Query 002136
Match_columns 961
No_of_seqs 394 out of 3175
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 17:19:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002136.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002136hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0525 ValS Valyl-tRNA synthe 100.0 8E-227 2E-231 1970.8 86.7 872 59-954 1-876 (877)
2 KOG0432 Valyl-tRNA synthetase 100.0 9E-212 2E-216 1786.9 80.2 884 56-956 39-994 (995)
3 PLN02943 aminoacyl-tRNA ligase 100.0 3E-201 7E-206 1852.8 95.7 904 53-960 51-957 (958)
4 PLN02381 valyl-tRNA synthetase 100.0 5E-198 1E-202 1830.8 91.7 886 57-958 94-1063(1066)
5 PTZ00419 valyl-tRNA synthetase 100.0 2E-196 4E-201 1830.6 93.9 893 56-957 21-994 (995)
6 PRK05729 valS valyl-tRNA synth 100.0 5E-196 1E-200 1808.6 93.4 866 57-955 3-874 (874)
7 TIGR00422 valS valyl-tRNA synt 100.0 3E-190 6E-195 1758.8 88.6 856 59-937 1-861 (861)
8 PRK14900 valS valyl-tRNA synth 100.0 3E-189 7E-194 1756.0 91.0 877 56-956 12-906 (1052)
9 PRK06039 ileS isoleucyl-tRNA s 100.0 1E-171 2E-176 1598.7 85.8 810 57-885 5-885 (975)
10 PTZ00427 isoleucine-tRNA ligas 100.0 6E-171 1E-175 1586.5 81.9 792 56-859 65-1018(1205)
11 PLN02882 aminoacyl-tRNA ligase 100.0 2E-166 4E-171 1555.1 84.5 785 60-859 5-892 (1159)
12 PRK13208 valS valyl-tRNA synth 100.0 1E-163 3E-168 1508.7 80.9 772 57-859 4-788 (800)
13 PRK13804 ileS isoleucyl-tRNA s 100.0 2E-163 5E-168 1514.3 80.8 771 59-853 20-892 (961)
14 PRK05743 ileS isoleucyl-tRNA s 100.0 9E-164 2E-168 1516.3 76.3 767 59-852 15-851 (912)
15 PLN02843 isoleucyl-tRNA synthe 100.0 4E-162 8E-167 1502.7 78.4 767 63-853 3-895 (974)
16 COG0060 IleS Isoleucyl-tRNA sy 100.0 2E-162 3E-167 1444.4 63.5 753 58-829 13-844 (933)
17 TIGR00392 ileS isoleucyl-tRNA 100.0 2E-159 5E-164 1483.5 72.1 754 59-828 2-848 (861)
18 PLN02959 aminoacyl-tRNA ligase 100.0 6E-143 1E-147 1340.3 74.0 725 56-821 6-925 (1084)
19 TIGR00395 leuS_arch leucyl-tRN 100.0 3E-141 6E-146 1318.2 73.3 716 66-829 2-830 (938)
20 PF00133 tRNA-synt_1: tRNA syn 100.0 7E-141 2E-145 1265.5 38.2 552 70-625 1-601 (601)
21 PRK12300 leuS leucyl-tRNA synt 100.0 1E-133 2E-138 1245.2 69.8 671 105-826 1-783 (897)
22 PLN02563 aminoacyl-tRNA ligase 100.0 6E-132 1E-136 1217.8 56.2 686 49-875 66-957 (963)
23 TIGR00396 leuS_bact leucyl-tRN 100.0 8E-132 2E-136 1217.4 54.8 679 63-874 1-841 (842)
24 KOG0434 Isoleucyl-tRNA synthet 100.0 3E-131 8E-136 1089.6 52.4 786 59-859 4-880 (1070)
25 PRK00390 leuS leucyl-tRNA synt 100.0 1E-130 2E-135 1206.5 57.6 673 60-874 2-804 (805)
26 KOG0433 Isoleucyl-tRNA synthet 100.0 2E-127 4E-132 1072.9 61.9 704 60-794 27-818 (937)
27 COG0495 LeuS Leucyl-tRNA synth 100.0 5E-107 1E-111 961.6 52.5 612 61-789 3-747 (814)
28 KOG0435 Leucyl-tRNA synthetase 100.0 4.2E-97 9E-102 821.9 39.8 614 66-788 34-795 (876)
29 PRK12268 methionyl-tRNA synthe 100.0 1.1E-88 2.5E-93 814.2 42.4 505 90-787 3-521 (556)
30 cd00817 ValRS_core catalytic c 100.0 5.5E-88 1.2E-92 767.3 36.9 377 90-624 1-382 (382)
31 TIGR00398 metG methionyl-tRNA 100.0 9.6E-87 2.1E-91 793.2 46.2 490 92-775 1-504 (530)
32 PRK00133 metG methionyl-tRNA s 100.0 2.3E-84 5.1E-89 786.8 46.5 484 90-774 2-503 (673)
33 PRK12267 methionyl-tRNA synthe 100.0 2.8E-84 6E-89 785.8 44.9 468 89-775 3-479 (648)
34 KOG0437 Leucyl-tRNA synthetase 100.0 8.6E-85 1.9E-89 726.8 36.6 705 62-811 10-905 (1080)
35 PLN02610 probable methionyl-tR 100.0 6.1E-84 1.3E-88 783.4 47.3 494 87-775 14-533 (801)
36 COG0143 MetG Methionyl-tRNA sy 100.0 1E-81 2.2E-86 726.0 43.6 489 89-775 4-513 (558)
37 PRK11893 methionyl-tRNA synthe 100.0 8.2E-81 1.8E-85 741.5 45.6 465 90-775 1-477 (511)
38 PLN02224 methionine-tRNA ligas 100.0 2.4E-80 5.2E-85 731.6 43.9 465 89-775 68-547 (616)
39 cd00818 IleRS_core catalytic c 100.0 2.4E-77 5.3E-82 669.2 33.6 336 90-624 1-338 (338)
40 KOG0436 Methionyl-tRNA synthet 100.0 7.1E-69 1.5E-73 568.7 31.3 470 89-775 38-528 (578)
41 cd00668 Ile_Leu_Val_MetRS_core 100.0 3.7E-67 8.1E-72 583.9 30.7 311 91-624 1-312 (312)
42 PF09334 tRNA-synt_1g: tRNA sy 100.0 1.4E-66 2.9E-71 590.4 17.8 377 92-646 1-390 (391)
43 cd00814 MetRS_core catalytic c 100.0 6.6E-61 1.4E-65 534.3 28.5 313 91-624 1-319 (319)
44 cd00812 LeuRS_core catalytic c 100.0 1.2E-56 2.7E-61 498.0 26.1 297 91-626 1-314 (314)
45 KOG1247 Methionyl-tRNA synthet 100.0 1.9E-52 4.2E-57 443.0 22.2 494 87-775 11-521 (567)
46 PRK00260 cysS cysteinyl-tRNA s 100.0 9.3E-43 2E-47 404.9 29.4 359 80-724 15-375 (463)
47 PTZ00399 cysteinyl-tRNA-synthe 100.0 5.8E-38 1.3E-42 374.2 43.9 380 80-724 52-437 (651)
48 TIGR00435 cysS cysteinyl-tRNA 100.0 1.1E-37 2.3E-42 361.5 29.8 357 80-714 13-371 (465)
49 PRK12418 cysteinyl-tRNA synthe 100.0 4.4E-37 9.5E-42 343.1 20.5 343 91-724 11-363 (384)
50 TIGR03447 mycothiol_MshC cyste 100.0 8.8E-37 1.9E-41 341.7 22.0 341 81-714 31-382 (411)
51 PRK14536 cysS cysteinyl-tRNA s 100.0 3.6E-35 7.8E-40 336.8 26.7 363 92-714 24-399 (490)
52 PLN02946 cysteine-tRNA ligase 100.0 6.7E-34 1.4E-38 329.2 25.5 354 99-724 88-443 (557)
53 PRK14535 cysS cysteinyl-tRNA s 100.0 1.8E-33 4E-38 325.8 23.7 341 92-714 249-607 (699)
54 PRK14534 cysS cysteinyl-tRNA s 100.0 2.2E-32 4.8E-37 312.1 25.9 357 92-714 22-392 (481)
55 PRK01611 argS arginyl-tRNA syn 100.0 2.6E-30 5.5E-35 305.2 34.8 202 541-762 275-504 (507)
56 cd00672 CysRS_core catalytic c 100.0 1.4E-31 3.1E-36 278.7 18.5 86 539-625 128-213 (213)
57 cd00674 LysRS_core_class_I cat 100.0 2.3E-28 5E-33 270.7 22.5 125 89-223 18-150 (353)
58 COG0215 CysS Cysteinyl-tRNA sy 100.0 2.9E-28 6.3E-33 271.7 20.1 343 92-714 23-368 (464)
59 KOG2007 Cysteinyl-tRNA synthet 99.9 2.2E-24 4.8E-29 236.0 29.2 363 98-727 62-428 (586)
60 cd07961 Anticodon_Ia_Ile_ABEc 99.9 2.8E-25 6.1E-30 228.5 19.3 175 624-810 1-183 (183)
61 PF01406 tRNA-synt_1e: tRNA sy 99.9 9E-26 2E-30 240.6 13.2 292 91-634 8-300 (300)
62 PRK00750 lysK lysyl-tRNA synth 99.9 3.3E-24 7.3E-29 251.1 19.0 125 89-222 22-155 (510)
63 cd07960 Anticodon_Ia_Ile_BEm A 99.9 1.1E-23 2.5E-28 215.9 19.8 175 624-809 1-179 (180)
64 TIGR00456 argS arginyl-tRNA sy 99.9 1.8E-22 4E-27 241.1 31.7 205 541-761 330-562 (566)
65 PF13603 tRNA-synt_1_2: Leucyl 99.9 5.2E-23 1.1E-27 207.3 12.3 127 254-382 10-185 (185)
66 PF08264 Anticodon_1: Anticodo 99.9 2.4E-22 5.1E-27 200.6 16.0 147 680-828 1-153 (153)
67 COG0018 ArgS Arginyl-tRNA synt 99.9 1.2E-18 2.6E-23 204.5 37.0 202 541-762 337-574 (577)
68 TIGR00467 lysS_arch lysyl-tRNA 99.8 1.3E-19 2.7E-24 210.8 20.3 99 90-196 18-124 (515)
69 PRK12451 arginyl-tRNA syntheta 99.8 4.2E-18 9E-23 202.9 33.0 193 542-759 328-556 (562)
70 PLN02286 arginine-tRNA ligase 99.8 2.3E-17 5E-22 196.6 33.5 201 541-761 330-572 (576)
71 cd00671 ArgRS_core catalytic c 99.7 1.9E-16 4.1E-21 166.4 13.7 121 92-234 2-123 (212)
72 cd07962 Anticodon_Ia_Val Antic 99.7 2E-15 4.3E-20 147.3 16.3 135 624-772 1-135 (135)
73 cd07959 Anticodon_Ia_Leu_AEc A 99.6 9.8E-15 2.1E-19 138.6 14.3 116 624-772 1-117 (117)
74 cd07957 Anticodon_Ia_Met Antic 99.6 4.4E-14 9.5E-19 136.5 14.1 95 676-772 34-129 (129)
75 cd07958 Anticodon_Ia_Leu_BEm A 99.5 7E-14 1.5E-18 132.6 13.1 117 624-772 1-117 (117)
76 PF00750 tRNA-synt_1d: tRNA sy 99.5 3.8E-14 8.1E-19 160.2 11.2 148 77-228 8-196 (354)
77 PF10458 Val_tRNA-synt_C: Valy 99.5 7.8E-14 1.7E-18 117.3 7.8 66 889-954 1-66 (66)
78 cd07375 Anticodon_Ia_like Anti 99.2 2.2E-10 4.9E-15 108.1 13.7 116 627-761 2-117 (117)
79 PF01921 tRNA-synt_1f: tRNA sy 99.2 3.8E-11 8.1E-16 132.2 8.0 102 88-196 21-130 (360)
80 cd00802 class_I_aaRS_core cata 99.2 6.3E-11 1.4E-15 116.8 8.0 76 95-186 2-77 (143)
81 PRK04156 gltX glutamyl-tRNA sy 99.0 3.4E-08 7.3E-13 116.0 24.6 96 93-224 102-197 (567)
82 COG1384 LysS Lysyl-tRNA synthe 98.9 5.4E-08 1.2E-12 110.2 19.1 100 90-195 19-126 (521)
83 TIGR00464 gltX_bact glutamyl-t 98.8 2E-07 4.4E-12 109.0 20.8 94 95-225 4-97 (470)
84 PRK01406 gltX glutamyl-tRNA sy 98.7 6.3E-07 1.4E-11 104.9 20.2 95 93-225 5-107 (476)
85 TIGR00463 gltX_arch glutamyl-t 98.6 6.5E-06 1.4E-10 96.9 25.2 96 92-225 93-188 (560)
86 PRK12558 glutamyl-tRNA synthet 98.6 3.6E-06 7.9E-11 96.8 20.2 93 94-225 4-97 (445)
87 PRK12410 glutamylglutaminyl-tR 98.6 5.2E-06 1.1E-10 95.1 21.3 91 97-225 4-94 (433)
88 PLN03233 putative glutamate-tR 98.4 3.6E-05 7.7E-10 89.8 24.6 95 93-225 12-106 (523)
89 PRK05347 glutaminyl-tRNA synth 98.4 6.3E-05 1.4E-09 88.1 26.2 96 93-225 30-125 (554)
90 PLN02907 glutamate-tRNA ligase 98.4 5.4E-05 1.2E-09 92.7 25.2 95 92-224 213-307 (722)
91 PRK14703 glutaminyl-tRNA synth 98.3 7.8E-05 1.7E-09 91.1 23.4 96 93-225 32-127 (771)
92 PLN02627 glutamyl-tRNA synthet 98.3 5.9E-05 1.3E-09 88.1 21.0 94 93-224 46-148 (535)
93 PRK14895 gltX glutamyl-tRNA sy 98.2 3E-05 6.5E-10 90.4 17.9 94 94-225 6-100 (513)
94 cd09287 GluRS_non_core catalyt 98.1 5.6E-06 1.2E-10 87.5 8.1 94 95-224 4-97 (240)
95 KOG4426 Arginyl-tRNA synthetas 98.1 0.00023 5.1E-09 78.3 19.2 59 89-148 187-250 (656)
96 TIGR03838 queuosine_YadB gluta 97.7 0.00011 2.4E-09 79.6 8.9 91 97-225 5-96 (272)
97 PTZ00402 glutamyl-tRNA synthet 97.6 0.00032 7E-09 82.9 10.8 93 93-223 53-146 (601)
98 PTZ00437 glutaminyl-tRNA synth 97.6 0.00029 6.3E-09 82.6 10.3 95 93-225 52-146 (574)
99 TIGR00440 glnS glutaminyl-tRNA 97.5 0.0003 6.4E-09 82.4 9.4 96 94-226 2-97 (522)
100 cd00807 GlnRS_core catalytic c 97.5 0.0004 8.6E-09 73.4 9.1 93 94-224 3-95 (238)
101 PF00749 tRNA-synt_1c: tRNA sy 97.5 0.00023 5.1E-09 79.3 7.3 94 95-225 4-97 (314)
102 PLN02859 glutamine-tRNA ligase 97.4 0.00061 1.3E-08 82.6 10.4 95 93-225 265-359 (788)
103 COG0008 GlnS Glutamyl- and glu 97.3 0.00081 1.8E-08 78.2 9.5 95 93-225 10-105 (472)
104 PRK05710 glutamyl-Q tRNA(Asp) 97.3 0.0008 1.7E-08 73.8 8.6 96 93-225 6-101 (299)
105 cd00418 GlxRS_core catalytic c 97.2 0.0013 2.9E-08 69.4 9.0 88 95-220 4-92 (230)
106 cd00808 GluRS_core catalytic c 97.1 0.002 4.3E-08 68.6 8.7 88 95-220 4-100 (239)
107 KOG1147 Glutamyl-tRNA syntheta 96.4 0.0087 1.9E-07 68.2 8.0 99 93-229 201-299 (712)
108 cd07956 Anticodon_Ia_Arg Antic 96.2 0.13 2.8E-06 51.4 14.3 136 603-758 2-149 (156)
109 KOG1195 Arginyl-tRNA synthetas 96.1 0.076 1.7E-06 60.7 13.6 158 63-224 81-277 (567)
110 PRK13354 tyrosyl-tRNA syntheta 95.2 0.019 4.2E-07 66.3 4.5 72 538-614 185-256 (410)
111 cd00418 GlxRS_core catalytic c 95.1 0.095 2.1E-06 55.5 9.1 75 540-618 110-185 (230)
112 COG0495 LeuS Leucyl-tRNA synth 94.2 0.053 1.2E-06 67.0 5.1 79 374-454 137-230 (814)
113 PRK05912 tyrosyl-tRNA syntheta 94.1 0.038 8.3E-07 63.9 3.6 72 538-615 187-259 (408)
114 PLN02563 aminoacyl-tRNA ligase 94.1 0.098 2.1E-06 66.7 7.5 79 371-452 211-303 (963)
115 cd00805 TyrRS_core catalytic c 94.0 0.06 1.3E-06 58.9 4.7 69 540-615 152-221 (269)
116 PRK14900 valS valyl-tRNA synth 94.0 0.057 1.2E-06 69.9 5.2 60 888-948 845-905 (1052)
117 cd00802 class_I_aaRS_core cata 93.8 0.08 1.7E-06 52.0 4.7 50 540-591 94-143 (143)
118 KOG1148 Glutaminyl-tRNA synthe 93.8 0.15 3.2E-06 59.2 7.2 96 92-225 248-343 (764)
119 cd00395 Tyr_Trp_RS_core cataly 93.7 0.069 1.5E-06 58.5 4.4 56 538-597 152-209 (273)
120 PF00579 tRNA-synt_1b: tRNA sy 93.6 0.076 1.6E-06 58.9 4.6 62 538-599 148-212 (292)
121 KOG1149 Glutamyl-tRNA syntheta 92.9 0.45 9.7E-06 53.6 9.1 132 96-262 37-190 (524)
122 PRK12556 tryptophanyl-tRNA syn 92.9 0.1 2.2E-06 58.7 4.2 61 538-599 148-215 (332)
123 cd00808 GluRS_core catalytic c 92.7 0.36 7.7E-06 51.6 7.9 76 539-618 118-194 (239)
124 PRK12284 tryptophanyl-tRNA syn 92.4 0.1 2.3E-06 59.8 3.6 61 538-599 147-215 (431)
125 TIGR00396 leuS_bact leucyl-tRN 92.2 0.24 5.2E-06 62.8 6.7 81 371-453 129-224 (842)
126 TIGR00233 trpS tryptophanyl-tR 91.7 0.11 2.4E-06 58.4 2.7 90 538-634 138-238 (328)
127 PRK08560 tyrosyl-tRNA syntheta 91.5 0.22 4.7E-06 56.2 4.7 58 538-599 167-228 (329)
128 COG0180 TrpS Tryptophanyl-tRNA 90.9 0.2 4.3E-06 55.3 3.5 58 540-599 146-212 (314)
129 PRK00390 leuS leucyl-tRNA synt 90.7 0.49 1.1E-05 59.9 7.3 101 371-473 132-247 (805)
130 PRK12282 tryptophanyl-tRNA syn 90.2 0.26 5.6E-06 55.5 3.8 61 538-599 141-209 (333)
131 PRK12285 tryptophanyl-tRNA syn 89.6 0.23 5E-06 56.6 2.9 61 73-138 40-108 (368)
132 COG0162 TyrS Tyrosyl-tRNA synt 89.5 0.25 5.5E-06 56.5 3.0 54 539-596 180-234 (401)
133 PF15188 CCDC-167: Coiled-coil 89.4 2.1 4.6E-05 37.7 8.0 62 890-955 3-64 (85)
134 cd00806 TrpRS_core catalytic c 89.2 0.37 8E-06 53.0 4.0 70 539-615 137-216 (280)
135 PTZ00126 tyrosyl-tRNA syntheta 89.2 0.4 8.6E-06 55.0 4.3 70 538-615 209-282 (383)
136 PLN02486 aminoacyl-tRNA ligase 88.9 1.8 3.8E-05 49.7 9.2 58 75-137 49-115 (383)
137 PRK12285 tryptophanyl-tRNA syn 88.0 1.5 3.2E-05 50.1 7.9 69 540-615 204-276 (368)
138 TIGR00234 tyrS tyrosyl-tRNA sy 87.6 0.56 1.2E-05 53.8 4.3 57 540-599 178-234 (377)
139 KOG0435 Leucyl-tRNA synthetase 87.5 0.4 8.6E-06 56.8 2.9 77 372-451 158-249 (876)
140 PRK00927 tryptophanyl-tRNA syn 86.3 0.52 1.1E-05 53.2 3.0 72 538-615 137-220 (333)
141 cd00806 TrpRS_core catalytic c 85.2 1.4 3.1E-05 48.5 5.7 36 100-138 7-42 (280)
142 PF02388 FemAB: FemAB family; 85.1 2.1 4.5E-05 49.8 7.3 59 888-957 238-296 (406)
143 cd00395 Tyr_Trp_RS_core cataly 84.5 1.3 2.8E-05 48.5 5.0 34 101-138 8-42 (273)
144 cd00671 ArgRS_core catalytic c 83.7 1.9 4.1E-05 45.4 5.7 50 542-592 162-212 (212)
145 cd00807 GlnRS_core catalytic c 82.7 4.4 9.6E-05 43.2 7.9 54 577-631 156-226 (238)
146 PRK12283 tryptophanyl-tRNA syn 82.6 0.56 1.2E-05 53.5 1.2 35 576-615 254-288 (398)
147 PRK13354 tyrosyl-tRNA syntheta 82.3 1.9 4.1E-05 50.1 5.4 45 89-138 31-76 (410)
148 cd00805 TyrRS_core catalytic c 82.3 1 2.2E-05 49.2 3.1 73 100-193 8-83 (269)
149 PRK08560 tyrosyl-tRNA syntheta 82.2 2.2 4.8E-05 48.1 5.8 44 90-138 29-72 (329)
150 cd09287 GluRS_non_core catalyt 78.8 5.1 0.00011 42.9 6.7 64 572-636 153-234 (240)
151 PF05746 DALR_1: DALR anticodo 78.6 11 0.00025 35.2 8.5 78 677-758 32-112 (119)
152 KOG1195 Arginyl-tRNA synthetas 78.6 14 0.00029 43.1 10.3 160 585-758 366-560 (567)
153 PRK10636 putative ABC transpor 77.6 8.7 0.00019 47.6 9.4 64 891-954 562-625 (638)
154 PRK05912 tyrosyl-tRNA syntheta 77.5 4.5 9.6E-05 47.1 6.4 42 90-136 32-74 (408)
155 PF03962 Mnd1: Mnd1 family; I 76.9 10 0.00022 39.1 8.2 78 877-955 52-131 (188)
156 PRK12284 tryptophanyl-tRNA syn 76.3 4.9 0.00011 46.5 6.1 98 100-225 10-108 (431)
157 PF14282 FlxA: FlxA-like prote 75.2 16 0.00035 33.9 8.2 57 889-955 16-72 (106)
158 PF14257 DUF4349: Domain of un 74.1 14 0.0003 40.2 8.9 65 888-957 128-192 (262)
159 PLN02486 aminoacyl-tRNA ligase 74.0 3.1 6.6E-05 47.8 3.8 65 542-615 222-290 (383)
160 PF07061 Swi5: Swi5; InterPro 73.4 28 0.0006 30.8 8.7 60 890-955 5-64 (83)
161 PTZ00348 tyrosyl-tRNA syntheta 69.6 4.1 8.9E-05 50.1 3.7 59 538-599 174-236 (682)
162 PF11336 DUF3138: Protein of u 69.1 14 0.00031 41.9 7.4 62 890-951 23-107 (514)
163 cd00890 Prefoldin Prefoldin is 68.2 1E+02 0.0022 29.3 12.5 45 869-913 60-108 (129)
164 PLN02886 aminoacyl-tRNA ligase 68.2 5.6 0.00012 45.6 4.2 94 100-223 54-148 (389)
165 PF01927 Mut7-C: Mut7-C RNAse 65.6 9.2 0.0002 37.8 4.7 22 119-140 12-33 (147)
166 PRK00927 tryptophanyl-tRNA syn 65.5 4.3 9.3E-05 45.9 2.6 32 100-135 9-40 (333)
167 TIGR00233 trpS tryptophanyl-tR 65.5 4.2 9E-05 45.9 2.5 43 91-138 2-44 (328)
168 PF07106 TBPIP: Tat binding pr 64.1 35 0.00077 34.4 8.7 62 889-955 76-137 (169)
169 COG0180 TrpS Tryptophanyl-tRNA 63.7 19 0.00042 40.0 7.1 90 90-207 4-95 (314)
170 TIGR00440 glnS glutaminyl-tRNA 61.6 14 0.00031 44.0 6.0 57 580-636 235-309 (522)
171 PRK11147 ABC transporter ATPas 61.2 32 0.00069 42.7 9.3 63 892-955 568-630 (635)
172 PF05008 V-SNARE: Vesicle tran 60.1 65 0.0014 27.8 8.5 57 889-951 22-78 (79)
173 PLN02886 aminoacyl-tRNA ligase 59.6 9.9 0.00021 43.6 4.1 61 538-599 183-267 (389)
174 TIGR00234 tyrS tyrosyl-tRNA sy 59.6 8.3 0.00018 44.3 3.6 41 91-136 30-71 (377)
175 PRK12556 tryptophanyl-tRNA syn 59.5 11 0.00024 42.5 4.5 34 100-135 11-44 (332)
176 COG3883 Uncharacterized protei 59.3 36 0.00079 36.8 8.0 66 890-955 36-101 (265)
177 PRK11020 hypothetical protein; 58.4 63 0.0014 30.0 8.1 51 889-948 2-52 (118)
178 COG1730 GIM5 Predicted prefold 58.4 1.9E+02 0.0042 28.5 16.5 48 868-915 66-117 (145)
179 PRK00736 hypothetical protein; 58.3 72 0.0016 27.1 8.1 52 889-954 2-53 (68)
180 PF07544 Med9: RNA polymerase 58.3 30 0.00064 30.6 6.0 60 888-958 24-83 (83)
181 PF04102 SlyX: SlyX; InterPro 58.2 52 0.0011 28.0 7.3 51 890-954 2-52 (69)
182 COG4372 Uncharacterized protei 57.8 38 0.00083 38.0 7.9 66 890-955 215-280 (499)
183 PF06696 Strep_SA_rep: Strepto 57.2 23 0.0005 23.8 3.7 22 932-953 3-24 (25)
184 PF00579 tRNA-synt_1b: tRNA sy 56.0 5.8 0.00013 44.0 1.5 43 90-137 4-46 (292)
185 COG3750 Uncharacterized protei 55.8 52 0.0011 28.4 6.6 60 893-952 22-81 (85)
186 PF05531 NPV_P10: Nucleopolyhe 55.8 89 0.0019 27.1 8.1 58 890-958 9-66 (75)
187 PRK13729 conjugal transfer pil 55.6 33 0.00073 40.0 7.4 26 930-955 100-125 (475)
188 PRK02793 phi X174 lysis protei 55.5 77 0.0017 27.2 7.9 53 889-955 5-57 (72)
189 PRK00295 hypothetical protein; 55.3 90 0.002 26.5 8.2 52 890-955 3-54 (68)
190 PRK10884 SH3 domain-containing 54.2 1.4E+02 0.003 31.4 11.1 49 868-916 66-117 (206)
191 PRK11637 AmiB activator; Provi 54.0 32 0.00069 40.4 7.3 13 893-905 48-60 (428)
192 KOG2185 Predicted RNA-processi 53.8 37 0.0008 38.4 7.0 57 888-955 416-472 (486)
193 PTZ00402 glutamyl-tRNA synthet 53.5 45 0.00097 40.5 8.3 66 572-638 275-358 (601)
194 PTZ00126 tyrosyl-tRNA syntheta 53.4 23 0.00051 40.7 5.8 43 90-136 65-107 (383)
195 PRK04325 hypothetical protein; 53.0 87 0.0019 27.1 7.9 51 890-954 7-57 (74)
196 COG3883 Uncharacterized protei 52.7 52 0.0011 35.6 7.8 62 890-951 43-104 (265)
197 PRK11637 AmiB activator; Provi 52.1 35 0.00075 40.1 7.2 26 890-915 52-77 (428)
198 PF11559 ADIP: Afadin- and alp 51.4 50 0.0011 32.6 7.2 65 890-954 64-128 (151)
199 PF07989 Microtub_assoc: Micro 51.1 85 0.0018 27.2 7.5 65 889-954 4-70 (75)
200 PF08287 DASH_Spc19: Spc19; I 51.0 58 0.0013 32.4 7.4 64 890-953 73-153 (153)
201 PF08657 DASH_Spc34: DASH comp 50.6 28 0.00061 37.8 5.5 58 889-946 191-258 (259)
202 KOG2623 Tyrosyl-tRNA synthetas 50.3 19 0.0004 40.7 4.1 55 538-599 226-286 (467)
203 COG3879 Uncharacterized protei 50.1 43 0.00094 35.7 6.6 51 888-948 53-103 (247)
204 PTZ00437 glutaminyl-tRNA synth 49.8 16 0.00035 43.8 3.9 60 580-639 280-357 (574)
205 KOG3990 Uncharacterized conser 49.5 64 0.0014 34.1 7.6 67 889-955 229-295 (305)
206 PF14389 Lzipper-MIP1: Leucine 49.3 1.3E+02 0.0029 26.9 8.7 66 889-955 12-82 (88)
207 PRK12283 tryptophanyl-tRNA syn 49.1 19 0.00042 41.4 4.2 65 100-193 10-75 (398)
208 PRK02119 hypothetical protein; 48.4 1.1E+02 0.0024 26.3 7.8 53 889-955 6-58 (73)
209 PLN02859 glutamine-tRNA ligase 47.8 36 0.00078 42.5 6.5 53 579-631 492-562 (788)
210 KOG2264 Exostosin EXT1L [Signa 47.7 50 0.0011 38.8 7.1 59 890-955 91-149 (907)
211 COG0008 GlnS Glutamyl- and glu 47.6 30 0.00066 40.8 5.7 43 572-615 236-279 (472)
212 PRK04406 hypothetical protein; 47.5 1.1E+02 0.0024 26.5 7.7 52 890-955 9-60 (75)
213 PF02996 Prefoldin: Prefoldin 47.5 2.2E+02 0.0047 26.6 10.6 40 874-913 55-98 (120)
214 PRK03947 prefoldin subunit alp 47.0 2.8E+02 0.006 26.9 16.1 66 869-948 67-136 (140)
215 TIGR00414 serS seryl-tRNA synt 46.4 38 0.00081 39.6 6.2 66 886-954 31-96 (418)
216 PF10805 DUF2730: Protein of u 46.2 1E+02 0.0022 28.6 7.9 60 890-955 33-93 (106)
217 PF10779 XhlA: Haemolysin XhlA 45.6 1.4E+02 0.003 25.5 8.0 50 889-952 3-52 (71)
218 cd00089 HR1 Protein kinase C-r 45.4 1.4E+02 0.003 25.4 8.0 65 890-956 7-71 (72)
219 PRK00846 hypothetical protein; 45.2 1.5E+02 0.0032 26.0 7.9 53 889-955 10-62 (77)
220 PF10458 Val_tRNA-synt_C: Valy 44.9 40 0.00087 28.3 4.5 60 897-956 2-61 (66)
221 PF03961 DUF342: Protein of un 44.6 57 0.0012 38.6 7.5 67 889-955 331-403 (451)
222 PF08317 Spc7: Spc7 kinetochor 44.5 96 0.0021 35.0 8.9 20 895-914 180-199 (325)
223 TIGR03752 conj_TIGR03752 integ 44.4 68 0.0015 37.5 7.6 66 889-954 70-136 (472)
224 PF02185 HR1: Hr1 repeat; Int 44.3 1.5E+02 0.0032 25.1 8.0 60 894-958 3-64 (70)
225 KOG3564 GTPase-activating prot 44.3 61 0.0013 37.6 7.0 69 889-957 39-107 (604)
226 PRK05431 seryl-tRNA synthetase 44.0 35 0.00075 40.0 5.5 32 886-917 29-60 (425)
227 PF07889 DUF1664: Protein of u 43.7 80 0.0017 30.3 6.8 63 895-957 57-119 (126)
228 PF11932 DUF3450: Protein of u 43.6 65 0.0014 34.8 7.2 65 891-955 41-105 (251)
229 PRK12282 tryptophanyl-tRNA syn 43.3 31 0.00067 39.0 4.7 16 100-115 10-25 (333)
230 smart00836 DALR_1 DALR anticod 43.2 2.1E+02 0.0046 26.6 9.9 78 678-759 36-116 (122)
231 TIGR02338 gimC_beta prefoldin, 42.7 54 0.0012 30.6 5.5 25 889-913 64-88 (110)
232 PF06120 Phage_HK97_TLTM: Tail 41.8 1.2E+02 0.0025 33.7 8.7 63 889-953 85-153 (301)
233 PRK10884 SH3 domain-containing 41.6 99 0.0021 32.4 7.8 63 889-954 97-159 (206)
234 COG2433 Uncharacterized conser 41.5 70 0.0015 38.3 7.2 68 889-956 440-510 (652)
235 PRK13182 racA polar chromosome 41.3 1.3E+02 0.0028 30.7 8.3 65 890-956 83-147 (175)
236 TIGR02894 DNA_bind_RsfA transc 40.5 1.5E+02 0.0034 29.5 8.3 55 890-958 102-156 (161)
237 PF03962 Mnd1: Mnd1 family; I 40.4 1.3E+02 0.0028 31.1 8.3 61 892-955 103-163 (188)
238 PF14712 Snapin_Pallidin: Snap 39.3 1.7E+02 0.0036 26.1 8.0 65 890-955 19-85 (92)
239 KOG2145 Cytoplasmic tryptophan 39.2 28 0.00061 37.6 3.3 40 75-114 61-108 (397)
240 PF13851 GAS: Growth-arrest sp 39.1 93 0.002 32.5 7.1 30 888-917 51-80 (201)
241 PLN02320 seryl-tRNA synthetase 39.1 50 0.0011 39.3 5.7 64 886-954 94-157 (502)
242 KOG2911 Uncharacterized conser 38.7 1E+02 0.0022 35.5 7.7 65 888-954 236-300 (439)
243 COG2348 Peptidoglycan interpep 38.6 82 0.0018 36.6 7.1 63 880-951 235-297 (418)
244 PLN02678 seryl-tRNA synthetase 38.4 46 0.00099 39.2 5.2 32 886-917 34-65 (448)
245 PF07407 Seadorna_VP6: Seadorn 38.3 86 0.0019 34.5 6.7 62 885-958 32-93 (420)
246 PRK05710 glutamyl-Q tRNA(Asp) 37.8 53 0.0012 36.5 5.4 42 572-617 222-263 (299)
247 COG0162 TyrS Tyrosyl-tRNA synt 37.7 26 0.00057 40.4 3.0 37 92-136 36-73 (401)
248 PF05524 PEP-utilisers_N: PEP- 37.6 66 0.0014 30.4 5.4 29 888-916 31-59 (123)
249 PF00846 Hanta_nucleocap: Hant 37.4 97 0.0021 35.1 7.1 61 893-953 3-68 (428)
250 cd00939 MetRS_RNA MetRS_RNA bi 37.3 1.3E+02 0.0027 23.4 5.6 26 922-947 18-43 (45)
251 PRK09343 prefoldin subunit bet 36.7 80 0.0017 30.1 5.7 25 889-913 68-92 (121)
252 PF07851 TMPIT: TMPIT-like pro 36.1 1E+02 0.0022 34.6 7.2 24 932-955 66-89 (330)
253 cd00632 Prefoldin_beta Prefold 36.0 61 0.0013 29.9 4.7 61 874-948 42-105 (105)
254 cd00938 HisRS_RNA HisRS_RNA bi 35.7 1.3E+02 0.0027 23.4 5.3 22 922-943 20-41 (45)
255 PRK13694 hypothetical protein; 35.7 97 0.0021 27.2 5.4 60 893-952 20-79 (83)
256 PF07798 DUF1640: Protein of u 35.6 1.2E+02 0.0025 31.0 7.1 28 891-918 72-99 (177)
257 PF05377 FlaC_arch: Flagella a 35.4 1.5E+02 0.0033 24.1 6.0 26 929-954 16-41 (55)
258 PF01920 Prefoldin_2: Prefoldi 35.4 1.6E+02 0.0035 26.7 7.5 37 919-955 54-90 (106)
259 PF04420 CHD5: CHD5-like prote 35.3 1.6E+02 0.0034 29.6 7.9 52 896-953 37-92 (161)
260 TIGR03185 DNA_S_dndD DNA sulfu 34.9 1.2E+02 0.0026 37.7 8.5 57 890-952 389-446 (650)
261 PF12761 End3: Actin cytoskele 34.6 1.1E+02 0.0024 31.6 6.5 50 889-939 93-143 (195)
262 PF02403 Seryl_tRNA_N: Seryl-t 34.6 55 0.0012 30.2 4.2 67 887-953 31-100 (108)
263 PF02970 TBCA: Tubulin binding 34.3 2E+02 0.0043 25.8 7.5 64 892-956 7-74 (90)
264 PHA00728 hypothetical protein 34.2 57 0.0012 30.4 4.0 53 891-953 4-56 (151)
265 PF03938 OmpH: Outer membrane 34.2 2E+02 0.0044 28.3 8.6 55 890-946 41-95 (158)
266 PF05278 PEARLI-4: Arabidopsis 34.1 1.7E+02 0.0037 31.8 8.2 54 890-957 205-258 (269)
267 cd01109 HTH_YyaN Helix-Turn-He 34.1 99 0.0021 28.8 5.9 63 896-958 48-110 (113)
268 KOG0995 Centromere-associated 33.5 1.7E+02 0.0037 35.0 8.7 60 890-953 299-358 (581)
269 PRK03947 prefoldin subunit alp 33.2 2E+02 0.0043 27.9 8.1 37 920-956 87-123 (140)
270 COG1579 Zn-ribbon protein, pos 33.2 1.6E+02 0.0035 31.5 7.8 67 889-955 56-124 (239)
271 PF12329 TMF_DNA_bd: TATA elem 33.0 3E+02 0.0064 23.8 8.1 21 893-913 20-40 (74)
272 PF01920 Prefoldin_2: Prefoldi 32.6 1.9E+02 0.004 26.3 7.4 25 889-913 59-83 (106)
273 cd04787 HTH_HMRTR_unk Helix-Tu 32.3 1.2E+02 0.0027 29.2 6.4 64 893-956 45-108 (133)
274 PF09278 MerR-DNA-bind: MerR, 32.1 1.2E+02 0.0025 25.0 5.4 57 899-955 8-64 (65)
275 PF07106 TBPIP: Tat binding pr 31.9 1.1E+02 0.0024 30.8 6.2 56 888-948 82-137 (169)
276 PF12325 TMF_TATA_bd: TATA ele 31.8 2.7E+02 0.0059 26.5 8.3 21 892-912 37-57 (120)
277 KOG2129 Uncharacterized conser 31.6 2E+02 0.0043 32.9 8.3 40 890-929 199-238 (552)
278 KOG4603 TBP-1 interacting prot 31.5 2E+02 0.0043 28.9 7.4 62 891-957 85-146 (201)
279 PF06476 DUF1090: Protein of u 31.4 1.6E+02 0.0036 27.7 6.8 48 889-945 67-114 (115)
280 PF05529 Bap31: B-cell recepto 31.4 1.9E+02 0.0041 29.7 8.0 30 925-954 159-188 (192)
281 cd01106 HTH_TipAL-Mta Helix-Tu 31.2 1.6E+02 0.0034 26.9 6.7 53 899-957 51-103 (103)
282 PF03357 Snf7: Snf7; InterPro 30.7 2.4E+02 0.0051 28.0 8.5 64 890-955 6-69 (171)
283 PF00749 tRNA-synt_1c: tRNA sy 30.4 93 0.002 34.9 5.9 73 540-616 200-275 (314)
284 cd04786 HTH_MerR-like_sg7 Heli 30.4 1.5E+02 0.0033 28.6 6.6 64 893-957 45-108 (131)
285 PF12329 TMF_DNA_bd: TATA elem 30.3 3.5E+02 0.0077 23.3 8.1 51 890-954 10-60 (74)
286 KOG0804 Cytoplasmic Zn-finger 29.8 1.4E+02 0.003 34.6 6.9 31 889-919 372-402 (493)
287 COG0216 PrfA Protein chain rel 29.4 2.6E+02 0.0056 31.4 8.7 50 899-953 53-102 (363)
288 PRK11020 hypothetical protein; 29.3 1.5E+02 0.0034 27.6 5.9 49 898-955 4-52 (118)
289 COG1163 DRG Predicted GTPase [ 29.1 80 0.0017 35.3 4.8 41 898-946 5-45 (365)
290 PF04977 DivIC: Septum formati 28.8 1.1E+02 0.0023 26.3 4.9 29 888-916 20-48 (80)
291 PRK15178 Vi polysaccharide exp 28.7 1.3E+02 0.0029 35.1 6.8 62 887-950 274-337 (434)
292 TIGR02420 dksA RNA polymerase- 28.7 3.1E+02 0.0067 25.5 8.2 65 891-955 7-77 (110)
293 PF04568 IATP: Mitochondrial A 28.3 1E+02 0.0023 28.3 4.7 29 928-956 66-98 (100)
294 PF10073 DUF2312: Uncharacteri 28.3 1.5E+02 0.0032 25.6 5.2 58 893-950 12-69 (74)
295 TIGR03838 queuosine_YadB gluta 28.2 49 0.0011 36.2 3.1 26 567-594 212-237 (272)
296 TIGR00293 prefoldin, archaeal 28.1 5.2E+02 0.011 24.4 14.8 45 869-913 59-107 (126)
297 PF10153 DUF2361: Uncharacteri 28.1 1.8E+02 0.0039 27.4 6.3 41 904-948 2-42 (114)
298 KOG3647 Predicted coiled-coil 27.9 1.6E+02 0.0034 31.7 6.4 50 897-946 110-159 (338)
299 PF11068 YlqD: YlqD protein; 27.8 2.9E+02 0.0062 26.8 7.8 65 890-956 25-89 (131)
300 PF03961 DUF342: Protein of un 27.7 1.3E+02 0.0028 35.5 6.8 65 888-953 337-408 (451)
301 PF10779 XhlA: Haemolysin XhlA 27.6 1.8E+02 0.0038 24.8 5.8 46 904-956 4-49 (71)
302 COG1937 Uncharacterized protei 27.5 2.6E+02 0.0057 25.1 6.9 32 890-921 4-35 (89)
303 PF04518 Effector_1: Effector 27.5 2.7E+02 0.0058 32.0 8.7 68 890-957 205-272 (379)
304 PF00458 WHEP-TRS: WHEP-TRS do 27.3 2.9E+02 0.0063 22.5 6.6 42 898-947 2-43 (56)
305 KOG0977 Nuclear envelope prote 27.2 1.4E+02 0.0031 35.8 6.7 29 889-917 103-131 (546)
306 smart00435 TOPEUc DNA Topoisom 27.2 2.1E+02 0.0045 32.9 7.8 23 893-915 278-300 (391)
307 PF09766 FimP: Fms-interacting 27.1 2.2E+02 0.0049 32.5 8.3 51 893-957 102-152 (355)
308 TIGR00999 8a0102 Membrane Fusi 27.0 2.5E+02 0.0054 30.1 8.5 62 890-955 21-82 (265)
309 PF00435 Spectrin: Spectrin re 27.0 4.2E+02 0.0091 23.0 9.6 61 893-955 2-62 (105)
310 PTZ00348 tyrosyl-tRNA syntheta 26.7 64 0.0014 40.0 4.0 40 90-134 31-71 (682)
311 PF04201 TPD52: Tumour protein 26.7 3E+02 0.0065 27.6 7.8 25 890-914 27-51 (162)
312 PRK06798 fliD flagellar cappin 26.5 1.9E+02 0.004 34.2 7.7 56 892-957 379-434 (440)
313 PRK10636 putative ABC transpor 26.4 1.2E+02 0.0025 37.8 6.3 62 894-955 558-619 (638)
314 COG4942 Membrane-bound metallo 26.1 1.7E+02 0.0037 33.9 7.0 26 890-915 43-68 (420)
315 KOG2391 Vacuolar sorting prote 26.0 2.5E+02 0.0054 31.4 7.8 26 889-914 215-240 (365)
316 PF02583 Trns_repr_metal: Meta 25.9 2.7E+02 0.0058 24.7 6.8 30 892-921 2-31 (85)
317 PTZ00446 vacuolar sorting prot 25.8 2.8E+02 0.006 28.7 7.8 27 888-914 30-56 (191)
318 PF09755 DUF2046: Uncharacteri 25.4 2.7E+02 0.0057 31.0 7.9 55 895-955 109-163 (310)
319 PTZ00419 valyl-tRNA synthetase 25.2 90 0.002 40.9 5.3 62 888-949 932-993 (995)
320 PF00261 Tropomyosin: Tropomyo 25.2 1.9E+02 0.0042 30.9 7.0 64 890-953 125-188 (237)
321 cd06545 GH18_3CO4_chitinase Th 25.1 2.3E+02 0.0049 30.5 7.6 99 99-222 33-134 (253)
322 TIGR02231 conserved hypothetic 25.1 2.4E+02 0.0051 34.1 8.5 25 891-915 77-101 (525)
323 PRK15039 transcriptional repre 24.9 3.1E+02 0.0066 24.8 6.9 37 891-931 5-41 (90)
324 PF09403 FadA: Adhesion protei 24.8 3.3E+02 0.0072 26.2 7.6 65 892-957 59-123 (126)
325 PRK09039 hypothetical protein; 24.7 2.7E+02 0.0057 31.7 8.3 26 890-915 142-167 (343)
326 PF09755 DUF2046: Uncharacteri 24.6 3.5E+02 0.0076 30.1 8.7 26 893-918 179-204 (310)
327 cd01107 HTH_BmrR Helix-Turn-He 24.6 2.5E+02 0.0055 25.9 6.8 59 895-958 48-106 (108)
328 TIGR01010 BexC_CtrB_KpsE polys 24.6 3E+02 0.0065 31.4 8.9 29 887-915 202-230 (362)
329 COG1382 GimC Prefoldin, chaper 24.4 1.4E+02 0.0031 28.3 4.9 59 874-946 49-110 (119)
330 PF04102 SlyX: SlyX; InterPro 24.3 4.4E+02 0.0095 22.3 7.6 28 928-955 19-46 (69)
331 KOG3433 Protein involved in me 24.3 2.3E+02 0.0051 28.8 6.6 67 889-955 78-144 (203)
332 PLN02943 aminoacyl-tRNA ligase 24.2 88 0.0019 40.8 4.8 59 889-947 893-951 (958)
333 PF08614 ATG16: Autophagy prot 24.1 88 0.0019 32.4 4.0 64 891-954 108-171 (194)
334 cd00584 Prefoldin_alpha Prefol 23.9 4.3E+02 0.0093 25.1 8.5 37 920-956 80-116 (129)
335 PRK13729 conjugal transfer pil 23.6 2.1E+02 0.0046 33.7 7.2 22 934-955 97-118 (475)
336 cd01282 HTH_MerR-like_sg3 Heli 23.6 2.4E+02 0.0051 26.3 6.4 63 895-957 46-111 (112)
337 cd04770 HTH_HMRTR Helix-Turn-H 23.5 2E+02 0.0043 27.1 6.1 63 895-957 47-109 (123)
338 PF04977 DivIC: Septum formati 23.5 71 0.0015 27.4 2.7 23 889-911 28-50 (80)
339 PF11853 DUF3373: Protein of u 23.4 50 0.0011 38.9 2.2 26 888-913 27-52 (489)
340 PRK05729 valS valyl-tRNA synth 23.4 1.2E+02 0.0025 39.3 5.7 59 889-947 815-873 (874)
341 PRK11352 regulator protein Frm 23.4 3.3E+02 0.0072 24.6 6.9 30 892-921 6-35 (91)
342 PRK14011 prefoldin subunit alp 23.3 7.3E+02 0.016 24.5 16.9 47 869-915 61-111 (144)
343 COG4396 Mu-like prophage host- 23.2 4.4E+02 0.0094 25.5 7.8 58 892-955 18-75 (170)
344 PF11559 ADIP: Afadin- and alp 23.2 2.5E+02 0.0053 27.7 6.8 22 893-914 60-81 (151)
345 PF10186 Atg14: UV radiation r 23.1 2.3E+02 0.0049 31.1 7.4 25 892-916 84-108 (302)
346 PF15456 Uds1: Up-regulated Du 23.1 3.3E+02 0.0072 26.1 7.2 23 933-955 87-109 (124)
347 PF04918 DltD_M: DltD central 23.0 36 0.00078 34.2 0.8 18 403-420 23-40 (163)
348 TIGR01730 RND_mfp RND family e 23.0 3.8E+02 0.0082 29.5 9.2 58 894-955 73-130 (322)
349 PF12325 TMF_TATA_bd: TATA ele 22.7 2.8E+02 0.0061 26.4 6.7 21 891-911 22-42 (120)
350 PF08317 Spc7: Spc7 kinetochor 22.7 2E+02 0.0042 32.5 6.7 23 928-950 245-267 (325)
351 cd00890 Prefoldin Prefoldin is 22.3 4.8E+02 0.01 24.5 8.5 38 918-955 78-115 (129)
352 PF05529 Bap31: B-cell recepto 22.3 2.7E+02 0.0058 28.6 7.2 29 927-955 154-182 (192)
353 PF13805 Pil1: Eisosome compon 22.2 3.1E+02 0.0067 30.0 7.6 64 884-955 130-193 (271)
354 smart00787 Spc7 Spc7 kinetocho 22.0 2E+02 0.0044 32.2 6.5 25 928-952 240-264 (312)
355 PF06305 DUF1049: Protein of u 21.9 77 0.0017 26.4 2.5 23 889-911 45-67 (68)
356 PF08614 ATG16: Autophagy prot 21.9 1.8E+02 0.004 30.0 5.9 26 890-915 114-139 (194)
357 PHA02629 A-type inclusion body 21.9 3.4E+02 0.0073 21.5 5.6 51 908-958 5-57 (61)
358 PF04156 IncA: IncA protein; 21.8 3.1E+02 0.0068 28.0 7.6 28 927-954 123-150 (191)
359 KOG2144 Tyrosyl-tRNA synthetas 21.7 36 0.00078 36.9 0.5 53 537-593 175-229 (360)
360 PRK01203 prefoldin subunit alp 21.6 7.5E+02 0.016 24.0 13.5 42 869-913 60-101 (130)
361 PHA02562 46 endonuclease subun 21.4 2.2E+02 0.0049 34.4 7.5 67 888-954 216-282 (562)
362 TIGR01000 bacteriocin_acc bact 21.4 2.1E+02 0.0044 34.0 6.9 65 889-954 240-311 (457)
363 PRK13599 putative peroxiredoxi 21.1 95 0.0021 32.7 3.6 51 346-403 119-171 (215)
364 PF14197 Cep57_CLD_2: Centroso 21.1 3.6E+02 0.0078 23.0 6.3 15 937-951 50-64 (69)
365 PF12718 Tropomyosin_1: Tropom 20.9 3.1E+02 0.0067 26.9 6.9 60 889-952 32-98 (143)
366 PTZ00009 heat shock 70 kDa pro 20.8 3.2E+02 0.0069 34.0 8.6 56 900-955 540-603 (653)
367 cd00584 Prefoldin_alpha Prefol 20.7 7.2E+02 0.016 23.5 13.2 44 870-913 61-108 (129)
368 PF10359 Fmp27_WPPW: RNA pol I 20.7 3.2E+02 0.0068 32.6 8.2 62 893-955 164-228 (475)
369 cd04781 HTH_MerR-like_sg6 Heli 20.7 3.6E+02 0.0078 25.4 7.1 58 897-958 48-105 (120)
370 TIGR02044 CueR Cu(I)-responsiv 20.4 2.7E+02 0.0058 26.6 6.2 63 895-957 47-109 (127)
371 PF11853 DUF3373: Protein of u 20.2 88 0.0019 37.0 3.3 26 890-916 23-48 (489)
372 PRK05431 seryl-tRNA synthetase 20.1 2.9E+02 0.0062 32.5 7.6 61 889-953 39-99 (425)
No 1
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.5e-227 Score=1970.75 Aligned_cols=872 Identities=51% Similarity=0.927 Sum_probs=812.9
Q ss_pred CCCCCCh-hhHHHHHHHHHhCCCCCCCCCCCCCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCC
Q 002136 59 LPKTFDF-TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTD 137 (961)
Q Consensus 59 ~~~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D 137 (961)
|++.||| ++|++||++|+++|+|++..+.+.++|+|.+|||||||.||||||+++|++|+++||+||+||+|+|+||||
T Consensus 1 ~~~~ydp~~iE~k~~~~W~~~~~f~~~~~~~~~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~D 80 (877)
T COG0525 1 LPKTYDPKEIEEKWYKKWEESGYFKPDPNEDKPPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTD 80 (877)
T ss_pred CCCCCChhhhhHHHHHHHHhcCCccCCCCCCCCCcEEeCCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCC
Confidence 5789999 899999999999999999866442669999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHH
Q 002136 138 HAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLH 217 (961)
Q Consensus 138 ~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~ 217 (961)
|||||||.+||+++.++|+++++++||+|+++||+|++++++.|++||++||+|+||+|+||||||+++++|+++|++||
T Consensus 81 hAGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly 160 (877)
T COG0525 81 HAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLY 160 (877)
T ss_pred CCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHHH
Confidence 99999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCceEEcCeeeecCCCCCccccccccccccCCCeEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCchhhhhcc
Q 002136 218 EKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIG 297 (961)
Q Consensus 218 ~~GlIy~~~~~v~w~p~~~t~lsd~Ev~~~e~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~y~~l~g 297 (961)
++|||||++++|||||+|+|||||.||+|+|..|.+|||+|++++++.+|+|||||||||+||+||||||+|+||++|+|
T Consensus 161 ~~GlIYr~~~lVNWcP~~~TAiSd~EVe~~e~~g~L~~i~y~l~~~~~~i~VATTRPEtmlgdtAVaVhP~DeRYk~LvG 240 (877)
T COG0525 161 EKGLIYRGERLVNWCPKCRTAISDIEVEYKEVEGKLYYIKYPLADGDGYLVVATTRPETLLGDTAVAVHPDDERYKHLVG 240 (877)
T ss_pred HCCceeecCCcccCCCccccchhhhhhccceeeeeEEEEEEecCCCCceEEEEecCccccccceEEEECCCChhhHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeccCCCCCeeeeeecCccccCCCcceeEeCCCCChhHHHHHHHhCCCceeecCCCCccccccc-ccCCCchHHHHHH
Q 002136 298 MMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAG-LFRGLDRFEARKK 376 (961)
Q Consensus 298 ~~~~~P~~~~~~ipii~~~~V~~~~GTG~v~~~Pah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g-~~~G~~~~~ar~~ 376 (961)
+++++|+ .|++||||+|+|||++||||+||||||||++||++++||+||+++++|++|+++++++ +|+||+|++||++
T Consensus 241 k~v~lPl-~~r~IpIiaD~~VD~eFGTG~VkItpahD~nD~e~~krh~Lp~i~i~d~dG~in~~~~~~~~Gl~r~eAR~k 319 (877)
T COG0525 241 KEVILPL-VGREIPIIADEYVDPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDEDGRINEEAAGEFAGLDRFEARKK 319 (877)
T ss_pred CEEecCC-CCCeeeeecCcccCCcCCCceEEecCCCCchhhhhhhcCCCCceEEECCCCeeccCCccccCCCcHHHHHHH
Confidence 9999999 5899999999999999999999999999999999999999999999999999998885 9999999999999
Q ss_pred HHHHHHHcCCccccccccccCCcccCCCCceeeeeccceeeeccHHHHHHHHHHHcCCceeechhHHHHHHHHHhcCCCc
Q 002136 377 LWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDW 456 (961)
Q Consensus 377 i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~~l~DW 456 (961)
|++.|++.|++++.+++.|++|+|+|||+||||++++||||++..+++.+++++++|+++|+|++++++|.+|+++++||
T Consensus 320 Iv~~L~~~GlLvk~e~~~h~V~~~~R~g~~IEp~ls~QWfVk~~~la~~~l~~~~~g~i~f~P~~~~~~~~~W~~~i~DW 399 (877)
T COG0525 320 IVEDLEEQGLLVKIEPHKHSVGHCERCGTPIEPLLSKQWFVKVLELAKKALEAVKDGKIKFVPERMEKRYEDWMENIRDW 399 (877)
T ss_pred HHHHHHhCCCeEeeeeccccCccccCCCceeeeeecceeeEEhHhhHHHHHHHHhcCCceEecHHHHHHHHHHHhhCcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccCCCcccceEEEcCCcccEEEecChHHHHHHHHhhcCCCcccccCCCceeeeecCCCccccccCCCCCChhHHhh
Q 002136 457 CISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKK 536 (961)
Q Consensus 457 ~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvldtWf~S~l~~~~~~~~p~~~~~~~~~ 536 (961)
|||||+|||||||+|||.+ ++..+++.+..+....+ ..+....++||+|||||||||++|||+++|||+++ .+|++
T Consensus 400 cISRQlwwGh~IPvWy~~~-~g~v~v~~~~~~~~~~~--~~~~~~~~~qd~DVLDTWFSS~LwPfstlgWp~~t-~~l~~ 475 (877)
T COG0525 400 CISRQLWWGHRIPVWYCKE-CGNVVVAEEEPEDPAAA--EKCPKEELEQDEDVLDTWFSSSLWPFSTLGWPEET-PDLKK 475 (877)
T ss_pred eeeeeeecCcccceEEecC-CCcEEeCCccccchhhh--ccCchhcccCCcchhhhhhhcccccccccCCCCcc-hHHHh
Confidence 9999999999999999963 67788887744333221 11212568999999999999999999999999997 99999
Q ss_pred cCCcceEeeeccccccHHHHHHHHHhHhcCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHhC
Q 002136 537 FYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLG 616 (961)
Q Consensus 537 ~~P~d~~~~G~Dil~fw~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~ 616 (961)
|||+|++++|+||||||++||+|+++.++|+.||+.|++||+|+|.+|+|||||+||||||.++|++||||||||+|++.
T Consensus 476 fyPt~llvtG~DIIffWvarmi~~~~~~~~~~PFk~V~ihGLVrDe~G~KMSKS~GNvIDP~d~I~~yGaDAlRf~la~~ 555 (877)
T COG0525 476 FYPTDLLVTGHDIIFFWVARMIMRGLHLTGEVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDVIDKYGADALRFTLASL 555 (877)
T ss_pred cCCCccccccchhhHHHHHHHHHHHHHhcCCCCccEEEEeeeEEcCCCCCCcccCCCcCCHHHHHHHhChHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC-CCccccCHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHH
Q 002136 617 TA-GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVT 695 (961)
Q Consensus 617 ~~-~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~ 695 (961)
+. |+|++|+++++++++||+||+||+.||+++++.+..... ......+..|+||+++|+++++.|+
T Consensus 556 ~~~G~Di~~~~~~~~~~rnF~nKlWNa~Rfv~~~~~~~~~~~-------------~~~~~~~~~drWIls~l~~~v~~v~ 622 (877)
T COG0525 556 ASPGRDINFDEKRVEGYRNFLNKLWNATRFVLMNLDDLGPDD-------------LDLLALSLADRWILSRLNETVKEVT 622 (877)
T ss_pred cCCCcccCcCHHHHHHHHHHHHHHHhHHHHHHhcccccCccc-------------ccccccchHHHHHHHHHHHHHHHHH
Confidence 66 999999999999999999999999999999875544310 0002225789999999999999999
Q ss_pred HhhhcCChHHHHHHHHHHHHHhhhHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhcCC
Q 002136 696 ASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR 775 (961)
Q Consensus 696 ~a~e~~~f~~A~~~i~~f~~~~~~n~Yle~~K~~l~~~~~~~~~~~~~~~l~~vl~~~l~LL~Pf~P~itEeiw~~L~~~ 775 (961)
++|++|+|..|.+++|+|+|++|||||||++|++++++ ++.+.+++.+|+++|+.+++||||||||+||||||.++..
T Consensus 623 ~~ld~y~f~~a~~~ly~F~W~~fcD~YlEl~K~~l~~~--~~~~~~a~~tL~~vl~~~lrLLhPfmPfiTEei~q~l~~~ 700 (877)
T COG0525 623 EALDNYRFDEAARALYEFIWNDFCDWYLELAKPRLYGG--EEEKRAARATLYYVLDTLLRLLHPFMPFITEEIWQKLPGT 700 (877)
T ss_pred HHHHhhhHHHHHHHHHHHhHHHHHHHHHHHhhhhhcCc--HHHHHHHHHHHHHHHHHHHHHhCCCCccchHHHHHhcCCC
Confidence 99999999999999999999999999999999999986 5566799999999999999999999999999999999875
Q ss_pred CCceeecCCCCCCC-CCChHHHHHHHHHHHHHHHHHhhhhhcccCCCceeeEEEEcCHHHHHHHHhHHHHHHHHcCCccc
Q 002136 776 KEALIVSPWPQTSL-PRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISASIVANEEVIQYISKEKEVLALLSRLDLL 854 (961)
Q Consensus 776 ~~si~~~~wP~~~~-~~d~~~~~~~~~~~~~v~~ir~~r~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~i~~l~~~~~~ 854 (961)
+||+.++||+++. ..|+.+++.++.+.++|++||++|+++|+++++++++.+....+....++.+...|..+++++.
T Consensus 701 -~si~~~~~P~~~~~~~d~~a~~~~~~l~~ii~~iR~~r~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~- 778 (877)
T COG0525 701 -ESIHLASWPEVDEELIDEEAEKEFELLKEIISAIRNLRAEMNLSPSAPLKVVLVGSEELEDRLEANEDDIKGLANLEE- 778 (877)
T ss_pred -CeEEeccCCCcchhhccHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEeccHhHHHHHHHHHHHHHHhcCcce-
Confidence 6999999999974 7889999999999999999999999999999999999888446666778888889999988854
Q ss_pred cEEeecCCCCCCCCcEEEEecCCeEEEecCCCccChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHH
Q 002136 855 NVHFTESPPGDANQSVHLVASEGLEAYLPLADMVDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQE 934 (961)
Q Consensus 855 ~v~~~~~~~~~~~~~v~~~v~~~~~~~~~l~~~id~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~ 934 (961)
+.+.+..++.+..++. .+..+.++++++.|.||...|++||+|+++++++|++++++||+|++|+.|||++||+++++
T Consensus 779 -i~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~id~~~e~~rl~k~~~k~~~e~~~~~~kl~ne~f~~kAp~~vv~~e~~ 856 (877)
T COG0525 779 -LEILSPDPEEPPVEVT-AVVGGAELFLPLAGLIDLAAELARLEKELEKLEKEIDRIEKKLSNEGFVAKAPEEVVEKEKE 856 (877)
T ss_pred -eeecccCccccchhHH-hhhccceEEEeccchhhHHHHHhhHHHHHHHHHHHHHHHHHhhcchhhhhcCCHHHHHHHHH
Confidence 4454433322334454 45578899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002136 935 KAAEAEEKINLTKNRLAFLR 954 (961)
Q Consensus 935 kl~~~~~~l~~~~~~l~~l~ 954 (961)
|+++++.++++|++.|+.|+
T Consensus 857 ~~~~~~~~~~~l~~~l~~l~ 876 (877)
T COG0525 857 KLAEYQVKLAKLEERLAVLK 876 (877)
T ss_pred HHHhHHHHHHHHHHHHHHhc
Confidence 99999999999999999886
No 2
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.9e-212 Score=1786.91 Aligned_cols=884 Identities=50% Similarity=0.871 Sum_probs=827.1
Q ss_pred CCCCCCCCCh-hhHHHHHHHHHhCCCCCCCCC-CCCCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeec
Q 002136 56 KDTLPKTFDF-TSEERIYNWWESQGYFKPNFE-RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWL 133 (961)
Q Consensus 56 ~~~~~~~~~~-~~E~~~~~~W~~~~~f~~~~~-~~~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~ 133 (961)
..++++.|+| .+|..||.||++.|+|++... +....|+|+.||||+||.||||||++.+++|+++||+||.||.|+|+
T Consensus 39 ~~~~~~~y~p~~vE~~wy~ww~k~g~fkp~~~~~~~~~f~i~~PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~ 118 (995)
T KOG0432|consen 39 SGPLPAAYSPAYVESAWYKWWEKQGFFKPEYGPNPGGVFVIPLPPPNVTGSLHIGHALTVAIQDALARYNRMHGYQVLWV 118 (995)
T ss_pred CCcccccCCccchHHHHHHHHHHcCCCCcccCCCCCCcceeecCCCCcccccchhHHHHHHHHHHHHHHHHhcCCeeeec
Confidence 5678899999 899999999999999999876 34678999999999999999999999999999999999999999999
Q ss_pred CCCCCCCchHHHHHHHHHHHcC-CCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHH
Q 002136 134 PGTDHAGIATQLVVEKMLAAEG-IKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEA 212 (961)
Q Consensus 134 ~G~D~~Gl~~q~~vek~l~~~g-~~~~~~~~~~f~~~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~ 212 (961)
||+||+||+||.+|||.+.++| ++++++||++|++++|+|++++++.|.+||++||.|+||+|++||||++.+++|.++
T Consensus 119 PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~~~vw~Wk~e~g~~I~~Qlk~lGas~DW~re~fTmD~~~s~AV~eA 198 (995)
T KOG0432|consen 119 PGTDHAGIATQVVVEKQLAREGGKTRHDLGREEFLKEVWEWKEEYGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVTEA 198 (995)
T ss_pred CCccccchhHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHHHHhCccHHHHHHHhcCcccccHhhcccCHHHHHHHHHH
Confidence 9999999999999999997665 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCceEEcCeeeecCCCCCccccccccccccC----------------CCeEEEEEEEecCCCeeEEEEecCCCc
Q 002136 213 FIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEE----------------PGTLYYIKYRVAGRSDFLTIATTRPET 276 (961)
Q Consensus 213 F~~L~~~GlIy~~~~~v~w~p~~~t~lsd~Ev~~~e~----------------~~~~~~~~~~~~~~~~~l~v~TtrPeT 276 (961)
|++||++|+|||+.+.|||||.++|+|||.||+|.+. +|.++.|+|++.+++..|+|+||||||
T Consensus 199 FvrL~eeglIyR~~rlVNW~~~L~saiSdiEVe~~ei~~~t~l~vpGyd~~VeFG~L~~faY~v~gs~~~i~VaTTRpET 278 (995)
T KOG0432|consen 199 FVRLHEEGLIYRANRLVNWCPALRSAISDIEVESVEIPGRTLLSVPGYDTKVEFGVLYSFAYPVEGSDEEIVVATTRPET 278 (995)
T ss_pred HHHHHhcCceEecCceeeechhHHhhhhhheecceecCCCceEecCCCCcceeeeeeeEEEEeccCCCCeEEEecCCccc
Confidence 9999999999999999999999999999999998874 488999999999999999999999999
Q ss_pred cCCCcEEEECCCCchhhhhccCeeeccCCCCCeeeeeecCccccCCCcceeEeCCCCChhHHHHHHHhCCCceeecCCCC
Q 002136 277 LFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDG 356 (961)
Q Consensus 277 l~g~~av~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~v~~~Pah~~~D~~~~~~~~l~~~~~~~~~G 356 (961)
|+||+||||||+|+||++++|+.++|||+ ++.+|||.|.+|||+||||+||||||||++||++|+|||||.+++++++|
T Consensus 279 ~lGDvAvAVhP~D~RYk~lhGk~~~hP~~-~r~lPiI~D~~Vd~~fGTGaVKITPaHd~nDyEvgkRh~L~~~ni~~~dG 357 (995)
T KOG0432|consen 279 ILGDVAVAVHPDDDRYKHLHGKFVKHPFT-GRKLPIICDIAVDMEFGTGAVKITPAHDPNDYEVGKRHNLEFINIFTDDG 357 (995)
T ss_pred cccceeEEeCCCCcccccccCceeecCCC-CCccceeecccccccccccceEecCCCChhHHHHHHhcCCCceeEEcCCC
Confidence 99999999999999999999999999996 99999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCchHHHHHHHHHHHHHcCCccccccccccCCcccCCCCceeeeeccceeeeccHHHHHHHHHHHcCCce
Q 002136 357 TLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELT 436 (961)
Q Consensus 357 ~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~qwF~~~~~~~~~~~~~~~~~~~~ 436 (961)
.+++.||+|+||+||+||++|++.|+|.|++...+++++.+|+|+|||++|||++.+|||++++++++++++++++|+++
T Consensus 358 ~l~~~~gef~Gm~RFeAR~kvv~~L~e~gL~~g~~~h~mvlpiCSRsgDVIEpllkpQW~v~c~ema~~A~~av~sG~L~ 437 (995)
T KOG0432|consen 358 LLNNVCGEFKGMKRFEAREKVVEKLKELGLYVGKENHPMVLPICSRSGDVIEPLLKPQWFVSCKEMAKKALKAVESGKLE 437 (995)
T ss_pred ceeccchhccCcHHHHHHHHHHHHHHHhhhhhccCCCceeccccCCCCCcccccccchheeehHHHHHHHHHHHhcCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eechhHHHHHHHHHhcCCCceeeeccCCCcccceEEEcC-----CcccEEEecChHHHHHHHHhhcC--CCcccccCCCc
Q 002136 437 IMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVG-----KEEEYIVARNADEALEKAHQKYG--KNVEIYQDPDV 509 (961)
Q Consensus 437 ~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~pIP~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~dv 509 (961)
+.|+..++.|.+|+++++|||||||+||||+||+|++.- .++.|+++++++++++++.+++| +.+.++||+||
T Consensus 438 i~P~~~~k~w~~W~~~i~DWCiSRQLWWGHrIPAy~v~~~~~~~ee~~WvvarseeeA~ekaa~k~g~~~~~~L~qDpDV 517 (995)
T KOG0432|consen 438 ILPEFHEKEWYRWLENIRDWCISRQLWWGHRIPAYFVNLSDGRAEEDYWVVARSEEEAREKAAEKFGPGKEFTLEQDPDV 517 (995)
T ss_pred ECchHHHHHHHHHHhhccccchhhhhhhccccceeeeecccCCCccceeEEeCCHHHHHHHHHHHhCCcccceeecCccH
Confidence 999999999999999999999999999999999999841 25679999999999999999885 67889999999
Q ss_pred eeeeecCCCccccccCCCCCChhHHhhcCCcceEeeeccccccHHHHHHHHHhHhcCCCCceEEEEeceEEcCCCccccc
Q 002136 510 LDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSK 589 (961)
Q Consensus 510 ldtWf~S~l~~~~~~~~p~~~~~~~~~~~P~d~~~~G~Dil~fw~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G~KMSK 589 (961)
||||||||+|||+++|||+++ ++|+.|||.+++.||+||+|||++||+|+|+.++|++||++|++||+|+|.+||||||
T Consensus 518 LDTWFSS~L~PfS~lGWP~~t-~d~~~fyP~sllETG~DILfFWVaRMvmLg~kLtG~lPF~~V~LH~mVRDa~GRKMSK 596 (995)
T KOG0432|consen 518 LDTWFSSGLWPFSTLGWPEET-KDFKNFYPLSLLETGHDILFFWVARMVMLGLKLTGELPFKEVLLHGLVRDAHGRKMSK 596 (995)
T ss_pred HHhhhhcccccchhcCCcccc-ccHHhcCCchhhhcCchHHHHHHHHHHHhhhhhcCCCCchheeechhhccccccccch
Confidence 999999999999999999988 9999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccCchhhhh-------------------------------------hcChhHHHHHHHhCCC-CCccccCHHHHHH
Q 002136 590 TLGNVIDPIDTIK-------------------------------------EFGADALRFTISLGTA-GQDLSLSIERLTA 631 (961)
Q Consensus 590 S~GNvI~p~dii~-------------------------------------~yGaDalR~~L~~~~~-~~D~~f~~~~~~~ 631 (961)
|+||||||.|+|+ ++|+|||||.||+.+. ++|+++|..++.+
T Consensus 597 SLGNVIDPlDVI~Gisle~L~~~L~~gNLdp~Ev~~a~~gq~kdFPnGIpeCGtDALRFaL~s~~~~~~dInLDv~rv~g 676 (995)
T KOG0432|consen 597 SLGNVIDPLDVIDGISLEKLHAKLLSGNLDPREVEKAKKGQKKDFPNGIPECGTDALRFALCSYTTQGRDINLDVLRVEG 676 (995)
T ss_pred hhccccCHHHHhccccHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHccccCccccccHHHHhh
Confidence 9999999999998 6799999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCC-CCchhhHHHHHhhccchhhhhcCC-CchhHHHHHHHHHHHHHHHHhhhcCChHHHHHH
Q 002136 632 NKAFTNKLWNAGKFILQNLPS-QNDISRWEILLAYKFDEEECLCKA-PLPECWVVSKLHMLIDTVTASYDKYFFGDVGRE 709 (961)
Q Consensus 632 ~~~~~nkl~N~~rf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~ 709 (961)
+++|||||||+.||+++.+.. +.+.. ..+...- ...|+||+++|+.+++.++++|+.|+|..|+.+
T Consensus 677 ~r~FcNKlWNa~rF~l~~lg~~~~p~~------------~~~~~~~~~~~d~WIlsrL~~av~~~~~~~~~~~f~~at~a 744 (995)
T KOG0432|consen 677 YRHFCNKLWNATRFALQRLGENFVPSP------------TEDLSGNESLVDEWILSRLAEAVEEVNESLEARNFHLATSA 744 (995)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCc------------ccccCCCcchhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 999999999999999987532 22200 0011111 228999999999999999999999999999999
Q ss_pred HHHHHHHhhhHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhcCCCC----ceeecCCC
Q 002136 710 TYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKE----ALIVSPWP 785 (961)
Q Consensus 710 i~~f~~~~~~n~Yle~~K~~l~~~~~~~~~~~~~~~l~~vl~~~l~LL~Pf~P~itEeiw~~L~~~~~----si~~~~wP 785 (961)
+++|+.+++||.|||.+|+.++.+ +...+..+..+|+.|++..|+||||||||+||||||+|+.+.+ ||+.++||
T Consensus 745 ~~~Fwl~~lCDVYlE~~Kp~l~~~-~~~~~~~a~~vL~~~ld~gLrll~PfMPFvtEel~qrlP~r~~~~~~si~va~yP 823 (995)
T KOG0432|consen 745 LYAFWLYDLCDVYLEATKPLLWGD-SEALAYEARRVLYRCLDNGLRLLHPFMPFITEELWQRLPRRKGSKPASISVSPYP 823 (995)
T ss_pred HHHHHHHHHHHHHHHHhhHHhcCC-cHHHHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHhcccCCCCCCCceEecCCC
Confidence 999999999999999999998875 4567788999999999999999999999999999999987644 89999999
Q ss_pred CCC-CCCChHHHHHHHHHHHHHHHHHhhhhhcccCCCceeeEEEE-cCHHHHHHHHhHHHHHHHHcCCccccEEeecCCC
Q 002136 786 QTS-LPRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISASIV-ANEEVIQYISKEKEVLALLSRLDLLNVHFTESPP 863 (961)
Q Consensus 786 ~~~-~~~d~~~~~~~~~~~~~v~~ir~~r~~~~i~~~~~~~~~i~-~~~~~~~~~~~~~~~i~~l~~~~~~~v~~~~~~~ 863 (961)
... .+.|+++|..|+.++++++.+|++|+.|+++++.+..+++. +.+.....++.+.+.+.+++++.. +.+....+
T Consensus 824 ~~~~~~~~~e~E~~~~~v~~i~~~iRslra~y~l~~~~~~~v~~~~s~~~~~~~~~~~~~~i~~l~~~~~--v~i~~~~~ 901 (995)
T KOG0432|consen 824 SSNELWRNEELESAFELVLAITRAIRSLRAEYNLSPKPRGSVFIASSDEEDKSILKEFLDEISTLTNLEL--VSISSPAE 901 (995)
T ss_pred chhcccCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCcchhHHHHHHHHHHHhhccce--eEeccCCc
Confidence 544 48999999999999999999999999999998667888877 333335667888888999988864 45555555
Q ss_pred CCCCCcEEEEecCCeEEEecCCCccChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHH
Q 002136 864 GDANQSVHLVASEGLEAYLPLADMVDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKI 943 (961)
Q Consensus 864 ~~~~~~v~~~v~~~~~~~~~l~~~id~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l 943 (961)
..+.+++..++++++++|+++.|.+|++.|+.||.||+.|+|+++++++.++++++|..|||.++++.+++|++++++++
T Consensus 902 ~~~~g~~~~~~~~~~~v~l~l~g~vd~~~e~~kl~kkl~klqk~~~~l~~r~~~~~~~~k~p~~v~~~~~~Kl~~~~~ei 981 (995)
T KOG0432|consen 902 EDAQGCALSVASSDCQVYLPLKGLVDPDSEIQKLAKKLEKLQKQLDKLQARISSSDYQEKAPLEVKEKNKEKLKELEAEI 981 (995)
T ss_pred cccCcceEeccCCceEEEEEeccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHHHH
Confidence 55678999899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 002136 944 NLTKNRLAFLRST 956 (961)
Q Consensus 944 ~~~~~~l~~l~~~ 956 (961)
+.+.++++.++++
T Consensus 982 ~~~~~~~~~l~~~ 994 (995)
T KOG0432|consen 982 ENLKAALANLKSL 994 (995)
T ss_pred HHHHHHHhhcccC
Confidence 9999999999875
No 3
>PLN02943 aminoacyl-tRNA ligase
Probab=100.00 E-value=3.3e-201 Score=1852.76 Aligned_cols=904 Identities=88% Similarity=1.391 Sum_probs=821.2
Q ss_pred cCCCCCCCCCCChhhHHHHHHHHHhCCCCCCCCCCCCCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeee
Q 002136 53 ENNKDTLPKTFDFTSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLW 132 (961)
Q Consensus 53 ~~~~~~~~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~ 132 (961)
..+.++|++.|||..|++||++|+++++|++..+.++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|
T Consensus 51 ~~~~~~~~~~y~~~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~ 130 (958)
T PLN02943 51 VFTSPETAKSFDFTSEERIYNWWESQGYFKPNFDRGGDPFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLW 130 (958)
T ss_pred hhcccccCCCCChhhhHHHHHHHHHCCCcccCcccCCCCEEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeec
Confidence 34457899999993399999999999999998765678899999999999999999999999999999999999999999
Q ss_pred cCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHH
Q 002136 133 LPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEA 212 (961)
Q Consensus 133 ~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~ 212 (961)
+|||||||||||.+||+.+++.|+++.++||++|+++||+|++++++.|++||++||+++||+|+|+||||+|+++|+++
T Consensus 131 ~~G~D~~Gl~~e~~vek~l~~~~~~~~~~~re~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~ 210 (958)
T PLN02943 131 IPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEFTKRVWEWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEA 210 (958)
T ss_pred CCCCCcccchhHHHHHHHHHHcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHH
Confidence 99999999999999999998899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCceEEcCeeeecCCCCCccccccccccccCCCeEEEEEEEecCCC-eeEEEEecCCCccCCCcEEEECCCCch
Q 002136 213 FIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRS-DFLTIATTRPETLFGDVALAVNPQDEH 291 (961)
Q Consensus 213 F~~L~~~GlIy~~~~~v~w~p~~~t~lsd~Ev~~~e~~~~~~~~~~~~~~~~-~~l~v~TtrPeTl~g~~av~v~P~~~~ 291 (961)
|.+||++|||||+.++|||||.|+|+|||+||+|++..|.++||+|++.+++ .+|+|||||||||+||+||||||+|+|
T Consensus 211 F~~l~~~Gliyr~~~~V~wcp~~~Tals~~Evey~e~~~~~~~i~f~l~~~~~~~l~vaTTrPeTl~~~~avavnP~d~r 290 (958)
T PLN02943 211 FVRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGGSEDFLTIATTRPETLFGDVAIAVNPEDDR 290 (958)
T ss_pred HHHHHHCCCEEecCceeccCCCCCCCcCHHHhhcccccccEEEEEEEEcCCCCCEEEEEeCChhhhhcceEEEECCCCHH
Confidence 9999999999999999999999999999999999999999999999998755 799999999999999999999999999
Q ss_pred hhhhccCeeeccCCCCCeeeeeecCccccCCCcceeEeCCCCChhHHHHHHHhCCCceeecCCCCcccccccccCCCchH
Q 002136 292 YSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRF 371 (961)
Q Consensus 292 y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~v~~~Pah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~ 371 (961)
|++|+|++++||++.|+.+|||+|+||+++||||+||+|||||++||++|++||||+++++|++|+|++.+|.| |+
T Consensus 291 y~~l~g~~~~~Pl~~~~~ipii~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~g~~----~~ 366 (958)
T PLN02943 291 YSKYIGKMAIVPMTYGRHVPIIADRYVDKDFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLY----WF 366 (958)
T ss_pred HHHHcCCEEECCCcCCCeeeEEecCcccCCCCCceEEeCCCCChHHHHHHHHcCCCceeeeCCCceeeccCCcc----HH
Confidence 99999999999995489999999999999999999999999999999999999999999999999999876555 99
Q ss_pred HHHHHHHHHHHHcCCccccccccccCCcccCCCCceeeeeccceeeeccHHHHHHHHHHHcCCceeechhHHHHHHHHHh
Q 002136 372 EARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS 451 (961)
Q Consensus 372 ~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~ 451 (961)
|||++|+++|++.|++++.+++.|++|+|||||+|||+++++||||+++++++++++++++++++|+|+++++++.+||+
T Consensus 367 ear~~iv~~L~~~g~l~~~e~~~~~~p~c~R~~~~Ie~~~~~QWFi~~~~l~~~~l~~v~~~~i~~~P~~~~~~~~~wl~ 446 (958)
T PLN02943 367 EAREKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALKAVENGELTIIPERFEKIYNHWLS 446 (958)
T ss_pred HHHHHHHHHHHHCCCeeeeeeeecCCCeeCCCCcEeEEEeccceeEEHHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred cCCCceeeeccCCCcccceEEEcCC-cc-cEEEecChHHHHHHHHhhcCCCcccccCCCceeeeecCCCccccccCCCCC
Q 002136 452 NIKDWCISRQLWWGHRIPVWYIVGK-EE-EYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDV 529 (961)
Q Consensus 452 ~l~DW~ISRq~~WG~pIP~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvldtWf~S~l~~~~~~~~p~~ 529 (961)
+++|||||||||||||||+|+|+++ ++ .|+++.+.++++..+...+|.+..+.|++|||||||||++||++++|||..
T Consensus 447 ~l~DWcISRQr~WG~pIP~w~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~DVlDtWFdS~l~p~s~lgwp~~ 526 (958)
T PLN02943 447 NIKDWCISRQLWWGHRIPVWYIVGKDCEEDYIVARSAEEALEKAREKYGKDVEIYQDPDVLDTWFSSALWPFSTLGWPDV 526 (958)
T ss_pred cCccceEEEecCCCCccCceeccccCCCceEEecCcHHHHHHHhhhhcCCchheeecCceEEEEEcCccchHHhcCCCcc
Confidence 9999999999999999999998532 23 388888888887777667776667899999999999999999999999986
Q ss_pred ChhHHhhcCCcceEeeeccccccHHHHHHHHHhHhcCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHH
Q 002136 530 SADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADAL 609 (961)
Q Consensus 530 ~~~~~~~~~P~d~~~~G~Dil~fw~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDal 609 (961)
+.++|++|||+|++++|+||+|||+++|+++|+.++|++||++|++||+++|.+|+|||||+||+|+|.+++++||+|++
T Consensus 527 ~~~~~~~~yP~dl~~~G~Dii~fW~a~m~~~~~~~~~~~Pf~~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~~ygaDal 606 (958)
T PLN02943 527 SAEDFKKFYPTTVLETGHDILFFWVARMVMMGIEFTGTVPFSYVYLHGLIRDSQGRKMSKTLGNVIDPLDTIKEFGTDAL 606 (958)
T ss_pred ChHHHhccCCCeEEEEeehHHHHHHHHHHHhhhhhcCCCChheEEEeccEECCCCCcccCcCCCCCCHHHHHHhcCChHH
Confidence 44789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHH
Q 002136 610 RFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHM 689 (961)
Q Consensus 610 R~~L~~~~~~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~ 689 (961)
||||++.++++|++|+++.+.+++++++||||+++|+++++.+.........+....++.......++..|+||+++++.
T Consensus 607 R~~l~~~~~~~d~~fs~~~l~~~~~~~~kl~N~~rf~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~wilskl~~ 686 (958)
T PLN02943 607 RFTLALGTAGQDLNLSTERLTSNKAFTNKLWNAGKFVLQNLPSQSDTSAWEHILACKFDKEESLLSLPLPECWVVSKLHE 686 (958)
T ss_pred HHHHHhCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccCCccccccccCHHHHHHHHHHHH
Confidence 99999876699999999999999999999999999998876432110000000000000000112356789999999999
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhhHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHH
Q 002136 690 LIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELW 769 (961)
Q Consensus 690 ~~~~v~~a~e~~~f~~A~~~i~~f~~~~~~n~Yle~~K~~l~~~~~~~~~~~~~~~l~~vl~~~l~LL~Pf~P~itEeiw 769 (961)
++++++++|++|+|+.|++.+++|+|+++|||||+.+|++++++++...+.+++.+++++++.+++||||||||+|||||
T Consensus 687 ~i~~v~~~~e~y~f~~A~~~i~~f~~~~~~d~YiE~~Kprl~~~~~~~~~~~a~~vL~~vl~~ll~LL~PfmPfitEELw 766 (958)
T PLN02943 687 LIDSVTTSYDKYFFGDVGREIYDFFWSDFADWYIEASKTRLYHSGDNSALSRAQAVLLYVFENILKLLHPFMPFVTEELW 766 (958)
T ss_pred HHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhccHhhccCCchHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHH
Confidence 99999999999999999999999999999999999999999876444456788999999999999999999999999999
Q ss_pred HHhcCCCCceeecCCCCCCCCCChHHHHHHHHHHHHHHHHHhhhhhcccCCCceeeEEEEcCHHHHHHHHhHHHHHHHHc
Q 002136 770 QSLRKRKEALIVSPWPQTSLPRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISASIVANEEVIQYISKEKEVLALLS 849 (961)
Q Consensus 770 ~~L~~~~~si~~~~wP~~~~~~d~~~~~~~~~~~~~v~~ir~~r~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~i~~l~ 849 (961)
+.|+.+++||+.++||+.+...|+++++.++.++++|+++|++|++++++++.++.+++.+..+..+.+......|+.|+
T Consensus 767 q~L~~~~~si~~~~wP~~~~~~d~~~~~~~~~v~~ii~~iR~~r~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~i~~l~ 846 (958)
T PLN02943 767 QALPYRKEALIVSPWPQTSLPKDLKSIKRFENLQSLTRAIRNARAEYSVEPAKRISASIVASAEVIEYISKEKEVLALLS 846 (958)
T ss_pred HHcCCCCCceeecCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccEEEecChhHHHHHHHHHHHHHHHh
Confidence 99986667999999999876668889999999999999999999999999999999887744455677888889999999
Q ss_pred CCccccEEeecCCCCCCCCcEEEEecCCeEEEecCCCccChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHH
Q 002136 850 RLDLLNVHFTESPPGDANQSVHLVASEGLEAYLPLADMVDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVV 929 (961)
Q Consensus 850 ~~~~~~v~~~~~~~~~~~~~v~~~v~~~~~~~~~l~~~id~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv 929 (961)
+++...+.+.+..+....+++..++..++++++++.|+||+++|++||+|++++++++++++++||+|++|++|||++||
T Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~iD~~~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP~evv 926 (958)
T PLN02943 847 RLDLQNVHFTDSPPGDANQSVHLVASEGLEAYLPLADMVDISAEVERLSKRLSKMQTEYDALAARLSSPKFVEKAPEDVV 926 (958)
T ss_pred cCcccccccccCCCccccceeEEEecCceEEEEeccccccHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHH
Confidence 87544454433322212235655666789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 002136 930 RGVQEKAAEAEEKINLTKNRLAFLRSTVMVT 960 (961)
Q Consensus 930 ~~~~~kl~~~~~~l~~~~~~l~~l~~~~~~~ 960 (961)
+++++|+++++++++.+++.|+.|++++.+|
T Consensus 927 ~~e~~kl~~~~~~l~~~~~~l~~l~~~~~~~ 957 (958)
T PLN02943 927 RGVREKAAEAEEKIKLTKNRLAFLKSTSLVS 957 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 9999999999999999999999999988776
No 4
>PLN02381 valyl-tRNA synthetase
Probab=100.00 E-value=5.1e-198 Score=1830.81 Aligned_cols=886 Identities=41% Similarity=0.767 Sum_probs=810.6
Q ss_pred CCCCCCCCh-hhHHHHHHHHHhCCCCCCCCCCCCCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCC
Q 002136 57 DTLPKTFDF-TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (961)
Q Consensus 57 ~~~~~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G 135 (961)
..|++.||| .+|++||++|+++++|++..+.++++|+|++|||||||.||||||+++|++|+++||+||+||+|+|+||
T Consensus 94 ~~~~~~yd~~~iE~~w~~~W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G 173 (1066)
T PLN02381 94 SQMAKQYSPSAVEKSWYAWWEKSGYFGADAKSSKPPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPG 173 (1066)
T ss_pred hhcccCCCHHHHHHHHHHHHHHCCCccCCccCCCCcEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCC
Confidence 358899999 8999999999999999987666678899999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHH-HHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHH
Q 002136 136 TDHAGIATQLVVEKML-AAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFI 214 (961)
Q Consensus 136 ~D~~Gl~~q~~vek~l-~~~g~~~~~~~~~~f~~~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~ 214 (961)
|||||||||.+||+.+ .+.|+++.++||++|++.||+|++++++.|++||++||+|+||+|+|+|||++|+++|+++|.
T Consensus 174 ~D~~Glp~e~~vek~l~~~~~~~~~~~~re~f~~~~~~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~ 253 (1066)
T PLN02381 174 VDHAGIATQVVVEKKLMRERHLTRHDIGREEFVSEVWKWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEAFV 253 (1066)
T ss_pred CCCCcChHHHHHHHHhHhhcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHHHHHHH
Confidence 9999999999999988 457999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCceEEcCeeeecCCCCCccccccccccccCC----------------CeEEEEEEEecCCCeeEEEEecCCCccC
Q 002136 215 RLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEP----------------GTLYYIKYRVAGRSDFLTIATTRPETLF 278 (961)
Q Consensus 215 ~L~~~GlIy~~~~~v~w~p~~~t~lsd~Ev~~~e~~----------------~~~~~~~~~~~~~~~~l~v~TtrPeTl~ 278 (961)
+||++|||||+.++|||||.|+|+|||+||+|++.. |.+++|+|++.+++.+++|||||||||+
T Consensus 254 ~L~~~GlIyr~~~~VnWcP~~~TaLSd~EVey~d~~~~s~~~~~~~~~~~~~g~~~~~~Y~l~~~~~~i~vATtRpEti~ 333 (1066)
T PLN02381 254 RLYKEGLIYRDIRLVNWDCTLRTAISDVEVDYIDIKERTLLKVPGYDKPVEFGVLTSFAYPLEGGLGEIVVATTRIETML 333 (1066)
T ss_pred HHHHCCCEEeccccccCCCCCCCCccHHHhhhhccccchhhcccCCCcceeeEEEEEEEEEecCCCCEEEEecCCHHHHh
Confidence 999999999999999999999999999999998876 7788999999876678999999999999
Q ss_pred CCcEEEECCCCchhhhhccCeeeccCCCCCeeeeeecC-ccccCCCcceeEeCCCCChhHHHHHHHhCCCceeecCCCCc
Q 002136 279 GDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDK-YVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGT 357 (961)
Q Consensus 279 g~~av~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~-~V~~~~GTG~v~~~Pah~~~D~~~~~~~~l~~~~~~~~~G~ 357 (961)
|++||+|||+|+||++|+|++|.||| .++.+|||+|. ||++++|||+||+|||||++||++|++||||+++++|++|+
T Consensus 334 g~~avaV~P~d~ry~~L~G~~~~~Pl-~~~~ipIi~d~~~Vd~e~GTG~V~i~PaHd~~Dy~~~~~~~L~~i~~id~~G~ 412 (1066)
T PLN02381 334 GDTAIAIHPDDERYKHLHGKFAVHPF-NGRKLPIICDAILVDPNFGTGAVKITPAHDPNDFEVGKRHNLEFINIFTDDGK 412 (1066)
T ss_pred cccceeeCCCCcchhhhCCCEEECCC-CCCEEEEEECCccccccCCCCcEEecCCCChHHHHHHHHcCCCeeeeeCCCce
Confidence 99999999999999999999999999 58999999975 99999999999999999999999999999999999999999
Q ss_pred cccccc-ccCCCchHHHHHHHHHHHHHcCCccccccccccCCcccCCCCceeeeeccceeeeccHHHHHHHHHH---HcC
Q 002136 358 LNEVAG-LFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAV---EKG 433 (961)
Q Consensus 358 ~~~~~g-~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~qwF~~~~~~~~~~~~~~---~~~ 433 (961)
|++++| .|.||++++||++|++.|++.|++++.+++.|++|+||||++|||+++++||||+|+++++++++++ .++
T Consensus 413 ~~~~~~~~~~Gl~~~eAr~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~ie~~~~~QWFi~~~~l~~~al~av~~~~~~ 492 (1066)
T PLN02381 413 INSNGGSEFAGMPRFAAREAVIEALQKKGLYRGAKNNEMRLGLCSRTNDVVEPMIKPQWFVNCSSMAKQALDAAIDGENK 492 (1066)
T ss_pred eCCCCccccCCCCHHHHHHHHHHHHHhCCCEecceeeecCCCeeCCCCceEEEeecccceEEchHHHHHHHHHHhhccCC
Confidence 999875 8999999999999999999999999999999999999999999999999999999999999999999 678
Q ss_pred CceeechhHHHHHHHHHhcCCCceeeeccCCCcccceEEEc-CC---------cccEEEecChHHHHHHHHhhc-CCCcc
Q 002136 434 ELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIV-GK---------EEEYIVARNADEALEKAHQKY-GKNVE 502 (961)
Q Consensus 434 ~~~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~pIP~~~~~-~~---------~~~~~~~~~~~~~~~~~~~~~-~~~~~ 502 (961)
+++|+|++++++|.+||+|++|||||||||||||||+|||. ++ .+.|+++.+..+++..+...| |....
T Consensus 493 ~i~~~P~~~~~~~~~wl~n~~DWcISRQr~WG~pIPiw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (1066)
T PLN02381 493 KLEFIPKQYLAEWKRWLENIRDWCISRQLWWGHRIPAWYVTLEDDQLKELGSYNDHWVVARNESDALLEASQKFPGKKFE 572 (1066)
T ss_pred ceEEEChHHHHHHHHHHhcCccceeeeecccCCccceEEeccChhhcccCCcccceEEEccchHhhcchhhcccCCCccc
Confidence 99999999999999999999999999999999999999994 10 135677777776665544334 33346
Q ss_pred cccCCCceeeeecCCCccccccCCCCCChhHHhhcCCcceEeeeccccccHHHHHHHHHhHhcCCCCceEEEEeceEEcC
Q 002136 503 IYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDS 582 (961)
Q Consensus 503 ~~~~~dvldtWf~S~l~~~~~~~~p~~~~~~~~~~~P~d~~~~G~Dil~fw~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~ 582 (961)
++|++||||||||||+||++++|||.+. ++|++|||+|++++|+||+|||++||+++|+.++|+.||++|++||||+|.
T Consensus 573 ~~rd~DVlDtWF~Sg~~p~~~lg~P~~~-~~~~~~~P~d~~~~G~Dii~~W~~rmi~~~~~~~~~~PFk~v~~hG~V~D~ 651 (1066)
T PLN02381 573 LSQDPDVLDTWFSSGLFPLSVLGWPDDT-DDLKAFYPTSVLETGHDILFFWVARMVMMGMQLGGDVPFRKVYLHPMIRDA 651 (1066)
T ss_pred eeecCceeeEEEeCCchHHHHhcCCCCH-HHHhccCCCeeeeecchhhhhHHHHHHHHHHHhCCCCchHHheecceEECC
Confidence 8999999999999999999999999876 789999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCCccCchhhhh-------------------------------------hcChhHHHHHHHhCCC-CCcccc
Q 002136 583 QGRKMSKTLGNVIDPIDTIK-------------------------------------EFGADALRFTISLGTA-GQDLSL 624 (961)
Q Consensus 583 ~G~KMSKS~GNvI~p~dii~-------------------------------------~yGaDalR~~L~~~~~-~~D~~f 624 (961)
+|+|||||+||||||.++|+ +||||||||||++.++ ++|++|
T Consensus 652 ~G~KMSKS~GNvIdP~~vi~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~p~gi~~yGADalR~~l~~~~~~~~di~~ 731 (1066)
T PLN02381 652 HGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELVVAKEGQKKDFPNGIAECGTDALRFALVSYTAQSDKINL 731 (1066)
T ss_pred CCCCCCCCCCCCCCHHHHHhhcchhhHHHhhhccccchhhhhhHhhhccccCCCCccccChHHHHHHHHcCCccccccCc
Confidence 99999999999999999999 8999999999999887 999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhhhcCCh
Q 002136 625 SIERLTANKAFTNKLWNAGKFILQNLPS-QNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFF 703 (961)
Q Consensus 625 ~~~~~~~~~~~~nkl~N~~rf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f 703 (961)
+++.+.++++|||||||+++|+++++.+ +.+.. ......++..|+||+++|+.++++++++|++|+|
T Consensus 732 ~~~~v~~~r~f~nKlwNa~rf~~~~~~~~~~~~~------------~~~~~~~~~~DrWILskL~~~i~~v~~~~e~y~F 799 (1066)
T PLN02381 732 DILRVVGYRQWCNKLWNAVRFAMSKLGDDYTPPA------------TLSVETMPFSCKWILSVLNKAISKTVSSLDAYEF 799 (1066)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhcccccCccc------------ccCccccCHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 9999999999999999999999887642 21100 0011234668999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhhhhccCCC--hHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhcC-----CC
Q 002136 704 GDVGRETYDFFWSDFADWYIEASKARLYRSEY--DSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRK-----RK 776 (961)
Q Consensus 704 ~~A~~~i~~f~~~~~~n~Yle~~K~~l~~~~~--~~~~~~~~~~l~~vl~~~l~LL~Pf~P~itEeiw~~L~~-----~~ 776 (961)
+.|++++++|+|++||||||+.+|+|++++.. ...+++++.+|+.+++.+++||||||||+|||||+.|+. ..
T Consensus 800 ~~A~~~l~~F~~~dl~d~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~vL~~llrLL~PfmPfitEELw~~L~~~~~~~~~ 879 (1066)
T PLN02381 800 SDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPEFASERAAAQDTLWICLDTGLRLLHPFMPFVTEELWQRLPQPKDHTRK 879 (1066)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhHHHHccCCccccHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhccCCCC
Confidence 99999999999999999999999999987532 235667889999999999999999999999999999973 23
Q ss_pred CceeecCCCCCCC-CCChHHHHHHHHHHHHHHHHHhhhhhc-ccCCCceeeEEEE-cCHHHHHHHHhHHHHHHHHcCCcc
Q 002136 777 EALIVSPWPQTSL-PRHMSAIKRFENLQSLTRAIRNARAEY-SVEPAKRISASIV-ANEEVIQYISKEKEVLALLSRLDL 853 (961)
Q Consensus 777 ~si~~~~wP~~~~-~~d~~~~~~~~~~~~~v~~ir~~r~~~-~i~~~~~~~~~i~-~~~~~~~~~~~~~~~i~~l~~~~~ 853 (961)
+||++++||+++. +.|+++++.|+.++++|+.+|++|+++ +++++.+++++++ .+++..+.++.+...|+.|++++.
T Consensus 880 ~SI~~~~~P~~~~~~~d~~le~~~~~l~~ii~~iR~lR~~~~~i~~k~~~~~~~~~~~~~~~~~l~~~~~~i~~l~~~~~ 959 (1066)
T PLN02381 880 DSIMISEYPSAVEAWTNEKVEYEMDLVLSTVKCLRSLRAEVLEKQKNERLPAFALCRNQEIAAIIKSHQLEILTLANLSS 959 (1066)
T ss_pred CeeEeCCCCCCCchhCCHHHHHHHHHHHHHHHHHHHHHHHccccccCcCCcEEEEcCCHHHHHHHHHHHHHHHHhhCCCe
Confidence 6999999999874 778999999999999999999999999 7888888987766 566667888999999999998864
Q ss_pred ccEEee-cCCCCCCCCcEEEEecCCeEEEecCCCccChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHH
Q 002136 854 LNVHFT-ESPPGDANQSVHLVASEGLEAYLPLADMVDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGV 932 (961)
Q Consensus 854 ~~v~~~-~~~~~~~~~~v~~~v~~~~~~~~~l~~~id~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~ 932 (961)
+.++ ....+.|.+++..++..++++|+++.|+||+++|++||+|+++++++++++++++|+|++|++|||++||+++
T Consensus 960 --v~~~~~~~~~~~~~~~~~~v~~~~~~~l~l~~~iD~~~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP~~vve~e 1037 (1066)
T PLN02381 960 --LKVLLSENDAPPAGCAFENVNENLKVYLQAQGAVNAEAELEKLRNKMDEIQKQQEKLEKKMNASGYKEKVPANIQEED 1037 (1066)
T ss_pred --eeeeccccccCcccceeeEecCceEEEEECCcccCHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhcCCHHHHHHH
Confidence 4443 1111234567655666789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002136 933 QEKAAEAEEKINLTKNRLAFLRSTVM 958 (961)
Q Consensus 933 ~~kl~~~~~~l~~~~~~l~~l~~~~~ 958 (961)
++|+++++++++.+++.|+.|+++.-
T Consensus 1038 ~~kl~~~~~~l~~l~~~l~~l~~~~~ 1063 (1066)
T PLN02381 1038 ARKLTKLLQELEFFEKESKRLEAETS 1063 (1066)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999998653
No 5
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=100.00 E-value=2e-196 Score=1830.58 Aligned_cols=893 Identities=43% Similarity=0.795 Sum_probs=812.7
Q ss_pred CCCCCCCCCh-hhHHHHHHHHHhCCCCCCCC----CCCCCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCe
Q 002136 56 KDTLPKTFDF-TSEERIYNWWESQGYFKPNF----ERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPT 130 (961)
Q Consensus 56 ~~~~~~~~~~-~~E~~~~~~W~~~~~f~~~~----~~~~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~V 130 (961)
...+++.||| .+|++||++|+++++|++.. +.++++|+|++|||||||.||||||+|++++|+++||+||+|++|
T Consensus 21 ~~~~~~~yd~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v 100 (995)
T PTZ00419 21 ISSMAASYDPKEVESGWYEWWEKSGFFKPAEDAKSLNSGKKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDET 100 (995)
T ss_pred hhhcCCCCCHHHHHHHHHHHHHHCCCcccCccccccCCCCeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 3468999999 89999999999999999852 345788999999999999999999999999999999999999999
Q ss_pred eecCCCCCCCchHHHHHHHHH-HHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHH
Q 002136 131 LWLPGTDHAGIATQLVVEKML-AAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAV 209 (961)
Q Consensus 131 l~~~G~D~~Gl~~q~~vek~l-~~~g~~~~~~~~~~f~~~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v 209 (961)
+|++||||||||||.+||+.+ .+.|+++.+++|++|+++||+|++++++.|++||++||+++||+|+|+|+||+|.++|
T Consensus 101 ~~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f~~~~~~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~v 180 (995)
T PTZ00419 101 LWVPGTDHAGIATQVVVEKKLMKEENKTRHDLGREEFLKKVWEWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAV 180 (995)
T ss_pred cCCCCCCCCchhhHHHHHHHHHHhcCCChHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHHH
Confidence 999999999999999999988 5779999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCceEEcCeeeecCCCCCccccccccccccCC----------------CeEEEEEEEecCCCe-eEEEEec
Q 002136 210 VEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEP----------------GTLYYIKYRVAGRSD-FLTIATT 272 (961)
Q Consensus 210 ~~~F~~L~~~GlIy~~~~~v~w~p~~~t~lsd~Ev~~~e~~----------------~~~~~~~~~~~~~~~-~l~v~Tt 272 (961)
+++|.+||++|||||+.++|+|||.|+|+|||+||+|++.. |.++||+|++.+++. +|+||||
T Consensus 181 ~~~F~~l~~~Gliyr~~~~V~wcp~~~Talsd~EVe~~~~~~~~~~~~~~~~~~~~~g~l~~i~f~l~~~~~~~l~vaTT 260 (995)
T PTZ00419 181 KEAFVRLYEDGLIYRDTRLVNWCCYLKTAISDIEVEFEEIEKPTKITIPGYDKKVEVGVLWHFAYPLEDSGQEEIVVATT 260 (995)
T ss_pred HHHHHHHHHCCCEEecceeeecCCCCCCCCchhhcccccccccceeeccccccccccceeEEEEEeecCCCCcEEEEEeC
Confidence 99999999999999999999999999999999999999877 888999999987665 9999999
Q ss_pred CCCccCCCcEEEECCCCchhhhhccCeeeccCCCCCeeeeeecC-ccccCCCcceeEeCCCCChhHHHHHHHhCCCceee
Q 002136 273 RPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDK-YVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNV 351 (961)
Q Consensus 273 rPeTl~g~~av~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~-~V~~~~GTG~v~~~Pah~~~D~~~~~~~~l~~~~~ 351 (961)
|||||+||+||||||+|+||++|+|++|.||+..++.+|||+++ ||++++|||+||+|||||++||++|++||||++++
T Consensus 261 rPeTl~g~~avav~P~d~~y~~l~G~~~~~Pl~~~~~ipii~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~ 340 (995)
T PTZ00419 261 RIETMLGDVAVAVHPKDERYKKLHGKELIHPFIPDRKIPIIADDELVDMEFGTGAVKITPAHDPNDYEIAKRHNLPFINI 340 (995)
T ss_pred CcchhhhCeEEEECCCCcHHHHhcCCEEECCccCCCEEEEEeCCcccCCCcCCCCeEeCCCCChHHHHHHHHcCCCeeee
Confidence 99999999999999999999999999999999337999999999 99999999999999999999999999999999999
Q ss_pred cCCCCcccccccccCCCchHHHHHHHHHHHHHcCCccccccccccCCcccCCCCceeeeeccceeeeccHHHHHHHHHHH
Q 002136 352 MNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVE 431 (961)
Q Consensus 352 ~~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~qwF~~~~~~~~~~~~~~~ 431 (961)
+|++|+|++++|.|.|++++|||++|++.|++.|++++.+++.|++|+|||||+|||+++++||||+|++++++++++++
T Consensus 341 i~~~G~~~~~~~~~~Gl~~~~ar~~ii~~L~~~g~l~~~~~~~~~~p~~~R~~~~ie~~~~~QWFi~~~~~~~~al~~v~ 420 (995)
T PTZ00419 341 FTLDGKINENGGEFAGMHRFDCRRKIEEELKEMGLLRDKVPNPMRLPRCSRSGDIVEPMLIPQWYVNCKDMAKRAVEAVR 420 (995)
T ss_pred eCCCceEcCCCcccCCCCHHHHHHHHHHHHHhcCCEEeeEEeecCCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeechhHHHHHHHHHhcCCCceeeeccCCCcccceEEEcCC--------cccEEEecChHHHHHHHHhhcCC---C
Q 002136 432 KGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK--------EEEYIVARNADEALEKAHQKYGK---N 500 (961)
Q Consensus 432 ~~~~~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~pIP~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~---~ 500 (961)
+++++|+|+.+++++.+||++++|||||||||||||||+|||... .+.|++..+.++++..+...++. +
T Consensus 421 ~~~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (995)
T PTZ00419 421 NGELKIIPSSHENVWYHWLENIQDWCISRQLWWGHRIPAYRVISKGPETDPSDEEPWVVARSEEEALEKAKKKFGLSEED 500 (995)
T ss_pred cCCeEEEChHHHHHHHHHHhccccceeeeecccCceeeEEEeCCCCccccCCCCceEEEcCCHHHHHhhhccccCCcccc
Confidence 999999999999999999999999999999999999999999641 23466677777766654333321 2
Q ss_pred cccccCCCceeeeecCCCccccccCCCCCChhHHhhcCCcceEeeeccccccHHHHHHHHHhHhcCCCCceEEEEeceEE
Q 002136 501 VEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIR 580 (961)
Q Consensus 501 ~~~~~~~dvldtWf~S~l~~~~~~~~p~~~~~~~~~~~P~d~~~~G~Dil~fw~~~~i~~~~~l~~~~Pfk~v~~hg~v~ 580 (961)
..++|++|||||||||++||++++|||.++ .+|++|||+|++++|+||+|||++||+++|+.++|+.||++|++||+|+
T Consensus 501 ~~~~~~~DVlDtWFdS~l~p~~~~g~p~~~-~~~~~~~P~d~~~~G~Dii~~W~arm~~~~~~~~~~~Pfk~v~~HG~v~ 579 (995)
T PTZ00419 501 FELEQDEDVLDTWFSSGLFPFSTLGWPDQT-DDLQRFFPTSLLETGSDILFFWVARMVMMSLHLTDKLPFKTVFLHAMVR 579 (995)
T ss_pred CCeEECCceEEEEEeCCHHHHHHhCCCCCh-HHHhhcCCCcEEEechhHHhHHHHHHHHHHHHhcCCCChHHHhccceEE
Confidence 468999999999999999999999999876 7799999999999999999999999999999999999999999999999
Q ss_pred cCCCccccccCCCccCchhhhh-------------------------------------hcChhHHHHHHHhCCC-CCcc
Q 002136 581 DSQGRKMSKTLGNVIDPIDTIK-------------------------------------EFGADALRFTISLGTA-GQDL 622 (961)
Q Consensus 581 d~~G~KMSKS~GNvI~p~dii~-------------------------------------~yGaDalR~~L~~~~~-~~D~ 622 (961)
|.+|+|||||+||||||.++|+ +||||++||||++.+. ++|+
T Consensus 580 d~~G~KMSKSlGNvIdP~~ii~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~f~~gi~~yGaDalR~~l~~~~~~~~Di 659 (995)
T PTZ00419 580 DSQGEKMSKSKGNVIDPLEVIEGISLQDLNQKLYEGNLPEKEIKRAIELQKKEFPNGIPECGTDALRFGLLAYTQQGRNI 659 (995)
T ss_pred CCCCCCcccCCCCcCChHHHhcccchhhHHHhhhccccchhhhhhHhhhhhccCCCCCcccCcHHHHHHHHhcCCCCCCc
Confidence 9999999999999999999999 8999999999999887 9999
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhhhcCC
Q 002136 623 SLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYF 702 (961)
Q Consensus 623 ~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~ 702 (961)
+|+.+.+.++++|+||+||+++|+++++.+...... ...........+...|+||+++++.+++.++++|++|+
T Consensus 660 ~~~~~~v~~~~~f~nklwN~~rf~~~~~~~~~~~~~------~~~~~~~~~~~~~~~D~wIls~L~~~i~~v~~~~e~y~ 733 (995)
T PTZ00419 660 NLDINRVVGYRHFCNKLWNAVKFALMKLLKDFNLPN------STLFKPNNVESLPWEDKWILHRLNVAIKEVTEGFKEYD 733 (995)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhcccccccccc------cccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 999999999999999999999999987754321000 00000000123456799999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhcC---CCCce
Q 002136 703 FGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRK---RKEAL 779 (961)
Q Consensus 703 f~~A~~~i~~f~~~~~~n~Yle~~K~~l~~~~~~~~~~~~~~~l~~vl~~~l~LL~Pf~P~itEeiw~~L~~---~~~si 779 (961)
|+.|++++++|+|+++|||||+.+|+|++...+...+++++.+++++++.+++||||||||+|||||+.|+. ..+||
T Consensus 734 f~~A~~~i~~F~~~~~~n~Yie~~K~~l~~~~~~~~~~~~~~~L~~vL~~~l~LL~PfmPfitEElw~~L~~~~~~~~si 813 (995)
T PTZ00419 734 FSEATQATYNFWLYELCDVYLELIKPRLSKQSDGERKQHAQDVLHTVLDIGLRLLHPMMPFITEELYQRLPNYLRKSESI 813 (995)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhccCCCCCee
Confidence 999999999999999999999999999843334445677899999999999999999999999999999974 24699
Q ss_pred eecCCCCCCC-CCChHHHHHHHHHHHHHHHHHhhhhhcccCCCceeeEEEE-cCHHHHHHHHhHHHHHHHHcCCccccEE
Q 002136 780 IVSPWPQTSL-PRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISASIV-ANEEVIQYISKEKEVLALLSRLDLLNVH 857 (961)
Q Consensus 780 ~~~~wP~~~~-~~d~~~~~~~~~~~~~v~~ir~~r~~~~i~~~~~~~~~i~-~~~~~~~~~~~~~~~i~~l~~~~~~~v~ 857 (961)
+.++||+++. +.|+++++.|+.++++++++|++|+++++++++++.+.+. .+++..+.++....+|..|+++.. +.
T Consensus 814 ~~~~~P~~~~~~~d~~~e~~~~~~~~ii~~iR~~r~~~~i~~~~~l~~~i~~~~~~~~~~~~~~~~~i~~l~~~~~--v~ 891 (995)
T PTZ00419 814 SIAKYPQPNPGWNNEALDEEMKIIMSIVKSIRSLIATLGIPNKTKPDCYVTAKDAELIELIESAENLISTLAKIGS--VS 891 (995)
T ss_pred eccCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEeCCHHHHHHHHHHHHHHHHhcCCCe--eE
Confidence 9999999874 7789999999999999999999999999999999998776 556667788888999999998864 44
Q ss_pred ee---cCCCCCCCCcEEEEecCCeEEEecCCCccChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHH
Q 002136 858 FT---ESPPGDANQSVHLVASEGLEAYLPLADMVDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQE 934 (961)
Q Consensus 858 ~~---~~~~~~~~~~v~~~v~~~~~~~~~l~~~id~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~ 934 (961)
+. ......+.+++..++..++++++++.|.||+++|++||+|+++++++++++++++|+||+|++|||++||+++|+
T Consensus 892 ~~~~~~~~~~~~~~~~~~~v~~~~~~~l~l~~~id~~~E~~rL~K~l~kl~~ei~~~~~kL~N~~F~~kAp~~vve~e~~ 971 (995)
T PTZ00419 892 VIPPIEEEAEVPKGCGFDVVDNKVIIYLNLDEFIDLKKELAKLEKKLAKLQKSLESYLKKISIPNYEDKVPEDVRKLNDE 971 (995)
T ss_pred EeccccccccCcccceeeEecCceEEEEECCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHH
Confidence 43 111112455665456678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 002136 935 KAAEAEEKINLTKNRLAFLRSTV 957 (961)
Q Consensus 935 kl~~~~~~l~~~~~~l~~l~~~~ 957 (961)
|+++++++++.|++.|++|++|+
T Consensus 972 kl~~~~~~l~~l~~~l~~l~~~~ 994 (995)
T PTZ00419 972 KIDELNEEIKQLEQAIEELKSLL 994 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999875
No 6
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4.7e-196 Score=1808.58 Aligned_cols=866 Identities=53% Similarity=0.946 Sum_probs=801.5
Q ss_pred CCCCCCCCh-hhHHHHHHHHHhCCCCCCCCCCCCCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCC
Q 002136 57 DTLPKTFDF-TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (961)
Q Consensus 57 ~~~~~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G 135 (961)
+++++.||| .+|++||++|+++++|+++.+ .+++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+||
T Consensus 3 ~~~~~~y~~~~~E~~~~~~W~~~~~f~~~~~-~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G 81 (874)
T PRK05729 3 MELPKTYDPKEVEAKWYQKWEEKGYFKPDDN-SKKPFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPG 81 (874)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHCCCcccCcC-CCCCEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCC
Confidence 468999999 899999999999999998765 356699999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHH
Q 002136 136 TDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIR 215 (961)
Q Consensus 136 ~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~ 215 (961)
|||||||||.+||+.+.++|++++++||++|+++||+|++++++.|++||++||+|+||+|+|+|||++|.++|+++|.+
T Consensus 82 ~D~~Gi~~e~~ve~~l~~~g~~~~~~~re~f~~~~~~w~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~ 161 (874)
T PRK05729 82 TDHAGIATQMVVERQLAAEGKSRHDLGREKFLEKVWEWKEESGGTITNQLRRLGASCDWSRERFTMDEGLSKAVREVFVR 161 (874)
T ss_pred CCccchhhHHHHHHHHHhcCCChHHCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999998889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCceEEcCeeeecCCCCCccccccccccccCCCeEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCchhhhh
Q 002136 216 LHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQF 295 (961)
Q Consensus 216 L~~~GlIy~~~~~v~w~p~~~t~lsd~Ev~~~e~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~y~~l 295 (961)
||++|||||+.++|+|||.|+|+|||+||+|++..|.++||+|++.+++.+|+|||||||||+||+||||||+|+||++|
T Consensus 162 L~~~GlIyr~~~~v~wcp~~~talsd~EV~~~~~~~~~~~i~f~~~~~~~~l~vaTtrPeTl~~~~avaV~P~d~ry~~l 241 (874)
T PRK05729 162 LYEKGLIYRGKRLVNWDPKLQTALSDLEVEYKEVKGKLWHIRYPLADGSDYLVVATTRPETMLGDTAVAVNPEDERYKHL 241 (874)
T ss_pred HHHCCCEeecCcccccCCCCCCcchhhhcccccccceEEEEEEEecCCCcEEEEEeCCcchhhcCeeEeECCCccHHHHh
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred ccCeeeccCCCCCeeeeeecCccccCCCcceeEeCCCCChhHHHHHHHhCCCceeecCCCCcccccccccCCCchHHHHH
Q 002136 296 IGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARK 375 (961)
Q Consensus 296 ~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~v~~~Pah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~ar~ 375 (961)
+|+++++|+ .++.+|||+|+||++++|||+||+|||||++||++|++||||+++++|++|+|++++|.|+||+|++||+
T Consensus 242 ~g~~~~~P~-~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~ar~ 320 (874)
T PRK05729 242 IGKTVILPL-VGREIPIIADEYVDPEFGTGAVKITPAHDPNDFEVGKRHNLPMINIMDEDGTINENPGEYQGLDRFEARK 320 (874)
T ss_pred cCCEEECCC-CCCeeeEecCccCCCCCCCcceEecCCCCHHHHHHHHHcCCCcccccCCCCeEcCCCcccCCCCHHHHHH
Confidence 999999999 5899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCccccccccccCCcccCCCCceeeeeccceeeeccHHHHHHHHHHHcCCceeechhHHHHHHHHHhcCCC
Q 002136 376 KLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKD 455 (961)
Q Consensus 376 ~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~~l~D 455 (961)
+|++.|++.|++.+.+++.|++|+|||||++||+++++||||+|+++++++++++++++++|+|+++++++.+||++++|
T Consensus 321 ~i~~~L~~~g~l~~~~~~~~~~p~~~R~~~~i~~~~~~QWFi~~~~~~~~~~~~v~~~~i~~~P~~~~~~~~~wl~~l~D 400 (874)
T PRK05729 321 AIVADLEELGLLVKIEPHTHSVGHSDRSGVVIEPYLSDQWFVKMKPLAKPALEAVENGEIKFVPERWEKTYFHWMENIQD 400 (874)
T ss_pred HHHHHHHhCCCeeeeEEeeccCCeeCCCCceEEEEecCcceEehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred ceeeeccCCCcccceEEEcCCcccEEEecChHHHHHHHHhhcCCCcccccCCCceeeeecCCCccccccCCCCCChhHHh
Q 002136 456 WCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFK 535 (961)
Q Consensus 456 W~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvldtWf~S~l~~~~~~~~p~~~~~~~~ 535 (961)
||||||+|||||||+|+|.+ +.+++..+..+. + ....++|++|||||||||++||++++|||.+. .+|+
T Consensus 401 WcISRq~~WG~pIP~~~~~~--~~~~v~~~~~~~-------~-~~~~~~~~~DvlDtWfsS~l~~~~~lgwp~~~-~~~~ 469 (874)
T PRK05729 401 WCISRQLWWGHRIPAWYDED--GEVYVGREEPEA-------R-EKALLTQDEDVLDTWFSSALWPFSTLGWPEKT-EDLK 469 (874)
T ss_pred ceeeeecccCCcccEEEeCC--CcEEeCCccccc-------c-cccCeEeCCceecceecCCccHHHHhCCCCCc-HHHH
Confidence 99999999999999999963 345554443211 1 11248899999999999999999999999865 7899
Q ss_pred hcCCcceEeeeccccccHHHHHHHHHhHhcCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHh
Q 002136 536 KFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISL 615 (961)
Q Consensus 536 ~~~P~d~~~~G~Dil~fw~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~ 615 (961)
+|||+|++++|+||+|||+++|+++++.++|++||++|++||+|+|.+|+|||||+||||+|.++|++||+|++||||++
T Consensus 470 ~~~P~d~~~~G~Dii~~W~a~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~KMSKSlGNvIdP~dvi~~yGaDalR~~ll~ 549 (874)
T PRK05729 470 RFYPTSVLVTGFDIIFFWVARMIMMGLHFTGQVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDLIDKYGADALRFTLAA 549 (874)
T ss_pred hcCCcccccccccccchHHHHHHHHHHHhcCCCchhheEEeeeEECCCCCCcccCCCCCCCHHHHHHHhChHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-CCccccCHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHH
Q 002136 616 GTA-GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTV 694 (961)
Q Consensus 616 ~~~-~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v 694 (961)
.++ ++|++|+++.+.+.++|+|||||++||+.+++.+..... ......++..|+||+++++.+++.+
T Consensus 550 ~~~~~~Di~fs~~~l~~~~~~~nkl~N~~Rf~~~~~~~~~~~~------------~~~~~~~~~~D~wil~~l~~~~~~v 617 (874)
T PRK05729 550 LASPGRDIRFDEERVEGYRNFANKLWNASRFVLMNLEGADVGE------------LPDPEELSLADRWILSRLNRTVAEV 617 (874)
T ss_pred CCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHHHhcccCCccc------------ccccccCCHHHHHHHHHHHHHHHHH
Confidence 877 999999999999999999999999999987754332100 0011234678999999999999999
Q ss_pred HHhhhcCChHHHHHHHHHHHHHhhhHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhcC
Q 002136 695 TASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRK 774 (961)
Q Consensus 695 ~~a~e~~~f~~A~~~i~~f~~~~~~n~Yle~~K~~l~~~~~~~~~~~~~~~l~~vl~~~l~LL~Pf~P~itEeiw~~L~~ 774 (961)
+++|++|+|+.|++.+++|+|+++|||||+.+|+|++ + + .+++++.+++.+++.+++||||||||+|||||+.|+.
T Consensus 618 ~~~~e~y~f~~a~~~l~~f~~~~~~~~Yle~~k~~l~-~-~--~~~~~~~~l~~~l~~~~~lL~Pf~PfitEelw~~l~~ 693 (874)
T PRK05729 618 TEALDKYRFDEAARALYEFIWNEFCDWYLELAKPVLQ-E-A--AKRATRATLAYVLEQILRLLHPFMPFITEELWQKLAP 693 (874)
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h-h--HHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHhccc
Confidence 9999999999999999999999999999999999987 2 2 2667889999999999999999999999999999985
Q ss_pred C--CCceeecCCCCCCC-CCChHHHHHHHHHHHHHHHHHhhhhhcccCCCceeeEEEE-cCHHHHHHHHhHHHHHHHHcC
Q 002136 775 R--KEALIVSPWPQTSL-PRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISASIV-ANEEVIQYISKEKEVLALLSR 850 (961)
Q Consensus 775 ~--~~si~~~~wP~~~~-~~d~~~~~~~~~~~~~v~~ir~~r~~~~i~~~~~~~~~i~-~~~~~~~~~~~~~~~i~~l~~ 850 (961)
. .+||+.++||+.+. + |+++++.|+.++++++++|++|++++|++++++.+++. .+.+....++.+.+.|+.|++
T Consensus 694 ~~~~~si~~~~~P~~~~~~-~~~~~~~~~~~~~ii~~ir~~r~~~~i~~~~~~~~~i~~~~~~~~~~l~~~~~~i~~l~~ 772 (874)
T PRK05729 694 LGIEESIMLAPWPEADEAI-DEAAEAEFEWLKELITAIRNIRAEMNIPPSKKLPLLLKGADAEDRARLEANEAYIKRLAR 772 (874)
T ss_pred CCCCCceeecCCCCCCccc-CHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeEEEEeCCHHHHHHHHHHHHHHHHHhC
Confidence 4 24899999999874 5 88899999999999999999999999999999998876 556666778888899999988
Q ss_pred CccccEEeecCCCCCCCCcEEEEecCCeEEEecCCCccChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHH
Q 002136 851 LDLLNVHFTESPPGDANQSVHLVASEGLEAYLPLADMVDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVR 930 (961)
Q Consensus 851 ~~~~~v~~~~~~~~~~~~~v~~~v~~~~~~~~~l~~~id~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~ 930 (961)
++. +.++....+.|++++. ++.+++++|+++.|.||+++|++||+|++++++++++++++||+|++|++|||++||+
T Consensus 773 ~~~--v~~~~~~~~~~~~~~~-~v~~~~~i~l~l~~~id~~~e~~rL~K~l~kl~~ei~~~~~kL~n~~F~~KAP~~vve 849 (874)
T PRK05729 773 LES--LEILADDEEAPEGAAS-AVVGGAELFLPLEGLIDVEAELARLEKELAKLEKEIERVEKKLSNEGFVAKAPEEVVE 849 (874)
T ss_pred cCc--eEEecCCCcCCcCceE-EEecCeEEEEECCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHH
Confidence 864 4553322224567777 4567899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 931 GVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 931 ~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
++++|+++++++++.+++.|+.|++
T Consensus 850 ~e~~kl~~~~~~~~~l~~~l~~l~~ 874 (874)
T PRK05729 850 KEREKLAEYEEKLAKLKERLARLKA 874 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999998863
No 7
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=100.00 E-value=3e-190 Score=1758.79 Aligned_cols=856 Identities=50% Similarity=0.904 Sum_probs=792.7
Q ss_pred CCCCCCh-hhHHHHHHHHHhCCCCCCCCCCCCCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCC
Q 002136 59 LPKTFDF-TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTD 137 (961)
Q Consensus 59 ~~~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D 137 (961)
||+.||| ++|++||++|+++++|+++.+.++++|+|++|||||||.||||||++++++|+++||+||+|++|+|++|||
T Consensus 1 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D 80 (861)
T TIGR00422 1 MPKDYDPHEVEKKWYKKWEKSGFFKPDGNSNKPPFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTD 80 (861)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcccCcccCCCeEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcC
Confidence 5789999 899999999999999999876667889999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHH
Q 002136 138 HAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLH 217 (961)
Q Consensus 138 ~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~ 217 (961)
|||+|||.+||+.+...|++++++||++|+++||+|++++++.|++||++||+|+||+|+|+|||+.|.++|+|+|.+||
T Consensus 81 ~~Glp~e~~vek~~~~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~ 160 (861)
T TIGR00422 81 HAGIATQVKVEKKLGAEGKTKHDLGREEFREKIWEWKEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVRLY 160 (861)
T ss_pred cCCCcHHHHHHHHhcccCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHHHHHHHHH
Confidence 99999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCceEEcCeeeecCCCCCccccccccccccCCCeEEEEEEEecCCC-eeEEEEecCCCccCCCcEEEECCCCchhhhhc
Q 002136 218 EKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRS-DFLTIATTRPETLFGDVALAVNPQDEHYSQFI 296 (961)
Q Consensus 218 ~~GlIy~~~~~v~w~p~~~t~lsd~Ev~~~e~~~~~~~~~~~~~~~~-~~l~v~TtrPeTl~g~~av~v~P~~~~y~~l~ 296 (961)
++||||++.++|+|||.|+|+|||+||+|++..|.++||+|++.+++ .+|+|||||||||+||+||||||+|+||++|+
T Consensus 161 ~~GlIy~~~~~v~wcp~~~t~lsd~Ev~~~~~~~~~~~i~f~~~~~~~~~l~vaTtrPeTl~~~~av~V~P~~~ry~~l~ 240 (861)
T TIGR00422 161 EKGLIYRGEYLVNWDPKLNTAISDIEVEYKEVKGKLYYIRYPLANGSKDYLVVATTRPETMFGDTAVAVHPEDERYKHLI 240 (861)
T ss_pred HCCCeeecCcccccCCCCCCcchHhHhhcccccceEEEEEEEecCCCCCEEEEEeCCcchhhhCeEEEECCCchHHHHhc
Confidence 99999999999999999999999999999999999999999998766 89999999999999999999999999999999
Q ss_pred cCeeeccCCCCCeeeeeecCccccCCCcceeEeCCCCChhHHHHHHHhCCCceeecCCCCcccccccccCCCchHHHHHH
Q 002136 297 GMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKK 376 (961)
Q Consensus 297 g~~~~~P~~~~~~ipii~~~~V~~~~GTG~v~~~Pah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~ar~~ 376 (961)
|+++.+|++ ++.+|||+|+||++++|||+||+|||||++||+++++||||+++++|++|+++++||.|+||+++|||++
T Consensus 241 g~~~~~P~~-~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~~~~ar~~ 319 (861)
T TIGR00422 241 GKKVILPLT-GRKIPIIADEYVDMEFGTGAVKVTPAHDFNDYEWGKRHNLEFINILDEDGLLNENAGKYQGLTRFEARKK 319 (861)
T ss_pred CCEEEcCCC-CCcceeeecCCCCcccCCCceEecCCCChHHHHHHHHcCCCccceeCCCCeEcCCCcccCCcCHHHhHHH
Confidence 999999995 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCccccccccccCCcccCCCCceeeeeccceeeeccHHHHHHHHHHHcCCceeechhHHHHHHHHHhcCCCc
Q 002136 377 LWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDW 456 (961)
Q Consensus 377 i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~~l~DW 456 (961)
|+++|+++|++.+.+++.|++|+|+|||++||+++++||||+++++++++++++++++++|+|+++++++.+||++++||
T Consensus 320 i~~~L~~~g~l~~~~~~~~~~p~~~R~g~~ve~~~~~qWFi~~~~~~~~~~~~~~~~~i~~~P~~~~~~~~~wl~~l~DW 399 (861)
T TIGR00422 320 IVEDLKEEGLLVKIEPHTHNVGTCWRSGTVVEPLLSKQWFVKVEKLADKALEAAEEGEIKFVPKRMEKRYLNWLRNIKDW 399 (861)
T ss_pred HHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEecCcceEecHHHHHHHHHHhhcCCeEEEChHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred eeeeccCCCcccceEEEcCCcccEEEecChHHHHHHHHhhcCCCcccccCCCceeeeecCCCccccccCCCCCChhHHhh
Q 002136 457 CISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKK 536 (961)
Q Consensus 457 ~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvldtWf~S~l~~~~~~~~p~~~~~~~~~ 536 (961)
|||||||||||||+|+|.. ++.+.++.+..++...+ ++|.+..+.|++|||||||||++||++++|||.++ ++|++
T Consensus 400 ~ISRq~~WG~piP~w~~~~-~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~dVlDtWFdS~l~~~s~~g~p~~~-~~~~~ 475 (861)
T TIGR00422 400 CISRQLIWGHRIPVWYCKE-CGEVYVAKEEPLPDDKT--NTGPSVELEQDTDVLDTWFSSSLWPFSTLGWPDET-KDLKK 475 (861)
T ss_pred eeeeecccCCcceEEEECC-CCcEEeccchHHhhhhh--ccCCcccEEECCCcccceeccchHHHHHhCCCCCh-HHHhh
Confidence 9999999999999999964 55667776666554433 24544579999999999999999999999999876 78999
Q ss_pred cCCcceEeeeccccccHHHHHHHHHhHhcCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHhC
Q 002136 537 FYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLG 616 (961)
Q Consensus 537 ~~P~d~~~~G~Dil~fw~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~ 616 (961)
|||+|++++|+||+|||+++|++++++++++.||++|++||+|+|.+|+|||||+||+|+|.++|++||+|++||||++.
T Consensus 476 ~~P~d~~~~G~Dii~fw~~~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~KMSKS~GN~i~p~~~i~~ygaDalR~~l~~~ 555 (861)
T TIGR00422 476 FYPTDLLVTGYDIIFFWVARMIFRSLALTGQVPFKEVYIHGLVRDEQGRKMSKSLGNVIDPLDVIEKYGADALRFTLASL 555 (861)
T ss_pred cCCcceeecchhhhhHHHHHHHHHHHHhcCCCchheEEEeeEEECCCCCCCCcCCCCCCCHHHHHHHhChHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC-CCccccCHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHH
Q 002136 617 TA-GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVT 695 (961)
Q Consensus 617 ~~-~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~ 695 (961)
++ ++|++|+++.+.++++|+|+|||+.||+..++...... ......++..|+||+++++.+++.++
T Consensus 556 ~~~~~d~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~-------------~~~~~~~~~~D~wil~~l~~~~~~v~ 622 (861)
T TIGR00422 556 VTPGDDINFDWKRVESARNFLNKLWNASRFVLMNLSDDLEL-------------SGGEEKLSLADRWILSKLNRTIKEVR 622 (861)
T ss_pred CCCCCCceecHHHHHHHHHHHHHHHHHHHHHHhcccccccc-------------ccccccCCHHHHHHHHHHHHHHHHHH
Confidence 88 99999999999999999999999999998765432110 00012245689999999999999999
Q ss_pred HhhhcCChHHHHHHHHHHHHHhhhHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhcCC
Q 002136 696 ASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR 775 (961)
Q Consensus 696 ~a~e~~~f~~A~~~i~~f~~~~~~n~Yle~~K~~l~~~~~~~~~~~~~~~l~~vl~~~l~LL~Pf~P~itEeiw~~L~~~ 775 (961)
++|++|+|+.|++.+++|+|+++|||||+.+|+|++++ +...+.+++.+++++++.+++||||||||+||+||+.|+..
T Consensus 623 ~~~e~~~f~~A~~~l~~f~~~~~~n~Yie~~k~~~~~~-~~~~~~~~~~~l~~~l~~~~~lL~Pf~P~itEelw~~L~~~ 701 (861)
T TIGR00422 623 KALDKYRFAEAAKALYEFIWNDFCDWYIELVKYRLYNG-NEAEKKAARDTLYYVLDKALRLLHPFMPFITEEIWQHFKEG 701 (861)
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHHHHHHHhHHHHcCC-CcHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhCccc
Confidence 99999999999999999998999999999999999765 34456788999999999999999999999999999999866
Q ss_pred CCceeecCCCCCCC-CCChHHHHHHHHHHHHHHHHHhhhhhcccCCCceeeEEEE-cCHHHHHHHHhHHHHHHHHcCCcc
Q 002136 776 KEALIVSPWPQTSL-PRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISASIV-ANEEVIQYISKEKEVLALLSRLDL 853 (961)
Q Consensus 776 ~~si~~~~wP~~~~-~~d~~~~~~~~~~~~~v~~ir~~r~~~~i~~~~~~~~~i~-~~~~~~~~~~~~~~~i~~l~~~~~ 853 (961)
.+||++++||+++. +.|+++++.|+.++++++.+|++|+++++++++++.+.++ .+.+..+.++...+.|+.|++++.
T Consensus 702 ~~si~~~~~P~~~~~~~d~~~e~~~~~l~~ii~~iR~~r~~~~i~~~~~l~~~i~~~~~~~~~~l~~~~~~I~~l~~v~~ 781 (861)
T TIGR00422 702 ADSIMLQSYPVVDAEFVDEEAEKAFELLKEIIVSIRNLKAESNIPPNAPLKVLLIYTEAETAERLKLNAVDIKGAINFSE 781 (861)
T ss_pred CCceeecCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEEeCCHHHHHHHHHHHHHHhhhcCCCc
Confidence 57999999999885 7789999999999999999999999999999999998876 455556778888899999988864
Q ss_pred ccEEeecCCCCCCCCcEEEEecCCeEEEecCCCccChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHH
Q 002136 854 LNVHFTESPPGDANQSVHLVASEGLEAYLPLADMVDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQ 933 (961)
Q Consensus 854 ~~v~~~~~~~~~~~~~v~~~v~~~~~~~~~l~~~id~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~ 933 (961)
|.++...+ ...+....+..++++++++.|++|.++|++||+|++++++++++++++||+|++|++|||++||++++
T Consensus 782 --v~~~~~~~--~~~~~~~~v~~~~~~~~~l~~~~d~~~e~~~l~k~l~~~~~~i~~~~~kl~n~~f~~kAp~~vv~~e~ 857 (861)
T TIGR00422 782 --VEVVIEKP--EVTEAVVELVPGFEIIIPVKGLINKAKELARLQKQLDKEKKEVIRIEGKLENEGFVKKAPKEVIEKEK 857 (861)
T ss_pred --eEeeccCC--ccccceEEEccCcEEEEEhHhhcCHHHHHHHHHHHHHHHHHHHHHHHhhhcCchhhhcCCHHHHHHHH
Confidence 44443222 12233335667899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 002136 934 EKAA 937 (961)
Q Consensus 934 ~kl~ 937 (961)
+||+
T Consensus 858 ~kl~ 861 (861)
T TIGR00422 858 EKLE 861 (861)
T ss_pred hhcC
Confidence 9974
No 8
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.5e-189 Score=1755.99 Aligned_cols=877 Identities=43% Similarity=0.806 Sum_probs=799.5
Q ss_pred CCCCCCCCCh-hhHHHHHHHHHhCCCCCCCC-CCCCCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeec
Q 002136 56 KDTLPKTFDF-TSEERIYNWWESQGYFKPNF-ERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWL 133 (961)
Q Consensus 56 ~~~~~~~~~~-~~E~~~~~~W~~~~~f~~~~-~~~~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~ 133 (961)
..++++.||| .+|++||++|+++++|++.. +.++++|+|++||||+||.|||||++|++++|+++||+||+||+|+|+
T Consensus 12 ~~~~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~ 91 (1052)
T PRK14900 12 RTELAKGYEHREVEARWYPFWQERGYFHGDEHDRTRPPFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWL 91 (1052)
T ss_pred ccccCCCCCHHHHHHHHHHHHHHCCCccCCcccCCCCCEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCC
Confidence 4578999999 89999999999999999864 345788999999999999999999999999999999999999999999
Q ss_pred CCCCCCCchHHHHHHHHHH-HcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHH
Q 002136 134 PGTDHAGIATQLVVEKMLA-AEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEA 212 (961)
Q Consensus 134 ~G~D~~Gl~~q~~vek~l~-~~g~~~~~~~~~~f~~~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~ 212 (961)
+||||||||||.++|+.+. ..|+++.+++|++|++.||+|++++++.|++||++||+|+||+|+|+|+||+|+++|+|+
T Consensus 92 ~G~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~ 171 (1052)
T PRK14900 92 PGTDHAGIATQMIVEKELKKTEKKSRHDLGREAFLERVWAWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREV 171 (1052)
T ss_pred CCCCccchHHHHHHHHHhhhccCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHHHH
Confidence 9999999999999999874 468899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCceEEcCeeeecCCCCCcccccccccccc-CCCeEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCch
Q 002136 213 FIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE-EPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEH 291 (961)
Q Consensus 213 F~~L~~~GlIy~~~~~v~w~p~~~t~lsd~Ev~~~e-~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~ 291 (961)
|.+||++|||||+.++|+|||.|+|+|||+||+|++ ..+.++||+|++.+++.+|+|||||||||+||+||||||+|+|
T Consensus 172 F~~L~~~Gliyr~~~~v~wcp~~~T~Lsd~Ev~~~e~~~~~~~~i~f~l~~~~~~l~vaTTrPeTl~~~~avaV~P~~~~ 251 (1052)
T PRK14900 172 FVRLHEEGLIYREKKLINWCPDCRTALSDLEVEHEEAHQGELWSFAYPLADGSGEIVVATTRPETMLGDTAVAVHPLDPR 251 (1052)
T ss_pred HHHHHHCCCEEeccceeccCCCCCCCccHHHhcccCCCCCeEEEEEEEecCCCcEEEEEECchhhhhcceeEEECCCcHH
Confidence 999999999999999999999999999999999998 8899999999998877899999999999999999999999999
Q ss_pred hhhhccCeeeccCCCCCeeeeeecC-ccccCCCcceeEeCCCCChhHHHHHHHhCCCceeecCCCCcccccccccCCCch
Q 002136 292 YSQFIGMMAIVPMTYGRHVPIISDK-YVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDR 370 (961)
Q Consensus 292 y~~l~g~~~~~P~~~~~~ipii~~~-~V~~~~GTG~v~~~Pah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~ 370 (961)
|++|+|++|.||+ .++.+|||++. ||++++|||+||+|||||++||++|++||||+++++|++|+|++++|.|.|+++
T Consensus 252 y~~L~G~~~~~Pl-~~~~ipIi~d~~~vd~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~~~Gl~~ 330 (1052)
T PRK14900 252 YMALHGKKVRHPI-TGRTFPIVADAILVDPKFGTGAVKVTPAHDFNDFEVGKRHGLEMITVIGPDGRMTAEAGPLAGLDR 330 (1052)
T ss_pred HHHhcCCEEECCC-CCCeeEEEecccccCcCCCCCeEEecCCCChhHHHHHHHcCCCccceECCCcEEecCCcccCCcCH
Confidence 9999999999999 58999999774 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCccccccccccCCcccCCCCceeeeeccceeeeccHHHHHHHHHHHcCCceeechhHHHHHHHHH
Q 002136 371 FEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWL 450 (961)
Q Consensus 371 ~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl 450 (961)
++||++|++.|++.|++++.++|.|++|+|||||+|||+++++||||+++++++++++++++++++|+|+++++++.+||
T Consensus 331 ~ear~~Ii~~L~~~g~l~~~~~~~h~~~~c~R~~~~ie~~~s~qWFi~l~~~k~~~~~~v~~~~~~~~P~~~~~~~~~wl 410 (1052)
T PRK14900 331 FEARKEVKRLLAEQGLDRGAKPHVLPLGRCQRSATILEPLLSDQWYVRIEPLARPAIEAVEQGRTRFIPEQWTNTYMAWM 410 (1052)
T ss_pred HHHHHHHHHHHHhCCCeecceeeeccCceeCCCCceEEEEeccceeeehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred hcCCCceeeeccCCCcccceEEEcCCcccEEEecChHHHHHHHHhhcCCCcccccCCCceeeeecCCCccccccCCCCCC
Q 002136 451 SNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVS 530 (961)
Q Consensus 451 ~~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvldtWf~S~l~~~~~~~~p~~~ 530 (961)
++++|||||||||||||||+|+|+ ++.++++......+ ..|+ +..++|++|||||||||++||++++|||.+.
T Consensus 411 ~~l~DW~ISRqr~WG~PIP~w~~~--~~~~~v~~~~~~~~----~~~~-~~~~~~~~dVlDvWFdS~l~y~s~~g~p~~~ 483 (1052)
T PRK14900 411 RNIHDWCISRQLWWGHQIPAWYCP--DGHVTVARETPEAC----STCG-KAELRQDEDVLDTWFSSGLWPFSTMGWPEQT 483 (1052)
T ss_pred hcCccceEEeecCCCceeCeEEcC--CCcEEecccccccc----cccC-ccceecCCceEEEEEcCChHHHHHHcCCCch
Confidence 999999999999999999999995 34566665432211 1233 3358899999999999999999999999875
Q ss_pred hhHHhhcCCcceEeeeccccccHHHHHHHHHhHhcCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHH
Q 002136 531 ADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALR 610 (961)
Q Consensus 531 ~~~~~~~~P~d~~~~G~Dil~fw~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR 610 (961)
++|++|||+|++++|+||++||+++|+++++.++|.+||++|++||||+|.+|+|||||+||||+|.++|++||+|++|
T Consensus 484 -~~~~~~~P~d~~~~G~Dii~~W~a~~l~~~~~~~~~~Pfk~V~~hG~v~d~~G~KMSKSkGNvIdP~dvIe~yGaDalR 562 (1052)
T PRK14900 484 -DTLRTFYPTSVMETGHDIIFFWVARMMMMGLHFMGEVPFRTVYLHPMVRDEKGQKMSKTKGNVIDPLVITEQYGADALR 562 (1052)
T ss_pred -HHHHhhCCchhhcccccHHhHHHHHHHHHHHHhcCCCccceeEecccEECCCCCCccCCCCCCCCHHHHHHHhCcHHHH
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCC-CCccccCHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHH
Q 002136 611 FTISLGTA-GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHM 689 (961)
Q Consensus 611 ~~L~~~~~-~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~ 689 (961)
|||++.++ ++|++|+++.+...++|+|+|||+.||++.++.++..... ......++..|+||+++++.
T Consensus 563 ~~L~~~~~~g~D~~fs~~~l~~~~~f~nkl~N~~R~~~~~~~~~~~~~~-----------~~~~~~~~~~D~wils~l~~ 631 (1052)
T PRK14900 563 FTLAALTAQGRDIKLAKERIEGYRAFANKLWNASRFALMNLSGYQERGE-----------DPARLARTPADRWILARLQR 631 (1052)
T ss_pred HHHHhcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccc-----------cccccccCHHHHHHHHHHHH
Confidence 99999877 9999999999999999999999999999876654321000 00012345689999999999
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhhHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHH
Q 002136 690 LIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELW 769 (961)
Q Consensus 690 ~~~~v~~a~e~~~f~~A~~~i~~f~~~~~~n~Yle~~K~~l~~~~~~~~~~~~~~~l~~vl~~~l~LL~Pf~P~itEeiw 769 (961)
++.+++++|++|+|+.|++.+++|+|+++|||||+..|++++++ +...+..++.+++.+|+.+++||||||||+||+||
T Consensus 632 ~i~~v~~~~e~y~f~~A~~~i~~f~~~~~~n~Yie~~k~~l~~~-~~~~~~~~~~~L~~~L~~l~~LLaPfmP~~aEeiw 710 (1052)
T PRK14900 632 AVNETVEALEAFRFNDAANAVYAFVWHELCDWYIELAKEALASE-DPEARRSVQAVLVHCLQTSYRLLHPFMPFITEELW 710 (1052)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhhHHHHHhccHhhccC-CHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 99999999999999999999999999999999999999998865 44455678889999999999999999999999999
Q ss_pred HHhcCC------CCceeecCCCCCCCCCChHHHHHHHHHHHHHHHHHhhhhhcccCCCcee----eEEEE-cCHHHHHHH
Q 002136 770 QSLRKR------KEALIVSPWPQTSLPRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRI----SASIV-ANEEVIQYI 838 (961)
Q Consensus 770 ~~L~~~------~~si~~~~wP~~~~~~d~~~~~~~~~~~~~v~~ir~~r~~~~i~~~~~~----~~~i~-~~~~~~~~~ 838 (961)
+.|+.. .+||++++||+++. .|++++..|+.++++++.||++|++++|+++.++ .+++. .+++....+
T Consensus 711 ~~L~~~~~~~~~~~SV~~~~wP~~~~-~d~~~e~~~~~v~~ii~~iR~~R~~~~i~~~~~l~~~~~~~v~~~~~~~~~~l 789 (1052)
T PRK14900 711 HVLRAQVGASAWADSVLAAEYPRKGE-ADEAAEAAFRPVLGIIDAVRNIRGEMGIPWKVKLGAQAPVEIAVADPALRDLL 789 (1052)
T ss_pred HHhccccccCCCCCceeecCCCCCCc-ccHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccCCCCeEEEEcCCHHHHHHH
Confidence 999742 26899999999876 6788999999999999999999999999999988 56665 556666778
Q ss_pred Hh-HHHHHHHHcCCccccEEeecCCCCCCCCcEEEEecCCeEEEecCCCccChHHHHHHHHHHHHHHHHHHHHHHhHhcC
Q 002136 839 SK-EKEVLALLSRLDLLNVHFTESPPGDANQSVHLVASEGLEAYLPLADMVDISAEVQRLSKRLSKMQSEYDGLVARLSS 917 (961)
Q Consensus 839 ~~-~~~~i~~l~~~~~~~v~~~~~~~~~~~~~v~~~v~~~~~~~~~l~~~id~~~e~~rl~k~~~kl~~~~~~~~~kl~n 917 (961)
+. +..+|..|++++. +.++...++.+..+...++..++++|+++.|.||+++|++||+|+++++++++++++++|+|
T Consensus 790 ~~~~~~~i~~l~~~~~--v~~~~~~~~~~~~~~~~~v~~~~ev~l~l~~~iD~~~e~~rLekel~kl~Kel~kl~~~L~n 867 (1052)
T PRK14900 790 QAGELARVHRVAGVEG--SRLVVAAATAPAPQSAVGVGPGFEVRVPLAGVIDLAAETARVDKEIGKVDQDLAVLERKLQN 867 (1052)
T ss_pred HHHHHHHHHHhhCCCe--eEeeccccccCcccceEEecCceEEEEECCcccCHHHHHhhHHHHHHHHHHHHHHHHHHhcC
Confidence 88 8889999998864 44432211112233333556789999999999999999999999999999999999999999
Q ss_pred chhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002136 918 SKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRST 956 (961)
Q Consensus 918 ~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~ 956 (961)
++|+.+||+++|+++++++++++++++++++.|+.|+.-
T Consensus 868 ~~f~~kap~~~veka~~kl~~~~~~l~~le~~l~~L~~~ 906 (1052)
T PRK14900 868 PSFVQNAPPAVVEKDRARAEELREKRGKLEAHRAMLSGS 906 (1052)
T ss_pred chhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999874
No 9
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.1e-171 Score=1598.71 Aligned_cols=810 Identities=27% Similarity=0.492 Sum_probs=721.7
Q ss_pred CCCCCCCCh-hhHHHHHHHHHhCCCCCCCCC--CCCCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeec
Q 002136 57 DTLPKTFDF-TSEERIYNWWESQGYFKPNFE--RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWL 133 (961)
Q Consensus 57 ~~~~~~~~~-~~E~~~~~~W~~~~~f~~~~~--~~~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~ 133 (961)
..+++.||+ ++|++||++|+++++|++..+ .++++|+|++|||||||.||||||+|+|++|+++||+||+||+|+|+
T Consensus 5 ~~~~~~~~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~ 84 (975)
T PRK06039 5 PEVDSQPDFPALEEEVLKFWKENDIFEKSIENREGGPEFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERR 84 (975)
T ss_pred cccCCCCCHHHHHHHHHHHHHHCCCcccCccccCCCCCEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCc
Confidence 457899999 899999999999999997654 46788999999999999999999999999999999999999999999
Q ss_pred CCCCCCCchHHHHHHHHHHHcCC-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHH
Q 002136 134 PGTDHAGIATQLVVEKMLAAEGI-KRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEA 212 (961)
Q Consensus 134 ~G~D~~Gl~~q~~vek~l~~~g~-~~~~~~~~~f~~~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~ 212 (961)
+||||||||||.+|||.+...+. +.+++|+++|+++|++|+.++++.|++||++||+|+||+|+|+||||.|.++|+|+
T Consensus 85 ~GwD~~GlPie~~vek~l~~~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~~~ 164 (975)
T PRK06039 85 AGWDTHGLPVELEVEKELGISGKKDIEEYGIEKFNEKCRESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVWWA 164 (975)
T ss_pred CCcCCCccHHHHHHHHHhCcccccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHHHH
Confidence 99999999999999987733322 34679999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCceEEcCeeeecCCCCCccccccccc--cccCCCeEEEEEEEecC-CCeeEEEEecCCCccCCCcEEEECCCC
Q 002136 213 FIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVE--YSEEPGTLYYIKYRVAG-RSDFLTIATTRPETLFGDVALAVNPQD 289 (961)
Q Consensus 213 F~~L~~~GlIy~~~~~v~w~p~~~t~lsd~Ev~--~~e~~~~~~~~~~~~~~-~~~~l~v~TtrPeTl~g~~av~v~P~~ 289 (961)
|.+||++||||||.++|+|||.|+|+|||+||+ |++..++++||+|++.+ ++.+|+|||||||||+||+||||||++
T Consensus 165 F~~l~~kGliyr~~~~v~wcp~~~T~Ls~~Ev~~~y~~~~~~~~~v~f~l~~~~~~~l~i~TTrP~Tl~~n~avaV~P~~ 244 (975)
T PRK06039 165 LKQLYDKGLLYKGYRVVPYCPRCETPLSNHEVAQGYKDVKDPSVYVKFKLKGEENEYLLAWTTTPWTLPSNLALAVHPDI 244 (975)
T ss_pred HHHHHHCCCEEecceeeeecCCCCCCccHHHHhhcccccCCceEEEEEEecCCCCCEEEEEECCccccccceEEEECCCC
Confidence 999999999999999999999999999999999 99999999999999974 567999999999999999999999998
Q ss_pred ---------chh-----------------------hhhccCeeeccCCC--C--CeeeeeecCccccCCCcceeEeCCCC
Q 002136 290 ---------EHY-----------------------SQFIGMMAIVPMTY--G--RHVPIISDKYVDKEFGTGVLKISPGH 333 (961)
Q Consensus 290 ---------~~y-----------------------~~l~g~~~~~P~~~--~--~~ipii~~~~V~~~~GTG~v~~~Pah 333 (961)
++| ++|+|++|.|||.. + +.+|||+++||++++|||+||+||||
T Consensus 245 ~Y~~~~~~~~~yi~a~~~~~~~~~~~~~~~~~~~G~~L~G~~~~~P~~~~~~~~~~~pii~~~~V~~~~GTG~V~~aPah 324 (975)
T PRK06039 245 DYVKVEGGGEVYILAEALLEKVLKEDYEVVETFKGSELEGLEYEPPFPYFADEKNAFRVVLADFVTTEDGTGIVHIAPAF 324 (975)
T ss_pred ceEEEecCCeEEEEhHHHHHHHhhcccEEEeeecCccccCCEEECCcccccCCcceeEEEecCccCCCCCccceeeCCCC
Confidence 566 78999999999952 3 47999999999999999999999999
Q ss_pred ChhHHHHHHHhCCCceeecCCCCcccccccccCCCchHHHHHHHHHHHHHcCCccccccccccCCcccCCCCceeeeecc
Q 002136 334 DHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSK 413 (961)
Q Consensus 334 ~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~ 413 (961)
|++||++|++||||+++++|++|+|++.+|.|+||.++|||++|++.|+++|++++.+++.|++|+|||||+|+++++++
T Consensus 325 g~~D~~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~v~eA~~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~g~pv~~~~~~ 404 (975)
T PRK06039 325 GEDDFEVGKKYGLPVVCPVDDDGRFTEEVPDYAGKFVKDADKEIIRDLKERGLLFKAETYEHSYPHCWRCDTPLIYYATE 404 (975)
T ss_pred ChHHHHHHHHcCCCccceeCCCceEcCCCccccCCCHHHhhHHHHHHHHhCCCEeeeeeecCCCCEeCCCCCEEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeccHHHHHHHHHHHcCCceeechhHHH-HHHHHHhcCCCceeeeccCCCcccceEEEcCCcccEEEecChHHHHHH
Q 002136 414 QWFVTMEPLAEKALHAVEKGELTIMPERFEK-IYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEK 492 (961)
Q Consensus 414 qwF~~~~~~~~~~~~~~~~~~~~~~P~~~~~-~~~~wl~~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~ 492 (961)
||||++++++++++++++ +++|+|+..++ ++.+||++++|||||||||||||||+|+|+. ++.+++..+..++...
T Consensus 405 qWFi~~~~~k~~ll~~~~--~i~~~P~~~~~~~~~~wl~~l~DW~ISRqr~WG~PIPiw~~~~-~g~~~v~~~~~el~~~ 481 (975)
T PRK06039 405 SWFIRVTKIKDRMLELNQ--KINWYPEHIKDGRFGKWLENARDWNISRNRYWGTPLPIWRCED-CGRIDVIGSIEELEEL 481 (975)
T ss_pred eeeEecHHHHHHHHHhhC--CeEEECcccchhhHHHHHhcCccceeeeccccCCcceEEEecC-CCeEEEeccHHHHHHH
Confidence 999999999999999985 59999999999 9999999999999999999999999999964 5668888887776543
Q ss_pred HHh-----------------hcCCCcccccCCCceeeeecCCCccccccCCCCCChhHHhhcCCcceEeeeccccccHHH
Q 002136 493 AHQ-----------------KYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVA 555 (961)
Q Consensus 493 ~~~-----------------~~~~~~~~~~~~dvldtWf~S~l~~~~~~~~p~~~~~~~~~~~P~d~~~~G~Dil~fw~~ 555 (961)
... .|+.+..++|++||||||||||+||+++++||.++++.|++|||+|++++|+||+|||++
T Consensus 482 ~g~~~~~~~l~~~~~d~~~~~~~~~~~~~r~~dVlDvWFdSg~~p~a~~~~p~~~~~~f~~~~Pad~~~~G~Di~r~Wf~ 561 (975)
T PRK06039 482 FGEDVEPIDLHRPYVDEVTLPCPDGGTMRRVPDVIDVWFDSGSMPYAQLHYPFENKEWFEKHFPADFIVEGIDQTRGWFY 561 (975)
T ss_pred hCCCcchhhhcccccccccccCCCCcceEeccccccceeecCCccHHHhCCcccChhhhhccCCceEEEechhhHhhHHH
Confidence 221 122234689999999999999999999999998765679999999999999999999999
Q ss_pred HHHHHHhHhcCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHhCCC-CCccccCHHH-HHHHH
Q 002136 556 RMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIER-LTANK 633 (961)
Q Consensus 556 ~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~~~-~~D~~f~~~~-~~~~~ 633 (961)
+|+++|..++|..||++|++||+|+|.+|+|||||+||+|+|.++|++||+|++||||++.++ ++|++|+++. +...+
T Consensus 562 ~l~~~~~~~~~~~pfk~v~~hG~Vld~~G~KMSKSlGNvIdP~dli~~yGaDalR~~lls~~~~~~D~~fs~~~~~~~~~ 641 (975)
T PRK06039 562 TLLALSTALFDRPPYKNVLVHGHVLDEDGQKMSKSLGNYVDPFEVFDKYGADALRWYLLSSSAPWEDLRFSEDGVREVVR 641 (975)
T ss_pred HHHHHHHHhcCCCcccEEEEeeeEECCCCCCcCCCCCCcCCHHHHHHHhChHHHHHHHHhCCCCCCCceechhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999988 9999999999 67789
Q ss_pred HHHHHHHHHHHHHHh--hCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhhhcCChHHHHHHHH
Q 002136 634 AFTNKLWNAGKFILQ--NLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETY 711 (961)
Q Consensus 634 ~~~nkl~N~~rf~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~i~ 711 (961)
+++++|||+++|+.. ++.++.... .......++..|+||+++++.+++.++++|++|+|+.|++.++
T Consensus 642 ~~l~kl~N~~~f~~~y~~~~~~~~~~-----------~~~~~~~~~~~D~wils~l~~li~~v~~a~e~y~~~~A~~~l~ 710 (975)
T PRK06039 642 KFLLTLWNVYSFFVLYANLDGFDYPP-----------AEDEVDSLNELDRWILSRLNSLVKEVTEALDNYDITKAARAIR 710 (975)
T ss_pred HHHHHHHHHHHHHHHHhhhccCCccc-----------cccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 999999999999863 333221100 0001123567899999999999999999999999999999999
Q ss_pred HHHHHhhhHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhcC--CCCceeecCCCCCCC
Q 002136 712 DFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRK--RKEALIVSPWPQTSL 789 (961)
Q Consensus 712 ~f~~~~~~n~Yle~~K~~l~~~~~~~~~~~~~~~l~~vl~~~l~LL~Pf~P~itEeiw~~L~~--~~~si~~~~wP~~~~ 789 (961)
+|+ +++||||++.+|++++...+...+.+++.+|+.+|+.+++||||||||+||+||+.|+. ..+||+.++||+++.
T Consensus 711 ~f~-~~lsn~Yi~~~k~r~w~~~~~~~~~~a~~~L~~~L~~l~~lLaPf~Pf~aEei~~~L~~~~~~~sv~~~~~P~~~~ 789 (975)
T PRK06039 711 DFV-DDLSNWYIRRSRRRFWKEEDDPDKLAAYATLYTVLETLSRLAAPFTPFIAEEIYQNLTREDAPESVHLADWPEVDE 789 (975)
T ss_pred HHH-HHHHHHHHHHhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhccccCCCCeeEecCCCCCcc
Confidence 999 89999999999998887644445677889999999999999999999999999999984 457999999999885
Q ss_pred -CCChHHHHHHHHHHHHHHHHHhhhhhcccCCCceeeEEEE-cCHHHHHHHHhHHHHHHHHcCCccc--cEEeecCCCCC
Q 002136 790 -PRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISASIV-ANEEVIQYISKEKEVLALLSRLDLL--NVHFTESPPGD 865 (961)
Q Consensus 790 -~~d~~~~~~~~~~~~~v~~ir~~r~~~~i~~~~~~~~~i~-~~~~~~~~~~~~~~~i~~l~~~~~~--~v~~~~~~~~~ 865 (961)
+.|+++++.|+.++++++.+|++|++.+++++++++.+++ .+.+..+.++...++|+.+.++... .+.+... .
T Consensus 790 ~~~d~~le~~~~~~~~ii~~~r~~r~~~~i~~~~pl~~~~v~~~~~~~~~~~~~~~~i~~~~nv~~v~~~~~~~~~---~ 866 (975)
T PRK06039 790 SLIDEELEEAMDLVREIVSLGRSARKKAGIKVRQPLSKITVAEDEEVAEALERYEDLIKDELNVKEVPEEVEIEEE---A 866 (975)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccceEEEecCHHHHHHHHHHHHHHHHHhCcccchhheEEEEe---c
Confidence 7789999999999999999999999999999999986555 4443556677778888888776532 2223222 2
Q ss_pred CCCcEEEEecCCeEEEecCC
Q 002136 866 ANQSVHLVASEGLEAYLPLA 885 (961)
Q Consensus 866 ~~~~v~~~v~~~~~~~~~l~ 885 (961)
+++.... ..++..|+|.+.
T Consensus 867 ~~~~~~~-~~~~~~v~ld~~ 885 (975)
T PRK06039 867 PEGYAAA-EEGGGTVALDTE 885 (975)
T ss_pred CCCceEE-eeCCEEEEEECC
Confidence 3444443 336788887754
No 10
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=100.00 E-value=6.4e-171 Score=1586.52 Aligned_cols=792 Identities=21% Similarity=0.384 Sum_probs=698.5
Q ss_pred CCCCCCCCCh-hhHHHHHHHHHhCCCCCCCCC--CCCCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeee
Q 002136 56 KDTLPKTFDF-TSEERIYNWWESQGYFKPNFE--RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLW 132 (961)
Q Consensus 56 ~~~~~~~~~~-~~E~~~~~~W~~~~~f~~~~~--~~~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~ 132 (961)
...+++.||+ ++|++|+++|+++++|++..+ .++++|+|++|||||||.||||||++++++|+++||+||+||+|+|
T Consensus 65 ~~~~~~~~~~~~~E~~~~~~W~e~~~f~~~~~~~~~~~~Fv~~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~ 144 (1205)
T PTZ00427 65 FTGVSENPNIVEEEEKVLKYWKSIDAFNTSNKLAKNKKAYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVER 144 (1205)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHhCCCcccCccccCCCCcEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeecc
Confidence 3468889999 899999999999999998764 4567899999999999999999999999999999999999999999
Q ss_pred cCCCCCCCchHHHHHHHHHHHcCC-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHH
Q 002136 133 LPGTDHAGIATQLVVEKMLAAEGI-KRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVE 211 (961)
Q Consensus 133 ~~G~D~~Gl~~q~~vek~l~~~g~-~~~~~~~~~f~~~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~ 211 (961)
++||||||+|||.+|||.+...+. ...++++++|++.|++|+.+|.+.+++|+++||+|+||+++|+|||+.|.++|+|
T Consensus 145 ~~GwD~hGlPiE~~vEk~lg~~~k~~i~~~g~~~f~e~c~~~~~~~~~~~~~~~~rlG~~iDw~~~y~T~d~~~~~~v~~ 224 (1205)
T PTZ00427 145 KFGWDCHGLPIEYEIEKENNINKKEDILKMGIDVYNEKCRGIVLKYSNEWVKTVERIGRWIDFKNDYKTMDKTFMESVWW 224 (1205)
T ss_pred CCccCCCCcHHHHHHHHHhCCCcccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCcEEecCCCcCcCCHHHHHHHHH
Confidence 999999999999999998733222 2346999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCceEEcCeeeecCCCCCcccccccc--ccccCCCeEEEEEEEecCC--------------------------
Q 002136 212 AFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEV--EYSEEPGTLYYIKYRVAGR-------------------------- 263 (961)
Q Consensus 212 ~F~~L~~~GlIy~~~~~v~w~p~~~t~lsd~Ev--~~~e~~~~~~~~~~~~~~~-------------------------- 263 (961)
+|.+||++|||||+.++|+|||.|+|+|||+|| +|++..++++||+|++.+.
T Consensus 225 ~f~~L~ekGlIYr~~k~V~wcp~c~TaLS~~EV~~~ykd~~dpsi~v~F~l~~~~~~~~~~~~~~~~~~~~~~~~~i~y~ 304 (1205)
T PTZ00427 225 VFSELYKNNYVYKSFKVMPYSCKCNTPISNFELNLNYKDTPDPSIIISFVLCSDFPKVEEECNIEEDKQLLGEKYSVLYN 304 (1205)
T ss_pred HHHHHHHCCCEEecceeeccCCCCCCchhHHHhhcccccccCceEEEEeecccccccccccccccccccccccceeeccc
Confidence 999999999999999999999999999999999 7999999999999988641
Q ss_pred ---------------------CeeEEEEecCCCccCCCcEEEECCCCc--hh----------------------------
Q 002136 264 ---------------------SDFLTIATTRPETLFGDVALAVNPQDE--HY---------------------------- 292 (961)
Q Consensus 264 ---------------------~~~l~v~TtrPeTl~g~~av~v~P~~~--~y---------------------------- 292 (961)
+.+++|||||||||+||+||||||+++ +|
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~lliwTTtPwTLpan~AlaVnPd~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~ 384 (1205)
T PTZ00427 305 NKRENSNNGNNNSTNNVCYAQHSEILAWTTTPWTLPSNLALCVNEHFTYLRIHHVKSNRVVIVGECRLEWIMKELKWNVE 384 (1205)
T ss_pred cccccccccccccccccccCCCCEEEEEECCchhhhhceEEEECCCCeEEEEEecCCCeEEEEehHHHHHHHHhhccccc
Confidence 368999999999999999999999965 12
Q ss_pred ----------hhhccCeeeccCC--------CCCeeeeeecCccccCCCcceeEeCCCCChhHHHHHHHhCC--C----c
Q 002136 293 ----------SQFIGMMAIVPMT--------YGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGL--P----I 348 (961)
Q Consensus 293 ----------~~l~g~~~~~P~~--------~~~~ipii~~~~V~~~~GTG~v~~~Pah~~~D~~~~~~~~l--~----~ 348 (961)
++|+|.+|.+|+. .++.+|||+|+||++++|||+||+|||||++||++|++||| | +
T Consensus 385 ~~~v~~~~~G~~L~g~~Y~pl~~~~~~~~~~~~~~~pVi~~d~V~~~~GTGiVh~aPahg~~Dy~v~~k~gL~~~~~~~~ 464 (1205)
T PTZ00427 385 DLKIVNRFKGKELKGLRYKPLFTNFYEKYNFKERAYKILADDFVTDDAGTGIVHCAPTYGEDDFRVCKKNGVIDPEKNIF 464 (1205)
T ss_pred ccEEEEEeechhhCCCeeeCCccccccccccCCceeEEEccCccCCCCCceeeEecCCCChhHHHHHHHcCCCCcccccc
Confidence 2467888888872 26789999999999999999999999999999999999999 2 7
Q ss_pred eeecCCCCcccccccccCCCchHHHHHHHHHHHHHcCCccccccccccCCcccCCCCceeeeeccceeeeccHHHHHHHH
Q 002136 349 LNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALH 428 (961)
Q Consensus 349 ~~~~~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~qwF~~~~~~~~~~~~ 428 (961)
++++|++|+|++++|.|+||.++|||+.|++.|+++|++++.+++.|+||+|||||+||++++++|||++++++++++++
T Consensus 465 ~~~vd~~G~~~~~~~~~~G~~v~dA~~~Ii~~Lk~~g~L~~~e~~~H~yP~cwR~~tpli~~a~~QWFI~~~~~k~~~l~ 544 (1205)
T PTZ00427 465 IDPLDANGYFTNEVEEVQNLYIKEADNVIKKKLKNENRLLSNNTIVHSYPFCWRSDTPLIYRAIPAWFIRVSNSTNELVK 544 (1205)
T ss_pred ccccCCCceecCCCcccCCCCHHHhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEecceeEEeCcHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHcCCceeechhH-HHHHHHHHhcCCCceeeeccCCCcccceEEEcCCcccEEEecChHHHHHHHHh------------
Q 002136 429 AVEKGELTIMPERF-EKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQ------------ 495 (961)
Q Consensus 429 ~~~~~~~~~~P~~~-~~~~~~wl~~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 495 (961)
+. ++++|+|+++ +++|.+||++++|||||||||||||||+|+|+. ++.+++..+.+++......
T Consensus 545 ~~--~~i~w~P~~~~~~r~~~wl~n~~DWcISRqR~WGtPIPvW~~~~-~~~~~~i~s~~el~~~~~~~~~~dlh~~~iD 621 (1205)
T PTZ00427 545 NN--ETTYWIPAHIKEKKFHNWIKDAKDWCISRNRYWGTPIPIWADEK-METVICVESIKHLEELSGVKNINDLHRHFID 621 (1205)
T ss_pred cC--CccEEeCchhhHhHHHHHHhcCccceeeeccccCccceeEEcCC-CCeEeccCCHHHHHHHhccccchhhcccccC
Confidence 65 5799999998 699999999999999999999999999999954 4567777777665433220
Q ss_pred ------hcCC-CcccccCCCceeeeecCCCccccccCCCCC-ChhHHhhcCCcceEeeeccccccHHHHHHHHHhHhcCC
Q 002136 496 ------KYGK-NVEIYQDPDVLDTWFSSALWPFSTLGWPDV-SADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGS 567 (961)
Q Consensus 496 ------~~~~-~~~~~~~~dvldtWf~S~l~~~~~~~~p~~-~~~~~~~~~P~d~~~~G~Dil~fw~~~~i~~~~~l~~~ 567 (961)
.+|. ...++|++||||||||||+||+++++||.+ ++++|+++||+|++++|+||+|||+++|+++|+.++|+
T Consensus 622 ~~~~~~~~g~~~~~~~r~~DVlD~WFdSg~~p~a~~~~P~~~~~~~f~~~fPaD~i~eG~Dq~rgWf~s~l~~s~~l~~~ 701 (1205)
T PTZ00427 622 HIEIKNPKGKTYPKLKRIPEVFDCWFESGSMPYAKVHYPFSTEKEDFHKIFPADFIAEGLDQTRGWFYTLLVISTLLFDK 701 (1205)
T ss_pred hhhccCCccccccceeecCceEEEEEeCCCChHHHhCCCcccchhhHhccCCceEEEEecchhccHHHHHHHHHHHhcCC
Confidence 0111 124899999999999999999999999985 35789999999999999999999999999999999999
Q ss_pred CCceEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHhCC-C-CCccccCHHHHH-HHHHHHHHHHHHHH
Q 002136 568 VPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGT-A-GQDLSLSIERLT-ANKAFTNKLWNAGK 644 (961)
Q Consensus 568 ~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~~-~-~~D~~f~~~~~~-~~~~~~nkl~N~~r 644 (961)
.||++|++||||+|.+|+|||||+||||||.++|++||||+|||||++.+ . ++|++|+++.+. ..+++++++||+++
T Consensus 702 ~PfK~VlvHG~Vld~dG~KMSKSlGNvIDP~evI~kYGADaLR~~Lls~~~~~~~Dl~Fse~~v~e~~r~~l~klwN~~r 781 (1205)
T PTZ00427 702 APFKNLICNGLVLASDGKKMSKRLKNYPDPLYILDKYGADSLRLYLINSVAVRAENLKFQEKGVNEVVKSFILPFYHSFR 781 (1205)
T ss_pred CCcceeEEccEEEcCCCCCcccCCCCCCCHHHHHHhcCCcHHHHHHHhcCCCCCcccccCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999864 4 799999999986 58999999999999
Q ss_pred HHHhhCCCCCchhhHHHHHhhcc--chhhhhcCCCchhHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhhHHH
Q 002136 645 FILQNLPSQNDISRWEILLAYKF--DEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWY 722 (961)
Q Consensus 645 f~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~i~~f~~~~~~n~Y 722 (961)
|+.+++.+...... .++ .........+..|+||+++++.+++.|+++|++|+|+.|++++++|++ ++||||
T Consensus 782 F~~~~i~~~~~~~~------~~f~~~~~~~~~~~~~~DrWILs~l~~li~~v~~~me~Y~f~~A~~~i~~Fi~-~lsnwY 854 (1205)
T PTZ00427 782 FFSQEVTRYECLNK------KQFLFNTDYIYKNDNIMDQWIFSSVQSLTKSVHTEMKAYKLYNVLPKLLQFIE-NLTNWY 854 (1205)
T ss_pred HHHhcccccccccc------ccCCcCcccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-HhccHH
Confidence 99987653211000 000 000001234568999999999999999999999999999999999996 699999
Q ss_pred HHHhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhcCC-------------------------CC
Q 002136 723 IEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR-------------------------KE 777 (961)
Q Consensus 723 le~~K~~l~~~~~~~~~~~~~~~l~~vl~~~l~LL~Pf~P~itEeiw~~L~~~-------------------------~~ 777 (961)
|+++|++++.+.+...+.+++.+|+++|..+++||||||||+||+||++|+.. .+
T Consensus 855 Ie~~K~rl~~~~~~~~~~~a~~tL~~vL~~~~~LLaPf~PfiaEeiyq~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1205)
T PTZ00427 855 IRLNRDRMRGSLGEENCLQSLCTTYRTLHLFTVLMAPFTPFITEYIYQQLRRVKSTNEHNENNETGNTKEGDLNRGVIHK 934 (1205)
T ss_pred HHHcchhhccCCCcHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHhhhccccccccccccccccccccccccCCCC
Confidence 99999999876334456788999999999999999999999999999999631 25
Q ss_pred ceeecCCCCCCC-C-CChHHHHHHHHHHHHHHHHHhhhhhcccCCCceeeEE-EE-cCHHHHHHHHhHHHHHHHHcCCcc
Q 002136 778 ALIVSPWPQTSL-P-RHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISAS-IV-ANEEVIQYISKEKEVLALLSRLDL 853 (961)
Q Consensus 778 si~~~~wP~~~~-~-~d~~~~~~~~~~~~~v~~ir~~r~~~~i~~~~~~~~~-i~-~~~~~~~~~~~~~~~i~~l~~~~~ 853 (961)
|||++.||+++. . .|+++++.|+.++++++.+|++|++.+++.++++..+ |. .+++..+.++...++|....++
T Consensus 935 Svh~~~~P~~~~~~~~d~~~e~~~~~~~~ii~~~R~~R~~~~i~~r~pl~~~~v~~~~~~~~~~~~~~~~~i~~e~nv-- 1012 (1205)
T PTZ00427 935 SVHFIMLPQVDEKYIIDYEIIELIEKMKDVILLGRVLRERRKVASKKPLKSITILHPNESYFKNFDQISNYIKEELNV-- 1012 (1205)
T ss_pred eeEeeCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccceeEEecCcHHHHHHHHHHHHHHHHhhCc--
Confidence 999999999875 3 6899999999999999999999999999999999854 43 4455566677777888877665
Q ss_pred ccEEee
Q 002136 854 LNVHFT 859 (961)
Q Consensus 854 ~~v~~~ 859 (961)
.++.+.
T Consensus 1013 ~~v~~~ 1018 (1205)
T PTZ00427 1013 LNVECS 1018 (1205)
T ss_pred ceEEEE
Confidence 445554
No 11
>PLN02882 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.6e-166 Score=1555.10 Aligned_cols=785 Identities=25% Similarity=0.405 Sum_probs=696.8
Q ss_pred CCCCCh-hhHHHHHHHHHhCCCCCCCCC--CCCCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCC
Q 002136 60 PKTFDF-TSEERIYNWWESQGYFKPNFE--RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGT 136 (961)
Q Consensus 60 ~~~~~~-~~E~~~~~~W~~~~~f~~~~~--~~~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~ 136 (961)
++.||| ++|++|+++|+++++|++..+ .++++|+|++||||+||.||||||+++|++|+++||+||+||+|+|++||
T Consensus 5 ~~~~~~~~~E~~~~~~W~e~~~f~~~~~~~~~~~~f~~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~Gw 84 (1159)
T PLN02882 5 GKDFSFPKQEEKILSLWSEIDAFKTQLKRTEGLPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGW 84 (1159)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCccccccccCCCCCEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCcc
Confidence 467998 899999999999999998654 35778999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHcCCC----ccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHH
Q 002136 137 DHAGIATQLVVEKMLAAEGIK----RVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEA 212 (961)
Q Consensus 137 D~~Gl~~q~~vek~l~~~g~~----~~~~~~~~f~~~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~ 212 (961)
||||+|||.++|+.+ |++ ..++++++|.+.|++|+.+|.+.+++|+++||+|+||+++|+|||+.|.++|+|+
T Consensus 85 D~hGlPiE~~vek~l---gi~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~~ 161 (1159)
T PLN02882 85 DCHGLPVEYEIDKKL---GIKRRDDVLKMGIDKYNEECRSIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWV 161 (1159)
T ss_pred CCCCcHHHHHHHHHc---CCCCccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHHH
Confidence 999999999998776 543 3459999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCceEEcCeeeecCCCCCcccccccc--ccccCCCeEEEEEEEecCCC--eeEEEEecCCCccCCCcEEEECCC
Q 002136 213 FIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEV--EYSEEPGTLYYIKYRVAGRS--DFLTIATTRPETLFGDVALAVNPQ 288 (961)
Q Consensus 213 F~~L~~~GlIy~~~~~v~w~p~~~t~lsd~Ev--~~~e~~~~~~~~~~~~~~~~--~~l~v~TtrPeTl~g~~av~v~P~ 288 (961)
|.+|+++|||||+.++|+|||.|+|+|||+|+ +|++..++++||+|++.++. .+++||||||||||||+||||||+
T Consensus 162 f~~l~~kGliyr~~~~v~wcp~~~TaLs~~E~~~~Yk~~~~~si~v~F~l~~~~~~~~l~iwTTtPwTLpsn~Al~VnP~ 241 (1159)
T PLN02882 162 FKQLFEKGLVYKGFKVMPYSTACKTPLSNFEAGLNYKDVSDPAVMVSFPIVGDPDNASFVAWTTTPWTLPSNLALCVNPN 241 (1159)
T ss_pred HHHHHHCCCEEecceeEeecCCCCCCcchhhhhhhcccCCCcEEEEEEEecCCCCCcEEEEEeCCccccccCeEEEECCC
Confidence 99999999999999999999999999999888 79999999999999997653 799999999999999999999999
Q ss_pred Cc------------------hhh-------------------------------hhccCeeeccCC-----CCCeeeeee
Q 002136 289 DE------------------HYS-------------------------------QFIGMMAIVPMT-----YGRHVPIIS 314 (961)
Q Consensus 289 ~~------------------~y~-------------------------------~l~g~~~~~P~~-----~~~~ipii~ 314 (961)
++ ||. +|+|++|.+||. .++.+|||+
T Consensus 242 ~~Y~~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~G~~L~g~~y~p~~~~~~~~~~~~~~Vi~ 321 (1159)
T PLN02882 242 FTYVKVRNKYTGKVYIVAESRLSALPTAKPKSKKGSKPENAAEGYEVLAKVPGSSLVGKKYEPLFDYFSEFSDTAFRVVA 321 (1159)
T ss_pred CcEEEEEecCCCeEEEEhHHHHHHHHhhhhcccccccccccccccEEEEEecchhhcCCEEECCccccccccCceEEEEc
Confidence 86 221 688999987762 146899999
Q ss_pred cCccccCCCcceeEeCCCCChhHHHHHHHhCC-----CceeecCCCCcccccccccCCCchHHHHHHHHHHHHHcCCccc
Q 002136 315 DKYVDKEFGTGVLKISPGHDHNDYLLARKLGL-----PILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVK 389 (961)
Q Consensus 315 ~~~V~~~~GTG~v~~~Pah~~~D~~~~~~~~l-----~~~~~~~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~ 389 (961)
++||++++|||+||+|||||++||++|++||| |+++++|++|+|++.+|.|+||.++|||+.|++.|+++|++++
T Consensus 322 ~~~V~~~~GTGiVh~aPahG~~Dy~v~~~~gl~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~eA~~~Ii~~Lk~~g~L~~ 401 (1159)
T PLN02882 322 DDYVTDDSGTGVVHCAPAFGEDDYRVCLANGIIEKGGNLPVPVDDDGCFTEKVTDFSGRYVKDADKDIIAAIKAKGRLVK 401 (1159)
T ss_pred cCccCCCCCcceeEecCCCChhHHHHHHHcCCCccccCccceECCCceEccCCcccCCCCHHHhhHHHHHHHHHCCCccc
Confidence 99999999999999999999999999999999 7999999999999999999999999999999999999999999
Q ss_pred cccccccCCcccCCCCceeeeeccceeeeccHHHHHHHHHHHcCCceeechhH-HHHHHHHHhcCCCceeeeccCCCccc
Q 002136 390 KEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERF-EKIYNHWLSNIKDWCISRQLWWGHRI 468 (961)
Q Consensus 390 ~~~~~~~~p~~~r~~~~v~~~~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~-~~~~~~wl~~l~DW~ISRq~~WG~pI 468 (961)
.+.+.|+||+|||||+|+++++++|||++++++++++++.. ++++|+|++. +++|.+||++++||||||||||||||
T Consensus 402 ~~~~~Hsyp~cwR~~tpli~~a~~qWFi~~~~~k~~~l~~~--~~i~w~P~~~~~~r~~~wl~~~~DW~ISRqR~WGtPI 479 (1159)
T PLN02882 402 SGSITHSYPFCWRSDTPLIYRAVPSWFVKVEEIKDRLLENN--KQTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPL 479 (1159)
T ss_pred eeeeecCCCEeeCCCCEEEEEecceeEEEcHHHHHHHHHhh--CCcEEECCcchhhHHHHHHhcCcccceeeccccCCcc
Confidence 99999999999999999999999999999999999999975 5799999999 58999999999999999999999999
Q ss_pred ceEEEcCCcccEEEecChHHHHHHHH-----------------hhcCC-CcccccCCCceeeeecCCCccccccCCCCCC
Q 002136 469 PVWYIVGKEEEYIVARNADEALEKAH-----------------QKYGK-NVEIYQDPDVLDTWFSSALWPFSTLGWPDVS 530 (961)
Q Consensus 469 P~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~-~~~~~~~~dvldtWf~S~l~~~~~~~~p~~~ 530 (961)
|+|+|++ ++.+++..+.+++..... ..+|. ...++|++||||||||||+||++.+|||.++
T Consensus 480 Pvw~~~~-~~~~~~~~s~~el~~~~~~~~~dlh~~~id~i~~p~~~~~~~~~~~r~~dVlD~WFdSg~~p~a~~~~p~e~ 558 (1159)
T PLN02882 480 PIWISDD-GEEVVVIGSIAELEKLSGVKVTDLHRHFIDHITIPSSRGPEFGVLRRVDDVFDCWFESGSMPYAYIHYPFEN 558 (1159)
T ss_pred ceEEeCC-CCeEEecCcHHHHHHHhCCchhhccccchhhhccccccCCchhceEecCceeeeeeccCccHHHHcCCcccC
Confidence 9999964 445777777776654321 11111 1358999999999999999999999999876
Q ss_pred hhHHhhcCCcceEeeeccccccHHHHHHHHHhHhcCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHH
Q 002136 531 ADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALR 610 (961)
Q Consensus 531 ~~~~~~~~P~d~~~~G~Dil~fw~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR 610 (961)
.+.|+.+||+|++++|+||+|||+++|+++|.+++|+.||++|++||||+|.+|+|||||+||+|+|.++|++||||+||
T Consensus 559 ~~~f~~~~PaD~i~eG~Dq~RgWf~~ll~~s~~l~~~~pfk~VivhG~vlde~G~KMSKSlGNvIdP~evi~~YGADaLR 638 (1159)
T PLN02882 559 KELFEKNFPADFVAEGLDQTRGWFYTLMVLSTALFDKPAFKNLICNGLVLAEDGKKMSKSLKNYPDPNEVIDKYGADALR 638 (1159)
T ss_pred hhHhhccCCceEEEEecchhhhHHHHHHHHHHHhcCCCCcceeEEccEEECCCCCCcccCCCCCCCHHHHHHHhCcHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCC--CCccccCHHHHHHH-HHHHHHHHHHHHHHHhhCCCCCchhhHHHHHhhccch--hhhh-cCCCchhHHHH
Q 002136 611 FTISLGTA--GQDLSLSIERLTAN-KAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDE--EECL-CKAPLPECWVV 684 (961)
Q Consensus 611 ~~L~~~~~--~~D~~f~~~~~~~~-~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~D~~il 684 (961)
|||++++. ++|++|+.+.+.+. +++++++||+++|+.+++.+..... ..++.. .... ...+..|+||+
T Consensus 639 ~~Ll~s~~~~~~d~~fs~~~v~~~~~~~l~kl~Na~rfl~~~~~~~~~~~------~~~~~p~~~~~~~~~~~~~D~wIl 712 (1159)
T PLN02882 639 LYLINSPVVRAEPLRFKEEGVFGVVKDVFLPWYNAYRFLVQNAKRLEVEG------GAPFVPLDLAKLQNSANVLDRWIN 712 (1159)
T ss_pred HHHHhCCcccCcCcccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc------ccCCCccccccccccCCHHHHHHH
Confidence 99998654 79999999999875 6799999999999988764321000 000000 0000 12356899999
Q ss_pred HHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhhHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhh
Q 002136 685 SKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFV 764 (961)
Q Consensus 685 ~~l~~~~~~v~~a~e~~~f~~A~~~i~~f~~~~~~n~Yle~~K~~l~~~~~~~~~~~~~~~l~~vl~~~l~LL~Pf~P~i 764 (961)
++++.+++.++++|++|+|+.|++.+++|++ ++|||||+.+|+|++.+.+...+++++.+|+++|..+++||+|||||+
T Consensus 713 s~l~~li~~v~~~me~y~f~~A~~~I~~Fv~-~lsN~YIe~~Kprl~~~~~~~~~~~al~tL~~vL~~l~~LLaPfmPf~ 791 (1159)
T PLN02882 713 SATQSLVKFVREEMGAYRLYTVVPYLVKFID-NLTNIYVRFNRKRLKGRTGEEDCRTALSTLYNVLLTSCKVMAPFTPFF 791 (1159)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-HHhHHHHHhCCHhhhCCCChHHHHHHHHHHHHHHHHHHHHhhchhhHH
Confidence 9999999999999999999999999999985 799999999999999765555678899999999999999999999999
Q ss_pred HHHHHHHhcC----CCCceeecCCCCCCC-CCChHHHHHHHHHHHHHHHHHhhhhhcccCCCceeeEEEE--cCHHHHHH
Q 002136 765 TEELWQSLRK----RKEALIVSPWPQTSL-PRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISASIV--ANEEVIQY 837 (961)
Q Consensus 765 tEeiw~~L~~----~~~si~~~~wP~~~~-~~d~~~~~~~~~~~~~v~~ir~~r~~~~i~~~~~~~~~i~--~~~~~~~~ 837 (961)
||+||++|+. ..+||+++.||+++. +.|+++++.|+.++++++.+|++|++.+++.+++++..++ .+.+....
T Consensus 792 aEeI~q~L~~~~~~~~~SVh~~~~P~~~~~~~d~~le~~~~~~~~ii~~~r~~r~~~~~~~~~pl~~~~~~~~~~~~~~~ 871 (1159)
T PLN02882 792 TEVLYQNLRKVLPGSEESIHYCSFPQVDEGELDERIEQSVSRMQTVIELARNIRERHNKPLKTPLKEMVVVHPDAEFLDD 871 (1159)
T ss_pred HHHHHHHhccccCCCCCceeecCCCCcchhhcchhHHHHHHHHHHHHHHHHHHHHHcCCCCCCccceeeEecCCHHHHHH
Confidence 9999999975 347999999999874 7789999999999999999999999999999998886544 34444433
Q ss_pred H-HhHHHHHHHHcCCccccEEee
Q 002136 838 I-SKEKEVLALLSRLDLLNVHFT 859 (961)
Q Consensus 838 ~-~~~~~~i~~l~~~~~~~v~~~ 859 (961)
+ ....++|....++ .++.+.
T Consensus 872 ~~~~~~~~i~~e~nv--~~v~~~ 892 (1159)
T PLN02882 872 ITGKLKEYVLEELNV--RSLVPC 892 (1159)
T ss_pred HHHHHHHHHHHhhCc--ceEEEe
Confidence 3 5666777766655 455554
No 12
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.4e-163 Score=1508.68 Aligned_cols=772 Identities=32% Similarity=0.591 Sum_probs=701.0
Q ss_pred CCCCCCCCh-hhHHHHHHHHHhCCCCCCCCCCCCCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCC
Q 002136 57 DTLPKTFDF-TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (961)
Q Consensus 57 ~~~~~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G 135 (961)
.++++.||+ ++|++||++|+++++|++..+.++++|+|++|||||||.||||||++++++|+++||+||+||+|+|++|
T Consensus 4 ~~~~~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G 83 (800)
T PRK13208 4 PELPKKYDPEELEEKWQKIWEEEGTYKFDPDERKPVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQG 83 (800)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCcccccccCCCcEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCC
Confidence 357889999 8999999999999999987665678899999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHH
Q 002136 136 TDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIR 215 (961)
Q Consensus 136 ~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~ 215 (961)
|||||+|||.++++.+ |+++.++++++|++.|++|++++++.|++||++||+++||+|+|+|+||+|.++|+|+|.+
T Consensus 84 ~D~~Glpie~~~ek~~---g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~~f~~ 160 (800)
T PRK13208 84 WDDNGLPTERKVEKYY---GIRKDDISREEFIELCRELTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQKSFLD 160 (800)
T ss_pred cCCCcchHHHHHHHHh---CCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHHHHHH
Confidence 9999999999888744 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCceEEcCeeeecCCCCCccccccccccccCCCeEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCchhhhh
Q 002136 216 LHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQF 295 (961)
Q Consensus 216 L~~~GlIy~~~~~v~w~p~~~t~lsd~Ev~~~e~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~y~~l 295 (961)
|+++|+||++.++|+|||.|+|+|||+||+|++..+.++||+|++.+ +.+++|||||||||+||+||||||++++|++|
T Consensus 161 L~~~Gliy~~~~~v~wcp~~~t~Lsd~ev~~~~~~~~~~~ikf~~~~-~~~l~v~TtrPeTl~g~~ai~v~p~~~~~~~l 239 (800)
T PRK13208 161 LYKKGLIYRAEAPVLWCPRCETAIAQAEVEYREREGKLNYIKFPVED-GEEIEIATTRPELLPACVAVVVHPDDERYKHL 239 (800)
T ss_pred HHHCCCeeecCcccccCCCCCCccchhhhccccccceEEEEEEEecC-CCEEEEEeCCcchhhhCeEEEECCCchHHHHh
Confidence 99999999999999999999999999999999999999999999985 46999999999999999999999999999999
Q ss_pred ccCeeeccCCCCCeeeeeecCccccCCCcceeEeCCCCChhHHHHHHHhCCCceeecCCCCcccccccccCCCchHHHHH
Q 002136 296 IGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARK 375 (961)
Q Consensus 296 ~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~v~~~Pah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~ar~ 375 (961)
+|+++.+|++ ++++|||+++||++++|||+||+||+||++||+++++||||+++++|++|++++++|.|+||++++||+
T Consensus 240 ~g~~~~~P~~-~~~ipii~~~~V~~~~GTG~V~~~p~hd~~D~~~~~~~~l~~~~~i~~~G~~~~~~g~~~G~~~~~a~~ 318 (800)
T PRK13208 240 VGKTAIVPLF-GVEVPILADPLVDPDFGTGAVMICTFGDKTDVTWWRELNLPTRIIIDEDGRMTEAAGKLAGLTIEEARK 318 (800)
T ss_pred cCCEEEcCCC-CCcceEECCCccCCCCCcceEEeCCCCCHHHHHHHHHcCCCcccccCCCceEecCCcccCCCCHHHHHH
Confidence 9999999994 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCccccccccccCCcccCCCCceeeeeccceeeeccHHHHHHHHHHHcCCceeechhHHHHHHHHHhcCC-
Q 002136 376 KLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIK- 454 (961)
Q Consensus 376 ~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~~l~- 454 (961)
+|++.|+++|++.+.+++.|++|+|||||++|++++++||||++++++++++++++ +++|+|++.++++.+||++++
T Consensus 319 ~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~qwfl~~~~~~~~~~~~~~--~~~~~P~~~~~~~~~~l~~~~~ 396 (800)
T PRK13208 319 KIVEDLKSGGLLGKQEPIKHNVKFCERCDTPLEILVTRQWFIKVLDLKEELLERGK--EINWYPEHMRVRLENWIEGLNW 396 (800)
T ss_pred HHHHHHHhCCCeeceeeeeccCCccCCCCCEEEEeccceeeEeCHHHHHHHHHhhc--CcEEECHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999995 589999999999999999988
Q ss_pred CceeeeccCCCcccceEEEcCCcccEEEecChHHH----HHHH-----HhhcCCCcccccCCCceeeeecCCCccccccC
Q 002136 455 DWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEA----LEKA-----HQKYGKNVEIYQDPDVLDTWFSSALWPFSTLG 525 (961)
Q Consensus 455 DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~----~~~~-----~~~~~~~~~~~~~~dvldtWf~S~l~~~~~~~ 525 (961)
||||||||+||||||+|+|++ ++..+++. .... ...+ ...||. ..++|++|||||||||++||++++|
T Consensus 397 DW~ISRqr~WG~pIP~~~~~~-~g~~~~~~-~~~l~~~~~~d~~~~~~~~~~g~-~~~~~~~dvlD~WfdS~~~~~~~~~ 473 (800)
T PRK13208 397 DWCISRQRYFGTPIPVWYCKD-CGHPILPD-EEDLPVDPTKDEPPGYKCPQCGS-PGFEGETDVMDTWATSSITPLIVTG 473 (800)
T ss_pred CceeeeccccCCcceEEEeCC-CCCeecCc-hhhhccCchhhccccccccccCC-cCEEecCCEEEEEEeCCchHHHHhC
Confidence 999999999999999999964 44444331 1111 0001 112232 3588999999999999999999999
Q ss_pred CCCCChhHHhhcCCcceEeeeccccccHHHHHHHHHhHhcCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhhcC
Q 002136 526 WPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFG 605 (961)
Q Consensus 526 ~p~~~~~~~~~~~P~d~~~~G~Dil~fw~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yG 605 (961)
||.+. .+|++|||+|++++|+||++||+++|++++..+.+..||++|++||+++|.+|+|||||+||+|+|.+++++||
T Consensus 474 ~~~~~-~~~~~~~P~d~~~~G~Di~~~w~~~~l~~~~~~~~~~Pf~~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~~yg 552 (800)
T PRK13208 474 WERDE-DLFEKVFPMDLRPQGHDIIRTWLFYTILRAYLLTGKLPWKNIMISGMVLDPDGKKMSKSKGNVVTPEELLEKYG 552 (800)
T ss_pred CCCCh-hhhhhcCCceEEEeecchhhhHHHHHHHHHHHhcCCCCcceEEEeeEEECCCCCCCCCCCCCCCCHHHHHHHcC
Confidence 99875 78999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHH
Q 002136 606 ADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVS 685 (961)
Q Consensus 606 aDalR~~L~~~~~~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~ 685 (961)
+|++||||+++.+++|++|+++.+.++++++++|||+++|+.. +.+... ......+...|+|+++
T Consensus 553 ~D~lR~~l~~~~~~~d~~fs~~~~~~~~~~l~kl~N~~r~~~~-~~~~~~--------------~~~~~~~~~~D~~il~ 617 (800)
T PRK13208 553 ADAVRYWAASARLGSDTPFDEKQVKIGRRLLTKLWNASRFVLH-FSADPE--------------PDKAEVLEPLDRWILA 617 (800)
T ss_pred ccHHHHHHhcCCCCCCceecHHHHHHHHHHHHHHHHHHHHHHh-cccccc--------------cCccccCCHHHHHHHH
Confidence 9999999994444999999999999999999999999999873 221100 0001234567999999
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhhHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhH
Q 002136 686 KLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVT 765 (961)
Q Consensus 686 ~l~~~~~~v~~a~e~~~f~~A~~~i~~f~~~~~~n~Yle~~K~~l~~~~~~~~~~~~~~~l~~vl~~~l~LL~Pf~P~it 765 (961)
+++.+++++.++|++|+|+.|++.+++|+++++||+||+.+|+|++.++..+.+.+++.+++.+++.+++||||||||+|
T Consensus 618 ~l~~~i~~v~~~~e~~~f~~A~~~i~~f~~~~~~n~Yie~~k~~~~~~~~~~~~~~~~~~l~~~l~~l~~LLaPf~P~ia 697 (800)
T PRK13208 618 KLAKVVEKATEALENYDFAKALEEIESFFWHVFCDDYLELVKSRAYGEDEEEEQKSARYTLYTVLDTLLRLLAPFLPFIT 697 (800)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHhhHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhcccchhhH
Confidence 99999999999999999999999999999888999999999999887533333667889999999999999999999999
Q ss_pred HHHHHHhcCCCCceeecCCCCCCC-CCChHHHHHHHHHHHHHHHHHhhhhhcccCCCceeeEEEE-cCHHHHHHHHhHHH
Q 002136 766 EELWQSLRKRKEALIVSPWPQTSL-PRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISASIV-ANEEVIQYISKEKE 843 (961)
Q Consensus 766 Eeiw~~L~~~~~si~~~~wP~~~~-~~d~~~~~~~~~~~~~v~~ir~~r~~~~i~~~~~~~~~i~-~~~~~~~~~~~~~~ 843 (961)
||||+.|+ .+||+.++||+.+. ..++.++..++.+++++..+|++|++++++++.++.+.++ .+.+ .+.++...+
T Consensus 698 Eelw~~L~--~~si~~~~wP~~~~~~~~~~~~~~~~~v~~ii~~iR~~r~~~~i~~~~~l~~~~~~~~~~-~~~~~~~~~ 774 (800)
T PRK13208 698 EEVWSWLY--GGSVHRASWPEPDEELIDEEDEELGELAKEILSAVRKYKSEAGLSLNAPLKKVEVYGPAD-LELLEAAEE 774 (800)
T ss_pred HHHHHhCC--CCceEeccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCccceEEEecchH-HHHHHHHHH
Confidence 99999998 35899999999874 5678899999999999999999999999999999887655 4555 777888888
Q ss_pred HHHHHcCCccccEEee
Q 002136 844 VLALLSRLDLLNVHFT 859 (961)
Q Consensus 844 ~i~~l~~~~~~~v~~~ 859 (961)
.|+.+.+++. +.+.
T Consensus 775 ~l~~~~~~~~--v~~~ 788 (800)
T PRK13208 775 DLKAAGNIEE--LELV 788 (800)
T ss_pred HHHHHhCcCe--EEEe
Confidence 8988887754 4444
No 13
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.4e-163 Score=1514.27 Aligned_cols=771 Identities=26% Similarity=0.425 Sum_probs=681.5
Q ss_pred CCCCCCh-hhHHHHHHHHHhCCCCCCCCC--CCCCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCC
Q 002136 59 LPKTFDF-TSEERIYNWWESQGYFKPNFE--RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (961)
Q Consensus 59 ~~~~~~~-~~E~~~~~~W~~~~~f~~~~~--~~~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G 135 (961)
+|+++|+ ++|++||++|+++++|++..+ .++++|+|++|||||||.||||||+|+|++|+++||+||+||+|+|+||
T Consensus 20 f~m~~~~~~~E~~~~~~W~~~~~y~~~~~~~~~~~~f~l~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G~~v~~~pG 99 (961)
T PRK13804 20 FPMRAGLPQKEPEIQARWEEIDLYKKLREQAKGRPKFVLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPG 99 (961)
T ss_pred CCCCCChHHhHHHHHHHHHHCCCccccccccCCCCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCcccCCCC
Confidence 4556887 789999999999999998653 4578899999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHH
Q 002136 136 TDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIR 215 (961)
Q Consensus 136 ~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~ 215 (961)
|||||||||.+|++.+..+|++++++++++|++.|++|+.++++.+++||++||+++||+|+|+||||.|.++++++|.+
T Consensus 100 wD~hGlPiE~~vek~~~~~~~~~~~~~~~~f~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~~~~~F~~ 179 (961)
T PRK13804 100 WDCHGLPIEWKIEEKYRAKGKNKDEVPVAEFRKECREYALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEARIAREFGK 179 (961)
T ss_pred cCCCCcHHHHHHHHhhhhcCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHH
Confidence 99999999999999887778888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCceEEcCeeeecCCCCCccccccccccccCCCeEEEEEEEecCC------CeeEEEEecCCCccCCCcEEEECCCC
Q 002136 216 LHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGR------SDFLTIATTRPETLFGDVALAVNPQD 289 (961)
Q Consensus 216 L~~~GlIy~~~~~v~w~p~~~t~lsd~Ev~~~e~~~~~~~~~~~~~~~------~~~l~v~TtrPeTl~g~~av~v~P~~ 289 (961)
|+++|||||+.+||+|||.|+|+|||+||+|++..+.++||+|++.++ +.+++|||||||||+||+||||||++
T Consensus 180 l~~kGliyr~~kpV~Wcp~~~TaLa~~Evey~~~~s~~~~v~F~~~~~~~~~~~~~~lviwTTtPwTl~an~aiav~p~~ 259 (961)
T PRK13804 180 FAAKGQLYRGSKPVMWSVVERTALAEAEIEYHDIESDTIWVKFPVKDGKGILDSGTYVVIWTTTPWTIPANRAISYSPDI 259 (961)
T ss_pred HHHCCCEEeCCcceecCCCCCCCccchhcccccccCceEEEEEEecCcccccCCCCeEEEEeCCchhhhhCeEEEECCCC
Confidence 999999999999999999999999999999999999999999999753 36899999999999999999999997
Q ss_pred c-------------------h-------------------hh--------hhccCeeeccCCCCC-----eeeeeecCcc
Q 002136 290 E-------------------H-------------------YS--------QFIGMMAIVPMTYGR-----HVPIISDKYV 318 (961)
Q Consensus 290 ~-------------------~-------------------y~--------~l~g~~~~~P~~~~~-----~ipii~~~~V 318 (961)
+ + |+ +|+|++|.|||. ++ .+|||+++||
T Consensus 260 ~Y~~v~~~~~~~~~~~~~~e~~iva~~~~~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~-~~~~~~~~~pvi~~~~V 338 (961)
T PRK13804 260 EYGLYEVTGAENDFWAKPGERLVVADALAESVAKKAGVESFERLADVKGEDLEKIVCAHPLD-GLDGYEFEVPVLDGDHV 338 (961)
T ss_pred ceEEEEeccccccccccCCcEEEeHHHHHHHHHHHhCCCCcEEEEEEEhhhccCCEEECCCC-CcccccceeEEEecCcc
Confidence 3 3 23 799999999995 67 8999999999
Q ss_pred ccCCCcceeEeCCCCChhHHHHHHHhCC-CceeecCCCCcccccccc--------cCCCchHHHHHHHHHHHHHcCCccc
Q 002136 319 DKEFGTGVLKISPGHDHNDYLLARKLGL-PILNVMNKDGTLNEVAGL--------FRGLDRFEARKKLWSDLEETGLAVK 389 (961)
Q Consensus 319 ~~~~GTG~v~~~Pah~~~D~~~~~~~~l-~~~~~~~~~G~~~~~~g~--------~~G~~~~~ar~~i~~~L~~~g~~~~ 389 (961)
++++|||+||+|||||++||+++++||| |+++++|++|+|++++|. |+|+.++|||+.|++.|++.|++++
T Consensus 339 ~~~~GTG~Vh~aPahg~~Dy~~~~~~~l~~~~~~vd~~G~~~~~~~~~~g~~v~~~~G~~~~ea~~~Ii~~L~~~g~l~~ 418 (961)
T PRK13804 339 TDDAGTGFVHTAPGHGREDFNVWMKYGRTEIPVTVDEDGFYTENAPGFGGARVIDDEGKKYGDANKAVIEKLIEAGLLLA 418 (961)
T ss_pred CCCCCCceEEeCCCCCHHHHHHHHHcCCCcccccCCCCeEEccCCCccccccccccCCcchhhhhHHHHHHHHhCCCccc
Confidence 9999999999999999999999999999 999999999999998887 8999999999999999999999999
Q ss_pred cccccccCCcccCCCCceeeeeccceeeeccH-------HHHHHHHHHHcCCceeechhHHHHHHHHHhcCCCceeeecc
Q 002136 390 KEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEP-------LAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQL 462 (961)
Q Consensus 390 ~~~~~~~~p~~~r~~~~v~~~~~~qwF~~~~~-------~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRq~ 462 (961)
.+++.|++|+|||||+||++++++|||+++++ ++++++++++ +++|+|++.++++.+||++++||||||||
T Consensus 419 ~~~~~h~yp~~wR~~~pii~r~t~QWFi~~~~~~~~~~~~k~~al~~i~--~v~~~P~~~~~r~~~~i~~~~DWcISRQR 496 (961)
T PRK13804 419 RGRLKHSYPHSWRSKKPVIFRNTPQWFISMDKDLGDGTTLRSRALDAID--KTRFVPAAGQNRLYNMIEDRPDWVISRQR 496 (961)
T ss_pred ccceecCCCccCCCCCeEEEeccccccEEcCCcccchHHHHHHHHHHHh--ccEEECHHHHHHHHHHHhcCccceeeeec
Confidence 99999999999999999999999999999998 9999999996 79999999999999999999999999999
Q ss_pred CCCcccceEEEcCCcccEEEecCh----HHHHHHH--------------HhhcCCCcccccCCCceeeeecCCCcccccc
Q 002136 463 WWGHRIPVWYIVGKEEEYIVARNA----DEALEKA--------------HQKYGKNVEIYQDPDVLDTWFSSALWPFSTL 524 (961)
Q Consensus 463 ~WG~pIP~~~~~~~~~~~~~~~~~----~~~~~~~--------------~~~~~~~~~~~~~~dvldtWf~S~l~~~~~~ 524 (961)
+||||||+|||+ ++..++.... .+..... .+.++++..++|++||||||||||++++..+
T Consensus 497 ~WG~PIP~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~r~~DvlDvWFdSg~s~~~~~ 574 (961)
T PRK13804 497 AWGVPIPIFVAE--DGEILMDEEVNARIADAFEEEGADAWFAEGAKERFLGGFHPNGEFTKVTDILDVWFDSGSTHAFVL 574 (961)
T ss_pred cCCceeeEEEcC--CCCEeccHHHHHHHHHHHHhcCCccccccCHHHhcCcccCcccceEecCcceeeeecCCCCccccc
Confidence 999999999995 3333322211 1111110 0011123468999999999999998776554
Q ss_pred CCCCCChhHHhhcCCcceEeeeccccccHHHHHHHHHhHhcCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhhc
Q 002136 525 GWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEF 604 (961)
Q Consensus 525 ~~p~~~~~~~~~~~P~d~~~~G~Dil~fw~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~y 604 (961)
++. .+| .||+|++++|+||+|||++++++++..++|..||++|++|||++|.+|+|||||+||||+|.++|++|
T Consensus 575 ~~~----~~~--~~PaD~~~eG~Di~rgWF~s~ll~s~~~~~~~P~k~V~~HG~vld~~G~KMSKSlGNvIdP~~ii~~y 648 (961)
T PRK13804 575 EDR----PDL--KWPADLYLEGSDQHRGWFNSSLLESCGTRGRAPYKAVLTHGFTLDEKGEKMSKSLGNTVSPQDVIKQS 648 (961)
T ss_pred cCC----ccc--CCCceEEEEEcccccHHHHHHHHHHHHhcCCCChhhEEEeccEECCCCCCccCCCCCcCCHHHHHHhc
Confidence 321 334 58999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHhCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHH
Q 002136 605 GADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVV 684 (961)
Q Consensus 605 GaDalR~~L~~~~~~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il 684 (961)
|||++|||++++.+++|++|+++.+...++++++|||++||+++++.++.+... ......+...|+|++
T Consensus 649 GaD~lRl~lls~~~~~D~~fs~~~l~~~~~~~~kL~N~~rf~l~nl~~~~~~~~-----------~~~~~~~~~~D~wil 717 (961)
T PRK13804 649 GADILRLWVASVDYSDDQRIGKEILKQVSETYRKLRNTLRWLLGNLAHFDPGED-----------VVAYADLPELERYML 717 (961)
T ss_pred CHHHHHHHHHhCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhccccCCcccc-----------cCChhhcCHHHHHHH
Confidence 999999999986559999999999999999999999999999998876543100 001123466799999
Q ss_pred HHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhhHHHHHHhhhhhccCC-ChHHHHHHHHHHHHHHHHHHHHhCCCchh
Q 002136 685 SKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSE-YDSDAIIAQAVLLYIFENILKLLHPFMPF 763 (961)
Q Consensus 685 ~~l~~~~~~v~~a~e~~~f~~A~~~i~~f~~~~~~n~Yle~~K~~l~~~~-~~~~~~~~~~~l~~vl~~~l~LL~Pf~P~ 763 (961)
++++.+++.++++|++|+|++|++++++|+++++||+|++.+|+|++++. +...+++++.+|+.+++.+++||+|||||
T Consensus 718 ~~l~~~~~~v~~~~e~y~f~~a~~~l~~f~~~~lsn~Yle~~K~rl~~~~~~~~~r~~~~~vL~~il~~l~~lLaPi~P~ 797 (961)
T PRK13804 718 HRLNELDGLVREAYDAYDFKRIYKALVNFVNVDLSAFYFDIRKDALYCDAPSSLRRRAAQTVFYEIFVRLTKWLAPILPF 797 (961)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999989999999999999999763 33456788999999999999999999999
Q ss_pred hHHHHHHHhcC-CCCceeecCCCCCCC-CCChHHHHHHHHHHH---H-HHHHHhhhhhcccCCCceeeEEEE-cCHHHHH
Q 002136 764 VTEELWQSLRK-RKEALIVSPWPQTSL-PRHMSAIKRFENLQS---L-TRAIRNARAEYSVEPAKRISASIV-ANEEVIQ 836 (961)
Q Consensus 764 itEeiw~~L~~-~~~si~~~~wP~~~~-~~d~~~~~~~~~~~~---~-v~~ir~~r~~~~i~~~~~~~~~i~-~~~~~~~ 836 (961)
+|||||++|++ ..+||+++.||+.+. +.|+++++.++.++. + ..++|++|++.+|+++..+.+.+. .+.+..+
T Consensus 798 ~aEeiw~~L~~~~~~sv~l~~wP~~~~~~~d~~~~~~~~~~~~~r~~v~~~le~~R~~~~i~~~~e~~v~l~~~~~~~~~ 877 (961)
T PRK13804 798 TAEEAWLYRYPEEEVSVHLEQFPETPAFWRDDALAEKWRKFRAVRDVVTGALEEERAAKRIGSSLEAAPTVYIADPELLA 877 (961)
T ss_pred hHHHHHHhcccCCCCceEecCCCCCcchhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcceeEEEEcCCHHHHH
Confidence 99999999984 346999999999874 667888777666555 4 478999999999998888888876 4434445
Q ss_pred HHHhHHHHHHHHcCCcc
Q 002136 837 YISKEKEVLALLSRLDL 853 (961)
Q Consensus 837 ~~~~~~~~i~~l~~~~~ 853 (961)
.+... .|..|..++.
T Consensus 878 ~l~~~--~l~~~~~vs~ 892 (961)
T PRK13804 878 ALEGL--DFAEICITSQ 892 (961)
T ss_pred HHHHH--HHHHHhhhCc
Confidence 55544 2565655543
No 14
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=8.6e-164 Score=1516.26 Aligned_cols=767 Identities=30% Similarity=0.509 Sum_probs=683.8
Q ss_pred CCCCCCh-hhHHHHHHHHHhCCCCCCCCC--CCCCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCC
Q 002136 59 LPKTFDF-TSEERIYNWWESQGYFKPNFE--RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (961)
Q Consensus 59 ~~~~~~~-~~E~~~~~~W~~~~~f~~~~~--~~~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G 135 (961)
+|..+|+ .+|++||++|+++++|++..+ .++++|+|++||||+||.||||||+|++++|+++||+||+||+|+|+||
T Consensus 15 f~m~~~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G 94 (912)
T PRK05743 15 FPMRANLPKREPEILKRWEENDLYQKIREANKGKPKFILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPG 94 (912)
T ss_pred CCCCCChHHhhHHHHHHHHHCCCccccchhcCCCCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCC
Confidence 4556888 889999999999999997532 4578899999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHH
Q 002136 136 TDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIR 215 (961)
Q Consensus 136 ~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~ 215 (961)
|||||+|||.++++.+ |++..++++++|++.|++|++++++.+++||++||+++||+++|+|+||.|.++|+++|.+
T Consensus 95 ~D~~Glpie~~~ek~l---~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~~v~~~f~~ 171 (912)
T PRK05743 95 WDCHGLPIELKVEKKL---GKKGKKLSAAEFRKKCREYALEQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANIIRALGK 171 (912)
T ss_pred cCCCccHhHHHHHHHc---CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCcCCCCHHHHHHHHHHHHH
Confidence 9999999999998865 5667889999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCceEEcCeeeecCCCCCccccccccccccCCCeEEEEEEEecCC-------CeeEEEEecCCCccCCCcEEEECCC
Q 002136 216 LHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGR-------SDFLTIATTRPETLFGDVALAVNPQ 288 (961)
Q Consensus 216 L~~~GlIy~~~~~v~w~p~~~t~lsd~Ev~~~e~~~~~~~~~~~~~~~-------~~~l~v~TtrPeTl~g~~av~v~P~ 288 (961)
|+++|+|||+.++|+|||.|+|+|||+||+|++..+.++||+|++.++ +.+++|||||||||+||+||||||+
T Consensus 172 l~~~Gliy~~~~~v~w~p~~~TaLad~Evey~~~~s~~~yv~f~l~~~~~~~~~~~~~l~i~TTrP~Tl~~n~aiav~p~ 251 (912)
T PRK05743 172 MAKKGYLYKGLKPVYWCPDCGSALAEAEVEYHDKTSPSIYVAFPVVDGKLAAAFKDASLVIWTTTPWTLPANQAIAVHPE 251 (912)
T ss_pred HHHCCCEEecceeEecCCCcCCCchhhHhhcccccCceEEEEEEecCcchhcccCCCEEEEEeCCChhhhhCeEEEECCC
Confidence 999999999999999999999999999999999999999999999763 3789999999999999999999999
Q ss_pred Cc---------hh---------------------------hhhccCeeeccCCCCCeeeeeecCccccCCCcceeEeCCC
Q 002136 289 DE---------HY---------------------------SQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPG 332 (961)
Q Consensus 289 ~~---------~y---------------------------~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~v~~~Pa 332 (961)
++ +| ++|+|++|.||+. ++.+|||+++||++++|||+||+|||
T Consensus 252 ~~Y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~Pl~-~~~~pvi~~~~V~~~~GTG~Vh~aPa 330 (912)
T PRK05743 252 FDYVLVEVEGEKLIVAKDLVESVLERFGWEDYEVLATFKGKELEGLVAQHPFY-DRDSPVILGDHVTLDAGTGLVHTAPG 330 (912)
T ss_pred CeeEEEEcCCCEEEEeHHhHHHHHHhhCCcceEEEEEechHhhcCCEEECCCC-CCeeeEeCCCccCCCCCcCeEEeCCC
Confidence 94 66 4799999999994 88999999999999999999999999
Q ss_pred CChhHHHHHHHhCCCceeecCCCCcccccccccCCCchHHHHHHHHHHHHHcCCccccccccccCCcccCCCCceeeeec
Q 002136 333 HDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVS 412 (961)
Q Consensus 333 h~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~ 412 (961)
||++||++|++||||+++++|++|+|++.+|+|.|++++|||++|++.|++.|++++.+++.|++|+|||||+||+++++
T Consensus 331 hg~~Dy~~~~~~~L~~~~~vd~~G~~~~~~~~~~Gl~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~~ 410 (912)
T PRK05743 331 HGEDDYVVGQKYGLEVLNPVDDDGRYTEEAPLFAGLFVFKANPKIIEKLEEKGALLKEEKITHSYPHCWRTKKPVIFRAT 410 (912)
T ss_pred CCHHHHHHHHHcCCCcccccCCCceEecCCcccCCcCHHHhHHHHHHHHHhCCCeeeeeeeeccCCeecCCCCEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeccH--HHHHHHHHHHcCCceeechhHHHHHHHHHhcCCCceeeeccCCCcccceEEEcCCcccEEEecChHHHH
Q 002136 413 KQWFVTMEP--LAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEAL 490 (961)
Q Consensus 413 ~qwF~~~~~--~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~ 490 (961)
+|||+++++ ++++++++++ +++|+|++.++++.+||++++||||||||+||||||+|+|+. ++..++..+.....
T Consensus 411 ~QWFi~~~~~~~k~~~l~~~~--~v~~~P~~~~~r~~~~i~~~~DWcISRQR~WG~PIP~~~~~~-~g~~~~~~~~~~~i 487 (912)
T PRK05743 411 PQWFISMDKKGLREQALKAIE--KVKWIPAWGKNRIESMVENRPDWCISRQRTWGVPIPIFYHKE-TGELHPTPELIEHV 487 (912)
T ss_pred CcccEeCChHHHHHHHHHHHc--ccEEEChHHHHHHHHHHhcCcCccccccceeCceEEEEEECC-CCcEeecHHHHHHH
Confidence 999999998 9999999996 599999999999999999999999999999999999999964 44444422211111
Q ss_pred HHHHhh--------------cC-CCcccccCCCceeeeecCCCccccccCCCCCChhHHhhcCCcceEeeeccccccHHH
Q 002136 491 EKAHQK--------------YG-KNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVA 555 (961)
Q Consensus 491 ~~~~~~--------------~~-~~~~~~~~~dvldtWf~S~l~~~~~~~~p~~~~~~~~~~~P~d~~~~G~Dil~fw~~ 555 (961)
....+. ++ .+..+.|++||||||||||+++++.+++- . +++||+|++++|+||+|||++
T Consensus 488 ~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~~~DvlDvWfdSg~s~~~~~~~~----~--~~~~P~Dl~~~G~Di~r~Wf~ 561 (912)
T PRK05743 488 AKLFEKEGIDAWFELDAKELLPDEADEYEKETDILDVWFDSGSSHAAVLEQR----P--ELGYPADLYLEGSDQHRGWFQ 561 (912)
T ss_pred HHHHHhhCCccccccCHHHhcCCcccCEEECCchhhhhhhhCCCHHHHhcCc----c--ccCCCceEEEecccccchHHH
Confidence 110000 11 12458899999999999999999887751 1 268999999999999999999
Q ss_pred HHHHHHhHhcCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHhCCCCCccccCHHHHHHHHHH
Q 002136 556 RMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAF 635 (961)
Q Consensus 556 ~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~~~~~D~~f~~~~~~~~~~~ 635 (961)
++++.+..+.|..||++|++||||+|.+|+|||||+||||+|.++|++||||+||||++++++++|++|+.+.+.+.+++
T Consensus 562 ~~l~~~~~~~g~~P~k~vl~HG~vld~~G~KMSKSlGNvIdP~~ii~~yGaDalR~~ll~~~~~~D~~~s~~~l~~~~~~ 641 (912)
T PRK05743 562 SSLLTSVATRGKAPYKQVLTHGFTVDGKGRKMSKSLGNVIDPQDVIKKYGADILRLWVASTDYSGDVRISDEILKQVAEA 641 (912)
T ss_pred HHHHHHHHhcCCCccceeEEeeeEECCCCCCCCCCCCCcCCHHHHHHhcChHHHHHHHHhcCCCCCeeecHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999855599999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHH
Q 002136 636 TNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFW 715 (961)
Q Consensus 636 ~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~i~~f~~ 715 (961)
+++|||++||+++++.++.+... ..+...+...|+|++++++.++++++++|++|+|+.|++.+++|++
T Consensus 642 ~~kl~N~~rf~~~nl~~~~~~~~-----------~~~~~~l~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~l~~f~~ 710 (912)
T PRK05743 642 YRRIRNTLRFLLGNLNDFDPAKD-----------AVPYEELLELDRWALHRLAELQEEILEAYENYDFHKVYQKLHNFCS 710 (912)
T ss_pred HHHHHHHHHHHHhCccCCCcccc-----------cCCchhCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhh
Confidence 99999999999998765432000 0001234668999999999999999999999999999999999999
Q ss_pred HhhhHHHHHHhhhhhccCC-ChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhc-CCCCceeecCCCCCCC-CCC
Q 002136 716 SDFADWYIEASKARLYRSE-YDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLR-KRKEALIVSPWPQTSL-PRH 792 (961)
Q Consensus 716 ~~~~n~Yle~~K~~l~~~~-~~~~~~~~~~~l~~vl~~~l~LL~Pf~P~itEeiw~~L~-~~~~si~~~~wP~~~~-~~d 792 (961)
+++||+|++.+|+|+|+.. +...+++++.+|+.+++.+++||+|||||+|||||+.|+ ...+||+++.||+.+. +.|
T Consensus 711 ~~ls~~Yie~~K~rly~~~~~~~~r~~~~~vL~~~l~~l~~lLaPi~P~~aEelw~~l~~~~~~sv~~~~wP~~~~~~~~ 790 (912)
T PRK05743 711 VDLSAFYLDIIKDRLYTDAADSLARRSAQTALYHILEALVRWLAPILSFTAEEIWQYLPGEREESVFLEEWPEVPELADD 790 (912)
T ss_pred hhhceeeheeccHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcccCCCCceEEecCCCCccccCC
Confidence 9999999999999998753 233567788999999999999999999999999999996 3456999999999874 668
Q ss_pred hHHHHHHHHHH----HHHHHHHhhhhhcccCCCceeeEEEEcCHHHHHHHHhHHHHHHHHcCCc
Q 002136 793 MSAIKRFENLQ----SLTRAIRNARAEYSVEPAKRISASIVANEEVIQYISKEKEVLALLSRLD 852 (961)
Q Consensus 793 ~~~~~~~~~~~----~~v~~ir~~r~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~i~~l~~~~ 852 (961)
+.+++.++.++ ++++.+|..|++..|+++..+.+++..++ +.+....+.|..|..++
T Consensus 791 ~~~~~~~~~~~~~r~~v~~~i~~~r~~~~i~~~~~~~~~~~~~~---~~l~~~~~~l~~~~~vs 851 (912)
T PRK05743 791 EELLAKWEELLEVRDEVNKALEEARKEKVIGSSLEAEVTLYADA---ALLESLGDELRFLLIVS 851 (912)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceEEEEEcCH---HHHHHHHHHHHHHhhhC
Confidence 88888899888 58999999999999998878887776443 34444444566565554
No 15
>PLN02843 isoleucyl-tRNA synthetase
Probab=100.00 E-value=3.8e-162 Score=1502.68 Aligned_cols=767 Identities=27% Similarity=0.454 Sum_probs=671.8
Q ss_pred CCh-hhHHHHHHHHHhCCCCCCCCC-CCCCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCC
Q 002136 63 FDF-TSEERIYNWWESQGYFKPNFE-RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAG 140 (961)
Q Consensus 63 ~~~-~~E~~~~~~W~~~~~f~~~~~-~~~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~G 140 (961)
-++ .+|++||++|+++++|++..+ ..+++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+|||||||
T Consensus 3 ~~~~~~E~~~~~~W~~~~~y~~~~~~~~~~~f~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hG 82 (974)
T PLN02843 3 ANSVTREPEIQKLWEENQVYKRVSDRNNGESFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHG 82 (974)
T ss_pred CChHHhhHHHHHHHHHCCCccccccccCCCCEEEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCC
Confidence 355 789999999999999998654 245779999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcC
Q 002136 141 IATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKG 220 (961)
Q Consensus 141 l~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~G 220 (961)
||||.++++.+.. .++.++++++|+++|++|++++++.|++||++||++.||+++|+||||.|.++|+++|.+|+++|
T Consensus 83 lpie~~vek~l~~--~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~~f~~l~~~G 160 (974)
T PLN02843 83 LPIELKVLQSLDQ--EARKELTPIKLRAKAAKFAKKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLNG 160 (974)
T ss_pred cHHHHHHHHHhch--hhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHHHHHHHHHHCC
Confidence 9999999887632 25678899999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEcCeeeecCCCCCcccccccccccc-CCCeEEEEEEEecCCC-------------eeEEEEecCCCccCCCcEEEEC
Q 002136 221 LIYQGSYMVNWSPNLQTAVSDLEVEYSE-EPGTLYYIKYRVAGRS-------------DFLTIATTRPETLFGDVALAVN 286 (961)
Q Consensus 221 lIy~~~~~v~w~p~~~t~lsd~Ev~~~e-~~~~~~~~~~~~~~~~-------------~~l~v~TtrPeTl~g~~av~v~ 286 (961)
+|||+.+||+|||.|+|+|||+||+|++ ..++++||+|++.++. .+++|||||||||+||+|||||
T Consensus 161 lIyr~~kpV~Wcp~~~Talae~Evey~e~~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~lviwTTtPwTlpan~AiaVn 240 (974)
T PLN02843 161 YIYRGRKPVHWSPSSRTALAEAELEYPEGHVSKSIYVAFPVVSPSETSPEELEEFLPGLSLAIWTTTPWTMPANAAVAVN 240 (974)
T ss_pred CEEecceeeeecCCCCCcchHhHhcccCCccCceEEEEEEecCCccccccccccccccceEEEEeCcchhhccCcEEEEC
Confidence 9999999999999999999999999997 5799999999997541 4899999999999999999999
Q ss_pred CCCc-------------h-----------------------------------------------hhhhccCeeeccCCC
Q 002136 287 PQDE-------------H-----------------------------------------------YSQFIGMMAIVPMTY 306 (961)
Q Consensus 287 P~~~-------------~-----------------------------------------------y~~l~g~~~~~P~~~ 306 (961)
|+++ | +++|+|++|.||| .
T Consensus 241 P~~~Y~~v~~~~~~~d~r~~~~~~~~~~~~~~~~~~~~~~iva~~l~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~-~ 319 (974)
T PLN02843 241 DKLQYSVVEVQSFSEDESTSGGNKKKRPGNVLKEQQKLFLIVATDLVPALEAKWGVKLVVLKTFPGSDLEGCRYIHPL-Y 319 (974)
T ss_pred CCCceEEEEeccccccccccccccccccccccccccCceEEeHHHHHHHHHHhhCCceEEEeeechHHcCCCEEECCC-C
Confidence 9955 1 2689999999999 4
Q ss_pred CCeeeee-ecCccccCCCcceeEeCCCCChhHHHHHHHhCCCceeecCCCCcccccccccCCCchH-HHHHHHHHHHHHc
Q 002136 307 GRHVPII-SDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRF-EARKKLWSDLEET 384 (961)
Q Consensus 307 ~~~ipii-~~~~V~~~~GTG~v~~~Pah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~-~ar~~i~~~L~~~ 384 (961)
++.+||+ +++||++++|||+||+|||||++||+++++||||+++++|++|+|++++|.|+|+.++ +||++|++.|++.
T Consensus 320 ~~~~pii~~~~~V~~~~GTG~Vh~aPaHg~~Dy~~~~~~~l~~~~~vd~~G~~~~~~~~~~G~~v~~~a~~~Ii~~L~~~ 399 (974)
T PLN02843 320 NRESPVVIGGDYITTESGTGLVHTAPGHGQEDYITGLKYGLPLLSPVDDAGKFTEEAGQFSGLSVLGEGNAAVVEALDEA 399 (974)
T ss_pred CCceeEEecCCccCCCCCCCeEEeCCCCCHHHHHHHHHcCCCcccccCCCceEccCCcccCCcEehhcchHHHHHHHHHC
Confidence 7899997 5899999999999999999999999999999999999999999999999999999998 9999999999999
Q ss_pred CCccccccccccCCcccCCCCceeeeeccceeeeccHHHHHHHHHHHcCCceeechhHHHHHHHHHhcCCCceeeeccCC
Q 002136 385 GLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWW 464 (961)
Q Consensus 385 g~~~~~~~~~~~~p~~~r~~~~v~~~~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRq~~W 464 (961)
|++++.+++.|+|||||||++||++|+++|||+++++++++++++++ +++|+|+..++++.+||++++||||||||+|
T Consensus 400 g~l~~~e~~~H~yp~cwR~~~pvi~r~t~QWFi~~~~~k~~al~~~~--~v~~~P~~~~~r~~~~i~~~~DWcISRQr~W 477 (974)
T PLN02843 400 GSLLMEEAYGHKYPYDWRTKKPTIFRATEQWFASVEGFRQAALDAID--KVKWIPAQGENRIRAMVSGRSDWCISRQRTW 477 (974)
T ss_pred CCeeeeeeecCCCCccCCCCCeEEEEecCceeEeCHHHHHHHHHHHh--ccEEEChHHHHHHHHHHhcCcceeeeecccc
Confidence 99999999999999999999999999999999999999999999996 6999999999999999999999999999999
Q ss_pred CcccceEEEcCCcccEEEec-ChHHHH---HHH--------------Hhhc-CCCcccccCCCceeeeecCCCccccccC
Q 002136 465 GHRIPVWYIVGKEEEYIVAR-NADEAL---EKA--------------HQKY-GKNVEIYQDPDVLDTWFSSALWPFSTLG 525 (961)
Q Consensus 465 G~pIP~~~~~~~~~~~~~~~-~~~~~~---~~~--------------~~~~-~~~~~~~~~~dvldtWf~S~l~~~~~~~ 525 (961)
|||||+|+|.. ++..++.. ...+.. ... ++.+ ++...+.|++||||||||||+++.+.++
T Consensus 478 G~pIP~~~~~~-~~~~~~~~~~i~~~~~~~~~~g~~~w~~~~~~~l~p~~~~~~~~~~~k~~DvlDvWFdSg~~~~~~~~ 556 (974)
T PLN02843 478 GVPIPVFYHVE-TKEPLMNEETIAHVKSIVAQKGSDAWWYMDVEDLLPEKYRDKASDYEKGTDTMDVWFDSGSSWAGVLG 556 (974)
T ss_pred ccEEEEEEEcC-CCCEeechhhHHHHHHHHHhhCCcccccCCHHHhCcccccCchhhhEecccccccchhcCCChHHHhc
Confidence 99999999954 34433322 221111 110 0011 1133588999999999999997766554
Q ss_pred CCCCChhHHhhcCCcceEeeeccccccHHHHHHHHHhHhcCCCCceEEEEeceEEcCCCccccccCCCccCchhhhh---
Q 002136 526 WPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIK--- 602 (961)
Q Consensus 526 ~p~~~~~~~~~~~P~d~~~~G~Dil~fw~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~--- 602 (961)
+. .+.+||+|++++|+||+|||+++|++.+..+.|+.||++|++||+++|.+|+|||||+||||+|.++|+
T Consensus 557 ~~------~~~~~PaDl~~eG~Di~rgWf~s~l~~~~~~~g~~Pfk~v~~HG~vld~~G~KMSKSlGNvI~p~~vi~~~~ 630 (974)
T PLN02843 557 SR------EGLSYPADLYLEGSDQHRGWFQSSLLTSVATKGKAPYKSVLTHGFVLDEKGFKMSKSLGNVVDPRLVIEGGK 630 (974)
T ss_pred cc------cccCCCceeeeeeccccchHHHHHHHHHHHhcCCCccceEEEeccEECCCCCCcCCCCCCcCCHHHHHhhcc
Confidence 31 234799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ------hcChhHHHHHHHhCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhHHHHHhhccchhhhhcCC
Q 002136 603 ------EFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKA 676 (961)
Q Consensus 603 ------~yGaDalR~~L~~~~~~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (961)
+||+|+||||+++..+++|++|+.+.+...+++++||||+++|+++|+.++.+ .. ......+
T Consensus 631 ~~~~~~~yGaD~lR~~l~~~~~~~d~~~s~~~l~~~~~~~~kl~n~~rf~lgnl~~~~~-~~-----------~~~~~~~ 698 (974)
T PLN02843 631 NQKQEPAYGADVLRLWVASVDYTGDVLIGPQILKQMSDIYRKLRGTLRYLLGNLHDWKP-DN-----------AVPYEDL 698 (974)
T ss_pred ccccccccChHHHHHHHHhcccCCCceeCHHHHHHHHHHHHHHHHHHHHHHhCccCCCc-cc-----------ccCcccc
Confidence 89999999999987778899999999999999999999999999999876542 00 0011234
Q ss_pred CchhHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhhHHHHHHhhhhhccCC-ChHHHHHHHHHHHHHHHHHHH
Q 002136 677 PLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSE-YDSDAIIAQAVLLYIFENILK 755 (961)
Q Consensus 677 ~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~i~~f~~~~~~n~Yle~~K~~l~~~~-~~~~~~~~~~~l~~vl~~~l~ 755 (961)
...|+|++++++.++++++++|++|+|+.|++.+++|++.++||+||+.+|+|++++. +...+++++.+|+.+++.+++
T Consensus 699 ~~~D~wiLskL~~li~~v~~aye~y~f~~A~~~i~~f~~~dlsn~Yie~~Kprly~~~~~~~~r~~~qtvL~~iLe~l~~ 778 (974)
T PLN02843 699 PSIDKYALFQLENVVNEIEESYDNYQFFKIFQILQRFTIVDLSNFYLDVAKDRLYVGGTTSFTRRSCQTVLAAHLLSLLR 778 (974)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhHHHHHhcchhhhccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5679999999999999999999999999999999999999999999999999998763 334567888999999999999
Q ss_pred HhCCCchhhHHHHHHHhcCC-----CCceeecCCCCCCC-CCC--hHHHH----HHHHHHHHHHHHHhhhhhcccCCCce
Q 002136 756 LLHPFMPFVTEELWQSLRKR-----KEALIVSPWPQTSL-PRH--MSAIK----RFENLQSLTRAIRNARAEYSVEPAKR 823 (961)
Q Consensus 756 LL~Pf~P~itEeiw~~L~~~-----~~si~~~~wP~~~~-~~d--~~~~~----~~~~~~~~v~~ir~~r~~~~i~~~~~ 823 (961)
||+|||||+|||||++|+.. .+||+++.||+.+. +.+ +..+. .++...++++++|++|++.+|+++..
T Consensus 779 LLaPimPf~aEEiw~~L~~~~~~~~~~sv~~~~~P~~~~~~~~~~~~~~~~~~~~~~~r~~v~~~l~~~r~~~~i~~~~~ 858 (974)
T PLN02843 779 AIAPILPHLAEDAWQNLPFQEDGSAAESVFEAGWPTPNEEWLSFPAEDVDFWSLLLEVRDEVNKVLESARNGKLIGASLE 858 (974)
T ss_pred HHhhhhhHHHHHHHHhccccccCCCCCceEecCCCCCchhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc
Confidence 99999999999999999742 36999999999874 433 33333 33455568899999999999998888
Q ss_pred eeEEEE-cCHHHHHHHHh------HHHHHHHHcCCcc
Q 002136 824 ISASIV-ANEEVIQYISK------EKEVLALLSRLDL 853 (961)
Q Consensus 824 ~~~~i~-~~~~~~~~~~~------~~~~i~~l~~~~~ 853 (961)
+.+++. .+.+..+.++. ....|+.|..++.
T Consensus 859 ~~v~l~~~~~~~~~~l~~~~~~~~~~~~l~~l~~vs~ 895 (974)
T PLN02843 859 AKVYLHASDASLAARLAELCGASNGADELRRIFITSQ 895 (974)
T ss_pred eeEEEEeCCHHHHHHHHhhccccchHHHHHHHhccCc
Confidence 888776 34444455555 2355777766643
No 16
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-162 Score=1444.44 Aligned_cols=753 Identities=32% Similarity=0.548 Sum_probs=674.9
Q ss_pred CCCCCCCh-hhHHHHHHHHHhCCCCCCCCC---CCCCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeec
Q 002136 58 TLPKTFDF-TSEERIYNWWESQGYFKPNFE---RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWL 133 (961)
Q Consensus 58 ~~~~~~~~-~~E~~~~~~W~~~~~f~~~~~---~~~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~ 133 (961)
.+|.++|+ +.|++++++|+++++|++..+ ++++.|++++||||+||.+|||||+|.+++||+.||+.|+||+|.++
T Consensus 13 ~fpmr~~l~~~E~~i~~~W~e~~iy~k~~~~~~~g~~~FvfhDGPPyANG~iHiGHalnKilKDiI~Ry~~m~G~~v~~~ 92 (933)
T COG0060 13 DFPMRANLPKKEPKILKFWEENDIYEKIREERNKGKPKFVLHDGPPYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYV 92 (933)
T ss_pred CCCccCChhhcCHHHHHHHHHhhHHHHHHHHHhCCCCcEEEeCCCCCCCCCcchhhhHHHhhhhhhhhhhcccCCcCCCC
Confidence 46778998 889999999999999997663 56889999999999999999999999999999999999999999999
Q ss_pred CCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHH
Q 002136 134 PGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAF 213 (961)
Q Consensus 134 ~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F 213 (961)
|||||||||||.+||+.+...+....+++.++|.+.|++++.++.+.++++|+|||++.||+++|.|||+.|.+.++++|
T Consensus 93 pGWDcHGLPIE~~vek~lg~~k~~i~~~~~~efr~~Cr~~a~~~v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~~f 172 (933)
T COG0060 93 PGWDCHGLPIELKVEKKLGIGKKDIESFGVEEFREKCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWAF 172 (933)
T ss_pred CCCcCCCchHHHHHHHHhCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHhheEeeccCCCeecCCHHHHHHHHHHH
Confidence 99999999999999998855445567899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCceEEcCeeeecCCCCCccccccccccccCCCeEEEEEEEecC----CCeeEEEEecCCCccCCCcEEEECCCC
Q 002136 214 IRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAG----RSDFLTIATTRPETLFGDVALAVNPQD 289 (961)
Q Consensus 214 ~~L~~~GlIy~~~~~v~w~p~~~t~lsd~Ev~~~e~~~~~~~~~~~~~~----~~~~l~v~TtrPeTl~g~~av~v~P~~ 289 (961)
.+|+++||||||.++|+|||+|+|+||++||+|.+..++++||+|++.+ .+.+++||||||||||+|.||||||+-
T Consensus 173 ~~~~~kGllyrg~Kpv~wsp~c~TaLAeaEvey~d~~dpSIyV~F~v~~~~~~~~~~lviWTTTPWTLPaN~aiav~pd~ 252 (933)
T COG0060 173 KELYEKGLLYRGYKPVPWSPRCETALAEAEVEYGDVKDPSIYVKFPVKDEGLDENAYLVIWTTTPWTLPANLAIAVHPDL 252 (933)
T ss_pred HHHHHCCCeecCCeeeeecCCCCcchhhhhhcccccCCceEEEEEEeccCCCCCCcEEEEEeCCCCCchhcceeEeCCCc
Confidence 9999999999999999999999999999999999999999999999975 468999999999999999999999996
Q ss_pred ch---------h---------------------------hhhccCeeeccCCC---CCeeeeeecCccccCCCcceeEeC
Q 002136 290 EH---------Y---------------------------SQFIGMMAIVPMTY---GRHVPIISDKYVDKEFGTGVLKIS 330 (961)
Q Consensus 290 ~~---------y---------------------------~~l~g~~~~~P~~~---~~~ipii~~~~V~~~~GTG~v~~~ 330 (961)
++ | ++|.|.+|.|||.. .+..||+.++||+.+.|||+||++
T Consensus 253 ~Y~lv~~~~~~~IlA~~lve~~~~~~~~~~~~vl~~~kG~~Leg~~y~hPf~~~~~~~~~~v~~gd~VT~d~GTG~VHtA 332 (933)
T COG0060 253 DYVLVEVNGEKLILAKALVESVAKKAGVEDYEVLETFKGSELEGLRYEHPFYDFVYDRAFPVILGDHVTLDDGTGLVHTA 332 (933)
T ss_pred ceEEEEECCEEEEEhHHHHHHHHHHcCCcceEEeEEeehhhhCCCEeeCCcccccccceeeEEecCeEecCCCccceecC
Confidence 52 1 36889999999954 589999999999999999999999
Q ss_pred CCCChhHHHHHHHhC-CCceeecCCCCcccccccccCCCchHHHHHHHHHHHHHcCCccccccccccCCcccCCCCceee
Q 002136 331 PGHDHNDYLLARKLG-LPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEP 409 (961)
Q Consensus 331 Pah~~~D~~~~~~~~-l~~~~~~~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~ 409 (961)
||||++||++|+++| ||+++++|++|+++++.+.|.|+.++||++.|++.|+++|++++.+.+.|+|||||||++||++
T Consensus 333 PghGeeDy~vg~~~g~l~v~~pVD~~G~yt~~~~~~~G~~v~dAn~~Ii~~Lk~~g~Ll~~e~i~HsYPhcWR~ktPlIy 412 (933)
T COG0060 333 PGHGEEDYEVGKKYGLLEVLNPVDDNGRYTEEAPKYEGLFVKDANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTKTPLIY 412 (933)
T ss_pred CCCCHHHHHHHHHcCCcCCccccCCCccccccchhhCCceeccCCHHHHHHHHhCCceeeeeeEEeCCCcccCCCCeeEE
Confidence 999999999999999 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccceeeeccHHHHHHHHHHHcCCceeechhHHHHHHHHHhcCCCceeeeccCCCcccceEEEcCCcccEEEecChHHH
Q 002136 410 LVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEA 489 (961)
Q Consensus 410 ~~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~ 489 (961)
|.++|||++++++++++++.++ +++|+|++.++++.+||++.+||||||||+||+|||+|+|+. ++...+. ..|.
T Consensus 413 RAt~QWFi~v~~~r~~~l~~i~--~v~w~P~~~~~R~~~mve~r~DW~ISRQR~WGvPiPi~~~~~-~g~~~~~--~~El 487 (933)
T COG0060 413 RATPQWFVSVDKLRDKMLKEIN--KVNWVPDWGKNRFGNMVENRPDWCISRQRYWGVPIPVWYCKE-TGEILVI--TEEL 487 (933)
T ss_pred eecchheeEHHHHHHHHHHHHh--cceEEChhHHHHHHHHHcCCCcceeeccccCCCceeEEEECC-CCCeecc--HHHH
Confidence 9999999999999999999886 799999999999999999999999999999999999999965 4555443 2222
Q ss_pred HHHHHh--------------------hc-CCCcccccCCCceeeeecCCCccccccCCCCCChhHHhhcCCcceEeeecc
Q 002136 490 LEKAHQ--------------------KY-GKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHD 548 (961)
Q Consensus 490 ~~~~~~--------------------~~-~~~~~~~~~~dvldtWf~S~l~~~~~~~~p~~~~~~~~~~~P~d~~~~G~D 548 (961)
.+.... .+ .++..++|.+||||||||||.+++++++ |.++ ..|..++ +|++.+|+|
T Consensus 488 ~e~~~~~~~~~g~~~w~~~~idel~~~~~~~g~~~~rv~DvlDVWFDSGs~~~a~~~-~~~~-~~~~~~~-aD~~lEGsD 564 (933)
T COG0060 488 EELVGQLVEEKGIDDWHRPDIDELLPPCPEDGKEYRRVPDVLDVWFDSGSTPYAVLH-PREN-LKFPALF-ADFYLEGSD 564 (933)
T ss_pred HHHHHHHhhhcCchhhhccchHhhcCCCCCCcceeEecCcceEEEEcCCCCcccccC-Cccc-ccCcccc-CcEEEEecc
Confidence 221111 01 1233789999999999999999999888 7654 3344434 599999999
Q ss_pred ccccHHHHHHHHHhHhcCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHhCCCCCccccCHHH
Q 002136 549 ILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIER 628 (961)
Q Consensus 549 il~fw~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~~~~~D~~f~~~~ 628 (961)
|+|+||.++++.|.+++|+.||++|++|||++|.+|+|||||+||+|+|.+++++||||+||||+++++++.|+.|+++.
T Consensus 565 Q~RGWF~Ssl~~s~a~~~~aPYk~vltHGfvlDe~GrKMSKSlGN~v~P~~V~~~yGADiLRLwv~ssd~~~dl~~s~~i 644 (933)
T COG0060 565 QTRGWFYSSLLTSTALFGRAPYKNVLTHGFVLDEKGRKMSKSLGNVVDPQDVIDKYGADILRLWVASSDYWEDLRFSDEI 644 (933)
T ss_pred ccchhHHHHHHHHHHHcCCchHHHHhhcccEECCCCCCccccCCCcCCHHHHHHhhCchheeeeeeecCchhccccCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhhhcCChHHHHH
Q 002136 629 LTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGR 708 (961)
Q Consensus 629 ~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~ 708 (961)
++..++.+++|||++||+++|+.++++... ......+..+|+||+++++.++++++++|++|+|+++++
T Consensus 645 l~~~~~~~r~irNt~rF~l~nl~~fdp~~~-----------~~~~~~~~~~Drwil~rl~~l~~~v~eaye~y~f~~v~~ 713 (933)
T COG0060 645 LKQVREVYRKIRNTYRFLLGNLDDFDPKKD-----------AVLPEELRELDRWILSRLNSLVKEVREAYENYDFHKVVR 713 (933)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCcccc-----------ccchhhcchhHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999999999999999988876321 012235677899999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHhhhhhccC-CChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhcCC--CCceeecCCC
Q 002136 709 ETYDFFWSDFADWYIEASKARLYRS-EYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR--KEALIVSPWP 785 (961)
Q Consensus 709 ~i~~f~~~~~~n~Yle~~K~~l~~~-~~~~~~~~~~~~l~~vl~~~l~LL~Pf~P~itEeiw~~L~~~--~~si~~~~wP 785 (961)
.+++|+..++++|||+++|.|+|++ .+..++++++++|+++|..++++|+||+||+||+||+.|++. .+||++++||
T Consensus 714 ~l~~F~~~dLS~~Yld~~kdr~y~~~~~s~~rraa~~~Ly~il~~l~~~lAPilPftaEeiw~~l~~~~~~eSVhl~~~p 793 (933)
T COG0060 714 ALMNFVSEDLSNWYLDIIKDRLYTEAADSPDRRAAQTTLYHILKALVRLLAPILPFTAEEIWQNLPGERKEESVHLEDWP 793 (933)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHhCccCCCCceeEeccCC
Confidence 9999998999999999999999998 677799999999999999999999999999999999999887 6899999999
Q ss_pred CCCC-CC--ChHHHHHHHHHHHH----HHHHHhhhhhcccCCCceeeEEEE
Q 002136 786 QTSL-PR--HMSAIKRFENLQSL----TRAIRNARAEYSVEPAKRISASIV 829 (961)
Q Consensus 786 ~~~~-~~--d~~~~~~~~~~~~~----v~~ir~~r~~~~i~~~~~~~~~i~ 829 (961)
+.+. .. +..+....+..+++ -..+...|.+.-|.....+.+++.
T Consensus 794 ~~~~~~~~~~~~~~~r~~~~~k~R~~v~~~l~~~r~~~~I~~~lnak~~~~ 844 (933)
T COG0060 794 EVDEELIDVEAALAARWEALLKLRDPVNKALEAARLEKVIGSSLNAKVVIY 844 (933)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhcceeEEEEe
Confidence 9874 33 34444445555443 334444454444655555555555
No 17
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=100.00 E-value=2.3e-159 Score=1483.52 Aligned_cols=754 Identities=31% Similarity=0.551 Sum_probs=674.0
Q ss_pred CCCCCCh-hhHHHHHHHHHhCCCCCCCCC--CCCCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCC
Q 002136 59 LPKTFDF-TSEERIYNWWESQGYFKPNFE--RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (961)
Q Consensus 59 ~~~~~~~-~~E~~~~~~W~~~~~f~~~~~--~~~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G 135 (961)
+|+.||+ ++|++||++|+++++|++..+ .++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|++|
T Consensus 2 f~~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G 81 (861)
T TIGR00392 2 FPMRGNLSKREEKILAFWQENDIFEKVKKLNKGKPEFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPG 81 (861)
T ss_pred CCCCCChhHhhHHHHHHHHHCCchhhhhhccCCCCCeEEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCC
Confidence 6788999 899999999999999997543 4578899999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHHcCC-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHH
Q 002136 136 TDHAGIATQLVVEKMLAAEGI-KRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFI 214 (961)
Q Consensus 136 ~D~~Gl~~q~~vek~l~~~g~-~~~~~~~~~f~~~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~ 214 (961)
|||||+|||.+|+|.+...|. +...+++++|++.|++|+.++++.+++||++||+++||+|+|+|+||.|.++|+|+|.
T Consensus 82 ~D~~Glpie~~~ek~l~~~~~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p~y~~~~~~~f~ 161 (861)
T TIGR00392 82 WDTHGLPIEHKVEKKLGISGKKEISSLEIEEFREKCREFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLFK 161 (861)
T ss_pred cCCCccHHHHHHHHHhCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHH
Confidence 999999999999987632221 2234678999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCceEEcCeeeecCCCCCcccccccccccc----CCCeEEEEEEEecCCCe--------eEEEEecCCCccCCCcE
Q 002136 215 RLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE----EPGTLYYIKYRVAGRSD--------FLTIATTRPETLFGDVA 282 (961)
Q Consensus 215 ~L~~~GlIy~~~~~v~w~p~~~t~lsd~Ev~~~e----~~~~~~~~~~~~~~~~~--------~l~v~TtrPeTl~g~~a 282 (961)
+|+++|||||+.++|+|||.|+|+|||+||+|++ ..++++||+|++.+++. +++|||||||||+||+|
T Consensus 162 ~l~~~gliyr~~~~v~w~p~~~T~La~~Ev~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~l~i~TTrP~Tl~~~~a 241 (861)
T TIGR00392 162 EAHEKGLLYRGLKPVYWSPRCRTALAEAEVEYKENYKDVKDPSIYVKFPVKKDKKTYLKVKLSSLLIWTTTPWTLPSNLA 241 (861)
T ss_pred HHHHCCCEeecceeeecCCCcCCcccHHHHhcccccccccCceEEEEEEecCCcccccccccceEEEEECCcccccCCee
Confidence 9999999999999999999999999999999987 78999999999976554 89999999999999999
Q ss_pred EEECCCCc-----------hh--------------------------hhhccCeeeccCCCCCee------ee-eecCcc
Q 002136 283 LAVNPQDE-----------HY--------------------------SQFIGMMAIVPMTYGRHV------PI-ISDKYV 318 (961)
Q Consensus 283 v~v~P~~~-----------~y--------------------------~~l~g~~~~~P~~~~~~i------pi-i~~~~V 318 (961)
|||||+++ +| ++|+|++|.||+ .++.+ || ++++||
T Consensus 242 i~v~p~~~Y~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~-~~~~~~~~~~~p~v~~~~~V 320 (861)
T TIGR00392 242 IAVHPDFEYALVQDNTKVEYFILAKKLVEKLYNKAGSDYEIIKTFKGSDLEGLEYEHPL-YDFVSQLKEGAPVVIGGDHV 320 (861)
T ss_pred eeeCCCCceEEEEcCCCCcEEEEeHHHHHHHHHhcCCceEEEeeecchhhCCCEEECCC-CccccccccCCcEEeCCCCC
Confidence 99999975 33 568999999999 47788 85 677999
Q ss_pred ccCCCcceeEeCCCCChhHHHHHHHhCCCceeecCCCCccccccc-------ccCCCchHHHHHHHHHHHHHcCCccccc
Q 002136 319 DKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAG-------LFRGLDRFEARKKLWSDLEETGLAVKKE 391 (961)
Q Consensus 319 ~~~~GTG~v~~~Pah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g-------~~~G~~~~~ar~~i~~~L~~~g~~~~~~ 391 (961)
++++|||+||+|||||++||+++++||||+++++|++|++++..+ .|.|++++|||++|++.|++.|++++.+
T Consensus 321 ~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~vd~~g~~~~~~~~~~g~~~~~~g~~~~~a~~~ii~~L~~~g~l~~~~ 400 (861)
T TIGR00392 321 TTEDGTGIVHTAPGHGEEDYEIGKKYGLEVLSPVDEKGVYTEGVNDFQGRFVKDADKDIIKANKIIIEQLKDKGLLLKAE 400 (861)
T ss_pred CCCCCCceeEcCCCCCHHHHHHHHHcCCCcccccCCCceECCcCccccccccccCCccHHHhHHHHHHHHHhCCCeeeee
Confidence 999999999999999999999999999999999999999876554 5899999999999999999999999999
Q ss_pred cccccCCcccCCCCceeeeeccceeeeccHHHHHHHHHHHcCCceeechhHHHHHHHHHhcCCCceeeeccCCCcccceE
Q 002136 392 PHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVW 471 (961)
Q Consensus 392 ~~~~~~p~~~r~~~~v~~~~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~pIP~~ 471 (961)
++.|++|+|||||++|++++++||||++++++++++++++ +++|+|+..++++.+||++++||||||||+||||||+|
T Consensus 401 ~~~h~~p~~~R~~~~v~~~~~~QWFi~~~~~k~~~l~~~~--~i~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~ 478 (861)
T TIGR00392 401 KITHSYPHCWRTKTPVIYRATEQWFIKTKDIKDQMLEQIK--KVNWVPEWGEGRFGNWLENRPDWCISRQRYWGIPIPIW 478 (861)
T ss_pred eEecCCCccCCCCCEEEEecCccccEEcHHHHHHHHHHhC--CcEEECchHHHHHHHHHhCCCcceeeccccCCCeeeEE
Confidence 9999999999999999999999999999999999999995 69999999999999999999999999999999999999
Q ss_pred EEcCCcccEEEecChHHHHHHHHh--------------------hcCCCcccccCCCceeeeecCCCccccccCCCCCCh
Q 002136 472 YIVGKEEEYIVARNADEALEKAHQ--------------------KYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSA 531 (961)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~dvldtWf~S~l~~~~~~~~p~~~~ 531 (961)
+|++ ++..++..+.++....... .|++...+.|++|||||||||+++|++..+||.++
T Consensus 479 ~~~~-~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~r~~dvlDvWfdS~~~~~~~~~~~~~~- 556 (861)
T TIGR00392 479 YCED-TGEPIVVGSIEELIELIELKGIDAWFEDLHRDFLDKITLKSGDGGEYRRVPDVLDVWFDSGSMPYASIHYPFEN- 556 (861)
T ss_pred EECC-CCCCcCchhHHHHHHHHHHhCCccccccchhhhcCchhccCCCCcceEEccccccchhhcCcchHHhcCCCCCc-
Confidence 9975 4445666666655432110 12222468899999999999999999999999766
Q ss_pred hHHhhcCCcceEeeeccccccHHHHHHHHHhHhcCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHH
Q 002136 532 DDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRF 611 (961)
Q Consensus 532 ~~~~~~~P~d~~~~G~Dil~fw~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~ 611 (961)
.+|++|||+|++++|+||++||+.+|++.++.+.+..||++|++||||+|.+|+|||||+||+|+|.++|++||+|++||
T Consensus 557 ~~f~~~~P~d~~i~G~Di~r~Wf~~~~~~~~~~~~~~P~k~v~~hG~vl~~~G~KMSKSkGNvI~p~d~i~~yGaDalR~ 636 (861)
T TIGR00392 557 EKFKEVFPADFILEGSDQTRGWFYSSLAIGTALFGQAPYKNVITHGFTLDEKGRKMSKSLGNVVDPLKVINKYGADILRL 636 (861)
T ss_pred chhhccCCceEEEEecchhccHHHHHHHHHHHHcCCCChHhhEecceEECCCCCCcCCCCCCCCCHHHHHHHcCHHHHHH
Confidence 67999999999999999999999999999998889999999999999998899999999999999999999999999999
Q ss_pred HHHhCCCCCccccCHHHHHHHHH-HHHHHHHHHHHHH--hhCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHH
Q 002136 612 TISLGTAGQDLSLSIERLTANKA-FTNKLWNAGKFIL--QNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLH 688 (961)
Q Consensus 612 ~L~~~~~~~D~~f~~~~~~~~~~-~~nkl~N~~rf~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~ 688 (961)
||++.++++|++|+++.+....+ ++|++||+++|+. +++.++.+... ......+...|+|++++++
T Consensus 637 ~ll~~~~~~D~~fs~~~l~~~~~~~~n~l~N~~~~~~~~~~l~~~~~~~~-----------~~~~~~l~~~d~~ll~~l~ 705 (861)
T TIGR00392 637 YVASSDPWEDLRFSDEILKQVVEKYRKIRWNTYRFLLTYANLDKFDPLFN-----------SVAVEKFPEEDRWILSRLN 705 (861)
T ss_pred HHHhCCCCCCceECHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcccc-----------ccccccCCHHHHHHHHHHH
Confidence 99999339999999999988554 9999999999998 66544332000 0011234567999999999
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhhHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHH
Q 002136 689 MLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEEL 768 (961)
Q Consensus 689 ~~~~~v~~a~e~~~f~~A~~~i~~f~~~~~~n~Yle~~K~~l~~~~~~~~~~~~~~~l~~vl~~~l~LL~Pf~P~itEei 768 (961)
.++++++++|++|+|+.|++.+++|++.++||+|++.+|++++....++..++++.+++.+++.+++||+|||||+||+|
T Consensus 706 ~~~~~v~~~~e~~~~~~a~~~l~~f~~~~l~n~Yi~~~k~~lw~~~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~~aeei 785 (861)
T TIGR00392 706 SLVEEVNEALEKYNFHKVLRALQDFIVEELSNWYIRIIRDRLYCEAKDNDKRAAQTTLYYALLTLVRLLAPFLPHTAEEI 785 (861)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 99999999999999999999999999888999999999998886544333447888999999999999999999999999
Q ss_pred HHHhcCC--CCceeecCCCCCCC-CCChHHHHHHHHHHHHHHHHHhhhhhcccCCCceeeEEE
Q 002136 769 WQSLRKR--KEALIVSPWPQTSL-PRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISASI 828 (961)
Q Consensus 769 w~~L~~~--~~si~~~~wP~~~~-~~d~~~~~~~~~~~~~v~~ir~~r~~~~i~~~~~~~~~i 828 (961)
|+.|+.. .+||+.++||+.+. +.|+.+++.++.++++++.+|++|++.+++.++++...+
T Consensus 786 w~~L~~~~~~~si~~~~wP~~~~~~~d~~~~~~~~~l~~~i~~ir~ir~~~~~~~~~~~~~~~ 848 (861)
T TIGR00392 786 YQNLPGGEEEESVHLNLWPEVDEEFIDEALEANMAIVREIVEAFLALRDAANKKLRQPLKELV 848 (861)
T ss_pred HHhccccCCCCceeccCCCCCchhhcCHHHHHHHHHHHHHHHHHHHHHHHhChhhhhHhhcCE
Confidence 9999764 46899999999874 678889999999999999999999999998776665433
No 18
>PLN02959 aminoacyl-tRNA ligase
Probab=100.00 E-value=6.3e-143 Score=1340.26 Aligned_cols=725 Identities=22% Similarity=0.361 Sum_probs=609.3
Q ss_pred CCCCCCCCCh-hhHHHHHHHHHhCCCCCCCCCC----CCCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCe
Q 002136 56 KDTLPKTFDF-TSEERIYNWWESQGYFKPNFER----GSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPT 130 (961)
Q Consensus 56 ~~~~~~~~~~-~~E~~~~~~W~~~~~f~~~~~~----~~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~V 130 (961)
.+..++.+++ ++|++||++|+++++|+++.+. ++++|++++||||+||.||||||+|++++|+++||+||+||+|
T Consensus 6 ~~~~~~r~~l~~iE~k~q~~W~~~~~fe~~~~~~~~~~~~kf~i~~ppPY~NG~lHiGHa~t~t~~D~i~Rykrm~G~~v 85 (1084)
T PLN02959 6 GKSTARRDRLLEIEVAVQKWWEEEKVFEAEAGDEPPKPGEKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRLRGANV 85 (1084)
T ss_pred ccCCchhcCHHHHHHHHHHHHHhcCCcccCcccccCCCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCcc
Confidence 3456788998 8999999999999999987652 2478999999999999999999999999999999999999999
Q ss_pred eecCCCCCCCchHHHHHHHHH---HHcCCCc----------------------cccCHHHHHHHHHHHHHH---------
Q 002136 131 LWLPGTDHAGIATQLVVEKML---AAEGIKR----------------------VELSRDEFTKRVWEWKEK--------- 176 (961)
Q Consensus 131 l~~~G~D~~Gl~~q~~vek~l---~~~g~~~----------------------~~~~~~~f~~~~~~~~~~--------- 176 (961)
+|++||||||+||+.+++|.. .+.|..+ .++++++|.+.|++++.+
T Consensus 86 lfp~G~d~tGlPIe~~aek~~~ei~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~k~~~k~~~~~~~~~ 165 (1084)
T PLN02959 86 LLPFAFHCTGMPIKASADKLAREIQQYGNPPVFPEEDEDEAAAVAAAKAEAEAAAAPPDKFKGKKSKAVAKSGTQKYQWE 165 (1084)
T ss_pred CCCCCcCCCCccHHHHHHHHHHHHHHcCCCcccccccccccccccccccccccccccHHHHHHHHHHHHHHhCCchHHHH
Confidence 999999999999999998854 3446432 356778899998887655
Q ss_pred ------------------------HHHHHHHHHHHhCCccCCCCCccCCC--hhhHHHHHHHHHHHHhcCceEEcCeeee
Q 002136 177 ------------------------YGGTITSQIKRLGASCDWTRERFTLD--EQLSRAVVEAFIRLHEKGLIYQGSYMVN 230 (961)
Q Consensus 177 ------------------------~~~~i~~~l~~lG~s~Dw~r~~~T~d--~~~~~~v~~~F~~L~~~GlIy~~~~~v~ 230 (961)
+...++++|++||+++||+|+|+|+| |.|.++|+|+|.+|+++|+||+|.++|+
T Consensus 166 ~~~~~~~~~~~i~~f~dp~~~~~yF~~~~~~~~k~lG~~iDW~r~f~T~d~np~y~~~v~wqf~~L~ekG~I~~g~rpv~ 245 (1084)
T PLN02959 166 IMRSFGLPDSEIAKFQDPYHWLSYFPPLAKEDLKAFGLGCDWRRSFITTDVNPYYDAFVRWQFRKLKKKGKIVKDKRYTI 245 (1084)
T ss_pred HHhhcCCchhhhhhccCHHHHHHhccHHHHHHHHHhCceEeCCCCcCCCCCChhHHHHHHHHHHHHHHCCCEEecCeeee
Confidence 33678999999999999999999999 9999999999999999999999999999
Q ss_pred cCCCCCccccccccccccCCCeEEE--EEEEec-----------CCCeeEEEEecCCCccCCCcEEEECCCCc-------
Q 002136 231 WSPNLQTAVSDLEVEYSEEPGTLYY--IKYRVA-----------GRSDFLTIATTRPETLFGDVALAVNPQDE------- 290 (961)
Q Consensus 231 w~p~~~t~lsd~Ev~~~e~~~~~~~--~~~~~~-----------~~~~~l~v~TtrPeTl~g~~av~v~P~~~------- 290 (961)
|||.|+|+|||+|++|.+..++..| |||++. +++.++++||||||||+|++||||||+++
T Consensus 246 wcp~~~t~ladhe~~~~e~~~~~~y~~ikf~v~~~~~~~~~~~~~~~~~l~~aTtrPeTl~g~ta~~VnP~~~Y~~~~~~ 325 (1084)
T PLN02959 246 YSPLDGQPCADHDRASGEGVGPQEYVLIKMEVLPPFPGKLKALEGKKVFLAAATLRPETMYGQTNCWVLPDGKYGAYEIN 325 (1084)
T ss_pred eCCCCCCCchhhHHhcCCCCCcceeEEEEEeecCcchhhhhhcCCCCeEEEEEeCccchhhhheeEEECCCCeEEEEEec
Confidence 9999999999999999987766555 678863 33579999999999999999999999976
Q ss_pred ---------h------h------------------hhhccCeeeccCCCCCe-eeeeecCccccCCCcceeEeCCCCChh
Q 002136 291 ---------H------Y------------------SQFIGMMAIVPMTYGRH-VPIISDKYVDKEFGTGVLKISPGHDHN 336 (961)
Q Consensus 291 ---------~------y------------------~~l~g~~~~~P~~~~~~-ipii~~~~V~~~~GTG~v~~~Pah~~~ 336 (961)
+ | ++|+|++|.+|++ +++ +||+++.||++++|||+||+|||||++
T Consensus 326 ~~e~~i~s~~~~~~~~~q~~~~~~~~~~~l~~~~G~~L~G~~~~~Pl~-~~~~i~ilp~~~V~~~~GTGvV~~vPah~pd 404 (1084)
T PLN02959 326 DTEVFILTARAALNLAYQNFSKVPGKPTCLVELTGYDLIGLPLKSPLA-FNEVIYALPMLTILTDKGTGVVTSVPSDSPD 404 (1084)
T ss_pred CCeEEEEehhhhhhhHHhhhcccCCCcEEEEEEEHHHhCCCEEECCCC-CCcceeEeceEEEeCCCCeeeEEeCCCCCHH
Confidence 2 4 5799999999995 555 999999999999999999999999999
Q ss_pred HHHH----------HHHhCC--------CceeecCCCCc----------------------------------cccc---
Q 002136 337 DYLL----------ARKLGL--------PILNVMNKDGT----------------------------------LNEV--- 361 (961)
Q Consensus 337 D~~~----------~~~~~l--------~~~~~~~~~G~----------------------------------~~~~--- 361 (961)
||.+ +++||| ++++++|.+|. +.+.
T Consensus 405 Dy~~~~dl~~k~~~~~kygi~~~~~~~~~~i~iid~~g~G~~~a~~~~~~~~i~s~~d~~~l~~a~~~~Y~~~f~~g~m~ 484 (1084)
T PLN02959 405 DYMALSDLKAKPALRAKYGVKDEWVLPFEVVPIINIPEFGDKSAEKVCEDLKIKSQNDKEKLAEAKRLTYLKGFTDGTML 484 (1084)
T ss_pred HHHHHHhhccchhHHHHcCCCcccccccCCcCccccCCCCcchhHHHHHhhcccccchhhHHHHHhhhhhhhcccccccc
Confidence 9998 577887 45788777653 2222
Q ss_pred ccccCCCchHHHHHHHHHHHHHcCCccc-cccccccCCcccCCCCceeeeeccceeeecc--HHHHHHHHHHHcCCceee
Q 002136 362 AGLFRGLDRFEARKKLWSDLEETGLAVK-KEPHTLRVPRSQRGGEVIEPLVSKQWFVTME--PLAEKALHAVEKGELTIM 438 (961)
Q Consensus 362 ~g~~~G~~~~~ar~~i~~~L~~~g~~~~-~~~~~~~~p~~~r~~~~v~~~~~~qwF~~~~--~~~~~~~~~~~~~~~~~~ 438 (961)
+|.|+|++|+|||++|+++|++.|+++. .+++ .|+|+|||++|++++++||||+++ +++++++++++ +++|+
T Consensus 485 ~g~~~G~~v~eAr~~Ii~~L~~~G~l~~~~ep~---~pv~~R~g~~~~v~l~~QWFi~~~~~~~k~~a~~~l~--~v~~~ 559 (1084)
T PLN02959 485 VGEYAGRKVQEAKPLIKKKLIEAGQAILYSEPE---KKVMSRSGDECVVALTDQWYLTYGEEEWKKKAEKCLS--KMNLY 559 (1084)
T ss_pred CcCcCCcCHHHHHHHHHHHHHhCCCceeeeEcC---CCeEECCCCEEEEeecCCeeEECCchHHHHHHHHHHc--ccEEE
Confidence 7899999999999999999999998874 5553 589999999999999999999998 69999999995 69999
Q ss_pred chhHHHHHHHHHhcCCCceeeeccCCCcccce---EEEcCCcc--cEEEecChHHHHHHHHhhcCCC---ccccc-CCCc
Q 002136 439 PERFEKIYNHWLSNIKDWCISRQLWWGHRIPV---WYIVGKEE--EYIVARNADEALEKAHQKYGKN---VEIYQ-DPDV 509 (961)
Q Consensus 439 P~~~~~~~~~wl~~l~DW~ISRq~~WG~pIP~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~dv 509 (961)
|+.++++|.+||+|++|||||||||||||||+ |+++++++ -|++..+..+.+... ..+|.+ +...+ ++||
T Consensus 560 P~~~~~~~~~wl~~l~DWciSRQr~wGtpIPWd~~~~ieslsdstiy~a~yti~~~~~~~-~~~g~~~~~i~~~~~~~dV 638 (1084)
T PLN02959 560 SDETRHGFEHTLGWLNQWACSRSFGLGTRIPWDEQFLIESLSDSTIYMAYYTVAHLLQGG-DMYGKDKSSIKPEQMTDEV 638 (1084)
T ss_pred CHHHHHHHHHHHhCCCceeecccccCCCcCCcccceeeccCCCCceeechhhHHHHHhhh-hccCCccccCChhhcCccc
Confidence 99999999999999999999999999999993 34443333 244445555544332 122221 22223 6899
Q ss_pred eeeeecCCCccccccCCCCCC----hhHHhhcCCcceEeeeccccccHHHHHHHHHhHhcCCCCc-eEEEEeceEEcCCC
Q 002136 510 LDTWFSSALWPFSTLGWPDVS----ADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPF-SHVYLHGLIRDSQG 584 (961)
Q Consensus 510 ldtWf~S~l~~~~~~~~p~~~----~~~~~~~~P~d~~~~G~Dil~fw~~~~i~~~~~l~~~~Pf-k~v~~hg~v~d~~G 584 (961)
||+||+|++||+++ |||.+. +.+|++|||+|++++|+||++||+.++++.+.+++++.|| +.|++||+|+ .+|
T Consensus 639 ~D~wF~Sg~~p~~t-~~p~~~l~~~r~ef~~~yP~Dl~~sG~Dii~~wl~~~l~~~~al~~~~P~p~~v~v~G~V~-~~G 716 (1084)
T PLN02959 639 WDFVFCGGPLPKSS-DIPAELLEKMKQEFEYWYPFDLRVSGKDLIQNHLTFAIYNHTAIWAEEHWPRGFRCNGHLM-LNS 716 (1084)
T ss_pred eeEeecCCCccccc-CCCHHHHhhhhHHHHhhCCCeEEEecccHHHHHHHHHHHHHHHhcCCCCCCceEEEccEEe-cCC
Confidence 99999999999988 998753 4789999999999999999999999999999999999999 5799999999 999
Q ss_pred ccccccCCCccCchhhhhhcChhHHHHHHHhCCC-CCccccCHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhHHHHH
Q 002136 585 RKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILL 663 (961)
Q Consensus 585 ~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~~~-~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~ 663 (961)
+|||||+||+|+|.++|++||||++||||+++++ .+|++|+.+...+ +..+++|.++|+..++.....
T Consensus 717 ~KMSKSkGNvI~p~diI~kyGADalRl~la~~~~~~~D~nF~~k~~n~---~~~~l~n~~~~~~~~~~~~~~-------- 785 (1084)
T PLN02959 717 EKMSKSTGNFLTLRQAIEEFSADATRFALADAGDGVDDANFVFETANA---AILRLTKEIAWMEEVLAAESS-------- 785 (1084)
T ss_pred cCccccCCCcCCHHHHHHHhCchHHHHHHhhcCCccCCCCccHHHHHH---HHHHHHHHHHHHHHhhhhhcc--------
Confidence 9999999999999999999999999999999877 8999999887764 345566666665554321000
Q ss_pred hhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhhHHH-HHHhhh--hhccCCChHHHH
Q 002136 664 AYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWY-IEASKA--RLYRSEYDSDAI 740 (961)
Q Consensus 664 ~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~i~~f~~~~~~n~Y-le~~K~--~l~~~~~~~~~~ 740 (961)
. .....+...|+||+++++.++++++++|++|+|+.|++.. || |+..++ +++++.+ .
T Consensus 786 ---~---~~~~~~~~~D~wils~l~~~i~~v~~a~e~y~f~~A~~~~----------~Yel~~~k~~yr~~~~~~----~ 845 (1084)
T PLN02959 786 ---L---RTGPPSTYADRVFENEINIAIAETEKNYEAMMFREALKSG----------FYDLQAARDEYRLSCGSG----G 845 (1084)
T ss_pred ---c---CCcccCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH----------HHHHHHhHHHHhhccccc----h
Confidence 0 0011245689999999999999999999999999999963 23 444444 4454311 1
Q ss_pred HHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhcCCCCceeecCCCCCCCCCChHHHHHHHHHHHHHHHHHhhhhhcccCC
Q 002136 741 IAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQTSLPRHMSAIKRFENLQSLTRAIRNARAEYSVEP 820 (961)
Q Consensus 741 ~~~~~l~~vl~~~l~LL~Pf~P~itEeiw~~L~~~~~si~~~~wP~~~~~~d~~~~~~~~~~~~~v~~ir~~r~~~~i~~ 820 (961)
.++.+++++|+.+++||||||||+|||||+.|.+..+||++++||..+ ..|+.+++.++.+++++..+|++++.+...+
T Consensus 846 ~~~~~L~~vl~~~l~LLaP~~PfiaEEiW~~l~~~~~sI~~~~wP~~~-~~d~~~e~~~~~l~~~i~~iR~~~~~~~~~~ 924 (1084)
T PLN02959 846 MNRDLVWRFMDVQTRLITPICPHYAEHVWREILKKEGFAVTAGWPVAG-EPDLTLKRANKYLQDSIVSFRKLLQKQLAGS 924 (1084)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCeEEecCCCCCC-ccCHHHHHHHHHHHHHHHHHHHhHHHhchhh
Confidence 457799999999999999999999999999995445699999999986 3578889999999999999999998766554
Q ss_pred C
Q 002136 821 A 821 (961)
Q Consensus 821 ~ 821 (961)
+
T Consensus 925 ~ 925 (1084)
T PLN02959 925 K 925 (1084)
T ss_pred h
Confidence 3
No 19
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=100.00 E-value=2.8e-141 Score=1318.19 Aligned_cols=716 Identities=24% Similarity=0.380 Sum_probs=615.7
Q ss_pred hhHHHHHHHHHhCCCCCCCCCCCCCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHH
Q 002136 66 TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQL 145 (961)
Q Consensus 66 ~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~ 145 (961)
++|++||++|+++++|+++++ ++++|+|++||||+||.|||||+++++++|+++||+||+|++|+|++||||||+||+.
T Consensus 2 ~iE~k~~~~W~~~~~fe~~~~-~~~kf~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~pi~~ 80 (938)
T TIGR00395 2 AIEKKWQKRWEEAHIFEADPD-DREKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPILG 80 (938)
T ss_pred hHHHHHHHHHHhCCCcccCCC-CCCceEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCccCCCCCchHH
Confidence 489999999999999998765 4788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcC------CCccccCHHHHHHHH--HHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHH
Q 002136 146 VVEKMLAAEG------IKRVELSRDEFTKRV--WEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLH 217 (961)
Q Consensus 146 ~vek~l~~~g------~~~~~~~~~~f~~~~--~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~ 217 (961)
++++...+.+ .+..++++++|.+.| ++|++++.+.+++||++||+++||+|+|+|+||.|.++|+|+|.+|+
T Consensus 81 ~aek~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~dp~y~~~v~~~f~~L~ 160 (938)
T TIGR00395 81 LAELIKRRDELTIKNYTEVHAIPREELLKFTDPEYIVEYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFIEWQMNKLK 160 (938)
T ss_pred HHHHhhhhhhhccccchhhccCCHHHHHhhcCHHHHHHHHHHHHHHHHHHhCceEECCCCccCCChhHHHHHHHHHHHHH
Confidence 9888653321 145678999999998 99999999999999999999999999999999999999999999999
Q ss_pred hcCceEEcCeeeecCCCCCccccccccccccCC--CeEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCc-----
Q 002136 218 EKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEP--GTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDE----- 290 (961)
Q Consensus 218 ~~GlIy~~~~~v~w~p~~~t~lsd~Ev~~~e~~--~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~----- 290 (961)
++|+||+|+++|+|||.|+|+|||+|+++.+.. +.++||+|++.+++.+++|||||||||+|++||||||+++
T Consensus 161 e~G~iy~g~~~v~wcp~~~t~lsd~e~~~~e~~~~~~~~~ikf~~~~~~~~l~~aTtRPETl~g~tav~V~P~~~Y~~~~ 240 (938)
T TIGR00395 161 ELGLIVKGEHPVRYCPKDGNPVEDHDLLSGEGVTIVEYILIKFELEDGAFYFVAATLRPETVYGVTNCWVNPTITYVIAE 240 (938)
T ss_pred HCCCEecCCeeEeecCCCCCCCchhHhccCCccccceEEEEEEEcCCCceEEEEeeCCcchhhcceeEEECCCCcEEEEE
Confidence 999999999999999999999999999987754 5789999999887789999999999999999999999986
Q ss_pred ----------------hh-------------hhhccCeeeccCCCCCeeeeeecCccccCCCcceeEeCCCCChhHHHHH
Q 002136 291 ----------------HY-------------SQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLA 341 (961)
Q Consensus 291 ----------------~y-------------~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~v~~~Pah~~~D~~~~ 341 (961)
+| ++|+|+++.+|+ .++.+||++++||++++|||+||+|||||++||+++
T Consensus 241 ~~~e~~i~s~~~~~~~~~q~~~~~~~~~~~g~~l~G~~~~~P~-~~~~ipil~~~~V~~~~GTGvV~~~Pah~p~Dy~~~ 319 (938)
T TIGR00395 241 VGGEKWITSKEAFENLSYQKLKYKPIEEVPGKQFIGKKVHNPV-VGPEVPILPAEFVDTTKGTGVVMSVPAHAPDDYIAL 319 (938)
T ss_pred eCCcEEEEeHHHHHhhhhcccceeEEEEEchHhccCCEEECCC-CCCeeEEeecceeecCCCcceEEeCCCCCHHHHHHH
Confidence 23 689999999998 589999999999999999999999999999999998
Q ss_pred HHh--------------CCCceeecCC---------------------------------------CCcccccccccCCC
Q 002136 342 RKL--------------GLPILNVMNK---------------------------------------DGTLNEVAGLFRGL 368 (961)
Q Consensus 342 ~~~--------------~l~~~~~~~~---------------------------------------~G~~~~~~g~~~G~ 368 (961)
+++ +++++++++. +|+|++++|.|+|+
T Consensus 320 ~~l~~~~~~~gi~~~~~~~~~i~ii~~~~~g~~~a~~~~~~~~i~~~~d~~~l~~a~~~~y~~~f~~G~m~~~~~~~~G~ 399 (938)
T TIGR00395 320 EDLLHDPEYLGIKPVVIDIEPVPLIHTDGYGDLPAKEIVEEKGIKSQKDKNLLEEATKILYKEEYHTGVMIYNIPPYKGM 399 (938)
T ss_pred HHhhhcchhcCCcchhcccCCccceecCCCCcccHHHHHHHhcCCCchhhhHHHHHHHHHhhhhccCceeccCCcccCCc
Confidence 864 3555555432 57778888999999
Q ss_pred chHHHHHHHHHHHHHcCCccccccccccCCcccCCCCceeee-eccceeeecc--HHHHHHHHHHHcCCceeechhHHHH
Q 002136 369 DRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPL-VSKQWFVTME--PLAEKALHAVEKGELTIMPERFEKI 445 (961)
Q Consensus 369 ~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~-~~~qwF~~~~--~~~~~~~~~~~~~~~~~~P~~~~~~ 445 (961)
+++|||++|+++|++.|++++.+.+.+ .|+|+|||++++++ +++||||+++ .++++++++++ +++|+|+..+++
T Consensus 400 ~v~ear~~i~~~L~~~g~~~~~~~~~~-~~v~~R~g~~~vv~~~~~QWFi~~~~~~~k~~~~~~l~--~~~~~P~~~~~~ 476 (938)
T TIGR00395 400 KVSEAKEKVKADLIDAGLADVMYEFSE-SPVICRCGTDCIVKVVEDQWFVKYSDESWKELAHECLE--GMRIIPEEVKNA 476 (938)
T ss_pred CHHHhHHHHHHHHHHCCCceEeeecCC-CCcEecCCCeEEEeccCCCCeEEcCcHHHHHHHHHHHh--cCEEeCHHHHHH
Confidence 999999999999999999998877643 47788999999987 9999999999 59999999996 589999999999
Q ss_pred HHHHHhcCCCceeeeccCCCcccce---EEEcCCccc--EEEecChHHHHHHHHhhcCCCcccccCCCceeeeecCCCcc
Q 002136 446 YNHWLSNIKDWCISRQLWWGHRIPV---WYIVGKEEE--YIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWP 520 (961)
Q Consensus 446 ~~~wl~~l~DW~ISRq~~WG~pIP~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvldtWf~S~l~~ 520 (961)
+.+||++++||||||||+||||||+ |++++.++. |+...+..+.+... .++. -...++++|+||.++..+
T Consensus 477 ~~~~l~~l~DW~ISRqr~WGtpIP~d~~~~ieslsdstiY~~~~~i~~~l~~~--~~~~---~~l~~ev~D~~~~~~~~~ 551 (938)
T TIGR00395 477 FEGKIDWLKDWACCRRYGLGTRLPWDEKWLIESLSDSTIYMAYYTIAHYLNKD--YYGN---EQMTDEFFDYIFLGKGDV 551 (938)
T ss_pred HHHHHhhhhhcccccccccCcccceeecEEeeecchhhhhhhhccHHHHhhcc--CCCh---HHCCcccCceEEECCCCh
Confidence 9999999999999999999999996 666543332 33223333222110 0110 112468999999876444
Q ss_pred ccccCCCCCC----hhHHhhcCCcceEeeeccccccHHHHHHHHHhHhcCCCCc-eEEEEeceEEcCCCccccccCCCcc
Q 002136 521 FSTLGWPDVS----ADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPF-SHVYLHGLIRDSQGRKMSKTLGNVI 595 (961)
Q Consensus 521 ~~~~~~p~~~----~~~~~~~~P~d~~~~G~Dil~fw~~~~i~~~~~l~~~~Pf-k~v~~hg~v~d~~G~KMSKS~GNvI 595 (961)
...|||... +.+|++|||+|++++|+||++||..++++++.++.+..|| +.+++||||++ +|+|||||+||+|
T Consensus 552 -~~t~~~~~~~~~~~~ef~~~yP~D~~~~GkDii~~H~~~~i~~~~a~~~~~~~Pk~i~~~G~vl~-~G~KMSKSlGNvI 629 (938)
T TIGR00395 552 -KNTNIPLPAIQKLRREFEYWYPLDWRISGKDLIPNHLTFYIFHHVAIFPEKFWPRGIVVNGYVML-EGKKMSKSKGNVL 629 (938)
T ss_pred -hhcCCCHHHHHHHHHHHhhcCCceEEEEeeccccchHHHHHHHHHHcCCccccCcEEEEeceEEe-CCccccCcCCCCC
Confidence 345776531 3689999999999999999999999888888877766555 89999999995 9999999999999
Q ss_pred CchhhhhhcChhHHHHHHHhCCC-CCccccCHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhHHHHHhhccchhhhhc
Q 002136 596 DPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLC 674 (961)
Q Consensus 596 ~p~dii~~yGaDalR~~L~~~~~-~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (961)
+|.++|++||+|++||||++.++ ++|++|+++.+.+.+++++++||+++++......... .
T Consensus 630 ~p~d~i~~yGaDalRl~Ll~~~~~~~D~~fs~~~~~~~~~~l~~l~n~~~~~~~~~~~~~~------------------~ 691 (938)
T TIGR00395 630 TLEQAVEKFGADVARLYIADAAETVQDADWKESEVEGTILRLERLYEFAEEITKESNLETG------------------E 691 (938)
T ss_pred CHHHHHHHcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhhcccCCC------------------c
Confidence 99999999999999999999877 9999999999999999999999999887654211000 1
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhhhcCChHHHH-HHHHHHHHHhhhHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHH
Q 002136 675 KAPLPECWVVSKLHMLIDTVTASYDKYFFGDVG-RETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENI 753 (961)
Q Consensus 675 ~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~-~~i~~f~~~~~~n~Yle~~K~~l~~~~~~~~~~~~~~~l~~vl~~~ 753 (961)
..+..|+|++++++.++++++++|++|+|+.|+ ..+++|++ .||||++..+.+ ...++..+++.+
T Consensus 692 ~~~~~D~wlls~l~~~i~~v~~a~e~~~~~~Al~~~l~~~~~--~~n~Yl~~~~~~------------~~~~l~~~l~~~ 757 (938)
T TIGR00395 692 ETSFIDRWLESRMNAAIKETYEAMENFQTRKAVKYALFDLQA--DVDWYRRRGGVN------------HKDVLARYLETW 757 (938)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--HHHHHHHhCcch------------HHHHHHHHHHHH
Confidence 235679999999999999999999999999999 67899984 489998753321 234788999999
Q ss_pred HHHhCCCchhhHHHHHHHhcCCCCceeecCCCCCCC-CCChHHHHHHHHHHHHHHHHHhhhhhcccCCCceeeEEEE
Q 002136 754 LKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQTSL-PRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISASIV 829 (961)
Q Consensus 754 l~LL~Pf~P~itEeiw~~L~~~~~si~~~~wP~~~~-~~d~~~~~~~~~~~~~v~~ir~~r~~~~i~~~~~~~~~i~ 829 (961)
++||||||||+||+||+.|+.+ +||+.++||+++. ..|+++++.++.++++++++|+. .+++++++..+.|.
T Consensus 758 ~~LLaP~~P~~aEeiw~~Lg~~-~sv~~~~wP~~~~~~~d~~~~~~~~~~~~~i~~iR~~---~~~~~~~p~~~~i~ 830 (938)
T TIGR00395 758 IKLLAPFAPHFAEEMWEEVGNE-GFVSLAKFPEASEPAVDKEVEAAEEYLRNLVRDIQEI---AKIDASKPKRVYLY 830 (938)
T ss_pred HHHhcCcccHHHHHHHHHcCCC-CeEEecCCCCCCcccCCHHHHHHHHHHHHHHHHHHHh---hccCCCCCcEEEEE
Confidence 9999999999999999999754 6999999999885 67899999999999999888874 56777777776665
No 20
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=100.00 E-value=7e-141 Score=1265.48 Aligned_cols=552 Identities=41% Similarity=0.773 Sum_probs=486.4
Q ss_pred HHHHHHHhCCCCCCC--CCCCCCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHH
Q 002136 70 RIYNWWESQGYFKPN--FERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVV 147 (961)
Q Consensus 70 ~~~~~W~~~~~f~~~--~~~~~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~v 147 (961)
|||++|+++++|+.. ..+++++|+|++||||+||.||||||+|++++|+++||+||+||+|+|++||||||+|||.+|
T Consensus 1 k~~~~W~~~~~~~~~~~~~~~~~~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~v 80 (601)
T PF00133_consen 1 KWQKFWEENKLFEKQLEKNKNKPKFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKV 80 (601)
T ss_dssp HHHHHHHHTTCCHHHHHCTTTSGEEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHH
T ss_pred CHhHHHhhCCCcccccccCCCCCcEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhH
Confidence 799999999999987 445688999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-HcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCceEEcC
Q 002136 148 EKMLA-AEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGS 226 (961)
Q Consensus 148 ek~l~-~~g~~~~~~~~~~f~~~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~ 226 (961)
|+.+. +.+.++.++++++|++.|++|++++.+.+++||++||+++||+|+|+|+||.|.++|+|+|.+|+++|||||+.
T Consensus 81 ek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIyr~~ 160 (601)
T PF00133_consen 81 EKKLGIKEKKDRKDLGREEFREECREWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIYRGK 160 (601)
T ss_dssp HHHTTTTSHHHCSCSTHHHHHHHHHHHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHhhcccccccccccccccchhhhcchhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEEeeC
Confidence 98773 33456788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCCccccccccccccCCCeEEEEEEEecCCCe-eEEEEecCCCccCCCcEEEECCC-----------------
Q 002136 227 YMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSD-FLTIATTRPETLFGDVALAVNPQ----------------- 288 (961)
Q Consensus 227 ~~v~w~p~~~t~lsd~Ev~~~e~~~~~~~~~~~~~~~~~-~l~v~TtrPeTl~g~~av~v~P~----------------- 288 (961)
++|+|||.|+|+|||+||+|++..+.++||+|++.+++. +|+|||||||||+||+||+|||+
T Consensus 161 ~pv~w~p~~~t~lsd~Ev~~~~~~~~~~~v~f~~~~~~~~~l~i~TtrPeTl~~~~ai~vnP~~~Y~~~~~~~i~~~~~~ 240 (601)
T PF00133_consen 161 KPVNWCPSCQTALSDHEVEYKEVKSPSIYVKFPLKDGEEVYLVIWTTRPETLPGNTAIAVNPDFDYVINGERYIVAKDLV 240 (601)
T ss_dssp EEEEEETTTTEEE-GGGEEEEEEEEEEEEEEEEESSSSEEEEEEEES-GGGGGG-BEEEE-TTSEEEETTEEEEEEHHHH
T ss_pred CCCCcCcccccchhhhhcccccccCceEEEEEEecCccceEEEEEechhhHHhCCeeEEECCCccceeCCeeehHHHHHH
Confidence 999999999999999999999999999999999988875 99999999999999999999999
Q ss_pred ------------CchhhhhccCeeeccCCCCCeeeeeecCccccCCCcceeEeCCCCChhHHHHHHHhCCCceeecCCCC
Q 002136 289 ------------DEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDG 356 (961)
Q Consensus 289 ------------~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~v~~~Pah~~~D~~~~~~~~l~~~~~~~~~G 356 (961)
+.++++|+|++|.||+ .++.+|||+++||++++|||+||+|||||++||+++++|+||+++++|++|
T Consensus 241 ~~~~~~~~~~~~~~~g~~L~g~~~~~P~-~~~~~~vi~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~~~l~~~~~id~~G 319 (601)
T PF00133_consen 241 EKLSKQEKTKLEDFRGKELVGLKYIHPL-TGREVPVIPDDFVDMDKGTGIVHSAPAHGPDDYEIGKKHNLPIINPIDEDG 319 (601)
T ss_dssp HHHHTTTSSSEEEEECHHHTTSEEE-TT-SSSSEEEEEETTS-SSSTTSEEEE-TTT-HHHHHHHHHHHHCCGCCCCCTS
T ss_pred HHHHhhhhhcccccCcceecCcEecccc-ccceeEEEcccccccccchhhhhhcccCCHHHHHHHhhcCceeeEecCCCc
Confidence 7788999999999999 589999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCchHHHHHHHHHHHHHcCCccccccccccCCcccCCCCceeeeeccceeeeccHHHHHHHHHHHcCCce
Q 002136 357 TLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELT 436 (961)
Q Consensus 357 ~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~qwF~~~~~~~~~~~~~~~~~~~~ 436 (961)
++++.+|.|.||++++||++|++.|+++|++++.++++|++|+|||||++|++++++||||++++++++++++++ +++
T Consensus 320 ~~~~~~~~~~G~~v~~ar~~ii~~L~~~g~l~~~~~~~~~~p~c~R~~~~ii~~~~~QWFi~~~~~k~~~l~~~~--~i~ 397 (601)
T PF00133_consen 320 RFTEEAGKFKGMKVFEAREKIIEDLKEKGLLLKIEEIEHSYPHCWRSGTPIIPRLTDQWFIKYDDWKKKALEALE--KIK 397 (601)
T ss_dssp TBBSCCSTTTTSBHHHHHHHHHHHHHHTTSEEEEEEEEEEEEEETTTSCBEEEEEEEEEEEEHHHHHHHHHHHHH--TSE
T ss_pred eEeecccccCCceeeeccHHHHHHHHHhhhhccccccccccceecCCCCEEEecccceeEEecHHhHHHHHhhcc--cce
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998 799
Q ss_pred eechhHHHHHHHHHhcCCCceeeeccCCCcccceEEEcCCcccEEEecChHHHHHHH--------------Hhhc-CCCc
Q 002136 437 IMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKA--------------HQKY-GKNV 501 (961)
Q Consensus 437 ~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~-~~~~ 501 (961)
|+|+..+++|.+||++++||||||||+||||||+|+|+. ++...+..+..+..... .+.+ ..+.
T Consensus 398 ~~P~~~~~~~~~~i~~l~DWcISRQR~WG~PIPiw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (601)
T PF00133_consen 398 FYPESYRKRFENWIDNLRDWCISRQRYWGTPIPIWYCED-CGEVLVIESTIELIADRVEKEGIDAWLHKPAEDKLPCCGG 476 (601)
T ss_dssp ESSSTCHHHHHHHHHT--EEE-EESSSSSEBETEEEETT-SEEEECCGGHHHHHHHHSTHHHHSCTSSHHHHHHHTTTSS
T ss_pred EEcccchhhhhhhccccccchhhccCCCCccceeeeccc-Cccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999975 34444433222221110 0011 2344
Q ss_pred ccccCCCceeeeecCCCccccccCCCCCChhHHhhcCCcceEeeeccccccHHHHHHHHHhHhcCCCCceEEEEeceEEc
Q 002136 502 EIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRD 581 (961)
Q Consensus 502 ~~~~~~dvldtWf~S~l~~~~~~~~p~~~~~~~~~~~P~d~~~~G~Dil~fw~~~~i~~~~~l~~~~Pfk~v~~hg~v~d 581 (961)
.++|++||||||||||+||++.++||.+.+.+|++|||+|++++|+||+++|+++|++.+.++.++.||++|++||+|+|
T Consensus 477 ~~~~~~dvlD~WfdSg~~~~~~~~~~~~~~~~~~~~~P~D~~~~G~D~~~~W~~~~l~~~~~l~~~~pfk~v~~hG~vld 556 (601)
T PF00133_consen 477 ELRRDTDVLDTWFDSGLWPFAVLGWPENDREEFEYWYPVDLYIEGKDQIRGWFQSSLFLSVALFGKEPFKKVITHGFVLD 556 (601)
T ss_dssp EEEEHS-EE-HHHHHCTCHHHHTTSTTCSCHHHHHHSSBSEEEEEGGGTTTHHHHHHHHHHHHSSSTSBSEEEEE--EEE
T ss_pred ceEEeeeeccccccccCCcccccccccccchhccccCCcccccCCccchhhHHHHhHhhccccccCCchheeeecccccc
Confidence 68899999999999999999999999986689999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCCCccCchhhhhhcChhHHHHHHHhCCC-CCccccC
Q 002136 582 SQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLS 625 (961)
Q Consensus 582 ~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~~~-~~D~~f~ 625 (961)
.+|+|||||+||||+|.++|++||||++|||+++++. ++|++||
T Consensus 557 ~~G~KMSKS~GNvi~p~~ii~~yGaD~lRl~~~~~~~~~~D~~~s 601 (601)
T PF00133_consen 557 EDGRKMSKSKGNVIDPEDIIEKYGADALRLWLASSADPGQDINFS 601 (601)
T ss_dssp TTSSB-BTTTTB--BHHHHHHHT-HHHHHHHHHHHS-TTS-EEE-
T ss_pred cceeecccCCCcccCHHHHHHHhCcHHHHHHHHhcCCcccCcccC
Confidence 9999999999999999999999999999999996555 9999997
No 21
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.1e-133 Score=1245.18 Aligned_cols=671 Identities=27% Similarity=0.450 Sum_probs=579.2
Q ss_pred CCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHH----------H-cCCCccccCHHHHHHHHHHH
Q 002136 105 LHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLA----------A-EGIKRVELSRDEFTKRVWEW 173 (961)
Q Consensus 105 LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~----------~-~g~~~~~~~~~~f~~~~~~~ 173 (961)
|||||+++++++|+++||+||+||+|+|++||||||+|||.++++... + .|+++.++ ++|. .+++|
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i--~~f~-~~~~~ 77 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEEL--EKFK-DPEYI 77 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHH--HHhc-CHHHH
Confidence 799999999999999999999999999999999999999999876321 1 25555444 3453 47999
Q ss_pred HHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCceEEcCeeeecCCCCCccccccccccccCC--C
Q 002136 174 KEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEP--G 251 (961)
Q Consensus 174 ~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~w~p~~~t~lsd~Ev~~~e~~--~ 251 (961)
+++|.+.+++||++||+++||+|+|+|+||.|.++|+|+|.+|+++||||||.++|+|||.|+|+|||+|+.+.+.. +
T Consensus 78 ~~~~~~~~~~~~~~lG~~~DW~r~y~T~dp~y~~~v~w~F~~L~ekGliyrg~~~v~wcp~~~t~lad~e~~~~e~~~~~ 157 (897)
T PRK12300 78 VEYFSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVKGSHPVRYCPNDNNPVGDHDLLDGEEPEIV 157 (897)
T ss_pred HHHhHHHHHHHHHHhCcEEeCCCCeECCChhHHHHHHHHHHHHHHCCCEecCCEeeeeCCCCCCCchHHHHhcCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987655 4
Q ss_pred eEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCc---------------------hhh-------------hhcc
Q 002136 252 TLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDE---------------------HYS-------------QFIG 297 (961)
Q Consensus 252 ~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~---------------------~y~-------------~l~g 297 (961)
..+||+|+ .+++.+++|||||||||+|++||||||+++ +|+ +|+|
T Consensus 158 ~~~~ikf~-~~~~~~l~~~TtrPeTl~g~tai~V~P~~~Y~~~~~~~e~~i~a~~~~~~~~~~~~~~~~~~~~~G~~l~G 236 (897)
T PRK12300 158 EYTLIKFE-ESEDLILPAATLRPETIFGVTNLWVNPDATYVKAEVDGEKWIVSKEAAEKLSFQDRDVEIIEEIKGSELIG 236 (897)
T ss_pred eEEEEEEe-CCCceEEEEEECCcchhccceEEEECCCCcEEEEEECCEEEEEeHHHHHHHhcCcCCceEEEEeehHHhcC
Confidence 45789998 555689999999999999999999999997 354 7999
Q ss_pred CeeeccCCCCCeeeeeecCccccCCCcceeEeCCCCChhHHHHHHHhC--------CCceeec-----------------
Q 002136 298 MMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLG--------LPILNVM----------------- 352 (961)
Q Consensus 298 ~~~~~P~~~~~~ipii~~~~V~~~~GTG~v~~~Pah~~~D~~~~~~~~--------l~~~~~~----------------- 352 (961)
+++.||++ ++.+||++++||++++|||+||+|||||++||+++++++ |+++.++
T Consensus 237 ~~~~~Pl~-~~~ipil~~~~V~~~~GTGvV~~~Pah~~~Dy~~~~~~~~~~~~~~~l~~i~ii~v~~~g~~~a~~~~~~~ 315 (897)
T PRK12300 237 KKVKNPVT-GKEVPILPADFVDPDNGTGVVMSVPAHAPYDYVALRDLKKNKELLDVIEPIPLIEVEGYGEFPAKEVVEKL 315 (897)
T ss_pred CEEECCCC-CCeEEEeccCeeecCCCeeeEEeCCCCCHHHHHHHHHhccccccccccCCcceEecCCcCcccHHHHHHHh
Confidence 99999995 789999999999999999999999999999999999998 7654444
Q ss_pred ------C---------------CCCcccccccccCCCchHHHHHHHHHHHHHcCCccccccccccCCcccCCCCceeeee
Q 002136 353 ------N---------------KDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLV 411 (961)
Q Consensus 353 ------~---------------~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~ 411 (961)
| .+|+|++.+|.|+|++++|||++|++.|+++|++++.+.+.|. |+|+|||++|+.+.
T Consensus 316 ~~~~~~d~~l~~a~~~~y~~~f~~G~~~~~~g~~~G~~v~eA~~~I~~~L~~~g~~~~~~~~~~~-~~~~R~~~~~i~~~ 394 (897)
T PRK12300 316 GIKSQEDPELEEATKEVYRAEFHKGVLKENTGEYAGKPVREAREKITKDLIEKGIADIMYEFSNR-PVYCRCGTECVVKV 394 (897)
T ss_pred CCCCccchhHHHHHHHhhhccccceEEeecccCcCCeEHHHHHHHHHHHHHHCCCeEEEEecCCC-CcCcCCCCEEEEEe
Confidence 3 4899999999999999999999999999999999999888884 67779999999875
Q ss_pred -ccceeeecc--HHHHHHHHHHHcCCceeechhHHHHHHHHHhcCCCceeeeccCCCcccce---EEEcCCccc--EEEe
Q 002136 412 -SKQWFVTME--PLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPV---WYIVGKEEE--YIVA 483 (961)
Q Consensus 412 -~~qwF~~~~--~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~pIP~---~~~~~~~~~--~~~~ 483 (961)
++||||+++ +++++++++++ +++|+|+..++++.+||++++||||||||+||||||+ |.+++.++. |+..
T Consensus 395 ~~~QWFi~~~~~~~k~~~~~~~~--~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WGtpiP~~~~w~~esl~ds~iY~~~ 472 (897)
T PRK12300 395 VKDQWFIDYSDPEWKELAHKALD--NMEIIPEEYRKEFENTIDWLKDRACARRRGLGTRLPWDEEWIIESLSDSTIYMAY 472 (897)
T ss_pred cCCceEEEcCcHHHHHHHHHHHc--cCEEECHHHHHHHHHHHhhhhhcceeeccccCCcCCccCCEEeeeccccchhhhH
Confidence 699999998 79999999995 6999999999999999999999999999999999996 777653332 3333
Q ss_pred cChHHHHHHHHhhcCCC-cccccCCCceeeeecCCCcc---ccccCCCCCC----hhHHhhcCCcceEeeeccccccHHH
Q 002136 484 RNADEALEKAHQKYGKN-VEIYQDPDVLDTWFSSALWP---FSTLGWPDVS----ADDFKKFYPTTMLETGHDILFFWVA 555 (961)
Q Consensus 484 ~~~~~~~~~~~~~~~~~-~~~~~~~dvldtWf~S~l~~---~~~~~~p~~~----~~~~~~~~P~d~~~~G~Dil~fw~~ 555 (961)
.+..+.+.. +|-+ ..+ .++++|+||.++..+ ....|||... +++|++|||+|++++|+||++||..
T Consensus 473 ~~i~~~l~~----~g~~~~~l--~~~~~D~~~~~~~~~~~~~~~sg~p~~~~~~~~~~f~~~~P~D~~~~GkDii~~Hl~ 546 (897)
T PRK12300 473 YTIAHKIRE----YGIKPEQL--TPEFFDYVFLGKGDPEEVSKKTGIPKEILEEMREEFLYWYPVDWRHSGKDLIPNHLT 546 (897)
T ss_pred HHHHHHHHH----cCCChHHC--ChhhCceEEeCCCccccCchhcCCCHHHHHHHHHHHhccCCceEEEeeeccCccHHH
Confidence 333222221 1100 011 346777777654322 2234565542 4679999999999999999999988
Q ss_pred HHHHHHhHhcCCCCc-eEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHhCCC-CCccccCHHHHHHHH
Q 002136 556 RMVMMGIEFTGSVPF-SHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTANK 633 (961)
Q Consensus 556 ~~i~~~~~l~~~~Pf-k~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~~~-~~D~~f~~~~~~~~~ 633 (961)
++++++.++.+..|+ ++|++||||++ +|+|||||+||+|+|.++|++||||++||||++.++ ++|++|+++.+.+..
T Consensus 547 ~~~~~~~a~~~~~~~Pk~v~~hG~vl~-~G~KMSKS~GNvVdp~eii~~yGaDalRl~L~~~~~~~~D~~fs~~~v~~~~ 625 (897)
T PRK12300 547 FFIFNHVAIFPEEKWPRGIVVNGFVLL-EGKKMSKSKGNVIPLRKAIEEYGADVVRLYLTSSAELLQDADWREKEVESVR 625 (897)
T ss_pred HHHHHHHHhcCCCccCcEEEEcceEEE-CCccccCcCCCCCCHHHHHHHcChHHHHHHHHhCCCCCCCCccCHHHHHHHH
Confidence 888888888887777 89999999997 999999999999999999999999999999999777 999999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHH
Q 002136 634 AFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDF 713 (961)
Q Consensus 634 ~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~i~~f 713 (961)
++++++||+++++.+... . ..+...|+|++++++.++++++++|++|+|+.|+++++.|
T Consensus 626 ~~l~r~~~~~~~~~~~~~---~------------------~~~~~~D~wils~l~~~i~~v~~~~e~~~~~~A~~~i~~~ 684 (897)
T PRK12300 626 RQLERFYELAKELIEIGG---E------------------EELRFIDKWLLSRLNRIIKETTEAMESFQTRDAVQEAFYE 684 (897)
T ss_pred HHHHHHHHHHHHHhcCCC---c------------------cccCHhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999999999988764321 0 1234579999999999999999999999999999999877
Q ss_pred HHHhhhHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhcCCCCceeecCCCCCCC-CCC
Q 002136 714 FWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQTSL-PRH 792 (961)
Q Consensus 714 ~~~~~~n~Yle~~K~~l~~~~~~~~~~~~~~~l~~vl~~~l~LL~Pf~P~itEeiw~~L~~~~~si~~~~wP~~~~-~~d 792 (961)
+++ .+|||++.+++ +++.+++++++.+++||+|||||+||+||+.|+.+ +||+.++||+++. +.|
T Consensus 685 l~~-~~n~Yi~~~k~------------~~~~~l~~~l~~~~~lLaPf~P~~aEeiw~~L~~~-~sv~~~~wP~~~~~~~d 750 (897)
T PRK12300 685 LLN-DLRWYLRRVGE------------ANNKVLREVLEIWIRLLAPFTPHLAEELWHKLGGE-GFVSLEKWPEPDESKID 750 (897)
T ss_pred HHH-HHHHHHHhcch------------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCCC-CeEEeCCCCCCCcccCC
Confidence 754 57999998765 35678999999999999999999999999999864 6999999999885 679
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhcccCCCceeeE
Q 002136 793 MSAIKRFENLQSLTRAIRNARAEYSVEPAKRISA 826 (961)
Q Consensus 793 ~~~~~~~~~~~~~v~~ir~~r~~~~i~~~~~~~~ 826 (961)
+.+++.++.++++++.+|++|+..+++++ ++.+
T Consensus 751 ~~~~~~~~~~~~~i~~ir~~~~~~~~~~~-~~~i 783 (897)
T PRK12300 751 EEAELAEEYVKRLIEDIREILKVAKIKPK-KVYI 783 (897)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCc-eEEE
Confidence 99999999999999999999999999773 3443
No 22
>PLN02563 aminoacyl-tRNA ligase
Probab=100.00 E-value=5.6e-132 Score=1217.77 Aligned_cols=686 Identities=27% Similarity=0.430 Sum_probs=551.6
Q ss_pred hhcccCCCCCCCCCCCh-hhHHHHHHHHHhCCCCCCCC--CCCCCCEEEeCCCCCcCCC-CCCchhhHhHHHHHHHHHHH
Q 002136 49 VAAAENNKDTLPKTFDF-TSEERIYNWWESQGYFKPNF--ERGSDPFVISMPPPNVTGS-LHMGHAMFVTLEDIMVRYHR 124 (961)
Q Consensus 49 ~~~~~~~~~~~~~~~~~-~~E~~~~~~W~~~~~f~~~~--~~~~~~f~i~~ppPy~nG~-LHiGHa~~~~~~Di~~R~~r 124 (961)
......+...+++.||| ++|++||++|+++++|+... +.++++|+++++||||||. |||||+++++++|+++||+|
T Consensus 66 ~~~~~~~~~~~~~~y~~~~iE~kwq~~W~e~~~f~~~~~~~~~k~k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~R 145 (963)
T PLN02563 66 TSTTAKTTPAAKRAYPFHEIEPKWQRYWEENRTFRTPDDVDTSKPKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKR 145 (963)
T ss_pred hhhhhhcccccCCCCCHHHHHHHHHHHHHhCCCccccccccCCCCCEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHH
Confidence 34555667789999999 89999999999999999765 4467889999999999997 99999999999999999999
Q ss_pred HcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChh
Q 002136 125 MKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQ 204 (961)
Q Consensus 125 m~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~ 204 (961)
|+||+|+|++||||||+|+|.++ .+.|+++. .|+.++++.|++||++||+++||+|+++|+||+
T Consensus 146 m~G~~Vl~~~G~D~~GlPiE~~a----~~~g~~p~------------~~~~~~i~~~~~q~~~lG~s~DW~r~~~T~dp~ 209 (963)
T PLN02563 146 MQGYNVLHPMGWDAFGLPAEQYA----IETGTHPK------------ITTLKNIARFRSQLKSLGFSYDWDREISTTEPE 209 (963)
T ss_pred hcCCeecccccccccCcHHHHHH----HHcCCChH------------HhHHHHHHHHHHHHHHhCcEeeCCCCeecCCHH
Confidence 99999999999999999977554 44676654 467889999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCceEEcCeeeecCCCCCccccccccccc--cCCCe------------------------------
Q 002136 205 LSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYS--EEPGT------------------------------ 252 (961)
Q Consensus 205 ~~~~v~~~F~~L~~~GlIy~~~~~v~w~p~~~t~lsd~Ev~~~--e~~~~------------------------------ 252 (961)
|++++||+|.+||++||||+++++|+|||.|+|+||++||++. +..|.
T Consensus 210 y~~~~q~~F~~L~~~GliY~~~~~v~wcp~~~T~La~~Ev~~~~~~~~~~~~~~~~~~q~f~~it~ya~~L~~~l~~~~w 289 (963)
T PLN02563 210 YYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGLSERGGHPVIRKPMRQWMLKITAYADRLLEDLDDLDW 289 (963)
T ss_pred HHHHHHHHHHHHHHCCCEEeeeeeeeecCCcCCCCCHHHhhcCCCcCCCCceEEEecceeEEecchhHHHHHHhhhhcCC
Confidence 9999999999999999999999999999999999999999873 33332
Q ss_pred ----------------EEEEEEEecCC-----CeeEEEEecCCCccCCCcEEEECCCCc---------------hhhh--
Q 002136 253 ----------------LYYIKYRVAGR-----SDFLTIATTRPETLFGDVALAVNPQDE---------------HYSQ-- 294 (961)
Q Consensus 253 ----------------~~~~~~~~~~~-----~~~l~v~TtrPeTl~g~~av~v~P~~~---------------~y~~-- 294 (961)
.++|+|++.++ +.+|+|||||||||+|+++|+|||+++ +|.+
T Consensus 290 p~~v~~~q~nwiG~s~g~~i~F~~~~~~~~~~~~~l~V~TTrPeTl~g~t~iav~p~~~yv~~~~~~~~~~~v~~y~~~~ 369 (963)
T PLN02563 290 PESIKEMQRNWIGRSEGAELDFSVLDGEGKERDEKITVYTTRPDTLFGATYLVVAPEHPLLSSLTTAEQKEAVEEYVDAA 369 (963)
T ss_pred CHHHHHHHHHhccccceEEEEEEecCccccCCCCEEEEEeCCChHHhhccEEEECCCChhhHhhhcccchHHHHHHHHHH
Confidence 47889998752 468999999999999999999999995 3322
Q ss_pred ------------------hccCeeeccCCCCCeeeeeecCccccCCCcceeEeCCCCChhHHHHHHHhCCCceeecCC--
Q 002136 295 ------------------FIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNK-- 354 (961)
Q Consensus 295 ------------------l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~v~~~Pah~~~D~~~~~~~~l~~~~~~~~-- 354 (961)
+.|.+++||+ .++.+||+.++||++++|||+||+|||||++||++|++||||++++++.
T Consensus 370 ~~~~~~~~~~~~~~k~g~~~g~~~~~P~-~~~~iPI~~ad~V~~~~GTGaVm~~PaHd~~D~~~a~k~~Lpi~~vI~~~d 448 (963)
T PLN02563 370 SRKSDLERTELQKEKTGVFTGSYAINPA-TGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDFEFAQKFDLPIKWVVKPAD 448 (963)
T ss_pred hchhHHhhhhccceecccccCcEEeccC-CCCeeEEEEecccCCCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeccCc
Confidence 4699999999 5899999999999999999999999999999999999999999999942
Q ss_pred ------------CCcccccccc----cCCCchHHHHHHHHHHHHHcCCccccccccccCCcccCCCCceeeeeccceeee
Q 002136 355 ------------DGTLNEVAGL----FRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVT 418 (961)
Q Consensus 355 ------------~G~~~~~~g~----~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~qwF~~ 418 (961)
+|.+. +.|. |.||.++||+++|+++|++.|++.+
T Consensus 449 ~~~~~~~~~y~~~G~l~-ns~~~~~~~~Gl~~~eA~~~Ii~~L~~~g~~~~----------------------------- 498 (963)
T PLN02563 449 GNEDDAEKAYTGEGVIV-NSSSSGLDINGLSSKEAAKKVIEWLEETGNGKK----------------------------- 498 (963)
T ss_pred cccccccccccCceeEe-cCCCcccccCCcCHHHHHHHHHHHHHhCCCCCC-----------------------------
Confidence 24333 2344 9999999999999999999998632
Q ss_pred ccHHHHHHHHHHHcCCceeechhHHHHHHHHHhcCCCceeeeccCCCcccceEEEcCCcccEEEecChHHH---------
Q 002136 419 MEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEA--------- 489 (961)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~--------- 489 (961)
+++| +++|||||||||||+|||+|+|+. ++..+... ++++
T Consensus 499 ---------------~v~y--------------~lrDW~ISRQRyWG~PIPi~~c~~-cg~~v~v~-e~~Lpv~lpe~~~ 547 (963)
T PLN02563 499 ---------------KVNY--------------KLRDWLFARQRYWGEPIPVVFLED-SGEPVPVP-ESDLPLTLPELDD 547 (963)
T ss_pred ---------------eeEe--------------cCCCceEeeecccCCceEEEEEcC-CCcEEecc-hHhCcccchhhhh
Confidence 1222 579999999999999999999964 44333221 1111
Q ss_pred ----------HHHHHh----hc-CCCcccccCCCceeeeecCCCccccccCCCCCCh-----hHHhhcCCcceEeeeccc
Q 002136 490 ----------LEKAHQ----KY-GKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSA-----DDFKKFYPTTMLETGHDI 549 (961)
Q Consensus 490 ----------~~~~~~----~~-~~~~~~~~~~dvldtWf~S~l~~~~~~~~p~~~~-----~~~~~~~P~d~~~~G~Di 549 (961)
+....+ .| ..+..++|++|||||||+|+ |||..+.||.++. +.+++|||+|++++|.|+
T Consensus 548 ~~~~~~g~~pl~~~~~~~~~~~p~cg~~~~RetDtmDtw~~Ss-wy~~r~~~p~~~~~~~~~~~~~~w~PvD~yigG~dh 626 (963)
T PLN02563 548 FTPTGTGEPPLAKAVSWVNTVDPSSGKPARRETNTMPQWAGSC-WYYLRFMDPKNSNALVDKEKEKYWMPVDLYVGGAEH 626 (963)
T ss_pred cccCCCCCCchhcchhhhcCcCcCCCCCcEECCCcCCchhhcc-HHHHHHhCCCccccccCHHHHhCcCCCcEeeccHHH
Confidence 000000 01 01345899999999999997 8899889998642 345689999999999998
Q ss_pred c-------ccHHHHHHHHHhHhcCCCCceEEEEeceEEc---------CCCc----------------------------
Q 002136 550 L-------FFWVARMVMMGIEFTGSVPFSHVYLHGLIRD---------SQGR---------------------------- 585 (961)
Q Consensus 550 l-------~fw~~~~i~~~~~l~~~~Pfk~v~~hg~v~d---------~~G~---------------------------- 585 (961)
. |||+.+|..+|+ ..++.||++|++||||+| .+|+
T Consensus 627 ailHLlY~Rfw~~~l~~~g~-~~~~ePfk~ll~qGmVl~~~~~~~~~d~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (963)
T PLN02563 627 AVLHLLYARFWHKVLYDIGV-VSTKEPFQCLVNQGMILGEVEYTAFKDSDGEYVSADTADRLGELQQEKIPEEKVIKSGD 705 (963)
T ss_pred HhhHhHHHHHHHHHHHHhhc-cCCcccHHHHhccceeecCccccceecCCCcCccccccccccccccccccccccccccc
Confidence 4 899999999998 477999999999999997 7777
Q ss_pred -----------------cccccCCCccCchhhhhhcChhHHHHHHHhCCC-CCccccCHHHHHHHHHHHHHHHHHHHHHH
Q 002136 586 -----------------KMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTANKAFTNKLWNAGKFIL 647 (961)
Q Consensus 586 -----------------KMSKS~GNvI~p~dii~~yGaDalR~~L~~~~~-~~D~~f~~~~~~~~~~~~nkl~N~~rf~~ 647 (961)
|||||+||||+|.++|++||||++|||+++.++ .+|..|+.+.+.+.++|++++||++....
T Consensus 706 ~~~~~~~~~~~~~~~~eKMSKSKGNvVdP~eiI~kYGADaLRl~ll~~ap~~dd~~w~~~~V~g~~rfL~rlwn~~~~~~ 785 (963)
T PLN02563 706 SFVLKDDPSIRLIARAHKMSKSRGNVVNPDDVVSEYGADSLRLYEMFMGPLRDSKTWSTSGVEGVHRFLGRTWRLVVGAP 785 (963)
T ss_pred ccccccCCcccccccccccccccCCcCCHHHHHHHcCcHHHHHHHHhCCCcccccccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999888 99999999999999999999999875432
Q ss_pred hhCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhhHHHHHHhh
Q 002136 648 QNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASK 727 (961)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~i~~f~~~~~~n~Yle~~K 727 (961)
.+...+.. . ........|+|++++++.++++|+++|++|+|+.|++++++|++ .+++|+
T Consensus 786 ~~~~~~~~-------------~--~~~~~~~~d~~ll~kl~~~ikkVte~~e~y~FntAi~~lmef~n-~l~~~~----- 844 (963)
T PLN02563 786 LPDGSFRD-------------G--TVVTDEEPSLEQLRLLHKCIAKVTEEIESTRFNTAISAMMEFTN-AAYKWD----- 844 (963)
T ss_pred hcccccCc-------------c--ccccCCcchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHhCch-----
Confidence 11101110 0 00111246899999999999999999999999999999999984 443211
Q ss_pred hhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhcCCCCceeecCCCCCCCCCChHHHHHHHHHHHHHH
Q 002136 728 ARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQTSLPRHMSAIKRFENLQSLTR 807 (961)
Q Consensus 728 ~~l~~~~~~~~~~~~~~~l~~vl~~~l~LL~Pf~P~itEeiw~~L~~~~~si~~~~wP~~~~~~d~~~~~~~~~~~~~v~ 807 (961)
.+..++++.+++||+|||||+|||||+.|+.. +||+.++||++++ ..... +.+
T Consensus 845 ----------------~~~~~~l~~ll~LLaPf~PhiaEELW~~Lg~~-~sv~~~~WP~~d~----~~l~~-~~~----- 897 (963)
T PLN02563 845 ----------------KVPREAIEPFVLLLSPYAPHLAEELWFRLGHS-NSLAYEPWPEANP----SYLVD-DTV----- 897 (963)
T ss_pred ----------------HHHHHHHHHHHHHHHhhhhhHHHHHHHHcCCC-CeeeeCCCCCCCH----HHhhc-Cce-----
Confidence 03457899999999999999999999999864 6899999999762 11100 001
Q ss_pred HHHhhhhhcccCCCceeeEEEE-----cCHHHHHHHHhHHHHHHHHcCCccccEEeecCCCCCCCCcEEEEec
Q 002136 808 AIRNARAEYSVEPAKRISASIV-----ANEEVIQYISKEKEVLALLSRLDLLNVHFTESPPGDANQSVHLVAS 875 (961)
Q Consensus 808 ~ir~~r~~~~i~~~~~~~~~i~-----~~~~~~~~~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~v~~~v~ 875 (961)
++.|.-+.++...|. +.+++.+.+.+...+.+.|.+.+..++.++ |++.+++++.
T Consensus 898 -------~~~vqiNGK~r~~i~v~~~~~~~~i~~~a~~~~~v~~~l~~k~i~K~I~v------p~kivNiV~~ 957 (963)
T PLN02563 898 -------VLPVQINGKTRGTIEVEEGCSEDDAFALASQDEKLSKYLDGKEIKKRIYV------PGKILNVILK 957 (963)
T ss_pred -------EEEEEECCEEeeEEEeCCCCCHHHHHHHHhcCHHHHHHhCCCCceEEEEE------CCcEEEEEeC
Confidence 222222233333322 223344555555667777877777788775 5678887773
No 23
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=100.00 E-value=8.4e-132 Score=1217.38 Aligned_cols=679 Identities=27% Similarity=0.438 Sum_probs=551.1
Q ss_pred CCh-hhHHHHHHHHHhCCCCCCCCCCCCCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCc
Q 002136 63 FDF-TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGI 141 (961)
Q Consensus 63 ~~~-~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl 141 (961)
||| ++|++||++|+++++|++..+.++++|+++++||||||.|||||+++++++|+++||+||+||+|+|++||||||+
T Consensus 1 y~~~~iE~kwq~~W~~~~~f~~~~~~~k~k~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Gl 80 (842)
T TIGR00396 1 YNHIEIEEKWQQKWKENKVFKFTDDSNKPKYYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGL 80 (842)
T ss_pred CCHHHHHHHHHHHHHhcCCcccCCCCCCCCEEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCCh
Confidence 788 8999999999999999987766778899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCc
Q 002136 142 ATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGL 221 (961)
Q Consensus 142 ~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~Gl 221 (961)
|+|.+++ +.|+++. +|+.++++.|++||++||+++||+++|.|+||+|.+++||+|.+|+++|+
T Consensus 81 pie~~a~----~~g~~p~------------~~~~~~~~~~~~~~~~lG~~~Dw~~~~~T~d~~y~~~~~~~F~~L~~kGl 144 (842)
T TIGR00396 81 PAENAAI----KRGIHPA------------KWTYENIANMKKQLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKGL 144 (842)
T ss_pred HHHHHHH----HcCCCHH------------HHHHHHHHHHHHHHHHhCCcccCCCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence 9877654 4577653 57889999999999999999999999999999999999999999999999
Q ss_pred eEEcCeeeecCCCCCcccccccccccc---C-----------------------------------------------CC
Q 002136 222 IYQGSYMVNWSPNLQTAVSDLEVEYSE---E-----------------------------------------------PG 251 (961)
Q Consensus 222 Iy~~~~~v~w~p~~~t~lsd~Ev~~~e---~-----------------------------------------------~~ 251 (961)
||++.++|+|||.|+|+|||+||++.. . .+
T Consensus 145 iy~~~~~v~wcp~~~t~La~~ev~~~g~~~~~g~~v~~~~~~~~f~~i~~~~~~l~~~l~~~~~wp~~v~~~q~~wig~s 224 (842)
T TIGR00396 145 AYVKEADVNWCPNDGTVLANEQVDSDGRSWRGGTPVEKKELKQWFLKITAYAEELLNDLEELDHWPESVKEMQRNWIGKS 224 (842)
T ss_pred eEeeccceEEeCCCCCCccHHHHhhcCccccCCCcceEeecceeEEehhhhHHHHHHHHhhhccccHHHHHHHHhccccc
Confidence 999999999999999999999995321 1 13
Q ss_pred eEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCchhhh---------------------------------hccC
Q 002136 252 TLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQ---------------------------------FIGM 298 (961)
Q Consensus 252 ~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~y~~---------------------------------l~g~ 298 (961)
..++|+|++.+++.+|+|||||||||+|++||||||+++++.. ++|+
T Consensus 225 ~g~~i~f~~~~~~~~l~v~TTrP~Tl~g~~~iav~p~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 304 (842)
T TIGR00396 225 EGVEITFKIADHKEKIAVFTTRPDTIFGVTYLALAPEHPLVEKIAENNPKVAAFIKKILQKTTTERTKETKLKKGVFTGI 304 (842)
T ss_pred ceEEEEEEcCCCCCEEEEEeCCcHHhhhccEEEECCCCHHHHhhhcchHHHHHHHHHHhccCchhhhhhhcccccEecCC
Confidence 3578899998766799999999999999999999999975422 7899
Q ss_pred eeeccCCCCCeeeeeecCccccCCCcceeEeCCCCChhHHHHHHHhCCCceeecCC------------CCcccccccccC
Q 002136 299 MAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNK------------DGTLNEVAGLFR 366 (961)
Q Consensus 299 ~~~~P~~~~~~ipii~~~~V~~~~GTG~v~~~Pah~~~D~~~~~~~~l~~~~~~~~------------~G~~~~~~g~~~ 366 (961)
+++||+ .++.+||+.++||++++|||+||+|||||++||++|++||||++++++. +|++++ .|.|.
T Consensus 305 ~~~~P~-~~~~ipi~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~k~~L~i~~vi~~~~~~~~~~~~~~~G~~~~-~~~~~ 382 (842)
T TIGR00396 305 KAIHPL-TGEKIPIWVANYVLASYGTGAVMGVPAHDERDFEFAQKYKLPIKVVIDPAGKNLKTQAFTEDGVLVN-SGEFN 382 (842)
T ss_pred EEECCC-CCCEeEEEEeCcccCCCCCCeEEEcCCCCHHHHHHHHHhCCCcceeeCCcccccccccccCCceEec-chhcC
Confidence 999999 5899999999999999999999999999999999999999999999983 677774 58999
Q ss_pred CCchHHHHHHHHHHHHHcCCccccccccccCCcccCCCCceeeeeccceeeeccHHHHHHHHHHHcCCceeechhHHHHH
Q 002136 367 GLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIY 446 (961)
Q Consensus 367 G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~ 446 (961)
||++.+||++|++.|+++|++.+. + .+
T Consensus 383 Gl~~~~A~~~Ii~~L~~~g~~~~~----------------v----------------------------~y--------- 409 (842)
T TIGR00396 383 GLNSSEAREAIIAMLEKEGKGKRK----------------V----------------------------NY--------- 409 (842)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCce----------------E----------------------------Ee---------
Confidence 999999999999999999985321 1 11
Q ss_pred HHHHhcCCCceeeeccCCCcccceEEEcCCcccEEEecCh-----HH----------HHHHHH-------hhcCCCcccc
Q 002136 447 NHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNA-----DE----------ALEKAH-------QKYGKNVEIY 504 (961)
Q Consensus 447 ~~wl~~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~-----~~----------~~~~~~-------~~~~~~~~~~ 504 (961)
+++|||||||||||+|||+|||+. ++.+.+..+. .+ ++.... +.|| ..++
T Consensus 410 -----rlrDW~ISRQRyWG~PIPi~~~~~-~g~~~v~~~~lp~~l~~~~~~~~~~~~pl~~~~~~~~~~cp~cg--~~~~ 481 (842)
T TIGR00396 410 -----RLRDWLFSRQRYWGEPIPIIHCED-GGAVPVPEEDLPVILPELVNYDPDGNSPLSRIQEWVNVTCPSCG--KPAL 481 (842)
T ss_pred -----ecccceeecccccCCceEEEEECC-CCeEeCcchhcchhhhhhhhccCCCCCchhhhhhhhcCcCccCC--CCcE
Confidence 478999999999999999999963 3433322210 00 000010 1223 3588
Q ss_pred cCCCceeeeecCCCccccccCCCCCC-----hhHHhhcCCcceEeeeccc--cccHHHHHHHHHh----HhcCCCCceEE
Q 002136 505 QDPDVLDTWFSSALWPFSTLGWPDVS-----ADDFKKFYPTTMLETGHDI--LFFWVARMVMMGI----EFTGSVPFSHV 573 (961)
Q Consensus 505 ~~~dvldtWf~S~l~~~~~~~~p~~~-----~~~~~~~~P~d~~~~G~Di--l~fw~~~~i~~~~----~l~~~~Pfk~v 573 (961)
|++|||||||||| ||+..+.||... +++|++|||+|++++|.|+ +|+|++|+....+ .+.++.||++|
T Consensus 482 retDtmDtw~dSs-wy~~r~~~p~~~~~~~~~~~~~~~~PvD~yi~G~dhailHLlyaRf~~~~l~~~~~~~~~~Pfk~l 560 (842)
T TIGR00396 482 RETDTMDTFAGSS-WYYLRYLDPKNTDQPFDKEKAEYWLPVDLYIGGAEHAILHLLYARFWHKFLYDIGYVSTKEPFKKL 560 (842)
T ss_pred eCCCCCCCcccCC-HHHHHhhCCCCcCCCcChHHHhccCCCcEeeccHHHHHHHHHHHHHHHHHHHhccccCCCccHHHH
Confidence 9999999999998 999888777642 3679999999999999985 4555555532222 24678999999
Q ss_pred EEeceEEc----CCCc---------------------------cccccCCCccCchhhhhhcChhHHHHHHHhCCC-CCc
Q 002136 574 YLHGLIRD----SQGR---------------------------KMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQD 621 (961)
Q Consensus 574 ~~hg~v~d----~~G~---------------------------KMSKS~GNvI~p~dii~~yGaDalR~~L~~~~~-~~D 621 (961)
++||||+| .+|+ |||||+||+|+|.++|++||||++|||+++.++ .+|
T Consensus 561 ~~~G~Vl~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~KMSKS~GN~v~p~~ii~~ygaDalRl~~l~~~~~~~d 640 (842)
T TIGR00396 561 INQGMVLGFYYPPNGKSPPDELTERDEKAKDKSGGELVVVGYEKMSKSKGNGIDPQEIVKKHGADALRLYIMFMGPIAAS 640 (842)
T ss_pred hccceEEeeeecCCCCccChhhhccccccccccCCcccccchhhhhhcCCCcCCHHHHHHHcCchHHHHHHHhcCCcCCC
Confidence 99999999 8998 999999999999999999999999999997766 999
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhhhcC
Q 002136 622 LSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKY 701 (961)
Q Consensus 622 ~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~ 701 (961)
++|+.+.+++.++++++|||+++++.+++.+... .....++..|+|++++++.++++|+++|++|
T Consensus 641 ~~~~~~~l~~~~~~l~kl~~~~~~~~~~~~~~~~---------------~~~~~l~~~d~~il~~l~~~i~~v~~~~e~y 705 (842)
T TIGR00396 641 LEWNDSGLEGARRFLDRVWNLFYNILGELDGKTY---------------LTPTILEEAQKELRRDVHKFLKKVTEDLEKL 705 (842)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHhhhccccc---------------CCcccCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999998776533210 0012245689999999999999999999998
Q ss_pred C-hHHHHHHHHHHHHHhhhHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhcCCCCcee
Q 002136 702 F-FGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEALI 780 (961)
Q Consensus 702 ~-f~~A~~~i~~f~~~~~~n~Yle~~K~~l~~~~~~~~~~~~~~~l~~vl~~~l~LL~Pf~P~itEeiw~~L~~~~~si~ 780 (961)
+ |+.|++++++|++ ++++ |. . ..++..+++.+++||+|||||+|||||+.|+..+.||+
T Consensus 706 ~~fn~ai~~l~~f~n-~L~~-~~-----------~-------~~~l~~~l~~ll~lLaPf~PhiaEElW~~l~~~~~sv~ 765 (842)
T TIGR00396 706 ESFNTAISAMMILLN-ALYK-AK-----------K-------DALYLEYLKGFLTVLSPFAPHLAEELWEKLGSEPFIIK 765 (842)
T ss_pred hhHHHHHHHHHHHHH-HHHh-hh-----------h-------HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhCCCCCeee
Confidence 8 9999999999983 4432 10 0 13688999999999999999999999999986445899
Q ss_pred ecCCCCCCCCCChHHHHHHHHHHHHHHHHHhhhhhcccCCCceeeEEEEcCHHHHHHHHhHHHHHHHHcCCccccEEeec
Q 002136 781 VSPWPQTSLPRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISASIVANEEVIQYISKEKEVLALLSRLDLLNVHFTE 860 (961)
Q Consensus 781 ~~~wP~~~~~~d~~~~~~~~~~~~~v~~ir~~r~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~i~~l~~~~~~~v~~~~ 860 (961)
.++||++++ .... -+.+.-+|+...++|....++... +.+++.+...+...+.+.|.+-+..++.++
T Consensus 766 ~~~wP~~d~----~~l~-~~~~~~~vqiNGK~r~~i~v~~~~-------~~~~i~~~a~~~~~v~~~l~gk~i~k~i~v- 832 (842)
T TIGR00396 766 QAKWPKVDE----TALV-EDKVTIVLQVNGKFKAKKTVPKDA-------DEEQVEELAKQDPEVKKYLENKTIKKVIYV- 832 (842)
T ss_pred cCCCCCCCH----HHHh-hcceEEEEEEcCeEEEEEEeCCCC-------CHHHHHHHHhcCHHHHHHhCCCCceEEEEe-
Confidence 999999762 1110 011111233333334333332210 233445555556667778877777777775
Q ss_pred CCCCCCCCcEEEEe
Q 002136 861 SPPGDANQSVHLVA 874 (961)
Q Consensus 861 ~~~~~~~~~v~~~v 874 (961)
|++.|++++
T Consensus 833 -----~~klvNiv~ 841 (842)
T TIGR00396 833 -----PGKLVNFVI 841 (842)
T ss_pred -----CCCEEEEEe
Confidence 456777665
No 24
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.5e-131 Score=1089.63 Aligned_cols=786 Identities=25% Similarity=0.452 Sum_probs=695.7
Q ss_pred CCCCCCh-hhHHHHHHHHHhCCCCCCCC--CCCCCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCC
Q 002136 59 LPKTFDF-TSEERIYNWWESQGYFKPNF--ERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (961)
Q Consensus 59 ~~~~~~~-~~E~~~~~~W~~~~~f~~~~--~~~~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G 135 (961)
.|+++++ ..|+++.++|.+.+.|+... .+++++|++.++||++||.+|.||++..||+|++.||..|+||.|-..+|
T Consensus 4 ~~~n~nfp~eEEkvle~W~e~~aF~~slk~sk~rp~ftFyDGPPFATGlPHyGHiLa~TIKDiVtRya~~~G~hVeRRFG 83 (1070)
T KOG0434|consen 4 VPENFNFPKEEEKVLEFWREIDAFHTSLKLSKGRPKFTFYDGPPFATGLPHYGHILASTIKDIVTRYATQTGHHVERRFG 83 (1070)
T ss_pred ccccCCCchhHHHHHHHHHHhhHHHHHHHhhCCCCceeeccCCccccCCCccchhhhhhHHHHHHHHhhccccceeeecc
Confidence 4677888 88999999999999998643 35789999999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHHcCCCc----cccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHH
Q 002136 136 TDHAGIATQLVVEKMLAAEGIKR----VELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVE 211 (961)
Q Consensus 136 ~D~~Gl~~q~~vek~l~~~g~~~----~~~~~~~f~~~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~ 211 (961)
|||||+|+|..+.|.| |++. .++|.+++...|+..+..|..++++.+.|||-++||++.|.||+|.+.+.|||
T Consensus 84 WD~HGlPVE~eIDKkL---gI~g~~dV~kmGI~kYN~ECR~IVmrYssEWe~tv~RlGRWidF~ndYkTmyp~FMESvWw 160 (1070)
T KOG0434|consen 84 WDTHGLPVEYEIDKKL---GITGRDDVMKMGIDKYNNECRKIVMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESVWW 160 (1070)
T ss_pred cccCCCccceeechhc---CCCCHHHHHHHhHHhHhHHHHHHHHHHHHHHHHHHHhhccceeccCCcceecHHHHHHHHH
Confidence 9999999999988876 6542 45788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCceEEcCeeeecCCCCCcccccccc--ccccCCCeEEEEEEEecCCC-eeEEEEecCCCccCCCcEEEECCC
Q 002136 212 AFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEV--EYSEEPGTLYYIKYRVAGRS-DFLTIATTRPETLFGDVALAVNPQ 288 (961)
Q Consensus 212 ~F~~L~~~GlIy~~~~~v~w~p~~~t~lsd~Ev--~~~e~~~~~~~~~~~~~~~~-~~l~v~TtrPeTl~g~~av~v~P~ 288 (961)
+|.+|+++|++|||-+.++||..|.|+||+-|- .|++..++.+.|.|++.+.. ..++.|||+|||||+|.|+||||+
T Consensus 161 vFkeL~~kglVYRG~kVMP~STac~TPLSNFEa~QNYKdV~DPav~v~F~li~~~~~slvAWTTTPWTLPSNlal~Vnp~ 240 (1070)
T KOG0434|consen 161 VFKELHEKGLVYRGFKVMPYSTACTTPLSNFEAQQNYKDVPDPAVFVAFPLIGDPNVSLVAWTTTPWTLPSNLALCVNPD 240 (1070)
T ss_pred HHHHHHhcCceecceeeeccccccCCcccchhcccCcccCCCCeEEEEeeccCCcceeEEEEecCCccCccceeEEEcCC
Confidence 999999999999999999999999999999886 69999999999999997654 789999999999999999999999
Q ss_pred Cch----------------------h----------------hhhccCeeeccCCC------CCeeeeeecCccccCCCc
Q 002136 289 DEH----------------------Y----------------SQFIGMMAIVPMTY------GRHVPIISDKYVDKEFGT 324 (961)
Q Consensus 289 ~~~----------------------y----------------~~l~g~~~~~P~~~------~~~ipii~~~~V~~~~GT 324 (961)
-.+ | +.|.|++|..+|.+ .....|++|+||+.+.||
T Consensus 241 ~~Yvki~dk~~~k~yil~esrl~~l~k~~~~~~~eiler~~G~~L~g~kYeplF~YF~~~~~~~aFrvl~d~yVt~~sGT 320 (1070)
T KOG0434|consen 241 FQYVKIKDKTTGKKYILMESRLGELYKNPKNDNYEILERFQGAALVGLKYEPLFPYFAETFEEGAFRVLSDDYVTEDSGT 320 (1070)
T ss_pred eEEEEEEeccCCeEEEEeHHHHHHHhcCcccccHHHHHhcccccccCcccCccchHHHHHhccCceEEeccCcEecCCCc
Confidence 531 2 35889999888742 356899999999999999
Q ss_pred ceeEeCCCCChhHHHHHHHhCC-----CceeecCCCCcccccccccCCCchHHHHHHHHHHHHHcCCccccccccccCCc
Q 002136 325 GVLKISPGHDHNDYLLARKLGL-----PILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPR 399 (961)
Q Consensus 325 G~v~~~Pah~~~D~~~~~~~~l-----~~~~~~~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~ 399 (961)
|+||++|+.|.+||.+|...|+ -+.|++|++|.++.....|+|..++||.+.|++.|++.|.+++...+.|+||+
T Consensus 321 GiVH~AP~FGe~Dy~~c~~~giI~~d~~~~cpVDe~G~~Tsev~dfaG~YVKDaDK~Ii~~lk~~g~lv~~~~i~HsYPF 400 (1070)
T KOG0434|consen 321 GIVHQAPAFGEEDYRACVANGIIRKDSLPPCPVDESGLFTSEVTDFAGQYVKDADKLIIRSLKASGRLVKASQITHSYPF 400 (1070)
T ss_pred eeeecCCccChhhHHHHHHcCcccCCCCCCCccccCCccccccccccceeeccchHHHHHHHHhcCceeeeeeeeeccCc
Confidence 9999999999999999998886 46899999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCceeeeeccceeeeccHHHHHHHHHHHcCCceeechhH-HHHHHHHHhcCCCceeeeccCCCcccceEEEcCCcc
Q 002136 400 SQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERF-EKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEE 478 (961)
Q Consensus 400 ~~r~~~~v~~~~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~-~~~~~~wl~~l~DW~ISRq~~WG~pIP~~~~~~~~~ 478 (961)
||||++|+++++.|.||++++++.+++++... +..|+|+.. .++|.|||+|.+||.|||+|+||+|||.|..+. .+
T Consensus 401 CWRSDTPLiYraVPsWFVrVk~~v~~ll~nn~--~t~WVP~~ikeKRF~NWL~nARDW~iSRnR~WGTPIpLWVSdD-~e 477 (1070)
T KOG0434|consen 401 CWRSDTPLIYRAVPSWFVRVKNIVDQLLRNNM--KTHWVPQNIKEKRFANWLKNARDWNISRNRYWGTPIPLWVSDD-YE 477 (1070)
T ss_pred eecCCChHHHhhccHhhhhHHHHHHHHHhccc--ccccCChhhhHHHHHHHHhhhhhcccccccccCCCcceEEccC-Cc
Confidence 99999999999999999999999999998754 678999986 579999999999999999999999999999743 45
Q ss_pred cEEEecChHHHHHHHHhhc----------------CCCcccccCCCceeeeecCCCccccccCCCCCChhHHhhcCCcce
Q 002136 479 EYIVARNADEALEKAHQKY----------------GKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTM 542 (961)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~dvldtWf~S~l~~~~~~~~p~~~~~~~~~~~P~d~ 542 (961)
+.++..++.++.+....+. +....+.|-++|+|.||+||.+|++..+||.++++.|+.-||+|+
T Consensus 478 evVcigSi~eLEeLSG~kItDlHRe~iD~itIps~~gkg~l~Rv~eVfDCWFESGSMPYAq~HyPFenk~~fe~~fPadF 557 (1070)
T KOG0434|consen 478 EVVCIGSIKELEELSGVKITDLHRESIDHITIPSKKGKGVLHRVSEVFDCWFESGSMPYAQRHYPFENKEEFEENFPADF 557 (1070)
T ss_pred eEEEeccHHHHHHhcCCcchhhhhhhcCceecccCCCCcceehhhhHhhhhhccCCCcchhhcCCccchHHHhhcCchHh
Confidence 6788888887654332110 112357888999999999999999999999999899999999999
Q ss_pred EeeeccccccHHHHHHHHHhHhcCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHhCCC--CC
Q 002136 543 LETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA--GQ 620 (961)
Q Consensus 543 ~~~G~Dil~fw~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~~~--~~ 620 (961)
+-+|-||.|+|++.++.+|.+++|+.||++|+++|+|+..+|+|||||+.|..+|..+|++|||||||+||++++. .+
T Consensus 558 IaEGlDQTRGWFYTL~VlsT~LF~kppfkNvIvnGlVLAeDG~KMSKrlkNYPdP~~iinkYGADalRlYLInSPVvraE 637 (1070)
T KOG0434|consen 558 IAEGLDQTRGWFYTLLVLSTALFGKPPFKNVIVNGLVLAEDGKKMSKRLKNYPDPSLIINKYGADALRLYLINSPVVRAE 637 (1070)
T ss_pred hhhccccccchhhHHHHHHHHHcCCCcchheeEeeeEEecccHHHhhhhhcCCCHHHHHHhhcchheeeeeecCcccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999877 89
Q ss_pred ccccCHHHHHH-HHHHHHHHHHHHHHHHhhCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhhh
Q 002136 621 DLSLSIERLTA-NKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYD 699 (961)
Q Consensus 621 D~~f~~~~~~~-~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e 699 (961)
.+.|.++.+.. ....+-.+||+++|+.+|..-....+. ..+.-.......+.+|+||++..+.++.-+++.|+
T Consensus 638 ~LkFkeeGVrevvk~v~lPW~NsyrF~~qn~~~~~~~~g------~~f~~~~~~~S~NvmDrWI~a~~qslv~fv~~eM~ 711 (1070)
T KOG0434|consen 638 NLKFKEEGVREVVKDVLLPWYNSYRFLVQNAALLKKETG------KDFVFDDSVTSSNVMDRWILASTQSLVGFVREEMD 711 (1070)
T ss_pred ccccchhhHHHHHHhhhhhhhHHHHHHHHHHHHhccccC------CccccccccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988 578889999999999887532111000 00000111224467899999999999999999999
Q ss_pred cCChHHHHHHHHHHHHHhhhHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhcC-----
Q 002136 700 KYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRK----- 774 (961)
Q Consensus 700 ~~~f~~A~~~i~~f~~~~~~n~Yle~~K~~l~~~~~~~~~~~~~~~l~~vl~~~l~LL~Pf~P~itEeiw~~L~~----- 774 (961)
+|++..++-.+..|+ +++.|||+...+.++.+.....+.-.++.+|..+|.++.++|+||+||+||.|||+|..
T Consensus 712 ~YrLytVvp~llkfi-D~LTNwYiR~nRrrlkGe~G~~d~~~AL~~Lf~vL~t~~r~MaPfTPF~tE~iyq~Lk~~~~~~ 790 (1070)
T KOG0434|consen 712 QYRLYTVVPRLLKFI-DELTNWYIRFNRRRLKGENGEHDCHNALNVLFEVLFTLVRVMAPFTPFFTEYIYQNLKKYIPID 790 (1070)
T ss_pred heehhhhHHHHHHHH-HHhhhhheehhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhcCCcc
Confidence 999999999999998 89999999999999887655557788999999999999999999999999999999963
Q ss_pred ----CCCceeecCCCCCCC-CCChHHHHHHHHHHHHHHHHHhhhhhcccCCCceeeEEEE--cCHHHHHHHHhHHHHHHH
Q 002136 775 ----RKEALIVSPWPQTSL-PRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISASIV--ANEEVIQYISKEKEVLAL 847 (961)
Q Consensus 775 ----~~~si~~~~wP~~~~-~~d~~~~~~~~~~~~~v~~ir~~r~~~~i~~~~~~~~~i~--~~~~~~~~~~~~~~~i~~ 847 (961)
..+|||...+|.+.+ ..|+..+..++.++.+|...|.+|...+|+-+.+++..++ ++++..+.++.....|.
T Consensus 791 ~~~~~~~SVHfl~~P~~~~~~~de~ve~~v~~m~siIdl~R~iRern~islKtPLK~~ivi~~d~~~ledik~l~~yI~- 869 (1070)
T KOG0434|consen 791 KNEKSERSVHFLSYPTPKEELIDETVERRVERMQSIIDLARNIRERNTISLKTPLKELIVIHSDEEYLEDIKSLERYIL- 869 (1070)
T ss_pred ccCCccceeEEeecCCchhhhccchHHHHHHHHHHHHHHHHHHhhccCCcccCchhheEEEcCCHHHHHHHHHHHHHHH-
Confidence 257899999999874 7889999999999999999999999999998888885554 66777777766555543
Q ss_pred HcCCccccEEee
Q 002136 848 LSRLDLLNVHFT 859 (961)
Q Consensus 848 l~~~~~~~v~~~ 859 (961)
..++.+++.+.
T Consensus 870 -eElNVr~v~~~ 880 (1070)
T KOG0434|consen 870 -EELNVREVVFT 880 (1070)
T ss_pred -Hhhcceeeeec
Confidence 34555666553
No 25
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=100.00 E-value=1e-130 Score=1206.50 Aligned_cols=673 Identities=26% Similarity=0.435 Sum_probs=549.8
Q ss_pred CCCCCh-hhHHHHHHHHHhCCCCCCCCCCCCCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCC
Q 002136 60 PKTFDF-TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDH 138 (961)
Q Consensus 60 ~~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~ 138 (961)
.+.||+ ++|++||++|+++++|++..+.+ ++|+++++||||||.|||||+++++++|+++||+||+|++|+|++||||
T Consensus 2 ~~~y~~~~iE~~w~~~W~~~~~f~~~~~~~-~~~~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~ 80 (805)
T PRK00390 2 MERYNPKEIEKKWQKYWEENKTFKTTEDSS-KKYYVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDA 80 (805)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcccCccCC-CCEEEEccCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCC
Confidence 467999 89999999999999999876543 4799999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHh
Q 002136 139 AGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHE 218 (961)
Q Consensus 139 ~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~ 218 (961)
||+|||.+++ +.|+++ ++|++++++.|++||++||+++||+++|+|+||+|.++++++|.+|++
T Consensus 81 ~Glpie~~a~----~~g~~~------------~~~~~~~~~~~~~~~~~lGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~ 144 (805)
T PRK00390 81 FGLPAENAAI----KTGTHP------------AEWTYENIANMKKQLKSLGFSYDWSREIATCDPEYYKWTQWIFLKLYE 144 (805)
T ss_pred CCCHHHHHHH----HcCCCH------------HHHHHHHHHHHHHHHHHhCCcccCCCCeecCCHHHHHHHHHHHHHHHH
Confidence 9999887654 347654 467899999999999999999999999999999999999999999999
Q ss_pred cCceEEcCeeeecCCCCCcccccccccccc--C-----------------------------------------------
Q 002136 219 KGLIYQGSYMVNWSPNLQTAVSDLEVEYSE--E----------------------------------------------- 249 (961)
Q Consensus 219 ~GlIy~~~~~v~w~p~~~t~lsd~Ev~~~e--~----------------------------------------------- 249 (961)
+|+||++.++|+|||.|+|+||++||+... .
T Consensus 145 ~Gliy~~~~~v~wcp~~~t~La~~ev~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~L~~~l~~~~~w~~~v~~~~~~wig 224 (805)
T PRK00390 145 KGLAYRKESPVNWCPVDGTVLANEQVIDGRCWRCGAPVEKKELRQWFLKITDYADELLDDLDKLEDWPEKVKTMQRNWIG 224 (805)
T ss_pred CCCEEEecCEEEecCCcCCCCCHHHhhCCeecccCCeeEEEecceeeEecchhHHHHHHHHHhhccCcHHHHHHHHhhcc
Confidence 999999999999999999999999997421 1
Q ss_pred CCeEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCchhhh---------------------------------hc
Q 002136 250 PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQ---------------------------------FI 296 (961)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~y~~---------------------------------l~ 296 (961)
.+..+||+|++.+++.+++|||||||||+|++||||||+++++.. |+
T Consensus 225 ~~~~~~i~f~~~~~~~~l~v~TTrPeTl~g~~aiav~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 304 (805)
T PRK00390 225 RSEGAEVTFKVEDSDEKIEVFTTRPDTLFGATYLVLAPEHPLVEKLAEQNPAVAAFIEECKKKSDLERQTETKEKTGVFT 304 (805)
T ss_pred ccceEEEEEEccCCCCEEEEEeCCchHhhcceEEEECCCChhHHhhhcchHHHHHHHHHHhhhcchhhhhcccceeeeec
Confidence 135688999998767899999999999999999999999987643 58
Q ss_pred cCeeeccCCCCCeeeeeecCccccCCCcceeEeCCCCChhHHHHHHHhCCCceeecCCC--------------Ccccccc
Q 002136 297 GMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKD--------------GTLNEVA 362 (961)
Q Consensus 297 g~~~~~P~~~~~~ipii~~~~V~~~~GTG~v~~~Pah~~~D~~~~~~~~l~~~~~~~~~--------------G~~~~~~ 362 (961)
|+++.||+ .++.+||+.++||++++|||+||+|||||++||++|++||||+++++|.+ |+|++ .
T Consensus 305 g~~~~~P~-~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~i~~~g~~~~~~~~~~~~~g~~~~-~ 382 (805)
T PRK00390 305 GLYAIHPL-TGEKIPVWIADYVLMDYGTGAVMAVPAHDQRDFEFAKKYGLPIKPVIEPGDGDEDISEEAYTGDGVLIN-S 382 (805)
T ss_pred CcEEECCC-CCCeeeEEEeccccCCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeCCCCcccccccccccCCeEEEe-c
Confidence 99999999 58999999999999999999999999999999999999999999999754 44443 3
Q ss_pred cccCCCchHHHHHHHHHHHHHcCCccccccccccCCcccCCCCceeeeeccceeeeccHHHHHHHHHHHcCCceeechhH
Q 002136 363 GLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERF 442 (961)
Q Consensus 363 g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~ 442 (961)
|.|+|+++++||++|++.|++.|++. . .+.+
T Consensus 383 ~~~~Gl~~~~a~~~Ii~~L~~~g~~~----------------~----------------------------~v~~----- 413 (805)
T PRK00390 383 GELDGLDSEEAKEAIIAWLEEKGLGK----------------R----------------------------KVNY----- 413 (805)
T ss_pred cccCCCCHHHHHHHHHHHHHHcCCCC----------------C----------------------------ceEE-----
Confidence 88999999999999999999999842 1 1222
Q ss_pred HHHHHHHHhcCCCceeeeccCCCcccceEEEcCCcccEEEecChH--------------HHHHHHHh----hc-CCCccc
Q 002136 443 EKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNAD--------------EALEKAHQ----KY-GKNVEI 503 (961)
Q Consensus 443 ~~~~~~wl~~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~--------------~~~~~~~~----~~-~~~~~~ 503 (961)
+++|||||||||||+|||+|||+. ++...+..+.. ..+....+ .| ..+..+
T Consensus 414 ---------~l~DW~ISRQR~WG~PIPi~~~~~-~g~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 483 (805)
T PRK00390 414 ---------RLRDWGISRQRYWGEPIPIIHCED-CGIVPVPEEDLPVVLPEDVVPDGTGSPLAKHPEWVNVTCPKCGKPA 483 (805)
T ss_pred ---------ECCCccccccccCCCceeEEEECC-CCceeCchHhhhhhhhhhcccCCCCChhhhchhhhCCCccccCCCc
Confidence 468999999999999999999953 34322221100 00111110 11 112358
Q ss_pred ccCCCceeeeecCCCccccccCCCCCC-----hhHHhhcCCcceEeeecccc-------ccHHHHHHHHHhHhcCCCCce
Q 002136 504 YQDPDVLDTWFSSALWPFSTLGWPDVS-----ADDFKKFYPTTMLETGHDIL-------FFWVARMVMMGIEFTGSVPFS 571 (961)
Q Consensus 504 ~~~~dvldtWf~S~l~~~~~~~~p~~~-----~~~~~~~~P~d~~~~G~Dil-------~fw~~~~i~~~~~l~~~~Pfk 571 (961)
+|++|||||||||+ ||++.++||..+ +++|++|||+|++++|+|++ |||...|..+++ ..++.||+
T Consensus 484 ~re~Dv~DtwfdSs-w~~~~~~~p~~~~~~~~~~~~~~~~P~Dly~~G~D~~i~hL~y~Rf~~~~l~~~~~-~~~~~Pfk 561 (805)
T PRK00390 484 RRETDTMDTFVGSS-WYYLRYTDPHNDEAPFDKEAANYWLPVDQYIGGIEHAVLHLLYARFFTKVLRDLGL-VSSDEPFK 561 (805)
T ss_pred eeCCcccccccccc-cHHHHhcCcccccCcCChHHhhCcCCCcEEeccHHHHHHHHHHHHHHHHHHHHhhc-ccCCcchh
Confidence 99999999999998 999999998632 47899999999999999965 455544444444 36889999
Q ss_pred EEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHhCCC-CCccccCHHHHHHHHHHHHHHHHHHHHHHhhC
Q 002136 572 HVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTANKAFTNKLWNAGKFILQNL 650 (961)
Q Consensus 572 ~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~~~-~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~ 650 (961)
+|++|||| |||||+||+|+|.+++++||||++|||+++.++ ++|++|+++.+.+.+++++++||++++..++.
T Consensus 562 ~v~~~G~v------KMSKS~GN~i~p~~~i~~ygaD~lRl~l~~~~~~~~d~~~s~~~l~~~~~~l~kl~~~~~~~~~~~ 635 (805)
T PRK00390 562 KLLTQGMV------KMSKSKGNVVDPDDIIEKYGADTARLFEMFAGPPEKDLEWSDSGVEGAYRFLQRVWRLVVDAKGEA 635 (805)
T ss_pred hheecCcE------EeCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCccCCcccCHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999 999999999999999999999999999998766 99999999999999999999999999855443
Q ss_pred CCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhhHHHHHHhhhhh
Q 002136 651 PSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARL 730 (961)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~i~~f~~~~~~n~Yle~~K~~l 730 (961)
..+. ......|+|++++++.++++++++|++|+|+.|++.+++|+ +++..+| +
T Consensus 636 ~~~~-------------------~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~-n~lsk~~-~------ 688 (805)
T PRK00390 636 GALD-------------------VAALSEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELV-NALYKAE-D------ 688 (805)
T ss_pred cccC-------------------cccChhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHH-H------
Confidence 2111 12235799999999999999999999999999999999998 4666555 1
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhcCCCCceeecCCCCCCC-CCChHHHHHHHHHHHHHHHH
Q 002136 731 YRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQTSL-PRHMSAIKRFENLQSLTRAI 809 (961)
Q Consensus 731 ~~~~~~~~~~~~~~~l~~vl~~~l~LL~Pf~P~itEeiw~~L~~~~~si~~~~wP~~~~-~~d~~~~~~~~~~~~~v~~i 809 (961)
..++.++..+++.+++||+|||||+|||||+.|+.. +||+.++||++++ .. .+..+ .-+++.+
T Consensus 689 ---------~~~~~~l~~~l~~l~~lLaPf~P~iaEElw~~L~~~-~sv~~~~wP~~~~~~~---~~~~~---~~~iqin 752 (805)
T PRK00390 689 ---------EQDKAVLREALEILVRLLAPFAPHLAEELWEKLGHE-GSIANAPWPTADEAAL---VEDEV---TIVVQVN 752 (805)
T ss_pred ---------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCCC-CeeEecCCCCCCHHHh---hhhcc---EEEEEEc
Confidence 235678999999999999999999999999999753 6899999999763 11 11112 2234444
Q ss_pred HhhhhhcccCCCceeeEEEEcCHHHHHHHHhHHHHHHHHcCCccccEEeecCCCCCCCCcEEEEe
Q 002136 810 RNARAEYSVEPAKRISASIVANEEVIQYISKEKEVLALLSRLDLLNVHFTESPPGDANQSVHLVA 874 (961)
Q Consensus 810 r~~r~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~v~~~v 874 (961)
.++|...+++.+. +.+++.+.+.+...+-+.|.+-...++.++ |++.+++++
T Consensus 753 gk~r~~i~v~~~~-------~~~~i~~~a~~~~~i~~~l~~k~i~k~I~v------p~kiiNiv~ 804 (805)
T PRK00390 753 GKVRGKIEVPADA-------SKEEIEALALADEKVQKFLEGKTIKKVIVV------PGKLVNIVV 804 (805)
T ss_pred cceeEEEEeCCCC-------CHHHHHHHHhcCHHHHHHhCCCCccEEEEe------CCCEEEEEe
Confidence 5666666665431 233445555556667777766566676664 456677654
No 26
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-127 Score=1072.91 Aligned_cols=704 Identities=24% Similarity=0.396 Sum_probs=615.2
Q ss_pred CCCCCh-hhHHHHHHHHHhCCCCCCCCC-CCCCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCC
Q 002136 60 PKTFDF-TSEERIYNWWESQGYFKPNFE-RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTD 137 (961)
Q Consensus 60 ~~~~~~-~~E~~~~~~W~~~~~f~~~~~-~~~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D 137 (961)
+..+|- ..+.+..+-|....+++...+ ..+..|++.+ +||.||||||+|.+++||+.||+-++|++|+|+||||
T Consensus 27 ~v~~Ns~gr~~q~~evi~~~~~~~~qls~~q~~~f~L~d----anG~lhlghalnkILkdIinr~~laqg~~alyvpGwD 102 (937)
T KOG0433|consen 27 LVHFNSTGRIGQVIEVIQPPEILSSQLSDQQRVEFELKD----ANGNLHLGHALNKILKDIINRILLAQGKSALYVPGWD 102 (937)
T ss_pred ccccccccchHHHHHHhCChHHHHHHHhhccCceEEEec----cCCCccchHHHHHHHHHHHHHHHHhcCceeccCCCCC
Confidence 344555 457788899988888765443 4467799999 7999999999999999999999999999999999999
Q ss_pred CCCchHH-HHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHH
Q 002136 138 HAGIATQ-LVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRL 216 (961)
Q Consensus 138 ~~Gl~~q-~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L 216 (961)
|||||+| .++-+.+.+ ....++.-+..+.+..++.+.++.+++.|+++|+..||.++|.|+||+|..+..++|.+|
T Consensus 103 chGLPiEs~kalssl~~---~~~~~s~leiR~~Ar~fA~~AIk~Q~e~F~r~gv~aDW~n~Y~T~~~~ye~aQL~iF~~l 179 (937)
T KOG0433|consen 103 CHGLPIESTKALSSLTE---SEGSRTPLEIRAKARIFADEAIKKQMEAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKL 179 (937)
T ss_pred cCCCchHHHHHhhhhhh---ccccCCcHHHHHHHHHHHHHHHHHHHHHHHHheeeccCCCceeecChHHHHHHHHHHHHH
Confidence 9999998 455444422 224556667888999999999999999999999999999999999999999999999999
Q ss_pred HhcCceEEcCeeeecCCCCCccccccccccccC-CCeEEEEEEEecCC------------CeeEEEEecCCCccCCCcEE
Q 002136 217 HEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEE-PGTLYYIKYRVAGR------------SDFLTIATTRPETLFGDVAL 283 (961)
Q Consensus 217 ~~~GlIy~~~~~v~w~p~~~t~lsd~Ev~~~e~-~~~~~~~~~~~~~~------------~~~l~v~TtrPeTl~g~~av 283 (961)
|++|||||+.+||+|+|+.+|||++.|+||.+. .++++||+|++.+. ..|.+||||+|||||+|.||
T Consensus 180 yekgLvyR~~KPVyWSpSSRTALAEaELEYn~nH~S~S~Y~~F~L~~~S~~~~~~~~~~~~iyaLVWTTTPWTlPsN~Ai 259 (937)
T KOG0433|consen 180 YEKGLVYRSFKPVYWSPSSRTALAESELEYNDNHQSTSAYFRFKLINFSSSAHSEDSKIPQIYALVWTTTPWTLPSNNAI 259 (937)
T ss_pred HhccceeccCCcceecCcchhhhhhhhccCCcCCcceeEEEEEeccCCccccccCCCccCcEEEEEEeCCCcccccccee
Confidence 999999999999999999999999999999875 58999999999642 16899999999999999999
Q ss_pred EECCCCch-------------h--------------------------hhhccCeeeccCCCCCeeeeeecCccccCCCc
Q 002136 284 AVNPQDEH-------------Y--------------------------SQFIGMMAIVPMTYGRHVPIISDKYVDKEFGT 324 (961)
Q Consensus 284 ~v~P~~~~-------------y--------------------------~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GT 324 (961)
++||+-.+ | .+|.|.+|.||+......|++.++||+++.||
T Consensus 260 ~~n~~~~Yslv~~~~~~~~~~ylvas~L~~~fe~~~~~k~~i~~t~~g~~L~~~~Y~~pl~~~~~~P~l~g~hVT~~~GT 339 (937)
T KOG0433|consen 260 SVNSAIQYSLVQFDNNPTSTFYLVASKLLEEFEKSSDRKCKIVGTVKGANLIGRRYKHPLHNELGLPILEGPHVTDTVGT 339 (937)
T ss_pred eeccccceEEEEeccCCcceEEEEccchhhhhhhhcCcceeeeeecchhhccCceecCcCccccCCccccccceecCccc
Confidence 99998542 1 25889999999977888999999999999999
Q ss_pred ceeEeCCCCChhHHHHHHHhCCCceeecCCCCccccccc-ccCCCchH-HHHHHHHHHHHHcCCccccccccccCCcccC
Q 002136 325 GVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAG-LFRGLDRF-EARKKLWSDLEETGLAVKKEPHTLRVPRSQR 402 (961)
Q Consensus 325 G~v~~~Pah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g-~~~G~~~~-~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r 402 (961)
|+||++||||++||.+|-.+|||+.+++|++|+++.++| .+.|+.|. |..+.|+..|. +.+++.+++.|+||+.||
T Consensus 340 GLVHTAP~HG~eDYlv~l~~~l~~~s~VD~~G~yT~ea~~~l~Gk~VL~eG~k~vl~~l~--~~iv~~sky~HsYPYDWR 417 (937)
T KOG0433|consen 340 GLVHTAPAHGFEDYLVAISKGLRVESFVDSRGCYTREAGHDLDGKEVLGEGQKIVLRLLN--HDIVHVSKYVHSYPYDWR 417 (937)
T ss_pred ceeecCCCCChHHHHHHhhcCCCcccccCCCCceecccccccccchhhccccHhHHHHHh--hhhhhhhcccccCCcccc
Confidence 999999999999999999999999999999999999988 78999997 56677777777 788999999999999999
Q ss_pred CCCceeeeeccceeeeccHHHHHHHHHHHcCCceeechhHHHHHHHHHhcCCCceeeeccCCCcccceEEEcCCcccEEE
Q 002136 403 GGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIV 482 (961)
Q Consensus 403 ~~~~v~~~~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~ 482 (961)
+++|++.|.++|||+++++++..+.++++ +++|.|.....++..++..+++|||||||.||+|||++|..+ .+.|..
T Consensus 418 TKKPvIiRAseQWFi~~e~~k~~A~~al~--~Vk~~P~~~~~rl~~~~~~R~~WCISRQR~WGvPIP~ly~k~-~~~~l~ 494 (937)
T KOG0433|consen 418 TKKPVIIRASEQWFIDVEEIKKRASMALD--DVKVAPGDSDLRLKQLVTTRPSWCISRQRVWGVPIPALYDKN-GGSYLS 494 (937)
T ss_pred cCCceEEecchhheeeHHhhhhHHHHHHh--hceeCCcchHHHHHHHHcCCCcceeeeccccCCcceeEEecC-CCceee
Confidence 99999999999999999999999999997 699999999999999999999999999999999999999854 233332
Q ss_pred ---------------------ecChHHHHHHHHh-hc-CCCcccccCCCceeeeecCCCccccccCCCCCChhHHhhcCC
Q 002136 483 ---------------------ARNADEALEKAHQ-KY-GKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYP 539 (961)
Q Consensus 483 ---------------------~~~~~~~~~~~~~-~~-~~~~~~~~~~dvldtWf~S~l~~~~~~~~p~~~~~~~~~~~P 539 (961)
..++++.++.... .. .....+.+.+|+||+|||||..+-+.++- +.-.+
T Consensus 495 ns~~~~h~~~~~eqeGsD~Ww~~~~eellpe~~~~e~~~~a~ey~kgtDimDVWFDSGssWs~v~~~--------~~~~~ 566 (937)
T KOG0433|consen 495 NSLIEWHAKLTREQEGSDVWWEIDVEELLPEEEVREIPDIASEYKKGTDIMDVWFDSGSSWSAVLDN--------EREHV 566 (937)
T ss_pred hHHHHHHHHHHHHHhCCcceEeCChhHhCcHhhhcccchhHHHhccCCceeeeEecCCCcceeecCC--------CCCcc
Confidence 2222222211100 00 11235778999999999999755444442 23367
Q ss_pred cceEeeeccccccHHHHHHHHHhHhcCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhh------cChhHHHHHH
Q 002136 540 TTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE------FGADALRFTI 613 (961)
Q Consensus 540 ~d~~~~G~Dil~fw~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~------yGaDalR~~L 613 (961)
+|++.+|.||+++||.++++++.+..+++||+.|++|||++|++|.|||||+||||+|..+++. ||+|+||||+
T Consensus 567 aDv~LEG~DQ~rGWFQSsLLTsvA~q~kAPYk~vivHGFtlDE~G~KMSKSlGNVidP~~v~~G~~k~payGaD~LR~WV 646 (937)
T KOG0433|consen 567 ADVYLEGVDQFRGWFQSSLLTSVAVQNKAPYKKVIVHGFTLDENGNKMSKSLGNVVDPTMVTDGSLKQPAYGADGLRFWV 646 (937)
T ss_pred eeeEEecchhcchHHHHHHHHHHHHhccCCchheeeeeeEecCCccchhhcccCcCCHHHHhCCcccCCCccccceeeee
Confidence 9999999999999999999999999999999999999999999999999999999999999997 9999999999
Q ss_pred HhCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHH
Q 002136 614 SLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDT 693 (961)
Q Consensus 614 ~~~~~~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~ 693 (961)
+.+....|+....+.+.....-+.|++|.+||+++|+.++..... ..+..++.-.|++++.+|+.++++
T Consensus 647 A~~~~t~d~~iGp~il~qv~e~l~K~R~T~RfllGnl~d~~~~~~-----------~~p~~dl~~iDq~~L~ql~~~~~~ 715 (937)
T KOG0433|consen 647 AGSENTGESKIGPKILDQVDEKLIKFRNTFRFLLGNLQDFDGKQV-----------KFPLKDLRYIDQYMLQQLDAIVKR 715 (937)
T ss_pred ecccccCceecCHHHHHHHHHHHHHHHhHHHHHhhcccccCCccc-----------cccchhhhhhhHHHHHHHHHHHHH
Confidence 977669999999999999999999999999999999987765211 223456777899999999999999
Q ss_pred HHHhhhcCChHHHHHHHHHHHHHhhhHHHHHHhhhhhccCC-ChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHh
Q 002136 694 VTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSE-YDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSL 772 (961)
Q Consensus 694 v~~a~e~~~f~~A~~~i~~f~~~~~~n~Yle~~K~~l~~~~-~~~~~~~~~~~l~~vl~~~l~LL~Pf~P~itEeiw~~L 772 (961)
+++.|++|+|+++++.+..|+.++++++|+.++|+|+|++. +...+++++.+|.+++..+++.++||+||++||+||+|
T Consensus 716 i~e~Y~~Y~f~kVv~~lq~F~~~~lSa~YfdivKDRLY~~~~~s~~rrs~QttL~h~l~~l~~~iaPIlP~LaeEvwq~l 795 (937)
T KOG0433|consen 716 IIELYNDYKFRKVVNDLQQFLQRNLSAFYFDIVKDRLYCDKVGSESRRSAQTTLHHLLHNLAHIISPILPHLAEEVWQHL 795 (937)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999974 34488999999999999999999999999999999999
Q ss_pred cCCCCceeecCCCCCCC-CCChH
Q 002136 773 RKRKEALIVSPWPQTSL-PRHMS 794 (961)
Q Consensus 773 ~~~~~si~~~~wP~~~~-~~d~~ 794 (961)
+...+-++...||.... +....
T Consensus 796 P~~~~~~f~~k~~~l~s~~~~~~ 818 (937)
T KOG0433|consen 796 PGSHEKIFRLKWEDLHSGLLTPH 818 (937)
T ss_pred CCCCCcccccCccccchhhcCch
Confidence 96555588999999874 44433
No 27
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.5e-107 Score=961.63 Aligned_cols=612 Identities=28% Similarity=0.493 Sum_probs=491.2
Q ss_pred CCCCh-hhHHHHHHHHHhCCCCCCCCCCCC-CCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCC
Q 002136 61 KTFDF-TSEERIYNWWESQGYFKPNFERGS-DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDH 138 (961)
Q Consensus 61 ~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~-~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~ 138 (961)
..|++ .+|+|||++|+++++|+.+.+.++ ++|+++++.|||||.|||||++|||+.||++||+||+||||||++|||+
T Consensus 3 ~~y~~~~IE~KWQ~~W~e~~~Fe~~~d~~~~~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwda 82 (814)
T COG0495 3 SRYNPREIEEKWQKRWEEAKVFEADEDSDKPEKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDA 82 (814)
T ss_pred cccchHHHHHHHHHHHHhcCCcccCCCCCCCCceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCcccc
Confidence 56888 899999999999999999877665 5999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHh
Q 002136 139 AGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHE 218 (961)
Q Consensus 139 ~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~ 218 (961)
+|+|+ |.++.+.|.+|. .|++++++.+++||++||+|+||+|++.|+||+|++++||+|.+|++
T Consensus 83 fGlPa----e~~A~~~~~~P~------------~wt~~ni~~~k~qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~F~kL~e 146 (814)
T COG0495 83 FGLPA----ENAAIKIGTDPA------------KWTYYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQFLKLYE 146 (814)
T ss_pred cCchH----HHHHHHhCCChH------------HHHHHHHHHHHHHHHHhCCccccccceecCCccHHHHHHHHHHHHHH
Confidence 99995 445556677765 68899999999999999999999999999999999999999999999
Q ss_pred cCceEEcCeeeecCCCCCccccccccccc------c--------------------------------------------
Q 002136 219 KGLIYQGSYMVNWSPNLQTAVSDLEVEYS------E-------------------------------------------- 248 (961)
Q Consensus 219 ~GlIy~~~~~v~w~p~~~t~lsd~Ev~~~------e-------------------------------------------- 248 (961)
+||||+++++|||||.|+|+|+|+||... +
T Consensus 147 kGL~y~~~~~VnwcP~d~tvlaneqv~~g~~~r~~~~V~~kel~qw~~kit~yae~ll~~l~~l~~~wPE~Vk~mq~nWI 226 (814)
T COG0495 147 KGLAYRKEAPVNWCPVDGTVLANEQVIDGGCWRCGEPVEIKELTQWFFKITDYADELLDDLDKLATLWPETVKGMQRNWI 226 (814)
T ss_pred CCCEEeccccceeCCCcCCccccceeecCCcccCCCceeEeeeEEEEEEechhHHHHHhhhhhhccCCchhHHHHHHcCc
Confidence 99999999999999999999999999744 1
Q ss_pred CCCeEEEEEEEecCC--CeeEEEEecCCCccCCCcEEEECCCCchhh---------------------------------
Q 002136 249 EPGTLYYIKYRVAGR--SDFLTIATTRPETLFGDVALAVNPQDEHYS--------------------------------- 293 (961)
Q Consensus 249 ~~~~~~~~~~~~~~~--~~~l~v~TtrPeTl~g~~av~v~P~~~~y~--------------------------------- 293 (961)
..+.-+.+.|.+.+. ...+.|+||||.|++|.+.+++.|+++.-.
T Consensus 227 g~s~g~~v~f~~~~~~~~~~~~vfttr~dt~~gvt~~~~a~~h~lv~~~~~~~~~~~~a~fv~~~~~~~~~~~~~~~~~k 306 (814)
T COG0495 227 GPSEGYEVAFVVDGEEEIVSIEVFTTRPDTLFGVTYVVLAPEHPLVGKLVTNPQTPLVAEFVDECKGTGVVESVPAHAEK 306 (814)
T ss_pred CCCCCeEEEEecCCcccceeeeeeeccCccccCeEEEEEeCCchHHHHHhcCccchhHHHHHHHhcCCCceeeeeccCCC
Confidence 011123334444332 246899999999999999999999985210
Q ss_pred --hhccCeeeccCCCCCeeeeeecCccccCCCcceeEeCCCCChhHHHHHHHhCCCceeecCCCC-----------cccc
Q 002136 294 --QFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDG-----------TLNE 360 (961)
Q Consensus 294 --~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~v~~~Pah~~~D~~~~~~~~l~~~~~~~~~G-----------~~~~ 360 (961)
-..|.+++||++ +..|||+.++||.+..|||+||.||+|+..||+.|++++||+..++...| .+ -
T Consensus 307 ~gv~~g~~a~~p~~-~e~iPi~~a~~vl~~ygtgavm~vpahd~rd~efA~~y~l~i~~vi~~~~~~~~~~~~~~g~l-i 384 (814)
T COG0495 307 DGVFLGGYAINPVN-GEKIPVWIANYVLMEYGTGAVMGVPAHDERDLEFATKYKLPIKKVIMPEGTVGKKVYEGEGVL-I 384 (814)
T ss_pred cceeccccccCCCC-CCcCCEEEeCcccccccccceecCCCCCchhhHHHHhcCCCeEEEEecCCCcccceeccCceE-e
Confidence 145778899995 69999999999999999999999999999999999999999998886543 32 3
Q ss_pred cccccCCCchHHHHHHHHHHHHHcCCccccccccccCCcccCCCCceeeeeccceeeeccHHHHHHHHHHHcCCceeech
Q 002136 361 VAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPE 440 (961)
Q Consensus 361 ~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~ 440 (961)
+.+.+.|+...+|...|+..|.+ ....|||+++
T Consensus 385 nS~~~~gl~~e~a~~~~~~~l~~--------------------------~~~~q~~v~Y--------------------- 417 (814)
T COG0495 385 NSGGLDGLDYEEAKVKIRCGLVK--------------------------RGLGQWFVNY--------------------- 417 (814)
T ss_pred ccccccCcchhHHHHHHHHhHHH--------------------------hcCCceEEec---------------------
Confidence 45678888888776666644443 4567999987
Q ss_pred hHHHHHHHHHhcCCCceeeeccCCCcccceEEEcCCcccEEEecChHHHHHHHHhh-------------------cCCCc
Q 002136 441 RFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQK-------------------YGKNV 501 (961)
Q Consensus 441 ~~~~~~~~wl~~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~ 501 (961)
.++||++||||+||.|||+.+|+. ++ .+...++++...+++. ...+.
T Consensus 418 -----------~lrdW~~srqRywg~pipii~~e~-~~--~~~~~~d~Lpv~lp~~~~~~gt~~pL~~~~~W~~~s~~~s 483 (814)
T COG0495 418 -----------RLRDWLKSRQRYWGEPIPIIHCED-CG--VVPVPEDWLPVKLPERVRGLGTGSPLPWDEEWVIESLPDS 483 (814)
T ss_pred -----------ccchHHHHHHHHhCCCcceeEccc-CC--cccCchHhcCcccccccccCCCCCCCCCCcceEEEecCCC
Confidence 579999999999999999999964 22 1111222211111110 01235
Q ss_pred ccccCCCceeeeecCCCccccccCCCCCC------hhHHhhcCCcceEeeeccccccHHHHHHHHHhHhc------CCCC
Q 002136 502 EIYQDPDVLDTWFSSALWPFSTLGWPDVS------ADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFT------GSVP 569 (961)
Q Consensus 502 ~~~~~~dvldtWf~S~l~~~~~~~~p~~~------~~~~~~~~P~d~~~~G~Dil~fw~~~~i~~~~~l~------~~~P 569 (961)
+.+|++|+||+|++|+ ||+..+--|... +++|++|||+|++++|.|.+-.|+....+...++. ...|
T Consensus 484 ~~~ret~Tm~~~~~ss-wy~~r~~d~~~~~~~~~~~e~~~yW~PVD~yigG~ehavlHLly~rF~Hkal~d~g~~p~~ep 562 (814)
T COG0495 484 TAYRETDTMDTFIDSS-WYYLRFFDPIFLGELPFDREEFNYWYPVDLYIGGIEHAVLHLLYFRFFHKALFDEGLVPKDEP 562 (814)
T ss_pred ceeeehhhhhHhcccc-cccHhhcChhcCccchhcHHHHhcccChheeecchhHHHHHHHHHHHHHHHhcccCcCCCccc
Confidence 7889999999999999 877654333221 57899999999999999987655555555544443 3578
Q ss_pred ceEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHhCCC-CCccccCHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 570 FSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTANKAFTNKLWNAGKFILQ 648 (961)
Q Consensus 570 fk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~~~-~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~ 648 (961)
|++++++|||+-.+|+|||||+||+|+|+++|++||||++|+|+++.++ .+|++|+++.+++.++|++++|+++.-...
T Consensus 563 f~~L~~qGmVl~~~g~KMSKSKgN~v~p~~~i~~yGADt~Rl~~m~~ap~~~d~~W~e~gv~g~~rfL~r~~~l~~~~~~ 642 (814)
T COG0495 563 FKKLITQGMVLGEEGEKMSKSKGNVVDPEEAVEKYGADTVRLYIMFAAPPEQDLEWSESGVEGARRFLQRVWNLVKEHLE 642 (814)
T ss_pred hhhhhccceEEecCCCccccccCCCCCHHHHHHHhCchHHHHHHHhhCChhhCCCCChhhhHHHHHHHHHHHHHHHHhhh
Confidence 9999999999944899999999999999999999999999999999999 999999999999999999999998755443
Q ss_pred hCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhhhc-CChHHHHHHHHHHHHHhhhHHHHHHhh
Q 002136 649 NLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDK-YFFGDVGRETYDFFWSDFADWYIEASK 727 (961)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~-~~f~~A~~~i~~f~~~~~~n~Yle~~K 727 (961)
....... ......++|++++ +++.|++.+++ +.|+.|+..+|+|+ +...+|.....
T Consensus 643 ~~~~~~~------------------~~~~~~~~~~~h~---~~~~v~~~~e~~~~~nt~i~~~m~l~--N~l~~~~~~~~ 699 (814)
T COG0495 643 KLVEELT------------------KEQGKEDRWLLHR---TIKKVTEDFEARQTFNTAIAALMELL--NALRKYLRRTE 699 (814)
T ss_pred ccccccc------------------chhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhccc
Confidence 2200000 0001457776665 45555566655 89999999999998 34566654322
Q ss_pred hhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhcCCCCceeecCCCCCCC
Q 002136 728 ARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQTSL 789 (961)
Q Consensus 728 ~~l~~~~~~~~~~~~~~~l~~vl~~~l~LL~Pf~P~itEeiw~~L~~~~~si~~~~wP~~~~ 789 (961)
.. ..++..+++.+++||+||+||+|||||+.|++. ++|..++||++++
T Consensus 700 ~~-------------~~~l~~~l~~~v~lLaP~aPH~aEElW~~lg~~-~~v~~~~wP~~de 747 (814)
T COG0495 700 GD-------------RKVLREALETWVRLLAPFAPHIAEELWEELGNE-GFVSNAPWPEPDE 747 (814)
T ss_pred ch-------------HHHHHHHHHHHHHHhcccccHHHHHHHHHhcCC-CceeeCCCCCCCh
Confidence 11 167888999999999999999999999999974 4899999999874
No 28
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.2e-97 Score=821.91 Aligned_cols=614 Identities=27% Similarity=0.423 Sum_probs=484.5
Q ss_pred hhHHHHHHHHHhCCCCCCCCCCCCCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHH
Q 002136 66 TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQL 145 (961)
Q Consensus 66 ~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~ 145 (961)
.+|+.|+++|.+...|..+.+.++++|++.| .|||+|.|||||.+.||+.|+++||+||+||+|++++|||.+|||
T Consensus 34 ~iEk~W~~~~~~~~~~~~~~d~sk~KYiLsM-FPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLP--- 109 (876)
T KOG0435|consen 34 MIEKHWKQYLKDGFPFSKDSDKSKKKYILSM-FPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLP--- 109 (876)
T ss_pred HHHHHHHHHHhcCCccccccccCCCceEEEe-cCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCc---
Confidence 6799999999998888876666777877776 599999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCceEEc
Q 002136 146 VVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (961)
Q Consensus 146 ~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~ 225 (961)
+|+++.+.|++|. .|+..+++.+++||++||++|||+||..|++|+|++++||+|.+||++||.|+.
T Consensus 110 -AENAAiergv~P~------------sWT~~NI~~Mk~Ql~~lg~~FDWdrEiSTC~PdYYKWTQwiFlkLfe~GLAYq~ 176 (876)
T KOG0435|consen 110 -AENAAIERGVHPA------------SWTINNIAKMKQQLKSLGISFDWDREISTCEPDYYKWTQWIFLKLFEKGLAYQA 176 (876)
T ss_pred -hhhHHHhcCCCch------------hhhHHHHHHHHHHHHHcCcccccccccccCCcchhHHHHHHHHHHHHhhhhhcc
Confidence 6777788899986 578899999999999999999999999999999999999999999999999999
Q ss_pred CeeeecCCCCCcccccccccccc-------------------------------------------------CCCeEEEE
Q 002136 226 SYMVNWSPNLQTAVSDLEVEYSE-------------------------------------------------EPGTLYYI 256 (961)
Q Consensus 226 ~~~v~w~p~~~t~lsd~Ev~~~e-------------------------------------------------~~~~~~~~ 256 (961)
+.+|||||.++|+|++++|+-.. ....-+.+
T Consensus 177 Ea~VNWDPvD~TVLAnEQVD~~G~SWRSGA~VEkK~LrQWfikttaYAk~L~d~L~~L~~W~~vk~mQrnWIG~~~G~el 256 (876)
T KOG0435|consen 177 EAEVNWDPVDKTVLANEQVDADGCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGLETLPEWPEVKDMQRNWIGRCDGAEL 256 (876)
T ss_pred ccccccCcccceeecchhhcccCccccccchhhHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhHHHHHHhhcccccceEE
Confidence 99999999999999999995221 11222456
Q ss_pred EEEecCCC---eeEEEEecCCCccCCCcEEEECCCCch------hh------hhcc------CeeeccCCCCCeeeeeec
Q 002136 257 KYRVAGRS---DFLTIATTRPETLFGDVALAVNPQDEH------YS------QFIG------MMAIVPMTYGRHVPIISD 315 (961)
Q Consensus 257 ~~~~~~~~---~~l~v~TtrPeTl~g~~av~v~P~~~~------y~------~l~g------~~~~~P~~~~~~ipii~~ 315 (961)
.|++.++. +.|.|+|||||||+|.+.+++.|++.. |+ .|-+ -.+.+|+ +|+.|||+..
T Consensus 257 ~F~ll~~~~~de~ltv~Tt~Petl~~~~f~vl~~~H~L~~~~~~lkefl~~~~l~~Kg~~lp~~A~Np~-tg~~iPv~~a 335 (876)
T KOG0435|consen 257 MFPLLDDGSNDEILTVYTTRPETLFGASFLVLAPSHSLLDKDSSLKEFLSKSDLPQKGVQLPCQAKNPV-TGRAIPVVVA 335 (876)
T ss_pred EEEeccCCCCCceEEEEecCchhhccceEEEEcCCchhhhhhchHHHhhhhhhccccCcccceeeccCC-CCceeeEEEe
Confidence 78886554 789999999999999999999999853 12 2223 3578999 5999999999
Q ss_pred CccccCCCcceeEeCCCCChhHHHHHHHhCCCceee----cCCCCcccccccccCC-CchHHHHHHHHHHHHHcCCcccc
Q 002136 316 KYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNV----MNKDGTLNEVAGLFRG-LDRFEARKKLWSDLEETGLAVKK 390 (961)
Q Consensus 316 ~~V~~~~GTG~v~~~Pah~~~D~~~~~~~~l~~~~~----~~~~G~~~~~~g~~~G-~~~~~ar~~i~~~L~~~g~~~~~ 390 (961)
+||....|||+|+.+|+|+.+|++++++.++..+.+ ++.+|+.++ .+.+.| +.+.+|+.+|++.++..|+.-..
T Consensus 336 ~~v~~~~gt~a~m~~P~hd~rD~ela~~~~~~~~~~~~~~f~~~~K~~~-~~~~tn~~~~q~a~~~l~~~~~~~g~g~~~ 414 (876)
T KOG0435|consen 336 DYVLDPYGTGAVMGAPGHDQRDKELAQKIGIKWIICIEVIFTNFGKKNE-QKAFTNLDIRQNAALKLFQFAERKGVGGYV 414 (876)
T ss_pred chhccCCCcceeeeccCcccchhHHHhcccceeEEEEeeeecchhhhhc-cccccchhHHHHHHHHHHHHHHhcCCCcce
Confidence 999999999999999999999999999966654433 356666654 355688 66778999999999998864332
Q ss_pred ccccccCCcccCCCCceeeeeccceeeeccHHHHHHHHHHHcCCceeechhHHHHHHHHHhcCCCceeeeccCCCcccce
Q 002136 391 EPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPV 470 (961)
Q Consensus 391 ~~~~~~~p~~~r~~~~v~~~~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~pIP~ 470 (961)
..+ .|+||.||||||||+|||+
T Consensus 415 vs~----------------------------------------------------------kLkDWLiSRQRyWGTPIPi 436 (876)
T KOG0435|consen 415 VSY----------------------------------------------------------KLKDWLISRQRYWGTPIPI 436 (876)
T ss_pred ecc----------------------------------------------------------hhhhhhhhhhhccCCCcce
Confidence 221 5789999999999999999
Q ss_pred EEEcCCcccEEEecChHHH----------------HHHHH-------hhcCCCcccccCCCceeeeecCCCccccccCCC
Q 002136 471 WYIVGKEEEYIVARNADEA----------------LEKAH-------QKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWP 527 (961)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~----------------~~~~~-------~~~~~~~~~~~~~dvldtWf~S~l~~~~~~~~p 527 (961)
.+|.. |+ -++-.++++ +..+. ++|| .+.+||+|+||||+||+ ||+..+-.|
T Consensus 437 vhc~~-cG--~vpVpes~LPV~LP~l~~~~~kG~Pls~~~e~vn~~cP~cg--~pAkRETDTMDTFvDSs-WYYlRylDp 510 (876)
T KOG0435|consen 437 VHCDD-CG--AVPVPESELPVTLPELNDFTPKGPPLSKADEWVNVDCPRCG--EPAKRETDTMDTFVDSS-WYYLRYLDP 510 (876)
T ss_pred EEcCC-CC--cccCcHHHCCcccccccccCCCCCcccchhhheeccCccCC--Ccccccccccchhhccc-eeeEeecCC
Confidence 99953 33 222222221 11111 1333 36889999999999998 887776666
Q ss_pred CCCh-----hHHhhcCCcceEeee--ccccccHHHHHHHHHhHh----cCCCCceEEEEeceEEcC------CC------
Q 002136 528 DVSA-----DDFKKFYPTTMLETG--HDILFFWVARMVMMGIEF----TGSVPFSHVYLHGLIRDS------QG------ 584 (961)
Q Consensus 528 ~~~~-----~~~~~~~P~d~~~~G--~Dil~fw~~~~i~~~~~l----~~~~Pfk~v~~hg~v~d~------~G------ 584 (961)
.+.. ..-++|.|+|+|++| |.+++..++|++.--+.- ....||+.++.+|+|+.. .|
T Consensus 511 kN~e~~~d~a~a~k~MPVDvYIGG~EHAvlHLlYaRF~~kFl~di~~~~t~EPF~~Li~QGmV~G~tf~~~~sG~yl~~~ 590 (876)
T KOG0435|consen 511 KNPEEPFDKAKAKKNMPVDVYIGGKEHAVLHLLYARFIAKFLKDIGVVSTAEPFTKLITQGMVRGKTFRTKESGKYLGPE 590 (876)
T ss_pred CCcccccchhhhhccCceeEEeccHHHHHHHHHHHHHHHHHHhhcCCCcCCCcHHHHHhhhcccceEEecCCCCccCCHH
Confidence 6542 234689999999999 567888888876544332 346899999999999731 11
Q ss_pred -------------------------ccccccCCCccCchhhhhhcChhHHHHHHHhCCC-CCccccCHHHHHHHHHHHHH
Q 002136 585 -------------------------RKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTANKAFTNK 638 (961)
Q Consensus 585 -------------------------~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~~~-~~D~~f~~~~~~~~~~~~nk 638 (961)
+|||||++|+|||.+++++||+|++|+|++..++ ..+++|+++.+.+..+++.+
T Consensus 591 ev~~~nd~~~~~vlk~~~e~~v~t~eKMSKSK~NGVdP~~~v~~yG~D~tRl~ilf~ap~~~~~nW~es~i~Gi~rwl~r 670 (876)
T KOG0435|consen 591 EVQQVNDHQNKFVLKNDKEVVVVTYEKMSKSKHNGVDPADVVLEYGVDTTRLYILFAAPPRDPINWNESAIPGIKRWLQR 670 (876)
T ss_pred HhhhhcCCcceeEecCCCcceeeeHHHhhhcccCCCCHHHHHHHhCchHHHHHHHhhCCcccccccccccchhHHHHHHH
Confidence 7999999999999999999999999999998888 99999999999999999999
Q ss_pred HHHHHHHHHhhCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhhhc-CChHHHHHHHHHHHHHh
Q 002136 639 LWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDK-YFFGDVGRETYDFFWSD 717 (961)
Q Consensus 639 l~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~-~~f~~A~~~i~~f~~~~ 717 (961)
+|++..-+...-++-... + .....+.....++-+.+..|..+++|++.|+. +.++.|+..++.|. +.
T Consensus 671 iw~l~~~~~~ar~~g~~~-d----------~~~~td~~dae~~kl~~~~n~fi~~vt~~~e~~~slNtaIS~~m~lt-N~ 738 (876)
T KOG0435|consen 671 IWALVSQILQARDDGKAK-D----------LKKLTDGFDAETRKLKETYNFFIKQVTEHYEVLFSLNTAISDMMGLT-NA 738 (876)
T ss_pred HHHHHHHHHHHHhcCCcc-c----------ccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HH
Confidence 999886655432111110 0 00001112335678999999999999999985 67999999999987 44
Q ss_pred hhHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhcCCCCceeecCCCCCC
Q 002136 718 FADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQTS 788 (961)
Q Consensus 718 ~~n~Yle~~K~~l~~~~~~~~~~~~~~~l~~vl~~~l~LL~Pf~P~itEeiw~~L~~~~~si~~~~wP~~~ 788 (961)
+...+ |..+..+ ......|+.+..||+|++||+|+|+|..|+....-.....||+++
T Consensus 739 l~~a~----k~~~~h~----------~~~~~al~~lv~mlaP~aPh~asE~Ws~l~~~~~~~~~~~WP~vd 795 (876)
T KOG0435|consen 739 LKKAL----KIVLVHS----------PEFERALEALVIMLAPFAPHVASELWSALANDLSWVSDVKWPEVD 795 (876)
T ss_pred HHHhh----hhhhhcC----------hHHHHHHHHHHHHHhccCchhHHHHHHHHhccccchhccCCccCC
Confidence 43332 2111111 123345778889999999999999999998653211223599886
No 29
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.1e-88 Score=814.16 Aligned_cols=505 Identities=22% Similarity=0.341 Sum_probs=417.8
Q ss_pred CCEEEeCCCCCcCCCCCCchhhHh-HHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHH
Q 002136 90 DPFVISMPPPNVTGSLHMGHAMFV-TLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTK 168 (961)
Q Consensus 90 ~~f~i~~ppPy~nG~LHiGHa~~~-~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~ 168 (961)
++|+|++|||||||.|||||++++ +++|+++||+||+|++|+|++|+|+||++|+.+++ ++|+++.
T Consensus 3 ~~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~----~~g~~~~--------- 69 (556)
T PRK12268 3 MRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAK----KEGVTPQ--------- 69 (556)
T ss_pred CcEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHH----HcCCCHH---------
Confidence 579999999999999999999997 99999999999999999999999999999877664 4587754
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCceEEcCeeeecCCCCCcccccccccccc
Q 002136 169 RVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE 248 (961)
Q Consensus 169 ~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~w~p~~~t~lsd~Ev~~~e 248 (961)
+|++++.+.|.++|++||+++|+ .+.|+|++|.+.++++|.+|+++|+||++.++|+|||.|+|+|++..|.
T Consensus 70 ---~~~~~~~~~~~~~~~~l~i~~d~--~~~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~l~~~~v~--- 141 (556)
T PRK12268 70 ---ELADKYHEEHKEDFKKLGISYDL--FTRTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAYCPSDGRFLPDRYVE--- 141 (556)
T ss_pred ---HHHHHHHHHHHHHHHHcCCcCCC--CcCCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEecCCCCcCcCcccee---
Confidence 46688999999999999998774 4569999999999999999999999999999999999999999985441
Q ss_pred CCCeEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCchhhhhccCeeeccCCCCCeeeeeecCccccCCCcceeE
Q 002136 249 EPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLK 328 (961)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~v~ 328 (961)
|
T Consensus 142 --------------------------------------------------------------------------g----- 142 (556)
T PRK12268 142 --------------------------------------------------------------------------G----- 142 (556)
T ss_pred --------------------------------------------------------------------------c-----
Confidence 1
Q ss_pred eCCCCChhHHHHHHHhCCCceeecCCCCcccccccccCCCchHHHHHHHHHHHHHcCCccccccccccCCcccCCCCcee
Q 002136 329 ISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIE 408 (961)
Q Consensus 329 ~~Pah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~ 408 (961)
.||.|+.. +.+|.+||.||.. .++.++..|+|+|||+++|
T Consensus 143 ~cp~c~~~----------------~~~G~~ce~cg~~------------------------~~~~~l~~p~~~~~~~~~e 182 (556)
T PRK12268 143 TCPYCGYE----------------GARGDQCDNCGAL------------------------LDPTDLINPRSKISGSTPE 182 (556)
T ss_pred cCCCCCCc----------------ccCCchhhhcccc------------------------CChHHhcCCccccCCCcCe
Confidence 14544422 3579999999864 2334556799999999999
Q ss_pred eeeccceeeeccHHHHHHHHHHHcCCceeechhHHHHHHHHHh-cCCCceeeeccCCCcccceEEEcCCcccEEEecChH
Q 002136 409 PLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS-NIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNAD 487 (961)
Q Consensus 409 ~~~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~-~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~ 487 (961)
++.++||||++++++++++++++ ++.++|+..++++.+||+ +++|||||||++||+||| |++.
T Consensus 183 ~~~~~qwF~~l~~~~~~l~~~~~--~~~~~p~~~~~~~~~~l~~~l~Dw~ISR~~~WGipiP-~~~~------------- 246 (556)
T PRK12268 183 FRETEHFFLDLPAFAERLRAWIE--SSGDWPPNVLNFTLNWLKEGLKPRAITRDLDWGIPVP-WPGF------------- 246 (556)
T ss_pred EEecceEEEEhHHHHHHHHHHHh--hccCCCHHHHHHHHHHHhCCCCCcCceeeCCCCeeCC-CCCC-------------
Confidence 99999999999999999999997 467999999999999998 999999999999999999 6541
Q ss_pred HHHHHHHhhcCCCcccccCCCceeeeecCCCccccccC-CCCC--ChhHHhhcC----CcceEeeeccccccHHHHHHHH
Q 002136 488 EALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLG-WPDV--SADDFKKFY----PTTMLETGHDILFFWVARMVMM 560 (961)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~dvldtWf~S~l~~~~~~~-~p~~--~~~~~~~~~----P~d~~~~G~Dil~fw~~~~i~~ 560 (961)
+..++|+||++.+.|++..+ |... +..+|..|| |.+++++|+||++||.....++
T Consensus 247 ------------------~~~~iyvW~da~~~y~~~~~~~~~~~g~~~~~~~~w~ds~~~~~~~~G~D~~~Fh~~~~p~~ 308 (556)
T PRK12268 247 ------------------EGKVFYVWFDAVIGYISASKEWAERTGDPEAWKEFWLDPETKSYYFIGKDNIPFHSIIWPAM 308 (556)
T ss_pred ------------------CCcEEEEeehHhhHHHHHHHHHHHhcCCchHHHHHhCCCCCeEEEEEeeccCcchHHHHHHH
Confidence 23689999998777765433 2221 125688788 7789999999999876543333
Q ss_pred HhHhc--CCCCceEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHhCCC-CCccccCHHHHHH--HHHH
Q 002136 561 GIEFT--GSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTA--NKAF 635 (961)
Q Consensus 561 ~~~l~--~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~~~-~~D~~f~~~~~~~--~~~~ 635 (961)
..... .+.| +++++||||+ .+|+|||||+||+|+|.|+|++||+|++||||++.++ ++|++|+++.+.. ++++
T Consensus 309 l~~~~~~~~~P-~~v~~~G~v~-~~G~KMSKS~GN~I~p~dli~~yGaDalR~~ll~~~~~~~d~~f~~~~~~~~~~~~~ 386 (556)
T PRK12268 309 LLGSGEPLKLP-DEIVSSEYLT-LEGGKFSKSRGWGIWVDDALERYPPDYLRYYLAANAPENSDTDFTWEEFVRRVNSEL 386 (556)
T ss_pred HHhcCCCCCCC-CEeeccCCEE-ECCeeeccCCCcccCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHhHHh
Confidence 22222 4567 7999999998 5899999999999999999999999999999999887 9999999999865 6789
Q ss_pred HHHHHHHHHHHHhhCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHH
Q 002136 636 TNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFW 715 (961)
Q Consensus 636 ~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~i~~f~~ 715 (961)
++++||.+.++...+..... + ......++..|+|++++++.+++.++++|++|+|+.|++.+++|+
T Consensus 387 ~~~l~n~~~r~~~~~~~~~~----------~---~~~~~~~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~l~~~~- 452 (556)
T PRK12268 387 ADKYGNLVNRVLSFIEKYFG----------G---IVPPGELGDEDRELIAEAEALFKEVGELLEAGEFKKALEEIMELA- 452 (556)
T ss_pred hhhHHHHHHHHHHHHHHhcC----------C---cCCCCcCCcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-
Confidence 99999987665443211000 0 000123466799999999999999999999999999999999998
Q ss_pred HhhhHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhcCCCCceeecCCCCC
Q 002136 716 SDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQT 787 (961)
Q Consensus 716 ~~~~n~Yle~~K~~l~~~~~~~~~~~~~~~l~~vl~~~l~LL~Pf~P~itEeiw~~L~~~~~si~~~~wP~~ 787 (961)
++||+|++..|+|...+++....+.+..++..+++.+++||+|||||+|||||+.|+. +++..+.||..
T Consensus 453 -~~~n~yi~~~kpw~~~~~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~aeei~~~Lg~--~~~~~~~w~~~ 521 (556)
T PRK12268 453 -REANKYLDEKAPWKLAKTDRERAATVLYTALNLVRLLAVLLYPFLPFSAQKIWEMLGG--ENIEKLTWESL 521 (556)
T ss_pred -HHHHHHHHcCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHhCC--CCCcccchhhh
Confidence 6999999999999765434334456667777899999999999999999999999985 25666788764
No 30
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=5.5e-88 Score=767.29 Aligned_cols=377 Identities=63% Similarity=1.155 Sum_probs=347.4
Q ss_pred CCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHH
Q 002136 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKR 169 (961)
Q Consensus 90 ~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~ 169 (961)
++|+|++|||||||.|||||+++++++|+++||+||+|++|+|++|||+||+|||.++++.+...+.++.++++++|++.
T Consensus 1 ~~f~i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~ 80 (382)
T cd00817 1 PVFVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEK 80 (382)
T ss_pred CcEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999887666666778999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCceEEcCeeeecCCCCCccccccccccccC
Q 002136 170 VWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEE 249 (961)
Q Consensus 170 ~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~w~p~~~t~lsd~Ev~~~e~ 249 (961)
|++|++++++.++++|++||+++||++.+.|+||.|.+.|+++|.+|+++|+||++.++|+|||.|+|+||++||
T Consensus 81 ~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~t~l~~~ev----- 155 (382)
T cd00817 81 CWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIEV----- 155 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEeeeeEEeecCCcCCCCCcchh-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988432
Q ss_pred CCeEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCchhhhhccCeeeccCCCCCeeeeeecCccccCCCcceeEe
Q 002136 250 PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKI 329 (961)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~v~~ 329 (961)
T Consensus 156 -------------------------------------------------------------------------------- 155 (382)
T cd00817 156 -------------------------------------------------------------------------------- 155 (382)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCChhHHHHHHHhCCCceeecCCCCcccccccccCCCchHHHHHHHHHHHHHcCCccccccccccCCcccCCCCceee
Q 002136 330 SPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEP 409 (961)
Q Consensus 330 ~Pah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~ 409 (961)
|+|||+++++
T Consensus 156 ----------------------------------------------------------------------c~~cg~~~~~ 165 (382)
T cd00817 156 ----------------------------------------------------------------------CSRSGDVIEP 165 (382)
T ss_pred ----------------------------------------------------------------------cccCCCeEEE
Confidence 7889999999
Q ss_pred eeccceeeeccHHHHHHHHHHHcCCceeechhHHHHHHHHHhcCCCceeeeccCCCcccceEEEcCCcccEEEecChHHH
Q 002136 410 LVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEA 489 (961)
Q Consensus 410 ~~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~ 489 (961)
+.++||||++++++++++++++++++.|+|++.++++.+||++++|||||||++||+|||+|+|.. ++.+++.....+.
T Consensus 166 ~~~~qwf~~l~~~~~~l~~~~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISR~~~WGipvP~~~~~~-~~~~~~~~~~~~~ 244 (382)
T cd00817 166 LLKPQWFVKVKDLAKKALEAVKEGDIKFVPERMEKRYENWLENIRDWCISRQLWWGHRIPAWYCKD-GGHWVVAREEDEA 244 (382)
T ss_pred EecCeeEEehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhhCccceeeeccccCCccceEEeCC-CCcEEecchhHHH
Confidence 999999999999999999999988899999999999999999999999999999999999999964 4556665555444
Q ss_pred HHHHH----hhcCCCcccccCCCceeeeecCCCccccccCCCCCChhHHhhcCCcceEeeeccccccHHHHHHHHHhHhc
Q 002136 490 LEKAH----QKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFT 565 (961)
Q Consensus 490 ~~~~~----~~~~~~~~~~~~~dvldtWf~S~l~~~~~~~~p~~~~~~~~~~~P~d~~~~G~Dil~fw~~~~i~~~~~l~ 565 (961)
...+. .+++ ...++++++|+||||||+++|+++++||.+. ++|+++||+|++++|+||++||+.++++++..+.
T Consensus 245 ~~~~~~~~~~~~~-~~~~~~~~~v~dvWfds~~~~~~~~~~~~~~-~~~~~~~p~d~~~~G~D~~~~h~~~~l~~~~~~~ 322 (382)
T cd00817 245 IDKAAPEACVPCG-GEELKQDEDVLDTWFSSSLWPFSTLGWPEET-KDLKKFYPTSLLVTGHDIIFFWVARMIMRGLKLT 322 (382)
T ss_pred HHHhccccccCCC-ccCeeECCceeeeeecCCCcHHHHhCCCCcc-hhHhhcCCCCeeeeecCcCchHHHHHHHHHHHhh
Confidence 43331 1222 3468899999999999999999999999875 6799999999999999999999999999999988
Q ss_pred CCCCceEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHhCCC-CCcccc
Q 002136 566 GSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSL 624 (961)
Q Consensus 566 ~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~~~-~~D~~f 624 (961)
|..||+++++||+|+|.+|+|||||+||+|+|.|++++||+|++|||+++.++ ++|.+|
T Consensus 323 g~~p~~~v~~hg~v~~~~g~KMSKS~Gn~v~~~dll~~~g~Da~R~~ll~~~~~~~D~~f 382 (382)
T cd00817 323 GKLPFKEVYLHGLVRDEDGRKMSKSLGNVIDPLDVIDGYGADALRFTLASAATQGRDINL 382 (382)
T ss_pred CCCchHHeEeeeeEECCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHhCCCccCCCCC
Confidence 99999999999999999999999999999999999999999999999999887 999887
No 31
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=100.00 E-value=9.6e-87 Score=793.16 Aligned_cols=490 Identities=27% Similarity=0.395 Sum_probs=418.8
Q ss_pred EEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHH
Q 002136 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVW 171 (961)
Q Consensus 92 f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~ 171 (961)
|+|++|||||||.|||||+++++.+|+++||+||+|++|+|++|||+||++|+.+++ ++|+++.
T Consensus 1 ~~it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~----~~g~~~~------------ 64 (530)
T TIGR00398 1 ILITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAE----QEGLTPK------------ 64 (530)
T ss_pred CEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHH----HcCCCHH------------
Confidence 689999999999999999999999999999999999999999999999999876654 4677754
Q ss_pred HHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCceEEcCeeeecCCCCCccccccccccccCCC
Q 002136 172 EWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPG 251 (961)
Q Consensus 172 ~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~w~p~~~t~lsd~Ev~~~e~~~ 251 (961)
++++.+.+.+++++++||+++|+. ..|+++.|.+.++++|.+|+++|+||++++.|+|||.|+|+|+|.+|+
T Consensus 65 e~~~~~~~~~~~~l~~LgI~~D~~--~~t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~~~l~~~~v~------ 136 (530)
T TIGR00398 65 ELVDKYHEEFKDDWKWLNISFDRF--IRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECEMFLPDRYVE------ 136 (530)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCC--ccCCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCCcCCchhhhc------
Confidence 345788999999999999999842 348999999999999999999999999999999999999999996552
Q ss_pred eEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCchhhhhccCeeeccCCCCCeeeeeecCccccCCCcceeEeCC
Q 002136 252 TLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISP 331 (961)
Q Consensus 252 ~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~v~~~P 331 (961)
| .||
T Consensus 137 -----------------------------------------------------------------------g-----~cp 140 (530)
T TIGR00398 137 -----------------------------------------------------------------------G-----TCP 140 (530)
T ss_pred -----------------------------------------------------------------------C-----CCC
Confidence 1 267
Q ss_pred CCChhHHHHHHHhCCCceeecCCCCcccccccccCCCchHHHHHHHHHHHHHcCCccccccccccCCcccCCCCceeeee
Q 002136 332 GHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLV 411 (961)
Q Consensus 332 ah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~ 411 (961)
.|+.. |.+|.+|++||.+ .++.++.+|+|+|||+++|++.
T Consensus 141 ~c~~~----------------~~~g~~ce~cg~~------------------------~~~~~l~~p~~~~~~~~~e~~~ 180 (530)
T TIGR00398 141 KCGSE----------------DARGDHCEVCGRH------------------------LEPTELINPRCKICGAKPELRD 180 (530)
T ss_pred CCCCc----------------ccccchhhhcccc------------------------CCHHHhcCCccccCCCcceEEe
Confidence 66664 3579999999863 5777889999999999999999
Q ss_pred ccceeeeccHHHHHHHHHHHcCC-ceeechhHHHHHHHHHhc-CCCceeeeccC-CCcccceEEEcCCcccEEEecChHH
Q 002136 412 SKQWFVTMEPLAEKALHAVEKGE-LTIMPERFEKIYNHWLSN-IKDWCISRQLW-WGHRIPVWYIVGKEEEYIVARNADE 488 (961)
Q Consensus 412 ~~qwF~~~~~~~~~~~~~~~~~~-~~~~P~~~~~~~~~wl~~-l~DW~ISRq~~-WG~pIP~~~~~~~~~~~~~~~~~~~ 488 (961)
++||||+++++++++++++++++ ..+.|++.++.+.+||++ ++|||||||++ ||+|||.|
T Consensus 181 ~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~iSR~~~~WGipvP~~----------------- 243 (530)
T TIGR00398 181 SEHYFFRLSAFEKELEEWIRKNPESGSPASNVKNKAQNWLKGGLKDLAITRDLVYWGIPVPND----------------- 243 (530)
T ss_pred cceEEEEhHHHHHHHHHHHHhCCccCCCcHHHHHHHHHHHhCCCCCccccCcCCCCCeeCCCC-----------------
Confidence 99999999999999999998543 456688899999999987 99999999999 99999964
Q ss_pred HHHHHHhhcCCCcccccCCCceeeeecCCCccccccCCCCCChhHHhhcCCcc-----eEeeeccccccHHHHH--HHHH
Q 002136 489 ALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTT-----MLETGHDILFFWVARM--VMMG 561 (961)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~dvldtWf~S~l~~~~~~~~p~~~~~~~~~~~P~d-----~~~~G~Dil~fw~~~~--i~~~ 561 (961)
+.+|+|+|||+.++|++..+++.....+|++|||.+ ++++|+||++||.... ++++
T Consensus 244 -----------------~~~~~yvW~da~~~y~~~~~~~~~~~~~~~~~w~~~~~~~~v~~~G~Di~~~h~~~~~a~l~~ 306 (530)
T TIGR00398 244 -----------------PNKVVYVWFDALIGYISSLGILSGDTEDWKKWWNNDEDAELIHFIGKDIVRFHTIYWPAMLMG 306 (530)
T ss_pred -----------------CCcEEEEeecchHHhHhhhccccCChhhHHHhCCCCCCceEEEEEecccchhHHHHHHHHHHh
Confidence 126899999999999988888764336799999999 9999999999753332 2333
Q ss_pred hHhcCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHhCCC-CCccccCHHHHHHH--HHHHHH
Q 002136 562 IEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTAN--KAFTNK 638 (961)
Q Consensus 562 ~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~~~-~~D~~f~~~~~~~~--~~~~nk 638 (961)
+ |..||+++++||||++ +|+|||||+||+|+|.|++++||+|++||||++.++ ++|++|+++.+... ++++++
T Consensus 307 ~---~~~~~~~~~~~g~v~~-~g~KmSKS~Gn~i~~~d~i~~~g~D~lR~~l~~~~~~~~d~~f~~~~l~~~~n~~l~~~ 382 (530)
T TIGR00398 307 L---GLPLPTQVFSHGYLTV-EGGKMSKSLGNVVDPSDLLARFGADILRYYLLKERPLGKDGDFSWEDFVERVNADLANK 382 (530)
T ss_pred C---CCCCCCEEEeeccEEE-CCceecccCCceecHHHHHHHcCchHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 3 2356799999999995 599999999999999999999999999999999877 99999999999874 789999
Q ss_pred HHHHHHHHHhhCCC-CCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHh
Q 002136 639 LWNAGKFILQNLPS-QNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSD 717 (961)
Q Consensus 639 l~N~~rf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~i~~f~~~~ 717 (961)
+||+++++.+.+.. ... . .+ ........|+|++++++.+++.+.++|++|+|+.|++.+++|+ +
T Consensus 383 l~n~~~r~~~~~~~~~~~-----------~-~~-~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~--~ 447 (530)
T TIGR00398 383 LGNLLNRTLGFIKKYFNG-----------V-LP-SEDITDEEDKKLLKLINEALEQIDEAIESFEFRKALREIMKLA--D 447 (530)
T ss_pred HHHHHHHHHHHHHHhcCC-----------c-CC-CCcccchhhHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--H
Confidence 99998766543321 100 0 00 0012346799999999999999999999999999999999998 6
Q ss_pred hhHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhcCC
Q 002136 718 FADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR 775 (961)
Q Consensus 718 ~~n~Yle~~K~~l~~~~~~~~~~~~~~~l~~vl~~~l~LL~Pf~P~itEeiw~~L~~~ 775 (961)
++|+|++.+|||.+.+++ ..+++++.++.++++.++++|+|||||+||+||+.|+..
T Consensus 448 ~~n~Yi~~~kpw~~~~~~-~~~~~~~~~l~~~l~~l~~ll~P~~P~~ae~i~~~L~~~ 504 (530)
T TIGR00398 448 RGNKYIDENKPWELFKQS-PRLKELLAVCSMLIRVLSILLYPIMPKLSEKILKFLNFE 504 (530)
T ss_pred HHHHHHhcCCChhhcCCh-HHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhCCC
Confidence 899999999999877533 356788999999999999999999999999999999853
No 32
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.3e-84 Score=786.84 Aligned_cols=484 Identities=23% Similarity=0.371 Sum_probs=412.0
Q ss_pred CCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHH
Q 002136 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKR 169 (961)
Q Consensus 90 ~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~ 169 (961)
++|+|++|||||||.|||||+++++++|+++||+||+|++|+|++|||+||+||+.+++ +.|+++.+
T Consensus 2 ~~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~----~~g~~p~e--------- 68 (673)
T PRK00133 2 RKILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAE----KEGITPEE--------- 68 (673)
T ss_pred CCEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHH----HcCCCHHH---------
Confidence 46999999999999999999999999999999999999999999999999999877664 46888653
Q ss_pred HHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCceEEcCeeeecCCCCCccccccccccccC
Q 002136 170 VWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEE 249 (961)
Q Consensus 170 ~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~w~p~~~t~lsd~Ev~~~e~ 249 (961)
|+++|++.++++|++||+++|+ .+.|+++.|.+.|+++|.+|+++|+||++.++|+|||.|+++|+|.+|+
T Consensus 69 ---~~~~~~~~~~~~~~~l~i~~d~--f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~---- 139 (673)
T PRK00133 69 ---LIARYHAEHKRDFAGFGISFDN--YGSTHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMFLPDRFVK---- 139 (673)
T ss_pred ---HHHHHHHHHHHHHHHhCCCCCC--CccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCCccchhee----
Confidence 4588999999999999999984 2348999999999999999999999999999999999999999995441
Q ss_pred CCeEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCchhhhhccCeeeccCCCCCeeeeeecCccccCCCcceeEe
Q 002136 250 PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKI 329 (961)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~v~~ 329 (961)
| .
T Consensus 140 -------------------------------------------------------------------------g-----~ 141 (673)
T PRK00133 140 -------------------------------------------------------------------------G-----T 141 (673)
T ss_pred -------------------------------------------------------------------------c-----c
Confidence 2 2
Q ss_pred CCCCChhHHHHHHHhCCCceeecCCCCcccccccccCCCchHHHHHHHHHHHHHcCCccccccccccCCcccCCCCceee
Q 002136 330 SPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEP 409 (961)
Q Consensus 330 ~Pah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~ 409 (961)
||.|+.. |.+|..|+.||.+ .++.+...|+|.+||+++|+
T Consensus 142 cp~C~~~----------------d~~g~~ce~cg~~------------------------~~~~~l~~~~~~~~g~~~e~ 181 (673)
T PRK00133 142 CPKCGAE----------------DQYGDNCEVCGAT------------------------YSPTELINPKSAISGATPVL 181 (673)
T ss_pred cCCCCCc----------------ccCCchhhhcccc------------------------CChHhhcCCccccCCCcceE
Confidence 5655544 3579999999964 34445667999999999999
Q ss_pred eeccceeeeccHHHHHHHHHHHcCCceeechhHHHHHHHHHh-cCCCceeeeccCC-CcccceEEEcCCcccEEEecChH
Q 002136 410 LVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS-NIKDWCISRQLWW-GHRIPVWYIVGKEEEYIVARNAD 487 (961)
Q Consensus 410 ~~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~-~l~DW~ISRq~~W-G~pIP~~~~~~~~~~~~~~~~~~ 487 (961)
+.++||||+++++++.+++++++ +..| |++.++.+.+||+ +++|||||||++| |+|+| +
T Consensus 182 ~~~~~~f~~l~~~~~~l~~~~~~-~~~~-~~~~~~~~~~~l~~~l~d~~ISR~~~W~GipvP-----~------------ 242 (673)
T PRK00133 182 KESEHFFFKLPRFEEFLKEWITR-SGEL-QPNVANKMKEWLEEGLQDWDISRDAPYFGFEIP-----G------------ 242 (673)
T ss_pred EecceEEEEHHHHHHHHHHHHhc-CCCC-CHHHHHHHHHHHhCCCcccceeeeCCccceECC-----C------------
Confidence 99999999999999999999964 3455 8899999999995 6999999999999 99999 1
Q ss_pred HHHHHHHhhcCCCcccccCCCceeeeecCCCcccccc-CCCCC-ChhHHhhcCCcc-----eEeeecccccc----HHHH
Q 002136 488 EALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTL-GWPDV-SADDFKKFYPTT-----MLETGHDILFF----WVAR 556 (961)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~dvldtWf~S~l~~~~~~-~~p~~-~~~~~~~~~P~d-----~~~~G~Dil~f----w~~~ 556 (961)
.+..|+|||||+.++|++.. +|+.. +.+.|+.|||.+ ++++|+||++| |+++
T Consensus 243 -----------------~~~~~iyVW~dal~~Yl~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~wpa~ 305 (673)
T PRK00133 243 -----------------APGKVFYVWLDAPIGYISSTKNLCDKRGGLDWDEYWKKDSDTELYHFIGKDIIYFHTLFWPAM 305 (673)
T ss_pred -----------------CCCeEEEEcccchhhhhHHHhhhcccccchhHHHhcCCCCCceEEEEEeecchhHHHHHHHHH
Confidence 02368999999999998866 67754 225699999433 89999999995 7776
Q ss_pred HHHHHhHhcCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHhCCC-C-CccccCHHHHHH--H
Q 002136 557 MVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-G-QDLSLSIERLTA--N 632 (961)
Q Consensus 557 ~i~~~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~~~-~-~D~~f~~~~~~~--~ 632 (961)
+++.++ .+| ++|++||||++ +|+|||||+||+|+|.|+|++||+|++||||++.++ + +|.+|+++.+.. +
T Consensus 306 l~a~g~----~lP-~~v~~hg~v~~-~G~KMSKS~GNvV~p~dlie~ygaDalR~~ll~~~~~~~~D~~Fs~~~~~~~~n 379 (673)
T PRK00133 306 LEGAGY----RLP-TNVFAHGFLTV-EGAKMSKSRGTFIWARTYLDHLDPDYLRYYLAAKLPETIDDLDFNWEDFQQRVN 379 (673)
T ss_pred HHhCCC----CCC-CEEeeeccEEe-cCCcccccCCcccCHHHHHHHcCchHHHHHHHhcCCCCCCCCCCCHHHHHHHHH
Confidence 555332 345 99999999996 999999999999999999999999999999999888 8 999999999865 7
Q ss_pred HHHHHHHHHHHHHHHhhCCC-CCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhhhcCChHHHHHHHH
Q 002136 633 KAFTNKLWNAGKFILQNLPS-QNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETY 711 (961)
Q Consensus 633 ~~~~nkl~N~~rf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~i~ 711 (961)
+++++++||++.++...+.. +.. . ......|+|++++++.+++.+.++|++|+|+.|++.++
T Consensus 380 ~~l~~~l~Nl~~R~~~~~~k~~~~--------------~---~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~ 442 (673)
T PRK00133 380 SELVGKVVNFASRTAGFINKRFDG--------------K---LPDALADPELLEEFEAAAEKIAEAYEAREFRKALREIM 442 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC--------------C---CCCCcccHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 78999999988776543311 111 0 01235699999999999999999999999999999999
Q ss_pred HHHHHhhhHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhcC
Q 002136 712 DFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRK 774 (961)
Q Consensus 712 ~f~~~~~~n~Yle~~K~~l~~~~~~~~~~~~~~~l~~vl~~~l~LL~Pf~P~itEeiw~~L~~ 774 (961)
+|+ ++||+|++..|||...+++.+....+..+++++++.+++||+|||||+||+||+.|+.
T Consensus 443 ~l~--~~~N~yi~~~kpw~~~~~~~~~~~~~l~~~~~~l~~l~~lL~Pf~P~~ae~i~~~Lg~ 503 (673)
T PRK00133 443 ALA--DFANKYVDDNEPWKLAKQDGERLQAVCSVGLNLFRALAIYLKPVLPELAERAEAFLNL 503 (673)
T ss_pred HHH--HHHHHHHHhcCChhhhcCCHHHHHHHHHHHHHHHHHHHHHhhChhchHHHHHHHHhCC
Confidence 996 7999999999999655444445667778888899999999999999999999999985
No 33
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.8e-84 Score=785.84 Aligned_cols=468 Identities=24% Similarity=0.354 Sum_probs=399.3
Q ss_pred CCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHH
Q 002136 89 SDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTK 168 (961)
Q Consensus 89 ~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~ 168 (961)
+++|+|++|+|||||.|||||+++++++|+++||+||+|++|+|++|||+||++|+. .+++.|+++.+
T Consensus 3 ~~~~~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~----~A~~~g~~~~e-------- 70 (648)
T PRK12267 3 KKTFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQ----AAEKAGKTPQE-------- 70 (648)
T ss_pred CCCEEEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHH----HHHHcCCCHHH--------
Confidence 357999999999999999999999999999999999999999999999999999654 44567888653
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCccC-CCCCccCCChhhHHHHHHHHHHHHhcCceEEcCeeeecCCCCCccccccccccc
Q 002136 169 RVWEWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYS 247 (961)
Q Consensus 169 ~~~~~~~~~~~~i~~~l~~lG~s~D-w~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~w~p~~~t~lsd~Ev~~~ 247 (961)
+++++.+.|+++|++||+++| |.| |+|+.|.+.|+++|.+|+++|+||++++.++|||.|++.|+|.++.
T Consensus 71 ----~~d~~~~~fk~~l~~lgI~~D~f~r---Tt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l~-- 141 (648)
T PRK12267 71 ----YVDEISAGFKELWKKLDISYDKFIR---TTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETFFTESQLV-- 141 (648)
T ss_pred ----HHHHHHHHHHHHHHHcCCCCCCCee---CCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCccCChHHhc--
Confidence 457899999999999999999 444 8999999999999999999999999999999999999999885431
Q ss_pred cCCCeEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCchhhhhccCeeeccCCCCCeeeeeecCccccCCCccee
Q 002136 248 EEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVL 327 (961)
Q Consensus 248 e~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~v 327 (961)
T Consensus 142 -------------------------------------------------------------------------------- 141 (648)
T PRK12267 142 -------------------------------------------------------------------------------- 141 (648)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeCCCCChhHHHHHHHhCCCceeecCCCCcccccccccCCCchHHHHHHHHHHHHHcCCccccccccccCCcccCCCCce
Q 002136 328 KISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVI 407 (961)
Q Consensus 328 ~~~Pah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v 407 (961)
..|+|+|||+++
T Consensus 142 --------------------------------------------------------------------~~~~c~~cg~~~ 153 (648)
T PRK12267 142 --------------------------------------------------------------------DGGKCPDCGREV 153 (648)
T ss_pred --------------------------------------------------------------------cCCcCCCCCCcC
Confidence 015799999999
Q ss_pred eeeeccceeeeccHHHHHHHHHHHcCCceeechhHHHHHH-HHHhc-CCCceeeecc-CCCcccceEEEcCCcccEEEec
Q 002136 408 EPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYN-HWLSN-IKDWCISRQL-WWGHRIPVWYIVGKEEEYIVAR 484 (961)
Q Consensus 408 ~~~~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~-~wl~~-l~DW~ISRq~-~WG~pIP~~~~~~~~~~~~~~~ 484 (961)
+++.++||||++++++++++++++++...+.|+..++.+. +||++ ++|||||||+ .||+|||.+
T Consensus 154 e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~~l~D~~ISR~~~~WGipvP~~------------- 220 (648)
T PRK12267 154 ELVKEESYFFRMSKYQDRLLEYYEENPDFIQPESRKNEMINNFIKPGLEDLSISRTSFDWGIPVPFD------------- 220 (648)
T ss_pred eEEecceEEEEcHHHHHHHHHHHhhCCcccCCHHHHHHHHHHHhhCCCCCcccCCCCCCcceECCCC-------------
Confidence 9999999999999999999999987655578999999888 99985 9999999996 799999931
Q ss_pred ChHHHHHHHHhhcCCCcccccCCCceeeeecCCCccccccCCCCCChhHHhhcCCcceEeeeccccccHHHHHHHHHhHh
Q 002136 485 NADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEF 564 (961)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~dvldtWf~S~l~~~~~~~~p~~~~~~~~~~~P~d~~~~G~Dil~fw~~~~i~~~~~l 564 (961)
+.+|+||||||+++|++.++||..+.++|++|||.|++++|+||++||.....++...
T Consensus 221 ---------------------~~~v~yVWfDA~~~y~s~~~~~~~~~~~~~~~wp~~~~~~GkDii~fH~i~wpa~l~~- 278 (648)
T PRK12267 221 ---------------------PKHVVYVWIDALLNYITALGYGSDDDELFKKFWPADVHLVGKDILRFHAIYWPIMLMA- 278 (648)
T ss_pred ---------------------CCCEEEEcccchHHHHHHcCCCCCCchHHHhhcccceEEEeeeecchhHHHHHHHHHh-
Confidence 2479999999999999999998655467999999999999999999754432222111
Q ss_pred cCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHhCCC-CCccccCHHHHHH--HHHHHHHHHH
Q 002136 565 TGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTA--NKAFTNKLWN 641 (961)
Q Consensus 565 ~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~~~-~~D~~f~~~~~~~--~~~~~nkl~N 641 (961)
.|..||++|++|||++ .+|+|||||+||+|+|.+++++||+|++||||++..+ ++|.+|+++.+.. ++.+++++||
T Consensus 279 ~~~~~p~~v~~hg~l~-~eg~KMSKS~GN~i~p~d~l~~ygaD~lR~~L~~~~~~~~D~~fs~~~~~~~~n~~l~~~lgN 357 (648)
T PRK12267 279 LGLPLPKKVFAHGWWL-MKDGKMSKSKGNVVDPEELVDRYGLDALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGN 357 (648)
T ss_pred CCCCCCcEEEecceEE-ECCceecccCCcccCHHHHHHHcCCcHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhH
Confidence 2455779999999999 5899999999999999999999999999999998877 9999999999976 7789999999
Q ss_pred HHHHHHhhCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhhHH
Q 002136 642 AGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADW 721 (961)
Q Consensus 642 ~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~i~~f~~~~~~n~ 721 (961)
++.++...+..... + .......++..|+|++++++.+++++.++|++|+|+.|++.+++|+ +.+|+
T Consensus 358 l~~R~~~~~~~~~~----------~--~~p~~~~~~~~D~~ll~~l~~~~~~v~~~~e~~~~~~al~~i~~~~--~~~N~ 423 (648)
T PRK12267 358 LLNRTVAMINKYFD----------G--EIPAPGNVTEFDEELIALAEETLKNYEELMEELQFSRALEEVWKLI--SRANK 423 (648)
T ss_pred HHHHHHHHHHHhcC----------C--cCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHH
Confidence 98766543321100 0 0000123456799999999999999999999999999999999997 58999
Q ss_pred HHHHhhhhhccCC--ChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhcCC
Q 002136 722 YIEASKARLYRSE--YDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR 775 (961)
Q Consensus 722 Yle~~K~~l~~~~--~~~~~~~~~~~l~~vl~~~l~LL~Pf~P~itEeiw~~L~~~ 775 (961)
|++..|||....+ +.....++..+++.+++.+++||+|||||+||+||+.|+..
T Consensus 424 Yi~~~kpW~~~~~~~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~ae~i~~~Lg~~ 479 (648)
T PRK12267 424 YIDETAPWVLAKDEGKKERLATVMYHLAESLRKVAVLLSPFMPETSKKIFEQLGLE 479 (648)
T ss_pred HHHhCCChhhhcCcccHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHcCCC
Confidence 9999999965432 22345567788889999999999999999999999999853
No 34
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.6e-85 Score=726.84 Aligned_cols=705 Identities=23% Similarity=0.375 Sum_probs=546.3
Q ss_pred CCCh--hhHHHHHHHHHhCCCCCCCCC----CCCCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCC
Q 002136 62 TFDF--TSEERIYNWWESQGYFKPNFE----RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (961)
Q Consensus 62 ~~~~--~~E~~~~~~W~~~~~f~~~~~----~~~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G 135 (961)
++|. ++|+++|++|+++++|+.+.. ..+++|++++|.||+||.||+||+++..-.|+..-|+||+|++|||++|
T Consensus 10 r~d~L~eiEk~~q~~W~~e~~fevda~~el~~~~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~Gk~vLfPfg 89 (1080)
T KOG0437|consen 10 RRDSLLEIEKKYQKKWDTEKVFEVDAPNELQKSKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQGKNVLFPFG 89 (1080)
T ss_pred HHHHHHHHHHHHHHhhhhhhheeccCchhcccccCceeEeccccccCceeeccceeehhhhHHHHHHHHhcCceEEeecc
Confidence 3554 799999999999999997653 3478999999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHH---cCCCcc------------------------------------------------ccCHH
Q 002136 136 TDHAGIATQLVVEKMLAA---EGIKRV------------------------------------------------ELSRD 164 (961)
Q Consensus 136 ~D~~Gl~~q~~vek~l~~---~g~~~~------------------------------------------------~~~~~ 164 (961)
++|.|+||-.-+.|..++ .|.++. .++++
T Consensus 90 FHCTGMPI~A~AdKLkrEie~fG~ppdf~~e~eeEv~eev~~~~~~~~~k~kgKKsk~aaK~g~~kYQw~IM~slGl~de 169 (1080)
T KOG0437|consen 90 FHCTGMPIKASADKLKREIELFGCPPDFPEEEEEEVEEEVKTEDAIEDVKFKGKKSKAAAKTGGQKYQWEIMESLGLPDE 169 (1080)
T ss_pred cccCCCccHHhHHHHHHHHHHhCCCCCCchhhhhhhhhcccccccccccccccchhhHHHhhcccchhHHHHHHcCCCHH
Confidence 999999998655542211 121110 12232
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCC--hhhHHHHHHHHHHHHhcCceEEcCeeeecCCCCCccc
Q 002136 165 E---FTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLD--EQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAV 239 (961)
Q Consensus 165 ~---f~~~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d--~~~~~~v~~~F~~L~~~GlIy~~~~~v~w~p~~~t~l 239 (961)
+ |. .+..|..++...-.+++++||..+||+|.|.|+| |-|..+|+|+|.+|.+.|.|..|++...|||++++++
T Consensus 170 EI~~F~-d~~~WL~yFPpLc~~dlk~~gl~iDWRRSFITTDvNpYyDsFVRWQ~n~L~~~gkI~fgkRyTIyspkDgQpC 248 (1080)
T KOG0437|consen 170 EIKKFA-DPKHWLYYFPPLCERDLKRFGLGIDWRRSFITTDVNPYYDSFVRWQFNKLKEAGKIKFGKRYTIYSPKDGQPC 248 (1080)
T ss_pred Hhhccc-ChhHHHHhCChHHHHHHHHhCCCcceeeeeeecccchhHHHHHHHHHHHHHhcCCcccCcceeeecCCCCCcc
Confidence 2 33 2568888888888999999999999999999987 6789999999999999999999999999999999999
Q ss_pred cccccccccCCCeE--EEEEEEec-----------CCCeeEEEEecCCCccCCCcEEEECCCCch---------------
Q 002136 240 SDLEVEYSEEPGTL--YYIKYRVA-----------GRSDFLTIATTRPETLFGDVALAVNPQDEH--------------- 291 (961)
Q Consensus 240 sd~Ev~~~e~~~~~--~~~~~~~~-----------~~~~~l~v~TtrPeTl~g~~av~v~P~~~~--------------- 291 (961)
.||+..-.|..|+- +-+|.++. +.+.|++.||.|||||+|.++++|+|+-++
T Consensus 249 mDHDR~sGEgV~PqeytliKle~le~~p~~l~~~~~~~v~lvAaTLRpetmyGQTnc~V~p~~~y~~fe~~~~~e~fi~t 328 (1080)
T KOG0437|consen 249 MDHDRASGEGVGPQEYTLIKLEVLEPFPKALSSLKDLRVYLVAATLRPETMYGQTNCYVGPDIKYGGFEACNETEVFIAT 328 (1080)
T ss_pred cccccccCCCCCcceEEEEEEEecccchhhccccccceeeeeehhcCCccccCccceEEcCCccEEeEEecCCceEEEee
Confidence 99999888877653 33454432 223789999999999999999999998531
Q ss_pred --------h------------------hhhccCeeeccCCCCCeeeeeecCccccCCCcceeEeCCCCChhHHHHHHHh-
Q 002136 292 --------Y------------------SQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKL- 344 (961)
Q Consensus 292 --------y------------------~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~v~~~Pah~~~D~~~~~~~- 344 (961)
| .+++|..+..|++....|.++++..|..+.|||+|.++|+.+|+||...+..
T Consensus 329 ~raa~NmsyQ~~tk~~g~~~~~~~i~G~~~iGa~l~aPlsv~~~vy~LPMlTi~~~KGTGvVtsVpsdsPDDf~al~dL~ 408 (1080)
T KOG0437|consen 329 ERAARNMSYQKLTKERGVVSCLVTITGYDLIGAPLSAPLSVYERVYALPMLTILATKGTGVVTSVPSDSPDDFAALQDLK 408 (1080)
T ss_pred hHHHhhcchhhccccCCcccceeeecchhhcCCcccCcchhhheeeeccceeeeccCCceeEEeCCCCCchhhhHHHhhh
Confidence 1 3588999999998788899999999999999999999999999999987432
Q ss_pred ------C----------CCceeecC------------------------------------CCCcccccccccCCCchHH
Q 002136 345 ------G----------LPILNVMN------------------------------------KDGTLNEVAGLFRGLDRFE 372 (961)
Q Consensus 345 ------~----------l~~~~~~~------------------------------------~~G~~~~~~g~~~G~~~~~ 372 (961)
| +|||.+.. .+|.| -.|.|.|.++.+
T Consensus 409 kK~~lYg~~~ew~~~E~vPii~~~~fGdl~ae~vc~~lKiqs~~dk~klaeaK~~~y~e~fy~g~m--lig~y~G~KVe~ 486 (1080)
T KOG0437|consen 409 KKPELYGLKPEWVLFEIVPIIRIPGFGDLAAEVVCDELKIQSPNDKKKLAEAKKLAYLEGFYEGTM--LIGKYKGEKVED 486 (1080)
T ss_pred hcccccCCChhhccccccceeeccccchhhHHHHHHHHhccCchhHHHHHHhhHHHHHHhhhcceE--EEeccccccHHh
Confidence 3 24444321 02333 358899999999
Q ss_pred HHHHHHHHHHHcCCcccc-ccccccCCcccCCCCceeeeeccceeeeccH--HHHHHHHHHHcCCceeechhHHHHHHHH
Q 002136 373 ARKKLWSDLEETGLAVKK-EPHTLRVPRSQRGGEVIEPLVSKQWFVTMEP--LAEKALHAVEKGELTIMPERFEKIYNHW 449 (961)
Q Consensus 373 ar~~i~~~L~~~g~~~~~-~~~~~~~p~~~r~~~~v~~~~~~qwF~~~~~--~~~~~~~~~~~~~~~~~P~~~~~~~~~w 449 (961)
++.+|..+|.+.|.+++. ||.. ++-+|||+.++..|++||||++.+ +++.+.+++++ ++.+-+..++.|..-
T Consensus 487 ~K~~i~~~li~~g~a~~y~EPEk---qVmSRSGdeCiVAL~DQWYldYgE~eWKk~a~~cLe~--l~~f~dEtR~~fE~t 561 (1080)
T KOG0437|consen 487 AKPKIKTDLIETGDALKYNEPEK---QVMSRSGDECIVALCDQWYLDYGEAEWKKQAKECLEN--LNTFSDETRNGFEDT 561 (1080)
T ss_pred hhhHHHHHHHhcccceeecCcch---hhhccCCCceEEEeccchhhhcCcHHHHHHHHHHHhh--hhccCHHHHHHHHHH
Confidence 999999999999999874 5543 345799999999999999999975 88888888874 555666778889999
Q ss_pred HhcCCCceeeeccCCCcccce---EEEcCCccc--EEEecChHHHHHHHHhhcCCC-----cccccC-CCceeeeecCCC
Q 002136 450 LSNIKDWCISRQLWWGHRIPV---WYIVGKEEE--YIVARNADEALEKAHQKYGKN-----VEIYQD-PDVLDTWFSSAL 518 (961)
Q Consensus 450 l~~l~DW~ISRq~~WG~pIP~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~dvldtWf~S~l 518 (961)
|+||+.|.|||..+.|++||| |.+++++|+ |+...++.+++.. +-+|.. +...|- ++|+|.-|--..
T Consensus 562 LdWL~~wacsRsyGLGTrlPWD~qyLvESLSDSTIYmAyYTvaHll~~--d~~g~~~~plgi~~~QMtdeVwdYvF~~~~ 639 (1080)
T KOG0437|consen 562 LDWLGQWACSRSYGLGTRLPWDEQYLVESLSDSTIYMAYYTVAHLLHR--DLYGKVEGPLGIKPDQMTDEVWDYVFLNEP 639 (1080)
T ss_pred HHHHHhhhhhccccCCCCCCCcHHHHHHhcchhHHHHHHHHHHHHHHH--hhccCCcccCCCChhhcCHHHHHHhhccCC
Confidence 999999999999999999997 555554443 5555566666655 233322 223332 345555444332
Q ss_pred ccccccCCCCCC----hhHHhhcCCcceEeeeccccccHHHHHHHHHhHh--cCCCCceEEEEeceEEcCCCccccccCC
Q 002136 519 WPFSTLGWPDVS----ADDFKKFYPTTMLETGHDILFFWVARMVMMGIEF--TGSVPFSHVYLHGLIRDSQGRKMSKTLG 592 (961)
Q Consensus 519 ~~~~~~~~p~~~----~~~~~~~~P~d~~~~G~Dil~fw~~~~i~~~~~l--~~~~Pfk~v~~hg~v~d~~G~KMSKS~G 592 (961)
.+ .....|.+. +.+|++|||.|++++|+|++..|+..++....++ ..++| +.|..||+++ .+++|||||.|
T Consensus 640 ~~-k~t~i~~e~L~~lr~eF~Y~YPiDlrvsGKDLi~NHLtfflynHvAl~~~k~WP-kgiraNGHLm-LNsEKMSKSTG 716 (1080)
T KOG0437|consen 640 YP-KNTAIPEEALSNLRREFEYFYPIDLRVSGKDLIPNHLTFFLYNHVALFPEKKWP-KGIRANGHLM-LNSEKMSKSTG 716 (1080)
T ss_pred CC-cCCCccHHHHHHHHHhhhcccceeeeeccccccccceeEeeeehhhhcccccCc-cceeeCceEE-ecchhhccccC
Confidence 11 122222221 6789999999999999999977666665555554 35688 9999999998 99999999999
Q ss_pred CccCchhhhhhcChhHHHHHHHhCCC-CCccccCHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhHHHHHhhccchhh
Q 002136 593 NVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEE 671 (961)
Q Consensus 593 NvI~p~dii~~yGaDalR~~L~~~~~-~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (961)
|+.+..+.|++||||+.|+.|+.++. -+|.||.+....+ .+-+|++...++...+.+.. .| +.++
T Consensus 717 NfmTL~qaieKFgad~tRlalAdaGD~veDANF~ea~AnA---aILRLyt~~ew~eEm~~~~s------~L-rtGp---- 782 (1080)
T KOG0437|consen 717 NFMTLEQAIEKFGADGTRLALADAGDGVEDANFVEANANA---AILRLYTYVEWIEEMCENRS------SL-RTGP---- 782 (1080)
T ss_pred CeeeHHHHHHHhCccceeeeeecccCCcccchhHHhcccH---HHHHHHHHHHHHHHHHhhHH------hh-ccCc----
Confidence 99999999999999999999999888 8999998766443 45677777777765543221 11 1111
Q ss_pred hhcCCCchhHHHHHHHHHHHHHHHHhhhcCChHHHHHH-HHHHHHHhhhHHHHHHhhhhhccCCChHHHHHHHHHHHHHH
Q 002136 672 CLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRE-TYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIF 750 (961)
Q Consensus 672 ~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~-i~~f~~~~~~n~Yle~~K~~l~~~~~~~~~~~~~~~l~~vl 750 (961)
.-...|+.+.+.+|.++...+++|+...|.+|++. .|+|- ...++|-++.- ..+...++...+
T Consensus 783 ---~~~FaDrvf~nemN~~i~~t~~aye~~~fk~aLK~Gfyd~q--aArD~Yrel~g-----------~~mh~dLv~r~i 846 (1080)
T KOG0437|consen 783 ---ASTFADRVFENEMNALIAKTERAYEDTLFKDALKYGFYDLQ--AARDMYRELCG-----------EGMHRDLVFRFI 846 (1080)
T ss_pred ---hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHH--HHHHHHHHHhc-----------ccccHHHHHHHH
Confidence 11367999999999999999999999999999997 67774 66788976543 124567888899
Q ss_pred HHHHHHhCCCchhhHHHHHHHhcCCCCceeecCCCCCCCCCChHHHHHHHHHHHHHHHHHh
Q 002136 751 ENILKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQTSLPRHMSAIKRFENLQSLTRAIRN 811 (961)
Q Consensus 751 ~~~l~LL~Pf~P~itEeiw~~L~~~~~si~~~~wP~~~~~~d~~~~~~~~~~~~~v~~ir~ 811 (961)
++...||+||+||+||.||+.+.....|+ ...||.++.. ++.+...-..+++.++.+|.
T Consensus 847 etqtlLLaPi~Ph~aeyiw~~~~~~~~~v-~~~wP~~s~~-~e~~~~~~~yl~~~l~r~~~ 905 (1080)
T KOG0437|consen 847 ETQTLLLAPICPHLAEYIWRTVLKKNFSV-NVGWPFVSPP-DEKLGSSALYLKRTLKRLRA 905 (1080)
T ss_pred HHHHHHHhccchHHHHHHHHHhccCCcee-ecCCCCCCCH-HHHhhhhHHHHHHHHHHHHH
Confidence 99999999999999999999998765444 5599998743 23232223344454444443
No 35
>PLN02610 probable methionyl-tRNA synthetase
Probab=100.00 E-value=6.1e-84 Score=783.36 Aligned_cols=494 Identities=19% Similarity=0.271 Sum_probs=410.6
Q ss_pred CCCCCEEEeCCCCCcCCCCCCchhhH-hHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHH
Q 002136 87 RGSDPFVISMPPPNVTGSLHMGHAMF-VTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDE 165 (961)
Q Consensus 87 ~~~~~f~i~~ppPy~nG~LHiGHa~~-~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~ 165 (961)
.+.++|+||+|||||||.|||||+++ ++.+|+++||+||+|++|+|++|||+||+||+.++ .+.|++|++
T Consensus 14 ~~~~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A----~~~g~~p~e----- 84 (801)
T PLN02610 14 PGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKA----LEENCTPKE----- 84 (801)
T ss_pred CCCCCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHH----HHcCCCHHH-----
Confidence 45678999999999999999999997 67799999999999999999999999999977655 456887654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCceEEcCeeeecCCCCCccccccccc
Q 002136 166 FTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVE 245 (961)
Q Consensus 166 f~~~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~w~p~~~t~lsd~Ev~ 245 (961)
|++++++.++++|++|||++| +.+.|+++.|.++||++|.+|+++|+||++.+.++|||.|+|+|+|..|+
T Consensus 85 -------~~d~~~~~~~~~~~~l~i~~D--~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~~v~ 155 (801)
T PLN02610 85 -------ICDKYHAIHKEVYDWFDISFD--KFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLADRLVE 155 (801)
T ss_pred -------HHHHHHHHHHHHHHHcCCccc--cCccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCCcchHHhc
Confidence 457889999999999999998 22339999999999999999999999999999999999999999996552
Q ss_pred cccCCCeEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCchhhhhccCeeeccCCCCCeeeeeecCccccCCCcc
Q 002136 246 YSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTG 325 (961)
Q Consensus 246 ~~e~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG 325 (961)
|
T Consensus 156 -----------------------------------------------------------------------------G-- 156 (801)
T PLN02610 156 -----------------------------------------------------------------------------G-- 156 (801)
T ss_pred -----------------------------------------------------------------------------C--
Confidence 2
Q ss_pred eeEeCCC--CChhHHHHHHHhCCCceeecCCCCcccccccccCCCchHHHHHHHHHHHHHcCCccccccccccCCcccCC
Q 002136 326 VLKISPG--HDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRG 403 (961)
Q Consensus 326 ~v~~~Pa--h~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~ 403 (961)
.||. |+.+ +.+|..||.||.+ .++.++..|+|.+|
T Consensus 157 ---~CP~~~C~~~----------------~a~Gd~Ce~Cg~~------------------------~~p~eLi~p~c~~~ 193 (801)
T PLN02610 157 ---TCPTEGCNYD----------------SARGDQCEKCGKL------------------------LNPTELIDPKCKVC 193 (801)
T ss_pred ---cCCccccCcc----------------ccccchhhhcccc------------------------CChhhhcCCcccCC
Confidence 2555 5544 3679999999975 67888999999999
Q ss_pred CCceeeeeccceeeeccHHHHHHHHHHHcCCceeechhHH---HHHHHHHh-cCCCceeeeccCCCcccceEEEcCCccc
Q 002136 404 GEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFE---KIYNHWLS-NIKDWCISRQLWWGHRIPVWYIVGKEEE 479 (961)
Q Consensus 404 ~~~v~~~~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~~---~~~~~wl~-~l~DW~ISRq~~WG~pIP~~~~~~~~~~ 479 (961)
|.+++.+.++||||+++++++.++++++++. +.|.... +...+||+ +|+||||||+..||+|+|. + .
T Consensus 194 g~~~~~~~~~~~ff~Ls~~~~~L~~~~~~~~--~~~~~~~n~~~~~~~~l~~gL~d~~IsR~~~WGipvP~------~-~ 264 (801)
T PLN02610 194 KNTPRIRDTDHLFLELPLLKDKLVEYINETS--VAGGWSQNAIQTTNAWLRDGLKPRCITRDLKWGVPVPL------E-K 264 (801)
T ss_pred CCcceEEEcceEEEEhHHHHHHHHHHHHhCC--CCCCcCHHHHHHHHHHHhCCCCCcceeeecCCcccCCC------C-C
Confidence 9999999999999999999999999998654 3454333 45568995 7999999999999999993 1 0
Q ss_pred EEEecChHHHHHHHHhhcCCCcccccCCCceeeeecCCCcccccc-CCCCCChhHHhhcCCc--c---eEeeecccccc-
Q 002136 480 YIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTL-GWPDVSADDFKKFYPT--T---MLETGHDILFF- 552 (961)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvldtWf~S~l~~~~~~-~~p~~~~~~~~~~~P~--d---~~~~G~Dil~f- 552 (961)
-+..|+|||||+.+.|++.. +|. .+|+.|||. + +|+.|+||++|
T Consensus 265 -------------------------~~~~v~YVWfDAl~~Yis~~~~~~----~~~~~~W~~~~~~~~~hfiGKDi~~fH 315 (801)
T PLN02610 265 -------------------------YKDKVFYVWFDAPIGYVSITACYT----PEWEKWWKNPENVELYQFMGKDNVPFH 315 (801)
T ss_pred -------------------------CCCcEEEEehhhHHHHHHHHhhhh----hHHHHhcCCcccceEEEEEeeecchhH
Confidence 02479999999999998875 774 358889976 6 79999999987
Q ss_pred ---HHHHHHHHHhHhcCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhh-cChhHHHHHHHhCCC-CCccccCHH
Q 002136 553 ---WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE-FGADALRFTISLGTA-GQDLSLSIE 627 (961)
Q Consensus 553 ---w~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~-yGaDalR~~L~~~~~-~~D~~f~~~ 627 (961)
|++.+++.+.. -.+| ++|++|||++ .+|+|||||+||+|+|.++++. ||+|++||||++..+ ++|.+|+++
T Consensus 316 ~i~wPa~L~a~g~~--~~~p-~~i~~~g~l~-~eG~KMSKS~GNvV~p~~~i~~~yg~D~lRyyLl~~~p~~~D~dFs~~ 391 (801)
T PLN02610 316 TVMFPSTLLGTGEN--WTMM-KTISVTEYLN-YEGGKFSKSKGVGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWA 391 (801)
T ss_pred HHHHHHHHHhCCCC--cCCC-CEEEeccCEe-cCCceecCcCCcccCHHHHHhccCCchHhHHHhhhcCCCCCCCcCCHH
Confidence 66654433221 1245 8999999997 8999999999999999999996 999999999999988 999999999
Q ss_pred HHHH--HHHHHHHHHHHHHHHHhhCCC-----CCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhhhc
Q 002136 628 RLTA--NKAFTNKLWNAGKFILQNLPS-----QNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDK 700 (961)
Q Consensus 628 ~~~~--~~~~~nkl~N~~rf~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~ 700 (961)
.+.. +..++|+++|++.+++..+.. +... ... .........|+|++++++.+++++.++|++
T Consensus 392 ~f~~~~NsdL~n~lGNlv~R~~~~i~~~~~k~~~g~----------vp~-~~~~~~~~~d~~Ll~~~~~~i~~v~~~me~ 460 (801)
T PLN02610 392 DLQAKLNSELLNNLGNFINRVLSFIAKPPGAGYGSV----------IPD-APGAESHPLTKKLAEKVGKLVEQYVEAMEK 460 (801)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCc----------CCC-ccccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 9987 677999999987766554321 1110 000 000112346899999999999999999999
Q ss_pred CChHHHHHHHHHHHHHhhhHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhcCC
Q 002136 701 YFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR 775 (961)
Q Consensus 701 ~~f~~A~~~i~~f~~~~~~n~Yle~~K~~l~~~~~~~~~~~~~~~l~~vl~~~l~LL~Pf~P~itEeiw~~L~~~ 775 (961)
|+|+.|++.+++|. ++||+||+..+||...+++......+..++.++++.+++||+||||++||+||++|+..
T Consensus 461 ~~~~~Al~~I~~l~--~~~NkYIe~~kPW~L~k~d~~~l~~vl~~~le~lr~la~LL~PfmP~~aeeI~~~Lg~~ 533 (801)
T PLN02610 461 VKLKQGLKTAMSIS--SEGNAYLQESQFWKLYKEDKPSCAIVVKTSVGLVYLLACLLEPFMPSFSKEVLKQLNLP 533 (801)
T ss_pred cCHHHHHHHHHHHH--HHHHHHHHhcCchhhhCCCHHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhCCC
Confidence 99999999999984 89999999999996654444455667778888999999999999999999999999853
No 36
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-81 Score=726.00 Aligned_cols=489 Identities=27% Similarity=0.416 Sum_probs=427.2
Q ss_pred CCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHH
Q 002136 89 SDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTK 168 (961)
Q Consensus 89 ~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~ 168 (961)
.++|+||+|+|||||.|||||+++++.+||++||+||+|++|+|++|+|+||+|||.++ .++|++|+++
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A----~~~g~tP~el------- 72 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKA----EKEGITPQEL------- 72 (558)
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHH----HHcCCCHHHH-------
Confidence 47899999999999999999999999999999999999999999999999999976654 5679998865
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCccC-CCCCccCCChhhHHHHHHHHHHHHhcCceEEcCeeeecCCCCCccccccccccc
Q 002136 169 RVWEWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYS 247 (961)
Q Consensus 169 ~~~~~~~~~~~~i~~~l~~lG~s~D-w~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~w~p~~~t~lsd~Ev~~~ 247 (961)
+++++..+++.++.|+|++| |.| |+++.|.+.||++|.+|+++|+||.+...+.|||.|++.+.|.+|+
T Consensus 73 -----~d~~~~~~~~~~~~l~IsfD~F~r---Tt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~-- 142 (558)
T COG0143 73 -----VDKNHEEFKELFKALNISFDNFIR---TTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVE-- 142 (558)
T ss_pred -----HHHHHHHHHHHHHHhCCccccccc---CCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccccccchhee--
Confidence 47889999999999999999 777 9999999999999999999999999999999999999999987663
Q ss_pred cCCCeEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCchhhhhccCeeeccCCCCCeeeeeecCccccCCCccee
Q 002136 248 EEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVL 327 (961)
Q Consensus 248 e~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~v 327 (961)
T Consensus 143 -------------------------------------------------------------------------------- 142 (558)
T COG0143 143 -------------------------------------------------------------------------------- 142 (558)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeCCCCChhHHHHHHHhCCCceeecCCCCcccccccccCCCchHHHHHHHHHHHHHcCCccccccccccCCcccCCCCce
Q 002136 328 KISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVI 407 (961)
Q Consensus 328 ~~~Pah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v 407 (961)
..||.++.+ +..|..||+||.. ..|.....|+|+.||..+
T Consensus 143 g~cp~cg~~----------------~arGD~Ce~Cg~~------------------------~~P~~l~~p~~~i~g~~p 182 (558)
T COG0143 143 GTCPKCGGE----------------DARGDQCENCGRT------------------------LDPTELINPVCVISGATP 182 (558)
T ss_pred ccCCCcCcc----------------ccCcchhhhccCc------------------------CCchhcCCCeeEeeCCCc
Confidence 125655544 2579999999963 567777899999999999
Q ss_pred eeeeccceeeeccHHHHHHHHHHHcCCceeechhHHHHHHHHHh-cCCCceeee-ccCCCcccceEEEcCCcccEEEecC
Q 002136 408 EPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS-NIKDWCISR-QLWWGHRIPVWYIVGKEEEYIVARN 485 (961)
Q Consensus 408 ~~~~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~-~l~DW~ISR-q~~WG~pIP~~~~~~~~~~~~~~~~ 485 (961)
|.+.+++||++++++++.++++++++.-.+.|++.++.+.+||+ +|+|||||| ...||+||| +.
T Consensus 183 ~~r~~~hyFf~L~~~~~~L~~~~~~~~~~~~p~~~~ne~~~~i~~GL~d~~IsR~~~~WGipvP-----~~--------- 248 (558)
T COG0143 183 EVREEEHYFFRLSKFQDKLLEWYESNPDFIWPANRRNEVLNFLKEGLKDLSITRTDLDWGIPVP-----GD--------- 248 (558)
T ss_pred ccccceeEEEEHHHhHHHHHHHHHhCccccCChHHHHHHHHHHHccCcccceecCCCCCCccCC-----CC---------
Confidence 99999999999999999999999988777899999999999995 599999999 899999999 10
Q ss_pred hHHHHHHHHhhcCCCcccccCCCceeeeecCCCccccccCCCC--CChhHHhhcCCcc----eEeeecccccc----HHH
Q 002136 486 ADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPD--VSADDFKKFYPTT----MLETGHDILFF----WVA 555 (961)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~dvldtWf~S~l~~~~~~~~p~--~~~~~~~~~~P~d----~~~~G~Dil~f----w~~ 555 (961)
+..|++||||+.+.|++.++... ....+|++|||.+ +|++|+||++| |++
T Consensus 249 --------------------p~kv~YVWfDAligYisa~~~~~~~~~~~~~~~~W~~~~~e~vhfIGKDii~FHav~wPa 308 (558)
T COG0143 249 --------------------PGKVIYVWFDALIGYISALGELAEIGDDEDFKKFWPADDTELVHFIGKDIIRFHAVYWPA 308 (558)
T ss_pred --------------------CCCEEEEeeccHHHHHHHhcchhccCChHHHHhhCCCCCceEEEEeccccCcchhhHHHH
Confidence 24699999999999999888764 3347899999998 99999999986 887
Q ss_pred HHHHHHhHhcCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHhCCC-CCccccCHHHHHH--H
Q 002136 556 RMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTA--N 632 (961)
Q Consensus 556 ~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~~~-~~D~~f~~~~~~~--~ 632 (961)
+++..+. .+| +.|+.||+++ .+|+|||||+||||+|.+++++||+|++||||+...+ ++|.+|+++.+.+ |
T Consensus 309 mL~~~~~----~lP-~~i~ahg~l~-~~G~KmSKSrG~~V~~~~~~~~~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN 382 (558)
T COG0143 309 MLMAAGL----PLP-TRIFAHGFLT-LEGQKMSKSRGNVVDPDELLEQYGVDALRYYLARELPEGSDGDFSWEDFVERVN 382 (558)
T ss_pred HHHhCCC----CCC-CEEEeeeeEE-ECCccccccCCcEEeHHHHHHHcCchHhHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 6555443 356 8999999998 8999999999999999999999999999999999999 9999999999988 7
Q ss_pred HHHHHHHHHHHHHHHhhC----CCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhhhcCChHHHHH
Q 002136 633 KAFTNKLWNAGKFILQNL----PSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGR 708 (961)
Q Consensus 633 ~~~~nkl~N~~rf~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~ 708 (961)
..+.|++.|.+.++++.+ .+..+ .... ..+ ..|+.++..+..+.+.+.++|++++|++|+.
T Consensus 383 ~dL~n~lgNl~~R~~~fi~k~~~g~vp-------------~~~~-~~~-~~d~~~~~~~~~~~~~~~~~~e~~~~~~Al~ 447 (558)
T COG0143 383 ADLANKLGNLANRTLGFINKYFDGVVP-------------AAGA-PDL-EEDEELLALAREALEAVAEAMEKYEFRKALE 447 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcCC-------------cccc-ccc-hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 889999999887776633 22221 0000 122 5789999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHhhhhhccCCC-hHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhcCC
Q 002136 709 ETYDFFWSDFADWYIEASKARLYRSEY-DSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR 775 (961)
Q Consensus 709 ~i~~f~~~~~~n~Yle~~K~~l~~~~~-~~~~~~~~~~l~~vl~~~l~LL~Pf~P~itEeiw~~L~~~ 775 (961)
.+++++ ..+|.|++..+||...+.+ .+...++..++.++++.+..||+||||.+|++||++|+.+
T Consensus 448 ~i~~l~--~~~N~Yi~~~~PW~l~k~~~~~~~~~vl~~~~~~~r~la~ll~P~mP~~a~ki~~~L~~~ 513 (558)
T COG0143 448 EIMALA--SRANKYIDEQAPWKLAKEDKRERLATVLYLALELVRVLAILLYPFMPETAEKIWDQLGLE 513 (558)
T ss_pred HHHHHH--HHHHHHhhcCCCchhhccCcHHHHHHHHHHHHHHHHHHHHHhcCcCcchHHHHHHHhCCc
Confidence 999997 7899999999999766533 3455667788888899999999999999999999999864
No 37
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=8.2e-81 Score=741.50 Aligned_cols=465 Identities=26% Similarity=0.366 Sum_probs=403.1
Q ss_pred CCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHH
Q 002136 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKR 169 (961)
Q Consensus 90 ~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~ 169 (961)
++|+|++|||||||.|||||+++++++|+++||+||+|++|.|++|+|+||.+++. .+++.|+++.
T Consensus 1 ~~~~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~----~a~~~g~~~~---------- 66 (511)
T PRK11893 1 KKFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQR----KAEEAGISPQ---------- 66 (511)
T ss_pred CCEEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHH----HHHHcCCCHH----------
Confidence 46999999999999999999999999999999999999999999999999998653 4566788864
Q ss_pred HHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCceEEcCeeeecCCCCCccccccccccccC
Q 002136 170 VWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEE 249 (961)
Q Consensus 170 ~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~w~p~~~t~lsd~Ev~~~e~ 249 (961)
++++++.+.|+++|++||+.+|+ .+.|+++.|.+.|+++|.+|+++|+||++.+.|+|||.|+|+|++.|+.
T Consensus 67 --~~~~~~~~~~~~~l~~l~I~~D~--~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~---- 138 (511)
T PRK11893 67 --ELADRNSAAFKRLWEALNISYDD--FIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELI---- 138 (511)
T ss_pred --HHHHHHHHHHHHHHHHhCCCcCC--ceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhc----
Confidence 34578999999999999999882 2348999999999999999999999999999999999999999986541
Q ss_pred CCeEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCchhhhhccCeeeccCCCCCeeeeeecCccccCCCcceeEe
Q 002136 250 PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKI 329 (961)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~v~~ 329 (961)
T Consensus 139 -------------------------------------------------------------------------------- 138 (511)
T PRK11893 139 -------------------------------------------------------------------------------- 138 (511)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCChhHHHHHHHhCCCceeecCCCCcccccccccCCCchHHHHHHHHHHHHHcCCccccccccccCCcccCCCCceee
Q 002136 330 SPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEP 409 (961)
Q Consensus 330 ~Pah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~ 409 (961)
++ .|+|+|||+++++
T Consensus 139 -------------------------------------------------------------~~----~p~~~~~~~~~~~ 153 (511)
T PRK11893 139 -------------------------------------------------------------ED----GYRCPPTGAPVEW 153 (511)
T ss_pred -------------------------------------------------------------CC----CCCCCCCCCcceE
Confidence 00 1789999999999
Q ss_pred eeccceeeeccHHHHHHHHHHHcCCceeechhHHHHHHHHHh-cCCCceeee-ccCCCcccceEEEcCCcccEEEecChH
Q 002136 410 LVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS-NIKDWCISR-QLWWGHRIPVWYIVGKEEEYIVARNAD 487 (961)
Q Consensus 410 ~~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~-~l~DW~ISR-q~~WG~pIP~~~~~~~~~~~~~~~~~~ 487 (961)
+.++|||++++.+++++.++++++...+.|+..++.+.+|++ +++|||||| |++||+|||.+
T Consensus 154 ~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~D~~isR~~~~WGipiP~~---------------- 217 (511)
T PRK11893 154 VEEESYFFRLSKYQDKLLELYEANPDFIQPASRRNEVISFVKSGLKDLSISRTNFDWGIPVPGD---------------- 217 (511)
T ss_pred EecCeEEEEcHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHCCCCCcccCCCCCCCCccCCCC----------------
Confidence 999999999999999999999865444679999999999997 599999999 99999999941
Q ss_pred HHHHHHHhhcCCCcccccCCCceeeeecCCCccccccCCCCCCh---hHHhhcCCcceEeeeccccccHHHHHHHHHhHh
Q 002136 488 EALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSA---DDFKKFYPTTMLETGHDILFFWVARMVMMGIEF 564 (961)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~dvldtWf~S~l~~~~~~~~p~~~~---~~~~~~~P~d~~~~G~Dil~fw~~~~i~~~~~l 564 (961)
+.+++||||||+++|++..+||.+.+ ++|++|||.|++++|+||++||....++++.++
T Consensus 218 ------------------~~~~~~vWfda~~~y~s~~~~p~~~~~~~~~~~~~~~~D~~~~G~D~~~~h~~~~~a~~~a~ 279 (511)
T PRK11893 218 ------------------PKHVIYVWFDALTNYLTALGYPDDEELLAELFNKYWPADVHLIGKDILRFHAVYWPAFLMAA 279 (511)
T ss_pred ------------------CCceEEEEecCcHHHHhHhccccccccchhHHHhcCCCcceEecccccccchhHHHHHHHhC
Confidence 24699999999999999999987542 469999999999999999999888877777666
Q ss_pred cCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHhCCC-CCccccCHHHHHH--HHHHHHHHHH
Q 002136 565 TGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTA--NKAFTNKLWN 641 (961)
Q Consensus 565 ~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~~~-~~D~~f~~~~~~~--~~~~~nkl~N 641 (961)
..+.| +.+++|||++ .+|+|||||+||+|+|.|++++||+|++||||++.++ ++|++|+++.+.. +.+++++++|
T Consensus 280 ~~~~p-~~~~~~g~v~-~~G~KMSKS~GN~i~~~dll~~~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~~l~~~l~n 357 (511)
T PRK11893 280 GLPLP-KRVFAHGFLT-LDGEKMSKSLGNVIDPFDLVDEYGVDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGN 357 (511)
T ss_pred CCCCC-CEEEeeccEE-ECCeeecccCCcEEcHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 56788 9999999999 5999999999999999999999999999999999877 9999999999966 5678899999
Q ss_pred HHHHHHhhC----CCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHh
Q 002136 642 AGKFILQNL----PSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSD 717 (961)
Q Consensus 642 ~~rf~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~i~~f~~~~ 717 (961)
+..++...+ .+..+ ....+...|+|++++++.+++.+.++|++|+|+.|++.+++|+ +
T Consensus 358 ~~~r~~~~~~~~~~~~~~----------------~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~--~ 419 (511)
T PRK11893 358 LAQRTLSMIAKNFDGKVP----------------EPGALTEADEALLEAAAALLERVRAAMDNLAFDKALEAILALV--R 419 (511)
T ss_pred HHHHHHHHHHHhcCCCCC----------------CCcccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--H
Confidence 876544322 11111 0112456799999999999999999999999999999999998 5
Q ss_pred hhHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhcCC
Q 002136 718 FADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR 775 (961)
Q Consensus 718 ~~n~Yle~~K~~l~~~~~~~~~~~~~~~l~~vl~~~l~LL~Pf~P~itEeiw~~L~~~ 775 (961)
.+|+|++..+||...+++......+..+++++++.+++||+|||||+||+||+.|+..
T Consensus 420 ~~n~y~~~~~pw~~~~~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~L~~~ 477 (511)
T PRK11893 420 AANKYIDEQAPWSLAKTDPERLATVLYTLLEVLRGIAVLLQPVMPELAAKILDQLGVE 477 (511)
T ss_pred HHHHHHhhCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHhCCC
Confidence 6899999999986554344566778889999999999999999999999999999853
No 38
>PLN02224 methionine-tRNA ligase
Probab=100.00 E-value=2.4e-80 Score=731.57 Aligned_cols=465 Identities=21% Similarity=0.327 Sum_probs=387.6
Q ss_pred CCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHH
Q 002136 89 SDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTK 168 (961)
Q Consensus 89 ~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~ 168 (961)
+++|+|++|||||||.||||||++++++|+++||+||+|++|+|++|||+||++|+.. +.+.|+++.+
T Consensus 68 ~~~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~----A~~~g~~p~e-------- 135 (616)
T PLN02224 68 ADTFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATS----AAANGRNPPE-------- 135 (616)
T ss_pred CCeEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHH----HHHcCCChHH--------
Confidence 6789999999999999999999999999999999999999999999999999997654 4567887653
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCceEEcCeeeecCCCCCcccccccccccc
Q 002136 169 RVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE 248 (961)
Q Consensus 169 ~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~w~p~~~t~lsd~Ev~~~e 248 (961)
+++++...+++++++||+++| +.+.|++|.|.+.|+++|.+|+++|+||+++++++|||+|++.+.+.|+.
T Consensus 136 ----~~~~~~~~~~~~~~~l~I~~D--~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce~f~~~~~l~--- 206 (616)
T PLN02224 136 ----HCDIISQSYRTLWKDLDIAYD--KFIRTTDPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCEEYKDEKELL--- 206 (616)
T ss_pred ----HHHHHHHHHHHHHHHcCCCCC--cCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCCCCCCHHHHc---
Confidence 346677888999999999776 55569999999999999999999999999999999999998777654431
Q ss_pred CCCeEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCchhhhhccCeeeccCCCCCeeeeeecCccccCCCcceeE
Q 002136 249 EPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLK 328 (961)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~v~ 328 (961)
T Consensus 207 -------------------------------------------------------------------------------- 206 (616)
T PLN02224 207 -------------------------------------------------------------------------------- 206 (616)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCCCCChhHHHHHHHhCCCceeecCCCCcccccccccCCCchHHHHHHHHHHHHHcCCccccccccccCCcccCCCCcee
Q 002136 329 ISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIE 408 (961)
Q Consensus 329 ~~Pah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~ 408 (961)
+ .+.|..||.+++
T Consensus 207 --------------------------------------------------------------~-----~~~~~~~~~~~~ 219 (616)
T PLN02224 207 --------------------------------------------------------------E-----NNCCPVHQMPCV 219 (616)
T ss_pred --------------------------------------------------------------C-----CCCCCCCCCcce
Confidence 0 023667899999
Q ss_pred eeeccceeeeccHHHHHHHHHHHcCCceeechhHHHHHHHHHh-cCCCceeeecc-CCCcccceEEEcCCcccEEEecCh
Q 002136 409 PLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS-NIKDWCISRQL-WWGHRIPVWYIVGKEEEYIVARNA 486 (961)
Q Consensus 409 ~~~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~-~l~DW~ISRq~-~WG~pIP~~~~~~~~~~~~~~~~~ 486 (961)
.+.+++|||+++++++.++++++++.-.+.|+..++.+.+||+ +|+||||||++ .||+|+|. +
T Consensus 220 ~~~e~~~ff~Ls~~~~~L~~~~~~~~~~~~p~~~~~~~~~~l~~gL~d~~ISR~~~~WGIpvP~-------~-------- 284 (616)
T PLN02224 220 ARKEDNYFFALSKYQKPLEDILAQNPRFVQPSYRLNEVQSWIKSGLRDFSISRALVDWGIPVPD-------D-------- 284 (616)
T ss_pred EEecceEEEEhHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCCCccccCCCCCCceECCC-------C--------
Confidence 9999999999999999999999865545679999899999996 59999999986 79999992 0
Q ss_pred HHHHHHHHhhcCCCcccccCCCceeeeecCCCccccccCCCCCC---hhHHhhcCCcceEeeecccccc----HHHHHHH
Q 002136 487 DEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVS---ADDFKKFYPTTMLETGHDILFF----WVARMVM 559 (961)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~dvldtWf~S~l~~~~~~~~p~~~---~~~~~~~~P~d~~~~G~Dil~f----w~~~~i~ 559 (961)
+..|++||||+.+.|++..+++... ...|..|||.+++++|+||++| |++.+++
T Consensus 285 -------------------~~~viYVWfDAl~~Yls~~~~~~~~~~~~~~~~~~w~~~v~~iGKDii~fH~i~wpa~l~~ 345 (616)
T PLN02224 285 -------------------DKQTIYVWFDALLGYISALTEDNKQQNLETAVSFGWPASLHLIGKDILRFHAVYWPAMLMS 345 (616)
T ss_pred -------------------CCcEEEEehhhHHHHHHHhcccccccccchhhccCCCcceEEEeecccccHHHHHHHHHHH
Confidence 2479999999999999988876432 1125668999999999999997 7765433
Q ss_pred HHhHhcCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHhCCC-CCccccCHHHHHH--HHHHH
Q 002136 560 MGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTA--NKAFT 636 (961)
Q Consensus 560 ~~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~~~-~~D~~f~~~~~~~--~~~~~ 636 (961)
.+ -.+| +++++||++. .+|+|||||+||+|+|.+++++||+|++||||++.++ ++|.+|+++.+.. +.+++
T Consensus 346 ~g----~~~P-~~i~~~g~l~-~eG~KMSKS~GN~i~p~e~l~~ygaD~~R~yLl~~~p~~~d~~fs~~~~~~~~NseLa 419 (616)
T PLN02224 346 AG----LELP-KMVFGHGFLT-KDGMKMGKSLGNTLEPFELVQKFGPDAVRYFFLREVEFGNDGDYSEDRFIKIVNAHLA 419 (616)
T ss_pred CC----CCCC-cEEEecccEe-cCCccccccCCccCCHHHHHHHcCcHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHH
Confidence 22 2456 9999999985 9999999999999999999999999999999999888 9999999998765 67799
Q ss_pred HHHHHHHHHHHhhCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHH
Q 002136 637 NKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWS 716 (961)
Q Consensus 637 nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~i~~f~~~ 716 (961)
+.++|++.+++........ +. ..........|.|++++++.+++++.++|++|+|+.|++.+++|.
T Consensus 420 n~lgNll~R~l~~~~k~~~----------~~--~~~~~~~~~~d~~l~~~l~~li~~v~~~me~~~~~~Al~~i~el~-- 485 (616)
T PLN02224 420 NTIGNLLNRTLGLLKKNCE----------ST--LVEDSTVAAEGVPLKDTVEKLVEKAQTNYENLSLSSACEAVLEIG-- 485 (616)
T ss_pred HHHHHHHHHHHHHHHHhcC----------Cc--CCCccccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--
Confidence 9999998776543321100 00 000011234589999999999999999999999999999999996
Q ss_pred hhhHHHHHHhhhhhccCCC---hHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhcCC
Q 002136 717 DFADWYIEASKARLYRSEY---DSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR 775 (961)
Q Consensus 717 ~~~n~Yle~~K~~l~~~~~---~~~~~~~~~~l~~vl~~~l~LL~Pf~P~itEeiw~~L~~~ 775 (961)
+.+|+|++..+||....++ .+...+...+++++++.+++||+|||||+||+||+.|+..
T Consensus 486 ~~~N~Yi~~~~PW~l~k~~~~~~~~~~~~l~~l~e~lr~~a~LLaPf~P~~Ae~I~~~Lg~~ 547 (616)
T PLN02224 486 NAGNTYMDQRAPWFLFKQGGVSAEEAAKDLVIILEVMRVIAVALSPIAPCLSLRIYSQLGYS 547 (616)
T ss_pred HHHHHHHHhCCchhhhccccccHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHhCCC
Confidence 7899999999999543222 1234556778899999999999999999999999999853
No 39
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=2.4e-77 Score=669.21 Aligned_cols=336 Identities=35% Similarity=0.686 Sum_probs=309.6
Q ss_pred CCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcC-CCccccCHHHHHH
Q 002136 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEG-IKRVELSRDEFTK 168 (961)
Q Consensus 90 ~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g-~~~~~~~~~~f~~ 168 (961)
++|+|++|||||||.||||||++++++|+++||+||+||+|+|++||||||+|||.++++.+...+ ..+.++++++|.+
T Consensus 1 ~~f~i~~~pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~ 80 (338)
T cd00818 1 PEFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNA 80 (338)
T ss_pred CCeEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHH
Confidence 469999999999999999999999999999999999999999999999999999999887653222 2457899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCceEEcCeeeecCCCCCcccccccccccc
Q 002136 169 RVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE 248 (961)
Q Consensus 169 ~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~w~p~~~t~lsd~Ev~~~e 248 (961)
.|++|++++.+.+.++|++||+++||++.+.|++++|.+.++++|.+|+++|+||+++++|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~----------------- 143 (338)
T cd00818 81 KCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGYKVVPW----------------- 143 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccCCeeee-----------------
Confidence 999999999999999999999999999999999999999999999999999999999998865
Q ss_pred CCCeEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCchhhhhccCeeeccCCCCCeeeeeecCccccCCCcceeE
Q 002136 249 EPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLK 328 (961)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~v~ 328 (961)
T Consensus 144 -------------------------------------------------------------------------------- 143 (338)
T cd00818 144 -------------------------------------------------------------------------------- 143 (338)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCCCCChhHHHHHHHhCCCceeecCCCCcccccccccCCCchHHHHHHHHHHHHHcCCccccccccccCCcccCCCCcee
Q 002136 329 ISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIE 408 (961)
Q Consensus 329 ~~Pah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~ 408 (961)
+++
T Consensus 144 -----------------------------------------------------------------------------~v~ 146 (338)
T cd00818 144 -----------------------------------------------------------------------------PLI 146 (338)
T ss_pred -----------------------------------------------------------------------------EEE
Confidence 245
Q ss_pred eeeccceeeeccHHHHHHHHHHHcCCceeechhHHHHHHHHHhcCCCceeeeccCCCcccceEEEcCCcccEEEecChHH
Q 002136 409 PLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADE 488 (961)
Q Consensus 409 ~~~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~ 488 (961)
+++++||||+++++++.+++++++ ++|+|+..++.+.+||++++|||||||++||+|||+|+|++ ++.+++
T Consensus 147 ~~~~~qwf~~l~~~~~~l~~~~~~--~~~~P~~~~~~~~~~l~~l~dw~iSR~~~WGip~P~~~~~~-~~~~~~------ 217 (338)
T cd00818 147 YRATPQWFIRVTKIKDRLLEANDK--VNWIPEWVKNRFGNWLENRRDWCISRQRYWGTPIPVWYCED-CGEVLV------ 217 (338)
T ss_pred EEecCeEEEEcHHHHHHHHHHHhc--CcEECHHHHHHHHHHHhcchhcceeeecccCceeeEEEecC-CCeEEE------
Confidence 667899999999999999999974 77899999999999999999999999999999999999864 333322
Q ss_pred HHHHHHhhcCCCcccccCCCceeeeecCCCccccccCCCCCChhHHhhcCCcceEeeeccccccHHHHHHHHHhHhcCCC
Q 002136 489 ALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSV 568 (961)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~dvldtWf~S~l~~~~~~~~p~~~~~~~~~~~P~d~~~~G~Dil~fw~~~~i~~~~~l~~~~ 568 (961)
.++++|+||||||+++|++..+||.++ .+|++|||+|++++|+||+++|+.++++.+..+.+..
T Consensus 218 ---------------~~~~~v~~vWfda~~~~~~~~~~~~~~-~~~~~~~p~d~~~~GkDii~~wf~~~~~~~~~~~~~~ 281 (338)
T cd00818 218 ---------------RRVPDVLDVWFDSGSMPYAQLHYPFEN-EDFEELFPADFILEGSDQTRGWFYSLLLLSTALFGKA 281 (338)
T ss_pred ---------------ecCCceEEEEEeCCCCHHHHcCCCCcc-hhhhccCCCeEEeecchHHhHHHHHHHHHHHHhcCCC
Confidence 467899999999999999999999776 6899999999999999999999999999998888899
Q ss_pred CceEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHhCCC-CCcccc
Q 002136 569 PFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSL 624 (961)
Q Consensus 569 Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~~~-~~D~~f 624 (961)
||+++++||++++.+|+|||||+||+|+|.|++++||+|++||||++.++ ++|++|
T Consensus 282 p~~~~~~hg~~~~~~g~KmSKS~gn~i~~~~~~~~~~~D~~R~~l~~~~~~~~d~~~ 338 (338)
T cd00818 282 PYKNVIVHGFVLDEDGRKMSKSLGNYVDPQEVVDKYGADALRLWVASSDVYAEDLRF 338 (338)
T ss_pred ccceEEEEeeEECCCCCCCCCCCCCcCCHHHHHHHcCcHHHHHHHHhCCCccCCCCC
Confidence 99999999999988999999999999999999999999999999999988 999876
No 40
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.1e-69 Score=568.73 Aligned_cols=470 Identities=24% Similarity=0.394 Sum_probs=395.2
Q ss_pred CCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHH
Q 002136 89 SDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTK 168 (961)
Q Consensus 89 ~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~ 168 (961)
.++|++++|..|||..+||||+++.+++|+++||+|++|..|.|.+|||+||+.||.++ +.+|..|.+++
T Consensus 38 ~~~~~lTTPifYvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaa----atnG~~P~e~c------ 107 (578)
T KOG0436|consen 38 GETFVLTTPIFYVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAA----ATNGRNPPELC------ 107 (578)
T ss_pred CceeEEecceeecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhH----hhcCCChHHHH------
Confidence 56899999999999999999999999999999999999999999999999999988765 45788876543
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCccC-CCCCccCCChhhHHHHHHHHHHHHhcCceEEcCeeeecCCCCCccccccccccc
Q 002136 169 RVWEWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYS 247 (961)
Q Consensus 169 ~~~~~~~~~~~~i~~~l~~lG~s~D-w~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~w~p~~~t~lsd~Ev~~~ 247 (961)
+...+.+++.++..|++++ |-| |+||.|...|++++..+.++|+||++.+...||.+|+|...+.+|.-.
T Consensus 108 ------Dr~s~~f~qL~k~~gi~yt~FIR---TTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~ 178 (578)
T KOG0436|consen 108 ------DRISQSFRQLWKDAGIAYTKFIR---TTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLKN 178 (578)
T ss_pred ------hhhhHHHHHHHHHhCcchhheee---cCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhcC
Confidence 5667788899999999999 666 999999999999999999999999999999999999988887766211
Q ss_pred cCCCeEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCchhhhhccCeeeccCCCCCeeeeeecCccccCCCccee
Q 002136 248 EEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVL 327 (961)
Q Consensus 248 e~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~v 327 (961)
. -
T Consensus 179 p-------------------------------------------------------~----------------------- 180 (578)
T KOG0436|consen 179 P-------------------------------------------------------C----------------------- 180 (578)
T ss_pred C-------------------------------------------------------C-----------------------
Confidence 0 0
Q ss_pred EeCCCCChhHHHHHHHhCCCceeecCCCCcccccccccCCCchHHHHHHHHHHHHHcCCccccccccccCCcccCCCCce
Q 002136 328 KISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVI 407 (961)
Q Consensus 328 ~~~Pah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v 407 (961)
| .| . +++--||.+|
T Consensus 181 ---~-----------------------~g-------k---------------------------------~vsmEsg~~v 194 (578)
T KOG0436|consen 181 ---P-----------------------PG-------K---------------------------------VVSMESGNPV 194 (578)
T ss_pred ---C-----------------------CC-------c---------------------------------eeeeccCCce
Confidence 0 00 0 1122378889
Q ss_pred eeeeccceeeeccHHHHHHHHHHHcCCceeechhHHHHHHHHHh-cCCCceeee--c-cCCCcccceEEEcCCcccEEEe
Q 002136 408 EPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS-NIKDWCISR--Q-LWWGHRIPVWYIVGKEEEYIVA 483 (961)
Q Consensus 408 ~~~~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~-~l~DW~ISR--q-~~WG~pIP~~~~~~~~~~~~~~ 483 (961)
..+-.+.+|++++.+++++.+.++.+.-.+.|+...+....||+ +|+|..||| + +.||+|+| + +
T Consensus 195 v~~kE~NY~FrLSkfqk~l~d~lrkNP~fvqPs~~~~qVl~~lktglpDlSISRpsarl~WGIPvP-----~--d----- 262 (578)
T KOG0436|consen 195 VWRKEDNYFFRLSKFQKPLEDHLRKNPRFVQPSYFHNQVLSWLKTGLPDLSISRPSARLDWGIPVP-----G--D----- 262 (578)
T ss_pred eEecccceeeeHHhhhhHHHHHHhcCCCccCchHHHHHHHHHHHcCCCcccccChhhhcccCCCCC-----C--C-----
Confidence 99999999999999999999999988878899999999999995 899999999 3 79999999 2 1
Q ss_pred cChHHHHHHHHhhcCCCcccccCCCceeeeecCCCccccccCCCCCC---hhHHhhcCCcceEeeecccccc----HHHH
Q 002136 484 RNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVS---ADDFKKFYPTTMLETGHDILFF----WVAR 556 (961)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~dvldtWf~S~l~~~~~~~~p~~~---~~~~~~~~P~d~~~~G~Dil~f----w~~~ 556 (961)
+.++++||||+.+.|++.+|+|.+. +..+.-+||+.+|++|+||++| |+++
T Consensus 263 ----------------------dsQtIYVWfDAL~nYiSvig~~~~~~N~k~~ls~~wPat~HvIGKDIlrFHavYWPaf 320 (578)
T KOG0436|consen 263 ----------------------DSQTIYVWFDALLNYISVIGYPNKQQNLKTALSFGWPATLHVIGKDILRFHAVYWPAF 320 (578)
T ss_pred ----------------------CcceEEEeHHHHhhHHHhhcCCchhccccceeecCCCceeeehhhhhhhhhhhhhHHH
Confidence 4589999999999999999999632 4678889999999999999986 9998
Q ss_pred HHHHHhHhcCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHhCCC-CCccccCHHHHHH--HH
Q 002136 557 MVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTA--NK 633 (961)
Q Consensus 557 ~i~~~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~~~-~~D~~f~~~~~~~--~~ 633 (961)
+|+.|+.+ | +.|++||+++ .+|.|||||+||||||.+++++||+|++||||+.... +.|.+|+++++.. +.
T Consensus 321 LmaAGlpl----P-~~I~vHghwt-~ngmKMsKSLGNvvdP~~l~~kygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~ 394 (578)
T KOG0436|consen 321 LMAAGLPL----P-KMIFVHGHWT-KNGMKMSKSLGNVVDPFELVQKYGVDAVRYFLLREGELGNDGDYSEEKLIKIVNA 394 (578)
T ss_pred HHhcCCCC----c-cEEEEeeeee-ecceecchhhccccCHHHHHHHhCccceeeEeeeccccCCCCCccHHHHHHHHHH
Confidence 88777643 5 9999999998 9999999999999999999999999999999999888 9999999999987 67
Q ss_pred HHHHHHHHHHHHHHhhC---CCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhhhcCChHHHHHHH
Q 002136 634 AFTNKLWNAGKFILQNL---PSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRET 710 (961)
Q Consensus 634 ~~~nkl~N~~rf~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~i 710 (961)
.+.++++|++.++.+.- .+... . +. .+.......+.-+.+.++.+.+.+.+.|++|.+..|++++
T Consensus 395 ~La~~lG~LlnRc~gkkln~sn~e~--~---l~-------~~s~~v~ae~~~lv~~v~kl~ev~a~~~d~f~~~~ale~V 462 (578)
T KOG0436|consen 395 HLANTLGNLLNRCLGKKLNISNCES--T---LV-------VDSPTVAAEGEPLVDTVEKLPEVAATNYDNFSLYSALEAV 462 (578)
T ss_pred HHHHHHHHHHHHHhhcccChhcccc--c---cc-------cCCcchhhccchHHHHHHHhHHHHHhhcccccHHHHHHHH
Confidence 89999999998887631 11000 0 00 0000112235568889999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHHhhhhhccCCC---hHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhcCC
Q 002136 711 YDFFWSDFADWYIEASKARLYRSEY---DSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR 775 (961)
Q Consensus 711 ~~f~~~~~~n~Yle~~K~~l~~~~~---~~~~~~~~~~l~~vl~~~l~LL~Pf~P~itEeiw~~L~~~ 775 (961)
.+.+ +-.|.|++..+||....+. ..........+++|++.+.+||+|+||-++.+++++|+-.
T Consensus 463 ~si~--n~~ntlvq~~aPWkl~~dsq~~~~~la~~~~~~le~lrv~~illqpv~Psls~~llsqlgvs 528 (578)
T KOG0436|consen 463 LSIG--NAGNTLVQQRAPWKLFKDSQVSAEELAKVLHIILEVLRVIGILLQPVAPSLSLRLLSQLGVS 528 (578)
T ss_pred HHHH--HhhhhhhhhcCCceeccccCccHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHcCCC
Confidence 9987 5689999999999654322 2234445566778899999999999999999999999865
No 41
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=100.00 E-value=3.7e-67 Score=583.87 Aligned_cols=311 Identities=39% Similarity=0.743 Sum_probs=287.2
Q ss_pred CEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHH
Q 002136 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRV 170 (961)
Q Consensus 91 ~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~ 170 (961)
+|+|++|||||||.|||||+++++++|+++||+||+|++|++++||||||+|||.++++.+ +.+.....+++|.+.|
T Consensus 1 ~~~i~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~---~~~~~~~~~~~~~~~~ 77 (312)
T cd00668 1 KFYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKG---GRKKKTIWIEEFREDP 77 (312)
T ss_pred CEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhc---CcccccccHHHHHHHH
Confidence 5999999999999999999999999999999999999999999999999999998887654 3344445588999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCceEEcCeeeecCCCCCccccccccccccCC
Q 002136 171 WEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEP 250 (961)
Q Consensus 171 ~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~w~p~~~t~lsd~Ev~~~e~~ 250 (961)
++|++++.+.|+++|++||+++||++.+.|+++.|.+.|+++|.+|+++|+||++.++|
T Consensus 78 ~~~~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v--------------------- 136 (312)
T cd00668 78 KEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPV--------------------- 136 (312)
T ss_pred HHHHHHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeeccee---------------------
Confidence 99999999999999999999999999999999999999999999999999999988654
Q ss_pred CeEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCchhhhhccCeeeccCCCCCeeeeeecCccccCCCcceeEeC
Q 002136 251 GTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKIS 330 (961)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~v~~~ 330 (961)
T Consensus 137 -------------------------------------------------------------------------------- 136 (312)
T cd00668 137 -------------------------------------------------------------------------------- 136 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCChhHHHHHHHhCCCceeecCCCCcccccccccCCCchHHHHHHHHHHHHHcCCccccccccccCCcccCCCCceeee
Q 002136 331 PGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPL 410 (961)
Q Consensus 331 Pah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~ 410 (961)
+
T Consensus 137 -------------------------------------------------------------------------------~ 137 (312)
T cd00668 137 -------------------------------------------------------------------------------R 137 (312)
T ss_pred -------------------------------------------------------------------------------E
Confidence 1
Q ss_pred eccceeeeccHHHHHHHHHHHcCCceeechhHHHHHHHHHhcCCCceeeeccCCCcccceEEEcCCcccEEEecChHHHH
Q 002136 411 VSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEAL 490 (961)
Q Consensus 411 ~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~ 490 (961)
.++|||++++++++++++++++++ +.|+..++.+.+||++..|||||||++||+|+|
T Consensus 138 ~~~~~f~~~~~l~~~~~~~~~~~~--~~p~~~~~~~~~~l~~~~d~~isR~~~WG~~~P--------------------- 194 (312)
T cd00668 138 ITEQWFFDMPKFKEKLLKALRRGK--IVPEHVKNRMEAWLESLLDWAISRQRYWGTPLP--------------------- 194 (312)
T ss_pred eeeeEEEEcHHHHHHHHHHHhcCC--cCChHHHHHHHHHHhCCCCeEEeccCCCCCcCC---------------------
Confidence 246899999999999999998654 899999999999999888999999999999999
Q ss_pred HHHHhhcCCCcccccCCCceeeeecCCCccccccCCCCCChhHHhhcCCcceEeeeccccccHHHHHHHHHhHhcCCCCc
Q 002136 491 EKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPF 570 (961)
Q Consensus 491 ~~~~~~~~~~~~~~~~~dvldtWf~S~l~~~~~~~~p~~~~~~~~~~~P~d~~~~G~Dil~fw~~~~i~~~~~l~~~~Pf 570 (961)
++|+||||||+++|+++++|+.+. ++|+++||.|++++|+||+++|+..+++++.++.+..||
T Consensus 195 ----------------~~~i~~Wfds~~~~~~~~~~~~~~-~~~~~~~~~di~~~G~D~~~~h~~~~~~~~~~~~~~~~~ 257 (312)
T cd00668 195 ----------------EDVFDVWFDSGIGPLGSLGYPEEK-EWFKDSYPADWHLIGKDILRGWANFWITMLVALFGEIPP 257 (312)
T ss_pred ----------------cccccchhhccHHHHHHcCCCccc-hhhhhcCCceEEEEecchhhhHHHHHHHHHHHhcCCCCc
Confidence 168999999999999999998765 679999999999999999999999999999988888788
Q ss_pred eEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHhCCC-CCcccc
Q 002136 571 SHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSL 624 (961)
Q Consensus 571 k~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~~~-~~D~~f 624 (961)
+++++||++++.+|+|||||+||+|+|.|++++||+|++||||++.++ ++|.+|
T Consensus 258 ~~~~~~g~~~~~~g~KmSKS~gn~v~~~d~~~~~~~da~R~~l~~~~~~~~d~~~ 312 (312)
T cd00668 258 KNLLVHGFVLDEGGQKMSKSKGNVIDPSDVVEKYGADALRYYLTSLAPYGDDIRL 312 (312)
T ss_pred ceeEECcEEEcCCCccccccCCCcCCHHHHHHHcCcHHHHHHHHhcCCccCCCCC
Confidence 999999999987779999999999999999999999999999999887 999886
No 42
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=100.00 E-value=1.4e-66 Score=590.42 Aligned_cols=377 Identities=29% Similarity=0.473 Sum_probs=300.7
Q ss_pred EEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHH
Q 002136 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVW 171 (961)
Q Consensus 92 f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~ 171 (961)
|+||+|+|||||.|||||+++++.+|+++||+||+|++|+|++|+|+||++++.+ +.++|++|++
T Consensus 1 ~~ITt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~----A~~~g~~p~~----------- 65 (391)
T PF09334_consen 1 FYITTPIPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETA----AEKQGIDPEE----------- 65 (391)
T ss_dssp EEEEEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHH----HHHTTS-HHH-----------
T ss_pred CEEecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHH----HHHcCCCHHH-----------
Confidence 7899999999999999999999999999999999999999999999999996554 4567988764
Q ss_pred HHHHHHHHHHHHHHHHhCCccC-CCCCccCCChhhHHHHHHHHHHHHhcCceEEcCeeeecCCCCCccccccccccccCC
Q 002136 172 EWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEP 250 (961)
Q Consensus 172 ~~~~~~~~~i~~~l~~lG~s~D-w~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~w~p~~~t~lsd~Ev~~~e~~ 250 (961)
+++++++.|++.+++|||++| |.| |+++.|.++|+++|.+|+++|+||++++.+.||+.|++.++|.+|+
T Consensus 66 -~~~~~~~~~~~~~~~~~I~~D~F~r---Tt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl~e~~v~----- 136 (391)
T PF09334_consen 66 -FCDKYSAKFKELLEALNISYDRFIR---TTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFLPESFVE----- 136 (391)
T ss_dssp -HHHHHHHHHHHHHHHTT---SEEEE---TTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGET-----
T ss_pred -HHHHHHHHHHHHHHHcCCCCcceeC---CCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCcccccceee-----
Confidence 357899999999999999999 666 8999999999999999999999999999999999999999997773
Q ss_pred CeEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCchhhhhccCeeeccCCCCCeeeeeecCccccCCCcceeEeC
Q 002136 251 GTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKIS 330 (961)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~v~~~ 330 (961)
..|
T Consensus 137 -----------------------------------------------------------------------------g~C 139 (391)
T PF09334_consen 137 -----------------------------------------------------------------------------GTC 139 (391)
T ss_dssp -----------------------------------------------------------------------------CEE
T ss_pred -----------------------------------------------------------------------------ccc
Confidence 124
Q ss_pred CCCChhHHHHHHHhCCCceeecCCCCcccccccccCCCchHHHHHHHHHHHHHcCCccccccccccCCcccCCCCceeee
Q 002136 331 PGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPL 410 (961)
Q Consensus 331 Pah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~ 410 (961)
|.|+.. +..|..|+.||.. .++.+...|+|..||.+++.+
T Consensus 140 P~C~~~----------------~a~g~~Ce~cG~~------------------------~~~~~l~~p~~~~~g~~~~~r 179 (391)
T PF09334_consen 140 PYCGSD----------------KARGDQCENCGRP------------------------LEPEELINPVCKICGSPPEVR 179 (391)
T ss_dssp TTT--S----------------SCTTTEETTTSSB------------------------EECCCSECEEETTTS-B-EEE
T ss_pred cCcCcc----------------ccCCCcccCCCCC------------------------cccccccCCccccccccCccc
Confidence 544422 2578899999964 677888999999999999999
Q ss_pred eccceeeeccHHHHHHHHHHHcCCceeechhHHHHHHHHHhc-CCCceeeeccCCCcccceEEEcCCcccEEEecChHHH
Q 002136 411 VSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSN-IKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEA 489 (961)
Q Consensus 411 ~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~~-l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~ 489 (961)
.++||||+++++++.+.+++++... +.|+..++...+||++ |+||||||...||+|+|. .
T Consensus 180 ~e~~~ff~L~~~~~~L~~~l~~~~~-~~~~~~~~~~~~~l~~~L~d~~Is~~~~WGI~vP~------~------------ 240 (391)
T PF09334_consen 180 EEENYFFKLSKFRDQLREWLESNPD-FPPPRVREIVRNWLKEGLPDLSISRPLDWGIPVPG------D------------ 240 (391)
T ss_dssp EEEEEEE-GGGGHHHHHHHHHHSTT-SSHHHHHHHHHHHHHT----EE-ECTTSSSEEETT------E------------
T ss_pred cceEEEEehHHhHHHHHHHHhcCCC-CCChhHHHHHHHHhhcccCceeeecCCCCcceeec------c------------
Confidence 9999999999999999999986543 3778888899999964 999999999999999991 1
Q ss_pred HHHHHhhcCCCcccccCCCceeeeecCCCccccccCCCC---CChhHHhhcCC-----cceEeeeccccccHHHHHHHHH
Q 002136 490 LEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPD---VSADDFKKFYP-----TTMLETGHDILFFWVARMVMMG 561 (961)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~dvldtWf~S~l~~~~~~~~p~---~~~~~~~~~~P-----~d~~~~G~Dil~fw~~~~i~~~ 561 (961)
+..|++||||+.+.|++..++.. ....+|+++|+ ..+++.|+||++||.....++.
T Consensus 241 ----------------~~~~iyVWfdal~~Ylt~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~~pa~l 304 (391)
T PF09334_consen 241 ----------------PGQVIYVWFDALIGYLTATGYLAEKRGDPEEFKKWWANDSDVEIVHFIGKDIIRFHAIYWPAML 304 (391)
T ss_dssp ----------------EEEEE-HHHHHHTHHHHTTTTTHHHTTTSHHHHHHHCST--SEEEEEEEGGGHHHHHTHHHHHH
T ss_pred ----------------CCceEEEcchHHHHHHHHhccccccccccchhhhhccccCCceEEEEEccchhHHHHHHhHHHH
Confidence 23699999999999999888765 22367888882 2399999999987443333333
Q ss_pred hHhcCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHhCCC-CCccccCHHHHHH--HHHHHHH
Q 002136 562 IEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTA--NKAFTNK 638 (961)
Q Consensus 562 ~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~~~-~~D~~f~~~~~~~--~~~~~nk 638 (961)
++..-.+| +++++|||++ .+|+|||||+||+|+|.+++++||+|++||||++..+ ++|.+|+++.+.+ +..+.|+
T Consensus 305 ~a~~~~lP-~~i~~~~~~~-~~g~K~SkS~gn~i~~~~~~~~~~~D~~R~~L~~~~~~~~d~~F~~~~~~~~~n~~L~~~ 382 (391)
T PF09334_consen 305 LAAGLPLP-RRIVVHGFLT-LDGEKMSKSRGNVIWPDDLLEEYGADALRYYLAREGPEGQDSDFSWEDFIERVNNELANT 382 (391)
T ss_dssp HHCTB----SEEEEE--EE-ETTCCEETTTTESSBHHHHHHHH-HHHHHHHHHHHSSTTS-EEE-HHHHHHHHHHCCCCC
T ss_pred hcccCCCC-CEEEeeeeEE-ECCeeccccCCcccCHHHHHHhCChHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHh
Confidence 33333456 8999999998 8999999999999999999999999999999999888 9999999999977 5678899
Q ss_pred HHHHHHHH
Q 002136 639 LWNAGKFI 646 (961)
Q Consensus 639 l~N~~rf~ 646 (961)
+.|++.++
T Consensus 383 ~gNl~~R~ 390 (391)
T PF09334_consen 383 LGNLVNRV 390 (391)
T ss_dssp HHHHHHHH
T ss_pred hhhHHhcc
Confidence 99988765
No 43
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=100.00 E-value=6.6e-61 Score=534.26 Aligned_cols=313 Identities=29% Similarity=0.448 Sum_probs=270.3
Q ss_pred CEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHH
Q 002136 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRV 170 (961)
Q Consensus 91 ~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~ 170 (961)
+|+|++|||||||.|||||+++++++|+++||+||+|++|++++|||+||++|+.++ +++|+++.
T Consensus 1 ~~~it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a----~~~g~~~~----------- 65 (319)
T cd00814 1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKA----EEEGVTPQ----------- 65 (319)
T ss_pred CEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHH----HHcCCCHH-----------
Confidence 589999999999999999999999999999999999999999999999999976655 45687765
Q ss_pred HHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCceEEcCeeeecCCCCCccccccccccccCC
Q 002136 171 WEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEP 250 (961)
Q Consensus 171 ~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~w~p~~~t~lsd~Ev~~~e~~ 250 (961)
++++.+.+.|++++++||+++| ..+.|+++.|.+.|+++|.+|+++|+||+++..+.|||.|+++|+
T Consensus 66 -e~~~~~~~~~~~~l~~LgI~~D--~~~~tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~---------- 132 (319)
T cd00814 66 -ELCDKYHEIFKDLFKWLNISFD--YFIRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLP---------- 132 (319)
T ss_pred -HHHHHHHHHHHHHHHHcCCcCC--CCeeCCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEee----------
Confidence 3457889999999999999888 223488999999999999999999999999999999999987765
Q ss_pred CeEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCchhhhhccCeeeccCCCCCeeeeeecCccccCCCcceeEeC
Q 002136 251 GTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKIS 330 (961)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~v~~~ 330 (961)
T Consensus 133 -------------------------------------------------------------------------------- 132 (319)
T cd00814 133 -------------------------------------------------------------------------------- 132 (319)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCChhHHHHHHHhCCCceeecCCCCcccccccccCCCchHHHHHHHHHHHHHcCCccccccccccCCcccCCCCceeee
Q 002136 331 PGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPL 410 (961)
Q Consensus 331 Pah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~ 410 (961)
|++
T Consensus 133 -----------------------------------------------------------------------------e~~ 135 (319)
T cd00814 133 -----------------------------------------------------------------------------EWR 135 (319)
T ss_pred -----------------------------------------------------------------------------EEE
Confidence 234
Q ss_pred eccceeeeccHHHHHHHHHHHcCCceeechhHHHHHHHHHhc-CCCceeeecc-CCCcccceEEEcCCcccEEEecChHH
Q 002136 411 VSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSN-IKDWCISRQL-WWGHRIPVWYIVGKEEEYIVARNADE 488 (961)
Q Consensus 411 ~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~~-l~DW~ISRq~-~WG~pIP~~~~~~~~~~~~~~~~~~~ 488 (961)
.++||||+++++++.++++++++...+.|+..++.+.+||++ ++|||||||. +||+|+|.
T Consensus 136 ~~~~~ff~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~d~~isR~~~~WGipvp~------------------ 197 (319)
T cd00814 136 EEEHYFFRLSKFQDRLLEWLEKNPDFIWPENARNEVLSWLKEGLKDLSITRDLFDWGIPVPL------------------ 197 (319)
T ss_pred eeeeEEEEhHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHhCCCcccCCCccCcccCeeCCC------------------
Confidence 467999999999999999998877668999999999999985 9999999999 99999993
Q ss_pred HHHHHHhhcCCCcccccCCCceeeeecCCCccccccCCCCCCh---hHHhhcCCcceEeeeccccccHHHHHHHHHhHhc
Q 002136 489 ALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSA---DDFKKFYPTTMLETGHDILFFWVARMVMMGIEFT 565 (961)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~dvldtWf~S~l~~~~~~~~p~~~~---~~~~~~~P~d~~~~G~Dil~fw~~~~i~~~~~l~ 565 (961)
-+.++++|||||.+.|++..+++.... ..|...+|.+++++|+||++||.....++..++
T Consensus 198 ----------------~~~~~~yvWfda~~~y~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~D~~~fh~~~~pa~l~~~- 260 (319)
T cd00814 198 ----------------DPGKVIYVWFDALIGYISATGYYNEEWGNSWWWKDGWPELVHFIGKDIIRFHAIYWPAMLLGA- 260 (319)
T ss_pred ----------------CCCcEEEEehhhHHHHHHHcccccccccchhhhhcCCCceEEEEeechhhhhHHHHHHHHHhC-
Confidence 023799999999999998888875541 246677899999999999997433222221222
Q ss_pred CCCCceEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHhCCC-CCcccc
Q 002136 566 GSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSL 624 (961)
Q Consensus 566 ~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~~~-~~D~~f 624 (961)
+..|++.+++||+++ .+|+|||||+||+|+|.+++++||+|++||||++..+ ++|.+|
T Consensus 261 ~~~~~~~~~~~~~~~-~~g~kmSkS~gn~i~~~~~l~~~~~d~~R~~l~~~~~~~~d~~f 319 (319)
T cd00814 261 GLPLPTRIVAHGYLT-VEGKKMSKSRGNVVDPDDLLERYGADALRYYLLRERPEGKDSDF 319 (319)
T ss_pred CCCCCcEeeeeeeEE-ECCeeecccCCcccCHHHHHHHcCchHHHHHHHhcCCCCCCCCC
Confidence 345569999999998 6899999999999999999999999999999999998 999987
No 44
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=1.2e-56 Score=498.05 Aligned_cols=297 Identities=30% Similarity=0.495 Sum_probs=254.5
Q ss_pred CEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHH
Q 002136 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRV 170 (961)
Q Consensus 91 ~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~ 170 (961)
+|+|++|||||||.+||||+++++++|+++||+||+|++|++++|+|+||+|++..+ ++.|.+ |
T Consensus 1 k~~it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a----~~~g~~------------~ 64 (314)
T cd00812 1 KFYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAA----IKIGRD------------P 64 (314)
T ss_pred CeEEecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHH----HHcCCC------------H
Confidence 589999999999999999999999999999999999999999999999999976654 345764 4
Q ss_pred HHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCceEEcCeeeecCCCCCccccccccccccCC
Q 002136 171 WEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEP 250 (961)
Q Consensus 171 ~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~w~p~~~t~lsd~Ev~~~e~~ 250 (961)
.+|++++.+.+++++++||+++||.+.+.|++|.|.++|+++|.+|+++|+||++.++|+||
T Consensus 65 ~e~~~~~~~~~~~~~~~lgi~~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~------------------ 126 (314)
T cd00812 65 EDWTEYNIKKMKEQLKRMGFSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAPVNWC------------------ 126 (314)
T ss_pred HHHHHHHHHHHHHHHHHhccceecccccccCCHHHHHHHHHHHHHHHHCCCEEecCceeeee------------------
Confidence 56788999999999999999999998888999999999999999999999999999999886
Q ss_pred CeEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCchhhhhccCeeeccCCCCCeeeeeecCccccCCCcceeEeC
Q 002136 251 GTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKIS 330 (961)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~v~~~ 330 (961)
T Consensus 127 -------------------------------------------------------------------------------- 126 (314)
T cd00812 127 -------------------------------------------------------------------------------- 126 (314)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCChhHHHHHHHhCCCceeecCCCCcccccccccCCCchHHHHHHHHHHHHHcCCccccccccccCCcccCCCCceeee
Q 002136 331 PGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPL 410 (961)
Q Consensus 331 Pah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~ 410 (961)
+
T Consensus 127 -------------------------------------------------------------------------------~ 127 (314)
T cd00812 127 -------------------------------------------------------------------------------K 127 (314)
T ss_pred -------------------------------------------------------------------------------C
Confidence 1
Q ss_pred eccceeeec--cHHHHHHHHHHHcCCceeechhHHHHHHHHHhcCCCceeeeccCCCcccceEEEcCCcccEEEecChHH
Q 002136 411 VSKQWFVTM--EPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADE 488 (961)
Q Consensus 411 ~~~qwF~~~--~~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~ 488 (961)
.++||||++ +++++++.+++++. .+.|+..++.+.+|++ ||||++||+|+|+
T Consensus 128 ~~~~~f~~l~~~~~~~~l~~~l~~~--~~~p~~~~~~~~~~l~------isR~~~wGipvP~------------------ 181 (314)
T cd00812 128 LLDQWFLKYSETEWKEKLLKDLEKL--DGWPEEVRAMQENWIG------CSRQRYWGTPIPW------------------ 181 (314)
T ss_pred ccceEEEEcCcHHHHHHHHHHHHhc--CcCCHHHHHHHHHHhe------eeeecCCcCCcCc------------------
Confidence 256999999 99999999999864 4799999999999997 9999999999994
Q ss_pred HHHHHHhhcCCCcccccCCCceeeeecCCCc---cccccCCCCC-------ChhHHhhcCCcceEeeeccccccHHHHHH
Q 002136 489 ALEKAHQKYGKNVEIYQDPDVLDTWFSSALW---PFSTLGWPDV-------SADDFKKFYPTTMLETGHDILFFWVARMV 558 (961)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~dvldtWf~S~l~---~~~~~~~p~~-------~~~~~~~~~P~d~~~~G~Dil~fw~~~~i 558 (961)
.+|+|+||||.+. |.+....... .+++|++|||.|++++|+||++||...++
T Consensus 182 ------------------~~~i~~w~ds~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~w~p~di~v~G~D~i~~h~~~~~ 243 (314)
T cd00812 182 ------------------TDTMESLSDSTWYYARYTDAHNLEQPYEGDLEFDREEFEYWYPVDIYIGGKEHAPNHLLYSR 243 (314)
T ss_pred ------------------ccccccccccHHHHHHHHhcccccCcchhhhhhhHHHHHHhCCCeeeecchhHHHHHHHHHH
Confidence 2589999999863 3332221111 23579999999999999999988854333
Q ss_pred HHHhHhc--C---CCCceEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHhCCCCCccccCH
Q 002136 559 MMGIEFT--G---SVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSI 626 (961)
Q Consensus 559 ~~~~~l~--~---~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~~~~~D~~f~~ 626 (961)
+....+. | ..|++++.+||+|+ .+|+|||||+||+|+|.|++++||+|++||||++.++ .|.+|++
T Consensus 244 ~~~~~l~~~g~~~~~~~~~~~~~g~v~-~~g~KmSkS~Gn~v~~~dll~~~~~Da~R~~ll~~~~-~~~~f~~ 314 (314)
T cd00812 244 FNHKALFDEGLVTDEPPKGLIVQGMVL-LEGEKMSKSKGNVVTPDEAIKKYGADAARLYILFAAP-PDADFDW 314 (314)
T ss_pred HHHHHHcCcccccccCcHHheecceEe-cCccccCCcCCCCCCHHHHHHHhCcHHHHHHHHhcCC-cCCCCCC
Confidence 3333332 2 13568999999998 7999999999999999999999999999999999888 8888764
No 45
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-52 Score=442.99 Aligned_cols=494 Identities=19% Similarity=0.270 Sum_probs=393.9
Q ss_pred CCCCCEEEeCCCCCcCCCCCCchhhHh-HHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHH
Q 002136 87 RGSDPFVISMPPPNVTGSLHMGHAMFV-TLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDE 165 (961)
Q Consensus 87 ~~~~~f~i~~ppPy~nG~LHiGHa~~~-~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~ 165 (961)
.++..-+|+...||+|..+|+|++-+. ..+||+|||.+.+|++.++++|||+.|.+++.+ +.++|.+|++++
T Consensus 11 ~n~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetk----aleeg~tP~elc--- 83 (567)
T KOG1247|consen 11 PNERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETK----ALEEGLTPQELC--- 83 (567)
T ss_pred CCccceeeecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHH----HHHccCCHHHHH---
Confidence 345668899999999999999999985 559999999999999999999999999998655 356899998774
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCccC-CCCCccCCChhhHHHHHHHHHHHHhcCceEEcCeeeecCCCCCcccccccc
Q 002136 166 FTKRVWEWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEV 244 (961)
Q Consensus 166 f~~~~~~~~~~~~~~i~~~l~~lG~s~D-w~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~w~p~~~t~lsd~Ev 244 (961)
++|+..++..+..++|++| +.| |+.+...+.+|.+|.+|+++|+.-...-.+.+|+.|++.|+|..|
T Consensus 84 ---------dKyh~ihk~vy~Wf~IdfD~fgr---tTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~vc~~fladr~v 151 (567)
T KOG1247|consen 84 ---------DKYHGIHKVVYDWFKIDFDEFGR---TTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEVCDTFLADRFV 151 (567)
T ss_pred ---------HhcchhHHHHHHhhcccccccCc---ccCcchhHHHHHHhhchhhcCCcccceeeeEEehhhcccccchhh
Confidence 7889999999999999999 555 888889999999999999999999999999999999999999655
Q ss_pred ccccCCCeEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCchhhhhccCeeeccCCCCCeeeeeecCccccCCCc
Q 002136 245 EYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGT 324 (961)
Q Consensus 245 ~~~e~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GT 324 (961)
+
T Consensus 152 e------------------------------------------------------------------------------- 152 (567)
T KOG1247|consen 152 E------------------------------------------------------------------------------- 152 (567)
T ss_pred h-------------------------------------------------------------------------------
Confidence 2
Q ss_pred ceeEeCCCCChhHHHHHHHhCCCceeecCCCCcccccccccCCCchHHHHHHHHHHHHHcCCccccccccccCCcccCCC
Q 002136 325 GVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGG 404 (961)
Q Consensus 325 G~v~~~Pah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~ 404 (961)
..||.|+.+| ..|.+|++||.. ........|.|..|.
T Consensus 153 ---g~cp~C~yd~----------------ARGDqcd~cG~l------------------------~N~~el~~pkc~ic~ 189 (567)
T KOG1247|consen 153 ---GKCPFCGYDD----------------ARGDQCDKCGKL------------------------VNAAELKIPKCKICQ 189 (567)
T ss_pred ---ccCCCCCCcc----------------ccchhhhhhhhh------------------------cCHHHhcCcchheec
Confidence 1266666653 689999999974 344567789999999
Q ss_pred CceeeeeccceeeeccHHHHHHHHHHHcCCc-eeechhHHHHHHHHH-hcCCCceeeeccCCCcccceEEEcCCcccEEE
Q 002136 405 EVIEPLVSKQWFVTMEPLAEKALHAVEKGEL-TIMPERFEKIYNHWL-SNIKDWCISRQLWWGHRIPVWYIVGKEEEYIV 482 (961)
Q Consensus 405 ~~v~~~~~~qwF~~~~~~~~~~~~~~~~~~~-~~~P~~~~~~~~~wl-~~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~ 482 (961)
...+++.+.+.|+.+++++.++.++++...+ --...+.+.+.+.|| ++++..||||.+.||+|+|. ++|
T Consensus 190 ~~p~~~~t~h~Fl~L~kl~~~lee~~~~~~~~~~WS~Na~~it~sWlk~gl~pRCiTRDLkWGtpVPl-------e~f-- 260 (567)
T KOG1247|consen 190 AGPVVRQTQHLFLSLDKLEPRLEEWLRRTLVEGDWSQNAQNITRSWLKDGLKPRCITRDLKWGTPVPL-------EKF-- 260 (567)
T ss_pred cCCeeeeeeEEEEEhHHhHHHHHHHHHhccccCCCccchHHHHHHHHHccccccccccccccCCCcCh-------hhh--
Confidence 9999999999999999999999999975321 124456788999999 58999999999999999993 111
Q ss_pred ecChHHHHHHHHhhcCCCcccccCCCceeeeecCCCccccccCCCCCChhHHhhcCCcc-----eEeeeccccccHHHHH
Q 002136 483 ARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTT-----MLETGHDILFFWVARM 557 (961)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~dvldtWf~S~l~~~~~~~~p~~~~~~~~~~~P~d-----~~~~G~Dil~fw~~~~ 557 (961)
...|++||||+.+.|.+... .-+ ++|++||..- +.+.|+|++.||-..+
T Consensus 261 -----------------------k~KVfYVWFDA~IGYlsit~--~yt-~ew~kWwknpE~v~LyqFmgKDNVpFHtviF 314 (567)
T KOG1247|consen 261 -----------------------KDKVFYVWFDAPIGYLSITK--NYT-DEWEKWWKNPENVELYQFMGKDNVPFHTVIF 314 (567)
T ss_pred -----------------------cccEEEEEEcCcceEEEeeh--hhh-HHHHHHhcCHhhhhHHHHhccCCCcceeeec
Confidence 24699999999988877421 112 6899998432 5578999999876544
Q ss_pred HHHHhHhcCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhh-cChhHHHHHHHhCCC-CCccccCHHHHHH--HH
Q 002136 558 VMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE-FGADALRFTISLGTA-GQDLSLSIERLTA--NK 633 (961)
Q Consensus 558 i~~~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~-yGaDalR~~L~~~~~-~~D~~f~~~~~~~--~~ 633 (961)
-.+.++...+.+.-+-+.---.++.+..|+|||+|.+|...++-+. .++|..||||++..| ++|..|+++.+.. ++
T Consensus 315 P~s~lgt~en~t~v~~l~aTeYLnyE~gKFSKSrgvGvFG~~aqd~gi~~~vWRyYLl~~RPEssDs~Fsw~df~~k~ns 394 (567)
T KOG1247|consen 315 PCSQLGTEENYTVVHHLSATEYLNYEDGKFSKSRGVGVFGNDAQDTGIPASVWRYYLLYIRPESSDSAFSWDDFVLKVNS 394 (567)
T ss_pred chhhhcCCCCchhheeechhhhhccccCcccccccccccccccccCCCCHHHHHHHHhhccCcccCCcCcHHHHHHHhhH
Confidence 4444443444443222222223357889999999999999999885 899999999999999 9999999999976 78
Q ss_pred HHHHHHHHHHHHHHhhC----CCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhhhcCChHHHHHH
Q 002136 634 AFTNKLWNAGKFILQNL----PSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRE 709 (961)
Q Consensus 634 ~~~nkl~N~~rf~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~ 709 (961)
.++|.|+|++.+++..+ .+..+ .-.+..-|+-+++.++.+..+..++||.-.+++|++.
T Consensus 395 eLl~NLGNFvNR~l~fv~~~~~g~Vp-----------------~~~~~~~~~~~~~dv~~~~~~y~~~me~vklr~~l~~ 457 (567)
T KOG1247|consen 395 ELLNNLGNFVNRVLKFVAAKYNGVVP-----------------EMELTSGDKKLLEDVNELLAKYVAAMEKVKLREALKT 457 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCccc-----------------ceeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999876665543 22222 1133445889999999999999999999999999999
Q ss_pred HHHHHHHhhhHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhcCC
Q 002136 710 TYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR 775 (961)
Q Consensus 710 i~~f~~~~~~n~Yle~~K~~l~~~~~~~~~~~~~~~l~~vl~~~l~LL~Pf~P~itEeiw~~L~~~ 775 (961)
+++. ....|.||+..+.+.....+.+.......+...++-.+..||+||||-++.+|..+|+..
T Consensus 458 ~m~i--s~~GNqylQ~~~~~k~~~~~r~r~~~vi~~a~nii~lvs~ll~P~mP~~s~~I~kqlnlp 521 (567)
T KOG1247|consen 458 AMEI--SRRGNQYLQENTDNKLYEESRQRAGTVIGLAANIIYLVSVLLYPYMPTTSAEILKQLNLP 521 (567)
T ss_pred HHHH--HHhhhHHHhcccccchhhhcccccceeeehhhHHHHHHHHHhccccccchHHHHHHhCCc
Confidence 9998 578999999887442222222233344455666777788999999999999999999864
No 46
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=100.00 E-value=9.3e-43 Score=404.93 Aligned_cols=359 Identities=23% Similarity=0.285 Sum_probs=269.5
Q ss_pred CCCCCCCCCCCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCcc
Q 002136 80 YFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRV 159 (961)
Q Consensus 80 ~f~~~~~~~~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~ 159 (961)
.|++... +..+++++- |+|+|.+||||+++++..|+++||+||+||+|+|++|+|++|.+|. +.+++.|.++.
T Consensus 15 ~f~p~~~-~~v~~yvcg--Ptvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~----~~A~~~g~~~~ 87 (463)
T PRK00260 15 EFKPLEP-GKVKMYVCG--PTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKII----KRANEEGESIK 87 (463)
T ss_pred ecccCCC-CcceEEEeC--CccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHH----HHHHHcCCCHH
Confidence 4554322 233444443 6778999999999999999999999999999999999999998854 34556787654
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-ccCCCCCccCCChhhHHHHHHHHHHHHhcCceEEcCeeeecCCCCCcc
Q 002136 160 ELSRDEFTKRVWEWKEKYGGTITSQIKRLGA-SCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTA 238 (961)
Q Consensus 160 ~~~~~~f~~~~~~~~~~~~~~i~~~l~~lG~-s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~w~p~~~t~ 238 (961)
++++++.+.+.++|++||+ +.||.. ..| +|...+++++.+|+++|++|+++.+|+||+..-
T Consensus 88 ------------e~~~~~~~~f~~~~~~Lgi~~~d~~~-r~t---~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~~-- 149 (463)
T PRK00260 88 ------------ELTERYIAAFHEDMDALNVLPPDIEP-RAT---EHIPEIIELIERLIDKGHAYEADGDVYFDVRKF-- 149 (463)
T ss_pred ------------HHHHHHHHHHHHHHHHcCCCCCCccc-ccc---ccHHHHHHHHHHHHHCCCEEEecCeEEEecccc--
Confidence 4567899999999999999 567653 223 488889999999999999999999999998642
Q ss_pred ccccccccccCCCeEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCchhhhhccCeeeccCCCCCeeeeeecCcc
Q 002136 239 VSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYV 318 (961)
Q Consensus 239 lsd~Ev~~~e~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V 318 (961)
+.|..|.|.....=. .|. -|
T Consensus 150 ---------------------------------------------------~~yg~ls~~~~~~~~-~~~--------~~ 169 (463)
T PRK00260 150 ---------------------------------------------------PDYGKLSGRNLDELQ-AGA--------RV 169 (463)
T ss_pred ---------------------------------------------------cccccCCCCCHHHHh-ccC--------cC
Confidence 112122111100000 000 01
Q ss_pred ccCCCcceeEeCCCCChhHHHHHHHhCCCceeecCCCCcccccccccCCCchHHHHHHHHHHHHHcCCccccccccccCC
Q 002136 319 DKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVP 398 (961)
Q Consensus 319 ~~~~GTG~v~~~Pah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p 398 (961)
+.+. =-++|.||.++|+.+
T Consensus 170 ~~~~--------~K~~~~DF~Lwk~~~----------------------------------------------------- 188 (463)
T PRK00260 170 EVAE--------EKRDPLDFALWKAAK----------------------------------------------------- 188 (463)
T ss_pred Cccc--------CCCCccccceecCCC-----------------------------------------------------
Confidence 1110 024566666664321
Q ss_pred cccCCCCceeeeeccceeeeccHHHHHHHHHHHcCCceeechhHHHHHHHHHhcCCCceeeeccCCCcccceEEEcCCcc
Q 002136 399 RSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEE 478 (961)
Q Consensus 399 ~~~r~~~~v~~~~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~pIP~~~~~~~~~ 478 (961)
+|+ .-| .-.||.--|-|++++.
T Consensus 189 ----~~~------------------------------------------------~~w----~s~~g~grpgWhiecs-- 210 (463)
T PRK00260 189 ----PGE------------------------------------------------PSW----ESPWGKGRPGWHIECS-- 210 (463)
T ss_pred ----CCC------------------------------------------------CCC----CCCCCCCCCChhHHHH--
Confidence 010 001 1246777788887530
Q ss_pred cEEEecChHHHHHHHHhhcCCCcccccCCCceeeeecCCCccccccCCCCCChhHHhhcCCcceEeeeccccccHHHHHH
Q 002136 479 EYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMV 558 (961)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvldtWf~S~l~~~~~~~~p~~~~~~~~~~~P~d~~~~G~Dil~fw~~~~i 558 (961)
. +....+| -|.|++.+|.|++|.|+.+++
T Consensus 211 --------------------------------------a-m~~~~lg------------~~~Dih~gG~DlifpHh~nei 239 (463)
T PRK00260 211 --------------------------------------A-MSTKYLG------------ETFDIHGGGADLIFPHHENEI 239 (463)
T ss_pred --------------------------------------H-HHHHhcC------------CCcceecCccccCCCchHhHH
Confidence 0 0001111 357899999999999999999
Q ss_pred HHHhHhcCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHhCCCCCccccCHHHHHHHHHHHHH
Q 002136 559 MMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNK 638 (961)
Q Consensus 559 ~~~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~~~~~D~~f~~~~~~~~~~~~nk 638 (961)
+.+.+++| .||.++++|+.+++.+|+|||||+||+|+|.|++++||+|++||+++++.+.++++|+.+.+...++++++
T Consensus 240 aqs~a~~g-~p~~~~w~H~g~v~~~G~KMSKS~GN~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~~~r 318 (463)
T PRK00260 240 AQSEAATG-KPFANYWMHNGFVTVNGEKMSKSLGNFFTIRDLLKKYDPEVLRFFLLSAHYRSPLNFSEEALEQAKKALER 318 (463)
T ss_pred HHHHHhcC-CCcceEEEEccEEccCCCcccCcCCCCCCHHHHHHHcCchHhHHHHHhCCCCCCCccCHHHHHHHHHHHHH
Confidence 99999998 89999999988888999999999999999999999999999999999877799999999999999999999
Q ss_pred HHHHHHHHHhhCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhhh-cCChHHHHHHHHHHHHHh
Q 002136 639 LWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYD-KYFFGDVGRETYDFFWSD 717 (961)
Q Consensus 639 l~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e-~~~f~~A~~~i~~f~~~~ 717 (961)
+||+++++.. ...|.|++++++.+++++.++|+ +|+++.|+..|++|+ +
T Consensus 319 l~~~~~~~~~----------------------------~~~d~~~~~~l~~~~~~~~~al~ddln~~~Al~~l~~lv--~ 368 (463)
T PRK00260 319 LYNALAETAL----------------------------GEDDEALLAELEEFKERFIEAMDDDFNTPEALAVLFELA--R 368 (463)
T ss_pred HHHHHHHhhh----------------------------ccchhhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH--H
Confidence 9999987641 11467889999999999999995 999999999999997 3
Q ss_pred hhHHHHH
Q 002136 718 FADWYIE 724 (961)
Q Consensus 718 ~~n~Yle 724 (961)
..|+|+.
T Consensus 369 ~~n~~~~ 375 (463)
T PRK00260 369 EINRALE 375 (463)
T ss_pred HHHHHhh
Confidence 4677764
No 47
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=100.00 E-value=5.8e-38 Score=374.23 Aligned_cols=380 Identities=20% Similarity=0.246 Sum_probs=272.5
Q ss_pred CCCCCCCCCCCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHH-HcCCCeeecCCCCCCCchHHHHHHHHHHHcCCC-
Q 002136 80 YFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHR-MKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIK- 157 (961)
Q Consensus 80 ~f~~~~~~~~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~r-m~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~- 157 (961)
-|.|.. .+.=.++++.|.+| +.+|||||++++..|++.||.| ..||+|.|++|+|+||-+|. +.+++.|++
T Consensus 52 ~f~p~~-~~~v~~Y~CGPTvY--d~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi----~~A~~~g~~~ 124 (651)
T PTZ00399 52 EFVPQN-GRQVRWYTCGPTVY--DSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKII----KRAREEKLSI 124 (651)
T ss_pred ccccCC-CCeeEEEEeCCCcc--CCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHH----HHHHHhCCCc
Confidence 355433 23446788887777 9999999999999999999999 99999999999999998853 445667887
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCceEEcCeeeecCCCCCc
Q 002136 158 RVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQT 237 (961)
Q Consensus 158 ~~~~~~~~f~~~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~w~p~~~t 237 (961)
+.++ ++.|.+.+.++|++||+..+ .+.|.-.+|...+..++.+|.++|++|.+..-|+++...
T Consensus 125 ~~el------------~~~~~~~f~~d~~~Lni~~p---~~~~r~tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~~-- 187 (651)
T PTZ00399 125 FLEL------------ARKWEKEFFEDMKALNVRPP---DVITRVSEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEA-- 187 (651)
T ss_pred HHHH------------HHHHHHHHHHHHHHcCCCCC---ccccCcCccHHHHHHHHHHHHHCCCEEEECCeEEEEchh--
Confidence 5543 47788899999999999987 223333689999999999999999999986655543321
Q ss_pred cccccccccccCCCeEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCchhhhhccCeeeccCCCCCeeeeeecCc
Q 002136 238 AVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKY 317 (961)
Q Consensus 238 ~lsd~Ev~~~e~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~ 317 (961)
|+-. ...|..|. |-. . .+-
T Consensus 188 --------------------f~~~---------------------------~~~Yg~L~------p~~-~-------~~~ 206 (651)
T PTZ00399 188 --------------------FRKA---------------------------GHVYPKLE------PES-V-------ADE 206 (651)
T ss_pred --------------------cccc---------------------------hhhHHhhC------hhh-c-------CCH
Confidence 1000 00121111 100 0 001
Q ss_pred cccCCCccee-EeC-CCCChhHHHHHHHhCCCceeecCCCCcccccccccCCCchHHHHHHHHHHHHHcCCccccccccc
Q 002136 318 VDKEFGTGVL-KIS-PGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTL 395 (961)
Q Consensus 318 V~~~~GTG~v-~~~-Pah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~ 395 (961)
..+..|.|.+ ..+ =..++.||.+|+..
T Consensus 207 ~~~~~g~~~l~~~~~~Kr~~~DFaLWk~~--------------------------------------------------- 235 (651)
T PTZ00399 207 DRIAEGEGALGKVSGEKRSPNDFALWKAS--------------------------------------------------- 235 (651)
T ss_pred HHHhcccCCccccCcCCCCCccHHhhCCC---------------------------------------------------
Confidence 1111233311 111 13344555554311
Q ss_pred cCCcccCCCCceeeeeccceeeeccHHHHHHHHHHHcCCceeechhHHHHHHHHHhcCCCceeeeccCCCcccceEEEcC
Q 002136 396 RVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVG 475 (961)
Q Consensus 396 ~~p~~~r~~~~v~~~~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~pIP~~~~~~ 475 (961)
.| |+ | .|- -.||---|.|++++
T Consensus 236 ---------kp--------------------------ge----p---------------~W~----SpwG~GrPGWHiEC 257 (651)
T PTZ00399 236 ---------KP--------------------------GE----P---------------SWD----SPWGKGRPGWHIEC 257 (651)
T ss_pred ---------CC--------------------------CC----C---------------CCC----CCCCCCCCCchHHH
Confidence 00 00 0 122 35666678887742
Q ss_pred CcccEEEecChHHHHHHHHhhcCCCcccccCCCceeeeecCCCccccccCCCCCChhHHhhcCCcceEeeeccccccHHH
Q 002136 476 KEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVA 555 (961)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvldtWf~S~l~~~~~~~~p~~~~~~~~~~~P~d~~~~G~Dil~fw~~ 555 (961)
. + +.-..+| +|.|+|..|.|++|.|+-
T Consensus 258 --s----------a-----------------------------m~~~~lg------------~~~DIh~gG~DL~FPHHe 284 (651)
T PTZ00399 258 --S----------A-----------------------------MASNILG------------DPIDIHSGGIDLKFPHHD 284 (651)
T ss_pred --H----------H-----------------------------HHHHHcC------------CcceeeccCCCCCCCcch
Confidence 0 0 0000111 378999999999999999
Q ss_pred HHHHHHhHhcCCCCceEEEEe-ceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHhCCCCCccccCHHHHHHHHH
Q 002136 556 RMVMMGIEFTGSVPFSHVYLH-GLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKA 634 (961)
Q Consensus 556 ~~i~~~~~l~~~~Pfk~v~~h-g~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~~~~~D~~f~~~~~~~~~~ 634 (961)
..++.+.+++|+.||.++++| |||. .+|+|||||+||+|+|.|++++||+|++||||++..+++|++|+++.+....+
T Consensus 285 NEiAQseA~~~~~~~v~y~~H~G~L~-i~G~KMSKSLGNfItp~dlLekygaDaLR~~lLs~~~~~dldFS~e~l~~a~~ 363 (651)
T PTZ00399 285 NELAQSEAYFDKHQWVNYFLHSGHLH-IKGLKMSKSLKNFITIRQALSKYTARQIRLLFLLHKWDKPMNYSDESMDEAIE 363 (651)
T ss_pred hHHHHHHHhhCCCCCCcEEEEEEEEE-eccchhhhcCCCcccHHHHHHHcChHHHHHHHHhcCCCCCCccCHHHHHHHHH
Confidence 999999999999899999999 9976 99999999999999999999999999999999988669999999999999888
Q ss_pred HHHHHHHHHHHHHhhCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhh-hcCChHHHHHHHHHH
Q 002136 635 FTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASY-DKYFFGDVGRETYDF 713 (961)
Q Consensus 635 ~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~-e~~~f~~A~~~i~~f 713 (961)
..++++|.+..+...+..... .....+...|+|++..++.+...|.++| ++|+++.|+..|++|
T Consensus 364 ~~~~l~n~~~rl~s~l~~~~~---------------~~~~~~~~~d~~Ll~~l~~~~~~v~~Am~Ddfnt~~Al~~L~eL 428 (651)
T PTZ00399 364 KDKVFFNFFANVKIKLRESEL---------------TSPQKWTQHDFELNELFEETKSAVHAALLDNFDTPEALQALQKL 428 (651)
T ss_pred HHHHHHHHHHHHHHHHhhccc---------------cccccCCHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 888898887666543321110 0001234578999999999999999999 789999999999999
Q ss_pred HHHhhhHHHHH
Q 002136 714 FWSDFADWYIE 724 (961)
Q Consensus 714 ~~~~~~n~Yle 724 (961)
+ ..+|+|++
T Consensus 429 v--~~~N~yi~ 437 (651)
T PTZ00399 429 I--SATNTYLN 437 (651)
T ss_pred H--HHHHHHHh
Confidence 8 56899996
No 48
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=100.00 E-value=1.1e-37 Score=361.51 Aligned_cols=357 Identities=20% Similarity=0.244 Sum_probs=253.8
Q ss_pred CCCCCCCCCCCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCcc
Q 002136 80 YFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRV 159 (961)
Q Consensus 80 ~f~~~~~~~~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~ 159 (961)
.|.|.. +++.+++++- |||+|.+||||+++++..|+++||+|++||+|.|++|+|++|.+|. +.++++|+++.
T Consensus 13 ~f~p~~-~~~v~~yvcg--ptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi----~~A~~~g~~~~ 85 (465)
T TIGR00435 13 EFEPLV-QGKVKMYVCG--PTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKII----KRARENGESVY 85 (465)
T ss_pred ccccCC-CCcceEEEec--CccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHH----HHHHHcCCCHH
Confidence 355433 2344455544 5888999999999999999999999999999999999999999854 44567798876
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCceEEcC-eeeecCCCCCcc
Q 002136 160 ELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGS-YMVNWSPNLQTA 238 (961)
Q Consensus 160 ~~~~~~f~~~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~-~~v~w~p~~~t~ 238 (961)
++ ++.+.+.+.+++++||+++|+-....| .|...+.++|.+|.++|++|... ..|+||+.|-.
T Consensus 86 e~------------a~~~~~~f~~dl~~LgI~~d~~~~raT---~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~~~- 149 (465)
T TIGR00435 86 EV------------SERFIEAYFEDMKALNVLPPDLEPRAT---EHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKFK- 149 (465)
T ss_pred HH------------HHHHHHHHHHHHHHhCCCCCcCCcccc---ccHHHHHHHHHHHHHCCCEEEecCCcEEEeccccc-
Confidence 44 478889999999999999995332333 68899999999999999999998 99999876521
Q ss_pred ccccccccccCCCeEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCchhhhhccCeeeccCCCCCeeeeeecCcc
Q 002136 239 VSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYV 318 (961)
Q Consensus 239 lsd~Ev~~~e~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V 318 (961)
.|..|.|..+..=. .|.. |
T Consensus 150 ----------------------------------------------------~yG~ls~~~~~~~~-~~~~--------~ 168 (465)
T TIGR00435 150 ----------------------------------------------------DYGKLSKQDLDQLE-AGAR--------V 168 (465)
T ss_pred ----------------------------------------------------hhccCCCCCHHHHh-cccc--------c
Confidence 11111110000000 0000 0
Q ss_pred ccCCCcceeEeCCCCChhHHHHHHHhCCCceeecCCCCcccccccccCCCchHHHHHHHHHHHHHcCCccccccccccCC
Q 002136 319 DKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVP 398 (961)
Q Consensus 319 ~~~~GTG~v~~~Pah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p 398 (961)
+.+. =-++|.||.++
T Consensus 169 ~~~~--------~K~~p~DF~Lw--------------------------------------------------------- 183 (465)
T TIGR00435 169 DVDE--------AKRNKLDFVLW--------------------------------------------------------- 183 (465)
T ss_pred Cccc--------ccCCCCCceee---------------------------------------------------------
Confidence 0000 01233344333
Q ss_pred cccCCCCceeeeeccceeeeccHHHHHHHHHHHcCCceeechhHHHHHHHHHhcCCCceeeeccCCCcccceEEEcCCcc
Q 002136 399 RSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEE 478 (961)
Q Consensus 399 ~~~r~~~~v~~~~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~pIP~~~~~~~~~ 478 (961)
.+.++ |+ ..| .-.||.--|-|++++.
T Consensus 184 ---k~~~~--------------------------~~-------------------~~w----~spwG~grpgWhiecs-- 209 (465)
T TIGR00435 184 ---KSSKE--------------------------GE-------------------PKW----DSPWGKGRPGWHIECS-- 209 (465)
T ss_pred ---CCCCC--------------------------CC-------------------CCC----cCCCCCCCCCcHhHHH--
Confidence 22211 01 112 2358988999998530
Q ss_pred cEEEecChHHHHHHHHhhcCCCcccccCCCceeeeecCCCccccccCCCCCChhHHhhcCCcceEeeeccccccHHHHHH
Q 002136 479 EYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMV 558 (961)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvldtWf~S~l~~~~~~~~p~~~~~~~~~~~P~d~~~~G~Dil~fw~~~~i 558 (961)
. +....+| .|.|++.+|.|++|.|+...+
T Consensus 210 --------------------------------------a-m~~~~lg------------~~~Dih~gG~Dl~fpHhene~ 238 (465)
T TIGR00435 210 --------------------------------------A-MNDKYLG------------DQIDIHGGGVDLIFPHHENEI 238 (465)
T ss_pred --------------------------------------H-HHHHhcC------------CCceeeccccccccchHHHHH
Confidence 0 0001122 257899999999999999999
Q ss_pred HHHhHhcCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHhCCCCCccccCHHHHHHHHHHHHH
Q 002136 559 MMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNK 638 (961)
Q Consensus 559 ~~~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~~~~~D~~f~~~~~~~~~~~~nk 638 (961)
+++.+++|+ ||.++++|+.+++.+|+|||||+||+|+|.|++++||+|++|||+++.++.++++|+++.+.+.++.+++
T Consensus 239 aqs~a~~g~-~~~~~~~h~g~v~~~g~KMSKS~GN~i~~~dll~~~~~dalR~~ll~~~~~~~l~fs~~~l~~a~~~~~r 317 (465)
T TIGR00435 239 AQSEAAFGK-QLAKYWMHNGFLMIDNEKMSKSLGNFFTVRDVLKNYDPEILRYFLLSVHYRSPLDFSEELLEAAKNALER 317 (465)
T ss_pred HHHHHhcCC-CCCcEEEEeeEEEecCccccccCCCcCCHHHHHHHCCHHHHHHHHHhCCCCCCCccCHHHHHHHHHHHHH
Confidence 999999885 6788888877777999999999999999999999999999999999887799999999999999999999
Q ss_pred HHHHHHHHHhhCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhh-hcCChHHHHHHHHHHH
Q 002136 639 LWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASY-DKYFFGDVGRETYDFF 714 (961)
Q Consensus 639 l~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~-e~~~f~~A~~~i~~f~ 714 (961)
|||+++++......... ..... ......+.+.+.++| +++++..|+..|++++
T Consensus 318 l~~~~~~~~~~~~~~~~----------------~~~~~-------~~~~~~~~~~f~~al~dDlnt~~a~~~l~~~~ 371 (465)
T TIGR00435 318 LYKALRVLDTTLAYSGN----------------QSLNK-------FPDEKEFEARFVEAMDDDLNTANALAVLFELA 371 (465)
T ss_pred HHHHHHHHHhhhccccc----------------ccccc-------chhHHHHHHHHHHHHhhccCHHHHHHHHHHHH
Confidence 99999887543211000 00000 011234556777777 5799999999999997
No 49
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.4e-37 Score=343.09 Aligned_cols=343 Identities=19% Similarity=0.168 Sum_probs=243.8
Q ss_pred CEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHH
Q 002136 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRV 170 (961)
Q Consensus 91 ~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~ 170 (961)
+++++-|.|| |.+||||+++++..|+++||+|++||+|.|++|+|+||.+|+. .++++|+++.++
T Consensus 11 ~~YvCGpTvY--~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~----~A~~~G~~~~e~--------- 75 (384)
T PRK12418 11 TMYVCGITPY--DATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLE----RAARDGVDWRDL--------- 75 (384)
T ss_pred EEEecCCCCC--CCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHH----HHHHcCCCHHHH---------
Confidence 5667666666 9999999999999999999999999999999999999999644 456779987654
Q ss_pred HHHHHHHHHHHHHHHHHhCC-ccC-CCCCccCCChhhHHHHHHHHHHHHhcCceEEcCe----eeecCCCCCcccccccc
Q 002136 171 WEWKEKYGGTITSQIKRLGA-SCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSY----MVNWSPNLQTAVSDLEV 244 (961)
Q Consensus 171 ~~~~~~~~~~i~~~l~~lG~-s~D-w~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~----~v~w~p~~~t~lsd~Ev 244 (961)
++++.+.+.+.|++||+ +.| +-| |++ +.+.++.++.+|.++|++|.... -|+++...
T Consensus 76 ---a~~~~~~f~~d~~~Lni~~~~~~~r---aTe--~i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~~--------- 138 (384)
T PRK12418 76 ---AEREIALFREDMEALRVLPPRDYVG---AVE--SIPEVVELVEKLLASGAAYVVDDEEYPDVYFSVDA--------- 138 (384)
T ss_pred ---HHHHHHHHHHHHHHhCCCCCCcccc---CCC--CHHHHHHHHHHHHHCCCEEEeCCCCCccEEEecCc---------
Confidence 47889999999999997 555 333 444 48899999999999999999887 57654321
Q ss_pred ccccCCCeEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCchhhhhccCeeeccCCCCCeeeeeecCccccCCCc
Q 002136 245 EYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGT 324 (961)
Q Consensus 245 ~~~e~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GT 324 (961)
.+.|..|.|.... ++.. ..|.
T Consensus 139 --------------------------------------------~~~YG~ls~~~~~-------~~~~--------~~~~ 159 (384)
T PRK12418 139 --------------------------------------------TPQFGYESGYDRA-------TMLE--------LFAE 159 (384)
T ss_pred --------------------------------------------hhhcccccCCCHH-------HHHh--------hhcc
Confidence 0011111110000 0000 0000
Q ss_pred ceeEe-CC-CCChhHHHHHHHhCCCceeecCCCCcccccccccCCCchHHHHHHHHHHHHHcCCccccccccccCCcccC
Q 002136 325 GVLKI-SP-GHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQR 402 (961)
Q Consensus 325 G~v~~-~P-ah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r 402 (961)
..+-. .+ -.+|.||.++|..
T Consensus 160 ~~~~~~~~~K~~p~DFaLWK~~---------------------------------------------------------- 181 (384)
T PRK12418 160 RGGDPDRPGKRDPLDALLWRAA---------------------------------------------------------- 181 (384)
T ss_pred cccCcccccCCCcccceeeccC----------------------------------------------------------
Confidence 00000 00 1233344333210
Q ss_pred CCCceeeeeccceeeeccHHHHHHHHHHHcCCceeechhHHHHHHHHHhcCCCceeeeccCCCcccceEEEcCCcccEEE
Q 002136 403 GGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIV 482 (961)
Q Consensus 403 ~~~~v~~~~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~ 482 (961)
++ +++ -| .-.||---|-|++++.
T Consensus 182 --~~--------------------------~~~-------------------~w----~spwG~GRPGWHiECs------ 204 (384)
T PRK12418 182 --RP--------------------------GEP-------------------SW----PSPFGPGRPGWHIECS------ 204 (384)
T ss_pred --CC--------------------------CCC-------------------cc----cCCCCCCCChhHHHHH------
Confidence 00 000 12 3468888899998640
Q ss_pred ecChHHHHHHHHhhcCCCcccccCCCceeeeecCCCccccccCCCCCChhHHhhcCCcceEeeeccccccHHHHHHHHHh
Q 002136 483 ARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGI 562 (961)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~dvldtWf~S~l~~~~~~~~p~~~~~~~~~~~P~d~~~~G~Dil~fw~~~~i~~~~ 562 (961)
.+....+| -|.|++.+|.|++|.|+..+++.+.
T Consensus 205 -----------------------------------am~~~~lg------------~~~DIH~GG~DL~FPHHeneiaq~~ 237 (384)
T PRK12418 205 -----------------------------------AIALNRLG------------SGFDIQGGGSDLIFPHHEFSAAHAE 237 (384)
T ss_pred -----------------------------------HHHHHHcC------------CCcccccCccccccchhHhHHHHHH
Confidence 01111122 2468999999999999999999999
Q ss_pred HhcCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhh-cChhHHHHHHHhCCCCCccccCHHHHHHHHHHHHHHHH
Q 002136 563 EFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE-FGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWN 641 (961)
Q Consensus 563 ~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~-yGaDalR~~L~~~~~~~D~~f~~~~~~~~~~~~nkl~N 641 (961)
+++|+.||.++++||.+++.+|+|||||+||+|+|.++++. ++++++|||++++.+.++++|+++.+++.++.+++++|
T Consensus 238 a~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~ell~~G~d~~~lR~~lls~~yr~~l~fs~e~l~~a~~~l~r~~~ 317 (384)
T PRK12418 238 AATGERRFARHYVHAGMIGLDGEKMSKSRGNLVFVSRLRAAGVDPAAIRLALLAGHYRADREWTDAVLAEAEARLARWRA 317 (384)
T ss_pred HhcCCCCcceEEEECCEECCCCCcccCcCCCcCCHHHHHhccCChhheeEEEeccCCCCCcccCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999997643 44449999999777799999999999999999999988
Q ss_pred HHHHHHhhCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhhh-cCChHHHHHHHHHHHHHhhhH
Q 002136 642 AGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYD-KYFFGDVGRETYDFFWSDFAD 720 (961)
Q Consensus 642 ~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e-~~~f~~A~~~i~~f~~~~~~n 720 (961)
++... . . . .+..+.+.+.++|+ ++++..|+..|++++ ...|
T Consensus 318 ~~~~~----~---~---------------------~--------~~~~~~~~f~~al~dDlnt~~a~~~l~~~~--~~~n 359 (384)
T PRK12418 318 AAALP----A---G---------------------P--------DAADVVARVRAALADDLDTPGALAAVDGWA--TDAL 359 (384)
T ss_pred HHhcc----c---c---------------------c--------hHHHHHHHHHHHHHhcCChHHHHHHHHHHH--HHHH
Confidence 75321 0 0 0 12334577888884 699999999999998 3467
Q ss_pred HHHH
Q 002136 721 WYIE 724 (961)
Q Consensus 721 ~Yle 724 (961)
.|+.
T Consensus 360 ~~~~ 363 (384)
T PRK12418 360 EGGG 363 (384)
T ss_pred hccC
Confidence 7753
No 50
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=100.00 E-value=8.8e-37 Score=341.75 Aligned_cols=341 Identities=19% Similarity=0.195 Sum_probs=245.5
Q ss_pred CCCCCCCCCCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccc
Q 002136 81 FKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVE 160 (961)
Q Consensus 81 f~~~~~~~~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~ 160 (961)
|.+ +++-+++++-|.|| +.+||||+++++..|+++||+|+.||+|.|++|+|+||.+|+. .++++|+++++
T Consensus 31 f~p---~~~v~~YvCGpTvY--~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~----~A~~~g~t~~e 101 (411)
T TIGR03447 31 VEP---GPEAGMYVCGITPY--DATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFE----RAERDGVDWRE 101 (411)
T ss_pred ccC---CCcceEEEeCCccC--CCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHH----HHHHcCCCHHH
Confidence 555 23456788888777 8999999999999999999999999999999999999999644 45677988765
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-cC-CCCCccCCChhhHHHHHHHHHHHHhcCceEEcCe----eeecCCC
Q 002136 161 LSRDEFTKRVWEWKEKYGGTITSQIKRLGAS-CD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSY----MVNWSPN 234 (961)
Q Consensus 161 ~~~~~f~~~~~~~~~~~~~~i~~~l~~lG~s-~D-w~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~----~v~w~p~ 234 (961)
+ +++|...+.+.|++||+. .| +-| |++. .+.+++++.+|+++|+||.... -|+++..
T Consensus 102 l------------a~~y~~~f~~d~~~Lni~~~d~~~R---aTe~--i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFdv~ 164 (411)
T TIGR03447 102 L------------GTSQIDLFREDMEALRVLPPRDYIG---AVES--IDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIE 164 (411)
T ss_pred H------------HHHHHHHHHHHHHHcCCCCCCcccC---CCCC--HHHHHHHHHHHHHCCCEEecCCCCcCcEEEecc
Confidence 4 478889999999999987 44 444 4444 7899999999999999998775 4655432
Q ss_pred CCccccccccccccCCCeEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCchhhhhccCeeeccCC--CCCeeee
Q 002136 235 LQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMT--YGRHVPI 312 (961)
Q Consensus 235 ~~t~lsd~Ev~~~e~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~y~~l~g~~~~~P~~--~~~~ipi 312 (961)
. .+.|..|.|.....=.. ..+.
T Consensus 165 ~-----------------------------------------------------~~~YG~Ls~~~~~~~~~~~~~~~--- 188 (411)
T TIGR03447 165 A-----------------------------------------------------TEQFGYESGYDRATMLELFAERG--- 188 (411)
T ss_pred c-----------------------------------------------------hhccccccCCCHHHHHhhhcccc---
Confidence 1 00121111111000000 0000
Q ss_pred eecCccccCCCcceeEeCC-CCChhHHHHHHHhCCCceeecCCCCcccccccccCCCchHHHHHHHHHHHHHcCCccccc
Q 002136 313 ISDKYVDKEFGTGVLKISP-GHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKE 391 (961)
Q Consensus 313 i~~~~V~~~~GTG~v~~~P-ah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~ 391 (961)
|+.+ .+ -.+|.||.+||+.+
T Consensus 189 -----~~~~--------~~~K~~p~DFaLWK~~~---------------------------------------------- 209 (411)
T TIGR03447 189 -----GDPD--------RPGKRDPLDALLWRAAR---------------------------------------------- 209 (411)
T ss_pred -----cCcc--------cccCCCCcccceeCCCC----------------------------------------------
Confidence 0000 00 23445555554210
Q ss_pred cccccCCcccCCCCceeeeeccceeeeccHHHHHHHHHHHcCCceeechhHHHHHHHHHhcCCCceeeeccCCCcccceE
Q 002136 392 PHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVW 471 (961)
Q Consensus 392 ~~~~~~p~~~r~~~~v~~~~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~pIP~~ 471 (961)
.+++ -| .-.||.--|-|
T Consensus 210 ----------------------------------------~~e~-------------------~w----~spwG~GRPGW 226 (411)
T TIGR03447 210 ----------------------------------------EGEP-------------------SW----DSPFGPGRPGW 226 (411)
T ss_pred ----------------------------------------CCCC-------------------Cc----cCCCCCCCChh
Confidence 0000 12 34688888999
Q ss_pred EEcCCcccEEEecChHHHHHHHHhhcCCCcccccCCCceeeeecCCCccccccCCCCCChhHHhhcCCcceEeeeccccc
Q 002136 472 YIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILF 551 (961)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvldtWf~S~l~~~~~~~~p~~~~~~~~~~~P~d~~~~G~Dil~ 551 (961)
++++. .+....+| -+.|++.+|.|++|
T Consensus 227 HiECs-----------------------------------------am~~~~lg------------~~~Dih~GG~DLif 253 (411)
T TIGR03447 227 HIECS-----------------------------------------AIATNRLG------------AGFDIQGGGSDLIF 253 (411)
T ss_pred HHHHH-----------------------------------------HHHHHHcC------------CceecccCcccccc
Confidence 98640 01111111 13589999999999
Q ss_pred cHHHHHHHHHhHhcCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhh-cChhHHHHHHHhCCCCCccccCHHHHH
Q 002136 552 FWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE-FGADALRFTISLGTAGQDLSLSIERLT 630 (961)
Q Consensus 552 fw~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~-yGaDalR~~L~~~~~~~D~~f~~~~~~ 630 (961)
.|....++.+.+++|+.||.++++|+..++.+|+|||||+||+|+|.++++. |++|++|||++++.+.++++|+++.++
T Consensus 254 pHheneiaq~~A~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~dl~~~g~dp~~lRl~lls~~Yr~pl~fs~e~l~ 333 (411)
T TIGR03447 254 PHHEFSAAHAEAATGVRRMARHYVHAGMIGLDGEKMSKSLGNLVFVSKLRAAGVDPAAIRLGLLAGHYRQDRDWTDAVLA 333 (411)
T ss_pred cchHhHHHHHHHhcCCCCcceEEEECCEECcCCCCccCcCCCCCCHHHHHhcCCCcccEEEEEecCCCCCCCccCHHHHH
Confidence 9999999999999999899999999998899999999999999999999886 899999999997777999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhh-hcCChHHHHHH
Q 002136 631 ANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASY-DKYFFGDVGRE 709 (961)
Q Consensus 631 ~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~-e~~~f~~A~~~ 709 (961)
+.++.++++++++... . . . .+..+...+.++| +++++..|+..
T Consensus 334 ~a~~~l~rl~~~~~~~----~---~---------------------~--------~~~~~~~~~~~al~dDln~p~a~~~ 377 (411)
T TIGR03447 334 EAEARLARWRAALAAT----D---A---------------------P--------DATDLIARLRQHLANDLDTPAALAA 377 (411)
T ss_pred HHHHHHHHHHHHHhhc----c---c---------------------c--------hHHHHHHHHHHHHHhcCChHHHHHH
Confidence 9999999988876311 0 0 0 1223445666777 57999999999
Q ss_pred HHHHH
Q 002136 710 TYDFF 714 (961)
Q Consensus 710 i~~f~ 714 (961)
+++++
T Consensus 378 l~~~~ 382 (411)
T TIGR03447 378 VDNWA 382 (411)
T ss_pred HHHHH
Confidence 99886
No 51
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.6e-35 Score=336.83 Aligned_cols=363 Identities=17% Similarity=0.168 Sum_probs=256.0
Q ss_pred EEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecC----------CCCCCCchHHHHHHHHHHHcCCCcccc
Q 002136 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLP----------GTDHAGIATQLVVEKMLAAEGIKRVEL 161 (961)
Q Consensus 92 f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~----------G~D~~Gl~~q~~vek~l~~~g~~~~~~ 161 (961)
.-+...=|+|++.+||||+++++..|+++||+|+.||+|.|+. |+|+||-+|. +.++++|+++.++
T Consensus 24 v~mYvCGpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii----~~A~~~g~~~~e~ 99 (490)
T PRK14536 24 VRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMV----KSAQEHGKSVLEI 99 (490)
T ss_pred eEEEeeCCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHH----HHHHHcCCCHHHH
Confidence 4444444999999999999999999999999999999999995 9999998864 3456779887654
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCceEEcCeeeecCCCCCccccc
Q 002136 162 SRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSD 241 (961)
Q Consensus 162 ~~~~f~~~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~w~p~~~t~lsd 241 (961)
++.|.+.+.+.|++||+..+ .++|..++|...++.+|.+|.++|++|.+...|++|+..-
T Consensus 100 ------------a~~~~~~f~~d~~~Lni~~~---~~~~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~~~----- 159 (490)
T PRK14536 100 ------------AAHYTAAFFRDTARLNIERP---SIVCNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRTF----- 159 (490)
T ss_pred ------------HHHHHHHHHHHHHHcCCCCC---ceecCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCCcc-----
Confidence 47889999999999999987 3446668999999999999999999999999999886320
Q ss_pred cccccccCCCeEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCchhhhhccCeeeccCCCCCeeeeeecCccccC
Q 002136 242 LEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKE 321 (961)
Q Consensus 242 ~Ev~~~e~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~ 321 (961)
+.|.+|.|..... +.
T Consensus 160 ------------------------------------------------~~YG~Ls~~~~~~-----------------l~ 174 (490)
T PRK14536 160 ------------------------------------------------PSYGSLASAAVED-----------------LQ 174 (490)
T ss_pred ------------------------------------------------cchhhhcCCCHHH-----------------hh
Confidence 1122221111000 00
Q ss_pred CCcceeEeCC-CCChhHHHHHHHhCCCceeecCCCCcccccccccCCCchHHHHHHHHHHHHHcCCccccccccccCCcc
Q 002136 322 FGTGVLKISP-GHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRS 400 (961)
Q Consensus 322 ~GTG~v~~~P-ah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~ 400 (961)
.|.. |-..+ -++|.||.+|+..
T Consensus 175 ~g~~-v~~~~~K~np~DFaLWK~~-------------------------------------------------------- 197 (490)
T PRK14536 175 AGAR-IEHDTNKRNPHDFVLWFTR-------------------------------------------------------- 197 (490)
T ss_pred cCCc-CCCCCCCCCchhchhcccc--------------------------------------------------------
Confidence 0000 00000 1233444433210
Q ss_pred cCCCCceeeeeccceeeeccHHHHHHHHHHHcCCceeechhHHHHHHHHHhcCCCceeeeccCCCcccceEEEcCCcccE
Q 002136 401 QRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEY 480 (961)
Q Consensus 401 ~r~~~~v~~~~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~pIP~~~~~~~~~~~ 480 (961)
..+.+..+++...||...|-|++++.
T Consensus 198 --------------------------------------------------~~~~~~~~~W~SpWG~GRPGWHIECs---- 223 (490)
T PRK14536 198 --------------------------------------------------SKFENHALTWDSPWGRGYPGWHIECS---- 223 (490)
T ss_pred --------------------------------------------------cCCCCCCCcccCCCCCCCCChHHHHH----
Confidence 01122344567789999999998530
Q ss_pred EEecChHHHHHHHHhhcCCCcccccCCCceeeeecCCCccccccCCCCCChhHHhhcCCcceEeeeccccccHHHHHHHH
Q 002136 481 IVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMM 560 (961)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dvldtWf~S~l~~~~~~~~p~~~~~~~~~~~P~d~~~~G~Dil~fw~~~~i~~ 560 (961)
+ +....+| + ..|+|.+|.|++|+|.-..+++
T Consensus 224 ------------------------------------a-Ms~~~lg---~---------~~DIH~GG~DliFPHHeneiAq 254 (490)
T PRK14536 224 ------------------------------------A-MSMKYLG---E---------QCDIHIGGVDHIRVHHTNEIAQ 254 (490)
T ss_pred ------------------------------------H-HHHHHcC---C---------ceeEEeccccCCCcchhhHHHH
Confidence 0 1001111 1 2589999999999999999999
Q ss_pred HhHhcCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhh-cChhHHHHHHHhCCCCCccccCHHHHHHHHHHHHHH
Q 002136 561 GIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE-FGADALRFTISLGTAGQDLSLSIERLTANKAFTNKL 639 (961)
Q Consensus 561 ~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~-yGaDalR~~L~~~~~~~D~~f~~~~~~~~~~~~nkl 639 (961)
+.+++|+ ||.++++|+..+..+|+|||||+||+|++.|++++ |+++++||++++..+.++++|+++.+.+..+-+.+|
T Consensus 255 s~a~~g~-~~~~~w~h~g~l~~~g~KMSKSlGN~itl~dll~~g~~~~alR~~lls~~yr~~l~Fs~e~l~~a~~~~~rl 333 (490)
T PRK14536 255 CEAATGK-PWVRYWLHHEFLLMNKGKMSKSAGQFLTLSSLQEKGFQPLDYRFFLLGGHYRSQLAFSWEALKTAKAARRSL 333 (490)
T ss_pred HHHhcCC-CcceEEEEcCEEeecCccccccCCCcccHHHHHhcCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 9888886 88999999998889999999999999999999998 999999999999888999999999999999888888
Q ss_pred HHHHHHHHhhCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhh-hcCChHHHHHHHHHHH
Q 002136 640 WNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASY-DKYFFGDVGRETYDFF 714 (961)
Q Consensus 640 ~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~-e~~~f~~A~~~i~~f~ 714 (961)
.|++..+............ + ....... ...+.-....+..+...+.++| +++++..|+..|++++
T Consensus 334 ~~~~~~~~~~~~~~~~~~~-------~--~~~~~~~-~~~~~~~~~~~~~~~~~f~~al~dDlntp~Al~~l~~~~ 399 (490)
T PRK14536 334 VRRVARVVDAARATTGSVR-------G--TLAECAA-ERVAESRASESELLLTDFRAALEDDFSTPKALSELQKLV 399 (490)
T ss_pred HHHHHHHHHhhhccccccc-------c--ccccccc-ccccchhhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 8876554322110000000 0 0000000 0000001123456678888888 5799999999999987
No 52
>PLN02946 cysteine-tRNA ligase
Probab=100.00 E-value=6.7e-34 Score=329.20 Aligned_cols=354 Identities=16% Similarity=0.155 Sum_probs=254.6
Q ss_pred CCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHH
Q 002136 99 PNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYG 178 (961)
Q Consensus 99 Py~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~ 178 (961)
|+|.|.+||||+++++..|+++||+|+.||+|.|+.|+|+||-+|.. .++++|+++.++ +++|.
T Consensus 88 pTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~----~A~~~g~~~~el------------a~~y~ 151 (557)
T PLN02946 88 VTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIA----RANELGEDPISL------------SRRYC 151 (557)
T ss_pred CccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHH----HHHHcCCCHHHH------------HHHHH
Confidence 89999999999999999999999999999999999999999999644 456678887654 47889
Q ss_pred HHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCceEEcCeeeecCCCCCccccccccccccCCCeEEEEEE
Q 002136 179 GTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKY 258 (961)
Q Consensus 179 ~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~w~p~~~t~lsd~Ev~~~e~~~~~~~~~~ 258 (961)
+.+.+.|++||+.-+. +.|...+|...++.++.+|.++|++|.+...|++|...
T Consensus 152 ~~f~~d~~~LnI~~p~---~~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~~----------------------- 205 (557)
T PLN02946 152 EEFLSDMAYLHCLPPS---VEPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDK----------------------- 205 (557)
T ss_pred HHHHHHHHHCCCCCCC---eecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecCc-----------------------
Confidence 9999999999998443 34777799999999999999999999999999887541
Q ss_pred EecCCCeeEEEEecCCCccCCCcEEEECCCCchhhhhccCeeeccCCCCCeeeeeecCccccCCCcceeEeCCCCChhHH
Q 002136 259 RVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDY 338 (961)
Q Consensus 259 ~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~v~~~Pah~~~D~ 338 (961)
.+.|..|.|..+..=. .|.. |+.+ .=-.+|.||
T Consensus 206 ------------------------------f~~YG~Ls~~~l~~l~-~g~r--------v~~~--------~~K~np~DF 238 (557)
T PLN02946 206 ------------------------------FPEYGKLSGRKLEDNR-AGER--------VAVD--------SRKKNPADF 238 (557)
T ss_pred ------------------------------chhhhhcCCCChhHhh-cCCC--------CCcc--------cccCCcccc
Confidence 1123333322211000 0000 0000 012355566
Q ss_pred HHHHHhCCCceeecCCCCcccccccccCCCchHHHHHHHHHHHHHcCCccccccccccCCcccCCCCceeeeeccceeee
Q 002136 339 LLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVT 418 (961)
Q Consensus 339 ~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~qwF~~ 418 (961)
.+||+.+
T Consensus 239 aLWK~~k------------------------------------------------------------------------- 245 (557)
T PLN02946 239 ALWKAAK------------------------------------------------------------------------- 245 (557)
T ss_pred ceeccCC-------------------------------------------------------------------------
Confidence 6554320
Q ss_pred ccHHHHHHHHHHHcCCceeechhHHHHHHHHHhcCCCceeeeccCCCcccceEEEcCCcccEEEecChHHHHHHHHhhcC
Q 002136 419 MEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYG 498 (961)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (961)
.|++ -| .-.||.--|-|++++.
T Consensus 246 -------------~ge~-------------------~W----~SPWG~GRPGWHIECS---------------------- 267 (557)
T PLN02946 246 -------------EGEP-------------------FW----DSPWGPGRPGWHIECS---------------------- 267 (557)
T ss_pred -------------CCCC-------------------Cc----cCCCCCCCCcHHHHHH----------------------
Confidence 0000 12 3468988999998640
Q ss_pred CCcccccCCCceeeeecCCCccccccCCCCCChhHHhhcCCcceEeeeccccccHHHHHHHHHhHhcCCCCceEEEEe-c
Q 002136 499 KNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLH-G 577 (961)
Q Consensus 499 ~~~~~~~~~dvldtWf~S~l~~~~~~~~p~~~~~~~~~~~P~d~~~~G~Dil~fw~~~~i~~~~~l~~~~Pfk~v~~h-g 577 (961)
.+....+| .+.|+|.+|.|++|.|.-..++.+.+..|+ ||-+.++| |
T Consensus 268 -------------------aMs~~~lG------------~~~DIH~GG~DL~FPHHENEiAQsea~~g~-~~a~yW~H~G 315 (557)
T PLN02946 268 -------------------AMSAAYLG------------HSFDIHGGGMDLVFPHHENEIAQSCAACCD-SNISYWIHNG 315 (557)
T ss_pred -------------------HHHHHHcC------------CCeeEeccccccCCCcccchHHHHHHHhCC-CCCceeeEee
Confidence 01111122 236899999999999999999998887775 55656555 7
Q ss_pred eEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHhCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchh
Q 002136 578 LIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDIS 657 (961)
Q Consensus 578 ~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~~~~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~ 657 (961)
||. .+|+|||||+||+|++.|++++||+|++||||++..+.++++|+++.+....+-+.+++++++.+...+.....
T Consensus 316 ~v~-~~G~KMSKSlGN~itl~dll~~y~~dalR~~lLs~hyr~~l~fs~e~L~~a~~~l~~l~~~~~~~~~~l~~~~~-- 392 (557)
T PLN02946 316 FVT-VDSEKMSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYRSPINYSDVQLESASERIFYIYQTLHDCEESLQQHDS-- 392 (557)
T ss_pred EEE-eCCCCcCCcCCCcCCHHHHHHhcCccceeeeeeccCCCCCcEecHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc--
Confidence 887 99999999999999999999999999999999998789999999999999888888888887665432211000
Q ss_pred hHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhh-hcCChHHHHHHHHHHHHHhhhHHHHH
Q 002136 658 RWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASY-DKYFFGDVGRETYDFFWSDFADWYIE 724 (961)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~-e~~~f~~A~~~i~~f~~~~~~n~Yle 724 (961)
. ....+ .+..+...+..+.+.+.++| +++++..|+..|++++ ...|.++.
T Consensus 393 ------------~--~~~~~-~~~~~~~~~~~~~~~f~~Al~DDlntp~Al~~l~~~v--k~~N~~~~ 443 (557)
T PLN02946 393 ------------T--FEKDS-VPPDTLNCINKFHDEFVTSMSDDLHTPVALAALSEPL--KTINDLLH 443 (557)
T ss_pred ------------c--ccccc-cchhhHHHHHHHHHHHHHHHHhccChHHHHHHHHHHH--HHHHHHhh
Confidence 0 00000 11112234556778888888 5799999999999998 34666664
No 53
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.8e-33 Score=325.84 Aligned_cols=341 Identities=20% Similarity=0.243 Sum_probs=248.1
Q ss_pred EEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHH
Q 002136 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVW 171 (961)
Q Consensus 92 f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~ 171 (961)
.-+...=|+|.+.+||||+++++..|+++||+|+.||+|.|+.|+|+||-+|.. .+++.|+++.++
T Consensus 249 V~mYvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~----~A~e~G~sp~el---------- 314 (699)
T PRK14535 249 VRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIA----RAAENGETIGEL---------- 314 (699)
T ss_pred eEEEecCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHH----HHHHcCCCHHHH----------
Confidence 333333489999999999999999999999999999999999999999999643 456779887654
Q ss_pred HHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCceEEcC-eeeecCCCCCccccccccccccCC
Q 002136 172 EWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGS-YMVNWSPNLQTAVSDLEVEYSEEP 250 (961)
Q Consensus 172 ~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~-~~v~w~p~~~t~lsd~Ev~~~e~~ 250 (961)
++.|.+.+.+.|++||++.| .+.|...+|...++.++.+|.++|++|.+. .-|++|..+-
T Consensus 315 --a~~y~~~F~~d~~~LnI~~p---~~~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~f-------------- 375 (699)
T PRK14535 315 --TARFIQAMHEDADALGVLRP---DIEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREF-------------- 375 (699)
T ss_pred --HHHHHHHHHHHHHHcCCCCC---cEeeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEecccc--------------
Confidence 47888999999999999988 245667799999999999999999999874 4687775421
Q ss_pred CeEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCchhhhhccCeeeccCCCCCeeeeeecCccccCCCcceeEeC
Q 002136 251 GTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKIS 330 (961)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~v~~~ 330 (961)
+.|..|.|.....=. .|. -|+.+ .
T Consensus 376 ---------------------------------------~~YG~LS~~~~~~l~-~g~--------rve~d--------~ 399 (699)
T PRK14535 376 ---------------------------------------AAYGQLSGKSLDDLR-AGE--------RVEVD--------G 399 (699)
T ss_pred ---------------------------------------cccccccCCChHHhc-CCC--------ccccc--------c
Confidence 112222221110000 000 01100 0
Q ss_pred CCCChhHHHHHHHhCCCceeecCCCCcccccccccCCCchHHHHHHHHHHHHHcCCccccccccccCCcccCCCCceeee
Q 002136 331 PGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPL 410 (961)
Q Consensus 331 Pah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~ 410 (961)
=-.+|.||.+||+.+ .
T Consensus 400 ~Krnp~DFaLWK~sk---------~------------------------------------------------------- 415 (699)
T PRK14535 400 FKRDPLDFVLWKAAK---------A------------------------------------------------------- 415 (699)
T ss_pred ccCCccccceeccCC---------C-------------------------------------------------------
Confidence 134556666664320 0
Q ss_pred eccceeeeccHHHHHHHHHHHcCCceeechhHHHHHHHHHhcCCCceeeeccCCCcccceEEEcCCcccEEEecChHHHH
Q 002136 411 VSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEAL 490 (961)
Q Consensus 411 ~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~ 490 (961)
|+ .-| .-.||---|-|++++.
T Consensus 416 ----------------------Ge-------------------p~W----~SPWG~GRPGWHIECS-------------- 436 (699)
T PRK14535 416 ----------------------GE-------------------PAW----ESPWGNGRPGWHIECS-------------- 436 (699)
T ss_pred ----------------------CC-------------------CCc----cCCCCCCCCchHHHHH--------------
Confidence 00 013 3468888899998640
Q ss_pred HHHHhhcCCCcccccCCCceeeeecCCCccccccCCCCCChhHHhhcCCcceEeeeccccccHHHHHHHHHhHhcCCC--
Q 002136 491 EKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSV-- 568 (961)
Q Consensus 491 ~~~~~~~~~~~~~~~~~dvldtWf~S~l~~~~~~~~p~~~~~~~~~~~P~d~~~~G~Dil~fw~~~~i~~~~~l~~~~-- 568 (961)
.+....+| -+.|+|.+|.|++|.|.-.-++.+.+.+|+.
T Consensus 437 ---------------------------AMs~~~LG------------~~~DIHgGG~DLiFPHHENEiAQseA~~g~~~~ 477 (699)
T PRK14535 437 ---------------------------AMSENLFG------------DTFDIHGGGADLQFPHHENEIAQSVGATGHTCG 477 (699)
T ss_pred ---------------------------HHHHHHcC------------CcceeECCccccCCCCCccHHHHHHHhhCCCcc
Confidence 01111122 1358999999999999999999998887762
Q ss_pred -------------CceEEEEe-ceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHhCCCCCccccCHHHHHHHHH
Q 002136 569 -------------PFSHVYLH-GLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKA 634 (961)
Q Consensus 569 -------------Pfk~v~~h-g~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~~~~~D~~f~~~~~~~~~~ 634 (961)
||.+.++| |||+ .+|+|||||+||+|+|.+++++||+|++|||++++.+.++++|+++.+++.++
T Consensus 478 ~~~~~~~~~~~~~~~aryWmHnG~V~-vdGeKMSKSLGN~it~~dlLe~ygpdalRl~lLsshYRspL~fS~e~Le~Ak~ 556 (699)
T PRK14535 478 HHHAQTHHGQSIASHVKYWLHNGFIR-VDGEKMSKSLGNFFTIREVLKQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKG 556 (699)
T ss_pred cccccccccccccccccEEEECCeEe-eCCCccCCCCCCcCCHHHHHHhCCHHHHHHHHHcCCCCCCCCcCHHHHHHHHH
Confidence 58888887 5555 99999999999999999999999999999999997779999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhh-hcCChHHHHHHHHHH
Q 002136 635 FTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASY-DKYFFGDVGRETYDF 713 (961)
Q Consensus 635 ~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~-e~~~f~~A~~~i~~f 713 (961)
.+++++++++-+.. . .. . ....+..+.+.+.++| +.+++..|+..|+++
T Consensus 557 ~l~Rl~~~l~~~~~-~---~~-------------------~-------~~~~l~~~~~~f~~AL~DDlntp~Ala~L~~l 606 (699)
T PRK14535 557 ALTRLYTTLKNTPA-A---EF-------------------M-------LSENVNDYTRRFYAAMNDDFGTVEAVAVLFEL 606 (699)
T ss_pred HHHHHHHHHHhhhh-c---cc-------------------h-------hhhhHHHHHHHHHHHHhhccChHHHHHHHHHH
Confidence 99999987643210 0 00 0 0113345667788888 579999999999998
Q ss_pred H
Q 002136 714 F 714 (961)
Q Consensus 714 ~ 714 (961)
+
T Consensus 607 v 607 (699)
T PRK14535 607 A 607 (699)
T ss_pred H
Confidence 7
No 54
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.2e-32 Score=312.11 Aligned_cols=357 Identities=16% Similarity=0.165 Sum_probs=249.9
Q ss_pred EEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeee---------cCCC-CCCCchHHHHHHHHHHHcCCCcccc
Q 002136 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLW---------LPGT-DHAGIATQLVVEKMLAAEGIKRVEL 161 (961)
Q Consensus 92 f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~---------~~G~-D~~Gl~~q~~vek~l~~~g~~~~~~ 161 (961)
.-+...=|+|...+||||+++++..|+++||+|++||+|.| ++|+ |+||-+| .+.++++|+++.++
T Consensus 22 v~mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKI----i~~A~~~g~~~~e~ 97 (481)
T PRK14534 22 VKVYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKV----VKAARERGLTVYEI 97 (481)
T ss_pred eEEEeCCCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHH----HHHHHHcCCCHHHH
Confidence 34444448999999999999999999999999999999999 7999 6666664 44456789887654
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCceEEcCeeeecCCCCCccccc
Q 002136 162 SRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSD 241 (961)
Q Consensus 162 ~~~~f~~~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~w~p~~~t~lsd 241 (961)
+++|.+.+.+.+++||+..|- +....++|...++.++.+|.++|++|.....|++|+.+-
T Consensus 98 ------------a~~~~~~f~~d~~~Lni~~~~---~~p~atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~~----- 157 (481)
T PRK14534 98 ------------SRFFTEAFFDDCKKLNIVYPD---KVLVASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSCF----- 157 (481)
T ss_pred ------------HHHHHHHHHHHHHHcCCCCCc---eecCccchHHHHHHHHHHHHHCCCEEEECCeEEEecccc-----
Confidence 478899999999999999882 222357999999999999999999999999998887531
Q ss_pred cccccccCCCeEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCchhhhhccCeeec-cCCCCCeeeeeecCcccc
Q 002136 242 LEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIV-PMTYGRHVPIISDKYVDK 320 (961)
Q Consensus 242 ~Ev~~~e~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~y~~l~g~~~~~-P~~~~~~ipii~~~~V~~ 320 (961)
+.|..|.|..... +-
T Consensus 158 ------------------------------------------------~~YG~ls~~~l~~l~~---------------- 173 (481)
T PRK14534 158 ------------------------------------------------KSYGQMAGINLNDFKD---------------- 173 (481)
T ss_pred ------------------------------------------------cchhhhcCCCHHHHhh----------------
Confidence 1122222211100 00
Q ss_pred CCCcceeEeCC-CCChhHHHHHHHhCCCceeecCCCCcccccccccCCCchHHHHHHHHHHHHHcCCccccccccccCCc
Q 002136 321 EFGTGVLKISP-GHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPR 399 (961)
Q Consensus 321 ~~GTG~v~~~P-ah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~ 399 (961)
..|++ |...+ -.+|.||.+++..
T Consensus 174 ~~~~~-v~~~~~K~np~DFaLWK~~------------------------------------------------------- 197 (481)
T PRK14534 174 MSVSR-VEIDKSKRNKSDFVLWFTN------------------------------------------------------- 197 (481)
T ss_pred hccCc-CCcccCCCCcccchhcCcC-------------------------------------------------------
Confidence 00000 00000 1122222222100
Q ss_pred ccCCCCceeeeeccceeeeccHHHHHHHHHHHcCCceeechhHHHHHHHHHhcCCCceeeeccCCCcccceEEEcCCccc
Q 002136 400 SQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEE 479 (961)
Q Consensus 400 ~~r~~~~v~~~~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~pIP~~~~~~~~~~ 479 (961)
..+++..+++...||.--|-|++++.
T Consensus 198 ---------------------------------------------------~~~~~~~~~w~spWG~GrPgWHiECs--- 223 (481)
T PRK14534 198 ---------------------------------------------------SKFKDQEMKWDSPWGFGYPSWHLECA--- 223 (481)
T ss_pred ---------------------------------------------------CcCCCCCCeecCCCCCcCCcHHHHHH---
Confidence 12355667888899999999998530
Q ss_pred EEEecChHHHHHHHHhhcCCCcccccCCCceeeeecCCCccccccCCCCCChhHHhhcCCcceEeeeccccccHHHHHHH
Q 002136 480 YIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVM 559 (961)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvldtWf~S~l~~~~~~~~p~~~~~~~~~~~P~d~~~~G~Dil~fw~~~~i~ 559 (961)
. +....+| -..|+|.+|.|++|+|.-..++
T Consensus 224 -------------------------------------a-m~~~~lg------------~~~DIH~GG~DliFPHHene~A 253 (481)
T PRK14534 224 -------------------------------------A-MNLEYFK------------STLDIHLGGVDHIGVHHINEIA 253 (481)
T ss_pred -------------------------------------H-HHHHHcC------------CcceEEecccccCCCcchhHHH
Confidence 0 0000111 1258999999999999999999
Q ss_pred HHhHhcCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhh-cChhHHHHHHHhCCCCCccccCHHHHHHHHHHHHH
Q 002136 560 MGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE-FGADALRFTISLGTAGQDLSLSIERLTANKAFTNK 638 (961)
Q Consensus 560 ~~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~-yGaDalR~~L~~~~~~~D~~f~~~~~~~~~~~~nk 638 (961)
++.+.+|+ ||-++++|+-.+..+|+|||||+||+|++.|++++ |+++++||++++..+.++++||++.+++.++-+++
T Consensus 254 qs~a~~g~-~~~~~W~H~g~l~~~g~KMSKSlGN~i~l~dll~~~~~~~alR~~lls~~yr~~l~Fs~e~l~~a~~~~~~ 332 (481)
T PRK14534 254 IAECYLNK-KWCDMFVHGEFLIMEYEKMSKSNNNFITIKDLEDQGFSPLDFRYFCLTAHYRTQLKFTFNNLKACKIAREN 332 (481)
T ss_pred HHhhhcCC-CcceEEEEecEEEecCceecccCCCcccHHHHHhcCCChhHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHH
Confidence 99888776 66778877755558999999999999999999997 99999999999988899999999999999999999
Q ss_pred HHHHHHHHHhhCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhh-hcCChHHHHHHHHHHH
Q 002136 639 LWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASY-DKYFFGDVGRETYDFF 714 (961)
Q Consensus 639 l~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~-e~~~f~~A~~~i~~f~ 714 (961)
+++.++.+...+..... .. .. .. . +.........+.+.+.++| +.+++..|+..|++++
T Consensus 333 ~~~~~~~~~~~~~~~~~-~~----------~~---~~-~--~~~~~~~~~~~~~~f~~Al~DDlNtp~Al~~l~~~~ 392 (481)
T PRK14534 333 MLNKLTYFYSSLDQFDL-NL----------LN---KD-L--ENIEFSLEKEYYDSFLEKIAFDLNIPQGLALLWDII 392 (481)
T ss_pred HHHHHHHHHHhhhhccc-cc----------cc---cc-c--ccchhhhHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 99887655333211000 00 00 00 0 0000001234456778888 5799999999999987
No 55
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=99.98 E-value=2.6e-30 Score=305.17 Aligned_cols=202 Identities=21% Similarity=0.245 Sum_probs=136.6
Q ss_pred ceEeeeccccccHHHHHHHHHhHhcCCCCce-EEEEe---ceEEcCCCccccccCCCccCchhhhhh-cCh---------
Q 002136 541 TMLETGHDILFFWVARMVMMGIEFTGSVPFS-HVYLH---GLIRDSQGRKMSKTLGNVIDPIDTIKE-FGA--------- 606 (961)
Q Consensus 541 d~~~~G~Dil~fw~~~~i~~~~~l~~~~Pfk-~v~~h---g~v~d~~G~KMSKS~GNvI~p~dii~~-yGa--------- 606 (961)
-+++.|.|+. .++.++.. .+...|..|.. +++.| |+|++.+|+|||||+||+|+|.|++++ +|+
T Consensus 275 ~i~V~g~~q~-~hf~~~~~-~~~~lg~~~~~~~~~~h~~~glv~~~~g~KMSkR~Gn~i~l~dll~~a~g~~~~~~~~~~ 352 (507)
T PRK01611 275 VIYVVGADHH-GHFKRLKA-ALKALGYDPDALEVLLHQMVGLVRGGEGVKMSTRAGNVVTLDDLLDEAVGRARELIEEKE 352 (507)
T ss_pred EEEEECCChH-HHHHHHHH-HHHHcCCCcccceEEEEEEEEeeECCCCCcccCCCCceeEHHHHHHHHHHHHHHHHHhhh
Confidence 3567777754 34444433 33445555543 56666 899999999999999999999999999 999
Q ss_pred -------hHHHHHHHhCCCCCccccCHHHHHHHHH--HHHHHHHHHHHH--HhhCCCCCchhhHHHHHhhccchhhhhcC
Q 002136 607 -------DALRFTISLGTAGQDLSLSIERLTANKA--FTNKLWNAGKFI--LQNLPSQNDISRWEILLAYKFDEEECLCK 675 (961)
Q Consensus 607 -------DalR~~L~~~~~~~D~~f~~~~~~~~~~--~~nkl~N~~rf~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (961)
||+||++++..+++|++||++.+.+... ..-..++.+|.. +........ ..... ..
T Consensus 353 ~a~~vgidAiR~~~L~~~~~~~~~Fd~~~~~~~~~~~~~yvqYa~aR~~sil~k~~~~~~------------~~~~~-~l 419 (507)
T PRK01611 353 IAEAVGIDAVRYFDLSRSRDKDLDFDLDLALSFEGNNPPYVQYAHARICSILRKAAEAGI------------DLLLA-LL 419 (507)
T ss_pred hhhhhccceeEehhhhcCCCCCCccCHHHHHhhcCCCcHHHHHHHHHHHHHHHhhhccCc------------ccccc-cc
Confidence 9999999988779999999999775321 111122222211 111100000 00000 11
Q ss_pred CCchhHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhhHHHHHHhhhhhccCCCh---HHHHHHHHHHHHHHHH
Q 002136 676 APLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYD---SDAIIAQAVLLYIFEN 752 (961)
Q Consensus 676 ~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~i~~f~~~~~~n~Yle~~K~~l~~~~~~---~~~~~~~~~l~~vl~~ 752 (961)
.++.|+|++++|..+...+.+++++|+++.+++.+++|+ +.|++||=. . + +. .+.+ ..|.........+|..
T Consensus 420 ~~~~e~~Ll~~L~~~~~~v~~a~~~~~p~~l~~yl~~la-~~f~~fY~~-~-~-l~-~~~~~~~~~Rl~L~~a~~~vl~~ 494 (507)
T PRK01611 420 TEEEEKELIKKLAEFPEVVESAAEELEPHRIANYLYELA-GAFHSFYNR-V-L-LK-DEEEELRNARLALVKATAQVLKN 494 (507)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH-HHHHHHHHH-C-C-CC-CChHHHHHHHHHHHHHHHHHHHH
Confidence 146799999999999999999999999999999999998 799999932 2 2 32 2122 2344555556677888
Q ss_pred HHHHhCCCch
Q 002136 753 ILKLLHPFMP 762 (961)
Q Consensus 753 ~l~LL~Pf~P 762 (961)
.+.||.-=.|
T Consensus 495 ~l~lLgi~~~ 504 (507)
T PRK01611 495 GLDLLGISAP 504 (507)
T ss_pred HHHhcCCCcc
Confidence 8888864333
No 56
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.97 E-value=1.4e-31 Score=278.66 Aligned_cols=86 Identities=28% Similarity=0.413 Sum_probs=81.2
Q ss_pred CcceEeeeccccccHHHHHHHHHhHhcCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHhCCC
Q 002136 539 PTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA 618 (961)
Q Consensus 539 P~d~~~~G~Dil~fw~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~~~ 618 (961)
|.|++.+|.|++|.|..++++++.++.|+ ||.++++|+.+++.+|+|||||+||+|+|.|++++||+|++|||+++..+
T Consensus 128 ~~dih~~G~Dl~fpH~~~~~a~~~a~~g~-~~~~~~~h~~~v~~~g~KMSKs~Gn~v~~~dll~~~~~da~R~~~l~~~~ 206 (213)
T cd00672 128 TFDIHGGGVDLIFPHHENEIAQSEAATGK-PFARYWLHTGHLTIDGEKMSKSLGNFITVRDALKKYDPEVLRLALLSSHY 206 (213)
T ss_pred CccEEeecCCCCcChHHHHHHHHHHHhCC-CCCcEEEEEEEEeccCcchhhcCCCccCHHHHHHHcCHHHHHHHHHhCCc
Confidence 46899999999999999999999999998 89999999888889999999999999999999999999999999999888
Q ss_pred CCccccC
Q 002136 619 GQDLSLS 625 (961)
Q Consensus 619 ~~D~~f~ 625 (961)
.++++||
T Consensus 207 ~~~l~f~ 213 (213)
T cd00672 207 RSPLDFS 213 (213)
T ss_pred CCCCCCC
Confidence 8898886
No 57
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.96 E-value=2.3e-28 Score=270.71 Aligned_cols=125 Identities=15% Similarity=0.220 Sum_probs=99.0
Q ss_pred CCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCC--------CchHHHHHHHHHHHcCCCccc
Q 002136 89 SDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHA--------GIATQLVVEKMLAAEGIKRVE 160 (961)
Q Consensus 89 ~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~--------Gl~~q~~vek~l~~~g~~~~~ 160 (961)
+++|+|++|+ +|||.+||||++.++..|+++||+||+|++|.|++|+|+| |+|.+ ++ +..|.+...
T Consensus 18 ~~~~~v~tgi-~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~--~~---~~~G~pi~~ 91 (353)
T cd00674 18 KEKYVVASGI-SPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPES--YE---QYIGMPLSS 91 (353)
T ss_pred CCeEEEecCC-CCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhH--HH---HhcCccchh
Confidence 3569999997 5999999999999999999999999999999999999999 46543 22 334766544
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCceE
Q 002136 161 LSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIY 223 (961)
Q Consensus 161 ~~~~~f~~~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy 223 (961)
+.. .| ..|.+|++.+...+++.|++||+++|+-+. |-.....+..+.++..|.+.+.|.
T Consensus 92 ip~-p~-g~~~~~~d~~~~~f~~~l~~lgi~~d~~~~--T~~y~~g~~~~~i~~~L~~~~~I~ 150 (353)
T cd00674 92 VPD-PF-GCCESYAEHFERPFEESLEKLGIEVEFISQ--SQMYKSGLYDENILIALEKRDEIM 150 (353)
T ss_pred chh-hc-CCCHHHHHHHHHHHHHHHHHcCCeeeeeec--CCchhhchHHHHHHHHHHHCChHH
Confidence 432 22 234578899999999999999999995441 444444588999999999999883
No 58
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=2.9e-28 Score=271.72 Aligned_cols=343 Identities=22% Similarity=0.303 Sum_probs=247.2
Q ss_pred EEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHH
Q 002136 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVW 171 (961)
Q Consensus 92 f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~ 171 (961)
.-+..-=|+|....|||||++++.-|++.||.+..||.|.|+.-+-+ |.-++-+.+.+.|.+..
T Consensus 23 V~mYvCGpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTD----IDDKIi~rA~~~g~~~~------------ 86 (464)
T COG0215 23 VKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITD----IDDKIINRAREEGLSIR------------ 86 (464)
T ss_pred EEEEecCCccCCccccccCcceehHHHHHHHHHHhCCeEEEEecccc----ccHHHHHHHHHhCCCHH------------
Confidence 44444449999999999999999999999999999999999866544 23345566777887654
Q ss_pred HHHHHHHHHHHHHHHHhCCc-cCCCCCccCCChhhHHHHHHHHHHHHhcCceEEc-CeeeecCCCCCccccccccccccC
Q 002136 172 EWKEKYGGTITSQIKRLGAS-CDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG-SYMVNWSPNLQTAVSDLEVEYSEE 249 (961)
Q Consensus 172 ~~~~~~~~~i~~~l~~lG~s-~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~-~~~v~w~p~~~t~lsd~Ev~~~e~ 249 (961)
++++.|+..+.+++..||+. .|. .+..| +|...+.++..+|.++|+.|.. ...|+++...
T Consensus 87 ev~~~~i~~f~~D~~aL~v~~p~~-~PraT---e~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~~-------------- 148 (464)
T COG0215 87 EVAERYIAAFFEDMDALNVLPPDI-EPRAT---EHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSK-------------- 148 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcc-cCcHh---hCHHHHHHHHHHHHHCCceEEecCCcEEEeccc--------------
Confidence 45688999999999999995 452 22333 6888899999999999999998 5677764421
Q ss_pred CCeEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCchhhhhccCeeeccCCCCCeeeeeecCccccCCCcceeEe
Q 002136 250 PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKI 329 (961)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~v~~ 329 (961)
.+.|..|.|+.-..-+..|..+ . ..
T Consensus 149 ---------------------------------------f~~YG~LS~~~~le~l~~gar~--------~----~~---- 173 (464)
T COG0215 149 ---------------------------------------FKDYGKLSGRDSLEELQAGARV--------E----VD---- 173 (464)
T ss_pred ---------------------------------------chhhHhhcCCCChhHHhhcccc--------c----cc----
Confidence 1123333322100000000000 0 00
Q ss_pred CCCCChhHHHHHHHhCCCceeecCCCCcccccccccCCCchHHHHHHHHHHHHHcCCccccccccccCCcccCCCCceee
Q 002136 330 SPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEP 409 (961)
Q Consensus 330 ~Pah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~ 409 (961)
.=-.+|.||.+||.. +
T Consensus 174 ~~Krnp~DFvLWK~s------------------------------------------------------------k---- 189 (464)
T COG0215 174 EEKRNPLDFVLWKAA------------------------------------------------------------K---- 189 (464)
T ss_pred cccCCchhheeeccC------------------------------------------------------------C----
Confidence 002345555554321 0
Q ss_pred eeccceeeeccHHHHHHHHHHHcCCceeechhHHHHHHHHHhcCCCceeeeccCCCcccceEEEcCCcccEEEecChHHH
Q 002136 410 LVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEA 489 (961)
Q Consensus 410 ~~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~ 489 (961)
.|+. -| .-.||.-=|-|+++|.
T Consensus 190 ----------------------~gEp-------------------~W----~SPWG~GRPGWHIECS------------- 211 (464)
T COG0215 190 ----------------------PGEP-------------------SW----DSPWGKGRPGWHIECS------------- 211 (464)
T ss_pred ----------------------CCCC-------------------CC----CCCCCCCCCchhHHHH-------------
Confidence 0111 12 4578888899998640
Q ss_pred HHHHHhhcCCCcccccCCCceeeeecCCCccccccCCCCCChhHHhhcCCcceEeeeccccccHHHHHHHHHhHhcCCCC
Q 002136 490 LEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVP 569 (961)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~dvldtWf~S~l~~~~~~~~p~~~~~~~~~~~P~d~~~~G~Dil~fw~~~~i~~~~~l~~~~P 569 (961)
.+....+| + ..|+|.+|.|++|.|.-.-++.+.+.+|..|
T Consensus 212 ----------------------------aM~~~~LG------~------~~DIHgGG~DLiFPHHENEiAQsea~~g~~~ 251 (464)
T COG0215 212 ----------------------------AMSTKYLG------E------TFDIHGGGSDLIFPHHENEIAQSEAATGVKP 251 (464)
T ss_pred ----------------------------HHHHHHhC------C------CcceecCcccccCCCcccHHHHHHhhhCCCc
Confidence 01112222 1 2489999999999999999999999999889
Q ss_pred ceEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHhCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHhh
Q 002136 570 FSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQN 649 (961)
Q Consensus 570 fk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~~~~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~ 649 (961)
|.++++|.-.+..+|+|||||+||+|+..|++++|++.+|||+|+++.+.++++||++.++.+++.+.+|.|+++.+...
T Consensus 252 ~a~yWmH~G~l~i~geKMSKSLGNfiti~d~l~~~~p~~lR~~lls~HYR~pl~fsee~L~~A~~~l~rl~~~~~~~~~~ 331 (464)
T COG0215 252 FAKYWMHNGFLNIDGEKMSKSLGNFITVRDLLKKYDPEVLRLFLLSSHYRSPLDFSEELLEEAKKALERLYNALRRLRDL 331 (464)
T ss_pred ceeEeEEcceeeecCcCcccccCCeeEHHHHHhhcCHHHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999986666699999999999999999999999999999999999999999999999999999999999998766532
Q ss_pred CCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhh-hcCChHHHHHHHHHHH
Q 002136 650 LPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASY-DKYFFGDVGRETYDFF 714 (961)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~-e~~~f~~A~~~i~~f~ 714 (961)
..+.. .. .+.....++.++| +.|++..|+..+.+++
T Consensus 332 ~~~~~---------------------~~--------~~~~~~~~f~~al~DDfnt~~al~~l~~l~ 368 (464)
T COG0215 332 AGDAE---------------------LA--------DLKEFEARFREALDDDFNTPKALAVLFELA 368 (464)
T ss_pred ccccc---------------------cc--------hhHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 21110 00 3445566677777 5799999999999987
No 59
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=2.2e-24 Score=236.05 Aligned_cols=363 Identities=21% Similarity=0.227 Sum_probs=263.6
Q ss_pred CCCcCCCCCCchhhHhHHHHHHHHHHH-HcCCCeeecCCCCCCCchHHHHHHHHHHH--cCCCccccCHHHHHHHHHHHH
Q 002136 98 PPNVTGSLHMGHAMFVTLEDIMVRYHR-MKGRPTLWLPGTDHAGIATQLVVEKMLAA--EGIKRVELSRDEFTKRVWEWK 174 (961)
Q Consensus 98 pPy~nG~LHiGHa~~~~~~Di~~R~~r-m~G~~Vl~~~G~D~~Gl~~q~~vek~l~~--~g~~~~~~~~~~f~~~~~~~~ 174 (961)
=|+|...-|||||++|+--||+-|+.+ --||+|.|++++-+.-= ++-+.+++ .+..+-.+. +. +
T Consensus 62 GpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDD----KII~RAr~~~m~e~~~~l~------~~--F- 128 (586)
T KOG2007|consen 62 GPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDD----KIIKRARKEEMGEKPLSLS------ER--F- 128 (586)
T ss_pred cCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchhH----HHHHHhhhhhhccchhhHH------HH--H-
Confidence 389999999999999999999999999 89999999998866332 33333331 223332221 11 1
Q ss_pred HHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCceEEcCeeeecCCCCCccccccccccccCCCeEE
Q 002136 175 EKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLY 254 (961)
Q Consensus 175 ~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~w~p~~~t~lsd~Ev~~~e~~~~~~ 254 (961)
.+|.+.+.++|.+|++-..= ..|--.+|.-.+..+..++.++|+.|..+..|+++..-
T Consensus 129 ~~~e~eF~~DM~~LnvLpPt---v~tRVSeyvp~II~fIqkIIdnG~aY~~dGsVYFdv~k------------------- 186 (586)
T KOG2007|consen 129 CYYEEEFLQDMAALNVLPPT---VQTRVSEYVPQIIKFIQKIIDNGYAYAVDGSVYFDVDK------------------- 186 (586)
T ss_pred HHHHHHHHHHHHHhCCCCCc---ccchhhhchHHHHHHHHHHHhCCceeeeCCcEEEeccc-------------------
Confidence 15678889999999987662 22444578888999999999999999998888765321
Q ss_pred EEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCchhhhhccCeeeccCCCCCeeeeeecCccccCCCcceeEeCCCCC
Q 002136 255 YIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHD 334 (961)
Q Consensus 255 ~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~v~~~Pah~ 334 (961)
| ...|..|+|..-..+. |-|..--.---.
T Consensus 187 ---f------------------------------~~~YgKL~G~~~~~~~------------------gEg~l~ds~KR~ 215 (586)
T KOG2007|consen 187 ---F------------------------------PHSYGKLVGQRKNLQE------------------GEGVLSDSRKRS 215 (586)
T ss_pred ---c------------------------------cchhhhhcCchhhccc------------------CcCccccccCCC
Confidence 0 0124455553311111 112111112235
Q ss_pred hhHHHHHHHhCCCceeecCCCCcccccccccCCCchHHHHHHHHHHHHHcCCccccccccccCCcccCCCCceeeeeccc
Q 002136 335 HNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQ 414 (961)
Q Consensus 335 ~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~q 414 (961)
|+||.+||..+
T Consensus 216 p~DFALWKAsK--------------------------------------------------------------------- 226 (586)
T KOG2007|consen 216 PADFALWKASK--------------------------------------------------------------------- 226 (586)
T ss_pred hhhhhhhhhcC---------------------------------------------------------------------
Confidence 77888876431
Q ss_pred eeeeccHHHHHHHHHHHcCCceeechhHHHHHHHHHhcCCCceeeeccCCCcccceEEEcCCcccEEEecChHHHHHHHH
Q 002136 415 WFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAH 494 (961)
Q Consensus 415 wF~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (961)
.|+. -| .-.||.-=|-|++++.
T Consensus 227 -----------------~gEP-------------------~W----eSPWG~GRPGWHIECS------------------ 248 (586)
T KOG2007|consen 227 -----------------PGEP-------------------SW----ESPWGKGRPGWHIECS------------------ 248 (586)
T ss_pred -----------------CCCC-------------------CC----CCCCCCCCCCceeeeH------------------
Confidence 1111 12 3479999999999741
Q ss_pred hhcCCCcccccCCCceeeeecCCCccccccCCCCCChhHHhhcCCcceEeeeccccccHHHHHHHHHhHhcCCCCceEEE
Q 002136 495 QKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVY 574 (961)
Q Consensus 495 ~~~~~~~~~~~~~dvldtWf~S~l~~~~~~~~p~~~~~~~~~~~P~d~~~~G~Dil~fw~~~~i~~~~~l~~~~Pfk~v~ 574 (961)
+| +| ..+| ...|+|-+|.|+-|.|.-.-++.+.+.....++-+.+
T Consensus 249 --------------aM----as-----~~lG------------~~lDIH~GG~DL~FPHHeNEiAQ~eA~~~~~~wVnYf 293 (586)
T KOG2007|consen 249 --------------AM----AS-----AILG------------SQLDIHGGGIDLAFPHHENEIAQSEAAFDDSQWVNYF 293 (586)
T ss_pred --------------HH----HH-----Hhhc------------cccceecCcccccCCCcccHHHHHHHHhcCCccceeE
Confidence 00 00 0112 1258999999999999999999999998888889999
Q ss_pred EeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHhCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 002136 575 LHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQN 654 (961)
Q Consensus 575 ~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~~~~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~ 654 (961)
+|.--+..+|+|||||++|+|+..+++++|.+++||++++.+...++++|+.+.++.+..+.+.+.|++.-+........
T Consensus 294 lHtGhL~i~g~KMSKSLkNFiTIke~Lk~~sp~qLRl~fl~~~wr~~ldYs~s~m~~a~q~e~~~~~ff~~~~al~~~~~ 373 (586)
T KOG2007|consen 294 LHTGHLTINGEKMSKSLKNFITIKEALKKYSPRQLRLAFLLHQWRSPLDYSDSTMEQALQLEKSLNNFFLDVKALLRGAK 373 (586)
T ss_pred EEcCeeeeccchhhhhhccceeHHHHHHhcCHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 98554459999999999999999999999999999999999988999999999999988888888776643332221110
Q ss_pred chhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhh-hcCChHHHHHHHHHHHHHhhhHHHHHHhh
Q 002136 655 DISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASY-DKYFFGDVGRETYDFFWSDFADWYIEASK 727 (961)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~-e~~~f~~A~~~i~~f~~~~~~n~Yle~~K 727 (961)
....++..+..+..++..+..+|+.++ ++++...++..+.+++ ..+|.||...+
T Consensus 374 -----------------~~~~~~~~e~~l~~~~~~t~~~vh~al~d~~dT~~v~~~~~~lv--s~~N~~i~~~~ 428 (586)
T KOG2007|consen 374 -----------------PFEKLSEKEAELLEDFGKTQTAVHAALCDNFDTPRVMEAIRELV--SQGNAYIRESG 428 (586)
T ss_pred -----------------hhhccChHHHHHHHhhhhHHHHHHHHHHhccccHHHHHHHHHHH--hhhhHHHHHhc
Confidence 124567788999999999999999888 7899999999999998 68999997766
No 60
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.93 E-value=2.8e-25 Score=228.45 Aligned_cols=175 Identities=25% Similarity=0.476 Sum_probs=145.4
Q ss_pred cCHHHHHHHHH-HHHHHHHHHHHHHh--hCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhhhc
Q 002136 624 LSIERLTANKA-FTNKLWNAGKFILQ--NLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDK 700 (961)
Q Consensus 624 f~~~~~~~~~~-~~nkl~N~~rf~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~ 700 (961)
||++.+++.++ |++||||++||+++ +..++.+.. .......++..|+|++++++.++++++++|++
T Consensus 1 ~s~~~v~~~~~~f~~KlwN~~rf~l~~~~~~~~~~~~-----------~~~~~~~~~~~D~wil~~l~~~i~~~~~~~e~ 69 (183)
T cd07961 1 FSEKGVREVVRKVLLPLWNAYRFFVTYANLDGFDPGK-----------DDDAVASLNVLDRWILSRLNSLIKEVTEEMEA 69 (183)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc-----------cccccccCchhHHHHHHHHHHHHHHHHHHHHh
Confidence 68889999777 99999999999986 433322100 00011235678999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHhhhHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhcCC----C
Q 002136 701 YFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR----K 776 (961)
Q Consensus 701 ~~f~~A~~~i~~f~~~~~~n~Yle~~K~~l~~~~~~~~~~~~~~~l~~vl~~~l~LL~Pf~P~itEeiw~~L~~~----~ 776 (961)
|+|+.|++.+++|++ .+++||++.+|++++++++...+..++.++..+++.++++|||||||+|||||+.++.. .
T Consensus 70 ~~f~~a~~~l~~f~~-~~~~~Y~e~~K~~~~~~~~~~~~~~~~~~l~~~l~~ll~ll~P~~P~~aEElw~~l~~~~~~~~ 148 (183)
T cd07961 70 YDLYTAVRALLEFID-ELTNWYIRRNRKRFWGEEGDDDKLAAYATLYEVLLTLSRLMAPFTPFITEEIYQNLRRELGDAP 148 (183)
T ss_pred ccHHHHHHHHHHHHH-HhhhhHhhhchHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhcCCCC
Confidence 999999999999997 56699999999999875433345678889999999999999999999999999999853 3
Q ss_pred CceeecCCCCCCC-CCChHHHHHHHHHHHHHHHHH
Q 002136 777 EALIVSPWPQTSL-PRHMSAIKRFENLQSLTRAIR 810 (961)
Q Consensus 777 ~si~~~~wP~~~~-~~d~~~~~~~~~~~~~v~~ir 810 (961)
++|+.++||+++. +.|+.+++.++.++++++.+|
T Consensus 149 ~si~~~~wP~~~~~~~~~~~~~~~~~l~~~i~~~r 183 (183)
T cd07961 149 ESVHLLDWPEVDESLIDEELEEAMELVREIVELGR 183 (183)
T ss_pred CceeeecCCCCcccccCHHHHHHHHHHHHHHHhhC
Confidence 6899999999874 678889999999999999886
No 61
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=99.93 E-value=9e-26 Score=240.64 Aligned_cols=292 Identities=22% Similarity=0.275 Sum_probs=183.8
Q ss_pred CEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHH
Q 002136 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRV 170 (961)
Q Consensus 91 ~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~ 170 (961)
+..+...=|+|...+||||+++++..|++.||.+..||+|.++.+.-+.. -++.+.+++.|+++.++
T Consensus 8 ~v~~Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiD----DKii~~A~~~g~~~~el--------- 74 (300)
T PF01406_consen 8 KVRMYVCGPTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDID----DKIIKRAREEGVSPQEL--------- 74 (300)
T ss_dssp EEEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SS----HHHHHHHHHTTS-HHHH---------
T ss_pred eEEEEcCCCCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccc----hHHHHHHHhccCCHHHH---------
Confidence 34444444899999999999999999999999999999999998876643 34556677889887654
Q ss_pred HHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCceEEcC-eeeecCCCCCccccccccccccC
Q 002136 171 WEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGS-YMVNWSPNLQTAVSDLEVEYSEE 249 (961)
Q Consensus 171 ~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~-~~v~w~p~~~t~lsd~Ev~~~e~ 249 (961)
+.+|.+.+.++|++||+.-...- +--.+|...+..+..+|.++|+.|... .-|+++...
T Consensus 75 ---a~~y~~~f~~dm~~Lnv~~p~~~---prate~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~~-------------- 134 (300)
T PF01406_consen 75 ---ARRYEEEFFEDMKALNVLPPDHY---PRATEHIPEIIELIEKLIDKGHAYESEDGSVYFDVSK-------------- 134 (300)
T ss_dssp ---HHHHHHHHHHHHHHTT----SEE---EEGGGGHHHHHHHHHHHHHTTSEEEETTSEEEE-CCG--------------
T ss_pred ---HHHHHHHHHHHHHHcCCCCCccc---cchhccHHHHHHHHHHHHHCCCeEEcCCCcEEEeecc--------------
Confidence 46788899999999999876333 333478899999999999999999999 887764320
Q ss_pred CCeEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCchhhhhccCeeeccCCCCCeeeeeecCccccCCCcceeEe
Q 002136 250 PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKI 329 (961)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~v~~ 329 (961)
.+.|
T Consensus 135 ---------------------------------------~~~Y------------------------------------- 138 (300)
T PF01406_consen 135 ---------------------------------------FPDY------------------------------------- 138 (300)
T ss_dssp ---------------------------------------STTT-------------------------------------
T ss_pred ---------------------------------------cccc-------------------------------------
Confidence 0011
Q ss_pred CCCCChhHHHHHHHhCCCceeecCCCCcccccccccCCCchHHHHHHHHHHHHHcCCccccccccccCCcccCCCCceee
Q 002136 330 SPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEP 409 (961)
Q Consensus 330 ~Pah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~ 409 (961)
|.+.+.+..+.+..-.... . ..-. .|.-+
T Consensus 139 ---------------------------------G~Ls~~~~~~l~~~~~~~~---------~-~~K~--------~p~DF 167 (300)
T PF01406_consen 139 ---------------------------------GKLSNQDLEDLEAGARVEV---------D-YEKR--------NPRDF 167 (300)
T ss_dssp ---------------------------------TTTTT-SHHHHHHCHHHTT-----------TTSS--------STT-E
T ss_pred ---------------------------------ccccccchhhHHhhhhccc---------c-cccC--------CCcce
Confidence 1222222111100000000 0 0000 01111
Q ss_pred eeccceeeeccHHHHHHHHHHHcCCceeechhHHHHHHHHHhcCCCceeeeccCCCcccceEEEcCCcccEEEecChHHH
Q 002136 410 LVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEA 489 (961)
Q Consensus 410 ~~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~ 489 (961)
.| |.... ..+ .+-.-.||---|-|++++ .
T Consensus 168 aL-------------------------WK~~~-----------~~e--~~w~spwG~GRPGWHiEC--s----------- 196 (300)
T PF01406_consen 168 AL-------------------------WKAAK-----------PGE--PSWDSPWGKGRPGWHIEC--S----------- 196 (300)
T ss_dssp EE-------------------------EEE-------------TTS----B--TTSSEEE-HHHHH--H-----------
T ss_pred ee-------------------------eeccc-----------ccC--CcccCCCccCcCceeeeh--H-----------
Confidence 11 11000 000 112357888889888753 0
Q ss_pred HHHHHhhcCCCcccccCCCceeeeecCCCccccccCCCCCChhHHhhcCCcceEeeeccccccHHHHHHHHHhHhcCCCC
Q 002136 490 LEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVP 569 (961)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~dvldtWf~S~l~~~~~~~~p~~~~~~~~~~~P~d~~~~G~Dil~fw~~~~i~~~~~l~~~~P 569 (961)
. +....+| -+.|++.+|.|++|.|.-.-++.+.+.+| .|
T Consensus 197 ---------------------------a-m~~~~lG------------~~~DIH~GG~DL~FPHHENEiAqs~a~~g-~~ 235 (300)
T PF01406_consen 197 ---------------------------A-MSMKYLG------------DTFDIHGGGIDLIFPHHENEIAQSEAATG-KP 235 (300)
T ss_dssp ---------------------------H-HHHHHHT------------TSEEEEEEEGGGTTTHHHHHHHHHHHHHS-S-
T ss_pred ---------------------------H-HHHHHcC------------CCceEEccccccCCCCccchHHHHHHhhC-ch
Confidence 0 1111112 24689999999999999999999999998 68
Q ss_pred ceEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHhCCCCCccccCHHHHHHHHH
Q 002136 570 FSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKA 634 (961)
Q Consensus 570 fk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~~~~~D~~f~~~~~~~~~~ 634 (961)
|.++++|.-.+..+|+|||||+||+++..|++++|+++++||+|+++.+.++++|+++.+++++|
T Consensus 236 ~a~~W~H~g~l~~~g~KMSKSlgN~~~i~dll~~~~~~~lR~~~l~~hYr~~l~~s~~~l~~A~n 300 (300)
T PF01406_consen 236 FANYWMHNGHLNVDGEKMSKSLGNFITIRDLLKKYSPDALRLFLLSTHYRKPLNFSEENLEEAKN 300 (300)
T ss_dssp SEEEEEEE--EEETTCE--TTTT---BHHHHHTTS-HHHHHHHHHTS-TTS-EEE-HHHHHHHH-
T ss_pred HHHHHHHHHHHhhcCccccccCCCEEEHHHHhhcCCHHHHHHHHhcCCCCCccccCHHHHHHhcC
Confidence 89999995555599999999999999999999999999999999999999999999999987653
No 62
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.92 E-value=3.3e-24 Score=251.10 Aligned_cols=125 Identities=18% Similarity=0.224 Sum_probs=90.6
Q ss_pred CCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCC--------chHHHHHHHHHHHcCCCccc
Q 002136 89 SDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAG--------IATQLVVEKMLAAEGIKRVE 160 (961)
Q Consensus 89 ~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~G--------l~~q~~vek~l~~~g~~~~~ 160 (961)
++.++|.+|+ +|||.+||||++.++.+|+++|+.|++|++|.+++|+|+|| +|.+...+ +..|.+...
T Consensus 22 ~~~~~~~~g~-~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~---~~~G~pl~~ 97 (510)
T PRK00750 22 KPPVVVETGI-GPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLE---EYLGKPLTE 97 (510)
T ss_pred CCcEEEEeCC-CCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHH---HhcCccccc
Confidence 3459999986 69999999999999999999999999999999999999998 66532222 234665322
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCC-hhhHHHHHHHHHHHHhcCce
Q 002136 161 LSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLD-EQLSRAVVEAFIRLHEKGLI 222 (961)
Q Consensus 161 ~~~~~f~~~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d-~~~~~~v~~~F~~L~~~GlI 222 (961)
+.. .|-. +..|++.+...+++.|+++|+++|+-+ |++ .....+.+.++..|.+.+.|
T Consensus 98 ~p~-p~G~-~~~~~~~~~~~~~~~~~~~gi~~d~~~---~t~~y~~g~~~~~i~~~l~~~~~i 155 (510)
T PRK00750 98 IPD-PFGC-HESYAEHFNAPLREFLDRFGIEYEFIS---ATECYKSGRYDEAILTALENRDEI 155 (510)
T ss_pred CCC-CCCC-chHHHHHHHHHHHHHHHHcCCceEEEe---hhhhhccCchHHHHHHHHHhHHHH
Confidence 211 1111 567889999999999999999999433 222 22224555566666666666
No 63
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.91 E-value=1.1e-23 Score=215.90 Aligned_cols=175 Identities=26% Similarity=0.429 Sum_probs=144.0
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhhhcCCh
Q 002136 624 LSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFF 703 (961)
Q Consensus 624 f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f 703 (961)
++.+.+++.+++++|+||++||+.+++.++.+... ......++..|+|++++++.++++++++|++|+|
T Consensus 1 i~~~~~~~~~~~~~Kl~N~~rf~~~~~~~~~~~~~-----------~~~~~~~~~~D~~il~~l~~~i~~~~~~~e~~~f 69 (180)
T cd07960 1 ISDEILKQVAEAYRKIRNTFRFLLGNLNDFDPAKD-----------AVPYEELLELDRYALHRLNELIKEVREAYENYEF 69 (180)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccCCCcccc-----------cCChhhccHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 46788899999999999999999987765432000 0001244678999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhhhhccCC-ChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhcCC--CCcee
Q 002136 704 GDVGRETYDFFWSDFADWYIEASKARLYRSE-YDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR--KEALI 780 (961)
Q Consensus 704 ~~A~~~i~~f~~~~~~n~Yle~~K~~l~~~~-~~~~~~~~~~~l~~vl~~~l~LL~Pf~P~itEeiw~~L~~~--~~si~ 780 (961)
+.|++.+++|+++++||+|++.+|||++++. ++..+..+..+++.+++.+++||+|||||+||+||+.|+.. .++++
T Consensus 70 ~~a~~~i~~f~~~~l~n~Yi~~~k~~~~~~~~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~~aeel~~~l~~~~~~~~v~ 149 (180)
T cd07960 70 HKVYQALNNFCTVDLSAFYLDIIKDRLYCDAKDSLERRSAQTVLYHILDALLKLLAPILPFTAEEVWEHLPGEKKEESVF 149 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccceecCCCCCHHHHHHHHHHHHHHHHHHHHHcchhhhhHHHHHHhccccCCCCCee
Confidence 9999999999998999999999999998632 22334567889999999999999999999999999999864 46899
Q ss_pred ecCCCCCCC-CCChHHHHHHHHHHHHHHHH
Q 002136 781 VSPWPQTSL-PRHMSAIKRFENLQSLTRAI 809 (961)
Q Consensus 781 ~~~wP~~~~-~~d~~~~~~~~~~~~~v~~i 809 (961)
.++||+.+. +.|++++..|+.++++-..+
T Consensus 150 ~~~wP~~~~~~~~~~~~~~~~~~~~i~~~~ 179 (180)
T cd07960 150 LEDWPELPEEWKDEELEEKWEKLLALRDEV 179 (180)
T ss_pred ccCCCCCcccccCHHHHHHHHHHHHHHHhh
Confidence 999999874 67888888888777755443
No 64
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=99.91 E-value=1.8e-22 Score=241.11 Aligned_cols=205 Identities=13% Similarity=0.036 Sum_probs=140.5
Q ss_pred ceEeeeccccccHHHHHHHHHhHhcC-CCCceEEEEeceEEcCCCccccccCCCccCch---------------------
Q 002136 541 TMLETGHDILFFWVARMVMMGIEFTG-SVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPI--------------------- 598 (961)
Q Consensus 541 d~~~~G~Dil~fw~~~~i~~~~~l~~-~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~--------------------- 598 (961)
-+++.|.|+. .++.++......+ | ..| +++..|++.+ .+|.|||||+||+|+|.
T Consensus 330 iI~V~g~~q~-~h~~~v~~~l~~l-G~~~~-~~l~h~~~~~-V~~~kmSkr~Gn~V~~~dll~~~~~ra~~~i~~~~~~~ 405 (566)
T TIGR00456 330 MIYVWGSDHH-LHIAQFFAILEKL-GFYKK-KELIHLNFGM-VPLGSMKTRRGNVISLDNLLDEASKRAGNVITIKNDLE 405 (566)
T ss_pred EEEEecCcHH-HHHHHHHHHHHHc-CCCCC-CceEEEEEEE-EECCCCCccCCceeeHHHHHHHHHHHHHHHHHhcCCcc
Confidence 3677888854 4566654433333 4 344 7888888887 67899999999999998
Q ss_pred --hhhhhcChhHHHHHHHhCCCCCccccCHHHHHH-HHHHHHHHHHHHHHHHhhCCCCCchhhHHHHHhhccchhhhhcC
Q 002136 599 --DTIKEFGADALRFTISLGTAGQDLSLSIERLTA-NKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCK 675 (961)
Q Consensus 599 --dii~~yGaDalR~~L~~~~~~~D~~f~~~~~~~-~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (961)
++++++|+|++||++++..+++|++||++.+.. +.+..+-+.|+..++.+.+........ .....+...
T Consensus 406 ~~~~~~~vg~dAvRy~~L~~~~~~d~~Fd~d~~~~~~~n~~~yiqYa~aR~~SIlrK~~~~~~--------~~~~~~~~~ 477 (566)
T TIGR00456 406 EEDVADAVGIGAVRYFDLSQNRETHYVFDWDAMLSFEGNTAPYIQYAHARICSILRKADIDGE--------KLIADDFSL 477 (566)
T ss_pred HHHHHHHhcccceeeHHhhcCCCCCceecHHHHhccCCCCchhHHHHHHHHHHHHHhcccccc--------cccccccCC
Confidence 778889999999999998889999999998654 334455555555444332211110000 000000112
Q ss_pred CCchhHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhhHHHHHHhhhhhccCCCh---HHHHHHHHHHHHHHHH
Q 002136 676 APLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYD---SDAIIAQAVLLYIFEN 752 (961)
Q Consensus 676 ~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~i~~f~~~~~~n~Yle~~K~~l~~~~~~---~~~~~~~~~l~~vl~~ 752 (961)
..+.++.++..+..+.+.+.+++++++++.++..+++++ ..+|.|++.. ++...+++ ..|.........+|..
T Consensus 478 ~~~~e~~Ll~~l~~~~~~v~~a~~~~~p~~~~~~l~~La--~~~N~yy~~~--~Vl~~~~~~~~~~RL~L~~a~~~vl~~ 553 (566)
T TIGR00456 478 LEEKEKELLKLLLQFPDVLEEAAEELEPHVLTNYLYELA--SLFSSFYKAC--PVLDAENENLAAARLALLKATRQTLKN 553 (566)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH--HHHHHHHhcC--ccCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 245577889999999999999999999999999999997 5678888755 44443232 2444555566778888
Q ss_pred HHHHhCCCc
Q 002136 753 ILKLLHPFM 761 (961)
Q Consensus 753 ~l~LL~Pf~ 761 (961)
.+.||.-=+
T Consensus 554 gL~lLGI~~ 562 (566)
T TIGR00456 554 GLQLLGIEP 562 (566)
T ss_pred HHHhcCCCc
Confidence 888885433
No 65
>PF13603 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; PDB: 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 2BTE_A 2V0G_A 2BYT_A ....
Probab=99.89 E-value=5.2e-23 Score=207.26 Aligned_cols=127 Identities=38% Similarity=0.679 Sum_probs=98.8
Q ss_pred EEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCchhh---------------------------------hhccCee
Q 002136 254 YYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYS---------------------------------QFIGMMA 300 (961)
Q Consensus 254 ~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~y~---------------------------------~l~g~~~ 300 (961)
..|+|++.+++..|.|+|||||||+|.+.||++|+++.-+ -+.|.++
T Consensus 10 ~~i~F~i~~~~~~i~vFTTrpdTifGvtfials~~H~lv~~l~~~~~~l~~fi~~~~~~~~~~~~~~~~~k~Gv~tg~~a 89 (185)
T PF13603_consen 10 AEIDFKIKGSNEKIEVFTTRPDTIFGVTFIALSPEHPLVKKLAENNPELQEFIEKCKKIKNSERNKDFKEKEGVFTGLYA 89 (185)
T ss_dssp EEEEEEBTTSSCEEEEEES-GGGGGG--EEEEETTSCHHHHCTTTHHHHHHHHHHHHTS-HHHHHHCSSS--EEEEEEEE
T ss_pred EEEEEEecCCCCEEEEEECCcchhhCceEEEECCCCHHHHhhhhhhhhHHHHHHHHhcCCHhHhhhhccccccCcCCCEE
Confidence 5788999988889999999999999999999999986210 1468899
Q ss_pred eccCCCCCeeeeeecCccccCCCcceeEeCCCCChhHHHHHHHhCCCceeecCC----------------CCcccccccc
Q 002136 301 IVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNK----------------DGTLNEVAGL 364 (961)
Q Consensus 301 ~~P~~~~~~ipii~~~~V~~~~GTG~v~~~Pah~~~D~~~~~~~~l~~~~~~~~----------------~G~~~~~~g~ 364 (961)
.||++ ++.+||+.++||.+++|||+||.||+||.+||++|++||||+..++.. +|.++ ++|+
T Consensus 90 ihP~t-~~~iPI~va~yVl~~yGtgAVmgvPahD~rD~~FAk~~~lpi~~Vi~~~~~~~~~~~~~~~~~~~G~l~-nS~~ 167 (185)
T PF13603_consen 90 IHPLT-GKKIPIYVANYVLMDYGTGAVMGVPAHDERDFEFAKKYNLPIKQVIKPKDDNEEIDNKQEAYTGDGILI-NSGE 167 (185)
T ss_dssp E-TTT-S-EEEEEEETTS-TTSTTSEEEE-CCC-HHHHHHHHHHT------EEBSSSS---STTSS---S--EE--SSGG
T ss_pred ECCCC-CCCccEEEECceeecCCcceEEEcCCCCHHHHHHHHHcCCCeeEEEcCCCCcccccccccCcCCCEEEE-eCCC
Confidence 99995 899999999999999999999999999999999999999998777642 36665 7899
Q ss_pred cCCCchHHHHHHHHHHHH
Q 002136 365 FRGLDRFEARKKLWSDLE 382 (961)
Q Consensus 365 ~~G~~~~~ar~~i~~~L~ 382 (961)
|.||+..+|+++|++.|+
T Consensus 168 f~Gl~~~eA~~~I~~~Le 185 (185)
T PF13603_consen 168 FNGLSSKEAREKIIKKLE 185 (185)
T ss_dssp GTTSBHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 999999999999999986
No 66
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A ....
Probab=99.89 E-value=2.4e-22 Score=200.60 Aligned_cols=147 Identities=35% Similarity=0.690 Sum_probs=125.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhhHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCC
Q 002136 680 ECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHP 759 (961)
Q Consensus 680 D~~il~~l~~~~~~v~~a~e~~~f~~A~~~i~~f~~~~~~n~Yle~~K~~l~~~~~~~~~~~~~~~l~~vl~~~l~LL~P 759 (961)
|+||+++++.++++++++|++|+|+.|++.+++|+++++||+|++.+|+|++++.+...++ ++.++..+++.+++||+|
T Consensus 1 D~~il~~~~~~~~~~~~~~e~~~f~~a~~~i~~f~~~~~~n~Yl~~~k~~~~~~~~~~~~~-~~~~l~~~l~~~~~ll~P 79 (153)
T PF08264_consen 1 DRWILSKLNELIKKVTEAYENYEFNKALKEIMNFIWNDLSNWYLELIKPWLYCKDDDESRE-AQYTLYEILKILLILLSP 79 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHCHHHHHHHHHHHCTTTTCHHHH-HHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhcccchhcccchhHHH-HHHHHHHHHHHHhhccCC
Confidence 8999999999999999999999999999999999889999999999999999875544555 889999999999999999
Q ss_pred CchhhHHHHHHHhc----CCCCceeecCCCCCCC-CCChHH-HHHHHHHHHHHHHHHhhhhhcccCCCceeeEEE
Q 002136 760 FMPFVTEELWQSLR----KRKEALIVSPWPQTSL-PRHMSA-IKRFENLQSLTRAIRNARAEYSVEPAKRISASI 828 (961)
Q Consensus 760 f~P~itEeiw~~L~----~~~~si~~~~wP~~~~-~~d~~~-~~~~~~~~~~v~~ir~~r~~~~i~~~~~~~~~i 828 (961)
||||+||+||++|+ +.++|++.+.||. +. ..+... ++.++.+.++++.+|++|++.+++++.+++++|
T Consensus 80 ~~P~~aEeiw~~l~~~~~~~~~si~~~~~p~-~~~~~~~~~~~~~~~~~~~v~~~i~~~r~~~~i~~~~~~~v~i 153 (153)
T PF08264_consen 80 FMPFIAEEIWQRLKSEKLGEKSSIFLEKWPE-DPEFIDEELEEEAFEILKEVVQVIRKIRKEKNIKPKEPLKVVI 153 (153)
T ss_dssp TSHHHHHHHHHHCTTHHTTSSSSGGGS------GGGGHHHH-HHHHHHHHHHHHHHHHHHHCCEESTTCGEEEEE
T ss_pred CCcHHHHHHHHHhhhccCCCCCeeeeCCCCC-ChhhhcHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCccC
Confidence 99999999997653 2357899999998 42 234555 788999999999999999999999999888765
No 67
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=1.2e-18 Score=204.55 Aligned_cols=202 Identities=19% Similarity=0.210 Sum_probs=135.7
Q ss_pred ceEeeeccccccHHHHHHHHHhHhcCCCCceEEEE---eceEEcCCCccccccCCCccCchhhhhhcC------------
Q 002136 541 TMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYL---HGLIRDSQGRKMSKTLGNVIDPIDTIKEFG------------ 605 (961)
Q Consensus 541 d~~~~G~Dil~fw~~~~i~~~~~l~~~~Pfk~v~~---hg~v~d~~G~KMSKS~GNvI~p~dii~~yG------------ 605 (961)
-+++.|.|+. .++.++-.... +.|..|-+.+++ .|++++.+|.||||..|++|+.+|++++-|
T Consensus 337 ~IyV~gadq~-~~~~ql~~~l~-~~g~~~~~~~~~h~~~~l~~~~~g~kmStR~G~~vtl~dllde~~era~~~~~~~~~ 414 (577)
T COG0018 337 LIYVLGADQH-GHFKQLKAVLE-LLGYGPDKEVLLHQGVGLVRGGEGVKMSTRAGNVVTLDDLLDEAGERAPEEMEEKEE 414 (577)
T ss_pred EEEEeCCcch-hHHHHHHHHHH-HhcCCCccceEEEEEEeeeECCCCccccccCCceEEHHHHHHHHHHHhhhHhhhhhh
Confidence 3778898954 45555543222 223333234444 466777899999999999999999999988
Q ss_pred ----------hhHHHHHHHhCCCCCccccCHHHHHHHHH--------HHHHHHHHHHHHHhhCCCCCchhhHHHHHhhcc
Q 002136 606 ----------ADALRFTISLGTAGQDLSLSIERLTANKA--------FTNKLWNAGKFILQNLPSQNDISRWEILLAYKF 667 (961)
Q Consensus 606 ----------aDalR~~L~~~~~~~D~~f~~~~~~~~~~--------~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~ 667 (961)
.||+||++++.++.+++.||++.+.+... -..++.+.+|-.... ....
T Consensus 415 ~~~~iA~~vgi~Avry~~l~~~~~~~~~Fd~d~~lsfegNt~pYvQYA~ARi~SIlrka~e~--~~~~------------ 480 (577)
T COG0018 415 KNEEIAEVVGIDAVRYADLSRSRDKDYVFDWDKALSFEGNTAPYVQYAHARICSILRKAGED--ELDL------------ 480 (577)
T ss_pred hhHHHHHHhhhhhHHHHHHhcCCCCCcEeeHHHHHhccCCCchhHHHHHHHHHHHHHhcccc--cccc------------
Confidence 99999999999999999999999875211 111222222221111 0000
Q ss_pred chhhhhcCCCchhHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhhHHHHHHhhhhhccCCChH---HHHHHHH
Q 002136 668 DEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDS---DAIIAQA 744 (961)
Q Consensus 668 ~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~i~~f~~~~~~n~Yle~~K~~l~~~~~~~---~~~~~~~ 744 (961)
..........+.++.++.+|..+...+.++.+.++.+..+..++++. ..|++|| .+.++.+.++.. .|.....
T Consensus 481 ~~~~~~~l~~~~E~~L~~~L~~fp~vl~~aa~~~~Ph~la~YL~~LA-~~Fn~fY---~~~~Vl~~~~~~~~~aRL~L~~ 556 (577)
T COG0018 481 STEADALLTELEERELVKKLLEFPEVLEEAAEELEPHRLANYLYDLA-GSFNSFY---NACPVLGAENEELRAARLALVK 556 (577)
T ss_pred ccccchhccChHHHHHHHHHHHhHHHHHHHHHhcCchHHHHHHHHHH-HHHHHHH---hhCCcCCCCcHHHHHHHHHHHH
Confidence 00000011123368899999999999999999999999999999998 7899999 456666554432 3445555
Q ss_pred HHHHHHHHHHHHhCCCch
Q 002136 745 VLLYIFENILKLLHPFMP 762 (961)
Q Consensus 745 ~l~~vl~~~l~LL~Pf~P 762 (961)
....+|...+.||--=+|
T Consensus 557 a~~~vL~ngL~LLGI~~~ 574 (577)
T COG0018 557 ATRQVLKNGLDLLGIEAP 574 (577)
T ss_pred HHHHHHHHHHHhcCCCCc
Confidence 666788888888764333
No 68
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.83 E-value=1.3e-19 Score=210.76 Aligned_cols=99 Identities=16% Similarity=0.212 Sum_probs=75.1
Q ss_pred CCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCC--------CchHHHHHHHHHHHcCCCcccc
Q 002136 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHA--------GIATQLVVEKMLAAEGIKRVEL 161 (961)
Q Consensus 90 ~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~--------Gl~~q~~vek~l~~~g~~~~~~ 161 (961)
++++|.+|.+ |||.+||||++..+.+|+++|+.|++|++|.+++|+|+| ++| +. .++. .|.+...+
T Consensus 18 ~~~~~~tg~~-psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p-~~-~~~y---lG~Pl~~v 91 (515)
T TIGR00467 18 NLYTVASGIT-PSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLP-EE-LETY---LGMPLTRI 91 (515)
T ss_pred CeEEEecCCC-CCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCccccccccccc-HH-HHHh---CCCcceec
Confidence 4699999988 999999999999999999999999999999999999999 444 11 1222 24321111
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCC
Q 002136 162 SRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTR 196 (961)
Q Consensus 162 ~~~~f~~~~~~~~~~~~~~i~~~l~~lG~s~Dw~r 196 (961)
. +-|- .+..|++.+...+.+.|..||+.+++-+
T Consensus 92 p-dp~g-~~~s~~~h~~~~~~~~l~~~gi~~e~~s 124 (515)
T TIGR00467 92 P-DPEG-CKTSYAEHFLIPFLESLPVLGINPEFIR 124 (515)
T ss_pred C-CCCC-CcHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 1 0010 1357788999999999999999988544
No 69
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=99.83 E-value=4.2e-18 Score=202.92 Aligned_cols=193 Identities=15% Similarity=0.121 Sum_probs=127.7
Q ss_pred eEeeeccccccHHHHHHHHHhHhcCCCCc--eEEEEeceEEcCCCccccccCCCccCchhhhhh----------------
Q 002136 542 MLETGHDILFFWVARMVMMGIEFTGSVPF--SHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE---------------- 603 (961)
Q Consensus 542 ~~~~G~Dil~fw~~~~i~~~~~l~~~~Pf--k~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~---------------- 603 (961)
+++.|.|+. .++.++...... .|..+- -.++..|+|. .+|+||||.+||+|+.+|++++
T Consensus 328 IyV~g~dq~-~h~~~l~~~~~~-lg~~~~~~l~h~~~g~V~-~~g~kmStR~G~~v~l~dLldea~~~a~~~~~~~~~~l 404 (562)
T PRK12451 328 LYVVGPEQS-LHFNQFFTVLKK-LGYTWVDGMEHVPFGLIL-KDGKKMSTRKGRVVLLEEVLEEAIELAKQNIEEKNPNL 404 (562)
T ss_pred EEEeCCcHH-HHHHHHHHHHHH-cCCCcccCeEEEeeeeEe-cCCCCCcCCCCCeeEHHHHHHHHHHHHHHHHHhhcccc
Confidence 667788854 455555443333 343221 2457888997 7899999999999999999996
Q ss_pred ---------cChhHHHHHHHhCCCCCccccCHHHHHHH---HH-----HHHHHHHHHHHHHhhCCCCCchhhHHHHHhhc
Q 002136 604 ---------FGADALRFTISLGTAGQDLSLSIERLTAN---KA-----FTNKLWNAGKFILQNLPSQNDISRWEILLAYK 666 (961)
Q Consensus 604 ---------yGaDalR~~L~~~~~~~D~~f~~~~~~~~---~~-----~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~ 666 (961)
.|.||+||++++.++.++++||++.+.+. .+ -..++..+++-.. . ....
T Consensus 405 ~~~~~~a~~vg~~Airy~~l~~~~~~~~~Fd~d~~l~~~g~t~pYiQYa~AR~~SIlrka~--~-~~~~----------- 470 (562)
T PRK12451 405 KQKEEVAKQVGVGAVIFHDLKNERMHNIEFSLENMLKFEGETGPYVQYTHARACSILRKES--V-EFET----------- 470 (562)
T ss_pred ccHHHHHHHhccceeeeHHhhcCCCCCceECHHHHhCcCCCccHHHHHHHHHHHHHHHhcC--C-Cccc-----------
Confidence 77999999999999999999999996431 00 0112222221110 0 0000
Q ss_pred cchhhhhcCCCchhHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhhHHHHHHhhhhhccCCC-hHHHHHHHHH
Q 002136 667 FDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEY-DSDAIIAQAV 745 (961)
Q Consensus 667 ~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~i~~f~~~~~~n~Yle~~K~~l~~~~~-~~~~~~~~~~ 745 (961)
....-..+.+.-++..+..+.+.+.+++++++++.++..++++. ...|.|++..+ .+ .++. ...|......
T Consensus 471 ----~~~~l~~~~E~~Ll~~L~~~~~~v~~a~e~~ep~~~~~yl~~LA--~~fN~fy~~~~-Vl-~~~~~~~~RL~L~~a 542 (562)
T PRK12451 471 ----CTFALKDDYSWSVVKLLNKFPQVIEAAFNKNEPSVISKYVLDVA--QSFNKYYGNVR-IL-EESAEKDSRLALVYA 542 (562)
T ss_pred ----cccCCCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHHHHHHHhCC-CC-CCHHHHHHHHHHHHH
Confidence 00111144567888999999999999999999999999999997 45677766432 22 2211 1244455556
Q ss_pred HHHHHHHHHHHhCC
Q 002136 746 LLYIFENILKLLHP 759 (961)
Q Consensus 746 l~~vl~~~l~LL~P 759 (961)
...+|...+.||.-
T Consensus 543 ~~~vL~~gL~LLGI 556 (562)
T PRK12451 543 VTVVLKEGLRLLGV 556 (562)
T ss_pred HHHHHHHHHHhcCC
Confidence 66778888888753
No 70
>PLN02286 arginine-tRNA ligase
Probab=99.81 E-value=2.3e-17 Score=196.64 Aligned_cols=201 Identities=11% Similarity=0.131 Sum_probs=134.3
Q ss_pred ceEeeeccccccHHHHHHHHHhHhcCCC-C----ceEEEEeceEEcCCCccccccCCCccCchhhhhh------------
Q 002136 541 TMLETGHDILFFWVARMVMMGIEFTGSV-P----FSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE------------ 603 (961)
Q Consensus 541 d~~~~G~Dil~fw~~~~i~~~~~l~~~~-P----fk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~------------ 603 (961)
-++|.|.|+. .++.++....-.+ |.. + --.++..|+|+..+|+||||.+||+|+.+|++++
T Consensus 330 ~IyVvg~~q~-~hf~~v~~~l~~l-G~~~~~~~~~l~h~~~g~V~~~~g~kmStR~G~~v~L~dlldea~~~a~~~~~~~ 407 (576)
T PLN02286 330 IIYVTDVGQQ-QHFDMVFKAAKRA-GWLPEDTYPRLEHVGFGLVLGEDGKRFRTRSGEVVRLVDLLDEAKSRSKAALIER 407 (576)
T ss_pred EEEEEeCcHH-HHHHHHHHHHHHc-CCCccccCCceEEEeeccEECCCCCcccCCCCCeeEHHHHHHHHHHHHHHHHHhc
Confidence 3667788853 4565554433333 422 2 1356789999767899999999999999999994
Q ss_pred -----------------cChhHHHHHHHhCCCCCccccCHHHHHHH---HH-----HHHHHHHHHHHHHhhCCCCCchhh
Q 002136 604 -----------------FGADALRFTISLGTAGQDLSLSIERLTAN---KA-----FTNKLWNAGKFILQNLPSQNDISR 658 (961)
Q Consensus 604 -----------------yGaDalR~~L~~~~~~~D~~f~~~~~~~~---~~-----~~nkl~N~~rf~~~~~~~~~~~~~ 658 (961)
.|.||+||++++.++.++++||++.+.+. .. -..++..++|-.........
T Consensus 408 ~~~~~~~~~~~~~~a~~vg~~Airy~~L~~~~~~~~~Fd~d~~l~~~g~t~pYlQYahAR~~SIlrKa~~~~~~~~---- 483 (576)
T PLN02286 408 GKDSEWTPEELEQAAEAVGYGAVKYADLKNNRLTNYTFSFDQMLDLKGNTAVYLLYAHARICSIIRKSGKDIDELK---- 483 (576)
T ss_pred cCccccchhhHHHHHHHhhhhhhhhhhhhcCCCCCCccCHHHHHhhcCCChHHHHHHHHHHHHHHHhccCcccccc----
Confidence 57899999999999999999999996541 00 11122222211110000000
Q ss_pred HHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhhHHHHHHhhhhhccCCChHH
Q 002136 659 WEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSD 738 (961)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~i~~f~~~~~~n~Yle~~K~~l~~~~~~~~ 738 (961)
......-..+.++-++..|..+...+..+.++++.+..+..++++. ..|+.+|= ..++...++...
T Consensus 484 ----------~~~~~~l~~~~E~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~LA-~~F~~fY~---~~~Vl~~~~~~a 549 (576)
T PLN02286 484 ----------KTGKIVLDHPDERALGLHLLQFPEVVEEACTDLLPNRLCEYLYNLS-EKFTKFYS---NCKVNGSEEETS 549 (576)
T ss_pred ----------ccccccCCCHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH-HHHHHHHh---cCccCCCCchhH
Confidence 0000111245678889999999999999999999999999999998 68999993 234443323345
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCc
Q 002136 739 AIIAQAVLLYIFENILKLLHPFM 761 (961)
Q Consensus 739 ~~~~~~~l~~vl~~~l~LL~Pf~ 761 (961)
|.........+|...+.||.-=+
T Consensus 550 RL~L~~a~~~vL~~gL~LLGI~~ 572 (576)
T PLN02286 550 RLLLCEATAIVMRKCFHLLGITP 572 (576)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCc
Confidence 56666677788888888885433
No 71
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.69 E-value=1.9e-16 Score=166.42 Aligned_cols=121 Identities=18% Similarity=0.181 Sum_probs=103.7
Q ss_pred EEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHH
Q 002136 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVW 171 (961)
Q Consensus 92 f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~ 171 (961)
.+|-..+|||||+|||||+++.++.|+++|+.|+.|++|.+..|+|++|.+++..+++.. .++
T Consensus 2 v~ve~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~-----------------~~~ 64 (212)
T cd00671 2 ILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLE-----------------KWR 64 (212)
T ss_pred eEEEecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHH-----------------HHH
Confidence 567778999999999999999999999999999999999999999999999876654321 155
Q ss_pred HHHHHHHHHHHHHHHHhCCccC-CCCCccCCChhhHHHHHHHHHHHHhcCceEEcCeeeecCCC
Q 002136 172 EWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPN 234 (961)
Q Consensus 172 ~~~~~~~~~i~~~l~~lG~s~D-w~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~w~p~ 234 (961)
++++.+.+.+.+.+++||+++| |.+ |++ +...++.++.+|.++|++|.....+..|+.
T Consensus 65 ~~~~~~~~~~~~~~~~L~i~~d~~~~---es~--~~~~~~~~i~~L~~~g~~~~~~g~~~~~~~ 123 (212)
T cd00671 65 KLVEESIKADLETYGRLDVRFDVWFG---ESS--YLGLMGKVVELLEELGLLYEEDGALWLDLT 123 (212)
T ss_pred HHHHHHHHHHHHHHHHhCCcCceecc---hhh--hhhHHHHHHHHHHHCCCEEEeCCcEEEech
Confidence 6678899999999999999999 776 333 378899999999999999999887766653
No 72
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.
Probab=99.66 E-value=2e-15 Score=147.34 Aligned_cols=135 Identities=42% Similarity=0.879 Sum_probs=109.8
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhhhcCCh
Q 002136 624 LSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFF 703 (961)
Q Consensus 624 f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f 703 (961)
||++.+.+.++|++|+||+++|+.++.......+ . +.......|+++++.++.+++++.++|++|+|
T Consensus 1 ~~~~~~~~~~~~l~k~~~~~~~~~~~~~~~~~~~------------~-~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~ 67 (135)
T cd07962 1 FDEKRVEGGRNFCNKLWNAARFVLMNLEDDDEPE------------E-DPESLSLADRWILSRLNKTVEEVTEALENYRF 67 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccccCccc------------c-ccccCCHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 6889999999999999999999865322111100 0 01223456899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHh
Q 002136 704 GDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSL 772 (961)
Q Consensus 704 ~~A~~~i~~f~~~~~~n~Yle~~K~~l~~~~~~~~~~~~~~~l~~vl~~~l~LL~Pf~P~itEeiw~~L 772 (961)
++|++.+++++.++++|+|++..+||...+ +.........++..+++.++++|+|||||+||++|+.|
T Consensus 68 ~~al~~i~~~~~~~~~N~Yi~~~~pW~~~~-~~~~~~~~~~~~~~~l~~l~~lL~P~~P~~ae~l~~~L 135 (135)
T cd07962 68 SEAATALYEFFWNDFCDWYLELVKPRLYGE-DEEEKKAARATLYYVLETILRLLHPFMPFITEELWQRL 135 (135)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhhHHHcCC-ChHHHHHHHHHHHHHHHHHHHHHCccccHHHHHHHhcC
Confidence 999999999985569999999999997643 33345667888999999999999999999999999875
No 73
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.61 E-value=9.8e-15 Score=138.60 Aligned_cols=116 Identities=24% Similarity=0.493 Sum_probs=95.3
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhhhcCCh
Q 002136 624 LSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFF 703 (961)
Q Consensus 624 f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f 703 (961)
|+.+.+.+..++++++|+.+....+.. .+ ...++..|+|++++++.++++++++|++|+|
T Consensus 1 w~~~~~~~~~~~l~R~~~~~~~~~~~~---~~-----------------~~~~~~~d~~~~~~~~~~i~~v~~~~~~~~f 60 (117)
T cd07959 1 FREEEANSAILRLERFYELAEELIETE---GE-----------------LEELTFIDRWLLSRLNRLIKETTEAYENMQF 60 (117)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhcc---CC-----------------ccccchhHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 677888899999999999876432211 11 0123567999999999999999999999999
Q ss_pred HHHHHHH-HHHHHHhhhHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHh
Q 002136 704 GDVGRET-YDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSL 772 (961)
Q Consensus 704 ~~A~~~i-~~f~~~~~~n~Yle~~K~~l~~~~~~~~~~~~~~~l~~vl~~~l~LL~Pf~P~itEeiw~~L 772 (961)
+.|++.+ ++|. +.+|+|++..++| ....++..+++.++++|+|||||+|||||+.|
T Consensus 61 ~~a~~~~~~~~~--~~~~~Y~~~~~~~-----------~~~~~~~~~l~~~~~lL~P~~P~~aeeiw~~~ 117 (117)
T cd07959 61 REALKEGLYELQ--NDLDWYRERGGAG-----------MNKDLLRRFIEVWTRLLAPFAPHLAEEIWHEL 117 (117)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHhCcc-----------chHHHHHHHHHHHHHHHcCcchHhHHHHHhhC
Confidence 9999997 7774 5899999988876 13458899999999999999999999999875
No 74
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=99.56 E-value=4.4e-14 Score=136.46 Aligned_cols=95 Identities=20% Similarity=0.257 Sum_probs=83.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhhHHHHHHhhhhhccCC-ChHHHHHHHHHHHHHHHHHH
Q 002136 676 APLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSE-YDSDAIIAQAVLLYIFENIL 754 (961)
Q Consensus 676 ~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~i~~f~~~~~~n~Yle~~K~~l~~~~-~~~~~~~~~~~l~~vl~~~l 754 (961)
+...|+|++++++.++++++++|++|+|+.|++.+++|+ ++||+|++..|||...++ +....+....++..+++.++
T Consensus 34 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~n~y~~~~kpw~~~~~~~~~~~~~~l~~~~~~l~~~~ 111 (129)
T cd07957 34 LTEEDEELLEEAEELLEEVAEAMEELEFRKALEEIMELA--RAANKYIDETAPWKLAKEEDPERLATVLYVLLELLRILA 111 (129)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHHhhhccCCCHHHHccCCHHHHHHHHHHHHHHHHHHH
Confidence 456799999999999999999999999999999999997 699999999999977653 33345566778888999999
Q ss_pred HHhCCCchhhHHHHHHHh
Q 002136 755 KLLHPFMPFVTEELWQSL 772 (961)
Q Consensus 755 ~LL~Pf~P~itEeiw~~L 772 (961)
++|+|||||+||+||+.|
T Consensus 112 ~lL~P~~P~~aeei~~~l 129 (129)
T cd07957 112 ILLSPFMPETAEKILDQL 129 (129)
T ss_pred HHhcCCCChHHHHHHHhC
Confidence 999999999999999875
No 75
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.54 E-value=7e-14 Score=132.59 Aligned_cols=117 Identities=23% Similarity=0.329 Sum_probs=93.9
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhhhcCCh
Q 002136 624 LSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFF 703 (961)
Q Consensus 624 f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f 703 (961)
||++.+.+.++|++|+||++++..+.. .+. . ........|+|++++++.+++++.++|++|+|
T Consensus 1 w~~~~~~~~~n~l~R~~~~~~~~~~~~---~~~-------------~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 63 (117)
T cd07958 1 WSDSGVEGAYRFLNRVWRLVTELAEAL---AAP-------------A-AAAELSEEDKELRRKLHKTIKKVTEDIERLRF 63 (117)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHhhc---ccc-------------c-cccccchhhHHHHHHHHHHHHHHHHHHhCCcc
Confidence 678899999999999999986543221 110 0 00123457999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHh
Q 002136 704 GDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSL 772 (961)
Q Consensus 704 ~~A~~~i~~f~~~~~~n~Yle~~K~~l~~~~~~~~~~~~~~~l~~vl~~~l~LL~Pf~P~itEeiw~~L 772 (961)
++|++.+++|+ +.+|.|++..+| ...++..+++.++++|+|||||+||+||+.|
T Consensus 64 ~~a~~~i~~~~--~~~n~~~~~~~p-------------~~~~~~~~l~~~~~lL~P~~P~~aeei~~~l 117 (117)
T cd07958 64 NTAIAALMELV--NALYKYKKKDAQ-------------HAAVLREALETLVLLLAPFAPHIAEELWEEL 117 (117)
T ss_pred hHHHHHHHHHH--HHHHHhhccccc-------------hHHHHHHHHHHHHHHHcccchHHHHHHHhhC
Confidence 99999999998 457888754332 4678899999999999999999999999875
No 76
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=99.52 E-value=3.8e-14 Score=160.19 Aligned_cols=148 Identities=24% Similarity=0.276 Sum_probs=92.8
Q ss_pred hCCCCCCCCCCCCCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHH---HH--
Q 002136 77 SQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEK---ML-- 151 (961)
Q Consensus 77 ~~~~f~~~~~~~~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek---~l-- 151 (961)
+..-| ......+++.+|-..-|||||+|||||+++.+++|+++|-.+..||+|.-..-..+.|..+-..+.. ..
T Consensus 8 ~~~~y-~~~~~~~~kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~ 86 (354)
T PF00750_consen 8 KGEEY-GSEKGKGKKVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQIGLLAASYKKFGDE 86 (354)
T ss_dssp HGGGT-T--TTTSEEEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHHHHHHHHHHH
T ss_pred cchhc-ccccCCCCEEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHHHHHHHHHHHhhhhh
Confidence 33445 3233456789999999999999999999999999999999999999999988888888754432210 00
Q ss_pred ----------------------HHcCC---Ccccc---CHHHHHH-------HHHHHHHHHHHHHHHHHHHhCCccC-CC
Q 002136 152 ----------------------AAEGI---KRVEL---SRDEFTK-------RVWEWKEKYGGTITSQIKRLGASCD-WT 195 (961)
Q Consensus 152 ----------------------~~~g~---~~~~~---~~~~f~~-------~~~~~~~~~~~~i~~~l~~lG~s~D-w~ 195 (961)
..... ...++ .++.|.+ ....|.....+.+++++.++|+.+| |.
T Consensus 87 ~~~~~~~~~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~~~~~~~~~~k~~l~~l~i~fDv~~ 166 (354)
T PF00750_consen 87 ELLEEDPIKHLEDLYVGANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFRELWQKYILEWSKETLQRLYIRFDVWF 166 (354)
T ss_dssp HTSHSSCHHHHHHHHHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHTT---SEEE
T ss_pred hhcccccccchhhhhhhhhhhhhhhhhccccccccccccceeeeecccccHHHHHHHHHHHHHHHHHHHHHHHHHhCcCc
Confidence 00100 01111 0111111 1223444477788999999999999 65
Q ss_pred CCccCCChhhHHHHHHHHHHHHhcCceEEcCee
Q 002136 196 RERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYM 228 (961)
Q Consensus 196 r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~ 228 (961)
.+ .+-.+...+..++.+|.++|++|+.+..
T Consensus 167 ~E---~Es~~~~~v~~vl~~L~e~g~~~~~dGa 196 (354)
T PF00750_consen 167 DE---SESFYSGKVDEVLERLKEKGLLYESDGA 196 (354)
T ss_dssp EH---CHHHHTTHHHHHHHHHHCTTTEEEETTE
T ss_pred cc---chhhhhhHHHHHHHHHHhCCcEEecCCc
Confidence 43 2233567789999999999999876544
No 77
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=99.48 E-value=7.8e-14 Score=117.34 Aligned_cols=66 Identities=42% Similarity=0.636 Sum_probs=61.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 889 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLR 954 (961)
Q Consensus 889 d~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~ 954 (961)
|+++|++||+|+++++++++++++++|+||+|++|||++||+.+++|+++++.+++.+++.|+.|+
T Consensus 1 D~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~Lk 66 (66)
T PF10458_consen 1 DVEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQLK 66 (66)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 789999999999999999999999999999999999999999999999999999999999999874
No 78
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=99.20 E-value=2.2e-10 Score=108.10 Aligned_cols=116 Identities=22% Similarity=0.269 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhhhcCChHHH
Q 002136 627 ERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDV 706 (961)
Q Consensus 627 ~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A 706 (961)
+.+.+..+++|++||+++++..+..+..+. . ........|+|++++++.++++++++|++|+|+.|
T Consensus 2 ~~v~~~~~~~n~~~r~~~~~~~~~~~~~~~-------------~-~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~a 67 (117)
T cd07375 2 ERLKQARAFLNRLYRLLSFFRKALGGTQPK-------------W-DNELLEEADRELLARLQEFIKRTTNALEALDPTTA 67 (117)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-------------c-ChhhcCHhhHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 567788899999999999876654332110 0 00112456999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCc
Q 002136 707 GRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFM 761 (961)
Q Consensus 707 ~~~i~~f~~~~~~n~Yle~~K~~l~~~~~~~~~~~~~~~l~~vl~~~l~LL~Pf~ 761 (961)
++.+++|++ ++ |+|++..|||.+.+ ........++..++..++++|+|||
T Consensus 68 ~~~i~~~~~-~~-n~y~~~~~pw~~~~---~~~~~~~~~~~~~l~~l~~lL~P~~ 117 (117)
T cd07375 68 VQELFKFTN-EL-NWYLDELKPALQTE---ELREAVLAVLRAALVVLTKLLAPFT 117 (117)
T ss_pred HHHHHHHHH-hc-cHHHHHhhHHHcCc---hhHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999984 33 99999999998764 2334566788999999999999997
No 79
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=99.18 E-value=3.8e-11 Score=132.21 Aligned_cols=102 Identities=19% Similarity=0.315 Sum_probs=63.2
Q ss_pred CCCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCC--------chHHHHHHHHHHHcCCCcc
Q 002136 88 GSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAG--------IATQLVVEKMLAAEGIKRV 159 (961)
Q Consensus 88 ~~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~G--------l~~q~~vek~l~~~g~~~~ 159 (961)
+++.+++-++ -.|+|.+|||+++..+..|+++|-.|.+|++|.++..+|..- +|-+ ..++. .|.+..
T Consensus 21 ~~~~~v~~sG-~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~-~~~~y---lg~Plt 95 (360)
T PF01921_consen 21 GKEPYVFASG-ISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNP-ELEKY---LGKPLT 95 (360)
T ss_dssp --SEEEEEEE-E--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC--CCCC---TTSBTT
T ss_pred CCccEEEecC-CCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChH-HHHHh---cCCccc
Confidence 4567888888 789999999999999999999999999999999999999853 2211 11111 132211
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCC
Q 002136 160 ELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTR 196 (961)
Q Consensus 160 ~~~~~~f~~~~~~~~~~~~~~i~~~l~~lG~s~Dw~r 196 (961)
.+. +-|- .+..|++.+...+.+.|..||+.+++-+
T Consensus 96 ~VP-dP~G-~~~SyaeH~~~~~~~~L~~~gie~e~~s 130 (360)
T PF01921_consen 96 RVP-DPFG-CHESYAEHFNAPFEEFLDEFGIEYEFIS 130 (360)
T ss_dssp TSB--TTS-SSSCHHHHHHHHHHHHHHTTT---EEEE
T ss_pred cCC-CCCC-CCccHHHHHHHHHHHHHHHcCCceEEEe
Confidence 111 1111 1456889999999999999999888543
No 80
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.16 E-value=6.3e-11 Score=116.83 Aligned_cols=76 Identities=18% Similarity=0.210 Sum_probs=62.8
Q ss_pred eCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHH
Q 002136 95 SMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWK 174 (961)
Q Consensus 95 ~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~~~ 174 (961)
+.+.|||||.|||||++++++.|+++||+|++|++|.++.|+|++|.++.... .+.|.+++ +|+
T Consensus 2 ~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a----~~~~~~~~------------~~~ 65 (143)
T cd00802 2 TFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPA----NKKGENAK------------AFV 65 (143)
T ss_pred EecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHH----HhcCCCHH------------HHH
Confidence 56779999999999999999999999999999999999999999999865443 33455443 445
Q ss_pred HHHHHHHHHHHH
Q 002136 175 EKYGGTITSQIK 186 (961)
Q Consensus 175 ~~~~~~i~~~l~ 186 (961)
+.+.+.++++++
T Consensus 66 ~~~~~~~~~~~~ 77 (143)
T cd00802 66 ERWIERIKEDVE 77 (143)
T ss_pred HHHHHHHHHHHH
Confidence 677777788777
No 81
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.03 E-value=3.4e-08 Score=116.01 Aligned_cols=96 Identities=29% Similarity=0.355 Sum_probs=69.0
Q ss_pred EEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 002136 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (961)
Q Consensus 93 ~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~ 172 (961)
+++=.+|.|||.||||||++.++.+.+|| +..|.-++.+--||.- + .+.
T Consensus 102 V~tRFaPsPtG~LHIGharaalln~~~Ar--~~~G~~iLRidDTDpk---~-------------~R~------------- 150 (567)
T PRK04156 102 VVMRFAPNPSGPLHLGHARAAILNDEYAK--MYGGKFILRFEDTDPR---T-------------KRP------------- 150 (567)
T ss_pred EEEEeCCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEeEccCCCC---c-------------ccc-------------
Confidence 44556799999999999999999999999 3345444444444321 0 010
Q ss_pred HHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCceEE
Q 002136 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (961)
Q Consensus 173 ~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~ 224 (961)
..++.+.|.++|+.||+ +|+..+++ .+|.........+|.++|++|.
T Consensus 151 -~~e~~~~I~edL~wLGl--~wD~~~~q--Sdr~~~y~~~a~~Li~~G~AY~ 197 (567)
T PRK04156 151 -DPEAYDMILEDLKWLGV--KWDEVVIQ--SDRLEIYYEYARKLIEMGGAYV 197 (567)
T ss_pred -hHHHHHHHHHHHHHcCC--CCCCccCc--ccCHHHHHHHHHHHHHcCCCcc
Confidence 13455789999999998 66665443 4566777888999999999975
No 82
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=5.4e-08 Score=110.20 Aligned_cols=100 Identities=19% Similarity=0.300 Sum_probs=75.2
Q ss_pred CCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCC--------chHHHHHHHHHHHcCCCcccc
Q 002136 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAG--------IATQLVVEKMLAAEGIKRVEL 161 (961)
Q Consensus 90 ~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~G--------l~~q~~vek~l~~~g~~~~~~ 161 (961)
+.+++-++ -.|+|.+|||+++-.+.+|+++|-.|-+|+.|.+++=+|..- +|-+...++.+ |.+...+
T Consensus 19 ~~~~v~tG-isPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Yl---g~Plt~I 94 (521)
T COG1384 19 DEYVVATG-ISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYL---GMPLTEI 94 (521)
T ss_pred CcEEEecC-cCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHc---CCccccC
Confidence 67999898 889999999999999999999999999999999999998863 23222333333 4433222
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCC
Q 002136 162 SRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWT 195 (961)
Q Consensus 162 ~~~~f~~~~~~~~~~~~~~i~~~l~~lG~s~Dw~ 195 (961)
. +-|- .|..|++.+...+..-|..+|+.+.|-
T Consensus 95 P-dP~G-~~~Sya~hf~~~f~~~l~~~Gi~~E~~ 126 (521)
T COG1384 95 P-DPFG-CCDSYAEHFLRPFEEFLDEFGIEVEFV 126 (521)
T ss_pred C-CCcc-ccchHHHHHHHHHHHHHHhcCCceEEE
Confidence 1 0011 356788889999999999999887754
No 83
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=98.82 E-value=2e-07 Score=108.99 Aligned_cols=94 Identities=26% Similarity=0.283 Sum_probs=65.9
Q ss_pred eCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHH
Q 002136 95 SMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWK 174 (961)
Q Consensus 95 ~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~~~ 174 (961)
+=.+|-|||.|||||+++.++.-.+|| ...|.=++.+=-||.. +. .
T Consensus 4 ~RfAPsPtG~lHiG~~rtal~n~l~Ar--~~~G~~iLRieDtD~~------------------R~--------------~ 49 (470)
T TIGR00464 4 TRFAPSPTGYLHIGGARTALFNYLFAK--HTGGEFILRIEDTDLE------------------RN--------------I 49 (470)
T ss_pred EeeCCCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEEeCcCCCc------------------cC--------------C
Confidence 445799999999999999999999998 3456555555444431 10 1
Q ss_pred HHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCceEEc
Q 002136 175 EKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (961)
Q Consensus 175 ~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~ 225 (961)
.++.+.|.++|+.||+..| ..+|+.++ +.+.-+.+..+|.++|++|..
T Consensus 50 ~~~~~~i~~~L~wlGl~~d-e~~~~QS~--r~~~y~~~~~~L~~~g~aY~C 97 (470)
T TIGR00464 50 EEAEEAILEGLKWLGISWD-EGPYYQSQ--RLDIYKKYAKELLEEGLAYRC 97 (470)
T ss_pred hHHHHHHHHHHHHCCCCCC-CCeeehhC--CHHHHHHHHHHHHHcCCEEec
Confidence 3567789999999997544 14455433 334456778899999999863
No 84
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=98.71 E-value=6.3e-07 Score=104.90 Aligned_cols=95 Identities=26% Similarity=0.249 Sum_probs=67.8
Q ss_pred EEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 002136 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (961)
Q Consensus 93 ~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~ 172 (961)
+.+=.+|-|||.|||||+++.++.-.+||- ..|.=++.+=-||.. +.
T Consensus 5 v~~RfAPSPtG~lHiG~~rtal~n~l~Ar~--~~G~fiLRieDtD~~------------------R~------------- 51 (476)
T PRK01406 5 VRTRFAPSPTGYLHIGGARTALFNWLFARH--HGGKFILRIEDTDQE------------------RS------------- 51 (476)
T ss_pred eeEEeCCCCCCcccHHHHHHHHHHHHHHHH--cCCEEEEEeCcCCCC------------------CC-------------
Confidence 345557999999999999999999988886 356555555444431 11
Q ss_pred HHHHHHHHHHHHHHHhCCccCCCCC--------ccCCChhhHHHHHHHHHHHHhcCceEEc
Q 002136 173 WKEKYGGTITSQIKRLGASCDWTRE--------RFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (961)
Q Consensus 173 ~~~~~~~~i~~~l~~lG~s~Dw~r~--------~~T~d~~~~~~v~~~F~~L~~~GlIy~~ 225 (961)
...+.+.|.++|+.||+..| .. |+.+ ++...-++...+|.++|++|+.
T Consensus 52 -~~~~~~~i~~~L~wlGl~~D--e~p~~~~~gpy~QS--~r~~~y~~~~~~L~~~g~aY~C 107 (476)
T PRK01406 52 -TEEAEEAILEGLKWLGLDWD--EGPDGGPYGPYRQS--ERLDIYKEYAEQLLEEGKAYYC 107 (476)
T ss_pred -ChHHHHHHHHHHHHCCCCCC--CCCccCCCCceehh--cCHHHHHHHHHHHHHcCCeeec
Confidence 14567889999999997555 32 4432 3345667888899999999973
No 85
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=98.63 E-value=6.5e-06 Score=96.93 Aligned_cols=96 Identities=25% Similarity=0.329 Sum_probs=70.6
Q ss_pred EEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHH
Q 002136 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVW 171 (961)
Q Consensus 92 f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~ 171 (961)
-+++=.||.|||.||||||++.++.+.+|| ...|.-++..--||. ++.
T Consensus 93 ~vvtRFaPsPtG~LHiGharaalln~~~Ar--~~~G~~iLRidDTDp------------------~R~------------ 140 (560)
T TIGR00463 93 EVVMRFAPNPSGPLHIGHARAAILNQYFAK--KYKGKLIIRFDDTDP------------------RRV------------ 140 (560)
T ss_pred eeEEEeCCCCCCCccHHHHHHHHHHHHHHH--hcCCEEEEEeCcCCc------------------ccc------------
Confidence 467777899999999999999999999997 334544444433332 011
Q ss_pred HHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCceEEc
Q 002136 172 EWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (961)
Q Consensus 172 ~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~ 225 (961)
..++.+.|.++|+.||+. |+.. +...+|......+..+|.++|+.|..
T Consensus 141 --~~e~~~~I~edL~wLGi~--~d~~--~~qSd~~~~y~~~a~~Li~~G~AY~C 188 (560)
T TIGR00463 141 --KPEAYDMILEDLDWLGVK--GDEV--VYQSDRIEEYYDYCRKLIEMGKAYVC 188 (560)
T ss_pred --cHHHHHHHHHHHHHcCCC--CCcc--ccccccHHHHHHHHHHHHHcCCceee
Confidence 135678899999999987 5444 34456777788999999999999764
No 86
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=98.56 E-value=3.6e-06 Score=96.83 Aligned_cols=93 Identities=31% Similarity=0.385 Sum_probs=67.6
Q ss_pred EeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 002136 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (961)
Q Consensus 94 i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~~ 173 (961)
.+=.+|-|||.||||||++.+..-.+||-+ .|.=++.+=-||.. + +
T Consensus 4 r~RFAPSPTG~lHiG~artAL~n~l~Ar~~--gG~fiLRIEDTD~~------------------R---s----------- 49 (445)
T PRK12558 4 ITRFAPSPTGYLHVGNARTALLNWLYARKH--GGKFILRIDDTDLE------------------R---S----------- 49 (445)
T ss_pred eEEeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEeccCCcc------------------c---c-----------
Confidence 344579999999999999999888888753 46555555455420 0 0
Q ss_pred HHHHHHHHHHHHHHhCCccC-CCCCccCCChhhHHHHHHHHHHHHhcCceEEc
Q 002136 174 KEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (961)
Q Consensus 174 ~~~~~~~i~~~l~~lG~s~D-w~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~ 225 (961)
.+.+.+.|.++|+.||+.+| |. ...+....++.+..+|.++|++|+.
T Consensus 50 ~~~~~~~I~e~L~wLGI~~De~y-----~QSer~~~y~~~~e~L~e~G~AY~C 97 (445)
T PRK12558 50 KQEYADAIAEDLKWLGINWDRTF-----RQSDRFDRYDEAAEKLKAAGRLYPC 97 (445)
T ss_pred hHHHHHHHHHHHHHcCCCCCccc-----cHHHHHHHHHHHHHHHHHCCCEEEe
Confidence 14567789999999999877 32 2233445789999999999999863
No 87
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=98.56 E-value=5.2e-06 Score=95.12 Aligned_cols=91 Identities=16% Similarity=0.223 Sum_probs=66.6
Q ss_pred CCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHH
Q 002136 97 PPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEK 176 (961)
Q Consensus 97 ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~ 176 (961)
..|.|||.||||||++.++.-.+||- ..|.=++.+=-||.. +. ..+
T Consensus 4 FAPSPTG~LHiG~artAL~n~l~Ar~--~gG~fiLRiEDTD~~------------------R~--------------~~e 49 (433)
T PRK12410 4 FAPSPTGDMHIGNLRAAIFNYIVAKQ--QNEDFLIRIEDTDKE------------------RN--------------IEG 49 (433)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHH--cCCEEEEEeCcCCCC------------------cC--------------ChH
Confidence 36999999999999999999998875 456666666555531 11 135
Q ss_pred HHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCceEEc
Q 002136 177 YGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (961)
Q Consensus 177 ~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~ 225 (961)
+.+.|.+.|+.||+. |+..|+.++ +...-+++..+|.++|.+|..
T Consensus 50 ~~~~I~~~L~WlGl~--wDe~y~QSe--R~~~Y~~~a~~Li~~G~AY~C 94 (433)
T PRK12410 50 KDKEILEILNLFGIS--WDKLVYQSE--NLKFHRQMAEKLLSEKKAFAC 94 (433)
T ss_pred HHHHHHHHHHHcCCC--CCCCeehhc--cHHHHHHHHHHHHHcCCeeee
Confidence 667899999999975 556665433 334567788999999999863
No 88
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=98.45 E-value=3.6e-05 Score=89.83 Aligned_cols=95 Identities=27% Similarity=0.408 Sum_probs=71.2
Q ss_pred EEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 002136 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (961)
Q Consensus 93 ~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~ 172 (961)
+++=.||.|||.||||||++.++...+||- ..|.-++.+=-||- .+.
T Consensus 12 v~tRFAPsPtG~LHiGharaAlln~l~Ar~--~gG~~iLRiEDTDp------------------~R~------------- 58 (523)
T PLN03233 12 IVTRFPPEPSGYLHIGHAKAALLNDYYARR--YKGRLILRFDDTNP------------------SKE------------- 58 (523)
T ss_pred EEEeeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEECCCCC------------------Ccc-------------
Confidence 667778999999999999999999999985 35655555533332 111
Q ss_pred HHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCceEEc
Q 002136 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (961)
Q Consensus 173 ~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~ 225 (961)
..++.+.|.++|+.||+. |+..+++ .+|-..-++...+|.++|++|..
T Consensus 59 -~~e~~~~I~~dL~WLGl~--wD~~~~q--Sdr~~~y~~~a~~Li~~G~AY~C 106 (523)
T PLN03233 59 -KAEFEESIIEDLGKIEIK--PDSVSFT--SDYFEPIRCYAIILIEEGLAYMD 106 (523)
T ss_pred -chHHHHHHHHHHHHhCCC--CCCCccc--cccHHHHHHHHHHHHHcCCeEec
Confidence 145778899999999976 5555444 45666778899999999999874
No 89
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=98.43 E-value=6.3e-05 Score=88.08 Aligned_cols=96 Identities=24% Similarity=0.359 Sum_probs=66.8
Q ss_pred EEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 002136 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (961)
Q Consensus 93 ~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~ 172 (961)
+++=.||.|||.||||||++.++...+||. ..|.-++..=-||-. +.
T Consensus 30 v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~--~~G~~iLRieDTd~~------------------r~------------- 76 (554)
T PRK05347 30 VHTRFPPEPNGYLHIGHAKSICLNFGLAQD--YGGKCNLRFDDTNPE------------------KE------------- 76 (554)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEECCCCCC------------------cC-------------
Confidence 566778999999999999999999999985 356555554333321 11
Q ss_pred HHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCceEEc
Q 002136 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (961)
Q Consensus 173 ~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~ 225 (961)
..++.+.|.++|+.||+..| ...++++ +|-......-.+|.++|++|..
T Consensus 77 -~~e~~~~I~~dL~wLGi~~d-~~~~~qS--~r~~~~y~~a~~Li~~G~AY~c 125 (554)
T PRK05347 77 -DQEYVDSIKEDVRWLGFDWS-GELRYAS--DYFDQLYEYAVELIKKGKAYVD 125 (554)
T ss_pred -ChHHHHHHHHHHHHcCCCCC-CCceeee--cCHHHHHHHHHHHHHcCCEeeC
Confidence 14567889999999998665 2344443 3333344555799999999874
No 90
>PLN02907 glutamate-tRNA ligase
Probab=98.38 E-value=5.4e-05 Score=92.67 Aligned_cols=95 Identities=25% Similarity=0.400 Sum_probs=71.1
Q ss_pred EEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHH
Q 002136 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVW 171 (961)
Q Consensus 92 f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~ 171 (961)
=+++=.||.|||.||||||++.++...+|| +..|.-++..=-||- ++.
T Consensus 213 ~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar--~~~G~~iLR~eDTdp------------------~r~------------ 260 (722)
T PLN02907 213 KVCTRFPPEPSGYLHIGHAKAALLNQYFAR--RYKGKLIVRFDDTNP------------------SKE------------ 260 (722)
T ss_pred ceEEeeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEecCCCC------------------CcC------------
Confidence 367777899999999999999999999998 445655555433332 111
Q ss_pred HHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCceEE
Q 002136 172 EWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (961)
Q Consensus 172 ~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~ 224 (961)
..++.+.|.++|+.||+.. +..+++ .+|-..-.+...+|.++|++|.
T Consensus 261 --~~e~~~~I~~dl~wLG~~~--d~~~~q--S~r~~~y~~~a~~Li~~G~aY~ 307 (722)
T PLN02907 261 --SDEFVENILKDIETLGIKY--DAVTYT--SDYFPQLMEMAEKLIKEGKAYV 307 (722)
T ss_pred --ChHHHHHHHHHHHHcCCCC--CCcccc--cccHHHHHHHHHHHHHcCCeee
Confidence 1457788999999999754 455444 4455677889999999999986
No 91
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=98.29 E-value=7.8e-05 Score=91.07 Aligned_cols=96 Identities=24% Similarity=0.321 Sum_probs=69.4
Q ss_pred EEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 002136 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (961)
Q Consensus 93 ~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~ 172 (961)
+++=.||.|||.||||||++.++...+||- ..|.-.+..=-||- .+.
T Consensus 32 v~tRFaPsPtG~lHiGhar~alln~~~A~~--~~G~~~LR~eDTd~------------------~r~------------- 78 (771)
T PRK14703 32 VVTRFPPEPNGYLHIGHAKSILLNFGIARD--YGGRCHLRMDDTNP------------------ETE------------- 78 (771)
T ss_pred eEEEeCcCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEeCCCCC------------------CcC-------------
Confidence 677778999999999999999999999974 34654444433332 111
Q ss_pred HHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCceEEc
Q 002136 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (961)
Q Consensus 173 ~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~ 225 (961)
..++.+.|.++|+.||+..|.. .+++ .+|...-.....+|.++|++|..
T Consensus 79 -~~e~~~~I~~dl~wLG~~wd~~-~~~q--S~~~~~y~~~a~~Li~~G~aY~c 127 (771)
T PRK14703 79 -DTEYVEAIKDDVRWLGFDWGEH-LYYA--SDYFERMYAYAEQLIKMGLAYVD 127 (771)
T ss_pred -ChHHHHHHHHHHHHcCCCCCCC-ceEe--ecCHHHHHHHHHHHHHcCCcccC
Confidence 1457788999999999765522 2443 45666778888999999999763
No 92
>PLN02627 glutamyl-tRNA synthetase
Probab=98.27 E-value=5.9e-05 Score=88.14 Aligned_cols=94 Identities=24% Similarity=0.327 Sum_probs=68.4
Q ss_pred EEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 002136 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (961)
Q Consensus 93 ~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~ 172 (961)
+.+=.+|-|||.||||||++.++.-.+|| +..|.=++.+=-||.. +.
T Consensus 46 vr~RFAPSPTG~LHiG~aRtAL~n~l~Ar--~~gG~fiLRIEDTD~~------------------R~------------- 92 (535)
T PLN02627 46 VRVRFAPSPTGNLHVGGARTALFNYLFAR--SKGGKFVLRIEDTDLA------------------RS------------- 92 (535)
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH--HhCCEEEEEeCcCCCC------------------CC-------------
Confidence 55555699999999999999999999998 5567666666555531 11
Q ss_pred HHHHHHHHHHHHHHHhCCccCCCC---------CccCCChhhHHHHHHHHHHHHhcCceEE
Q 002136 173 WKEKYGGTITSQIKRLGASCDWTR---------ERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (961)
Q Consensus 173 ~~~~~~~~i~~~l~~lG~s~Dw~r---------~~~T~d~~~~~~v~~~F~~L~~~GlIy~ 224 (961)
+.++.+.|.++|+.||+. |+. +|+-+ ++.+.-..+..+|.++|++|.
T Consensus 93 -~~e~~~~I~~~L~WLGl~--wDegp~~gg~~gpy~QS--eR~~~Y~~~a~~Li~~G~AY~ 148 (535)
T PLN02627 93 -TKESEEAVLRDLKWLGLD--WDEGPDVGGEYGPYRQS--ERNAIYKQYAEKLLESGHVYP 148 (535)
T ss_pred -ChHHHHHHHHHHHHcCCC--CCcCcccCCCCCCeeee--ccHHHHHHHHHHHHHcCCeee
Confidence 145677899999999965 543 23322 234556788889999999986
No 93
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=98.25 E-value=3e-05 Score=90.38 Aligned_cols=94 Identities=28% Similarity=0.378 Sum_probs=68.8
Q ss_pred EeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 002136 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (961)
Q Consensus 94 i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~~ 173 (961)
.+=..|-|||.||||||++.++.-.+|| +..|.=++.+=-||.. +.
T Consensus 6 rtRFAPSPTG~lHiG~artAL~n~l~Ar--~~gG~fiLRIEDTD~~------------------R~-------------- 51 (513)
T PRK14895 6 ITRFAPSPTGFLHIGSARTALFNYLFAR--HHNGKFLLRIEDTDKE------------------RS-------------- 51 (513)
T ss_pred eEeeCCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEECCCCcc------------------cc--------------
Confidence 3445699999999999999999999999 4567766666555430 10
Q ss_pred HHHHHHHHHHHHHHhCCccCCC-CCccCCChhhHHHHHHHHHHHHhcCceEEc
Q 002136 174 KEKYGGTITSQIKRLGASCDWT-RERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (961)
Q Consensus 174 ~~~~~~~i~~~l~~lG~s~Dw~-r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~ 225 (961)
..++.+.|.+.|+.||+. |+ .+|+.++ +...-+....+|.++|++|..
T Consensus 52 ~~~~~~~i~~~L~WLGl~--wDe~py~QSe--R~~~Y~~~a~~Li~~G~AY~C 100 (513)
T PRK14895 52 TKEAVEAIFSGLKWLGLD--WNGEVIFQSK--RNNLYKEAALKLLQNGKAYYC 100 (513)
T ss_pred ChHHHHHHHHHHHHcCCC--CCCCceeEeC--cHHHHHHHHHHHHHcCCeEEe
Confidence 135677899999999975 54 4555433 334567888999999999863
No 94
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=98.14 E-value=5.6e-06 Score=87.47 Aligned_cols=94 Identities=21% Similarity=0.237 Sum_probs=66.8
Q ss_pred eCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHH
Q 002136 95 SMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWK 174 (961)
Q Consensus 95 ~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~~~ 174 (961)
+=.+|.|||.|||||+++.++.++++| ++++.|+.=+|+.--+. ++ . .
T Consensus 4 ~RfaPsPtG~lHiG~~rtal~~~l~Ar-----~~~G~~ilRieDtD~~r------------~~----~-----------~ 51 (240)
T cd09287 4 MRFAPNPNGPLHLGHARAAILNGEYAK-----MYGGKFILRFDDTDPRT------------KR----P-----------D 51 (240)
T ss_pred EeCCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeeCcCCCCc------------cc----c-----------h
Confidence 345799999999999999999999999 45555555444432110 00 1 1
Q ss_pred HHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCceEE
Q 002136 175 EKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (961)
Q Consensus 175 ~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~ 224 (961)
..+.+.|.++|+.||+ +|+..++. .++.+..+++..+|.++|++|.
T Consensus 52 ~~~~~~i~~dL~wLGl--~~d~~~~q--S~r~~~y~~~~~~Li~~G~aY~ 97 (240)
T cd09287 52 PEAYDMIPEDLEWLGV--KWDEVVIA--SDRIELYYEYARKLIEMGGAYV 97 (240)
T ss_pred HHHHHHHHHHHHHcCC--CCCCccch--hccHHHHHHHHHHHHHcCCccc
Confidence 3445568999999998 66655443 3455666778899999999997
No 95
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=0.00023 Score=78.33 Aligned_cols=59 Identities=20% Similarity=0.379 Sum_probs=49.0
Q ss_pred CCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeec-----CCCCCCCchHHHHHH
Q 002136 89 SDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWL-----PGTDHAGIATQLVVE 148 (961)
Q Consensus 89 ~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~-----~G~D~~Gl~~q~~ve 148 (961)
.++.++....||.--.+|+||+++.+++|.++|-....|++|+.. ||| .+|+-|....+
T Consensus 187 ~KrvlVDFSSPNIAKeMHVGHLRSTIIGdsl~RllE~~~~dVlR~NHvGDWGT-QFGMLIahL~d 250 (656)
T KOG4426|consen 187 VKRVLVDFSSPNIAKEMHVGHLRSTIIGDSLCRLLEFSGVDVLRRNHVGDWGT-QFGMLIAHLFD 250 (656)
T ss_pred eeeEEEecCCCcHHHHhhhhhhhhhhHhHHHHHHHHhcCcceEeeccccchHH-HHHHHHHHHHH
Confidence 577888889999999999999999999999999999999999986 444 35655544433
No 96
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=97.71 E-value=0.00011 Score=79.56 Aligned_cols=91 Identities=22% Similarity=0.232 Sum_probs=67.6
Q ss_pred CCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHH
Q 002136 97 PPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEK 176 (961)
Q Consensus 97 ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~ 176 (961)
.+|.|||.|||||+++.++...+|| +..|.=++.+==||.. +. ..+
T Consensus 5 FAPSPtG~lHiG~~rtAL~n~l~Ar--~~gG~~iLRiEDtD~~------------------R~--------------~~~ 50 (272)
T TIGR03838 5 FAPSPSGPLHFGSLVAALGSYLDAR--AHGGRWLVRIEDLDPP------------------RE--------------VPG 50 (272)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEeCcCCCC------------------CC--------------ChH
Confidence 4699999999999999999999999 4467666666555541 10 134
Q ss_pred HHHHHHHHHHHhCCccCCCC-CccCCChhhHHHHHHHHHHHHhcCceEEc
Q 002136 177 YGGTITSQIKRLGASCDWTR-ERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (961)
Q Consensus 177 ~~~~i~~~l~~lG~s~Dw~r-~~~T~d~~~~~~v~~~F~~L~~~GlIy~~ 225 (961)
+.+.|.++|+.||+..| . .++. .++.+.-+.+..+|.++|++|..
T Consensus 51 ~~~~I~~dL~wLGl~wD--e~~~~Q--S~r~~~Y~~~~~~L~~~G~aY~C 96 (272)
T TIGR03838 51 AADDILRTLEAYGLHWD--GEVVYQ--SQRHALYQAALDRLLAAGLAYPC 96 (272)
T ss_pred HHHHHHHHHHHcCCCCC--CCeeee--eCCHHHHHHHHHHHHHcCCEEec
Confidence 66789999999997655 3 2333 34556678888999999999864
No 97
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=97.57 E-value=0.00032 Score=82.90 Aligned_cols=93 Identities=26% Similarity=0.489 Sum_probs=69.4
Q ss_pred EEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 002136 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (961)
Q Consensus 93 ~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~ 172 (961)
+++=.||.|||.||||||++.++...+||-. .|.-+|.+=-||- .+.
T Consensus 53 v~tRFAPsPtGyLHIGharaAllN~l~Ar~~--gG~~iLRiEDTDp------------------~R~------------- 99 (601)
T PTZ00402 53 VVTRFPPEASGFLHIGHAKAALINSMLADKY--KGKLVFRFDDTNP------------------SKE------------- 99 (601)
T ss_pred eEEeeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEEcCCCC------------------ccc-------------
Confidence 6677789999999999999999999999853 5655554433332 111
Q ss_pred HHHHHHHHHHHHHHHhCCccCCCC-CccCCChhhHHHHHHHHHHHHhcCceE
Q 002136 173 WKEKYGGTITSQIKRLGASCDWTR-ERFTLDEQLSRAVVEAFIRLHEKGLIY 223 (961)
Q Consensus 173 ~~~~~~~~i~~~l~~lG~s~Dw~r-~~~T~d~~~~~~v~~~F~~L~~~GlIy 223 (961)
..++.+.|.++|+.||+ +|+. .+++ .+|-..-.++..+|.++|++|
T Consensus 100 -~~e~~d~IleDL~WLGl--~wDe~~~~Q--Sdr~d~y~e~a~~Li~~G~AY 146 (601)
T PTZ00402 100 -KEHFEQAILDDLATLGV--SWDVGPTYS--SDYMDLMYEKAEELIKKGLAY 146 (601)
T ss_pred -CHHHHHHHHHHHHHCCC--CCCCceeec--cccHHHHHHHHHHHHHcCCEE
Confidence 14677889999999997 5654 4444 456677788999999999997
No 98
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=97.57 E-value=0.00029 Score=82.56 Aligned_cols=95 Identities=23% Similarity=0.244 Sum_probs=68.7
Q ss_pred EEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 002136 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (961)
Q Consensus 93 ~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~ 172 (961)
+++=.||.|||.||||||++.++...+||. ..|.-++.+=-||-. +.
T Consensus 52 v~tRFaPsPtG~LHiGharaalln~~~Ar~--~gG~~iLRiEDTDp~------------------r~------------- 98 (574)
T PTZ00437 52 PYFRFPPEPNGFLHIGHAKSMNLNFGSARA--HGGKCYLRYDDTNPE------------------TE------------- 98 (574)
T ss_pred EEEEeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEECCCCcc------------------cc-------------
Confidence 456667999999999999999999999985 346555554333320 10
Q ss_pred HHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCceEEc
Q 002136 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (961)
Q Consensus 173 ~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~ 225 (961)
..++.+.|.++|+.||+..| ..+ ...+|.+...+...+|.++|++|..
T Consensus 99 -~~e~~~~I~~dL~wLGi~~D--~~~--~qS~y~~~~ye~A~~Li~~G~AY~C 146 (574)
T PTZ00437 99 -EQVYIDAIMEMVKWMGWKPD--WVT--FSSDYFDQLHEFAVQLIKDGKAYVD 146 (574)
T ss_pred -ChHHHHHHHHHHHHcCCCCC--CCC--cCchhHHHHHHHHHHHHHcCCEEEc
Confidence 14577889999999997654 443 3345666667777899999999874
No 99
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=97.51 E-value=0.0003 Score=82.41 Aligned_cols=96 Identities=24% Similarity=0.368 Sum_probs=67.0
Q ss_pred EeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 002136 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (961)
Q Consensus 94 i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~~ 173 (961)
++=.||.|||.||||||++.++...+||- ..|.-++.+=-||- .+.
T Consensus 2 ~tRFaPsPtG~LHiG~ar~al~n~~~A~~--~~G~~iLRieDTd~------------------~r~-------------- 47 (522)
T TIGR00440 2 HTRFPPEPNGYLHIGHAKSICLNFGYAKY--YNGTCNLRFDDTNP------------------VKE-------------- 47 (522)
T ss_pred eEecCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEEcCCCc------------------ccC--------------
Confidence 34468999999999999999999999984 45655555544432 011
Q ss_pred HHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCceEEcC
Q 002136 174 KEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGS 226 (961)
Q Consensus 174 ~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~ 226 (961)
..++.+.|.++|+.||+..| ...+++ .+|-......-.+|.++|++|...
T Consensus 48 ~~e~~~~I~~dL~wLG~~~d-~~~~~q--S~~~~~~~~~a~~Li~~G~AY~c~ 97 (522)
T TIGR00440 48 DPEYVESIKRDVEWLGFKWE-GKIRYS--SDYFDELYRYAEELIKKGLAYVDE 97 (522)
T ss_pred ChHHHHHHHHHHHHcCCCCC-CCceEc--cccHHHHHHHHHHHHHcCCEEeec
Confidence 14577889999999997655 233443 334444456668999999998743
No 100
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=97.49 E-value=0.0004 Score=73.36 Aligned_cols=93 Identities=26% Similarity=0.349 Sum_probs=67.2
Q ss_pred EeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 002136 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (961)
Q Consensus 94 i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~~ 173 (961)
++=.+|.|||.||+||+++.++.-.+||-+ .|.=++.+=-||- .. +
T Consensus 3 ~~RFAPsPtG~lHlG~~~~al~~~l~Ar~~--~G~~iLRieDtD~--------------------~R-~----------- 48 (238)
T cd00807 3 VTRFPPEPNGYLHIGHAKAILLNFGYAKKY--GGRCNLRFDDTNP--------------------EK-E----------- 48 (238)
T ss_pred eEecCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEecCCCC--------------------cc-c-----------
Confidence 445579999999999999999999999763 4544444333332 10 0
Q ss_pred HHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCceEE
Q 002136 174 KEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (961)
Q Consensus 174 ~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~ 224 (961)
..++.+.|.++|+.||+..| ..++ ..++.+.-+++..+|.++|++|.
T Consensus 49 ~~~~~~~I~~dL~wlGl~wD--~~~~--QS~r~~~Y~~~~~~L~~~g~aY~ 95 (238)
T cd00807 49 EEEYVDSIKEDVKWLGIKPY--KVTY--ASDYFDQLYEYAEQLIKKGKAYV 95 (238)
T ss_pred chHHHHHHHHHHHHcCCCCC--Ccee--cccCHHHHHHHHHHHHHcCCeec
Confidence 13567789999999997655 4444 34455667888999999999998
No 101
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=97.45 E-value=0.00023 Score=79.30 Aligned_cols=94 Identities=27% Similarity=0.382 Sum_probs=63.1
Q ss_pred eCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHH
Q 002136 95 SMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWK 174 (961)
Q Consensus 95 ~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~~~ 174 (961)
+=.+|.|||.||||||++.++.-.+|| +..|.=++.+==+|.. +. .
T Consensus 4 tRFAPsPtG~lHiG~~r~al~n~~~Ar--~~~G~~iLRieDtD~~------------------R~--------------~ 49 (314)
T PF00749_consen 4 TRFAPSPTGYLHIGHARTALLNYLFAR--KYGGKFILRIEDTDPE------------------RC--------------R 49 (314)
T ss_dssp EEE---SSSS-BHHHHHHHHHHHHHHH--HTTSEEEEEEETSSTT------------------TC--------------H
T ss_pred EeeCCCCCCCcccchhHHHHHHHHHHh--ccCceEEEeccccccc------------------cc--------------h
Confidence 344699999999999999999999998 5567666655444431 11 1
Q ss_pred HHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCceEEc
Q 002136 175 EKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (961)
Q Consensus 175 ~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~ 225 (961)
.++.+.|.++|+.||+..| ..+|+ ..++.+.-+.+..+|.++|++|..
T Consensus 50 ~~~~~~i~~~L~wlGl~~D-~~~~~--QS~r~~~Y~~~~~~L~~~g~aY~C 97 (314)
T PF00749_consen 50 PEFYDAILEDLRWLGLEWD-YGPYY--QSDRLEIYQEAAEKLIDKGKAYPC 97 (314)
T ss_dssp HHHHHHHHHHHHHHT---S-TCEEE--GGGGHHHHHHHHHHHHHTTSEEEE
T ss_pred hhHHHHHHhheeEEEEecC-CeEEe--HHHHHHHHHHHHHHHhhcCCCccc
Confidence 3566789999999998777 23344 345566778888899999999863
No 102
>PLN02859 glutamine-tRNA ligase
Probab=97.40 E-value=0.00061 Score=82.62 Aligned_cols=95 Identities=23% Similarity=0.319 Sum_probs=67.1
Q ss_pred EEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 002136 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (961)
Q Consensus 93 ~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~ 172 (961)
+++=.||.|||.||||||++.++...+||.+ .|.-.+..=-||- .+.
T Consensus 265 V~tRFaPsPtG~LHiGharaallN~~~Ar~~--~G~~~LRieDTdp------------------~r~------------- 311 (788)
T PLN02859 265 VYTRFPPEPNGYLHIGHAKAMFVDFGLAKER--GGCCYLRFDDTNP------------------EAE------------- 311 (788)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEecCCCC------------------Ccc-------------
Confidence 5667789999999999999999999999974 5655555433332 111
Q ss_pred HHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCceEEc
Q 002136 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (961)
Q Consensus 173 ~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~ 225 (961)
..+|.+.|.++++.|| ++|+..++++| |-......-.+|.++|++|..
T Consensus 312 -~~e~~~~I~edL~WLG--~~~d~~~~qSd--~f~~~Y~~A~~Li~~G~AY~C 359 (788)
T PLN02859 312 -KKEYIDHIEEIVEWMG--WEPFKITYTSD--YFQELYELAVELIRRGHAYVD 359 (788)
T ss_pred -chHHHHHHHHHHHHcC--CCCCCcccccH--hHHHHHHHHHHHHHcCCeEec
Confidence 1457788999999999 56766655443 332233445679999999874
No 103
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=97.30 E-value=0.00081 Score=78.20 Aligned_cols=95 Identities=28% Similarity=0.365 Sum_probs=70.2
Q ss_pred EEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 002136 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (961)
Q Consensus 93 ~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~ 172 (961)
+++=.+|.|||.||||||++.++...+||.+ .|.-++.+=-||- .+.
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar~~--~G~fiLRiEDTD~------------------~R~------------- 56 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYARKY--GGKFILRIEDTDP------------------ERE------------- 56 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHHHh--CCEEEEEecCCCC------------------CCC-------------
Confidence 6677789999999999999999999999864 4666666544442 111
Q ss_pred HHHHHHHHHHHHHHHhCCccCCCCC-ccCCChhhHHHHHHHHHHHHhcCceEEc
Q 002136 173 WKEKYGGTITSQIKRLGASCDWTRE-RFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (961)
Q Consensus 173 ~~~~~~~~i~~~l~~lG~s~Dw~r~-~~T~d~~~~~~v~~~F~~L~~~GlIy~~ 225 (961)
..++.+.|.++|+.||+ +|+.. |. ..++-..-+..-.+|.++|+.|..
T Consensus 57 -~~e~~~~I~~~L~WLGl--~wde~~~~--QS~r~~~Y~~~~~~Li~~G~AY~c 105 (472)
T COG0008 57 -TPEAEDAILEDLEWLGL--DWDEGPYY--QSERFDIYYEYAEKLIEKGKAYVC 105 (472)
T ss_pred -CHHHHHHHHHHHHhcCC--CCCCceee--hhhhHHHHHHHHHHHHHCCCeEEe
Confidence 13567889999999995 55552 33 344556667888899999999864
No 104
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=97.27 E-value=0.0008 Score=73.84 Aligned_cols=96 Identities=26% Similarity=0.300 Sum_probs=66.9
Q ss_pred EEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 002136 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (961)
Q Consensus 93 ~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~ 172 (961)
+++=.+|.|||.|||||+++.++.-.+||-+ .|.=++.+==+|. ++.
T Consensus 6 v~~RFAPSPTG~LHlG~~rtAL~n~l~Ar~~--~G~~iLRiEDtD~------------------~R~------------- 52 (299)
T PRK05710 6 YIGRFAPSPSGPLHFGSLVAALGSWLDARAH--GGRWLLRIEDIDP------------------PRE------------- 52 (299)
T ss_pred eeEEeCcCCCCcccHHHHHHHHHHHHHHHHc--CCEEEEEECcCCC------------------Ccc-------------
Confidence 3445569999999999999999999888764 3544444433332 111
Q ss_pred HHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCceEEc
Q 002136 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (961)
Q Consensus 173 ~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~ 225 (961)
..++.+.|.++|+.||+..| ...|+. .++...-+.+..+|.++|++|..
T Consensus 53 -~~~~~~~I~~dL~wlGl~wD-e~~~~Q--S~r~~~Y~~~~~~L~~~G~aY~C 101 (299)
T PRK05710 53 -VPGAADAILADLEWLGLHWD-GPVLYQ--SQRHDAYRAALDRLRAQGLVYPC 101 (299)
T ss_pred -chHHHHHHHHHHHHCCCCCC-CCceEe--eccHHHHHHHHHHHHHCCCceec
Confidence 13567789999999997544 134443 33556678888999999999763
No 105
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=97.20 E-value=0.0013 Score=69.36 Aligned_cols=88 Identities=26% Similarity=0.324 Sum_probs=63.5
Q ss_pred eCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHH
Q 002136 95 SMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWK 174 (961)
Q Consensus 95 ~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~~~ 174 (961)
+=.+|.|||.||+||+++.++.-.+||-+ .|.=++.+=-||. .+. .
T Consensus 4 ~RFAPsPtG~lHlG~~r~al~n~l~Ar~~--~G~~iLRieDtD~------------------~R~--------------~ 49 (230)
T cd00418 4 TRFAPSPTGYLHIGHARTALFNFAFARKY--GGKFILRIEDTDP------------------ERS--------------R 49 (230)
T ss_pred EEeCCCCCCcccHHHHHHHHHHHHHHHHc--CCeEEEEeCcCCC------------------CCC--------------C
Confidence 44579999999999999999999999864 5655555544443 010 1
Q ss_pred HHHHHHHHHHHHHhCCccCCCC-CccCCChhhHHHHHHHHHHHHhcC
Q 002136 175 EKYGGTITSQIKRLGASCDWTR-ERFTLDEQLSRAVVEAFIRLHEKG 220 (961)
Q Consensus 175 ~~~~~~i~~~l~~lG~s~Dw~r-~~~T~d~~~~~~v~~~F~~L~~~G 220 (961)
.++.+.|.++|+.||+. |+. .++. .++.+.-+....+|.++|
T Consensus 50 ~~~~~~I~~dL~wlGl~--wd~~~~~Q--S~r~~~y~~~~~~L~~~g 92 (230)
T cd00418 50 PEYVESILEDLKWLGLD--WDEGPYRQ--SDRFDLYRAYAEELIKKG 92 (230)
T ss_pred hHHHHHHHHHHHHcCCC--CCCCeeeh--hcCHHHHHHHHHHHHHcC
Confidence 45678899999999975 544 4443 344556678889999999
No 106
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.06 E-value=0.002 Score=68.58 Aligned_cols=88 Identities=26% Similarity=0.317 Sum_probs=60.2
Q ss_pred eCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHH
Q 002136 95 SMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWK 174 (961)
Q Consensus 95 ~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~~~ 174 (961)
+=.+|.|||.||+||+++.++.-.++|- ..|.=.+.+==||. ++. .
T Consensus 4 ~RfAPsPtG~LHlG~~~~al~n~l~ar~--~~G~~ilRieDtd~------------------~r~--------------~ 49 (239)
T cd00808 4 TRFAPSPTGFLHIGGARTALFNYLFARK--HGGKFILRIEDTDQ------------------ERS--------------V 49 (239)
T ss_pred EEeCCCCCCcccHHHHHHHHHHHHHHHH--cCCeEEEEECcCCC------------------CCC--------------c
Confidence 3457999999999999999999998884 34533333333332 010 1
Q ss_pred HHHHHHHHHHHHHhCCccCCCC---------CccCCChhhHHHHHHHHHHHHhcC
Q 002136 175 EKYGGTITSQIKRLGASCDWTR---------ERFTLDEQLSRAVVEAFIRLHEKG 220 (961)
Q Consensus 175 ~~~~~~i~~~l~~lG~s~Dw~r---------~~~T~d~~~~~~v~~~F~~L~~~G 220 (961)
.++.+.|.++|..||+ ||+. .|+.++ +......+..+|.++|
T Consensus 50 ~~~~~~i~~dL~wlGl--~~d~~~~~~g~~~~~~QS~--r~~~y~~~~~~L~~~g 100 (239)
T cd00808 50 PEAEEAILEALKWLGL--DWDEGPDVGGPYGPYRQSE--RLEIYRKYAEKLLEKG 100 (239)
T ss_pred hHHHHHHHHHHHHcCC--CCCcCCccCCCCCCEeeeC--CHHHHHHHHHHHHHcC
Confidence 3566788999999996 5555 455443 4555677788898888
No 107
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.41 E-value=0.0087 Score=68.19 Aligned_cols=99 Identities=23% Similarity=0.366 Sum_probs=72.3
Q ss_pred EEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 002136 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (961)
Q Consensus 93 ~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~ 172 (961)
+++-.||-|+|.||||||...++- -|.... |+=-.+.-+|+.--+ .+
T Consensus 201 Vv~RFPPEpSGyLHIGHAKAALLN----qYfa~~-~~G~LIvRFDDTNPa---------------KE------------- 247 (712)
T KOG1147|consen 201 VVTRFPPEPSGYLHIGHAKAALLN----QYFAQA-YQGKLIVRFDDTNPA---------------KE------------- 247 (712)
T ss_pred eEEecCCCCCceeehhhHHHHHHH----HHHHHh-cCceEEEEecCCCcc---------------hh-------------
Confidence 556668999999999999886653 333222 222445556664311 01
Q ss_pred HHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCceEEcCeee
Q 002136 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMV 229 (961)
Q Consensus 173 ~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v 229 (961)
.+++.+.|.+++..|||-.| .+|...+|-..+...=.+|.+.|..|-+..|.
T Consensus 248 -~~eFe~~IleDl~~LgIkpd----~~TyTSDyF~~i~dycv~likeGKAYvDDTp~ 299 (712)
T KOG1147|consen 248 -NEEFEDVILEDLSLLGIKPD----RVTYTSDYFDEIMDYCVKLIKEGKAYVDDTPT 299 (712)
T ss_pred -hHHHHHHHHHHHHHhCcCcc----eeeechhhHHHHHHHHHHHHhcCcccccCCcH
Confidence 14677889999999999999 45777888888999999999999999888774
No 108
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=96.16 E-value=0.13 Score=51.44 Aligned_cols=136 Identities=15% Similarity=0.137 Sum_probs=83.7
Q ss_pred hcChhHHHHHHHhCCCCCccccCHHHHHHH--------HHHHHHHHHHHHHHHhhCCCCCchhhHHHHHhhccchhhhhc
Q 002136 603 EFGADALRFTISLGTAGQDLSLSIERLTAN--------KAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLC 674 (961)
Q Consensus 603 ~yGaDalR~~L~~~~~~~D~~f~~~~~~~~--------~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (961)
+.|.|++||++++.++..+++||++.+... ..-..++.|.++-... ..... ...+..
T Consensus 2 ~i~~~a~~~~~l~~~~~~~~~fd~~~~~~~~~~~~~yi~ya~aRi~nIl~k~~~---~~~~~------------~~~~~~ 66 (156)
T cd07956 2 EVGVGAVKYQDLSNKRIKDYTFDWERMLSFEGDTGPYLQYAHARLCSILRKAGE---TIEAE------------ADADLS 66 (156)
T ss_pred ccchhHHHHHHHhcCCCCCceecHHHHHhhcCCCchhHHHHHHHHHHHHHhCCC---cCccc------------cccchh
Confidence 468999999999999999999999986531 1122333333322110 00000 000011
Q ss_pred CC-CchhHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhhHHHHHHhhhhhccCCChH---HHHHHHHHHHHHH
Q 002136 675 KA-PLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDS---DAIIAQAVLLYIF 750 (961)
Q Consensus 675 ~~-~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~i~~f~~~~~~n~Yle~~K~~l~~~~~~~---~~~~~~~~l~~vl 750 (961)
.+ ...++-++..+..+.+.+..++.+.+++.++..++++. ..+.++| +.. ++..+ +.+ .|......+..++
T Consensus 67 ll~~~~E~~L~~~l~~~~~~i~~~~~~~~~~~l~~~l~~L~-~~~~~ff-d~v--~V~~~-~~~i~~nRL~Ll~~v~~vl 141 (156)
T cd07956 67 LLPEPDERDLILLLAKFPEVVKNAAETLEPHTIATYLFDLA-HAFSKFY-NAC--PVLGA-EEELRNARLALVAAARQVL 141 (156)
T ss_pred hcCCHHHHHHHHHHHHhHHHHHHHHHHcCcHHHHHHHHHHH-HHHHHHH-hcC--cccCC-CHHHHHHHHHHHHHHHHHH
Confidence 11 33577788888899899999999999999999999986 4555555 322 33332 322 3344445555667
Q ss_pred HHHHHHhC
Q 002136 751 ENILKLLH 758 (961)
Q Consensus 751 ~~~l~LL~ 758 (961)
..++.+|.
T Consensus 142 ~~~l~llg 149 (156)
T cd07956 142 ANGLDLLG 149 (156)
T ss_pred HHHHHhcC
Confidence 77777775
No 109
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.14 E-value=0.076 Score=60.69 Aligned_cols=158 Identities=15% Similarity=0.247 Sum_probs=108.0
Q ss_pred CCh--hhHHHHHHHHHhCCCCCCCCCCCCCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeec-------
Q 002136 63 FDF--TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWL------- 133 (961)
Q Consensus 63 ~~~--~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~------- 133 (961)
+++ -++.-.+..|++...|........++-++-..-||.+-+.|+||.++.+++-+++.-++..|++|.-+
T Consensus 81 ln~~~~~k~~l~~i~~~~~~~g~~~~~~~k~iVVefSSPNIAK~FHvGhLRsTiiG~flanl~e~~G~~Vtr~NYLGDWG 160 (567)
T KOG1195|consen 81 LNRRRLIKSVLPIIEEQREKYGKNELGSGKKIVVEFSSPNIAKPFHVGHLRSTIIGNFLANLHEALGWEVTRVNYLGDWG 160 (567)
T ss_pred ecHHHHHHHHHHHHHHHhcccCccccccCceEEEEecCCCcccccccchhhhhhhhhHhhhhHHhhCCceeehhhhhHHH
Confidence 444 35778888899998888764445678999999999999999999999999999999999999999863
Q ss_pred -------CCCCCCCc-------hHHHHHHHHHHH-----cCCCccccCHHHHH-------H--HHHH-HHHHHHHHHHHH
Q 002136 134 -------PGTDHAGI-------ATQLVVEKMLAA-----EGIKRVELSRDEFT-------K--RVWE-WKEKYGGTITSQ 184 (961)
Q Consensus 134 -------~G~D~~Gl-------~~q~~vek~l~~-----~g~~~~~~~~~~f~-------~--~~~~-~~~~~~~~i~~~ 184 (961)
.|+-..|- ||+...+.+.+. ...+..+..++-|- + +.|+ +.+..++...+.
T Consensus 161 kQFgll~~g~~~~g~e~~L~~~pI~hL~dvYVk~nk~~~~~~~~~~~are~f~rlE~~d~e~~k~Wqrfr~lsIe~l~~~ 240 (567)
T KOG1195|consen 161 KQFGLLALGFQLYGDEEELQLNPIKHLFDVYVKINKDAEKDPDTAEEAREFFKRLEDGDEEHLKLWQRFRDLSIEKLIKT 240 (567)
T ss_pred HHhhHHhccHHhhCchhhhccchHHHHHHHHHHhhhhhhhCcchHHHHHHHHHHHhcccHHHHHHHHHhhhhhHHHHHHH
Confidence 24555554 444333222211 11222222222221 1 1233 456667777888
Q ss_pred HHHhCCccC-CCCCccCCChhhHHHHHHHHHHHHhcCceEE
Q 002136 185 IKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (961)
Q Consensus 185 l~~lG~s~D-w~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~ 224 (961)
..|||+.|| |+-+ +.-+.+..+.+...+...||+..
T Consensus 241 Y~Rl~v~FD~y~gE----Sqv~~e~~~~~~d~~rs~~l~~e 277 (567)
T KOG1195|consen 241 YNRLNVKFDEYSGE----SQVSNEKMQEALDLLRSANLTEE 277 (567)
T ss_pred HHHhceeeeeccch----HHHHHHHHHHHHHHHHhcCCccc
Confidence 899999999 6543 23467778888888888886533
No 110
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=95.18 E-value=0.019 Score=66.32 Aligned_cols=72 Identities=14% Similarity=0.013 Sum_probs=45.3
Q ss_pred CCcceEeeeccccccHHHHHHHHHhHhcCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHH
Q 002136 538 YPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTIS 614 (961)
Q Consensus 538 ~P~d~~~~G~Dil~fw~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~ 614 (961)
+.+++.+.|.||......- .-+.-.+.+..| ..+.+.++...+|.|||||.||.|+..|- ..+++.++=++.
T Consensus 185 ~~~~iq~gG~DQ~~ni~~g-rdl~~r~~~~~~--~~lt~PlL~g~dG~KMsKS~~naI~L~d~--~tsp~~i~qki~ 256 (410)
T PRK13354 185 EDVDLQIGGTDQWGNILMG-RDLQRKLEGEEQ--FGLTMPLLEGADGTKMGKSAGGAIWLDPE--KTSPYEFYQFWM 256 (410)
T ss_pred CCCCEEEecHHHHHHHHHH-HHHHHHhCCCCc--eEeccCCccCCCCCccCCCCCCceeccCC--CCCHHHHHHHHH
Confidence 4788999999996532211 111222334445 34567788889999999999999987762 233444443333
No 111
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=95.12 E-value=0.095 Score=55.52 Aligned_cols=75 Identities=20% Similarity=0.068 Sum_probs=47.7
Q ss_pred cceEeeeccccccHHHHHHHHHhHhcCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhh-cChhHHHHHHHhCCC
Q 002136 540 TTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE-FGADALRFTISLGTA 618 (961)
Q Consensus 540 ~d~~~~G~Dil~fw~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~-yGaDalR~~L~~~~~ 618 (961)
.+..+-|.|.+.. ..+.+.+.-.+.-..| ...-++++++.+|+|||||.|+ .+..++.++ |.+++++-|++....
T Consensus 110 IThViRG~D~l~s-t~~q~~l~~~Lg~~~P--~~~H~pll~~~~g~KLSKr~~~-~~i~~~r~~G~~p~ai~~~l~~lG~ 185 (230)
T cd00418 110 ITHVLRGEDHLDN-TPIQDWLYEALGWEPP--RFYHFPRLLLEDGTKLSKRKLN-TTLRALRRRGYLPEALRNYLALIGW 185 (230)
T ss_pred CCEEEECHhhhhc-hHHHHHHHHHcCCCCC--eEEEeeeeeCCCCCCccCcCCC-cCHHHHHHCCCcHHHHHHHHHHcCC
Confidence 3445567776542 1111122222322344 6677888889999999999998 456665553 889999999886543
No 112
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.17 E-value=0.053 Score=66.98 Aligned_cols=79 Identities=27% Similarity=0.426 Sum_probs=62.8
Q ss_pred HHHHHHHHHHcCCccccccc--------------cccCCcccCCCCceeeeeccceeeeccHHHHHHHHHHHcCCce-ee
Q 002136 374 RKKLWSDLEETGLAVKKEPH--------------TLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELT-IM 438 (961)
Q Consensus 374 r~~i~~~L~~~g~~~~~~~~--------------~~~~p~~~r~~~~v~~~~~~qwF~~~~~~~~~~~~~~~~~~~~-~~ 438 (961)
-+-+.-.|.++|++.+.+.. +-....|||||.+|+.+.-+||||++++++++|++.+.. +. ..
T Consensus 137 ~QW~F~kL~ekGL~y~~~~~VnwcP~d~tvlaneqv~~g~~~r~~~~V~~kel~qw~~kit~yae~ll~~l~~--l~~~w 214 (814)
T COG0495 137 IQWQFLKLYEKGLAYRKEAPVNWCPVDGTVLANEQVIDGGCWRCGEPVEIKELTQWFFKITDYADELLDDLDK--LATLW 214 (814)
T ss_pred HHHHHHHHHHCCCEEeccccceeCCCcCCccccceeecCCcccCCCceeEeeeEEEEEEechhHHHHHhhhhh--hccCC
Confidence 35577889999988654432 233456899999999999999999999999999988763 33 58
Q ss_pred chhHHHHHHHHHhcCC
Q 002136 439 PERFEKIYNHWLSNIK 454 (961)
Q Consensus 439 P~~~~~~~~~wl~~l~ 454 (961)
|+..+..-++|+..-.
T Consensus 215 PE~Vk~mq~nWIg~s~ 230 (814)
T COG0495 215 PETVKGMQRNWIGPSE 230 (814)
T ss_pred chhHHHHHHcCcCCCC
Confidence 9999999999996433
No 113
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=94.12 E-value=0.038 Score=63.92 Aligned_cols=72 Identities=18% Similarity=0.155 Sum_probs=47.2
Q ss_pred CCcceEeeeccccccHH-HHHHHHHhHhcCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHh
Q 002136 538 YPTTMLETGHDILFFWV-ARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISL 615 (961)
Q Consensus 538 ~P~d~~~~G~Dil~fw~-~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~ 615 (961)
+.+++.+.|.||..... .|-++- .+..+.+| .+...++.+.+|+|||||.||.|+..| +...++.++=++.+
T Consensus 187 ~~~~i~~gG~DQ~~ni~~grdla~--r~~~~~~~--~l~~plL~~~~G~KMsKS~~naI~L~d--~~tsp~~i~qki~~ 259 (408)
T PRK05912 187 YGCDLQLGGSDQWGNILSGRDLQR--RYGGKPQF--GLTMPLLTGLDGKKMGKSEGNAVWLDE--EKTSPYEMYQKWMN 259 (408)
T ss_pred CCCCEEeccHHHHHHHHHHHHHHH--HhCCCCeE--EEecCCcCCCCCCcccCCCCCceeCCC--CCCCHHHHHHHHhc
Confidence 57899999999975322 122222 22223333 346777778999999999999999876 23456655555544
No 114
>PLN02563 aminoacyl-tRNA ligase
Probab=94.10 E-value=0.098 Score=66.73 Aligned_cols=79 Identities=22% Similarity=0.457 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHcCCccccccc--------------cccCCcccCCCCceeeeeccceeeeccHHHHHHHHHHHcCCce
Q 002136 371 FEARKKLWSDLEETGLAVKKEPH--------------TLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELT 436 (961)
Q Consensus 371 ~~ar~~i~~~L~~~g~~~~~~~~--------------~~~~p~~~r~~~~v~~~~~~qwF~~~~~~~~~~~~~~~~~~~~ 436 (961)
.+.-+.+...|-++|++.+.+.. +...++|+|||.+++.+..+||||+++++++++++.++. +.
T Consensus 211 ~~~~q~~F~~L~~~GliY~~~~~v~wcp~~~T~La~~Ev~~~~~~~~~~~~~~~~~~q~f~~it~ya~~L~~~l~~--~~ 288 (963)
T PLN02563 211 YKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGLSERGGHPVIRKPMRQWMLKITAYADRLLEDLDD--LD 288 (963)
T ss_pred HHHHHHHHHHHHHCCCEEeeeeeeeecCCcCCCCCHHHhhcCCCcCCCCceEEEecceeEEecchhHHHHHHhhhh--cC
Confidence 45667788888999988654332 223467999999999999999999999999999999974 34
Q ss_pred eechhHHHHHHHHHhc
Q 002136 437 IMPERFEKIYNHWLSN 452 (961)
Q Consensus 437 ~~P~~~~~~~~~wl~~ 452 (961)
.|++.++.-.+||..
T Consensus 289 -wp~~v~~~q~nwiG~ 303 (963)
T PLN02563 289 -WPESIKEMQRNWIGR 303 (963)
T ss_pred -CCHHHHHHHHHhccc
Confidence 699999999999854
No 115
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=94.04 E-value=0.06 Score=58.91 Aligned_cols=69 Identities=19% Similarity=0.033 Sum_probs=43.1
Q ss_pred cceEeeeccccccH-HHHHHHHHhHhcCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHh
Q 002136 540 TTMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISL 615 (961)
Q Consensus 540 ~d~~~~G~Dil~fw-~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~ 615 (961)
.++...|.||.... .+|-++-. +....| -.+.|.++...+|+|||||.+|.++ ..+. -.++.++=.+..
T Consensus 152 ~~l~~~G~DQ~~~i~~~rd~a~r--~~~~~~--~~l~~~ll~~l~G~KMSKS~~~~~~-i~l~--dsp~~i~~Ki~~ 221 (269)
T cd00805 152 VDLQLGGSDQRGNITLGRDLIRK--LGYKKV--VGLTTPLLTGLDGGKMSKSEGNAIW-DPVL--DSPYDVYQKIRN 221 (269)
T ss_pred CCeeEecHHHHHHHHHHHHHHHH--hCCCCc--EEEeeccccCCCCCcccCCCCCccc-ccCC--CCHHHHHHHHHc
Confidence 48889999997432 22222221 222334 3467899989999999999999995 3332 245555544443
No 116
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=94.00 E-value=0.057 Score=69.89 Aligned_cols=60 Identities=13% Similarity=0.232 Sum_probs=57.4
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHh-HhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 888 VDISAEVQRLSKRLSKMQSEYDGLVA-RLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKN 948 (961)
Q Consensus 888 id~~~e~~rl~k~~~kl~~~~~~~~~-kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~ 948 (961)
-.+++|++||+|+++++++++++.+. +++++.|++++|+++ +++++++++++++++.++.
T Consensus 845 ~rLekel~kl~Kel~kl~~~L~n~~f~~kap~~~veka~~kl-~~~~~~l~~le~~l~~L~~ 905 (1052)
T PRK14900 845 ARVDKEIGKVDQDLAVLERKLQNPSFVQNAPPAVVEKDRARA-EELREKRGKLEAHRAMLSG 905 (1052)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCchhhhcCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence 36999999999999999999999998 899999999999999 9999999999999999987
No 117
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=93.78 E-value=0.08 Score=52.00 Aligned_cols=50 Identities=20% Similarity=0.156 Sum_probs=33.9
Q ss_pred cceEeeeccccccHHHHHHHHHhHhcCCCCceEEEEeceEEcCCCccccccC
Q 002136 540 TTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTL 591 (961)
Q Consensus 540 ~d~~~~G~Dil~fw~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~ 591 (961)
.++++.|.|+.. ++.....+.-.+.+..+ ...+.+|++...+|+|||||+
T Consensus 94 ~~i~~~G~Dq~~-h~~~~~~i~~~~~~~~~-p~~~~~~~l~~~~g~KmSks~ 143 (143)
T cd00802 94 CDIHLGGSDQLG-HIELGLELLKKAGGPAR-PFGLTFGRVMGADGTKMSKSK 143 (143)
T ss_pred cEEEEechhHHH-HHHHHHHHHHHhCCCCC-ceEEEeCCeECCCCCcCCCCC
Confidence 589999999876 33333333333333333 356678999987889999995
No 118
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.76 E-value=0.15 Score=59.22 Aligned_cols=96 Identities=24% Similarity=0.296 Sum_probs=58.3
Q ss_pred EEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHH
Q 002136 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVW 171 (961)
Q Consensus 92 f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~ 171 (961)
=+.+-.||=|||.||||||-..-+-==+|++ +.|..-|. +|+.- |+. |
T Consensus 248 kV~TRFPPEPNG~LHIGHaKAInvNFgyAk~--~~G~cyLR---fDDTN-----------------PEk---E------- 295 (764)
T KOG1148|consen 248 KVVTRFPPEPNGILHIGHAKAINVNFGYAKA--HGGVCYLR---FDDTN-----------------PEK---E------- 295 (764)
T ss_pred eeEEeCCCCCCceeeecchhheeechhhhhh--hCCeEEEe---cCCCC-----------------cch---h-------
Confidence 3667778999999999999653222112322 22322221 23211 110 0
Q ss_pred HHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCceEEc
Q 002136 172 EWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (961)
Q Consensus 172 ~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~ 225 (961)
.++|-..|++..+.||.. --..|.+.+|-......=..|.++|+.|-.
T Consensus 296 --ee~yf~sI~e~V~WLG~~----P~kvTysSDyFdqLy~~av~LIrkG~AYVc 343 (764)
T KOG1148|consen 296 --EEEYFESIKEMVAWLGFE----PYKVTYSSDYFDQLYELAVELIRKGKAYVC 343 (764)
T ss_pred --hHHHHHHHHHHHHHhCCC----ceeeecchhHHHHHHHHHHHHHhcCceeEE
Confidence 146777888888888843 223488888876667777788889988753
No 119
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=93.70 E-value=0.069 Score=58.49 Aligned_cols=56 Identities=16% Similarity=0.094 Sum_probs=37.2
Q ss_pred CCcceEeeecccccc-HHHHHHHHHhHhcC-CCCceEEEEeceEEcCCCccccccCCCccCc
Q 002136 538 YPTTMLETGHDILFF-WVARMVMMGIEFTG-SVPFSHVYLHGLIRDSQGRKMSKTLGNVIDP 597 (961)
Q Consensus 538 ~P~d~~~~G~Dil~f-w~~~~i~~~~~l~~-~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p 597 (961)
+.+++...|.||... =.+|-++- .+.+ ..| ..+++.++.+.+|.|||||.||.++.
T Consensus 152 ~~~~~vp~G~DQ~~~i~l~rdla~--r~n~~~~p--~~l~~p~l~~l~G~KMSKS~~~~i~l 209 (273)
T cd00395 152 EGCDIQPGGSDQWGNITLGRELAR--RFNGFTIA--EGLTIPLVTKLDGPKFGKSESGPKWL 209 (273)
T ss_pred cCCcEEEecHHHHHHHHHHHHHHH--HhCCCCCC--eEEeeccccCCCCCcCCCCCCCCccc
Confidence 446899999999643 22222222 2222 244 34556899999999999999999864
No 120
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=93.61 E-value=0.076 Score=58.93 Aligned_cols=62 Identities=23% Similarity=0.155 Sum_probs=39.2
Q ss_pred CCcceEeeecccccc-HHHHHHHHHhHhcCCCCceEEEEeceEEcCCCc-cccccCCC-ccCchh
Q 002136 538 YPTTMLETGHDILFF-WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGR-KMSKTLGN-VIDPID 599 (961)
Q Consensus 538 ~P~d~~~~G~Dil~f-w~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G~-KMSKS~GN-vI~p~d 599 (961)
+-.|+.+.|.||... =.+|-++-.+......|-...+++.++...+|. |||||.+| .|+..|
T Consensus 148 l~~~~~~~G~DQ~~~~~l~rd~a~k~~~~~~~~~p~~l~~~~l~~l~G~~KMSKS~~ns~I~L~d 212 (292)
T PF00579_consen 148 LKADLVPGGIDQRGHIELARDLARKFNYKEIFPKPAGLTSPLLPGLDGQKKMSKSDPNSAIFLDD 212 (292)
T ss_dssp TTHSEEEEEGGGHHHHHHHHHHHHHHTHHSTSSS-EEEEETCBBSTTSSSBTTTTTTGGS-BTTT
T ss_pred eccccccccchHHHHHHHHHHHHhhhcccccccCchheeeccccccCCccccCccCCccEEEEec
Confidence 346688999999753 233333332222111222366777788889999 99999999 777666
No 121
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=92.94 E-value=0.45 Score=53.61 Aligned_cols=132 Identities=19% Similarity=0.211 Sum_probs=86.1
Q ss_pred CCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHH
Q 002136 96 MPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKE 175 (961)
Q Consensus 96 ~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~ 175 (961)
-.-|-|||.||+|-+++...-=++||- ..|.=++.+=-||---. . .
T Consensus 37 RFAPSPTGfLHlGgLRTALfNYLfArk--~gGkFiLRiEDTDq~R~---------------v-----------------~ 82 (524)
T KOG1149|consen 37 RFAPSPTGFLHLGGLRTALFNYLFARK--KGGKFILRIEDTDQKRL---------------I-----------------R 82 (524)
T ss_pred eecCCCCcceehhhHHHHHHHHHHHHh--cCCeEEEEecccccccc---------------c-----------------c
Confidence 334899999999999997777677763 46777777777764211 0 1
Q ss_pred HHHHHHHHHHHHhCCccCCC----CCccCCC-hhhHHHHHHHHHHHHhcCceEEc----------------Ceeee-cCC
Q 002136 176 KYGGTITSQIKRLGASCDWT----RERFTLD-EQLSRAVVEAFIRLHEKGLIYQG----------------SYMVN-WSP 233 (961)
Q Consensus 176 ~~~~~i~~~l~~lG~s~Dw~----r~~~T~d-~~~~~~v~~~F~~L~~~GlIy~~----------------~~~v~-w~p 233 (961)
...+.|.+.|+.+|+..|=. -+|-... .+..+.-+..-.+|.+.|..||. .+.+. |+-
T Consensus 83 gs~e~i~~~L~w~nl~~DEgP~~gG~~GPY~QS~R~eiY~kyae~Ll~sG~AYrCFCs~~rL~~lrk~A~k~~~~p~YD~ 162 (524)
T KOG1149|consen 83 GSEEAIYEDLKWANLDWDEGPGVGGPFGPYEQSERLEIYKKYAEKLLESGHAYRCFCSEERLDLLRKSALKKHEIPRYDR 162 (524)
T ss_pred chHHHHHHHHHhcCCCcccCCCcCCCCCchhhHHHHHHHHHHHHHHHhcCCeeEeccCHHHHHHHHHhhhccCCCCcccc
Confidence 12345678888888776621 1111111 11223344455678888999874 33344 554
Q ss_pred CCCccccccccccccCCCeEEEEEEEecC
Q 002136 234 NLQTAVSDLEVEYSEEPGTLYYIKYRVAG 262 (961)
Q Consensus 234 ~~~t~lsd~Ev~~~e~~~~~~~~~~~~~~ 262 (961)
+| .-+||+|+......|+-+-|+|++.+
T Consensus 163 kc-a~ls~~ei~~~lakg~pf~iRFrl~~ 190 (524)
T KOG1149|consen 163 KC-ANLSDAEIKQKLAKGTPFTIRFRLPK 190 (524)
T ss_pred hh-cccCHHHHHHHHhcCCCeeEEEecCC
Confidence 44 46899999988889998999999875
No 122
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=92.91 E-value=0.1 Score=58.74 Aligned_cols=61 Identities=30% Similarity=0.432 Sum_probs=38.7
Q ss_pred CCcceEeeeccccc-cHHHHHHHHHhHh-cC---CCCceEEE--EeceEEcCCCccccccCCCccCchh
Q 002136 538 YPTTMLETGHDILF-FWVARMVMMGIEF-TG---SVPFSHVY--LHGLIRDSQGRKMSKTLGNVIDPID 599 (961)
Q Consensus 538 ~P~d~~~~G~Dil~-fw~~~~i~~~~~l-~~---~~Pfk~v~--~hg~v~d~~G~KMSKS~GNvI~p~d 599 (961)
|.+|+...|.||.. +=++|-++..+.. .| ..| .-++ .|.++...+|+|||||.+|.|...|
T Consensus 148 ~~~d~VpvG~DQ~qhleLtRdiA~rfn~~yg~~f~~P-~~~~~~~~~~l~gLdg~KMSKS~~n~I~L~D 215 (332)
T PRK12556 148 FQATHVPVGKDQIQHIEIARDIATYFNHTFGDTFTLP-EYVIQEEGAILPGLDGRKMSKSYGNVIPLFA 215 (332)
T ss_pred ccCCEEEeccccHHHHHHHHHHHHHHHHhccccCCCc-eeccccccccccCCCCCCCCCCCCCcccccC
Confidence 45788889999984 4455555443321 11 234 2232 3566667889999999999985543
No 123
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=92.75 E-value=0.36 Score=51.62 Aligned_cols=76 Identities=21% Similarity=0.187 Sum_probs=51.2
Q ss_pred CcceEeeeccccccHHHHHHHHHhHhcCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhh-cChhHHHHHHHhCC
Q 002136 539 PTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE-FGADALRFTISLGT 617 (961)
Q Consensus 539 P~d~~~~G~Dil~fw~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~-yGaDalR~~L~~~~ 617 (961)
-++..+-|.|.+. ...++..+.-.+.-..| .+.-++.+++.+|+||||+.|+ .+...+.+. +.+.+++-|++...
T Consensus 118 ~ithViRG~D~~~-~t~~q~~l~~aLg~~~p--~~~h~pll~~~~g~KLSKR~~~-~~l~~lr~~G~~p~ai~~~l~~lG 193 (239)
T cd00808 118 GITHVIRGEEHLS-STPKQILLYEALGWEPP--KFAHLPLILNPDGKKLSKRKGD-TSISDYREEGYLPEALLNYLALLG 193 (239)
T ss_pred CCCEEEEChhhhh-ChHHHHHHHHHcCCCCC--ceEeeccccCCCCCcccCCCCC-ccHHHHHHCCCCHHHHHHHHHHcC
Confidence 3556677888654 34444444444433334 5667788889999999999999 455555443 77899999988644
Q ss_pred C
Q 002136 618 A 618 (961)
Q Consensus 618 ~ 618 (961)
.
T Consensus 194 ~ 194 (239)
T cd00808 194 W 194 (239)
T ss_pred C
Confidence 4
No 124
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=92.44 E-value=0.1 Score=59.84 Aligned_cols=61 Identities=25% Similarity=0.334 Sum_probs=39.2
Q ss_pred CCcceEeeeccccc-cHHHHHHHHHhHh-cC----CCCceEEEE--eceEEcCCCccccccCCCccCchh
Q 002136 538 YPTTMLETGHDILF-FWVARMVMMGIEF-TG----SVPFSHVYL--HGLIRDSQGRKMSKTLGNVIDPID 599 (961)
Q Consensus 538 ~P~d~~~~G~Dil~-fw~~~~i~~~~~l-~~----~~Pfk~v~~--hg~v~d~~G~KMSKS~GNvI~p~d 599 (961)
|-+|+...|.||.. .-++|-++..+.. .| ..| ..++. +..+...+|+|||||.||.|...|
T Consensus 147 y~ad~VPVG~DQ~qHlELaRdIA~rFN~~yg~~~F~~P-e~~i~~~~~~I~gLdg~KMSKS~~n~I~L~D 215 (431)
T PRK12284 147 FNAHKVPVGRDQIQHIEMARDIAQRFNHLYGGEFFVLP-EAVIEESVATLPGLDGRKMSKSYDNTIPLFA 215 (431)
T ss_pred cCCCEEEEcchhHHHHHHHHHHHHHHhhhcCCcccCCC-ccccccccccccCCCCccccCCCCCEeeecC
Confidence 45677888999974 4556666544321 11 134 23331 456778889999999999996554
No 125
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=92.16 E-value=0.24 Score=62.83 Aligned_cols=81 Identities=31% Similarity=0.506 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHcCCcccccccc---------------ccCCcccCCCCceeeeeccceeeeccHHHHHHHHHHHcCCc
Q 002136 371 FEARKKLWSDLEETGLAVKKEPHT---------------LRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGEL 435 (961)
Q Consensus 371 ~~ar~~i~~~L~~~g~~~~~~~~~---------------~~~p~~~r~~~~v~~~~~~qwF~~~~~~~~~~~~~~~~~~~ 435 (961)
.++-+.+...|-++|++.+.+... ...++|+|||.+++.+..+|||++++++++++++.++. .
T Consensus 129 ~~~~~~~F~~L~~kGliy~~~~~v~wcp~~~t~La~~ev~~~g~~~~~g~~v~~~~~~~~f~~i~~~~~~l~~~l~~--~ 206 (842)
T TIGR00396 129 YKWTQWIFLELFEKGLAYVKEADVNWCPNDGTVLANEQVDSDGRSWRGGTPVEKKELKQWFLKITAYAEELLNDLEE--L 206 (842)
T ss_pred HHHHHHHHHHHHHCCCeEeeccceEEeCCCCCCccHHHHhhcCccccCCCcceEeecceeEEehhhhHHHHHHHHhh--h
Confidence 456667888899999864322111 11268999999999999999999999999999999975 4
Q ss_pred eeechhHHHHHHHHHhcC
Q 002136 436 TIMPERFEKIYNHWLSNI 453 (961)
Q Consensus 436 ~~~P~~~~~~~~~wl~~l 453 (961)
..+|++.++.-.+||..-
T Consensus 207 ~~wp~~v~~~q~~wig~s 224 (842)
T TIGR00396 207 DHWPESVKEMQRNWIGKS 224 (842)
T ss_pred ccccHHHHHHHHhccccc
Confidence 469999999999999543
No 126
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=91.71 E-value=0.11 Score=58.44 Aligned_cols=90 Identities=18% Similarity=0.161 Sum_probs=52.8
Q ss_pred CCcceEeeeccccc-cHHHHHHHHHhHh-cC---CCCceEEEEece---EEcCCCccccccCCC-ccCchhhhhhcChhH
Q 002136 538 YPTTMLETGHDILF-FWVARMVMMGIEF-TG---SVPFSHVYLHGL---IRDSQGRKMSKTLGN-VIDPIDTIKEFGADA 608 (961)
Q Consensus 538 ~P~d~~~~G~Dil~-fw~~~~i~~~~~l-~~---~~Pfk~v~~hg~---v~d~~G~KMSKS~GN-vI~p~dii~~yGaDa 608 (961)
|-+|+...|.||.. +=++|-++..+.. .| ..| ..++|.+ +...+|+|||||.+| .|...| ..|.
T Consensus 138 ~~~d~vpvG~DQ~~h~elaRdia~r~n~~~~~~f~~P--~~l~~~~~~~l~gl~~~KMSKS~~~s~I~L~D-----~~e~ 210 (328)
T TIGR00233 138 YQADLVPVGIDQDQHLELTRDLAERFNKKFKNFFPKP--ESLISKFFPRLMGLSGKKMSKSDPNSAIFLTD-----TPKQ 210 (328)
T ss_pred cCCCeeecccccHHHHHHHHHHHHHhhhhcCcccCCC--hhhhccccCCCCCCCCCcCCCCCCCCeEeecC-----CHHH
Confidence 34678888999974 4455555443321 01 345 3444544 445567899999997 887766 5666
Q ss_pred HHHHHHhC-CC-CCccccCHHHHHHHHH
Q 002136 609 LRFTISLG-TA-GQDLSLSIERLTANKA 634 (961)
Q Consensus 609 lR~~L~~~-~~-~~D~~f~~~~~~~~~~ 634 (961)
++=-+.++ .+ +..+.++...-.++.+
T Consensus 211 I~~KI~~a~td~~~~~~~~~~~~~g~~~ 238 (328)
T TIGR00233 211 IKKKIRKAATDGGRVTLFEHREKGGVPN 238 (328)
T ss_pred HHHHHHhcCCCCCCCcccCcCCCCCCch
Confidence 66655543 22 5556665544443333
No 127
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=91.47 E-value=0.22 Score=56.19 Aligned_cols=58 Identities=26% Similarity=0.210 Sum_probs=41.2
Q ss_pred CCcceEeeeccccc-cHHHHHHHHHhHhcCCCCceEEEEeceEEcCCCc--cccccC-CCccCchh
Q 002136 538 YPTTMLETGHDILF-FWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGR--KMSKTL-GNVIDPID 599 (961)
Q Consensus 538 ~P~d~~~~G~Dil~-fw~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G~--KMSKS~-GNvI~p~d 599 (961)
|.+|+...|.||.. +=++|-++-. +....| ..+.|.++.+.+|. |||||. ||.|...|
T Consensus 167 ~~ad~vpvG~DQ~~h~~l~Rdia~~--~n~~~p--~~l~~~~l~~L~g~~~KMSKS~p~~~I~L~D 228 (329)
T PRK08560 167 LDVDIAVGGMDQRKIHMLAREVLPK--LGYKKP--VCIHTPLLTGLDGGGIKMSKSKPGSAIFVHD 228 (329)
T ss_pred hCCCEEEechhHHHHHHHHHHhhHh--cCCCCc--eEEEcCccCCCCCCCCCCcCCCCCCeecccC
Confidence 45788899999975 3333433322 233355 45568899888987 999999 99998876
No 128
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=90.90 E-value=0.2 Score=55.33 Aligned_cols=58 Identities=22% Similarity=0.235 Sum_probs=38.0
Q ss_pred cceEeeeccccc-cHHHHHHHHHhHhc----CCCCceEEEEec--eEEcCCC-ccccccCCC-ccCchh
Q 002136 540 TTMLETGHDILF-FWVARMVMMGIEFT----GSVPFSHVYLHG--LIRDSQG-RKMSKTLGN-VIDPID 599 (961)
Q Consensus 540 ~d~~~~G~Dil~-fw~~~~i~~~~~l~----~~~Pfk~v~~hg--~v~d~~G-~KMSKS~GN-vI~p~d 599 (961)
+++...|.||-. .=++|-++..+... -..| ..+.|. .+.+.+| +|||||.+| +|...|
T Consensus 146 a~~VPVG~DQ~qHleLtRDiA~rfn~~y~~~f~~P--~~~~~~~~~i~gL~g~~KMSkS~~ns~I~L~D 212 (314)
T COG0180 146 ATLVPVGEDQDQHLELTRDIARRFNHLYGEVFPLP--EALISKVARLPGLDGPGKMSKSDPNSAIFLLD 212 (314)
T ss_pred CCeeccCCCchHHHHHHHHHHHHHHhhcCCccCCc--cccccCCCcccCCCCCCcccccCCCCeeeccC
Confidence 456667999874 34455555433211 1234 566777 8888999 899999999 776544
No 129
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=90.73 E-value=0.49 Score=59.91 Aligned_cols=101 Identities=23% Similarity=0.385 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHcCCccccccc--------------cccCCcccCCCCceeeeeccceeeeccHHHHHHHHHHHcCCce
Q 002136 371 FEARKKLWSDLEETGLAVKKEPH--------------TLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELT 436 (961)
Q Consensus 371 ~~ar~~i~~~L~~~g~~~~~~~~--------------~~~~p~~~r~~~~v~~~~~~qwF~~~~~~~~~~~~~~~~~~~~ 436 (961)
.++-+.+...|-++|++...+.. +...++|+|||.+++.+..+|||++++++++++++.++... .
T Consensus 132 ~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~La~~ev~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~L~~~l~~~~-~ 210 (805)
T PRK00390 132 YKWTQWIFLKLYEKGLAYRKESPVNWCPVDGTVLANEQVIDGRCWRCGAPVEKKELRQWFLKITDYADELLDDLDKLE-D 210 (805)
T ss_pred HHHHHHHHHHHHHCCCEEEecCEEEecCCcCCCCCHHHhhCCeecccCCeeEEEecceeeEecchhHHHHHHHHHhhc-c
Confidence 46667888999999988653322 22246799999999999999999999999999999987533 3
Q ss_pred eechhHHHHHHHHHhcCCCceeeecc-CCCcccceEEE
Q 002136 437 IMPERFEKIYNHWLSNIKDWCISRQL-WWGHRIPVWYI 473 (961)
Q Consensus 437 ~~P~~~~~~~~~wl~~l~DW~ISRq~-~WG~pIP~~~~ 473 (961)
+|++.+..-.+||..-.-+.|.=.. .-+..|++|.-
T Consensus 211 -w~~~v~~~~~~wig~~~~~~i~f~~~~~~~~l~v~TT 247 (805)
T PRK00390 211 -WPEKVKTMQRNWIGRSEGAEVTFKVEDSDEKIEVFTT 247 (805)
T ss_pred -CcHHHHHHHHhhccccceEEEEEEccCCCCEEEEEeC
Confidence 5999998889998644444332111 11245666653
No 130
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=90.19 E-value=0.26 Score=55.52 Aligned_cols=61 Identities=30% Similarity=0.401 Sum_probs=39.2
Q ss_pred CCcceEeeeccccc-cHHHHHHHHHhHh-cCC----CCceEEEE-eceEEcCCC-ccccccCCCccCchh
Q 002136 538 YPTTMLETGHDILF-FWVARMVMMGIEF-TGS----VPFSHVYL-HGLIRDSQG-RKMSKTLGNVIDPID 599 (961)
Q Consensus 538 ~P~d~~~~G~Dil~-fw~~~~i~~~~~l-~~~----~Pfk~v~~-hg~v~d~~G-~KMSKS~GNvI~p~d 599 (961)
|.+|+...|.||.. +=++|-++-.+.. .++ .| +.+.. |.++.+.+| .|||||.+|.|...|
T Consensus 141 ~~~d~vpvG~DQ~~h~~laRdiA~~~n~~~~~~~~~~p-~~~~~~~~~i~~L~g~~KMSKS~~~~I~L~D 209 (333)
T PRK12282 141 FKATLVPVGDDQLPMIEQTREIVRRFNSLYGTDVLVEP-EALLPEAGRLPGLDGKAKMSKSLGNAIYLSD 209 (333)
T ss_pred hCCCEEEeccccHHHHHHHHHHHHHHhhhcCCccccCc-hhcccCCCcccCCCCCCcCCCCCCCeeeeeC
Confidence 56889999999974 4455655543331 121 12 11211 456777777 899999999997766
No 131
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=89.63 E-value=0.23 Score=56.61 Aligned_cols=61 Identities=20% Similarity=0.239 Sum_probs=42.2
Q ss_pred HHHHhCCCCCCCCC--------CCCCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCC
Q 002136 73 NWWESQGYFKPNFE--------RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDH 138 (961)
Q Consensus 73 ~~W~~~~~f~~~~~--------~~~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~ 138 (961)
-.+.++|+|-...+ ..+++|.+.++ --|||.+||||... -..+++++. .|++|.+..+=+|
T Consensus 40 h~~~rR~~~~~hrd~d~il~~~~~~~~~~iytG-~~PSG~lHLGh~~~---~~~~~~lQ~-~g~~~~i~IaD~h 108 (368)
T PRK12285 40 HPLMRRGIIFGHRDYDKILEAYRNGKPFAVYTG-FMPSGPMHIGHKMV---FDELKWHQE-FGANVYIPIADDE 108 (368)
T ss_pred chHHhcCeeeecCCHHHHHHHHhcCCCeEEEEc-cCCCCCccHHHHHH---HHHHHHHHh-cCCCEEEEecchH
Confidence 45667777754332 13567888888 67899999999753 445666666 7889877766555
No 132
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=89.47 E-value=0.25 Score=56.52 Aligned_cols=54 Identities=17% Similarity=0.107 Sum_probs=35.8
Q ss_pred CcceEeeeccccccHHHHHHHHHhHh-cCCCCceEEEEeceEEcCCCccccccCCCccC
Q 002136 539 PTTMLETGHDILFFWVARMVMMGIEF-TGSVPFSHVYLHGLIRDSQGRKMSKTLGNVID 596 (961)
Q Consensus 539 P~d~~~~G~Dil~fw~~~~i~~~~~l-~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~ 596 (961)
-.|+.++|.||- ...++..-+.- .|..+ ...+.+.++.+.+|.|||||.||.++
T Consensus 180 ~~dlq~GG~DQ~---~ni~~grdl~rr~g~~~-~~~lt~PLL~~ldG~KmgKs~~~a~~ 234 (401)
T COG0162 180 NKDLQLGGSDQW---GNILAGRDLIRRLGQKK-VVGLTTPLLTGLDGKKMGKSEGGAVW 234 (401)
T ss_pred ccchhcCChHHH---HHHHHHHHHHHHhCCCC-eEEEEeccccCCCCCcccccCCCceE
Confidence 367999999994 44333322211 12333 35677888889999999999999443
No 133
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=89.44 E-value=2.1 Score=37.70 Aligned_cols=62 Identities=19% Similarity=0.431 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
+..||.+++++++.+...++.++.+|..+.- |++-.+.-.+.+..+.+++...++.|..|+.
T Consensus 3 V~~eId~lEekl~~cr~~le~ve~rL~~~eL----s~e~R~~lE~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 3 VAKEIDGLEEKLAQCRRRLEAVESRLRRREL----SPEARRSLEKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHcccCC----ChHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 6789999999999999999999999998766 5555555556666677777777777666654
No 134
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=89.23 E-value=0.37 Score=53.04 Aligned_cols=70 Identities=21% Similarity=0.175 Sum_probs=43.2
Q ss_pred CcceEeeecccccc-HHHHHHHHHhHhc----CCCCceEEEEe--ceEEcCCC--ccccccCC-CccCchhhhhhcChhH
Q 002136 539 PTTMLETGHDILFF-WVARMVMMGIEFT----GSVPFSHVYLH--GLIRDSQG--RKMSKTLG-NVIDPIDTIKEFGADA 608 (961)
Q Consensus 539 P~d~~~~G~Dil~f-w~~~~i~~~~~l~----~~~Pfk~v~~h--g~v~d~~G--~KMSKS~G-NvI~p~dii~~yGaDa 608 (961)
-+++...|.||... =++|-++..+... -..| ..++| .++...+| .|||||.| |.|...| .+|.
T Consensus 137 ~~~~vpvG~DQ~~h~~l~Rdia~r~n~~~~~~~~~P--~~l~~~~~~i~~l~g~~~KMSKS~~~~~I~L~d-----~~~~ 209 (280)
T cd00806 137 KACLVPVGIDQDPHLELTRDIARRFNKLYGEIFPKP--AALLSKGAFLPGLQGPSKKMSKSDPNNAIFLTD-----SPKE 209 (280)
T ss_pred cCCEEeeccccHHHHHHHHHHHHHhccccccccCCC--eeeccCCCccccCCCCCCcccCCCCCCeEEeeC-----CHHH
Confidence 35777779999642 3333333322210 1244 55667 88877777 59999999 9998776 5555
Q ss_pred HHHHHHh
Q 002136 609 LRFTISL 615 (961)
Q Consensus 609 lR~~L~~ 615 (961)
+|=-+..
T Consensus 210 i~~KI~~ 216 (280)
T cd00806 210 IKKKIMK 216 (280)
T ss_pred HHHHHHh
Confidence 5544443
No 135
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=89.20 E-value=0.4 Score=54.98 Aligned_cols=70 Identities=20% Similarity=0.118 Sum_probs=43.5
Q ss_pred CCcceEeeecccc-ccHHHHHHHHHhHhcCCCCceEEEEeceEEcC-CC-ccccccCCC-ccCchhhhhhcChhHHHHHH
Q 002136 538 YPTTMLETGHDIL-FFWVARMVMMGIEFTGSVPFSHVYLHGLIRDS-QG-RKMSKTLGN-VIDPIDTIKEFGADALRFTI 613 (961)
Q Consensus 538 ~P~d~~~~G~Dil-~fw~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~-~G-~KMSKS~GN-vI~p~dii~~yGaDalR~~L 613 (961)
+.+|+...|.||. ++=++|-++-.+ +..+-.-+..|.++... +| .|||||.+| .|...| .++.+|=-+
T Consensus 209 l~adivpvG~DQ~~~~~LaRdia~~~---~~~~~~~~~~~~~lpgL~dg~~KMSKS~~ns~I~L~D-----spe~I~kKI 280 (383)
T PTZ00126 209 LKADICQLGMDQRKVNMLAREYCDKK---KIKKKPIILSHHMLPGLLEGQEKMSKSDPNSAIFMED-----SEEDVNRKI 280 (383)
T ss_pred cCCCEEEeCccHHHHHHHHHHHHHHh---CCCCCceeecccccccCCCCCCCCCcCCCCCeecCCC-----CHHHHHHHH
Confidence 4578888999994 444455444332 22111134467888877 35 799999988 587766 555555544
Q ss_pred Hh
Q 002136 614 SL 615 (961)
Q Consensus 614 ~~ 615 (961)
.+
T Consensus 281 ~k 282 (383)
T PTZ00126 281 KK 282 (383)
T ss_pred Hh
Confidence 43
No 136
>PLN02486 aminoacyl-tRNA ligase
Probab=88.90 E-value=1.8 Score=49.72 Aligned_cols=58 Identities=17% Similarity=0.218 Sum_probs=38.6
Q ss_pred HHhCCCCCCCCC--------CCCCCEEEeCCCCCcCC-CCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCC
Q 002136 75 WESQGYFKPNFE--------RGSDPFVISMPPPNVTG-SLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTD 137 (961)
Q Consensus 75 W~~~~~f~~~~~--------~~~~~f~i~~ppPy~nG-~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D 137 (961)
|.++|+|-...+ ..+++|++.+| --||| .+||||+... ..+..+++..|..+... -+|
T Consensus 49 ~lrRgi~~~hrd~~~~l~~~e~~~~~~vYtG-~~PSg~~lHlGHlv~~---~~~~~lQ~~~~~~~~I~-iaD 115 (383)
T PLN02486 49 FLRRGVFFAHRDLEEILDAYEKGEKFYLYTG-RGPSSEALHLGHLIPF---MFTKYLQDAFKVPLVIQ-LTD 115 (383)
T ss_pred ccccceeeeccCHHHHHHHHhcCCCeEEEeC-CCCCCccccHHHHHHH---HHHHHHHHhCCCeEEEE-ecC
Confidence 667777755433 23678999998 78999 5999996553 34445566667666555 445
No 137
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=87.99 E-value=1.5 Score=50.15 Aligned_cols=69 Identities=19% Similarity=0.205 Sum_probs=40.8
Q ss_pred cceEeeeccccc-cHHHHHHHHHhH--hcCCCCceEEEEeceEEcCCCccccccC-CCccCchhhhhhcChhHHHHHHHh
Q 002136 540 TTMLETGHDILF-FWVARMVMMGIE--FTGSVPFSHVYLHGLIRDSQGRKMSKTL-GNVIDPIDTIKEFGADALRFTISL 615 (961)
Q Consensus 540 ~d~~~~G~Dil~-fw~~~~i~~~~~--l~~~~Pfk~v~~hg~v~d~~G~KMSKS~-GNvI~p~dii~~yGaDalR~~L~~ 615 (961)
.++...|.||.. +=++|-++-.+. +.-..| ..+.|.++...+|.|||||. +|.|...| .++.++=-+.+
T Consensus 204 ~~lvPvG~DQ~~h~~ltRdiA~r~n~~~gf~~P--~~l~~~~lpgL~G~KMSkS~~~s~I~L~D-----~p~~I~kKI~k 276 (368)
T PRK12285 204 PTLVPVGIDQDPHIRLTRDIAERLHGGYGFIKP--SSTYHKFMPGLTGGKMSSSKPESAIYLTD-----DPETVKKKIMK 276 (368)
T ss_pred ceEEEeccchHHHHHHHHHHHHHHhhhcCCCCc--hhHhhhcccCCCCCcCCCCCCCCeeeccC-----CHHHHHHHHHh
Confidence 445666777763 334444443320 011234 33456678788999999998 67998766 45555544443
No 138
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=87.63 E-value=0.56 Score=53.84 Aligned_cols=57 Identities=18% Similarity=0.042 Sum_probs=35.1
Q ss_pred cceEeeeccccccHHHHHHHHHhHhcCCCCceEEEEeceEEcCCCccccccCCCccCchh
Q 002136 540 TTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPID 599 (961)
Q Consensus 540 ~d~~~~G~Dil~fw~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~d 599 (961)
.|+.+.|.||...--. ...+.-.+.++.+| .+.+.++...+|.|||||.||.|+..+
T Consensus 178 ~di~~gG~DQ~~ni~~-g~dLar~~~~~~~~--~~t~pLl~~~dg~KmgKS~~~~i~l~~ 234 (377)
T TIGR00234 178 VDLQIGGSDQWGNIRK-GRDLIRRNLPSLGF--GLTVPLLTPADGEKMGKSGGGAVSLDE 234 (377)
T ss_pred CCeeEecchhHHHHHH-HHHHHHHhcCCCce--eeceeeecCCCCCCccCCCCCcccCCc
Confidence 6788999999653111 11222222333333 244556666789999999999987544
No 139
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=87.48 E-value=0.4 Score=56.77 Aligned_cols=77 Identities=26% Similarity=0.424 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHcCCcccccccc---------------ccCCcccCCCCceeeeeccceeeeccHHHHHHHHHHHcCCce
Q 002136 372 EARKKLWSDLEETGLAVKKEPHT---------------LRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELT 436 (961)
Q Consensus 372 ~ar~~i~~~L~~~g~~~~~~~~~---------------~~~p~~~r~~~~v~~~~~~qwF~~~~~~~~~~~~~~~~~~~~ 436 (961)
.=-+-|.-.|-+.||.-..|... -..+.+||||.+||...-.||||+++++++++++.++. +.
T Consensus 158 KWTQwiFlkLfe~GLAYq~Ea~VNWDPvD~TVLAnEQVD~~G~SWRSGA~VEkK~LrQWfikttaYAk~L~d~L~~--L~ 235 (876)
T KOG0435|consen 158 KWTQWIFLKLFEKGLAYQAEAEVNWDPVDKTVLANEQVDADGCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGLET--LP 235 (876)
T ss_pred HHHHHHHHHHHHhhhhhccccccccCcccceeecchhhcccCccccccchhhHHHHHHHHhhhhHHHHHHHHHHHh--hh
Confidence 33456777788888875443221 13466899999999999999999999999999999973 33
Q ss_pred eechhHHHHHHHHHh
Q 002136 437 IMPERFEKIYNHWLS 451 (961)
Q Consensus 437 ~~P~~~~~~~~~wl~ 451 (961)
=.|+ .++.=.||+.
T Consensus 236 ~W~~-vk~mQrnWIG 249 (876)
T KOG0435|consen 236 EWPE-VKDMQRNWIG 249 (876)
T ss_pred hhhh-HHHHHHhhcc
Confidence 3555 6777788884
No 140
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=86.30 E-value=0.52 Score=53.24 Aligned_cols=72 Identities=22% Similarity=0.280 Sum_probs=45.4
Q ss_pred CCcceEeeeccccc-cHHHHHHHHHhHh-cC---CCCceEEEE-e-ceEEcCCCc--cccccCC---CccCchhhhhhcC
Q 002136 538 YPTTMLETGHDILF-FWVARMVMMGIEF-TG---SVPFSHVYL-H-GLIRDSQGR--KMSKTLG---NVIDPIDTIKEFG 605 (961)
Q Consensus 538 ~P~d~~~~G~Dil~-fw~~~~i~~~~~l-~~---~~Pfk~v~~-h-g~v~d~~G~--KMSKS~G---NvI~p~dii~~yG 605 (961)
|.+|+...|.||.. +=++|-++..+.. .| ..| .-++. | .++...+|. |||||.+ |.|...| .
T Consensus 137 ~~~divpvG~DQ~~h~elaRdia~~~n~~~~~~f~~P-~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D-----~ 210 (333)
T PRK00927 137 YKADLVPVGEDQKQHLELTRDIARRFNNLYGEVFPVP-EPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLD-----D 210 (333)
T ss_pred cCCCEEeeccchHHHHHHHHHHHHHhhhhccccCCCC-hhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeC-----C
Confidence 45788899999974 4455555433221 11 245 33332 2 567777876 9999999 8998766 5
Q ss_pred hhHHHHHHHh
Q 002136 606 ADALRFTISL 615 (961)
Q Consensus 606 aDalR~~L~~ 615 (961)
+|.++=-+.+
T Consensus 211 ~~~I~~KI~~ 220 (333)
T PRK00927 211 PKTIAKKIKK 220 (333)
T ss_pred HHHHHHHHHh
Confidence 5665555544
No 141
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=85.17 E-value=1.4 Score=48.48 Aligned_cols=36 Identities=25% Similarity=0.316 Sum_probs=23.9
Q ss_pred CcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCC
Q 002136 100 NVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDH 138 (961)
Q Consensus 100 y~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~ 138 (961)
-|||.|||||..+.+.. +.++++. |+++.+..+=+|
T Consensus 7 ~PTG~lHLG~~~~al~~--~~~lQ~a-g~~~~~~IaD~h 42 (280)
T cd00806 7 QPSGSLHLGHYLGAFRF--WVWLQEA-GYELFFFIADLH 42 (280)
T ss_pred CCCchhhHHHHHHHHHH--HHHHHhC-CCCEEEEecchH
Confidence 45999999999884432 3333333 889877766444
No 142
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=85.13 E-value=2.1 Score=49.85 Aligned_cols=59 Identities=19% Similarity=0.298 Sum_probs=51.4
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002136 888 VDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTV 957 (961)
Q Consensus 888 id~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~ 957 (961)
+|..+-++.+++++.++++++++++.+|..-. +.+.|+.+++.+++++++.++++++++
T Consensus 238 l~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~-----------k~~~k~~~~~~q~~~~~k~~~~~~~~~ 296 (406)
T PF02388_consen 238 LNGKEYLESLQEKLEKLEKEIEKLEEKLEKNP-----------KKKNKLKELEEQLASLEKRIEEAEELI 296 (406)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-----------chhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999875433 677889999999999999999988864
No 143
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=84.54 E-value=1.3 Score=48.53 Aligned_cols=34 Identities=29% Similarity=0.474 Sum_probs=24.1
Q ss_pred cCC-CCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCC
Q 002136 101 VTG-SLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDH 138 (961)
Q Consensus 101 ~nG-~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~ 138 (961)
||| .|||||..+ -..+.++++ .|+++.+..|-.|
T Consensus 8 PTg~~lHlGh~~~---l~~~~~lq~-~g~~~~~~I~d~~ 42 (273)
T cd00395 8 PTADSLHIGHLIG---LLTFRRFQH-AGHRPIFLIGGQT 42 (273)
T ss_pred CCCCCccHHHHHH---HHHHHHHHH-CCCCEEEEEecCc
Confidence 599 699999887 234455554 6999988776433
No 144
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=83.69 E-value=1.9 Score=45.41 Aligned_cols=50 Identities=18% Similarity=0.086 Sum_probs=31.7
Q ss_pred eEeeeccccccHHHHHHHHHhHhcCC-CCceEEEEeceEEcCCCccccccCC
Q 002136 542 MLETGHDILFFWVARMVMMGIEFTGS-VPFSHVYLHGLIRDSQGRKMSKTLG 592 (961)
Q Consensus 542 ~~~~G~Dil~fw~~~~i~~~~~l~~~-~Pfk~v~~hg~v~d~~G~KMSKS~G 592 (961)
+++.|.|+.. ++.++..+.-.+.-. .|--..+.+|+|+..+|.||||+.|
T Consensus 162 i~v~g~~~~~-~~~~~~~~~~~lg~~~~~~~~h~~~~~v~~~~~~kmS~R~G 212 (212)
T cd00671 162 IYVVGADHHG-HFKRLFAALELLGYDEAKKLEHLLYGMVNLPKEGKMSTRAG 212 (212)
T ss_pred EEEECCCHHH-HHHHHHHHHHHcCCCCCCCeEEEEEEeEEcCCCCCCCCCCC
Confidence 5689999653 444444333333212 2323556679999777999999987
No 145
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=82.72 E-value=4.4 Score=43.20 Aligned_cols=54 Identities=20% Similarity=0.164 Sum_probs=40.3
Q ss_pred ceEEcCCCccccccCCC------cc----Cc-----hhhhh-hcChhHHHHHHHhCCC-CCccccCHHHHHH
Q 002136 577 GLIRDSQGRKMSKTLGN------VI----DP-----IDTIK-EFGADALRFTISLGTA-GQDLSLSIERLTA 631 (961)
Q Consensus 577 g~v~d~~G~KMSKS~GN------vI----~p-----~dii~-~yGaDalR~~L~~~~~-~~D~~f~~~~~~~ 631 (961)
+++ +.+|.||||+.+- .+ +| ..+.. .|-++|++=|++..+. ..|..|+++.+..
T Consensus 156 ~hl-n~~g~kLSKR~~~~~i~~g~~~~wddpr~~~~~~l~~~G~~peal~~~l~~lG~s~~~~~~~~~~l~~ 226 (238)
T cd00807 156 SRL-NLTYTVMSKRKLLQLVDEGYVDGWDDPRLPTLRGLRRRGVTPEAIRQFILRQGVSKADSTIDWDKLEA 226 (238)
T ss_pred EEE-CCCCCCccCcCchhccccCCcccccCcchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHH
Confidence 445 7999999999852 12 11 22222 3778999999998888 8999999999886
No 146
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=82.60 E-value=0.56 Score=53.54 Aligned_cols=35 Identities=26% Similarity=0.364 Sum_probs=27.0
Q ss_pred eceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHh
Q 002136 576 HGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISL 615 (961)
Q Consensus 576 hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~ 615 (961)
|..|.+.+|+|||||.+|.|...| .+|.+|=-+..
T Consensus 254 ~~~I~gLdg~KMSKS~~n~I~L~D-----s~~~I~kKI~~ 288 (398)
T PRK12283 254 ASKMPGLDGQKMSKSYGNTIGLRE-----DPESVTKKIRT 288 (398)
T ss_pred CCcccCCCCCcCCCCCCCeeeCcC-----CHHHHHHHHHh
Confidence 667778899999999999998766 56666655544
No 147
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=82.31 E-value=1.9 Score=50.08 Aligned_cols=45 Identities=24% Similarity=0.372 Sum_probs=30.9
Q ss_pred CCCEEEeCCCCCcCC-CCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCC
Q 002136 89 SDPFVISMPPPNVTG-SLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDH 138 (961)
Q Consensus 89 ~~~f~i~~ppPy~nG-~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~ 138 (961)
++++.+.++ --||| +|||||+... -.+.+++ ..|++++++.|--+
T Consensus 31 ~~~~~iy~G-~dPT~~sLHlGhlv~l---~~l~~lq-~~G~~~~~ligd~t 76 (410)
T PRK13354 31 GKPLTLYLG-FDPTAPSLHIGHLVPL---MKLKRFQ-DAGHRPVILIGGFT 76 (410)
T ss_pred CCCcEEEEc-ccCCCCCcchhhHHHH---HHHHHHH-HcCCeEEEEEcccc
Confidence 456777777 67799 5999995542 2244444 57999988877655
No 148
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=82.28 E-value=1 Score=49.24 Aligned_cols=73 Identities=22% Similarity=0.260 Sum_probs=43.7
Q ss_pred CcCC-CCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCC--ccccCHHHHHHHHHHHHHH
Q 002136 100 NVTG-SLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIK--RVELSRDEFTKRVWEWKEK 176 (961)
Q Consensus 100 y~nG-~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~--~~~~~~~~f~~~~~~~~~~ 176 (961)
-||| .|||||.... -.+.|++++ |++|.+..|-.|+=+- ...|++ +.....++. .+
T Consensus 8 ~PTg~~lHLG~~~~~---~~~~~lq~~-g~~~~ilI~D~~a~~~---------~~~~~~~~r~~~~~~~i--------~~ 66 (269)
T cd00805 8 DPTAPSLHLGHLVPL---MKLRDFQQA-GHEVIVLIGDATAMIG---------DPSGKSEERKLLDLELI--------RE 66 (269)
T ss_pred CCCCCcccHHHHHHH---HHHHHHHHC-CCeEEEEECCCeeecC---------CCCCccccccCCCHHHH--------HH
Confidence 3599 8999998752 367888876 9998887775443110 001211 111222222 34
Q ss_pred HHHHHHHHHHHhCCccC
Q 002136 177 YGGTITSQIKRLGASCD 193 (961)
Q Consensus 177 ~~~~i~~~l~~lG~s~D 193 (961)
+...+..++..+|...|
T Consensus 67 ~~~~~~~~~~a~g~~~~ 83 (269)
T cd00805 67 NAKYYKKQLKAILDFIP 83 (269)
T ss_pred HHHHHHHHHHHHHccCC
Confidence 55667889999997643
No 149
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=82.24 E-value=2.2 Score=48.08 Aligned_cols=44 Identities=16% Similarity=0.225 Sum_probs=28.7
Q ss_pred CCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCC
Q 002136 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDH 138 (961)
Q Consensus 90 ~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~ 138 (961)
+++.+.++ --|||.+||||.. .+.. ++++++. |++|.+..|=.|
T Consensus 29 ~~~~v~~G-~~PTG~lHLG~~~-~~~~--~~~lq~~-g~~~~i~IaD~h 72 (329)
T PRK08560 29 EEPKAYIG-FEPSGKIHLGHLL-TMNK--LADLQKA-GFKVTVLLADWH 72 (329)
T ss_pred CCCEEEEc-cCCCCcchhhhhH-HHHH--HHHHHHC-CCeEEEEEccch
Confidence 44555565 5679999999955 2222 6666663 888776655443
No 150
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=78.82 E-value=5.1 Score=42.88 Aligned_cols=64 Identities=20% Similarity=0.163 Sum_probs=44.2
Q ss_pred EEEEeceEEcCCCccccccCCC------cc---------Cchhhhh-hcChhHHHHHHHhCCC-CCccccCHHHHHH-HH
Q 002136 572 HVYLHGLIRDSQGRKMSKTLGN------VI---------DPIDTIK-EFGADALRFTISLGTA-GQDLSLSIERLTA-NK 633 (961)
Q Consensus 572 ~v~~hg~v~d~~G~KMSKS~GN------vI---------~p~dii~-~yGaDalR~~L~~~~~-~~D~~f~~~~~~~-~~ 633 (961)
...-++.+. .+|+||||+.+. .+ +...+.+ .|-++|++-|++..+. ..+..++++.+.. ++
T Consensus 153 ~~~H~pll~-~~~~kLSKR~~~~~i~~~~~~~w~dp~~~~~~~lr~~G~~p~ai~~~~~~lG~s~~~~~~~~~~l~~~~r 231 (240)
T cd09287 153 ETIHWGRLK-IEGGKLSTSKIRKGIESGEYEGWDDPRLPTLRALRRRGIRPEAIRDFIIEVGVKQTDATISWENLYAINR 231 (240)
T ss_pred cEEeeeeec-CCCCeeccccccccccccccccccCcchHHHHHHHHCCCCHHHHHHHHHHhCCCCCCCccCHHHHHHHHH
Confidence 455566776 568999999852 11 2223322 3778999999888777 8899999988876 44
Q ss_pred HHH
Q 002136 634 AFT 636 (961)
Q Consensus 634 ~~~ 636 (961)
+.+
T Consensus 232 ~~l 234 (240)
T cd09287 232 KLI 234 (240)
T ss_pred HHh
Confidence 443
No 151
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A.
Probab=78.61 E-value=11 Score=35.25 Aligned_cols=78 Identities=14% Similarity=0.218 Sum_probs=55.9
Q ss_pred CchhHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhhHHHHHHhhhhhccCCCh---HHHHHHHHHHHHHHHHH
Q 002136 677 PLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYD---SDAIIAQAVLLYIFENI 753 (961)
Q Consensus 677 ~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~i~~f~~~~~~n~Yle~~K~~l~~~~~~---~~~~~~~~~l~~vl~~~ 753 (961)
+..++-++..+..+...+..+++.++++.++..++++. ..|+.+| + +.++..+++. ..|......+..++..+
T Consensus 32 ~~~e~~L~~~l~~~~~~l~~a~~~~~p~~l~~yL~~La-~~f~~fy-~--~~~I~~~~~~~~~~~RL~Ll~~v~~vl~~~ 107 (119)
T PF05746_consen 32 EEEERELLKQLARFPDVLEKAAKDLEPHKLCDYLYELA-QAFNSFY-D--NVRILDEDEEIRKNNRLALLKAVRQVLKNG 107 (119)
T ss_dssp SHHHHHHHHHHCTHHHHHHHHHHHT-CHHHHHHHHHHH-HHHHHHH-H--HS-STTSTTCHH-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHH-h--hccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 44678889999999999999999999999999999997 5777777 2 3344444333 23445555566677777
Q ss_pred HHHhC
Q 002136 754 LKLLH 758 (961)
Q Consensus 754 l~LL~ 758 (961)
+.||.
T Consensus 108 l~llg 112 (119)
T PF05746_consen 108 LDLLG 112 (119)
T ss_dssp HHHTT
T ss_pred HHHcC
Confidence 77765
No 152
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=78.57 E-value=14 Score=43.13 Aligned_cols=160 Identities=14% Similarity=0.116 Sum_probs=87.0
Q ss_pred ccccccCCCccCchhhhh----------------------------hcChhHHHHHHHhCCCCCccccCHHHHHHHH-HH
Q 002136 585 RKMSKTLGNVIDPIDTIK----------------------------EFGADALRFTISLGTAGQDLSLSIERLTANK-AF 635 (961)
Q Consensus 585 ~KMSKS~GNvI~p~dii~----------------------------~yGaDalR~~L~~~~~~~D~~f~~~~~~~~~-~~ 635 (961)
.-||..+|+++-..|+++ ..|+-|+..-.+.....++..|+++++-+.. +.
T Consensus 366 ~GmsTRkG~~~fl~dil~e~re~m~e~M~s~~t~~~~~~~~~~vad~lg~sAviv~d~k~rr~s~yeF~w~~~~~~~gdt 445 (567)
T KOG1195|consen 366 QGMSTRKGKVVFLDDILEEAREQMLEVMASNKTKPVQMANPDEVADRLGLSAVIVQDFKGRRISNYEFSWNRVLSFEGDT 445 (567)
T ss_pred ccccccCCceeeHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHhhHHHHHHHHHHHhcccceEEhhhhheecCCc
Confidence 468888888888888877 3456666655554444677777777664310 00
Q ss_pred -HHHHHHHH--HHHHhhCCCCCchhhHHHHHhhccchhhhhcCCCch-hHHHHHHHHHHHHHHHHhhhcCChHHHHHHHH
Q 002136 636 -TNKLWNAG--KFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLP-ECWVVSKLHMLIDTVTASYDKYFFGDVGRETY 711 (961)
Q Consensus 636 -~nkl~N~~--rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-D~~il~~l~~~~~~v~~a~e~~~f~~A~~~i~ 711 (961)
.--.++-+ +-+..+..+... .. + ...+...+... -.-++..|..+.+.+..+++.++....+..+.
T Consensus 446 g~yLQY~HsRL~Slerk~~~~~~-~~---l------~~~d~~~l~ep~~~~Lv~~L~~fp~vve~s~e~lE~~~lV~YL~ 515 (567)
T KOG1195|consen 446 GPYLQYTHSRLRSLERKFSDVTL-DD---L------DEIDFSLLTEPDALLLVRLLLQFPEVVEKSMEQLEPCTLVTYLF 515 (567)
T ss_pred hHHHHHHHHHHHHHHHhccccCc-hh---h------hccchhhcCChhHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHH
Confidence 00001101 112222222211 00 0 01111222222 23467888889999999999999999999998
Q ss_pred HHHHHhhhHHHHHHhhhhhccCCChH--HHHHHHHHHHHHHHHHHHHhC
Q 002136 712 DFFWSDFADWYIEASKARLYRSEYDS--DAIIAQAVLLYIFENILKLLH 758 (961)
Q Consensus 712 ~f~~~~~~n~Yle~~K~~l~~~~~~~--~~~~~~~~l~~vl~~~l~LL~ 758 (961)
.+. ..++..|= .-|+.+...+- .|.........+|.+.+++|.
T Consensus 516 ~La-~a~s~~yk---~l~V~d~~~eia~aRL~Lf~AvRqVL~ngm~lLG 560 (567)
T KOG1195|consen 516 KLA-HAVSSAYK---ILWVKDSPMEIALARLLLFSAVRQVLNNGMRLLG 560 (567)
T ss_pred HHH-HHHHhHHh---heeecCCcHHHHHHHHHHHHHHHHHHHhHHHHhC
Confidence 887 56666662 22333221111 233334444557777777764
No 153
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=77.65 E-value=8.7 Score=47.57 Aligned_cols=64 Identities=14% Similarity=0.230 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 891 SAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLR 954 (961)
Q Consensus 891 ~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~ 954 (961)
.++++++++++++++++++.++..|.+|.+-+..+.....+..+++++++++++.+.+.-++|.
T Consensus 562 ~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~ 625 (638)
T PRK10636 562 RKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQ 625 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567789999999999999999999998775554433344444445555555555544444443
No 154
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=77.48 E-value=4.5 Score=47.06 Aligned_cols=42 Identities=26% Similarity=0.403 Sum_probs=29.0
Q ss_pred CCEEEeCCCCCcCCC-CCCchhhHhHHHHHHHHHHHHcCCCeeecCCC
Q 002136 90 DPFVISMPPPNVTGS-LHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGT 136 (961)
Q Consensus 90 ~~f~i~~ppPy~nG~-LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~ 136 (961)
+++.+.++ --|||. |||||... -..+.++++ .|++++++.|-
T Consensus 32 ~~~~vy~G-~dPTg~slHlGhlv~---l~~l~~lQ~-~G~~~~~ligd 74 (408)
T PRK05912 32 EPLRIYLG-FDPTAPSLHLGHLVP---LLKLRRFQD-AGHKPIALIGG 74 (408)
T ss_pred CCCEEEEe-ecCCCCCccHHhHHH---HHHHHHHHH-CCCcEEEEEcC
Confidence 45666666 567995 99999874 245556655 69998887653
No 155
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=76.88 E-value=10 Score=39.08 Aligned_cols=78 Identities=10% Similarity=0.206 Sum_probs=58.3
Q ss_pred CeEEEecCCCc--cChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 877 GLEAYLPLADM--VDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLR 954 (961)
Q Consensus 877 ~~~~~~~l~~~--id~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~ 954 (961)
...+|=-+.+. ......+++|+++++.++++++.++.++... =..+.+.+-++..-+++++++.+++.+++.|+.+.
T Consensus 52 ssn~YWsFps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~-~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~ 130 (188)
T PF03962_consen 52 SSNYYWSFPSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEA-KKGREESEEREELLEELEELKKELKELKKELEKYS 130 (188)
T ss_pred CeeEEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566444443 3567778889999999999999999888877 33555666777777888888999999988888664
Q ss_pred h
Q 002136 955 S 955 (961)
Q Consensus 955 ~ 955 (961)
.
T Consensus 131 ~ 131 (188)
T PF03962_consen 131 E 131 (188)
T ss_pred h
Confidence 3
No 156
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=76.33 E-value=4.9 Score=46.54 Aligned_cols=98 Identities=12% Similarity=0.117 Sum_probs=55.2
Q ss_pred CcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHH
Q 002136 100 NVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGG 179 (961)
Q Consensus 100 y~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~ 179 (961)
-|||.|||||.++.+-. ..+.+...|++++|... |-|.+- ...++.++ .++..
T Consensus 10 qPTG~lHLGNylGaik~--~v~lq~q~~~~~~~~IA-DlHAlT-----------~~~dp~~l-------------r~~~~ 62 (431)
T PRK12284 10 TTTGTPHLGNYAGAIRP--AIAASRQPGVESFYFLA-DYHALI-----------KCDDPARI-------------QRSTL 62 (431)
T ss_pred cCCCcchHHHHHHHHHH--HHHHHHhCCCcEEEEee-chhhcc-----------CCCCHHHH-------------HHHHH
Confidence 46999999997775532 34444456888766533 444331 01122221 12334
Q ss_pred HHHHHHHHhCCccCCCCCcc-CCChhhHHHHHHHHHHHHhcCceEEc
Q 002136 180 TITSQIKRLGASCDWTRERF-TLDEQLSRAVVEAFIRLHEKGLIYQG 225 (961)
Q Consensus 180 ~i~~~l~~lG~s~Dw~r~~~-T~d~~~~~~v~~~F~~L~~~GlIy~~ 225 (961)
.+...+...|+..+=..-|. +.-|+|. -..|++..+-..|.+-|-
T Consensus 63 e~aa~~LA~GlDPek~~if~QSdvpeh~-EL~wiL~~it~~g~L~Rm 108 (431)
T PRK12284 63 EIAATWLAAGLDPERVTFYRQSDIPEIP-ELTWLLTCVAGKGLLNRA 108 (431)
T ss_pred HHHHHHHHhCCCccceEEEECCcchhHH-HHHHHHHhhhhHHHHHhh
Confidence 45677888887666222222 3345554 457778777777766553
No 157
>PF14282 FlxA: FlxA-like protein
Probab=75.18 E-value=16 Score=33.87 Aligned_cols=57 Identities=16% Similarity=0.287 Sum_probs=38.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 889 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 889 d~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
+.+..+++|++++..|+++|..+..- ...+++. .+++...++.+|..|+..|+.+..
T Consensus 16 ~~~~~I~~L~~Qi~~Lq~ql~~l~~~-------~~~~~e~---k~~q~q~Lq~QI~~LqaQI~qlq~ 72 (106)
T PF14282_consen 16 SSDSQIEQLQKQIKQLQEQLQELSQD-------SDLDAEQ---KQQQIQLLQAQIQQLQAQIAQLQS 72 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcc-------cCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45888999999999999999888663 1223322 245566666666666666665543
No 158
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=74.14 E-value=14 Score=40.22 Aligned_cols=65 Identities=22% Similarity=0.389 Sum_probs=53.2
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002136 888 VDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTV 957 (961)
Q Consensus 888 id~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~ 957 (961)
-|+..+..-++.+++.++++.++++..|...+ -.++ +-+.+.+|.+.+.+|+.++.++..|.+.+
T Consensus 128 ~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~----~~~d-~l~ie~~L~~v~~eIe~~~~~~~~l~~~v 192 (262)
T PF14257_consen 128 EDVTEQYVDLEARLKNLEAEEERLLELLEKAK----TVED-LLEIERELSRVRSEIEQLEGQLKYLDDRV 192 (262)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 48888888999999999999999999887544 3344 55667889999999999999999998754
No 159
>PLN02486 aminoacyl-tRNA ligase
Probab=74.04 E-value=3.1 Score=47.77 Aligned_cols=65 Identities=22% Similarity=0.152 Sum_probs=39.9
Q ss_pred eEeeeccccc-cHHHHHHHHHhHhcCCCCceEEEEeceEEcCCC--ccccccCCC-ccCchhhhhhcChhHHHHHHHh
Q 002136 542 MLETGHDILF-FWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQG--RKMSKTLGN-VIDPIDTIKEFGADALRFTISL 615 (961)
Q Consensus 542 ~~~~G~Dil~-fw~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G--~KMSKS~GN-vI~p~dii~~yGaDalR~~L~~ 615 (961)
+...|.||.. +=++|-++-. +....| .++.|.++....| .|||||.+| .|...| .++.++=.+..
T Consensus 222 lVPvG~DQd~~~~ltRdia~r--~~~~kp--~~~~~~~lp~L~g~~~KMSkS~~nsaI~L~D-----~p~~i~~KI~k 290 (383)
T PLN02486 222 LIPCAIDQDPYFRMTRDVAPR--LGYYKP--ALIESRFFPALQGESGKMSASDPNSAIYVTD-----TPKEIKNKINK 290 (383)
T ss_pred eeecccchHHHHHHHHHHHHH--hCCCCc--ceeccccccCCCCCCCcCcCcCCCCeeeccC-----CHHHHHHHHhc
Confidence 4556888864 3344444332 333356 3334566766676 799999988 688776 55666555544
No 160
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=73.42 E-value=28 Score=30.83 Aligned_cols=60 Identities=22% Similarity=0.375 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
+.++++.|+++..+++++++.+...| ..-|+.+++..-++|.+|.+--..-+.-+-.+..
T Consensus 5 l~~~~~~L~~~~~~l~~~i~~~~~~l------~~~~~~~v~~hI~lLheYNeiKD~gQ~Lig~iA~ 64 (83)
T PF07061_consen 5 LEAEIQELKEQIEQLEKEISELEAEL------IEDPEKIVKRHIKLLHEYNEIKDIGQGLIGLIAD 64 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc------ccCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 56678888888888888888888877 5689999999999999988665555554444443
No 161
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=69.64 E-value=4.1 Score=50.06 Aligned_cols=59 Identities=20% Similarity=0.075 Sum_probs=35.3
Q ss_pred CCcceEeeeccccc-cHHHHHHHHHhHhcCCCCceEEEEeceEEcCCC--ccccccC-CCccCchh
Q 002136 538 YPTTMLETGHDILF-FWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQG--RKMSKTL-GNVIDPID 599 (961)
Q Consensus 538 ~P~d~~~~G~Dil~-fw~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G--~KMSKS~-GNvI~p~d 599 (961)
|.+|+...|.||.. +=++|-++-. .|..|-..+..|.++...+| .|||||. +|.|...|
T Consensus 174 l~adivpvG~DQ~qh~eLaRdia~~---~g~~~kpvil~~~~LpGL~gg~~KMSKS~p~naI~L~D 236 (682)
T PTZ00348 174 LKADICQLGLDQRKVNMLAREYCDL---IGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFMED 236 (682)
T ss_pred cCCCEEEeCccHHHHHHHHHHHHHH---hCCCCCceecccccCcCCCCCCCcCCCCCCCCeecccC
Confidence 45777888999964 3344444332 23222112334666666653 6999999 68997765
No 162
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=69.11 E-value=14 Score=41.87 Aligned_cols=62 Identities=19% Similarity=0.327 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhc--------------cCC---------HHHHHHHHHHHHHHHHHHHHH
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVE--------------KAP---------EDVVRGVQEKAAEAEEKINLT 946 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~--------------kap---------~~vv~~~~~kl~~~~~~l~~~ 946 (961)
...+++.|++|+..|++++..++++|....=.. -|| ++-+.+++++++..+-+.+.|
T Consensus 23 ~a~~i~~L~~ql~aLq~~v~eL~~~laa~~~aa~~gA~~~~~~~a~~~aP~~~a~~~~T~d~~~~~~qqiAn~~lKv~~l 102 (514)
T PF11336_consen 23 TADQIKALQAQLQALQDQVNELRAKLAAKPAAAPGGAAIGPAATAAAAAPSSDAQAGLTNDDATEMRQQIANAQLKVESL 102 (514)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccccccccCCCcccccccChHHHHHHHHHHHhhhhhHHHH
Confidence 456788899999999999999999887643222 235 677788888999988888888
Q ss_pred HHHHH
Q 002136 947 KNRLA 951 (961)
Q Consensus 947 ~~~l~ 951 (961)
+++.+
T Consensus 103 ~da~~ 107 (514)
T PF11336_consen 103 EDAAE 107 (514)
T ss_pred hhHHh
Confidence 88754
No 163
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=68.23 E-value=1e+02 Score=29.26 Aligned_cols=45 Identities=16% Similarity=0.256 Sum_probs=32.4
Q ss_pred cEEEEecCCeEEEecCC-Cc---cChHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 869 SVHLVASEGLEAYLPLA-DM---VDISAEVQRLSKRLSKMQSEYDGLVA 913 (961)
Q Consensus 869 ~v~~~v~~~~~~~~~l~-~~---id~~~e~~rl~k~~~kl~~~~~~~~~ 913 (961)
.+...+.++-.|++++. |. .+.+.-+.-++++++.++++++.+++
T Consensus 60 ~~~~~i~~~~~v~v~iG~~~~ve~~~~eA~~~l~~r~~~l~~~~~~l~~ 108 (129)
T cd00890 60 FVKAEVKDDDKVLVDLGTGVYVEKSLEEAIEFLKKRLETLEKQIEKLEK 108 (129)
T ss_pred EEEEEECCCCEEEEEecCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556667777777 43 37777778888888888888888876
No 164
>PLN02886 aminoacyl-tRNA ligase
Probab=68.16 E-value=5.6 Score=45.59 Aligned_cols=94 Identities=14% Similarity=0.050 Sum_probs=50.2
Q ss_pred CcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHH
Q 002136 100 NVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGG 179 (961)
Q Consensus 100 y~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~ 179 (961)
-|||.+||||.++.+ .-+++++. |+++++.. .|-|-+- ...++. +. .++..
T Consensus 54 qPSG~lHLGnylGai--~~~v~lQ~--~~~~~~~I-ADlHAlt-----------~~~~~~-----~l--------r~~~~ 104 (389)
T PLN02886 54 QPTGSIHLGNYLGAI--KNWVALQE--TYDTFFCV-VDLHAIT-----------LPHDPR-----EL--------GKATR 104 (389)
T ss_pred CCCCccHHHHHHHHH--HHHHHHhc--cCCEEEEE-ecHHHhh-----------CCCCHH-----HH--------HHHHH
Confidence 349999999988755 23444444 88875543 3333221 111222 22 23344
Q ss_pred HHHHHHHHhCCccCCCCCcc-CCChhhHHHHHHHHHHHHhcCceE
Q 002136 180 TITSQIKRLGASCDWTRERF-TLDEQLSRAVVEAFIRLHEKGLIY 223 (961)
Q Consensus 180 ~i~~~l~~lG~s~Dw~r~~~-T~d~~~~~~v~~~F~~L~~~GlIy 223 (961)
.+...+..+|+..+=..-|+ +..++|. -..|++..+..-|.+.
T Consensus 105 ~~~a~~lA~GlDP~ks~if~QS~v~e~~-eL~wil~~~t~~g~L~ 148 (389)
T PLN02886 105 STAAIYLACGIDPSKASVFVQSHVPAHA-ELMWLLSCSTPIGWLN 148 (389)
T ss_pred HHHHHHHHcCcCccceEEEEeCCCchhH-HHHHHHHhhCcHHHHH
Confidence 56778889998776322222 3345554 3456666654444443
No 165
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=65.62 E-value=9.2 Score=37.76 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=18.8
Q ss_pred HHHHHHHcCCCeeecCCCCCCC
Q 002136 119 MVRYHRMKGRPTLWLPGTDHAG 140 (961)
Q Consensus 119 ~~R~~rm~G~~Vl~~~G~D~~G 140 (961)
++||.|+.||+|++..+.++.-
T Consensus 12 Lar~LR~lG~Dt~~~~~~~D~~ 33 (147)
T PF01927_consen 12 LARWLRLLGYDTLYSRDIDDDE 33 (147)
T ss_pred HHHHHHHCCCcEEEeCCCChHH
Confidence 6999999999999999876543
No 166
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=65.54 E-value=4.3 Score=45.88 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=22.2
Q ss_pred CcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCC
Q 002136 100 NVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (961)
Q Consensus 100 y~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G 135 (961)
-|||.|||||..+.+.+ +.+++. +++|.+..+
T Consensus 9 ~PTG~lHLG~~~g~~~~--~~~lQ~--~~~~~~~Ia 40 (333)
T PRK00927 9 QPTGKLHLGNYLGAIKN--WVELQD--EYECFFCIA 40 (333)
T ss_pred CCCccchHHhHHHHHHH--HHHHHh--cCCeEEEEe
Confidence 35999999999876533 555554 377766654
No 167
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=65.49 E-value=4.2 Score=45.87 Aligned_cols=43 Identities=16% Similarity=0.224 Sum_probs=29.4
Q ss_pred CEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCC
Q 002136 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDH 138 (961)
Q Consensus 91 ~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~ 138 (961)
++.+.+| --|||.|||||.++.+. .++....|++|.+..+=.|
T Consensus 2 ~~~v~~G-~~PTG~~HlG~~l~~~~----~~~~~q~~~~~~i~IaD~h 44 (328)
T TIGR00233 2 KFRVLTG-IQPSGKMHLGHYLGAIQ----TKWLQQFGVELFICIADLH 44 (328)
T ss_pred CCEEEEe-eCCCcHhHHHHHHHHHH----HHHHHhCCCCEEEEeecch
Confidence 3455555 56799999999888653 3333456999877766555
No 168
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=64.11 E-value=35 Score=34.41 Aligned_cols=62 Identities=31% Similarity=0.514 Sum_probs=43.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 889 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 889 d~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
+++.++..|+.++..+++++..++..|++ +.+.|.. ++-+.+.++++.+++.++..|+.|++
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~---L~~~~t~--~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEAELAS---LSSEPTN--EELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566777777777777777777777765 3344532 34567778888888888888888876
No 169
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=63.67 E-value=19 Score=39.98 Aligned_cols=90 Identities=9% Similarity=0.045 Sum_probs=50.7
Q ss_pred CCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCC-CeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHH
Q 002136 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGR-PTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTK 168 (961)
Q Consensus 90 ~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~-~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~ 168 (961)
.++.+.++ =-|||.|||||.++.+ -.+++...++ ++++ +=.|-|.+-+ .+... + +
T Consensus 4 ~~~~vlSG-~~PSG~lHLGny~ga~----~~~v~~q~~~~~~f~-~IaDlha~t~----------~~~~~-----~---~ 59 (314)
T COG0180 4 KKFRVLSG-IQPSGKLHLGNYLGAI----RNWVLLQEEYYECFF-FIADLHAITV----------RQDPT-----E---E 59 (314)
T ss_pred CCceEEec-CCCCCCcchhHhHHHH----HHHHHHhcccCceEE-EEecHHHhhc----------CCCCh-----H---H
Confidence 45666666 6779999999999875 3566666664 6544 4456655431 11111 0 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCccCCCCCcc-CCChhhHH
Q 002136 169 RVWEWKEKYGGTITSQIKRLGASCDWTRERF-TLDEQLSR 207 (961)
Q Consensus 169 ~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~-T~d~~~~~ 207 (961)
.. ..+...+..++-.+|+..+=..-|+ +.-++|.+
T Consensus 60 ~l----~~~~~e~~a~~LA~GiDP~k~~if~QS~v~e~~e 95 (314)
T COG0180 60 DL----RQATREVAADYLAVGLDPEKSTIFLQSEVPEHAE 95 (314)
T ss_pred HH----HHHHHHHHHHHHHhccCccccEEEEccCchHHHH
Confidence 11 2334455677788998877433232 34455443
No 170
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=61.57 E-value=14 Score=43.98 Aligned_cols=57 Identities=14% Similarity=0.045 Sum_probs=41.2
Q ss_pred EcCCCccccccCCCc---------------cCchhhhhh-cChhHHHHHHHhCCC-CCccccCHHHHHH-HHHHH
Q 002136 580 RDSQGRKMSKTLGNV---------------IDPIDTIKE-FGADALRFTISLGTA-GQDLSLSIERLTA-NKAFT 636 (961)
Q Consensus 580 ~d~~G~KMSKS~GNv---------------I~p~dii~~-yGaDalR~~L~~~~~-~~D~~f~~~~~~~-~~~~~ 636 (961)
++.+|.||||+++.. .+...+.+. |-++|+|=|++..+. ..|...++..+.+ ++.|.
T Consensus 235 ln~~~~kLSKRk~~~~V~~g~v~GWdDPRl~Ti~~lrrrG~~PeAi~nfl~~lG~s~~~~~~e~~~l~~~~r~f~ 309 (522)
T TIGR00440 235 LNLEGTVLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRRGYTPASIREFCNRIGVTKQDNNIEVVRLESCIREDL 309 (522)
T ss_pred ECCCCCCcccccchhccccCcccCCCCCccccHHHHHHCCCCHHHHHHHHHHhCCCCCCCceehhhHHHHHHHhh
Confidence 578999999999875 245566654 899999999998777 5555556666655 34443
No 171
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=61.20 E-value=32 Score=42.67 Aligned_cols=63 Identities=22% Similarity=0.437 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 892 AEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 892 ~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
++++++++++++++++++.++..|.+|.+.+. ++....+..+++++++++++.+.+.-+++..
T Consensus 568 ~~~~~~e~~i~~le~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 630 (635)
T PRK11147 568 RELEQLPQLLEDLEAEIEALQAQVADADFFSQ-PHEQTQKVLADLADAEQELEVAFERWEELEA 630 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchhhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34899999999999999999999999977543 3335666667777788888877777766653
No 172
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=60.06 E-value=65 Score=27.84 Aligned_cols=57 Identities=11% Similarity=0.158 Sum_probs=46.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 889 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLA 951 (961)
Q Consensus 889 d~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~ 951 (961)
+....+.+++..++.+..-|..++--+.+ +|.........++.+|+.++.++++.++
T Consensus 22 ~r~~~i~~~e~~l~ea~~~l~qMe~E~~~------~p~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 22 QRKSLIREIERDLDEAEELLKQMELEVRS------LPPSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCT------S-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46666788888888888888888776664 4889999999999999999999998775
No 173
>PLN02886 aminoacyl-tRNA ligase
Probab=59.58 E-value=9.9 Score=43.63 Aligned_cols=61 Identities=23% Similarity=0.321 Sum_probs=33.2
Q ss_pred CCcceEeeeccccc-cHHHHHHHHHhHh-cC---------------CCCceEEEE--eceEEcCC-C-ccccccCC---C
Q 002136 538 YPTTMLETGHDILF-FWVARMVMMGIEF-TG---------------SVPFSHVYL--HGLIRDSQ-G-RKMSKTLG---N 593 (961)
Q Consensus 538 ~P~d~~~~G~Dil~-fw~~~~i~~~~~l-~~---------------~~Pfk~v~~--hg~v~d~~-G-~KMSKS~G---N 593 (961)
|-+|+...|.||.. .=++|-++..+.. .+ ..| ..++. +..+.... | .|||||.. |
T Consensus 183 ~~a~~VPVG~DQ~qH~eLtRdiA~rfN~~y~~~~~~~~~~~~~~~f~~P-~~l~~~~~~ri~~L~~g~~KMSKS~p~~~s 261 (389)
T PLN02886 183 YQADLVPVGEDQKQHLELTRDIAERVNNLYGGRKWKKLGGRGGSVFKVP-EALIPPAGARVMSLTDGTSKMSKSAPSDQS 261 (389)
T ss_pred cCCCeEEEccchHHHHHHHHHHHHHHhhhccccccccccccCCceecCC-eeccCcccceeeeCCCCCCcCCCCCCCCCC
Confidence 45777888999973 4445555433221 01 122 22221 23344443 3 69999995 5
Q ss_pred ccCchh
Q 002136 594 VIDPID 599 (961)
Q Consensus 594 vI~p~d 599 (961)
.|...|
T Consensus 262 ~I~L~D 267 (389)
T PLN02886 262 RINLLD 267 (389)
T ss_pred eEEecC
Confidence 777655
No 174
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=59.56 E-value=8.3 Score=44.34 Aligned_cols=41 Identities=22% Similarity=0.307 Sum_probs=28.1
Q ss_pred CEEEeCCCCCcCC-CCCCchhhHhHHHHHHHHHHHHcCCCeeecCCC
Q 002136 91 PFVISMPPPNVTG-SLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGT 136 (961)
Q Consensus 91 ~f~i~~ppPy~nG-~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~ 136 (961)
++.+.++ --||| .|||||+.. --.+.|+++ .|++|.++.|-
T Consensus 30 ~~~vy~G-~dPTg~~lHlGh~v~---l~~l~~lq~-~G~~~~iligd 71 (377)
T TIGR00234 30 KIKLYVG-FDPTAPSLHLGHLVP---LLKLRDFQQ-AGHEVIVLLGD 71 (377)
T ss_pred CCEEEEe-eCCCCCCccHHHHHH---HHHHHHHHH-CCCcEEEEEec
Confidence 4555555 45699 899999774 233556665 69999887753
No 175
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=59.50 E-value=11 Score=42.45 Aligned_cols=34 Identities=15% Similarity=0.185 Sum_probs=20.6
Q ss_pred CcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCC
Q 002136 100 NVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (961)
Q Consensus 100 y~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G 135 (961)
-|||.|||||.++.+.. ..+.+.-.|.++++...
T Consensus 11 qPTG~~HLGnylga~k~--~~~lq~~~~~~~~~~IA 44 (332)
T PRK12556 11 KPTGYPHLGNYIGAIKP--ALQMAKNYEGKALYFIA 44 (332)
T ss_pred CCCCcchHHHHHHHHHH--HHHHHHhcCCeEEEEEe
Confidence 34999999998774432 22333344665665543
No 176
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.34 E-value=36 Score=36.77 Aligned_cols=66 Identities=11% Similarity=0.141 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
-+.++..++++...++++|+.+.+++..-.=.-+--.+-+++.++++.+++.+|+.+++.|.+-..
T Consensus 36 ~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~ 101 (265)
T COG3883 36 QDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQE 101 (265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444333221111112234556666666666666666666655443
No 177
>PRK11020 hypothetical protein; Provisional
Probab=58.42 E-value=63 Score=30.00 Aligned_cols=51 Identities=20% Similarity=0.258 Sum_probs=34.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 889 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKN 948 (961)
Q Consensus 889 d~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~ 948 (961)
+..+|+.+|..++++++-.++.++. ....+++.+-....+.+..+|+++..
T Consensus 2 ~~K~Eiq~L~drLD~~~~Klaaa~~---------rgd~~~i~qf~~E~~~l~k~I~~lk~ 52 (118)
T PRK11020 2 VEKNEIKRLSDRLDAIRHKLAAASL---------RGDAEKYAQFEKEKATLEAEIARLKE 52 (118)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888877765 34455665555555666666655544
No 178
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=58.36 E-value=1.9e+02 Score=28.45 Aligned_cols=48 Identities=13% Similarity=0.160 Sum_probs=32.8
Q ss_pred CcEEEEecCCeEEEecCCCc----cChHHHHHHHHHHHHHHHHHHHHHHhHh
Q 002136 868 QSVHLVASEGLEAYLPLADM----VDISAEVQRLSKRLSKMQSEYDGLVARL 915 (961)
Q Consensus 868 ~~v~~~v~~~~~~~~~l~~~----id~~~e~~rl~k~~~kl~~~~~~~~~kl 915 (961)
..+...+.+.-++-+++..- .+.+.-++.|.|++++|.+.++++++.|
T Consensus 66 ~fv~~kv~~~~kviV~iGsg~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l 117 (145)
T COG1730 66 LFVKAKVKDMDKVIVSIGSGYYAEKSADEAIEFLKKRIEELEKAIEKLQQAL 117 (145)
T ss_pred ceEEEEeccCceEEEEcCCceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444434455554443 3788889999999999999999888743
No 179
>PRK00736 hypothetical protein; Provisional
Probab=58.31 E-value=72 Score=27.06 Aligned_cols=52 Identities=13% Similarity=0.224 Sum_probs=42.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 889 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLR 954 (961)
Q Consensus 889 d~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~ 954 (961)
+.+.-+..||-+++..+.-|+.++. +|.+-...+..++.++..+.++++.+.
T Consensus 2 ~~e~Ri~~LE~klafqe~tie~Ln~--------------~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 2 DAEERLTELEIRVAEQEKTIEELSD--------------QLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456688899999999999999987 777777788888888888888887765
No 180
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=58.31 E-value=30 Score=30.62 Aligned_cols=60 Identities=23% Similarity=0.379 Sum_probs=45.6
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002136 888 VDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTVM 958 (961)
Q Consensus 888 id~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~~ 958 (961)
-|+..+...|..++.++...+..+.+ +++. +++-.++++++++++...++-|+.|+++++
T Consensus 24 kd~~~~~~~lk~Klq~ar~~i~~lpg-------i~~s----~eeq~~~i~~Le~~i~~k~~~L~~~~~~~~ 83 (83)
T PF07544_consen 24 KDLDTATGSLKHKLQKARAAIRELPG-------IDRS----VEEQEEEIEELEEQIRKKREVLQKFKERVM 83 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC-------ccCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 37778888888888888887777655 4444 344567788899999999999999988764
No 181
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=58.15 E-value=52 Score=27.97 Aligned_cols=51 Identities=20% Similarity=0.313 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLR 954 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~ 954 (961)
.+.-+..|+-+++..+..|+.++. +|.+-..++..++.++..+.++|+++.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~--------------~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELND--------------VVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455678899999999999999887 788888888889999988888888776
No 182
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=57.84 E-value=38 Score=37.97 Aligned_cols=66 Identities=14% Similarity=0.095 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
.++|+++++..+...+.+|+...+++++.+-.--|-+++|.+-.++|..++.+...++...+.|+.
T Consensus 215 r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~ 280 (499)
T COG4372 215 RTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEA 280 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999999999999999988888765
No 183
>PF06696 Strep_SA_rep: Streptococcal surface antigen repeat; InterPro: IPR009578 This family consists of a number of ~25 residue long repeats found commonly in Streptococcal surface antigens although one copy is present in the HPSR2-heavy chain potential motor protein of Giardia lamblia (Giardia intestinalis) (Q24984 from SWISSPROT). This family is often found in conjunction with IPR001899 from INTERPRO.; PDB: 3IOX_A 3IPK_A 2WD6_B 1JMM_A.
Probab=57.17 E-value=23 Score=23.81 Aligned_cols=22 Identities=18% Similarity=0.083 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002136 932 VQEKAAEAEEKINLTKNRLAFL 953 (961)
Q Consensus 932 ~~~kl~~~~~~l~~~~~~l~~l 953 (961)
.+.||++|+++|+++++..++.
T Consensus 3 Yqakla~YqaeLa~vqk~na~~ 24 (25)
T PF06696_consen 3 YQAKLAQYQAELARVQKANADY 24 (25)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 4678899999999998877653
No 184
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=55.96 E-value=5.8 Score=43.96 Aligned_cols=43 Identities=23% Similarity=0.400 Sum_probs=28.6
Q ss_pred CCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCC
Q 002136 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTD 137 (961)
Q Consensus 90 ~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D 137 (961)
+++.+.++ --|||.|||||..... .+.++++ .|++|.+..|=+
T Consensus 4 ~~~~~y~G-~~PTg~lHlG~l~~~~---~~~~lq~-~g~~~~i~iaD~ 46 (292)
T PF00579_consen 4 KPFRVYTG-IDPTGDLHLGHLVPIM---KLIWLQK-AGFKVIILIADL 46 (292)
T ss_dssp SSEEEEEE-EESSSS-BHHHHHHHH---HHHHHHH-TTSEEEEEEEHH
T ss_pred CCcEEEEe-ECCCCcccchHHHHHH---HHHHHHh-cCCccceEecch
Confidence 45666665 5569999999877642 3445555 799998876643
No 185
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.76 E-value=52 Score=28.38 Aligned_cols=60 Identities=17% Similarity=0.200 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 893 EVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAF 952 (961)
Q Consensus 893 e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~ 952 (961)
-++||+.+.+.+..++..+=+-++.-+|-.||=..++...+.--++.+++-+-++-.++.
T Consensus 22 rIERlEeEk~~i~~dikdvy~eakg~GFDvKa~r~iirlrK~D~~er~EedAildlY~~a 81 (85)
T COG3750 22 RIERLEEEKKTIADDIKDVYAEAKGHGFDVKAVRTIIRLRKLDKAERQEEDAILDLYMDA 81 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999998876665555555554444444433
No 186
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=55.76 E-value=89 Score=27.08 Aligned_cols=58 Identities=12% Similarity=0.311 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTVM 958 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~~ 958 (961)
+.+.++.+..|...+++.++.++..+.+ +++-.+|+..+.+++..++.++.++.+++.
T Consensus 9 Ir~dIk~vd~KVdaLq~~V~~l~~~~~~-----------v~~l~~klDa~~~~l~~l~~~V~~I~~iL~ 66 (75)
T PF05531_consen 9 IRQDIKAVDDKVDALQTQVDDLESNLPD-----------VTELNKKLDAQSAQLTTLNTKVNEIQDILN 66 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCc-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4566788888899999999888886633 566678899999999999999999888764
No 187
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=55.57 E-value=33 Score=40.05 Aligned_cols=26 Identities=8% Similarity=0.031 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 930 RGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 930 ~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
+..++|+++++++++.|+++++.+++
T Consensus 100 ~dle~KIkeLEaE~~~Lk~Ql~a~~~ 125 (475)
T PRK13729 100 GDDQRRIEKLGQDNAALAEQVKALGA 125 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34467788888888888888765544
No 188
>PRK02793 phi X174 lysis protein; Provisional
Probab=55.46 E-value=77 Score=27.24 Aligned_cols=53 Identities=17% Similarity=0.251 Sum_probs=44.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 889 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 889 d~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
+.++-+.+||-+++..+.-|+.++. +|.+-+..+..++.++..+.++|..+..
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~Ln~--------------~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 57 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEELNV--------------TVTAHEMEMAKLRDHLRLLTEKLKASQP 57 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3567788999999999999999987 7778888888888999888888887764
No 189
>PRK00295 hypothetical protein; Provisional
Probab=55.33 E-value=90 Score=26.49 Aligned_cols=52 Identities=13% Similarity=0.097 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
.++-+.+||-+++..+.-|+.++. +|-+-...+..++.++..+.++++.+.+
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~--------------~v~~Qq~~I~~L~~ql~~L~~rl~~~~~ 54 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALND--------------VLVEQQRVIERLQLQMAALIKRQEEMVG 54 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455688999999999999999987 7777778888888888888888877653
No 190
>PRK10884 SH3 domain-containing protein; Provisional
Probab=54.19 E-value=1.4e+02 Score=31.38 Aligned_cols=49 Identities=14% Similarity=0.332 Sum_probs=26.8
Q ss_pred CcEEEEecCCeEEEecCC---CccChHHHHHHHHHHHHHHHHHHHHHHhHhc
Q 002136 868 QSVHLVASEGLEAYLPLA---DMVDISAEVQRLSKRLSKMQSEYDGLVARLS 916 (961)
Q Consensus 868 ~~v~~~v~~~~~~~~~l~---~~id~~~e~~rl~k~~~kl~~~~~~~~~kl~ 916 (961)
+...+...+|-+-+++-. ...-....+.++++++++++.+++.+.+..+
T Consensus 66 ~w~~Vr~~~G~~GWV~~~~Ls~~p~~~~rlp~le~el~~l~~~l~~~~~~~~ 117 (206)
T PRK10884 66 NYAQIRDSKGRTAWIPLKQLSTTPSLRTRVPDLENQVKTLTDKLNNIDNTWN 117 (206)
T ss_pred CEEEEEeCCCCEEeEEHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 345444344555554322 2233455567777777777777776665533
No 191
>PRK11637 AmiB activator; Provisional
Probab=53.96 E-value=32 Score=40.38 Aligned_cols=13 Identities=0% Similarity=0.330 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 002136 893 EVQRLSKRLSKMQ 905 (961)
Q Consensus 893 e~~rl~k~~~kl~ 905 (961)
+++.++++++.++
T Consensus 48 ~l~~l~~qi~~~~ 60 (428)
T PRK11637 48 QLKSIQQDIAAKE 60 (428)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 192
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=53.81 E-value=37 Score=38.39 Aligned_cols=57 Identities=19% Similarity=0.232 Sum_probs=44.6
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 888 VDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 888 id~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
++.+.||.|++.++.|+++-+++-.+ ...++++-+++|.+.+.+|+.+++..+.|.+
T Consensus 416 v~~edeirrlkrdm~klkq~l~RN~g-----------d~v~s~~lqe~L~ev~~~Lasl~aqea~ls~ 472 (486)
T KOG2185|consen 416 VEYEDEIRRLKRDMLKLKQMLNRNKG-----------DLVVSEALQERLKEVRKALASLLAQEAALSN 472 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc-----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 67788888888888888877776433 5567888888888888888888888877765
No 193
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=53.54 E-value=45 Score=40.48 Aligned_cols=66 Identities=17% Similarity=0.051 Sum_probs=46.9
Q ss_pred EEEEeceEEcCCCccccccCCCc-c---------Cch-----hhh-hhcChhHHHHHHHhCCC-CCccccCHHHHHH-HH
Q 002136 572 HVYLHGLIRDSQGRKMSKTLGNV-I---------DPI-----DTI-KEFGADALRFTISLGTA-GQDLSLSIERLTA-NK 633 (961)
Q Consensus 572 ~v~~hg~v~d~~G~KMSKS~GNv-I---------~p~-----dii-~~yGaDalR~~L~~~~~-~~D~~f~~~~~~~-~~ 633 (961)
.++-.+ .++.+|.||||+++.- | ||. -+. .-|.++++|=|+...+. ..+..|+++.+.. ++
T Consensus 275 ~~~h~~-rLn~~g~kLSKRkl~~lv~~g~v~GWdDprlpTi~glrRrG~~peai~~f~~~~Gvsk~~~~~d~~~L~~~nr 353 (601)
T PTZ00402 275 IVEDFS-RLNMEYSVMSKRKLTQLVDTHVVDGWDDPRFPTVRALVRRGLKMEALRQFVQEQGMSKTVNFMEWSKLWYFNT 353 (601)
T ss_pred eEEEEe-eEcCCCCcccccCChhhhhcCcccccCCCccHhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHH
Confidence 343345 5789999999999852 1 011 111 24889999999998877 8999999999987 55
Q ss_pred HHHHH
Q 002136 634 AFTNK 638 (961)
Q Consensus 634 ~~~nk 638 (961)
..++.
T Consensus 354 ~~l~~ 358 (601)
T PTZ00402 354 QILDP 358 (601)
T ss_pred HHHhh
Confidence 55554
No 194
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=53.43 E-value=23 Score=40.73 Aligned_cols=43 Identities=7% Similarity=0.053 Sum_probs=24.0
Q ss_pred CCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCC
Q 002136 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGT 136 (961)
Q Consensus 90 ~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~ 136 (961)
+++.+..+ -=|||.|||||.. +..--+..++ -.|++|.+..|-
T Consensus 65 ~~~~v~~G-~~PTG~lHLG~g~--i~~~~~~~lq-~~G~~v~~~IaD 107 (383)
T PTZ00126 65 ERPICYDG-FEPSGRMHIAQGI--LKAINVNKLT-KAGCVFVFWVAD 107 (383)
T ss_pred CCCEEEEE-ECCCCcccccchH--hHhHHHHHHH-hCCCeEEEEEcc
Confidence 34444444 4459999999932 1111223333 338888777653
No 195
>PRK04325 hypothetical protein; Provisional
Probab=53.00 E-value=87 Score=27.08 Aligned_cols=51 Identities=18% Similarity=0.199 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLR 954 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~ 954 (961)
.+.-+..||-+++..+.-|+.|+. +|.+-...+..++.++..+.++|+.+.
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~--------------vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNA--------------TVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556688999999999999999987 777777788888888888888887765
No 196
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.71 E-value=52 Score=35.61 Aligned_cols=62 Identities=11% Similarity=0.242 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLA 951 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~ 951 (961)
+.++...+++++..|..+++.+.++..+-.=...=-..-+++.+.+++++++.|..-++.|+
T Consensus 43 ~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~ 104 (265)
T COG3883 43 LQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLK 104 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444442222223344567777888888888877777663
No 197
>PRK11637 AmiB activator; Provisional
Probab=52.12 E-value=35 Score=40.08 Aligned_cols=26 Identities=23% Similarity=0.370 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHh
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVARL 915 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~kl 915 (961)
++++++.+++++..+++++..+++.+
T Consensus 52 l~~qi~~~~~~i~~~~~~~~~~~~~l 77 (428)
T PRK11637 52 IQQDIAAKEKSVRQQQQQRASLLAQL 77 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444433333
No 198
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=51.39 E-value=50 Score=32.60 Aligned_cols=65 Identities=17% Similarity=0.370 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLR 954 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~ 954 (961)
+..++.+|+..+.+|+.+++.++.+++.-....++=..-+.....++...++++.+++..+...+
T Consensus 64 l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~ 128 (151)
T PF11559_consen 64 LRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRK 128 (151)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555544444444445555666666666666666666555544
No 199
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=51.12 E-value=85 Score=27.24 Aligned_cols=65 Identities=12% Similarity=0.164 Sum_probs=39.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcC--chhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 889 DISAEVQRLSKRLSKMQSEYDGLVARLSS--SKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLR 954 (961)
Q Consensus 889 d~~~e~~rl~k~~~kl~~~~~~~~~kl~n--~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~ 954 (961)
+.+..+.+|.|+--.|.-.|--++.+|.+ |.+...+..+-|+ -+..+..++.++...++.|.+..
T Consensus 4 Eqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNie-LKve~~~L~~el~~~~~~l~~a~ 70 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIE-LKVEVESLKRELQEKKKLLKEAE 70 (75)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778999999999999999999999982 3333333333332 23334444444444444444433
No 200
>PF08287 DASH_Spc19: Spc19; InterPro: IPR013251 Spc19 is a component of the DASH complex. The DASH complex associates with the spindle pole body and is important for spindle and kinetochore integrity during cell division [, ].
Probab=50.97 E-value=58 Score=32.42 Aligned_cols=64 Identities=14% Similarity=0.155 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhc-cCCH----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVE-KAPE----------------DVVRGVQEKAAEAEEKINLTKNRLAF 952 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~-kap~----------------~vv~~~~~kl~~~~~~l~~~~~~l~~ 952 (961)
.++++.||+.+...|+...+-.+.+|+|..-.. .++. .+-.++..+|..++.+-++++-.++.
T Consensus 73 ~e~~l~kL~Rr~~tL~ak~EL~~~RL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lk~L~~kKerL~y~ver 152 (153)
T PF08287_consen 73 AEKHLEKLQRREETLKAKCELQQGRLSNYESTDSSSESGESEEERLSTDPVVMKSSDEEELERLKALRQKKERLKYSVER 152 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCccccccchhhhhhccchhhcccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667788888888888888888888888844433 3322 23355566777777777777777665
Q ss_pred H
Q 002136 953 L 953 (961)
Q Consensus 953 l 953 (961)
|
T Consensus 153 L 153 (153)
T PF08287_consen 153 L 153 (153)
T ss_pred C
Confidence 3
No 201
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=50.58 E-value=28 Score=37.77 Aligned_cols=58 Identities=16% Similarity=0.185 Sum_probs=40.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhh----------ccCCHHHHHHHHHHHHHHHHHHHHH
Q 002136 889 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFV----------EKAPEDVVRGVQEKAAEAEEKINLT 946 (961)
Q Consensus 889 d~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~----------~kap~~vv~~~~~kl~~~~~~l~~~ 946 (961)
++..+++.|+++++.-+.+++++.+...+..-- .-..++.+++|++...+|+.++..+
T Consensus 191 ~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~~~~~~~~~~~~~~de~I~rEeeEIreLE~k~~~L 258 (259)
T PF08657_consen 191 QLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDDEESEESSEDSVDTDEDIRREEEEIRELERKKREL 258 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHhc
Confidence 577788888888888888888887777666442 1244566667777777777666554
No 202
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=50.30 E-value=19 Score=40.69 Aligned_cols=55 Identities=22% Similarity=0.242 Sum_probs=37.3
Q ss_pred CCcceEeeeccccccHHHHHHHHHhHhcC------CCCceEEEEeceEEcCCCccccccCCCccCchh
Q 002136 538 YPTTMLETGHDILFFWVARMVMMGIEFTG------SVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPID 599 (961)
Q Consensus 538 ~P~d~~~~G~Dil~fw~~~~i~~~~~l~~------~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~d 599 (961)
|.+.+++.|.||.-. ++.|..+-. ..+| =++-.++++..|.|+-||-||+||.+-
T Consensus 226 ~g~~~QlGGsDQwGN-----itaG~dlI~ki~~~~~~vf--GlT~PLlTsstG~KlGKSaGnAvWLdp 286 (467)
T KOG2623|consen 226 YGCRFQLGGSDQWGN-----ITAGTDLIRKIMPIQAFVF--GLTFPLLTSSTGAKLGKSAGNAVWLDP 286 (467)
T ss_pred cCeeEEecccccccc-----cchHHHHHHHhccccccee--eeeeeeEecCcchhhccCCCceEEecC
Confidence 567899999999754 222222211 1222 245667888999999999999998754
No 203
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.05 E-value=43 Score=35.72 Aligned_cols=51 Identities=24% Similarity=0.442 Sum_probs=37.0
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 888 VDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKN 948 (961)
Q Consensus 888 id~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~ 948 (961)
.++.+|+.+++|+..+|+.|+..+++++++.. ..+.+..++++.+++++..
T Consensus 53 ~~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~----------~~~~t~~~~ie~~l~~l~~ 103 (247)
T COG3879 53 LDLVKELRSLQKKVNTLAAEVEDLENKLDSVR----------RSVLTDDAALEDRLEKLRM 103 (247)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhHHhHHHHHHHHHHHHHH
Confidence 37889999999999999999999999887644 3333445555555544444
No 204
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=49.78 E-value=16 Score=43.77 Aligned_cols=60 Identities=15% Similarity=0.059 Sum_probs=47.6
Q ss_pred EcCCCccccccCCCc---------------cCchhhhhh-cChhHHHHHHHhCCC-CCccccCHHHHHH-HHHHHHHH
Q 002136 580 RDSQGRKMSKTLGNV---------------IDPIDTIKE-FGADALRFTISLGTA-GQDLSLSIERLTA-NKAFTNKL 639 (961)
Q Consensus 580 ~d~~G~KMSKS~GNv---------------I~p~dii~~-yGaDalR~~L~~~~~-~~D~~f~~~~~~~-~~~~~nkl 639 (961)
++.+|.|||||++.. .+...+... |-++|+|=|++..+. ..|..++++.+.+ ++..++..
T Consensus 280 ln~~~~~LSKRkl~~lV~~g~V~GWDDPRl~Ti~glrrrG~~peAi~~f~~~~G~sk~~~~i~~~~Le~~nR~~ld~~ 357 (574)
T PTZ00437 280 LNVTGSLLSKRKINVLVRKGIVRGFDDPRLLTLAGMRRRGYTPAAINRFCELVGITRSMNVIQISMLENTLREDLDER 357 (574)
T ss_pred ecCCCceeeccchHHhcccCccCCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCCccceEeeHHHHHHHHHHHhccc
Confidence 578999999999874 233444444 899999999998888 8999999999987 56666654
No 205
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.47 E-value=64 Score=34.11 Aligned_cols=67 Identities=18% Similarity=0.200 Sum_probs=43.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 889 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 889 d~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
-++.||++|+|.|..--+.|-.-.++++|=.=-..-..++-..-+++.++++.+.+.+-++++.|++
T Consensus 229 ~lkeeia~Lkk~L~qkdq~ileKdkqisnLKad~e~~~~~ek~Hke~v~qL~~k~~~~lk~~a~l~~ 295 (305)
T KOG3990|consen 229 KLKEEIARLKKLLHQKDQLILEKDKQISNLKADKEYQKELEKKHKERVQQLQKKKEESLKAIAQLRN 295 (305)
T ss_pred HHHHHHHHHHHHHhhhHHHHHhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3566778888777776666666666776632110011334455667788888888888888888874
No 206
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=49.32 E-value=1.3e+02 Score=26.88 Aligned_cols=66 Identities=21% Similarity=0.208 Sum_probs=45.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhc-----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 889 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVE-----KAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 889 d~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~-----kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
.++.|+.+|++++.+=..--..+++-|..+...- .-|+. +.+.-+.++-+++++..++..+..|..
T Consensus 12 ~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~-~keLL~EIA~lE~eV~~LE~~v~~L~~ 82 (88)
T PF14389_consen 12 ALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKK-AKELLEEIALLEAEVAKLEQKVLSLYR 82 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888877777777777777754432 23333 344556678888888888888877764
No 207
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=49.07 E-value=19 Score=41.36 Aligned_cols=65 Identities=17% Similarity=0.179 Sum_probs=36.5
Q ss_pred CcCCCCCCchhhHhHHHHHHHHHHHH-cCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHH
Q 002136 100 NVTGSLHMGHAMFVTLEDIMVRYHRM-KGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYG 178 (961)
Q Consensus 100 y~nG~LHiGHa~~~~~~Di~~R~~rm-~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~ 178 (961)
-|||.+||||.++.+ + .|..+ .|+++.+. =.|-|-+- ....++.++ .++.
T Consensus 10 qPSG~~HLGnylG~i-k----~wv~lq~~~~~~~~-IADlHAlt----------~~~~d~~~i-------------r~~~ 60 (398)
T PRK12283 10 RPTGRLHLGHYHGVL-K----NWVKLQHEYECFFF-VADWHALT----------THYETPEVI-------------EKNV 60 (398)
T ss_pred CCCCcchHHHHHHHH-H----HHHHHhcCCcEEEE-eecHHHHh----------CCCCCHHHH-------------HHHH
Confidence 359999999999843 2 44443 57776544 33443221 001122221 2334
Q ss_pred HHHHHHHHHhCCccC
Q 002136 179 GTITSQIKRLGASCD 193 (961)
Q Consensus 179 ~~i~~~l~~lG~s~D 193 (961)
..+...+..+|+..+
T Consensus 61 ~~~~a~~lA~GlDP~ 75 (398)
T PRK12283 61 WDMVIDWLAAGVDPA 75 (398)
T ss_pred HHHHHHHHHcCCCcc
Confidence 456778889998766
No 208
>PRK02119 hypothetical protein; Provisional
Probab=48.36 E-value=1.1e+02 Score=26.34 Aligned_cols=53 Identities=9% Similarity=0.155 Sum_probs=43.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 889 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 889 d~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
+.++-+..||-+++..+.-|+.++. +|.+-...+..++.++..+.++|+.+..
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~--------------~v~~Qq~~id~L~~ql~~L~~rl~~~~~ 58 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQ--------------ALIEQQFVIDKMQVQLRYMANKLKDMQP 58 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4666788888899998888888877 7777778888888888888888877653
No 209
>PLN02859 glutamine-tRNA ligase
Probab=47.79 E-value=36 Score=42.49 Aligned_cols=53 Identities=15% Similarity=0.013 Sum_probs=41.0
Q ss_pred EEcCCCccccccCCCcc---------------Cchhhhhh-cChhHHHHHHHhCCC-CCcc-ccCHHHHHH
Q 002136 579 IRDSQGRKMSKTLGNVI---------------DPIDTIKE-FGADALRFTISLGTA-GQDL-SLSIERLTA 631 (961)
Q Consensus 579 v~d~~G~KMSKS~GNvI---------------~p~dii~~-yGaDalR~~L~~~~~-~~D~-~f~~~~~~~ 631 (961)
.++.+|.||||+++... +...+.+. |-++|+|=|++..+. ..|. .++++.++.
T Consensus 492 rLn~~~t~LSKRkl~~lV~~g~V~GWDDPRl~Tl~glRrrG~~PeAi~nFi~~lG~s~~~~e~i~~~~Le~ 562 (788)
T PLN02859 492 RLNVTNTVMSKRKLNRLVTEKYVDGWDDPRLLTLAGLRRRGVTPTAINAFCRGIGITRSDNSLIRMDRLEH 562 (788)
T ss_pred eECCCCCcccCcCchhccccCcccCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCCCCceecHHHHHh
Confidence 67899999999998652 33445543 889999999998777 6666 799888854
No 210
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=47.67 E-value=50 Score=38.80 Aligned_cols=59 Identities=17% Similarity=0.281 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
+.-|+..|+.+..+|+.+|++++.|... =+..+.+++..|.+++.+++..|.+++++.+
T Consensus 91 Vs~EL~ele~krqel~seI~~~n~kiEe-------lk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~ 149 (907)
T KOG2264|consen 91 VSLELTELEVKRQELNSEIEEINTKIEE-------LKRLIPQKQLELSALKGEIEQAQRQLEELRE 149 (907)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH-------HHHHHHHhHHHHHHHHhHHHHHHHHHHHHHh
Confidence 4456777778888888888887776532 2335677778888888889888888888876
No 211
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=47.60 E-value=30 Score=40.85 Aligned_cols=43 Identities=21% Similarity=0.199 Sum_probs=31.6
Q ss_pred EEEEeceEEcCCCccccccCCCccCchhhh-hhcChhHHHHHHHh
Q 002136 572 HVYLHGLIRDSQGRKMSKTLGNVIDPIDTI-KEFGADALRFTISL 615 (961)
Q Consensus 572 ~v~~hg~v~d~~G~KMSKS~GNvI~p~dii-~~yGaDalR~~L~~ 615 (961)
...=++++++.+|+|||||+| .++..+.. ..|-..+++-+++.
T Consensus 236 ~~~H~~li~~~~g~kLSKr~~-~~~~~~~~~~G~~~~al~~~~al 279 (472)
T COG0008 236 VYAHLPLLLNEDGKKLSKRKG-AVSIGEYRVEGWLPPALPNLLAL 279 (472)
T ss_pred cEEEeeeeecCCCCeecCccC-ccccchhhhcCCCcHHHHHHHHH
Confidence 677789999888999999999 55555433 34666677777754
No 212
>PRK04406 hypothetical protein; Provisional
Probab=47.53 E-value=1.1e+02 Score=26.49 Aligned_cols=52 Identities=10% Similarity=0.169 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
.+.-+..||-+++..+.-|+.|+. +|-+-...+..++.++..+.++++.+..
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~--------------~v~~Qq~~I~~L~~ql~~L~~rl~~~~~ 60 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELND--------------ALSQQQLLITKMQDQMKYVVGKVKNMDS 60 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 566678888888888888888877 7777777888888888888888877653
No 213
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=47.46 E-value=2.2e+02 Score=26.63 Aligned_cols=40 Identities=13% Similarity=0.284 Sum_probs=26.5
Q ss_pred ecCCeEEEecCCCc----cChHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 874 ASEGLEAYLPLADM----VDISAEVQRLSKRLSKMQSEYDGLVA 913 (961)
Q Consensus 874 v~~~~~~~~~l~~~----id~~~e~~rl~k~~~kl~~~~~~~~~ 913 (961)
+.+.-++++.+... .+++.-++.+.+++..+++.++++++
T Consensus 55 i~~~~~vlV~lG~~~~vE~s~~eA~~~l~~r~~~l~~~~~~l~~ 98 (120)
T PF02996_consen 55 IPDTDKVLVSLGAGYYVEMSLEEAIEFLKKRIKELEEQLEKLEK 98 (120)
T ss_dssp -SSTTEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCCCEEEEEeeCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444332 36777888899999999888888766
No 214
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=46.97 E-value=2.8e+02 Score=26.88 Aligned_cols=66 Identities=12% Similarity=0.219 Sum_probs=43.3
Q ss_pred cEEEEecCCeEEEecCCCc----cChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHH
Q 002136 869 SVHLVASEGLEAYLPLADM----VDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKIN 944 (961)
Q Consensus 869 ~v~~~v~~~~~~~~~l~~~----id~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~ 944 (961)
++...+.+.-.|.+++.+- .+++.-+.-|+++++.+++.++.+++ .+...+++++++..++.
T Consensus 67 yv~~~v~~~~kV~v~lG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~--------------~l~~~~~~~~~~~~~l~ 132 (140)
T PRK03947 67 FVKAKVKDKDKVIVSLGAGYSAEKDLDEAIEILDKRKEELEKALEKLEE--------------ALQKLASRIAQLAQELQ 132 (140)
T ss_pred EEEEEecCCCeEEEEcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
Confidence 3444444555666665554 37888889999999999999998877 33444555555555555
Q ss_pred HHHH
Q 002136 945 LTKN 948 (961)
Q Consensus 945 ~~~~ 948 (961)
.+..
T Consensus 133 ~l~~ 136 (140)
T PRK03947 133 QLQQ 136 (140)
T ss_pred HHHH
Confidence 5544
No 215
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=46.37 E-value=38 Score=39.64 Aligned_cols=66 Identities=14% Similarity=0.312 Sum_probs=37.3
Q ss_pred CccChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 886 DMVDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLR 954 (961)
Q Consensus 886 ~~id~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~ 954 (961)
.++.++++..++..+++.|+.+.+.+.+.+... .++.++..++.+++..++.++++.+++.+..++
T Consensus 31 ~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~---~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 96 (418)
T TIGR00414 31 KLIALDDERKKLLSEIEELQAKRNELSKQIGKA---KGQKKDKIEEIKKELKELKEELTELSAALKALE 96 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888888888888888777541 122211133333444444444444444444433
No 216
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=46.18 E-value=1e+02 Score=28.59 Aligned_cols=60 Identities=20% Similarity=0.273 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcC-chhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVARLSS-SKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~kl~n-~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
...+++.++.++......++.++.++.+ |+- +-+..-+-.+++.+.+++.+.+++..+..
T Consensus 33 ~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~------~dv~~L~l~l~el~G~~~~l~~~l~~v~~ 93 (106)
T PF10805_consen 33 KREDIEKLEERLDEHDRRLQALETKLEHLPTR------DDVHDLQLELAELRGELKELSARLQGVSH 93 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH------HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4567788888888888889999888877 443 35666777777777777777777766655
No 217
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=45.56 E-value=1.4e+02 Score=25.49 Aligned_cols=50 Identities=16% Similarity=0.310 Sum_probs=29.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 889 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAF 952 (961)
Q Consensus 889 d~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~ 952 (961)
|+.+.+.+++.+++++++.++.++.. .+....+..++..++++++..+.=
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~--------------~~~~e~~i~~~~~~l~~I~~n~kW 52 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKR--------------DAANEKDIKNLNKQLEKIKSNTKW 52 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777663 223333345555555555554443
No 218
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=45.39 E-value=1.4e+02 Score=25.43 Aligned_cols=65 Identities=20% Similarity=0.314 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRST 956 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~ 956 (961)
++..++.|++++.+-.+-.+++++.+. -|-++-..........+|.+...++..|...|+.+.++
T Consensus 7 ~~~~l~~L~~~l~~E~~~r~Gaenm~~--~~~~~~~~~~~~~~~~~l~es~~ki~~Lr~~L~k~~~~ 71 (72)
T cd00089 7 LQSRLERLEKELSIELKVKEGAENLLR--LYSDEKKKKLLAEAEQMLRESKQKLELLKMQLEKLKQE 71 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455677788888887777777777663 22222111455666778888888888888888877653
No 219
>PRK00846 hypothetical protein; Provisional
Probab=45.24 E-value=1.5e+02 Score=25.96 Aligned_cols=53 Identities=23% Similarity=0.225 Sum_probs=43.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 889 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 889 d~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
+.+.-+..|+-+++..+.-|+.++. +|.+-...+..++.++..+.++|+++..
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN~--------------~v~~qq~~I~~L~~ql~~L~~rL~~~~~ 62 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELSE--------------ALADARLTGARNAELIRHLLEDLGKVRS 62 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4667788899999999999998887 6777777888888888888888887764
No 220
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=44.85 E-value=40 Score=28.31 Aligned_cols=60 Identities=13% Similarity=0.182 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002136 897 LSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRST 956 (961)
Q Consensus 897 l~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~ 956 (961)
+++++++|+++++++++.+..-.=.-..|.=+=..=.+-.+.-+++++.++..++.|.+.
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~ 61 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEA 61 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888886665444334444444444445566667777777777776653
No 221
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=44.63 E-value=57 Score=38.60 Aligned_cols=67 Identities=22% Similarity=0.377 Sum_probs=36.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCc---hhhccCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 889 DISAEVQRLSKRLSKMQSEYDGLVARLSSS---KFVEKAPED---VVRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 889 d~~~e~~rl~k~~~kl~~~~~~~~~kl~n~---~f~~kap~~---vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
++.+++.+|.+++..++.+++++++.|..- ....+.|++ ..+..++.+.++.++++.+++.+..|++
T Consensus 331 ~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~ 403 (451)
T PF03961_consen 331 ELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKE 403 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777777777666664321 112222332 3344444455555555555555555554
No 222
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=44.46 E-value=96 Score=34.96 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHhH
Q 002136 895 QRLSKRLSKMQSEYDGLVAR 914 (961)
Q Consensus 895 ~rl~k~~~kl~~~~~~~~~k 914 (961)
.++..+.+.|+.++..+++.
T Consensus 180 ~~l~~~~~~L~~e~~~Lk~~ 199 (325)
T PF08317_consen 180 PKLRERKAELEEELENLKQL 199 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 223
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=44.37 E-value=68 Score=37.51 Aligned_cols=66 Identities=11% Similarity=0.183 Sum_probs=40.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCchh-hccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 889 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKF-VEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLR 954 (961)
Q Consensus 889 d~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f-~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~ 954 (961)
.++++++.+.++-+.|.+|-++|+++.+|-+. ++.|=.....+..++.++++.++.+++..|.+|.
T Consensus 70 ~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~ 136 (472)
T TIGR03752 70 ELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQ 136 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888888899999999888877443 2223223333333344455555555555555543
No 224
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=44.29 E-value=1.5e+02 Score=25.14 Aligned_cols=60 Identities=22% Similarity=0.323 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhc--CchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002136 894 VQRLSKRLSKMQSEYDGLVARLS--SSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTVM 958 (961)
Q Consensus 894 ~~rl~k~~~kl~~~~~~~~~kl~--n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~~ 958 (961)
++.|.++|++=.+-+++.++.+. +.+- +.+......++.+...+|..|+..|+.+.....
T Consensus 3 i~~L~~~i~~E~ki~~Gae~m~~~~~t~~-----~~~~~~~~~~l~~s~~kI~~L~~~L~~l~~~~~ 64 (70)
T PF02185_consen 3 IEELQKKIDKELKIKEGAENMLQAYSTDK-----KKVLSEAESQLRESNQKIELLREQLEKLQQRSQ 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCHH-----CH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 55667777766666666666655 2221 127888899999999999999999999887543
No 225
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=44.27 E-value=61 Score=37.56 Aligned_cols=69 Identities=13% Similarity=0.171 Sum_probs=52.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002136 889 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTV 957 (961)
Q Consensus 889 d~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~ 957 (961)
|.++.-+|+..++.+++.++.+.+.|++.=.-.-|---..+..+-+.-.+++.++++++.++..++.|+
T Consensus 39 d~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~i~d~l 107 (604)
T KOG3564|consen 39 DFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQLIKDML 107 (604)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 666667777778888888888888888775444445556777777777888899999999998888864
No 226
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=43.99 E-value=35 Score=40.01 Aligned_cols=32 Identities=19% Similarity=0.463 Sum_probs=23.9
Q ss_pred CccChHHHHHHHHHHHHHHHHHHHHHHhHhcC
Q 002136 886 DMVDISAEVQRLSKRLSKMQSEYDGLVARLSS 917 (961)
Q Consensus 886 ~~id~~~e~~rl~k~~~kl~~~~~~~~~kl~n 917 (961)
.++.+.++..++..+++.|+++.+.+.+.+..
T Consensus 29 ~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~ 60 (425)
T PRK05431 29 ELLELDEERRELQTELEELQAERNALSKEIGQ 60 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777788888888888888877777754
No 227
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=43.69 E-value=80 Score=30.30 Aligned_cols=63 Identities=17% Similarity=0.267 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002136 895 QRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTV 957 (961)
Q Consensus 895 ~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~ 957 (961)
+.|+.-..+|.+.|+++..||..-.=+.+.=.+-|.+.+..+++...++..++.....|...|
T Consensus 57 ~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki 119 (126)
T PF07889_consen 57 ESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKI 119 (126)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566667777777777766666666666667777777777777777777777766544
No 228
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=43.59 E-value=65 Score=34.81 Aligned_cols=65 Identities=14% Similarity=0.194 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 891 SAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 891 ~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
.+.+.++..+...+..++..+++.+.+-..-.+-=+..++..++++++++.+++.+++....+..
T Consensus 41 Q~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p 105 (251)
T PF11932_consen 41 QKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVP 105 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555544334444456667777777777777777766555544
No 229
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=43.29 E-value=31 Score=39.01 Aligned_cols=16 Identities=38% Similarity=0.478 Sum_probs=12.8
Q ss_pred CcCCCCCCchhhHhHH
Q 002136 100 NVTGSLHMGHAMFVTL 115 (961)
Q Consensus 100 y~nG~LHiGHa~~~~~ 115 (961)
-|||.+||||.++.+.
T Consensus 10 ~PTG~~HLGn~l~~~~ 25 (333)
T PRK12282 10 RPTGKLHLGHYVGSLK 25 (333)
T ss_pred CCCCcchHHHHHHHHH
Confidence 3599999999888543
No 230
>smart00836 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505.
Probab=43.20 E-value=2.1e+02 Score=26.65 Aligned_cols=78 Identities=18% Similarity=0.204 Sum_probs=50.8
Q ss_pred chhHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhhHHHHHHhhhhhccCCChH---HHHHHHHHHHHHHHHHH
Q 002136 678 LPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDS---DAIIAQAVLLYIFENIL 754 (961)
Q Consensus 678 ~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~i~~f~~~~~~n~Yle~~K~~l~~~~~~~---~~~~~~~~l~~vl~~~l 754 (961)
..++-++..+..+.+.+..++.+.+++.++..++++. ..+.++| +. -++.++++.+ .|......+..++..++
T Consensus 36 ~~E~~L~~~i~~~~~~i~~~~~~~~~~~l~~~l~~L~-~~~~~fy-~~--v~V~~~~~~~~~~~RL~Ll~~~~~~l~~~~ 111 (122)
T smart00836 36 PEELALLRLLARFPEVLEAAAETLEPHRLANYLYDLA-SAFHSFY-NK--CRVLGEENPELRAARLALLKAVRQVLANGL 111 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHH-HHHHHHH-cc--CcccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777788888888899999999999999999986 4555555 32 2333332222 23344444555666666
Q ss_pred HHhCC
Q 002136 755 KLLHP 759 (961)
Q Consensus 755 ~LL~P 759 (961)
.+|..
T Consensus 112 ~llgi 116 (122)
T smart00836 112 RLLGI 116 (122)
T ss_pred HHcCC
Confidence 66653
No 231
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=42.66 E-value=54 Score=30.56 Aligned_cols=25 Identities=16% Similarity=0.244 Sum_probs=18.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 889 DISAEVQRLSKRLSKMQSEYDGLVA 913 (961)
Q Consensus 889 d~~~e~~rl~k~~~kl~~~~~~~~~ 913 (961)
|++.-+..|+++++.++..++++++
T Consensus 64 ~~~e~~~~l~~r~e~ie~~i~~lek 88 (110)
T TIGR02338 64 DKEEAIQELKEKKETLELRVKTLQR 88 (110)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777778888888888766666655
No 232
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=41.77 E-value=1.2e+02 Score=33.75 Aligned_cols=63 Identities=16% Similarity=0.331 Sum_probs=38.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 889 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVV------RGVQEKAAEAEEKINLTKNRLAFL 953 (961)
Q Consensus 889 d~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv------~~~~~kl~~~~~~l~~~~~~l~~l 953 (961)
...++++.++++++.++.++++++..+.+++.... ..++ +...++++++..+|...+.+++..
T Consensus 85 ~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~--~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~q~ 153 (301)
T PF06120_consen 85 AQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITEN--GYIINHLMSQADATRKLAEATRELAVAQERLEQM 153 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888899899888888888888765331 2222 234445555554444444444333
No 233
>PRK10884 SH3 domain-containing protein; Provisional
Probab=41.55 E-value=99 Score=32.40 Aligned_cols=63 Identities=13% Similarity=0.379 Sum_probs=33.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 889 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLR 954 (961)
Q Consensus 889 d~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~ 954 (961)
.+++|++.++.+++.+..+.+.....|.+.-= .-+..+.+-+++.++++++++.+++.+..++
T Consensus 97 ~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~---~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~ 159 (206)
T PRK10884 97 DLENQVKTLTDKLNNIDNTWNQRTAEMQQKVA---QSDSVINGLKEENQKLKNQLIVAQKKVDAAN 159 (206)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888888777665554444433100 0222233344455555555555555544443
No 234
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=41.53 E-value=70 Score=38.32 Aligned_cols=68 Identities=16% Similarity=0.349 Sum_probs=46.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhcc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002136 889 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEK---APEDVVRGVQEKAAEAEEKINLTKNRLAFLRST 956 (961)
Q Consensus 889 d~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~k---ap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~ 956 (961)
+++.++.++++++.+|+.+++++..++..+.-.++ +-+.-++.-+.+|.+-..+.+.|+..|+.++.|
T Consensus 440 ~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~ 510 (652)
T COG2433 440 ELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKM 510 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777777777777776664333222 334555666777888888888888888888764
No 235
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=41.30 E-value=1.3e+02 Score=30.73 Aligned_cols=65 Identities=17% Similarity=0.188 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRST 956 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~ 956 (961)
.+.-++-|+.+++.+..+++.++..|+..+. +.-.--.-+-|..+++..++|.+|+..++.+...
T Consensus 83 ~~~R~~lLe~~~~~l~~ri~eLe~~l~~kad--~vvsYqll~hr~e~ee~~~~l~~le~~~~~~e~~ 147 (175)
T PRK13182 83 SSVDFEQLEAQLNTITRRLDELERQLQQKAD--DVVSYQLLQHRREMEEMLERLQKLEARLKKLEPI 147 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555666666666666666666554333 1222223577888999999999999999987764
No 236
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=40.48 E-value=1.5e+02 Score=29.49 Aligned_cols=55 Identities=15% Similarity=0.224 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTVM 958 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~~ 958 (961)
+..|..+|+.++++|+++++.|+++ .+...+++..+++..+.+-..++.-+.|+.
T Consensus 102 ~~~e~~~l~~e~~~l~~~~e~Le~e--------------~~~L~~~~~~~~eDY~~L~~Im~RARkl~~ 156 (161)
T TIGR02894 102 LQKENERLKNQNESLQKRNEELEKE--------------LEKLRQRLSTIEEDYQTLIDIMDRARKLAV 156 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566677777777777777777664 445556667777777777777776666553
No 237
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=40.38 E-value=1.3e+02 Score=31.06 Aligned_cols=61 Identities=21% Similarity=0.300 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 892 AEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 892 ~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
.++.++-.++..|+++++.+++.|. .|. +..++.+++.++....+.+.+.+...++-.|.+
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~--~~~-~~Dp~~i~~~~~~~~~~~~~anrwTDNI~~l~~ 163 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELE--KYS-ENDPEKIEKLKEEIKIAKEAANRWTDNIFSLKS 163 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHH-hcCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 5777777888888888888888887 554 456678888888999999999998888887776
No 238
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=39.33 E-value=1.7e+02 Score=26.10 Aligned_cols=65 Identities=18% Similarity=0.250 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAP--EDVVRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap--~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
+++.+..+...=..|...++++..+|.+-.-+...+ -+... ...||...+.++..+.+.+..++.
T Consensus 19 ~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~~l~~lk~ 85 (92)
T PF14712_consen 19 LDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDP-YVKKLVNIKKRMSNLHERLQKLKK 85 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666677777777777776655544433 23444 888888888888888888887765
No 239
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=39.23 E-value=28 Score=37.62 Aligned_cols=40 Identities=20% Similarity=0.376 Sum_probs=27.4
Q ss_pred HHhCCCCCCCCC--------CCCCCEEEeCCCCCcCCCCCCchhhHhH
Q 002136 75 WESQGYFKPNFE--------RGSDPFVISMPPPNVTGSLHMGHAMFVT 114 (961)
Q Consensus 75 W~~~~~f~~~~~--------~~~~~f~i~~ppPy~nG~LHiGHa~~~~ 114 (961)
...+|+|-...+ ..+++|++.++-=--+|.+|+||+.-++
T Consensus 61 flRrg~fFshRDf~~iLd~~eq~kpFyLYTGRGpSS~smHlGHliPFi 108 (397)
T KOG2145|consen 61 FLRRGIFFSHRDFNLILDAYEQGKPFYLYTGRGPSSESMHLGHLIPFI 108 (397)
T ss_pred HhhhcceeecccHHHHHHHHHcCCceEEEeCCCCCccccccccchhHH
Confidence 345566654332 2478899999865567889999986543
No 240
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=39.15 E-value=93 Score=32.48 Aligned_cols=30 Identities=37% Similarity=0.489 Sum_probs=24.7
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhHhcC
Q 002136 888 VDISAEVQRLSKRLSKMQSEYDGLVARLSS 917 (961)
Q Consensus 888 id~~~e~~rl~k~~~kl~~~~~~~~~kl~n 917 (961)
-++..|..+|..-+.+++.+++.+++.|.+
T Consensus 51 ~ei~~eN~~L~epL~~a~~e~~eL~k~L~~ 80 (201)
T PF13851_consen 51 AEISQENKRLSEPLKKAEEEVEELRKQLKN 80 (201)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 367788888888888888888888888875
No 241
>PLN02320 seryl-tRNA synthetase
Probab=39.08 E-value=50 Score=39.32 Aligned_cols=64 Identities=13% Similarity=0.269 Sum_probs=38.8
Q ss_pred CccChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 886 DMVDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLR 954 (961)
Q Consensus 886 ~~id~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~ 954 (961)
.++.+.++..++..+++.++.+.+.+.+++.. .+.++ -.++.+++..++++++..+++.+..+.
T Consensus 94 ~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~----~~~~~-~~~~l~~~~k~lk~~i~~le~~~~~~~ 157 (502)
T PLN02320 94 LVLELYENMLALQKEVERLRAERNAVANKMKG----KLEPS-ERQALVEEGKNLKEGLVTLEEDLVKLT 157 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888899999888888888865 12221 223344444445555555554444443
No 242
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.74 E-value=1e+02 Score=35.47 Aligned_cols=65 Identities=12% Similarity=0.186 Sum_probs=44.9
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 888 VDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLR 954 (961)
Q Consensus 888 id~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~ 954 (961)
.|+.+-.++|.+|++.|++++++...++. .++..-+..+......+..-+++-+++.-..+.++.
T Consensus 236 ~~L~~~~~~L~kqie~L~qeie~~~~~~r--~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~ 300 (439)
T KOG2911|consen 236 ADLIQARAKLAKQIEFLEQEIEKSKEKLR--QALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLE 300 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 47888899999999999999999999998 555666766655544444444444444444443333
No 243
>COG2348 Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]
Probab=38.60 E-value=82 Score=36.58 Aligned_cols=63 Identities=25% Similarity=0.439 Sum_probs=53.0
Q ss_pred EEecCCCccChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 880 AYLPLADMVDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLA 951 (961)
Q Consensus 880 ~~~~l~~~id~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~ 951 (961)
.+++|+- +|+.+.+.+|+.+++++..++.+.+..|. +.|. .++.+.++.+++.|++..++.++
T Consensus 235 a~~~la~-l~~~e~~~~l~~~l~~~~~~~~r~~~~l~------~~~~--~~k~~~~l~~l~~q~~~~~~~~~ 297 (418)
T COG2348 235 AELPLAY-LDLDEYLKKLNQELAKLAAEIERVQEALK------ESPK--SEKAQNKLNRLQMQLEAFEERIA 297 (418)
T ss_pred hhhhhhh-cCHHHHHHHHHHHHHHHHhHHHHHHHHhc------cCcc--hhhhhhhHHHHHHHHHhhHHHHh
Confidence 4455554 79999999999999999999999999875 3444 67888999999999999998887
No 244
>PLN02678 seryl-tRNA synthetase
Probab=38.39 E-value=46 Score=39.18 Aligned_cols=32 Identities=13% Similarity=0.342 Sum_probs=23.5
Q ss_pred CccChHHHHHHHHHHHHHHHHHHHHHHhHhcC
Q 002136 886 DMVDISAEVQRLSKRLSKMQSEYDGLVARLSS 917 (961)
Q Consensus 886 ~~id~~~e~~rl~k~~~kl~~~~~~~~~kl~n 917 (961)
.++.++++..++..+++.++.+.+.+.+.+..
T Consensus 34 ~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~ 65 (448)
T PLN02678 34 EVIALDKEWRQRQFELDSLRKEFNKLNKEVAK 65 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777778888888888888777777653
No 245
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=38.30 E-value=86 Score=34.48 Aligned_cols=62 Identities=15% Similarity=0.177 Sum_probs=40.3
Q ss_pred CCccChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002136 885 ADMVDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTVM 958 (961)
Q Consensus 885 ~~~id~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~~ 958 (961)
...+++..|-.+|.|+..+|..+++++++-.--.+- . ++.+-.+++.+++-+.+..+++.++
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l~s~V--------~----E~vet~dv~~d~i~Kimnk~Re~vl 93 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIEVERLENEMLRSHV--------C----EDVETNDVIYDKIVKIMNKMRELVL 93 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhh--------h----hHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 344688999999999999999999999764332222 1 2222234466666666666655544
No 246
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=37.77 E-value=53 Score=36.48 Aligned_cols=42 Identities=17% Similarity=0.052 Sum_probs=28.3
Q ss_pred EEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHhCC
Q 002136 572 HVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGT 617 (961)
Q Consensus 572 ~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~~ 617 (961)
.+.-++++++.+|+||||+.|.. ...+ +.+-+. +..+++...
T Consensus 222 ~y~H~pll~~~~g~kLSKr~~~~-~i~~--~g~~p~-l~~~l~~lG 263 (299)
T PRK05710 222 RYLHLPLVLNADGQKLSKQNGAP-ALDA--AGPLPV-LAAALRFLG 263 (299)
T ss_pred eEEEeecccCCCCCcccccCCcc-chhh--cCcCHH-HHHHHHHcC
Confidence 55566899999999999997755 2223 445556 555555443
No 247
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=37.73 E-value=26 Score=40.44 Aligned_cols=37 Identities=30% Similarity=0.497 Sum_probs=25.4
Q ss_pred EEEeCCCCCcCC-CCCCchhhHhHHHHHHHHHHHHcCCCeeecCCC
Q 002136 92 FVISMPPPNVTG-SLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGT 136 (961)
Q Consensus 92 f~i~~ppPy~nG-~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~ 136 (961)
|+-.+| || +|||||..... .+.||+ ..|++|..+.|-
T Consensus 36 Y~GfDP----Ta~slHlGhlv~l~---kL~~fQ-~aGh~~ivLigd 73 (401)
T COG0162 36 YIGFDP----TAPSLHLGHLVPLM---KLRRFQ-DAGHKPIVLIGD 73 (401)
T ss_pred EEeeCC----CCCccchhhHHHHH---HHHHHH-HCCCeEEEEecc
Confidence 444554 99 89999987632 234444 459999998773
No 248
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=37.64 E-value=66 Score=30.44 Aligned_cols=29 Identities=38% Similarity=0.554 Sum_probs=25.6
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhHhc
Q 002136 888 VDISAEVQRLSKRLSKMQSEYDGLVARLS 916 (961)
Q Consensus 888 id~~~e~~rl~k~~~kl~~~~~~~~~kl~ 916 (961)
-|++.|++|+.+-+++..++++.+..++.
T Consensus 31 ~~~~~E~~rl~~Al~~~~~eL~~l~~~~~ 59 (123)
T PF05524_consen 31 DDIEAEIERLEQALEKAREELEQLAERAE 59 (123)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999988743
No 249
>PF00846 Hanta_nucleocap: Hantavirus nucleocapsid protein; InterPro: IPR002214 Hantaviruses are ssRNA negative-strand viruses. The nucleocapsid protein is an internal protein of the virus particle [, ].; GO: 0019013 viral nucleocapsid; PDB: 2IC9_A 2IC6_A 2K48_A 4FI5_A.
Probab=37.42 E-value=97 Score=35.05 Aligned_cols=61 Identities=23% Similarity=0.265 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhcC-chhhccCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 893 EVQRLSKRLSKMQSEYDGLVARLSS-SKFVEKAPEDVV----RGVQEKAAEAEEKINLTKNRLAFL 953 (961)
Q Consensus 893 e~~rl~k~~~kl~~~~~~~~~kl~n-~~f~~kap~~vv----~~~~~kl~~~~~~l~~~~~~l~~l 953 (961)
.+++|++++...++++.-..+||.+ +.=.++-|.+|- ...+.-.+.++.++..++..|+++
T Consensus 3 ~~~elq~e~~~~E~qL~~a~qkl~da~~~~e~dpD~~nk~~~~~R~~~v~~~~~Ki~elkr~lAd~ 68 (428)
T PF00846_consen 3 TLEELQEEITQHEQQLVIARQKLKDAEKQYEKDPDDVNKSTLQQRQSVVSALQDKIAELKRQLADR 68 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777765 333466676654 333444455555555555555543
No 250
>cd00939 MetRS_RNA MetRS_RNA binding domain. This short RNA-binding domain is found at the C-terminus of MetRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is repeated in Drosophila MetRS. This domain consists of a helix-turn-helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=37.31 E-value=1.3e+02 Score=23.45 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=23.3
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHH
Q 002136 922 EKAPEDVVRGVQEKAAEAEEKINLTK 947 (961)
Q Consensus 922 ~kap~~vv~~~~~kl~~~~~~l~~~~ 947 (961)
++|++++++.+=++|-+++++++.+.
T Consensus 18 ~ka~k~~i~~eV~~LL~LK~~~k~~t 43 (45)
T cd00939 18 SKADKSVWQPEVNKLLDLKKQLALAE 43 (45)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 68999999999999999999998763
No 251
>PRK09343 prefoldin subunit beta; Provisional
Probab=36.67 E-value=80 Score=30.08 Aligned_cols=25 Identities=16% Similarity=0.122 Sum_probs=21.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 889 DISAEVQRLSKRLSKMQSEYDGLVA 913 (961)
Q Consensus 889 d~~~e~~rl~k~~~kl~~~~~~~~~ 913 (961)
|.+.-+..++++++.++.+|+.+++
T Consensus 68 d~~e~~~~l~~r~E~ie~~ik~lek 92 (121)
T PRK09343 68 DKTKVEKELKERKELLELRSRTLEK 92 (121)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888889999999999988888876
No 252
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=36.12 E-value=1e+02 Score=34.58 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 932 VQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 932 ~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
+++.++++++++++.+..+.++++
T Consensus 66 ~~~~i~~L~~~Ik~r~~~l~DmEa 89 (330)
T PF07851_consen 66 ERELIEKLEEDIKERRCQLFDMEA 89 (330)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHh
Confidence 344444444444444444444443
No 253
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=35.98 E-value=61 Score=29.92 Aligned_cols=61 Identities=21% Similarity=0.310 Sum_probs=0.0
Q ss_pred ecCCeEEEecCCCcc---ChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 874 ASEGLEAYLPLADMV---DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKN 948 (961)
Q Consensus 874 v~~~~~~~~~l~~~i---d~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~ 948 (961)
+.++..+|..+.+.+ +.+.-+..|+++++.++++++++++ -.+...+++.+++.++..+++
T Consensus 42 l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~--------------~~~~l~~~~~elk~~l~~~~~ 105 (105)
T cd00632 42 LADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLER--------------QEEDLQEKLKELQEKIQQAQK 105 (105)
T ss_pred CCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhC
No 254
>cd00938 HisRS_RNA HisRS_RNA binding domain. This short RNA-binding domain is found at the N-terminus of HisRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). This domain consists of a helix- turn- helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=35.73 E-value=1.3e+02 Score=23.45 Aligned_cols=22 Identities=23% Similarity=0.290 Sum_probs=20.3
Q ss_pred ccCCHHHHHHHHHHHHHHHHHH
Q 002136 922 EKAPEDVVRGVQEKAAEAEEKI 943 (961)
Q Consensus 922 ~kap~~vv~~~~~kl~~~~~~l 943 (961)
+||++++++.+=.+|-++++++
T Consensus 20 ~KA~k~~i~~eV~~LL~LKaql 41 (45)
T cd00938 20 EKASKEQIAEEVAKLLELKAQL 41 (45)
T ss_pred ccCCHHHHHHHHHHHHHHHHHh
Confidence 7999999999999999999886
No 255
>PRK13694 hypothetical protein; Provisional
Probab=35.71 E-value=97 Score=27.20 Aligned_cols=60 Identities=15% Similarity=0.214 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 893 EVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAF 952 (961)
Q Consensus 893 e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~ 952 (961)
-++||+.+.+.+...+.-+=......+|-.||=-.||..-+..-.+.+++-.-++-.+..
T Consensus 20 RIERLEeEkk~i~~dikdVyaEAK~~GfD~K~~r~ii~lRK~d~~er~E~EaiLe~Y~~A 79 (83)
T PRK13694 20 RIERLEEEKKTISDDIKDVYAEAKGNGFDVKALKTIIRLRKKDDDERAEEEAILDLYMDA 79 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHH
Confidence 468888888888888888888999999999999999987666666665555555444443
No 256
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=35.62 E-value=1.2e+02 Score=31.01 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcCc
Q 002136 891 SAEVQRLSKRLSKMQSEYDGLVARLSSS 918 (961)
Q Consensus 891 ~~e~~rl~k~~~kl~~~~~~~~~kl~n~ 918 (961)
..+.+.+..+.++|+.++++++.+|..+
T Consensus 72 k~~~~~lr~~~e~L~~eie~l~~~L~~e 99 (177)
T PF07798_consen 72 KSEFAELRSENEKLQREIEKLRQELREE 99 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666654
No 257
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=35.41 E-value=1.5e+02 Score=24.09 Aligned_cols=26 Identities=15% Similarity=0.238 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 929 VRGVQEKAAEAEEKINLTKNRLAFLR 954 (961)
Q Consensus 929 v~~~~~kl~~~~~~l~~~~~~l~~l~ 954 (961)
+...|+..+++.+.++++++.+..|-
T Consensus 16 i~tvk~en~~i~~~ve~i~envk~ll 41 (55)
T PF05377_consen 16 INTVKKENEEISESVEKIEENVKDLL 41 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555555554443
No 258
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=35.41 E-value=1.6e+02 Score=26.70 Aligned_cols=37 Identities=22% Similarity=0.478 Sum_probs=25.2
Q ss_pred hhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 919 KFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 919 ~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
-|+...-+++++.-+++.+.+++++.++++.++.+..
T Consensus 54 ~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~ 90 (106)
T PF01920_consen 54 MFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEK 90 (106)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666777777777777777777777766666554
No 259
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=35.26 E-value=1.6e+02 Score=29.56 Aligned_cols=52 Identities=19% Similarity=0.217 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHhHhcC----chhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 896 RLSKRLSKMQSEYDGLVARLSS----SKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFL 953 (961)
Q Consensus 896 rl~k~~~kl~~~~~~~~~kl~n----~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l 953 (961)
+..++..++++|+.++.+.+++ +.|. .-.+.+.|+.++++|++++++.+..-
T Consensus 37 ~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFA------kwaKl~Rk~~kl~~el~~~~~~~~~~ 92 (161)
T PF04420_consen 37 KSSKEQRQLRKEILQLKRELNAISAQDEFA------KWAKLNRKLDKLEEELEKLNKSLSSE 92 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-TTTSHH------HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCcHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444 5564 22446788888888888888766543
No 260
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=34.86 E-value=1.2e+02 Score=37.70 Aligned_cols=57 Identities=16% Similarity=0.300 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPE-DVVRGVQEKAAEAEEKINLTKNRLAF 952 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~-~vv~~~~~kl~~~~~~l~~~~~~l~~ 952 (961)
..+++..+.+++.+++.+++.++++|+. +|. +.+++..+++.+++.++.+++..+..
T Consensus 389 ~~~~~~~~~~~~~~~e~el~~l~~~l~~------~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~ 446 (650)
T TIGR03185 389 LQDAKSQLLKELRELEEELAEVDKKIST------IPSEEQIAQLLEELGEAQNELFRSEAEIEE 446 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788889999999999999998864 222 44455555555555555444444433
No 261
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=34.61 E-value=1.1e+02 Score=31.62 Aligned_cols=50 Identities=16% Similarity=0.209 Sum_probs=34.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcC-chhhccCCHHHHHHHHHHHHHH
Q 002136 889 DISAEVQRLSKRLSKMQSEYDGLVARLSS-SKFVEKAPEDVVRGVQEKAAEA 939 (961)
Q Consensus 889 d~~~e~~rl~k~~~kl~~~~~~~~~kl~n-~~f~~kap~~vv~~~~~kl~~~ 939 (961)
+-+-|..||+++|+.|+.+++++++...+ .+.....| .+|..+=+.|-+|
T Consensus 93 ~~dwEevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~-~lvk~e~EqLL~Y 143 (195)
T PF12761_consen 93 GTDWEEVRLKRELAELEEKLSKVEQAAESRRSDTDSKP-ALVKREFEQLLDY 143 (195)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchH-HHHHHHHHHHHHH
Confidence 56678999999999999999999998887 34333333 4444443444333
No 262
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=34.59 E-value=55 Score=30.21 Aligned_cols=67 Identities=19% Similarity=0.358 Sum_probs=35.8
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 887 MVDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVV---RGVQEKAAEAEEKINLTKNRLAFL 953 (961)
Q Consensus 887 ~id~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv---~~~~~kl~~~~~~l~~~~~~l~~l 953 (961)
++++..+...+..+++.++.+...+.+.++...=.....++.+ ...++++.++++++..+++.+..+
T Consensus 31 i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 31 IIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777776665543222111222222 223445555555555555554443
No 263
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=34.34 E-value=2e+02 Score=25.85 Aligned_cols=64 Identities=22% Similarity=0.146 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhh
Q 002136 892 AEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTK----NRLAFLRST 956 (961)
Q Consensus 892 ~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~----~~l~~l~~~ 956 (961)
.-+.||.|+..-+++|+..-++++.+=.--. +.+..+.+.++=|.+.+..+-... +++..|+.+
T Consensus 7 ~~vkRL~KE~~~Y~kE~~~q~~rle~~k~~~-~de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~ 74 (90)
T PF02970_consen 7 GVVKRLLKEEASYEKEVEEQEARLEKMKAEG-EDEYDIKKQEEVLEETKMMIPDCQQRLEKAVEDLEEF 74 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3468899999999988888888876544433 477788888888888776665444 444455544
No 264
>PHA00728 hypothetical protein
Probab=34.24 E-value=57 Score=30.38 Aligned_cols=53 Identities=23% Similarity=0.290 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 891 SAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFL 953 (961)
Q Consensus 891 ~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l 953 (961)
..|++.|.|+-+.|.+.++.++..++|+. + .+.+++.+.+.-....+.+|.+|
T Consensus 4 ~teveql~keneelkkkla~leal~nn~~----~------~~~e~lqEiEnPYTVTNRaIsEl 56 (151)
T PHA00728 4 LTEVEQLKKENEELKKKLAELEALMNNES----A------EEDEELQEIENPYTVTNRAISEL 56 (151)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHcCCC----c------hhhhhHHHhcCCceehhHHHHHh
Confidence 45889999999999999999999999976 2 23345555554444444444444
No 265
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=34.18 E-value=2e+02 Score=28.28 Aligned_cols=55 Identities=22% Similarity=0.294 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHH
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLT 946 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~ 946 (961)
++++.+..++++...+++++.+.+++.... ...+++..+.....+.+...++...
T Consensus 41 l~~~~~~~~~~l~~~~~el~~~~~~l~~~~--~~ls~~~~~~~~~~l~~~~~~l~~~ 95 (158)
T PF03938_consen 41 LQEKFKALQKELQAKQKELQKLQQKLQSQK--ATLSEEERQKRQQELQQKEQELQQF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTS------SSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccchhHHHHHHHHHHHHHHHHHHH
Confidence 445556677777777777777777776652 2444444444444444444444433
No 266
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=34.14 E-value=1.7e+02 Score=31.82 Aligned_cols=54 Identities=17% Similarity=0.271 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTV 957 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~ 957 (961)
...|++.+..++++.+++++.+..+ +.+.+.+|.+++.+..++.+.+..+++.+
T Consensus 205 ~~~ELe~~~EeL~~~Eke~~e~~~~--------------i~e~~~rl~~l~~~~~~l~k~~~~~~sKV 258 (269)
T PF05278_consen 205 KKEELEELEEELKQKEKEVKEIKER--------------ITEMKGRLGELEMESTRLSKTIKSIKSKV 258 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666766666664 36788899999999999999888887643
No 267
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=34.12 E-value=99 Score=28.84 Aligned_cols=63 Identities=16% Similarity=0.145 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002136 896 RLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTVM 958 (961)
Q Consensus 896 rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~~ 958 (961)
+..+.+..+--.++.+...|+...--....++..+.-++++++++.+++.+++.++.|..++.
T Consensus 48 ~~I~~lr~~G~sL~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~ 110 (113)
T cd01109 48 EFIKCLRNTGMSIKDIKEYAELRREGDSTIPERLELLEEHREELEEQIAELQETLAYLDYKID 110 (113)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666666665432222234677888899999999999999999988887653
No 268
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=33.48 E-value=1.7e+02 Score=34.96 Aligned_cols=60 Identities=22% Similarity=0.309 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFL 953 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l 953 (961)
+..|+++-+-++++++++.+.|++++.+.+|- +++|-.. .....+++.++..++-.+..|
T Consensus 299 l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS---~~dve~m-n~Er~~l~r~l~~i~~~~d~l 358 (581)
T KOG0995|consen 299 LKSEIEEKEEEIEKLQKENDELKKQIELQGIS---GEDVERM-NLERNKLKRELNKIQSELDRL 358 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---HHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 55677777778888888888888888888772 4444332 223334444444444444443
No 269
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=33.22 E-value=2e+02 Score=27.94 Aligned_cols=37 Identities=19% Similarity=0.242 Sum_probs=29.3
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002136 920 FVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRST 956 (961)
Q Consensus 920 f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~ 956 (961)
|+++-.++.++.-+++++.++..++.+++.++.+++-
T Consensus 87 ~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~ 123 (140)
T PRK03947 87 SAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASR 123 (140)
T ss_pred EEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455678888888888888888888888888877763
No 270
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=33.19 E-value=1.6e+02 Score=31.53 Aligned_cols=67 Identities=15% Similarity=0.201 Sum_probs=33.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhh--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 889 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFV--EKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 889 d~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~--~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
|+++++.+++.++.++...+++.+.+|++-.=. -+|=..=+...+++...++.++..+.+.++.++.
T Consensus 56 ~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~ 124 (239)
T COG1579 56 DLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEK 124 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666666666332110 0111122233444455555555555555554443
No 271
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=33.03 E-value=3e+02 Score=23.79 Aligned_cols=21 Identities=33% Similarity=0.359 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 002136 893 EVQRLSKRLSKMQSEYDGLVA 913 (961)
Q Consensus 893 e~~rl~k~~~kl~~~~~~~~~ 913 (961)
|-++|.++--++...|.++..
T Consensus 20 EGekLSk~el~~~~~IKKLr~ 40 (74)
T PF12329_consen 20 EGEKLSKKELKLNNTIKKLRA 40 (74)
T ss_pred HHHHHHHHHHhhHHHHHHHHH
Confidence 334444444444444444444
No 272
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=32.56 E-value=1.9e+02 Score=26.26 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=18.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 889 DISAEVQRLSKRLSKMQSEYDGLVA 913 (961)
Q Consensus 889 d~~~e~~rl~k~~~kl~~~~~~~~~ 913 (961)
|.+.-+..|+++++.++++++++++
T Consensus 59 ~~~~~~~~L~~~~~~~~~~i~~l~~ 83 (106)
T PF01920_consen 59 DKEEAIEELEERIEKLEKEIKKLEK 83 (106)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677778887777777777765
No 273
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=32.28 E-value=1.2e+02 Score=29.16 Aligned_cols=64 Identities=16% Similarity=0.088 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002136 893 EVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRST 956 (961)
Q Consensus 893 e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~ 956 (961)
+.-++.+.+..+--.++.+..-+....--...-+.+.+.-++++++++++++.+++.++.|..+
T Consensus 45 ~~l~~I~~lr~~G~sL~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~ 108 (133)
T cd04787 45 SRLRFILSARQLGFSLKDIKEILSHADQGESPCPMVRRLIEQRLAETERRIKELLKLRDRMQQA 108 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777777777765432222335667778888999999999988888877764
No 274
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=32.06 E-value=1.2e+02 Score=25.01 Aligned_cols=57 Identities=21% Similarity=0.136 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 899 KRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 899 k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
+....+--.++.+..-+.-..--+...+++.+.-++|+++.+++++.+++..+.|..
T Consensus 8 ~~~r~lGfsL~eI~~~l~l~~~~~~~~~~~~~~l~~~~~~i~~~i~~L~~~~~~L~~ 64 (65)
T PF09278_consen 8 RRLRELGFSLEEIRELLELYDQGDPPCADRRALLEEKLEEIEEQIAELQALRAQLEH 64 (65)
T ss_dssp HHHHHTT--HHHHHHHHHHCCSHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444445555555552222245566777788889999999999888888777765
No 275
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=31.87 E-value=1.1e+02 Score=30.80 Aligned_cols=56 Identities=18% Similarity=0.370 Sum_probs=38.4
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 888 VDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKN 948 (961)
Q Consensus 888 id~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~ 948 (961)
-++..++..|.++...++.++..+.+.+.++.-. ..+++.+++.++++++|+.++.
T Consensus 82 ~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~-----~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 82 KELREELAELKKEVKSLEAELASLSSEPTNEELR-----EEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHHHHHHHHHHHHHh
Confidence 3677777777777777777777777777777653 3455556666666666666554
No 276
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=31.77 E-value=2.7e+02 Score=26.50 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002136 892 AEVQRLSKRLSKMQSEYDGLV 912 (961)
Q Consensus 892 ~e~~rl~k~~~kl~~~~~~~~ 912 (961)
.++++|+++.+.+..||-++-
T Consensus 37 ~el~~l~~~r~~l~~Eiv~l~ 57 (120)
T PF12325_consen 37 EELARLEAERDELREEIVKLM 57 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 277
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=31.63 E-value=2e+02 Score=32.89 Aligned_cols=40 Identities=28% Similarity=0.322 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHH
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVV 929 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv 929 (961)
-++...+|=|+++||+.+..-+++||..|--.-..|.+|-
T Consensus 199 qEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia 238 (552)
T KOG2129|consen 199 QEALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIA 238 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhh
Confidence 3445688899999999999999999987766555555554
No 278
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=31.45 E-value=2e+02 Score=28.86 Aligned_cols=62 Identities=13% Similarity=0.205 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002136 891 SAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTV 957 (961)
Q Consensus 891 ~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~ 957 (961)
+.++.+|+.++..++++...++.-+..=+- .=..++.+++.+++.++.+...++|.+|++..
T Consensus 85 d~~i~~l~ek~q~l~~t~s~veaEik~L~s-----~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~ 146 (201)
T KOG4603|consen 85 DGKIVALTEKVQSLQQTCSYVEAEIKELSS-----ALTTEEMQEEIQELKKEVAGYRERLKNIKAGT 146 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334555555555555554444443332110 01345666777888888888888888888753
No 279
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=31.43 E-value=1.6e+02 Score=27.74 Aligned_cols=48 Identities=17% Similarity=0.265 Sum_probs=39.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHH
Q 002136 889 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINL 945 (961)
Q Consensus 889 d~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~ 945 (961)
+...++...+.+++..+.++.....+ -.++.|.+.+.||++.+.+|..
T Consensus 67 e~q~ki~~~~~kV~ere~eL~eA~~~---------G~~~KI~K~~~KL~ea~~eL~~ 114 (115)
T PF06476_consen 67 ERQQKIAEKQQKVAEREAELKEAQAK---------GDSDKIAKRQKKLAEAKAELKE 114 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHHHHHHHhh
Confidence 57778888888888889998888774 5568899999999999998863
No 280
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=31.42 E-value=1.9e+02 Score=29.75 Aligned_cols=30 Identities=13% Similarity=0.207 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 925 PEDVVRGVQEKAAEAEEKINLTKNRLAFLR 954 (961)
Q Consensus 925 p~~vv~~~~~kl~~~~~~l~~~~~~l~~l~ 954 (961)
-.+-+++-++++++.+.+++.++++.+.+.
T Consensus 159 ~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 159 LSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666666666554
No 281
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=31.22 E-value=1.6e+02 Score=26.92 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002136 899 KRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTV 957 (961)
Q Consensus 899 k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~ 957 (961)
+.+..+--.++.+++.+.... ++..+.-.++.++++++++.+++.++.|..++
T Consensus 51 ~~lr~~g~~l~~i~~~~~~~~------~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 103 (103)
T cd01106 51 LFLKELGFSLKEIKELLKDPS------EDLLEALREQKELLEEKKERLDKLIKTIDRTL 103 (103)
T ss_pred HHHHHcCCCHHHHHHHHHcCc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344555666777777776544 88889999999999999999999999888753
No 282
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=30.74 E-value=2.4e+02 Score=28.04 Aligned_cols=64 Identities=17% Similarity=0.315 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
+...+.+|++++.+++++++++..++ ..++.+-........-.++..++.++.++...+.+|..
T Consensus 6 Lk~~~~~L~~~~~~le~~i~~~~~~~--k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~ 69 (171)
T PF03357_consen 6 LKKTIRRLEKQIKRLEKKIKKLEKKA--KKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLES 69 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHH--HHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666555 33333433333333333444444555444444444443
No 283
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=30.45 E-value=93 Score=34.89 Aligned_cols=73 Identities=19% Similarity=0.051 Sum_probs=38.2
Q ss_pred cceEeeecccccc-HHHHHHHHHhHhcCCCCceEEEEeceEEcCCCccccccCCCcc-Cchhhhhh-cChhHHHHHHHhC
Q 002136 540 TTMLETGHDILFF-WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVI-DPIDTIKE-FGADALRFTISLG 616 (961)
Q Consensus 540 ~d~~~~G~Dil~f-w~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI-~p~dii~~-yGaDalR~~L~~~ 616 (961)
..-.+=|.|.+.. .....+.-. |.-..| ...-|.++++.+|+|+||+.+..- ....+.+. +.+.++-=+|+..
T Consensus 200 ITHViRG~D~l~~t~~Q~~L~~~--Lg~~~P--~~~H~pl~l~~~g~kLSKR~~~~~i~~~~~r~~g~~~~~~l~~L~~l 275 (314)
T PF00749_consen 200 ITHVIRGEDLLSSTPRQILLYEA--LGWPPP--PYAHLPLILNEDGKKLSKRKGAKSIELGDYREWGDPPEATLNYLARL 275 (314)
T ss_dssp -SEEEEEGGGTTCHHHHHHHHHH--CTSSS---EEEEEEEEEETTSSBSSTTCSHHBHHHHHHHHTT-THHHHHHHHHHT
T ss_pred cCeEEEccccccccHHHHHHHHH--hCCCCc--ceEeeeeeecCCCcEechhhccccccccccccCCCCHHHHHHHHHHh
Confidence 3445568887653 233223322 222223 445557788999999999988664 12222221 3344444445443
No 284
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=30.39 E-value=1.5e+02 Score=28.57 Aligned_cols=64 Identities=13% Similarity=0.077 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002136 893 EVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTV 957 (961)
Q Consensus 893 e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~ 957 (961)
+.-++.+.+..+--.++.+..-|.... ....++++.+.-++|+++++++++.+++..+.|..++
T Consensus 45 ~~l~~I~~lr~~GfsL~eI~~ll~~~~-~~~~~~~~~~~l~~k~~~i~~~i~~L~~~~~~L~~~i 108 (131)
T cd04786 45 WVLEIISSAQQAGFSLDEIRQLLPADA-SNWQHDELLAALERKVADIEALEARLAQNKAQLLVLI 108 (131)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHhccc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777777777776532 2345678888888888888888888888877776654
No 285
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=30.29 E-value=3.5e+02 Score=23.32 Aligned_cols=51 Identities=20% Similarity=0.239 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLR 954 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~ 954 (961)
.+..|+.|..+-.+|.+...+... +|.+-|.+..+++.++..+...++...
T Consensus 10 KDe~Ia~L~eEGekLSk~el~~~~--------------~IKKLr~~~~e~e~~~~~l~~~~~~~e 60 (74)
T PF12329_consen 10 KDEQIAQLMEEGEKLSKKELKLNN--------------TIKKLRAKIKELEKQIKELKKKLEELE 60 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666555554 556666666666666555555554443
No 286
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=29.80 E-value=1.4e+02 Score=34.60 Aligned_cols=31 Identities=19% Similarity=0.388 Sum_probs=15.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCch
Q 002136 889 DISAEVQRLSKRLSKMQSEYDGLVARLSSSK 919 (961)
Q Consensus 889 d~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~ 919 (961)
|.+++..-+++++.+++..++++++.|+.+.
T Consensus 372 ~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~ 402 (493)
T KOG0804|consen 372 DLEAEKKIVERKLQQLQTKLKKCQKELKEER 402 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444544455555555555555555444433
No 287
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=29.35 E-value=2.6e+02 Score=31.40 Aligned_cols=50 Identities=20% Similarity=0.262 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 899 KRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFL 953 (961)
Q Consensus 899 k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l 953 (961)
++..+++.+++..+..|+++ -.++..+..++.+.++++++..+++.|+.|
T Consensus 53 ~~~~~~~~~l~~a~~~l~~~-----~D~em~ema~~Ei~~~~~~~~~le~~L~~l 102 (363)
T COG0216 53 REYKKAQEDLEDAKEMLAEE-----KDPEMREMAEEEIKELEAKIEELEEELKIL 102 (363)
T ss_pred HHHHHHHHHHHHHHHHHhcc-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556666777777777665 478899999999999999999999988765
No 288
>PRK11020 hypothetical protein; Provisional
Probab=29.27 E-value=1.5e+02 Score=27.56 Aligned_cols=49 Identities=20% Similarity=0.337 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 898 SKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 898 ~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
..+|..|...++.++.|| +......+.+.+++++.|++.+.+.|+.++.
T Consensus 4 K~Eiq~L~drLD~~~~Kl---------aaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~ 52 (118)
T PRK11020 4 KNEIKRLSDRLDAIRHKL---------AAASLRGDAEKYAQFEKEKATLEAEIARLKE 52 (118)
T ss_pred HHHHHHHHHHHHHHHHHH---------HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555544 5677778888999999999999999998876
No 289
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=29.11 E-value=80 Score=35.26 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHH
Q 002136 898 SKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLT 946 (961)
Q Consensus 898 ~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~ 946 (961)
+.++..+|.|+++..+ +||-++-+-.-+.||++|++|+++=
T Consensus 5 eEkIk~iEeeia~tpk--------nKaTe~hig~lKaklA~Lr~El~~~ 45 (365)
T COG1163 5 EEKIKAIEEEIARTPK--------NKATEHHIGLLKAKLAELREELEKR 45 (365)
T ss_pred HHHHHHHHHHHHhccc--------chhhHHHHHHHHHHHHHHHHHHhhh
Confidence 4566667777777666 8999999999999999999999863
No 290
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=28.78 E-value=1.1e+02 Score=26.26 Aligned_cols=29 Identities=17% Similarity=0.420 Sum_probs=22.0
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhHhc
Q 002136 888 VDISAEVQRLSKRLSKMQSEYDGLVARLS 916 (961)
Q Consensus 888 id~~~e~~rl~k~~~kl~~~~~~~~~kl~ 916 (961)
.....+++.+++++++++++.+.++..+.
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~ 48 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIE 48 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888888888877776554
No 291
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=28.72 E-value=1.3e+02 Score=35.08 Aligned_cols=62 Identities=15% Similarity=0.180 Sum_probs=30.4
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHhHhcCc-h-hhccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 887 MVDISAEVQRLSKRLSKMQSEYDGLVARLSSS-K-FVEKAPEDVVRGVQEKAAEAEEKINLTKNRL 950 (961)
Q Consensus 887 ~id~~~e~~rl~k~~~kl~~~~~~~~~kl~n~-~-f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l 950 (961)
.+|++++.+-+..-+.+|+.++..++..|..= . .-..+|.=+ .-+.+.+.++.|++..+.++
T Consensus 274 vlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~--~l~~rI~aLe~QIa~er~kl 337 (434)
T PRK15178 274 DIDPKETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIP--RLSAKIKVLEKQIGEQRNRL 337 (434)
T ss_pred CcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchh--HHHHHHHHHHHHHHHHHHHh
Confidence 45666665555555555555555555555532 2 233444322 23344555555555554444
No 292
>TIGR02420 dksA RNA polymerase-binding protein DksA. The model that is the basis for this family describes a small, pleiotropic protein, DksA (DnaK suppressor A), originally named as a multicopy suppressor of temperature sensitivity of dnaKJ mutants. DksA mutants are defective in quorum sensing, virulence, etc. DksA is now understood to bind RNA polymerase directly and modulate its response to small molecules to control the level of transcription of rRNA. Nearly all members of this family are in the Proteobacteria. Whether the closest homologs outside the Proteobacteria function equivalently is unknown. The low value set for the noise cutoff allows identification of possible DksA proteins from outside the proteobacteria. TIGR02419 describes a closely related family of short sequences usually found in prophage regions of proteobacterial genomes or in known phage.
Probab=28.67 E-value=3.1e+02 Score=25.51 Aligned_cols=65 Identities=12% Similarity=0.052 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHH--HHHHHH----HHHHHHHHHHHHHHHHHHHh
Q 002136 891 SAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVV--RGVQEK----AAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 891 ~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv--~~~~~k----l~~~~~~l~~~~~~l~~l~~ 955 (961)
+.-..+|..+++.|.+++......+.+.+....=+.+.- +.+++. +...+.+|..|+.+|+.+..
T Consensus 7 ~~~k~~L~~~~~~L~~~i~~~~~~~~~~~~~~~d~~D~a~~~~~~~~~~~~~~~~~~~l~~i~~AL~ri~~ 77 (110)
T TIGR02420 7 EHFRKILLRWKQELLEEADKTLEHLQEESENFPDPADRATQEEERALELRTRDRERKLIKKIDEALKRIED 77 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344577888888888888888877766433222222222 222221 12335667788888888764
No 293
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=28.26 E-value=1e+02 Score=28.28 Aligned_cols=29 Identities=14% Similarity=0.209 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHhh
Q 002136 928 VVRGVQEKAAEAEEKINL----TKNRLAFLRST 956 (961)
Q Consensus 928 vv~~~~~kl~~~~~~l~~----~~~~l~~l~~~ 956 (961)
+.++++++|..++++++. -++.|++|++-
T Consensus 66 ~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~ 98 (100)
T PF04568_consen 66 FRKKEKEQLKKLKEKLKEEIEHHRKEIDELEKH 98 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556666666666666666 56666666543
No 294
>PF10073 DUF2312: Uncharacterized protein conserved in bacteria (DUF2312); InterPro: IPR018753 This entry is represented by Azospirillum phage Cd, Gp10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family of hypothetical bacterial proteins have no known function.
Probab=28.26 E-value=1.5e+02 Score=25.63 Aligned_cols=58 Identities=17% Similarity=0.268 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 893 EVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRL 950 (961)
Q Consensus 893 e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l 950 (961)
-++||+.+++.+...+..+-+-....+|-.|+=-.||..-+..-.+.+++-.-+.-.+
T Consensus 12 RiErLEeEk~~i~~dikdVyaEAK~~GfD~K~lr~ii~lRk~d~~~r~E~eail~~Y~ 69 (74)
T PF10073_consen 12 RIERLEEEKKAISDDIKDVYAEAKGNGFDTKALRQIIRLRKKDPDEREEEEAILDLYM 69 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHcCCHhHHHHHHHHHHHHH
Confidence 4788999999999999999999999999999999998876666555555544444333
No 295
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=28.21 E-value=49 Score=36.25 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=20.1
Q ss_pred CCCceEEEEeceEEcCCCccccccCCCc
Q 002136 567 SVPFSHVYLHGLIRDSQGRKMSKTLGNV 594 (961)
Q Consensus 567 ~~Pfk~v~~hg~v~d~~G~KMSKS~GNv 594 (961)
..| .+.-++++++.+|.|+||+.|-.
T Consensus 212 ~~P--~y~H~pll~~~~g~kLSKR~~~~ 237 (272)
T TIGR03838 212 PPP--RYLHLPLVVNADGEKLSKQNGAP 237 (272)
T ss_pred CCC--eEEechhhhCCCCCeeeccCCcc
Confidence 345 55566888899999999998753
No 296
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=28.14 E-value=5.2e+02 Score=24.40 Aligned_cols=45 Identities=13% Similarity=0.210 Sum_probs=31.3
Q ss_pred cEEEEecCCeEEEecCCCc----cChHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 869 SVHLVASEGLEAYLPLADM----VDISAEVQRLSKRLSKMQSEYDGLVA 913 (961)
Q Consensus 869 ~v~~~v~~~~~~~~~l~~~----id~~~e~~rl~k~~~kl~~~~~~~~~ 913 (961)
++...+.+.-.|.+++.+- .++++-++-++++++.+.+.++++++
T Consensus 59 ~v~~~v~~~~~v~v~iG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~ 107 (126)
T TIGR00293 59 FVKAKVKDTDKVLVSIGSGYYVEKDAEEAIEFLKKRIEELEKAIEKLQE 107 (126)
T ss_pred EEEEEeCCCCEEEEEcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444454555666666554 36777788888898888888888876
No 297
>PF10153 DUF2361: Uncharacterised conserved protein (DUF2361); InterPro: IPR019310 This entry represents the rRNA-processing protein EFG1 family. EFG1 is involved in rRNA processing.
Probab=28.06 E-value=1.8e+02 Score=27.44 Aligned_cols=41 Identities=10% Similarity=0.174 Sum_probs=31.0
Q ss_pred HHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 904 MQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKN 948 (961)
Q Consensus 904 l~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~ 948 (961)
+.+.|-.++.-|+.+ .-|++|+...+..|+.++.+++.-+.
T Consensus 2 lK~riRdieRLL~r~----~Lp~~vR~~~Er~L~~L~~~l~~~~~ 42 (114)
T PF10153_consen 2 LKKRIRDIERLLKRK----DLPADVRVEKERELEALKRELEEAER 42 (114)
T ss_pred HHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777 66888888888888888888877544
No 298
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=27.90 E-value=1.6e+02 Score=31.69 Aligned_cols=50 Identities=12% Similarity=0.138 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHH
Q 002136 897 LSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLT 946 (961)
Q Consensus 897 l~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~ 946 (961)
|.--+...+.+++++..+|+|-.--..+=...++..+..|+..+..++.|
T Consensus 110 lk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~L 159 (338)
T KOG3647|consen 110 LKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEAL 159 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666666666666655544444555555555444444444433
No 299
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=27.79 E-value=2.9e+02 Score=26.80 Aligned_cols=65 Identities=11% Similarity=0.235 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRST 956 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~ 956 (961)
+.+.+.+++.++..|+-+..++.....--+- .....+......+.++..++...+...++.+..|
T Consensus 25 l~~~i~~~d~el~QLefq~kr~~~e~~~~~~--~~~~~i~~q~~~e~~~r~e~k~~l~~ql~qv~~L 89 (131)
T PF11068_consen 25 LQEQIQQLDQELQQLEFQGKRMIKEIKKQNA--QQIQSIQQQFEQEKQERLEQKNQLLQQLEQVQKL 89 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4444566666666666666666555432211 3456677777777777788888888888887765
No 300
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=27.69 E-value=1.3e+02 Score=35.54 Aligned_cols=65 Identities=15% Similarity=0.239 Sum_probs=46.3
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhHhcCc-------hhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 888 VDISAEVQRLSKRLSKMQSEYDGLVARLSSS-------KFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFL 953 (961)
Q Consensus 888 id~~~e~~rl~k~~~kl~~~~~~~~~kl~n~-------~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l 953 (961)
-++.+++.++++++.++++.+.++++.-... .-.. .=.+...+..++++++++++..+++.++..
T Consensus 337 ~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~-~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 337 EELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLK-KLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3688889999999999999999888732111 1111 112233566778888899999999999887
No 301
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=27.57 E-value=1.8e+02 Score=24.83 Aligned_cols=46 Identities=15% Similarity=0.350 Sum_probs=30.1
Q ss_pred HHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002136 904 MQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRST 956 (961)
Q Consensus 904 l~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~ 956 (961)
++..+.+++.+++| =++-+..-+...+.++.+++.+.+.|+++++.
T Consensus 4 i~e~l~~ie~~l~~-------~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n 49 (71)
T PF10779_consen 4 IKEKLNRIETKLDN-------HEERIDKLEKRDAANEKDIKNLNKQLEKIKSN 49 (71)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666655 12234445566777788888888888888874
No 302
>COG1937 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.55 E-value=2.6e+02 Score=25.13 Aligned_cols=32 Identities=19% Similarity=0.310 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCchhh
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFV 921 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~ 921 (961)
..++.+++-.++.+++.++..+++.+.+..+.
T Consensus 4 ~~~~kkkl~~RlrRi~GQv~gI~rMlEe~~~C 35 (89)
T COG1937 4 SIEEKKKLLNRLRRIEGQVRGIERMLEEDRDC 35 (89)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcH
Confidence 45688999999999999999999999999986
No 303
>PF04518 Effector_1: Effector from type III secretion system; InterPro: IPR007606 This family contains several uncharacterised chlamydial proteins.
Probab=27.54 E-value=2.7e+02 Score=31.96 Aligned_cols=68 Identities=15% Similarity=0.229 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTV 957 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~ 957 (961)
+++|++++...++..++-+..+++.+.+-.=-.+...+-+.+-+..+..|+.++..+...|..|..++
T Consensus 205 l~~E~~~~~~di~~~~~A~~~l~~~~~~V~~d~~lT~~Qk~~l~d~l~~Y~~~l~~i~~qL~~L~~~L 272 (379)
T PF04518_consen 205 LEKEREQIRRDIKSCERAKAVLNKQLARVKADAKLTSEQKSELLDSLNNYKDNLNAISNQLSLLQSLL 272 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56677777777776666666666666665555677888888899999999999999999998888753
No 304
>PF00458 WHEP-TRS: WHEP-TRS domain; InterPro: IPR000738 A conserved domain of 46 amino acids, called WHEP-TRS has been shown [] to exist in a number of higher eukaryote aminoacyl-transfer RNA synthetases. This domain is present one to six times in the several enzymes. There are three copies in mammalian multifunctional aminoacyl-tRNA synthetase in a region that separates the N-terminal glutamyl-tRNA synthetase domain from the C-terminal prolyl-tRNA synthetase domain, and six copies in the intercatalytic region of the Drosophila enzyme. The domain is found at the N-terminal extremity of the mammalian tryptophanyl- tRNA synthetase and histidyl-tRNA synthetase, and the mammalian, insect, nematode and plant glycyl- tRNA synthetases []. This domain could contain a central alpha-helical region and may play a role in the association of tRNA-synthetases into multienzyme complexes.; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation; PDB: 1R1B_A 1D2D_A 1X59_A 1FYJ_A 2ZT8_A 2ZXF_A 2ZT7_A 2ZT6_A 2PME_A 2ZT5_A ....
Probab=27.33 E-value=2.9e+02 Score=22.55 Aligned_cols=42 Identities=17% Similarity=0.195 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHH
Q 002136 898 SKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTK 947 (961)
Q Consensus 898 ~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~ 947 (961)
+.++...-..+-.+.. ++|+.+.|..+-++|-+++.+++.+.
T Consensus 2 ~~~I~~QG~~VR~LKa--------~ka~k~~i~~aV~~Ll~LK~~~~~~t 43 (56)
T PF00458_consen 2 EAQIAAQGDKVRKLKA--------EKADKEEIDAAVAKLLELKAELKELT 43 (56)
T ss_dssp HHHHHHHHHHHHHHHH--------TT--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHc--------cCCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444455555544 58999999999999999999987663
No 305
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=27.20 E-value=1.4e+02 Score=35.79 Aligned_cols=29 Identities=21% Similarity=0.382 Sum_probs=23.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcC
Q 002136 889 DISAEVQRLSKRLSKMQSEYDGLVARLSS 917 (961)
Q Consensus 889 d~~~e~~rl~k~~~kl~~~~~~~~~kl~n 917 (961)
+..+++++++.++.+|+.+++.+.+++..
T Consensus 103 e~~~~ra~~e~ei~kl~~e~~elr~~~~~ 131 (546)
T KOG0977|consen 103 ETARERAKLEIEITKLREELKELRKKLEK 131 (546)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 46677888888888888888888887755
No 306
>smart00435 TOPEUc DNA Topoisomerase I (eukaryota). DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras
Probab=27.20 E-value=2.1e+02 Score=32.91 Aligned_cols=23 Identities=9% Similarity=0.340 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHh
Q 002136 893 EVQRLSKRLSKMQSEYDGLVARL 915 (961)
Q Consensus 893 e~~rl~k~~~kl~~~~~~~~~kl 915 (961)
.+++|+.++..++.++.+++..|
T Consensus 278 ~m~k~~~ki~~~~~~~~~~~~~~ 300 (391)
T smart00435 278 SMEKLQEKIKALKYQLKRLKKMI 300 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 307
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=27.09 E-value=2.2e+02 Score=32.47 Aligned_cols=51 Identities=12% Similarity=0.132 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002136 893 EVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTV 957 (961)
Q Consensus 893 e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~ 957 (961)
++.+|.+++.+++++.+++.+ -++..++.|..+..+|+.+.++..-++..+
T Consensus 102 ~Rk~L~~~~~el~~~k~~l~~--------------~~~~k~~~L~~l~~~L~~l~~a~~plq~~l 152 (355)
T PF09766_consen 102 QRKRLEEQLKELEQRKKKLQQ--------------ENKKKKKFLDSLPPQLKSLKKAAKPLQEYL 152 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 456677777777777777766 566777888888999999888888887754
No 308
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=27.04 E-value=2.5e+02 Score=30.10 Aligned_cols=62 Identities=18% Similarity=0.259 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
..++++..+.++...+++.++.++-. ..+. ++..-+++.+..++.++++++.++..++.++.
T Consensus 21 ~~a~l~~a~~~l~~a~~~~~r~~~L~-~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (265)
T TIGR00999 21 MAAELKVAQKRVELARKTYEREKKLF-EQGV---IPRQEFESAEYALEEAQAEVQAAKSELRSARE 82 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HcCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44667777778888888888776533 3333 46677788889999999999999988887654
No 309
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=27.01 E-value=4.2e+02 Score=23.01 Aligned_cols=61 Identities=21% Similarity=0.236 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 893 EVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 893 e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
+..+....+..+..=+...+..|+.... ....+.++....++..++.++...+..+..+.+
T Consensus 2 ~~~~f~~~~~~l~~Wl~~~e~~l~~~~~--~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~ 62 (105)
T PF00435_consen 2 QLQQFQQEADELLDWLQETEAKLSSSEP--GSDLEELEEQLKKHKELQEEIESRQERLESLNE 62 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCTH--SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 3455666777777777777777766666 333344555555777777777776666666554
No 310
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=26.73 E-value=64 Score=39.98 Aligned_cols=40 Identities=8% Similarity=0.056 Sum_probs=23.0
Q ss_pred CCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHH-HHcCCCeeecC
Q 002136 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYH-RMKGRPTLWLP 134 (961)
Q Consensus 90 ~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~-rm~G~~Vl~~~ 134 (961)
+++.+.+| -=|||.|||||. +++ .+..+. +..|++|.+..
T Consensus 31 ~~~rv~sG-i~PTG~lHLGng---~~~-aik~~~~~q~g~~~~~lI 71 (682)
T PTZ00348 31 PLIRCYDG-FEPSGRMHIAQG---IFK-AVNVNKCTQAGCEFVFWV 71 (682)
T ss_pred CCCEEEEe-eCCCCcCeeccH---HHH-HHHHHHHHhCCCeEEEEE
Confidence 34555555 556999999993 222 222222 24588876653
No 311
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=26.66 E-value=3e+02 Score=27.57 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhH
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVAR 914 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~k 914 (961)
-++|.+.|..+|.|++.||..|.+-
T Consensus 27 sEeE~eeLr~EL~KvEeEI~TLrqv 51 (162)
T PF04201_consen 27 SEEEREELRSELAKVEEEIQTLRQV 51 (162)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999883
No 312
>PRK06798 fliD flagellar capping protein; Validated
Probab=26.47 E-value=1.9e+02 Score=34.19 Aligned_cols=56 Identities=11% Similarity=0.211 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002136 892 AEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTV 957 (961)
Q Consensus 892 ~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~ 957 (961)
.....|+.++..+++++++++.+|. ...+..+++...++..+.+++.+...|.+|.
T Consensus 379 ~r~~~l~~~i~~l~~~~~~~e~rl~----------~~e~~l~~qf~ale~~ms~lnsQ~s~l~~~~ 434 (440)
T PRK06798 379 ERSKSIDNRVSKLDLKITDIDTQNK----------QKQDNIVDKYQKLESTLAALDSQLKTIKAMT 434 (440)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566666666666666666654 3455677888999999999999998888864
No 313
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=26.38 E-value=1.2e+02 Score=37.80 Aligned_cols=62 Identities=16% Similarity=0.135 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 894 VQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 894 ~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
..++++++++++++|+++++++..=.=.-..|+-..+.+.+++.++.++++.+++.|+.+-.
T Consensus 558 ~~~~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 619 (638)
T PRK10636 558 TQPLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEM 619 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778888888888888886522222234332333445788888888888887776643
No 314
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=26.07 E-value=1.7e+02 Score=33.87 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHh
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVARL 915 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~kl 915 (961)
.+++++++++++...+++.+++++.|
T Consensus 43 ~q~ei~~~~~~i~~~~~~~~kL~~~l 68 (420)
T COG4942 43 IQKEIAALEKKIREQQDQRAKLEKQL 68 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444433
No 315
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.97 E-value=2.5e+02 Score=31.43 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=21.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhH
Q 002136 889 DISAEVQRLSKRLSKMQSEYDGLVAR 914 (961)
Q Consensus 889 d~~~e~~rl~k~~~kl~~~~~~~~~k 914 (961)
+.++-..|.+++++.++++++.++++
T Consensus 215 ~~eklR~r~eeeme~~~aeq~slkRt 240 (365)
T KOG2391|consen 215 VREKLRRRREEEMERLQAEQESLKRT 240 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56777888999999999988888763
No 316
>PF02583 Trns_repr_metal: Metal-sensitive transcriptional repressor; InterPro: IPR003735 This entry describes proteins of unknown function.; PDB: 2HH7_A 3AAI_A 4ADZ_B.
Probab=25.87 E-value=2.7e+02 Score=24.67 Aligned_cols=30 Identities=13% Similarity=0.317 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcCchhh
Q 002136 892 AEVQRLSKRLSKMQSEYDGLVARLSSSKFV 921 (961)
Q Consensus 892 ~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~ 921 (961)
++..++-+++.+.++++..+++.+.++.+.
T Consensus 2 ~~k~~ll~RL~rIeGQv~gI~~Miee~~~C 31 (85)
T PF02583_consen 2 EDKKDLLNRLKRIEGQVRGIERMIEEDRDC 31 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTE-H
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 456789999999999999999999987774
No 317
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=25.84 E-value=2.8e+02 Score=28.72 Aligned_cols=27 Identities=11% Similarity=0.209 Sum_probs=14.7
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhH
Q 002136 888 VDISAEVQRLSKRLSKMQSEYDGLVAR 914 (961)
Q Consensus 888 id~~~e~~rl~k~~~kl~~~~~~~~~k 914 (961)
+++...+..|+|+...|++.|++...+
T Consensus 30 l~Lk~~~~~L~krq~~Le~kIe~e~~~ 56 (191)
T PTZ00446 30 LKNREAIDALEKKQVQVEKKIKQLEIE 56 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555444
No 318
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=25.42 E-value=2.7e+02 Score=30.99 Aligned_cols=55 Identities=24% Similarity=0.320 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 895 QRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 895 ~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
..|++++.+++.+...+++.|..+... +|..-+.++..++.+....+..|+.|..
T Consensus 109 n~L~rkl~qLr~EK~~lE~~Le~EqE~------~V~kL~k~i~~Le~e~~~~q~~le~Lr~ 163 (310)
T PF09755_consen 109 NDLSRKLNQLRQEKVELENQLEQEQEY------LVNKLQKKIERLEKEKSAKQEELERLRR 163 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH------HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 568888888888888888888776532 5666666666666655555555555543
No 319
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=25.21 E-value=90 Score=40.92 Aligned_cols=62 Identities=15% Similarity=0.140 Sum_probs=49.6
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 888 VDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNR 949 (961)
Q Consensus 888 id~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~ 949 (961)
..+++++++++++++++++.++.-.=.-.-|.-+-..-.+..++.+++++.+++.|+.+++.
T Consensus 932 ~rL~K~l~kl~~ei~~~~~kL~N~~F~~kAp~~vve~e~~kl~~~~~~l~~l~~~l~~l~~~ 993 (995)
T PTZ00419 932 AKLEKKLAKLQKSLESYLKKISIPNYEDKVPEDVRKLNDEKIDELNEEIKQLEQAIEELKSL 993 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36889999999999999999977665555677777777777788888899999888887743
No 320
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=25.20 E-value=1.9e+02 Score=30.86 Aligned_cols=64 Identities=25% Similarity=0.222 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFL 953 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l 953 (961)
++.++++.+.++..++..+..++..|..-+-.-|..+.-.++.-++...++.++..|...|...
T Consensus 125 ~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkea 188 (237)
T PF00261_consen 125 LEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEA 188 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666555555555555444445555555555555555666555555555443
No 321
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=25.12 E-value=2.3e+02 Score=30.53 Aligned_cols=99 Identities=14% Similarity=0.159 Sum_probs=53.0
Q ss_pred CCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHH
Q 002136 99 PNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYG 178 (961)
Q Consensus 99 Py~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~ 178 (961)
++.+|.+++.+-.. -+.. +.+..|..|-+|+...|-...+... ..+ .++. .|++|++.+.
T Consensus 33 i~~~G~l~~~~~~~-~~~~-~~~~~~~~~~kvl~sigg~~~~~~~-----~~~----~~~~--~r~~fi~~lv------- 92 (253)
T cd06545 33 PDANGTLNANPVRS-ELNS-VVNAAHAHNVKILISLAGGSPPEFT-----AAL----NDPA--KRKALVDKII------- 92 (253)
T ss_pred ECCCCeEEecCcHH-HHHH-HHHHHHhCCCEEEEEEcCCCCCcch-----hhh----cCHH--HHHHHHHHHH-------
Confidence 45688888764221 1122 2334455788887765543332111 011 0111 2455655443
Q ss_pred HHHHHHHHHh---CCccCCCCCccCCChhhHHHHHHHHHHHHhcCce
Q 002136 179 GTITSQIKRL---GASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLI 222 (961)
Q Consensus 179 ~~i~~~l~~l---G~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlI 222 (961)
+.+++. |+.+||.....+ ..+|..+++++-..|.+.|++
T Consensus 93 ----~~~~~~~~DGIdiDwE~~~~~-~~~~~~fv~~Lr~~l~~~~~~ 134 (253)
T cd06545 93 ----NYVVSYNLDGIDVDLEGPDVT-FGDYLVFIRALYAALKKEGKL 134 (253)
T ss_pred ----HHHHHhCCCceeEEeeccCcc-HhHHHHHHHHHHHHHhhcCcE
Confidence 333444 788999765332 357888888888888766653
No 322
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=25.09 E-value=2.4e+02 Score=34.10 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHh
Q 002136 891 SAEVQRLSKRLSKMQSEYDGLVARL 915 (961)
Q Consensus 891 ~~e~~rl~k~~~kl~~~~~~~~~kl 915 (961)
++++.+++.+++.++.+++.++.++
T Consensus 77 ~~~l~~l~~~~~~~~~~~~~~~~~~ 101 (525)
T TIGR02231 77 RKQIRELEAELRDLEDRGDALKALA 101 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555444444443
No 323
>PRK15039 transcriptional repressor RcnR to maintain nickel and cobalt homeostasis; Provisional
Probab=24.90 E-value=3.1e+02 Score=24.76 Aligned_cols=37 Identities=24% Similarity=0.224 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHH
Q 002136 891 SAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRG 931 (961)
Q Consensus 891 ~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~ 931 (961)
.++..++-+++.+++.++..+++.+.++.+ ..+|..+
T Consensus 5 ~~~k~~ll~RL~RIeGQv~gI~~Miee~~~----C~dIl~Q 41 (90)
T PRK15039 5 IRDKQKLKARASKIQGQVVALKKMLDEPHE----CAAVLQQ 41 (90)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHCCCC----HHHHHHH
Confidence 456788999999999999999999999876 4555543
No 324
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=24.81 E-value=3.3e+02 Score=26.16 Aligned_cols=65 Identities=9% Similarity=0.211 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002136 892 AEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTV 957 (961)
Q Consensus 892 ~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~ 957 (961)
++++.+.+..+.++..++++..- ++-.|-.+-=.+++.+...=+.+++.+++.-++.+.+|..+.
T Consensus 59 ~~L~~~~~~~~~i~e~~~kl~~~-~~~r~yk~eYk~llk~y~~~~~~L~k~I~~~e~iI~~fe~i~ 123 (126)
T PF09403_consen 59 AELAELKELYAEIEEKIEKLKQD-SKVRWYKDEYKELLKKYKDLLNKLDKEIAEQEQIIDNFEKIQ 123 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-GGGSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444332 455554444455666666666777777777777777776643
No 325
>PRK09039 hypothetical protein; Validated
Probab=24.68 E-value=2.7e+02 Score=31.72 Aligned_cols=26 Identities=15% Similarity=0.351 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHh
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVARL 915 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~kl 915 (961)
+..+++.|+++++.++.+|+..+.+.
T Consensus 142 L~~qI~aLr~Qla~le~~L~~ae~~~ 167 (343)
T PRK09039 142 LNQQIAALRRQLAALEAALDASEKRD 167 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777777777766654
No 326
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=24.61 E-value=3.5e+02 Score=30.06 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhcCc
Q 002136 893 EVQRLSKRLSKMQSEYDGLVARLSSS 918 (961)
Q Consensus 893 e~~rl~k~~~kl~~~~~~~~~kl~n~ 918 (961)
.+.||.|++.+|..+...++.+|..+
T Consensus 179 lvN~L~Kqm~~l~~eKr~Lq~~l~~~ 204 (310)
T PF09755_consen 179 LVNRLWKQMDKLEAEKRRLQEKLEQP 204 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 36899999999999999999999975
No 327
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=24.60 E-value=2.5e+02 Score=25.90 Aligned_cols=59 Identities=19% Similarity=0.197 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002136 895 QRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTVM 958 (961)
Q Consensus 895 ~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~~ 958 (961)
-++-+.+..+.-.++.+...+..... +++.+.-++++++++.++..++..++.|+.++.
T Consensus 48 l~~I~~lr~~G~sl~~i~~l~~~~~~-----~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~l~ 106 (108)
T cd01107 48 LNRIKYLRDLGFPLEEIKEILDADND-----DELRKLLREKLAELEAEIEELQRILRLLEDRLK 106 (108)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhcCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555556667777776666543 789999999999999999999999998887653
No 328
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=24.55 E-value=3e+02 Score=31.39 Aligned_cols=29 Identities=21% Similarity=0.207 Sum_probs=11.1
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHhHh
Q 002136 887 MVDISAEVQRLSKRLSKMQSEYDGLVARL 915 (961)
Q Consensus 887 ~id~~~e~~rl~k~~~kl~~~~~~~~~kl 915 (961)
.+|++.+...+...+..++.++..++.+|
T Consensus 202 ~~d~~~~~~~~~~~i~~L~~~l~~~~~~l 230 (362)
T TIGR01010 202 VFDPKAQSSAQLSLISTLEGELIRVQAQL 230 (362)
T ss_pred CcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443333333333333333333333
No 329
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=24.45 E-value=1.4e+02 Score=28.29 Aligned_cols=59 Identities=19% Similarity=0.263 Sum_probs=0.0
Q ss_pred ecCCeEEEecCCCc---cChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHH
Q 002136 874 ASEGLEAYLPLADM---VDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLT 946 (961)
Q Consensus 874 v~~~~~~~~~l~~~---id~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~ 946 (961)
+.++..+|-.+.++ ++.+.-+..|+++++.|+..++.+++ -.+..++++.+++++|...
T Consensus 49 l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri~tLek--------------Qe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 49 LDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELRIKTLEK--------------QEEKLQERLEELQSEIQKA 110 (119)
T ss_pred CCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
No 330
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=24.35 E-value=4.4e+02 Score=22.32 Aligned_cols=28 Identities=18% Similarity=0.408 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 928 VVRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 928 vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
.+++--+-+.+.+.++.+++..+..|.+
T Consensus 19 ~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~ 46 (69)
T PF04102_consen 19 TIEELNDVVTEQQRQIDRLQRQLRLLRE 46 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666666655
No 331
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=24.32 E-value=2.3e+02 Score=28.77 Aligned_cols=67 Identities=15% Similarity=0.152 Sum_probs=38.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 889 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 889 d~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
+..--++.|+++++...+.+..+.....|..--..-.++..++...++..++.+++.++..++.++.
T Consensus 78 ~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e 144 (203)
T KOG3433|consen 78 DRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQE 144 (203)
T ss_pred HHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555556666666666666666655544443333334445555556666666666666666666553
No 332
>PLN02943 aminoacyl-tRNA ligase
Probab=24.15 E-value=88 Score=40.76 Aligned_cols=59 Identities=8% Similarity=0.141 Sum_probs=29.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHH
Q 002136 889 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTK 947 (961)
Q Consensus 889 d~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~ 947 (961)
.+++++++++++++++++.++.-.=.-+-|.=+-..-.+..++.+++++.+++.|+.++
T Consensus 893 rL~K~l~klekei~~~~~kLsN~~F~~KAP~evv~~e~~kl~~~~~~l~~~~~~l~~l~ 951 (958)
T PLN02943 893 RLSKRLSKMQTEYDALAARLSSPKFVEKAPEDVVRGVREKAAEAEEKIKLTKNRLAFLK 951 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35555555555555555555543322233444444444445555555555555555554
No 333
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=24.10 E-value=88 Score=32.36 Aligned_cols=64 Identities=16% Similarity=0.239 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 891 SAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLR 954 (961)
Q Consensus 891 ~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~ 954 (961)
++++.....++..++.++..++.++.+-...-+.-...++.-+..+..++.++..+++++..|+
T Consensus 108 ~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~ 171 (194)
T PF08614_consen 108 EKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLE 171 (194)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555555555555554443333333444444444444444444444444443
No 334
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=23.93 E-value=4.3e+02 Score=25.06 Aligned_cols=37 Identities=27% Similarity=0.390 Sum_probs=31.5
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002136 920 FVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRST 956 (961)
Q Consensus 920 f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~ 956 (961)
|+++..++.++--+.++..+++.++.+++.+..+++-
T Consensus 80 ~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~ 116 (129)
T cd00584 80 YVEKDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQ 116 (129)
T ss_pred EEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777788888999999999999999999988888764
No 335
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=23.61 E-value=2.1e+02 Score=33.69 Aligned_cols=22 Identities=14% Similarity=0.173 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 002136 934 EKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 934 ~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
.++++++++|++++..++.|++
T Consensus 97 aq~~dle~KIkeLEaE~~~Lk~ 118 (475)
T PRK13729 97 KQRGDDQRRIEKLGQDNAALAE 118 (475)
T ss_pred hhhhhHHHHHHHHHHHHHHHHH
Confidence 4455556666666666665554
No 336
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=23.59 E-value=2.4e+02 Score=26.32 Aligned_cols=63 Identities=13% Similarity=0.048 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHhcCchhh---ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002136 895 QRLSKRLSKMQSEYDGLVARLSSSKFV---EKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTV 957 (961)
Q Consensus 895 ~rl~k~~~kl~~~~~~~~~kl~n~~f~---~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~ 957 (961)
-++-+.+..+--.++.+...++....- ....+++.+.-++++++++++++.++...+.|..++
T Consensus 46 l~~I~~lr~~G~sl~eI~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~l 111 (112)
T cd01282 46 VRQIRRLLAAGLTLEEIREFLPCLRGGEPTFRPCPDLLAVLRRELARIDRQIADLTRSRDRLDAYL 111 (112)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhCCCccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555556666666655543222 244567888899999999999999999888887654
No 337
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=23.54 E-value=2e+02 Score=27.13 Aligned_cols=63 Identities=22% Similarity=0.106 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002136 895 QRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTV 957 (961)
Q Consensus 895 ~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~ 957 (961)
-++.+.+..+--.++.+...++...--....+++.+.-++++++++++++.++...+.|..++
T Consensus 47 l~~I~~lr~~G~sl~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (123)
T cd04770 47 LRFIRRAQALGFSLAEIRELLSLRDDGAAPCAEVRALLEEKLAEVEAKIAELQALRAELAGLL 109 (123)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555655666666666543221233466778888889999999988888888877654
No 338
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=23.50 E-value=71 Score=27.41 Aligned_cols=23 Identities=22% Similarity=0.484 Sum_probs=12.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHH
Q 002136 889 DISAEVQRLSKRLSKMQSEYDGL 911 (961)
Q Consensus 889 d~~~e~~rl~k~~~kl~~~~~~~ 911 (961)
++++++++++++.++|+.+++.+
T Consensus 28 ~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 28 ELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 35555555555555555555544
No 339
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=23.44 E-value=50 Score=38.94 Aligned_cols=26 Identities=23% Similarity=0.509 Sum_probs=16.2
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 888 VDISAEVQRLSKRLSKMQSEYDGLVA 913 (961)
Q Consensus 888 id~~~e~~rl~k~~~kl~~~~~~~~~ 913 (961)
++..++|+.|+||+++|+++++.+++
T Consensus 27 ~~~~qkie~L~kql~~Lk~q~~~l~~ 52 (489)
T PF11853_consen 27 IDLLQKIEALKKQLEELKAQQDDLND 52 (489)
T ss_pred hHHHHHHHHHHHHHHHHHHhhccccc
Confidence 45555677777777777776664333
No 340
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=23.41 E-value=1.2e+02 Score=39.35 Aligned_cols=59 Identities=15% Similarity=0.219 Sum_probs=47.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHH
Q 002136 889 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTK 947 (961)
Q Consensus 889 d~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~ 947 (961)
.+++++++++++++++++.++.-.=.-.-|.=+-+.-.+..++.+++++.+++.|+.++
T Consensus 815 rL~K~l~kl~~ei~~~~~kL~n~~F~~KAP~~vve~e~~kl~~~~~~~~~l~~~l~~l~ 873 (874)
T PRK05729 815 RLEKELAKLEKEIERVEKKLSNEGFVAKAPEEVVEKEREKLAEYEEKLAKLKERLARLK 873 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 58899999999999999998875444455777777777777888888888888887764
No 341
>PRK11352 regulator protein FrmR; Provisional
Probab=23.40 E-value=3.3e+02 Score=24.56 Aligned_cols=30 Identities=17% Similarity=0.308 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcCchhh
Q 002136 892 AEVQRLSKRLSKMQSEYDGLVARLSSSKFV 921 (961)
Q Consensus 892 ~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~ 921 (961)
.+..++-+++.++++++..+++.+.++.+.
T Consensus 6 ~~k~~ll~RL~Ri~GQv~gi~~Mie~~~~C 35 (91)
T PRK11352 6 EEKKKVLTRVRRIRGQIDALERSLEGDAEC 35 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Confidence 467889999999999999999999998874
No 342
>PRK14011 prefoldin subunit alpha; Provisional
Probab=23.29 E-value=7.3e+02 Score=24.46 Aligned_cols=47 Identities=11% Similarity=0.150 Sum_probs=31.2
Q ss_pred cEEEEecCCeEEEecCCCcc----ChHHHHHHHHHHHHHHHHHHHHHHhHh
Q 002136 869 SVHLVASEGLEAYLPLADMV----DISAEVQRLSKRLSKMQSEYDGLVARL 915 (961)
Q Consensus 869 ~v~~~v~~~~~~~~~l~~~i----d~~~e~~rl~k~~~kl~~~~~~~~~kl 915 (961)
+|...+.+.-.|.+.+..-+ +.+.-+..++++++.+++..+++...|
T Consensus 61 yV~g~i~d~dkVlVdIGtGy~VEk~~~eA~~~~~~ri~~l~~~~~~l~~~i 111 (144)
T PRK14011 61 FLKAKIVDPDKAILGVGSDIYLEKDVSEVIEDFKKSVEELDKTKKEGNKKI 111 (144)
T ss_pred EEeEEecCCCeEEEEccCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555544432 677778889999999999988888743
No 343
>COG4396 Mu-like prophage host-nuclease inhibitor protein Gam [General function prediction only]
Probab=23.18 E-value=4.4e+02 Score=25.51 Aligned_cols=58 Identities=17% Similarity=0.215 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 892 AEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 892 ~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
.|+.+..+++..||.|..+|+--++++.= ++-+..--+++.+.+++..|.+.+.....
T Consensus 18 eeV~~~Ir~iGDlqRE~~RLeTemnDk~a------ai~e~Yapq~~~lk~EI~~L~k~vq~yCe 75 (170)
T COG4396 18 EEVTAFIRQIGDLQREVKRLETEMNDKKA------AIEEEYAPQAAPLKAEIMSLTKRVQAYCE 75 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHh------HHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 47888999999999999999999988643 35667777889999999999988876544
No 344
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=23.18 E-value=2.5e+02 Score=27.67 Aligned_cols=22 Identities=18% Similarity=0.486 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q 002136 893 EVQRLSKRLSKMQSEYDGLVAR 914 (961)
Q Consensus 893 e~~rl~k~~~kl~~~~~~~~~k 914 (961)
.+.++...+..++..+++++.+
T Consensus 60 ~~~~l~~d~~~l~~~~~rL~~~ 81 (151)
T PF11559_consen 60 KLRRLRSDIERLQNDVERLKEQ 81 (151)
T ss_pred HHHHHHhHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 345
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=23.12 E-value=2.3e+02 Score=31.06 Aligned_cols=25 Identities=20% Similarity=0.395 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhc
Q 002136 892 AEVQRLSKRLSKMQSEYDGLVARLS 916 (961)
Q Consensus 892 ~e~~rl~k~~~kl~~~~~~~~~kl~ 916 (961)
++++...++++++..+++.....|.
T Consensus 84 ~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 84 KRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 346
>PF15456 Uds1: Up-regulated During Septation
Probab=23.06 E-value=3.3e+02 Score=26.11 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 002136 933 QEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 933 ~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
..|..++..++..+++.+..+++
T Consensus 87 ~rk~ee~~~eL~~le~R~~~~~~ 109 (124)
T PF15456_consen 87 DRKCEELAQELWKLENRLAEVRQ 109 (124)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHH
Confidence 34566666777777777766665
No 347
>PF04918 DltD_M: DltD central region; InterPro: IPR007002 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the central region of DltD.; PDB: 3BMA_C.
Probab=22.99 E-value=36 Score=34.21 Aligned_cols=18 Identities=22% Similarity=0.401 Sum_probs=10.0
Q ss_pred CCCceeeeeccceeeecc
Q 002136 403 GGEVIEPLVSKQWFVTME 420 (961)
Q Consensus 403 ~~~~v~~~~~~qwF~~~~ 420 (961)
.|..+++++|||||.+-+
T Consensus 23 k~KK~V~iiSPQWF~k~G 40 (163)
T PF04918_consen 23 KNKKAVFIISPQWFTKKG 40 (163)
T ss_dssp TT-EEEEE--GGG--TT-
T ss_pred cCCcEEEEECCcccCCCC
Confidence 477889999999999754
No 348
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=22.97 E-value=3.8e+02 Score=29.52 Aligned_cols=58 Identities=10% Similarity=0.130 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 894 VQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 894 ~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
+..++.++..+++++++.+.... .+ .+++.-.+..+.+++.++.+++.++..++.++.
T Consensus 73 ~~~~~~~~~~~~~~~~r~~~L~~-~~---~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 130 (322)
T TIGR01730 73 LAAAEAQLELAQRSFERAERLVK-RN---AVSQADLDDAKAAVEAAQADLEAAKASLASAQL 130 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-CC---CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555443332 22 345666777777788888888877777777665
No 349
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=22.69 E-value=2.8e+02 Score=26.40 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002136 891 SAEVQRLSKRLSKMQSEYDGL 911 (961)
Q Consensus 891 ~~e~~rl~k~~~kl~~~~~~~ 911 (961)
...+.+++-++..++.+++++
T Consensus 22 ~s~lr~~E~E~~~l~~el~~l 42 (120)
T PF12325_consen 22 QSQLRRLEGELASLQEELARL 42 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443
No 350
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=22.68 E-value=2e+02 Score=32.48 Aligned_cols=23 Identities=13% Similarity=0.128 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002136 928 VVRGVQEKAAEAEEKINLTKNRL 950 (961)
Q Consensus 928 vv~~~~~kl~~~~~~l~~~~~~l 950 (961)
.++...++.++++++++.+++.+
T Consensus 245 ~i~~~~~~k~~l~~eI~e~~~~~ 267 (325)
T PF08317_consen 245 KIEELEEQKQELLAEIAEAEKIR 267 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555443
No 351
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=22.30 E-value=4.8e+02 Score=24.49 Aligned_cols=38 Identities=21% Similarity=0.354 Sum_probs=31.2
Q ss_pred chhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 918 SKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 918 ~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
.-|+.+..++.++.-.++++.++.++..+++.+..+.+
T Consensus 78 ~~~ve~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~ 115 (129)
T cd00890 78 GVYVEKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQD 115 (129)
T ss_pred CEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888888888888888888888877765
No 352
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=22.27 E-value=2.7e+02 Score=28.62 Aligned_cols=29 Identities=7% Similarity=0.245 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 927 DVVRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 927 ~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
+..+...+++++++.|+++.++.++.|+.
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~Lkk 182 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKK 182 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777778888887777777764
No 353
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=22.24 E-value=3.1e+02 Score=29.99 Aligned_cols=64 Identities=16% Similarity=0.186 Sum_probs=41.5
Q ss_pred CCCccChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 884 LADMVDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 884 l~~~id~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
|..+-|.|+.++....+..+++.+|++++.| +|.- ..+..-++.|..++++....+++|.+++.
T Consensus 130 LK~IR~~E~sl~p~R~~r~~l~d~I~kLk~k--~P~s------~kl~~LeqELvraEae~lvaEAqL~n~kR 193 (271)
T PF13805_consen 130 LKSIRNREESLQPSRDRRRKLQDEIAKLKYK--DPQS------PKLVVLEQELVRAEAENLVAEAQLSNIKR 193 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTT------TTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHhHHHHHHHHHHHhc--CCCC------hHHHHHHHHHHHHHHHhhHHHHHHHHhhH
Confidence 3333478888889999999999999999765 3321 12333444466666666666666666554
No 354
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=22.02 E-value=2e+02 Score=32.19 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 928 VVRGVQEKAAEAEEKINLTKNRLAF 952 (961)
Q Consensus 928 vv~~~~~kl~~~~~~l~~~~~~l~~ 952 (961)
.++...++.+++++++..++..+++
T Consensus 240 ~I~~~~~~k~e~~~~I~~ae~~~~~ 264 (312)
T smart00787 240 KIEDLTNKKSELNTEIAEAEKKLEQ 264 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5556666666666666666664433
No 355
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.94 E-value=77 Score=26.45 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=15.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHH
Q 002136 889 DISAEVQRLSKRLSKMQSEYDGL 911 (961)
Q Consensus 889 d~~~e~~rl~k~~~kl~~~~~~~ 911 (961)
-...++.+++|++++++++++++
T Consensus 45 ~~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 45 RLRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 45566777777777777777654
No 356
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=21.88 E-value=1.8e+02 Score=29.97 Aligned_cols=26 Identities=15% Similarity=0.296 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHh
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVARL 915 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~kl 915 (961)
....+..|++++..|+.++..++..|
T Consensus 114 ~~~~l~~l~~~~~~L~~~~~~l~~~l 139 (194)
T PF08614_consen 114 KERRLAELEAELAQLEEKIKDLEEEL 139 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444333
No 357
>PHA02629 A-type inclusion body protein; Provisional
Probab=21.86 E-value=3.4e+02 Score=21.45 Aligned_cols=51 Identities=10% Similarity=-0.007 Sum_probs=35.5
Q ss_pred HHHHHhHhcCchhh--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002136 908 YDGLVARLSSSKFV--EKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTVM 958 (961)
Q Consensus 908 ~~~~~~kl~n~~f~--~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~~ 958 (961)
|+.+++||.+-+-- .+.--.+-+-+|+..+-+++++.+-.+.++.|..++-
T Consensus 5 iadle~klrd~gng~~gngc~s~c~ferk~iavleaelr~~metik~lekf~e 57 (61)
T PHA02629 5 IADLEKKLRDGGNGNGGNGCTSSCEFERKIIAVLEAELRKSMETIKALEKFME 57 (61)
T ss_pred HHHHHHHHHccCCCCCCCCccchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555666543221 2333567889999999999999998888888877653
No 358
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=21.83 E-value=3.1e+02 Score=27.95 Aligned_cols=28 Identities=18% Similarity=0.378 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 927 DVVRGVQEKAAEAEEKINLTKNRLAFLR 954 (961)
Q Consensus 927 ~vv~~~~~kl~~~~~~l~~~~~~l~~l~ 954 (961)
+..+..++++..++...+.+.+.+.++.
T Consensus 123 ~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 123 ELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555544444444444443
No 359
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis]
Probab=21.75 E-value=36 Score=36.93 Aligned_cols=53 Identities=15% Similarity=0.138 Sum_probs=32.8
Q ss_pred cCCcceEeeeccccc-cHHHHHHHHHhHhcCCCCceEEEEeceEEcCC-CccccccCCC
Q 002136 537 FYPTTMLETGHDILF-FWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQ-GRKMSKTLGN 593 (961)
Q Consensus 537 ~~P~d~~~~G~Dil~-fw~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~-G~KMSKS~GN 593 (961)
+.-+|..+.|-||-. |=+++-..-.+.. +. .-.+.|.|+-... |+|||+|--|
T Consensus 175 ~L~vD~qfgGvDQRKIf~~A~eylp~l~y--kK--rihLmnpMvPGL~q~~KMSsSd~~ 229 (360)
T KOG2144|consen 175 YLEVDAQFGGVDQRKIFVLAEEYLPDLGY--KK--RIHLMNPMVPGLAQGEKMSSSDPL 229 (360)
T ss_pred HHhhhHHhcCccHHHHHHHHHHhhhhhCc--cc--ceeecCCCCccccccCccccCCcc
Confidence 346889999999853 3233332222211 22 2567888887666 9999999443
No 360
>PRK01203 prefoldin subunit alpha; Provisional
Probab=21.56 E-value=7.5e+02 Score=23.96 Aligned_cols=42 Identities=14% Similarity=0.236 Sum_probs=19.5
Q ss_pred cEEEEecCCeEEEecCCCccChHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 869 SVHLVASEGLEAYLPLADMVDISAEVQRLSKRLSKMQSEYDGLVA 913 (961)
Q Consensus 869 ~v~~~v~~~~~~~~~l~~~id~~~e~~rl~k~~~kl~~~~~~~~~ 913 (961)
+|...+.+.-.+-+.+..-+=+++..++ +++.++++++++++
T Consensus 60 YV~gki~d~~kVlVdIGTGy~VEK~~e~---kie~L~~~ie~Le~ 101 (130)
T PRK01203 60 FADGNIKKDKDLIVPIGSGVYIAEERER---TIERLKENLEDLKD 101 (130)
T ss_pred eEeEEecCCCeEEEEcCCCeEEEecHHH---HHHHHHHHHHHHHH
Confidence 3433444444455555444333333332 55555666655555
No 361
>PHA02562 46 endonuclease subunit; Provisional
Probab=21.43 E-value=2.2e+02 Score=34.45 Aligned_cols=67 Identities=13% Similarity=0.194 Sum_probs=43.3
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 888 VDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLR 954 (961)
Q Consensus 888 id~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~ 954 (961)
.+.++++..+.++...++.++++++..+.|-.=--...++.+...+.+++.++.+++.+++.++.++
T Consensus 216 ~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~ 282 (562)
T PHA02562 216 ARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYE 282 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3577788888888888888888888888765421122344455555566666666666666555553
No 362
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=21.41 E-value=2.1e+02 Score=33.95 Aligned_cols=65 Identities=15% Similarity=0.325 Sum_probs=32.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 889 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVV-------RGVQEKAAEAEEKINLTKNRLAFLR 954 (961)
Q Consensus 889 d~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv-------~~~~~kl~~~~~~l~~~~~~l~~l~ 954 (961)
+.+.++++++.+++.++.++..+++...+ +....+-..+. ....+++.+.+.++..+++.++..+
T Consensus 240 ~~~~~i~~l~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~ 311 (457)
T TIGR01000 240 TIQQQIDQLQKSIASYQVQKAGLTKSTAS-NYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLK 311 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCccc-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777766544443 22222222222 2334444455555555555554433
No 363
>PRK13599 putative peroxiredoxin; Provisional
Probab=21.11 E-value=95 Score=32.72 Aligned_cols=51 Identities=10% Similarity=0.134 Sum_probs=29.8
Q ss_pred CCceeecCCCCccccc--ccccCCCchHHHHHHHHHHHHHcCCccccccccccCCcccCC
Q 002136 346 LPILNVMNKDGTLNEV--AGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRG 403 (961)
Q Consensus 346 l~~~~~~~~~G~~~~~--~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~ 403 (961)
++..=++|.+|++... .+...|.... .|++.|+. +.....+....|..|.-
T Consensus 119 ~R~tfIID~dG~Ir~~~~~p~~~gr~~~----eilr~l~~---lq~~~~~~~~~p~~w~~ 171 (215)
T PRK13599 119 VRAVFIVDDKGTIRLIMYYPQEVGRNVD----EILRALKA---LQTADQYGVALPEKWPN 171 (215)
T ss_pred eeEEEEECCCCEEEEEEEcCCCCCCCHH----HHHHHHHH---hhhhhhcCCCcCCCCCC
Confidence 4566789999987543 2233454433 34444443 23344456677999985
No 364
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=21.07 E-value=3.6e+02 Score=23.00 Aligned_cols=15 Identities=13% Similarity=0.206 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 002136 937 AEAEEKINLTKNRLA 951 (961)
Q Consensus 937 ~~~~~~l~~~~~~l~ 951 (961)
.+++++++.+++.|+
T Consensus 50 ~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 50 NKLKEENEALRKELE 64 (69)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 365
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=20.94 E-value=3.1e+02 Score=26.92 Aligned_cols=60 Identities=18% Similarity=0.254 Sum_probs=29.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcC-------chhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 889 DISAEVQRLSKRLSKMQSEYDGLVARLSS-------SKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAF 952 (961)
Q Consensus 889 d~~~e~~rl~k~~~kl~~~~~~~~~kl~n-------~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~ 952 (961)
..+.+|.-|++++..++.++++++.+|.. ..-... -.+.-..++..++.++...+..|..
T Consensus 32 ~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~----~~E~l~rriq~LEeele~ae~~L~e 98 (143)
T PF12718_consen 32 QKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKS----NAEQLNRRIQLLEEELEEAEKKLKE 98 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----hHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555543 222111 1224445555555555555555543
No 366
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=20.84 E-value=3.2e+02 Score=34.05 Aligned_cols=56 Identities=13% Similarity=0.077 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHh
Q 002136 900 RLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKI--------NLTKNRLAFLRS 955 (961)
Q Consensus 900 ~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l--------~~~~~~l~~l~~ 955 (961)
.+.+++..+-+++.+|+.+.|.+..+++-+++.+++++++++=| +.+++++++|++
T Consensus 540 akN~lEs~Iy~~r~~L~~~~~~~~~t~ee~~~l~~~l~~~~~wL~~~~~~~~~~~~~kl~eL~~ 603 (653)
T PTZ00009 540 AKNGLENYCYSMKNTLQDEKVKGKLSDSDKATIEKAIDEALEWLEKNQLAEKEEFEHKQKEVES 603 (653)
T ss_pred HHhhhHHHHHHHHHHHhhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 34456777778888887666888899998888888887776544 445555665554
No 367
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=20.73 E-value=7.2e+02 Score=23.49 Aligned_cols=44 Identities=14% Similarity=0.249 Sum_probs=28.3
Q ss_pred EEEEecCCeEEEecCCCcc----ChHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 870 VHLVASEGLEAYLPLADMV----DISAEVQRLSKRLSKMQSEYDGLVA 913 (961)
Q Consensus 870 v~~~v~~~~~~~~~l~~~i----d~~~e~~rl~k~~~kl~~~~~~~~~ 913 (961)
+...+.+.-++.+++.+-+ +++.-+.-+.++++.+++.++.+++
T Consensus 61 ~~~~i~~~~~v~v~iG~g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~ 108 (129)
T cd00584 61 VKAKVKDTDKVLVDLGTGYYVEKDLEEAIEFLDKKIEELTKQIEKLQK 108 (129)
T ss_pred EeEEeCCCCEEEEEcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444556666665543 5666677788888888887777765
No 368
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=20.73 E-value=3.2e+02 Score=32.63 Aligned_cols=62 Identities=13% Similarity=0.306 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 893 EVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVV---RGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 893 e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv---~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
+++=+++++..|+.+++.++.+|..-.. ....+++. +.-.+++..++..++.|+..++.|+.
T Consensus 164 Q~~L~~~Rl~~L~~qi~~~~~~l~~~~~-~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~ 228 (475)
T PF10359_consen 164 QIELIQERLDELEEQIEKHEEKLGELEL-NPDDPELKSDIEELERHISSLKERIEFLENMLEDLED 228 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556788899999999999999888655 33333333 23334455666666666666666654
No 369
>cd04781 HTH_MerR-like_sg6 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 6) with at least two conserved cysteines present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, an
Probab=20.68 E-value=3.6e+02 Score=25.37 Aligned_cols=58 Identities=22% Similarity=0.142 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002136 897 LSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTVM 958 (961)
Q Consensus 897 l~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~~ 958 (961)
+.+.+..+--.++.+...+++.+ ......+.-.+++++++++++.+++.++.|..++.
T Consensus 48 ~I~~lr~~G~~L~eI~~~l~~~~----~~~~~~~~l~~~~~~l~~~i~~l~~~~~~L~~~~~ 105 (120)
T cd04781 48 LIALGRAAGFSLDEIQAMLSHDG----KPPIDRQLLKAKAAELDQQIQRLQAMRELLRHVAQ 105 (120)
T ss_pred HHHHHHHcCCCHHHHHHHHhccC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44555555666777777776653 33444566778888888888888888888877654
No 370
>TIGR02044 CueR Cu(I)-responsive transcriptional regulator. This model represents the copper-, silver- and gold- (I) responsive transcriptional activator of the gamma proteobacterial copper efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X7-Cys. This family also lacks a conserved cysteine at the N-terminal end of the dimerization helix which is required for the binding of divalent metals such as zinc; here it is replaced by a serine residue.
Probab=20.42 E-value=2.7e+02 Score=26.56 Aligned_cols=63 Identities=22% Similarity=0.142 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002136 895 QRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTV 957 (961)
Q Consensus 895 ~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~ 957 (961)
-++.+.+..+--.++.+...|..-.--....+++.+.-.+++++++++++.++...+.|..++
T Consensus 47 l~~I~~lr~~G~sL~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (127)
T TIGR02044 47 LRLISRARQVGFSLEECKELLNLWNDPNRTSADVKARTLEKVAEIERKISELQSMRDQLEALA 109 (127)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555566666555421111123466777788888999999988888888887754
No 371
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=20.18 E-value=88 Score=36.96 Aligned_cols=26 Identities=12% Similarity=0.391 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhc
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVARLS 916 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~kl~ 916 (961)
..++++.++ ||+.|++||+.|++++.
T Consensus 23 ~~~~~~~~q-kie~L~kql~~Lk~q~~ 48 (489)
T PF11853_consen 23 MADDIDLLQ-KIEALKKQLEELKAQQD 48 (489)
T ss_pred hhhhhHHHH-HHHHHHHHHHHHHHhhc
Confidence 455666666 88888888888888776
No 372
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=20.09 E-value=2.9e+02 Score=32.47 Aligned_cols=61 Identities=15% Similarity=0.209 Sum_probs=33.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 889 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFL 953 (961)
Q Consensus 889 d~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l 953 (961)
....++..|++++.++.|++.+..+. .++- .+-.+-..+.++++.++++++..+++.+..+
T Consensus 39 ~l~~~~~~lr~~rn~~sk~i~~~~~~--~~~~--~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (425)
T PRK05431 39 ELQTELEELQAERNALSKEIGQAKRK--GEDA--EALIAEVKELKEEIKALEAELDELEAELEEL 99 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc--CCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888888888764322 1110 0011122334556666666666666655443
Done!