEEECC------------------------GGGHHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCceEEEEEec------------------------cHhHHHHHHHHH
Confidence 9999997543 33334433221111111111 111111111110 112222233333
Q ss_pred HHHHHCCCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEeccccccccc
Q 002135 519 AEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGID 598 (961)
Q Consensus 519 ~~l~~~g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~aLe~GID 598 (961)
... ..+.++||||++++.++.+++.|++ .+..+..+||++++++|.++++.|++|+.++||||+++++|||
T Consensus 271 ~~~-~~~~~~lVf~~~~~~~~~l~~~L~~--------~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid 341 (417)
T 2i4i_A 271 NAT-GKDSLTLVFVETKKGADSLEDFLYH--------EGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLD 341 (417)
T ss_dssp HTC-CTTCEEEEECSSHHHHHHHHHHHHH--------TTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSC
T ss_pred Hhc-CCCCeEEEEECCHHHHHHHHHHHHH--------CCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCC
Confidence 221 2357899999999999999998876 3457899999999999999999999999999999999999999
Q ss_pred cCCccEEEEeCCCCCHhhHHHHhccCCCCCCCceEEEEeeCC
Q 002135 599 VGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEG 640 (961)
Q Consensus 599 Ip~vd~VI~~~~P~s~~sy~QR~GRAGR~g~~g~~i~l~~~~ 640 (961)
+|++++||++++|.|..+|+||+||+||.|++|.+++++...
T Consensus 342 ip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 383 (417)
T 2i4i_A 342 ISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNER 383 (417)
T ss_dssp CCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGG
T ss_pred cccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccc
Confidence 999999999999999999999999999999999999887543
No 6
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=3e-46 Score=430.80 Aligned_cols=365 Identities=18% Similarity=0.255 Sum_probs=275.8
Q ss_pred ccccccCCccccHHHHHHHHhCCCCCCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcC-CCCeEEEEcc
Q 002135 230 KAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHD-LSSSALYMFP 308 (961)
Q Consensus 230 ~~~f~~l~~~L~~~l~~~L~~~g~~~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~-~~~~aLvl~P 308 (961)
..+|.++ +|++.+.++|+++||.+|+++|.++++.+++|+++++++|||||||++|++|+++.+... .+.++||++|
T Consensus 36 ~~~f~~~--~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P 113 (410)
T 2j0s_A 36 TPTFDTM--GLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAP 113 (410)
T ss_dssp CCSGGGG--CCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECS
T ss_pred CCCHhhc--CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcC
Confidence 4568887 699999999999999999999999999999999999999999999999999999887532 4678999999
Q ss_pred cHHHHHHHHHHHHHhHhhCCCCccEEEEcCCCcHH-HHHHHhcCCcEEEeChhHHHHhhcCCCchhHHHhhhhhhhhhhc
Q 002135 309 TKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQK-DRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSL 387 (961)
Q Consensus 309 traLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~~-~r~~l~~~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~~~~ 387 (961)
|++|+.|+.+++.++....+ +.+..+.|+.... +...+..+++|+|+||++|.+.+... ...+.+
T Consensus 114 t~~L~~q~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~----~~~~~~-------- 179 (410)
T 2j0s_A 114 TRELAVQIQKGLLALGDYMN--VQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRR----SLRTRA-------- 179 (410)
T ss_dssp SHHHHHHHHHHHHHHTTTTT--CCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTT----SSCCTT--------
T ss_pred cHHHHHHHHHHHHHHhccCC--eEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhC----CccHhh--------
Confidence 99999999999999876554 6677777766544 44556678999999999997765211 111233
Q ss_pred chhhhhhhhcceeEEEEecchhhhc-ccchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCChHH-HHHHHcccCCeEEE
Q 002135 388 VTTEVYLIFLFIRFVVIDEAHAYKG-AFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPRE-HCMELANLSTLELI 465 (961)
Q Consensus 388 ~~~~~~~~~~~i~~VVIDEaH~~~~-~fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~~e-~~~~L~~~~~~~~i 465 (961)
+++||+||||++.+ +|...+..+++ . .....|++++|||+++... ....+.. +...+
T Consensus 180 -----------~~~vViDEah~~~~~~~~~~~~~i~~-------~-~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~ 238 (410)
T 2j0s_A 180 -----------IKMLVLDEADEMLNKGFKEQIYDVYR-------Y-LPPATQVVLISATLPHEILEMTNKFMT--DPIRI 238 (410)
T ss_dssp -----------CCEEEEETHHHHTSTTTHHHHHHHHT-------T-SCTTCEEEEEESCCCHHHHTTGGGTCS--SCEEE
T ss_pred -----------eeEEEEccHHHHHhhhhHHHHHHHHH-------h-CccCceEEEEEcCCCHHHHHHHHHHcC--CCEEE
Confidence 39999999999876 34444333322 1 2456799999999964321 1111221 11122
Q ss_pred ecCC---CccceeEEEEeCCCccccccccccccccchhhhcccCCCCcHHHHHHHHHHHHHCCCcEEEEecChHHHHHHH
Q 002135 466 QNDG---SPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVL 542 (961)
Q Consensus 466 ~~~g---~p~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~k~IVF~~sr~~ae~l~ 542 (961)
.... ........+.. ......+...+..++... .+.++||||++++.++.++
T Consensus 239 ~~~~~~~~~~~~~~~~~~-----------------------~~~~~~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~ 293 (410)
T 2j0s_A 239 LVKRDELTLEGIKQFFVA-----------------------VEREEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLT 293 (410)
T ss_dssp CCCGGGCSCTTEEEEEEE-----------------------ESSTTHHHHHHHHHHHHH--TSSEEEEECSSHHHHHHHH
T ss_pred EecCccccCCCceEEEEE-----------------------eCcHHhHHHHHHHHHHhc--CCCcEEEEEcCHHHHHHHH
Confidence 1111 01111111110 111112333444444432 3469999999999999999
Q ss_pred HHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEeccccccccccCCccEEEEeCCCCCHhhHHHHhc
Q 002135 543 SYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAG 622 (961)
Q Consensus 543 ~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~aLe~GIDIp~vd~VI~~~~P~s~~sy~QR~G 622 (961)
+.|++ .+..+..+||++++.+|+++++.|++|+.++||||+++++|+|+|++++||++++|.+..+|+||+|
T Consensus 294 ~~L~~--------~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~G 365 (410)
T 2j0s_A 294 EKMRE--------ANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIG 365 (410)
T ss_dssp HHHHH--------TTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHT
T ss_pred HHHHh--------CCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcc
Confidence 88876 3456889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCceEEEEeeCCcchhHHHhchHHhhcCCCcccccCCC
Q 002135 623 RSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQ 666 (961)
Q Consensus 623 RAGR~g~~g~~i~l~~~~~~d~~~~~~~e~l~~~~ie~~~~~~~ 666 (961)
|+||.|++|.+++++.. .|....+..+.+++..+++..++..
T Consensus 366 R~gR~g~~g~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~ 407 (410)
T 2j0s_A 366 RSGRYGRKGVAINFVKN--DDIRILRDIEQYYSTQIDEMPMNVA 407 (410)
T ss_dssp TSSGGGCCEEEEEEEEG--GGHHHHHHHHHHTTCCCEECCSCCT
T ss_pred cccCCCCceEEEEEecH--HHHHHHHHHHHHhCCCceecccchh
Confidence 99999999999987754 4566777888999998888877654
No 7
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=5.4e-46 Score=459.66 Aligned_cols=419 Identities=21% Similarity=0.286 Sum_probs=319.1
Q ss_pred ccccCCccccHHHHHHHHhCCCCCCcHHHHHHHHH-HhCCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccH
Q 002135 232 VLVEIPDALLDNTKSALKSTGISKLYSHQAESIMA-SLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTK 310 (961)
Q Consensus 232 ~f~~l~~~L~~~l~~~L~~~g~~~l~~~Q~~ai~~-il~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~Ptr 310 (961)
+|.++ +|++.+.+.++++||..|+++|.++++. +.+|+++++++|||||||++|.+|+++.+... +.+++|++|++
T Consensus 2 ~f~~l--~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-~~~~l~i~P~r 78 (720)
T 2zj8_A 2 RVDEL--RVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-GGKAVYIVPLK 78 (720)
T ss_dssp BGGGC--CSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH-CSEEEEECSSG
T ss_pred cHhhc--CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-CCEEEEEcCcH
Confidence 47777 5999999999999999999999999998 88999999999999999999999999888743 67999999999
Q ss_pred HHHHHHHHHHHHhHhhCCCCccEEEEcCCCcHHHHHHHhcCCcEEEeChhHHHHhhcCCCchhHHHhhhhhhhhhhcchh
Q 002135 311 ALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTT 390 (961)
Q Consensus 311 aLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~~~r~~l~~~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~~~~~~~ 390 (961)
+|+.|++++++++.. + ++.++.++|+.....+ ...+++|+|+||++|...+.. . ...++++
T Consensus 79 aLa~q~~~~~~~l~~-~--g~~v~~~~G~~~~~~~--~~~~~~Iiv~Tpe~l~~~~~~-~---~~~l~~~---------- 139 (720)
T 2zj8_A 79 ALAEEKFQEFQDWEK-I--GLRVAMATGDYDSKDE--WLGKYDIIIATAEKFDSLLRH-G---SSWIKDV---------- 139 (720)
T ss_dssp GGHHHHHHHTGGGGG-G--TCCEEEECSCSSCCCG--GGGGCSEEEECHHHHHHHHHH-T---CTTGGGE----------
T ss_pred HHHHHHHHHHHHHHh-c--CCEEEEecCCCCcccc--ccCCCCEEEECHHHHHHHHHc-C---hhhhhcC----------
Confidence 999999999965433 3 4788999998765442 234689999999999765421 1 1124444
Q ss_pred hhhhhhcceeEEEEecchhhhc-ccchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCChHHHHHHHcccCCeEEEecCC
Q 002135 391 EVYLIFLFIRFVVIDEAHAYKG-AFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDG 469 (961)
Q Consensus 391 ~~~~~~~~i~~VVIDEaH~~~~-~fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~~e~~~~L~~~~~~~~i~~~g 469 (961)
++|||||+|++.+ .+|.++..++.+++ + ++|+|++|||++|+.+...++. ...+..++
T Consensus 140 ---------~~vIiDE~H~l~~~~r~~~~~~ll~~l~-------~-~~~ii~lSATl~n~~~~~~~l~----~~~~~~~~ 198 (720)
T 2zj8_A 140 ---------KILVADEIHLIGSRDRGATLEVILAHML-------G-KAQIIGLSATIGNPEELAEWLN----AELIVSDW 198 (720)
T ss_dssp ---------EEEEEETGGGGGCTTTHHHHHHHHHHHB-------T-TBEEEEEECCCSCHHHHHHHTT----EEEEECCC
T ss_pred ---------CEEEEECCcccCCCcccHHHHHHHHHhh-------c-CCeEEEEcCCcCCHHHHHHHhC----CcccCCCC
Confidence 9999999999987 59999998888775 1 5799999999999887777762 45677778
Q ss_pred CccceeEEEEeCCCccccccccccccccchhhhcccCCCCcHHHHHHHHHHHHHCCCcEEEEecChHHHHHHHHHHHHHH
Q 002135 470 SPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREIL 549 (961)
Q Consensus 470 ~p~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~k~IVF~~sr~~ae~l~~~L~~~l 549 (961)
+|.+....+.+.+...... .. ....... ..++.+....+.++||||++++.|+.++..+.+.+
T Consensus 199 rp~~l~~~~~~~~~~~~~~---~~----------~~~~~~~----~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~ 261 (720)
T 2zj8_A 199 RPVKLRRGVFYQGFVTWED---GS----------IDRFSSW----EELVYDAIRKKKGALIFVNMRRKAERVALELSKKV 261 (720)
T ss_dssp CSSEEEEEEEETTEEEETT---SC----------EEECSST----THHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCCcceEEEEeCCeeeccc---cc----------hhhhhHH----HHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHHHH
Confidence 8877666555443221100 00 0001111 23344445677899999999999999999988754
Q ss_pred HhhC-------------------------CcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEeccccccccccCCccE
Q 002135 550 EETA-------------------------PHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDV 604 (961)
Q Consensus 550 ~~~~-------------------------~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~aLe~GIDIp~vd~ 604 (961)
.... ..+..++..|||++++++|+.+++.|++|.++|||||+++++|||+|++++
T Consensus 262 ~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~ 341 (720)
T 2zj8_A 262 KSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRV 341 (720)
T ss_dssp GGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEE
T ss_pred HHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEE
Confidence 3210 011235899999999999999999999999999999999999999999999
Q ss_pred EEE----eC----CCCCHhhHHHHhccCCCCC--CCceEEEEeeCCcchhHHHhchHHhhcCCCcccccCCCCHHHHHHH
Q 002135 605 TLH----LG----FPGSIASLWQQAGRSGRRE--RPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQH 674 (961)
Q Consensus 605 VI~----~~----~P~s~~sy~QR~GRAGR~g--~~g~~i~l~~~~~~d~~~~~~~e~l~~~~ie~~~~~~~n~~vl~~~ 674 (961)
||+ || .|.|..+|+||+|||||.| .+|.|++++...+.+.+ .+.++..++++......+...+..|
T Consensus 342 VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~----~~~~~~~~~~~i~s~l~~~~~l~~~ 417 (720)
T 2zj8_A 342 IIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREV----MNHYIFGKPEKLFSQLSNESNLRSQ 417 (720)
T ss_dssp EECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHHH----HHHHTTSCCCCCCCCTTCHHHHHHH
T ss_pred EEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHHHH----HHHHhcCCCCCcEeecCchhhHHHH
Confidence 998 65 5899999999999999997 46788887765543322 2345566667777777888899999
Q ss_pred HHHHHhcCCCChhhh-hhh----c-----------cCCHHHHHHHHHHCCccc-cCC
Q 002135 675 LVCAALEHPLSLIYD-EKY----F-----------GSGLSSGITTLKNRGYLS-SDP 714 (961)
Q Consensus 675 l~~aa~e~p~~~~~~-~~~----f-----------~~~~~~~l~~L~~~g~l~-~~~ 714 (961)
+.+...........+ ..+ | .+.+.++++.|.+.|++. .++
T Consensus 418 ll~~i~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~i~~~~~ 474 (720)
T 2zj8_A 418 VLALIATFGYSTVEEILKFISNTFYAYQRKDTYSLEEKIRNILYFLLENEFIEISLE 474 (720)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHTSHHHHHCSCCHHHHHHHHHHHHHHHHTTSEEECTT
T ss_pred HHHHHHhCCCCCHHHHHHHHHhChHHHhccchHHHHHHHHHHHHHHHHCCCeeECCC
Confidence 998877654321111 111 1 124778999999999998 443
No 8
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=3e-45 Score=452.91 Aligned_cols=429 Identities=18% Similarity=0.202 Sum_probs=316.2
Q ss_pred cccccCCccccHHHHHHHHhCCCCCCcHHHHHHHHH-HhCCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEccc
Q 002135 231 AVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMA-SLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPT 309 (961)
Q Consensus 231 ~~f~~l~~~L~~~l~~~L~~~g~~~l~~~Q~~ai~~-il~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~Pt 309 (961)
.+|.++ +|++.+.+.++++||..|+++|.++++. +.+|+++++++|||||||++|.+|+++.+..+ +.+++|++|+
T Consensus 8 ~~~~~l--~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-~~~il~i~P~ 84 (715)
T 2va8_A 8 MPIEDL--KLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN-GGKAIYVTPL 84 (715)
T ss_dssp CBGGGS--SSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-CSEEEEECSC
T ss_pred CcHHHc--CCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC-CCeEEEEeCc
Confidence 468888 5999999999999999999999999999 78999999999999999999999999887743 6799999999
Q ss_pred HHHHHHHHHHHHHhHhhCCCCccEEEEcCCCcHHHHHHHhcCCcEEEeChhHHHHhhcCCCchhHHHhhhhhhhhhhcch
Q 002135 310 KALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVT 389 (961)
Q Consensus 310 raLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~~~r~~l~~~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~~~~~~ 389 (961)
++|+.|++++++.+. .. ++.++...|+....++ .+ .+++|+|+||++|...+.. . ...++++
T Consensus 85 r~La~q~~~~~~~~~-~~--g~~v~~~~G~~~~~~~-~~-~~~~Iiv~Tpe~l~~~~~~-~---~~~l~~~--------- 146 (715)
T 2va8_A 85 RALTNEKYLTFKDWE-LI--GFKVAMTSGDYDTDDA-WL-KNYDIIITTYEKLDSLWRH-R---PEWLNEV--------- 146 (715)
T ss_dssp HHHHHHHHHHHGGGG-GG--TCCEEECCSCSSSCCG-GG-GGCSEEEECHHHHHHHHHH-C---CGGGGGE---------
T ss_pred HHHHHHHHHHHHHhh-cC--CCEEEEEeCCCCCchh-hc-CCCCEEEEcHHHHHHHHhC-C---hhHhhcc---------
Confidence 999999999995443 33 4778889998765543 22 4789999999999765421 1 1224455
Q ss_pred hhhhhhhcceeEEEEecchhhhc-ccchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCChHHHHHHHcccCCeEEEecC
Q 002135 390 TEVYLIFLFIRFVVIDEAHAYKG-AFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQND 468 (961)
Q Consensus 390 ~~~~~~~~~i~~VVIDEaH~~~~-~fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~~e~~~~L~~~~~~~~i~~~ 468 (961)
++|||||+|++.+ .+|..+..++.+++ ++|+|++|||++|+.+...++. ...+..+
T Consensus 147 ----------~~vIiDE~H~l~~~~~~~~l~~i~~~~~---------~~~ii~lSATl~n~~~~~~~l~----~~~~~~~ 203 (715)
T 2va8_A 147 ----------NYFVLDELHYLNDPERGPVVESVTIRAK---------RRNLLALSATISNYKQIAKWLG----AEPVATN 203 (715)
T ss_dssp ----------EEEEECSGGGGGCTTTHHHHHHHHHHHH---------TSEEEEEESCCTTHHHHHHHHT----CEEEECC
T ss_pred ----------CEEEEechhhcCCcccchHHHHHHHhcc---------cCcEEEEcCCCCCHHHHHHHhC----CCccCCC
Confidence 9999999999886 58888888887775 4699999999999888777763 4567778
Q ss_pred CCccceeEEEEeCCCccccccccccccccchhhhcccCCCCcHHHHHHHHHHHHHCCCcEEEEecChHHHHHHHHHHHHH
Q 002135 469 GSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREI 548 (961)
Q Consensus 469 g~p~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~k~IVF~~sr~~ae~l~~~L~~~ 548 (961)
++|.+....+...+........ ..... ....... ......++.+....+.++||||++++.|+.++..|.+.
T Consensus 204 ~r~~~l~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~ 275 (715)
T 2va8_A 204 WRPVPLIEGVIYPERKKKEYNV--IFKDN--TTKKVHG----DDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANY 275 (715)
T ss_dssp CCSSCEEEEEEEECSSTTEEEE--EETTS--CEEEEES----SSHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHT
T ss_pred CCCCCceEEEEecCCcccceee--ecCcc--hhhhccc----chHHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHH
Confidence 8887766555443311000000 00000 0000000 12334555555667889999999999999999988764
Q ss_pred HHh----------------------------hCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEeccccccccccC
Q 002135 549 LEE----------------------------TAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVG 600 (961)
Q Consensus 549 l~~----------------------------~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~aLe~GIDIp 600 (961)
+.. ....+...+..|||++++++|+.+++.|++|.++|||||+++++|||+|
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip 355 (715)
T 2va8_A 276 MNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLP 355 (715)
T ss_dssp TTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCC
T ss_pred HhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCC
Confidence 321 0000123589999999999999999999999999999999999999999
Q ss_pred CccEEEE----eC-------CCCCHhhHHHHhccCCCCC--CCceEEEEeeCCcchhHHHhchHHhhcCCCcccccCCCC
Q 002135 601 HIDVTLH----LG-------FPGSIASLWQQAGRSGRRE--RPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQN 667 (961)
Q Consensus 601 ~vd~VI~----~~-------~P~s~~sy~QR~GRAGR~g--~~g~~i~l~~~~~~d~~~~~~~e~l~~~~ie~~~~~~~n 667 (961)
++++||+ |+ .|.|.++|+||+|||||.| .+|.|++++..... +....+.++....+....+..+
T Consensus 356 ~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~---~~~~~~~~l~~~~e~~~s~l~~ 432 (715)
T 2va8_A 356 ARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKED---VDRVFKKYVLSDVEPIESKLGS 432 (715)
T ss_dssp BSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGG---HHHHHHHTTSSCCCCCCCSCCS
T ss_pred ceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCchH---HHHHHHHHHcCCCCCceecCCc
Confidence 9999999 88 8999999999999999997 47888877754331 1122344555666777778888
Q ss_pred HHHHHHHHHHHHhcCCCChhhhh-hh----cc------CCHHHHHHHHHHCCccccCC
Q 002135 668 HKVLEQHLVCAALEHPLSLIYDE-KY----FG------SGLSSGITTLKNRGYLSSDP 714 (961)
Q Consensus 668 ~~vl~~~l~~aa~e~p~~~~~~~-~~----f~------~~~~~~l~~L~~~g~l~~~~ 714 (961)
...+..|+.+...........+- .+ |. ..+.++++.|.+.|+|..++
T Consensus 433 ~~~l~~~~l~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~al~~L~~~g~i~~~~ 490 (715)
T 2va8_A 433 ERAFYTFLLGILSAEGNLSEKQLENFAYESLLAKQLVDVYFDRAIRWLLEHSFIKEEG 490 (715)
T ss_dssp HHHHHHHHHHHHHHHCSEEHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTSEEECS
T ss_pred hhHHHHHHHHHHhccccCCHHHHHHHHHhhHHHhhcchHHHHHHHHHHHHCcCEeecC
Confidence 88999999888766543211111 11 11 23788999999999998764
No 9
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=5.2e-45 Score=416.97 Aligned_cols=368 Identities=16% Similarity=0.198 Sum_probs=274.2
Q ss_pred cccccCCccccHHHHHHHHhCCCCCCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcCC-CCeEEEEccc
Q 002135 231 AVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDL-SSSALYMFPT 309 (961)
Q Consensus 231 ~~f~~l~~~L~~~l~~~L~~~g~~~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~~-~~~aLvl~Pt 309 (961)
..|.++ +|++.+.++|+++||..|+++|.++++.+++|+++++++|||+|||++|++|++..+.... +.++||++||
T Consensus 8 ~~f~~~--~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~ 85 (391)
T 1xti_A 8 SGFRDF--LLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHT 85 (391)
T ss_dssp -CGGGG--CCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSC
T ss_pred CChhhc--CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCC
Confidence 357777 6999999999999999999999999999999999999999999999999999999876543 5689999999
Q ss_pred HHHHHHHHHHHHHhHhhCCCCccEEEEcCCCcHHHH-HHHhc-CCcEEEeChhHHHHhhcCCCchhHHHhhhhhhhhhhc
Q 002135 310 KALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDR-MWLRD-NARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSL 387 (961)
Q Consensus 310 raLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~~~r-~~l~~-~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~~~~ 387 (961)
++|+.|+.+.+.++..... ++.+..+.|+...... ..+.. .++|+|+||++|...+... ...+.++
T Consensus 86 ~~L~~q~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~----~~~~~~~------- 153 (391)
T 1xti_A 86 RELAFQISKEYERFSKYMP-NVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK----SLNLKHI------- 153 (391)
T ss_dssp HHHHHHHHHHHHHHTTTCT-TCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTT----SSCCTTC-------
T ss_pred HHHHHHHHHHHHHHHhhCC-CeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcC----Ccccccc-------
Confidence 9999999999999876542 4778888888765443 33433 4799999999997654211 1123334
Q ss_pred chhhhhhhhcceeEEEEecchhhhcccchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCChH-HHHHHHcccCCeEEEe
Q 002135 388 VTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPR-EHCMELANLSTLELIQ 466 (961)
Q Consensus 388 ~~~~~~~~~~~i~~VVIDEaH~~~~~fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~~-e~~~~L~~~~~~~~i~ 466 (961)
++||+||||++.+. ..+...+..+... .....|++++|||+++.. +.+..+.+.. ..+..
T Consensus 154 ------------~~vViDEaH~~~~~--~~~~~~~~~~~~~----~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-~~~~~ 214 (391)
T 1xti_A 154 ------------KHFILDECDKMLEQ--LDMRRDVQEIFRM----TPHEKQVMMFSATLSKEIRPVCRKFMQDP-MEIFV 214 (391)
T ss_dssp ------------SEEEECSHHHHTSS--HHHHHHHHHHHHT----SCSSSEEEEEESSCCSTHHHHHHHHCSSC-EEEEC
T ss_pred ------------CEEEEeCHHHHhhc--cchHHHHHHHHhh----CCCCceEEEEEeeCCHHHHHHHHHHcCCC-eEEEe
Confidence 99999999999752 1222222233222 234679999999998754 3344444322 11111
Q ss_pred cC-CCc--cceeEEEEeCCCccccccccccccccchhhhcccCCCCcHHHHHHHHHHHHHCCCcEEEEecChHHHHHHHH
Q 002135 467 ND-GSP--CAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLS 543 (961)
Q Consensus 467 ~~-g~p--~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~k~IVF~~sr~~ae~l~~ 543 (961)
.. ... ......+.. .....+...+..++... .+.++||||++++.++.+++
T Consensus 215 ~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~ 268 (391)
T 1xti_A 215 DDETKLTLHGLQQYYVK------------------------LKDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQ 268 (391)
T ss_dssp CCCCCCCCTTCEEEEEE------------------------CCGGGHHHHHHHHHHHS--CCSEEEEECSCHHHHHHHHH
T ss_pred cCccccCcccceEEEEE------------------------cCchhHHHHHHHHHHhc--CCCcEEEEeCcHHHHHHHHH
Confidence 11 110 011111110 01112233334444332 56799999999999999999
Q ss_pred HHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEeccccccccccCCccEEEEeCCCCCHhhHHHHhcc
Q 002135 544 YTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGR 623 (961)
Q Consensus 544 ~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~aLe~GIDIp~vd~VI~~~~P~s~~sy~QR~GR 623 (961)
.|++ .+..+..+||++++++|+++++.|++|+.++||||+++++|+|+|++++||+++.|.|..+|+||+||
T Consensus 269 ~L~~--------~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR 340 (391)
T 1xti_A 269 LLVE--------QNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVAR 340 (391)
T ss_dssp HHHH--------TTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCB
T ss_pred HHHh--------CCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhccc
Confidence 8876 34568899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceEEEEeeCCcchhHHHhchHHhhcCCCcccccCCC
Q 002135 624 SGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQ 666 (961)
Q Consensus 624 AGR~g~~g~~i~l~~~~~~d~~~~~~~e~l~~~~ie~~~~~~~ 666 (961)
+||.|++|.+++++.. ..+..+.+..++.+..+++++..+..
T Consensus 341 ~~R~g~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (391)
T 1xti_A 341 AGRFGTKGLAITFVSD-ENDAKILNDVQDRFEVNISELPDEID 382 (391)
T ss_dssp CSSSCCCCEEEEEECS-HHHHHHHHHHHHHTTCCCEECCSCCC
T ss_pred ccCCCCceEEEEEEcc-cchHHHHHHHHHHhcCChhhCCcccc
Confidence 9999999999987753 34556677778888887776665533
No 10
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1.3e-44 Score=415.50 Aligned_cols=365 Identities=19% Similarity=0.251 Sum_probs=272.0
Q ss_pred cccccccCCccccHHHHHHHHhCCCCCCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcC-CCCeEEEEc
Q 002135 229 RKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHD-LSSSALYMF 307 (961)
Q Consensus 229 ~~~~f~~l~~~L~~~l~~~L~~~g~~~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~-~~~~aLvl~ 307 (961)
...+|.++ +|++.+.++|.+.||..|+++|.++++.+++|+++++++|||||||++|++|++..+... .+.++||++
T Consensus 19 ~~~~f~~~--~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 96 (400)
T 1s2m_A 19 KGNTFEDF--YLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMV 96 (400)
T ss_dssp --CCGGGG--CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEEC
T ss_pred ccCChhhc--CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEc
Confidence 34568888 699999999999999999999999999999999999999999999999999999987654 356899999
Q ss_pred ccHHHHHHHHHHHHHhHhhCCCCccEEEEcCCCcHHH-HHHHhcCCcEEEeChhHHHHhhcCCCchhHHHhhhhhhhhhh
Q 002135 308 PTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKD-RMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFS 386 (961)
Q Consensus 308 PtraLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~~~-r~~l~~~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~~~ 386 (961)
|+++|+.|+.+.++++....+ +.+..+.|+..... ...+..+++|+|+||++|...+.... ..+.++
T Consensus 97 P~~~L~~q~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~----~~~~~~------ 164 (400)
T 1s2m_A 97 PTRELALQTSQVVRTLGKHCG--ISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKV----ADLSDC------ 164 (400)
T ss_dssp SSHHHHHHHHHHHHHHTTTTT--CCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTC----SCCTTC------
T ss_pred CCHHHHHHHHHHHHHHhcccC--ceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCC----cccccC------
Confidence 999999999999999876554 66777777766543 34455678999999999876542111 123333
Q ss_pred cchhhhhhhhcceeEEEEecchhhhcccchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCChH-HHHHHHcccCCeEEE
Q 002135 387 LVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPR-EHCMELANLSTLELI 465 (961)
Q Consensus 387 ~~~~~~~~~~~~i~~VVIDEaH~~~~~fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~~-e~~~~L~~~~~~~~i 465 (961)
++||+||||++.+ ..+...+..+... .....|++++|||++... +.+...... ...+
T Consensus 165 -------------~~vIiDEaH~~~~---~~~~~~~~~i~~~----~~~~~~~i~lSAT~~~~~~~~~~~~~~~--~~~~ 222 (400)
T 1s2m_A 165 -------------SLFIMDEADKMLS---RDFKTIIEQILSF----LPPTHQSLLFSATFPLTVKEFMVKHLHK--PYEI 222 (400)
T ss_dssp -------------CEEEEESHHHHSS---HHHHHHHHHHHTT----SCSSCEEEEEESCCCHHHHHHHHHHCSS--CEEE
T ss_pred -------------CEEEEeCchHhhh---hchHHHHHHHHHh----CCcCceEEEEEecCCHHHHHHHHHHcCC--CeEE
Confidence 9999999999865 2233333333322 245679999999986432 223333221 1111
Q ss_pred ecCCC--ccceeEEEEeCCCccccccccccccccchhhhcccCCCCcHHHHHHHHHHHHHCCCcEEEEecChHHHHHHHH
Q 002135 466 QNDGS--PCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLS 543 (961)
Q Consensus 466 ~~~g~--p~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~k~IVF~~sr~~ae~l~~ 543 (961)
..... .......+.. .....+...+..++.. ..+.++||||++++.++.+++
T Consensus 223 ~~~~~~~~~~~~~~~~~------------------------~~~~~k~~~l~~~~~~--~~~~~~lVf~~~~~~~~~l~~ 276 (400)
T 1s2m_A 223 NLMEELTLKGITQYYAF------------------------VEERQKLHCLNTLFSK--LQINQAIIFCNSTNRVELLAK 276 (400)
T ss_dssp SCCSSCBCTTEEEEEEE------------------------CCGGGHHHHHHHHHHH--SCCSEEEEECSSHHHHHHHHH
T ss_pred EeccccccCCceeEEEE------------------------echhhHHHHHHHHHhh--cCCCcEEEEEecHHHHHHHHH
Confidence 11111 0111111110 0011222333333332 145699999999999999999
Q ss_pred HHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEeccccccccccCCccEEEEeCCCCCHhhHHHHhcc
Q 002135 544 YTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGR 623 (961)
Q Consensus 544 ~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~aLe~GIDIp~vd~VI~~~~P~s~~sy~QR~GR 623 (961)
.|++ .+..+..+||++++.+|+++++.|++|+.++||||+++++|+|+|++++||++++|.|..+|+||+||
T Consensus 277 ~L~~--------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR 348 (400)
T 1s2m_A 277 KITD--------LGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGR 348 (400)
T ss_dssp HHHH--------HTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCB
T ss_pred HHHh--------cCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcch
Confidence 8876 34578899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceEEEEeeCCcchhHHHhchHHhhcCCCcccccCC
Q 002135 624 SGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDA 665 (961)
Q Consensus 624 AGR~g~~g~~i~l~~~~~~d~~~~~~~e~l~~~~ie~~~~~~ 665 (961)
+||.|++|.+++++.. .|...++..++.++.++++...+.
T Consensus 349 ~gR~g~~g~~~~l~~~--~~~~~~~~i~~~~~~~~~~~~~~~ 388 (400)
T 1s2m_A 349 SGRFGHLGLAINLINW--NDRFNLYKIEQELGTEIAAIPATI 388 (400)
T ss_dssp SSCTTCCEEEEEEECG--GGHHHHHHHHHHHTCCCEECCSSC
T ss_pred hcCCCCCceEEEEecc--chHHHHHHHHHHhCCCcccccccc
Confidence 9999999999987744 455667777888888777665443
No 11
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.7e-45 Score=424.21 Aligned_cols=368 Identities=17% Similarity=0.257 Sum_probs=258.2
Q ss_pred CCcccccccCCccccHHHHHHHHhCCCCCCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcC-CCCeEEE
Q 002135 227 SARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHD-LSSSALY 305 (961)
Q Consensus 227 p~~~~~f~~l~~~L~~~l~~~L~~~g~~~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~-~~~~aLv 305 (961)
+.....|.++ ++++.+.+.|+++|+..|+++|.++++.+++|+++++++|||||||++|++|+++.+... .+.++||
T Consensus 36 ~~~~~~f~~~--~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~li 113 (414)
T 3eiq_A 36 NEIVDSFDDM--NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALV 113 (414)
T ss_dssp CCCCCCGGGG--CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEE
T ss_pred cchhcCHhhC--CCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEE
Confidence 3444568777 699999999999999999999999999999999999999999999999999999988754 4678999
Q ss_pred EcccHHHHHHHHHHHHHhHhhCCCCccEEEEcCCCcHH-HHHHHh-cCCcEEEeChhHHHHhhcCCCchhHHHhhhhhhh
Q 002135 306 MFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQK-DRMWLR-DNARLLITNPDMLHMSILPYHGQFSRILSNLRLI 383 (961)
Q Consensus 306 l~PtraLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~~-~r~~l~-~~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~ 383 (961)
++||++|+.|+.+.+++++...+ ..+....|+.... +...+. .+++|+|+||++|.+.+.... ..+.+
T Consensus 114 l~P~~~L~~q~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~----~~~~~---- 183 (414)
T 3eiq_A 114 LAPTRELAQQIQKVVMALGDYMG--ASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRY----LSPKY---- 183 (414)
T ss_dssp ECSSHHHHHHHHHHHHHHGGGSC--CCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTS----SCSTT----
T ss_pred EeChHHHHHHHHHHHHHHhcccC--ceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCC----ccccc----
Confidence 99999999999999999887654 5566656655443 333344 568999999999976652110 11223
Q ss_pred hhhcchhhhhhhhcceeEEEEecchhhhc-ccchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCChHH-HHHHHcccCC
Q 002135 384 AFSLVTTEVYLIFLFIRFVVIDEAHAYKG-AFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPRE-HCMELANLST 461 (961)
Q Consensus 384 ~~~~~~~~~~~~~~~i~~VVIDEaH~~~~-~fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~~e-~~~~L~~~~~ 461 (961)
+++||+||||++.+ +++..+..++..+ ..+.|+|++|||+++... ....+...
T Consensus 184 ---------------~~~vViDEah~~~~~~~~~~~~~~~~~~--------~~~~~~i~~SAT~~~~~~~~~~~~~~~-- 238 (414)
T 3eiq_A 184 ---------------IKMFVLDEADEMLSRGFKDQIYDIFQKL--------NSNTQVVLLSATMPSDVLEVTKKFMRD-- 238 (414)
T ss_dssp ---------------CCEEEECSHHHHHHTTTHHHHHHHHTTS--------CTTCEEEEECSCCCHHHHHHHTTTCSS--
T ss_pred ---------------CcEEEEECHHHhhccCcHHHHHHHHHhC--------CCCCeEEEEEEecCHHHHHHHHHHcCC--
Confidence 39999999999865 3555544433222 457899999999864332 22222221
Q ss_pred eEEEecCCCc---cceeEEEEeCCCccccccccccccccchhhhcccCCCCcHHHHHHHHHHHHHCCCcEEEEecChHHH
Q 002135 462 LELIQNDGSP---CAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLC 538 (961)
Q Consensus 462 ~~~i~~~g~p---~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~k~IVF~~sr~~a 538 (961)
...+...... ......+.. ......+...+..++... .+.++||||++++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~ 293 (414)
T 3eiq_A 239 PIRILVKKEELTLEGIRQFYIN-----------------------VEREEWKLDTLCDLYETL--TITQAVIFINTRRKV 293 (414)
T ss_dssp CEEECCCCCCCCTTSCCEEEEE-----------------------CSSSTTHHHHHHHHHHSS--CCSSCEEECSCHHHH
T ss_pred CEEEEecCCccCCCCceEEEEE-----------------------eChHHhHHHHHHHHHHhC--CCCcEEEEeCCHHHH
Confidence 2222211110 011111110 111122333333333221 346999999999999
Q ss_pred HHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEeccccccccccCCccEEEEeCCCCCHhhHH
Q 002135 539 ELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLW 618 (961)
Q Consensus 539 e~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~aLe~GIDIp~vd~VI~~~~P~s~~sy~ 618 (961)
+.+++.|++ .+..+..+||++++++|.++++.|++|+.++||||+++++|||+|++++||++++|.|..+|+
T Consensus 294 ~~l~~~l~~--------~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~ 365 (414)
T 3eiq_A 294 DWLTEKMHA--------RDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYI 365 (414)
T ss_dssp HHHHHHHHT--------TTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCSSTHHHH
T ss_pred HHHHHHHHh--------cCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCCCHHHhh
Confidence 999988865 345688999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCCCCceEEEEeeCCcchhHHHhchHHhhcCCCcccccCCC
Q 002135 619 QQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQ 666 (961)
Q Consensus 619 QR~GRAGR~g~~g~~i~l~~~~~~d~~~~~~~e~l~~~~ie~~~~~~~ 666 (961)
||+||+||.|++|.+++++.. .+....+.++.+++..+++..++..
T Consensus 366 Qr~GR~gR~g~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (414)
T 3eiq_A 366 HRIGRGGRFGRKGVAINMVTE--EDKRTLRDIETFYNTSIEEMPLNVA 411 (414)
T ss_dssp HHSCCC-------CEEEEECS--THHHHHHHHHHHTTCCCEECCC---
T ss_pred hhcCcccCCCCCceEEEEEcH--HHHHHHHHHHHHHcCCccccChhhh
Confidence 999999999999999988754 4566677788888988888766543
No 12
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.5e-44 Score=405.60 Aligned_cols=357 Identities=19% Similarity=0.241 Sum_probs=270.8
Q ss_pred ccccccCCccccHHHHHHHHhCCCCCCcHHHHHHHHHHhCC-CcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcc
Q 002135 230 KAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAG-KNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFP 308 (961)
Q Consensus 230 ~~~f~~l~~~L~~~l~~~L~~~g~~~l~~~Q~~ai~~il~G-~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~P 308 (961)
..+|.++ +|++.+.++|++.|+..|+++|.++++.+++| +++++++|||||||++|++|++..+...++.++||++|
T Consensus 5 ~~~f~~~--~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P 82 (367)
T 1hv8_A 5 YMNFNEL--NLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTP 82 (367)
T ss_dssp CCCGGGS--SCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECS
T ss_pred cCchhhc--CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcC
Confidence 3468888 69999999999999999999999999999988 69999999999999999999999887767889999999
Q ss_pred cHHHHHHHHHHHHHhHhhCCCCccEEEEcCCCcHHHHHHHhcCCcEEEeChhHHHHhhcCCCchhHHHhhhhhhhhhhcc
Q 002135 309 TKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLV 388 (961)
Q Consensus 309 traLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~~~r~~l~~~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~~~~~ 388 (961)
+++|+.|+.+++.++.... .+.+....|+...........+++|+|+||++|...+.... ..+.++
T Consensus 83 ~~~L~~q~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~----~~~~~~-------- 148 (367)
T 1hv8_A 83 TRELAIQVADEIESLKGNK--NLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGT----LNLKNV-------- 148 (367)
T ss_dssp CHHHHHHHHHHHHHHHCSS--CCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTC----SCTTSC--------
T ss_pred CHHHHHHHHHHHHHHhCCC--CceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCC----cccccC--------
Confidence 9999999999999987643 36677777776655443344579999999999876542111 113333
Q ss_pred hhhhhhhhcceeEEEEecchhhhc-ccchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCChH-HHHHHHcccCCeEEEe
Q 002135 389 TTEVYLIFLFIRFVVIDEAHAYKG-AFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPR-EHCMELANLSTLELIQ 466 (961)
Q Consensus 389 ~~~~~~~~~~i~~VVIDEaH~~~~-~fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~~-e~~~~L~~~~~~~~i~ 466 (961)
++||+||||++.. .+...+..++ .. .....+++++|||+++.. +....+.+. ...+.
T Consensus 149 -----------~~iIiDEah~~~~~~~~~~~~~~~----~~----~~~~~~~i~~SAT~~~~~~~~~~~~~~~--~~~~~ 207 (367)
T 1hv8_A 149 -----------KYFILDEADEMLNMGFIKDVEKIL----NA----CNKDKRILLFSATMPREILNLAKKYMGD--YSFIK 207 (367)
T ss_dssp -----------CEEEEETHHHHHTTTTHHHHHHHH----HT----SCSSCEEEEECSSCCHHHHHHHHHHCCS--EEEEE
T ss_pred -----------CEEEEeCchHhhhhchHHHHHHHH----Hh----CCCCceEEEEeeccCHHHHHHHHHHcCC--CeEEE
Confidence 9999999999875 2433333222 21 245679999999997543 333334332 33332
Q ss_pred cCCCccceeEEEEeCCCccccccccccccccchhhhcccCCCCcHHHHHHHHHHHHHCCCcEEEEecChHHHHHHHHHHH
Q 002135 467 NDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTR 546 (961)
Q Consensus 467 ~~g~p~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~k~IVF~~sr~~ae~l~~~L~ 546 (961)
..... .....+.. . ........+...+...+.++||||++++.++.+++.|+
T Consensus 208 ~~~~~-~~~~~~~~------------------------~---~~~~~~~~l~~~l~~~~~~~lvf~~~~~~~~~l~~~L~ 259 (367)
T 1hv8_A 208 AKINA-NIEQSYVE------------------------V---NENERFEALCRLLKNKEFYGLVFCKTKRDTKELASMLR 259 (367)
T ss_dssp CCSSS-SSEEEEEE------------------------C---CGGGHHHHHHHHHCSTTCCEEEECSSHHHHHHHHHHHH
T ss_pred ecCCC-CceEEEEE------------------------e---ChHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHH
Confidence 22111 11111110 0 01112223333333466799999999999999999887
Q ss_pred HHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEeccccccccccCCccEEEEeCCCCCHhhHHHHhccCCC
Q 002135 547 EILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGR 626 (961)
Q Consensus 547 ~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~aLe~GIDIp~vd~VI~~~~P~s~~sy~QR~GRAGR 626 (961)
+ .+..+..+||++++++|+++++.|++|+.++||||+++++|+|+|++++||++++|.|..+|+||+||+||
T Consensus 260 ~--------~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R 331 (367)
T 1hv8_A 260 D--------IGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGR 331 (367)
T ss_dssp H--------TTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCC
T ss_pred h--------cCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCCCCHHHhhhccccccc
Confidence 6 34578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEeeCCcchhHHHhchHHhhcCCCccc
Q 002135 627 RERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECC 661 (961)
Q Consensus 627 ~g~~g~~i~l~~~~~~d~~~~~~~e~l~~~~ie~~ 661 (961)
.|++|.+++++.. .|....+..++.++..+++.
T Consensus 332 ~g~~g~~~~~~~~--~~~~~~~~i~~~~~~~~~~~ 364 (367)
T 1hv8_A 332 AGKKGKAISIINR--REYKKLRYIERAMKLKIKKL 364 (367)
T ss_dssp SSSCCEEEEEECT--TSHHHHHHHHHHHTCCCCCB
T ss_pred CCCccEEEEEEcH--HHHHHHHHHHHHhCCCCcee
Confidence 9999999888754 45556667777777776654
No 13
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.4e-44 Score=415.96 Aligned_cols=363 Identities=16% Similarity=0.219 Sum_probs=267.5
Q ss_pred cccccCCccccHHHHHHHHhCCCCCCcHHHHHHHHHHhCC--CcEEEEecCCchhHHHHHHHHHHHHhcCC-CCeEEEEc
Q 002135 231 AVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAG--KNVVVATMTSSGKSLCYNLPVLEALSHDL-SSSALYMF 307 (961)
Q Consensus 231 ~~f~~l~~~L~~~l~~~L~~~g~~~l~~~Q~~ai~~il~G--~~vIv~apTGSGKTla~~Lpil~~l~~~~-~~~aLvl~ 307 (961)
.+|.++ +|++.+.++|+++||..|+++|.++++.++++ +++++++|||||||++|++|++..+.... +.++||++
T Consensus 25 ~~f~~~--~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 102 (412)
T 3fht_A 25 KSFEEL--RLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLS 102 (412)
T ss_dssp SCTGGG--TCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEEC
T ss_pred CCHhhC--CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEEC
Confidence 457777 69999999999999999999999999999987 99999999999999999999999887543 45899999
Q ss_pred ccHHHHHHHHHHHHHhHhhCCCCccEEEEcCCCcHHHHHHHhcCCcEEEeChhHHHHhhcCCCchhHHHhhhhhhhhhhc
Q 002135 308 PTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSL 387 (961)
Q Consensus 308 PtraLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~~~r~~l~~~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~~~~ 387 (961)
||++|+.|+.+.++++..... .+.+....|....... ....++|+|+||++|...+..... ..+.++
T Consensus 103 P~~~L~~q~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~ivv~T~~~l~~~~~~~~~---~~~~~~------- 169 (412)
T 3fht_A 103 PTYELALQTGKVIEQMGKFYP-ELKLAYAVRGNKLERG--QKISEQIVIGTPGTVLDWCSKLKF---IDPKKI------- 169 (412)
T ss_dssp SSHHHHHHHHHHHHHHTTTST-TCCEEEECTTCCCCTT--CCCCCSEEEECHHHHHHHHTTSCS---SCGGGC-------
T ss_pred CCHHHHHHHHHHHHHHHhhcc-cceEEEeecCcchhhh--hcCCCCEEEECchHHHHHHHhcCC---cChhhC-------
Confidence 999999999999999876543 3566666665543321 234579999999999766522111 112344
Q ss_pred chhhhhhhhcceeEEEEecchhhhcc--cchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCChH-HHHHHHcccCCeEE
Q 002135 388 VTTEVYLIFLFIRFVVIDEAHAYKGA--FGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPR-EHCMELANLSTLEL 464 (961)
Q Consensus 388 ~~~~~~~~~~~i~~VVIDEaH~~~~~--fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~~-e~~~~L~~~~~~~~ 464 (961)
++||+||||++.+. +...+. .+.+. ...+.|++++|||+++.. .....+... ...
T Consensus 170 ------------~~iViDEah~~~~~~~~~~~~~----~~~~~----~~~~~~~i~~SAT~~~~~~~~~~~~~~~--~~~ 227 (412)
T 3fht_A 170 ------------KVFVLDEADVMIATQGHQDQSI----RIQRM----LPRNCQMLLFSATFEDSVWKFAQKVVPD--PNV 227 (412)
T ss_dssp ------------CEEEEETHHHHHSTTTTHHHHH----HHHHT----SCTTCEEEEEESCCCHHHHHHHHHHSSS--CEE
T ss_pred ------------cEEEEeCHHHHhhcCCcHHHHH----HHHhh----CCCCceEEEEEeecCHHHHHHHHHhcCC--CeE
Confidence 99999999999752 333322 22222 245789999999997654 333333332 223
Q ss_pred EecCCCc---cceeEEEEeCCCccccccccccccccchhhhcccCCCCcHHHHHHHHHHHHHCCCcEEEEecChHHHHHH
Q 002135 465 IQNDGSP---CAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELV 541 (961)
Q Consensus 465 i~~~g~p---~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~k~IVF~~sr~~ae~l 541 (961)
+...... ......+...+ ....+...+..++.. ..+.++||||++++.|+.+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~l~~~~~~--~~~~~~lvf~~~~~~~~~l 282 (412)
T 3fht_A 228 IKLKREEETLDTIKQYYVLCS-----------------------SRDEKFQALCNLYGA--ITIAQAMIFCHTRKTASWL 282 (412)
T ss_dssp ECCCGGGSSCTTEEEEEEECS-----------------------SHHHHHHHHHHHHHH--HSSSEEEEECSSHHHHHHH
T ss_pred EeeccccccccCceEEEEEcC-----------------------ChHHHHHHHHHHHhh--cCCCCEEEEeCCHHHHHHH
Confidence 3222111 11111111100 001122223333322 2457999999999999999
Q ss_pred HHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEeccccccccccCCccEEEEeCCC------CCHh
Q 002135 542 LSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFP------GSIA 615 (961)
Q Consensus 542 ~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~aLe~GIDIp~vd~VI~~~~P------~s~~ 615 (961)
++.|++ .+..+..+||++++++|.++++.|++|+.++||||+++++|||+|++++||++++| .+..
T Consensus 283 ~~~L~~--------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~ 354 (412)
T 3fht_A 283 AAELSK--------EGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE 354 (412)
T ss_dssp HHHHHH--------TTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHH
T ss_pred HHHHHh--------CCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchh
Confidence 998876 34578899999999999999999999999999999999999999999999999999 5789
Q ss_pred hHHHHhccCCCCCCCceEEEEeeCCcchhHHHhchHHhhcCCCcccccC
Q 002135 616 SLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHID 664 (961)
Q Consensus 616 sy~QR~GRAGR~g~~g~~i~l~~~~~~d~~~~~~~e~l~~~~ie~~~~~ 664 (961)
+|+||+||+||.|++|.+++++.. ..+..+++.+++.++..++....+
T Consensus 355 ~~~Qr~GR~gR~g~~g~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~ 402 (412)
T 3fht_A 355 TYLHRIGRTGRFGKRGLAVNMVDS-KHSMNILNRIQEHFNKKIERLDTD 402 (412)
T ss_dssp HHHHHHTTSSCTTCCEEEEEEECS-HHHHHHHHHHHHHHTCCCEEC---
T ss_pred eeecccCcccCCCCCceEEEEEcC-hhhHHHHHHHHHHHCCccccCCCc
Confidence 999999999999999999987743 445677778888888877666543
No 14
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=7.9e-44 Score=406.81 Aligned_cols=370 Identities=18% Similarity=0.247 Sum_probs=269.0
Q ss_pred ccccccCCccccHHHHHHHHhCCCCCCcHHHHHHHHHHhCC--CcEEEEecCCchhHHHHHHHHHHHHhcC-CCCeEEEE
Q 002135 230 KAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAG--KNVVVATMTSSGKSLCYNLPVLEALSHD-LSSSALYM 306 (961)
Q Consensus 230 ~~~f~~l~~~L~~~l~~~L~~~g~~~l~~~Q~~ai~~il~G--~~vIv~apTGSGKTla~~Lpil~~l~~~-~~~~aLvl 306 (961)
..+|.++ +|++.+.++|++.|+..|+++|.++++.+++| +++++++|||||||++|++|++..+... .+.++||+
T Consensus 4 ~~~f~~~--~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil 81 (395)
T 3pey_A 4 AKSFDEL--GLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICL 81 (395)
T ss_dssp CCSSTTS--CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEE
T ss_pred ccCHhhC--CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEE
Confidence 3568888 69999999999999999999999999999998 9999999999999999999999987653 46689999
Q ss_pred cccHHHHHHHHHHHHHhHhhCCCCccEEEEcCCCcHHHHHHHhcCCcEEEeChhHHHHhhcCCCchhHHHhhhhhhhhhh
Q 002135 307 FPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFS 386 (961)
Q Consensus 307 ~PtraLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~~~r~~l~~~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~~~ 386 (961)
+||++|+.|+.+.++++....+ +.+....|+..... ...+++|+|+||++|...+... ...+.++
T Consensus 82 ~P~~~L~~q~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~iiv~T~~~l~~~~~~~----~~~~~~~------ 146 (395)
T 3pey_A 82 APSRELARQTLEVVQEMGKFTK--ITSQLIVPDSFEKN---KQINAQVIVGTPGTVLDLMRRK----LMQLQKI------ 146 (395)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSC--CCEEEESTTSSCTT---SCBCCSEEEECHHHHHHHHHTT----CBCCTTC------
T ss_pred CCCHHHHHHHHHHHHHHhcccC--eeEEEEecCchhhh---ccCCCCEEEEcHHHHHHHHHcC----CcccccC------
Confidence 9999999999999999876544 56666666654322 2346899999999997654211 1113333
Q ss_pred cchhhhhhhhcceeEEEEecchhhhcccchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCChH-HHHHHHcccCCeEEE
Q 002135 387 LVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPR-EHCMELANLSTLELI 465 (961)
Q Consensus 387 ~~~~~~~~~~~~i~~VVIDEaH~~~~~fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~~-e~~~~L~~~~~~~~i 465 (961)
++||+||||++....+ +...+..+.+. ...+.|++++|||+++.. .....+... ...+
T Consensus 147 -------------~~iIiDEah~~~~~~~--~~~~~~~~~~~----~~~~~~~i~~SAT~~~~~~~~~~~~~~~--~~~~ 205 (395)
T 3pey_A 147 -------------KIFVLDEADNMLDQQG--LGDQCIRVKRF----LPKDTQLVLFSATFADAVRQYAKKIVPN--ANTL 205 (395)
T ss_dssp -------------CEEEEETHHHHHHSTT--HHHHHHHHHHT----SCTTCEEEEEESCCCHHHHHHHHHHSCS--CEEE
T ss_pred -------------CEEEEEChhhhcCccc--cHHHHHHHHHh----CCCCcEEEEEEecCCHHHHHHHHHhCCC--CeEE
Confidence 9999999999876322 22223333332 245689999999997653 333344332 2222
Q ss_pred ecCCCc---cceeEEEEeCCCccccccccccccccchhhhcccCCCCcHHHHHHHHHHHHH--CCCcEEEEecChHHHHH
Q 002135 466 QNDGSP---CAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQ--HGLRCIAFCRSRKLCEL 540 (961)
Q Consensus 466 ~~~g~p---~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~--~g~k~IVF~~sr~~ae~ 540 (961)
...... ......+.. ..........+..+.. .+.++||||++++.|+.
T Consensus 206 ~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~ 258 (395)
T 3pey_A 206 ELQTNEVNVDAIKQLYMD---------------------------CKNEADKFDVLTELYGLMTIGSSIIFVATKKTANV 258 (395)
T ss_dssp CCCGGGCSCTTEEEEEEE---------------------------CSSHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHH
T ss_pred EccccccccccccEEEEE---------------------------cCchHHHHHHHHHHHHhccCCCEEEEeCCHHHHHH
Confidence 211111 111111100 0011122223333333 35799999999999999
Q ss_pred HHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEeccccccccccCCccEEEEeCCCC------CH
Q 002135 541 VLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPG------SI 614 (961)
Q Consensus 541 l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~aLe~GIDIp~vd~VI~~~~P~------s~ 614 (961)
+++.|++ .+..+..+||++++++|.++++.|++|+.++||||+++++|||+|++++||++++|. |.
T Consensus 259 l~~~l~~--------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~ 330 (395)
T 3pey_A 259 LYGKLKS--------EGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADP 330 (395)
T ss_dssp HHHHHHH--------TTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCH
T ss_pred HHHHHHh--------cCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCH
Confidence 9998876 345788999999999999999999999999999999999999999999999999999 99
Q ss_pred hhHHHHhccCCCCCCCceEEEEeeCCcchhHHHhchHHhhcCCCcccccCCCCHHHHHHH
Q 002135 615 ASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQH 674 (961)
Q Consensus 615 ~sy~QR~GRAGR~g~~g~~i~l~~~~~~d~~~~~~~e~l~~~~ie~~~~~~~n~~vl~~~ 674 (961)
.+|+||+||+||.|++|.+++++.. +.+..+.+..++.++ ..+...++..+.+.+..-
T Consensus 331 ~~~~Qr~GR~gR~g~~g~~~~~~~~-~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~ 388 (395)
T 3pey_A 331 ATYIHRIGRTGRFGRKGVAISFVHD-KNSFNILSAIQKYFG-DIEMTRVPTDDWDEVEKI 388 (395)
T ss_dssp HHHHHHHTTSSCTTCCEEEEEEECS-HHHHHHHHHHHHHTT-SCCCEECCSSCHHHHHHH
T ss_pred HHhhHhccccccCCCCceEEEEEec-hHHHHHHHHHHHHhC-CceeecCChHHHHHHHHH
Confidence 9999999999999999999987743 344555566666665 123333444445444433
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=1.1e-44 Score=435.51 Aligned_cols=346 Identities=22% Similarity=0.268 Sum_probs=253.5
Q ss_pred CcccccccCCccccHHHHHHHHh-CCCCCCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEE
Q 002135 228 ARKAVLVEIPDALLDNTKSALKS-TGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYM 306 (961)
Q Consensus 228 ~~~~~f~~l~~~L~~~l~~~L~~-~g~~~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl 306 (961)
.....|.....+|++.+.+.|++ +||..|+|+|.++|+.+++|+|+++++|||+|||+||++|++.. .+++|||
T Consensus 16 ~~~~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~-----~g~~lVi 90 (591)
T 2v1x_A 16 SSPAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS-----DGFTLVI 90 (591)
T ss_dssp CCGGGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS-----SSEEEEE
T ss_pred cchhccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc-----CCcEEEE
Confidence 33445554434689999999987 79999999999999999999999999999999999999999752 5689999
Q ss_pred cccHHHHHHHHHHHHHhHhhCCCCccEEEEcCCCcHHHHHHH-------hcCCcEEEeChhHHHHhhcCCCchhHHHhhh
Q 002135 307 FPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWL-------RDNARLLITNPDMLHMSILPYHGQFSRILSN 379 (961)
Q Consensus 307 ~PtraLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~~~r~~l-------~~~~~IlItTPe~L~~~lL~~~~~~~~~L~~ 379 (961)
+|+++|++||.+.+.++ ++.+..+.|+....+.... ...++|+++||++|... ..+...+.+
T Consensus 91 sP~~~L~~q~~~~l~~~------gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~-----~~~~~~l~~ 159 (591)
T 2v1x_A 91 CPLISLMEDQLMVLKQL------GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKS-----KMFMSRLEK 159 (591)
T ss_dssp CSCHHHHHHHHHHHHHH------TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSC-----HHHHHHHHH
T ss_pred eCHHHHHHHHHHHHHhc------CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhcc-----HHHHHHHHh
Confidence 99999999999999886 3678888888876654432 34589999999998531 011111111
Q ss_pred hhhhhhhcchhhhhhhhcceeEEEEecchhhhcccchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCChH-HHHHHHcc
Q 002135 380 LRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPR-EHCMELAN 458 (961)
Q Consensus 380 l~~~~~~~~~~~~~~~~~~i~~VVIDEaH~~~~~fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~~-e~~~~L~~ 458 (961)
. ..+..+++|||||||+++. +|.++...++.+..+... .++.++|++|||+++.. +.+...++
T Consensus 160 ~-------------~~~~~i~~iViDEAH~is~-~g~dfr~~~~~l~~l~~~--~~~~~ii~lSAT~~~~v~~~i~~~l~ 223 (591)
T 2v1x_A 160 A-------------YEARRFTRIAVDEVHCCSQ-WGHDFRPDYKALGILKRQ--FPNASLIGLTATATNHVLTDAQKILC 223 (591)
T ss_dssp H-------------HHTTCEEEEEEETGGGGST-TCTTCCGGGGGGGHHHHH--CTTSEEEEEESSCCHHHHHHHHHHTT
T ss_pred h-------------hhccCCcEEEEECcccccc-cccccHHHHHHHHHHHHh--CCCCcEEEEecCCCHHHHHHHHHHhC
Confidence 1 1223459999999999986 333222222222222211 23579999999997543 44445555
Q ss_pred cCCeEEEecCCCccceeEEEEeCCCccccccccccccccchhhhcccCCCCcHHHHHHHHHHHHH--CCCcEEEEecChH
Q 002135 459 LSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQ--HGLRCIAFCRSRK 536 (961)
Q Consensus 459 ~~~~~~i~~~g~p~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~--~g~k~IVF~~sr~ 536 (961)
......+............+... .......+..++..+.. .+.++||||+|++
T Consensus 224 ~~~~~~~~~~~~r~nl~~~v~~~-------------------------~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~ 278 (591)
T 2v1x_A 224 IEKCFTFTASFNRPNLYYEVRQK-------------------------PSNTEDFIEDIVKLINGRYKGQSGIIYCFSQK 278 (591)
T ss_dssp CCSCEEEECCCCCTTEEEEEEEC-------------------------CSSHHHHHHHHHHHHTTTTTTCEEEEECSSHH
T ss_pred CCCcEEEecCCCCcccEEEEEeC-------------------------CCcHHHHHHHHHHHHHHhccCCCeEEEeCcHH
Confidence 44444433322211111111100 01111222223332222 4679999999999
Q ss_pred HHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEeccccccccccCCccEEEEeCCCCCHhh
Q 002135 537 LCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIAS 616 (961)
Q Consensus 537 ~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~aLe~GIDIp~vd~VI~~~~P~s~~s 616 (961)
.|+.++..|+. .+..+..|||++++++|.+++++|++|+++|||||+++++|||+|+|++||++++|.|+++
T Consensus 279 ~~e~la~~L~~--------~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~ 350 (591)
T 2v1x_A 279 DSEQVTVSLQN--------LGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMEN 350 (591)
T ss_dssp HHHHHHHHHHH--------TTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHH
T ss_pred HHHHHHHHHHH--------CCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCCHHH
Confidence 99999998876 3557899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCCCCceEEEEee
Q 002135 617 LWQQAGRSGRRERPSLAVYVAF 638 (961)
Q Consensus 617 y~QR~GRAGR~g~~g~~i~l~~ 638 (961)
|+||+|||||.|++|.+++++.
T Consensus 351 y~Qr~GRaGR~G~~g~~i~l~~ 372 (591)
T 2v1x_A 351 YYQESGRAGRDDMKADCILYYG 372 (591)
T ss_dssp HHHHHTTSCTTSSCEEEEEEEC
T ss_pred HHHHhccCCcCCCCceEEEEEC
Confidence 9999999999999999998764
No 16
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=3.3e-44 Score=426.72 Aligned_cols=334 Identities=24% Similarity=0.326 Sum_probs=251.6
Q ss_pred cccccCCccccHHHHHHHHh-CCCCCCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEccc
Q 002135 231 AVLVEIPDALLDNTKSALKS-TGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPT 309 (961)
Q Consensus 231 ~~f~~l~~~L~~~l~~~L~~-~g~~~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~Pt 309 (961)
..|+++ +|++.+.+.|++ +||..|+++|.++|+.+++|+|+++++|||||||+||++|++.. .+++|||+|+
T Consensus 2 ~~fe~l--~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-----~g~~lvi~P~ 74 (523)
T 1oyw_A 2 AQAEVL--NLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL-----NGLTVVVSPL 74 (523)
T ss_dssp CCCCCS--SHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS-----SSEEEEECSC
T ss_pred CChhhC--CCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh-----CCCEEEECCh
Confidence 457777 699999999987 99999999999999999999999999999999999999999853 4689999999
Q ss_pred HHHHHHHHHHHHHhHhhCCCCccEEEEcCCCcHHHHHH----H-hcCCcEEEeChhHHHHhhcCCCchhHHHhhhhhhhh
Q 002135 310 KALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMW----L-RDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384 (961)
Q Consensus 310 raLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~~~r~~----l-~~~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~ 384 (961)
++|++||.+.+.++ ++.+..++|+....+... + ...++|+++||++|... .+...+..
T Consensus 75 ~aL~~q~~~~l~~~------gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~------~~~~~l~~----- 137 (523)
T 1oyw_A 75 ISLMKDQVDQLQAN------GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLD------NFLEHLAH----- 137 (523)
T ss_dssp HHHHHHHHHHHHHT------TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTST------THHHHHTT-----
T ss_pred HHHHHHHHHHHHHc------CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCh------HHHHHHhh-----
Confidence 99999999999874 366778888876554322 2 33589999999998521 22222221
Q ss_pred hhcchhhhhhhhcceeEEEEecchhhhcccchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCChH-HHHHHHcccCCeE
Q 002135 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPR-EHCMELANLSTLE 463 (961)
Q Consensus 385 ~~~~~~~~~~~~~~i~~VVIDEaH~~~~~fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~~-e~~~~L~~~~~~~ 463 (961)
.++++|||||||+++. +|.++...+..+..+.... ++.+++++|||+.+.. +.+....+..+..
T Consensus 138 ------------~~~~~vViDEaH~i~~-~g~~fr~~~~~l~~l~~~~--~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~ 202 (523)
T 1oyw_A 138 ------------WNPVLLAVDEAHCISQ-WGHDFRPEYAALGQLRQRF--PTLPFMALTATADDTTRQDIVRLLGLNDPL 202 (523)
T ss_dssp ------------SCEEEEEESSGGGGCT-TSSCCCHHHHGGGGHHHHC--TTSCEEEEESCCCHHHHHHHHHHHTCCSCE
T ss_pred ------------CCCCEEEEeCccccCc-CCCccHHHHHHHHHHHHhC--CCCCEEEEeCCCCHHHHHHHHHHhCCCCCe
Confidence 2349999999999975 5544433334443333322 3578999999997653 2233333433333
Q ss_pred EEecCCCccceeEEEEeCCCccccccccccccccchhhhcccCCCCcHHHHHHHHHHHHHCCCcEEEEecChHHHHHHHH
Q 002135 464 LIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLS 543 (961)
Q Consensus 464 ~i~~~g~p~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~k~IVF~~sr~~ae~l~~ 543 (961)
++............+ .....+...+..++... .+.++||||+|++.++.+++
T Consensus 203 ~~~~~~~r~~l~~~v--------------------------~~~~~~~~~l~~~l~~~--~~~~~IVf~~sr~~~e~l~~ 254 (523)
T 1oyw_A 203 IQISSFDRPNIRYML--------------------------MEKFKPLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAA 254 (523)
T ss_dssp EEECCCCCTTEEEEE--------------------------EECSSHHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHH
T ss_pred EEeCCCCCCceEEEE--------------------------EeCCCHHHHHHHHHHhc--CCCcEEEEeCCHHHHHHHHH
Confidence 322211111111110 01122333344443321 56799999999999999999
Q ss_pred HHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEeccccccccccCCccEEEEeCCCCCHhhHHHHhcc
Q 002135 544 YTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGR 623 (961)
Q Consensus 544 ~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~aLe~GIDIp~vd~VI~~~~P~s~~sy~QR~GR 623 (961)
.|++ .+..+..|||++++++|++++++|++|+++|||||+++++|||+|++++||++++|.|+++|+||+||
T Consensus 255 ~L~~--------~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GR 326 (523)
T 1oyw_A 255 RLQS--------KGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGR 326 (523)
T ss_dssp HHHH--------TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTT
T ss_pred HHHH--------CCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhcc
Confidence 8876 34578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceEEEEeeC
Q 002135 624 SGRRERPSLAVYVAFE 639 (961)
Q Consensus 624 AGR~g~~g~~i~l~~~ 639 (961)
|||.|.+|.+++++..
T Consensus 327 aGR~g~~~~~~l~~~~ 342 (523)
T 1oyw_A 327 AGRDGLPAEAMLFYDP 342 (523)
T ss_dssp SCTTSSCEEEEEEECH
T ss_pred ccCCCCCceEEEEeCH
Confidence 9999999999987743
No 17
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=3e-45 Score=419.09 Aligned_cols=367 Identities=18% Similarity=0.266 Sum_probs=154.8
Q ss_pred cCCcccccccCCccccHHHHHHHHhCCCCCCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcC-CCCeEE
Q 002135 226 ISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHD-LSSSAL 304 (961)
Q Consensus 226 ~p~~~~~f~~l~~~L~~~l~~~L~~~g~~~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~-~~~~aL 304 (961)
++.....|.++ +|++.+.+.|..+|+.+|+++|.++++.+++|+++++++|||||||++|++|++..+... .+.++|
T Consensus 16 ~~~~~~~f~~~--~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~l 93 (394)
T 1fuu_A 16 YDKVVYKFDDM--ELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQAL 93 (394)
T ss_dssp SCCCCCSSGGG--CCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEE
T ss_pred cccccCChhhc--CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEE
Confidence 44455678888 699999999999999999999999999999999999999999999999999999988654 356899
Q ss_pred EEcccHHHHHHHHHHHHHhHhhCCCCccEEEEcCCCcHHHHHHHhcCCcEEEeChhHHHHhhcCCCchhHHHhhhhhhhh
Q 002135 305 YMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384 (961)
Q Consensus 305 vl~PtraLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~~~r~~l~~~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~ 384 (961)
|++|+++|+.|+.+.+.++....+ +.+..+.|+....+......+++|+|+||++|...+... ...+.++
T Consensus 94 il~P~~~L~~q~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~----~~~~~~~---- 163 (394)
T 1fuu_A 94 MLAPTRELALQIQKVVMALAFHMD--IKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRR----RFRTDKI---- 163 (394)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSC--CCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTT----SSCCTTC----
T ss_pred EEcCCHHHHHHHHHHHHHHhccCC--eeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhC----CcchhhC----
Confidence 999999999999999999876544 678888888776554444447899999999987654211 1112333
Q ss_pred hhcchhhhhhhhcceeEEEEecchhhhc-ccchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCChH-HHHHHHcccCCe
Q 002135 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKG-AFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPR-EHCMELANLSTL 462 (961)
Q Consensus 385 ~~~~~~~~~~~~~~i~~VVIDEaH~~~~-~fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~~-e~~~~L~~~~~~ 462 (961)
++||+||||++.+ .+...+..++..+ ....|++++|||+++.. +....+.... .
T Consensus 164 ---------------~~vIiDEah~~~~~~~~~~~~~~~~~~--------~~~~~~i~~SAT~~~~~~~~~~~~~~~~-~ 219 (394)
T 1fuu_A 164 ---------------KMFILDEADEMLSSGFKEQIYQIFTLL--------PPTTQVVLLSATMPNDVLEVTTKFMRNP-V 219 (394)
T ss_dssp ---------------CEEEEETHHHHHHTTCHHHHHHHHHHS--------CTTCEEEEECSSCCHHHHHHHHHHCCSC-E
T ss_pred ---------------cEEEEEChHHhhCCCcHHHHHHHHHhC--------CCCceEEEEEEecCHHHHHHHHHhcCCC-e
Confidence 9999999999865 3555444433222 35679999999997643 3333333321 2
Q ss_pred EEEecCCCcc--ceeEEEEeCCCccccccccccccccchhhhcccCCCCcHHHHHHHHHHHHHCCCcEEEEecChHHHHH
Q 002135 463 ELIQNDGSPC--AQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCEL 540 (961)
Q Consensus 463 ~~i~~~g~p~--~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~k~IVF~~sr~~ae~ 540 (961)
.+........ .....+. .......+...+..++... .+.++||||++++.++.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~l~~~~~~~--~~~~~lVf~~~~~~~~~ 274 (394)
T 1fuu_A 220 RILVKKDELTLEGIKQFYV-----------------------NVEEEEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEE 274 (394)
T ss_dssp EEEECC--------------------------------------------------------------------------
T ss_pred EEEecCccccCCCceEEEE-----------------------EcCchhhHHHHHHHHHhcC--CCCcEEEEECCHHHHHH
Confidence 2111111000 0000000 0000111222222333222 34689999999999999
Q ss_pred HHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEeccccccccccCCccEEEEeCCCCCHhhHHHH
Q 002135 541 VLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQ 620 (961)
Q Consensus 541 l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~aLe~GIDIp~vd~VI~~~~P~s~~sy~QR 620 (961)
+++.|++ .+..+..+||++++++|.++++.|++|+.++||||+++++|+|+|++++||++++|.|..+|+||
T Consensus 275 l~~~L~~--------~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr 346 (394)
T 1fuu_A 275 LTTKLRN--------DKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHR 346 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHH--------cCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHH
Confidence 9988865 24468899999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCceEEEEeeCCcchhHHHhchHHhhcCCCccccc
Q 002135 621 AGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHI 663 (961)
Q Consensus 621 ~GRAGR~g~~g~~i~l~~~~~~d~~~~~~~e~l~~~~ie~~~~ 663 (961)
+||+||.|++|.+++++... |...++..+++++.+++....
T Consensus 347 ~GR~~R~g~~g~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~ 387 (394)
T 1fuu_A 347 IGRGGRFGRKGVAINFVTNE--DVGAMRELEKFYSTQIEELPS 387 (394)
T ss_dssp -------------------------------------------
T ss_pred cCcccCCCCCceEEEEEchh--HHHHHHHHHHHhCCcccccCc
Confidence 99999999999998877544 445566677777776665544
No 18
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.9e-43 Score=392.59 Aligned_cols=331 Identities=20% Similarity=0.233 Sum_probs=245.9
Q ss_pred ccHHHHHHHHhCCCCCCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHHHHHHHHHH
Q 002135 240 LLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRA 319 (961)
Q Consensus 240 L~~~l~~~L~~~g~~~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~PtraLa~qq~~~ 319 (961)
|++.+.++|+++|+..|+++|.++++.+++|+++++++|||||||++|++|++.. +.++||++|+++|+.|+.++
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~-----~~~~liv~P~~~L~~q~~~~ 75 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL-----GMKSLVVTPTRELTRQVASH 75 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-----TCCEEEECSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh-----cCCEEEEeCCHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999874 67899999999999999999
Q ss_pred HHHhHhhCCCCccEEEEcCCCcHHHHHHHhcCCcEEEeChhHHHHhhcCCCchhHHHhhhhhhhhhhcchhhhhhhhcce
Q 002135 320 LLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399 (961)
Q Consensus 320 l~~l~~~~~~~i~v~~~~Gd~~~~~r~~l~~~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~i 399 (961)
++++....+ +.+..+.|+...........+++|+|+||++|...+... ...+.++
T Consensus 76 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~----~~~~~~~------------------- 130 (337)
T 2z0m_A 76 IRDIGRYMD--TKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSKG----VIDLSSF------------------- 130 (337)
T ss_dssp HHHHTTTSC--CCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTT----SCCGGGC-------------------
T ss_pred HHHHhhhcC--CcEEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHcC----CcchhhC-------------------
Confidence 999876554 667778887766554444456999999999987654211 0112333
Q ss_pred eEEEEecchhhhc-ccchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCChH-HHHHHHcccCCeEEEecCCCccceeEE
Q 002135 400 RFVVIDEAHAYKG-AFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPR-EHCMELANLSTLELIQNDGSPCAQKLF 477 (961)
Q Consensus 400 ~~VVIDEaH~~~~-~fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~~-e~~~~L~~~~~~~~i~~~g~p~~~~~~ 477 (961)
++||+||||++.+ ++...+..++..+ ....+++++|||+++.. +.+..+... ...+............
T Consensus 131 ~~iViDEah~~~~~~~~~~~~~~~~~~--------~~~~~~~~~SAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 200 (337)
T 2z0m_A 131 EIVIIDEADLMFEMGFIDDIKIILAQT--------SNRKITGLFSATIPEEIRKVVKDFITN--YEEIEACIGLANVEHK 200 (337)
T ss_dssp SEEEEESHHHHHHTTCHHHHHHHHHHC--------TTCSEEEEEESCCCHHHHHHHHHHSCS--CEEEECSGGGGGEEEE
T ss_pred cEEEEEChHHhhccccHHHHHHHHhhC--------CcccEEEEEeCcCCHHHHHHHHHhcCC--ceeeecccccCCceEE
Confidence 9999999999976 3554444433221 34678889999997543 233333322 2222222111111111
Q ss_pred EEeCCCccccccccccccccchhhhcccCCCCcHHHHHHHHHHHHHCCCcEEEEecChHHHHHHHHHHHHHHHhhCCccc
Q 002135 478 VLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLV 557 (961)
Q Consensus 478 ~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~ 557 (961)
.... ..........+. ...+.++||||++++.++.+++.++
T Consensus 201 ~~~~--------------------------~~~~~~~~~~~~--~~~~~~~lvf~~~~~~~~~l~~~l~----------- 241 (337)
T 2z0m_A 201 FVHV--------------------------KDDWRSKVQALR--ENKDKGVIVFVRTRNRVAKLVRLFD----------- 241 (337)
T ss_dssp EEEC--------------------------SSSSHHHHHHHH--TCCCSSEEEECSCHHHHHHHHTTCT-----------
T ss_pred EEEe--------------------------ChHHHHHHHHHH--hCCCCcEEEEEcCHHHHHHHHHHhh-----------
Confidence 1110 011111112221 1346799999999999998876543
Q ss_pred ccEEEEcCCCCHHHHHHHHHHHhCCCceEEEeccccccccccCCccEEEEeCCCCCHhhHHHHhccCCCCCCCceEEEEe
Q 002135 558 DSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVA 637 (961)
Q Consensus 558 ~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~aLe~GIDIp~vd~VI~~~~P~s~~sy~QR~GRAGR~g~~g~~i~l~ 637 (961)
.+..+||+++..+|.+++++|++|+.++||||+++++|+|+|++++||++++|.|..+|+||+||+||.|++|.+++++
T Consensus 242 -~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~ 320 (337)
T 2z0m_A 242 -NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFI 320 (337)
T ss_dssp -TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEE
T ss_pred -hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEE
Confidence 4788999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred eCCcchhHHHhchHHh
Q 002135 638 FEGPLDQYFMKYPEKL 653 (961)
Q Consensus 638 ~~~~~d~~~~~~~e~l 653 (961)
. .+..+.+..++.
T Consensus 321 ~---~~~~~~~~i~~~ 333 (337)
T 2z0m_A 321 L---NEYWLEKEVKKV 333 (337)
T ss_dssp S---SCHHHHHHHC--
T ss_pred e---CcHHHHHHHHHH
Confidence 6 344444444433
No 19
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.3e-44 Score=426.49 Aligned_cols=362 Identities=16% Similarity=0.217 Sum_probs=144.7
Q ss_pred ccccCCccccHHHHHHHHhCCCCCCcHHHHHHHHHHhCC--CcEEEEecCCchhHHHHHHHHHHHHhcCC-CCeEEEEcc
Q 002135 232 VLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAG--KNVVVATMTSSGKSLCYNLPVLEALSHDL-SSSALYMFP 308 (961)
Q Consensus 232 ~f~~l~~~L~~~l~~~L~~~g~~~l~~~Q~~ai~~il~G--~~vIv~apTGSGKTla~~Lpil~~l~~~~-~~~aLvl~P 308 (961)
+|.++ +|++.+.+.|+++||..|+++|.+|++.++.| ++++++||||||||++|++|++..+.... ++++|||+|
T Consensus 93 ~f~~~--~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~P 170 (479)
T 3fmp_B 93 SFEEL--RLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSP 170 (479)
T ss_dssp CSGGG--TCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECS
T ss_pred CHHHc--CCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeC
Confidence 56666 69999999999999999999999999999987 89999999999999999999998886543 458999999
Q ss_pred cHHHHHHHHHHHHHhHhhCCCCccEEEEcCCCcHHHHHHHhcCCcEEEeChhHHHHhhcCCCchhHHHhhhhhhhhhhcc
Q 002135 309 TKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLV 388 (961)
Q Consensus 309 traLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~~~r~~l~~~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~~~~~ 388 (961)
|++|+.|+.+.+.++..... .+.+....|....... ....++|+|+||++|.+.+..... ..+.++
T Consensus 171 t~~La~Q~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~Ivv~Tp~~l~~~l~~~~~---~~~~~~-------- 236 (479)
T 3fmp_B 171 TYELALQTGKVIEQMGKFYP-ELKLAYAVRGNKLERG--QKISEQIVIGTPGTVLDWCSKLKF---IDPKKI-------- 236 (479)
T ss_dssp SHHHHHHHHHHHHHHHTTST-TCCEEEESTTCCCCTT--CCCCCSEEEECHHHHHHHHTTSCC---CCGGGC--------
T ss_pred hHHHHHHHHHHHHHHHhhCC-CceEEEEeCCcccccc--ccCCCCEEEECchHHHHHHHhcCC---cCcccC--------
Confidence 99999999999998876543 3556666665433221 234579999999999776522110 112444
Q ss_pred hhhhhhhhcceeEEEEecchhhhcccchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCChHH-HHHHHcccCCeEEEec
Q 002135 389 TTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPRE-HCMELANLSTLELIQN 467 (961)
Q Consensus 389 ~~~~~~~~~~i~~VVIDEaH~~~~~fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~~e-~~~~L~~~~~~~~i~~ 467 (961)
++|||||+|++.+..+.. ..+..+.+. .....|+|++|||+++... .+..+.. ....+..
T Consensus 237 -----------~~iViDEah~~~~~~~~~--~~~~~i~~~----~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~i~~ 297 (479)
T 3fmp_B 237 -----------KVFVLDEADVMIATQGHQ--DQSIRIQRM----LPRNCQMLLFSATFEDSVWKFAQKVVP--DPNVIKL 297 (479)
T ss_dssp -----------CEEEECCHHHHHTSTTHH--HHHHHHHTT----SCTTSEEEEEESCCCHHHHHHHHHHSS--SEEEEEE
T ss_pred -----------CEEEEECHHHHhhcCCcH--HHHHHHHhh----CCccceEEEEeCCCCHHHHHHHHHHcC--CCeEEec
Confidence 999999999997632211 111222222 2456899999999986543 3333332 2333332
Q ss_pred CCCccc---eeEEEEeCCCccccccccccccccchhhhcccCCCCcHHHHHHHHHHHHHCCCcEEEEecChHHHHHHHHH
Q 002135 468 DGSPCA---QKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSY 544 (961)
Q Consensus 468 ~g~p~~---~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~k~IVF~~sr~~ae~l~~~ 544 (961)
...... ....++ .......+...+..++... .+.++||||++++.|+.++..
T Consensus 298 ~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~l~~~~~~~--~~~~~lvF~~s~~~~~~l~~~ 352 (479)
T 3fmp_B 298 KREEETLDTIKQYYV-----------------------LCSSRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAE 352 (479)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred cccccCcCCceEEEE-----------------------EeCCHHHHHHHHHHHHhhc--cCCceEEEeCcHHHHHHHHHH
Confidence 221100 000000 0011112222222222221 346899999999999999988
Q ss_pred HHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEeccccccccccCCccEEEEeCCC------CCHhhHH
Q 002135 545 TREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFP------GSIASLW 618 (961)
Q Consensus 545 L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~aLe~GIDIp~vd~VI~~~~P------~s~~sy~ 618 (961)
|+. .+..+..+||++++.+|..+++.|++|+.+|||||+++++|||+|++++||++|+| .+..+|+
T Consensus 353 L~~--------~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~ 424 (479)
T 3fmp_B 353 LSK--------EGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYL 424 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHh--------CCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHH
Confidence 865 34568899999999999999999999999999999999999999999999999999 4778999
Q ss_pred HHhccCCCCCCCceEEEEeeCCcchhHHHhchHHhhcCCCcccc
Q 002135 619 QQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCH 662 (961)
Q Consensus 619 QR~GRAGR~g~~g~~i~l~~~~~~d~~~~~~~e~l~~~~ie~~~ 662 (961)
||+|||||.|++|.+++++... .+..+++.+++.++..++.+.
T Consensus 425 Qr~GRagR~g~~G~~i~~~~~~-~~~~~~~~i~~~~~~~~~~l~ 467 (479)
T 3fmp_B 425 HRIGRTGRFGKRGLAVNMVDSK-HSMNILNRIQEHFNKKIERLD 467 (479)
T ss_dssp --------------------------------------------
T ss_pred HHhcccccCCCCceEEEEEcCc-chHHHHHHHHHHhCCCceECC
Confidence 9999999999999999877543 345666667777776665443
No 20
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.7e-42 Score=455.55 Aligned_cols=359 Identities=18% Similarity=0.203 Sum_probs=275.6
Q ss_pred ccHHHHHHHHhCCCCCCcHHHHHHHHHHhC-CCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHHHHHHHHH
Q 002135 240 LLDNTKSALKSTGISKLYSHQAESIMASLA-GKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLR 318 (961)
Q Consensus 240 L~~~l~~~L~~~g~~~l~~~Q~~ai~~il~-G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~PtraLa~qq~~ 318 (961)
|.+...+++...+|..|+|+|.++++.++. ++|++++||||||||++|.+|++..+.++++.++||++|+|||++|+++
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~ 990 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYM 990 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHH
Confidence 555666777777899999999999999975 5789999999999999999999999998888899999999999999999
Q ss_pred HHHHhHhhCCCCccEEEEcCCCcHHHHHHHhcCCcEEEeChhHHHHhhcCCCchhHHHhhhhhhhhhhcchhhhhhhhcc
Q 002135 319 ALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLF 398 (961)
Q Consensus 319 ~l~~l~~~~~~~i~v~~~~Gd~~~~~r~~l~~~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~ 398 (961)
.|.+.+.. ..+++|+.++|++..+.+ ...+++|+|+|||++..++ ++......++++
T Consensus 991 ~~~~~f~~-~~g~~V~~ltGd~~~~~~--~~~~~~IiV~TPEkld~ll--r~~~~~~~l~~v------------------ 1047 (1724)
T 4f92_B 991 DWYEKFQD-RLNKKVVLLTGETSTDLK--LLGKGNIIISTPEKWDILS--RRWKQRKNVQNI------------------ 1047 (1724)
T ss_dssp HHHHHHTT-TSCCCEEECCSCHHHHHH--HHHHCSEEEECHHHHHHHH--TTTTTCHHHHSC------------------
T ss_pred HHHHHhch-hcCCEEEEEECCCCcchh--hcCCCCEEEECHHHHHHHH--hCccccccccee------------------
Confidence 99775432 124789999998765443 3456899999999986543 222333456666
Q ss_pred eeEEEEecchhhhcccchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCChHHHHHHHccc-CCeEEEecCCCccceeEE
Q 002135 399 IRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL-STLELIQNDGSPCAQKLF 477 (961)
Q Consensus 399 i~~VVIDEaH~~~~~fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~~e~~~~L~~~-~~~~~i~~~g~p~~~~~~ 477 (961)
++||+||+|.+.+.+|..+..++.+++.+..+. ..+.|+|++|||++|+.+.+.||... .....+..+.+|.+...+
T Consensus 1048 -~lvViDE~H~l~d~rg~~le~il~rl~~i~~~~-~~~~riI~lSATl~N~~dla~WL~~~~~~~~~~~~~~RPvpL~~~ 1125 (1724)
T 4f92_B 1048 -NLFVVDEVHLIGGENGPVLEVICSRMRYISSQI-ERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELH 1125 (1724)
T ss_dssp -SEEEECCGGGGGSTTHHHHHHHHHHHHHHHHTT-SSCCEEEEEESCBTTHHHHHHHHTCCSTTEEECCGGGCSSCEEEE
T ss_pred -eEEEeechhhcCCCCCccHHHHHHHHHHHHhhc-CCCceEEEEeCCCCCHHHHHHHhCCCCCCeEEeCCCCCCCCeEEE
Confidence 999999999998789999999999999887653 55789999999999999999998532 234556667777766554
Q ss_pred EEeCCCccccccccccccccchhhhcccCCCCcHHHHHHHHHHHHHCCCcEEEEecChHHHHHHHHHHHHHHHhhC----
Q 002135 478 VLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETA---- 553 (961)
Q Consensus 478 ~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~k~IVF~~sr~~ae~l~~~L~~~l~~~~---- 553 (961)
+...+.... .. .. ......+...+.. ...+.++||||+||+.|+.++..+...+....
T Consensus 1126 i~~~~~~~~-------------~~-~~---~~~~~~~~~~i~~-~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~ 1187 (1724)
T 4f92_B 1126 IQGFNISHT-------------QT-RL---LSMAKPVYHAITK-HSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQR 1187 (1724)
T ss_dssp EEEECCCSH-------------HH-HH---HTTHHHHHHHHHH-HCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred EEeccCCCc-------------hh-hh---hhhcchHHHHHHH-hcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhh
Confidence 432221110 00 00 0111112222222 23567999999999999999887755432211
Q ss_pred ----------------------CcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEeccccccccccCCccEEEE----
Q 002135 554 ----------------------PHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLH---- 607 (961)
Q Consensus 554 ----------------------~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~aLe~GIDIp~vd~VI~---- 607 (961)
..+..+|++|||||++++|+.+++.|++|.++|||||+++++|||+|...+||.
T Consensus 1188 ~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~ 1267 (1724)
T 4f92_B 1188 FLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQY 1267 (1724)
T ss_dssp TBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEE
T ss_pred hhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCcc
Confidence 012347999999999999999999999999999999999999999999999983
Q ss_pred ------eCCCCCHhhHHHHhccCCCCCC--CceEEEEeeCCc
Q 002135 608 ------LGFPGSIASLWQQAGRSGRRER--PSLAVYVAFEGP 641 (961)
Q Consensus 608 ------~~~P~s~~sy~QR~GRAGR~g~--~g~~i~l~~~~~ 641 (961)
...|.++.+|+||+|||||.|. .|.+++++....
T Consensus 1268 ~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~ 1309 (1724)
T 4f92_B 1268 YNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSK 1309 (1724)
T ss_dssp EETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGG
T ss_pred ccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecchH
Confidence 2346799999999999999987 577887775543
No 21
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=3.3e-42 Score=452.96 Aligned_cols=347 Identities=17% Similarity=0.206 Sum_probs=265.6
Q ss_pred CCCCCcHHHHHHHHHHh-CCCcEEEEecCCchhHHHHHHHHHHHHhcC---------CCCeEEEEcccHHHHHHHHHHHH
Q 002135 252 GISKLYSHQAESIMASL-AGKNVVVATMTSSGKSLCYNLPVLEALSHD---------LSSSALYMFPTKALAQDQLRALL 321 (961)
Q Consensus 252 g~~~l~~~Q~~ai~~il-~G~~vIv~apTGSGKTla~~Lpil~~l~~~---------~~~~aLvl~PtraLa~qq~~~l~ 321 (961)
||+.|+++|.++++.++ +++|++++||||||||++|.+|+++.+.+. .+.++|||+|+|||++|+++.|.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 89999999999999877 578999999999999999999999998752 35689999999999999999999
Q ss_pred HhHhhCCCCccEEEEcCCCcHHHHHHHhcCCcEEEeChhHHHHhhcCCCchhHHHhhhhhhhhhhcchhhhhhhhcceeE
Q 002135 322 AMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRF 401 (961)
Q Consensus 322 ~l~~~~~~~i~v~~~~Gd~~~~~r~~l~~~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~i~~ 401 (961)
+.+..++ ++|+.++||+....+ ....++|+|||||++..+ + ++......++++ ++
T Consensus 156 ~~~~~~g--i~V~~~tGd~~~~~~--~~~~~~IlVtTpEkld~l-l-r~~~~~~~l~~v-------------------~~ 210 (1724)
T 4f92_B 156 KRLATYG--ITVAELTGDHQLCKE--EISATQIIVCTPEKWDII-T-RKGGERTYTQLV-------------------RL 210 (1724)
T ss_dssp HHHTTTT--CCEEECCSSCSSCCT--TGGGCSEEEECHHHHHHH-T-TSSTTHHHHTTE-------------------EE
T ss_pred HHHhhCC--CEEEEEECCCCCCcc--ccCCCCEEEECHHHHHHH-H-cCCccchhhcCc-------------------CE
Confidence 8877654 789999999865432 235689999999998543 3 223334556666 99
Q ss_pred EEEecchhhhcccchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCChHHHHHHHcccC--CeEEEecCCCccceeEEEE
Q 002135 402 VVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLS--TLELIQNDGSPCAQKLFVL 479 (961)
Q Consensus 402 VVIDEaH~~~~~fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~~e~~~~L~~~~--~~~~i~~~g~p~~~~~~~l 479 (961)
|||||+|.+.+.+|..++.++.|+.+..... +.++|+|++|||++|+.+.+.||.... ....+..+.+|.+....++
T Consensus 211 vIiDEvH~l~d~RG~~lE~~l~rl~~~~~~~-~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~ 289 (1724)
T 4f92_B 211 IILDEIHLLHDDRGPVLEALVARAIRNIEMT-QEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYV 289 (1724)
T ss_dssp EEETTGGGGGSTTHHHHHHHHHHHHHHHHHH-TCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECC
T ss_pred EEEecchhcCCccHHHHHHHHHHHHHHHHhC-CCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCCCccCccEEEEe
Confidence 9999999887789999999999988765442 567899999999999999999885421 2345566666666544322
Q ss_pred eCCCccccccccccccccchhhhcccCCCCcHHHHHHHHHH-HHH--CCCcEEEEecChHHHHHHHHHHHHHHHhhC---
Q 002135 480 WNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAE-MVQ--HGLRCIAFCRSRKLCELVLSYTREILEETA--- 553 (961)
Q Consensus 480 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-l~~--~g~k~IVF~~sr~~ae~l~~~L~~~l~~~~--- 553 (961)
..+... .. .........+.. +.+ .+.++||||+||+.|+.+++.+.+...+..
T Consensus 290 ~~~~~~-----------~~----------~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~ 348 (1724)
T 4f92_B 290 GITEKK-----------AI----------KRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLG 348 (1724)
T ss_dssp EECCCC-----------HH----------HHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTT
T ss_pred ccCCcc-----------hh----------hhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchh
Confidence 111100 00 000111111111 111 356899999999999999998876543211
Q ss_pred --------------------------CcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEeccccccccccCCccEEEE
Q 002135 554 --------------------------PHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLH 607 (961)
Q Consensus 554 --------------------------~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~aLe~GIDIp~vd~VI~ 607 (961)
..+..+|++|||||++++|..+|+.|++|.++|||||++|++|||+|..++||.
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~ 428 (1724)
T 4f92_B 349 LFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIK 428 (1724)
T ss_dssp CCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEE
T ss_pred hhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEe
Confidence 012346899999999999999999999999999999999999999999999995
Q ss_pred ----eC------CCCCHhhHHHHhccCCCCCC--CceEEEEeeCCcchhH
Q 002135 608 ----LG------FPGSIASLWQQAGRSGRRER--PSLAVYVAFEGPLDQY 645 (961)
Q Consensus 608 ----~~------~P~s~~sy~QR~GRAGR~g~--~g~~i~l~~~~~~d~~ 645 (961)
|+ .|.+..+|+||+|||||.|. .|.+++++..++.+.|
T Consensus 429 ~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~ 478 (1724)
T 4f92_B 429 GTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYY 478 (1724)
T ss_dssp CCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHH
T ss_pred CCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHH
Confidence 33 35699999999999999975 5888888876655543
No 22
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-42 Score=432.74 Aligned_cols=373 Identities=20% Similarity=0.256 Sum_probs=272.5
Q ss_pred CceEEeeecCCcccccccCCccccHHHHHHHHhCCCCCCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhc
Q 002135 218 GQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSH 297 (961)
Q Consensus 218 ~~iv~~~~~p~~~~~f~~l~~~L~~~l~~~L~~~g~~~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~ 297 (961)
.+++|...+|++. .+.++++.+.|.. .+.++|+ |+++|.+|++.+.+|+++++++|||||||++|.+|++..+..
T Consensus 54 ~~~~h~~~~p~~~-~~~~~~~~~~p~~---~~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~ 128 (1010)
T 2xgj_A 54 HQVRHQVALPPNY-DYTPIAEHKRVNE---ARTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN 128 (1010)
T ss_dssp EEEEEEEECCTTC-CCCCGGGCCCSSC---SCCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred cCceeeecCCCCc-ccCCCCcccChhh---HHhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc
Confidence 4577777888775 4455543343332 3457885 999999999999999999999999999999999999988754
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHHhHhhCCCCccEEEEcCCCcHHHHHHHhcCCcEEEeChhHHHHhhcCCCchhHHHh
Q 002135 298 DLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRIL 377 (961)
Q Consensus 298 ~~~~~aLvl~PtraLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~~~r~~l~~~~~IlItTPe~L~~~lL~~~~~~~~~L 377 (961)
+.++||++||++|++|+++++.+++. .+++++|+.... .+++|+|+||++|..++. +....+
T Consensus 129 --g~rvL~l~PtkaLa~Q~~~~l~~~~~------~vglltGd~~~~------~~~~IvV~Tpe~L~~~L~----~~~~~l 190 (1010)
T 2xgj_A 129 --KQRVIYTSPIKALSNQKYRELLAEFG------DVGLMTGDITIN------PDAGCLVMTTEILRSMLY----RGSEVM 190 (1010)
T ss_dssp --TCEEEEEESSHHHHHHHHHHHHHHHS------CEEEECSSCEEC------TTCSEEEEEHHHHHHHHH----HTCTTG
T ss_pred --CCeEEEECChHHHHHHHHHHHHHHhC------CEEEEeCCCccC------CCCCEEEEcHHHHHHHHH----cCcchh
Confidence 67999999999999999999988754 578889987543 358999999999987652 122334
Q ss_pred hhhhhhhhhcchhhhhhhhcceeEEEEecchhhhcc-cchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCChHHHHHHH
Q 002135 378 SNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGA-FGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMEL 456 (961)
Q Consensus 378 ~~l~~~~~~~~~~~~~~~~~~i~~VVIDEaH~~~~~-fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~~e~~~~L 456 (961)
.++ ++|||||+|++.+. +|..+..++..+ ..++|+|++|||++|+.++..++
T Consensus 191 ~~l-------------------~lVViDEaH~l~d~~rg~~~e~il~~l--------~~~~~il~LSATi~n~~e~a~~l 243 (1010)
T 2xgj_A 191 REV-------------------AWVIFDEVHYMRDKERGVVWEETIILL--------PDKVRYVFLSATIPNAMEFAEWI 243 (1010)
T ss_dssp GGE-------------------EEEEEETGGGGGCTTTHHHHHHHHHHS--------CTTCEEEEEECCCTTHHHHHHHH
T ss_pred hcC-------------------CEEEEechhhhcccchhHHHHHHHHhc--------CCCCeEEEEcCCCCCHHHHHHHH
Confidence 455 99999999999873 787777665533 35789999999999998888877
Q ss_pred cc--cCCeEEEecCCCccceeEEEEeCCCccccccccccc-cccchhhh---ccc-------------C------CCC--
Q 002135 457 AN--LSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQ-TDMDDTRN---AAN-------------K------TSS-- 509 (961)
Q Consensus 457 ~~--~~~~~~i~~~g~p~~~~~~~l~~p~~~~~~~~~~~~-~~~~~~~~---~~~-------------~------~~~-- 509 (961)
.. .....++..+++|.+...++...+........+... ........ ... . ...
T Consensus 244 ~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~ 323 (1010)
T 2xgj_A 244 CKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSA 323 (1010)
T ss_dssp HHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC-------------------------
T ss_pred HhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhcccccccccccccccccccccc
Confidence 42 234677778888888776666533110000000000 00000000 000 0 000
Q ss_pred ---cHHHHHHHHHHHHHCC-CcEEEEecChHHHHHHHHHHHHH--------------HHh-----------------hCC
Q 002135 510 ---PISEVSYLFAEMVQHG-LRCIAFCRSRKLCELVLSYTREI--------------LEE-----------------TAP 554 (961)
Q Consensus 510 ---~~~~~~~ll~~l~~~g-~k~IVF~~sr~~ae~l~~~L~~~--------------l~~-----------------~~~ 554 (961)
....+..++..+...+ .++||||++++.|+.++..+... +.. ..+
T Consensus 324 ~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~ 403 (1010)
T 2xgj_A 324 KGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILP 403 (1010)
T ss_dssp -----CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHH
T ss_pred cccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHH
Confidence 0223445555555444 59999999999999998876531 000 000
Q ss_pred cccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEeccccccccccCCccEEEE----eCC----CCCHhhHHHHhccCCC
Q 002135 555 HLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLH----LGF----PGSIASLWQQAGRSGR 626 (961)
Q Consensus 555 ~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~aLe~GIDIp~vd~VI~----~~~----P~s~~sy~QR~GRAGR 626 (961)
.+..++..||||+++.+|+.+++.|++|.++|||||+++++|||+|++++||+ ||. |.|..+|+||+|||||
T Consensus 404 ~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR 483 (1010)
T 2xgj_A 404 LLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGR 483 (1010)
T ss_dssp HHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCC
T ss_pred HHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhccc
Confidence 12235899999999999999999999999999999999999999999999999 998 8899999999999999
Q ss_pred CCC--CceEEEEeeCC
Q 002135 627 RER--PSLAVYVAFEG 640 (961)
Q Consensus 627 ~g~--~g~~i~l~~~~ 640 (961)
.|. .|.+++++...
T Consensus 484 ~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 484 RGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp TTTCSSEEEEEEECSC
T ss_pred CCCCCceEEEEEECCC
Confidence 987 48888887644
No 23
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=3.5e-41 Score=389.66 Aligned_cols=349 Identities=15% Similarity=0.157 Sum_probs=245.6
Q ss_pred HHHHHHHHh-CCCCCCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHHHHHHHHHHH
Q 002135 242 DNTKSALKS-TGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL 320 (961)
Q Consensus 242 ~~l~~~L~~-~g~~~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~PtraLa~qq~~~l 320 (961)
+++.+.+++ +|+ +|+++|.++++.+++|+|+++++|||||||++|++|++..+ ..+.++|||+||++|+.|+.+++
T Consensus 8 ~~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~--~~~~~~lil~Pt~~L~~q~~~~~ 84 (414)
T 3oiy_A 8 EDFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA--RKGKKSALVFPTVTLVKQTLERL 84 (414)
T ss_dssp HHHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH--TTTCCEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh--cCCCEEEEEECCHHHHHHHHHHH
Confidence 344555654 577 79999999999999999999999999999999999998876 34789999999999999999999
Q ss_pred HHhHhhCCCCccEEEEcCCCcHHHH----HHHhcC-CcEEEeChhHHHHhhcCCCchhHHHhhhhhhhhhhcchhhhhhh
Q 002135 321 LAMTKAFDASIDIGVYDGDTTQKDR----MWLRDN-ARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLI 395 (961)
Q Consensus 321 ~~l~~~~~~~i~v~~~~Gd~~~~~r----~~l~~~-~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~~~~~~~~~~~~ 395 (961)
++++. .++.+..+.|+....++ ..+..+ ++|+|+||++|.+.+. ...+.+
T Consensus 85 ~~~~~---~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~------~~~~~~---------------- 139 (414)
T 3oiy_A 85 QKLAD---EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNRE------KLSQKR---------------- 139 (414)
T ss_dssp HHHCC---SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHH------HHTTCC----------------
T ss_pred HHHcc---CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHH------Hhcccc----------------
Confidence 99765 34788999998876433 345555 9999999999976541 112223
Q ss_pred hcceeEEEEecchhhhc------------ccchH-HHHHHHHHHH--Hhhccc-CCCCcEEEeccCCCChH---HHHHHH
Q 002135 396 FLFIRFVVIDEAHAYKG------------AFGCH-TALILRRLCR--LCSHVY-GSDPSFVFSTATSANPR---EHCMEL 456 (961)
Q Consensus 396 ~~~i~~VVIDEaH~~~~------------~fg~~-~~~ilrrL~~--~~~~~~-~~~~q~I~lSATl~n~~---e~~~~L 456 (961)
+++||+||||++.. +|..+ +..++..++. ....+. ....|++++|||+.+.. .....+
T Consensus 140 ---~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~ 216 (414)
T 3oiy_A 140 ---FDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDL 216 (414)
T ss_dssp ---CSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHH
T ss_pred ---ccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHh
Confidence 39999999998863 24444 4444444420 000100 14679999999943321 233333
Q ss_pred cccCCeEEEecCCCccceeEEEEeCCCccccccccccccccchhhhcccCCCCcHHHHHHHHHHHHHCCCcEEEEecChH
Q 002135 457 ANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRK 536 (961)
Q Consensus 457 ~~~~~~~~i~~~g~p~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~k~IVF~~sr~ 536 (961)
.+.. ..............+. ..++...+..++.. .+.++||||++++
T Consensus 217 ~~~~---~~~~~~~~~~i~~~~~---------------------------~~~~~~~l~~~l~~---~~~~~lVF~~~~~ 263 (414)
T 3oiy_A 217 LNFT---VGRLVSVARNITHVRI---------------------------SSRSKEKLVELLEI---FRDGILIFAQTEE 263 (414)
T ss_dssp HSCC---SSCCCCCCCSEEEEEE---------------------------SSCCHHHHHHHHHH---HCSSEEEEESSHH
T ss_pred hccC---cCccccccccchheee---------------------------ccCHHHHHHHHHHH---cCCCEEEEECCHH
Confidence 3311 0000000111111110 11334445555554 4579999999999
Q ss_pred HHHHHHHHHHHHHHhhCCcccccEE-EEcCCCCHHHHHHHHHHHhCCCceEEEe----ccccccccccCC-ccEEEEeCC
Q 002135 537 LCELVLSYTREILEETAPHLVDSIC-VYRAGYVAEDRRRIERDFFGGKLCGVAA----TNALELGIDVGH-IDVTLHLGF 610 (961)
Q Consensus 537 ~ae~l~~~L~~~l~~~~~~l~~~v~-~~hggls~~eR~~ie~~f~~G~~~vLVA----T~aLe~GIDIp~-vd~VI~~~~ 610 (961)
.|+.++..|++ .+..+. .+||. +| + ++.|++|++++||| |+++++|||+|+ +++||++|+
T Consensus 264 ~~~~l~~~L~~--------~~~~~~~~~h~~----~r-~-~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~ 329 (414)
T 3oiy_A 264 EGKELYEYLKR--------FKFNVGETWSEF----EK-N-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGT 329 (414)
T ss_dssp HHHHHHHHHHH--------TTCCEEESSSCH----HH-H-HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESC
T ss_pred HHHHHHHHHHH--------cCCceehhhcCc----ch-H-HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEEECC
Confidence 99999998876 344676 88884 44 4 99999999999999 999999999999 999999999
Q ss_pred C--CCHhhHHHHhccCCCCC----CCceEEEEeeCCcchhHHHhchHHhhc--CCCcccccCCCCHHHHH
Q 002135 611 P--GSIASLWQQAGRSGRRE----RPSLAVYVAFEGPLDQYFMKYPEKLFK--SPIECCHIDAQNHKVLE 672 (961)
Q Consensus 611 P--~s~~sy~QR~GRAGR~g----~~g~~i~l~~~~~~d~~~~~~~e~l~~--~~ie~~~~~~~n~~vl~ 672 (961)
| .|..+|+||+|||||.| +.|.+++++ .|..+.+..++.++ .+++...++..+...+.
T Consensus 330 p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 395 (414)
T 3oiy_A 330 PSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE----EDEEIFESLKTRLLLIAEEEIIEEAEANWKELV 395 (414)
T ss_dssp CTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC----CCHHHHHHHHHHHHHHHCCCEEEGGGCCHHHHH
T ss_pred CCCCCHHHHHHHhCccccCCCCCCcceEEEEEE----ccHHHHHHHHHHhcccccccccccccccHHHHH
Confidence 9 99999999999999997 578888777 23444455555555 55555555555444433
No 24
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-41 Score=432.49 Aligned_cols=366 Identities=20% Similarity=0.249 Sum_probs=262.2
Q ss_pred ccccccCCccccHHHHHHHHhCCCCCCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEccc
Q 002135 230 KAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPT 309 (961)
Q Consensus 230 ~~~f~~l~~~L~~~l~~~L~~~g~~~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~Pt 309 (961)
++.|..++ +++.+...+...+.-.|+++|.+||+.+++|++++++||||||||++|.+|++..+.. +.++||++||
T Consensus 161 ~~~~~~~~--l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~--g~rvlvl~Pt 236 (1108)
T 3l9o_A 161 PPNYDYTP--IAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN--KQRVIYTSPI 236 (1108)
T ss_dssp SSCCCSST--TTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT--TCEEEEEESS
T ss_pred CCCcccCC--CChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc--CCeEEEEcCc
Confidence 33455442 4444444444445557999999999999999999999999999999999999998854 6799999999
Q ss_pred HHHHHHHHHHHHHhHhhCCCCccEEEEcCCCcHHHHHHHhcCCcEEEeChhHHHHhhcCCCchhHHHhhhhhhhhhhcch
Q 002135 310 KALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVT 389 (961)
Q Consensus 310 raLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~~~r~~l~~~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~~~~~~ 389 (961)
++|+.|+++++.+++. .++++.|+.. +..+++|+|+||++|.+++... ...+.++
T Consensus 237 raLa~Q~~~~l~~~~~------~VglltGd~~------~~~~~~IlV~Tpe~L~~~L~~~----~~~l~~l--------- 291 (1108)
T 3l9o_A 237 KALSNQKYRELLAEFG------DVGLMTGDIT------INPDAGCLVMTTEILRSMLYRG----SEVMREV--------- 291 (1108)
T ss_dssp HHHHHHHHHHHHHHTS------SEEEECSSCB------CCCSCSEEEEEHHHHHHHHHHC----SSHHHHE---------
T ss_pred HHHHHHHHHHHHHHhC------CccEEeCccc------cCCCCCEEEeChHHHHHHHHcC----ccccccC---------
Confidence 9999999999998754 4778889875 3346899999999998776321 1235555
Q ss_pred hhhhhhhcceeEEEEecchhhhc-ccchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCChHHHHHHHccc--CCeEEEe
Q 002135 390 TEVYLIFLFIRFVVIDEAHAYKG-AFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL--STLELIQ 466 (961)
Q Consensus 390 ~~~~~~~~~i~~VVIDEaH~~~~-~fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~~e~~~~L~~~--~~~~~i~ 466 (961)
++|||||||++.+ .||..+..++..+ +..+|+|++|||++|..++..++... ....++.
T Consensus 292 ----------~lVVIDEaH~l~d~~rg~~~e~ii~~l--------~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~ 353 (1108)
T 3l9o_A 292 ----------AWVIFDEVHYMRDKERGVVWEETIILL--------PDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVY 353 (1108)
T ss_dssp ----------EEEEEETGGGTTSHHHHHHHHHHHHHS--------CTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEE
T ss_pred ----------CEEEEhhhhhccccchHHHHHHHHHhc--------CCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEe
Confidence 9999999999987 4787777666543 45789999999999998877776432 2467777
Q ss_pred cCCCccceeEEEEeCCCcccccccccccc-ccchhhhcc---------------------------cCCCCcHHHHHHHH
Q 002135 467 NDGSPCAQKLFVLWNPTSCLRSVLNKSQT-DMDDTRNAA---------------------------NKTSSPISEVSYLF 518 (961)
Q Consensus 467 ~~g~p~~~~~~~l~~p~~~~~~~~~~~~~-~~~~~~~~~---------------------------~~~~~~~~~~~~ll 518 (961)
.+.+|.+...+++...........+.... ......... .........+..++
T Consensus 354 ~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li 433 (1108)
T 3l9o_A 354 TNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIV 433 (1108)
T ss_dssp ECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHH
T ss_pred cCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHH
Confidence 88888777655543221110000000000 000000000 00001134455566
Q ss_pred HHHHHCC-CcEEEEecChHHHHHHHHHHHHHHHh-------------------------------hCCcccccEEEEcCC
Q 002135 519 AEMVQHG-LRCIAFCRSRKLCELVLSYTREILEE-------------------------------TAPHLVDSICVYRAG 566 (961)
Q Consensus 519 ~~l~~~g-~k~IVF~~sr~~ae~l~~~L~~~l~~-------------------------------~~~~l~~~v~~~hgg 566 (961)
..+...+ .++||||++++.|+.++..|....-. ..+.+..+|..|||+
T Consensus 434 ~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~ 513 (1108)
T 3l9o_A 434 KMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSG 513 (1108)
T ss_dssp HHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSC
T ss_pred HHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCC
Confidence 6655554 59999999999999999877532110 111122348999999
Q ss_pred CCHHHHHHHHHHHhCCCceEEEeccccccccccCCccEEEEeCC--------CCCHhhHHHHhccCCCCC--CCceEEEE
Q 002135 567 YVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGF--------PGSIASLWQQAGRSGRRE--RPSLAVYV 636 (961)
Q Consensus 567 ls~~eR~~ie~~f~~G~~~vLVAT~aLe~GIDIp~vd~VI~~~~--------P~s~~sy~QR~GRAGR~g--~~g~~i~l 636 (961)
|++.+|+.+++.|++|.++|||||+++++|||+|++++||+++. |.|..+|+||+|||||.| ..|.++++
T Consensus 514 l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill 593 (1108)
T 3l9o_A 514 LLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMM 593 (1108)
T ss_dssp SCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEE
T ss_pred CCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEE
Confidence 99999999999999999999999999999999999999997765 347788999999999999 57888877
Q ss_pred eeCCcc
Q 002135 637 AFEGPL 642 (961)
Q Consensus 637 ~~~~~~ 642 (961)
+.....
T Consensus 594 ~~~~~~ 599 (1108)
T 3l9o_A 594 IDEKME 599 (1108)
T ss_dssp ECCCCC
T ss_pred ecCCcC
Confidence 755433
No 25
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9e-43 Score=413.73 Aligned_cols=370 Identities=15% Similarity=0.190 Sum_probs=218.6
Q ss_pred eecCCcccccccCCccccHHHHHHHHhCCCCCCcHHHHHHHHHHhCC--CcEEEEecCCchhHHHHHHHHHHHHhcCC-C
Q 002135 224 EDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAG--KNVVVATMTSSGKSLCYNLPVLEALSHDL-S 300 (961)
Q Consensus 224 ~~~p~~~~~f~~l~~~L~~~l~~~L~~~g~~~l~~~Q~~ai~~il~G--~~vIv~apTGSGKTla~~Lpil~~l~~~~-~ 300 (961)
.+.|.+...|.-.+.++++.+.+.|.+.|+..|+++|.+|++.+++| +++++++|||||||++|++|++..+.... +
T Consensus 110 ~~~~~p~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~ 189 (508)
T 3fho_A 110 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPK 189 (508)
T ss_dssp -----------------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCS
T ss_pred cccccccccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCC
Confidence 33444433343333478899999999999999999999999999998 99999999999999999999999987643 5
Q ss_pred CeEEEEcccHHHHHHHHHHHHHhHhhCCCCccEEEEcCCCcHHHHHHHhcCCcEEEeChhHHHHhhcCCCchhHHHhhhh
Q 002135 301 SSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNL 380 (961)
Q Consensus 301 ~~aLvl~PtraLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~~~r~~l~~~~~IlItTPe~L~~~lL~~~~~~~~~L~~l 380 (961)
.++||++|+++|+.|+.+++++++...+ +.+....++... .....+++|+|+||++|...+.... ..+.++
T Consensus 190 ~~vLvl~P~~~L~~Q~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~Ivv~T~~~l~~~l~~~~----~~~~~~ 260 (508)
T 3fho_A 190 PQAICLAPSRELARQIMDVVTEMGKYTE--VKTAFGIKDSVP---KGAKIDAQIVIGTPGTVMDLMKRRQ----LDARDI 260 (508)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHSTTSS--CCEEC-------------CCCCSEEEECHHHHHHHHHTTC----SCCTTC
T ss_pred ceEEEEECcHHHHHHHHHHHHHhCCccC--eeEEEEeCCccc---ccccCCCCEEEECHHHHHHHHHcCC----ccccCC
Confidence 6899999999999999999999876544 333333333222 1223468999999999876542211 113333
Q ss_pred hhhhhhcchhhhhhhhcceeEEEEecchhhhcccchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCChHH-HHHHHccc
Q 002135 381 RLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPRE-HCMELANL 459 (961)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~i~~VVIDEaH~~~~~fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~~e-~~~~L~~~ 459 (961)
++|||||||++.+..+ +...+..+.... ..+.|+|++|||+++..+ ....+.+.
T Consensus 261 -------------------~lIIiDEaH~~~~~~~--~~~~~~~i~~~~----~~~~~~i~lSAT~~~~~~~~~~~~~~~ 315 (508)
T 3fho_A 261 -------------------KVFVLDEADNMLDQQG--LGDQSMRIKHLL----PRNTQIVLFSATFSERVEKYAERFAPN 315 (508)
T ss_dssp -------------------CEEEECCHHHHTTC----CHHHHHHHHHHS----CTTCEEEEEESCCSTHHHHHHHHHSTT
T ss_pred -------------------CEEEEechhhhcccCC--cHHHHHHHHHhC----CcCCeEEEEeCCCCHHHHHHHHHhcCC
Confidence 9999999999976322 122223333322 446899999999987543 33344332
Q ss_pred CCeEEEecCCCccc---eeEEEEeCCCccccccccccccccchhhhcccCCCCcHHHHHHHHHHHHHCCCcEEEEecChH
Q 002135 460 STLELIQNDGSPCA---QKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRK 536 (961)
Q Consensus 460 ~~~~~i~~~g~p~~---~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~k~IVF~~sr~ 536 (961)
...+........ ....... ......+...+..++... .+.++||||++++
T Consensus 316 --~~~i~~~~~~~~~~~~~~~~~~-----------------------~~~~~~k~~~l~~ll~~~--~~~~~LVF~~s~~ 368 (508)
T 3fho_A 316 --ANEIRLKTEELSVEGIKQLYMD-----------------------CQSEEHKYNVLVELYGLL--TIGQSIIFCKKKD 368 (508)
T ss_dssp --CEEECCCCCC----CCCCEEEE-----------------------C--CHHHHHHHHHHHC-----CCCEEEBCSSTT
T ss_pred --CeEEEeccccCCcccceEEEEE-----------------------CCchHHHHHHHHHHHHhc--CCCcEEEEECCHH
Confidence 222222111100 0000000 000111112222222211 4579999999999
Q ss_pred HHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEeccccccccccCCccEEEEeCCC-----
Q 002135 537 LCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFP----- 611 (961)
Q Consensus 537 ~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~aLe~GIDIp~vd~VI~~~~P----- 611 (961)
.|+.++..|++ .+..+..+||++++.+|+.+++.|++|+.+|||||+++++|||+|++++||++++|
T Consensus 369 ~a~~l~~~L~~--------~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~ 440 (508)
T 3fho_A 369 TAEEIARRMTA--------DGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAG 440 (508)
T ss_dssp TTTHHHHHHTT--------TTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC---
T ss_pred HHHHHHHHHHh--------CCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcccC
Confidence 99999887754 34578899999999999999999999999999999999999999999999999999
Q ss_pred -CCHhhHHHHhccCCCCCCCceEEEEeeCCcchhHHHhchHHhhcCCCccccc
Q 002135 612 -GSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHI 663 (961)
Q Consensus 612 -~s~~sy~QR~GRAGR~g~~g~~i~l~~~~~~d~~~~~~~e~l~~~~ie~~~~ 663 (961)
.|..+|+||+|||||.|++|.+++++... .+...++.+++.++.+++....
T Consensus 441 ~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~-~~~~~~~~i~~~~~~~i~~l~~ 492 (508)
T 3fho_A 441 RPDPQTYLHRIGRTGRFGRVGVSINFVHDK-KSWEEMNAIQEYFQRPITRVPT 492 (508)
T ss_dssp --CTHHHHHTTSCCC-----CEEEEEECTT-TSSSSHHHHHHHSCCCCC----
T ss_pred CCCHHHHHHHhhhcCCCCCCcEEEEEEeCh-HHHHHHHHHHHHHCCCcccCCC
Confidence 88999999999999999999999887533 3445556677888877766544
No 26
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=3.7e-40 Score=393.91 Aligned_cols=360 Identities=16% Similarity=0.164 Sum_probs=223.4
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcCC---CCeEEEEcccHHHHHHHHHHHHHhHhhCCCCc
Q 002135 255 KLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDL---SSSALYMFPTKALAQDQLRALLAMTKAFDASI 331 (961)
Q Consensus 255 ~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~~---~~~aLvl~PtraLa~qq~~~l~~l~~~~~~~i 331 (961)
+|+++|.++++.+++|+++++++|||||||++|++|+++.+...+ +.++|||+||++|+.|+.+.+.+++...+ +
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~--~ 81 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLG--Y 81 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTT--C
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCC--c
Confidence 699999999999999999999999999999999999999988765 78899999999999999999999987654 7
Q ss_pred cEEEEcCCCcHHH-HHHHhcCCcEEEeChhHHHHhhcCCCchhHHHhhhhhhhhhhcchhhhhhhhcceeEEEEecchhh
Q 002135 332 DIGVYDGDTTQKD-RMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAY 410 (961)
Q Consensus 332 ~v~~~~Gd~~~~~-r~~l~~~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~i~~VVIDEaH~~ 410 (961)
.+..+.|+..... ...+..+++|+|+||++|...+.... ...+.++ ++|||||||++
T Consensus 82 ~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~---~~~~~~~-------------------~~vViDEah~~ 139 (555)
T 3tbk_A 82 NIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGA---IPSLSVF-------------------TLMIFDECHNT 139 (555)
T ss_dssp CEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSS---SCCGGGC-------------------SEEEETTGGGC
T ss_pred EEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCc---ccccccC-------------------CEEEEECcccc
Confidence 7888888875543 34455679999999999977652111 0123444 99999999999
Q ss_pred hcccchHHHHHH-HHHHHHhhcccCCCCcEEEeccCCCChH--------HHHHHHcccCCeEEEecCC---------Ccc
Q 002135 411 KGAFGCHTALIL-RRLCRLCSHVYGSDPSFVFSTATSANPR--------EHCMELANLSTLELIQNDG---------SPC 472 (961)
Q Consensus 411 ~~~fg~~~~~il-rrL~~~~~~~~~~~~q~I~lSATl~n~~--------e~~~~L~~~~~~~~i~~~g---------~p~ 472 (961)
.+. +. +..++ +.+........+..++++++|||+.+.. +.+..+........+.... ...
T Consensus 140 ~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~ 217 (555)
T 3tbk_A 140 SKN-HP-YNQIMFRYLDHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYK 217 (555)
T ss_dssp STT-CH-HHHHHHHHHHHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCC
T ss_pred CCc-ch-HHHHHHHHHHhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCC
Confidence 763 33 44444 3333332222235679999999996532 2222332222211111111 111
Q ss_pred ceeEEEEeCCCccccccc--------------------------ccccccc-------c---------------------
Q 002135 473 AQKLFVLWNPTSCLRSVL--------------------------NKSQTDM-------D--------------------- 498 (961)
Q Consensus 473 ~~~~~~l~~p~~~~~~~~--------------------------~~~~~~~-------~--------------------- 498 (961)
+........+........ ....... .
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (555)
T 3tbk_A 218 PQKISRKVASRTSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVC 297 (555)
T ss_dssp CCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHH
T ss_pred CceEEEEecCcccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHH
Confidence 122222222111000000 0000000 0
Q ss_pred ---------------------------------hh------------------------------hhcccCCCCcHHHHH
Q 002135 499 ---------------------------------DT------------------------------RNAANKTSSPISEVS 515 (961)
Q Consensus 499 ---------------------------------~~------------------------------~~~~~~~~~~~~~~~ 515 (961)
.. .........+...+.
T Consensus 298 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 377 (555)
T 3tbk_A 298 KALFLYTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLY 377 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHH
Confidence 00 000001233444555
Q ss_pred HHHHHHHH--CCCcEEEEecChHHHHHHHHHHHHHHHhh----CCcccccEEEEcCCCCHHHHHHHHHHHhC-CCceEEE
Q 002135 516 YLFAEMVQ--HGLRCIAFCRSRKLCELVLSYTREILEET----APHLVDSICVYRAGYVAEDRRRIERDFFG-GKLCGVA 588 (961)
Q Consensus 516 ~ll~~l~~--~g~k~IVF~~sr~~ae~l~~~L~~~l~~~----~~~l~~~v~~~hggls~~eR~~ie~~f~~-G~~~vLV 588 (961)
.++..... .+.++||||++++.++.++..|+...... ....+.....+||++++++|.+++++|++ |+++|||
T Consensus 378 ~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLv 457 (555)
T 3tbk_A 378 LVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILI 457 (555)
T ss_dssp HHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEE
T ss_pred HHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEE
Confidence 55555443 34799999999999999999887631100 00112345667889999999999999999 9999999
Q ss_pred eccccccccccCCccEEEEeCCCCCHhhHHHHhccCCCCCCCceEEEEeeCCcc
Q 002135 589 ATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPL 642 (961)
Q Consensus 589 AT~aLe~GIDIp~vd~VI~~~~P~s~~sy~QR~GRAGR~g~~g~~i~l~~~~~~ 642 (961)
||+++++|||+|++++||+||+|+|..+|+||+|| ||. ++|.+++++..+..
T Consensus 458 aT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~ 509 (555)
T 3tbk_A 458 ATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADV 509 (555)
T ss_dssp ECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHH
T ss_pred EcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCH
Confidence 99999999999999999999999999999999999 998 88999888755433
No 27
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=1.9e-40 Score=397.04 Aligned_cols=364 Identities=15% Similarity=0.139 Sum_probs=195.3
Q ss_pred CCCCCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcCC---CCeEEEEcccHHHHHHHHHHHHHhHhhCC
Q 002135 252 GISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDL---SSSALYMFPTKALAQDQLRALLAMTKAFD 328 (961)
Q Consensus 252 g~~~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~~---~~~aLvl~PtraLa~qq~~~l~~l~~~~~ 328 (961)
+.-+|+++|.++++.+++|+++++++|||||||++|++|++..+...+ +.++|||+||++|+.|+.+.+++++...+
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 83 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQG 83 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGT
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 344799999999999999999999999999999999999999988765 78899999999999999999999987654
Q ss_pred CCccEEEEcCCCcHHH-HHHHhcCCcEEEeChhHHHHhhcCCCchhHHHhhhhhhhhhhcchhhhhhhhcceeEEEEecc
Q 002135 329 ASIDIGVYDGDTTQKD-RMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEA 407 (961)
Q Consensus 329 ~~i~v~~~~Gd~~~~~-r~~l~~~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~i~~VVIDEa 407 (961)
+.+..++|+..... ...+..+++|+|+||++|...+.... ...+.++ ++||||||
T Consensus 84 --~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~---~~~~~~~-------------------~~vViDEa 139 (556)
T 4a2p_A 84 --YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT---LTSLSIF-------------------TLMIFDEC 139 (556)
T ss_dssp --CCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSS---CCCSTTC-------------------SEEEEETG
T ss_pred --ceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCc---ccccccC-------------------CEEEEECC
Confidence 67888888875443 34455679999999999987652110 0123344 99999999
Q ss_pred hhhhcccchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCCh--H------HHHHHHcccCCeEEEecCC---------C
Q 002135 408 HAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANP--R------EHCMELANLSTLELIQNDG---------S 470 (961)
Q Consensus 408 H~~~~~fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~--~------e~~~~L~~~~~~~~i~~~g---------~ 470 (961)
|++.+ .+. +..++.++...........+++|++|||+... . +.+..+........+.... .
T Consensus 140 h~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~ 217 (556)
T 4a2p_A 140 HNTTG-NHP-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFM 217 (556)
T ss_dssp GGCST-TSH-HHHHHHHHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHT
T ss_pred cccCC-cch-HHHHHHHHHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcC
Confidence 99976 333 44444333222111113568999999999532 1 1222221111111111110 0
Q ss_pred ccceeEEEEeCCCccccccc-------------------------ccccccc-------ch-------------------
Q 002135 471 PCAQKLFVLWNPTSCLRSVL-------------------------NKSQTDM-------DD------------------- 499 (961)
Q Consensus 471 p~~~~~~~l~~p~~~~~~~~-------------------------~~~~~~~-------~~------------------- 499 (961)
..+........+........ ....... ..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (556)
T 4a2p_A 218 NKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRI 297 (556)
T ss_dssp CCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHH
T ss_pred CCCceEEEEcCCCcCChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHH
Confidence 11111111111100000000 0000000 00
Q ss_pred -----------------------------------------------------------------hhhcccCCCCcHHHH
Q 002135 500 -----------------------------------------------------------------TRNAANKTSSPISEV 514 (961)
Q Consensus 500 -----------------------------------------------------------------~~~~~~~~~~~~~~~ 514 (961)
..........+...+
T Consensus 298 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L 377 (556)
T 4a2p_A 298 CRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEEL 377 (556)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHH
Confidence 000000113344444
Q ss_pred HHHHHHHH--HCCCcEEEEecChHHHHHHHHHHHHHHH--hh--CCcccccEEEEcCCCCHHHHHHHHHHHhC-CCceEE
Q 002135 515 SYLFAEMV--QHGLRCIAFCRSRKLCELVLSYTREILE--ET--APHLVDSICVYRAGYVAEDRRRIERDFFG-GKLCGV 587 (961)
Q Consensus 515 ~~ll~~l~--~~g~k~IVF~~sr~~ae~l~~~L~~~l~--~~--~~~l~~~v~~~hggls~~eR~~ie~~f~~-G~~~vL 587 (961)
..++.... ..+.++||||++++.++.++..|++... .. ....+.....+||++++++|.+++++|++ |+++||
T Consensus 378 ~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vL 457 (556)
T 4a2p_A 378 VCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLL 457 (556)
T ss_dssp HHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEE
T ss_pred HHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEE
Confidence 45554433 3468999999999999999988865210 00 01123345677899999999999999999 999999
Q ss_pred EeccccccccccCCccEEEEeCCCCCHhhHHHHhccCCCCCCCceEEEEeeCCcch
Q 002135 588 AATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLD 643 (961)
Q Consensus 588 VAT~aLe~GIDIp~vd~VI~~~~P~s~~sy~QR~GRAGR~g~~g~~i~l~~~~~~d 643 (961)
|||+++++|||+|++++||+||+|+|..+|+||+|| ||. ++|.+++++..+..+
T Consensus 458 vaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 458 IATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 511 (556)
T ss_dssp EEEC-----------CEEEEETCCSCHHHHHHC----------CCEEEEESCHHHH
T ss_pred EEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchH
Confidence 999999999999999999999999999999999999 999 889998887655443
No 28
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=4.8e-40 Score=405.16 Aligned_cols=364 Identities=16% Similarity=0.175 Sum_probs=207.7
Q ss_pred HHHHHhCCCCCCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcCC---CCeEEEEcccHHHHHHHHHHHH
Q 002135 245 KSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDL---SSSALYMFPTKALAQDQLRALL 321 (961)
Q Consensus 245 ~~~L~~~g~~~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~~---~~~aLvl~PtraLa~qq~~~l~ 321 (961)
..+|+.+|+.+|+++|.++++.+++|+|+|+++|||||||++|++|+++.+...+ +.++|||+||++|+.|+.+.++
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~ 82 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFS 82 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHH
Confidence 3567788999999999999999999999999999999999999999999887654 2789999999999999999999
Q ss_pred HhHhhCCCCccEEEEcCCCcH-HHHHHHhcCCcEEEeChhHHHHhhcCCCchhHHHhhhhhhhhhhcchhhhhhhhccee
Q 002135 322 AMTKAFDASIDIGVYDGDTTQ-KDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIR 400 (961)
Q Consensus 322 ~l~~~~~~~i~v~~~~Gd~~~-~~r~~l~~~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~i~ 400 (961)
+++... ++.+..+.|+... .+...+..+++|+|+||++|...+....- ..+.++ +
T Consensus 83 ~~~~~~--~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~---~~l~~~-------------------~ 138 (696)
T 2ykg_A 83 KYFERH--GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI---PSLSIF-------------------T 138 (696)
T ss_dssp HHTTTT--TCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSS---CCGGGC-------------------S
T ss_pred HHhccC--CceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcc---cccccc-------------------c
Confidence 987643 4778888887643 34455566899999999999876521100 013344 9
Q ss_pred EEEEecchhhhcccchHHHHHHHH-HHHHhhcccCCCCcEEEeccCCCC-----hHHHHHHH---cccCCeEEEecCCCc
Q 002135 401 FVVIDEAHAYKGAFGCHTALILRR-LCRLCSHVYGSDPSFVFSTATSAN-----PREHCMEL---ANLSTLELIQNDGSP 471 (961)
Q Consensus 401 ~VVIDEaH~~~~~fg~~~~~ilrr-L~~~~~~~~~~~~q~I~lSATl~n-----~~e~~~~L---~~~~~~~~i~~~g~p 471 (961)
+|||||||++.+. . .+..++.+ +...........+++|++|||+.+ ..+....+ ....+...+......
T Consensus 139 ~vViDEaH~~~~~-~-~~~~i~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~ 216 (696)
T 2ykg_A 139 LMIFDECHNTSKQ-H-PYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHN 216 (696)
T ss_dssp EEEEETGGGCSTT-C-HHHHHHHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTT
T ss_pred EEEEeCCCcccCc-c-cHHHHHHHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccc
Confidence 9999999999863 2 34444433 333222222457899999999963 12222222 211112222111110
Q ss_pred ---------cceeEEEEeCCC---ccccccc--------------c----c-----ccc---------------------
Q 002135 472 ---------CAQKLFVLWNPT---SCLRSVL--------------N----K-----SQT--------------------- 495 (961)
Q Consensus 472 ---------~~~~~~~l~~p~---~~~~~~~--------------~----~-----~~~--------------------- 495 (961)
.+.......... ....... . . ...
T Consensus 217 ~~~l~~~~~~p~~~~~~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (696)
T 2ykg_A 217 LEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQM 296 (696)
T ss_dssp HHHHHHHSCCCEEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC---
T ss_pred hHHHHhhcCCCceeEEecCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhc
Confidence 000000000000 0000000 0 0 000
Q ss_pred ----------------------------------------------------ccchhhhc------------------cc
Q 002135 496 ----------------------------------------------------DMDDTRNA------------------AN 505 (961)
Q Consensus 496 ----------------------------------------------------~~~~~~~~------------------~~ 505 (961)
........ ..
T Consensus 297 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 376 (696)
T 2ykg_A 297 PDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPS 376 (696)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGG
T ss_pred ccchhhhHHHHHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 00000000 00
Q ss_pred CCCCcHHHHHHHHHHHHH--CCCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEE--------cCCCCHHHHHHH
Q 002135 506 KTSSPISEVSYLFAEMVQ--HGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVY--------RAGYVAEDRRRI 575 (961)
Q Consensus 506 ~~~~~~~~~~~ll~~l~~--~g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~--------hggls~~eR~~i 575 (961)
....+...+..++..... .+.++||||++++.++.+++.|++... .....+..+ ||++++++|+++
T Consensus 377 ~~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~----~~~~~~~~l~G~~~~~~h~~~~~~eR~~v 452 (696)
T 2ykg_A 377 NENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPK----LSFLKPGILTGRGKTNQNTGMTLPAQKCI 452 (696)
T ss_dssp GCCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTT----CCSCCEEC---------------------
T ss_pred CCCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCC----ccccceeEEEccCCCccccCCCHHHHHHH
Confidence 122333444444444321 457999999999999999998876210 001234445 679999999999
Q ss_pred HHHHhC-CCceEEEeccccccccccCCccEEEEeCCCCCHhhHHHHhccCCCCCCCceEEEEeeCC
Q 002135 576 ERDFFG-GKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEG 640 (961)
Q Consensus 576 e~~f~~-G~~~vLVAT~aLe~GIDIp~vd~VI~~~~P~s~~sy~QR~GRAGR~g~~g~~i~l~~~~ 640 (961)
+++|++ |+.+|||||+++++|||+|++++||+||+|.|..+|+||+|| ||. ++|.+++++..+
T Consensus 453 ~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~ 516 (696)
T 2ykg_A 453 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNA 516 (696)
T ss_dssp --------CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCH
T ss_pred HHHHHhcCCccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCC
Confidence 999998 999999999999999999999999999999999999999999 998 788888777544
No 29
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=3.7e-38 Score=398.31 Aligned_cols=351 Identities=21% Similarity=0.285 Sum_probs=250.5
Q ss_pred hCCCCCCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHHHHHHHHHHHHHhHhhCCC
Q 002135 250 STGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDA 329 (961)
Q Consensus 250 ~~g~~~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~PtraLa~qq~~~l~~l~~~~~~ 329 (961)
.++| +|+++|.++|+.+++|+++++++|||||||++|++|+...+.. +.++||++|+++|+.|+++++.+++.
T Consensus 35 ~~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~--g~~vlvl~PtraLa~Q~~~~l~~~~~---- 107 (997)
T 4a4z_A 35 SWPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN--MTKTIYTSPIKALSNQKFRDFKETFD---- 107 (997)
T ss_dssp CCSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHTTC-----
T ss_pred hCCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHHcC----
Confidence 4577 5999999999999999999999999999999999999877653 67899999999999999999988643
Q ss_pred CccEEEEcCCCcHHHHHHHhcCCcEEEeChhHHHHhhcCCCchhHHHhhhhhhhhhhcchhhhhhhhcceeEEEEecchh
Q 002135 330 SIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHA 409 (961)
Q Consensus 330 ~i~v~~~~Gd~~~~~r~~l~~~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~i~~VVIDEaH~ 409 (961)
++.++.++|+... ...++|+|+||++|..++.. ....+.++ ++|||||||+
T Consensus 108 ~~~v~~l~G~~~~------~~~~~IlV~Tpe~L~~~l~~----~~~~l~~l-------------------~lvViDEaH~ 158 (997)
T 4a4z_A 108 DVNIGLITGDVQI------NPDANCLIMTTEILRSMLYR----GADLIRDV-------------------EFVIFDEVHY 158 (997)
T ss_dssp -CCEEEECSSCEE------CTTSSEEEEEHHHHHHHHHH----TCSGGGGE-------------------EEEEECCTTC
T ss_pred CCeEEEEeCCCcc------CCCCCEEEECHHHHHHHHHh----CchhhcCC-------------------CEEEEECccc
Confidence 3678889998753 23589999999999766521 11223444 9999999999
Q ss_pred hhc-ccchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCChHHHHHHHccc--CCeEEEecCCCccceeEEEEeCCCccc
Q 002135 410 YKG-AFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANL--STLELIQNDGSPCAQKLFVLWNPTSCL 486 (961)
Q Consensus 410 ~~~-~fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~~e~~~~L~~~--~~~~~i~~~g~p~~~~~~~l~~p~~~~ 486 (961)
+.+ +||..+..++..+ ..++++|++|||++|+.++..++... ....++...+++.+....+........
T Consensus 159 l~d~~~g~~~e~ii~~l--------~~~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~ 230 (997)
T 4a4z_A 159 VNDQDRGVVWEEVIIML--------PQHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIP 230 (997)
T ss_dssp CCTTCTTCCHHHHHHHS--------CTTCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEE
T ss_pred ccccchHHHHHHHHHhc--------ccCCCEEEEcCCCCChHHHHHHHhcccCCceEEEecCCCCccceEEEecCCcchh
Confidence 887 4888877766543 35689999999999999888887532 457788888888777655443221111
Q ss_pred cccccccccccc-------------------------------h-----hh-----------------------------
Q 002135 487 RSVLNKSQTDMD-------------------------------D-----TR----------------------------- 501 (961)
Q Consensus 487 ~~~~~~~~~~~~-------------------------------~-----~~----------------------------- 501 (961)
............ . ..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 310 (997)
T 4a4z_A 231 VINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNK 310 (997)
T ss_dssp EECTTCCBCHHHHHHHHHHHC-----------------------------------------------------------
T ss_pred cccchhhhhHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 000000000000 0 00
Q ss_pred -hcccCCCCcHHHHHHHHHHHHHC-CCcEEEEecChHHHHHHHHHHHHH--------------HH---------------
Q 002135 502 -NAANKTSSPISEVSYLFAEMVQH-GLRCIAFCRSRKLCELVLSYTREI--------------LE--------------- 550 (961)
Q Consensus 502 -~~~~~~~~~~~~~~~ll~~l~~~-g~k~IVF~~sr~~ae~l~~~L~~~--------------l~--------------- 550 (961)
...............++..+... ..++||||++++.|+.++..|... +.
T Consensus 311 ~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~ 390 (997)
T 4a4z_A 311 RKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQ 390 (997)
T ss_dssp ------CCCCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHH
T ss_pred cccccccccchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchh
Confidence 00000001112233444444443 369999999999999998876430 00
Q ss_pred --hhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEeccccccccccCCccEEEEeCCCC---------CHhhHHH
Q 002135 551 --ETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPG---------SIASLWQ 619 (961)
Q Consensus 551 --~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~aLe~GIDIp~vd~VI~~~~P~---------s~~sy~Q 619 (961)
.....+..++..|||++++.+|..+++.|++|.++|||||+++++|||+|+ ..||+++.|. |..+|+|
T Consensus 391 ~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Q 469 (997)
T 4a4z_A 391 ILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQ 469 (997)
T ss_dssp HHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHH
T ss_pred HHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhH
Confidence 000112336899999999999999999999999999999999999999999 5566665555 9999999
Q ss_pred HhccCCCCC--CCceEEEEeeCCcchhH
Q 002135 620 QAGRSGRRE--RPSLAVYVAFEGPLDQY 645 (961)
Q Consensus 620 R~GRAGR~g--~~g~~i~l~~~~~~d~~ 645 (961)
|+|||||.| ..|.+++++..++.+..
T Consensus 470 r~GRAGR~G~~~~G~vi~l~~~~~~~~~ 497 (997)
T 4a4z_A 470 MAGRAGRRGLDSTGTVIVMAYNSPLSIA 497 (997)
T ss_dssp HHGGGCCTTTCSSEEEEEECCSSCCCHH
T ss_pred HhcccccCCCCcceEEEEecCCCcchHH
Confidence 999999998 45677766644444433
No 30
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=8.7e-39 Score=399.26 Aligned_cols=366 Identities=15% Similarity=0.139 Sum_probs=204.9
Q ss_pred hCCCCCCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcCC---CCeEEEEcccHHHHHHHHHHHHHhHhh
Q 002135 250 STGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDL---SSSALYMFPTKALAQDQLRALLAMTKA 326 (961)
Q Consensus 250 ~~g~~~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~~---~~~aLvl~PtraLa~qq~~~l~~l~~~ 326 (961)
.+|+..|+++|.++++.++.|+++|+++|||||||++|++|++..+...+ +.++|||+||++|+.|+.+.+++++..
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~ 322 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhccc
Confidence 35788999999999999999999999999999999999999999988765 788999999999999999999999876
Q ss_pred CCCCccEEEEcCCCcHHH-HHHHhcCCcEEEeChhHHHHhhcCCCchhHHHhhhhhhhhhhcchhhhhhhhcceeEEEEe
Q 002135 327 FDASIDIGVYDGDTTQKD-RMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVID 405 (961)
Q Consensus 327 ~~~~i~v~~~~Gd~~~~~-r~~l~~~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~i~~VVID 405 (961)
.+ +.+..++|+..... ...+..+++|+|+||++|...+..... ..+.++ ++||||
T Consensus 323 ~~--~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~---~~~~~~-------------------~~iViD 378 (797)
T 4a2q_A 323 QG--YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTL---TSLSIF-------------------TLMIFD 378 (797)
T ss_dssp GT--CCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSC---CCGGGC-------------------SEEEET
T ss_pred CC--ceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccc---cccccC-------------------CEEEEE
Confidence 54 77888888875543 445667899999999999776521100 123344 999999
Q ss_pred cchhhhcccchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCCh--------HHHHHHHcccCCeEEEecCCC-------
Q 002135 406 EAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANP--------REHCMELANLSTLELIQNDGS------- 470 (961)
Q Consensus 406 EaH~~~~~fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~--------~e~~~~L~~~~~~~~i~~~g~------- 470 (961)
|||++.+. + .+..++.++...........+++|++|||+... .+.+..+....+...+.....
T Consensus 379 EaH~~~~~-~-~~~~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~ 456 (797)
T 4a2q_A 379 ECHNTTGN-H-PYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQR 456 (797)
T ss_dssp TGGGCSTT-S-HHHHHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHH
T ss_pred CccccCCC-c-cHHHHHHHHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHH
Confidence 99998763 2 255555444433211124568999999999532 122332221111111111110
Q ss_pred --ccceeEEEEeCCCcccc--c------------------------cccccccc-------------------c-c----
Q 002135 471 --PCAQKLFVLWNPTSCLR--S------------------------VLNKSQTD-------------------M-D---- 498 (961)
Q Consensus 471 --p~~~~~~~l~~p~~~~~--~------------------------~~~~~~~~-------------------~-~---- 498 (961)
...........+..... . ........ . .
T Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (797)
T 4a2q_A 457 FMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEES 536 (797)
T ss_dssp HSCCCCCEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHH
T ss_pred hcCCCceEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhh
Confidence 11111111111100000 0 00000000 0 0
Q ss_pred ------------------------------------h------------------------------hhhcccCCCCcHH
Q 002135 499 ------------------------------------D------------------------------TRNAANKTSSPIS 512 (961)
Q Consensus 499 ------------------------------------~------------------------------~~~~~~~~~~~~~ 512 (961)
. ..........+..
T Consensus 537 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~ 616 (797)
T 4a2q_A 537 RICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLE 616 (797)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHH
Confidence 0 0000000123334
Q ss_pred HHHHHHHHHH--HCCCcEEEEecChHHHHHHHHHHHHHHH--hhC--CcccccEEEEcCCCCHHHHHHHHHHHhC-CCce
Q 002135 513 EVSYLFAEMV--QHGLRCIAFCRSRKLCELVLSYTREILE--ETA--PHLVDSICVYRAGYVAEDRRRIERDFFG-GKLC 585 (961)
Q Consensus 513 ~~~~ll~~l~--~~g~k~IVF~~sr~~ae~l~~~L~~~l~--~~~--~~l~~~v~~~hggls~~eR~~ie~~f~~-G~~~ 585 (961)
.+..++.... ..+.++||||++++.++.++..|++... ... ...+.....+||++++.+|.+++++|++ |+++
T Consensus 617 ~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~ 696 (797)
T 4a2q_A 617 ELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR 696 (797)
T ss_dssp HHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCS
T ss_pred HHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCce
Confidence 4444444432 3458999999999999999998865210 000 0123355678999999999999999999 9999
Q ss_pred EEEeccccccccccCCccEEEEeCCCCCHhhHHHHhccCCCCCCCceEEEEeeCCcch
Q 002135 586 GVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLD 643 (961)
Q Consensus 586 vLVAT~aLe~GIDIp~vd~VI~~~~P~s~~sy~QR~GRAGR~g~~g~~i~l~~~~~~d 643 (961)
|||||+++++|||+|++++||+||+|+|..+|+||+|| ||. ++|.+++++..+..+
T Consensus 697 vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 697 LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (797)
T ss_dssp EEEEECC-------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHHH
T ss_pred EEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHH
Confidence 99999999999999999999999999999999999999 999 889998887655443
No 31
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=8.4e-38 Score=365.28 Aligned_cols=350 Identities=18% Similarity=0.231 Sum_probs=244.3
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHHHHHHHHHHHHHhHhhCCCCccEE
Q 002135 255 KLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIG 334 (961)
Q Consensus 255 ~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~PtraLa~qq~~~l~~l~~~~~~~i~v~ 334 (961)
.|++||.++++.++.+ ++++++|||+|||++++++++..+. .++.++|||+|+++|+.|+.+++.++... ....+.
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~-~~~~~~liv~P~~~L~~q~~~~~~~~~~~--~~~~v~ 84 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLT-KYGGKVLMLAPTKPLVLQHAESFRRLFNL--PPEKIV 84 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHH-HSCSCEEEECSSHHHHHHHHHHHHHHBCS--CGGGEE
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHh-cCCCeEEEEECCHHHHHHHHHHHHHHhCc--chhheE
Confidence 6999999999999999 9999999999999999999998876 45779999999999999999999987531 224789
Q ss_pred EEcCCCcHHHHHHHhcCCcEEEeChhHHHHhhcCCCchhHHHhhhhhhhhhhcchhhhhhhhcceeEEEEecchhhhccc
Q 002135 335 VYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAF 414 (961)
Q Consensus 335 ~~~Gd~~~~~r~~l~~~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~i~~VVIDEaH~~~~~f 414 (961)
.++|+....++.....+++|+|+||++|...+.... ..+.+ +++||+||||++.+.
T Consensus 85 ~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~----~~~~~-------------------~~~vIiDEaH~~~~~- 140 (494)
T 1wp9_A 85 ALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGR----ISLED-------------------VSLIVFDEAHRAVGN- 140 (494)
T ss_dssp EECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTS----CCTTS-------------------CSEEEEETGGGCSTT-
T ss_pred EeeCCcchhhhhhhccCCCEEEecHHHHHHHHhcCC----cchhh-------------------ceEEEEECCcccCCC-
Confidence 999998887776666789999999999976542110 11223 399999999998753
Q ss_pred chHHHHHHHHHHHHhhcccCCCCcEEEeccCCCChHHHHHHHcccCCeE--EEecCCCcc--------ceeEEEEeCCCc
Q 002135 415 GCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLE--LIQNDGSPC--------AQKLFVLWNPTS 484 (961)
Q Consensus 415 g~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~~e~~~~L~~~~~~~--~i~~~g~p~--------~~~~~~l~~p~~ 484 (961)
.....+++.+... ...++++++|||+.+..+.+..+....... .+.....+. .........|..
T Consensus 141 -~~~~~~~~~~~~~-----~~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (494)
T 1wp9_A 141 -YAYVFIAREYKRQ-----AKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEI 214 (494)
T ss_dssp -CHHHHHHHHHHHH-----CSSCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHH
T ss_pred -CcHHHHHHHHHhc-----CCCCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHH
Confidence 1233444444432 346789999999986544444443221111 111111110 000000000100
Q ss_pred cccc-------------------cc-c----ccc------------------c-------------------------cc
Q 002135 485 CLRS-------------------VL-N----KSQ------------------T-------------------------DM 497 (961)
Q Consensus 485 ~~~~-------------------~~-~----~~~------------------~-------------------------~~ 497 (961)
.... .. . ... . ..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (494)
T 1wp9_A 215 YKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGL 294 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcH
Confidence 0000 00 0 000 0 00
Q ss_pred chhh-------------------------------------hcccCCCCcHHHHHHHHHHHH--HCCCcEEEEecChHHH
Q 002135 498 DDTR-------------------------------------NAANKTSSPISEVSYLFAEMV--QHGLRCIAFCRSRKLC 538 (961)
Q Consensus 498 ~~~~-------------------------------------~~~~~~~~~~~~~~~ll~~l~--~~g~k~IVF~~sr~~a 538 (961)
.... ........+...+..++.... ..+.++||||++++.+
T Consensus 295 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~ 374 (494)
T 1wp9_A 295 SALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETA 374 (494)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHH
T ss_pred HHHHHHHHHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHH
Confidence 0000 000022334455556665554 3578999999999999
Q ss_pred HHHHHHHHHHHHhhCCcccccEEEEcC--------CCCHHHHHHHHHHHhCCCceEEEeccccccccccCCccEEEEeCC
Q 002135 539 ELVLSYTREILEETAPHLVDSICVYRA--------GYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGF 610 (961)
Q Consensus 539 e~l~~~L~~~l~~~~~~l~~~v~~~hg--------gls~~eR~~ie~~f~~G~~~vLVAT~aLe~GIDIp~vd~VI~~~~ 610 (961)
+.+++.|++ .+..+..+|| +++..+|.+++++|++|+.++||||+++++|||+|++++||+++.
T Consensus 375 ~~l~~~L~~--------~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~ 446 (494)
T 1wp9_A 375 KKIVNELVK--------DGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEP 446 (494)
T ss_dssp HHHHHHHHH--------TTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSC
T ss_pred HHHHHHHHH--------cCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCC
Confidence 999998876 2456889999 999999999999999999999999999999999999999999999
Q ss_pred CCCHhhHHHHhccCCCCCCCceEEEEeeCCcchhHHH
Q 002135 611 PGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFM 647 (961)
Q Consensus 611 P~s~~sy~QR~GRAGR~g~~g~~i~l~~~~~~d~~~~ 647 (961)
|+|...|+||+||+||.|+ |.++.++..+..|..+.
T Consensus 447 ~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~ee~~~ 482 (494)
T 1wp9_A 447 VPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRDEAYY 482 (494)
T ss_dssp CHHHHHHHHHHTTSCSCCC-SEEEEEEETTSHHHHHH
T ss_pred CCCHHHHHHHHhhccCCCC-ceEEEEEecCCHHHHHH
Confidence 9999999999999999988 99988887776655443
No 32
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=4.4e-39 Score=396.74 Aligned_cols=358 Identities=18% Similarity=0.185 Sum_probs=221.5
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcCCC----CeEEEEcccHHHHHHH-HHHHHHhHhhCCC
Q 002135 255 KLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLS----SSALYMFPTKALAQDQ-LRALLAMTKAFDA 329 (961)
Q Consensus 255 ~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~----~~aLvl~PtraLa~qq-~~~l~~l~~~~~~ 329 (961)
+|+++|.++++.+++|+++|+++|||||||++|++|++..+...+. .++|||+|+++|+.|+ .+++++++..
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~--- 83 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK--- 83 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT---
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc---
Confidence 7999999999999999999999999999999999999988765433 7899999999999999 9999998764
Q ss_pred CccEEEEcCCCcHHH-HHHHhcCCcEEEeChhHHHHhhcCCC--chhHHHhhhhhhhhhhcchhhhhhhhcceeEEEEec
Q 002135 330 SIDIGVYDGDTTQKD-RMWLRDNARLLITNPDMLHMSILPYH--GQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDE 406 (961)
Q Consensus 330 ~i~v~~~~Gd~~~~~-r~~l~~~~~IlItTPe~L~~~lL~~~--~~~~~~L~~l~~~~~~~~~~~~~~~~~~i~~VVIDE 406 (961)
.+.+..+.|+..... ...+...++|+|+||++|...+.... ......+.+ +++|||||
T Consensus 84 ~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~-------------------~~lvViDE 144 (699)
T 4gl2_A 84 WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSD-------------------FSLIIIDE 144 (699)
T ss_dssp TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGG-------------------CSEEEEES
T ss_pred CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceeccc-------------------CcEEEEEC
Confidence 377888888865432 24455789999999999987653211 111112233 49999999
Q ss_pred chhhhcc--cchHHHHHHHH-HHHHh----hcccCCCCcEEEeccCCCCh--------HHHHHHHcccCCe-EEEecCC-
Q 002135 407 AHAYKGA--FGCHTALILRR-LCRLC----SHVYGSDPSFVFSTATSANP--------REHCMELANLSTL-ELIQNDG- 469 (961)
Q Consensus 407 aH~~~~~--fg~~~~~ilrr-L~~~~----~~~~~~~~q~I~lSATl~n~--------~e~~~~L~~~~~~-~~i~~~g- 469 (961)
||++... +...+...+.. ++... .....+.+++|++|||+.+. .+.+..+....+. .+.....
T Consensus 145 aH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~ 224 (699)
T 4gl2_A 145 CHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKEN 224 (699)
T ss_dssp GGGCBTTBSSCSHHHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTT
T ss_pred ccccCccchHHHHHHHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCc
Confidence 9998541 22222222211 11110 00011567999999999862 2333333221111 1100000
Q ss_pred -------CccceeEEEEeCCCccccc-------------c--c-ccccccc-----------------------------
Q 002135 470 -------SPCAQKLFVLWNPTSCLRS-------------V--L-NKSQTDM----------------------------- 497 (961)
Q Consensus 470 -------~p~~~~~~~l~~p~~~~~~-------------~--~-~~~~~~~----------------------------- 497 (961)
.+.+........+...... . . .......
T Consensus 225 ~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 304 (699)
T 4gl2_A 225 LDQLKNQIQEPCKKFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHL 304 (699)
T ss_dssp HHHHHHHSCCCEEEEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHH
T ss_pred hHHHhhhcCCCceEEEEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 0111222222211100000 0 0 0000000
Q ss_pred -----------------------------------------------ch------------------hhhcccCCCCcHH
Q 002135 498 -----------------------------------------------DD------------------TRNAANKTSSPIS 512 (961)
Q Consensus 498 -----------------------------------------------~~------------------~~~~~~~~~~~~~ 512 (961)
.. ..........+..
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~ 384 (699)
T 4gl2_A 305 RKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLT 384 (699)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHH
Confidence 00 0000000112222
Q ss_pred HHHHHHHHHHHC---CCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCC--------CCHHHHHHHHHHHhC
Q 002135 513 EVSYLFAEMVQH---GLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAG--------YVAEDRRRIERDFFG 581 (961)
Q Consensus 513 ~~~~ll~~l~~~---g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hgg--------ls~~eR~~ie~~f~~ 581 (961)
.+..++...... +.++||||++++.++.+++.|++. ......+..+..+||+ |++.+|.+++++|++
T Consensus 385 ~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~--~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~ 462 (699)
T 4gl2_A 385 KLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITEN--EKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRT 462 (699)
T ss_dssp CSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSS--CSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhC--ccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhc
Confidence 333444432221 689999999999999999988652 0011124578899999 999999999999999
Q ss_pred CCceEEEeccccccccccCCccEEEEeCCCCCHhhHHHHhccCCCCCCCceEEEEee
Q 002135 582 GKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAF 638 (961)
Q Consensus 582 G~~~vLVAT~aLe~GIDIp~vd~VI~~~~P~s~~sy~QR~GRAGR~g~~g~~i~l~~ 638 (961)
|+++|||||+++++|||+|++++||+||+|+|..+|+||+|||||.| +.++++..
T Consensus 463 g~~~VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~ 517 (699)
T 4gl2_A 463 GKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE--STYVLVAH 517 (699)
T ss_dssp ---CCSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEE
T ss_pred CCCcEEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEe
Confidence 99999999999999999999999999999999999999999987765 34444443
No 33
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=1.2e-36 Score=387.54 Aligned_cols=352 Identities=16% Similarity=0.152 Sum_probs=244.6
Q ss_pred HHHHHHH-hCCCCCCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHHHHHHHHHHHH
Q 002135 243 NTKSALK-STGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALL 321 (961)
Q Consensus 243 ~l~~~L~-~~g~~~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~PtraLa~qq~~~l~ 321 (961)
.+.+.++ .+|| +|+++|.+|++.+++|+|++++||||||||++|++|++..+. .+.++|||+||++|+.|+.++++
T Consensus 66 ~~~~~~~~~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~--~~~~~Lil~PtreLa~Q~~~~l~ 142 (1104)
T 4ddu_A 66 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR--KGKKSALVFPTVTLVKQTLERLQ 142 (1104)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT--TTCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh--cCCeEEEEechHHHHHHHHHHHH
Confidence 3444554 4788 699999999999999999999999999999999888888773 47799999999999999999999
Q ss_pred HhHhhCCCCccEEEEcCCCcHH----HHHHHhcC-CcEEEeChhHHHHhhcCCCchhHHHhhhhhhhhhhcchhhhhhhh
Q 002135 322 AMTKAFDASIDIGVYDGDTTQK----DRMWLRDN-ARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIF 396 (961)
Q Consensus 322 ~l~~~~~~~i~v~~~~Gd~~~~----~r~~l~~~-~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~~~~~~~~~~~~~ 396 (961)
+++ ..++.++.++|+.... +...+..+ ++|+|+||++|.+.+. ...+.++
T Consensus 143 ~l~---~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~------~l~~~~l---------------- 197 (1104)
T 4ddu_A 143 KLA---DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNRE------KLSQKRF---------------- 197 (1104)
T ss_dssp TTS---CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHH------HHHTSCC----------------
T ss_pred Hhh---CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHH------hhcccCc----------------
Confidence 965 3457889999887653 33455555 9999999999976541 1223344
Q ss_pred cceeEEEEecchhhhc------------ccchH-HHHHHHHHHH--Hhhccc-CCCCcEEEeccCC-CChH--HHHHHHc
Q 002135 397 LFIRFVVIDEAHAYKG------------AFGCH-TALILRRLCR--LCSHVY-GSDPSFVFSTATS-ANPR--EHCMELA 457 (961)
Q Consensus 397 ~~i~~VVIDEaH~~~~------------~fg~~-~~~ilrrL~~--~~~~~~-~~~~q~I~lSATl-~n~~--e~~~~L~ 457 (961)
++|||||||++.. +|..+ +..+++.+.. ...... ..+.|++++|||+ +... .....+.
T Consensus 198 ---~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l 274 (1104)
T 4ddu_A 198 ---DFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLL 274 (1104)
T ss_dssp ---SEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHT
T ss_pred ---CEEEEeCCCccccccccchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcce
Confidence 9999999998753 23333 4444444430 000100 1467999999995 3221 2233332
Q ss_pred ccCCeEEEecCCCccceeEEEEeCCCccccccccccccccchhhhcccCCCCcHHHHHHHHHHHHHCCCcEEEEecChHH
Q 002135 458 NLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKL 537 (961)
Q Consensus 458 ~~~~~~~i~~~g~p~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~k~IVF~~sr~~ 537 (961)
+. .+......+......+. ..++...+..++.. .+.++||||++++.
T Consensus 275 ~i---~v~~~~~~~~~i~~~~~---------------------------~~~k~~~L~~ll~~---~~~~~LVF~~s~~~ 321 (1104)
T 4ddu_A 275 NF---TVGRLVSVARNITHVRI---------------------------SSRSKEKLVELLEI---FRDGILIFAQTEEE 321 (1104)
T ss_dssp CC---CCCBCCCCCCCEEEEEE---------------------------SCCCHHHHHHHHHH---HCSSEEEEESSSHH
T ss_pred eE---EeccCCCCcCCceeEEE---------------------------ecCHHHHHHHHHHh---cCCCEEEEECcHHH
Confidence 21 11111111111111111 11334445555544 45799999999999
Q ss_pred HHHHHHHHHHHHHhhCCcccccEE-EEcCCCCHHHHHHHHHHHhCCCceEEEe----ccccccccccCC-ccEEEEeCCC
Q 002135 538 CELVLSYTREILEETAPHLVDSIC-VYRAGYVAEDRRRIERDFFGGKLCGVAA----TNALELGIDVGH-IDVTLHLGFP 611 (961)
Q Consensus 538 ae~l~~~L~~~l~~~~~~l~~~v~-~~hggls~~eR~~ie~~f~~G~~~vLVA----T~aLe~GIDIp~-vd~VI~~~~P 611 (961)
|+.++..|+. .+..+. .+|| +|++ +++|++|+++|||| |+++++|||+|+ |++|||||+|
T Consensus 322 a~~l~~~L~~--------~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P 387 (1104)
T 4ddu_A 322 GKELYEYLKR--------FKFNVGETWSE-----FEKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTP 387 (1104)
T ss_dssp HHHHHHHHHH--------TTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCC
T ss_pred HHHHHHHHHh--------CCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCC
Confidence 9999998876 345677 8898 3666 99999999999999 999999999999 9999999999
Q ss_pred C------------------------------------------------------------------------CHhhHHH
Q 002135 612 G------------------------------------------------------------------------SIASLWQ 619 (961)
Q Consensus 612 ~------------------------------------------------------------------------s~~sy~Q 619 (961)
. ++.+|+|
T Consensus 388 ~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYih 467 (1104)
T 4ddu_A 388 SMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQ 467 (1104)
T ss_dssp EEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEETTTTEEEEECHHHHHH
T ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceEEecCCeeEEEecChhhhhc
Confidence 8 7889999
Q ss_pred HhccCCCCCC----CceEEEEeeCCcchhHHHhchHHhhc--CCCcccccCCCCHHHHHHHHH
Q 002135 620 QAGRSGRRER----PSLAVYVAFEGPLDQYFMKYPEKLFK--SPIECCHIDAQNHKVLEQHLV 676 (961)
Q Consensus 620 R~GRAGR~g~----~g~~i~l~~~~~~d~~~~~~~e~l~~--~~ie~~~~~~~n~~vl~~~l~ 676 (961)
|+|||||.|. .|.++++. .|...++...+.+. ..++-..++..|.+.+...+-
T Consensus 468 r~GRtgR~~~gg~~~Glsi~~~----~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 526 (1104)
T 4ddu_A 468 ASGRSSRILNGVLVKGVSVIFE----EDEEIFESLKTRLLLIAEEEIIEEAEANWKELVHEVE 526 (1104)
T ss_dssp HHHTTCCEETTEECCEEEEEEC----CCHHHHHHHHHHHHHHTCCCEEEGGGCCHHHHHHHHH
T ss_pred ccCchhcccCCCcccceEEEEE----ecHHHHHHHHHHHhhhcccccccccccCHHHHHHHHh
Confidence 9999999653 45666555 23334444443333 455555666666666655553
No 34
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=7e-38 Score=395.74 Aligned_cols=366 Identities=15% Similarity=0.137 Sum_probs=203.4
Q ss_pred hCCCCCCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcCC---CCeEEEEcccHHHHHHHHHHHHHhHhh
Q 002135 250 STGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDL---SSSALYMFPTKALAQDQLRALLAMTKA 326 (961)
Q Consensus 250 ~~g~~~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~~---~~~aLvl~PtraLa~qq~~~l~~l~~~ 326 (961)
-.|+..|+++|.++++.+++|+++|+++|||||||++|++|++..+...+ +.++|||+||++|+.|+.+++++++..
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 322 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 35678999999999999999999999999999999999999999887755 778999999999999999999999875
Q ss_pred CCCCccEEEEcCCCcHHH-HHHHhcCCcEEEeChhHHHHhhcCCCchhHHHhhhhhhhhhhcchhhhhhhhcceeEEEEe
Q 002135 327 FDASIDIGVYDGDTTQKD-RMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVID 405 (961)
Q Consensus 327 ~~~~i~v~~~~Gd~~~~~-r~~l~~~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~i~~VVID 405 (961)
. ++.+..++|+..... ...+..+++|+|+||++|...+..... ..+.++ ++||||
T Consensus 323 ~--~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~---~~l~~~-------------------~liViD 378 (936)
T 4a2w_A 323 Q--GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTL---TSLSIF-------------------TLMIFD 378 (936)
T ss_dssp T--TCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSC---CCGGGC-------------------SEEEEE
T ss_pred c--CceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCcc---ccccCC-------------------CEEEEE
Confidence 5 377888888875443 344556799999999999876521110 123344 999999
Q ss_pred cchhhhcccchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCCh--------HHHHHHHcccCCeEEEecCCC-------
Q 002135 406 EAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANP--------REHCMELANLSTLELIQNDGS------- 470 (961)
Q Consensus 406 EaH~~~~~fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~--------~e~~~~L~~~~~~~~i~~~g~------- 470 (961)
|||++.+. +. +..++.++...........++++++|||+... .+.+..+....+...+.....
T Consensus 379 EaH~~~~~-~~-~~~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~ 456 (936)
T 4a2w_A 379 ECHNTTGN-HP-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQR 456 (936)
T ss_dssp TGGGCSTT-CH-HHHHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHH
T ss_pred CccccCCC-cc-HHHHHHHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHH
Confidence 99998763 22 55555444433211124568999999999431 122222221111111111110
Q ss_pred --ccceeEEEEeCCCccccc--------------------------cccccccc-------------------cc-----
Q 002135 471 --PCAQKLFVLWNPTSCLRS--------------------------VLNKSQTD-------------------MD----- 498 (961)
Q Consensus 471 --p~~~~~~~l~~p~~~~~~--------------------------~~~~~~~~-------------------~~----- 498 (961)
+..........+...... ........ ..
T Consensus 457 ~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~ 536 (936)
T 4a2w_A 457 FMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEES 536 (936)
T ss_dssp HSCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHH
T ss_pred hccCCcceEEecccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhh
Confidence 111111111111000000 00000000 00
Q ss_pred ------------------------------------hh------------------------------hhcccCCCCcHH
Q 002135 499 ------------------------------------DT------------------------------RNAANKTSSPIS 512 (961)
Q Consensus 499 ------------------------------------~~------------------------------~~~~~~~~~~~~ 512 (961)
.. .........+..
T Consensus 537 ~~~~~l~~~~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~ 616 (936)
T 4a2w_A 537 RICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLE 616 (936)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 00 000000122333
Q ss_pred HHHHHHHHHH--HCCCcEEEEecChHHHHHHHHHHHHHHH--hhC--CcccccEEEEcCCCCHHHHHHHHHHHhC-CCce
Q 002135 513 EVSYLFAEMV--QHGLRCIAFCRSRKLCELVLSYTREILE--ETA--PHLVDSICVYRAGYVAEDRRRIERDFFG-GKLC 585 (961)
Q Consensus 513 ~~~~ll~~l~--~~g~k~IVF~~sr~~ae~l~~~L~~~l~--~~~--~~l~~~v~~~hggls~~eR~~ie~~f~~-G~~~ 585 (961)
.+..++.... ..+.++||||++++.++.++..|++... ... .-.+.....+||++++.+|.+++++|++ |+++
T Consensus 617 ~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~ 696 (936)
T 4a2w_A 617 ELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR 696 (936)
T ss_dssp HHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCS
T ss_pred HHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCee
Confidence 3333443322 2357999999999999999998876210 000 0113345677999999999999999999 9999
Q ss_pred EEEeccccccccccCCccEEEEeCCCCCHhhHHHHhccCCCCCCCceEEEEeeCCcch
Q 002135 586 GVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLD 643 (961)
Q Consensus 586 vLVAT~aLe~GIDIp~vd~VI~~~~P~s~~sy~QR~GRAGR~g~~g~~i~l~~~~~~d 643 (961)
|||||+++++|||+|++++||+||+|+|..+|+||+|| ||. ++|.+++++.....+
T Consensus 697 VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 697 LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (936)
T ss_dssp EEEEECC------CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHHH
T ss_pred EEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHH
Confidence 99999999999999999999999999999999999999 999 788888877554443
No 35
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=2.4e-37 Score=394.19 Aligned_cols=354 Identities=17% Similarity=0.192 Sum_probs=246.7
Q ss_pred HHHHHHH-hCCCCCCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHHHHHHHHHHHH
Q 002135 243 NTKSALK-STGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALL 321 (961)
Q Consensus 243 ~l~~~L~-~~g~~~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~PtraLa~qq~~~l~ 321 (961)
.+.+.+. .+||. | ++|.++|+.+++|+|++++||||||||+ |.+|++..+.. .+.++|||+||++|+.|+.+.++
T Consensus 45 ~~~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~-~~~~~lil~PtreLa~Q~~~~l~ 120 (1054)
T 1gku_B 45 EFVEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL-KGKRCYVIFPTSLLVIQAAETIR 120 (1054)
T ss_dssp HHHHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT-TSCCEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh-cCCeEEEEeccHHHHHHHHHHHH
Confidence 3444454 58998 9 9999999999999999999999999998 99999988765 46799999999999999999999
Q ss_pred HhHhhCCCC--ccEEEEcCCCcHHHH----HHHhcCCcEEEeChhHHHHhhcCCCchhHHHhhhhhhhhhhcchhhhhhh
Q 002135 322 AMTKAFDAS--IDIGVYDGDTTQKDR----MWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLI 395 (961)
Q Consensus 322 ~l~~~~~~~--i~v~~~~Gd~~~~~r----~~l~~~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~~~~~~~~~~~~ 395 (961)
+++...+.. ..++.+.|+.....+ ..+.. ++|+|+||++|.+.+. + |+++
T Consensus 121 ~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~----~----L~~l--------------- 176 (1054)
T 1gku_B 121 KYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYR----E----LGHF--------------- 176 (1054)
T ss_dssp HHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCST----T----SCCC---------------
T ss_pred HHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHH----H----hccC---------------
Confidence 998765421 178888888766543 33444 9999999999987541 1 4455
Q ss_pred hcceeEEEEecchhhhcccchHHHHHHHHHHHHh---hcccCCCCcEEEeccCCCChHHHHHHHcccCCeEEEecCCCc-
Q 002135 396 FLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLC---SHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSP- 471 (961)
Q Consensus 396 ~~~i~~VVIDEaH~~~~~fg~~~~~ilrrL~~~~---~~~~~~~~q~I~lSATl~n~~e~~~~L~~~~~~~~i~~~g~p- 471 (961)
++|||||||++.+ ||.++..+++++.... ........|++++|||++++......+.+.. ..+......
T Consensus 177 ----~~lViDEah~~l~-~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~--~~i~v~~~~~ 249 (1054)
T 1gku_B 177 ----DFIFVDDVDAILK-ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQL--LNFDIGSSRI 249 (1054)
T ss_dssp ----SEEEESCHHHHHT-STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSCCCTTHHHHHHH--HCCCCSCCEE
T ss_pred ----CEEEEeChhhhhh-ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCchhHHHHHhhcc--eEEEccCccc
Confidence 9999999999998 8999888887663110 0111235788999999987642222222210 001111110
Q ss_pred --cceeEEEEeCCCccccccccccccccchhhhcccCCCCcHHHHHHHHHHHHHCCCcEEEEecChHHHHHHHHHHHHHH
Q 002135 472 --CAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREIL 549 (961)
Q Consensus 472 --~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~k~IVF~~sr~~ae~l~~~L~~~l 549 (961)
......+. ...+...+..++. ..+.++||||++++.|+.++..|++
T Consensus 250 ~~~~i~~~~~---------------------------~~~k~~~L~~ll~---~~~~~~LVF~~t~~~a~~l~~~L~~-- 297 (1054)
T 1gku_B 250 TVRNVEDVAV---------------------------NDESISTLSSILE---KLGTGGIIYARTGEEAEEIYESLKN-- 297 (1054)
T ss_dssp CCCCEEEEEE---------------------------SCCCTTTTHHHHT---TSCSCEEEEESSHHHHHHHHHTTTT--
T ss_pred CcCCceEEEe---------------------------chhHHHHHHHHHh---hcCCCEEEEEcCHHHHHHHHHHHhh--
Confidence 01111111 0112222233332 2367999999999999999887754
Q ss_pred HhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEe----ccccccccccCCc-cEEEEeCCC-------------
Q 002135 550 EETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAA----TNALELGIDVGHI-DVTLHLGFP------------- 611 (961)
Q Consensus 550 ~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVA----T~aLe~GIDIp~v-d~VI~~~~P------------- 611 (961)
. ..+..+||++ .++++.|++|+++|||| |+++++|||+|+| ++||++|+|
T Consensus 298 ------~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~ 365 (1054)
T 1gku_B 298 ------K-FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLS 365 (1054)
T ss_dssp ------S-SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSC
T ss_pred ------c-cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccCh
Confidence 1 4689999998 47889999999999999 9999999999995 999999999
Q ss_pred ----------------------------------------------------------CCHhhHHHHhccCCCCCCCce-
Q 002135 612 ----------------------------------------------------------GSIASLWQQAGRSGRRERPSL- 632 (961)
Q Consensus 612 ----------------------------------------------------------~s~~sy~QR~GRAGR~g~~g~- 632 (961)
.|..+|+||+|||||.|..|.
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~ 445 (1054)
T 1gku_B 366 PQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLT 445 (1054)
T ss_dssp HHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEEC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCc
Confidence 799999999999999866653
Q ss_pred -EEEEeeCCcchhHHHhchHHhhcC-CCcccccCCCCHHHHHHHHHH
Q 002135 633 -AVYVAFEGPLDQYFMKYPEKLFKS-PIECCHIDAQNHKVLEQHLVC 677 (961)
Q Consensus 633 -~i~l~~~~~~d~~~~~~~e~l~~~-~ie~~~~~~~n~~vl~~~l~~ 677 (961)
++.++..+ |..+.+..++.++. .++...++..+.+.+...+..
T Consensus 446 ~g~~~~~~~--d~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~i~~ 490 (1054)
T 1gku_B 446 KGASFLLED--DSELLSAFIERAKLYDIEFKSIDEVDFEKLSRELDE 490 (1054)
T ss_dssp CEEEEEECS--CHHHHHHHHHHHHTTSSCCCBCSCCCHHHHHHHHHH
T ss_pred eEEEEEEec--CHHHHHHHHHHHhhccCccccCCcCCHHHHHHhhcc
Confidence 55555544 33344444444442 255556666777666665543
No 36
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.5e-37 Score=378.26 Aligned_cols=323 Identities=20% Similarity=0.252 Sum_probs=232.2
Q ss_pred HHHHHHHHhCCCCCCcHHHHHHHHHHhCC------CcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHHHHHH
Q 002135 242 DNTKSALKSTGISKLYSHQAESIMASLAG------KNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQD 315 (961)
Q Consensus 242 ~~l~~~L~~~g~~~l~~~Q~~ai~~il~G------~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~PtraLa~q 315 (961)
+.+.+.++.++| +|+++|.+|++.++++ .++++++|||||||++|++|++..+.. +.+++|++||++||.|
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~--g~qvlvlaPtr~La~Q 432 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA--GFQTAFMVPTSILAIQ 432 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH--TSCEEEECSCHHHHHH
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCcHHHHHH
Confidence 344455678999 8999999999998865 599999999999999999999998865 5789999999999999
Q ss_pred HHHHHHHhHhhCCCCccEEEEcCCCcHHHHHH----Hhc-CCcEEEeChhHHHHhhcCCCchhHHHhhhhhhhhhhcchh
Q 002135 316 QLRALLAMTKAFDASIDIGVYDGDTTQKDRMW----LRD-NARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTT 390 (961)
Q Consensus 316 q~~~l~~l~~~~~~~i~v~~~~Gd~~~~~r~~----l~~-~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~~~~~~~ 390 (961)
+++++.+++..++ ++++.++|+....++.. +.. .++|+|+||+.+...+ .+.++
T Consensus 433 ~~~~l~~~~~~~g--i~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~---------~~~~l---------- 491 (780)
T 1gm5_A 433 HYRRTVESFSKFN--IHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDV---------HFKNL---------- 491 (780)
T ss_dssp HHHHHHHHHTCSS--CCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCC---------CCSCC----------
T ss_pred HHHHHHHHhhhcC--ceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhh---------hccCC----------
Confidence 9999999887544 78899999987766532 333 4899999999875432 24455
Q ss_pred hhhhhhcceeEEEEecchhhhcccchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCChHHHHHHHcccCCeEEEecCCC
Q 002135 391 EVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGS 470 (961)
Q Consensus 391 ~~~~~~~~i~~VVIDEaH~~~~~fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~~e~~~~L~~~~~~~~i~~~g~ 470 (961)
++|||||+|++.. .... .+.. .+..++++++|||+. |......+.+..+...+...
T Consensus 492 ---------~lVVIDEaHr~g~----~qr~------~l~~--~~~~~~vL~mSATp~-p~tl~~~~~g~~~~s~i~~~-- 547 (780)
T 1gm5_A 492 ---------GLVIIDEQHRFGV----KQRE------ALMN--KGKMVDTLVMSATPI-PRSMALAFYGDLDVTVIDEM-- 547 (780)
T ss_dssp ---------CEEEEESCCCC---------C------CCCS--SSSCCCEEEEESSCC-CHHHHHHHTCCSSCEEECCC--
T ss_pred ---------ceEEecccchhhH----HHHH------HHHH--hCCCCCEEEEeCCCC-HHHHHHHHhCCcceeeeecc--
Confidence 9999999999632 1110 0111 134689999999974 55555555554434443221
Q ss_pred ccceeEEEEeCCCccccccccccccccchhhhcccCCCCcHHHHHHHHHHHHHCCCcEEEEecChHHHHHH----HHHHH
Q 002135 471 PCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELV----LSYTR 546 (961)
Q Consensus 471 p~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~k~IVF~~sr~~ae~l----~~~L~ 546 (961)
|.+.. |... ..........+...+......+.+++|||++.+.++.+ +..+.
T Consensus 548 p~~r~------~i~~------------------~~~~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~ 603 (780)
T 1gm5_A 548 PPGRK------EVQT------------------MLVPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMY 603 (780)
T ss_dssp CSSCC------CCEE------------------CCCCSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHH
T ss_pred CCCCc------ceEE------------------EEeccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHH
Confidence 11110 0000 00111223445555666666788999999987654432 11122
Q ss_pred HHHHh-hCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEeccccccccccCCccEEEEeCCCC-CHhhHHHHhccC
Q 002135 547 EILEE-TAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPG-SIASLWQQAGRS 624 (961)
Q Consensus 547 ~~l~~-~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~aLe~GIDIp~vd~VI~~~~P~-s~~sy~QR~GRA 624 (961)
+.+.+ .. .+..+..+||+|++++|++++++|++|+++|||||+++++|||+|++++||+++.|. +.++|.||+||+
T Consensus 604 ~~L~~~~~--~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRa 681 (780)
T 1gm5_A 604 EYLSKEVF--PEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRV 681 (780)
T ss_dssp HSGGGSCC-----CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTS
T ss_pred HHHHhhhc--CCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhccc
Confidence 22222 11 134688999999999999999999999999999999999999999999999999996 789999999999
Q ss_pred CCCCCCceEEEEee
Q 002135 625 GRRERPSLAVYVAF 638 (961)
Q Consensus 625 GR~g~~g~~i~l~~ 638 (961)
||.|++|.|++++.
T Consensus 682 GR~g~~g~~ill~~ 695 (780)
T 1gm5_A 682 GRGGQEAYCFLVVG 695 (780)
T ss_dssp CCSSTTCEEECCCC
T ss_pred CcCCCCCEEEEEEC
Confidence 99999999998765
No 37
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=1e-36 Score=376.26 Aligned_cols=408 Identities=15% Similarity=0.096 Sum_probs=262.9
Q ss_pred cccccccCCccccHHHHHHHHhCCCCCCcHHHHHHHHHHh-CCCcEEEEecCCchhHHHHHHHHHHHHh---cCCCCeEE
Q 002135 229 RKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASL-AGKNVVVATMTSSGKSLCYNLPVLEALS---HDLSSSAL 304 (961)
Q Consensus 229 ~~~~f~~l~~~L~~~l~~~L~~~g~~~l~~~Q~~ai~~il-~G~~vIv~apTGSGKTla~~Lpil~~l~---~~~~~~aL 304 (961)
....|.++ ++++.+.+.++.++ ..|++.|.++|..++ .|+++++++|||||||+ ++|++-... ...+.+++
T Consensus 70 ~~~~f~~~--~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~~~~g~~il 144 (773)
T 2xau_A 70 KINPFTGR--EFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMPHLENTQVA 144 (773)
T ss_dssp SBCTTTCS--BCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCGGGGTCEEE
T ss_pred CCCCcccc--CCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccccCCCceEE
Confidence 34568877 69999999998888 678889999988866 45789999999999999 566652221 11256799
Q ss_pred EEcccHHHHHHHHHHHHHhHhhCCCCccEEEEcCCCcHHHHHHHhcCCcEEEeChhHHHHhhcCCCchhHHHhhhhhhhh
Q 002135 305 YMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIA 384 (961)
Q Consensus 305 vl~PtraLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~~~r~~l~~~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~ 384 (961)
++.|+++|+.|+.+++..... ......++..... . .....+.+|+++||+++...++.. ..+.++
T Consensus 145 vl~P~r~La~q~~~~l~~~~~-~~v~~~vG~~i~~---~--~~~~~~~~I~v~T~G~l~r~l~~~-----~~l~~~---- 209 (773)
T 2xau_A 145 CTQPRRVAAMSVAQRVAEEMD-VKLGEEVGYSIRF---E--NKTSNKTILKYMTDGMLLREAMED-----HDLSRY---- 209 (773)
T ss_dssp EEESCHHHHHHHHHHHHHHTT-CCBTTTEEEEETT---E--EECCTTCSEEEEEHHHHHHHHHHS-----TTCTTE----
T ss_pred ecCchHHHHHHHHHHHHHHhC-Cchhheecceecc---c--cccCCCCCEEEECHHHHHHHHhhC-----ccccCC----
Confidence 999999999999988755432 1112223311010 0 011245899999999997655321 224444
Q ss_pred hhcchhhhhhhhcceeEEEEecchhhhcccchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCChHHHHHHHcccCCeEE
Q 002135 385 FSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLEL 464 (961)
Q Consensus 385 ~~~~~~~~~~~~~~i~~VVIDEaH~~~~~fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~~e~~~~L~~~~~~~~ 464 (961)
++|||||+|. ++.+...++..++.+... ..+.|+|++|||+ ++..... +++. ..+
T Consensus 210 ---------------~~lIlDEah~----R~ld~d~~~~~l~~l~~~--~~~~~iIl~SAT~-~~~~l~~-~~~~--~~v 264 (773)
T 2xau_A 210 ---------------SCIILDEAHE----RTLATDILMGLLKQVVKR--RPDLKIIIMSATL-DAEKFQR-YFND--APL 264 (773)
T ss_dssp ---------------EEEEECSGGG----CCHHHHHHHHHHHHHHHH--CTTCEEEEEESCS-CCHHHHH-HTTS--CCE
T ss_pred ---------------CEEEecCccc----cccchHHHHHHHHHHHHh--CCCceEEEEeccc-cHHHHHH-HhcC--CCc
Confidence 9999999996 122222233333333322 2467999999999 5555444 4442 345
Q ss_pred EecCCCccceeEEEEeCCCccccccccccccccchhhhcccCCCCcHHHHHHHHHHHHH--CCCcEEEEecChHHHHHHH
Q 002135 465 IQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQ--HGLRCIAFCRSRKLCELVL 542 (961)
Q Consensus 465 i~~~g~p~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~--~g~k~IVF~~sr~~ae~l~ 542 (961)
+...++..+...++...+ ..+........+..+.. .+.++||||++++.++.++
T Consensus 265 i~v~gr~~pv~~~~~~~~------------------------~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~ 320 (773)
T 2xau_A 265 LAVPGRTYPVELYYTPEF------------------------QRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAV 320 (773)
T ss_dssp EECCCCCCCEEEECCSSC------------------------CSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHH
T ss_pred ccccCcccceEEEEecCC------------------------chhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHH
Confidence 566665544333221110 11222222333333222 4679999999999999999
Q ss_pred HHHHHHHHhh---CCcccccEEEEcCCCCHHHHHHHHHHHh-----CCCceEEEeccccccccccCCccEEEEeCC----
Q 002135 543 SYTREILEET---APHLVDSICVYRAGYVAEDRRRIERDFF-----GGKLCGVAATNALELGIDVGHIDVTLHLGF---- 610 (961)
Q Consensus 543 ~~L~~~l~~~---~~~l~~~v~~~hggls~~eR~~ie~~f~-----~G~~~vLVAT~aLe~GIDIp~vd~VI~~~~---- 610 (961)
+.|++.+... .......+..+||++++++|+++++.|+ +|..+|||||+++++|||||++++||++|+
T Consensus 321 ~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~ 400 (773)
T 2xau_A 321 RKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQK 400 (773)
T ss_dssp HHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEE
T ss_pred HHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccce
Confidence 9988644332 1112346899999999999999999999 999999999999999999999999999988
Q ss_pred --------------CCCHhhHHHHhccCCCCCCCceEEEEeeCCcchhHHHhchHHhhcCCCcccccCCCCHHHHHHHHH
Q 002135 611 --------------PGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQNHKVLEQHLV 676 (961)
Q Consensus 611 --------------P~s~~sy~QR~GRAGR~g~~g~~i~l~~~~~~d~~~~~~~e~l~~~~ie~~~~~~~n~~vl~~~l~ 676 (961)
|.|.++|+||+|||||. ++|.|+.++.... +....+ ....++.. ..+..-+..++.
T Consensus 401 ~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~---~~~~l~----~~~~pEi~--r~~L~~~~L~l~ 470 (773)
T 2xau_A 401 VYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEA---FQKELI----EQSYPEIL--RSNLSSTVLELK 470 (773)
T ss_dssp EEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHH---HHHTSC----SSCCCGGG--GSCCHHHHHHHH
T ss_pred eeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHH---hccccc----ccCCCccc--cCcHHHHHHHHH
Confidence 89999999999999999 8899987764321 111111 11111111 111122222233
Q ss_pred HHHhcCCCChhhhhhhccCCHHHHHHHHHHCCccccCCC
Q 002135 677 CAALEHPLSLIYDEKYFGSGLSSGITTLKNRGYLSSDPS 715 (961)
Q Consensus 677 ~aa~e~p~~~~~~~~~f~~~~~~~l~~L~~~g~l~~~~~ 715 (961)
+..........+.+.+..+.+.++++.|.+.|+|..++.
T Consensus 471 ~~gi~~~~~f~~~~~p~~~~i~~a~~~L~~lgald~~~~ 509 (773)
T 2xau_A 471 KLGIDDLVHFDFMDPPAPETMMRALEELNYLACLDDEGN 509 (773)
T ss_dssp HTTCCCGGGCCCSSCCCHHHHHHHHHHHHHTTSBCTTSC
T ss_pred HcCCCChhhccccCCCcHHHHHHHHHHHHHcCCcccCCC
Confidence 322221111112222222457889999999999976654
No 38
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=2.5e-35 Score=355.20 Aligned_cols=349 Identities=15% Similarity=0.075 Sum_probs=228.1
Q ss_pred hCCCCCCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHHHHHHHHHHHHHhHhhCCC
Q 002135 250 STGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDA 329 (961)
Q Consensus 250 ~~g~~~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~PtraLa~qq~~~l~~l~~~~~~ 329 (961)
.+|+ .||++|..+++.+++|+ |+.++||+|||++|.+|++..... +..++||+||++||.|..+.+..+...++
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~--g~~vlVltptreLA~qd~e~~~~l~~~lg- 152 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT--GKGVHVVTVNEYLASRDAEQMGKIFEFLG- 152 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT--SSCEEEEESSHHHHHHHHHHHHHHHHHTT-
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHHHHhhcC-
Confidence 4799 99999999999999999 999999999999999999854443 56899999999999999999999988875
Q ss_pred CccEEEEcCCCcHHHHHHHhcCCcEEEeChhHH-HHhhcCCCchhHHHhhhhhhhhhhcchhhhhhhhcceeEEEEecch
Q 002135 330 SIDIGVYDGDTTQKDRMWLRDNARLLITNPDML-HMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAH 408 (961)
Q Consensus 330 ~i~v~~~~Gd~~~~~r~~l~~~~~IlItTPe~L-~~~lL~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~i~~VVIDEaH 408 (961)
+++++..|+.+..++. ...+++|+++||++| .+.|..+-. . ......+..+.++||||||
T Consensus 153 -l~v~~i~gg~~~~~r~-~~~~~dIv~gTpgrlgfD~L~D~m~-~----------------~~~~l~lr~~~~lVlDEaD 213 (844)
T 1tf5_A 153 -LTVGLNLNSMSKDEKR-EAYAADITYSTNNELGFDYLRDNMV-L----------------YKEQMVQRPLHFAVIDEVD 213 (844)
T ss_dssp -CCEEECCTTSCHHHHH-HHHHSSEEEEEHHHHHHHHHHHTTC-S----------------SGGGCCCCCCCEEEEETHH
T ss_pred -CeEEEEeCCCCHHHHH-HhcCCCEEEECchhhhHHHHHHhhh-c----------------chhhhcccCCCEEEECchh
Confidence 7777777776665543 344799999999999 444321100 0 0001122345999999999
Q ss_pred hhh-cc-cch--------HHHHHHHHHHHHhhcccC--------CCCcEE-----------------EeccCCCChHHHH
Q 002135 409 AYK-GA-FGC--------HTALILRRLCRLCSHVYG--------SDPSFV-----------------FSTATSANPREHC 453 (961)
Q Consensus 409 ~~~-~~-fg~--------~~~~ilrrL~~~~~~~~~--------~~~q~I-----------------~lSATl~n~~e~~ 453 (961)
.++ +. +.+ ....+...+..+...+.. ...|+. ++|||.+....++
T Consensus 214 ~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i 293 (844)
T 1tf5_A 214 SILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHI 293 (844)
T ss_dssp HHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHH
T ss_pred hhhhhccccchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHH
Confidence 987 32 110 000112223333333211 234555 6788864222222
Q ss_pred H------HHcccCCeEEE--------ec-CCCc------------------------cceeE---E--------------
Q 002135 454 M------ELANLSTLELI--------QN-DGSP------------------------CAQKL---F-------------- 477 (961)
Q Consensus 454 ~------~L~~~~~~~~i--------~~-~g~p------------------------~~~~~---~-------------- 477 (961)
. .++......++ +. .|+. ..... .
T Consensus 294 ~~al~A~~l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~Gm 373 (844)
T 1tf5_A 294 NQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGM 373 (844)
T ss_dssp HHHHHHHHTCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEE
T ss_pred HHHHHHHHHhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccC
Confidence 2 22221111111 00 0000 00000 0
Q ss_pred ------------------EEeCCCccccccccccccccchhhhcccCCCCcHHHHHHHHHHHHHCCCcEEEEecChHHHH
Q 002135 478 ------------------VLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCE 539 (961)
Q Consensus 478 ------------------~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~k~IVF~~sr~~ae 539 (961)
++.-|..... ...+...........+...+...+......+.++||||+|++.++
T Consensus 374 TGTa~te~~e~~~iY~l~vv~IPtn~p~-------~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se 446 (844)
T 1tf5_A 374 TGTAKTEEEEFRNIYNMQVVTIPTNRPV-------VRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSE 446 (844)
T ss_dssp ESCCGGGHHHHHHHHCCCEEECCCSSCC-------CCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHH
T ss_pred CcccchhHHHHHHHhCCceEEecCCCCc-------ccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHH
Confidence 0011111000 000000001111223344445555554456789999999999999
Q ss_pred HHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEeccccccccccC--------CccEEEEeCCC
Q 002135 540 LVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVG--------HIDVTLHLGFP 611 (961)
Q Consensus 540 ~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~aLe~GIDIp--------~vd~VI~~~~P 611 (961)
.++..|+. .+..+..+||++.+.+|..+.++++.| .|+||||+++||+||+ ++.+||+++.|
T Consensus 447 ~Ls~~L~~--------~gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p 516 (844)
T 1tf5_A 447 LISKLLKN--------KGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERH 516 (844)
T ss_dssp HHHHHHHT--------TTCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCC
T ss_pred HHHHHHHH--------CCCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCC
Confidence 99988865 345678999999888887666666655 6999999999999999 78899999999
Q ss_pred CCHhhHHHHhccCCCCCCCceEEEEeeCC
Q 002135 612 GSIASLWQQAGRSGRRERPSLAVYVAFEG 640 (961)
Q Consensus 612 ~s~~sy~QR~GRAGR~g~~g~~i~l~~~~ 640 (961)
.|...|.||+||+||.|.+|.+++++...
T Consensus 517 ~s~r~y~hr~GRTGRqG~~G~s~~~vs~e 545 (844)
T 1tf5_A 517 ESRRIDNQLRGRSGRQGDPGITQFYLSME 545 (844)
T ss_dssp SSHHHHHHHHTTSSGGGCCEEEEEEEETT
T ss_pred CCHHHHHhhcCccccCCCCCeEEEEecHH
Confidence 99999999999999999999998877644
No 39
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=1.9e-34 Score=369.66 Aligned_cols=318 Identities=18% Similarity=0.223 Sum_probs=237.3
Q ss_pred HHHHHHH-HhCCCCCCcHHHHHHHHHHhC----CC--cEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHHHHH
Q 002135 242 DNTKSAL-KSTGISKLYSHQAESIMASLA----GK--NVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQ 314 (961)
Q Consensus 242 ~~l~~~L-~~~g~~~l~~~Q~~ai~~il~----G~--~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~PtraLa~ 314 (961)
+...+.+ ..++|+ ++++|.+|++.+++ |+ ++++++|||||||++|+++++..+.. +.+++|++||++|++
T Consensus 590 ~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~--g~~vlvlvPt~~La~ 666 (1151)
T 2eyq_A 590 REQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN--HKQVAVLVPTTLLAQ 666 (1151)
T ss_dssp HHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT--TCEEEEECSSHHHHH
T ss_pred HHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh--CCeEEEEechHHHHH
Confidence 3444444 457885 79999999999886 66 99999999999999999999887654 569999999999999
Q ss_pred HHHHHHHHhHhhCCCCccEEEEcCCCcHHHHH----HHhc-CCcEEEeChhHHHHhhcCCCchhHHHhhhhhhhhhhcch
Q 002135 315 DQLRALLAMTKAFDASIDIGVYDGDTTQKDRM----WLRD-NARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVT 389 (961)
Q Consensus 315 qq~~~l~~l~~~~~~~i~v~~~~Gd~~~~~r~----~l~~-~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~~~~~~ 389 (961)
|+++++.+.+..+ ++.+..++|.....++. .+.. .++|+|+||+.|...+ .+.++
T Consensus 667 Q~~~~~~~~~~~~--~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~---------~~~~l--------- 726 (1151)
T 2eyq_A 667 QHYDNFRDRFANW--PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDV---------KFKDL--------- 726 (1151)
T ss_dssp HHHHHHHHHSTTT--TCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCC---------CCSSE---------
T ss_pred HHHHHHHHHhhcC--CCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCc---------ccccc---------
Confidence 9999999876644 37788888877665543 2334 4899999998774321 13444
Q ss_pred hhhhhhhcceeEEEEecchhhhcccchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCChHHHHHHHcccCCeEEEecCC
Q 002135 390 TEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDG 469 (961)
Q Consensus 390 ~~~~~~~~~i~~VVIDEaH~~~~~fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~~e~~~~L~~~~~~~~i~~~g 469 (961)
++|||||+|+ ||......++.++ .+.+++++|||+. |......+.+..+...+....
T Consensus 727 ----------~lvIiDEaH~----~g~~~~~~l~~l~--------~~~~vl~lSATp~-p~~l~~~~~~~~~~~~i~~~~ 783 (1151)
T 2eyq_A 727 ----------GLLIVDEEHR----FGVRHKERIKAMR--------ANVDILTLTATPI-PRTLNMAMSGMRDLSIIATPP 783 (1151)
T ss_dssp ----------EEEEEESGGG----SCHHHHHHHHHHH--------TTSEEEEEESSCC-CHHHHHHHTTTSEEEECCCCC
T ss_pred ----------ceEEEechHh----cChHHHHHHHHhc--------CCCCEEEEcCCCC-hhhHHHHHhcCCCceEEecCC
Confidence 9999999999 4555544444432 3579999999974 444444455544443332211
Q ss_pred Ccc-ceeEEEEeCCCccccccccccccccchhhhcccCCCCcHHHHHHHHHHHHHCCCcEEEEecChHHHHHHHHHHHHH
Q 002135 470 SPC-AQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREI 548 (961)
Q Consensus 470 ~p~-~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~k~IVF~~sr~~ae~l~~~L~~~ 548 (961)
... ....++. ..+. ..+...+......+.+++|||++++.++.+++.|++.
T Consensus 784 ~~r~~i~~~~~---------------------------~~~~-~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~ 835 (1151)
T 2eyq_A 784 ARRLAVKTFVR---------------------------EYDS-MVVREAILREILRGGQVYYLYNDVENIQKAAERLAEL 835 (1151)
T ss_dssp CBCBCEEEEEE---------------------------ECCH-HHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHH
T ss_pred CCccccEEEEe---------------------------cCCH-HHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHh
Confidence 100 0000000 0111 2222233333446789999999999999999988774
Q ss_pred HHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEeccccccccccCCccEEEEeCC-CCCHhhHHHHhccCCCC
Q 002135 549 LEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGF-PGSIASLWQQAGRSGRR 627 (961)
Q Consensus 549 l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~aLe~GIDIp~vd~VI~~~~-P~s~~sy~QR~GRAGR~ 627 (961)
+. ..++..+||++++.+|++++++|++|+.+|||||+++++|||+|++++||+++. +.+..+|+||+||+||.
T Consensus 836 ~p------~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~ 909 (1151)
T 2eyq_A 836 VP------EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRS 909 (1151)
T ss_dssp CT------TSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBT
T ss_pred CC------CCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcC
Confidence 21 346899999999999999999999999999999999999999999999999998 56999999999999999
Q ss_pred CCCceEEEEeeC
Q 002135 628 ERPSLAVYVAFE 639 (961)
Q Consensus 628 g~~g~~i~l~~~ 639 (961)
|+.|.|++++..
T Consensus 910 g~~g~~~ll~~~ 921 (1151)
T 2eyq_A 910 HHQAYAWLLTPH 921 (1151)
T ss_dssp TBCEEEEEEECC
T ss_pred CCceEEEEEECC
Confidence 999999987754
No 40
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=2.4e-35 Score=350.17 Aligned_cols=328 Identities=15% Similarity=0.113 Sum_probs=221.4
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHHHHHHHHHHHHHhHhhCCCCccE
Q 002135 254 SKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDI 333 (961)
Q Consensus 254 ~~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~PtraLa~qq~~~l~~l~~~~~~~i~v 333 (961)
.+|+++|.+|++.+++++++++++|||||||++|++|+...+.. .+.++|||+||++|+.|+.+++.++... ....+
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-~~~~vlvl~P~~~L~~Q~~~~~~~~~~~--~~~~v 188 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-YEGKILIIVPTTALTTQMADDFVDYRLF--SHAMI 188 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH-CSSEEEEEESSHHHHHHHHHHHHHTTSS--CGGGE
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC-CCCeEEEEECcHHHHHHHHHHHHHhhcC--Cccce
Confidence 37999999999999999999999999999999999999887764 3459999999999999999999887432 23567
Q ss_pred EEEcCCCcHHHHHHHhcCCcEEEeChhHHHHhhcCCCchhHHHhhhhhhhhhhcchhhhhhhhcceeEEEEecchhhhcc
Q 002135 334 GVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGA 413 (961)
Q Consensus 334 ~~~~Gd~~~~~r~~l~~~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~i~~VVIDEaH~~~~~ 413 (961)
..+.|+....++ +...++|+|+||+.|... ....+.++ ++|||||+|++..
T Consensus 189 ~~~~~~~~~~~~--~~~~~~I~i~T~~~l~~~-------~~~~~~~~-------------------~liIiDE~H~~~~- 239 (510)
T 2oca_A 189 KKIGGGASKDDK--YKNDAPVVVGTWQTVVKQ-------PKEWFSQF-------------------GMMMNDECHLATG- 239 (510)
T ss_dssp EECGGGCCTTGG--GCTTCSEEEEEHHHHTTS-------CGGGGGGE-------------------EEEEEETGGGCCH-
T ss_pred EEEecCCccccc--cccCCcEEEEeHHHHhhc-------hhhhhhcC-------------------CEEEEECCcCCCc-
Confidence 777777655432 456689999999976421 11234455 9999999999764
Q ss_pred cchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCChHHHHH---HHcccCCeEEEecCCC-------ccceeEE--EEeC
Q 002135 414 FGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCM---ELANLSTLELIQNDGS-------PCAQKLF--VLWN 481 (961)
Q Consensus 414 fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~~e~~~---~L~~~~~~~~i~~~g~-------p~~~~~~--~l~~ 481 (961)
.++ ..+...+ ...++++++|||+++...... .+.+ ...+..... ....... ....
T Consensus 240 --~~~-------~~il~~~-~~~~~~l~lSATp~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 306 (510)
T 2oca_A 240 --KSI-------SSIISGL-NNCMFKFGLSGSLRDGKANIMQYVGMFG---EIFKPVTTSKLMEDGQVTELKINSIFLRY 306 (510)
T ss_dssp --HHH-------HHHGGGC-TTCCEEEEEESCGGGCSSCHHHHHHHHC---SEECCCCCC---------CCEEEEEEEEC
T ss_pred --ccH-------HHHHHhc-ccCcEEEEEEeCCCCCcccHHHhHHhhC---CeEEeeCHHHHhhCCcCCCceEEEEeecC
Confidence 222 2232222 346789999999965432211 2222 122111110 0000000 0000
Q ss_pred CCccccccccccccccchhhhcccCCCCcHHHHHHHHHHHHHCCC-cEEEEecChHHHHHHHHHHHHHHHhhCCcccccE
Q 002135 482 PTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGL-RCIAFCRSRKLCELVLSYTREILEETAPHLVDSI 560 (961)
Q Consensus 482 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~-k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v 560 (961)
+...... ... ...............+...+..++......+. ++||||+ .+.++.+++.|.+ .+..+
T Consensus 307 ~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~--------~~~~v 374 (510)
T 2oca_A 307 PDEFTTK-LKG--KTYQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKN--------EYDKV 374 (510)
T ss_dssp CHHHHHH-HTT--CCHHHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHT--------TCSSE
T ss_pred ChHHhcc-ccc--cchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHH--------cCCCe
Confidence 1000000 000 00000000111111223334445554444444 5566666 8888888777754 22378
Q ss_pred EEEcCCCCHHHHHHHHHHHhCCCceEEEec-cccccccccCCccEEEEeCCCCCHhhHHHHhccCCCCCCCceEEEEee
Q 002135 561 CVYRAGYVAEDRRRIERDFFGGKLCGVAAT-NALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAF 638 (961)
Q Consensus 561 ~~~hggls~~eR~~ie~~f~~G~~~vLVAT-~aLe~GIDIp~vd~VI~~~~P~s~~sy~QR~GRAGR~g~~g~~i~l~~ 638 (961)
..+||++++.+|+++++.|++|+.+||||| +++++|+|+|++++||+++.|.|..+|+||+||+||.|+.+..++++.
T Consensus 375 ~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 375 YYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp EEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred EEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 999999999999999999999999999999 999999999999999999999999999999999999988774444443
No 41
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=4.2e-36 Score=362.23 Aligned_cols=313 Identities=15% Similarity=0.068 Sum_probs=212.7
Q ss_pred ccHHHHHHHHhCCCCCCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHHHHHHHHHH
Q 002135 240 LLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRA 319 (961)
Q Consensus 240 L~~~l~~~L~~~g~~~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~PtraLa~qq~~~ 319 (961)
+++.+.++|... ...++|+|+.+++.+++|++++++||||||||++|++|+++.+.. .+.++||++||++||.|+.+.
T Consensus 157 ~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~-~~~~vLvl~PtreLa~Qi~~~ 234 (618)
T 2whx_A 157 KSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK-RRLRTLILAPTRVVAAEMEEA 234 (618)
T ss_dssp -----CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHH
T ss_pred chHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEcChHHHHHHHHHH
Confidence 455554444432 467889888889999999999999999999999999999988876 467999999999999999988
Q ss_pred HHHhHhhCCCCccEEEEcCCCcHHHHHHHhcCCcEEEeChhHHHHhhcCCCchhHHHhhhhhhhhhhcchhhhhhhhcce
Q 002135 320 LLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFI 399 (961)
Q Consensus 320 l~~l~~~~~~~i~v~~~~Gd~~~~~r~~l~~~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~i 399 (961)
+.. ..+. +.+..... ....+..+.++|.+.+...++. ...+.+ +
T Consensus 235 l~~--------~~v~-~~~~~l~~---~~tp~~~i~~~t~~~l~~~l~~-----~~~l~~-------------------~ 278 (618)
T 2whx_A 235 LRG--------LPIR-YQTPAVKS---DHTGREIVDLMCHATFTTRLLS-----STRVPN-------------------Y 278 (618)
T ss_dssp TTT--------SCEE-ECCTTSSC---CCCSSSCEEEEEHHHHHHHHHH-----CSSCCC-------------------C
T ss_pred hcC--------Ccee-Eeccccee---ccCCCceEEEEChHHHHHHHhc-----cccccC-------------------C
Confidence 752 2333 33332110 0111234555666655432211 011334 4
Q ss_pred eEEEEecchhhhcccchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCChHHHHHHHcccCCeEEEecCCCccceeEEEE
Q 002135 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVL 479 (961)
Q Consensus 400 ~~VVIDEaH~~~~~fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~~e~~~~L~~~~~~~~i~~~g~p~~~~~~~l 479 (961)
++|||||||++...|...+..+++.+.+ .+.|+|++|||+++... .+... +...+....
T Consensus 279 ~~iViDEah~~~~~~~~~~~~i~~~l~~-------~~~q~il~SAT~~~~~~---~~~~~-~~~~~~v~~---------- 337 (618)
T 2whx_A 279 NLIVMDEAHFTDPCSVAARGYISTRVEM-------GEAAAIFMTATPPGSTD---PFPQS-NSPIEDIER---------- 337 (618)
T ss_dssp SEEEEESTTCCSHHHHHHHHHHHHHHHH-------TSCEEEEECSSCTTCCC---SSCCC-SSCEEEEEC----------
T ss_pred eEEEEECCCCCCccHHHHHHHHHHHhcc-------cCccEEEEECCCchhhh---hhhcc-CCceeeecc----------
Confidence 9999999999844466666666655432 46799999999975421 12110 011110000
Q ss_pred eCCCccccccccccccccchhhhcccCCCCcHHHHHHHHHHHHHCCCcEEEEecChHHHHHHHHHHHHHHHhhCCccccc
Q 002135 480 WNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDS 559 (961)
Q Consensus 480 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~ 559 (961)
..|.. ... .++..+.+.+.++||||+|++.|+.+++.|++ .+..
T Consensus 338 ~~~~~----------------------~~~------~ll~~l~~~~~~~LVF~~s~~~a~~l~~~L~~--------~g~~ 381 (618)
T 2whx_A 338 EIPER----------------------SWN------TGFDWITDYQGKTVWFVPSIKAGNDIANCLRK--------SGKR 381 (618)
T ss_dssp CCCSS----------------------CCS------SSCHHHHHCCSCEEEECSSHHHHHHHHHHHHH--------TTCC
T ss_pred cCCHH----------------------HHH------HHHHHHHhCCCCEEEEECChhHHHHHHHHHHH--------cCCc
Confidence 00000 000 11222334577999999999999999998876 3457
Q ss_pred EEEEcCCCCHHHHHHHHHHHhCCCceEEEeccccccccccCCccEE--------------------EEeCCCCCHhhHHH
Q 002135 560 ICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVT--------------------LHLGFPGSIASLWQ 619 (961)
Q Consensus 560 v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~aLe~GIDIp~vd~V--------------------I~~~~P~s~~sy~Q 619 (961)
+..+||. +|.++++.|++|+.+|||||+++++|||+| +++| |+++.|.|.++|+|
T Consensus 382 v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQ 456 (618)
T 2whx_A 382 VIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQ 456 (618)
T ss_dssp EEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHH
T ss_pred EEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHH
Confidence 8899984 788899999999999999999999999997 9888 77788999999999
Q ss_pred HhccCCCCCC-CceEEEEeeC-CcchhHHHhchHH
Q 002135 620 QAGRSGRRER-PSLAVYVAFE-GPLDQYFMKYPEK 652 (961)
Q Consensus 620 R~GRAGR~g~-~g~~i~l~~~-~~~d~~~~~~~e~ 652 (961)
|+|||||.|. +|.+++++.. .+.|....+.++.
T Consensus 457 R~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~ 491 (618)
T 2whx_A 457 RRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEA 491 (618)
T ss_dssp HHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHH
T ss_pred hccccCCCCCCCCeEEEEccCCchhhHHHHHHHHh
Confidence 9999999964 8999887752 2334334444443
No 42
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=8.8e-34 Score=340.77 Aligned_cols=349 Identities=15% Similarity=0.045 Sum_probs=215.4
Q ss_pred hCCCCCCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHHHHHHHHHHHHHhHhhCCC
Q 002135 250 STGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDA 329 (961)
Q Consensus 250 ~~g~~~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~PtraLa~qq~~~l~~l~~~~~~ 329 (961)
.+|. .||++|..+++.+++|+ |+.++||||||++|.+|++..... +..+++++||++||.|..+.+..+...++
T Consensus 70 ~lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~--g~~vlVltPTreLA~Q~~e~~~~l~~~lg- 143 (853)
T 2fsf_A 70 VFGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT--GKGVHVVTVNDYLAQRDAENNRPLFEFLG- 143 (853)
T ss_dssp HHSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT--SSCCEEEESSHHHHHHHHHHHHHHHHHTT-
T ss_pred HcCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc--CCcEEEEcCCHHHHHHHHHHHHHHHHhcC-
Confidence 3676 89999999999999998 999999999999999999865543 56899999999999999999999998875
Q ss_pred CccEEEEcCCCcHHHHHHHhcCCcEEEeChhHH-HHhhcCCCchhHHHhhhhhhhhhhcchhhhhhhhcceeEEEEecch
Q 002135 330 SIDIGVYDGDTTQKDRMWLRDNARLLITNPDML-HMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAH 408 (961)
Q Consensus 330 ~i~v~~~~Gd~~~~~r~~l~~~~~IlItTPe~L-~~~lL~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~i~~VVIDEaH 408 (961)
++++++.|+.+...+ .+..+++|+|+||++| .+.|..+.. +. .....+.+++++||||||
T Consensus 144 -l~v~~i~GG~~~~~r-~~~~~~dIvvgTpgrl~fDyLrd~~~-~~----------------~~~~~~~~l~~lVlDEaD 204 (853)
T 2fsf_A 144 -LTVGINLPGMPAPAK-REAYAADITYGTNNEYGFDYLRDNMA-FS----------------PEERVQRKLHYALVDEVD 204 (853)
T ss_dssp -CCEEECCTTCCHHHH-HHHHHSSEEEEEHHHHHHHHHHHTTC-SS----------------GGGCCCCSCCEEEESCHH
T ss_pred -CeEEEEeCCCCHHHH-HHhcCCCEEEECCchhhHHHHHhhhh-cc----------------HhHhcccCCcEEEECchH
Confidence 778777777766544 3445799999999998 454421100 00 001112344999999999
Q ss_pred hhhcc-----------------cchHHHHHHHHHHHHhh---------ccc---CCCCcEE-------------------
Q 002135 409 AYKGA-----------------FGCHTALILRRLCRLCS---------HVY---GSDPSFV------------------- 440 (961)
Q Consensus 409 ~~~~~-----------------fg~~~~~ilrrL~~~~~---------~~~---~~~~q~I------------------- 440 (961)
.++.+ |-..+..++..+..-.. ..| ....|+.
T Consensus 205 ~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~ 284 (853)
T 2fsf_A 205 SILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIM 284 (853)
T ss_dssp HHTTTTTTCEEEEEEC----------------------------------------------------------------
T ss_pred HHHHhcCcccccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcc
Confidence 98731 22344455555532000 000 0012221
Q ss_pred -----EeccCCCChHHHHH------HHc--------------------cc-----------C--------------C--e
Q 002135 441 -----FSTATSANPREHCM------ELA--------------------NL-----------S--------------T--L 462 (961)
Q Consensus 441 -----~lSATl~n~~e~~~------~L~--------------------~~-----------~--------------~--~ 462 (961)
+.|||.+....++. .++ |. . + .
T Consensus 285 ~~~~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tl 364 (853)
T 2fsf_A 285 DEGESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTL 364 (853)
T ss_dssp ------------------------------------------------------------------------CCCCCEEE
T ss_pred cccccccCcccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceeccccccc
Confidence 56777532111110 000 00 0 0 0
Q ss_pred EEEec-------------CCCccc--------eeEEEEeCCCccccccccccccccchhhhcccCCCCcHHHHHHHHHHH
Q 002135 463 ELIQN-------------DGSPCA--------QKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEM 521 (961)
Q Consensus 463 ~~i~~-------------~g~p~~--------~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l 521 (961)
..|.. .|.... ...-++.-|........ +...........+...+...+...
T Consensus 365 a~It~qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~-------d~~d~v~~~~~~K~~al~~~i~~~ 437 (853)
T 2fsf_A 365 ASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRK-------DLPDLVYMTEAEKIQAIIEDIKER 437 (853)
T ss_dssp EEEEHHHHHTTSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCE-------ECCCEEESSHHHHHHHHHHHHHHH
T ss_pred ceeehHHHHhhhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceee-------cCCcEEEeCHHHHHHHHHHHHHHH
Confidence 00000 000000 00011112221110000 000001112223444455555555
Q ss_pred HHCCCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEeccccccccccCC
Q 002135 522 VQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGH 601 (961)
Q Consensus 522 ~~~g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~aLe~GIDIp~ 601 (961)
...+.++||||+|+..+|.++..|+. .+..+.++||.+.+.+|..+.++|+.| .|+||||+++||+||+.
T Consensus 438 ~~~gqpvLVft~sie~se~Ls~~L~~--------~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l 507 (853)
T 2fsf_A 438 TAKGQPVLVGTISIEKSELVSNELTK--------AGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVL 507 (853)
T ss_dssp HTTTCCEEEEESSHHHHHHHHHHHHH--------TTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCT
T ss_pred hcCCCCEEEEECcHHHHHHHHHHHHH--------CCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccC
Confidence 55788999999999999999998876 345678899999888888888889888 69999999999999987
Q ss_pred c-------------------------------------cEEEEeCCCCCHhhHHHHhccCCCCCCCceEEEEeeCC
Q 002135 602 I-------------------------------------DVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEG 640 (961)
Q Consensus 602 v-------------------------------------d~VI~~~~P~s~~sy~QR~GRAGR~g~~g~~i~l~~~~ 640 (961)
. .+||+++.|.|...|.||+||+||.|.+|.+++++...
T Consensus 508 ~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~e 583 (853)
T 2fsf_A 508 GGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSME 583 (853)
T ss_dssp TCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETT
T ss_pred CCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEeccc
Confidence 3 59999999999999999999999999999998777543
No 43
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=5.5e-35 Score=341.62 Aligned_cols=287 Identities=14% Similarity=0.041 Sum_probs=200.2
Q ss_pred CCCCCcHHHHHHHHHHhCCCcE-EEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHHHHHHHHHHHHHhHhhCCCC
Q 002135 252 GISKLYSHQAESIMASLAGKNV-VVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDAS 330 (961)
Q Consensus 252 g~~~l~~~Q~~ai~~il~G~~v-Iv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~PtraLa~qq~~~l~~l~~~~~~~ 330 (961)
|+.+++|+|+ +|+.+++|+++ ++++|||||||++|++|++..+.. .+.++||++||++|+.|+.+.+..
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~-~~~~~lvl~Ptr~La~Q~~~~l~g-------- 70 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL-RRLRTLILAPTRVVAAEMEEALRG-------- 70 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTTT--------
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh-cCCcEEEECCCHHHHHHHHHHhcC--------
Confidence 6788999985 79999999887 999999999999999999987765 367999999999999999988742
Q ss_pred ccEEEEcCCCcHHHHHHHhcCCcEEEeChhHHHHhhcCCCchhHHHhhhhhhhhhhcchhhhhhhhcceeEEEEecchhh
Q 002135 331 IDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAY 410 (961)
Q Consensus 331 i~v~~~~Gd~~~~~r~~l~~~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~i~~VVIDEaH~~ 410 (961)
..+....+.... ....+..|.++|++.+...++.. ..+.++ ++|||||||++
T Consensus 71 ~~v~~~~~~~~~----~~~~~~~i~~~t~~~l~~~l~~~-----~~l~~~-------------------~~iViDEah~~ 122 (451)
T 2jlq_A 71 LPIRYQTPAVKS----DHTGREIVDLMCHATFTTRLLSS-----TRVPNY-------------------NLIVMDEAHFT 122 (451)
T ss_dssp SCEEECCTTCSC----CCCSSCCEEEEEHHHHHHHHHHC-----SCCCCC-------------------SEEEEETTTCC
T ss_pred ceeeeeeccccc----cCCCCceEEEEChHHHHHHhhCc-----ccccCC-------------------CEEEEeCCccC
Confidence 233322221111 11234578899999886554211 123444 99999999987
Q ss_pred hcccchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCChHHHHHHHcccCCeEEEecCCCccceeEEEEeCCCccccccc
Q 002135 411 KGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVL 490 (961)
Q Consensus 411 ~~~fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~~e~~~~L~~~~~~~~i~~~g~p~~~~~~~l~~p~~~~~~~~ 490 (961)
...+. ..+..+.... ...++|+|++|||+++... ..+.+. ...+. ...+...
T Consensus 123 ~~~~~----~~~~~~~~~~---~~~~~~~i~~SAT~~~~~~--~~~~~~--~~~~~------------~~~~~p~----- 174 (451)
T 2jlq_A 123 DPCSV----AARGYISTRV---EMGEAAAIFMTATPPGSTD--PFPQSN--SPIED------------IEREIPE----- 174 (451)
T ss_dssp SHHHH----HHHHHHHHHH---HTTSCEEEEECSSCTTCCC--SSCCCS--SCEEE------------EECCCCS-----
T ss_pred CcchH----HHHHHHHHhh---cCCCceEEEEccCCCccch--hhhcCC--CceEe------------cCccCCc-----
Confidence 22122 2222222211 2356899999999864211 111110 01100 0000000
Q ss_pred cccccccchhhhcccCCCCcHHHHHHHHHHHHHCCCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHH
Q 002135 491 NKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAE 570 (961)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~ 570 (961)
.. .... +..+.+.+.++||||++++.|+.+++.|++ .+..+..+||.+
T Consensus 175 -~~-------------~~~~-------~~~l~~~~~~~lVF~~s~~~a~~l~~~L~~--------~g~~~~~lh~~~--- 222 (451)
T 2jlq_A 175 -RS-------------WNTG-------FDWITDYQGKTVWFVPSIKAGNDIANCLRK--------SGKRVIQLSRKT--- 222 (451)
T ss_dssp -SC-------------CSSS-------CHHHHHCCSCEEEECSSHHHHHHHHHHHHT--------TTCCEEEECTTT---
T ss_pred -hh-------------hHHH-------HHHHHhCCCCEEEEcCCHHHHHHHHHHHHH--------cCCeEEECCHHH---
Confidence 00 0000 112233567999999999999999988865 245688899865
Q ss_pred HHHHHHHHHhCCCceEEEeccccccccccCCccEEEEeC--------------------CCCCHhhHHHHhccCCCCCC-
Q 002135 571 DRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLG--------------------FPGSIASLWQQAGRSGRRER- 629 (961)
Q Consensus 571 eR~~ie~~f~~G~~~vLVAT~aLe~GIDIp~vd~VI~~~--------------------~P~s~~sy~QR~GRAGR~g~- 629 (961)
++++++.|++|+.+|||||+++++|||+|+ ++||++| .|.|.++|+||+|||||.|+
T Consensus 223 -~~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~ 300 (451)
T 2jlq_A 223 -FDTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQ 300 (451)
T ss_dssp -HHHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTC
T ss_pred -HHHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCC
Confidence 467899999999999999999999999999 9999999 99999999999999999998
Q ss_pred CceEEEEee
Q 002135 630 PSLAVYVAF 638 (961)
Q Consensus 630 ~g~~i~l~~ 638 (961)
+|.++++..
T Consensus 301 ~g~~~~~~~ 309 (451)
T 2jlq_A 301 EDDQYVFSG 309 (451)
T ss_dssp CCEEEEECS
T ss_pred CccEEEEeC
Confidence 788876653
No 44
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=8.8e-34 Score=333.38 Aligned_cols=318 Identities=18% Similarity=0.176 Sum_probs=211.9
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHHHHHHHHHHHHHhHhhCCCCcc-E
Q 002135 255 KLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASID-I 333 (961)
Q Consensus 255 ~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~PtraLa~qq~~~l~~l~~~~~~~i~-v 333 (961)
+|+++|.+|++.+++++++++++|||||||++|+.++... +.++|||+|+++|+.|+.+++.++ ++. +
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~-----~~~~Lvl~P~~~L~~Q~~~~~~~~------~~~~v 161 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----STPTLIVVPTLALAEQWKERLGIF------GEEYV 161 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH-----CSCEEEEESSHHHHHHHHHHGGGG------CGGGE
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc-----CCCEEEEECCHHHHHHHHHHHHhC------CCcce
Confidence 7999999999999999999999999999999999998865 578999999999999999998873 366 8
Q ss_pred EEEcCCCcHHHHHHHhcCCcEEEeChhHHHHhhcCCCchhHHHhhhhhhhhhhcchhhhhhhhcceeEEEEecchhhhcc
Q 002135 334 GVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGA 413 (961)
Q Consensus 334 ~~~~Gd~~~~~r~~l~~~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~i~~VVIDEaH~~~~~ 413 (961)
++++|+... .++|+|+||+++...+ ..+..++ ++|||||+|++.+.
T Consensus 162 ~~~~g~~~~--------~~~Ivv~T~~~l~~~~-------~~~~~~~-------------------~liIvDEaH~~~~~ 207 (472)
T 2fwr_A 162 GEFSGRIKE--------LKPLTVSTYDSAYVNA-------EKLGNRF-------------------MLLIFDEVHHLPAE 207 (472)
T ss_dssp EEBSSSCBC--------CCSEEEEEHHHHHHTH-------HHHTTTC-------------------SEEEEETGGGTTST
T ss_pred EEECCCcCC--------cCCEEEEEcHHHHHHH-------HHhcCCC-------------------CEEEEECCcCCCCh
Confidence 899987643 4799999999986432 1111234 99999999998763
Q ss_pred cchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCChHH---HHHHHcccCCeEEEecC-----CC-ccceeEE-EEeCCC
Q 002135 414 FGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPRE---HCMELANLSTLELIQND-----GS-PCAQKLF-VLWNPT 483 (961)
Q Consensus 414 fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~~e---~~~~L~~~~~~~~i~~~-----g~-p~~~~~~-~l~~p~ 483 (961)
.+.. +... -..+++|++|||+.+... ....+.+. ...... .. ....... ......
T Consensus 208 ---~~~~----~~~~-----~~~~~~l~lSATp~~~~~~~~~l~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 272 (472)
T 2fwr_A 208 ---SYVQ----IAQM-----SIAPFRLGLTATFEREDGRHEILKEVVGG---KVFELFPDSLAGKHLAKYTIKRIFVPLA 272 (472)
T ss_dssp ---TTHH----HHHT-----CCCSEEEEEESCCCCTTSGGGSHHHHTCC---EEEECCHHHHTSCCCCSEEECCEEECCC
T ss_pred ---HHHH----HHHh-----cCCCeEEEEecCccCCCCHHHHHHHHhCC---eEeecCHHHHhcCcCCCeEEEEEEcCCC
Confidence 1111 2221 135689999999974321 12222221 111100 00 0000000 000000
Q ss_pred ccccccc--------------cccccccchhh-----------------------hcccCCCCcHHHHHHHHHHHHHCCC
Q 002135 484 SCLRSVL--------------NKSQTDMDDTR-----------------------NAANKTSSPISEVSYLFAEMVQHGL 526 (961)
Q Consensus 484 ~~~~~~~--------------~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~ll~~l~~~g~ 526 (961)
....... ........... ........+...+..++.. ..+.
T Consensus 273 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~ 350 (472)
T 2fwr_A 273 EDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER--HRKD 350 (472)
T ss_dssp HHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH--TSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh--CCCC
Confidence 0000000 00000000000 0001112222333334433 2478
Q ss_pred cEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEeccccccccccCCccEEE
Q 002135 527 RCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTL 606 (961)
Q Consensus 527 k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~aLe~GIDIp~vd~VI 606 (961)
++||||++++.++.+++.| .+..+||+++..+|++++++|++|+.+|||||+++++|+|+|++++||
T Consensus 351 k~lvF~~~~~~~~~l~~~l-------------~~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi 417 (472)
T 2fwr_A 351 KIIIFTRHNELVYRISKVF-------------LIPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGV 417 (472)
T ss_dssp CBCCBCSCHHHHHHHHHHT-------------TCCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEE
T ss_pred cEEEEECCHHHHHHHHHHh-------------CcceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEE
Confidence 9999999999999888765 245789999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHhhHHHHhccCCCCCCC-ce--EEEEeeCCcchhHHH
Q 002135 607 HLGFPGSIASLWQQAGRSGRRERP-SL--AVYVAFEGPLDQYFM 647 (961)
Q Consensus 607 ~~~~P~s~~sy~QR~GRAGR~g~~-g~--~i~l~~~~~~d~~~~ 647 (961)
+++.|+|...|+||+||+||.|+. +. .+.++..+..|..+.
T Consensus 418 ~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~~~ 461 (472)
T 2fwr_A 418 IMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVNTA 461 (472)
T ss_dssp EECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC-----
T ss_pred EECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCCchHHHH
Confidence 999999999999999999999854 34 444455555554433
No 45
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=4.9e-35 Score=340.72 Aligned_cols=290 Identities=15% Similarity=0.108 Sum_probs=187.8
Q ss_pred HHhCCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHHHHHHHHHHHHHhHhhCCCCccEEEEcCCCcHHHH
Q 002135 266 ASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDR 345 (961)
Q Consensus 266 ~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~PtraLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~~~r 345 (961)
++++|+|+++++|||||||++|++|++..+..+ +.+++|++||++||.|+++.+..+ .+....+...
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~-~~~~lil~Ptr~La~Q~~~~l~~~--------~v~~~~~~~~---- 70 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR-RLRTLVLAPTRVVLSEMKEAFHGL--------DVKFHTQAFS---- 70 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT-TCCEEEEESSHHHHHHHHHHTTTS--------CEEEESSCCC----
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc-CCeEEEEcchHHHHHHHHHHHhcC--------CeEEecccce----
Confidence 357899999999999999999999999987653 578999999999999999887632 2332222110
Q ss_pred HHHhcCCcEEEeChhHHHHhhcCCCchhHHHhhhhhhhhhhcchhhhhhhhcceeEEEEecchhhhcccchHHHHHHHHH
Q 002135 346 MWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRL 425 (961)
Q Consensus 346 ~~l~~~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~i~~VVIDEaH~~~~~fg~~~~~ilrrL 425 (961)
.++||+++.+.+. +...... + .....+.++++|||||+|++...+...+.. +
T Consensus 71 ---------~v~Tp~~l~~~l~--~~~l~~~---~----------~~~~~~~~l~~vViDEah~~~~~~~~~~~~----~ 122 (440)
T 1yks_A 71 ---------AHGSGREVIDAMC--HATLTYR---M----------LEPTRVVNWEVIIMDEAHFLDPASIAARGW----A 122 (440)
T ss_dssp ---------CCCCSSCCEEEEE--HHHHHHH---H----------TSSSCCCCCSEEEETTTTCCSHHHHHHHHH----H
T ss_pred ---------eccCCccceeeec--ccchhHh---h----------hCcccccCccEEEEECccccCcchHHHHHH----H
Confidence 3788887754331 0111100 0 001123345999999999983223332222 3
Q ss_pred HHHhhcccCCCCcEEEeccCCCChHHHHHHHcccCCeEEEecCCCccceeEEEEeCCCccccccccccccccchhhhccc
Q 002135 426 CRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAAN 505 (961)
Q Consensus 426 ~~~~~~~~~~~~q~I~lSATl~n~~e~~~~L~~~~~~~~i~~~g~p~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~ 505 (961)
.+... ..++|++++|||++.... .+... ...........+. .
T Consensus 123 ~~~~~---~~~~~~l~~SAT~~~~~~---~~~~~-----------~~~~~~~~~~~~~---------------------~ 164 (440)
T 1yks_A 123 AHRAR---ANESATILMTATPPGTSD---EFPHS-----------NGEIEDVQTDIPS---------------------E 164 (440)
T ss_dssp HHHHH---TTSCEEEEECSSCTTCCC---SSCCC-----------SSCEEEEECCCCS---------------------S
T ss_pred HHHhc---cCCceEEEEeCCCCchhh---hhhhc-----------CCCeeEeeeccCh---------------------H
Confidence 32221 346899999999864311 11110 0000000000000 0
Q ss_pred CCCCcHHHHHHHHHHHHHCCCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCce
Q 002135 506 KTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLC 585 (961)
Q Consensus 506 ~~~~~~~~~~~ll~~l~~~g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~ 585 (961)
.... ++..+.+.+.++||||++++.|+.+++.|++ .+..+..+|| ++|+++++.|++|+++
T Consensus 165 ~~~~-------~~~~l~~~~~~~lVF~~s~~~a~~l~~~L~~--------~~~~v~~lhg----~~R~~~~~~F~~g~~~ 225 (440)
T 1yks_A 165 PWNT-------GHDWILADKRPTAWFLPSIRAANVMAASLRK--------AGKSVVVLNR----KTFEREYPTIKQKKPD 225 (440)
T ss_dssp CCSS-------SCHHHHHCCSCEEEECSCHHHHHHHHHHHHH--------TTCCEEECCS----SSCC--------CCCS
T ss_pred HHHH-------HHHHHHhcCCCEEEEeCCHHHHHHHHHHHHH--------cCCCEEEecc----hhHHHHHhhhcCCCce
Confidence 0001 1222334678999999999999999998876 2457899999 4789999999999999
Q ss_pred EEEeccccccccccCCccEEEE-------------------eCCCCCHhhHHHHhccCCCC-CCCceEEEEee-CCcchh
Q 002135 586 GVAATNALELGIDVGHIDVTLH-------------------LGFPGSIASLWQQAGRSGRR-ERPSLAVYVAF-EGPLDQ 644 (961)
Q Consensus 586 vLVAT~aLe~GIDIp~vd~VI~-------------------~~~P~s~~sy~QR~GRAGR~-g~~g~~i~l~~-~~~~d~ 644 (961)
|||||+++++|||+| +++||+ ++.|.+.++|+||+||+||. |++|.|++++. .++.+.
T Consensus 226 vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~ 304 (440)
T 1yks_A 226 FILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNA 304 (440)
T ss_dssp EEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCT
T ss_pred EEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhh
Confidence 999999999999999 999996 88899999999999999997 68999998863 234444
Q ss_pred HHHhchHHhh
Q 002135 645 YFMKYPEKLF 654 (961)
Q Consensus 645 ~~~~~~e~l~ 654 (961)
.+++.++..+
T Consensus 305 ~~l~~l~~~~ 314 (440)
T 1yks_A 305 HHVCWLEASM 314 (440)
T ss_dssp TBHHHHHHHH
T ss_pred hhhhhhhHHh
Confidence 4444444444
No 46
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=3.4e-35 Score=356.50 Aligned_cols=306 Identities=15% Similarity=0.109 Sum_probs=203.7
Q ss_pred HHHhCCCC-----CCcHHHH-----HHHHHHh------CCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccH
Q 002135 247 ALKSTGIS-----KLYSHQA-----ESIMASL------AGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTK 310 (961)
Q Consensus 247 ~L~~~g~~-----~l~~~Q~-----~ai~~il------~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~Ptr 310 (961)
+|...||. .|+++|+ ++|+.++ +|+|+++++|||||||++|++|++..+.. .+.++||++||+
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~-~~~~~lilaPTr 280 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ-KRLRTAVLAPTR 280 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH-TTCCEEEEESSH
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh-CCCcEEEEccHH
Confidence 34445666 8999999 9999888 89999999999999999999999988765 367899999999
Q ss_pred HHHHHHHHHHHHhHhhCCCCccEEEEcCCCcHHHHHHHhcCCcEEEeChhHHHHhhcCCCchhHHHhhhhhhhhhhcchh
Q 002135 311 ALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTT 390 (961)
Q Consensus 311 aLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~~~r~~l~~~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~~~~~~~ 390 (961)
+||.|+++.+..+ + + . +.... +. .++||+++.+.+. +. .....+
T Consensus 281 ~La~Q~~~~l~~~----~--i--~-~~~~~-------l~-----~v~tp~~ll~~l~--~~---~l~~~l---------- 324 (673)
T 2wv9_A 281 VVAAEMAEALRGL----P--V--R-YLTPA-------VQ-----REHSGNEIVDVMC--HA---TLTHRL---------- 324 (673)
T ss_dssp HHHHHHHHHTTTS----C--C--E-ECCC---------------CCCCSCCCEEEEE--HH---HHHHHH----------
T ss_pred HHHHHHHHHHhcC----C--e--e-eeccc-------cc-----ccCCHHHHHHHHH--hh---hhHHHH----------
Confidence 9999999887643 1 1 1 11110 00 1566665543221 00 010000
Q ss_pred hhhhhhcceeEEEEecchhhhcccchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCChHHHHHHHcccCCeEEEecCCC
Q 002135 391 EVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGS 470 (961)
Q Consensus 391 ~~~~~~~~i~~VVIDEaH~~~~~fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~~e~~~~L~~~~~~~~i~~~g~ 470 (961)
.....+.++++|||||+|++ +......+..+..... ...+|+|++|||++... ..+...
T Consensus 325 ~~~~~l~~l~lvViDEaH~~----~~~~~~~~~~l~~~~~---~~~~~vl~~SAT~~~~i---~~~~~~----------- 383 (673)
T 2wv9_A 325 MSPLRVPNYNLFVMDEAHFT----DPASIAARGYIATRVE---AGEAAAIFMTATPPGTS---DPFPDT----------- 383 (673)
T ss_dssp HSSSCCCCCSEEEEESTTCC----CHHHHHHHHHHHHHHH---TTSCEEEEECSSCTTCC---CSSCCC-----------
T ss_pred hcccccccceEEEEeCCccc----CccHHHHHHHHHHhcc---ccCCcEEEEcCCCChhh---hhhccc-----------
Confidence 00012334599999999997 2222233444444432 24689999999986421 111110
Q ss_pred ccceeEEEEeCCCccccccccccccccchhhhcccCCCCcHHHHHHHHHHHHHCCCcEEEEecChHHHHHHHHHHHHHHH
Q 002135 471 PCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILE 550 (961)
Q Consensus 471 p~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~k~IVF~~sr~~ae~l~~~L~~~l~ 550 (961)
.... ..+.... . . ..... ++..+.+.+.++||||++++.|+.+++.|++
T Consensus 384 ~~~i--~~v~~~~-~--------~----------~~~~~-------~l~~l~~~~~~~lVF~~s~~~~e~la~~L~~--- 432 (673)
T 2wv9_A 384 NSPV--HDVSSEI-P--------D----------RAWSS-------GFEWITDYAGKTVWFVASVKMSNEIAQCLQR--- 432 (673)
T ss_dssp SSCE--EEEECCC-C--------S----------SCCSS-------CCHHHHSCCSCEEEECSSHHHHHHHHHHHHT---
T ss_pred CCce--EEEeeec-C--------H----------HHHHH-------HHHHHHhCCCCEEEEECCHHHHHHHHHHHHh---
Confidence 0000 0000000 0 0 00001 1222334678999999999999999988865
Q ss_pred hhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEeccccccccccCCccEEEE--------------------eCC
Q 002135 551 ETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLH--------------------LGF 610 (961)
Q Consensus 551 ~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~aLe~GIDIp~vd~VI~--------------------~~~ 610 (961)
.+..+..+|| ++|+++++.|++|+++|||||+++++|||+| +++||+ +++
T Consensus 433 -----~g~~v~~lHg----~eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~ 502 (673)
T 2wv9_A 433 -----AGKRVIQLNR----KSYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPS 502 (673)
T ss_dssp -----TTCCEEEECS----SSHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSE
T ss_pred -----CCCeEEEeCh----HHHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccC
Confidence 3457899999 3899999999999999999999999999999 999998 568
Q ss_pred CCCHhhHHHHhccCCCC-CCCceEEEEee-CCcchhHHHhchH
Q 002135 611 PGSIASLWQQAGRSGRR-ERPSLAVYVAF-EGPLDQYFMKYPE 651 (961)
Q Consensus 611 P~s~~sy~QR~GRAGR~-g~~g~~i~l~~-~~~~d~~~~~~~e 651 (961)
|.|.++|+||+||+||. |++|.+++++. .++.|..+.+.++
T Consensus 503 P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie 545 (673)
T 2wv9_A 503 AITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTE 545 (673)
T ss_dssp ECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHH
T ss_pred CCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHH
Confidence 99999999999999999 78999998864 2334443333333
No 47
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=9.3e-33 Score=332.03 Aligned_cols=349 Identities=17% Similarity=0.055 Sum_probs=230.9
Q ss_pred hCCCCCCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHHHHHHHHHHHHHhHhhCCC
Q 002135 250 STGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDA 329 (961)
Q Consensus 250 ~~g~~~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~PtraLa~qq~~~l~~l~~~~~~ 329 (961)
.+|+ .||++|..+++.+++|+ |+.++||+|||++|.+|++...+. +..+++|+||++||.|..+.+..+...++
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~--g~~v~VvTpTreLA~Qdae~m~~l~~~lG- 180 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA--GNGVHIVTVNDYLAKRDSEWMGRVHRFLG- 180 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT--TSCEEEEESSHHHHHHHHHHHHHHHHHTT-
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHHHHHHHHhhcC-
Confidence 4798 89999999999999998 999999999999999999754443 56799999999999999999999998876
Q ss_pred CccEEEEcCCCcHHHHHHHhcCCcEEEeChhHH-HHhhcCCCchhHHHhhhhhhhhhhcchhhhhhhhcceeEEEEecch
Q 002135 330 SIDIGVYDGDTTQKDRMWLRDNARLLITNPDML-HMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAH 408 (961)
Q Consensus 330 ~i~v~~~~Gd~~~~~r~~l~~~~~IlItTPe~L-~~~lL~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~i~~VVIDEaH 408 (961)
+++++..|+.+..++. ...+++|+++||++| .+.|..+.. . ......+..+.++||||||
T Consensus 181 -Lsv~~i~gg~~~~~r~-~~y~~DIvygTpgrlgfDyLrD~m~-~----------------~~~~l~lr~l~~lIVDEaD 241 (922)
T 1nkt_A 181 -LQVGVILATMTPDERR-VAYNADITYGTNNEFGFDYLRDNMA-H----------------SLDDLVQRGHHYAIVDEVD 241 (922)
T ss_dssp -CCEEECCTTCCHHHHH-HHHHSSEEEEEHHHHHHHHHHHTTC-S----------------SGGGCCCCCCCEEEETTHH
T ss_pred -CeEEEEeCCCCHHHHH-HhcCCCEEEECchHhhHHHHHhhhh-c----------------cHhhhccCCCCEEEEeChH
Confidence 7888888877665543 334699999999998 444421100 0 0001122345999999999
Q ss_pred hhhcc-----------------cchHHHHHHHHHHHHhhc-ccCCCCcEE-----------------EeccCCCChHHHH
Q 002135 409 AYKGA-----------------FGCHTALILRRLCRLCSH-VYGSDPSFV-----------------FSTATSANPREHC 453 (961)
Q Consensus 409 ~~~~~-----------------fg~~~~~ilrrL~~~~~~-~~~~~~q~I-----------------~lSATl~n~~e~~ 453 (961)
.++.+ |-..+..++..+..-... +-....|++ +.|||.+....++
T Consensus 242 smLiDeartPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i 321 (922)
T 1nkt_A 242 SILIDEARTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYL 321 (922)
T ss_dssp HHHTTGGGSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHH
T ss_pred HHHHhcCccceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHH
Confidence 98731 222333333332100000 001345666 6788865422222
Q ss_pred H------HHcccCC-----------------------------------------------eEEEec-------------
Q 002135 454 M------ELANLST-----------------------------------------------LELIQN------------- 467 (961)
Q Consensus 454 ~------~L~~~~~-----------------------------------------------~~~i~~------------- 467 (961)
. .++.... ...|..
T Consensus 322 ~~aL~A~~l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GM 401 (922)
T 1nkt_A 322 NNALKAKELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGM 401 (922)
T ss_dssp HHHHHHHHHCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEE
T ss_pred HHHHHHHHHhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhcc
Confidence 1 1211000 000110
Q ss_pred CCCccc--------eeEEEEeCCCccccccccccccccchhhhcccCCCCcHHHHHHHHHHHHHCCCcEEEEecChHHHH
Q 002135 468 DGSPCA--------QKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCE 539 (961)
Q Consensus 468 ~g~p~~--------~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~k~IVF~~sr~~ae 539 (961)
.|.... ...-++.-|........ +...........+...+...+......|.++||||+|++.+|
T Consensus 402 TGTa~te~~Ef~~iY~l~vv~IPtn~p~~R~-------d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE 474 (922)
T 1nkt_A 402 TGTAQTEAAELHEIYKLGVVSIPTNMPMIRE-------DQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSE 474 (922)
T ss_dssp ESCCGGGHHHHHHHHCCEEEECCCSSCCCCE-------ECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHH
T ss_pred ccCchhHHHHHHHHhCCCeEEeCCCCCcccc-------cCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHH
Confidence 000000 00111222221110000 000001111223444455555555567889999999999999
Q ss_pred HHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEeccccccccccCCc-----------------
Q 002135 540 LVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHI----------------- 602 (961)
Q Consensus 540 ~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~aLe~GIDIp~v----------------- 602 (961)
.++..|++ .+..+.++||.+.+.++..+.++++.| .|+||||+++||+||+.+
T Consensus 475 ~Ls~~L~~--------~Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~ 544 (922)
T 1nkt_A 475 YLSRQFTK--------RRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLD 544 (922)
T ss_dssp HHHHHHHH--------TTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCC
T ss_pred HHHHHHHH--------CCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhcccc
Confidence 99998876 345678899998877887788888877 699999999999999875
Q ss_pred -----------------------------------cEEEEeCCCCCHhhHHHHhccCCCCCCCceEEEEeeCC
Q 002135 603 -----------------------------------DVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEG 640 (961)
Q Consensus 603 -----------------------------------d~VI~~~~P~s~~sy~QR~GRAGR~g~~g~~i~l~~~~ 640 (961)
.+||+++.|.|...|.||+||+||.|.+|.++++++..
T Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSle 617 (922)
T 1nkt_A 545 PVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLG 617 (922)
T ss_dssp TTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETT
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechh
Confidence 49999999999999999999999999999998877543
No 48
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=5.4e-33 Score=325.32 Aligned_cols=278 Identities=16% Similarity=0.096 Sum_probs=185.9
Q ss_pred HHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHHHHHHHHHHHHHhHhhCCCCccEEEEcCCCcHH
Q 002135 264 IMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQK 343 (961)
Q Consensus 264 i~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~PtraLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~~ 343 (961)
...+.+|+++++++|||||||++|++|+++.+.. .+.++||++||++|+.|+.+++.. ..+....+.....
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~-~~~~~lvl~Ptr~La~Q~~~~l~g--------~~v~~~~~~~~~~ 85 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ-QRLRTAVLAPTRVVAAEMAEALRG--------LPVRYQTSAVQRE 85 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH-TTCCEEEEECSHHHHHHHHHHTTT--------SCEEECC------
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEECchHHHHHHHHHHhcC--------ceEeEEecccccC
Confidence 3446678999999999999999999999988765 367899999999999999988862 2233222221110
Q ss_pred HHHHHhcCCcEEEeChhHHHHhhcCCCchhHHHhhhhhhhhhhcchhhhhhhhcceeEEEEecchhhhcccchHHHHHHH
Q 002135 344 DRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILR 423 (961)
Q Consensus 344 ~r~~l~~~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~i~~VVIDEaH~~~~~fg~~~~~ilr 423 (961)
-..+..+.++|.+.+...++.. ..+.++ ++|||||||++...+......+.
T Consensus 86 ----~t~~~~i~~~~~~~l~~~l~~~-----~~l~~~-------------------~~iViDEaH~~~~~~~~~~~~~~- 136 (459)
T 2z83_A 86 ----HQGNEIVDVMCHATLTHRLMSP-----NRVPNY-------------------NLFVMDEAHFTDPASIAARGYIA- 136 (459)
T ss_dssp ------CCCSEEEEEHHHHHHHHHSC-----C-CCCC-------------------SEEEESSTTCCSHHHHHHHHHHH-
T ss_pred ----CCCCcEEEEEchHHHHHHhhcc-----ccccCC-------------------cEEEEECCccCCchhhHHHHHHH-
Confidence 1123456677777664433211 123444 99999999986322222222222
Q ss_pred HHHHHhhcccCCCCcEEEeccCCCChHHHHHHHcccCCeEEEecCCCccceeEEEEeCCCccccccccccccccchhhhc
Q 002135 424 RLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNA 503 (961)
Q Consensus 424 rL~~~~~~~~~~~~q~I~lSATl~n~~e~~~~L~~~~~~~~i~~~g~p~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~ 503 (961)
... ...++|+|++|||++.... .+... ..| . ....... .
T Consensus 137 ---~~~---~~~~~~~il~SAT~~~~~~---~~~~~---------~~p--i--~~~~~~~-~------------------ 175 (459)
T 2z83_A 137 ---TKV---ELGEAAAIFMTATPPGTTD---PFPDS---------NAP--I--HDLQDEI-P------------------ 175 (459)
T ss_dssp ---HHH---HTTSCEEEEECSSCTTCCC---SSCCC---------SSC--E--EEEECCC-C------------------
T ss_pred ---HHh---ccCCccEEEEEcCCCcchh---hhccC---------CCC--e--EEecccC-C------------------
Confidence 221 1246899999999974311 11110 000 0 0000000 0
Q ss_pred ccCCCCcHHHHHHHHHHHHHCCCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCC
Q 002135 504 ANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGK 583 (961)
Q Consensus 504 ~~~~~~~~~~~~~ll~~l~~~g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~ 583 (961)
....... ..+ +.+.+.++||||++++.|+.+++.|+. .+..+..+||. +|+++++.|++|+
T Consensus 176 ~~~~~~~----~~~---l~~~~~~~LVF~~s~~~~~~l~~~L~~--------~g~~v~~lh~~----~R~~~~~~f~~g~ 236 (459)
T 2z83_A 176 DRAWSSG----YEW---ITEYAGKTVWFVASVKMGNEIAMCLQR--------AGKKVIQLNRK----SYDTEYPKCKNGD 236 (459)
T ss_dssp SSCCSSC----CHH---HHHCCSCEEEECSCHHHHHHHHHHHHH--------TTCCEEEESTT----CCCCCGGGSSSCC
T ss_pred cchhHHH----HHH---HHhcCCCEEEEeCChHHHHHHHHHHHh--------cCCcEEecCHH----HHHHHHhhccCCC
Confidence 0000011 111 223567999999999999999998876 34578899984 7888999999999
Q ss_pred ceEEEeccccccccccCCccEEEE--------------------eCCCCCHhhHHHHhccCCCCCC-CceEEEEeeCC
Q 002135 584 LCGVAATNALELGIDVGHIDVTLH--------------------LGFPGSIASLWQQAGRSGRRER-PSLAVYVAFEG 640 (961)
Q Consensus 584 ~~vLVAT~aLe~GIDIp~vd~VI~--------------------~~~P~s~~sy~QR~GRAGR~g~-~g~~i~l~~~~ 640 (961)
.+|||||+++++|||+|+ ++||+ ++.|.|.++|+||+|||||.|+ +|.+++++...
T Consensus 237 ~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 237 WDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp CSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred ceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 999999999999999999 99999 6699999999999999999987 89998887654
No 49
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=7.4e-34 Score=340.09 Aligned_cols=279 Identities=18% Similarity=0.149 Sum_probs=193.5
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHHHHHHHHHHHHHhHhhCCCCccEE
Q 002135 255 KLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIG 334 (961)
Q Consensus 255 ~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~PtraLa~qq~~~l~~l~~~~~~~i~v~ 334 (961)
.++++|.++++.+.++++++++||||||||++|.+|+++. +.++||++|||+||.|+.+++.+... ..++
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~-----g~~vLVl~PTReLA~Qia~~l~~~~g-----~~vg 286 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ-----GYKVLVLNPSVAATLGFGAYMSKAHG-----IDPN 286 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT-----TCCEEEEESCHHHHHHHHHHHHHHHS-----CCCE
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC-----CCeEEEEcchHHHHHHHHHHHHHHhC-----CCee
Confidence 5677888888888889999999999999999999998862 56899999999999999998766542 3345
Q ss_pred EEcCCCcHHHHHHHhcCCcEEEeChhHHHHhhcCCCchhHHHhhhhhhhhhhcchhhhhhhhcceeEEEEecchhhhccc
Q 002135 335 VYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAF 414 (961)
Q Consensus 335 ~~~Gd~~~~~r~~l~~~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~i~~VVIDEaH~~~~~f 414 (961)
...|... ...+++|+|+||++|... . ...+.++ ++|||||||++...|
T Consensus 287 ~~vG~~~------~~~~~~IlV~TPGrLl~~-----~--~l~l~~l-------------------~~lVlDEAH~l~~~~ 334 (666)
T 3o8b_A 287 IRTGVRT------ITTGAPVTYSTYGKFLAD-----G--GCSGGAY-------------------DIIICDECHSTDSTT 334 (666)
T ss_dssp EECSSCE------ECCCCSEEEEEHHHHHHT-----T--SCCTTSC-------------------SEEEETTTTCCSHHH
T ss_pred EEECcEe------ccCCCCEEEECcHHHHhC-----C--CcccCcc-------------------cEEEEccchhcCccH
Confidence 5566543 345689999999997321 0 1123334 999999999865434
Q ss_pred chHHHHHHHHHHHHhhcccCCCCcEEEeccCCCChHHHHHHHcccCCeEEEecCCCccceeEEEEeCCCccccccccccc
Q 002135 415 GCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQ 494 (961)
Q Consensus 415 g~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~~e~~~~L~~~~~~~~i~~~g~p~~~~~~~l~~p~~~~~~~~~~~~ 494 (961)
...+. .+.+.... .....++++|||+++... ........+... +.+...
T Consensus 335 ~~~l~----~Il~~l~~--~~~~llil~SAT~~~~i~-----~~~p~i~~v~~~-----------~~~~i~--------- 383 (666)
T 3o8b_A 335 ILGIG----TVLDQAET--AGARLVVLATATPPGSVT-----VPHPNIEEVALS-----------NTGEIP--------- 383 (666)
T ss_dssp HHHHH----HHHHHTTT--TTCSEEEEEESSCTTCCC-----CCCTTEEEEECB-----------SCSSEE---------
T ss_pred HHHHH----HHHHhhhh--cCCceEEEECCCCCcccc-----cCCcceEEEeec-----------ccchhH---------
Confidence 43333 34333321 112236778999975210 000000000000 000000
Q ss_pred cccchhhhcccCCCCcHHHHHHHHHHHHHCCCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHH
Q 002135 495 TDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRR 574 (961)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ 574 (961)
. . ..... +. ...+.++||||++++.|+.+++.|++ .+..+..+||++++++
T Consensus 384 -----~---~---~~~~~-----l~--~~~~~~vLVFv~Tr~~ae~la~~L~~--------~g~~v~~lHG~l~q~e--- 434 (666)
T 3o8b_A 384 -----F---Y---GKAIP-----IE--AIRGGRHLIFCHSKKKCDELAAKLSG--------LGINAVAYYRGLDVSV--- 434 (666)
T ss_dssp -----E---T---TEEEC-----GG--GSSSSEEEEECSCHHHHHHHHHHHHT--------TTCCEEEECTTSCGGG---
T ss_pred -----H---H---Hhhhh-----hh--hccCCcEEEEeCCHHHHHHHHHHHHh--------CCCcEEEecCCCCHHH---
Confidence 0 0 00000 00 11467999999999999999998865 3457899999999875
Q ss_pred HHHHHhCCCceEEEeccccccccccCCccEEE----------EeC-----------CCCCHhhHHHHhccCCCCCCCceE
Q 002135 575 IERDFFGGKLCGVAATNALELGIDVGHIDVTL----------HLG-----------FPGSIASLWQQAGRSGRRERPSLA 633 (961)
Q Consensus 575 ie~~f~~G~~~vLVAT~aLe~GIDIp~vd~VI----------~~~-----------~P~s~~sy~QR~GRAGR~g~~g~~ 633 (961)
|+++..+|||||+++++|||++ +++|| ||| .|.|.++|+||+||+|| |++|.
T Consensus 435 ----r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~- 507 (666)
T 3o8b_A 435 ----IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI- 507 (666)
T ss_dssp ----SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-
T ss_pred ----HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE-
Confidence 4566679999999999999997 99999 566 89999999999999999 89999
Q ss_pred EEEeeCCcc
Q 002135 634 VYVAFEGPL 642 (961)
Q Consensus 634 i~l~~~~~~ 642 (961)
+.++...+.
T Consensus 508 i~lvt~~e~ 516 (666)
T 3o8b_A 508 YRFVTPGER 516 (666)
T ss_dssp EEESCCCCB
T ss_pred EEEEecchh
Confidence 777655443
No 50
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.98 E-value=2.8e-31 Score=320.92 Aligned_cols=333 Identities=12% Similarity=0.085 Sum_probs=186.6
Q ss_pred CCcHHHHHHHHHHhC----C-CcEEEEecCCchhHHHHHHHHHHHHhcC-------CCCeEEEEcccHHHHHHHH-HHHH
Q 002135 255 KLYSHQAESIMASLA----G-KNVVVATMTSSGKSLCYNLPVLEALSHD-------LSSSALYMFPTKALAQDQL-RALL 321 (961)
Q Consensus 255 ~l~~~Q~~ai~~il~----G-~~vIv~apTGSGKTla~~Lpil~~l~~~-------~~~~aLvl~PtraLa~qq~-~~l~ 321 (961)
.|+++|.+|++.+++ | +++++++|||||||++++..+...+... .+.++|||+||++|+.|+. +.++
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 799999999999875 4 6799999999999999766555554444 5689999999999999998 6665
Q ss_pred HhHhhCCCCccEEEEcCCCcHHHHHHHhcCCcEEEeChhHHHHhhcCCCchhHHHhhhhhhhhhhcchhhhhhhhcceeE
Q 002135 322 AMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRF 401 (961)
Q Consensus 322 ~l~~~~~~~i~v~~~~Gd~~~~~r~~l~~~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~i~~ 401 (961)
.+. ..+..+.+.. ...+.+|+|+||++|...+.. ..+ +..+ ....+++
T Consensus 258 ~~~------~~~~~~~~~~-------~~~~~~I~v~T~~~l~~~~~~--~~~---~~~~--------------~~~~~~l 305 (590)
T 3h1t_A 258 PFG------DARHKIEGGK-------VVKSREIYFAIYQSIASDERR--PGL---YKEF--------------PQDFFDL 305 (590)
T ss_dssp TTC------SSEEECCC---------CCSSCSEEEEEGGGC--------CCG---GGGS--------------CTTSCSE
T ss_pred hcc------hhhhhhhccC-------CCCCCcEEEEEhhhhcccccc--ccc---cccC--------------CCCccCE
Confidence 442 2334433321 334689999999998654210 011 1111 1123499
Q ss_pred EEEecchhhhcccchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCChH-HHHHHHcccCCeEEE----ecCCCccceeE
Q 002135 402 VVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPR-EHCMELANLSTLELI----QNDGSPCAQKL 476 (961)
Q Consensus 402 VVIDEaH~~~~~fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~~-e~~~~L~~~~~~~~i----~~~g~p~~~~~ 476 (961)
|||||||++....+..+..+++.+ ...++|++|||+.+.. .....+++......- ..++...+...
T Consensus 306 vIiDEaH~~~~~~~~~~~~il~~~---------~~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~ 376 (590)
T 3h1t_A 306 IIIDECHRGSARDNSNWREILEYF---------EPAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRV 376 (590)
T ss_dssp EEESCCC---------CHHHHHHS---------TTSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEE
T ss_pred EEEECCccccccchHHHHHHHHhC---------CcceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEE
Confidence 999999998653223333333322 2368999999987543 223334443211110 00111111111
Q ss_pred EEEeCCCcccccccccccc--ccchhhhcccCC---------CCcHHHHHHHHHHHH---HCCCcEEEEecChHHHHHHH
Q 002135 477 FVLWNPTSCLRSVLNKSQT--DMDDTRNAANKT---------SSPISEVSYLFAEMV---QHGLRCIAFCRSRKLCELVL 542 (961)
Q Consensus 477 ~~l~~p~~~~~~~~~~~~~--~~~~~~~~~~~~---------~~~~~~~~~ll~~l~---~~g~k~IVF~~sr~~ae~l~ 542 (961)
..+................ ............ ......+...+.... ..+.++||||++++.|+.++
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~ 456 (590)
T 3h1t_A 377 HRVISEVDAAGWRPSKGDVDRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMR 456 (590)
T ss_dssp EEEEETTCC-----------------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHH
T ss_pred EEeeeeeeccccccccccccccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHH
Confidence 1110000000000000000 000000000000 011112222232222 23479999999999999999
Q ss_pred HHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCce---EEEeccccccccccCCccEEEEeCCCCCHhhHHH
Q 002135 543 SYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLC---GVAATNALELGIDVGHIDVTLHLGFPGSIASLWQ 619 (961)
Q Consensus 543 ~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~---vLVAT~aLe~GIDIp~vd~VI~~~~P~s~~sy~Q 619 (961)
+.|++............+..+||+++ ++|++++++|++|+.+ +||||+++++|||+|++++||+++.|.|...|+|
T Consensus 457 ~~L~~~~~~~~~~~~~~~~~i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q 535 (590)
T 3h1t_A 457 RALNNLNSDLSRKHPDYVARVTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQ 535 (590)
T ss_dssp HHHHHHTHHHHTTCTTSEEECSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHH
T ss_pred HHHHHhhhhhhccCCCeEEEEeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHH
Confidence 99987544322222334777888865 4799999999998866 8899999999999999999999999999999999
Q ss_pred HhccCCCCCC
Q 002135 620 QAGRSGRRER 629 (961)
Q Consensus 620 R~GRAGR~g~ 629 (961)
|+||+||.+.
T Consensus 536 ~iGR~~R~~~ 545 (590)
T 3h1t_A 536 IVGRGTRLRE 545 (590)
T ss_dssp HHTTSCCCBG
T ss_pred HHhhhcccCc
Confidence 9999999874
No 51
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.97 E-value=4.9e-32 Score=314.75 Aligned_cols=270 Identities=17% Similarity=0.103 Sum_probs=180.0
Q ss_pred CCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHHHHHHHHHHHHHhHhhCCCCccEEEEcCCCcHHHHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWL 348 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~PtraLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~~~r~~l 348 (961)
+|+++++++|||||||++|++|+++.+.. .+.+++|++||++|+.|+.+.+. ++.+....|.... ..
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~-~g~~~lvl~Pt~~La~Q~~~~~~--------~~~v~~~~~~~~~----~~ 67 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK-KRLRTVILAPTRVVASEMYEALR--------GEPIRYMTPAVQS----ER 67 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTT--------TSCEEEC------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh-CCCCEEEECcHHHHHHHHHHHhC--------CCeEEEEecCccc----cC
Confidence 47899999999999999999999966654 35799999999999999887764 2445555554221 11
Q ss_pred hcCCcEEEeChhHHHHhhcCCCchhHHHhhhhhhhhhhcchhhhhhhhcceeEEEEecchhhhcccchHHHHHHHHHHHH
Q 002135 349 RDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRL 428 (961)
Q Consensus 349 ~~~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~i~~VVIDEaH~~~~~fg~~~~~ilrrL~~~ 428 (961)
..+..+.+.|.+.+...++. ...+.++ ++|||||+|++ +.+....+..+...
T Consensus 68 ~~~~~~~~~~~~~l~~~l~~-----~~~~~~l-------------------~~vViDEaH~~----~~~~~~~~~~l~~~ 119 (431)
T 2v6i_A 68 TGNEIVDFMCHSTFTMKLLQ-----GVRVPNY-------------------NLYIMDEAHFL----DPASVAARGYIETR 119 (431)
T ss_dssp -CCCSEEEEEHHHHHHHHHH-----TCCCCCC-------------------SEEEEESTTCC----SHHHHHHHHHHHHH
T ss_pred CCCceEEEEchHHHHHHHhc-----CccccCC-------------------CEEEEeCCccC----CccHHHHHHHHHHH
Confidence 12345666677766433321 1113444 99999999996 33333344444444
Q ss_pred hhcccCCCCcEEEeccCCCChHHHHHHHcccCCeEEEecCCCccceeEEEEeCCCccccccccccccccchhhhcccCCC
Q 002135 429 CSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTS 508 (961)
Q Consensus 429 ~~~~~~~~~q~I~lSATl~n~~e~~~~L~~~~~~~~i~~~g~p~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (961)
.. ..++|+|++|||+++... .+.. ...+ ........|. ....
T Consensus 120 ~~---~~~~~~l~~SAT~~~~~~---~~~~---------~~~~--i~~~~~~~~~---------------------~~~~ 161 (431)
T 2v6i_A 120 VS---MGDAGAIFMTATPPGTTE---AFPP---------SNSP--IIDEETRIPD---------------------KAWN 161 (431)
T ss_dssp HH---TTSCEEEEEESSCTTCCC---SSCC---------CSSC--CEEEECCCCS---------------------SCCS
T ss_pred hh---CCCCcEEEEeCCCCcchh---hhcC---------CCCc--eeeccccCCH---------------------HHHH
Confidence 31 347899999999975210 1110 0000 0000000000 0000
Q ss_pred CcHHHHHHHHHHHHHCCCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEE
Q 002135 509 SPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVA 588 (961)
Q Consensus 509 ~~~~~~~~ll~~l~~~g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLV 588 (961)
. ++..+.+.+.++||||++++.|+.+++.|++ .+..+..+||+ +|++++++|++|+++|||
T Consensus 162 ~-------~~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~--------~~~~v~~lhg~----~r~~~~~~f~~g~~~vLV 222 (431)
T 2v6i_A 162 S-------GYEWITEFDGRTVWFVHSIKQGAEIGTCLQK--------AGKKVLYLNRK----TFESEYPKCKSEKWDFVI 222 (431)
T ss_dssp S-------CCHHHHSCSSCEEEECSSHHHHHHHHHHHHH--------TTCCEEEESTT----THHHHTTHHHHSCCSEEE
T ss_pred H-------HHHHHHcCCCCEEEEeCCHHHHHHHHHHHHH--------cCCeEEEeCCc----cHHHHHHhhcCCCCeEEE
Confidence 0 1112223467999999999999999998876 24578999996 688899999999999999
Q ss_pred eccccccccccCCccE-----------------EEEeCCCCCHhhHHHHhccCCCCCCCceEEEEe
Q 002135 589 ATNALELGIDVGHIDV-----------------TLHLGFPGSIASLWQQAGRSGRRERPSLAVYVA 637 (961)
Q Consensus 589 AT~aLe~GIDIp~vd~-----------------VI~~~~P~s~~sy~QR~GRAGR~g~~g~~i~l~ 637 (961)
||+++++|||+| ++. ||+++.|.+.++|+||+||+||.|..+.+++++
T Consensus 223 aT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~ 287 (431)
T 2v6i_A 223 TTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAY 287 (431)
T ss_dssp ECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEE
T ss_pred ECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEE
Confidence 999999999999 554 678899999999999999999998544443333
No 52
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.97 E-value=8.4e-31 Score=317.18 Aligned_cols=274 Identities=16% Similarity=0.120 Sum_probs=191.3
Q ss_pred HHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHHHHHHHHHHHHHhHhhCCCCccEEEEcCCCcH
Q 002135 263 SIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQ 342 (961)
Q Consensus 263 ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~PtraLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~ 342 (961)
.....++|++++++||||||||+ +++..+... ...+|++|||+||.|+++++.+. ++.++...|+...
T Consensus 148 p~ar~l~rk~vlv~apTGSGKT~----~al~~l~~~--~~gl~l~PtR~LA~Qi~~~l~~~------g~~v~lltG~~~~ 215 (677)
T 3rc3_A 148 PDARAMQRKIIFHSGPTNSGKTY----HAIQKYFSA--KSGVYCGPLKLLAHEIFEKSNAA------GVPCDLVTGEERV 215 (677)
T ss_dssp HHHHTSCCEEEEEECCTTSSHHH----HHHHHHHHS--SSEEEEESSHHHHHHHHHHHHHT------TCCEEEECSSCEE
T ss_pred HHHHhcCCCEEEEEcCCCCCHHH----HHHHHHHhc--CCeEEEeCHHHHHHHHHHHHHhc------CCcEEEEECCeeE
Confidence 33456789999999999999998 445555443 34599999999999999998775 3668888887543
Q ss_pred HHHHHHhcCCcEEEeChhHHHHhhcCCCchhHHHhhhhhhhhhhcchhhhhhhhcceeEEEEecchhhhc-ccchHHHHH
Q 002135 343 KDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKG-AFGCHTALI 421 (961)
Q Consensus 343 ~~r~~l~~~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~i~~VVIDEaH~~~~-~fg~~~~~i 421 (961)
.. ..-....+++++|++++. ....+ ++|||||+|++.+ +||..+..+
T Consensus 216 iv-~TpGr~~~il~~T~e~~~------------l~~~v-------------------~lvVIDEaH~l~d~~~g~~~~~~ 263 (677)
T 3rc3_A 216 TV-QPNGKQASHVSCTVEMCS------------VTTPY-------------------EVAVIDEIQMIRDPARGWAWTRA 263 (677)
T ss_dssp CC-STTCCCCSEEEEEGGGCC------------SSSCE-------------------EEEEECSGGGGGCTTTHHHHHHH
T ss_pred Ee-cCCCcccceeEecHhHhh------------hcccC-------------------CEEEEecceecCCccchHHHHHH
Confidence 10 000012567777776542 12233 9999999999976 488877766
Q ss_pred HHHHHHHhhcccCCCCcEEEeccCCCChHHHHHHHcccCCeEEEecCCCccceeEEEEeCCCccccccccccccccchhh
Q 002135 422 LRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTR 501 (961)
Q Consensus 422 lrrL~~~~~~~~~~~~q~I~lSATl~n~~e~~~~L~~~~~~~~i~~~g~p~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~ 501 (961)
+.+++ ....+++++|||.+.....+... + ....+.. ..+..... .
T Consensus 264 l~~l~-------~~~i~il~~SAT~~~i~~l~~~~-~-~~~~v~~-~~r~~~l~---------~---------------- 308 (677)
T 3rc3_A 264 LLGLC-------AEEVHLCGEPAAIDLVMELMYTT-G-EEVEVRD-YKRLTPIS---------V---------------- 308 (677)
T ss_dssp HHHCC-------EEEEEEEECGGGHHHHHHHHHHH-T-CCEEEEE-CCCSSCEE---------E----------------
T ss_pred HHccC-------ccceEEEeccchHHHHHHHHHhc-C-CceEEEE-eeecchHH---------H----------------
Confidence 65543 13568999999953322222221 2 1122211 11110000 0
Q ss_pred hcccCCCCcHHHHHHHHHHHHHCCCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhC
Q 002135 502 NAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFG 581 (961)
Q Consensus 502 ~~~~~~~~~~~~~~~ll~~l~~~g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~ 581 (961)
....... +.......||||++++.++.+++.|++ .+..+..+||+|++++|+++++.|++
T Consensus 309 --~~~~l~~----------l~~~~~g~iIf~~s~~~ie~la~~L~~--------~g~~v~~lHG~L~~~~R~~~~~~F~~ 368 (677)
T 3rc3_A 309 --LDHALES----------LDNLRPGDCIVCFSKNDIYSVSRQIEI--------RGLESAVIYGSLPPGTKLAQAKKFND 368 (677)
T ss_dssp --CSSCCCS----------GGGCCTTEEEECSSHHHHHHHHHHHHH--------TTCCCEEECTTSCHHHHHHHHHHHHC
T ss_pred --HHHHHHH----------HHhcCCCCEEEEcCHHHHHHHHHHHHh--------cCCCeeeeeccCCHHHHHHHHHHHHc
Confidence 0000000 001133568999999999999988876 24578999999999999999999999
Q ss_pred --CCceEEEeccccccccccCCccEEEEeCC--------------CCCHhhHHHHhccCCCCCCC---ceEEEE
Q 002135 582 --GKLCGVAATNALELGIDVGHIDVTLHLGF--------------PGSIASLWQQAGRSGRRERP---SLAVYV 636 (961)
Q Consensus 582 --G~~~vLVAT~aLe~GIDIp~vd~VI~~~~--------------P~s~~sy~QR~GRAGR~g~~---g~~i~l 636 (961)
|+++|||||+++++|||+ ++++||++|. |.|.++|+||+|||||.|.. |.++++
T Consensus 369 ~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l 441 (677)
T 3rc3_A 369 PNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTM 441 (677)
T ss_dssp TTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEES
T ss_pred cCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEE
Confidence 899999999999999999 8999999999 88999999999999999865 555543
No 53
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.96 E-value=4.9e-29 Score=315.58 Aligned_cols=353 Identities=16% Similarity=0.146 Sum_probs=221.9
Q ss_pred CCcHHHHHHHHHHhC--CCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHHHHHHHHHHHHHhHhhCCCCcc
Q 002135 255 KLYSHQAESIMASLA--GKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASID 332 (961)
Q Consensus 255 ~l~~~Q~~ai~~il~--G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~PtraLa~qq~~~l~~l~~~~~~~i~ 332 (961)
+|+|||.+++..++. +.++|++++||+|||++++..+...+..+...++|||+|+ +|+.|+.+++.+.+ + +.
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f---~--l~ 226 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRF---N--LR 226 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHS---C--CC
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHh---C--CC
Confidence 799999999999876 4589999999999999998888877776666789999999 99999999997654 2 55
Q ss_pred EEEEcCCCcHHHHHH---HhcCCcEEEeChhHHHHhhcCCCchhHHHhhhhhhhhhhcchhhhhhhhcceeEEEEecchh
Q 002135 333 IGVYDGDTTQKDRMW---LRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHA 409 (961)
Q Consensus 333 v~~~~Gd~~~~~r~~---l~~~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~i~~VVIDEaH~ 409 (961)
+.+++|+........ .....+|+|+|++.+.... .. ...+.. ..+++|||||||+
T Consensus 227 v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~----~~-~~~l~~-----------------~~~dlVIvDEAH~ 284 (968)
T 3dmq_A 227 FALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSK----QR-LEHLCE-----------------AEWDLLVVDEAHH 284 (968)
T ss_dssp CEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTST----TT-THHHHT-----------------SCCCEEEECCSSC
T ss_pred EEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCH----HH-HHHhhh-----------------cCCCEEEehhhHh
Confidence 667776543322211 1124689999999885321 11 111111 1239999999999
Q ss_pred hhcc--cchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCC--hHHHHHHH--cccC-----------------------
Q 002135 410 YKGA--FGCHTALILRRLCRLCSHVYGSDPSFVFSTATSAN--PREHCMEL--ANLS----------------------- 460 (961)
Q Consensus 410 ~~~~--fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n--~~e~~~~L--~~~~----------------------- 460 (961)
+... ........+..+ + ...++++++|||+-. ..+....+ ....
T Consensus 285 ~kn~~~~~s~~~~~l~~L---~----~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~ 357 (968)
T 3dmq_A 285 LVWSEDAPSREYQAIEQL---A----EHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVA 357 (968)
T ss_dssp CCCBTTBCCHHHHHHHHH---H----TTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCcchHHHHHHHHH---h----hcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHH
Confidence 9652 112222333333 2 234578999999842 21111110 0000
Q ss_pred ---Ce-E----------------------------------------------------EEec-----CCCccce-eEEE
Q 002135 461 ---TL-E----------------------------------------------------LIQN-----DGSPCAQ-KLFV 478 (961)
Q Consensus 461 ---~~-~----------------------------------------------------~i~~-----~g~p~~~-~~~~ 478 (961)
.. . ++.. .+-|... ....
T Consensus 358 ~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~ 437 (968)
T 3dmq_A 358 MLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK 437 (968)
T ss_dssp TTTTSCCCCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEE
T ss_pred HHhccCCCCHHHHHHHHHHhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeee
Confidence 00 0 0000 0000000 0000
Q ss_pred EeCCCccccccc-----c-ccc--------cccchhhh-------cccCCCCcHHHHHHHHHHHHHCCCcEEEEecChHH
Q 002135 479 LWNPTSCLRSVL-----N-KSQ--------TDMDDTRN-------AANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKL 537 (961)
Q Consensus 479 l~~p~~~~~~~~-----~-~~~--------~~~~~~~~-------~~~~~~~~~~~~~~ll~~l~~~g~k~IVF~~sr~~ 537 (961)
+..+........ . ... ........ .......+...+..++.. ..+.++||||++++.
T Consensus 438 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~ 515 (968)
T 3dmq_A 438 LPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS--HRSQKVLVICAKAAT 515 (968)
T ss_dssp ECCCHHHHHHHHHHHHTTCCSSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH--TSSSCCCEECSSTHH
T ss_pred cCCCHHHHHHHHHHhhhhhhhhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh--CCCCCEEEEeCcHHH
Confidence 000000000000 0 000 00000000 001112223333333333 257899999999999
Q ss_pred HHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCC--ceEEEeccccccccccCCccEEEEeCCCCCHh
Q 002135 538 CELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGK--LCGVAATNALELGIDVGHIDVTLHLGFPGSIA 615 (961)
Q Consensus 538 ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~--~~vLVAT~aLe~GIDIp~vd~VI~~~~P~s~~ 615 (961)
++.++..|++. .+..+..+||++++.+|.++++.|++|+ +++||||+++++|+|+|++++||++++|++..
T Consensus 516 ~~~l~~~L~~~-------~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~ 588 (968)
T 3dmq_A 516 ALQLEQVLRER-------EGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPD 588 (968)
T ss_dssp HHHHHHHHHTT-------TCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHH
T ss_pred HHHHHHHHHHH-------cCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHH
Confidence 99998887641 2457899999999999999999999998 99999999999999999999999999999999
Q ss_pred hHHHHhccCCCCCCCceEEEE--eeCCcchhHHHhchH
Q 002135 616 SLWQQAGRSGRRERPSLAVYV--AFEGPLDQYFMKYPE 651 (961)
Q Consensus 616 sy~QR~GRAGR~g~~g~~i~l--~~~~~~d~~~~~~~e 651 (961)
.|.||+||+||.|+.+.++++ ...+..+..+.+...
T Consensus 589 ~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~ 626 (968)
T 3dmq_A 589 LLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYH 626 (968)
T ss_dssp HHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHH
T ss_pred HHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHHH
Confidence 999999999999998855443 445555665555443
No 54
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.96 E-value=1.2e-28 Score=291.85 Aligned_cols=338 Identities=14% Similarity=0.129 Sum_probs=217.2
Q ss_pred CCcHHHHHHHHHH----hCCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHHHHHHHHHHHHHhHhhCCCC
Q 002135 255 KLYSHQAESIMAS----LAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDAS 330 (961)
Q Consensus 255 ~l~~~Q~~ai~~i----l~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~PtraLa~qq~~~l~~l~~~~~~~ 330 (961)
.|+|||.++++.+ ..++++|++++||+|||++++..+..........++|||+| .+|+.|+.++++++.. .
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qw~~e~~~~~~----~ 111 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICP-LSVLKNWEEELSKFAP----H 111 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEEC-STTHHHHHHHHHHHCT----T
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEcc-HHHHHHHHHHHHHHCC----C
Confidence 6999999999876 36789999999999999997665555444445678999999 5688999999998754 3
Q ss_pred ccEEEEcCCCcHHHHHHHhcCCcEEEeChhHHHHhhcCCCchhHHHhhhhhhhhhhcchhhhhhhhcceeEEEEecchhh
Q 002135 331 IDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAY 410 (961)
Q Consensus 331 i~v~~~~Gd~~~~~r~~l~~~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~i~~VVIDEaH~~ 410 (961)
..+.+++|+... ......+|+|+|++++.... . +... .+++||+||||++
T Consensus 112 ~~v~~~~g~~~~----~~~~~~~ivi~t~~~l~~~~-------~--l~~~-----------------~~~~vIvDEaH~~ 161 (500)
T 1z63_A 112 LRFAVFHEDRSK----IKLEDYDIILTTYAVLLRDT-------R--LKEV-----------------EWKYIVIDEAQNI 161 (500)
T ss_dssp SCEEECSSSTTS----CCGGGSSEEEEEHHHHTTCH-------H--HHTC-----------------CEEEEEEETGGGG
T ss_pred ceEEEEecCchh----ccccCCcEEEeeHHHHhccc-------h--hcCC-----------------CcCEEEEeCcccc
Confidence 567888887632 12345799999999885321 0 2221 2399999999999
Q ss_pred hcccchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCC--hHHHHH----------------------------------
Q 002135 411 KGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSAN--PREHCM---------------------------------- 454 (961)
Q Consensus 411 ~~~fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n--~~e~~~---------------------------------- 454 (961)
.+ .+......+..+ ...+.+++|||+.. +.+...
T Consensus 162 kn-~~~~~~~~l~~l---------~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~ 231 (500)
T 1z63_A 162 KN-PQTKIFKAVKEL---------KSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEE 231 (500)
T ss_dssp SC-TTSHHHHHHHTS---------CEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHH
T ss_pred CC-HhHHHHHHHHhh---------ccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHH
Confidence 75 222332222222 13467999999832 222211
Q ss_pred --HHcccCCeEEEec-------CCCccceeEEEEeCCCccc-cccc--------cccc--cccch----------hhh--
Q 002135 455 --ELANLSTLELIQN-------DGSPCAQKLFVLWNPTSCL-RSVL--------NKSQ--TDMDD----------TRN-- 502 (961)
Q Consensus 455 --~L~~~~~~~~i~~-------~g~p~~~~~~~l~~p~~~~-~~~~--------~~~~--~~~~~----------~~~-- 502 (961)
.+.. ...+-.. ..-|... ...++.+.... .... .... ..... ...
T Consensus 232 l~~~l~--~~~lrr~k~~~~~~~~lp~~~-~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~ 308 (500)
T 1z63_A 232 LKAIIS--PFILRRTKYDKAIINDLPDKI-ETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIV 308 (500)
T ss_dssp HHHHHT--TTEECCCTTCHHHHTTSCSEE-EEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHh--hHeeeecccccchhhcCCCCe-EEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHh
Confidence 1110 0111000 0111111 11111110000 0000 0000 00000 000
Q ss_pred ----------cccCCCCcHHHHHHHHHHHHHCCCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHH
Q 002135 503 ----------AANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDR 572 (961)
Q Consensus 503 ----------~~~~~~~~~~~~~~ll~~l~~~g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR 572 (961)
.......+...+..++......+.++||||+++..++.+...|.... +..+..+||++++.+|
T Consensus 309 ~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~-------~~~~~~~~g~~~~~~R 381 (500)
T 1z63_A 309 DHPALLKGGEQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKEL-------NTEVPFLYGELSKKER 381 (500)
T ss_dssp TCTHHHHCSCCCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHH-------TCCCCEEETTSCHHHH
T ss_pred CCHHHhcCccchhhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhh-------CCCeEEEECCCCHHHH
Confidence 01122345555667777777788899999999999999988886532 3457789999999999
Q ss_pred HHHHHHHhCC-Cce-EEEeccccccccccCCccEEEEeCCCCCHhhHHHHhccCCCCCCCceE--EEEeeCCcchhHHH
Q 002135 573 RRIERDFFGG-KLC-GVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLA--VYVAFEGPLDQYFM 647 (961)
Q Consensus 573 ~~ie~~f~~G-~~~-vLVAT~aLe~GIDIp~vd~VI~~~~P~s~~sy~QR~GRAGR~g~~g~~--i~l~~~~~~d~~~~ 647 (961)
.+++++|++| ..+ +|+||+++++|+|++++++||++++|+|...|.||+||++|.|+...+ +.++..+..|..+.
T Consensus 382 ~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~ 460 (500)
T 1z63_A 382 DDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKID 460 (500)
T ss_dssp HHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTH
T ss_pred HHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHH
Confidence 9999999988 555 789999999999999999999999999999999999999999887654 44444555554433
No 55
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.96 E-value=6.5e-29 Score=265.91 Aligned_cols=217 Identities=19% Similarity=0.212 Sum_probs=171.4
Q ss_pred HHHHHHHHccCCCCCceEEeeecCCcccccccCCccccHHHHHHHHhCCCCCCcHHHHHHHHHHhCCCcEEEEecCCchh
Q 002135 204 LEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGK 283 (961)
Q Consensus 204 ~~~~~~lr~~~~~~~~iv~~~~~p~~~~~f~~l~~~L~~~l~~~L~~~g~~~l~~~Q~~ai~~il~G~~vIv~apTGSGK 283 (961)
++.++.+|+.. ...+.....|.+...|.++ +|++.+.++|++.||..|+++|.++++.+++|+|+++++||||||
T Consensus 5 ~~~~~~~~~~~---~i~~~~~~~p~~~~~f~~~--~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGK 79 (242)
T 3fe2_A 5 AQEVETYRRSK---EITVRGHNCPKPVLNFYEA--NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGK 79 (242)
T ss_dssp -CHHHHHHHHH---TEEEESSCCCCCCSSTTTT--TCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCH
T ss_pred HHHHHHHHhcC---ceEEeCCCCCCccCCHhhc--CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHH
Confidence 45566677665 3566778889888999998 699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcC------CCCeEEEEcccHHHHHHHHHHHHHhHhhCCCCccEEEEcCCCcH-HHHHHHhcCCcEEE
Q 002135 284 SLCYNLPVLEALSHD------LSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQ-KDRMWLRDNARLLI 356 (961)
Q Consensus 284 Tla~~Lpil~~l~~~------~~~~aLvl~PtraLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~-~~r~~l~~~~~IlI 356 (961)
|++|++|++..+... .+.++||++||++|+.|+.+.++++....+ +.+..+.|+... .+...+..+++|+|
T Consensus 80 T~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~I~v 157 (242)
T 3fe2_A 80 TLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACR--LKSTCIYGGAPKGPQIRDLERGVEICI 157 (242)
T ss_dssp HHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTT--CCEEEECTTSCHHHHHHHHHHCCSEEE
T ss_pred HHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcC--ceEEEEECCCChHHHHHHhcCCCCEEE
Confidence 999999999988753 367899999999999999999999988765 566666666554 44456777899999
Q ss_pred eChhHHHHhhcCCCchhHHHhhhhhhhhhhcchhhhhhhhcceeEEEEecchhhhc-ccchHHHHHHHHHHHHhhcccCC
Q 002135 357 TNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKG-AFGCHTALILRRLCRLCSHVYGS 435 (961)
Q Consensus 357 tTPe~L~~~lL~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~i~~VVIDEaH~~~~-~fg~~~~~ilrrL~~~~~~~~~~ 435 (961)
+||++|.+.+.. ....+.++ ++||+||||++.+ +|+.++..+++.+ ..
T Consensus 158 ~Tp~~l~~~l~~----~~~~~~~~-------------------~~lViDEah~l~~~~~~~~~~~i~~~~--------~~ 206 (242)
T 3fe2_A 158 ATPGRLIDFLEC----GKTNLRRT-------------------TYLVLDEADRMLDMGFEPQIRKIVDQI--------RP 206 (242)
T ss_dssp ECHHHHHHHHHH----TSCCCTTC-------------------CEEEETTHHHHHHTTCHHHHHHHHTTS--------CS
T ss_pred ECHHHHHHHHHc----CCCCcccc-------------------cEEEEeCHHHHhhhCcHHHHHHHHHhC--------Cc
Confidence 999999776521 11123444 9999999999876 4776666554433 34
Q ss_pred CCcEEEeccCCCChH-HHHHHHcc
Q 002135 436 DPSFVFSTATSANPR-EHCMELAN 458 (961)
Q Consensus 436 ~~q~I~lSATl~n~~-e~~~~L~~ 458 (961)
+.|++++|||+++.. +.+..++.
T Consensus 207 ~~q~~~~SAT~~~~~~~~~~~~l~ 230 (242)
T 3fe2_A 207 DRQTLMWSATWPKEVRQLAEDFLK 230 (242)
T ss_dssp SCEEEEEESCCCHHHHHHHHHHCS
T ss_pred cceEEEEEeecCHHHHHHHHHHCC
Confidence 679999999997654 34444443
No 56
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.95 E-value=2.4e-27 Score=251.15 Aligned_cols=192 Identities=19% Similarity=0.207 Sum_probs=149.2
Q ss_pred eecCCcccccccCCccccHHHHHHHHhCCCCCCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcC-----
Q 002135 224 EDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHD----- 298 (961)
Q Consensus 224 ~~~p~~~~~f~~l~~~L~~~l~~~L~~~g~~~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~----- 298 (961)
+.+|.+...|.++. ++++.+.++|++.||.+|+++|.++++.+++|+|+++++|||||||++|++|++..+...
T Consensus 12 ~~~p~p~~~f~~~~-~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~ 90 (228)
T 3iuy_A 12 RLIPKPTCRFKDAF-QQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISRE 90 (228)
T ss_dssp CCCCCCCCSHHHHH-TTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-------
T ss_pred CcCCCChhhHhhhh-ccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhh
Confidence 45777778888732 689999999999999999999999999999999999999999999999999999887642
Q ss_pred --CCCeEEEEcccHHHHHHHHHHHHHhHhhCCCCccEEEEcCCCc-HHHHHHHhcCCcEEEeChhHHHHhhcCCCchhHH
Q 002135 299 --LSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTT-QKDRMWLRDNARLLITNPDMLHMSILPYHGQFSR 375 (961)
Q Consensus 299 --~~~~aLvl~PtraLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~-~~~r~~l~~~~~IlItTPe~L~~~lL~~~~~~~~ 375 (961)
.+.++||++||++|+.|+.++++++.. .++.+..+.|+.. ..+...+.++++|+|+||++|...+.... .
T Consensus 91 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~----~ 163 (228)
T 3iuy_A 91 QRNGPGMLVLTPTRELALHVEAECSKYSY---KGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNS----V 163 (228)
T ss_dssp --CCCSEEEECSSHHHHHHHHHHHHHHCC---TTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTC----C
T ss_pred ccCCCcEEEEeCCHHHHHHHHHHHHHhcc---cCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCC----c
Confidence 467899999999999999999998752 2355666665544 44556677789999999999976542111 1
Q ss_pred HhhhhhhhhhhcchhhhhhhhcceeEEEEecchhhhc-ccchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCChH
Q 002135 376 ILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKG-AFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPR 450 (961)
Q Consensus 376 ~L~~l~~~~~~~~~~~~~~~~~~i~~VVIDEaH~~~~-~fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~~ 450 (961)
.+.++ ++||+||||++.+ +|+..+..+++.+ ..+.|++++|||+++..
T Consensus 164 ~~~~~-------------------~~lViDEah~~~~~~~~~~~~~i~~~~--------~~~~~~l~~SAT~~~~~ 212 (228)
T 3iuy_A 164 NLRSI-------------------TYLVIDEADKMLDMEFEPQIRKILLDV--------RPDRQTVMTSATWPDTV 212 (228)
T ss_dssp CCTTC-------------------CEEEECCHHHHHHTTCHHHHHHHHHHS--------CSSCEEEEEESCCCHHH
T ss_pred Ccccc-------------------eEEEEECHHHHhccchHHHHHHHHHhC--------CcCCeEEEEEeeCCHHH
Confidence 23344 9999999999876 4777766665433 34679999999997653
No 57
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.95 E-value=6.8e-26 Score=267.03 Aligned_cols=333 Identities=15% Similarity=0.097 Sum_probs=222.6
Q ss_pred hCCCCCCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHHHHHHHHHHHHHhHhhCCC
Q 002135 250 STGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDA 329 (961)
Q Consensus 250 ~~g~~~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~PtraLa~qq~~~l~~l~~~~~~ 329 (961)
.+|. .+++.|.-+.-.+..|+ |..+.||+|||+++.+|++-..+. +..+.+++|+..||.+-.+.+..+...++
T Consensus 71 ~lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~--G~~vhVvT~ndyLA~rdae~m~~l~~~Lg- 144 (822)
T 3jux_A 71 TLGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI--GKGVHLVTVNDYLARRDALWMGPVYLFLG- 144 (822)
T ss_dssp HTSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT--SSCEEEEESSHHHHHHHHHHHHHHHHHTT-
T ss_pred HhCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc--CCceEEEeccHHHHHhHHHHHHHHHHHhC-
Confidence 3687 69999999999999888 999999999999999999855443 56799999999999999999999999887
Q ss_pred CccEEEEcC--------------------------------------------------CCcHHHHHHHhcCCcEEEeCh
Q 002135 330 SIDIGVYDG--------------------------------------------------DTTQKDRMWLRDNARLLITNP 359 (961)
Q Consensus 330 ~i~v~~~~G--------------------------------------------------d~~~~~r~~l~~~~~IlItTP 359 (961)
+++++... +....+|+... .|+|.++|.
T Consensus 145 -lsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY-~~DItYgTn 222 (822)
T 3jux_A 145 -LRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAY-LCDVTYGTN 222 (822)
T ss_dssp -CCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHH-HSSEEEEEH
T ss_pred -CEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHh-cCCCEEccC
Confidence 55665554 11222333222 479999998
Q ss_pred hHHHHhhcCCCchhHHHhhhhhhhhhhcchhhhhhhhcceeEEEEecchhhhcc--c------c-----hHHH-------
Q 002135 360 DMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGA--F------G-----CHTA------- 419 (961)
Q Consensus 360 e~L~~~lL~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~i~~VVIDEaH~~~~~--f------g-----~~~~------- 419 (961)
.-+--..|. .|+. .........++.|.||||+|.++=+ + | ..+.
T Consensus 223 ~EfgFDYLR---------Dnm~-------~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v 286 (822)
T 3jux_A 223 NEFGFDYLR---------DNLV-------LDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIA 286 (822)
T ss_dssp HHHHHHHHH---------HTSC-------SSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHT
T ss_pred cchhhHhHH---------hhcc-------CCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHH
Confidence 765322111 1110 0000001123589999999975310 0 1 0000
Q ss_pred -------------------------------------------HHHHHHHHHhh-c------------------------
Q 002135 420 -------------------------------------------LILRRLCRLCS-H------------------------ 431 (961)
Q Consensus 420 -------------------------------------------~ilrrL~~~~~-~------------------------ 431 (961)
.++..+..... +
T Consensus 287 ~~l~~~~dy~vdek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TG 366 (822)
T 3jux_A 287 KKFVKDKDFTVDEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTG 366 (822)
T ss_dssp TSSCBTTTEEECCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSC
T ss_pred HhcCcCCcEEEEcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCC
Confidence 00111110000 0
Q ss_pred --------------------------------------ccCCCCcEEEeccCCCChHHHHHHHcccCCeEEEecCCCccc
Q 002135 432 --------------------------------------VYGSDPSFVFSTATSANPREHCMELANLSTLELIQNDGSPCA 473 (961)
Q Consensus 432 --------------------------------------~~~~~~q~I~lSATl~n~~e~~~~L~~~~~~~~i~~~g~p~~ 473 (961)
+..--.++.+||+|.....+.+..+.+.. +..|.. ..|..
T Consensus 367 R~m~grr~s~GLHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~-vv~IPt-nkp~~ 444 (822)
T 3jux_A 367 RLLPGRRYSGGLHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME-VVVIPT-HKPMI 444 (822)
T ss_dssp SCCCSCCCGGGHHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC-EEECCC-SSCCC
T ss_pred cCCCCCcCchHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe-EEEECC-CCCcc
Confidence 00111468899999988777777777743 222221 12211
Q ss_pred eeEEEEeCCCccccccccccccccchhhhcccCCCCcHHHHHHHHHHHHHCCCcEEEEecChHHHHHHHHHHHHHHHhhC
Q 002135 474 QKLFVLWNPTSCLRSVLNKSQTDMDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETA 553 (961)
Q Consensus 474 ~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~k~IVF~~sr~~ae~l~~~L~~~l~~~~ 553 (961)
... .|.. .......+...+...+......+.++||||+|++.++.+++.|++
T Consensus 445 R~d----~~d~------------------vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~------ 496 (822)
T 3jux_A 445 RKD----HDDL------------------VFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKK------ 496 (822)
T ss_dssp CEE----CCCE------------------EESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHT------
T ss_pred eee----cCcE------------------EEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHH------
Confidence 111 0100 011122344555566665556788999999999999999998865
Q ss_pred CcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEeccccccccccC--------CccEEEEeCCCCCHhhHHHHhccCC
Q 002135 554 PHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVG--------HIDVTLHLGFPGSIASLWQQAGRSG 625 (961)
Q Consensus 554 ~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~aLe~GIDIp--------~vd~VI~~~~P~s~~sy~QR~GRAG 625 (961)
.+..+..+||+..+.+|..+..+++.| .|+||||+++||+||+ +..+||+++.|.|...|.||+||+|
T Consensus 497 --~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTG 572 (822)
T 3jux_A 497 --KGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAG 572 (822)
T ss_dssp --TTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSS
T ss_pred --CCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccc
Confidence 345678899996666666666677666 6999999999999997 5569999999999999999999999
Q ss_pred CCCCCceEEEEeeCC
Q 002135 626 RRERPSLAVYVAFEG 640 (961)
Q Consensus 626 R~g~~g~~i~l~~~~ 640 (961)
|.|.+|.+++++...
T Consensus 573 RqG~~G~a~~fvsle 587 (822)
T 3jux_A 573 RQGDPGESIFFLSLE 587 (822)
T ss_dssp CSSCCCEEEEEEETT
T ss_pred cCCCCeeEEEEechh
Confidence 999999998777543
No 58
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.95 E-value=9.9e-27 Score=247.67 Aligned_cols=210 Identities=23% Similarity=0.270 Sum_probs=158.7
Q ss_pred hHHHHHHHHccCCCCCceEEeeecCCcccccccCCccccHHHHHHHHhCCCCCCcHHHHHHHHHHhCCCcEEEEecCCch
Q 002135 203 PLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSG 282 (961)
Q Consensus 203 ~~~~~~~lr~~~~~~~~iv~~~~~p~~~~~f~~l~~~L~~~l~~~L~~~g~~~l~~~Q~~ai~~il~G~~vIv~apTGSG 282 (961)
+.+.++++++..... .+.....|.++ +|++.+.+.|++.|+..|+++|.++++.+++|+++++++|||||
T Consensus 5 ~~~~~~~~~~~~~~~--------~~~~~~~f~~~--~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsG 74 (236)
T 2pl3_A 5 ERESISRLMQNYEKI--------NVNEITRFSDF--PLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSG 74 (236)
T ss_dssp HHHHHHHHHHTTTTC--------CGGGCSBGGGS--CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSC
T ss_pred cHhHHHHHHhccccC--------CCcccCCHhhc--CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCc
Confidence 346677777776421 13445679888 59999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhc-----CCCCeEEEEcccHHHHHHHHHHHHHhHhhCCCCccEEEEcCCCcHHHHHHHhcCCcEEEe
Q 002135 283 KSLCYNLPVLEALSH-----DLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLIT 357 (961)
Q Consensus 283 KTla~~Lpil~~l~~-----~~~~~aLvl~PtraLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~~~r~~l~~~~~IlIt 357 (961)
||++|++|++..+.+ ..+.++||++||++|+.|+.+.++++....+ +.+..+.|+...........+++|+|+
T Consensus 75 KT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~iiv~ 152 (236)
T 2pl3_A 75 KTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHD--FSAGLIIGGKDLKHEAERINNINILVC 152 (236)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSS--CCEEEECCC--CHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCC--eeEEEEECCCCHHHHHHhCCCCCEEEE
Confidence 999999999998764 2467899999999999999999999876443 677777887655444334467999999
Q ss_pred ChhHHHHhhcCCCchhHHHhhhhhhhhhhcchhhhhhhhcceeEEEEecchhhhc-ccchHHHHHHHHHHHHhhcccCCC
Q 002135 358 NPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKG-AFGCHTALILRRLCRLCSHVYGSD 436 (961)
Q Consensus 358 TPe~L~~~lL~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~i~~VVIDEaH~~~~-~fg~~~~~ilrrL~~~~~~~~~~~ 436 (961)
||++|...+... ....+.++ ++||+||||++.+ +|+..+..+++.+ ...
T Consensus 153 Tp~~l~~~l~~~---~~~~~~~~-------------------~~lViDEah~~~~~~~~~~~~~i~~~~--------~~~ 202 (236)
T 2pl3_A 153 TPGRLLQHMDET---VSFHATDL-------------------QMLVLDEADRILDMGFADTMNAVIENL--------PKK 202 (236)
T ss_dssp CHHHHHHHHHHC---SSCCCTTC-------------------CEEEETTHHHHHHTTTHHHHHHHHHTS--------CTT
T ss_pred CHHHHHHHHHhc---CCcccccc-------------------cEEEEeChHHHhcCCcHHHHHHHHHhC--------CCC
Confidence 999997654211 01112333 9999999999876 3665555444332 346
Q ss_pred CcEEEeccCCCChHHHHH
Q 002135 437 PSFVFSTATSANPREHCM 454 (961)
Q Consensus 437 ~q~I~lSATl~n~~e~~~ 454 (961)
.|++++|||+++..+.+.
T Consensus 203 ~~~l~~SAT~~~~~~~~~ 220 (236)
T 2pl3_A 203 RQTLLFSATQTKSVKDLA 220 (236)
T ss_dssp SEEEEEESSCCHHHHHHH
T ss_pred CeEEEEEeeCCHHHHHHH
Confidence 799999999976544333
No 59
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.95 E-value=4.4e-27 Score=254.99 Aligned_cols=194 Identities=22% Similarity=0.311 Sum_probs=150.0
Q ss_pred ccccccCCccccHHHHHHHHhCCCCCCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcC-----CCCeEE
Q 002135 230 KAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHD-----LSSSAL 304 (961)
Q Consensus 230 ~~~f~~l~~~L~~~l~~~L~~~g~~~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~-----~~~~aL 304 (961)
...|.++...+++.++++|+++||.+|+++|.++++.++.|+|+++++|||||||++|++|++..+.+. .+.++|
T Consensus 51 ~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~l 130 (262)
T 3ly5_A 51 DTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVL 130 (262)
T ss_dssp GGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEE
T ss_pred cCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEE
Confidence 345777766699999999999999999999999999999999999999999999999999999988652 367899
Q ss_pred EEcccHHHHHHHHHHHHHhHhhCCCCccEEEEcCCCcHH-HHHHHhcCCcEEEeChhHHHHhhcCCCchhHHHhhhhhhh
Q 002135 305 YMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQK-DRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLI 383 (961)
Q Consensus 305 vl~PtraLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~~-~r~~l~~~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~ 383 (961)
|++||++|++|+++.+++++...+ ..+..+.|+.... +...+..+++|+|+||++|...+.... ...+.++
T Consensus 131 il~Pt~~La~q~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~---~~~~~~l--- 202 (262)
T 3ly5_A 131 ILSPTRELAMQTFGVLKELMTHHV--HTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTP---GFMYKNL--- 202 (262)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTCC--SCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCT---TCCCTTC---
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcC--ceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccC---CcccccC---
Confidence 999999999999999999877554 5666677766543 445566789999999999976542111 0123344
Q ss_pred hhhcchhhhhhhhcceeEEEEecchhhhc-ccchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCChHHHHHH
Q 002135 384 AFSLVTTEVYLIFLFIRFVVIDEAHAYKG-AFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCME 455 (961)
Q Consensus 384 ~~~~~~~~~~~~~~~i~~VVIDEaH~~~~-~fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~~e~~~~ 455 (961)
++|||||||++.+ +|+..+..+++.+ +..+|+|++|||+++..+.+.+
T Consensus 203 ----------------~~lViDEah~l~~~~~~~~l~~i~~~~--------~~~~q~l~~SAT~~~~v~~~~~ 251 (262)
T 3ly5_A 203 ----------------QCLVIDEADRILDVGFEEELKQIIKLL--------PTRRQTMLFSATQTRKVEDLAR 251 (262)
T ss_dssp ----------------CEEEECSHHHHHHTTCHHHHHHHHHHS--------CSSSEEEEECSSCCHHHHHHHH
T ss_pred ----------------CEEEEcChHHHhhhhHHHHHHHHHHhC--------CCCCeEEEEEecCCHHHHHHHH
Confidence 9999999999887 4776666555433 3467999999999865544433
No 60
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.94 E-value=1.6e-26 Score=245.40 Aligned_cols=192 Identities=18% Similarity=0.237 Sum_probs=150.7
Q ss_pred eecCCcccccccCCccccHHHHHHHHhCCCCCCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhc-CCCCe
Q 002135 224 EDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSH-DLSSS 302 (961)
Q Consensus 224 ~~~p~~~~~f~~l~~~L~~~l~~~L~~~g~~~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~-~~~~~ 302 (961)
...|.....|.++ +|++.+.++|++.||..|+++|.++++.+++|+|+++++|||||||++|++|++..+.. ..+.+
T Consensus 17 ~~~~~~~~~f~~l--~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~ 94 (230)
T 2oxc_A 17 DVLLAEPADFESL--LLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQ 94 (230)
T ss_dssp -------CCGGGG--TCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCC
T ss_pred CCCCCCCCCHhhc--CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCce
Confidence 4456666789998 69999999999999999999999999999999999999999999999999999998764 34678
Q ss_pred EEEEcccHHHHHHHHHHHHHhHhhCCCCccEEEEcCCCcHHHHHHHhcCCcEEEeChhHHHHhhcCCCchhHHHhhhhhh
Q 002135 303 ALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRL 382 (961)
Q Consensus 303 aLvl~PtraLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~~~r~~l~~~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~ 382 (961)
+||++||++|+.|+.++++++..... ++.+..+.|+....+......+++|+|+||++|...+... ...+.++
T Consensus 95 ~lil~Pt~~L~~q~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~----~~~~~~~-- 167 (230)
T 2oxc_A 95 ILILAPTREIAVQIHSVITAIGIKME-GLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELD----YLNPGSI-- 167 (230)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTST-TCCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTT----SSCGGGC--
T ss_pred EEEEeCCHHHHHHHHHHHHHHhcccC-CceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcC----CcccccC--
Confidence 99999999999999999999876442 4778888998877665555568999999999997654211 1113334
Q ss_pred hhhhcchhhhhhhhcceeEEEEecchhhhc-c-cchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCCh
Q 002135 383 IAFSLVTTEVYLIFLFIRFVVIDEAHAYKG-A-FGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANP 449 (961)
Q Consensus 383 ~~~~~~~~~~~~~~~~i~~VVIDEaH~~~~-~-fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~ 449 (961)
++||+||||++.+ + |+..+..+++.+ ....|++++|||+++.
T Consensus 168 -----------------~~lViDEah~~~~~~~~~~~~~~i~~~~--------~~~~~~l~lSAT~~~~ 211 (230)
T 2oxc_A 168 -----------------RLFILDEADKLLEEGSFQEQINWIYSSL--------PASKQMLAVSATYPEF 211 (230)
T ss_dssp -----------------CEEEESSHHHHHSTTSSHHHHHHHHHHS--------CSSCEEEEEESCCCHH
T ss_pred -----------------CEEEeCCchHhhcCcchHHHHHHHHHhC--------CCCCeEEEEEeccCHH
Confidence 9999999999975 2 666665554433 3467999999998643
No 61
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.94 E-value=3e-26 Score=238.40 Aligned_cols=186 Identities=22% Similarity=0.276 Sum_probs=147.1
Q ss_pred cccccCCccccHHHHHHHHhCCCCCCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcC-CCCeEEEEccc
Q 002135 231 AVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHD-LSSSALYMFPT 309 (961)
Q Consensus 231 ~~f~~l~~~L~~~l~~~L~~~g~~~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~-~~~~aLvl~Pt 309 (961)
.+|.++ +|++.+.++|+++||..|+++|.++++.+++|+++++++|||||||++|++|++..+... .+.++||++||
T Consensus 3 ~~f~~~--~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt 80 (206)
T 1vec_A 3 NEFEDY--CLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPT 80 (206)
T ss_dssp SSGGGS--CCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSC
T ss_pred CChhhc--CCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCc
Confidence 458888 699999999999999999999999999999999999999999999999999999987643 35689999999
Q ss_pred HHHHHHHHHHHHHhHhhCCCCccEEEEcCCCcHH-HHHHHhcCCcEEEeChhHHHHhhcCCCchhHHHhhhhhhhhhhcc
Q 002135 310 KALAQDQLRALLAMTKAFDASIDIGVYDGDTTQK-DRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLV 388 (961)
Q Consensus 310 raLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~~-~r~~l~~~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~~~~~ 388 (961)
++|+.|+.+.+.++....+ ++.+..+.|+.... +...+..+++|+|+||++|...+... ...+.++
T Consensus 81 ~~L~~q~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~----~~~~~~~-------- 147 (206)
T 1vec_A 81 RELALQVSQICIQVSKHMG-GAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKG----VAKVDHV-------- 147 (206)
T ss_dssp HHHHHHHHHHHHHHTTTSS-SCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTT----CSCCTTC--------
T ss_pred HHHHHHHHHHHHHHHhhcC-CceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcC----CcCcccC--------
Confidence 9999999999999876552 36677777776654 33455667999999999997654211 1123333
Q ss_pred hhhhhhhhcceeEEEEecchhhhc-ccchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCChH
Q 002135 389 TTEVYLIFLFIRFVVIDEAHAYKG-AFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPR 450 (961)
Q Consensus 389 ~~~~~~~~~~i~~VVIDEaH~~~~-~fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~~ 450 (961)
++||+||||++.+ +|+..+..+++.+ ..+.|++++|||+++..
T Consensus 148 -----------~~lViDEah~~~~~~~~~~l~~i~~~~--------~~~~~~l~~SAT~~~~~ 191 (206)
T 1vec_A 148 -----------QMIVLDEADKLLSQDFVQIMEDIILTL--------PKNRQILLYSATFPLSV 191 (206)
T ss_dssp -----------CEEEEETHHHHTSTTTHHHHHHHHHHS--------CTTCEEEEEESCCCHHH
T ss_pred -----------CEEEEEChHHhHhhCcHHHHHHHHHhC--------CccceEEEEEeeCCHHH
Confidence 9999999999876 3555544443322 34679999999997543
No 62
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.94 E-value=6.4e-26 Score=285.32 Aligned_cols=341 Identities=16% Similarity=0.127 Sum_probs=208.0
Q ss_pred CCcHHHHHHHHHHhC--------------CCcEEEEecCCchhHHHHHHHHHHHHhcCC-CCeEEEEcccHHHHHHHHHH
Q 002135 255 KLYSHQAESIMASLA--------------GKNVVVATMTSSGKSLCYNLPVLEALSHDL-SSSALYMFPTKALAQDQLRA 319 (961)
Q Consensus 255 ~l~~~Q~~ai~~il~--------------G~~vIv~apTGSGKTla~~Lpil~~l~~~~-~~~aLvl~PtraLa~qq~~~ 319 (961)
.|++||.+|++.++. +++.+++++||||||+++ ++++..+...+ ..++|||+|+++|+.|+.+.
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 599999999999875 368999999999999998 67776554332 36899999999999999999
Q ss_pred HHHhHhhCCCCccEEEEcCCCcHHHHHHHh-cCCcEEEeChhHHHHhhcCCCchhHHHhhhhhhhhhhcchhhhhhhhcc
Q 002135 320 LLAMTKAFDASIDIGVYDGDTTQKDRMWLR-DNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLF 398 (961)
Q Consensus 320 l~~l~~~~~~~i~v~~~~Gd~~~~~r~~l~-~~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~ 398 (961)
+..+... . +..+......+..+. .+++|+|+||++|...+-.. ... ..+..
T Consensus 350 f~~f~~~---~----v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~-~~~-~~~~~------------------- 401 (1038)
T 2w00_A 350 YQRFSPD---S----VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAE-SDL-PVYNQ------------------- 401 (1038)
T ss_dssp HHTTSTT---C----SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHC-CCC-GGGGS-------------------
T ss_pred HHHhccc---c----cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcc-cch-hcccc-------------------
Confidence 8886532 1 123445555555564 46899999999987543100 000 01222
Q ss_pred eeEEEEecchhhhcccchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCChH-----HHHHHHcccCCeEEEe-----cC
Q 002135 399 IRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPR-----EHCMELANLSTLELIQ-----ND 468 (961)
Q Consensus 399 i~~VVIDEaH~~~~~fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~~-----e~~~~L~~~~~~~~i~-----~~ 468 (961)
..+||+||||++.. |.. .+.+.... ++.+++++|||+.... .....++|.. +.... .+
T Consensus 402 ~~lvIiDEAHrs~~--~~~----~~~I~~~~-----p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~-i~~Y~l~~AI~d 469 (1038)
T 2w00_A 402 QVVFIFDECHRSQF--GEA----QKNLKKKF-----KRYYQFGFTGTPIFPENALGSETTASVFGRE-LHSYVITDAIRD 469 (1038)
T ss_dssp CEEEEEESCCTTHH--HHH----HHHHHHHC-----SSEEEEEEESSCCCSTTCTTSCCHHHHHCSE-EEEECHHHHHHH
T ss_pred ccEEEEEccchhcc--hHH----HHHHHHhC-----CcccEEEEeCCccccccchhhhHHHHHhCCe-eEeecHHHHHhC
Confidence 38999999999752 222 23333322 3468999999986532 1334444421 11111 01
Q ss_pred CCccceeEEEEeCCCccccccccccccccchhhh----cccCCCCcHHHHH-HHHHHHHH---------CCCcEEEEecC
Q 002135 469 GSPCAQKLFVLWNPTSCLRSVLNKSQTDMDDTRN----AANKTSSPISEVS-YLFAEMVQ---------HGLRCIAFCRS 534 (961)
Q Consensus 469 g~p~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~ll~~l~~---------~g~k~IVF~~s 534 (961)
|.-.+... .+.............. ....... ...........++ .++.+... .+.++||||+|
T Consensus 470 g~l~p~~v--~y~~v~~~~~~~~~e~-d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S 546 (1038)
T 2w00_A 470 EKVLKFKV--DYNDVRPQFKSLETET-DEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSS 546 (1038)
T ss_dssp TSSCCEEE--EECCCCGGGHHHHTCC-CHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESS
T ss_pred CCcCCeEE--EEEeccchhhhccccc-cHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECC
Confidence 22111111 1111000000000000 0000000 0000111122222 23333322 34689999999
Q ss_pred hHHHHHHHHHHHHHHHhh----CCcccccE-EEEcCC----------C----------CH--------------------
Q 002135 535 RKLCELVLSYTREILEET----APHLVDSI-CVYRAG----------Y----------VA-------------------- 569 (961)
Q Consensus 535 r~~ae~l~~~L~~~l~~~----~~~l~~~v-~~~hgg----------l----------s~-------------------- 569 (961)
+..|..+++.|.+...+. ......++ ..+||+ + ++
T Consensus 547 ~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~ 626 (1038)
T 2w00_A 547 VDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTN 626 (1038)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhccc
Confidence 999999999998765332 11111233 455542 2 22
Q ss_pred ---------HHHHHHHHHHhCCCceEEEeccccccccccCCccEEEEeCCCCCHhhHHHHhccCCCCCCC--ceEEEEee
Q 002135 570 ---------EDRRRIERDFFGGKLCGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERP--SLAVYVAF 638 (961)
Q Consensus 570 ---------~eR~~ie~~f~~G~~~vLVAT~aLe~GIDIp~vd~VI~~~~P~s~~sy~QR~GRAGR~g~~--g~~i~l~~ 638 (961)
.+|+.++++|++|++++||+|+++.+|+|+|.+ .|+.+|.|.+...|+|++||++|.+.. ..++++.+
T Consensus 627 ~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf 705 (1038)
T 2w00_A 627 FSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTF 705 (1038)
T ss_dssp CCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEES
T ss_pred ccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEc
Confidence 248889999999999999999999999999999 678899999999999999999999653 23444444
Q ss_pred CC
Q 002135 639 EG 640 (961)
Q Consensus 639 ~~ 640 (961)
.+
T Consensus 706 ~~ 707 (1038)
T 2w00_A 706 RD 707 (1038)
T ss_dssp SC
T ss_pred cc
Confidence 43
No 63
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.94 E-value=8.4e-26 Score=281.64 Aligned_cols=349 Identities=14% Similarity=0.125 Sum_probs=227.9
Q ss_pred CCcHHHHHHHHHHh----CCCcEEEEecCCchhHHHHHHHHHHHHh-cCCCCeEEEEcccHHHHHHHHHHHHHhHhhCCC
Q 002135 255 KLYSHQAESIMASL----AGKNVVVATMTSSGKSLCYNLPVLEALS-HDLSSSALYMFPTKALAQDQLRALLAMTKAFDA 329 (961)
Q Consensus 255 ~l~~~Q~~ai~~il----~G~~vIv~apTGSGKTla~~Lpil~~l~-~~~~~~aLvl~PtraLa~qq~~~l~~l~~~~~~ 329 (961)
+|+|||.+++..++ .+++.|++.+||+|||+.++..+...+. ......+|||+| .+|+.|+.+++.+++.
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p---- 310 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAP---- 310 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHST----
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCC----
Confidence 79999999998766 7899999999999999998766654443 234567899999 6788899999988753
Q ss_pred CccEEEEcCCCcHHHHHH-------------HhcCCcEEEeChhHHHHhhcCCCchhHHHhhhhhhhhhhcchhhhhhhh
Q 002135 330 SIDIGVYDGDTTQKDRMW-------------LRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIF 396 (961)
Q Consensus 330 ~i~v~~~~Gd~~~~~r~~-------------l~~~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~~~~~~~~~~~~~ 396 (961)
.+.+.+++|......... .....+|+|+|++++.... ..+...
T Consensus 311 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~--------~~l~~~---------------- 366 (800)
T 3mwy_W 311 DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDR--------AELGSI---------------- 366 (800)
T ss_dssp TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTH--------HHHHTS----------------
T ss_pred CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhH--------HHHhcC----------------
Confidence 467888888775443211 1124689999999986431 233333
Q ss_pred cceeEEEEecchhhhcccchHHHHHHHHHHHHhhcccCCCCcEEEeccCCC--ChHHHHHHH--cccCCe----------
Q 002135 397 LFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSA--NPREHCMEL--ANLSTL---------- 462 (961)
Q Consensus 397 ~~i~~VVIDEaH~~~~~fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~--n~~e~~~~L--~~~~~~---------- 462 (961)
.+++|||||||++.+ .+......+..+ .....+++|||+- +..+...-+ +.....
T Consensus 367 -~w~~vIvDEaH~lkn-~~s~~~~~l~~l---------~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~ 435 (800)
T 3mwy_W 367 -KWQFMAVDEAHRLKN-AESSLYESLNSF---------KVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFEN 435 (800)
T ss_dssp -EEEEEEETTGGGGCC-SSSHHHHHHTTS---------EEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------C
T ss_pred -CcceeehhhhhhhcC-chhHHHHHHHHh---------hhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccc
Confidence 239999999999965 333333333222 1235689999982 222222111 000000
Q ss_pred ------------------EEEec------CCCccceeEEEEeCCCcccc-cc----cc-------ccccc----------
Q 002135 463 ------------------ELIQN------DGSPCAQKLFVLWNPTSCLR-SV----LN-------KSQTD---------- 496 (961)
Q Consensus 463 ------------------~~i~~------~g~p~~~~~~~l~~p~~~~~-~~----~~-------~~~~~---------- 496 (961)
.++.. ..-|. .....++.+..... .. .. .....
T Consensus 436 ~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~-k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~ 514 (800)
T 3mwy_W 436 QDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPS-KTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMN 514 (800)
T ss_dssp CTTHHHHHHHHHHHTTGGGEEECCGGGGTTTSCC-EEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHH
T ss_pred cchhHHHHHHHHHHHHhHHHhhhhHHhhhhccCC-cEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHH
Confidence 00000 00111 11111111110000 00 00 00000
Q ss_pred -----------------------------cchhhhcccCCCCcHHHHHHHHHHHHHCCCcEEEEecChHHHHHHHHHHHH
Q 002135 497 -----------------------------MDDTRNAANKTSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTRE 547 (961)
Q Consensus 497 -----------------------------~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~k~IVF~~sr~~ae~l~~~L~~ 547 (961)
.............+...+..++..+...|.++||||..+..++.+..+|..
T Consensus 515 ~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~ 594 (800)
T 3mwy_W 515 ELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSI 594 (800)
T ss_dssp HHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHh
Confidence 000000001123445556677777777889999999999999999888865
Q ss_pred HHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCc---eEEEeccccccccccCCccEEEEeCCCCCHhhHHHHhccC
Q 002135 548 ILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKL---CGVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 624 (961)
Q Consensus 548 ~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~---~vLVAT~aLe~GIDIp~vd~VI~~~~P~s~~sy~QR~GRA 624 (961)
.+..+..+||+++..+|+++++.|+++.. .+|++|.+++.|||++.+++||++|+|+|...+.||+||+
T Consensus 595 --------~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~ 666 (800)
T 3mwy_W 595 --------KGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARA 666 (800)
T ss_dssp --------HTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTT
T ss_pred --------CCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHH
Confidence 24467899999999999999999998654 4899999999999999999999999999999999999999
Q ss_pred CCCCCCceE--EEEeeCCcchhHHHhchHH
Q 002135 625 GRRERPSLA--VYVAFEGPLDQYFMKYPEK 652 (961)
Q Consensus 625 GR~g~~g~~--i~l~~~~~~d~~~~~~~e~ 652 (961)
+|.|+...+ +.++..+..|..+.+....
T Consensus 667 ~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~ 696 (800)
T 3mwy_W 667 HRIGQKNHVMVYRLVSKDTVEEEVLERARK 696 (800)
T ss_dssp SCSSCCSCEEEEEEEETTSHHHHHHHHHHH
T ss_pred HhcCCCceEEEEEEecCCCHHHHHHHHHHH
Confidence 999876544 4556666667666655443
No 64
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.94 E-value=1.3e-26 Score=248.26 Aligned_cols=214 Identities=18% Similarity=0.204 Sum_probs=155.9
Q ss_pred HHHHHccCCCCCceEEeeecCCcccccccCCc--cccHHHHHHHHhCCCCCCcHHHHHHHHHHhCCCcEEEEecCCchhH
Q 002135 207 VEHLRKGIGSQGQMVHVEDISARKAVLVEIPD--ALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKS 284 (961)
Q Consensus 207 ~~~lr~~~~~~~~iv~~~~~p~~~~~f~~l~~--~L~~~l~~~L~~~g~~~l~~~Q~~ai~~il~G~~vIv~apTGSGKT 284 (961)
++.+|+.. ...+...+.|.+..+|.++.. ++++.+.++|.+.||..|+++|.++++.+++|+++++++|||||||
T Consensus 4 ~~~~~~~~---~i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT 80 (245)
T 3dkp_A 4 INFLRNKH---KIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKT 80 (245)
T ss_dssp HHHHHHHT---TEEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHH
T ss_pred HHHHHHhC---ceEecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHH
Confidence 44566554 234456678888888988732 5899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC--CCCeEEEEcccHHHHHHHHHHHHHhHhhCCCCccEEEEcCCCcHHHH--HHHhcCCcEEEeChh
Q 002135 285 LCYNLPVLEALSHD--LSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDR--MWLRDNARLLITNPD 360 (961)
Q Consensus 285 la~~Lpil~~l~~~--~~~~aLvl~PtraLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~~~r--~~l~~~~~IlItTPe 360 (961)
++|++|++..+... .+.++||++||++|+.|+.+++++++...+ +.+..+.|+.....+ .....+++|+|+||+
T Consensus 81 ~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~ 158 (245)
T 3dkp_A 81 LAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTG--FRIHMIHKAAVAAKKFGPKSSKKFDILVTTPN 158 (245)
T ss_dssp HHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSC--CCEECCCHHHHHHTTTSTTSCCCCCEEEECHH
T ss_pred HHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccC--ceEEEEecCccHHHHhhhhhcCCCCEEEECHH
Confidence 99999999988652 456899999999999999999999877554 556655554332221 122346899999999
Q ss_pred HHHHhhcCCCchhHHHhhhhhhhhhhcchhhhhhhhcceeEEEEecchhhhcc-cchHHHHHHHHHHHHhhcccCCCCcE
Q 002135 361 MLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGA-FGCHTALILRRLCRLCSHVYGSDPSF 439 (961)
Q Consensus 361 ~L~~~lL~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~i~~VVIDEaH~~~~~-fg~~~~~ilrrL~~~~~~~~~~~~q~ 439 (961)
+|...+...... ..+.++ ++||+||||++.+. +.. +...+..+... ....+.|+
T Consensus 159 ~l~~~l~~~~~~--~~~~~~-------------------~~lViDEah~~~~~~~~~-~~~~~~~i~~~---~~~~~~~~ 213 (245)
T 3dkp_A 159 RLIYLLKQDPPG--IDLASV-------------------EWLVVDESDKLFEDGKTG-FRDQLASIFLA---CTSHKVRR 213 (245)
T ss_dssp HHHHHHHSSSCS--CCCTTC-------------------CEEEESSHHHHHHHC--C-HHHHHHHHHHH---CCCTTCEE
T ss_pred HHHHHHHhCCCC--cccccC-------------------cEEEEeChHHhccccccc-HHHHHHHHHHh---cCCCCcEE
Confidence 998765322111 123444 99999999999752 111 22222222111 12456799
Q ss_pred EEeccCCCChH
Q 002135 440 VFSTATSANPR 450 (961)
Q Consensus 440 I~lSATl~n~~ 450 (961)
+++|||+++..
T Consensus 214 ~~~SAT~~~~v 224 (245)
T 3dkp_A 214 AMFSATFAYDV 224 (245)
T ss_dssp EEEESSCCHHH
T ss_pred EEEeccCCHHH
Confidence 99999997544
No 65
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.94 E-value=2.6e-26 Score=241.72 Aligned_cols=195 Identities=21% Similarity=0.222 Sum_probs=150.4
Q ss_pred cccccCCccccHHHHHHHHhCCCCCCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcCC-CCeEEEEccc
Q 002135 231 AVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDL-SSSALYMFPT 309 (961)
Q Consensus 231 ~~f~~l~~~L~~~l~~~L~~~g~~~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~~-~~~aLvl~Pt 309 (961)
.+|.++ +|++.+.++|+++|+.+|+++|.++++.+++|+++++++|||||||++|++|++..+.... +.++||++||
T Consensus 4 ~~f~~~--~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt 81 (219)
T 1q0u_A 4 TQFTRF--PFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPT 81 (219)
T ss_dssp CCGGGS--CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred CCHhhC--CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCc
Confidence 458888 6999999999999999999999999999999999999999999999999999999886543 5789999999
Q ss_pred HHHHHHHHHHHHHhHhhCCC--CccEEEEcCCCcHHHH-HHHhcCCcEEEeChhHHHHhhcCCCchhHHHhhhhhhhhhh
Q 002135 310 KALAQDQLRALLAMTKAFDA--SIDIGVYDGDTTQKDR-MWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFS 386 (961)
Q Consensus 310 raLa~qq~~~l~~l~~~~~~--~i~v~~~~Gd~~~~~r-~~l~~~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~~~ 386 (961)
++|+.|+.++++++....+. .+.+..+.|+...... ..+..+++|+|+||++|...+... ...+.++
T Consensus 82 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~----~~~~~~~------ 151 (219)
T 1q0u_A 82 RELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQ----ALDVHTA------ 151 (219)
T ss_dssp HHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTT----CCCGGGC------
T ss_pred HHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcC----CCCcCcc------
Confidence 99999999999998775532 3667777777654432 233456899999999997654211 1123344
Q ss_pred cchhhhhhhhcceeEEEEecchhhhc-ccchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCChH-HHHHHHcc
Q 002135 387 LVTTEVYLIFLFIRFVVIDEAHAYKG-AFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPR-EHCMELAN 458 (961)
Q Consensus 387 ~~~~~~~~~~~~i~~VVIDEaH~~~~-~fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~~-e~~~~L~~ 458 (961)
++||+||||++.+ +|+..+..++..+ +.+.|++++|||+++.. +.++.++.
T Consensus 152 -------------~~lViDEah~~~~~~~~~~l~~i~~~~--------~~~~~~l~~SAT~~~~~~~~~~~~~~ 204 (219)
T 1q0u_A 152 -------------HILVVDEADLMLDMGFITDVDQIAARM--------PKDLQMLVFSATIPEKLKPFLKKYME 204 (219)
T ss_dssp -------------CEEEECSHHHHHHTTCHHHHHHHHHTS--------CTTCEEEEEESCCCGGGHHHHHHHCS
T ss_pred -------------eEEEEcCchHHhhhChHHHHHHHHHhC--------CcccEEEEEecCCCHHHHHHHHHHcC
Confidence 9999999999976 3555544443322 34679999999997644 34444444
No 66
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.94 E-value=2.2e-26 Score=245.54 Aligned_cols=200 Identities=18% Similarity=0.258 Sum_probs=146.4
Q ss_pred eecCCcccccccCCccccHHHHHHHHhCCCCCCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcC-CCCe
Q 002135 224 EDISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHD-LSSS 302 (961)
Q Consensus 224 ~~~p~~~~~f~~l~~~L~~~l~~~L~~~g~~~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~-~~~~ 302 (961)
.+.|....+|.++ +|++.+.++|+++||..|+++|.++++.+++|+|+++++|||||||++|++|++..+... .+.+
T Consensus 23 ~~~~~~~~~f~~l--~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~ 100 (237)
T 3bor_A 23 SNWNEIVDNFDDM--NLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQ 100 (237)
T ss_dssp ----CCCCSGGGS--CCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCC
T ss_pred CCCCCccCChhhc--CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCce
Confidence 3455666789998 699999999999999999999999999999999999999999999999999999988653 4568
Q ss_pred EEEEcccHHHHHHHHHHHHHhHhhCCCCccEEEEcCCCc-HHHHHHHhcC-CcEEEeChhHHHHhhcCCCchhHHHhhhh
Q 002135 303 ALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTT-QKDRMWLRDN-ARLLITNPDMLHMSILPYHGQFSRILSNL 380 (961)
Q Consensus 303 aLvl~PtraLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~-~~~r~~l~~~-~~IlItTPe~L~~~lL~~~~~~~~~L~~l 380 (961)
+||++||++|+.|+.+.+++++...+ +.+....|+.. ..+...+..+ ++|+|+||++|.+.+.... ..+.++
T Consensus 101 ~lil~Pt~~L~~q~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~----~~~~~~ 174 (237)
T 3bor_A 101 ALVLAPTRELAQQIQKVILALGDYMG--ATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRY----LSPKWI 174 (237)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTT--CCEEEECC-------------CCCSEEEECHHHHHHHHHTTS----SCSTTC
T ss_pred EEEEECcHHHHHHHHHHHHHHhhhcC--ceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCC----cCcccC
Confidence 99999999999999999999876544 45555555543 3444445555 8999999999976652110 112333
Q ss_pred hhhhhhcchhhhhhhhcceeEEEEecchhhhc-ccchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCChH-HHHHHHcc
Q 002135 381 RLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKG-AFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPR-EHCMELAN 458 (961)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~i~~VVIDEaH~~~~-~fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~~-e~~~~L~~ 458 (961)
++||+||||++.+ +|+..+..+++.+ ....|+|++|||+++.. +.+..++.
T Consensus 175 -------------------~~lViDEah~~~~~~~~~~l~~i~~~~--------~~~~~~i~~SAT~~~~~~~~~~~~l~ 227 (237)
T 3bor_A 175 -------------------KMFVLDEADEMLSRGFKDQIYEIFQKL--------NTSIQVVLLSATMPTDVLEVTKKFMR 227 (237)
T ss_dssp -------------------CEEEEESHHHHHHTTCHHHHHHHHHHS--------CTTCEEEEECSSCCHHHHHHHHHHCS
T ss_pred -------------------cEEEECCchHhhccCcHHHHHHHHHhC--------CCCCeEEEEEEecCHHHHHHHHHHCC
Confidence 9999999999875 4666665554433 34679999999997544 33444443
No 67
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.94 E-value=5.3e-25 Score=267.97 Aligned_cols=348 Identities=15% Similarity=0.129 Sum_probs=216.1
Q ss_pred CCcHHHHHHHHHHh---------CCCcEEEEecCCchhHHHHHHHHHHHHhcCC-----CCeEEEEcccHHHHHHHHHHH
Q 002135 255 KLYSHQAESIMASL---------AGKNVVVATMTSSGKSLCYNLPVLEALSHDL-----SSSALYMFPTKALAQDQLRAL 320 (961)
Q Consensus 255 ~l~~~Q~~ai~~il---------~G~~vIv~apTGSGKTla~~Lpil~~l~~~~-----~~~aLvl~PtraLa~qq~~~l 320 (961)
.|+|||.+++..+. .+.+.|++.+||+|||+.++..+...+...+ ..++|||+|+ .|+.|+.+++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 69999999999874 4567999999999999998877776655432 2469999997 7889999999
Q ss_pred HHhHhhCCCCccEEEEcCCCcHHHHHH----Hhc-----CCcEEEeChhHHHHhhcCCCchhHHHhhhhhhhhhhcchhh
Q 002135 321 LAMTKAFDASIDIGVYDGDTTQKDRMW----LRD-----NARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTE 391 (961)
Q Consensus 321 ~~l~~~~~~~i~v~~~~Gd~~~~~r~~----l~~-----~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~~~~~~~~ 391 (961)
.++... .+.+..++|......... +.. ..+|+|+|++++.... ..+...
T Consensus 134 ~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--------~~l~~~----------- 191 (644)
T 1z3i_X 134 GKWLGG---RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--------EVLHKG----------- 191 (644)
T ss_dssp HHHHGG---GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--------TTTTTS-----------
T ss_pred HHHcCC---CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--------HHhhcC-----------
Confidence 998754 244555555543332221 211 3689999999886432 112111
Q ss_pred hhhhhcceeEEEEecchhhhcccchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCCh--HH------------------
Q 002135 392 VYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANP--RE------------------ 451 (961)
Q Consensus 392 ~~~~~~~i~~VVIDEaH~~~~~fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~--~e------------------ 451 (961)
.+++||+||||++.+ ........+..+ .....+++|||+-.. .+
T Consensus 192 ------~~~~vI~DEaH~ikn-~~~~~~~al~~l---------~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~ 255 (644)
T 1z3i_X 192 ------KVGLVICDEGHRLKN-SDNQTYLALNSM---------NAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQE 255 (644)
T ss_dssp ------CCCEEEETTGGGCCT-TCHHHHHHHHHH---------CCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHH
T ss_pred ------CccEEEEECceecCC-hhhHHHHHHHhc---------ccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHH
Confidence 238999999999875 233333333332 134679999998321 11
Q ss_pred HHHHHc---------------------------ccCCeEEEe------cCCCccceeEEEEeCCCcccccc---------
Q 002135 452 HCMELA---------------------------NLSTLELIQ------NDGSPCAQKLFVLWNPTSCLRSV--------- 489 (961)
Q Consensus 452 ~~~~L~---------------------------~~~~~~~i~------~~g~p~~~~~~~l~~p~~~~~~~--------- 489 (961)
+.+.+. ..-...++. ...-|......+...........
T Consensus 256 F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~ 335 (644)
T 1z3i_X 256 FKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAK 335 (644)
T ss_dssp HHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHC
T ss_pred HHHhhcchhhhcCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 100000 000000000 00111111111111110000000
Q ss_pred -cccccccc---------------------------------chhhh----------cccCCCCcHHHHHHHHHHHHH-C
Q 002135 490 -LNKSQTDM---------------------------------DDTRN----------AANKTSSPISEVSYLFAEMVQ-H 524 (961)
Q Consensus 490 -~~~~~~~~---------------------------------~~~~~----------~~~~~~~~~~~~~~ll~~l~~-~ 524 (961)
........ ..... .......+...+..++..+.. .
T Consensus 336 ~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~ 415 (644)
T 1z3i_X 336 PVESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTT 415 (644)
T ss_dssp GGGSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCccchhHHHHHHHHHHHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcC
Confidence 00000000 00000 000012223334444444432 4
Q ss_pred CCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCc---eEEEeccccccccccCC
Q 002135 525 GLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKL---CGVAATNALELGIDVGH 601 (961)
Q Consensus 525 g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~---~vLVAT~aLe~GIDIp~ 601 (961)
+.++||||+.+..++.+...+.. .+..+..+||+++..+|.+++++|++|.. .+|++|.++++|+|+++
T Consensus 416 ~~k~lIFs~~~~~~~~l~~~l~~--------~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~ 487 (644)
T 1z3i_X 416 SDKVVLVSNYTQTLDLFEKLCRN--------RRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIG 487 (644)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHH--------HTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTT
T ss_pred CCEEEEEEccHHHHHHHHHHHHH--------CCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCccccc
Confidence 78999999999999998887765 24467889999999999999999999875 48999999999999999
Q ss_pred ccEEEEeCCCCCHhhHHHHhccCCCCCCCceE--EEEeeCCcchhHHHhc
Q 002135 602 IDVTLHLGFPGSIASLWQQAGRSGRRERPSLA--VYVAFEGPLDQYFMKY 649 (961)
Q Consensus 602 vd~VI~~~~P~s~~sy~QR~GRAGR~g~~g~~--i~l~~~~~~d~~~~~~ 649 (961)
+++||++|+|++.+.+.|++||++|.|+...+ +.++..+..|..+.+.
T Consensus 488 a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~ 537 (644)
T 1z3i_X 488 ANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQR 537 (644)
T ss_dssp EEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHH
T ss_pred CCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHHHHHHH
Confidence 99999999999999999999999999987644 4445555555554443
No 68
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.94 E-value=3.5e-26 Score=241.17 Aligned_cols=199 Identities=18% Similarity=0.250 Sum_probs=149.4
Q ss_pred ecCCcccccccCCccccHHHHHHHHhCCCCCCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcC-CCCeE
Q 002135 225 DISARKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHD-LSSSA 303 (961)
Q Consensus 225 ~~p~~~~~f~~l~~~L~~~l~~~L~~~g~~~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~-~~~~a 303 (961)
.+|....+|.++ +|++.+.+.|+++|+..|+++|.++++.+++|+++++++|||||||++|++|++..+... .+.++
T Consensus 8 ~~~~~~~~f~~l--~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~ 85 (224)
T 1qde_A 8 NYDKVVYKFDDM--ELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQA 85 (224)
T ss_dssp SCCCCCCCGGGG--TCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCE
T ss_pred ccCcccCChhhc--CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceE
Confidence 345556779888 699999999999999999999999999999999999999999999999999999988654 35689
Q ss_pred EEEcccHHHHHHHHHHHHHhHhhCCCCccEEEEcCCCcHHHHHHHhcCCcEEEeChhHHHHhhcCCCchhHHHhhhhhhh
Q 002135 304 LYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLI 383 (961)
Q Consensus 304 Lvl~PtraLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~~~r~~l~~~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~ 383 (961)
||++||++|+.|+.+.+.++....+ +.+..+.|+....+.......++|+|+||++|...+... ...+.++
T Consensus 86 lil~Pt~~L~~q~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~----~~~~~~~--- 156 (224)
T 1qde_A 86 LMLAPTRELALQIQKVVMALAFHMD--IKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRR----RFRTDKI--- 156 (224)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSC--CCEEEECC----------CTTCSEEEECHHHHHHHHHTT----SSCCTTC---
T ss_pred EEEECCHHHHHHHHHHHHHHhcccC--ceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhC----CcchhhC---
Confidence 9999999999999999999876543 677778887765544333345999999999987655221 1113333
Q ss_pred hhhcchhhhhhhhcceeEEEEecchhhhc-ccchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCChH-HHHHHHcc
Q 002135 384 AFSLVTTEVYLIFLFIRFVVIDEAHAYKG-AFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPR-EHCMELAN 458 (961)
Q Consensus 384 ~~~~~~~~~~~~~~~i~~VVIDEaH~~~~-~fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~~-e~~~~L~~ 458 (961)
++||+||||++.+ +|+..+..+++.+ +...|++++|||+++.. +.++.+++
T Consensus 157 ----------------~~iViDEah~~~~~~~~~~l~~i~~~~--------~~~~~~i~lSAT~~~~~~~~~~~~~~ 209 (224)
T 1qde_A 157 ----------------KMFILDEADEMLSSGFKEQIYQIFTLL--------PPTTQVVLLSATMPNDVLEVTTKFMR 209 (224)
T ss_dssp ----------------CEEEEETHHHHHHTTCHHHHHHHHHHS--------CTTCEEEEEESSCCHHHHHHHHHHCS
T ss_pred ----------------cEEEEcChhHHhhhhhHHHHHHHHHhC--------CccCeEEEEEeecCHHHHHHHHHHCC
Confidence 9999999999876 3655554443322 35679999999997654 34444443
No 69
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.94 E-value=1.6e-26 Score=248.82 Aligned_cols=206 Identities=19% Similarity=0.201 Sum_probs=157.1
Q ss_pred EEeeecCC--cccccccCCccccHHHHHHHHhCCCCCCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcC
Q 002135 221 VHVEDISA--RKAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHD 298 (961)
Q Consensus 221 v~~~~~p~--~~~~f~~l~~~L~~~l~~~L~~~g~~~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~ 298 (961)
+.....|. ...+|.++ +|++.+.++|+..||..|+++|.++++.+++|+|+++++|||||||++|++|++..+...
T Consensus 11 ~~~~~~~~~~~~~~f~~l--~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~ 88 (253)
T 1wrb_A 11 VTGPDYSATNVIENFDEL--KLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQ 88 (253)
T ss_dssp EECCSSSCCSCCCSSGGG--SCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred eeCCCCCCCCccCCHhhC--CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhh
Confidence 44555665 55678888 689999999999999999999999999999999999999999999999999999988643
Q ss_pred ----------CCCeEEEEcccHHHHHHHHHHHHHhHhhCCCCccEEEEcCCC-cHHHHHHHhcCCcEEEeChhHHHHhhc
Q 002135 299 ----------LSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDT-TQKDRMWLRDNARLLITNPDMLHMSIL 367 (961)
Q Consensus 299 ----------~~~~aLvl~PtraLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~-~~~~r~~l~~~~~IlItTPe~L~~~lL 367 (961)
.+.++||++||++|+.|+.++++++....+ +.+..+.|+. ...+...+..+++|+|+||++|...+.
T Consensus 89 ~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~ 166 (253)
T 1wrb_A 89 DLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTP--LRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIE 166 (253)
T ss_dssp CC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSS--CCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHH
T ss_pred ccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCC--ceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHH
Confidence 236899999999999999999999876543 5555555554 455556677789999999999977652
Q ss_pred CCCchhHHHhhhhhhhhhhcchhhhhhhhcceeEEEEecchhhhc-ccchHHHHHHHHHHHHhhcccCCCCcEEEeccCC
Q 002135 368 PYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKG-AFGCHTALILRRLCRLCSHVYGSDPSFVFSTATS 446 (961)
Q Consensus 368 ~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~i~~VVIDEaH~~~~-~fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl 446 (961)
.. ...+.++ ++||+||||++.+ +|+.++..++.++.. ..+.+.|++++|||+
T Consensus 167 ~~----~~~~~~~-------------------~~lViDEah~~~~~~~~~~~~~i~~~~~~----~~~~~~q~l~~SAT~ 219 (253)
T 1wrb_A 167 KN----KISLEFC-------------------KYIVLDEADRMLDMGFEPQIRKIIEESNM----PSGINRQTLMFSATF 219 (253)
T ss_dssp TT----SBCCTTC-------------------CEEEEETHHHHHHTTCHHHHHHHHHSSCC----CCGGGCEEEEEESSC
T ss_pred cC----CCChhhC-------------------CEEEEeCHHHHHhCchHHHHHHHHhhccC----CCCCCcEEEEEEEeC
Confidence 11 1123333 9999999999876 477777766553311 011257999999999
Q ss_pred CChH-HHHHHHc
Q 002135 447 ANPR-EHCMELA 457 (961)
Q Consensus 447 ~n~~-e~~~~L~ 457 (961)
++.. +.+..+.
T Consensus 220 ~~~~~~~~~~~l 231 (253)
T 1wrb_A 220 PKEIQKLAADFL 231 (253)
T ss_dssp CHHHHHHHHHHC
T ss_pred CHHHHHHHHHHc
Confidence 7544 3334443
No 70
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.94 E-value=6.9e-26 Score=243.66 Aligned_cols=194 Identities=22% Similarity=0.261 Sum_probs=152.3
Q ss_pred ccccccCCccccHHHHHHHHhCCCCCCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcCC-CCeEEEEcc
Q 002135 230 KAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDL-SSSALYMFP 308 (961)
Q Consensus 230 ~~~f~~l~~~L~~~l~~~L~~~g~~~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~~-~~~aLvl~P 308 (961)
..+|.++ +|++.+.++|+++||..|+++|.++++.+++|+++++++|||||||++|++|++..+...+ +.++||++|
T Consensus 42 ~~~f~~l--~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~P 119 (249)
T 3ber_A 42 TKTFKDL--GVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTP 119 (249)
T ss_dssp HCCTGGG--TCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECS
T ss_pred cCCHHHc--CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeC
Confidence 4568888 6999999999999999999999999999999999999999999999999999999887654 568999999
Q ss_pred cHHHHHHHHHHHHHhHhhCCCCccEEEEcCCCcH-HHHHHHhcCCcEEEeChhHHHHhhcCCCchhHHHhhhhhhhhhhc
Q 002135 309 TKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQ-KDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSL 387 (961)
Q Consensus 309 traLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~-~~r~~l~~~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~~~~ 387 (961)
|++|+.|+.++++++....+ +.+..+.|+... .+...+..+++|+|+||++|...+... .. ..+.+
T Consensus 120 tr~L~~q~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~-~~--~~l~~-------- 186 (249)
T 3ber_A 120 TRELAFQISEQFEALGSSIG--VQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENT-KG--FNLRA-------- 186 (249)
T ss_dssp SHHHHHHHHHHHHHHHGGGT--CCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHS-TT--CCCTT--------
T ss_pred CHHHHHHHHHHHHHHhccCC--eeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcC-CC--cCccc--------
Confidence 99999999999999887654 567777776654 344556678999999999997654211 00 11333
Q ss_pred chhhhhhhhcceeEEEEecchhhhc-ccchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCChH-HHHHHHc
Q 002135 388 VTTEVYLIFLFIRFVVIDEAHAYKG-AFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPR-EHCMELA 457 (961)
Q Consensus 388 ~~~~~~~~~~~i~~VVIDEaH~~~~-~fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~~-e~~~~L~ 457 (961)
+++||+||||++.+ +|+..+..+++.+ ..+.|++++|||+++.. +.++.++
T Consensus 187 -----------~~~lViDEah~l~~~~~~~~l~~i~~~~--------~~~~~~l~~SAT~~~~v~~~~~~~l 239 (249)
T 3ber_A 187 -----------LKYLVMDEADRILNMDFETEVDKILKVI--------PRDRKTFLFSATMTKKVQKLQRAAL 239 (249)
T ss_dssp -----------CCEEEECSHHHHHHTTCHHHHHHHHHSS--------CSSSEEEEEESSCCHHHHHHHHHHC
T ss_pred -----------cCEEEEcChhhhhccChHHHHHHHHHhC--------CCCCeEEEEeccCCHHHHHHHHHHC
Confidence 39999999999876 4766655554322 34679999999997654 3333343
No 71
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.94 E-value=3.1e-26 Score=253.15 Aligned_cols=189 Identities=15% Similarity=0.158 Sum_probs=146.8
Q ss_pred cccccCCccccHHHHHHHHhCCCCCCcHHHHHHHHHHhCC--CcEEEEecCCchhHHHHHHHHHHHHhcC-CCCeEEEEc
Q 002135 231 AVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAG--KNVVVATMTSSGKSLCYNLPVLEALSHD-LSSSALYMF 307 (961)
Q Consensus 231 ~~f~~l~~~L~~~l~~~L~~~g~~~l~~~Q~~ai~~il~G--~~vIv~apTGSGKTla~~Lpil~~l~~~-~~~~aLvl~ 307 (961)
.+|.++ +|++.+.++|..+||..|+++|.+||+.++.| +|++++||||||||++|++|+++.+... .++++|||+
T Consensus 92 ~~f~~l--~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~ 169 (300)
T 3fmo_B 92 KSFEEL--RLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLS 169 (300)
T ss_dssp CCSGGG--TCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEEC
T ss_pred CCHhhc--CCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEc
Confidence 457777 69999999999999999999999999999998 9999999999999999999999998754 345899999
Q ss_pred ccHHHHHHHHHHHHHhHhhCCCCccEEEEcCCCcHHHHHHHhcCCcEEEeChhHHHHhhcCCCchhHHHhhhhhhhhhhc
Q 002135 308 PTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSL 387 (961)
Q Consensus 308 PtraLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~~~r~~l~~~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~~~~ 387 (961)
||++||.|+++.++.+..... .+.+....|+...... ...+++|+|+||++|.+.+..... ..+.++
T Consensus 170 PtreLa~Q~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~--~~~~~~IlV~TP~~l~~~l~~~~~---~~l~~l------- 236 (300)
T 3fmo_B 170 PTYELALQTGKVIEQMGKFYP-ELKLAYAVRGNKLERG--QKISEQIVIGTPGTVLDWCSKLKF---IDPKKI------- 236 (300)
T ss_dssp SSHHHHHHHHHHHHHHTTTST-TCCEEEESTTCCCCTT--CCCCCSEEEECHHHHHHHHTTTCC---CCGGGC-------
T ss_pred CcHHHHHHHHHHHHHHHhhCC-CcEEEEEeCCccHhhh--hcCCCCEEEECHHHHHHHHHhcCC---CChhhc-------
Confidence 999999999999999876543 3667777766543321 245689999999999876632111 113444
Q ss_pred chhhhhhhhcceeEEEEecchhhhc--ccchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCChHHHHH
Q 002135 388 VTTEVYLIFLFIRFVVIDEAHAYKG--AFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCM 454 (961)
Q Consensus 388 ~~~~~~~~~~~i~~VVIDEaH~~~~--~fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~~e~~~ 454 (961)
++|||||||++.+ +|+.++..+++. ...+.|+|++|||+++....+.
T Consensus 237 ------------~~lVlDEad~l~~~~~~~~~~~~i~~~--------~~~~~q~i~~SAT~~~~v~~~a 285 (300)
T 3fmo_B 237 ------------KVFVLDEADVMIATQGHQDQSIRIQRM--------LPRNCQMLLFSATFEDSVWKFA 285 (300)
T ss_dssp ------------SEEEETTHHHHHHSTTHHHHHHHHHTT--------SCTTCEEEEEESCCCHHHHHHH
T ss_pred ------------eEEEEeCHHHHhhccCcHHHHHHHHHh--------CCCCCEEEEEeccCCHHHHHHH
Confidence 9999999999975 355444433322 2456899999999987654333
No 72
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.93 E-value=1.3e-25 Score=236.22 Aligned_cols=196 Identities=17% Similarity=0.227 Sum_probs=148.6
Q ss_pred ccccccCCccccHHHHHHHHhCCCCCCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcCC-CCeEEEEcc
Q 002135 230 KAVLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDL-SSSALYMFP 308 (961)
Q Consensus 230 ~~~f~~l~~~L~~~l~~~L~~~g~~~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~~-~~~aLvl~P 308 (961)
...|.++ +|++.+.++|++.||..|+++|.++++.+++|+++++++|||||||++|++|++..+.... +.++||++|
T Consensus 13 ~~~f~~~--~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 90 (220)
T 1t6n_A 13 SSGFRDF--LLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCH 90 (220)
T ss_dssp -CCSTTS--CCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECS
T ss_pred CCCHhhc--CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeC
Confidence 3468888 6999999999999999999999999999999999999999999999999999999886543 458999999
Q ss_pred cHHHHHHHHHHHHHhHhhCCCCccEEEEcCCCcHHHH-HHHhc-CCcEEEeChhHHHHhhcCCCchhHHHhhhhhhhhhh
Q 002135 309 TKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDR-MWLRD-NARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFS 386 (961)
Q Consensus 309 traLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~~~r-~~l~~-~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~~~ 386 (961)
|++|+.|+.++++++..... ++.+..+.|+...... ..+.. .++|+|+||++|...+... ...+.++
T Consensus 91 t~~L~~q~~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~----~~~~~~~------ 159 (220)
T 1t6n_A 91 TRELAFQISKEYERFSKYMP-NVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK----SLNLKHI------ 159 (220)
T ss_dssp CHHHHHHHHHHHHHHTTTST-TCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTT----SSCCTTC------
T ss_pred CHHHHHHHHHHHHHHHhhCC-CceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhC----CCCcccC------
Confidence 99999999999999876542 4778888888765433 33433 4799999999997654211 1123344
Q ss_pred cchhhhhhhhcceeEEEEecchhhhcccchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCChH-HHHHHHc
Q 002135 387 LVTTEVYLIFLFIRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPR-EHCMELA 457 (961)
Q Consensus 387 ~~~~~~~~~~~~i~~VVIDEaH~~~~~fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~~-e~~~~L~ 457 (961)
++||+||||++.+.. .+...+..+.+. ...+.|++++|||+++.. +.++.++
T Consensus 160 -------------~~lViDEah~~~~~~--~~~~~~~~i~~~----~~~~~~~i~~SAT~~~~~~~~~~~~~ 212 (220)
T 1t6n_A 160 -------------KHFILDECDKMLEQL--DMRRDVQEIFRM----TPHEKQVMMFSATLSKEIRPVCRKFM 212 (220)
T ss_dssp -------------CEEEEESHHHHHSSH--HHHHHHHHHHHT----SCSSSEEEEEESCCCTTTHHHHHTTC
T ss_pred -------------CEEEEcCHHHHhccc--CcHHHHHHHHHh----CCCcCeEEEEEeecCHHHHHHHHHHc
Confidence 999999999997521 122223333222 134689999999998754 3344443
No 73
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.93 E-value=1.2e-25 Score=233.95 Aligned_cols=190 Identities=22% Similarity=0.246 Sum_probs=147.7
Q ss_pred ccccCCccccHHHHHHHHhCCCCCCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhc----CCCCeEEEEc
Q 002135 232 VLVEIPDALLDNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSH----DLSSSALYMF 307 (961)
Q Consensus 232 ~f~~l~~~L~~~l~~~L~~~g~~~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~----~~~~~aLvl~ 307 (961)
+|.++ +|++.+.+.|++.|+..|+++|.++++.+++|+++++++|||||||++|++|++..+.. ..+.++||++
T Consensus 2 ~f~~~--~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~ 79 (207)
T 2gxq_A 2 EFKDF--PLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLT 79 (207)
T ss_dssp CGGGS--CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEEC
T ss_pred Chhhc--CCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEE
Confidence 47777 59999999999999999999999999999999999999999999999999999998864 3467899999
Q ss_pred ccHHHHHHHHHHHHHhHhhCCCCccEEEEcCCC-cHHHHHHHhcCCcEEEeChhHHHHhhcCCCchhHHHhhhhhhhhhh
Q 002135 308 PTKALAQDQLRALLAMTKAFDASIDIGVYDGDT-TQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFS 386 (961)
Q Consensus 308 PtraLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~-~~~~r~~l~~~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~~~ 386 (961)
||++|+.|+.+++.++... +.+..+.|+. ...+...+..+++|+|+||+++...+... ...+.+
T Consensus 80 P~~~L~~q~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~----~~~~~~------- 144 (207)
T 2gxq_A 80 PTRELALQVASELTAVAPH----LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQG----VLDLSR------- 144 (207)
T ss_dssp SSHHHHHHHHHHHHHHCTT----SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHT----SSCCTT-------
T ss_pred CCHHHHHHHHHHHHHHhhc----ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcC----Ccchhh-------
Confidence 9999999999999988653 4556666654 44555666778999999999987654210 011233
Q ss_pred cchhhhhhhhcceeEEEEecchhhhc-ccchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCChH-HHHHHHcc
Q 002135 387 LVTTEVYLIFLFIRFVVIDEAHAYKG-AFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPR-EHCMELAN 458 (961)
Q Consensus 387 ~~~~~~~~~~~~i~~VVIDEaH~~~~-~fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~~-e~~~~L~~ 458 (961)
+++||+||||++.+ +|+..+..+++.+ ..+.|++++|||+++.. +.++.+.+
T Consensus 145 ------------~~~iViDEah~~~~~~~~~~~~~i~~~~--------~~~~~~i~~SAT~~~~~~~~~~~~~~ 198 (207)
T 2gxq_A 145 ------------VEVAVLDEADEMLSMGFEEEVEALLSAT--------PPSRQTLLFSATLPSWAKRLAERYMK 198 (207)
T ss_dssp ------------CSEEEEESHHHHHHTTCHHHHHHHHHTS--------CTTSEEEEECSSCCHHHHHHHHHHCS
T ss_pred ------------ceEEEEEChhHhhccchHHHHHHHHHhC--------CccCeEEEEEEecCHHHHHHHHHHcC
Confidence 39999999999875 3665555443321 34679999999997644 34444443
No 74
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.92 E-value=4.9e-23 Score=250.72 Aligned_cols=119 Identities=20% Similarity=0.135 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHCCCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEecc
Q 002135 512 SEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATN 591 (961)
Q Consensus 512 ~~~~~ll~~l~~~g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~ 591 (961)
..+...+......+.++||||+|++.|+.+++.|.+ .+..+..+||++++.+|.+++++|++|+++|||||+
T Consensus 426 ~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~--------~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~ 497 (664)
T 1c4o_A 426 LDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVE--------HGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN 497 (664)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHH--------TTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC
T ss_pred HHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHh--------cCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC
Confidence 344444555556788999999999999999998876 344688899999999999999999999999999999
Q ss_pred ccccccccCCccEEEEeCC-----CCCHhhHHHHhccCCCCCCCceEEEEeeC
Q 002135 592 ALELGIDVGHIDVTLHLGF-----PGSIASLWQQAGRSGRRERPSLAVYVAFE 639 (961)
Q Consensus 592 aLe~GIDIp~vd~VI~~~~-----P~s~~sy~QR~GRAGR~g~~g~~i~l~~~ 639 (961)
++++|+|+|++++||+++. |.|..+|+||+|||||. .+|.+++++..
T Consensus 498 ~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~ 549 (664)
T 1c4o_A 498 LLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-ARGEVWLYADR 549 (664)
T ss_dssp CCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTS-TTCEEEEECSS
T ss_pred hhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcC-CCCEEEEEEcC
Confidence 9999999999999999997 99999999999999999 47888877643
No 75
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.90 E-value=1.3e-21 Score=238.05 Aligned_cols=120 Identities=20% Similarity=0.197 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHCCCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEecc
Q 002135 512 SEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATN 591 (961)
Q Consensus 512 ~~~~~ll~~l~~~g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~ 591 (961)
..+...+......+.++||||+|++.|+.+++.|++ .+..+..+||++++.+|.+++++|++|+++|||||+
T Consensus 432 ~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~--------~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~ 503 (661)
T 2d7d_A 432 DDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKE--------IGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN 503 (661)
T ss_dssp HHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHH--------TTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC
T ss_pred HHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHh--------cCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc
Confidence 334444445555678999999999999999998876 344688899999999999999999999999999999
Q ss_pred ccccccccCCccEEEEeCC-----CCCHhhHHHHhccCCCCCCCceEEEEeeCC
Q 002135 592 ALELGIDVGHIDVTLHLGF-----PGSIASLWQQAGRSGRRERPSLAVYVAFEG 640 (961)
Q Consensus 592 aLe~GIDIp~vd~VI~~~~-----P~s~~sy~QR~GRAGR~g~~g~~i~l~~~~ 640 (961)
++++|+|+|++++||+++. |.|..+|+||+|||||. .+|.+++++...
T Consensus 504 ~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~ 556 (661)
T 2d7d_A 504 LLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-AEGRVIMYADKI 556 (661)
T ss_dssp CCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSC
T ss_pred hhhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCC
Confidence 9999999999999999997 99999999999999998 789998776543
No 76
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.88 E-value=1e-20 Score=226.87 Aligned_cols=138 Identities=16% Similarity=0.130 Sum_probs=106.7
Q ss_pred hCCCCCCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHHHHHHHHHHHHHhHhhCCC
Q 002135 250 STGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDA 329 (961)
Q Consensus 250 ~~g~~~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~PtraLa~qq~~~l~~l~~~~~~ 329 (961)
.+|+ .|+++|..+++.+++|+ |+.+.||||||++|.+|++..... +..+++++||++||.|.++.+..+...++
T Consensus 75 ~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~--G~qv~VvTPTreLA~Qdae~m~~l~~~lG- 148 (997)
T 2ipc_A 75 YLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT--GKGVHVVTVNDYLARRDAEWMGPVYRGLG- 148 (997)
T ss_dssp HTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT--CSCCEEEESSHHHHHHHHHHHHHHHHTTT-
T ss_pred HhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh--CCCEEEEeCCHHHHHHHHHHHHHHHHhcC-
Confidence 4899 89999999999999998 999999999999999999654443 56799999999999999999999998776
Q ss_pred CccEEEEcCCCcHHHHHHHhcCCcEEEeChhHH-HHhhcCCCc--hhHHHhhhhhhhhhhcchhhhhhhhcceeEEEEec
Q 002135 330 SIDIGVYDGDTTQKDRMWLRDNARLLITNPDML-HMSILPYHG--QFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDE 406 (961)
Q Consensus 330 ~i~v~~~~Gd~~~~~r~~l~~~~~IlItTPe~L-~~~lL~~~~--~~~~~L~~l~~~~~~~~~~~~~~~~~~i~~VVIDE 406 (961)
+++++..|+.+..++. ...+++|+++||+.| .+.|..+.. .-...++ .-..+.++||||
T Consensus 149 -Lsv~~i~Gg~~~~~r~-~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r----------------~d~~l~~lIIDE 210 (997)
T 2ipc_A 149 -LSVGVIQHASTPAERR-KAYLADVTYVTNSELGFDYLRDNMAISPDQLVLR----------------HDHPLHYAIIDE 210 (997)
T ss_dssp -CCEEECCTTCCHHHHH-HHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSC----------------SSSSSCEEEETT
T ss_pred -CeEEEEeCCCCHHHHH-HHcCCCEEEECchhhhhHHHHHhhhcchhhcccc----------------cCCCcceEEEec
Confidence 7788888877765544 344799999999998 454421100 0001122 000349999999
Q ss_pred chhhh
Q 002135 407 AHAYK 411 (961)
Q Consensus 407 aH~~~ 411 (961)
+|.++
T Consensus 211 aDsmL 215 (997)
T 2ipc_A 211 VDSIL 215 (997)
T ss_dssp HHHHT
T ss_pred hHHHH
Confidence 99986
No 77
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.87 E-value=3.1e-21 Score=202.19 Aligned_cols=159 Identities=18% Similarity=0.232 Sum_probs=130.4
Q ss_pred CCcHHHHHHHHHHHHHCCCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEE
Q 002135 508 SSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGV 587 (961)
Q Consensus 508 ~~~~~~~~~ll~~l~~~g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vL 587 (961)
..+...+..++.. ..+.++||||++++.++.+++.|.. .+..+..+||++++.+|+.+++.|++|+.+||
T Consensus 16 ~~k~~~l~~ll~~--~~~~~~lVF~~~~~~~~~l~~~L~~--------~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vl 85 (212)
T 3eaq_A 16 RGRLEVLSDLLYV--ASPDRAMVFTRTKAETEEIAQGLLR--------LGHPAQALHGDLSQGERERVLGAFRQGEVRVL 85 (212)
T ss_dssp TSHHHHHHHHHHH--HCCSCEEEECSSHHHHHHHHHHHHH--------HTCCEEEECSSSCHHHHHHHHHHHHSSSCCEE
T ss_pred HHHHHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHH--------cCCCEEEEECCCCHHHHHHHHHHHHCCCCeEE
Confidence 4555555665543 2467999999999999999998876 24578899999999999999999999999999
Q ss_pred EeccccccccccCCccEEEEeCCCCCHhhHHHHhccCCCCCCCceEEEEeeCCcchhHHHhchHHhhcCCCcccccCCCC
Q 002135 588 AATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQN 667 (961)
Q Consensus 588 VAT~aLe~GIDIp~vd~VI~~~~P~s~~sy~QR~GRAGR~g~~g~~i~l~~~~~~d~~~~~~~e~l~~~~ie~~~~~~~n 667 (961)
|||+++++|||+|++++||++|+|.|..+|+||+|||||.|++|.+++++. +.+..+.+..++.++..++.... +..
T Consensus 86 vaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~--~~~~~~~~~i~~~~~~~~~~~~~-~~~ 162 (212)
T 3eaq_A 86 VATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYG--PRERRDVEALERAVGRRFKRVNP-PTP 162 (212)
T ss_dssp EECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEEC--GGGHHHHHHHHHHHSSCCEECCC-CCH
T ss_pred EecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEc--hhHHHHHHHHHHHhcCcCeecCC-CCH
Confidence 999999999999999999999999999999999999999999999997774 45667778888888888776554 344
Q ss_pred HHHHHHHHHHHH
Q 002135 668 HKVLEQHLVCAA 679 (961)
Q Consensus 668 ~~vl~~~l~~aa 679 (961)
+++....+....
T Consensus 163 ~ei~~~~~~~~~ 174 (212)
T 3eaq_A 163 EEVLEAKWRHLL 174 (212)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 566655554443
No 78
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.86 E-value=1.6e-21 Score=197.57 Aligned_cols=145 Identities=16% Similarity=0.177 Sum_probs=122.3
Q ss_pred cHHHHHHHHHHHHHCCCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEe
Q 002135 510 PISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAA 589 (961)
Q Consensus 510 ~~~~~~~ll~~l~~~g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVA 589 (961)
+...+..++... .+.++||||++++.++.++..|.. .+..+..+||++++.+|..+++.|++|+.++|||
T Consensus 18 K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~--------~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLva 87 (172)
T 1t5i_A 18 KNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVE--------QNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVA 87 (172)
T ss_dssp HHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHH--------TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEE
T ss_pred HHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHh--------cCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEE
Confidence 444444544432 456999999999999999998876 3457899999999999999999999999999999
Q ss_pred ccccccccccCCccEEEEeCCCCCHhhHHHHhccCCCCCCCceEEEEeeCCcchhHHHhchHHhhcCCCcccccCC
Q 002135 590 TNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDA 665 (961)
Q Consensus 590 T~aLe~GIDIp~vd~VI~~~~P~s~~sy~QR~GRAGR~g~~g~~i~l~~~~~~d~~~~~~~e~l~~~~ie~~~~~~ 665 (961)
|+++++|+|+|++++||++|+|.|..+|+||+||+||.|++|.+++++.. ..+..+.+.+++.+..+++++..+.
T Consensus 88 T~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~ 162 (172)
T 1t5i_A 88 TNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSD-ENDAKILNDVQDRFEVNISELPDEI 162 (172)
T ss_dssp SSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECS-HHHHHHHHHHHHHHCCCEEECC---
T ss_pred CCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcC-hhHHHHHHHHHHHHhcchhhCChhh
Confidence 99999999999999999999999999999999999999999999987743 3366777888888888887766543
No 79
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.86 E-value=6.9e-21 Score=191.05 Aligned_cols=140 Identities=21% Similarity=0.326 Sum_probs=120.0
Q ss_pred CcHHHHHHHHHHHHHCCCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEE
Q 002135 509 SPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVA 588 (961)
Q Consensus 509 ~~~~~~~~ll~~l~~~g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLV 588 (961)
.+...+..++.. ..+.++||||++++.++.+++.|++ .+..+..+||++++.+|..++++|++|+.++||
T Consensus 21 ~K~~~L~~ll~~--~~~~~~lVF~~~~~~~~~l~~~L~~--------~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv 90 (163)
T 2hjv_A 21 NKFSLLKDVLMT--ENPDSCIIFCRTKEHVNQLTDELDD--------LGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLV 90 (163)
T ss_dssp GHHHHHHHHHHH--HCCSSEEEECSSHHHHHHHHHHHHH--------TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEE
T ss_pred HHHHHHHHHHHh--cCCCcEEEEECCHHHHHHHHHHHHH--------cCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEE
Confidence 344455555544 2567999999999999999998876 355789999999999999999999999999999
Q ss_pred eccccccccccCCccEEEEeCCCCCHhhHHHHhccCCCCCCCceEEEEeeCCcchhHHHhchHHhhcCCCcc
Q 002135 589 ATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIEC 660 (961)
Q Consensus 589 AT~aLe~GIDIp~vd~VI~~~~P~s~~sy~QR~GRAGR~g~~g~~i~l~~~~~~d~~~~~~~e~l~~~~ie~ 660 (961)
||+++++|+|+|++++||++++|.+..+|+||+||+||.|++|.+++++. +.+..+.+..++.++.+++.
T Consensus 91 ~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~--~~~~~~~~~i~~~~~~~~~~ 160 (163)
T 2hjv_A 91 ATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVT--AFEKRFLADIEEYIGFEIQK 160 (163)
T ss_dssp ECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEEC--GGGHHHHHHHHHHHTSCCEE
T ss_pred ECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEec--HHHHHHHHHHHHHHCCCcCc
Confidence 99999999999999999999999999999999999999999999987764 45666777777777776643
No 80
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.85 E-value=8.7e-21 Score=208.72 Aligned_cols=161 Identities=18% Similarity=0.227 Sum_probs=130.7
Q ss_pred CCcHHHHHHHHHHHHHCCCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEE
Q 002135 508 SSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGV 587 (961)
Q Consensus 508 ~~~~~~~~~ll~~l~~~g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vL 587 (961)
..+...+..++... .+.++||||++++.++.++..|.. .+..+..+||++++.+|+.+++.|++|+++||
T Consensus 13 ~~K~~~L~~ll~~~--~~~~~LVF~~t~~~~~~l~~~L~~--------~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vL 82 (300)
T 3i32_A 13 RGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLR--------LGHPAQALHGDMSQGERERVMGAFRQGEVRVL 82 (300)
T ss_dssp SSHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHT--------TTCCEEEECSCCCTHHHHHHHHHHHHTSCCEE
T ss_pred HHHHHHHHHHHHhc--CCCCEEEEECCHHHHHHHHHHHHh--------CCCCEEEEeCCCCHHHHHHHHHHhhcCCceEE
Confidence 34555555655443 467999999999999999988765 35578999999999999999999999999999
Q ss_pred EeccccccccccCCccEEEEeCCCCCHhhHHHHhccCCCCCCCceEEEEeeCCcchhHHHhchHHhhcCCCcccccCCCC
Q 002135 588 AATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDAQN 667 (961)
Q Consensus 588 VAT~aLe~GIDIp~vd~VI~~~~P~s~~sy~QR~GRAGR~g~~g~~i~l~~~~~~d~~~~~~~e~l~~~~ie~~~~~~~n 667 (961)
|||+++++|||+|++++||++|+|.+..+|+||+|||||.|++|.+++++. +.+..+.+.+++.++..++.... +..
T Consensus 83 VaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~--~~e~~~~~~ie~~~~~~~~~~~~-~~~ 159 (300)
T 3i32_A 83 VATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYG--PRERRDVEALERAVGRRFKRVNP-PTP 159 (300)
T ss_dssp EECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEEC--SSTHHHHHHHHHHHTCCCEECCC-CCH
T ss_pred EEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeC--hHHHHHHHHHHHHhCCcceEeCC-CCH
Confidence 999999999999999999999999999999999999999999999998774 45667778888888888876543 456
Q ss_pred HHHHHHHHHHHHhc
Q 002135 668 HKVLEQHLVCAALE 681 (961)
Q Consensus 668 ~~vl~~~l~~aa~e 681 (961)
++++...+..+..+
T Consensus 160 ~ei~~~~~~~~~~~ 173 (300)
T 3i32_A 160 EEVLEAKWRHLLAR 173 (300)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777665544
No 81
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.85 E-value=9e-21 Score=190.55 Aligned_cols=144 Identities=21% Similarity=0.323 Sum_probs=118.2
Q ss_pred cHHHHHHHHHHHHHCCCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEe
Q 002135 510 PISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAA 589 (961)
Q Consensus 510 ~~~~~~~ll~~l~~~g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVA 589 (961)
+...+..++... .+.++||||++++.++.++..|+. .+..+..+||++++.+|.++++.|++|+.++|||
T Consensus 17 K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~--------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~ 86 (165)
T 1fuk_A 17 KYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRN--------DKFTVSAIYSDLPQQERDTIMKEFRSGSSRILIS 86 (165)
T ss_dssp HHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHH--------TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEE
T ss_pred HHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHH--------cCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEE
Confidence 444455555442 457999999999999999998876 3457899999999999999999999999999999
Q ss_pred ccccccccccCCccEEEEeCCCCCHhhHHHHhccCCCCCCCceEEEEeeCCcchhHHHhchHHhhcCCCcccccCC
Q 002135 590 TNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHIDA 665 (961)
Q Consensus 590 T~aLe~GIDIp~vd~VI~~~~P~s~~sy~QR~GRAGR~g~~g~~i~l~~~~~~d~~~~~~~e~l~~~~ie~~~~~~ 665 (961)
|+++++|+|+|++++||++|+|.+..+|+||+||+||.|++|.+++++... +....+..++.++..+++...+.
T Consensus 87 T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 160 (165)
T 1fuk_A 87 TDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNE--DVGAMRELEKFYSTQIEELPSDI 160 (165)
T ss_dssp EGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETT--THHHHHHHHHHSSCCCEECCSCC
T ss_pred cChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcch--HHHHHHHHHHHHccCccccCccH
Confidence 999999999999999999999999999999999999999999999887644 44556677888888887766554
No 82
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.85 E-value=9.2e-21 Score=192.38 Aligned_cols=130 Identities=20% Similarity=0.265 Sum_probs=111.6
Q ss_pred CCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEeccccccccccCCccE
Q 002135 525 GLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHIDV 604 (961)
Q Consensus 525 g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~aLe~GIDIp~vd~ 604 (961)
+.++||||++++.|+.++..|+. .+..+..+||++++.+|..+++.|++|+.++||||+++++|+|+|++++
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~--------~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~ 105 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQ--------DGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTI 105 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHT--------TTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCSCCTTTCCTTEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHH--------cCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecchhcCCCcccCCE
Confidence 56999999999999999988865 3457899999999999999999999999999999999999999999999
Q ss_pred EEEeCCC------CCHhhHHHHhccCCCCCCCceEEEEeeCCcchhHHHhchHHhhcCCCcccccC
Q 002135 605 TLHLGFP------GSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHID 664 (961)
Q Consensus 605 VI~~~~P------~s~~sy~QR~GRAGR~g~~g~~i~l~~~~~~d~~~~~~~e~l~~~~ie~~~~~ 664 (961)
||++|+| .+..+|+||+||+||.|++|.+++++.. .+..+++..++.++.++++..++
T Consensus 106 Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~ 169 (175)
T 2rb4_A 106 VVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEV--DELPSLMKIQDHFNSSIKQLNAE 169 (175)
T ss_dssp EEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECG--GGHHHHHHHHHHHTCCCEEECSS
T ss_pred EEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEcc--chHHHHHHHHHHhcCcccccCCc
Confidence 9999999 9999999999999999999999877744 45566777788888877666544
No 83
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.83 E-value=3.6e-20 Score=190.90 Aligned_cols=129 Identities=17% Similarity=0.216 Sum_probs=107.2
Q ss_pred HHHHHHHCCCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEeccccccc
Q 002135 517 LFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELG 596 (961)
Q Consensus 517 ll~~l~~~g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~aLe~G 596 (961)
++..+...+.++||||++++.++.++..|+. .+..+..+||++++.+|.++++.|++|+.++||||+++++|
T Consensus 46 L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~--------~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~G 117 (191)
T 2p6n_A 46 LLECLQKTPPPVLIFAEKKADVDAIHEYLLL--------KGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKG 117 (191)
T ss_dssp HHHHHTTSCSCEEEECSCHHHHHHHHHHHHH--------HTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTT
T ss_pred HHHHHHhCCCCEEEEECCHHHHHHHHHHHHH--------cCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcC
Confidence 3333334567999999999999999998876 24568899999999999999999999999999999999999
Q ss_pred cccCCccEEEEeCCCCCHhhHHHHhccCCCCCCCceEEEEeeCCcchhHHHhchHHhh
Q 002135 597 IDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLF 654 (961)
Q Consensus 597 IDIp~vd~VI~~~~P~s~~sy~QR~GRAGR~g~~g~~i~l~~~~~~d~~~~~~~e~l~ 654 (961)
+|+|++++||++++|.+..+|+||+||+||.|++|.+++++... .+..+.+..++.+
T Consensus 118 ldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~-~~~~~~~~l~~~l 174 (191)
T 2p6n_A 118 LDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKA-CDESVLMDLKALL 174 (191)
T ss_dssp CCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTT-SCHHHHHHHHHHH
T ss_pred CCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCc-hhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999877543 2444454455544
No 84
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.82 E-value=1.5e-20 Score=196.10 Aligned_cols=173 Identities=19% Similarity=0.167 Sum_probs=112.7
Q ss_pred CCCCCCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcC----CCCeEEEEcccHHHHHH-HHHHHHHhHh
Q 002135 251 TGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHD----LSSSALYMFPTKALAQD-QLRALLAMTK 325 (961)
Q Consensus 251 ~g~~~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~----~~~~aLvl~PtraLa~q-q~~~l~~l~~ 325 (961)
.....|+++|.++++.+++++++++.+|||+|||++|+++++..+... .+.++||++|+++|+.| +.+.+.++..
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 344589999999999999999999999999999999999999877542 36789999999999999 6667777654
Q ss_pred hCCCCccEEEEcCCCcHHH-HHHHhcCCcEEEeChhHHHHhhcCCCchh--HHHhhhhhhhhhhcchhhhhhhhcceeEE
Q 002135 326 AFDASIDIGVYDGDTTQKD-RMWLRDNARLLITNPDMLHMSILPYHGQF--SRILSNLRLIAFSLVTTEVYLIFLFIRFV 402 (961)
Q Consensus 326 ~~~~~i~v~~~~Gd~~~~~-r~~l~~~~~IlItTPe~L~~~lL~~~~~~--~~~L~~l~~~~~~~~~~~~~~~~~~i~~V 402 (961)
. .+.+..+.|+..... ...+..+++|+|+||++|...+....... ...+.+ +++|
T Consensus 109 ~---~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~-------------------~~~i 166 (216)
T 3b6e_A 109 K---WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSD-------------------FSLI 166 (216)
T ss_dssp T---TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGG-------------------CSEE
T ss_pred c---CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhc-------------------ccEE
Confidence 3 467788888764322 22344568999999999976653221100 012333 3999
Q ss_pred EEecchhhhcc-cchHH-HHHH-HHHHHHh----hcccCCCCcEEEeccC
Q 002135 403 VIDEAHAYKGA-FGCHT-ALIL-RRLCRLC----SHVYGSDPSFVFSTAT 445 (961)
Q Consensus 403 VIDEaH~~~~~-fg~~~-~~il-rrL~~~~----~~~~~~~~q~I~lSAT 445 (961)
||||||++... +...+ ..++ .+++... .......+++|++|||
T Consensus 167 IiDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 167 IIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp EETTC-------CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred EEECchhhccCCcHHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 99999999652 22222 2211 1111111 0001256899999998
No 85
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.82 E-value=3.4e-20 Score=190.10 Aligned_cols=135 Identities=18% Similarity=0.179 Sum_probs=98.5
Q ss_pred cHHHHHHHHHHHHHCCCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEe
Q 002135 510 PISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAA 589 (961)
Q Consensus 510 ~~~~~~~ll~~l~~~g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVA 589 (961)
+...+..++... ..+.++||||++++.++.++..|+. .+..+..+||++++.+|.++++.|++|+.++|||
T Consensus 32 K~~~L~~ll~~~-~~~~k~lVF~~~~~~~~~l~~~L~~--------~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLva 102 (185)
T 2jgn_A 32 KRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYH--------EGYACTSIHGDRSQRDREEALHQFRSGKSPILVA 102 (185)
T ss_dssp HHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHH--------TTCCEEEEC--------CHHHHHHHHTSSSEEEE
T ss_pred HHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHH--------cCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEE
Confidence 344444554432 2467999999999999999998876 3457899999999999999999999999999999
Q ss_pred ccccccccccCCccEEEEeCCCCCHhhHHHHhccCCCCCCCceEEEEeeCCcchhHHHhchHHhhc
Q 002135 590 TNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFK 655 (961)
Q Consensus 590 T~aLe~GIDIp~vd~VI~~~~P~s~~sy~QR~GRAGR~g~~g~~i~l~~~~~~d~~~~~~~e~l~~ 655 (961)
|+++++|+|+|++++||++|+|.|..+|+||+||+||.|++|.+++++.. .+..+.+...+.+.
T Consensus 103 T~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~--~~~~~~~~l~~~l~ 166 (185)
T 2jgn_A 103 TAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNE--RNINITKDLLDLLV 166 (185)
T ss_dssp EC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECG--GGGGGHHHHHHHHH
T ss_pred cChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEch--hhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999887754 34444444455443
No 86
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.82 E-value=3.2e-19 Score=212.72 Aligned_cols=67 Identities=15% Similarity=0.176 Sum_probs=55.2
Q ss_pred CCCCCCcHHHHHHHHH----HhCCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHHHHHHHHHHHHHh
Q 002135 251 TGISKLYSHQAESIMA----SLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAM 323 (961)
Q Consensus 251 ~g~~~l~~~Q~~ai~~----il~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~PtraLa~qq~~~l~~l 323 (961)
.|| .++++|.+++.. +..|+++++.||||+|||++|++|++.. +.+++|++||++|+.|+.+++..+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~-----~~~~~~~~~t~~l~~q~~~~~~~l 74 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL-----KKKVLIFTRTHSQLDSIYKNAKLL 74 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH-----TCEEEEEESCHHHHHHHHHHHGGG
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC-----CCcEEEEcCCHHHHHHHHHHHHhc
Confidence 477 799999998765 4588999999999999999999999764 579999999999999999888764
No 87
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.68 E-value=3.3e-21 Score=194.74 Aligned_cols=131 Identities=21% Similarity=0.337 Sum_probs=113.4
Q ss_pred CCCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEeccccccccccCCcc
Q 002135 524 HGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALELGIDVGHID 603 (961)
Q Consensus 524 ~g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~aLe~GIDIp~vd 603 (961)
.+.++||||++++.++.++..|+. .+..+..+||++++.+|..+++.|++|+.++||||+++++|+|+|+++
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~--------~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~ 100 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLRE--------AGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVS 100 (170)
Confidence 356899999999999999988865 244688999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCHhhHHHHhccCCCCCCCceEEEEeeCCcchhHHHhchHHhhcCCCcccccC
Q 002135 604 VTLHLGFPGSIASLWQQAGRSGRRERPSLAVYVAFEGPLDQYFMKYPEKLFKSPIECCHID 664 (961)
Q Consensus 604 ~VI~~~~P~s~~sy~QR~GRAGR~g~~g~~i~l~~~~~~d~~~~~~~e~l~~~~ie~~~~~ 664 (961)
+||++++|.|..+|+||+||+||.|++|.+++++.. .+..+.+..++.++.+++...++
T Consensus 101 ~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 159 (170)
T 2yjt_D 101 HVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEA--HDHLLLGKVGRYIEEPIKARVID 159 (170)
Confidence 999999999999999999999999999999877643 35556666777776666555444
No 88
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.77 E-value=8.9e-19 Score=191.54 Aligned_cols=162 Identities=16% Similarity=0.161 Sum_probs=118.5
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHHHHHHHHHHHHHhHhhCCCCccEE
Q 002135 255 KLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIG 334 (961)
Q Consensus 255 ~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~PtraLa~qq~~~l~~l~~~~~~~i~v~ 334 (961)
+|+++|.++++.++++++.++++|||||||+++.+++...+.. ...++||++||++|+.|+.+++.++.... ...+.
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-~~~~~lil~Pt~~L~~q~~~~l~~~~~~~--~~~~~ 189 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-YEGKILIIVPTTALTTQMADDFVDYRLFS--HAMIK 189 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH-CSSEEEEECSSHHHHHHHHHHHHHHTSCC--GGGEE
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhcccc--cceEE
Confidence 7999999999999988999999999999999999988877654 34589999999999999999999875422 24555
Q ss_pred EEcCCCcHHHHHHHhcCCcEEEeChhHHHHhhcCCCchhHHHhhhhhhhhhhcchhhhhhhhcceeEEEEecchhhhccc
Q 002135 335 VYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGAF 414 (961)
Q Consensus 335 ~~~Gd~~~~~r~~l~~~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~i~~VVIDEaH~~~~~f 414 (961)
.+.|+..... .....++|+|+||+++.... ...+.++ ++||+||||++.+
T Consensus 190 ~~~~~~~~~~--~~~~~~~I~v~T~~~l~~~~-------~~~~~~~-------------------~~vIiDEaH~~~~-- 239 (282)
T 1rif_A 190 KIGGGASKDD--KYKNDAPVVVGTWQTVVKQP-------KEWFSQF-------------------GMMMNDECHLATG-- 239 (282)
T ss_dssp ECSTTCSSTT--CCCTTCSEEEECHHHHTTSC-------GGGGGGE-------------------EEEEEETGGGCCH--
T ss_pred EEeCCCcchh--hhccCCcEEEEchHHHHhhH-------HHHHhhC-------------------CEEEEECCccCCc--
Confidence 5555443322 22346899999999874321 1234444 9999999999864
Q ss_pred chHHHHHHHHHHHHhhcccCCCCcEEEeccCCCChHHHHHHHcc
Q 002135 415 GCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMELAN 458 (961)
Q Consensus 415 g~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~~e~~~~L~~ 458 (961)
..+..+ ...+ ....+++++|||+++..+....+++
T Consensus 240 -~~~~~i-------l~~~-~~~~~~l~lSATp~~~~~~~~~l~~ 274 (282)
T 1rif_A 240 -KSISSI-------ISGL-NNCMFKFGLSGSLRDGKANIMQYVG 274 (282)
T ss_dssp -HHHHHH-------TTTC-TTCCEEEEECSSCCTTSTTHHHHHH
T ss_pred -ccHHHH-------HHHh-hcCCeEEEEeCCCCCcchHHHHHHH
Confidence 233322 2221 2367999999999887765555543
No 89
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.76 E-value=6.7e-19 Score=187.36 Aligned_cols=177 Identities=14% Similarity=0.166 Sum_probs=119.8
Q ss_pred HHHHHHHHhCCCCCCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcCC---CCeEEEEcccHHHHHHHHH
Q 002135 242 DNTKSALKSTGISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDL---SSSALYMFPTKALAQDQLR 318 (961)
Q Consensus 242 ~~l~~~L~~~g~~~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~~---~~~aLvl~PtraLa~qq~~ 318 (961)
+.+.+.++......++++|.++++.+.+|++++++||||||||+++.+++++.+.... +.+++++.|+++|+.|+.+
T Consensus 48 ~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~ 127 (235)
T 3llm_A 48 HDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAE 127 (235)
T ss_dssp HHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHH
Confidence 3444444444444689999999999999999999999999999999999988765432 3489999999999999988
Q ss_pred HHHHhHhhCCCCccEEEEcCCCcHHHHHHHhcCCcEEEeChhHHHHhhcCCCchhHHHhhhhhhhhhhcchhhhhhhhcc
Q 002135 319 ALLAMTKAFDASIDIGVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLF 398 (961)
Q Consensus 319 ~l~~l~~~~~~~i~v~~~~Gd~~~~~r~~l~~~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~ 398 (961)
++...... ..+..++.-.. .+......+++|+|+||++|.+.+. ..+.++
T Consensus 128 ~~~~~~~~-~~~~~~g~~~~----~~~~~~~~~~~Ivv~Tpg~l~~~l~-------~~l~~~------------------ 177 (235)
T 3llm_A 128 RVAFERGE-EPGKSCGYSVR----FESILPRPHASIMFCTVGVLLRKLE-------AGIRGI------------------ 177 (235)
T ss_dssp HHHHTTTC-CTTSSEEEEET----TEEECCCSSSEEEEEEHHHHHHHHH-------HCCTTC------------------
T ss_pred HHHHHhcc-ccCceEEEeec----hhhccCCCCCeEEEECHHHHHHHHH-------hhhcCC------------------
Confidence 88765431 11223332111 1111112458899999999987652 125555
Q ss_pred eeEEEEecchhhhcccchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCChHHHHHHH
Q 002135 399 IRFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREHCMEL 456 (961)
Q Consensus 399 i~~VVIDEaH~~~~~fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~~e~~~~L 456 (961)
++|||||||.+ +......+..++.+... .++.|+|++|||+++.. +.+++
T Consensus 178 -~~lVlDEah~~----~~~~~~~~~~l~~i~~~--~~~~~~il~SAT~~~~~-~~~~~ 227 (235)
T 3llm_A 178 -SHVIVDEIHER----DINTDFLLVVLRDVVQA--YPEVRIVLMSATIDTSM-FCEYF 227 (235)
T ss_dssp -CEEEECCTTSC----CHHHHHHHHHHHHHHHH--CTTSEEEEEECSSCCHH-HHHHT
T ss_pred -cEEEEECCccC----CcchHHHHHHHHHHHhh--CCCCeEEEEecCCCHHH-HHHHc
Confidence 99999999984 12222233333433332 24679999999998754 44444
No 90
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.76 E-value=1.7e-16 Score=189.64 Aligned_cols=79 Identities=23% Similarity=0.169 Sum_probs=65.6
Q ss_pred CCCCCcHHHHHHHHH----HhCCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHHHHHHHHHHHHHhHhhC
Q 002135 252 GISKLYSHQAESIMA----SLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAF 327 (961)
Q Consensus 252 g~~~l~~~Q~~ai~~----il~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~PtraLa~qq~~~l~~l~~~~ 327 (961)
|| ++||+|.+++.+ +..|+++++.||||+|||++|++|++. .+.+++|++||++|+.|..+.+..+....
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~-----~~~~v~i~~pt~~l~~q~~~~~~~l~~~~ 74 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE-----VKPKVLFVVRTHNEFYPIYRDLTKIREKR 74 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH-----HCSEEEEEESSGGGHHHHHHHHTTCCCSS
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh-----CCCeEEEEcCCHHHHHHHHHHHHHHhhhc
Confidence 45 699999998875 457999999999999999999999998 26799999999999999998888775543
Q ss_pred CCCccEEEEcC
Q 002135 328 DASIDIGVYDG 338 (961)
Q Consensus 328 ~~~i~v~~~~G 338 (961)
++++.+..|
T Consensus 75 --~~~~~~l~g 83 (551)
T 3crv_A 75 --NITFSFLVG 83 (551)
T ss_dssp --CCCEEECCC
T ss_pred --CccEEEEcc
Confidence 355555555
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.67 E-value=4.2e-16 Score=165.97 Aligned_cols=139 Identities=20% Similarity=0.228 Sum_probs=106.0
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHHHHHHHHHHHHHhHhhCCCCcc-E
Q 002135 255 KLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASID-I 333 (961)
Q Consensus 255 ~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~PtraLa~qq~~~l~~l~~~~~~~i~-v 333 (961)
.|+++|.++++.+++++++++++|||+|||++++.++... +.+++|++|+++|+.|+.+++.++ ++. +
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----~~~~liv~P~~~L~~q~~~~~~~~------~~~~v 161 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----STPTLIVVPTLALAEQWKERLGIF------GEEYV 161 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS-----CSCEEEEESSHHHHHHHHHHHGGG------CGGGE
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc-----CCCEEEEeCCHHHHHHHHHHHHhC------CCCeE
Confidence 7999999999999999999999999999999998887653 568999999999999999998773 256 8
Q ss_pred EEEcCCCcHHHHHHHhcCCcEEEeChhHHHHhhcCCCchhHHHhhhhhhhhhhcchhhhhhhhcceeEEEEecchhhhcc
Q 002135 334 GVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGA 413 (961)
Q Consensus 334 ~~~~Gd~~~~~r~~l~~~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~i~~VVIDEaH~~~~~ 413 (961)
..++|+.. ...+|+|+||+++.... .....++ ++|||||+|++...
T Consensus 162 ~~~~g~~~--------~~~~i~v~T~~~l~~~~-------~~~~~~~-------------------~llIiDEaH~l~~~ 207 (237)
T 2fz4_A 162 GEFSGRIK--------ELKPLTVSTYDSAYVNA-------EKLGNRF-------------------MLLIFDEVHHLPAE 207 (237)
T ss_dssp EEESSSCB--------CCCSEEEEEHHHHHHTH-------HHHTTTC-------------------SEEEEECSSCCCTT
T ss_pred EEEeCCCC--------CcCCEEEEeHHHHHhhH-------HHhcccC-------------------CEEEEECCccCCCh
Confidence 88888764 25799999999886432 1112223 99999999998652
Q ss_pred cchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCChH
Q 002135 414 FGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPR 450 (961)
Q Consensus 414 fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~~ 450 (961)
.+ +++.... ...++|++|||+.+.+
T Consensus 208 ---~~----~~i~~~~-----~~~~~l~LSATp~r~D 232 (237)
T 2fz4_A 208 ---SY----VQIAQMS-----IAPFRLGLTATFERED 232 (237)
T ss_dssp ---TH----HHHHHTC-----CCSEEEEEEESCC---
T ss_pred ---HH----HHHHHhc-----cCCEEEEEecCCCCCC
Confidence 22 2222221 3568899999997543
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.63 E-value=2.8e-14 Score=172.26 Aligned_cols=72 Identities=19% Similarity=0.205 Sum_probs=61.9
Q ss_pred CCcHHHHHHHHH----HhCCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHHHHHHHHHHHHHhHhhC
Q 002135 255 KLYSHQAESIMA----SLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAF 327 (961)
Q Consensus 255 ~l~~~Q~~ai~~----il~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~PtraLa~qq~~~l~~l~~~~ 327 (961)
+|++.|.+++.. +.+|+++++.||||+|||++|++|++..+.. .+.+++|++||++|+.|..+.+..+....
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~-~~~kvli~t~T~~l~~Qi~~el~~l~~~~ 78 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE-RKLKVLYLVRTNSQEEQVIKELRSLSSTM 78 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH-HTCEEEEEESSHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh-cCCeEEEECCCHHHHHHHHHHHHHHhhcc
Confidence 589999999864 4589999999999999999999999998765 35799999999999999999998886643
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.58 E-value=6.3e-15 Score=159.92 Aligned_cols=134 Identities=14% Similarity=0.105 Sum_probs=99.6
Q ss_pred CCcHHHHHHHHHHHHHCCCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCC-Cce-
Q 002135 508 SSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGG-KLC- 585 (961)
Q Consensus 508 ~~~~~~~~~ll~~l~~~g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G-~~~- 585 (961)
..+...+..++..+...+.++||||+++..++.+...|...+ +..+..+||++++.+|.++++.|++| ..+
T Consensus 95 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~-------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v 167 (271)
T 1z5z_A 95 SGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKEL-------NTEVPFLYGELSKKERDDIISKFQNNPSVKF 167 (271)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHH-------CSCCCEECTTSCHHHHHHHHHHHHHCTTCCE
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhc-------CCcEEEEECCCCHHHHHHHHHHhcCCCCCCE
Confidence 456677788888887788999999999999999988886521 34577899999999999999999998 777
Q ss_pred EEEeccccccccccCCccEEEEeCCCCCHhhHHHHhccCCCCCCCceE--EEEeeCCcchhHHHh
Q 002135 586 GVAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERPSLA--VYVAFEGPLDQYFMK 648 (961)
Q Consensus 586 vLVAT~aLe~GIDIp~vd~VI~~~~P~s~~sy~QR~GRAGR~g~~g~~--i~l~~~~~~d~~~~~ 648 (961)
+|+||+++++|+|++.+++||++|+|++++.|.||+||++|.|+.+.+ +.++..+..|..+.+
T Consensus 168 ~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~ 232 (271)
T 1z5z_A 168 IVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQ 232 (271)
T ss_dssp EEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHH
T ss_pred EEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHHHHHH
Confidence 789999999999999999999999999999999999999999987654 445555555554443
No 94
>2zxx_C DNA replication factor CDT1; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=99.12 E-value=8.1e-11 Score=120.35 Aligned_cols=73 Identities=18% Similarity=0.306 Sum_probs=68.7
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHhhccceechhhhHHHHHHhhhcCCccchhhhhhhhhhcCCceEEeecC
Q 002135 8 NSSCLCPVWLKKIVEAFAFVSIFSAHLQLRREKVILSHVKGALNQLEKFGVRVGIEDIENLAVLCPKVVQFANDD 82 (961)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (961)
.++=+||..|+.|.++|++||++++||+.|||.+||++||++||.+ .||.++++++|+|+.|+|+++.|+|..
T Consensus 23 ~~~l~LP~ky~~L~~~F~~ld~v~~~l~~R~~~~tf~~lk~~Ve~~--~~r~f~~~~LaqI~~l~P~a~~~~~~~ 95 (197)
T 2zxx_C 23 LPGLVLPYKYQVLVEMFRSMDTIVSMLHNRSETVTFAKVKQGVQEM--MRKRFEERNVGQIKTVYPTSYRFRQEC 95 (197)
T ss_dssp SCSCCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCBHHHHHHHHHHH--HSSCCCHHHHHHHHHHCGGGEEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHH--HcCCCCHHHHHHHHHhccCeeEEEEEe
Confidence 3466899999999999999999999999999998999999999987 489999999999999999999999975
No 95
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.12 E-value=4.8e-06 Score=100.29 Aligned_cols=86 Identities=15% Similarity=0.107 Sum_probs=66.8
Q ss_pred HHHHHHHhC-CCCCCcHHHHHHHHHHhCCCcEEEEecCCchhH--HHHHHHHHHHHhcCCCCeEEEEcccHHHHHHHHHH
Q 002135 243 NTKSALKST-GISKLYSHQAESIMASLAGKNVVVATMTSSGKS--LCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRA 319 (961)
Q Consensus 243 ~l~~~L~~~-g~~~l~~~Q~~ai~~il~G~~vIv~apTGSGKT--la~~Lpil~~l~~~~~~~aLvl~PtraLa~qq~~~ 319 (961)
.+...|... +-..-.+.|.+|++.++.++.+++++++|+||| ++++++++..+....+.++++++||..+|.+..+.
T Consensus 136 ~~~~~l~~~~~~~~~~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~ 215 (608)
T 1w36_D 136 LLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTES 215 (608)
T ss_dssp HHHHHHHTTCCCTTSCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHH
Confidence 344455442 112237899999999999999999999999999 77888888776444567899999999999998888
Q ss_pred HHHhHhhCC
Q 002135 320 LLAMTKAFD 328 (961)
Q Consensus 320 l~~l~~~~~ 328 (961)
+......++
T Consensus 216 ~~~~~~~l~ 224 (608)
T 1w36_D 216 LGKALRQLP 224 (608)
T ss_dssp HTHHHHHSS
T ss_pred HHHHHhcCC
Confidence 877666553
No 96
>1wlq_C CDT1 protein; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_C*
Probab=97.78 E-value=3.6e-05 Score=77.23 Aligned_cols=72 Identities=18% Similarity=0.316 Sum_probs=67.6
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHhhccceechhhhHHHHHHhhhcCCccchhhhhhhhhhcCCceEEeecC
Q 002135 9 SSCLCPVWLKKIVEAFAFVSIFSAHLQLRREKVILSHVKGALNQLEKFGVRVGIEDIENLAVLCPKVVQFANDD 82 (961)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (961)
++=.-|..++.|.++|++|-++...|..|+..+||++||.+||.+ .+|..+...+|||+.|.|.++.|++..
T Consensus 28 ~~l~LP~kY~~L~e~F~~ldtv~~ml~~R~~~~Tf~~ik~~VE~~--trr~F~~~hLaQIk~IyPeay~l~~~k 99 (201)
T 1wlq_C 28 PGLVLPYKYQVLVEMFHSMDTIVSMLHNRSETVTFAKVKQGVQEM--MRKRFEERNVGQIKTVYPMSYRFRQEC 99 (201)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCBHHHHHHHHHHH--HTSCCCHHHHHHHHHHCTTSEEEEEEE
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHH--hcCCcCHHHHHHHHHhccCceEEEeee
Confidence 345689999999999999999999999999999999999999987 499999999999999999999999884
No 97
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.48 E-value=0.00055 Score=82.59 Aligned_cols=70 Identities=11% Similarity=0.156 Sum_probs=57.0
Q ss_pred CCCCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHHHHHHHHHHHHHh
Q 002135 253 ISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAM 323 (961)
Q Consensus 253 ~~~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~PtraLa~qq~~~l~~l 323 (961)
...+.+.|.+|+..++.+..++|.+|+|+|||.+.. -++..+....+.++|+++||...+.+..+++.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~-~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHH-HHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHH-HHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 346899999999999988889999999999998753 3444444445779999999999999988887653
No 98
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.30 E-value=0.00095 Score=82.60 Aligned_cols=70 Identities=16% Similarity=0.178 Sum_probs=56.5
Q ss_pred CCCCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHHHHHHHHHHHHHh
Q 002135 253 ISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAM 323 (961)
Q Consensus 253 ~~~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~PtraLa~qq~~~l~~l 323 (961)
+..+.+.|.+|+..++.+..++|.+|.|||||.+..- ++..+...++.++|+++||...+.+..+++.+.
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~-~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSAT-IVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHH-HHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHH-HHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 3468899999999999888899999999999976543 333333324678999999999999999988764
No 99
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.23 E-value=0.0011 Score=81.87 Aligned_cols=70 Identities=11% Similarity=0.156 Sum_probs=56.9
Q ss_pred CCCCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHHHHHHHHHHHHHh
Q 002135 253 ISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAM 323 (961)
Q Consensus 253 ~~~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~PtraLa~qq~~~l~~l 323 (961)
...+.+.|.+|+..++.+..++|.+|.|+|||.+.. -++..+....+.++|+++||...+.+..+++.+.
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~-~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHH-HHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHH-HHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 346899999999999988889999999999998643 3445555445779999999999999888887653
No 100
>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A*
Probab=97.16 E-value=0.00049 Score=79.47 Aligned_cols=71 Identities=14% Similarity=0.273 Sum_probs=65.2
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHhhccceechhhhHHHHHHhhhcCCccchhhhhhhhhhcCCceEEeecCc
Q 002135 11 CLCPVWLKKIVEAFAFVSIFSAHLQLRREKVILSHVKGALNQLEKFGVRVGIEDIENLAVLCPKVVQFANDDM 83 (961)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (961)
=.-|..++.|.++|.+|.+++.||..|++.+||.+|+..||.+ .++.++..++++|+.|.|....|++.-.
T Consensus 184 l~LP~ky~~L~elF~alDtvlslL~~R~~~~tf~kI~~~Ve~m--tkrrFt~~hLaQI~~I~PeaY~l~~~k~ 254 (546)
T 2wvr_C 184 LVLPYKYQVLAEMFRSMDTIVGMLHNRSETPTFAKVQRGVQDM--MRRRFEERNVGQIKTVYPASYRFRQERS 254 (546)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCBHHHHHHHHHHH--HSSCCCHHHHHHHHHHCGGGEEEEEC--
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHH--HcCCccHHHHHHHHHhccchhhhhhhhc
Confidence 4589999999999999999999999999999999999999988 4899999999999999999999986533
No 101
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.09 E-value=0.0011 Score=76.96 Aligned_cols=71 Identities=15% Similarity=0.124 Sum_probs=51.7
Q ss_pred HhCCCCCCcHHHHHHHHHHhC----CC-cEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHHHHHHHHHHH
Q 002135 249 KSTGISKLYSHQAESIMASLA----GK-NVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL 320 (961)
Q Consensus 249 ~~~g~~~l~~~Q~~ai~~il~----G~-~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~PtraLa~qq~~~l 320 (961)
.-+.+..|++-|.+|+..++. ++ .++|.|+.|||||.+. ..++..+.......+++++||...+....+.+
T Consensus 19 ~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 19 SHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTGETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTTCCCEEEEESSHHHHHHHHHHH
T ss_pred CCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcCCceEEEecCcHHHHHHHHhhh
Confidence 335788999999999997653 23 8999999999999654 34455555443347999999998877655443
No 102
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.98 E-value=0.0046 Score=69.63 Aligned_cols=74 Identities=8% Similarity=0.048 Sum_probs=61.3
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHHHHHHHHHHHHHhHhhCC
Q 002135 255 KLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFD 328 (961)
Q Consensus 255 ~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~PtraLa~qq~~~l~~l~~~~~ 328 (961)
.|+|+|...+..+...+-+++..+-+.|||.+...-++..+...++..+++++|++.-|...++.+..+....+
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P 236 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhCh
Confidence 68999999998875556789999999999988776666555556677899999999999999988888876554
No 103
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.95 E-value=0.0013 Score=78.42 Aligned_cols=62 Identities=21% Similarity=0.094 Sum_probs=49.3
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHHHHHHHHH
Q 002135 255 KLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLR 318 (961)
Q Consensus 255 ~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~PtraLa~qq~~ 318 (961)
.+++.|.+|+..++.++.++++++.|+|||... ..++..+.. .+.++++++||...+....+
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~-~g~~Vl~~ApT~~Aa~~L~e 250 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAES-LGLEVGLCAPTGKAARRLGE 250 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHH-TTCCEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHh-cCCeEEEecCcHHHHHHhHh
Confidence 689999999999999999999999999999753 223333333 46789999999988875544
No 104
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.66 E-value=0.013 Score=70.06 Aligned_cols=74 Identities=8% Similarity=0.048 Sum_probs=61.7
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHHHHHHHHHHHHHhHhhCC
Q 002135 255 KLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFD 328 (961)
Q Consensus 255 ~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~PtraLa~qq~~~l~~l~~~~~ 328 (961)
.|+|+|...+..+...+.+++..+-++|||.+...-++..+...++..++++.|++..|.+..+.++.+....+
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i~~~p 236 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHTTSC
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHHHhCh
Confidence 68999999998875567899999999999988766555555666677999999999999999988888876554
No 105
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.36 E-value=0.0048 Score=74.55 Aligned_cols=83 Identities=17% Similarity=0.175 Sum_probs=63.1
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcC--CCCeEEEEcccHHHHHHHHHHHHHhHhhCCCCc
Q 002135 254 SKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHD--LSSSALYMFPTKALAQDQLRALLAMTKAFDASI 331 (961)
Q Consensus 254 ~~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~--~~~~aLvl~PtraLa~qq~~~l~~l~~~~~~~i 331 (961)
..|++-|.+|+. ..+..++|.|+.|||||.+..--+...+.+. +..++|++++|+..+.+..+++.++.......+
T Consensus 8 ~~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~~~~~~ 85 (647)
T 3lfu_A 8 DSLNDKQREAVA--APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTSQGGM 85 (647)
T ss_dssp TTCCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCSCCTTC
T ss_pred hcCCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhccccCCc
Confidence 468999999997 3467899999999999988665555555442 245899999999999999999988754322345
Q ss_pred cEEEEcC
Q 002135 332 DIGVYDG 338 (961)
Q Consensus 332 ~v~~~~G 338 (961)
.+.++++
T Consensus 86 ~v~Tfhs 92 (647)
T 3lfu_A 86 WVGTFHG 92 (647)
T ss_dssp EEEEHHH
T ss_pred EEEcHHH
Confidence 5666654
No 106
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=96.21 E-value=0.056 Score=58.97 Aligned_cols=148 Identities=14% Similarity=0.031 Sum_probs=97.8
Q ss_pred CCCcHHHHHHHHHHHHHCCCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceE
Q 002135 507 TSSPISEVSYLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCG 586 (961)
Q Consensus 507 ~~~~~~~~~~ll~~l~~~g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~v 586 (961)
.+.+..-+.+++..+.+.|.+++||++..+..+.+-.++.. .+.....+.|..... +++ -.+....+
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~--------~~~~y~RlDG~~~~~-~~k----~~~~~~~i 173 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLG--------NKVHIKRYDGHSIKS-AAA----ANDFSCTV 173 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTT--------SSCEEEESSSCCC------------CCSEEE
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhc--------CCCceEeCCCCchhh-hhh----cccCCceE
Confidence 56677778888888888899999999999988877666543 234556667764332 221 13556666
Q ss_pred EEeccccccccc-----cCCccEEEEeCCCCCHhh-HHHHhccCCCCC----CCceEEEEeeCCcchhHHHhchHHhhcC
Q 002135 587 VAATNALELGID-----VGHIDVTLHLGFPGSIAS-LWQQAGRSGRRE----RPSLAVYVAFEGPLDQYFMKYPEKLFKS 656 (961)
Q Consensus 587 LVAT~aLe~GID-----Ip~vd~VI~~~~P~s~~s-y~QR~GRAGR~g----~~g~~i~l~~~~~~d~~~~~~~e~l~~~ 656 (961)
.+.|.+...|++ ....|.||.||.-++..+ .+|.+-|+.|.| ++-.++-++..+..+......+.. +
T Consensus 174 ~Lltsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~~~~-~-- 250 (328)
T 3hgt_A 174 HLFSSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFFGKK-F-- 250 (328)
T ss_dssp EEEESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHHHHHH-T--
T ss_pred EEEECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHccCC-C--
Confidence 666887777886 577899999999998887 488888877762 345667777777777666655544 1
Q ss_pred CCcccccCCCCHHHHHHHHHH
Q 002135 657 PIECCHIDAQNHKVLEQHLVC 677 (961)
Q Consensus 657 ~ie~~~~~~~n~~vl~~~l~~ 677 (961)
+.....-+.+.+.+
T Consensus 251 -------~~~~~~~l~k~i~a 264 (328)
T 3hgt_A 251 -------DKNSREYLENVTAA 264 (328)
T ss_dssp -------CTTCHHHHHHHHHH
T ss_pred -------CcchHHHHHHHHHH
Confidence 22334556666655
No 107
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.89 E-value=0.014 Score=70.58 Aligned_cols=67 Identities=18% Similarity=0.214 Sum_probs=54.0
Q ss_pred CCcHHHHHHHHHHhCCC-cEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHHHHHHHHHHHHHh
Q 002135 255 KLYSHQAESIMASLAGK-NVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAM 323 (961)
Q Consensus 255 ~l~~~Q~~ai~~il~G~-~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~PtraLa~qq~~~l~~l 323 (961)
.|.+-|.+|+..++..+ -.||.+|.|+|||.+..--+.+.+. .+.++|+++||..-+.+..+++...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~--~~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVK--QGLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEcCchHHHHHHHHHHHhc
Confidence 68999999999988765 5789999999999875544444443 3678999999999999998888654
No 108
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=95.74 E-value=0.014 Score=71.45 Aligned_cols=83 Identities=12% Similarity=0.143 Sum_probs=63.2
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcC--CCCeEEEEcccHHHHHHHHHHHHHhHhhCCCCc
Q 002135 254 SKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHD--LSSSALYMFPTKALAQDQLRALLAMTKAFDASI 331 (961)
Q Consensus 254 ~~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~--~~~~aLvl~PtraLa~qq~~~l~~l~~~~~~~i 331 (961)
..|++-|.+|+.. .+.+++|.|+.|||||.+..--+...+.+. +..++|+|+.|+..|.+..+++.++.......+
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~~~~~ 87 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGAAEDV 87 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGGGGTTS
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhcccccCc
Confidence 4689999999975 457899999999999988665555555432 345799999999999999999988754322345
Q ss_pred cEEEEcC
Q 002135 332 DIGVYDG 338 (961)
Q Consensus 332 ~v~~~~G 338 (961)
.++++++
T Consensus 88 ~v~Tfhs 94 (724)
T 1pjr_A 88 WISTFHS 94 (724)
T ss_dssp EEEEHHH
T ss_pred EEeeHHH
Confidence 6776665
No 109
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=95.31 E-value=0.014 Score=70.85 Aligned_cols=83 Identities=11% Similarity=0.044 Sum_probs=62.8
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhc-C-CCCeEEEEcccHHHHHHHHHHHHHhHhhCC-CCc
Q 002135 255 KLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSH-D-LSSSALYMFPTKALAQDQLRALLAMTKAFD-ASI 331 (961)
Q Consensus 255 ~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~-~-~~~~aLvl~PtraLa~qq~~~l~~l~~~~~-~~i 331 (961)
.|++-|.+|+.. .+.+++|.|+.|||||.+..--+...+.+ . +..++|+|+.|+..|.+..+++.+...... ..+
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~~~~~ 79 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKEARGL 79 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTTTTTTS
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCcccccCC
Confidence 588999999975 46789999999999998866555555543 1 346899999999999999999987654321 236
Q ss_pred cEEEEcCC
Q 002135 332 DIGVYDGD 339 (961)
Q Consensus 332 ~v~~~~Gd 339 (961)
.+.++++-
T Consensus 80 ~v~Tfhs~ 87 (673)
T 1uaa_A 80 MISTFHTL 87 (673)
T ss_dssp EEEEHHHH
T ss_pred EEEeHHHH
Confidence 67776653
No 110
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.58 E-value=0.071 Score=51.57 Aligned_cols=19 Identities=26% Similarity=0.228 Sum_probs=16.8
Q ss_pred CCCcEEEEecCCchhHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCY 287 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~ 287 (961)
.|+.+++.+|+|+|||...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 6889999999999999754
No 111
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.35 E-value=0.31 Score=48.11 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=23.9
Q ss_pred cHHHHHHHHHHh---------CCCcEEEEecCCchhHHHHH
Q 002135 257 YSHQAESIMASL---------AGKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 257 ~~~Q~~ai~~il---------~G~~vIv~apTGSGKTla~~ 288 (961)
.+.|.+++..+. .|+.+++.+|+|+|||....
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 345666666543 47899999999999997654
No 112
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=94.12 E-value=0.063 Score=69.75 Aligned_cols=68 Identities=18% Similarity=0.214 Sum_probs=56.9
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHHHHHHHHHhcC----CCCeEEEEcccHHHHHHHHHHHHHhH
Q 002135 255 KLYSHQAESIMASLAGKNVVVATMTSSGKSLCYNLPVLEALSHD----LSSSALYMFPTKALAQDQLRALLAMT 324 (961)
Q Consensus 255 ~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~Lpil~~l~~~----~~~~aLvl~PtraLa~qq~~~l~~l~ 324 (961)
++++-|.++|.. .+++++|.|+.|||||.+..--++..+... ...++|++++|++.|....+++....
T Consensus 10 ~~t~eQ~~~i~~--~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l 81 (1232)
T 3u4q_A 10 TWTDDQWNAIVS--TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEAL 81 (1232)
T ss_dssp CCCHHHHHHHHC--CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHH
Confidence 689999999975 388999999999999998777777776653 23579999999999999999987743
No 113
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.71 E-value=0.74 Score=52.74 Aligned_cols=144 Identities=17% Similarity=0.123 Sum_probs=73.8
Q ss_pred CCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHHHHHHHHHHHHHhHhhCCC-CccEEEEcCCCcHHHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDA-SIDIGVYDGDTTQKDRMW 347 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~PtraLa~qq~~~l~~l~~~~~~-~i~v~~~~Gd~~~~~r~~ 347 (961)
.|.-+++.|++|+|||.-.+--+..... ..+..++|++.-- =..|...++......+.. .+ ..|.....+...
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~-~~g~~vl~~slE~-~~~~l~~R~~~~~~~i~~~~l----~~g~l~~~~~~~ 272 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAAL-KEGVGVGIYSLEM-PAAQLTLRMMCSEARIDMNRV----RLGQLTDRDFSR 272 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH-TTCCCEEEEESSS-CHHHHHHHHHHHHTTCCTTTC----CGGGCCHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCeEEEEECCC-CHHHHHHHHHHHHcCCCHHHH----hCCCCCHHHHHH
Confidence 4567899999999999655444444333 2355677776421 123344444332222211 11 134333333222
Q ss_pred Hh------cCCcEEEe-Ch----hHHHHhhcCCCchhHHHhhhhhhhhhhcchhhhhhhhcceeEEEEecchhhhcc---
Q 002135 348 LR------DNARLLIT-NP----DMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGA--- 413 (961)
Q Consensus 348 l~------~~~~IlIt-TP----e~L~~~lL~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~i~~VVIDEaH~~~~~--- 413 (961)
+. ....+.+- +| +.+... .+..... .++++||||..+.+...
T Consensus 273 ~~~a~~~l~~~~l~i~d~~~~s~~~l~~~-------~~~l~~~-----------------~~~~lIvID~l~~~~~~~~~ 328 (444)
T 2q6t_A 273 LVDVASRLSEAPIYIDDTPDLTLMEVRAR-------ARRLVSQ-----------------NQVGLIIIDYLQLMSGPGSG 328 (444)
T ss_dssp HHHHHHHHHTSCEEEECCTTCBHHHHHHH-------HHHHHHH-----------------SCCCEEEEECGGGCBCC---
T ss_pred HHHHHHHHhcCCEEEECCCCCCHHHHHHH-------HHHHHHH-----------------cCCCEEEEcChhhcCCCcCC
Confidence 11 12345543 22 222111 1111111 12499999999998642
Q ss_pred -----cchHHHHHHHHHHHHhhcccCCCCcEEEeccC
Q 002135 414 -----FGCHTALILRRLCRLCSHVYGSDPSFVFSTAT 445 (961)
Q Consensus 414 -----fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSAT 445 (961)
....+..+++.|+.++... +..+|++|-.
T Consensus 329 ~~~~~r~~~i~~i~~~Lk~lAke~---~v~vi~lsql 362 (444)
T 2q6t_A 329 KSGENRQQEIAAISRGLKALAREL---GIPIIALSQL 362 (444)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHH---TSCEEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHh---CCeEEEEecC
Confidence 1234667888888887653 4567776643
No 114
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=93.47 E-value=0.27 Score=60.46 Aligned_cols=87 Identities=10% Similarity=0.143 Sum_probs=71.8
Q ss_pred HHHHCCCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEeccc-cccccc
Q 002135 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNA-LELGID 598 (961)
Q Consensus 520 ~l~~~g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~a-Le~GID 598 (961)
.....|.++++.++++.-|+..++.+++.+.. .+..+..+||+.+..+|+.+.+.+.+|+.+|+|+|.. +...++
T Consensus 412 ~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~----~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~ 487 (780)
T 1gm5_A 412 DNYEAGFQTAFMVPTSILAIQHYRRTVESFSK----FNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVH 487 (780)
T ss_dssp HHHHHTSCEEEECSCHHHHHHHHHHHHHHHTC----SSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCC
T ss_pred HHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhh----cCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhh
Confidence 33456789999999999999998888775532 3457899999999999999999999999999999984 455678
Q ss_pred cCCccEEEEeCC
Q 002135 599 VGHIDVTLHLGF 610 (961)
Q Consensus 599 Ip~vd~VI~~~~ 610 (961)
+.++++||.-..
T Consensus 488 ~~~l~lVVIDEa 499 (780)
T 1gm5_A 488 FKNLGLVIIDEQ 499 (780)
T ss_dssp CSCCCEEEEESC
T ss_pred ccCCceEEeccc
Confidence 889999885544
No 115
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.85 E-value=0.11 Score=52.13 Aligned_cols=40 Identities=20% Similarity=-0.011 Sum_probs=27.6
Q ss_pred CCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccH
Q 002135 269 AGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTK 310 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~Ptr 310 (961)
.|+-.++++|.|+|||...+--+..... .+.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~--~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKL--GKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH--TTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeecc
Confidence 4666889999999999876433333322 256788888874
No 116
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=92.75 E-value=0.31 Score=53.55 Aligned_cols=37 Identities=11% Similarity=0.176 Sum_probs=27.4
Q ss_pred CcHHHHHHHHHHh----CCC---cEEEEecCCchhHHHHHHHHH
Q 002135 256 LYSHQAESIMASL----AGK---NVVVATMTSSGKSLCYNLPVL 292 (961)
Q Consensus 256 l~~~Q~~ai~~il----~G~---~vIv~apTGSGKTla~~Lpil 292 (961)
++|+|.+++..+. +|+ .+++.+|.|+|||..+..-+-
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~ 46 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSR 46 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHH
Confidence 5788888876654 443 389999999999987654443
No 117
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=92.17 E-value=1.1 Score=48.98 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=28.5
Q ss_pred eEEEEecchhhhcccchHHHHHHHHHHHHhhcccCCCCcEEEeccCCCChHHH
Q 002135 400 RFVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATSANPREH 452 (961)
Q Consensus 400 ~~VVIDEaH~~~~~fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl~n~~e~ 452 (961)
-+|++||+|.+. +..+ |..+-++.. ....+.-+|+.++|+.+|...
T Consensus 134 ~ii~lDE~d~l~---~q~~---L~~l~~~~~-~~~s~~~vI~i~n~~d~~~~~ 179 (318)
T 3te6_A 134 TLILIQNPENLL---SEKI---LQYFEKWIS-SKNSKLSIICVGGHNVTIREQ 179 (318)
T ss_dssp EEEEEECCSSSC---CTHH---HHHHHHHHH-CSSCCEEEEEECCSSCCCHHH
T ss_pred eEEEEecHHHhh---cchH---HHHHHhccc-ccCCcEEEEEEecCcccchhh
Confidence 689999999987 2222 222222221 123456788999999887643
No 118
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.06 E-value=0.62 Score=47.59 Aligned_cols=20 Identities=10% Similarity=0.090 Sum_probs=16.8
Q ss_pred CCCcEEEEecCCchhHHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~ 288 (961)
.++++++.+|+|+|||....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 46789999999999997643
No 119
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=91.96 E-value=0.69 Score=52.96 Aligned_cols=39 Identities=8% Similarity=0.008 Sum_probs=24.7
Q ss_pred CCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcc
Q 002135 270 GKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFP 308 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~P 308 (961)
+.++++.+|+|+|||..+..-+-......++..++++..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~ 168 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 358999999999999866443322222233555666543
No 120
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.81 E-value=0.83 Score=47.06 Aligned_cols=38 Identities=13% Similarity=0.250 Sum_probs=26.0
Q ss_pred CCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcc
Q 002135 269 AGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFP 308 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~P 308 (961)
.|.-+++.+|+|+|||....--+..... .+..++|+.-
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~--~~~~v~~~~~ 59 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK--MGEPGIYVAL 59 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHH--TTCCEEEEES
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEEc
Confidence 5678999999999999865443333332 2556777764
No 121
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=91.58 E-value=0.91 Score=49.31 Aligned_cols=36 Identities=8% Similarity=0.073 Sum_probs=23.1
Q ss_pred CCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEc
Q 002135 270 GKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMF 307 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~ 307 (961)
+..+++.+|+|+|||.....- ...+... +..++++.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i-~~~~~~~-~~~~~~i~ 72 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAA-GNEAKKR-GYRVIYSS 72 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHH-HHHHHHT-TCCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHH-HHHHHHC-CCEEEEEE
Confidence 468999999999999865432 2333222 44556554
No 122
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.50 E-value=1.5 Score=50.25 Aligned_cols=43 Identities=19% Similarity=0.236 Sum_probs=30.3
Q ss_pred eeEEEEecchhhhcc------cchHHHHHHHHHHHHhhcccCCCCcEEEecc
Q 002135 399 IRFVVIDEAHAYKGA------FGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444 (961)
Q Consensus 399 i~~VVIDEaH~~~~~------fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSA 444 (961)
+++||||+.+.+... ....+..+++.|+.++... +..+|++|-
T Consensus 314 ~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~---~i~vi~~sq 362 (454)
T 2r6a_A 314 LGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALAREL---EVPVIALSQ 362 (454)
T ss_dssp CCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHH---TCCEEEEEC
T ss_pred CCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHh---CCeEEEEec
Confidence 499999999998742 2345677888888877542 456676654
No 123
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=91.40 E-value=1.2 Score=45.34 Aligned_cols=45 Identities=16% Similarity=-0.013 Sum_probs=27.0
Q ss_pred ee--EEEEecchhhhcccchHHHHHHHHHHHHhhcccCCCCcEEEeccCC
Q 002135 399 IR--FVVIDEAHAYKGAFGCHTALILRRLCRLCSHVYGSDPSFVFSTATS 446 (961)
Q Consensus 399 i~--~VVIDEaH~~~~~fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl 446 (961)
++ +||+||...+.+.-......+++.|++++.. ....+|+.|-..
T Consensus 122 ~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~---~~~~vi~~~h~~ 168 (235)
T 2w0m_A 122 YGKARLVIDSVSALFLDKPAMARKISYYLKRVLNK---WNFTIYATSQYA 168 (235)
T ss_dssp SSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHH---TTEEEEEEEC--
T ss_pred CCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHh---CCCeEEEEeccC
Confidence 37 9999999987632223456666777666543 134566655544
No 124
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=90.62 E-value=0.31 Score=53.77 Aligned_cols=149 Identities=17% Similarity=0.135 Sum_probs=77.0
Q ss_pred CCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHHHHHHHHHHHHHhHhhCCCCccEEEEcCCCcHHHHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWL 348 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~PtraLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~~~r~~l 348 (961)
.|.-+++.|++|+|||.-.+--+..... .+..++|++.- .=..|...++......+. .. .+..|.....+...+
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlE-ms~~ql~~Rlls~~~~v~--~~-~l~~g~Ls~~e~~~l 118 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLE-MSAEQLALRALSDLTSIN--MH-DLESGRLDDDQWENL 118 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESS-SCHHHHHHHHHHHHHCCC--HH-HHHHTCCCHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCC-CCHHHHHHHHHHHhhCCC--HH-HHhcCCCCHHHHHHH
Confidence 4567999999999999765444444333 35677877642 223344445433322211 10 011344433333222
Q ss_pred h------cCCcEEE-eChhHHHHhhcCCCchhHHHhhhhhhhhhhcchhhhhhhhcceeEEEEecchhhhcc-----cch
Q 002135 349 R------DNARLLI-TNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKGA-----FGC 416 (961)
Q Consensus 349 ~------~~~~IlI-tTPe~L~~~lL~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~i~~VVIDEaH~~~~~-----fg~ 416 (961)
. ....+.| -+|..=...+ ...+..+. .. ..++++||||-.+.+... ...
T Consensus 119 ~~a~~~l~~~~l~I~d~~~~si~~i-------~~~ir~l~--------~~----~gg~~lIVIDyLqlm~~~~~~~~r~~ 179 (338)
T 4a1f_A 119 AKCFDHLSQKKLFFYDKSYVRIEQI-------RLQLRKLK--------SQ----HKELGIAFIDYLQLMSGSKATKERHE 179 (338)
T ss_dssp HHHHHHHHHSCEEEECCTTCCHHHH-------HHHHHHHH--------HH----CTTEEEEEEEEEECCCTHHHHHHCCC
T ss_pred HHHHHHHhcCCeEEeCCCCCcHHHH-------HHHHHHHH--------Hh----cCCCCEEEEechHHhcCCCCCCChHH
Confidence 1 1234444 3443100001 11111110 00 002499999999988642 335
Q ss_pred HHHHHHHHHHHHhhcccCCCCcEEEeccC
Q 002135 417 HTALILRRLCRLCSHVYGSDPSFVFSTAT 445 (961)
Q Consensus 417 ~~~~ilrrL~~~~~~~~~~~~q~I~lSAT 445 (961)
.+..+.+.|+.++..+ +..+|++|-.
T Consensus 180 ei~~isr~LK~lAkel---~vpVi~lsQl 205 (338)
T 4a1f_A 180 QIAEISRELKTLAREL---EIPIIALVQL 205 (338)
T ss_dssp CHHHHHHHHHHHHHHH---TSCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHc---CCeEEEEEec
Confidence 6788889999888764 5677777654
No 125
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=90.37 E-value=2.8 Score=40.52 Aligned_cols=19 Identities=16% Similarity=0.170 Sum_probs=16.1
Q ss_pred CCcEEEEecCCchhHHHHH
Q 002135 270 GKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~~ 288 (961)
..++++.+|+|+|||....
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4689999999999997654
No 126
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=90.35 E-value=0.73 Score=49.52 Aligned_cols=19 Identities=11% Similarity=0.052 Sum_probs=16.1
Q ss_pred CCcEEEEecCCchhHHHHH
Q 002135 270 GKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~~ 288 (961)
+.++++.+|+|+|||..+.
T Consensus 67 ~~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3579999999999998654
No 127
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.19 E-value=0.94 Score=48.55 Aligned_cols=44 Identities=9% Similarity=0.057 Sum_probs=25.3
Q ss_pred eeEEEEecchhhhcc-----cchHHHHHHHHHHHHhhcccCCCCcEEEeccC
Q 002135 399 IRFVVIDEAHAYKGA-----FGCHTALILRRLCRLCSHVYGSDPSFVFSTAT 445 (961)
Q Consensus 399 i~~VVIDEaH~~~~~-----fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSAT 445 (961)
+++||+||...+... ....+..+++.|++++... ...+|++|-.
T Consensus 148 p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~---~~~vi~vsh~ 196 (296)
T 1cr0_A 148 CDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKST---GVVLVVICHL 196 (296)
T ss_dssp CSEEEEEEEC-----------CHHHHHHHHHHHHHHHHH---CCEEEEEEEC
T ss_pred CCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHh---CCeEEEEEec
Confidence 499999999986531 1245566777777776432 3456665544
No 128
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=89.84 E-value=0.99 Score=53.03 Aligned_cols=40 Identities=30% Similarity=0.303 Sum_probs=27.2
Q ss_pred CCcEEEEecCCchhHHHHHHHHHHHHhcC-CC-CeEEEEccc
Q 002135 270 GKNVVVATMTSSGKSLCYNLPVLEALSHD-LS-SSALYMFPT 309 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~~Lpil~~l~~~-~~-~~aLvl~Pt 309 (961)
..+++|.+.||||||.+...-++..+... +. .+.++|=|-
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpK 255 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPK 255 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCC
Confidence 46899999999999987666555555432 32 345555554
No 129
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=89.54 E-value=1.3 Score=44.74 Aligned_cols=35 Identities=20% Similarity=0.027 Sum_probs=24.2
Q ss_pred CCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcc
Q 002135 269 AGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFP 308 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~P 308 (961)
.|.-+++.+|+|+|||.....-+. . .+..++|+.-
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~---~--~~~~v~~i~~ 53 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL---L--SGKKVAYVDT 53 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH---H--HCSEEEEEES
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH---H--cCCcEEEEEC
Confidence 356789999999999976544333 1 2567777763
No 130
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=89.53 E-value=2.2 Score=46.97 Aligned_cols=20 Identities=20% Similarity=0.297 Sum_probs=16.6
Q ss_pred CCCcEEEEecCCchhHHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~ 288 (961)
.+.++++.+|+|+|||....
T Consensus 43 ~~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHH
Confidence 35689999999999998654
No 131
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=89.00 E-value=1.1 Score=44.65 Aligned_cols=17 Identities=12% Similarity=0.223 Sum_probs=14.8
Q ss_pred CcEEEEecCCchhHHHH
Q 002135 271 KNVVVATMTSSGKSLCY 287 (961)
Q Consensus 271 ~~vIv~apTGSGKTla~ 287 (961)
.++++.+|+|+|||...
T Consensus 39 ~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46999999999999754
No 132
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=88.98 E-value=3.6 Score=44.57 Aligned_cols=43 Identities=19% Similarity=0.201 Sum_probs=30.1
Q ss_pred e--EEEEecchhhhcc-----cchHHHHHHHHHHHHhhcccCCCCcEEEeccC
Q 002135 400 R--FVVIDEAHAYKGA-----FGCHTALILRRLCRLCSHVYGSDPSFVFSTAT 445 (961)
Q Consensus 400 ~--~VVIDEaH~~~~~-----fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSAT 445 (961)
+ +||||-++.+... ....+..+++.|+.++... +..+|++|-.
T Consensus 181 ~~~lVVID~l~~l~~~~~~~~r~~~i~~~~~~Lk~lAk~~---~i~vi~lsql 230 (315)
T 3bh0_A 181 KRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMAREL---DVVVIALSQL 230 (315)
T ss_dssp CCEEEEEECGGGSBCSCTTSCHHHHHHHHHHHHHHHHHHH---TCEEEEEECC
T ss_pred CCeEEEEeCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHh---CCeEEEEeec
Confidence 7 9999999988642 2245677888888887653 4566666543
No 133
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=88.98 E-value=0.58 Score=56.04 Aligned_cols=55 Identities=16% Similarity=0.146 Sum_probs=41.2
Q ss_pred CCcHHHHHHHHHHhC--CCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHHHHH
Q 002135 255 KLYSHQAESIMASLA--GKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQ 314 (961)
Q Consensus 255 ~l~~~Q~~ai~~il~--G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~PtraLa~ 314 (961)
.++..|.+|+..++. ....+++|+-|.|||.+.-+.+-. +. ..+++.+|+.+=++
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~-~~----~~~~vtAP~~~a~~ 231 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISR-IA----GRAIVTAPAKASTD 231 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHH-SS----SCEEEECSSCCSCH
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHH-HH----hCcEEECCCHHHHH
Confidence 689999999999876 345899999999999665544433 22 24688999987554
No 134
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=88.90 E-value=1.2 Score=49.26 Aligned_cols=19 Identities=16% Similarity=0.235 Sum_probs=15.9
Q ss_pred CCcEEEEecCCchhHHHHH
Q 002135 270 GKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~~ 288 (961)
++.+++.+|+|+|||....
T Consensus 45 ~~~vll~G~~G~GKT~la~ 63 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSK 63 (384)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 3579999999999998653
No 135
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=88.12 E-value=2.3 Score=46.21 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=16.1
Q ss_pred CCcEEEEecCCchhHHHHH
Q 002135 270 GKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~~ 288 (961)
.+++++.+|+|+|||..+.
T Consensus 51 ~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCEEEEECSSSSCHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 3579999999999998653
No 136
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=87.91 E-value=2.4 Score=46.83 Aligned_cols=35 Identities=11% Similarity=0.224 Sum_probs=22.0
Q ss_pred cEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEc
Q 002135 272 NVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMF 307 (961)
Q Consensus 272 ~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~ 307 (961)
.+++.+|+|+|||..... +...+....+..++++.
T Consensus 46 ~~li~G~~G~GKTtl~~~-l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRK-LWELYKDKTTARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHHHH-HHHHHTTSCCCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHH-HHHHHhhhcCeeEEEEe
Confidence 799999999999986533 33333221134556554
No 137
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=87.62 E-value=1.3 Score=45.35 Aligned_cols=39 Identities=23% Similarity=0.055 Sum_probs=26.8
Q ss_pred CCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccH
Q 002135 270 GKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTK 310 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~Ptr 310 (961)
|+=.+++++.|||||...+--+..... .+.+++++.|.+
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~--~g~kVli~k~~~ 66 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQF--AKQHAIVFKPCI 66 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH--TTCCEEEEECC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH--CCCEEEEEEecc
Confidence 444567888899999876554444433 367899999976
No 138
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=87.53 E-value=1.5 Score=45.04 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=28.3
Q ss_pred eeEEEEecchhhhc--ccchHHHHHHHHHHHHhhcccCCCCcEEEecc
Q 002135 399 IRFVVIDEAHAYKG--AFGCHTALILRRLCRLCSHVYGSDPSFVFSTA 444 (961)
Q Consensus 399 i~~VVIDEaH~~~~--~fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSA 444 (961)
++.+|+|-...+.. .....+..+++.|..++... +..+++++-
T Consensus 136 ~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~---~i~vi~~~q 180 (251)
T 2zts_A 136 AKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEM---GVTTILTTE 180 (251)
T ss_dssp CSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHH---CCEEEEEEC
T ss_pred CcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHc---CCCeEEEEE
Confidence 48999999988754 23445667777777776553 455555543
No 139
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=87.48 E-value=2.1 Score=55.02 Aligned_cols=85 Identities=12% Similarity=0.089 Sum_probs=70.0
Q ss_pred HHHCCCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEecc-cccccccc
Q 002135 521 MVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATN-ALELGIDV 599 (961)
Q Consensus 521 l~~~g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~-aLe~GIDI 599 (961)
....|.+++|.|+|+..++..++.+++.+. .....+..+++..+..++..+.+.+.+|..+|+|+|. .+...+..
T Consensus 648 ~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~----~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~ 723 (1151)
T 2eyq_A 648 AVDNHKQVAVLVPTTLLAQQHYDNFRDRFA----NWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKF 723 (1151)
T ss_dssp HHTTTCEEEEECSSHHHHHHHHHHHHHHST----TTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCC
T ss_pred HHHhCCeEEEEechHHHHHHHHHHHHHHhh----cCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccc
Confidence 345678999999999999998888876543 2345688899999999999999999999999999997 55666888
Q ss_pred CCccEEEEeC
Q 002135 600 GHIDVTLHLG 609 (961)
Q Consensus 600 p~vd~VI~~~ 609 (961)
.++++||.-.
T Consensus 724 ~~l~lvIiDE 733 (1151)
T 2eyq_A 724 KDLGLLIVDE 733 (1151)
T ss_dssp SSEEEEEEES
T ss_pred cccceEEEec
Confidence 8899888543
No 140
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=87.32 E-value=1.3 Score=45.30 Aligned_cols=40 Identities=18% Similarity=-0.001 Sum_probs=27.3
Q ss_pred CCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccH
Q 002135 269 AGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTK 310 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~Ptr 310 (961)
.|.=.+++++.|||||...+-- +.+... .+.+++++.|.+
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~-~~r~~~-~g~kvli~kp~~ 66 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRR-LRRGIY-AKQKVVVFKPAI 66 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHH-HHHHHH-TTCCEEEEEEC-
T ss_pred CceEEEEECCCCCCHHHHHHHH-HHHHHH-cCCceEEEEecc
Confidence 4566788999999999755433 344433 256789998875
No 141
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=86.74 E-value=2.9 Score=45.92 Aligned_cols=20 Identities=20% Similarity=0.418 Sum_probs=16.7
Q ss_pred CCcEEEEecCCchhHHHHHH
Q 002135 270 GKNVVVATMTSSGKSLCYNL 289 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~~L 289 (961)
+..+++.+|+|+|||.....
T Consensus 45 ~~~vli~G~~G~GKTtl~~~ 64 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKF 64 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 56899999999999986543
No 142
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=86.37 E-value=1.7 Score=50.54 Aligned_cols=41 Identities=24% Similarity=0.244 Sum_probs=26.6
Q ss_pred CCCcEEEEecCCchhHHHHHHHHHHHHhc-CCCCeEEEEccc
Q 002135 269 AGKNVVVATMTSSGKSLCYNLPVLEALSH-DLSSSALYMFPT 309 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~Lpil~~l~~-~~~~~aLvl~Pt 309 (961)
.+.+++|.++||||||.+...-+...+.. .++..-+++...
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDp 207 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDP 207 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECC
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECC
Confidence 46799999999999998765555444443 233334444433
No 143
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=86.30 E-value=2.5 Score=49.02 Aligned_cols=51 Identities=10% Similarity=0.069 Sum_probs=30.7
Q ss_pred CCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHHHHHHHHHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALL 321 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~PtraLa~qq~~~l~ 321 (961)
.|.-++|.+++|+|||...+--+.+.. ...+.+++|++--- =..|...++.
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a-~~~g~~vl~~s~E~-s~~~l~~r~~ 291 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWG-TAMGKKVGLAMLEE-SVEETAEDLI 291 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHT-TTSCCCEEEEESSS-CHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHH-HhcCCcEEEEeccC-CHHHHHHHHH
Confidence 456799999999999976544444433 32255778776421 1234444443
No 144
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=86.21 E-value=1.9 Score=45.68 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=28.2
Q ss_pred eeEEEEecchhhhcc-c--chHHHHHHHHHHHHhhcccCCCCcEEEeccCC
Q 002135 399 IRFVVIDEAHAYKGA-F--GCHTALILRRLCRLCSHVYGSDPSFVFSTATS 446 (961)
Q Consensus 399 i~~VVIDEaH~~~~~-f--g~~~~~ilrrL~~~~~~~~~~~~q~I~lSATl 446 (961)
+++|||||.-.+.+. . ...+..+++.|..++... ...+|++|-..
T Consensus 134 ~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~---g~tvi~i~H~~ 181 (279)
T 1nlf_A 134 RRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADT---GCSIVFLHHAS 181 (279)
T ss_dssp CSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHH---CCEEEEEEEC-
T ss_pred CCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHc---CCEEEEEecCC
Confidence 499999999986542 1 234566777777765431 34667666554
No 145
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=86.15 E-value=3.9 Score=41.77 Aligned_cols=40 Identities=13% Similarity=0.042 Sum_probs=26.1
Q ss_pred CCCcEEEEecCCchhHHHHHHHHHHHHhcC----CCCeEEEEcc
Q 002135 269 AGKNVVVATMTSSGKSLCYNLPVLEALSHD----LSSSALYMFP 308 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~Lpil~~l~~~----~~~~aLvl~P 308 (961)
.|.-+++.+|+|+|||.....-+...+... .+..++|+.-
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~ 66 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDT 66 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEEC
Confidence 467899999999999986654443322211 1456777754
No 146
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=86.01 E-value=3.7 Score=43.17 Aligned_cols=18 Identities=22% Similarity=0.204 Sum_probs=15.6
Q ss_pred CcEEEEecCCchhHHHHH
Q 002135 271 KNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 271 ~~vIv~apTGSGKTla~~ 288 (961)
+++++.+|+|+|||..+.
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 479999999999998654
No 147
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=85.81 E-value=1.2 Score=48.53 Aligned_cols=18 Identities=17% Similarity=0.281 Sum_probs=15.7
Q ss_pred CcEEEEecCCchhHHHHH
Q 002135 271 KNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 271 ~~vIv~apTGSGKTla~~ 288 (961)
+.+++.+|+|+|||..+.
T Consensus 46 ~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp SEEEEESSSSSCHHHHHH
T ss_pred ceEEEECCCCccHHHHHH
Confidence 679999999999998653
No 148
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=85.14 E-value=2.1 Score=47.32 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=16.2
Q ss_pred CCcEEEEecCCchhHHHHH
Q 002135 270 GKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~~ 288 (961)
.+++++.+|+|+|||+.+.
T Consensus 84 ~~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCCEEEECSTTSCHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 3579999999999998654
No 149
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=84.97 E-value=5.3 Score=43.38 Aligned_cols=42 Identities=17% Similarity=0.069 Sum_probs=27.3
Q ss_pred CCCcEEEEecCCchhHHHHHHHHHHHHhc----CCCCeEEEEcccH
Q 002135 269 AGKNVVVATMTSSGKSLCYNLPVLEALSH----DLSSSALYMFPTK 310 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~Lpil~~l~~----~~~~~aLvl~Ptr 310 (961)
.|.-+++.+++|+|||...+--+...... ..+.+++|+.--.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 45789999999999997654444432221 0156788887543
No 150
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=84.88 E-value=3 Score=46.56 Aligned_cols=19 Identities=11% Similarity=0.279 Sum_probs=16.5
Q ss_pred CCcEEEEecCCchhHHHHH
Q 002135 270 GKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~~ 288 (961)
.+++++.+|+|+|||..+.
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4789999999999998654
No 151
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=84.65 E-value=3 Score=55.92 Aligned_cols=48 Identities=23% Similarity=0.196 Sum_probs=34.8
Q ss_pred HHHHHhC------CCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHHH
Q 002135 263 SIMASLA------GKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKAL 312 (961)
Q Consensus 263 ai~~il~------G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~PtraL 312 (961)
.+..++. |+++++.+|+|+|||..+.-.+.+... .+.+++|+..--++
T Consensus 1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~--~G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHAL 1467 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEECTTSCC
T ss_pred HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEEEccccc
Confidence 3666666 689999999999999877555555443 36788888865443
No 152
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=84.54 E-value=2.6 Score=47.24 Aligned_cols=82 Identities=10% Similarity=0.110 Sum_probs=64.7
Q ss_pred HCCCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEeccccc----cccc
Q 002135 523 QHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNALE----LGID 598 (961)
Q Consensus 523 ~~g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~aLe----~GID 598 (961)
..+.++||.++++..+..+++.++... . .+..+..++|+.+..+|....+.+..|+.+|+|+|+-.- .-++
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~----~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~ 136 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLA----D-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLS 136 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHC----C-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHT
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHc----c-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhc
Confidence 467899999999999999988887632 2 345789999999999999999999999999999998321 1155
Q ss_pred cCCccEEEEeC
Q 002135 599 VGHIDVTLHLG 609 (961)
Q Consensus 599 Ip~vd~VI~~~ 609 (961)
..++++||.-.
T Consensus 137 ~~~~~~iViDE 147 (414)
T 3oiy_A 137 QKRFDFVFVDD 147 (414)
T ss_dssp TCCCSEEEESC
T ss_pred cccccEEEEeC
Confidence 56788887443
No 153
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=83.88 E-value=6.8 Score=41.18 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=16.4
Q ss_pred CCCcEEEEecCCchhHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCY 287 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~ 287 (961)
.++++++.+|+|+|||..+
T Consensus 50 ~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCSEEEEESSSSSSHHHHH
T ss_pred CCCeEEEECCCCCcHHHHH
Confidence 4578999999999999765
No 154
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=83.54 E-value=2.8 Score=47.90 Aligned_cols=44 Identities=18% Similarity=0.163 Sum_probs=31.3
Q ss_pred ee--EEEEecchhhhcc-----cchHHHHHHHHHHHHhhcccCCCCcEEEeccC
Q 002135 399 IR--FVVIDEAHAYKGA-----FGCHTALILRRLCRLCSHVYGSDPSFVFSTAT 445 (961)
Q Consensus 399 i~--~VVIDEaH~~~~~-----fg~~~~~ilrrL~~~~~~~~~~~~q~I~lSAT 445 (961)
++ +||||=.+.+... ....+..+.+.|+.++... +..+|++|-.
T Consensus 309 ~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~~Lk~lAke~---~v~vi~lsql 359 (444)
T 3bgw_A 309 GKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMAREL---DVVVIALSQL 359 (444)
T ss_dssp SSCEEEEEECSTTSBCSCSSSCHHHHHHHHHHHHHHHHHHH---TCEEEEEEEC
T ss_pred CCCeEEEEecHHhccCCCCCCCHHHHHHHHHHHHHHHHHHh---CCeEEEEecC
Confidence 38 9999999988642 2335678888888887653 5567776654
No 155
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=83.26 E-value=3.6 Score=45.73 Aligned_cols=39 Identities=13% Similarity=0.100 Sum_probs=26.0
Q ss_pred CCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEccc
Q 002135 269 AGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPT 309 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~Pt 309 (961)
.|.-++|.+++|+|||...+--+.. +... +.+++|+..-
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~-~~~~-g~~vlyi~~E 111 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQ-AQKA-GGTCAFIDAE 111 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH-HHHT-TCCEEEEESS
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHH-HHHC-CCeEEEEECC
Confidence 4567999999999999755433333 3322 4577777754
No 156
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.18 E-value=2.7 Score=49.02 Aligned_cols=18 Identities=11% Similarity=0.158 Sum_probs=15.8
Q ss_pred CcEEEEecCCchhHHHHH
Q 002135 271 KNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 271 ~~vIv~apTGSGKTla~~ 288 (961)
+.+++++|+|+|||..+.
T Consensus 78 ~~lLL~GppGtGKTtla~ 95 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAH 95 (516)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 689999999999998654
No 157
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=81.55 E-value=3.2 Score=53.03 Aligned_cols=84 Identities=12% Similarity=0.144 Sum_probs=66.8
Q ss_pred HHHHCCCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEeccc-c----c
Q 002135 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNA-L----E 594 (961)
Q Consensus 520 ~l~~~g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~a-L----e 594 (961)
.....+.++||.++++..|..+++.+++ +. ..+..+..+|||.+..+|....+.+.+|..+|+|+|+- + .
T Consensus 116 ~~~~~~~~~Lil~PtreLa~Q~~~~l~~-l~----~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~ 190 (1104)
T 4ddu_A 116 WLARKGKKSALVFPTVTLVKQTLERLQK-LA----DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNRE 190 (1104)
T ss_dssp HHHTTTCCEEEEESSHHHHHHHHHHHHT-TS----CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHH
T ss_pred HHHhcCCeEEEEechHHHHHHHHHHHHH-hh----CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHH
Confidence 3345778999999999999999887766 21 34457999999999999999999999999999999972 2 2
Q ss_pred cccccCCccEEEEeC
Q 002135 595 LGIDVGHIDVTLHLG 609 (961)
Q Consensus 595 ~GIDIp~vd~VI~~~ 609 (961)
. ++..++++||.-.
T Consensus 191 ~-l~~~~l~~lViDE 204 (1104)
T 4ddu_A 191 K-LSQKRFDFVFVDD 204 (1104)
T ss_dssp H-HHTSCCSEEEESC
T ss_pred h-hcccCcCEEEEeC
Confidence 2 5667889888544
No 158
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=81.23 E-value=3.2 Score=44.50 Aligned_cols=17 Identities=18% Similarity=0.171 Sum_probs=14.9
Q ss_pred cEEEEecCCchhHHHHH
Q 002135 272 NVVVATMTSSGKSLCYN 288 (961)
Q Consensus 272 ~vIv~apTGSGKTla~~ 288 (961)
++++.+|+|+|||....
T Consensus 48 ~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred eEEEECcCCCCHHHHHH
Confidence 79999999999998653
No 159
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=80.58 E-value=7.3 Score=41.62 Aligned_cols=18 Identities=17% Similarity=0.025 Sum_probs=15.1
Q ss_pred CcEEEEecCCchhHHHHH
Q 002135 271 KNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 271 ~~vIv~apTGSGKTla~~ 288 (961)
+.+++.+|+|+|||..+.
T Consensus 37 ~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp SEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468899999999998654
No 160
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=80.55 E-value=5.1 Score=44.29 Aligned_cols=39 Identities=18% Similarity=0.117 Sum_probs=27.3
Q ss_pred CCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEccc
Q 002135 269 AGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPT 309 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~Pt 309 (961)
.|+-+++.+++|+|||...+--+..... .+.+++|+..-
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~--~g~~vlyid~E 100 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAE 100 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeCC
Confidence 4678999999999999866544444333 24578887753
No 161
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=80.38 E-value=10 Score=40.93 Aligned_cols=25 Identities=16% Similarity=0.143 Sum_probs=18.7
Q ss_pred CCCcEEEEecCCchhHHHHHHHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCYNLPVLE 293 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~Lpil~ 293 (961)
.|.-+++.+++|+|||...+--+.+
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3567999999999999765544443
No 162
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=80.10 E-value=1.2 Score=50.74 Aligned_cols=44 Identities=20% Similarity=0.175 Sum_probs=32.8
Q ss_pred cEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHHHHHHHHHHHHH
Q 002135 272 NVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLA 322 (961)
Q Consensus 272 ~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~PtraLa~qq~~~l~~ 322 (961)
-.++.++.|||||.... +.+ . ....++++||++++.++.+++.+
T Consensus 163 v~~I~G~aGsGKTt~I~----~~~-~--~~~~lVlTpT~~aa~~l~~kl~~ 206 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEIL----SRV-N--FEEDLILVPGRQAAEMIRRRANA 206 (446)
T ss_dssp EEEEEECTTSCHHHHHH----HHC-C--TTTCEEEESCHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHH----HHh-c--cCCeEEEeCCHHHHHHHHHHhhh
Confidence 46799999999998542 222 2 14569999999999988877643
No 163
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=79.92 E-value=3.7 Score=44.38 Aligned_cols=17 Identities=6% Similarity=-0.132 Sum_probs=14.6
Q ss_pred cEEEEecCCchhHHHHH
Q 002135 272 NVVVATMTSSGKSLCYN 288 (961)
Q Consensus 272 ~vIv~apTGSGKTla~~ 288 (961)
..++.+|.|+|||....
T Consensus 20 ~~Lf~Gp~G~GKtt~a~ 36 (305)
T 2gno_A 20 SILINGEDLSYPREVSL 36 (305)
T ss_dssp EEEEECSSSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68999999999997654
No 164
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=79.70 E-value=4.3 Score=44.77 Aligned_cols=39 Identities=21% Similarity=0.172 Sum_probs=26.7
Q ss_pred CCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEccc
Q 002135 269 AGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPT 309 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~Pt 309 (961)
.|+-+++.+|.|||||...+.-+..... .+.+++|+.--
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~--~g~~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQA--AGGIAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEECC
Confidence 4677999999999999765544443332 25677877643
No 165
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=79.38 E-value=7.8 Score=42.45 Aligned_cols=42 Identities=7% Similarity=-0.044 Sum_probs=27.5
Q ss_pred CCCcEEEEecCCchhHHHHHHHHHHHHhcC----CCCeEEEEcccH
Q 002135 269 AGKNVVVATMTSSGKSLCYNLPVLEALSHD----LSSSALYMFPTK 310 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~Lpil~~l~~~----~~~~aLvl~Ptr 310 (961)
.|.-+++.+|+|||||....--+....... .+.+++|+.--.
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 356789999999999976554444322211 256788887544
No 166
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=78.76 E-value=3.8 Score=44.24 Aligned_cols=12 Identities=33% Similarity=0.448 Sum_probs=11.2
Q ss_pred eEEEEecchhhh
Q 002135 400 RFVVIDEAHAYK 411 (961)
Q Consensus 400 ~~VVIDEaH~~~ 411 (961)
++|+|||+|.+.
T Consensus 107 ~vliiDEi~~l~ 118 (324)
T 3u61_B 107 KVIVIDEFDRSG 118 (324)
T ss_dssp EEEEEESCCCGG
T ss_pred eEEEEECCcccC
Confidence 899999999986
No 167
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=78.61 E-value=3.2 Score=44.42 Aligned_cols=17 Identities=18% Similarity=0.436 Sum_probs=14.7
Q ss_pred cEEEEecCCchhHHHHH
Q 002135 272 NVVVATMTSSGKSLCYN 288 (961)
Q Consensus 272 ~vIv~apTGSGKTla~~ 288 (961)
++++.+|+|+|||....
T Consensus 44 ~~ll~G~~G~GKt~la~ 60 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVH 60 (323)
T ss_dssp CEEEECSTTSSHHHHHH
T ss_pred eEEEECcCCCCHHHHHH
Confidence 59999999999997654
No 168
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=78.58 E-value=2.5 Score=48.30 Aligned_cols=19 Identities=16% Similarity=0.196 Sum_probs=16.3
Q ss_pred CCcEEEEecCCchhHHHHH
Q 002135 270 GKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~~ 288 (961)
.+.+++.+|+|+|||+.+.
T Consensus 167 ~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4689999999999998654
No 169
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=78.14 E-value=10 Score=41.77 Aligned_cols=20 Identities=20% Similarity=0.272 Sum_probs=16.7
Q ss_pred CCCcEEEEecCCchhHHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~ 288 (961)
..+.+++.+|+|+|||..+.
T Consensus 116 ~~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 35689999999999998654
No 170
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=77.73 E-value=11 Score=38.53 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=19.0
Q ss_pred hCCCcEEEEecCCchhHHHHHHHH
Q 002135 268 LAGKNVVVATMTSSGKSLCYNLPV 291 (961)
Q Consensus 268 l~G~~vIv~apTGSGKTla~~Lpi 291 (961)
..|.-+.+.+|+|||||.....-+
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHH
Confidence 467889999999999997655433
No 171
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=77.41 E-value=8.4 Score=42.68 Aligned_cols=18 Identities=17% Similarity=0.147 Sum_probs=14.7
Q ss_pred CcEEE--EecCCchhHHHHH
Q 002135 271 KNVVV--ATMTSSGKSLCYN 288 (961)
Q Consensus 271 ~~vIv--~apTGSGKTla~~ 288 (961)
..+++ .+|.|+|||....
T Consensus 51 ~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHH
Confidence 46888 8999999998654
No 172
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=76.99 E-value=1.8 Score=40.90 Aligned_cols=21 Identities=10% Similarity=-0.088 Sum_probs=17.6
Q ss_pred HhCCCcEEEEecCCchhHHHH
Q 002135 267 SLAGKNVVVATMTSSGKSLCY 287 (961)
Q Consensus 267 il~G~~vIv~apTGSGKTla~ 287 (961)
+..+.++++.+++|+|||..+
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHH
T ss_pred hCCCCcEEEECCCCccHHHHH
Confidence 446789999999999999754
No 173
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=76.39 E-value=5.6 Score=43.33 Aligned_cols=18 Identities=11% Similarity=0.121 Sum_probs=15.2
Q ss_pred CcEEEEecCCchhHHHHH
Q 002135 271 KNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 271 ~~vIv~apTGSGKTla~~ 288 (961)
.++++.+|+|+|||....
T Consensus 37 ~~~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCM 54 (354)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 459999999999998654
No 174
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=76.01 E-value=11 Score=43.64 Aligned_cols=19 Identities=16% Similarity=0.296 Sum_probs=16.2
Q ss_pred CCcEEEEecCCchhHHHHH
Q 002135 270 GKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~~ 288 (961)
.+++++.+|+|+|||+.+.
T Consensus 238 ~~~vLL~GppGtGKT~lAr 256 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIAR 256 (489)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCcEEEECcCCCCHHHHHH
Confidence 4679999999999998653
No 175
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=75.55 E-value=1.8 Score=41.00 Aligned_cols=21 Identities=10% Similarity=-0.016 Sum_probs=17.9
Q ss_pred hCCCcEEEEecCCchhHHHHH
Q 002135 268 LAGKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 268 l~G~~vIv~apTGSGKTla~~ 288 (961)
..+.++++.+|+|+|||..+.
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHH
Confidence 466799999999999998653
No 176
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=74.55 E-value=7.7 Score=49.34 Aligned_cols=91 Identities=15% Similarity=0.153 Sum_probs=65.0
Q ss_pred HHHHHHHHCCCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEecc-ccc
Q 002135 516 YLFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATN-ALE 594 (961)
Q Consensus 516 ~ll~~l~~~g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~-aLe 594 (961)
-++..+...+.++||.++++..|..+++.++..+..........+..++|+.+..++.+..+.+.+ .+|+|+|+ .+.
T Consensus 90 p~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~ 167 (1054)
T 1gku_B 90 AMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLS 167 (1054)
T ss_dssp HHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHH
T ss_pred HHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHH
Confidence 334445556789999999999999999888775543221111268899999999988888887777 89999998 222
Q ss_pred cccc-cCCccEEEEe
Q 002135 595 LGID-VGHIDVTLHL 608 (961)
Q Consensus 595 ~GID-Ip~vd~VI~~ 608 (961)
.-+. +..+++||.-
T Consensus 168 ~~l~~L~~l~~lViD 182 (1054)
T 1gku_B 168 KHYRELGHFDFIFVD 182 (1054)
T ss_dssp HCSTTSCCCSEEEES
T ss_pred HHHHHhccCCEEEEe
Confidence 2222 5577887743
No 177
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=74.52 E-value=9.6 Score=42.07 Aligned_cols=42 Identities=24% Similarity=0.289 Sum_probs=27.2
Q ss_pred CCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHHH
Q 002135 269 AGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKAL 312 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~PtraL 312 (961)
.|.-++|.+|+|||||... +.+...+.. .+.+++|+..-..+
T Consensus 60 ~G~i~~I~GppGsGKSTLa-l~la~~~~~-~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLA-LHAIAEAQK-MGGVAAFIDAEHAL 101 (356)
T ss_dssp TTEEEEEEESTTSSHHHHH-HHHHHHHHH-TTCCEEEEESSCCC
T ss_pred CCcEEEEECCCCCCHHHHH-HHHHHHHHh-cCCeEEEEeccccc
Confidence 4567899999999999654 333333332 35678888764433
No 178
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.25 E-value=15 Score=41.15 Aligned_cols=18 Identities=28% Similarity=0.338 Sum_probs=15.9
Q ss_pred CCcEEEEecCCchhHHHH
Q 002135 270 GKNVVVATMTSSGKSLCY 287 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~ 287 (961)
.+.+++.+|+|+|||+.+
T Consensus 182 prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CCCEEEESCSSSSHHHHH
T ss_pred CCceEEeCCCCCCHHHHH
Confidence 478999999999999864
No 179
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=73.40 E-value=4.3 Score=45.96 Aligned_cols=31 Identities=23% Similarity=0.250 Sum_probs=22.2
Q ss_pred cHHHHHHHHHHhC--CCcEEEEecCCchhHHHH
Q 002135 257 YSHQAESIMASLA--GKNVVVATMTSSGKSLCY 287 (961)
Q Consensus 257 ~~~Q~~ai~~il~--G~~vIv~apTGSGKTla~ 287 (961)
.+-+.+++..++. |..+++++|||||||...
T Consensus 152 ~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL 184 (418)
T 1p9r_A 152 TAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTL 184 (418)
T ss_dssp CHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHH
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 3455666666553 456899999999999753
No 180
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=72.59 E-value=16 Score=41.60 Aligned_cols=50 Identities=18% Similarity=0.124 Sum_probs=31.6
Q ss_pred CcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEc--ccHHHHHHHHHHHHH
Q 002135 271 KNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMF--PTKALAQDQLRALLA 322 (961)
Q Consensus 271 ~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~--PtraLa~qq~~~l~~ 322 (961)
.-+++++++|+|||....--+ ..+. ..+.+++++. |.+.-+.+|.+.+..
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA-~~l~-~~G~kVllv~~D~~R~aa~eqL~~~~~ 152 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLA-RYFQ-KRGYKVGVVCSDTWRPGAYHQLRQLLD 152 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHH-HHHH-TTTCCEEEEECCCSSTHHHHHHHHHHG
T ss_pred eEEEEECcCCCCHHHHHHHHH-HHHH-HCCCeEEEEeCCCcchhHHHHHHHHHH
Confidence 468899999999998654322 2233 3456666665 666666666555433
No 181
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=72.56 E-value=6 Score=46.03 Aligned_cols=38 Identities=21% Similarity=0.120 Sum_probs=26.8
Q ss_pred HHHhCCCCCCcHHHHHHHHH-HhCCCcEEEEecCCchhHHH
Q 002135 247 ALKSTGISKLYSHQAESIMA-SLAGKNVVVATMTSSGKSLC 286 (961)
Q Consensus 247 ~L~~~g~~~l~~~Q~~ai~~-il~G~~vIv~apTGSGKTla 286 (961)
.|.+.|. +.+.+.+-+.. +..|.++++++|||||||..
T Consensus 238 ~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 238 DLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 3445553 45555555554 45788999999999999975
No 182
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=71.77 E-value=24 Score=39.52 Aligned_cols=40 Identities=15% Similarity=0.041 Sum_probs=26.0
Q ss_pred CCCcEEEEecCCchhHHHHHHHHHHHHhcC----CCCeEEEEcc
Q 002135 269 AGKNVVVATMTSSGKSLCYNLPVLEALSHD----LSSSALYMFP 308 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~Lpil~~l~~~----~~~~aLvl~P 308 (961)
.|.-+.|.+|+|||||.....-++..+... .+..++|+.-
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~ 220 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDT 220 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeC
Confidence 456799999999999976543333332211 2457888764
No 183
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=70.79 E-value=21 Score=40.39 Aligned_cols=49 Identities=16% Similarity=0.050 Sum_probs=29.6
Q ss_pred CCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEc--ccHHHHHHHHHHH
Q 002135 270 GKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMF--PTKALAQDQLRAL 320 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~--PtraLa~qq~~~l 320 (961)
+.-+++++++|+|||....--+. .+.. .+.+++++. +.+.-+.+|...+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~-~l~~-~G~kVllv~~D~~r~~a~eqL~~~ 147 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAY-FYKK-RGYKVGLVAADVYRPAAYDQLLQL 147 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHH-HHHH-TTCCEEEEEECCSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-HHHH-cCCeEEEEecCccchhHHHHHHHH
Confidence 45688899999999976543332 2222 355666655 5555555555444
No 184
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=70.67 E-value=3.9 Score=46.31 Aligned_cols=44 Identities=14% Similarity=0.122 Sum_probs=32.4
Q ss_pred CCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQ 314 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~PtraLa~ 314 (961)
...|++|.++||||||... -+++..+.. .+..++++=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~-~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLL-RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHH-TTCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHH-CCCcEEEEeCCCchhH
Confidence 3479999999999999874 344444443 3567888889888754
No 185
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=70.39 E-value=42 Score=36.02 Aligned_cols=49 Identities=16% Similarity=0.136 Sum_probs=27.2
Q ss_pred CCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEc--ccHHHHHHHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMF--PTKALAQDQLRA 319 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~--PtraLa~qq~~~ 319 (961)
.++-+.+++++|+|||.....-+.. +.. .+.+++++. +.+.-+.+|.+.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~-l~~-~g~kV~lv~~D~~r~~a~eqL~~ 153 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKM-FVD-EGKSVVLAAADTFRAAAIEQLKI 153 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH-HHH-TTCCEEEEEECTTCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHH-HHh-cCCEEEEEccccccHHHHHHHHH
Confidence 3456889999999999754432221 222 245555543 344444444433
No 186
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=70.01 E-value=16 Score=37.28 Aligned_cols=75 Identities=16% Similarity=0.079 Sum_probs=51.3
Q ss_pred CCCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEecc-----ccc-ccc
Q 002135 524 HGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATN-----ALE-LGI 597 (961)
Q Consensus 524 ~g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~-----aLe-~GI 597 (961)
.+.++||.++++..++.+.+.++..... .+..+..++||.+..++...... ..+|+|+|+ .+. ..+
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~ 172 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRA----CRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKT 172 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSC
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhh----cCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCC
Confidence 3568999999999999998888765443 23467889999988766554432 468999996 111 123
Q ss_pred ccCCccEEE
Q 002135 598 DVGHIDVTL 606 (961)
Q Consensus 598 DIp~vd~VI 606 (961)
++.+++++|
T Consensus 173 ~~~~~~~lV 181 (242)
T 3fe2_A 173 NLRRTTYLV 181 (242)
T ss_dssp CCTTCCEEE
T ss_pred CcccccEEE
Confidence 455555555
No 187
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=68.09 E-value=12 Score=49.69 Aligned_cols=37 Identities=19% Similarity=0.131 Sum_probs=25.6
Q ss_pred CCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcc
Q 002135 270 GKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFP 308 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~P 308 (961)
|..+++.+++|+|||...+--+..... .+.+++|+.-
T Consensus 732 G~lVlI~G~PG~GKTtLal~lA~~aa~--~g~~VlyiS~ 768 (1706)
T 3cmw_A 732 GRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDA 768 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEECT
T ss_pred CceEEEECCCCCCcHHHHHHHHHHHHH--cCCCeEEEec
Confidence 468999999999999765544444332 2456777764
No 188
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=67.63 E-value=4.1 Score=40.80 Aligned_cols=40 Identities=20% Similarity=0.022 Sum_probs=27.4
Q ss_pred CCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccH
Q 002135 269 AGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTK 310 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~Ptr 310 (961)
.|+=.++++|+|||||.+.+--+... .. .+.+++++.|.+
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~-~~-~g~kV~v~k~~~ 46 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRA-KI-AKQKIQVFKPEI 46 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH-HH-TTCCEEEEEEC-
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH-HH-CCCEEEEEEecc
Confidence 35567888999999997755444333 32 367899998874
No 189
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.11 E-value=36 Score=38.42 Aligned_cols=18 Identities=17% Similarity=0.303 Sum_probs=15.6
Q ss_pred CCcEEEEecCCchhHHHH
Q 002135 270 GKNVVVATMTSSGKSLCY 287 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~ 287 (961)
.+.+++.+|+|+|||+.+
T Consensus 206 prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CCEEEEESCTTTTHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 367999999999999865
No 190
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=66.86 E-value=7.8 Score=42.80 Aligned_cols=20 Identities=35% Similarity=0.301 Sum_probs=16.3
Q ss_pred hCCCcEEEEecCCchhHHHH
Q 002135 268 LAGKNVVVATMTSSGKSLCY 287 (961)
Q Consensus 268 l~G~~vIv~apTGSGKTla~ 287 (961)
..+..+++++|||||||...
T Consensus 121 ~~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35568999999999999753
No 191
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=66.71 E-value=4.2 Score=41.87 Aligned_cols=40 Identities=13% Similarity=-0.046 Sum_probs=27.8
Q ss_pred CCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccH
Q 002135 269 AGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTK 310 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~Ptr 310 (961)
.|.-+++++++|+|||...+--+..... .+.+++++.|..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~--~g~kVli~~~~~ 50 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEY--ADVKYLVFKPKI 50 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHH--TTCCEEEEEECC
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHh--cCCEEEEEEecc
Confidence 4566888899999999876544444332 256788888765
No 192
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=66.62 E-value=17 Score=45.07 Aligned_cols=119 Identities=16% Similarity=0.017 Sum_probs=0.0
Q ss_pred HHHHHHHhCCC--cEEEEecCCchhHHHHHHHHHHHHhcCC-----CCeEEEEcccHHHHHHHHHHHHHhHhhCCCCccE
Q 002135 261 AESIMASLAGK--NVVVATMTSSGKSLCYNLPVLEALSHDL-----SSSALYMFPTKALAQDQLRALLAMTKAFDASIDI 333 (961)
Q Consensus 261 ~~ai~~il~G~--~vIv~apTGSGKTla~~Lpil~~l~~~~-----~~~aLvl~PtraLa~qq~~~l~~l~~~~~~~i~v 333 (961)
.+.+..+..+. ++++++|+|+|||.....-+-....... +..++.+..
T Consensus 180 ~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~------------------------- 234 (854)
T 1qvr_A 180 RRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQM------------------------- 234 (854)
T ss_dssp HHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-------------------------
T ss_pred HHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeeh-------------------------
Q ss_pred EEEcCCCcHHHHHHHhcCCcEEEeChhHHHHhhcCCCchhHHHhhhhhhhhhhcchhhhhhhhcceeEEEEecchhhhc-
Q 002135 334 GVYDGDTTQKDRMWLRDNARLLITNPDMLHMSILPYHGQFSRILSNLRLIAFSLVTTEVYLIFLFIRFVVIDEAHAYKG- 412 (961)
Q Consensus 334 ~~~~Gd~~~~~r~~l~~~~~IlItTPe~L~~~lL~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~i~~VVIDEaH~~~~- 412 (961)
..+..+....-...+++...+ ........- .+++|||+|.+.+
T Consensus 235 ------------~~l~~g~~~~g~~~~~l~~~~-----~~~~~~~~~-------------------~iL~IDEi~~l~~~ 278 (854)
T 1qvr_A 235 ------------GSLLAGAKYRGEFEERLKAVI-----QEVVQSQGE-------------------VILFIDELHTVVGA 278 (854)
T ss_dssp -----------------------CHHHHHHHHH-----HHHHTTCSS-------------------EEEEECCC------
T ss_pred ------------HHhhccCccchHHHHHHHHHH-----HHHHhcCCC-------------------eEEEEecHHHHhcc
Q ss_pred ccchHHHHHHHHHHHHhhcccCCCCcEEEec
Q 002135 413 AFGCHTALILRRLCRLCSHVYGSDPSFVFST 443 (961)
Q Consensus 413 ~fg~~~~~ilrrL~~~~~~~~~~~~q~I~lS 443 (961)
............|+.+... ...++|+.+
T Consensus 279 ~~~~g~~~~~~~L~~~l~~---~~i~~I~at 306 (854)
T 1qvr_A 279 GKAEGAVDAGNMLKPALAR---GELRLIGAT 306 (854)
T ss_dssp -------------HHHHHT---TCCCEEEEE
T ss_pred CCccchHHHHHHHHHHHhC---CCeEEEEec
No 193
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=66.40 E-value=7.1 Score=38.70 Aligned_cols=34 Identities=18% Similarity=0.224 Sum_probs=22.2
Q ss_pred CcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEE
Q 002135 271 KNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYM 306 (961)
Q Consensus 271 ~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl 306 (961)
+++++.+|+|+|||..... +...+.. .+..++++
T Consensus 55 ~~~~l~G~~GtGKT~la~~-i~~~~~~-~~~~~~~~ 88 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAA-IANELAK-RNVSSLIV 88 (202)
T ss_dssp CEEEEECSTTSSHHHHHHH-HHHHHHT-TTCCEEEE
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHH-cCCeEEEE
Confidence 7899999999999986543 3333332 24455554
No 194
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=66.39 E-value=17 Score=35.99 Aligned_cols=56 Identities=16% Similarity=0.160 Sum_probs=43.1
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHHhHhhCCCCccEEEEcCCCcHHHHHHHh-----cCCcEEEeCh
Q 002135 298 DLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLR-----DNARLLITNP 359 (961)
Q Consensus 298 ~~~~~aLvl~PtraLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~~~r~~l~-----~~~~IlItTP 359 (961)
..+.++|+.++++.-+....+.|... ++.+..++|+.+..+|..+. ...+|+|+|.
T Consensus 52 ~~~~~~lVF~~~~~~~~~l~~~L~~~------g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~ 112 (191)
T 2p6n_A 52 KTPPPVLIFAEKKADVDAIHEYLLLK------GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD 112 (191)
T ss_dssp TSCSCEEEECSCHHHHHHHHHHHHHH------TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH
T ss_pred hCCCCEEEEECCHHHHHHHHHHHHHc------CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC
Confidence 34568999999999999888887664 36788899998887775432 3478999993
No 195
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=66.13 E-value=30 Score=35.89 Aligned_cols=75 Identities=15% Similarity=0.238 Sum_probs=50.7
Q ss_pred CCCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEecc-----ccc--cc
Q 002135 524 HGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATN-----ALE--LG 596 (961)
Q Consensus 524 ~g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~-----aLe--~G 596 (961)
.+.++|+.++++..++.+++.+++.+. .....+..+.|+......... +..| .+|+|+|+ .+. .+
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~ 196 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMT----HHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPG 196 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTT----TCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHh----hcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCC
Confidence 467899999999999999888776443 234467788888876654433 3334 78999995 111 13
Q ss_pred cccCCccEEE
Q 002135 597 IDVGHIDVTL 606 (961)
Q Consensus 597 IDIp~vd~VI 606 (961)
++..++++||
T Consensus 197 ~~~~~l~~lV 206 (262)
T 3ly5_A 197 FMYKNLQCLV 206 (262)
T ss_dssp CCCTTCCEEE
T ss_pred cccccCCEEE
Confidence 5556666655
No 196
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=65.29 E-value=5 Score=44.39 Aligned_cols=20 Identities=35% Similarity=0.313 Sum_probs=17.9
Q ss_pred HhCCCcEEEEecCCchhHHH
Q 002135 267 SLAGKNVVVATMTSSGKSLC 286 (961)
Q Consensus 267 il~G~~vIv~apTGSGKTla 286 (961)
+..|..+++++|||||||..
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 55899999999999999974
No 197
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=65.14 E-value=7.9 Score=41.73 Aligned_cols=36 Identities=19% Similarity=0.094 Sum_probs=23.8
Q ss_pred CCcEEEEecCCchhHHHHHHHHHHHHh-cCCCCeEEEEc
Q 002135 270 GKNVVVATMTSSGKSLCYNLPVLEALS-HDLSSSALYMF 307 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~~Lpil~~l~-~~~~~~aLvl~ 307 (961)
++++++.+|+|+|||.....-+- .+. . .+..++++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~-~~~~~-~g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH-ELSEK-KGVSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH-HHHHH-SCCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHH-HHHHh-cCCcEEEEE
Confidence 57999999999999986543333 333 2 245565554
No 198
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=65.02 E-value=16 Score=35.42 Aligned_cols=56 Identities=16% Similarity=0.176 Sum_probs=43.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHHhHhhCCCCccEEEEcCCCcHHHHHHHh-----cCCcEEEeCh
Q 002135 298 DLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLR-----DNARLLITNP 359 (961)
Q Consensus 298 ~~~~~aLvl~PtraLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~~~r~~l~-----~~~~IlItTP 359 (961)
.+..++|+.++++.-+....+.|.+. ++.+..++|+.+..+|..+. ...+|+|+|.
T Consensus 32 ~~~~~~lVF~~~~~~~~~l~~~L~~~------~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~ 92 (175)
T 2rb4_A 32 ITIGQAIIFCQTRRNAKWLTVEMIQD------GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN 92 (175)
T ss_dssp SCCSEEEEECSCHHHHHHHHHHHHTT------TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC
T ss_pred CCCCCEEEEECCHHHHHHHHHHHHHc------CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec
Confidence 34678999999999988887777653 36788999999888775432 2478999993
No 199
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=63.32 E-value=14 Score=35.30 Aligned_cols=54 Identities=19% Similarity=0.190 Sum_probs=42.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhHhhCCCCccEEEEcCCCcHHHHHHHh-----cCCcEEEeC
Q 002135 299 LSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLR-----DNARLLITN 358 (961)
Q Consensus 299 ~~~~aLvl~PtraLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~~~r~~l~-----~~~~IlItT 358 (961)
.+.++|+.++++.-+....+.|.+. ++.+..++|+.+..+|.... ...+|+|+|
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~~------~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T 92 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDDL------GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT 92 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHT------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHc------CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEC
Confidence 4568999999999998888877663 36788999998888775432 246899999
No 200
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=63.19 E-value=6.6 Score=39.79 Aligned_cols=36 Identities=19% Similarity=-0.038 Sum_probs=29.2
Q ss_pred CCCCcHHHHHHHHHHhCCCcEEEEecCCchhHHHHH
Q 002135 253 ISKLYSHQAESIMASLAGKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 253 ~~~l~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~ 288 (961)
++.-+.-|..++..+..|.-+.+.+|.|||||...-
T Consensus 5 i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~ 40 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAM 40 (208)
T ss_dssp CCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHHH
T ss_pred cccCCHhHHHHHHhccCCCEEEEECCCCCCHHHHHH
Confidence 444455678889999999999999999999997543
No 201
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=61.85 E-value=19 Score=34.90 Aligned_cols=70 Identities=10% Similarity=0.074 Sum_probs=48.9
Q ss_pred CchhHHHHHHHHHHHHhcCCCCeEEEEcccHHHHHHHHHHHHHhHhhCCCCccEEEEcCCCcHHHHHHH----h-cCCcE
Q 002135 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWL----R-DNARL 354 (961)
Q Consensus 280 GSGKTla~~Lpil~~l~~~~~~~aLvl~PtraLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~~~r~~l----~-~~~~I 354 (961)
...|.. .+.-++.. .++.++|+.++++.-+....+.|... ++.+..++|+.+..+|... + ...+|
T Consensus 15 ~~~K~~-~L~~ll~~---~~~~~~lVF~~~~~~~~~l~~~L~~~------~~~~~~~hg~~~~~~r~~~~~~f~~g~~~v 84 (172)
T 1t5i_A 15 DNEKNR-KLFDLLDV---LEFNQVVIFVKSVQRCIALAQLLVEQ------NFPAIAIHRGMPQEERLSRYQQFKDFQRRI 84 (172)
T ss_dssp GGGHHH-HHHHHHHH---SCCSSEEEECSSHHHHHHHHHHHHHT------TCCEEEECTTSCHHHHHHHHHHHHTTSCSE
T ss_pred hHHHHH-HHHHHHHh---CCCCcEEEEECCHHHHHHHHHHHHhc------CCCEEEEECCCCHHHHHHHHHHHHCCCCcE
Confidence 355643 33333332 34568999999999998888877663 3678899999888877543 2 34789
Q ss_pred EEeCh
Q 002135 355 LITNP 359 (961)
Q Consensus 355 lItTP 359 (961)
+|+|.
T Consensus 85 LvaT~ 89 (172)
T 1t5i_A 85 LVATN 89 (172)
T ss_dssp EEESS
T ss_pred EEECC
Confidence 99993
No 202
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=59.93 E-value=5.6 Score=43.47 Aligned_cols=20 Identities=45% Similarity=0.504 Sum_probs=17.5
Q ss_pred HhCCCcEEEEecCCchhHHH
Q 002135 267 SLAGKNVVVATMTSSGKSLC 286 (961)
Q Consensus 267 il~G~~vIv~apTGSGKTla 286 (961)
+..|+.+.+++|||||||..
T Consensus 168 i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH
T ss_pred ccCCCEEEEECCCCCCHHHH
Confidence 45789999999999999973
No 203
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=59.71 E-value=7.5 Score=43.28 Aligned_cols=42 Identities=17% Similarity=0.238 Sum_probs=29.7
Q ss_pred hCCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHH
Q 002135 268 LAGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKA 311 (961)
Q Consensus 268 l~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~Ptra 311 (961)
..+.+++|+++||||||.....-+.... ..+.+++++=|..+
T Consensus 33 ~~~~~~~i~G~~G~GKs~~~~~~~~~~~--~~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 33 RTNSNWTILAKPGAGKSFTAKMLLLREY--MQGSRVIIIDPERE 74 (392)
T ss_dssp BCCCCEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEEESSCC
T ss_pred cccCceEEEcCCCCCHHHHHHHHHHHHH--HCCCEEEEEeCCcC
Confidence 3567999999999999976554443333 23667888878654
No 204
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=59.54 E-value=19 Score=36.67 Aligned_cols=61 Identities=8% Similarity=0.048 Sum_probs=36.5
Q ss_pred CCCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEecc
Q 002135 524 HGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATN 591 (961)
Q Consensus 524 ~g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~ 591 (961)
.+.++||.++++..+..+++.++.... .....+...+|+..... ..+.+..+..+++|+|.
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~----~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp 157 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGD----YMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTP 157 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTT----TTTCCEEEECC----------------CCCSEEEECH
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhh----hcCceEEEEECCCchHH---HHHHHhcCCCCEEEECH
Confidence 356899999999999998887766432 23445677788765432 23455567789999994
No 205
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=59.29 E-value=18 Score=48.02 Aligned_cols=45 Identities=22% Similarity=0.180 Sum_probs=32.1
Q ss_pred CCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHHHHHHH
Q 002135 270 GKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQ 316 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~PtraLa~qq 316 (961)
|+-+.+.+|.|||||...+ +++....+ .+..++|+.+-.+|....
T Consensus 1431 g~~iei~g~~~sGkttl~~-~~~a~~~~-~g~~~~~i~~e~~~~~~~ 1475 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTL-QVIAAAQR-EGKTCAFIDAEHALDPIY 1475 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHH-HHHHHHHH-TTCCEEEECTTSCCCHHH
T ss_pred CCEEEEEcCCCCCHHHHHH-HHHHHHHh-cCCeEEEEecCCCCCHHH
Confidence 4679999999999998764 44433333 367888888876665543
No 206
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=59.08 E-value=19 Score=34.37 Aligned_cols=55 Identities=16% Similarity=0.209 Sum_probs=42.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhHhhCCCCccEEEEcCCCcHHHHHHHh-----cCCcEEEeCh
Q 002135 299 LSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLR-----DNARLLITNP 359 (961)
Q Consensus 299 ~~~~aLvl~PtraLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~~~r~~l~-----~~~~IlItTP 359 (961)
++.++|+.++++.-+....+.|... ++.+..++|+.+..+|..+. ...+|+|+|.
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 88 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRND------KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD 88 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHT------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc------CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 4678999999999998888777663 36788999998888775432 3468999983
No 207
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=58.63 E-value=24 Score=35.74 Aligned_cols=59 Identities=14% Similarity=0.085 Sum_probs=40.9
Q ss_pred CCCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEecc
Q 002135 524 HGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATN 591 (961)
Q Consensus 524 ~g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~ 591 (961)
.+.++||.++++..++.+++.+++... .....+..++|+.+..+..... +..+|+|+|.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp 154 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGK----NHDFSAGLIIGGKDLKHEAERI-----NNINILVCTP 154 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTT----TSSCCEEEECCC--CHHHHHHH-----TTCSEEEECH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhC----CCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECH
Confidence 467899999999999998887766432 2345678889987655443322 3578999986
No 208
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=58.59 E-value=9.9 Score=43.80 Aligned_cols=88 Identities=15% Similarity=0.175 Sum_probs=56.2
Q ss_pred CCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHHHHHHHHHHHHHhHhhCCCCccEEEE--------cCCC
Q 002135 269 AGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVY--------DGDT 340 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~PtraLa~qq~~~l~~l~~~~~~~i~v~~~--------~Gd~ 340 (961)
.|....+.+-||||||++..- +.+..+..+|+|+|+...|.+.++.++.+... . |..+ +...
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~-----l~~~~~~p~lvv~~~~~~A~~l~~~l~~~~~~---~--v~~fp~~e~lpyd~~~ 82 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAE-----IAERHAGPVVLIAPDMQNALRLHDEISQFTDQ---M--VMNLADWETLPYDSFS 82 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHH-----HHHHSSSCEEEEESSHHHHHHHHHHHHHTCSS---C--EEECCCCCSCTTCSSC
T ss_pred CCCeEEEeCCCchHHHHHHHH-----HHHHhCCCEEEEeCCHHHHHHHHHHHHhhCCC---c--EEEEeCcccccccccC
Confidence 456788999999999975322 11222456899999999999999999887431 1 3332 2222
Q ss_pred cHHH----HH----HH-hcCCcEEEeChhHHHHhh
Q 002135 341 TQKD----RM----WL-RDNARLLITNPDMLHMSI 366 (961)
Q Consensus 341 ~~~~----r~----~l-~~~~~IlItTPe~L~~~l 366 (961)
+..+ |. .+ .....|+|+|...+...+
T Consensus 83 p~~~~~~~Rl~~l~~L~~~~~~ivv~sv~al~~~~ 117 (483)
T 3hjh_A 83 PHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRV 117 (483)
T ss_dssp CCHHHHHHHHHHHHHGGGCCSSEEEEEHHHHHBCC
T ss_pred CChHHHHHHHHHHHHHHhCCCCEEEEEHHHHhhcC
Confidence 2222 21 12 234679999998876543
No 209
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=58.47 E-value=11 Score=52.37 Aligned_cols=51 Identities=14% Similarity=0.233 Sum_probs=35.8
Q ss_pred cccHHHHHHHHhCCCCCCcHHHH-HHH---HHHhCCCcEEEEecCCchhHHHHHHH
Q 002135 239 ALLDNTKSALKSTGISKLYSHQA-ESI---MASLAGKNVVVATMTSSGKSLCYNLP 290 (961)
Q Consensus 239 ~L~~~l~~~L~~~g~~~l~~~Q~-~ai---~~il~G~~vIv~apTGSGKTla~~Lp 290 (961)
.+.+.+.+.+.+.|+. +.+.+. +++ +.+...+.+++++|||||||.++..-
T Consensus 889 ~l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~L 943 (2695)
T 4akg_A 889 AIVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTV 943 (2695)
T ss_dssp HHHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHHH
Confidence 3556677777777874 566553 232 33456788999999999999987643
No 210
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=58.31 E-value=37 Score=33.75 Aligned_cols=77 Identities=12% Similarity=0.141 Sum_probs=51.8
Q ss_pred CCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEeccc-c-----ccccc
Q 002135 525 GLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNA-L-----ELGID 598 (961)
Q Consensus 525 g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~a-L-----e~GID 598 (961)
+.++||.|+++..++.+++.+++..... ....+..++|+.+..++.. .+.++..+++|+|.- + ...++
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~---~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~ 155 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYM---PNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLN 155 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTS---TTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSC
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhC---CCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCC
Confidence 3489999999999999888776643221 1346888999988766543 344567799999972 1 12345
Q ss_pred cCCccEEEE
Q 002135 599 VGHIDVTLH 607 (961)
Q Consensus 599 Ip~vd~VI~ 607 (961)
..++++||.
T Consensus 156 ~~~~~~lVi 164 (220)
T 1t6n_A 156 LKHIKHFIL 164 (220)
T ss_dssp CTTCCEEEE
T ss_pred cccCCEEEE
Confidence 556666553
No 211
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=58.21 E-value=62 Score=33.10 Aligned_cols=75 Identities=15% Similarity=0.089 Sum_probs=50.5
Q ss_pred CCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEeccc-----cc--ccc
Q 002135 525 GLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNA-----LE--LGI 597 (961)
Q Consensus 525 g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~a-----Le--~GI 597 (961)
+.++||.++++..++.+++.++..... .+..+..++||....++.... .+..+|+|+|.- +. .++
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~ 182 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSS----IGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGF 182 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGG----GTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTC
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcc----CCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCc
Confidence 457999999999999998888764432 344678889998766544332 246789999962 11 234
Q ss_pred ccCCccEEEE
Q 002135 598 DVGHIDVTLH 607 (961)
Q Consensus 598 DIp~vd~VI~ 607 (961)
++..+++||.
T Consensus 183 ~l~~~~~lVi 192 (249)
T 3ber_A 183 NLRALKYLVM 192 (249)
T ss_dssp CCTTCCEEEE
T ss_pred CccccCEEEE
Confidence 5556665553
No 212
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=58.08 E-value=39 Score=41.47 Aligned_cols=19 Identities=16% Similarity=0.296 Sum_probs=16.4
Q ss_pred CCCcEEEEecCCchhHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCY 287 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~ 287 (961)
.++++++++|+|+|||..+
T Consensus 237 ~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCEEEECSCTTSSHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 4678999999999999854
No 213
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=57.94 E-value=6.2 Score=37.97 Aligned_cols=19 Identities=21% Similarity=0.200 Sum_probs=16.0
Q ss_pred CCcEEEEecCCchhHHHHH
Q 002135 270 GKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~~ 288 (961)
+.++++++|+|+|||....
T Consensus 43 ~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp SCEEEEECCTTSCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 3689999999999997653
No 214
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=57.54 E-value=12 Score=48.33 Aligned_cols=56 Identities=14% Similarity=0.101 Sum_probs=44.2
Q ss_pred CCCcEEEEecCCchhHHHHHHHHHHHHhcC----------CCCeEEEEcccHHHHHHHHHHHHHhHh
Q 002135 269 AGKNVVVATMTSSGKSLCYNLPVLEALSHD----------LSSSALYMFPTKALAQDQLRALLAMTK 325 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~Lpil~~l~~~----------~~~~aLvl~PtraLa~qq~~~l~~l~~ 325 (961)
.|. .+|.|+-|||||.+-.--++..+... ....+|+|+=|++-|.+..+++.+...
T Consensus 16 ~g~-~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L~ 81 (1180)
T 1w36_B 16 QGE-RLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIH 81 (1180)
T ss_dssp SSC-EEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CCC-EEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHHH
Confidence 444 49999999999998777777777632 124799999999999999999877543
No 215
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=56.84 E-value=4.9 Score=39.37 Aligned_cols=20 Identities=15% Similarity=0.122 Sum_probs=16.7
Q ss_pred hCCCcEEEEecCCchhHHHH
Q 002135 268 LAGKNVVVATMTSSGKSLCY 287 (961)
Q Consensus 268 l~G~~vIv~apTGSGKTla~ 287 (961)
..|+-+++++|+|||||...
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35778999999999999754
No 216
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=56.53 E-value=24 Score=41.72 Aligned_cols=76 Identities=14% Similarity=0.077 Sum_probs=58.9
Q ss_pred CCCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHH--hCCCceEEEeccc-c-------
Q 002135 524 HGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDF--FGGKLCGVAATNA-L------- 593 (961)
Q Consensus 524 ~g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f--~~G~~~vLVAT~a-L------- 593 (961)
.+.++||.++++..++.....+++ .+..+..++|+.+..++..+...+ ..+..++|++|+- +
T Consensus 83 ~~g~~lVisP~~~L~~q~~~~l~~--------~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~ 154 (591)
T 2v1x_A 83 SDGFTLVICPLISLMEDQLMVLKQ--------LGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFM 154 (591)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHH--------HTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHH
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHh--------cCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHH
Confidence 456899999999999988877765 244688999999999999999888 5789999999982 2
Q ss_pred ---ccccccCCccEEEE
Q 002135 594 ---ELGIDVGHIDVTLH 607 (961)
Q Consensus 594 ---e~GIDIp~vd~VI~ 607 (961)
....+...+++||.
T Consensus 155 ~~l~~~~~~~~i~~iVi 171 (591)
T 2v1x_A 155 SRLEKAYEARRFTRIAV 171 (591)
T ss_dssp HHHHHHHHTTCEEEEEE
T ss_pred HHHHhhhhccCCcEEEE
Confidence 22234556777663
No 217
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=56.46 E-value=33 Score=46.23 Aligned_cols=40 Identities=18% Similarity=0.120 Sum_probs=27.6
Q ss_pred CCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccH
Q 002135 269 AGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTK 310 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~Ptr 310 (961)
.|.-+++.+|+|+|||...+--+.+... .+.+++|+.--.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~--~G~~vlyis~E~ 421 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEH 421 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEECTTS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHh--cCCeEEEEEcCC
Confidence 3567999999999999866554444433 256788877543
No 218
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=56.30 E-value=29 Score=40.25 Aligned_cols=75 Identities=5% Similarity=-0.126 Sum_probs=57.8
Q ss_pred CCCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEeccc-cc-----ccc
Q 002135 524 HGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNA-LE-----LGI 597 (961)
Q Consensus 524 ~g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~a-Le-----~GI 597 (961)
.+.++||.++++..++...+.++. .+..+..++|+.+..++..+...+..|..+++++|+- +. ..+
T Consensus 64 ~~g~~lvi~P~~aL~~q~~~~l~~--------~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l 135 (523)
T 1oyw_A 64 LNGLTVVVSPLISLMKDQVDQLQA--------NGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHL 135 (523)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHH--------TTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHH
T ss_pred hCCCEEEECChHHHHHHHHHHHHH--------cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHH
Confidence 346899999999999888777765 3456888999999999999999999999999999972 21 123
Q ss_pred ccCCccEEE
Q 002135 598 DVGHIDVTL 606 (961)
Q Consensus 598 DIp~vd~VI 606 (961)
+..++++||
T Consensus 136 ~~~~~~~vV 144 (523)
T 1oyw_A 136 AHWNPVLLA 144 (523)
T ss_dssp TTSCEEEEE
T ss_pred hhCCCCEEE
Confidence 335566666
No 219
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=55.59 E-value=30 Score=33.88 Aligned_cols=58 Identities=16% Similarity=0.068 Sum_probs=40.7
Q ss_pred CCCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEecc
Q 002135 524 HGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATN 591 (961)
Q Consensus 524 ~g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~ 591 (961)
.+.++|+.|+++..++.+++.++..... ..+..++|+.+......... ...+++|+|.
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~ 128 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPH------LKVVAVYGGTGYGKQKEALL----RGADAVVATP 128 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTT------SCEEEECSSSCSHHHHHHHH----HCCSEEEECH
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhc------ceEEEEECCCChHHHHHHhh----CCCCEEEECH
Confidence 3568999999999999988877664321 35778888876554433322 2468899996
No 220
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=55.46 E-value=23 Score=35.60 Aligned_cols=55 Identities=22% Similarity=0.300 Sum_probs=42.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhHhhCCCCccEEEEcCCCcHHHHHHHh----c-CCcEEEeCh
Q 002135 299 LSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLR----D-NARLLITNP 359 (961)
Q Consensus 299 ~~~~aLvl~PtraLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~~~r~~l~----~-~~~IlItTP 359 (961)
.+.++|+.++++.-+....+.+.+. ++.+..++|+.+..+|..+. + ..+|+|+|.
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~------~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~ 89 (212)
T 3eaq_A 30 SPDRAMVFTRTKAETEEIAQGLLRL------GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD 89 (212)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHH------TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHc------CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC
Confidence 4678999999999998888877664 36788899998888775432 2 368999993
No 221
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=54.83 E-value=30 Score=34.92 Aligned_cols=59 Identities=10% Similarity=-0.000 Sum_probs=43.2
Q ss_pred CCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEecc
Q 002135 525 GLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATN 591 (961)
Q Consensus 525 g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~ 591 (961)
+.++||.|+++..++.+++.++...... ....+..++||.+..++.... ...+|+|+|.
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp 150 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKM---EGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSP 150 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTS---TTCCEEEECTTSCHHHHHHHT-----TSCSEEEECH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccc---CCceEEEEeCCCCHHHHHHhc-----cCCCEEEECH
Confidence 4689999999999999888876643221 134688899998877654433 2578999987
No 222
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=54.38 E-value=6.7 Score=42.39 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=18.8
Q ss_pred HHhCCCcEEEEecCCchhHHHHH
Q 002135 266 ASLAGKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 266 ~il~G~~vIv~apTGSGKTla~~ 288 (961)
.+..+.++++.+|+|+|||....
T Consensus 42 ~l~~~~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 42 GICTGGHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp HHHHTCCEEEESCCCHHHHHHHH
T ss_pred HHHcCCeEEEECCCCCcHHHHHH
Confidence 34568899999999999997543
No 223
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=53.77 E-value=5.8 Score=41.78 Aligned_cols=21 Identities=29% Similarity=0.154 Sum_probs=17.6
Q ss_pred HhCCCcEEEEecCCchhHHHH
Q 002135 267 SLAGKNVVVATMTSSGKSLCY 287 (961)
Q Consensus 267 il~G~~vIv~apTGSGKTla~ 287 (961)
+..|..+++++|||||||...
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 456778999999999999754
No 224
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=53.60 E-value=8 Score=40.26 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=17.4
Q ss_pred hCCCcEEEEecCCchhHHHHH
Q 002135 268 LAGKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 268 l~G~~vIv~apTGSGKTla~~ 288 (961)
..+.++++.+|+|+|||..+.
T Consensus 27 ~~~~~vll~G~~GtGKt~la~ 47 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIAS 47 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHHH
T ss_pred CCCCCEEEECCCCCcHHHHHH
Confidence 356799999999999997653
No 225
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=53.58 E-value=5.8 Score=43.45 Aligned_cols=18 Identities=33% Similarity=0.274 Sum_probs=15.0
Q ss_pred CCcEEEEecCCchhHHHH
Q 002135 270 GKNVVVATMTSSGKSLCY 287 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~ 287 (961)
++.++|++|||||||...
T Consensus 40 ~~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLS 57 (339)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456899999999999753
No 226
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=53.16 E-value=40 Score=34.42 Aligned_cols=59 Identities=19% Similarity=0.158 Sum_probs=41.8
Q ss_pred CCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEecc
Q 002135 525 GLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATN 591 (961)
Q Consensus 525 g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~ 591 (961)
+.++||.|+++..++.+++.++..... ....+..++||.+..+.... + ....+|+|+|.
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~---~-~~~~~Ivv~Tp 158 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLN----TPLRSCVVYGGADTHSQIRE---V-QMGCHLLVATP 158 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTT----SSCCEEEECSSSCSHHHHHH---H-SSCCSEEEECH
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcc----CCceEEEEECCCCHHHHHHH---h-CCCCCEEEECH
Confidence 468999999999999998887764322 23457778888766543322 2 34578999997
No 227
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=52.94 E-value=20 Score=50.36 Aligned_cols=50 Identities=10% Similarity=0.121 Sum_probs=36.5
Q ss_pred cccHHHHHHHHhCCCCCCcHHHH-HHHH---HHhCCCcEEEEecCCchhHHHHHH
Q 002135 239 ALLDNTKSALKSTGISKLYSHQA-ESIM---ASLAGKNVVVATMTSSGKSLCYNL 289 (961)
Q Consensus 239 ~L~~~l~~~L~~~g~~~l~~~Q~-~ai~---~il~G~~vIv~apTGSGKTla~~L 289 (961)
.|...+.+.+++.|+ .+.+.|. +++. .+...+.+++++|||||||.++-.
T Consensus 872 ~l~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~ 925 (3245)
T 3vkg_A 872 QLRKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEV 925 (3245)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHH
Confidence 466777788888898 4666554 3333 234567799999999999999764
No 228
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=52.87 E-value=6.6 Score=43.64 Aligned_cols=20 Identities=30% Similarity=0.165 Sum_probs=16.9
Q ss_pred hCCCcEEEEecCCchhHHHH
Q 002135 268 LAGKNVVVATMTSSGKSLCY 287 (961)
Q Consensus 268 l~G~~vIv~apTGSGKTla~ 287 (961)
..|..+++++|||||||...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 46778999999999999754
No 229
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=52.73 E-value=44 Score=40.90 Aligned_cols=17 Identities=18% Similarity=0.356 Sum_probs=15.1
Q ss_pred CcEEEEecCCchhHHHH
Q 002135 271 KNVVVATMTSSGKSLCY 287 (961)
Q Consensus 271 ~~vIv~apTGSGKTla~ 287 (961)
+.+++.+|.|+|||+.+
T Consensus 239 ~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 57999999999999854
No 230
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=52.13 E-value=44 Score=32.70 Aligned_cols=60 Identities=13% Similarity=0.088 Sum_probs=42.5
Q ss_pred CCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEecc
Q 002135 525 GLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATN 591 (961)
Q Consensus 525 g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~ 591 (961)
+.++|+.++++..++.+++.+++..... ....+..++|+.+..+.... + .+..+|+|+|.
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~ 130 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHM---GGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATP 130 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTS---SSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECH
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhc---CCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCH
Confidence 4589999999999999888776643321 13467888998876544322 2 35678999997
No 231
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=51.83 E-value=5.5 Score=43.19 Aligned_cols=18 Identities=28% Similarity=0.224 Sum_probs=14.4
Q ss_pred CCcEEEEecCCchhHHHH
Q 002135 270 GKNVVVATMTSSGKSLCY 287 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~ 287 (961)
++-++|++|||||||..+
T Consensus 3 ~~~i~i~GptgsGKt~la 20 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTS 20 (322)
T ss_dssp CEEEEEECCTTSCHHHHH
T ss_pred CcEEEEECCCcCCHHHHH
Confidence 345789999999999754
No 232
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=51.55 E-value=13 Score=40.81 Aligned_cols=20 Identities=30% Similarity=0.390 Sum_probs=17.0
Q ss_pred CCCcEEEEecCCchhHHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~ 288 (961)
.+.++++.+|+|+|||..+.
T Consensus 50 ~~~~vll~GppGtGKT~la~ 69 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAE 69 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 45689999999999998654
No 233
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=51.31 E-value=15 Score=36.91 Aligned_cols=63 Identities=11% Similarity=0.017 Sum_probs=41.6
Q ss_pred CCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEecc
Q 002135 525 GLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATN 591 (961)
Q Consensus 525 g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~ 591 (961)
+.++||.++++..++.+++.+++............+..++|+.+..+..+ .+ .+..+|+|+|.
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~Iiv~Tp 134 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE---KL-NVQPHIVIGTP 134 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTC---CC-SSCCSEEEECH
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHH---Hc-CCCCCEEEeCH
Confidence 46899999999999999888877554322222446778888875443211 11 23567888885
No 234
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=51.11 E-value=5.9 Score=40.04 Aligned_cols=18 Identities=28% Similarity=0.318 Sum_probs=15.2
Q ss_pred CCCcEEEEecCCchhHHH
Q 002135 269 AGKNVVVATMTSSGKSLC 286 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla 286 (961)
.|+-+++++|||+|||..
T Consensus 33 ~g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSET 50 (205)
T ss_dssp TTEEEEEECCCTTTTHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 456799999999999864
No 235
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=51.11 E-value=8.1 Score=38.40 Aligned_cols=20 Identities=15% Similarity=0.135 Sum_probs=17.4
Q ss_pred CCCcEEEEecCCchhHHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~ 288 (961)
.++.+++++++|||||....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 57889999999999998654
No 236
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=50.62 E-value=8.2 Score=38.75 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=16.0
Q ss_pred CCCcEEEEecCCchhHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCY 287 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~ 287 (961)
.|+-+++++|+|||||...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4677899999999999754
No 237
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=50.56 E-value=8.3 Score=37.55 Aligned_cols=20 Identities=15% Similarity=0.162 Sum_probs=16.8
Q ss_pred CCcEEEEecCCchhHHHHHH
Q 002135 270 GKNVVVATMTSSGKSLCYNL 289 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~~L 289 (961)
++.+++++++|||||.....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~ 24 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQ 24 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 56899999999999986543
No 238
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=50.35 E-value=7.9 Score=44.84 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=21.4
Q ss_pred HHHHHHHhCCCcEEEEecCCchhHHHH
Q 002135 261 AESIMASLAGKNVVVATMTSSGKSLCY 287 (961)
Q Consensus 261 ~~ai~~il~G~~vIv~apTGSGKTla~ 287 (961)
..++.++..|.++++.+|+|+|||..+
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 344445668899999999999999854
No 239
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=49.92 E-value=7.7 Score=38.72 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=15.6
Q ss_pred CCCcEEEEecCCchhHHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~ 288 (961)
.|+-+++++|+|||||...-
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~ 22 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLK 22 (198)
T ss_dssp --CCEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 47789999999999997543
No 240
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=49.51 E-value=6.9 Score=37.81 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=16.0
Q ss_pred CCcEEEEecCCchhHHHHH
Q 002135 270 GKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~~ 288 (961)
++.++++++.|||||...-
T Consensus 3 ~~~i~l~G~~GsGKST~a~ 21 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVR 21 (178)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 5678999999999998653
No 241
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=48.79 E-value=7 Score=42.31 Aligned_cols=16 Identities=25% Similarity=0.266 Sum_probs=13.5
Q ss_pred cEEEEecCCchhHHHH
Q 002135 272 NVVVATMTSSGKSLCY 287 (961)
Q Consensus 272 ~vIv~apTGSGKTla~ 287 (961)
-++|++|||||||..+
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 4788999999999754
No 242
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=48.78 E-value=12 Score=40.74 Aligned_cols=42 Identities=14% Similarity=-0.025 Sum_probs=29.9
Q ss_pred cEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHHHH
Q 002135 272 NVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALA 313 (961)
Q Consensus 272 ~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~PtraLa 313 (961)
-+.+.+|.|+|||...+-.+.+.....++.+++|+..-.++.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~ 71 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGIT 71 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhh
Confidence 588999999999976555444444333467899998765553
No 243
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=48.70 E-value=7.8 Score=38.35 Aligned_cols=20 Identities=20% Similarity=0.205 Sum_probs=17.0
Q ss_pred hCCCcEEEEecCCchhHHHH
Q 002135 268 LAGKNVVVATMTSSGKSLCY 287 (961)
Q Consensus 268 l~G~~vIv~apTGSGKTla~ 287 (961)
..|.-+++++|+|||||...
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 46788999999999999754
No 244
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=47.43 E-value=30 Score=36.48 Aligned_cols=44 Identities=14% Similarity=0.150 Sum_probs=32.0
Q ss_pred HHHHHHHHhCCCCCCcHHHH-HHHHHHhCCC-----cEEEEecCCchhHHHHH
Q 002135 242 DNTKSALKSTGISKLYSHQA-ESIMASLAGK-----NVVVATMTSSGKSLCYN 288 (961)
Q Consensus 242 ~~l~~~L~~~g~~~l~~~Q~-~ai~~il~G~-----~vIv~apTGSGKTla~~ 288 (961)
..+.+.|+..|+. +.+. .++...+.|+ .+++.+|.|+|||+.+.
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 5677888888875 5453 3455666654 49999999999998654
No 245
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=47.18 E-value=23 Score=37.31 Aligned_cols=20 Identities=25% Similarity=0.262 Sum_probs=17.0
Q ss_pred CCCcEEEEecCCchhHHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~ 288 (961)
.+.++++.+|+|+|||....
T Consensus 49 ~~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 46789999999999998654
No 246
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=46.83 E-value=8.5 Score=37.75 Aligned_cols=20 Identities=20% Similarity=0.398 Sum_probs=16.8
Q ss_pred CCCcEEEEecCCchhHHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~ 288 (961)
.+..++++++.|||||.+.-
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAE 28 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46789999999999998653
No 247
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=46.52 E-value=18 Score=39.50 Aligned_cols=20 Identities=25% Similarity=0.331 Sum_probs=16.7
Q ss_pred CCcEEEEecCCchhHHHHHH
Q 002135 270 GKNVVVATMTSSGKSLCYNL 289 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~~L 289 (961)
++++++.+|+|+|||..+..
T Consensus 70 ~~~vLl~GppGtGKT~la~~ 89 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMG 89 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 35899999999999987543
No 248
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=46.18 E-value=13 Score=40.93 Aligned_cols=26 Identities=23% Similarity=0.403 Sum_probs=20.0
Q ss_pred HHHHHHhCCCc--EEEEecCCchhHHHH
Q 002135 262 ESIMASLAGKN--VVVATMTSSGKSLCY 287 (961)
Q Consensus 262 ~ai~~il~G~~--vIv~apTGSGKTla~ 287 (961)
..++.+++|.| ++.-++||||||.+.
T Consensus 95 plv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 95 DVVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 35566788987 556789999999764
No 249
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=45.85 E-value=11 Score=37.25 Aligned_cols=19 Identities=11% Similarity=0.231 Sum_probs=16.4
Q ss_pred CCCcEEEEecCCchhHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCY 287 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~ 287 (961)
.|.-+.+++|+|||||...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 5778899999999999854
No 250
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=45.77 E-value=9.4 Score=38.08 Aligned_cols=20 Identities=20% Similarity=0.092 Sum_probs=17.1
Q ss_pred hCCCcEEEEecCCchhHHHH
Q 002135 268 LAGKNVVVATMTSSGKSLCY 287 (961)
Q Consensus 268 l~G~~vIv~apTGSGKTla~ 287 (961)
..|+-+++++|+|||||...
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHH
Confidence 46788999999999999754
No 251
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=45.72 E-value=36 Score=34.13 Aligned_cols=59 Identities=12% Similarity=-0.055 Sum_probs=37.5
Q ss_pred CCCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEecc
Q 002135 524 HGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATN 591 (961)
Q Consensus 524 ~g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~ 591 (961)
.+.++|+.++++..++.+.+.++... .....+..++||.+..++... +. ...+|+|+|.
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp 151 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYS-----YKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATP 151 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHC-----CTTCCEEEECC------CHHH---HH-SCCSEEEECH
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhc-----ccCceEEEEECCCChHHHHHH---hc-CCCCEEEECH
Confidence 56789999999999999888776632 123457778888765544332 22 3478999996
No 252
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=45.65 E-value=11 Score=37.78 Aligned_cols=20 Identities=20% Similarity=0.224 Sum_probs=16.9
Q ss_pred hCCCcEEEEecCCchhHHHH
Q 002135 268 LAGKNVVVATMTSSGKSLCY 287 (961)
Q Consensus 268 l~G~~vIv~apTGSGKTla~ 287 (961)
..|+-+++++|+|+|||...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHH
Confidence 36788999999999999743
No 253
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=45.48 E-value=89 Score=36.06 Aligned_cols=79 Identities=18% Similarity=0.167 Sum_probs=53.9
Q ss_pred cCCchhHHHHHHHHHHHHhc-CCCCeEEEEcccHHHHHHHHHHHHHhHhhCCCCccEEEEcCCCcHHHHHHHh-----cC
Q 002135 278 MTSSGKSLCYNLPVLEALSH-DLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLR-----DN 351 (961)
Q Consensus 278 pTGSGKTla~~Lpil~~l~~-~~~~~aLvl~PtraLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~~~r~~l~-----~~ 351 (961)
+....+....+-.+...+.. ..+.++||.++++.-+....+.+.+... .++.+..++|+.+..+|..+. ..
T Consensus 316 ~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~---~~~~v~~~h~~~~~~~R~~~~~~f~~g~ 392 (563)
T 3i5x_A 316 EKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK---KDLPILEFHGKITQNKRTSLVKRFKKDE 392 (563)
T ss_dssp SSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHT---TTSCEEEESTTSCHHHHHHHHHHHHHCS
T ss_pred chhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhcc---CCceEEEecCCCCHHHHHHHHHHHhcCC
Confidence 33334433333334444433 4567999999999999988888877543 246788999999888775432 34
Q ss_pred CcEEEeCh
Q 002135 352 ARLLITNP 359 (961)
Q Consensus 352 ~~IlItTP 359 (961)
.+|+|+|.
T Consensus 393 ~~vLvaT~ 400 (563)
T 3i5x_A 393 SGILVCTD 400 (563)
T ss_dssp SEEEEECG
T ss_pred CCEEEEcc
Confidence 78999995
No 254
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=45.43 E-value=21 Score=36.24 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=30.5
Q ss_pred HHHHHHHHhCCCCCCcHHHHHHHHHHhCC----CcEEEEecCCchhHHHH
Q 002135 242 DNTKSALKSTGISKLYSHQAESIMASLAG----KNVVVATMTSSGKSLCY 287 (961)
Q Consensus 242 ~~l~~~L~~~g~~~l~~~Q~~ai~~il~G----~~vIv~apTGSGKTla~ 287 (961)
..+.+.|+-.|+ .+-.. ..++...+.+ +.+++.+|.|+|||..+
T Consensus 28 ~~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 28 RPIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 566777776665 34444 5556666555 35999999999999754
No 255
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=45.41 E-value=11 Score=36.55 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=17.5
Q ss_pred hCCCcEEEEecCCchhHHHHH
Q 002135 268 LAGKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 268 l~G~~vIv~apTGSGKTla~~ 288 (961)
..++.+++++++|||||....
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHH
Confidence 356789999999999998654
No 256
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=45.40 E-value=14 Score=39.08 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=16.4
Q ss_pred CCcEEEEecCCchhHHHHH
Q 002135 270 GKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~~ 288 (961)
++.+++.+|+|+|||..+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 5789999999999998653
No 257
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=44.56 E-value=18 Score=36.35 Aligned_cols=39 Identities=21% Similarity=0.001 Sum_probs=27.0
Q ss_pred CCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEccc
Q 002135 269 AGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPT 309 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~Pt 309 (961)
.|+=.++.+|.|||||.-.+-.+-..... +.+++++.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~--~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIA--QYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHT--TCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEEccc
Confidence 46678899999999995543333333332 5788888886
No 258
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=44.56 E-value=17 Score=38.99 Aligned_cols=37 Identities=19% Similarity=0.327 Sum_probs=22.8
Q ss_pred CCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEc
Q 002135 269 AGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMF 307 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~ 307 (961)
.|.-+.+++|+|||||...- .+..+....++++++..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~--~Lagll~~~~g~V~l~g 137 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIA--KLGRYYQNLGKKVMFCA 137 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHH--HHHHHHHTTTCCEEEEC
T ss_pred CCeEEEEECCCCCcHHHHHH--HHHHHHHhcCCEEEEEe
Confidence 35678899999999997543 33333333345555543
No 259
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=44.48 E-value=31 Score=34.39 Aligned_cols=58 Identities=10% Similarity=0.023 Sum_probs=35.5
Q ss_pred CCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEecc
Q 002135 525 GLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATN 591 (961)
Q Consensus 525 g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~ 591 (961)
+.++|+.++++..++.+++.++.... .....+..++|+.+..++... +. ..+|+|+|.
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp 139 (224)
T 1qde_A 82 APQALMLAPTRELALQIQKVVMALAF----HMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTP 139 (224)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTT----TSCCCEEEECC-------------CT--TCSEEEECH
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhc----ccCceEEEEeCCcchHHHHhc---CC--CCCEEEECH
Confidence 46899999999999998887765432 234567888998765544332 22 267888886
No 260
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=44.45 E-value=12 Score=35.74 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=15.7
Q ss_pred CCcEEEEecCCchhHHHH
Q 002135 270 GKNVVVATMTSSGKSLCY 287 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~ 287 (961)
+..++++++.|||||...
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 568999999999999854
No 261
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=44.31 E-value=66 Score=35.60 Aligned_cols=73 Identities=11% Similarity=0.125 Sum_probs=46.5
Q ss_pred CCchhHHHHHHHHHHHHh-cCCCCeEEEEcccHHHHHHHHHHHHHhHhhCCCCccEEEEcC--------CCcHHHHHHH-
Q 002135 279 TSSGKSLCYNLPVLEALS-HDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDG--------DTTQKDRMWL- 348 (961)
Q Consensus 279 TGSGKTla~~Lpil~~l~-~~~~~~aLvl~PtraLa~qq~~~l~~l~~~~~~~i~v~~~~G--------d~~~~~r~~l- 348 (961)
..++|... +.-++.... ..++.++|+.++++.-+....+.+... ++.+..++| +.+..+|..+
T Consensus 340 ~~~~k~~~-l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~------~~~~~~~~g~~~~~~~~~~~~~~r~~~~ 412 (494)
T 1wp9_A 340 LDHPKMDK-LKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKD------GIKAKRFVGQASKENDRGLSQREQKLIL 412 (494)
T ss_dssp CSCHHHHH-HHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHT------TCCEEEECCSSCC-------CCHHHHHH
T ss_pred CCChHHHH-HHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHc------CCCcEEEeccccccccccCCHHHHHHHH
Confidence 45666543 333443332 245789999999999888887777664 367888898 5555555432
Q ss_pred ---h-cCCcEEEeC
Q 002135 349 ---R-DNARLLITN 358 (961)
Q Consensus 349 ---~-~~~~IlItT 358 (961)
. ...+|+|+|
T Consensus 413 ~~F~~~~~~vLv~T 426 (494)
T 1wp9_A 413 DEFARGEFNVLVAT 426 (494)
T ss_dssp HHHHHTSCSEEEEC
T ss_pred HHHhcCCceEEEEC
Confidence 2 347899999
No 262
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=44.15 E-value=11 Score=36.84 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=17.2
Q ss_pred HhCCCcEEEEecCCchhHHHH
Q 002135 267 SLAGKNVVVATMTSSGKSLCY 287 (961)
Q Consensus 267 il~G~~vIv~apTGSGKTla~ 287 (961)
+..|+.+++++|.|||||...
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHH
Confidence 346778999999999999853
No 263
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=43.70 E-value=9.2 Score=36.32 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=14.3
Q ss_pred cEEEEecCCchhHHHHH
Q 002135 272 NVVVATMTSSGKSLCYN 288 (961)
Q Consensus 272 ~vIv~apTGSGKTla~~ 288 (961)
.+++++++|||||....
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998654
No 264
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=43.70 E-value=12 Score=40.18 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=17.0
Q ss_pred CCCcEEEEecCCchhHHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~ 288 (961)
.+.++++.++||+|||..+.
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr 43 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVAR 43 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHH
T ss_pred CCCcEEEECCCCchHHHHHH
Confidence 46789999999999998653
No 265
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=43.68 E-value=11 Score=39.25 Aligned_cols=16 Identities=25% Similarity=0.069 Sum_probs=13.5
Q ss_pred cEEEEecCCchhHHHH
Q 002135 272 NVVVATMTSSGKSLCY 287 (961)
Q Consensus 272 ~vIv~apTGSGKTla~ 287 (961)
-+++++|||||||..+
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4689999999999754
No 266
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=43.31 E-value=15 Score=39.91 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=20.0
Q ss_pred HHHHHHhCCCc--EEEEecCCchhHHHH
Q 002135 262 ESIMASLAGKN--VVVATMTSSGKSLCY 287 (961)
Q Consensus 262 ~ai~~il~G~~--vIv~apTGSGKTla~ 287 (961)
..++.+++|.| ++.-++||||||.+.
T Consensus 68 plv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 68 KIVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hhHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 34556778987 566789999999874
No 267
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=43.20 E-value=28 Score=43.82 Aligned_cols=87 Identities=9% Similarity=0.158 Sum_probs=50.6
Q ss_pred hHHHHHHHHccCCCCCceEEeeecCCcccccccCCccccHHHHHHHHhCCCCCCcH----HHHHHHHHHh---CCCcEEE
Q 002135 203 PLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYS----HQAESIMASL---AGKNVVV 275 (961)
Q Consensus 203 ~~~~~~~lr~~~~~~~~iv~~~~~p~~~~~f~~l~~~L~~~l~~~L~~~g~~~l~~----~Q~~ai~~il---~G~~vIv 275 (961)
.+.++..||..+.....-+..-.+=--..+|..+|.--+++..+..+......+-| +=..|...++ ..+.+||
T Consensus 70 E~svL~nL~~Ry~~~~IYTy~G~iLIaVNPyk~lp~iY~~~~~~~Y~g~~~~~lpPHIfaiA~~AY~~M~~~~~nQsIii 149 (1052)
T 4anj_A 70 EATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIV 149 (1052)
T ss_dssp HHHHHHHHHHHHHTTCCEEEETTEEEEECCSSCCTTTTSHHHHHHHTTCCBTTBCSCHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHHHcCCCcEEeECCEEEEECCCCCccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHHhCCCceEEE
Confidence 46788888887643222122111111122355665334677777776544444434 3445555554 3457999
Q ss_pred EecCCchhHHHHHH
Q 002135 276 ATMTSSGKSLCYNL 289 (961)
Q Consensus 276 ~apTGSGKTla~~L 289 (961)
++.+|||||.+.-+
T Consensus 150 SGESGAGKTestK~ 163 (1052)
T 4anj_A 150 SGESGAGKTENTKF 163 (1052)
T ss_dssp ECSTTSSHHHHHHH
T ss_pred ecCCCCCHHHHHHH
Confidence 99999999998754
No 268
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=42.98 E-value=10 Score=36.87 Aligned_cols=20 Identities=25% Similarity=0.295 Sum_probs=16.0
Q ss_pred CCCcEEEEecCCchhHHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~ 288 (961)
.+..++++++.|||||...-
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~ 21 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQ 21 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 35678999999999998643
No 269
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=42.80 E-value=14 Score=37.48 Aligned_cols=21 Identities=14% Similarity=0.014 Sum_probs=16.8
Q ss_pred HhCCCcEEEEecCCchhHHHH
Q 002135 267 SLAGKNVVVATMTSSGKSLCY 287 (961)
Q Consensus 267 il~G~~vIv~apTGSGKTla~ 287 (961)
+..|+-+.+++|+|||||...
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 346888999999999999753
No 270
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=42.73 E-value=13 Score=36.42 Aligned_cols=18 Identities=22% Similarity=0.408 Sum_probs=14.7
Q ss_pred CCcEEEEecCCchhHHHH
Q 002135 270 GKNVVVATMTSSGKSLCY 287 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~ 287 (961)
|+-+.+++|+|||||...
T Consensus 1 ~~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCCEEEESSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 356789999999999754
No 271
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=42.54 E-value=18 Score=37.39 Aligned_cols=40 Identities=23% Similarity=0.024 Sum_probs=28.6
Q ss_pred CCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccH
Q 002135 269 AGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTK 310 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~Ptr 310 (961)
.|+=.+++++.|||||...+--+..... .+.+++++-|.+
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~--~g~kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQI--AQYKCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHT--TTCCEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHH--CCCeEEEEeecC
Confidence 4666778888899999776554444433 467889988875
No 272
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=42.52 E-value=16 Score=40.95 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=19.9
Q ss_pred HHHHHHhCCCc--EEEEecCCchhHHHH
Q 002135 262 ESIMASLAGKN--VVVATMTSSGKSLCY 287 (961)
Q Consensus 262 ~ai~~il~G~~--vIv~apTGSGKTla~ 287 (961)
..+..+++|.| ++.-+.||||||.+.
T Consensus 145 plV~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 145 PLVQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhcCCceeEEeecCCCCCCCeEe
Confidence 34566788987 556789999999874
No 273
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=42.20 E-value=9.9 Score=40.62 Aligned_cols=20 Identities=25% Similarity=0.283 Sum_probs=17.0
Q ss_pred CCCcEEEEecCCchhHHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~ 288 (961)
.++.+++.+|+|+|||+.+-
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHH
Confidence 46789999999999998654
No 274
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=42.04 E-value=17 Score=39.93 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=20.0
Q ss_pred HHHHHHhCCCc--EEEEecCCchhHHHH
Q 002135 262 ESIMASLAGKN--VVVATMTSSGKSLCY 287 (961)
Q Consensus 262 ~ai~~il~G~~--vIv~apTGSGKTla~ 287 (961)
..++.+++|.| ++.-++||||||.+.
T Consensus 68 plv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 68 PIIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHcCCccceeeecCCCCCCCeEE
Confidence 35566788987 556789999999764
No 275
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=42.01 E-value=17 Score=40.29 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=19.6
Q ss_pred HHHHHHhCCCc--EEEEecCCchhHHHH
Q 002135 262 ESIMASLAGKN--VVVATMTSSGKSLCY 287 (961)
Q Consensus 262 ~ai~~il~G~~--vIv~apTGSGKTla~ 287 (961)
..++.+++|.| ++..++||||||.+.
T Consensus 92 plv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 92 PLVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 34556788987 556789999999764
No 276
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=41.86 E-value=17 Score=40.00 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=20.0
Q ss_pred HHHHHHhCCCc--EEEEecCCchhHHHH
Q 002135 262 ESIMASLAGKN--VVVATMTSSGKSLCY 287 (961)
Q Consensus 262 ~ai~~il~G~~--vIv~apTGSGKTla~ 287 (961)
..++.+++|.| ++.-++||||||.+.
T Consensus 83 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 83 NILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 35566788987 456689999999874
No 277
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=41.65 E-value=10 Score=39.00 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=16.1
Q ss_pred CCcEEEEecCCchhHHHHH
Q 002135 270 GKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~~ 288 (961)
.+++++.+|+|+|||..+.
T Consensus 39 ~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999998654
No 278
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=41.62 E-value=17 Score=39.99 Aligned_cols=26 Identities=23% Similarity=0.403 Sum_probs=19.7
Q ss_pred HHHHHHhCCCc--EEEEecCCchhHHHH
Q 002135 262 ESIMASLAGKN--VVVATMTSSGKSLCY 287 (961)
Q Consensus 262 ~ai~~il~G~~--vIv~apTGSGKTla~ 287 (961)
..++.+++|.| ++.-++||||||.+.
T Consensus 94 ~lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 94 DVVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhCCCceEEEEECCCCCCCceEe
Confidence 35566788987 455689999999764
No 279
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=41.51 E-value=58 Score=34.74 Aligned_cols=57 Identities=21% Similarity=0.257 Sum_probs=44.1
Q ss_pred cCCCCeEEEEcccHHHHHHHHHHHHHhHhhCCCCccEEEEcCCCcHHHHHHHh-----cCCcEEEeCh
Q 002135 297 HDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLR-----DNARLLITNP 359 (961)
Q Consensus 297 ~~~~~~aLvl~PtraLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~~~r~~l~-----~~~~IlItTP 359 (961)
...+.++|+.++++.-+....+.+++. +..+..++|+.+..+|..+. ...+|+|+|.
T Consensus 235 ~~~~~~~lvf~~~~~~~~~l~~~L~~~------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~ 296 (367)
T 1hv8_A 235 KNKEFYGLVFCKTKRDTKELASMLRDI------GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD 296 (367)
T ss_dssp CSTTCCEEEECSSHHHHHHHHHHHHHT------TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT
T ss_pred hcCCCcEEEEECCHHHHHHHHHHHHhc------CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 356778999999999998888877764 36788999998887775432 2478999994
No 280
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=41.40 E-value=14 Score=40.42 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=19.2
Q ss_pred HHHHHhCCCc--EEEEecCCchhHHHH
Q 002135 263 SIMASLAGKN--VVVATMTSSGKSLCY 287 (961)
Q Consensus 263 ai~~il~G~~--vIv~apTGSGKTla~ 287 (961)
.++.+++|.| ++..++||||||.+.
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 4556678887 556689999999874
No 281
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=41.35 E-value=1.1e+02 Score=35.52 Aligned_cols=59 Identities=24% Similarity=0.252 Sum_probs=46.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHHhHhhCCCCccEEEEcCCCcHHHHHHHh-----cCCcEEEeCh
Q 002135 298 DLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLR-----DNARLLITNP 359 (961)
Q Consensus 298 ~~~~~aLvl~PtraLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~~~r~~l~-----~~~~IlItTP 359 (961)
.++.++||.++++.-+....+.+.+... .++.+..++|+.+..+|..+. ...+|+|+|.
T Consensus 286 ~~~~~~iVF~~t~~~~~~l~~~L~~~~~---~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~ 349 (579)
T 3sqw_A 286 DSNYKAIIFAPTVKFTSFLCSILKNEFK---KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD 349 (579)
T ss_dssp TTCCEEEEECSSHHHHHHHHHHHHHHHT---TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG
T ss_pred CCCCcEEEECCcHHHHHHHHHHHHHhhc---CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc
Confidence 4567999999999999998888877543 246788999999887775432 3478999995
No 282
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=41.09 E-value=17 Score=40.75 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=20.8
Q ss_pred HHHHHHhCCCc--EEEEecCCchhHHHH
Q 002135 262 ESIMASLAGKN--VVVATMTSSGKSLCY 287 (961)
Q Consensus 262 ~ai~~il~G~~--vIv~apTGSGKTla~ 287 (961)
..+..+++|.| ++..++||||||.+.
T Consensus 131 ~lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 131 QLVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHHhCCcceEEEEECCCCCCCceEe
Confidence 36777889987 455689999999875
No 283
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=41.07 E-value=17 Score=40.11 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=20.0
Q ss_pred HHHHHHhCCCc--EEEEecCCchhHHHH
Q 002135 262 ESIMASLAGKN--VVVATMTSSGKSLCY 287 (961)
Q Consensus 262 ~ai~~il~G~~--vIv~apTGSGKTla~ 287 (961)
..++.++.|.| ++.-++||||||.+.
T Consensus 79 plv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 79 PILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred HhHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 45566788987 556789999999764
No 284
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=41.00 E-value=17 Score=39.91 Aligned_cols=26 Identities=31% Similarity=0.307 Sum_probs=19.5
Q ss_pred HHHHHHhCCCc--EEEEecCCchhHHHH
Q 002135 262 ESIMASLAGKN--VVVATMTSSGKSLCY 287 (961)
Q Consensus 262 ~ai~~il~G~~--vIv~apTGSGKTla~ 287 (961)
..++.+++|.| ++.-++||||||.+.
T Consensus 80 plv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 80 PLIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 34456778987 556789999999764
No 285
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=40.95 E-value=17 Score=39.62 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=20.9
Q ss_pred HHHHHHhCCCc--EEEEecCCchhHHHH
Q 002135 262 ESIMASLAGKN--VVVATMTSSGKSLCY 287 (961)
Q Consensus 262 ~ai~~il~G~~--vIv~apTGSGKTla~ 287 (961)
..+..+++|.| ++..++||||||.+.
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 46777889987 556789999999764
No 286
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=40.77 E-value=15 Score=36.59 Aligned_cols=17 Identities=12% Similarity=0.106 Sum_probs=14.6
Q ss_pred cEEEEecCCchhHHHHH
Q 002135 272 NVVVATMTSSGKSLCYN 288 (961)
Q Consensus 272 ~vIv~apTGSGKTla~~ 288 (961)
.+++.+|+|+|||....
T Consensus 47 ~~ll~G~~G~GKT~l~~ 63 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIAR 63 (250)
T ss_dssp EEEEECSTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68999999999997643
No 287
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=40.72 E-value=17 Score=40.12 Aligned_cols=26 Identities=35% Similarity=0.372 Sum_probs=19.7
Q ss_pred HHHHHHhCCCc--EEEEecCCchhHHHH
Q 002135 262 ESIMASLAGKN--VVVATMTSSGKSLCY 287 (961)
Q Consensus 262 ~ai~~il~G~~--vIv~apTGSGKTla~ 287 (961)
..++.+++|.| ++.-++||||||.+.
T Consensus 75 plv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 75 SIVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHHhCCCceEEEeecCCCCCCceEE
Confidence 34556778987 556789999999874
No 288
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=40.67 E-value=12 Score=37.24 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=13.9
Q ss_pred CcEEEEecCCchhHHH
Q 002135 271 KNVVVATMTSSGKSLC 286 (961)
Q Consensus 271 ~~vIv~apTGSGKTla 286 (961)
+-+|+++|+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5689999999999974
No 289
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=40.46 E-value=18 Score=35.79 Aligned_cols=42 Identities=26% Similarity=0.357 Sum_probs=23.9
Q ss_pred EEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHHHHHHHHHHH
Q 002135 273 VVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRAL 320 (961)
Q Consensus 273 vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~PtraLa~qq~~~l 320 (961)
++|.+++|||||.-+. .+... +..++|+..-...-.+..+++
T Consensus 2 ilV~Gg~~SGKS~~A~-----~la~~-~~~~~yiaT~~~~d~e~~~rI 43 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAE-----ALIGD-APQVLYIATSQILDDEMAARI 43 (180)
T ss_dssp EEEEECTTSSHHHHHH-----HHHCS-CSSEEEEECCCC------CHH
T ss_pred EEEECCCCCcHHHHHH-----HHHhc-CCCeEEEecCCCCCHHHHHHH
Confidence 6899999999996432 22223 456888887554433333333
No 290
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=40.42 E-value=17 Score=39.79 Aligned_cols=25 Identities=32% Similarity=0.300 Sum_probs=19.2
Q ss_pred HHHHHhCCCc--EEEEecCCchhHHHH
Q 002135 263 SIMASLAGKN--VVVATMTSSGKSLCY 287 (961)
Q Consensus 263 ai~~il~G~~--vIv~apTGSGKTla~ 287 (961)
.++.+++|.| ++.-++||||||.+.
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 4556778987 556689999999874
No 291
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=40.31 E-value=17 Score=40.03 Aligned_cols=25 Identities=32% Similarity=0.349 Sum_probs=19.1
Q ss_pred HHHHHhCCCc--EEEEecCCchhHHHH
Q 002135 263 SIMASLAGKN--VVVATMTSSGKSLCY 287 (961)
Q Consensus 263 ai~~il~G~~--vIv~apTGSGKTla~ 287 (961)
.+..+++|.| ++..++||||||.+.
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 72 TVDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCcceEEEECCCCCCcceEe
Confidence 4456778987 556789999999764
No 292
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=40.11 E-value=18 Score=40.03 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=19.6
Q ss_pred HHHHHHhCCCc--EEEEecCCchhHHHH
Q 002135 262 ESIMASLAGKN--VVVATMTSSGKSLCY 287 (961)
Q Consensus 262 ~ai~~il~G~~--vIv~apTGSGKTla~ 287 (961)
..+..+++|.| ++..++||||||.+.
T Consensus 80 plv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 80 EMLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 34556788987 556789999999764
No 293
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=39.96 E-value=13 Score=40.33 Aligned_cols=17 Identities=18% Similarity=0.163 Sum_probs=14.3
Q ss_pred CcEEEEecCCchhHHHH
Q 002135 271 KNVVVATMTSSGKSLCY 287 (961)
Q Consensus 271 ~~vIv~apTGSGKTla~ 287 (961)
+.+++++|||||||...
T Consensus 6 ~~i~i~GptGsGKTtla 22 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 36889999999999754
No 294
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=39.81 E-value=17 Score=37.86 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=18.5
Q ss_pred hCCCcEEEEecCCchhHHHHHH
Q 002135 268 LAGKNVVVATMTSSGKSLCYNL 289 (961)
Q Consensus 268 l~G~~vIv~apTGSGKTla~~L 289 (961)
+.|+.++++++.|||||...-+
T Consensus 46 l~g~~i~l~G~~GsGKSTl~~~ 67 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTVGKI 67 (250)
T ss_dssp HTTCCEEEECSTTSCHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHH
Confidence 3599999999999999986543
No 295
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=39.76 E-value=12 Score=41.08 Aligned_cols=16 Identities=31% Similarity=0.295 Sum_probs=13.8
Q ss_pred cEEEEecCCchhHHHH
Q 002135 272 NVVVATMTSSGKSLCY 287 (961)
Q Consensus 272 ~vIv~apTGSGKTla~ 287 (961)
-++|++|||||||...
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 5789999999999754
No 296
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=39.60 E-value=11 Score=36.36 Aligned_cols=20 Identities=25% Similarity=0.228 Sum_probs=16.3
Q ss_pred CCCcEEEEecCCchhHHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~ 288 (961)
.|..++++++.|||||...-
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~ 26 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVAS 26 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 35678999999999998653
No 297
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=39.57 E-value=11 Score=38.84 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=15.9
Q ss_pred CCcEEEEecCCchhHHHHH
Q 002135 270 GKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~~ 288 (961)
.+.+++.+|+|+|||..+.
T Consensus 45 ~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 4579999999999997653
No 298
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=39.56 E-value=18 Score=39.89 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=19.3
Q ss_pred HHHHHhCCCc--EEEEecCCchhHHHH
Q 002135 263 SIMASLAGKN--VVVATMTSSGKSLCY 287 (961)
Q Consensus 263 ai~~il~G~~--vIv~apTGSGKTla~ 287 (961)
.++.+++|.| ++.-++||||||.+.
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeee
Confidence 4556778987 556689999999864
No 299
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=39.37 E-value=13 Score=39.41 Aligned_cols=18 Identities=17% Similarity=0.087 Sum_probs=15.5
Q ss_pred CcEEEEecCCchhHHHHH
Q 002135 271 KNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 271 ~~vIv~apTGSGKTla~~ 288 (961)
.++++.+|+|+|||..+-
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 379999999999998654
No 300
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=39.23 E-value=16 Score=36.44 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=17.0
Q ss_pred HHhCCCcEEEEecCCchhHHHH
Q 002135 266 ASLAGKNVVVATMTSSGKSLCY 287 (961)
Q Consensus 266 ~il~G~~vIv~apTGSGKTla~ 287 (961)
.+..|+-+.+.+|+|||||...
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 5678899999999999999754
No 301
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=39.17 E-value=12 Score=41.87 Aligned_cols=16 Identities=38% Similarity=0.355 Sum_probs=13.3
Q ss_pred cEEEEecCCchhHHHH
Q 002135 272 NVVVATMTSSGKSLCY 287 (961)
Q Consensus 272 ~vIv~apTGSGKTla~ 287 (961)
-++|++|||||||...
T Consensus 4 ~i~i~GptgsGKttla 19 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEEECSSSSHHHHH
T ss_pred EEEEECcchhhHHHHH
Confidence 4789999999999653
No 302
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=39.12 E-value=57 Score=31.83 Aligned_cols=70 Identities=26% Similarity=0.247 Sum_probs=41.6
Q ss_pred CchhHHHHHHHHHHHHhcCCCCeEEEEcccHHHHHHHHHHHHHhHhhCCCCccEEEEcCCCcHHHHHHH----h-cCCcE
Q 002135 280 SSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWL----R-DNARL 354 (961)
Q Consensus 280 GSGKTla~~Lpil~~l~~~~~~~aLvl~PtraLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~~~r~~l----~-~~~~I 354 (961)
.+.|-. .++-++... .++.++||.++++.-+....+.|... ++.+..++|+.+..+|..+ + ...+|
T Consensus 29 ~~~K~~-~L~~ll~~~--~~~~k~lVF~~~~~~~~~l~~~L~~~------g~~~~~lhg~~~~~~r~~~~~~f~~g~~~v 99 (185)
T 2jgn_A 29 ESDKRS-FLLDLLNAT--GKDSLTLVFVETKKGADSLEDFLYHE------GYACTSIHGDRSQRDREEALHQFRSGKSPI 99 (185)
T ss_dssp GGGHHH-HHHHHHHHC---CCSCEEEEESCHHHHHHHHHHHHHT------TCCEEEEC--------CHHHHHHHHTSSSE
T ss_pred cHHHHH-HHHHHHHhc--CCCCeEEEEECCHHHHHHHHHHHHHc------CCceEEEeCCCCHHHHHHHHHHHHcCCCeE
Confidence 456643 333444432 24678999999999988888777663 3678889998877665432 2 34789
Q ss_pred EEeC
Q 002135 355 LITN 358 (961)
Q Consensus 355 lItT 358 (961)
+|+|
T Consensus 100 LvaT 103 (185)
T 2jgn_A 100 LVAT 103 (185)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 9998
No 303
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=39.02 E-value=16 Score=36.16 Aligned_cols=20 Identities=30% Similarity=0.420 Sum_probs=16.9
Q ss_pred CCCcEEEEecCCchhHHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~ 288 (961)
.|+.++++++.|||||...-
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~ 47 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAH 47 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 57789999999999997643
No 304
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=38.97 E-value=33 Score=36.62 Aligned_cols=49 Identities=16% Similarity=0.141 Sum_probs=28.2
Q ss_pred CCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEc--ccHHHHHHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMF--PTKALAQDQLR 318 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~--PtraLa~qq~~ 318 (961)
.|+.+++++++|+|||.....-+.. +....+.+++++. |.+.-+.+|..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~-l~~~~G~~V~lv~~D~~r~~a~eqL~ 154 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAI-SMLEKHKKIAFITTDTYRIAAVEQLK 154 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH-HHHTTCCCEEEEECCCSSTTHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH-HHHhcCCEEEEEecCcccchHHHHHH
Confidence 4678899999999999765433322 2222344555543 34444444443
No 305
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=38.94 E-value=42 Score=40.97 Aligned_cols=87 Identities=9% Similarity=0.192 Sum_probs=48.1
Q ss_pred hHHHHHHHHccCCCCCceEEeeecCCcccccccCCccccHHHHHHHHhCCCCCC----cHHHHHHHHHHh---CCCcEEE
Q 002135 203 PLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKL----YSHQAESIMASL---AGKNVVV 275 (961)
Q Consensus 203 ~~~~~~~lr~~~~~~~~iv~~~~~p~~~~~f~~l~~~L~~~l~~~L~~~g~~~l----~~~Q~~ai~~il---~G~~vIv 275 (961)
.+.++..|+..+.....-+..-.+=--..+|..++.--+++.++..+......+ +.+=..|...++ ..+.+||
T Consensus 66 E~svL~nL~~Ry~~~~IYTy~G~iLiaVNPyk~l~~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIii 145 (784)
T 2v26_A 66 EATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIV 145 (784)
T ss_dssp HHHHHHHHHHHHHTTCCEEEETTEEEEECCSSCCTTTTSHHHHHHHTTCCTTSSCSCHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHHHhcCceeeeccceEEEecCCcCcCCCCCHHHHHHHhCCCcccCCchHHHHHHHHHHHHHhcCCCcEEEE
Confidence 467888888776432211111111111123555533346677666654433333 333345555554 3457999
Q ss_pred EecCCchhHHHHHH
Q 002135 276 ATMTSSGKSLCYNL 289 (961)
Q Consensus 276 ~apTGSGKTla~~L 289 (961)
++.+|||||.+.-+
T Consensus 146 SGESGAGKTe~tK~ 159 (784)
T 2v26_A 146 SGESGAGKTENTKF 159 (784)
T ss_dssp ECSTTSSHHHHHHH
T ss_pred cCCCCCCceehHHH
Confidence 99999999988643
No 306
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=38.75 E-value=22 Score=45.69 Aligned_cols=39 Identities=13% Similarity=0.216 Sum_probs=29.9
Q ss_pred EEEEecCCchhHHHHHHHHHHHHhcCCC-CeEEEEcccHH
Q 002135 273 VVVATMTSSGKSLCYNLPVLEALSHDLS-SSALYMFPTKA 311 (961)
Q Consensus 273 vIv~apTGSGKTla~~Lpil~~l~~~~~-~~aLvl~Ptra 311 (961)
-+|.|+.|||||.+..--+...+.+++. .++|+|+|...
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~ 43 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQM 43 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGG
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcc
Confidence 3788999999999877666666655443 68999999764
No 307
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=38.60 E-value=15 Score=40.29 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=20.5
Q ss_pred HHHHHHhCCCc--EEEEecCCchhHHHH
Q 002135 262 ESIMASLAGKN--VVVATMTSSGKSLCY 287 (961)
Q Consensus 262 ~ai~~il~G~~--vIv~apTGSGKTla~ 287 (961)
..+..+++|.| ++..++||||||.+.
T Consensus 76 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 76 QLVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 36677789987 455689999999875
No 308
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=38.54 E-value=18 Score=40.08 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=20.1
Q ss_pred HHHHHhCCCc--EEEEecCCchhHHHH
Q 002135 263 SIMASLAGKN--VVVATMTSSGKSLCY 287 (961)
Q Consensus 263 ai~~il~G~~--vIv~apTGSGKTla~ 287 (961)
.+..++.|.| ++..++||||||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 6777889987 556689999999764
No 309
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=38.49 E-value=12 Score=36.36 Aligned_cols=21 Identities=29% Similarity=0.137 Sum_probs=17.0
Q ss_pred CCCcEEEEecCCchhHHHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCYNL 289 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~L 289 (961)
.|.-+.+++|+|||||..+-.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 466789999999999986543
No 310
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=38.36 E-value=18 Score=38.86 Aligned_cols=37 Identities=11% Similarity=0.140 Sum_probs=23.0
Q ss_pred CCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEc
Q 002135 269 AGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMF 307 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~ 307 (961)
.|.-+.+++|+|||||...-. +..+....++++++..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~--Lag~l~~~~g~V~l~g 135 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGK--LAHRLKNEGTKVLMAA 135 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHH--HHHHHHHTTCCEEEEC
T ss_pred CCcEEEEEcCCCCCHHHHHHH--HHHHHHHcCCeEEEEe
Confidence 567788999999999975432 3232222245555543
No 311
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=38.34 E-value=19 Score=38.83 Aligned_cols=19 Identities=16% Similarity=0.186 Sum_probs=16.6
Q ss_pred CCCcEEEEecCCchhHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCY 287 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~ 287 (961)
.|+-+.|++|+|||||...
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl 143 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLC 143 (305)
T ss_dssp TCSEEEEECSSSSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 6888999999999999743
No 312
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=38.17 E-value=13 Score=35.46 Aligned_cols=17 Identities=12% Similarity=-0.035 Sum_probs=14.3
Q ss_pred cEEEEecCCchhHHHHH
Q 002135 272 NVVVATMTSSGKSLCYN 288 (961)
Q Consensus 272 ~vIv~apTGSGKTla~~ 288 (961)
.++++++.|||||....
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998653
No 313
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=37.77 E-value=20 Score=40.34 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=20.9
Q ss_pred HHHHHHhCCCc--EEEEecCCchhHHHH
Q 002135 262 ESIMASLAGKN--VVVATMTSSGKSLCY 287 (961)
Q Consensus 262 ~ai~~il~G~~--vIv~apTGSGKTla~ 287 (961)
..+..++.|.| ++..++||||||.+.
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 46788899987 456689999999874
No 314
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=37.66 E-value=18 Score=38.95 Aligned_cols=18 Identities=17% Similarity=0.248 Sum_probs=15.6
Q ss_pred CcEEEEecCCchhHHHHH
Q 002135 271 KNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 271 ~~vIv~apTGSGKTla~~ 288 (961)
.++++.+|+|+|||..+.
T Consensus 56 ~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 589999999999998653
No 315
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=37.64 E-value=31 Score=34.56 Aligned_cols=39 Identities=18% Similarity=0.062 Sum_probs=30.7
Q ss_pred CCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccH
Q 002135 270 GKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTK 310 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~Ptr 310 (961)
..++++.+++|.|||.+++--++..+.. +.+++++.-.+
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~--G~rV~~vQF~K 66 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGH--GKNVGVVQFIK 66 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHT--TCCEEEEESSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEeeC
Confidence 3589999999999999988777777654 67888885443
No 316
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=37.61 E-value=19 Score=40.06 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=19.9
Q ss_pred HHHHHHhCCCc--EEEEecCCchhHHHH
Q 002135 262 ESIMASLAGKN--VVVATMTSSGKSLCY 287 (961)
Q Consensus 262 ~ai~~il~G~~--vIv~apTGSGKTla~ 287 (961)
..++.+++|.| ++.-++||||||.+.
T Consensus 125 plv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 125 PLVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 34566788987 556689999999875
No 317
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=37.56 E-value=18 Score=40.07 Aligned_cols=26 Identities=31% Similarity=0.294 Sum_probs=19.3
Q ss_pred HHHHHHhCCCc--EEEEecCCchhHHHH
Q 002135 262 ESIMASLAGKN--VVVATMTSSGKSLCY 287 (961)
Q Consensus 262 ~ai~~il~G~~--vIv~apTGSGKTla~ 287 (961)
..++.+++|.| ++..++||||||.+.
T Consensus 91 plv~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 91 PLIEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHhCCceEEEEeecCCCCCcceec
Confidence 34455678887 556789999999764
No 318
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=37.17 E-value=13 Score=35.54 Aligned_cols=16 Identities=25% Similarity=0.200 Sum_probs=13.8
Q ss_pred cEEEEecCCchhHHHH
Q 002135 272 NVVVATMTSSGKSLCY 287 (961)
Q Consensus 272 ~vIv~apTGSGKTla~ 287 (961)
-++++++.|||||...
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 4789999999999864
No 319
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=37.13 E-value=12 Score=36.34 Aligned_cols=21 Identities=19% Similarity=0.230 Sum_probs=16.9
Q ss_pred CCCcEEEEecCCchhHHHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCYNL 289 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~L 289 (961)
.|..++++++.|||||...-.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~ 23 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASR 23 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 456789999999999986543
No 320
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=36.61 E-value=16 Score=40.19 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=20.0
Q ss_pred HHHHHHhCCCc--EEEEecCCchhHHHH
Q 002135 262 ESIMASLAGKN--VVVATMTSSGKSLCY 287 (961)
Q Consensus 262 ~ai~~il~G~~--vIv~apTGSGKTla~ 287 (961)
..+..+++|.| ++.-++||||||.+.
T Consensus 75 ~lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 75 QLVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhcCCceeEEEEECCCCCCCcEec
Confidence 35666778987 556789999999875
No 321
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=36.12 E-value=17 Score=35.44 Aligned_cols=21 Identities=19% Similarity=0.099 Sum_probs=17.3
Q ss_pred hCCCcEEEEecCCchhHHHHH
Q 002135 268 LAGKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 268 l~G~~vIv~apTGSGKTla~~ 288 (961)
..+..++++++.|||||...-
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~ 27 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCE 27 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 356789999999999998654
No 322
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=36.12 E-value=19 Score=39.66 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=16.4
Q ss_pred CCcEEEEecCCchhHHHHH
Q 002135 270 GKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~~ 288 (961)
..++++.+|+|+|||..+.
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 5689999999999998654
No 323
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=36.09 E-value=16 Score=35.74 Aligned_cols=21 Identities=19% Similarity=0.102 Sum_probs=17.0
Q ss_pred hCCCcEEEEecCCchhHHHHH
Q 002135 268 LAGKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 268 l~G~~vIv~apTGSGKTla~~ 288 (961)
..+..++++++.|||||...-
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~ 30 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCE 30 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 346779999999999998653
No 324
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=35.92 E-value=9.7 Score=39.59 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=15.9
Q ss_pred CCcEEEEecCCchhHHHHH
Q 002135 270 GKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~~ 288 (961)
.+.+++.+|+|+|||..+.
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 4579999999999998654
No 325
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=35.82 E-value=16 Score=36.97 Aligned_cols=20 Identities=20% Similarity=0.134 Sum_probs=16.0
Q ss_pred CCCcEEEEecCCchhHHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~ 288 (961)
.+..+++++++|||||...-
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~ 25 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSS 25 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHH
Confidence 35679999999999998653
No 326
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=35.82 E-value=16 Score=37.28 Aligned_cols=21 Identities=24% Similarity=0.260 Sum_probs=16.8
Q ss_pred HhCCCcEEEEecCCchhHHHH
Q 002135 267 SLAGKNVVVATMTSSGKSLCY 287 (961)
Q Consensus 267 il~G~~vIv~apTGSGKTla~ 287 (961)
+-.|+-+++++|.|||||...
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHH
Confidence 457888999999999999854
No 327
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=35.65 E-value=13 Score=36.06 Aligned_cols=19 Identities=21% Similarity=0.046 Sum_probs=15.7
Q ss_pred CCcEEEEecCCchhHHHHH
Q 002135 270 GKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~~ 288 (961)
+..++++++.|||||....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4568899999999998654
No 328
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=35.51 E-value=22 Score=40.30 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=18.7
Q ss_pred HHHHHhCCCc--EEEEecCCchhHHHH
Q 002135 263 SIMASLAGKN--VVVATMTSSGKSLCY 287 (961)
Q Consensus 263 ai~~il~G~~--vIv~apTGSGKTla~ 287 (961)
.+..+++|.| ++..+.||||||.+.
T Consensus 128 lv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 128 FLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 3445678987 556689999999764
No 329
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=35.37 E-value=17 Score=37.42 Aligned_cols=18 Identities=33% Similarity=0.370 Sum_probs=15.8
Q ss_pred CCCcEEEEecCCchhHHH
Q 002135 269 AGKNVVVATMTSSGKSLC 286 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla 286 (961)
.|+-+.+.+|.|||||..
T Consensus 30 ~Ge~~~iiG~nGsGKSTL 47 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTM 47 (235)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 578899999999999973
No 330
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=35.28 E-value=1.3e+02 Score=32.77 Aligned_cols=77 Identities=9% Similarity=0.034 Sum_probs=52.5
Q ss_pred CCCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEecc-----cccc-cc
Q 002135 524 HGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATN-----ALEL-GI 597 (961)
Q Consensus 524 ~g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~-----aLe~-GI 597 (961)
.+.++||.++++..++.+++.++..... ....+...+|+...... .+.+..+..+|+|+|. .+.. .+
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~~~iiv~T~~~l~~~l~~~~~ 179 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDY----MGASCHACIGGTNVRAE---VQKLQMEAPHIIVGTPGRVFDMLNRRYL 179 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGG----SCCCEEECCCCTTHHHH---HHHHTTTCCSEEEECHHHHHHHHHHTSS
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcc----cCceEEEEECCcchHHH---HHHHhcCCCCEEEECHHHHHHHHHcCCc
Confidence 4578999999999999988888764332 33456677777655433 4456667889999995 2222 24
Q ss_pred ccCCccEEEE
Q 002135 598 DVGHIDVTLH 607 (961)
Q Consensus 598 DIp~vd~VI~ 607 (961)
+...+++||.
T Consensus 180 ~~~~~~~vVi 189 (414)
T 3eiq_A 180 SPKYIKMFVL 189 (414)
T ss_dssp CSTTCCEEEE
T ss_pred ccccCcEEEE
Confidence 5566777764
No 331
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=35.25 E-value=15 Score=37.32 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=12.7
Q ss_pred hCCCcEEEEecCCchhHHHH
Q 002135 268 LAGKNVVVATMTSSGKSLCY 287 (961)
Q Consensus 268 l~G~~vIv~apTGSGKTla~ 287 (961)
..|+-+.+++|+|||||...
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp ECCCEEEEECSCC----CHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35778899999999999754
No 332
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=35.04 E-value=46 Score=33.74 Aligned_cols=61 Identities=18% Similarity=0.078 Sum_probs=38.3
Q ss_pred CCCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEecc
Q 002135 524 HGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATN 591 (961)
Q Consensus 524 ~g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~ 591 (961)
.+.++||.++++..+..+++.+++.... .+..+..++|+..... .......+..+|+|+|.
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~----~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp 157 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEG----TGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTP 157 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTT----SCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcc----cCceEEEEecCccHHH---HhhhhhcCCCCEEEECH
Confidence 3568999999999999998887764332 3345555665432211 11122345678889885
No 333
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=34.85 E-value=18 Score=35.84 Aligned_cols=21 Identities=29% Similarity=0.241 Sum_probs=17.1
Q ss_pred hCCCcEEEEecCCchhHHHHH
Q 002135 268 LAGKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 268 l~G~~vIv~apTGSGKTla~~ 288 (961)
..|.-+.+.++.|||||...-
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~ 43 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLAC 43 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 356788899999999997653
No 334
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=34.72 E-value=52 Score=35.16 Aligned_cols=55 Identities=22% Similarity=0.302 Sum_probs=41.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhHhhCCCCccEEEEcCCCcHHHHHHHh-----cCCcEEEeCh
Q 002135 299 LSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLR-----DNARLLITNP 359 (961)
Q Consensus 299 ~~~~aLvl~PtraLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~~~r~~l~-----~~~~IlItTP 359 (961)
.+.++|+.++++.-+....+.+.+. ++.+..++|+.+..+|..+. ...+|+|+|.
T Consensus 27 ~~~~~LVF~~t~~~~~~l~~~L~~~------g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~ 86 (300)
T 3i32_A 27 SPDRAMVFTRTKAETEEIAQGLLRL------GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD 86 (300)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHTT------TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhC------CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec
Confidence 3678999999999888777766542 36788899998877765432 2478999993
No 335
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=34.69 E-value=80 Score=34.14 Aligned_cols=56 Identities=9% Similarity=0.022 Sum_probs=43.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHHhHhhCCCCccEEEEcCCCcHHHHHHHh-----cCCcEEEeCh
Q 002135 298 DLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLR-----DNARLLITNP 359 (961)
Q Consensus 298 ~~~~~aLvl~PtraLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~~~r~~l~-----~~~~IlItTP 359 (961)
..+.++|+.++++.-+....+.+.+. ++.+..++|+.+..+|..+. ...+|+|+|.
T Consensus 248 ~~~~~~lvf~~~~~~~~~l~~~L~~~------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~ 308 (391)
T 1xti_A 248 LEFNQVVIFVKSVQRCIALAQLLVEQ------NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN 308 (391)
T ss_dssp SCCSEEEEECSCHHHHHHHHHHHHHT------TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC
T ss_pred cCCCcEEEEeCcHHHHHHHHHHHHhC------CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC
Confidence 35679999999999999888887663 36688899998887765432 2478999993
No 336
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=34.50 E-value=16 Score=35.60 Aligned_cols=19 Identities=16% Similarity=0.226 Sum_probs=15.6
Q ss_pred CCcEEEEecCCchhHHHHH
Q 002135 270 GKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~~ 288 (961)
+..++++++.|||||...-
T Consensus 5 ~~~I~l~G~~GsGKST~~~ 23 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQ 23 (193)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568899999999998654
No 337
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=34.37 E-value=86 Score=35.02 Aligned_cols=76 Identities=12% Similarity=0.017 Sum_probs=52.2
Q ss_pred CCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEeccc-----ccc-ccc
Q 002135 525 GLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNA-----LEL-GID 598 (961)
Q Consensus 525 g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~a-----Le~-GID 598 (961)
+.++||.++|+..+..+++.+++... .....+..++||.+..++.... ....+|+|+|.- +.. .++
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~----~~~~~~~~~~gg~~~~~~~~~l----~~~~~Ivv~Tp~~l~~~l~~~~~~ 200 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAF----ESYLKIGIVYGGTSFRHQNECI----TRGCHVVIATPGRLLDFVDRTFIT 200 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTT----TSSCCCCEECTTSCHHHHHHHH----TTCCSEEEECHHHHHHHHHTTSCC
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhc----cCCcEEEEEECCCCHHHHHHHh----hcCCCEEEEChHHHHHHHHhCCcc
Confidence 45899999999999999887776432 2334677889998876544332 245789999972 222 245
Q ss_pred cCCccEEEEe
Q 002135 599 VGHIDVTLHL 608 (961)
Q Consensus 599 Ip~vd~VI~~ 608 (961)
+..++++|.-
T Consensus 201 l~~~~~lVlD 210 (434)
T 2db3_A 201 FEDTRFVVLD 210 (434)
T ss_dssp CTTCCEEEEE
T ss_pred cccCCeEEEc
Confidence 6777777743
No 338
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=34.12 E-value=18 Score=36.00 Aligned_cols=19 Identities=26% Similarity=0.095 Sum_probs=15.4
Q ss_pred CCCcEEEEecCCchhHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCY 287 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~ 287 (961)
.|.-+.+++|+|||||...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CcEEEEEECCCCCCHHHHH
Confidence 4556789999999999754
No 339
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=34.07 E-value=21 Score=39.84 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=18.1
Q ss_pred HHHHhCCCc--EEEEecCCchhHHHH
Q 002135 264 IMASLAGKN--VVVATMTSSGKSLCY 287 (961)
Q Consensus 264 i~~il~G~~--vIv~apTGSGKTla~ 287 (961)
++.+++|.| ++.-++||||||.+.
T Consensus 91 v~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 91 LRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHhhcCceeeEeeecCCCCCCCeEe
Confidence 345678887 556789999999764
No 340
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=33.54 E-value=26 Score=37.65 Aligned_cols=18 Identities=11% Similarity=0.102 Sum_probs=15.3
Q ss_pred CcEEEEecCCchhHHHHH
Q 002135 271 KNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 271 ~~vIv~apTGSGKTla~~ 288 (961)
.++++.+|+|+|||....
T Consensus 59 ~~~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTIL 76 (353)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 469999999999997653
No 341
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=33.52 E-value=19 Score=34.88 Aligned_cols=18 Identities=28% Similarity=0.296 Sum_probs=15.2
Q ss_pred CcEEEEecCCchhHHHHH
Q 002135 271 KNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 271 ~~vIv~apTGSGKTla~~ 288 (961)
..++++++.|||||....
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGR 20 (184)
T ss_dssp CSEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 468999999999998654
No 342
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=33.50 E-value=59 Score=35.48 Aligned_cols=55 Identities=15% Similarity=0.169 Sum_probs=43.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhHhhCCCCccEEEEcCCCcHHHHHHHh-----cCCcEEEeCh
Q 002135 299 LSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLR-----DNARLLITNP 359 (961)
Q Consensus 299 ~~~~aLvl~PtraLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~~~r~~l~-----~~~~IlItTP 359 (961)
.+.++|+.++++.-+....+.+.+. +..+..++|+.+..+|..+. ...+|+|+|.
T Consensus 265 ~~~~~lvf~~~~~~~~~l~~~L~~~------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 324 (412)
T 3fht_A 265 TIAQAMIFCHTRKTASWLAAELSKE------GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN 324 (412)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHT------TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhC------CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC
Confidence 4578999999999999888888764 35678899998888775442 3478999994
No 343
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=33.32 E-value=16 Score=41.49 Aligned_cols=19 Identities=26% Similarity=0.357 Sum_probs=16.3
Q ss_pred CCcEEEEecCCchhHHHHH
Q 002135 270 GKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~~ 288 (961)
++++++.+|+|+|||..+.
T Consensus 63 ~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHH
Confidence 4689999999999998654
No 344
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=33.30 E-value=14 Score=39.50 Aligned_cols=19 Identities=11% Similarity=0.064 Sum_probs=16.1
Q ss_pred CCcEEEEecCCchhHHHHH
Q 002135 270 GKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~~ 288 (961)
..++++.+|+|+|||..+.
T Consensus 38 ~~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CCCCEEECCTTCCCHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 3689999999999997653
No 345
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=33.29 E-value=20 Score=38.53 Aligned_cols=20 Identities=25% Similarity=0.162 Sum_probs=16.5
Q ss_pred CCCcEEEEecCCchhHHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~ 288 (961)
...++++.+|+|+|||..+.
T Consensus 44 ~~~~vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAVR 63 (350)
T ss_dssp GGCCEEEECCGGGCTTHHHH
T ss_pred CCceEEEECCCCccHHHHHH
Confidence 34679999999999998654
No 346
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=33.26 E-value=20 Score=40.65 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=16.3
Q ss_pred CCcEEEEecCCchhHHHHH
Q 002135 270 GKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~~ 288 (961)
.+++++.+|+|+|||..+-
T Consensus 50 ~~~iLl~GppGtGKT~lar 68 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIAR 68 (444)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 4689999999999998653
No 347
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=32.96 E-value=75 Score=36.24 Aligned_cols=76 Identities=12% Similarity=-0.006 Sum_probs=52.0
Q ss_pred CCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEecc-ccc----cc-c-
Q 002135 525 GLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATN-ALE----LG-I- 597 (961)
Q Consensus 525 g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~-aLe----~G-I- 597 (961)
+.++||.|+++..++...+.++..+.. .+..+..++|+.+...+..... +..+|+|+|. .+. .+ +
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~ 123 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFER----LGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIP 123 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHT----TTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhcc----CCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccc
Confidence 679999999999999988888775543 2456889999986654432221 1368999997 222 22 2
Q ss_pred ccCCccEEEEe
Q 002135 598 DVGHIDVTLHL 608 (961)
Q Consensus 598 DIp~vd~VI~~ 608 (961)
++.++++||.-
T Consensus 124 ~~~~~~~vViD 134 (555)
T 3tbk_A 124 SLSVFTLMIFD 134 (555)
T ss_dssp CGGGCSEEEET
T ss_pred ccccCCEEEEE
Confidence 55667887743
No 348
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=32.85 E-value=1.3e+02 Score=32.78 Aligned_cols=74 Identities=15% Similarity=0.077 Sum_probs=51.2
Q ss_pred CcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEeccc-----ccc-cccc
Q 002135 526 LRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNA-----LEL-GIDV 599 (961)
Q Consensus 526 ~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~a-----Le~-GIDI 599 (961)
.++||.++++..++.+++.+++.... ....+..++||.+..+.... +. ...+|+|+|.- +.. .++.
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~---~~-~~~~I~v~Tp~~l~~~l~~~~~~~ 173 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYR----SRVRPCVVYGGADIGQQIRD---LE-RGCHLLVATPGRLVDMMERGKIGL 173 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTT----SSCCEEEECSSSCHHHHHHH---HT-TCCSEEEECHHHHHHHHHTTSBCC
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCc----CCceEEEEECCCCHHHHHHH---hh-CCCCEEEEChHHHHHHHHcCCcCh
Confidence 47999999999999998888764432 34467888999877654332 22 35689999972 222 2456
Q ss_pred CCccEEEE
Q 002135 600 GHIDVTLH 607 (961)
Q Consensus 600 p~vd~VI~ 607 (961)
..+++||.
T Consensus 174 ~~~~~iVi 181 (417)
T 2i4i_A 174 DFCKYLVL 181 (417)
T ss_dssp TTCCEEEE
T ss_pred hhCcEEEE
Confidence 67777774
No 349
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=32.85 E-value=19 Score=35.97 Aligned_cols=31 Identities=16% Similarity=0.206 Sum_probs=21.6
Q ss_pred cHHHHHHHHHHhCCCcEEEEecCCchhHHHHH
Q 002135 257 YSHQAESIMASLAGKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 257 ~~~Q~~ai~~il~G~~vIv~apTGSGKTla~~ 288 (961)
++.+... ..+..|..++++++.|||||...-
T Consensus 13 ~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~~ 43 (211)
T 1m7g_A 13 TRSERTE-LRNQRGLTIWLTGLSASGKSTLAV 43 (211)
T ss_dssp CHHHHHH-HHTSSCEEEEEECSTTSSHHHHHH
T ss_pred CHHHhhc-ccCCCCCEEEEECCCCCCHHHHHH
Confidence 3444444 334567789999999999997653
No 350
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=32.75 E-value=19 Score=35.69 Aligned_cols=19 Identities=21% Similarity=0.156 Sum_probs=15.5
Q ss_pred CCCcEEEEecCCchhHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCY 287 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~ 287 (961)
.+.-+.+++++|||||...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4556889999999999754
No 351
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=32.73 E-value=17 Score=36.25 Aligned_cols=19 Identities=26% Similarity=0.223 Sum_probs=15.3
Q ss_pred CCCcEEEEecCCchhHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCY 287 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~ 287 (961)
.|.-+.|.+|+|||||...
T Consensus 21 ~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp SCEEEEEECCTTSCTHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4567889999999999743
No 352
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=32.61 E-value=1.2e+02 Score=31.76 Aligned_cols=75 Identities=17% Similarity=0.154 Sum_probs=50.2
Q ss_pred CCCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEecccc-----cc-cc
Q 002135 524 HGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNAL-----EL-GI 597 (961)
Q Consensus 524 ~g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~aL-----e~-GI 597 (961)
.+.++|+.++++..++.+++.+++.. ......+..++|+.+..+.... +. ..+++|+|.-. .. .+
T Consensus 55 ~~~~~liv~P~~~L~~q~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~---~~--~~~i~v~T~~~l~~~~~~~~~ 125 (337)
T 2z0m_A 55 LGMKSLVVTPTRELTRQVASHIRDIG----RYMDTKVAEVYGGMPYKAQINR---VR--NADIVVATPGRLLDLWSKGVI 125 (337)
T ss_dssp HTCCEEEECSSHHHHHHHHHHHHHHT----TTSCCCEEEECTTSCHHHHHHH---HT--TCSEEEECHHHHHHHHHTTSC
T ss_pred hcCCEEEEeCCHHHHHHHHHHHHHHh----hhcCCcEEEEECCcchHHHHhh---cC--CCCEEEECHHHHHHHHHcCCc
Confidence 47799999999999999888776643 2234568889999887654432 22 36899999621 11 23
Q ss_pred ccCCccEEEE
Q 002135 598 DVGHIDVTLH 607 (961)
Q Consensus 598 DIp~vd~VI~ 607 (961)
+..++++||.
T Consensus 126 ~~~~~~~iVi 135 (337)
T 2z0m_A 126 DLSSFEIVII 135 (337)
T ss_dssp CGGGCSEEEE
T ss_pred chhhCcEEEE
Confidence 4455666653
No 353
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=32.59 E-value=22 Score=33.85 Aligned_cols=19 Identities=26% Similarity=0.274 Sum_probs=16.1
Q ss_pred CcEEEEecCCchhHHHHHH
Q 002135 271 KNVVVATMTSSGKSLCYNL 289 (961)
Q Consensus 271 ~~vIv~apTGSGKTla~~L 289 (961)
++++++++.|||||.+.-.
T Consensus 8 ~~i~l~G~~GsGKSTva~~ 26 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQE 26 (168)
T ss_dssp CEEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 5799999999999987643
No 354
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=32.53 E-value=24 Score=38.83 Aligned_cols=50 Identities=20% Similarity=0.228 Sum_probs=27.9
Q ss_pred CCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEc-cc-HHHHHHHHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMF-PT-KALAQDQLRAL 320 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~-Pt-raLa~qq~~~l 320 (961)
.|.-+.+++|+|||||...-. +..+....++++++.. ++ +.-+.+|...+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~--Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~ 207 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGK--LAHRLKNEGTKVLMAAGDTFRAAASDQLEIW 207 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHH--HHHHHHHTTCCEEEECCCCSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHH--HHhhccccCCEEEEecccccccchhHHHHHH
Confidence 466788999999999975432 3222222245555543 33 33334444433
No 355
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=32.46 E-value=23 Score=35.57 Aligned_cols=20 Identities=10% Similarity=0.162 Sum_probs=15.8
Q ss_pred CCcEEEEecCCchhHHHHHH
Q 002135 270 GKNVVVATMTSSGKSLCYNL 289 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~~L 289 (961)
+..+.+++|+|||||...-+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~ 24 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKA 24 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34688999999999986543
No 356
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=32.41 E-value=20 Score=35.30 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=16.6
Q ss_pred CCCcEEEEecCCchhHHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~ 288 (961)
.|..++++++.|||||...-
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~ 22 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCM 22 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 46779999999999998653
No 357
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=32.40 E-value=95 Score=35.43 Aligned_cols=76 Identities=8% Similarity=-0.046 Sum_probs=49.7
Q ss_pred CCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEeccc-cc----cc-c-
Q 002135 525 GLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNA-LE----LG-I- 597 (961)
Q Consensus 525 g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~a-Le----~G-I- 597 (961)
+.++||.|+++..+..+.+.++..+.. .+..+..++|+.+...+..... ...+|+|+|.- +. .| +
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~ 126 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFER----QGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLT 126 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGG----GTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcc----cCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccc
Confidence 678999999999999988888775543 2456888999987665433222 13679999972 22 22 3
Q ss_pred ccCCccEEEEe
Q 002135 598 DVGHIDVTLHL 608 (961)
Q Consensus 598 DIp~vd~VI~~ 608 (961)
++..+++||.-
T Consensus 127 ~~~~~~~vViD 137 (556)
T 4a2p_A 127 SLSIFTLMIFD 137 (556)
T ss_dssp CSTTCSEEEEE
T ss_pred ccccCCEEEEE
Confidence 56778888854
No 358
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=32.38 E-value=72 Score=40.08 Aligned_cols=86 Identities=9% Similarity=0.050 Sum_probs=48.3
Q ss_pred hHHHHHHHHccCCCCCceEEeeecCCcccccccCCccccHHHHHHHHhCCCCCCcH----HHHHHHHHHh---CCCcEEE
Q 002135 203 PLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLYS----HQAESIMASL---AGKNVVV 275 (961)
Q Consensus 203 ~~~~~~~lr~~~~~~~~iv~~~~~p~~~~~f~~l~~~L~~~l~~~L~~~g~~~l~~----~Q~~ai~~il---~G~~vIv 275 (961)
.+.++..|+..+......+..-.+=--..+|..++ --+++++...+......+-| +=..|...++ ..+.+||
T Consensus 99 e~~vl~nL~~Ry~~~~iYTy~G~ilvavNPyk~l~-iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIii 177 (1010)
T 1g8x_A 99 EPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIP-IYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLI 177 (1010)
T ss_dssp HHHHHHHHHHHHTTTCCEEEETTEEEEECCSSCCS-CCSHHHHHHHTTCCTTTSCCCHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHHHhhCCceeccCceeEEecCCcccc-CCCHHHHHHhcCCCccCCCccHHHHHHHHHHHHHhcCCCeEEEE
Confidence 47888889887753221111111111112344554 35677777665443333333 3335555544 3457999
Q ss_pred EecCCchhHHHHHH
Q 002135 276 ATMTSSGKSLCYNL 289 (961)
Q Consensus 276 ~apTGSGKTla~~L 289 (961)
++.+|||||.+.-+
T Consensus 178 sGESGAGKTe~~K~ 191 (1010)
T 1g8x_A 178 TGESGAGKTENTKK 191 (1010)
T ss_dssp EESTTSSHHHHHHH
T ss_pred eCCCCCCcchHHHH
Confidence 99999999988643
No 359
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=32.35 E-value=18 Score=34.23 Aligned_cols=15 Identities=27% Similarity=0.191 Sum_probs=13.1
Q ss_pred cEEEEecCCchhHHH
Q 002135 272 NVVVATMTSSGKSLC 286 (961)
Q Consensus 272 ~vIv~apTGSGKTla 286 (961)
-.+|.+|+|||||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 468899999999975
No 360
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=32.34 E-value=25 Score=38.19 Aligned_cols=19 Identities=16% Similarity=0.195 Sum_probs=15.7
Q ss_pred CCCcEEEEecCCchhHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCY 287 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~ 287 (961)
.|.-+.+++|+|+|||...
T Consensus 128 ~g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SSEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4567889999999999753
No 361
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=32.25 E-value=28 Score=33.82 Aligned_cols=21 Identities=24% Similarity=0.232 Sum_probs=16.7
Q ss_pred CCCcEEEEecCCchhHHHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCYNL 289 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~L 289 (961)
.|..++++++.|||||...-.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~ 32 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATR 32 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 456789999999999986543
No 362
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=32.10 E-value=97 Score=33.64 Aligned_cols=56 Identities=9% Similarity=0.041 Sum_probs=43.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHHhHhhCCCCccEEEEcCCCcHHHHHHHh-----cCCcEEEeCh
Q 002135 298 DLSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLR-----DNARLLITNP 359 (961)
Q Consensus 298 ~~~~~aLvl~PtraLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~~~r~~l~-----~~~~IlItTP 359 (961)
..+.++|+.++++.-+....+.+.+. ++.+..++|+.+..+|..+. ...+|+|+|.
T Consensus 256 ~~~~~~lVf~~~~~~~~~l~~~L~~~------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~ 316 (400)
T 1s2m_A 256 LQINQAIIFCNSTNRVELLAKKITDL------GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD 316 (400)
T ss_dssp SCCSEEEEECSSHHHHHHHHHHHHHH------TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS
T ss_pred cCCCcEEEEEecHHHHHHHHHHHHhc------CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC
Confidence 34678999999999998888887764 25688899998887765432 2468999993
No 363
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=32.05 E-value=22 Score=39.45 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=19.3
Q ss_pred HHHHHhCCCc--EEEEecCCchhHHHH
Q 002135 263 SIMASLAGKN--VVVATMTSSGKSLCY 287 (961)
Q Consensus 263 ai~~il~G~~--vIv~apTGSGKTla~ 287 (961)
.+..+++|.| ++.-++||||||.+.
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 5566778987 556689999999764
No 364
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=31.87 E-value=57 Score=36.44 Aligned_cols=30 Identities=13% Similarity=0.210 Sum_probs=23.2
Q ss_pred HHHHHHHHh---CCCcEEEEecCCchhHHHHHH
Q 002135 260 QAESIMASL---AGKNVVVATMTSSGKSLCYNL 289 (961)
Q Consensus 260 Q~~ai~~il---~G~~vIv~apTGSGKTla~~L 289 (961)
=..+|+..+ .|+.+.+.+|+|+|||.....
T Consensus 161 GiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~ 193 (422)
T 3ice_A 161 TARVLDLASPIGRGQRGLIVAPPKAGKTMLLQN 193 (422)
T ss_dssp HHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHH
T ss_pred cceeeeeeeeecCCcEEEEecCCCCChhHHHHH
Confidence 346666644 689999999999999986543
No 365
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=31.84 E-value=16 Score=35.65 Aligned_cols=19 Identities=21% Similarity=0.209 Sum_probs=15.0
Q ss_pred CCcEEEEecCCchhHHHHH
Q 002135 270 GKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~~ 288 (961)
|.-+++++|.|||||...-
T Consensus 2 g~ii~l~G~~GaGKSTl~~ 20 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCK 20 (189)
T ss_dssp EEEEEEECSTTSSHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 3457899999999998543
No 366
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=31.66 E-value=22 Score=36.50 Aligned_cols=17 Identities=24% Similarity=0.245 Sum_probs=14.6
Q ss_pred CcEEEEecCCchhHHHH
Q 002135 271 KNVVVATMTSSGKSLCY 287 (961)
Q Consensus 271 ~~vIv~apTGSGKTla~ 287 (961)
+.+++.+|+|+|||...
T Consensus 50 ~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45999999999999754
No 367
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=31.60 E-value=18 Score=35.66 Aligned_cols=18 Identities=33% Similarity=0.379 Sum_probs=15.3
Q ss_pred CcEEEEecCCchhHHHHH
Q 002135 271 KNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 271 ~~vIv~apTGSGKTla~~ 288 (961)
..++++++.|||||...-
T Consensus 19 ~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SCEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 479999999999998653
No 368
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=31.58 E-value=20 Score=34.64 Aligned_cols=16 Identities=25% Similarity=0.115 Sum_probs=13.6
Q ss_pred cEEEEecCCchhHHHH
Q 002135 272 NVVVATMTSSGKSLCY 287 (961)
Q Consensus 272 ~vIv~apTGSGKTla~ 287 (961)
-.++++|+|||||...
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 5689999999999753
No 369
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=31.50 E-value=49 Score=40.27 Aligned_cols=86 Identities=12% Similarity=0.105 Sum_probs=47.7
Q ss_pred hHHHHHHHHccCCCCCceEEeeecCCcccccccCCccccHHHHHHHHhCCCCCC----cHHHHHHHHHHh---CCCcEEE
Q 002135 203 PLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKL----YSHQAESIMASL---AGKNVVV 275 (961)
Q Consensus 203 ~~~~~~~lr~~~~~~~~iv~~~~~p~~~~~f~~l~~~L~~~l~~~L~~~g~~~l----~~~Q~~ai~~il---~G~~vIv 275 (961)
.+.++..||..+.....-+..-.+---..+|..++ --+++.++..+......+ +.+=..|...++ ..+.+||
T Consensus 98 E~svL~nL~~Ry~~~~IYTy~G~iLvavNPyk~l~-iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIii 176 (783)
T 4db1_A 98 EPAVLYNLKDRYGSWMIYTYSGLFCVTVNPYKWLP-VYTPEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQSILI 176 (783)
T ss_dssp HHHHHHHHHHHHHTTCCEEEETTEEEEECCSSCCS-CSSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHHhcCCceEEecCceeEecCCCccCC-CCCHHHHHHhcCCCcCCCCchhhHHHHHHHHHHHhhCCCceEEE
Confidence 46788888877643221111111111122355554 356676666654333333 334445555554 3457999
Q ss_pred EecCCchhHHHHHH
Q 002135 276 ATMTSSGKSLCYNL 289 (961)
Q Consensus 276 ~apTGSGKTla~~L 289 (961)
++..|+|||.+.-+
T Consensus 177 SGESGAGKTe~tK~ 190 (783)
T 4db1_A 177 TGESGAGKTVNTKR 190 (783)
T ss_dssp ECSTTSSHHHHHHH
T ss_pred eCCCCCCCchHHHH
Confidence 99999999998654
No 370
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=31.46 E-value=20 Score=34.63 Aligned_cols=20 Identities=20% Similarity=0.293 Sum_probs=16.3
Q ss_pred CCCcEEEEecCCchhHHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~ 288 (961)
.|..++++++.|||||...-
T Consensus 4 ~g~~i~l~G~~GsGKST~~~ 23 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSM 23 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46678899999999998643
No 371
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=31.43 E-value=25 Score=33.72 Aligned_cols=19 Identities=37% Similarity=0.377 Sum_probs=15.5
Q ss_pred CcEEEEecCCchhHHHHHH
Q 002135 271 KNVVVATMTSSGKSLCYNL 289 (961)
Q Consensus 271 ~~vIv~apTGSGKTla~~L 289 (961)
+.++++++.|||||.....
T Consensus 5 ~~i~i~G~~GsGKsTla~~ 23 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARA 23 (175)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHH
Confidence 3689999999999986543
No 372
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=31.42 E-value=20 Score=35.70 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=14.9
Q ss_pred cEEEEecCCchhHHHHHH
Q 002135 272 NVVVATMTSSGKSLCYNL 289 (961)
Q Consensus 272 ~vIv~apTGSGKTla~~L 289 (961)
.++++++.|||||.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQ 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999986543
No 373
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=31.14 E-value=1.3e+02 Score=36.57 Aligned_cols=75 Identities=9% Similarity=-0.004 Sum_probs=49.2
Q ss_pred CCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEeccc-c----ccc-c-
Q 002135 525 GLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNA-L----ELG-I- 597 (961)
Q Consensus 525 g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~a-L----e~G-I- 597 (961)
+.++||.|+++..++.....+++.+.. .+..+..+||+.+...+..... +..+|+|+|.- + ..+ +
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~----~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~ 367 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFER----QGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLT 367 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGG----GTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhccc----CCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccc
Confidence 679999999999999988888775543 2457889999987665433222 25789999962 2 222 3
Q ss_pred ccCCccEEEE
Q 002135 598 DVGHIDVTLH 607 (961)
Q Consensus 598 DIp~vd~VI~ 607 (961)
++.++++||.
T Consensus 368 ~~~~~~~iVi 377 (797)
T 4a2q_A 368 SLSIFTLMIF 377 (797)
T ss_dssp CGGGCSEEEE
T ss_pred ccccCCEEEE
Confidence 4566788874
No 374
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=30.44 E-value=27 Score=36.66 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=16.3
Q ss_pred hCCCcEEEEecCCchhHHH
Q 002135 268 LAGKNVVVATMTSSGKSLC 286 (961)
Q Consensus 268 l~G~~vIv~apTGSGKTla 286 (961)
..|+-+.+.+|.|||||..
T Consensus 35 ~~Ge~~~liG~nGsGKSTL 53 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTL 53 (266)
T ss_dssp ETTCEEEEECCTTSCHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3678899999999999974
No 375
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.24 E-value=19 Score=40.78 Aligned_cols=18 Identities=22% Similarity=0.250 Sum_probs=15.8
Q ss_pred CCcEEEEecCCchhHHHH
Q 002135 270 GKNVVVATMTSSGKSLCY 287 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~ 287 (961)
.+.+++.+|+|+|||+.+
T Consensus 215 prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CCeeEEECcCCCCHHHHH
Confidence 468999999999999864
No 376
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=30.21 E-value=22 Score=35.49 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=14.8
Q ss_pred cEEEEecCCchhHHHHHH
Q 002135 272 NVVVATMTSSGKSLCYNL 289 (961)
Q Consensus 272 ~vIv~apTGSGKTla~~L 289 (961)
+++++++.|||||.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGER 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999986543
No 377
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=30.21 E-value=18 Score=38.49 Aligned_cols=17 Identities=18% Similarity=0.208 Sum_probs=14.5
Q ss_pred CcEEEEecCCchhHHHH
Q 002135 271 KNVVVATMTSSGKSLCY 287 (961)
Q Consensus 271 ~~vIv~apTGSGKTla~ 287 (961)
.-+++++|.|||||...
T Consensus 34 ~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEEECCTTSCTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999754
No 378
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=30.12 E-value=29 Score=38.26 Aligned_cols=22 Identities=23% Similarity=0.161 Sum_probs=16.9
Q ss_pred HHh-CCCc--EEEEecCCchhHHHH
Q 002135 266 ASL-AGKN--VVVATMTSSGKSLCY 287 (961)
Q Consensus 266 ~il-~G~~--vIv~apTGSGKTla~ 287 (961)
.++ .|.| ++.-++||||||.+.
T Consensus 78 ~~~~~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 78 DLYENGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HHHHHCCEEEEEEECCTTSSHHHHH
T ss_pred hhccCCceeEEEeeCCCCCCCCEEE
Confidence 344 4777 578899999999764
No 379
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=30.07 E-value=24 Score=33.52 Aligned_cols=18 Identities=6% Similarity=0.102 Sum_probs=15.1
Q ss_pred CcEEEEecCCchhHHHHH
Q 002135 271 KNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 271 ~~vIv~apTGSGKTla~~ 288 (961)
+.++++++.|||||....
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGR 20 (173)
T ss_dssp CCEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 468899999999998654
No 380
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=30.07 E-value=23 Score=36.68 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=16.1
Q ss_pred CCCcEEEEecCCchhHHH
Q 002135 269 AGKNVVVATMTSSGKSLC 286 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla 286 (961)
.|+-+.+.+|.|||||..
T Consensus 34 ~Ge~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTL 51 (247)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 678899999999999974
No 381
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=30.02 E-value=20 Score=39.63 Aligned_cols=17 Identities=29% Similarity=0.333 Sum_probs=14.2
Q ss_pred cEEEEecCCchhHHHHH
Q 002135 272 NVVVATMTSSGKSLCYN 288 (961)
Q Consensus 272 ~vIv~apTGSGKTla~~ 288 (961)
-++|++|||||||..+-
T Consensus 25 ~~~i~G~NGaGKTTll~ 41 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFE 41 (365)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 47799999999998653
No 382
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=30.02 E-value=30 Score=34.66 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=16.5
Q ss_pred CCcEEEEecCCchhHHHHHH
Q 002135 270 GKNVVVATMTSSGKSLCYNL 289 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~~L 289 (961)
+..+++.++.|||||...-.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~ 24 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCEL 24 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 46799999999999986543
No 383
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=30.00 E-value=96 Score=33.37 Aligned_cols=55 Identities=22% Similarity=0.301 Sum_probs=42.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhHhhCCCCccEEEEcCCCcHHHHHHHh----c-CCcEEEeCh
Q 002135 299 LSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLR----D-NARLLITNP 359 (961)
Q Consensus 299 ~~~~aLvl~PtraLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~~~r~~l~----~-~~~IlItTP 359 (961)
.+.++|+.++++.-+....+.+++. +..+..++|+.+..+|..+. + ..+|+|+|.
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 301 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE------GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN 301 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT------TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc------CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC
Confidence 4578999999999998888877664 35688899998887775442 2 468999994
No 384
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=29.98 E-value=78 Score=38.77 Aligned_cols=59 Identities=17% Similarity=0.057 Sum_probs=46.1
Q ss_pred CCCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEeccc
Q 002135 524 HGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNA 592 (961)
Q Consensus 524 ~g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~a 592 (961)
.|.+++|.|+|+.-|...++.+...... ++..+.++.||++.++|+... ...|+|+|+.
T Consensus 114 ~g~~vlVltPTreLA~Q~~e~~~~l~~~----lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpg 172 (853)
T 2fsf_A 114 TGKGVHVVTVNDYLAQRDAENNRPLFEF----LGLTVGINLPGMPAPAKREAY------AADITYGTNN 172 (853)
T ss_dssp TSSCCEEEESSHHHHHHHHHHHHHHHHH----TTCCEEECCTTCCHHHHHHHH------HSSEEEEEHH
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHHHHh----cCCeEEEEeCCCCHHHHHHhc------CCCEEEECCc
Confidence 5678999999999999988887765443 455788899999987665543 3689999983
No 385
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=29.82 E-value=69 Score=35.93 Aligned_cols=54 Identities=7% Similarity=0.048 Sum_probs=39.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhHhhCCCCccEEEEcCCCcHHHHHHHhc-CCcEEEeCh
Q 002135 300 SSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRD-NARLLITNP 359 (961)
Q Consensus 300 ~~~aLvl~PtraLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~~~r~~l~~-~~~IlItTP 359 (961)
+.++|+++|++.-+...++.+++. +..+..++|+.........++ ..+|+|+|.
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~------~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT~ 225 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA------GKKVLYLNRKTFESEYPKCKSEKWDFVITTD 225 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT------TCCEEEESTTTHHHHTTHHHHSCCSEEEECG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc------CCeEEEeCCccHHHHHHhhcCCCCeEEEECc
Confidence 557999999999999888887764 367899999743332223333 479999994
No 386
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=29.81 E-value=25 Score=35.12 Aligned_cols=21 Identities=19% Similarity=-0.016 Sum_probs=16.9
Q ss_pred CCCcEEEEecCCchhHHHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCYNL 289 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~L 289 (961)
.|.-+.+.+|+|||||.....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~ 44 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHT 44 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 466799999999999975443
No 387
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=29.70 E-value=21 Score=42.15 Aligned_cols=16 Identities=13% Similarity=0.204 Sum_probs=14.4
Q ss_pred cEEEEecCCchhHHHH
Q 002135 272 NVVVATMTSSGKSLCY 287 (961)
Q Consensus 272 ~vIv~apTGSGKTla~ 287 (961)
++++.+|+|+|||..+
T Consensus 329 ~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 329 HILIIGDPGTAKSQML 344 (595)
T ss_dssp CEEEEESSCCTHHHHH
T ss_pred ceEEECCCchHHHHHH
Confidence 8999999999999743
No 388
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=29.64 E-value=24 Score=34.86 Aligned_cols=20 Identities=35% Similarity=0.398 Sum_probs=16.7
Q ss_pred CCCcEEEEecCCchhHHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~ 288 (961)
.|..++++++.|||||...-
T Consensus 9 ~~~~I~l~G~~GsGKST~~~ 28 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSK 28 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHH
Confidence 46679999999999998654
No 389
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=29.63 E-value=23 Score=34.85 Aligned_cols=19 Identities=16% Similarity=0.064 Sum_probs=15.6
Q ss_pred CCcEEEEecCCchhHHHHH
Q 002135 270 GKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~~ 288 (961)
+..++++++.|||||...-
T Consensus 20 ~~~I~l~G~~GsGKST~a~ 38 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAV 38 (201)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3468999999999998654
No 390
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=29.57 E-value=83 Score=35.79 Aligned_cols=74 Identities=8% Similarity=-0.035 Sum_probs=50.6
Q ss_pred CCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEeccc-cccc--cccCC
Q 002135 525 GLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNA-LELG--IDVGH 601 (961)
Q Consensus 525 g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~a-Le~G--IDIp~ 601 (961)
+.++||.|+++..++...+.+++. .......+..++|+.+..++ ..+..+|+|+|.- +... ....+
T Consensus 157 ~~~vlvl~P~~~L~~Q~~~~~~~~----~~~~~~~v~~~~~~~~~~~~-------~~~~~~I~i~T~~~l~~~~~~~~~~ 225 (510)
T 2oca_A 157 EGKILIIVPTTALTTQMADDFVDY----RLFSHAMIKKIGGGASKDDK-------YKNDAPVVVGTWQTVVKQPKEWFSQ 225 (510)
T ss_dssp SSEEEEEESSHHHHHHHHHHHHHT----TSSCGGGEEECGGGCCTTGG-------GCTTCSEEEEEHHHHTTSCGGGGGG
T ss_pred CCeEEEEECcHHHHHHHHHHHHHh----hcCCccceEEEecCCccccc-------cccCCcEEEEeHHHHhhchhhhhhc
Confidence 349999999999998888777542 11122367888988776654 4677899999973 3222 34566
Q ss_pred ccEEEEeC
Q 002135 602 IDVTLHLG 609 (961)
Q Consensus 602 vd~VI~~~ 609 (961)
+++||.-.
T Consensus 226 ~~liIiDE 233 (510)
T 2oca_A 226 FGMMMNDE 233 (510)
T ss_dssp EEEEEEET
T ss_pred CCEEEEEC
Confidence 77777544
No 391
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=29.52 E-value=54 Score=39.40 Aligned_cols=86 Identities=10% Similarity=0.128 Sum_probs=45.7
Q ss_pred hHHHHHHHHccCCCCCceEEeeecCCcccccccCCccccHHHHHHHHhCCCCCC----cHHHHHHHHHHh---CCCcEEE
Q 002135 203 PLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKL----YSHQAESIMASL---AGKNVVV 275 (961)
Q Consensus 203 ~~~~~~~lr~~~~~~~~iv~~~~~p~~~~~f~~l~~~L~~~l~~~L~~~g~~~l----~~~Q~~ai~~il---~G~~vIv 275 (961)
.+.++..|+..+.....-+..-.+=--..+|..++ --+++.++..+......+ +.+=..|...++ ..+.+||
T Consensus 21 E~~vl~nL~~Ry~~~~IYTy~G~iLiavNPyk~l~-iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIii 99 (697)
T 1lkx_A 21 ENAFIENLTMRHKSDNIYTYIGDVVISTNPFKNLN-IYKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCVII 99 (697)
T ss_dssp HHHHHHHHHHHHHTTCCEEESSSCEEEECCSSCCS-CCSHHHHHHHSSCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred HHHHHHHHHHHHhcCCcEEeeCCeEEEEcCCcCCC-CCCHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHhcCCCcEEEe
Confidence 46788888876642211111111111112344443 345666666543332222 333445555554 3457999
Q ss_pred EecCCchhHHHHHH
Q 002135 276 ATMTSSGKSLCYNL 289 (961)
Q Consensus 276 ~apTGSGKTla~~L 289 (961)
++.+|||||.+.-+
T Consensus 100 sGESGAGKTe~tK~ 113 (697)
T 1lkx_A 100 SGESGAGKTEASKK 113 (697)
T ss_dssp ECSTTSSHHHHHHH
T ss_pred cCCCCCCchhhHHH
Confidence 99999999998643
No 392
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=29.43 E-value=23 Score=36.53 Aligned_cols=18 Identities=22% Similarity=0.226 Sum_probs=15.8
Q ss_pred CCCcEEEEecCCchhHHH
Q 002135 269 AGKNVVVATMTSSGKSLC 286 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla 286 (961)
.|+-+.+.+|+|||||..
T Consensus 27 ~Ge~~~i~G~nGsGKSTL 44 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTI 44 (243)
T ss_dssp TTEEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577899999999999974
No 393
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=29.43 E-value=24 Score=37.36 Aligned_cols=19 Identities=21% Similarity=0.167 Sum_probs=16.3
Q ss_pred hCCCcEEEEecCCchhHHH
Q 002135 268 LAGKNVVVATMTSSGKSLC 286 (961)
Q Consensus 268 l~G~~vIv~apTGSGKTla 286 (961)
..|.-+.+.+|+|||||..
T Consensus 32 ~~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp ETTSEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3578899999999999974
No 394
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=29.32 E-value=29 Score=34.77 Aligned_cols=20 Identities=15% Similarity=0.104 Sum_probs=16.4
Q ss_pred CCCcEEEEecCCchhHHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~ 288 (961)
.+..+++.++.|||||...-
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~ 22 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAP 22 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35678999999999998654
No 395
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=29.30 E-value=38 Score=40.01 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=19.4
Q ss_pred HHhCCCcEEEEecCCchhHHHHH
Q 002135 266 ASLAGKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 266 ~il~G~~vIv~apTGSGKTla~~ 288 (961)
.+..|+.+++.+|+|+|||..+.
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtlar 78 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLGQ 78 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHHHH
Confidence 35678999999999999998653
No 396
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=29.30 E-value=93 Score=33.57 Aligned_cols=76 Identities=11% Similarity=0.042 Sum_probs=51.6
Q ss_pred CCCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEeccc-c-----cccc
Q 002135 524 HGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNA-L-----ELGI 597 (961)
Q Consensus 524 ~g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~a-L-----e~GI 597 (961)
.+.++|+.|+++..++.+.+.+++... .....+..++|+.+..+...... ..+++|+|.- + ...+
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~ 158 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAF----HMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRF 158 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTT----TSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSS
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhc----cCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCc
Confidence 356999999999999988887765432 23456888999988776555443 3579999952 1 1234
Q ss_pred ccCCccEEEEe
Q 002135 598 DVGHIDVTLHL 608 (961)
Q Consensus 598 DIp~vd~VI~~ 608 (961)
+...+++||.-
T Consensus 159 ~~~~~~~vIiD 169 (394)
T 1fuu_A 159 RTDKIKMFILD 169 (394)
T ss_dssp CCTTCCEEEEE
T ss_pred chhhCcEEEEE
Confidence 45566776643
No 397
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=29.18 E-value=22 Score=39.26 Aligned_cols=17 Identities=29% Similarity=0.311 Sum_probs=14.0
Q ss_pred CcEEEEecCCchhHHHH
Q 002135 271 KNVVVATMTSSGKSLCY 287 (961)
Q Consensus 271 ~~vIv~apTGSGKTla~ 287 (961)
.-.+++++||+|||...
T Consensus 26 gl~vi~G~NGaGKT~il 42 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 34789999999999863
No 398
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=29.15 E-value=28 Score=35.98 Aligned_cols=20 Identities=15% Similarity=0.174 Sum_probs=16.5
Q ss_pred CCCcEEEEecCCchhHHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~ 288 (961)
.|..+.+.+|+|||||...-
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k 45 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCK 45 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46678999999999998643
No 399
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=29.12 E-value=93 Score=38.07 Aligned_cols=58 Identities=14% Similarity=0.012 Sum_probs=45.7
Q ss_pred CCCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEecc
Q 002135 524 HGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATN 591 (961)
Q Consensus 524 ~g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~ 591 (961)
.|..++|.|+|+.-|...++.+...... ++-.+.++.||++.++|+... ...|+++|+
T Consensus 123 ~g~~vlVltptreLA~qd~e~~~~l~~~----lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTp 180 (844)
T 1tf5_A 123 TGKGVHVVTVNEYLASRDAEQMGKIFEF----LGLTVGLNLNSMSKDEKREAY------AADITYSTN 180 (844)
T ss_dssp TSSCEEEEESSHHHHHHHHHHHHHHHHH----TTCCEEECCTTSCHHHHHHHH------HSSEEEEEH
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHHHhh----cCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 4678999999999999988887765433 455788899999988776543 268999998
No 400
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=29.03 E-value=26 Score=33.84 Aligned_cols=18 Identities=28% Similarity=0.152 Sum_probs=14.8
Q ss_pred CcEEEEecCCchhHHHHH
Q 002135 271 KNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 271 ~~vIv~apTGSGKTla~~ 288 (961)
+.++++++.|||||....
T Consensus 7 ~~I~l~G~~GsGKsT~~~ 24 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCA 24 (194)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 358899999999998654
No 401
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=28.92 E-value=26 Score=34.70 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=17.2
Q ss_pred CCCcEEEEecCCchhHHHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCYNL 289 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~L 289 (961)
.+..++++++.|||||...-.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~ 28 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRK 28 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 467799999999999986543
No 402
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=28.81 E-value=27 Score=37.79 Aligned_cols=19 Identities=21% Similarity=0.287 Sum_probs=16.0
Q ss_pred CcEEEEecCCchhHHHHHH
Q 002135 271 KNVVVATMTSSGKSLCYNL 289 (961)
Q Consensus 271 ~~vIv~apTGSGKTla~~L 289 (961)
.++++.+|+|+|||..+.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ 70 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHI 70 (334)
T ss_dssp CCEEEESSTTSSHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHH
Confidence 6899999999999986543
No 403
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.56 E-value=44 Score=37.80 Aligned_cols=19 Identities=26% Similarity=0.312 Sum_probs=16.2
Q ss_pred CCcEEEEecCCchhHHHHH
Q 002135 270 GKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~~ 288 (961)
.+.+++.+|+|+|||+.+-
T Consensus 215 prGvLL~GPPGtGKTllAk 233 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAK 233 (437)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 3789999999999998653
No 404
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=28.52 E-value=77 Score=40.38 Aligned_cols=70 Identities=9% Similarity=0.042 Sum_probs=51.5
Q ss_pred HHHHCCCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEec-----cccc
Q 002135 520 EMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAAT-----NALE 594 (961)
Q Consensus 520 ~l~~~g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT-----~aLe 594 (961)
.....+.++|+-++++..+...++.+++.+. .+..++|+.+ .+++.+|+|+| +.+.
T Consensus 222 ~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~--------~VglltGd~~-----------~~~~~~IlV~Tpe~L~~~L~ 282 (1108)
T 3l9o_A 222 QSLKNKQRVIYTSPIKALSNQKYRELLAEFG--------DVGLMTGDIT-----------INPDAGCLVMTTEILRSMLY 282 (1108)
T ss_dssp HHHHTTCEEEEEESSHHHHHHHHHHHHHHTS--------SEEEECSSCB-----------CCCSCSEEEEEHHHHHHHHH
T ss_pred HHHhcCCeEEEEcCcHHHHHHHHHHHHHHhC--------CccEEeCccc-----------cCCCCCEEEeChHHHHHHHH
Confidence 3346788999999999999999888877432 5778899876 34678999999 4555
Q ss_pred cccc-cCCccEEEEe
Q 002135 595 LGID-VGHIDVTLHL 608 (961)
Q Consensus 595 ~GID-Ip~vd~VI~~ 608 (961)
.|-. +.++++||.-
T Consensus 283 ~~~~~l~~l~lVVID 297 (1108)
T 3l9o_A 283 RGSEVMREVAWVIFD 297 (1108)
T ss_dssp HCSSHHHHEEEEEEE
T ss_pred cCccccccCCEEEEh
Confidence 5433 5667777743
No 405
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=28.47 E-value=31 Score=39.71 Aligned_cols=48 Identities=19% Similarity=0.162 Sum_probs=26.7
Q ss_pred CCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEE-ccc-HHHHHHHHHH
Q 002135 270 GKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYM-FPT-KALAQDQLRA 319 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl-~Pt-raLa~qq~~~ 319 (961)
|.-+.+++++|||||...-. +..+....++++++. ..+ +.-+.+|...
T Consensus 293 GeVI~LVGpNGSGKTTLl~~--LAgll~~~~G~V~l~g~D~~r~aa~eQL~~ 342 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGK--LARQFEQQGKSVMLAAGDTFRAAAVEQLQV 342 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHH--HHHHHHHTTCCEEEECCCTTCHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHH--HHHHhhhcCCeEEEecCcccchhhHHHHHH
Confidence 34578999999999975432 333332234566665 333 3334444443
No 406
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=28.37 E-value=20 Score=35.32 Aligned_cols=20 Identities=25% Similarity=0.245 Sum_probs=16.4
Q ss_pred CCCcEEEEecCCchhHHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~ 288 (961)
.|..+++.++.|||||...-
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~ 22 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQAT 22 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHH
Confidence 45678999999999998654
No 407
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=28.18 E-value=24 Score=34.04 Aligned_cols=17 Identities=24% Similarity=0.243 Sum_probs=14.2
Q ss_pred cEEEEecCCchhHHHHH
Q 002135 272 NVVVATMTSSGKSLCYN 288 (961)
Q Consensus 272 ~vIv~apTGSGKTla~~ 288 (961)
.++++++.|||||....
T Consensus 3 ~I~i~G~~GsGKsT~~~ 19 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLA 19 (194)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997654
No 408
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=28.03 E-value=21 Score=34.39 Aligned_cols=21 Identities=10% Similarity=0.003 Sum_probs=12.4
Q ss_pred CCCcEEEEecCCchhHHHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCYNL 289 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~L 289 (961)
.+..++++++.|||||...-.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~ 24 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHT 24 (183)
T ss_dssp -CCEEEEECCC----CHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 356789999999999986543
No 409
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=28.03 E-value=30 Score=39.50 Aligned_cols=28 Identities=7% Similarity=-0.027 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHhhccc-eechhhhHHH
Q 002135 22 EAFAFVSIFSAHLQLRRE-KVILSHVKGA 49 (961)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 49 (961)
++.++|+.-...+..++| .|+-+||=-+
T Consensus 9 ~a~~al~~A~~~A~~~~h~~v~~eHLLla 37 (468)
T 3pxg_A 9 RAQKVLALAQEEALRLGHNNIGTEHILLG 37 (468)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCcccHHHHHHH
Confidence 566778888888999998 6665555333
No 410
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=27.94 E-value=37 Score=33.52 Aligned_cols=19 Identities=21% Similarity=0.200 Sum_probs=15.0
Q ss_pred CCcEEEEecCCchhHHHHH
Q 002135 270 GKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~~ 288 (961)
+.-+.+++++|||||...-
T Consensus 22 ~~~i~i~G~~GsGKstl~~ 40 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLAN 40 (201)
T ss_dssp SEEEEEEECTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3458899999999997543
No 411
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=27.93 E-value=63 Score=39.24 Aligned_cols=86 Identities=9% Similarity=0.081 Sum_probs=46.4
Q ss_pred hHHHHHHHHccCCCCCceEEeeecCCcccccccCCccccHHHHHHHHhCCCCCC----cHHHHHHHHHHh---CCCcEEE
Q 002135 203 PLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKL----YSHQAESIMASL---AGKNVVV 275 (961)
Q Consensus 203 ~~~~~~~lr~~~~~~~~iv~~~~~p~~~~~f~~l~~~L~~~l~~~L~~~g~~~l----~~~Q~~ai~~il---~G~~vIv 275 (961)
.+.++..|+..+.....-+..-.+=--..+|..++ --+++.++..+......+ +.+=..|...++ ..+.+||
T Consensus 99 E~svL~nL~~Ry~~~~IYTy~G~iLvavNPyk~l~-iY~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIii 177 (770)
T 1w9i_A 99 EPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIP-IYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLI 177 (770)
T ss_dssp HHHHHHHHHHHHHTTCCEEEETTEEEEECCSSCCS-CCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred HHHHHHHHHHHHhcCCceeccCceeEEecCCcccc-CCCHHHHHHhcCCCcCCCCccHHHHHHHHHHHHHhhcCCcEEEE
Confidence 46788888877643211111111111112344443 345666666654333333 333345555554 3457999
Q ss_pred EecCCchhHHHHHH
Q 002135 276 ATMTSSGKSLCYNL 289 (961)
Q Consensus 276 ~apTGSGKTla~~L 289 (961)
++.+|+|||.+.-.
T Consensus 178 sGESGAGKTe~tK~ 191 (770)
T 1w9i_A 178 TGESGAGKTENTKK 191 (770)
T ss_dssp ECSTTSSHHHHHHH
T ss_pred ecCCCCcchHHHHH
Confidence 99999999988644
No 412
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=27.76 E-value=33 Score=34.33 Aligned_cols=18 Identities=22% Similarity=0.218 Sum_probs=14.7
Q ss_pred cEEEEecCCchhHHHHHH
Q 002135 272 NVVVATMTSSGKSLCYNL 289 (961)
Q Consensus 272 ~vIv~apTGSGKTla~~L 289 (961)
-.+++++.|||||.....
T Consensus 7 i~l~tG~pGsGKT~~a~~ 24 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVS 24 (199)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHH
Confidence 468999999999986543
No 413
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=27.73 E-value=86 Score=34.28 Aligned_cols=54 Identities=20% Similarity=0.250 Sum_probs=42.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhHhhCCCCccEEEEcCCCcHHHHHHHh-----cCCcEEEeCh
Q 002135 300 SSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLR-----DNARLLITNP 359 (961)
Q Consensus 300 ~~~aLvl~PtraLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~~~r~~l~-----~~~~IlItTP 359 (961)
..++|+.++++.-+....+.+.+. ++.+..++|+.+..+|..+. ...+|+|+|.
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~ 334 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREA------NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD 334 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT------TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhC------CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC
Confidence 568999999999988888777663 35688899999887775432 3478999995
No 414
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=27.65 E-value=29 Score=36.29 Aligned_cols=17 Identities=24% Similarity=0.245 Sum_probs=14.6
Q ss_pred CcEEEEecCCchhHHHH
Q 002135 271 KNVVVATMTSSGKSLCY 287 (961)
Q Consensus 271 ~~vIv~apTGSGKTla~ 287 (961)
+.+++.+|+|+|||...
T Consensus 74 ~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcChHHHHH
Confidence 45999999999999754
No 415
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=27.29 E-value=32 Score=33.77 Aligned_cols=16 Identities=19% Similarity=0.160 Sum_probs=13.8
Q ss_pred cEEEEecCCchhHHHH
Q 002135 272 NVVVATMTSSGKSLCY 287 (961)
Q Consensus 272 ~vIv~apTGSGKTla~ 287 (961)
.+.++++.|||||...
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 5789999999999854
No 416
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=27.23 E-value=27 Score=37.51 Aligned_cols=19 Identities=21% Similarity=0.433 Sum_probs=16.6
Q ss_pred hCCCcEEEEecCCchhHHH
Q 002135 268 LAGKNVVVATMTSSGKSLC 286 (961)
Q Consensus 268 l~G~~vIv~apTGSGKTla 286 (961)
..|+-+.+++|+|||||..
T Consensus 78 ~~Ge~vaivG~sGsGKSTL 96 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTI 96 (306)
T ss_dssp CTTCEEEEESSSCHHHHHH
T ss_pred cCCCEEEEECCCCchHHHH
Confidence 3678899999999999974
No 417
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=27.17 E-value=42 Score=32.71 Aligned_cols=15 Identities=27% Similarity=0.146 Sum_probs=12.6
Q ss_pred cEEEEecCCchhHHH
Q 002135 272 NVVVATMTSSGKSLC 286 (961)
Q Consensus 272 ~vIv~apTGSGKTla 286 (961)
-+.++++.|||||..
T Consensus 6 ~i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL 20 (169)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467889999999974
No 418
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=26.99 E-value=32 Score=33.61 Aligned_cols=16 Identities=13% Similarity=0.304 Sum_probs=13.6
Q ss_pred cEEEEecCCchhHHHH
Q 002135 272 NVVVATMTSSGKSLCY 287 (961)
Q Consensus 272 ~vIv~apTGSGKTla~ 287 (961)
.+.+.+|.|||||...
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999754
No 419
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=26.91 E-value=28 Score=36.60 Aligned_cols=19 Identities=32% Similarity=0.356 Sum_probs=16.3
Q ss_pred hCCCcEEEEecCCchhHHH
Q 002135 268 LAGKNVVVATMTSSGKSLC 286 (961)
Q Consensus 268 l~G~~vIv~apTGSGKTla 286 (961)
..|+-+.+.+|.|||||..
T Consensus 43 ~~Ge~~~i~G~nGsGKSTL 61 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTV 61 (271)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3678899999999999973
No 420
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=26.86 E-value=28 Score=36.19 Aligned_cols=19 Identities=26% Similarity=0.254 Sum_probs=16.3
Q ss_pred hCCCcEEEEecCCchhHHH
Q 002135 268 LAGKNVVVATMTSSGKSLC 286 (961)
Q Consensus 268 l~G~~vIv~apTGSGKTla 286 (961)
..|.-+.+.+|.|||||..
T Consensus 31 ~~Ge~~~liG~nGsGKSTL 49 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTL 49 (257)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred eCCCEEEEECCCCCCHHHH
Confidence 3678899999999999973
No 421
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=26.85 E-value=27 Score=34.05 Aligned_cols=17 Identities=18% Similarity=0.237 Sum_probs=13.7
Q ss_pred cEEEEecCCchhHHHHH
Q 002135 272 NVVVATMTSSGKSLCYN 288 (961)
Q Consensus 272 ~vIv~apTGSGKTla~~ 288 (961)
-+.+++++|||||....
T Consensus 4 ~v~IvG~SGsGKSTL~~ 20 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLIT 20 (171)
T ss_dssp EEEEEESCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46789999999997543
No 422
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=26.72 E-value=34 Score=33.80 Aligned_cols=19 Identities=16% Similarity=0.270 Sum_probs=15.5
Q ss_pred CCcEEEEecCCchhHHHHH
Q 002135 270 GKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~~ 288 (961)
|..+.+.+|+|+|||...-
T Consensus 1 G~~i~i~G~nG~GKTTll~ 19 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIH 19 (189)
T ss_dssp CCCEEEESCCSSCHHHHHH
T ss_pred CCEEEEECCCCChHHHHHH
Confidence 4678899999999997543
No 423
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=26.71 E-value=33 Score=33.51 Aligned_cols=17 Identities=24% Similarity=0.151 Sum_probs=14.3
Q ss_pred cEEEEecCCchhHHHHH
Q 002135 272 NVVVATMTSSGKSLCYN 288 (961)
Q Consensus 272 ~vIv~apTGSGKTla~~ 288 (961)
.+.+++++|||||...-
T Consensus 10 ~I~i~G~~GsGKST~~~ 26 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAA 26 (203)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999998653
No 424
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=32.59 E-value=14 Score=35.71 Aligned_cols=54 Identities=11% Similarity=0.140 Sum_probs=39.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhHhhCCCCccEEEEcCCCcHHHHHHHh-----cCCcEEEeC
Q 002135 299 LSSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLR-----DNARLLITN 358 (961)
Q Consensus 299 ~~~~aLvl~PtraLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~~~r~~l~-----~~~~IlItT 358 (961)
.+.++|+.++++.-+....+.|... ++.+..++|+.+..+|.... ...+|+|+|
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~------~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT 87 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREA------GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 87 (170)
Confidence 3568999999998888877777653 35677888988777665432 236788888
No 425
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=26.52 E-value=34 Score=34.65 Aligned_cols=21 Identities=19% Similarity=0.134 Sum_probs=16.9
Q ss_pred CCCcEEEEecCCchhHHHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCYNL 289 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~L 289 (961)
.+..+++.++.|||||.....
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~ 35 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPK 35 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 346799999999999986543
No 426
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=26.36 E-value=36 Score=34.09 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=15.8
Q ss_pred CCcEEEEecCCchhHHHHH
Q 002135 270 GKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~~ 288 (961)
+..+++.++.|||||....
T Consensus 5 ~~~I~l~G~~GsGKsT~a~ 23 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCE 23 (217)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4578999999999998654
No 427
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=25.99 E-value=55 Score=33.54 Aligned_cols=28 Identities=18% Similarity=0.285 Sum_probs=20.0
Q ss_pred CCC-cEEEEecCCchhHHHHHHHHHHHHh
Q 002135 269 AGK-NVVVATMTSSGKSLCYNLPVLEALS 296 (961)
Q Consensus 269 ~G~-~vIv~apTGSGKTla~~Lpil~~l~ 296 (961)
.|+ ++++.++.|+|||...+--+.....
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~ 32 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLR 32 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 344 6899999999999886544444433
No 428
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=25.99 E-value=31 Score=39.19 Aligned_cols=18 Identities=11% Similarity=0.189 Sum_probs=15.5
Q ss_pred CcEEEEecCCchhHHHHH
Q 002135 271 KNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 271 ~~vIv~apTGSGKTla~~ 288 (961)
.++++.+|+|+|||..+.
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 479999999999998654
No 429
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=25.87 E-value=27 Score=34.35 Aligned_cols=17 Identities=18% Similarity=0.126 Sum_probs=14.3
Q ss_pred CcEEEEecCCchhHHHH
Q 002135 271 KNVVVATMTSSGKSLCY 287 (961)
Q Consensus 271 ~~vIv~apTGSGKTla~ 287 (961)
..++++++.|||||...
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35889999999999864
No 430
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=25.71 E-value=31 Score=36.10 Aligned_cols=18 Identities=33% Similarity=0.431 Sum_probs=15.8
Q ss_pred CCCcEEEEecCCchhHHH
Q 002135 269 AGKNVVVATMTSSGKSLC 286 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla 286 (961)
.|.-+.+.+|.|||||..
T Consensus 31 ~Ge~~~liG~nGsGKSTL 48 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTF 48 (262)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577889999999999974
No 431
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=25.63 E-value=31 Score=36.17 Aligned_cols=19 Identities=42% Similarity=0.410 Sum_probs=16.3
Q ss_pred hCCCcEEEEecCCchhHHH
Q 002135 268 LAGKNVVVATMTSSGKSLC 286 (961)
Q Consensus 268 l~G~~vIv~apTGSGKTla 286 (961)
..|+-+.+.+|.|||||..
T Consensus 48 ~~Gei~~liG~NGsGKSTL 66 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTF 66 (263)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEEcCCCCcHHHH
Confidence 3678899999999999974
No 432
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=25.58 E-value=63 Score=39.70 Aligned_cols=86 Identities=9% Similarity=0.091 Sum_probs=46.7
Q ss_pred hHHHHHHHHccCCCCCceEEeeecCCcccccccCCccccHHHHHHHHhCCCCCC----cHHHHHHHHHHhC---CCcEEE
Q 002135 203 PLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKL----YSHQAESIMASLA---GKNVVV 275 (961)
Q Consensus 203 ~~~~~~~lr~~~~~~~~iv~~~~~p~~~~~f~~l~~~L~~~l~~~L~~~g~~~l----~~~Q~~ai~~il~---G~~vIv 275 (961)
.+.++..|+..+.....-+..-.+=--..+|..++ --+++.++..+......+ +.+=..|...++. .+.+||
T Consensus 96 E~svL~nL~~Ry~~~~IYTy~G~iLiavNPyk~l~-iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIii 174 (837)
T 1kk8_A 96 EASVLYNLRSRYTSGLIYTYSGLFCIAVNPYRRLP-IYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLI 174 (837)
T ss_dssp HHHHHHHHHHHHHTTCCEEEETTEEEEECCSSCCS-TTSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTSEEEEEE
T ss_pred HHHHHHHHHHHHhcCCceeeccceeEEeCCCcCCC-CCCHHHHHHhcCCCcCCCCCcHHHHHHHHHHHHHhcCCCcEEEE
Confidence 46788888877643211111111111112344454 346666666654333233 3333455555543 356999
Q ss_pred EecCCchhHHHHHH
Q 002135 276 ATMTSSGKSLCYNL 289 (961)
Q Consensus 276 ~apTGSGKTla~~L 289 (961)
++.+|||||.+.-+
T Consensus 175 SGESGAGKTe~tK~ 188 (837)
T 1kk8_A 175 TGESGAGKTENTKK 188 (837)
T ss_dssp ECSTTSSHHHHHHH
T ss_pred eCCCCCCchhhHHH
Confidence 99999999998643
No 433
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=25.52 E-value=31 Score=32.63 Aligned_cols=17 Identities=24% Similarity=0.258 Sum_probs=14.3
Q ss_pred cEEEEecCCchhHHHHH
Q 002135 272 NVVVATMTSSGKSLCYN 288 (961)
Q Consensus 272 ~vIv~apTGSGKTla~~ 288 (961)
.++++++.|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGS 18 (168)
T ss_dssp EEEEESCTTSCHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 47899999999998653
No 434
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=25.39 E-value=31 Score=34.08 Aligned_cols=17 Identities=29% Similarity=0.151 Sum_probs=13.9
Q ss_pred cEEEEecCCchhHHHHH
Q 002135 272 NVVVATMTSSGKSLCYN 288 (961)
Q Consensus 272 ~vIv~apTGSGKTla~~ 288 (961)
.+.++++.|||||...-
T Consensus 4 ~i~l~G~~GsGKST~~~ 20 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIAN 20 (206)
T ss_dssp EEEEECSTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46789999999998653
No 435
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=25.21 E-value=36 Score=33.95 Aligned_cols=17 Identities=12% Similarity=0.208 Sum_probs=14.4
Q ss_pred cEEEEecCCchhHHHHH
Q 002135 272 NVVVATMTSSGKSLCYN 288 (961)
Q Consensus 272 ~vIv~apTGSGKTla~~ 288 (961)
++++.++.|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQ 18 (214)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998654
No 436
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=25.19 E-value=84 Score=39.82 Aligned_cols=86 Identities=9% Similarity=0.127 Sum_probs=47.2
Q ss_pred hHHHHHHHHccC-CCCCceEEeeecCCcccccccCCccccHHHHHHHHhCCCCCCc----HHHHHHHHHHh---CCCcEE
Q 002135 203 PLEMVEHLRKGI-GSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKLY----SHQAESIMASL---AGKNVV 274 (961)
Q Consensus 203 ~~~~~~~lr~~~-~~~~~iv~~~~~p~~~~~f~~l~~~L~~~l~~~L~~~g~~~l~----~~Q~~ai~~il---~G~~vI 274 (961)
.+.++..|+..+ ......+..-.+=--..+|..+| --+++.+...+......+- .+=..|...++ .++.+|
T Consensus 82 e~~vl~nL~~Ry~~~~~iYTy~G~iLiavNPyk~l~-iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIi 160 (1080)
T 2dfs_A 82 EPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYEQLP-IYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSII 160 (1080)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEETTEEEEECCSSCCS-CSSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEE
T ss_pred hHHHHHHHHHHHHhcCCchhccCceeEEecCCcccc-cCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHhcCCCcEEE
Confidence 478888888877 42211111111111112344443 3456766666543333333 33345555554 345799
Q ss_pred EEecCCchhHHHHHH
Q 002135 275 VATMTSSGKSLCYNL 289 (961)
Q Consensus 275 v~apTGSGKTla~~L 289 (961)
|++.+|||||.+.-+
T Consensus 161 isGESGAGKTe~~K~ 175 (1080)
T 2dfs_A 161 VSGESGAGKTVSAKY 175 (1080)
T ss_dssp EECSTTSSHHHHHHH
T ss_pred EcCCCCCCccchHHH
Confidence 999999999988644
No 437
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=25.06 E-value=68 Score=34.11 Aligned_cols=49 Identities=12% Similarity=0.034 Sum_probs=28.6
Q ss_pred CCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEc--ccHHHHHHHHHHH
Q 002135 270 GKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMF--PTKALAQDQLRAL 320 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~--PtraLa~qq~~~l 320 (961)
++-+++++++|+|||.....-+.. +.. .+.+++++. +.+..+.+|.+.+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~-~~~-~g~~v~l~~~D~~r~~a~~ql~~~ 148 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF-YKK-KGFKVGLVGADVYRPAALEQLQQL 148 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH-HHH-TTCCEEEEECCCSSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-HHH-CCCeEEEEecCCCCHHHHHHHHHH
Confidence 556788899999999755433322 222 245555543 4555666555443
No 438
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=25.02 E-value=34 Score=35.07 Aligned_cols=21 Identities=14% Similarity=0.003 Sum_probs=16.7
Q ss_pred CCCcEEEEecCCchhHHHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCYNL 289 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~L 289 (961)
.+..+++++|.|||||.....
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~ 48 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLN 48 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 345799999999999986543
No 439
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=25.00 E-value=28 Score=36.58 Aligned_cols=17 Identities=29% Similarity=0.356 Sum_probs=14.6
Q ss_pred CcEEEEecCCchhHHHH
Q 002135 271 KNVVVATMTSSGKSLCY 287 (961)
Q Consensus 271 ~~vIv~apTGSGKTla~ 287 (961)
+.+++.+|.|+|||..+
T Consensus 45 ~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp SEEEEESSTTSCHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 45999999999999754
No 440
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=24.80 E-value=57 Score=34.78 Aligned_cols=18 Identities=22% Similarity=0.126 Sum_probs=14.4
Q ss_pred CCcEEEEecCCchhHHHH
Q 002135 270 GKNVVVATMTSSGKSLCY 287 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~ 287 (961)
|.-+.+++|+|||||...
T Consensus 80 g~iigI~G~~GsGKSTl~ 97 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTA 97 (308)
T ss_dssp CEEEEEEECTTSSHHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 345778999999999754
No 441
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=24.68 E-value=76 Score=35.68 Aligned_cols=54 Identities=9% Similarity=0.190 Sum_probs=36.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhHhhCCCCccEEEEcCCCcHHHHHHHhc-CCcEEEeCh
Q 002135 300 SSSALYMFPTKALAQDQLRALLAMTKAFDASIDIGVYDGDTTQKDRMWLRD-NARLLITNP 359 (961)
Q Consensus 300 ~~~aLvl~PtraLa~qq~~~l~~l~~~~~~~i~v~~~~Gd~~~~~r~~l~~-~~~IlItTP 359 (961)
+.++|+++|+++-+...++.|++. ++.+..++|+.........++ ..+|+|+|.
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~------~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~ 231 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA------GKSVVVLNRKTFEREYPTIKQKKPDFILATD 231 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT------TCCEEECCSSSCC--------CCCSEEEESS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc------CCCEEEecchhHHHHHhhhcCCCceEEEECC
Confidence 467999999999999888888764 367889999544333333333 478999994
No 442
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=24.58 E-value=1.3e+02 Score=37.06 Aligned_cols=58 Identities=16% Similarity=0.002 Sum_probs=46.1
Q ss_pred CCCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEecc
Q 002135 524 HGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATN 591 (961)
Q Consensus 524 ~g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~ 591 (961)
.|.+++|.|+|+.-|...++.+...... ++-.+.++.||++.++|+... ..+|+++|+
T Consensus 151 ~g~~v~VvTpTreLA~Qdae~m~~l~~~----lGLsv~~i~gg~~~~~r~~~y------~~DIvygTp 208 (922)
T 1nkt_A 151 AGNGVHIVTVNDYLAKRDSEWMGRVHRF----LGLQVGVILATMTPDERRVAY------NADITYGTN 208 (922)
T ss_dssp TTSCEEEEESSHHHHHHHHHHHHHHHHH----TTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred hCCCeEEEeCCHHHHHHHHHHHHHHHhh----cCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 4678999999999999988887765433 455788999999988776654 268999998
No 443
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=24.57 E-value=74 Score=39.97 Aligned_cols=86 Identities=9% Similarity=0.079 Sum_probs=46.9
Q ss_pred hHHHHHHHHccCCCCCceEEeeecCCcccccccCCccccHHHHHHHHhCCCCCC----cHHHHHHHHHHh---CCCcEEE
Q 002135 203 PLEMVEHLRKGIGSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKL----YSHQAESIMASL---AGKNVVV 275 (961)
Q Consensus 203 ~~~~~~~lr~~~~~~~~iv~~~~~p~~~~~f~~l~~~L~~~l~~~L~~~g~~~l----~~~Q~~ai~~il---~G~~vIv 275 (961)
.+.++..|+..+......+..-.+=--..+|..++ --+++++...+......+ +.+=..|...++ ..+.+||
T Consensus 73 e~~vl~nL~~Ry~~~~iYTy~G~ilvavNPyk~l~-iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIii 151 (995)
T 2ycu_A 73 EASVLHNLRERYYSGLIYTYSGLFCVVINPYKQLP-IYTEAIVEMYRGKKRHEVPPHVYAVTEGAYRSMLQDREDQSILC 151 (995)
T ss_dssp HHHHHHHHHHHHHTTCCEEEETTEEEEECCSSCCS-CCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred HHHHHHHHHHHHhcCceeeecCceeeeeCCccccC-CCCHHHHHHhcCCccCCCCchHHHHhHHHHHHHHhcCCCcEEEe
Confidence 46788888877643211111111111112344454 346777666654333233 333345555554 3457999
Q ss_pred EecCCchhHHHHHH
Q 002135 276 ATMTSSGKSLCYNL 289 (961)
Q Consensus 276 ~apTGSGKTla~~L 289 (961)
++.+|||||.+.-+
T Consensus 152 sGESGAGKTe~~K~ 165 (995)
T 2ycu_A 152 TGESGAGKTENTKK 165 (995)
T ss_dssp ECBTTSSHHHHHHH
T ss_pred cCCCCCCchhhHHH
Confidence 99999999988643
No 444
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=24.53 E-value=84 Score=30.61 Aligned_cols=58 Identities=9% Similarity=-0.127 Sum_probs=33.7
Q ss_pred CCcEEEEecChHHHHH-HHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEecc
Q 002135 525 GLRCIAFCRSRKLCEL-VLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATN 591 (961)
Q Consensus 525 g~k~IVF~~sr~~ae~-l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~ 591 (961)
+.++||.|+++..++. +.+.++..... ...+..++|+.....+..... +..+|+|+|.
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~-----~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 140 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKK-----WYRVIGLSGDTQLKISFPEVV----KSCDIIISTA 140 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTT-----TSCEEECCC---CCCCHHHHH----HHCSEEEEEH
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhcc-----CceEEEEeCCcccchhHHhhc----cCCCEEEECH
Confidence 5799999999998887 55555543221 335777787654332211111 1357888886
No 445
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=24.32 E-value=31 Score=35.11 Aligned_cols=18 Identities=33% Similarity=0.381 Sum_probs=15.7
Q ss_pred CCCcEEEEecCCchhHHH
Q 002135 269 AGKNVVVATMTSSGKSLC 286 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla 286 (961)
.|+-+.+.+|.|||||.-
T Consensus 29 ~Ge~~~iiG~nGsGKSTL 46 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTL 46 (224)
T ss_dssp TTCEEEEEECTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577889999999999973
No 446
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=24.31 E-value=36 Score=34.95 Aligned_cols=18 Identities=33% Similarity=0.316 Sum_probs=15.9
Q ss_pred CCCcEEEEecCCchhHHH
Q 002135 269 AGKNVVVATMTSSGKSLC 286 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla 286 (961)
.|+-+.+.+|+|||||..
T Consensus 30 ~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 578899999999999974
No 447
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=24.14 E-value=23 Score=36.66 Aligned_cols=19 Identities=11% Similarity=0.197 Sum_probs=15.4
Q ss_pred CCcEEEEecCCchhHHHHH
Q 002135 270 GKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~~ 288 (961)
+..++++++.|||||..+.
T Consensus 32 ~~~i~l~G~~GsGKSTla~ 50 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHR 50 (253)
T ss_dssp CEEEEEESCGGGTTHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3468999999999998643
No 448
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.06 E-value=24 Score=40.21 Aligned_cols=18 Identities=28% Similarity=0.549 Sum_probs=15.8
Q ss_pred CCcEEEEecCCchhHHHH
Q 002135 270 GKNVVVATMTSSGKSLCY 287 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~ 287 (961)
.+.+++.+|.|+|||+.+
T Consensus 243 prGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CSEEEECSCTTSSHHHHH
T ss_pred CCceEeeCCCCCcHHHHH
Confidence 478999999999999864
No 449
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=24.03 E-value=1e+02 Score=38.14 Aligned_cols=59 Identities=15% Similarity=0.054 Sum_probs=47.5
Q ss_pred CCCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEeccc
Q 002135 524 HGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNA 592 (961)
Q Consensus 524 ~g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~a 592 (961)
.|.+++|.|+|+.-|...++.+..... .++-.+..+.||++.++|+... ..+|+++|+.
T Consensus 119 ~G~qv~VvTPTreLA~Qdae~m~~l~~----~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTpg 177 (997)
T 2ipc_A 119 TGKGVHVVTVNDYLARRDAEWMGPVYR----GLGLSVGVIQHASTPAERRKAY------LADVTYVTNS 177 (997)
T ss_dssp TCSCCEEEESSHHHHHHHHHHHHHHHH----TTTCCEEECCTTCCHHHHHHHH------TSSEEEEEHH
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHHHHH----hcCCeEEEEeCCCCHHHHHHHc------CCCEEEECch
Confidence 577899999999999998888776544 3456788999999988777765 3789999984
No 450
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=23.79 E-value=68 Score=39.18 Aligned_cols=86 Identities=9% Similarity=0.157 Sum_probs=46.0
Q ss_pred hHHHHHHHHccC-CCCCceEEeeecCCcccccccCCccccHHHHHHHHhCCCCCC----cHHHHHHHHHHh---CCCcEE
Q 002135 203 PLEMVEHLRKGI-GSQGQMVHVEDISARKAVLVEIPDALLDNTKSALKSTGISKL----YSHQAESIMASL---AGKNVV 274 (961)
Q Consensus 203 ~~~~~~~lr~~~-~~~~~iv~~~~~p~~~~~f~~l~~~L~~~l~~~L~~~g~~~l----~~~Q~~ai~~il---~G~~vI 274 (961)
.+.++..|+..+ .....-+..-.+=--..+|..++ --+++.++..+......+ +.+=..|...++ ..+.+|
T Consensus 82 E~svL~nL~~Ry~~~~~IYTy~G~iLiavNPyk~l~-iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIi 160 (795)
T 1w7j_A 82 EPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYEQLP-IYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSII 160 (795)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEETTEEEEECCSSCCS-CCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHHHhcccchhccCcceEEecCccccC-cCCHHHHHHHcCCCccCCCccHhHHHHHHHHHhHhcCCCeEEE
Confidence 467888888776 32111111111101112244443 345666666654333333 333445555554 345799
Q ss_pred EEecCCchhHHHHHH
Q 002135 275 VATMTSSGKSLCYNL 289 (961)
Q Consensus 275 v~apTGSGKTla~~L 289 (961)
|++.+|+|||.+.-+
T Consensus 161 isGESGAGKTe~tK~ 175 (795)
T 1w7j_A 161 VSGESGAGKTVSAKY 175 (795)
T ss_dssp EECSTTSSHHHHHHH
T ss_pred EeCCCCCCcchHHHH
Confidence 999999999988644
No 451
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=23.74 E-value=55 Score=37.81 Aligned_cols=38 Identities=13% Similarity=0.320 Sum_probs=25.6
Q ss_pred CCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEc
Q 002135 269 AGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMF 307 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~ 307 (961)
.|.-+.+.+|+|||||.....-++..+.. ++...+++.
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~-~~~g~i~v~ 75 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIE-FDEPGVFVT 75 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHH-HCCCEEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHh-CCCCEEEEE
Confidence 57889999999999998766544444443 123355554
No 452
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=23.68 E-value=35 Score=33.30 Aligned_cols=17 Identities=18% Similarity=0.237 Sum_probs=14.0
Q ss_pred cEEEEecCCchhHHHHH
Q 002135 272 NVVVATMTSSGKSLCYN 288 (961)
Q Consensus 272 ~vIv~apTGSGKTla~~ 288 (961)
.+++.++.|||||...-
T Consensus 2 ~I~i~G~~GsGKsT~~~ 18 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISA 18 (205)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 47899999999998543
No 453
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=23.65 E-value=2.3e+02 Score=34.45 Aligned_cols=63 Identities=8% Similarity=0.165 Sum_probs=46.7
Q ss_pred cCCCCeEEEEcccHHHHHHHHHHHHHhHhhC-----CCCccEEEEcCCCcHHHHHHHhc----------CCcEEEeCh
Q 002135 297 HDLSSSALYMFPTKALAQDQLRALLAMTKAF-----DASIDIGVYDGDTTQKDRMWLRD----------NARLLITNP 359 (961)
Q Consensus 297 ~~~~~~aLvl~PtraLa~qq~~~l~~l~~~~-----~~~i~v~~~~Gd~~~~~r~~l~~----------~~~IlItTP 359 (961)
...+..+||.+|++.-+....+.+.+....+ ..++.+..++|+.+..+|..+.+ ..+|||+|.
T Consensus 300 ~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~ 377 (773)
T 2xau_A 300 TEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN 377 (773)
T ss_dssp HSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT
T ss_pred hcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc
Confidence 3457899999999999999888887643221 23577899999998888765432 247999994
No 454
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=23.65 E-value=49 Score=34.71 Aligned_cols=17 Identities=12% Similarity=0.180 Sum_probs=14.8
Q ss_pred cEEEEecCCchhHHHHH
Q 002135 272 NVVVATMTSSGKSLCYN 288 (961)
Q Consensus 272 ~vIv~apTGSGKTla~~ 288 (961)
++++.+|+|+|||....
T Consensus 40 ~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAI 56 (319)
T ss_dssp CEEEESSSSSSHHHHHH
T ss_pred eEEEECcCCcCHHHHHH
Confidence 69999999999997653
No 455
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=23.64 E-value=36 Score=39.64 Aligned_cols=20 Identities=20% Similarity=0.187 Sum_probs=17.2
Q ss_pred CCCcEEEEecCCchhHHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~ 288 (961)
.|..+++.+|+|+|||..+.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar 126 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAK 126 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 47889999999999998654
No 456
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=23.58 E-value=35 Score=32.94 Aligned_cols=17 Identities=18% Similarity=0.208 Sum_probs=14.0
Q ss_pred cEEEEecCCchhHHHHH
Q 002135 272 NVVVATMTSSGKSLCYN 288 (961)
Q Consensus 272 ~vIv~apTGSGKTla~~ 288 (961)
.++++++.|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~~~ 18 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAK 18 (195)
T ss_dssp EEEEECSTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36899999999998653
No 457
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=23.56 E-value=32 Score=33.43 Aligned_cols=17 Identities=29% Similarity=0.384 Sum_probs=14.0
Q ss_pred EEEEecCCchhHHHHHH
Q 002135 273 VVVATMTSSGKSLCYNL 289 (961)
Q Consensus 273 vIv~apTGSGKTla~~L 289 (961)
+++.++.|||||...-.
T Consensus 3 I~l~G~~GsGKsT~~~~ 19 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQL 19 (197)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67899999999986543
No 458
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.55 E-value=30 Score=39.01 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=15.8
Q ss_pred CCcEEEEecCCchhHHHH
Q 002135 270 GKNVVVATMTSSGKSLCY 287 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~ 287 (961)
.+.+++.+|.|+|||+.+
T Consensus 216 prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CSEEEEESSTTTTHHHHH
T ss_pred CCCCceECCCCchHHHHH
Confidence 368999999999999864
No 459
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=23.52 E-value=39 Score=40.34 Aligned_cols=74 Identities=11% Similarity=-0.011 Sum_probs=48.7
Q ss_pred CcEEEEecChHHHHHH-HHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEecc-cccc--------
Q 002135 526 LRCIAFCRSRKLCELV-LSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATN-ALEL-------- 595 (961)
Q Consensus 526 ~k~IVF~~sr~~ae~l-~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~-aLe~-------- 595 (961)
.++||.++++..+... .+.+++.+.. ...+..++|+.+..++..... +..+|+|+|. .+..
T Consensus 57 ~~vlvl~P~~~L~~Q~~~~~l~~~~~~-----~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~ 127 (699)
T 4gl2_A 57 GKVIVLVNKVLLVEQLFRKEFQPFLKK-----WYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENG 127 (699)
T ss_dssp CCBCCEESCSHHHHHHHHHTHHHHHTT-----TSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC-----
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHcCc-----CceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccccc
Confidence 7899999999999988 8877775432 246889999876654433322 5678999997 3322
Q ss_pred ---ccccCCccEEEEe
Q 002135 596 ---GIDVGHIDVTLHL 608 (961)
Q Consensus 596 ---GIDIp~vd~VI~~ 608 (961)
.+....+++||.-
T Consensus 128 ~~~~~~~~~~~lvViD 143 (699)
T 4gl2_A 128 EDAGVQLSDFSLIIID 143 (699)
T ss_dssp ---CCCGGGCSEEEEE
T ss_pred cccceecccCcEEEEE
Confidence 3466778888743
No 460
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=23.37 E-value=61 Score=34.85 Aligned_cols=18 Identities=11% Similarity=0.109 Sum_probs=15.1
Q ss_pred cEEEEecCCchhHHHHHH
Q 002135 272 NVVVATMTSSGKSLCYNL 289 (961)
Q Consensus 272 ~vIv~apTGSGKTla~~L 289 (961)
++++.+|.|+|||.....
T Consensus 48 ~~ll~Gp~G~GKTtla~~ 65 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVA 65 (340)
T ss_dssp CEEEECSSSSSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 499999999999976543
No 461
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=23.33 E-value=44 Score=40.38 Aligned_cols=26 Identities=38% Similarity=0.469 Sum_probs=20.7
Q ss_pred HHHHHHhCCCc--EEEEecCCchhHHHH
Q 002135 262 ESIMASLAGKN--VVVATMTSSGKSLCY 287 (961)
Q Consensus 262 ~ai~~il~G~~--vIv~apTGSGKTla~ 287 (961)
..+..+++|.| ++.-+.||||||.+.
T Consensus 453 ~~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 453 QLIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCceEEEEccCCCCCchhhcc
Confidence 47788899987 445589999999764
No 462
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=23.31 E-value=33 Score=34.08 Aligned_cols=39 Identities=13% Similarity=0.120 Sum_probs=24.1
Q ss_pred cEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHHHHHHHHH
Q 002135 272 NVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLR 318 (961)
Q Consensus 272 ~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~PtraLa~qq~~ 318 (961)
.+.++++.|||||.+.-.-. ... + +.+..+-.++.+...
T Consensus 14 iIgltG~~GSGKSTva~~L~--~~l---g---~~vid~D~~~~~~~~ 52 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILK--NKY---G---AHVVNVDRIGHEVLE 52 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHH--HHH---C---CEEEEHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH--Hhc---C---CEEEECcHHHHHHHH
Confidence 47789999999998754322 211 2 334556666666554
No 463
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=23.28 E-value=41 Score=34.32 Aligned_cols=20 Identities=20% Similarity=0.120 Sum_probs=16.3
Q ss_pred CCCcEEEEecCCchhHHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~ 288 (961)
.+..+++++|.|||||...-
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k 45 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQ 45 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35689999999999998543
No 464
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=23.09 E-value=33 Score=34.25 Aligned_cols=16 Identities=25% Similarity=0.179 Sum_probs=13.5
Q ss_pred cEEEEecCCchhHHHH
Q 002135 272 NVVVATMTSSGKSLCY 287 (961)
Q Consensus 272 ~vIv~apTGSGKTla~ 287 (961)
-.+|++|+|||||...
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4688999999999764
No 465
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=23.05 E-value=97 Score=34.84 Aligned_cols=50 Identities=20% Similarity=0.193 Sum_probs=29.8
Q ss_pred CCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEc--ccHHHHHHHHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMF--PTKALAQDQLRAL 320 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~--PtraLa~qq~~~l 320 (961)
.++-+.+++++|+|||.....-+.. +. ..+.+++++. +.+..+.+|...+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~-l~-~~g~~Vllvd~D~~r~aa~~qL~~~ 148 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALY-YK-GKGRRPLLVAADTQRPAAREQLRLL 148 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH-HH-TTTCCEEEEECCSSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH-HH-HcCCeEEEeeccccCchhHHHHHHh
Confidence 4566778899999999765433222 22 2355666554 5556665555443
No 466
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=23.04 E-value=42 Score=33.93 Aligned_cols=19 Identities=21% Similarity=0.118 Sum_probs=16.4
Q ss_pred hCCCcEEEEecCCchhHHH
Q 002135 268 LAGKNVVVATMTSSGKSLC 286 (961)
Q Consensus 268 l~G~~vIv~apTGSGKTla 286 (961)
..|+-+.+.+|.|||||..
T Consensus 33 ~~Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp ETTCCEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3678899999999999974
No 467
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=23.03 E-value=55 Score=35.08 Aligned_cols=34 Identities=6% Similarity=-0.012 Sum_probs=22.0
Q ss_pred cEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEccc
Q 002135 272 NVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPT 309 (961)
Q Consensus 272 ~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~Pt 309 (961)
-++++++.|||||...- .+..+ ..+.++.+|.|.
T Consensus 6 v~~i~G~~GaGKTTll~--~l~~~--~~~~~~aVi~~d 39 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLR--HILNE--QHGYKIAVIENE 39 (318)
T ss_dssp EEEEEESSSSSCHHHHH--HHHHS--CCCCCEEEECSS
T ss_pred EEEEEecCCCCHHHHHH--HHHhh--cCCCcEEEEEec
Confidence 47899999999997432 22222 235567777764
No 468
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=22.83 E-value=45 Score=36.70 Aligned_cols=18 Identities=17% Similarity=0.338 Sum_probs=15.7
Q ss_pred CCCcEEEEecCCchhHHH
Q 002135 269 AGKNVVVATMTSSGKSLC 286 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla 286 (961)
.|.-+.+.+|.|||||..
T Consensus 29 ~Ge~~~llGpsGsGKSTL 46 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTL 46 (359)
T ss_dssp TTCEEEEEESTTSSHHHH
T ss_pred CCCEEEEECCCCchHHHH
Confidence 577889999999999973
No 469
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=22.74 E-value=1.1e+02 Score=32.94 Aligned_cols=16 Identities=25% Similarity=0.177 Sum_probs=13.3
Q ss_pred cEEEEecCCchhHHHH
Q 002135 272 NVVVATMTSSGKSLCY 287 (961)
Q Consensus 272 ~vIv~apTGSGKTla~ 287 (961)
-+-+++|+|||||...
T Consensus 94 iigI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3778999999999754
No 470
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=22.54 E-value=94 Score=33.41 Aligned_cols=36 Identities=11% Similarity=0.058 Sum_probs=22.2
Q ss_pred CCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEE
Q 002135 269 AGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYM 306 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl 306 (961)
.++-+.+++++|+|||.....-+.. +.. .+.+++++
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~-l~~-~g~kVlli 139 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANY-YAE-LGYKVLIA 139 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHH-HHH-TTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH-HHH-CCCeEEEE
Confidence 4566888999999999764332221 222 25566655
No 471
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=22.52 E-value=32 Score=39.42 Aligned_cols=18 Identities=22% Similarity=0.386 Sum_probs=15.5
Q ss_pred CcEEEEecCCchhHHHHH
Q 002135 271 KNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 271 ~~vIv~apTGSGKTla~~ 288 (961)
+.+++.+|+|+|||+.+-
T Consensus 50 ~gvLL~GppGtGKT~Lar 67 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLAR 67 (476)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 579999999999998653
No 472
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=22.32 E-value=53 Score=38.51 Aligned_cols=19 Identities=37% Similarity=0.424 Sum_probs=16.7
Q ss_pred hCCCcEEEEecCCchhHHH
Q 002135 268 LAGKNVVVATMTSSGKSLC 286 (961)
Q Consensus 268 l~G~~vIv~apTGSGKTla 286 (961)
..|+-+.+++|+|||||..
T Consensus 367 ~~G~~~~ivG~sGsGKSTl 385 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTI 385 (582)
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3688899999999999974
No 473
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=22.29 E-value=41 Score=35.06 Aligned_cols=19 Identities=32% Similarity=0.357 Sum_probs=16.5
Q ss_pred hCCCcEEEEecCCchhHHH
Q 002135 268 LAGKNVVVATMTSSGKSLC 286 (961)
Q Consensus 268 l~G~~vIv~apTGSGKTla 286 (961)
..|+-+.+.+|+|||||..
T Consensus 44 ~~Ge~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTI 62 (260)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3678899999999999974
No 474
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=22.20 E-value=55 Score=35.34 Aligned_cols=17 Identities=12% Similarity=0.106 Sum_probs=14.5
Q ss_pred cEEEEecCCchhHHHHH
Q 002135 272 NVVVATMTSSGKSLCYN 288 (961)
Q Consensus 272 ~vIv~apTGSGKTla~~ 288 (961)
.+++.+|.|+|||....
T Consensus 40 ~~ll~G~~G~GKT~la~ 56 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIAR 56 (373)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47999999999998654
No 475
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=22.17 E-value=33 Score=47.71 Aligned_cols=21 Identities=14% Similarity=0.295 Sum_probs=18.1
Q ss_pred HhCCCcEEEEecCCchhHHHH
Q 002135 267 SLAGKNVVVATMTSSGKSLCY 287 (961)
Q Consensus 267 il~G~~vIv~apTGSGKTla~ 287 (961)
+..++++++++|||+|||..+
T Consensus 1264 l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHHH
T ss_pred HHCCCeEEEECCCCCCHHHHH
Confidence 446899999999999999864
No 476
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=22.17 E-value=34 Score=35.47 Aligned_cols=19 Identities=16% Similarity=0.172 Sum_probs=15.4
Q ss_pred CCcEEEEecCCchhHHHHH
Q 002135 270 GKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~~ 288 (961)
+..++++++.|||||....
T Consensus 4 ~~lIvl~G~pGSGKSTla~ 22 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSK 22 (260)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHH
Confidence 3468899999999998654
No 477
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=22.16 E-value=42 Score=34.20 Aligned_cols=19 Identities=32% Similarity=0.328 Sum_probs=16.4
Q ss_pred hCCCcEEEEecCCchhHHH
Q 002135 268 LAGKNVVVATMTSSGKSLC 286 (961)
Q Consensus 268 l~G~~vIv~apTGSGKTla 286 (961)
..|+-+.+.+|.|||||..
T Consensus 32 ~~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp ETTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3678899999999999974
No 478
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=22.08 E-value=43 Score=40.69 Aligned_cols=21 Identities=19% Similarity=0.104 Sum_probs=17.3
Q ss_pred CCCcEEEEecCCchhHHHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCYNL 289 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~L 289 (961)
...++++.+|+|+|||..+..
T Consensus 200 ~~~~vLL~G~pGtGKT~la~~ 220 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAEG 220 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHH
Confidence 346899999999999987643
No 479
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=22.02 E-value=39 Score=33.70 Aligned_cols=18 Identities=33% Similarity=0.200 Sum_probs=14.7
Q ss_pred CcEEEEecCCchhHHHHH
Q 002135 271 KNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 271 ~~vIv~apTGSGKTla~~ 288 (961)
..+.++++.|||||...-
T Consensus 5 ~~I~i~G~~GSGKST~~~ 22 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVAN 22 (218)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 357899999999998653
No 480
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=21.54 E-value=50 Score=40.14 Aligned_cols=17 Identities=18% Similarity=0.129 Sum_probs=15.0
Q ss_pred cEEEEecCCchhHHHHH
Q 002135 272 NVVVATMTSSGKSLCYN 288 (961)
Q Consensus 272 ~vIv~apTGSGKTla~~ 288 (961)
++++.+|||+|||..+.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999998764
No 481
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=21.41 E-value=82 Score=33.31 Aligned_cols=73 Identities=14% Similarity=-0.035 Sum_probs=45.3
Q ss_pred CCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHHHHHHHHHHhCCCceEEEecccc------c-ccc
Q 002135 525 GLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAEDRRRIERDFFGGKLCGVAATNAL------E-LGI 597 (961)
Q Consensus 525 g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~eR~~ie~~f~~G~~~vLVAT~aL------e-~GI 597 (961)
+.++||.++|+..|..+++.++...... ....+....|+.....+. ....+|||+|+-- . ..+
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~-------~~~~~IlV~TP~~l~~~l~~~~~~ 231 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFY---PELKLAYAVRGNKLERGQ-------KISEQIVIGTPGTVLDWCSKLKFI 231 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTS---TTCCEEEESTTCCCCTTC-------CCCCSEEEECHHHHHHHHTTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhC---CCcEEEEEeCCccHhhhh-------cCCCCEEEECHHHHHHHHHhcCCC
Confidence 3479999999999999888776643211 123466666665432211 3456799999721 1 245
Q ss_pred ccCCccEEEE
Q 002135 598 DVGHIDVTLH 607 (961)
Q Consensus 598 DIp~vd~VI~ 607 (961)
++..++++|.
T Consensus 232 ~l~~l~~lVl 241 (300)
T 3fmo_B 232 DPKKIKVFVL 241 (300)
T ss_dssp CGGGCSEEEE
T ss_pred ChhhceEEEE
Confidence 6666776663
No 482
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=21.37 E-value=3.3e+02 Score=27.99 Aligned_cols=65 Identities=5% Similarity=0.009 Sum_probs=43.9
Q ss_pred HHHHHHHCCCcEEEEecChHHHHHHHHHHHHHHHhhCCcccccEEEEcCCCCHHH-HHH----HHHHHhCCCceEEEecc
Q 002135 517 LFAEMVQHGLRCIAFCRSRKLCELVLSYTREILEETAPHLVDSICVYRAGYVAED-RRR----IERDFFGGKLCGVAATN 591 (961)
Q Consensus 517 ll~~l~~~g~k~IVF~~sr~~ae~l~~~L~~~l~~~~~~l~~~v~~~hggls~~e-R~~----ie~~f~~G~~~vLVAT~ 591 (961)
+...+.+.|.++++...+.+.++.+++.+++ .+..+..+..+++..+ -++ +.+.| |.+++||..-
T Consensus 23 iA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~--------~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~--G~iDiLVNNA 92 (254)
T 4fn4_A 23 IAKKFALNDSIVVAVELLEDRLNQIVQELRG--------MGKEVLGVKADVSKKKDVEEFVRRTFETY--SRIDVLCNNA 92 (254)
T ss_dssp HHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--------TTCCEEEEECCTTSHHHHHHHHHHHHHHH--SCCCEEEECC
T ss_pred HHHHHHHcCCEEEEEECCHHHHHHHHHHHHh--------cCCcEEEEEccCCCHHHHHHHHHHHHHHc--CCCCEEEECC
Confidence 3445667888888888887777777776654 3446778888886543 222 33333 8899999765
No 483
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=21.33 E-value=47 Score=36.36 Aligned_cols=18 Identities=33% Similarity=0.517 Sum_probs=15.8
Q ss_pred CCCcEEEEecCCchhHHH
Q 002135 269 AGKNVVVATMTSSGKSLC 286 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla 286 (961)
.|.-+.+.+|.|||||..
T Consensus 25 ~Ge~~~llGpnGsGKSTL 42 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLF 42 (348)
T ss_dssp TTCEEEEECCCTHHHHHH
T ss_pred CCCEEEEECCCCccHHHH
Confidence 577889999999999984
No 484
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=21.28 E-value=48 Score=36.41 Aligned_cols=19 Identities=26% Similarity=0.240 Sum_probs=16.3
Q ss_pred hCCCcEEEEecCCchhHHH
Q 002135 268 LAGKNVVVATMTSSGKSLC 286 (961)
Q Consensus 268 l~G~~vIv~apTGSGKTla 286 (961)
..|.-+.+.+|.|||||..
T Consensus 39 ~~Ge~~~llGpnGsGKSTL 57 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTI 57 (355)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCcHHHH
Confidence 3678899999999999974
No 485
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=21.25 E-value=52 Score=39.93 Aligned_cols=17 Identities=24% Similarity=0.161 Sum_probs=15.1
Q ss_pred cEEEEecCCchhHHHHH
Q 002135 272 NVVVATMTSSGKSLCYN 288 (961)
Q Consensus 272 ~vIv~apTGSGKTla~~ 288 (961)
++++.+|||+|||..+.
T Consensus 490 ~~ll~G~~GtGKT~la~ 506 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTV 506 (758)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 69999999999998764
No 486
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=21.22 E-value=45 Score=33.44 Aligned_cols=18 Identities=17% Similarity=0.045 Sum_probs=14.4
Q ss_pred cEEEEecCCchhHHHHHH
Q 002135 272 NVVVATMTSSGKSLCYNL 289 (961)
Q Consensus 272 ~vIv~apTGSGKTla~~L 289 (961)
.+++.+|+||||+..+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~ 19 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKR 19 (206)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478899999999876543
No 487
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=21.16 E-value=48 Score=36.44 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=19.0
Q ss_pred CCCcEEEEecCCchhHHHHHHHHHHHHh
Q 002135 269 AGKNVVVATMTSSGKSLCYNLPVLEALS 296 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~Lpil~~l~ 296 (961)
.|.-+.+.+|.|||||.. +-++..+.
T Consensus 28 ~Ge~~~llGpnGsGKSTL--Lr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTT--LLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHH--HHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHH--HHHHHCCC
Confidence 577889999999999974 33444443
No 488
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=21.00 E-value=1.1e+02 Score=32.33 Aligned_cols=48 Identities=19% Similarity=0.171 Sum_probs=27.0
Q ss_pred CCCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEc--ccHHHHHHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMF--PTKALAQDQLR 318 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~--PtraLa~qq~~ 318 (961)
.|+-+.+++++|+|||.....-+.. +.. .+.+++++- +.+..+..|..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~-~~~-~~~~v~l~~~d~~~~~~~~ql~ 146 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALY-YKG-KGRRPLLVAADTQRPAAREQLR 146 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH-HHH-TTCCEEEEECCSSCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH-HHH-cCCeEEEecCCcccHhHHHHHH
Confidence 4667788899999998654332221 122 245565543 34444444443
No 489
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=20.88 E-value=41 Score=35.71 Aligned_cols=16 Identities=25% Similarity=0.252 Sum_probs=13.2
Q ss_pred cEEEEecCCchhHHHH
Q 002135 272 NVVVATMTSSGKSLCY 287 (961)
Q Consensus 272 ~vIv~apTGSGKTla~ 287 (961)
-+.|++++|||||...
T Consensus 33 ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999754
No 490
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=20.82 E-value=69 Score=30.56 Aligned_cols=19 Identities=16% Similarity=0.027 Sum_probs=15.9
Q ss_pred hCCCcEEEEecCCchhHHH
Q 002135 268 LAGKNVVVATMTSSGKSLC 286 (961)
Q Consensus 268 l~G~~vIv~apTGSGKTla 286 (961)
..|.-+.+.+|.|+|||.-
T Consensus 31 ~~Ge~v~L~G~nGaGKTTL 49 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTL 49 (158)
T ss_dssp SSCEEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4567788999999999974
No 491
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=20.80 E-value=49 Score=36.68 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=19.0
Q ss_pred CCCcEEEEecCCchhHHHHHHHHHHHHh
Q 002135 269 AGKNVVVATMTSSGKSLCYNLPVLEALS 296 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~Lpil~~l~ 296 (961)
.|.-+.+.+|+|||||.. +-++..+.
T Consensus 28 ~Ge~~~llGpsGsGKSTL--Lr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTL--LRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHH--HHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHH--HHHHHcCC
Confidence 577889999999999974 33444443
No 492
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=20.75 E-value=68 Score=33.52 Aligned_cols=50 Identities=12% Similarity=-0.112 Sum_probs=26.6
Q ss_pred CCcEEEEecCCchhHHHHHHHHHHHHhcCCCCeEEEEcccHHHHHHHHHHHHH
Q 002135 270 GKNVVVATMTSSGKSLCYNLPVLEALSHDLSSSALYMFPTKALAQDQLRALLA 322 (961)
Q Consensus 270 G~~vIv~apTGSGKTla~~Lpil~~l~~~~~~~aLvl~PtraLa~qq~~~l~~ 322 (961)
|..+++.+++|+|||...+-.+.+.+.+ +.+++|+.-. +=..+..+.++.
T Consensus 21 gs~~li~g~p~~~~~~l~~qfl~~g~~~--Ge~~~~~~~~-e~~~~l~~~~~~ 70 (260)
T 3bs4_A 21 SLILIHEEDASSRGKDILFYILSRKLKS--DNLVGMFSIS-YPLQLIIRILSR 70 (260)
T ss_dssp CEEEEEECSGGGCHHHHHHHHHHHHHHT--TCEEEEEECS-SCHHHHHHHHHH
T ss_pred CcEEEEEeCCCccHHHHHHHHHHHHHHC--CCcEEEEEEe-CCHHHHHHHHHH
Confidence 4567888677777773333334444443 5677776632 222333444444
No 493
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=20.63 E-value=38 Score=36.75 Aligned_cols=16 Identities=25% Similarity=0.179 Sum_probs=13.4
Q ss_pred cEEEEecCCchhHHHH
Q 002135 272 NVVVATMTSSGKSLCY 287 (961)
Q Consensus 272 ~vIv~apTGSGKTla~ 287 (961)
-.++++|+|||||...
T Consensus 25 ~~~i~G~NGsGKS~ll 40 (339)
T 3qkt_A 25 INLIIGQNGSGKSSLL 40 (339)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4678999999999864
No 494
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=20.59 E-value=95 Score=28.53 Aligned_cols=136 Identities=17% Similarity=0.116 Sum_probs=77.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhccceechhhhHHHHHHhhhcCCccchhhhhhhhhhcCCceEEeecCccccCCCCcEE
Q 002135 14 PVWLKKIVEAFAFVSIFSAHLQLRREKVILSHVKGALNQLEKFGVRVGIEDIENLAVLCPKVVQFANDDMESKNHDDSIV 93 (961)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (961)
|+..++|.++|..+.. -.-+.-.|+.+.++.++..+ |..++.+++.++...+-.. . ..++.+.+. .++
T Consensus 5 ~~~~~~l~~~F~~~D~----~~d~~G~i~~~el~~~l~~l---g~~~~~~~~~~l~~~~d~~-~-g~i~~~eF~---~~~ 72 (159)
T 2ovk_C 5 KDEIEEVREVFDLFDF----WDGRDGDVDAAKVGDLLRCL---GMNPTEAQVHQHGGTKKMG-E-KAYKLEEIL---PIY 72 (159)
T ss_dssp HHHHHHHHHHHHHHHH----HTTSSSEEEGGGHHHHHHHT---TCCCCHHHHHHTTCCSSTT-S-CEEEHHHHH---HHH
T ss_pred HHHHHHHHHHHHHhCC----CCCCCCCCcHHHHHHHHHHc---CCCCCHHHHHHHHHHhcCC-C-CeEcHHHHH---HHH
Confidence 5667788888876541 13455588999999999876 6788888887766554211 0 111111100 000
Q ss_pred --EE-----ecccccccccccccCCCccccCHHHHHHHHHHhhHhhhhhHHHHHHHHHHHH---hhhhcCcCHHHHHHHH
Q 002135 94 --II-----NVSTEERDKVEDNLGSGQKAISLSKIFNAMKKRERSFKTNLWEAVNLLMCKL---QKRVMSLSVEDLLTYV 163 (961)
Q Consensus 94 --~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 163 (961)
.. ....+-+.+|...+.++.+.++.+|+...+..-.....+ +.+..++..+ .+..-.++.++++..+
T Consensus 73 ~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~---~~~~~~~~~~~~D~d~dg~i~~~eF~~~~ 149 (159)
T 2ovk_C 73 EEMSSKDTGTAADEFMEAFKTFDREGQGLISSAEIRNVLKMLGERITE---DQCNDIFTFCDIREDIDGNIKYEDLMKKV 149 (159)
T ss_dssp HHHTTCSTTCCHHHHHHHHHHTCTTSSSEECHHHHHHHHHHSSSCCCH---HHHHHHHHHTTCCCCTTCCEEHHHHHHHH
T ss_pred HHHhhccCCCcHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCH---HHHHHHHHHhcCCCCCCCcEeHHHHHHHH
Confidence 00 000112235666677788999999999998753322211 3345677732 2222235788888776
Q ss_pred h
Q 002135 164 K 164 (961)
Q Consensus 164 ~ 164 (961)
.
T Consensus 150 ~ 150 (159)
T 2ovk_C 150 M 150 (159)
T ss_dssp H
T ss_pred h
Confidence 4
No 495
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=20.56 E-value=42 Score=34.33 Aligned_cols=20 Identities=30% Similarity=0.137 Sum_probs=15.9
Q ss_pred CCCcEEEEecCCchhHHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCYN 288 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~ 288 (961)
.|.-+-+.+|.|||||...-
T Consensus 24 ~g~iigI~G~~GsGKSTl~k 43 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCE 43 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 45567899999999998654
No 496
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=20.50 E-value=53 Score=33.27 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=17.0
Q ss_pred CCCcEEEEecCCchhHHHHHH
Q 002135 269 AGKNVVVATMTSSGKSLCYNL 289 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~L 289 (961)
.+..+.++++.|||||...-.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~ 35 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKI 35 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 456789999999999986543
No 497
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=20.48 E-value=55 Score=35.68 Aligned_cols=40 Identities=13% Similarity=0.004 Sum_probs=24.7
Q ss_pred CCCcEEEEecCCchhHHHHHHHHHHHHhc-CC---CCeEEEEcc
Q 002135 269 AGKNVVVATMTSSGKSLCYNLPVLEALSH-DL---SSSALYMFP 308 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla~~Lpil~~l~~-~~---~~~aLvl~P 308 (961)
.|+-+.+.+|.|||||.....-+...... .. +.+++|+.-
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~ 173 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT 173 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeC
Confidence 45678999999999997654433321111 11 357787754
No 498
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=20.32 E-value=48 Score=34.01 Aligned_cols=18 Identities=22% Similarity=0.350 Sum_probs=15.9
Q ss_pred CCCcEEEEecCCchhHHH
Q 002135 269 AGKNVVVATMTSSGKSLC 286 (961)
Q Consensus 269 ~G~~vIv~apTGSGKTla 286 (961)
.|.-+.+.+|.|||||..
T Consensus 31 ~Ge~~~l~G~nGsGKSTL 48 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTT 48 (240)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577899999999999974
No 499
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=20.28 E-value=49 Score=34.02 Aligned_cols=16 Identities=31% Similarity=0.347 Sum_probs=13.6
Q ss_pred CcEEEEecCCchhHHH
Q 002135 271 KNVVVATMTSSGKSLC 286 (961)
Q Consensus 271 ~~vIv~apTGSGKTla 286 (961)
.-+.+.+|.|||||..
T Consensus 25 e~~~liG~nGsGKSTL 40 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVF 40 (240)
T ss_dssp SEEEEECCTTSSHHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 4577999999999974
No 500
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=20.27 E-value=49 Score=33.29 Aligned_cols=18 Identities=33% Similarity=0.361 Sum_probs=14.6
Q ss_pred cEEEEecCCchhHHHHHH
Q 002135 272 NVVVATMTSSGKSLCYNL 289 (961)
Q Consensus 272 ~vIv~apTGSGKTla~~L 289 (961)
.+++.++.|||||.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNL 19 (223)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999986543
Done!