Query 002136
Match_columns 961
No_of_seqs 394 out of 3175
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 13:52:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002136.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002136hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gax_A Valrs, valyl-tRNA synth 100.0 6E-194 2E-198 1775.4 78.5 854 58-953 2-861 (862)
2 1ffy_A Isoleucyl-tRNA syntheta 100.0 7E-162 2E-166 1502.8 50.8 770 59-859 14-861 (917)
3 1ile_A Ilers, isoleucyl-tRNA s 100.0 2E-158 8E-163 1469.4 54.0 740 58-818 4-821 (821)
4 1wz2_A Leucyl-tRNA synthetase; 100.0 5E-141 2E-145 1329.2 52.3 719 61-820 2-858 (967)
5 4arc_A Leucine--tRNA ligase; l 100.0 5E-135 2E-139 1244.9 50.8 689 56-874 18-879 (880)
6 2v0c_A Aminoacyl-tRNA syntheta 100.0 3E-130 1E-134 1214.1 55.3 685 62-874 3-876 (878)
7 1wkb_A Leucyl-tRNA synthetase; 100.0 6E-128 2E-132 1199.0 52.7 672 61-773 2-810 (810)
8 3u1f_A Methionyl-tRNA syntheta 100.0 2.9E-92 9.9E-97 844.4 36.5 474 87-775 6-500 (542)
9 1rqg_A Methionyl-tRNA syntheta 100.0 2.7E-91 9.3E-96 852.9 38.5 493 90-775 2-522 (722)
10 3h99_A Methionyl-tRNA syntheta 100.0 3.5E-87 1.2E-91 800.9 27.6 494 86-787 14-528 (560)
11 3kfl_A Methionyl-tRNA syntheta 100.0 7.7E-86 2.6E-90 787.2 34.3 483 78-775 14-516 (564)
12 4dlp_A Aminoacyl-tRNA syntheta 100.0 3.9E-85 1.3E-89 779.3 36.5 463 89-775 24-499 (536)
13 2x1l_A Methionyl-tRNA syntheta 100.0 1E-84 3.4E-89 775.2 35.4 466 87-775 9-492 (524)
14 2d5b_A Methionyl-tRNA syntheta 100.0 1.5E-83 5.2E-88 761.6 30.2 458 89-775 2-470 (500)
15 2csx_A Methionyl-tRNA syntheta 100.0 2.4E-81 8.3E-86 741.4 28.7 454 89-775 4-469 (497)
16 3tqo_A Cysteinyl-tRNA syntheta 100.0 6.9E-44 2.4E-48 408.2 22.5 346 90-723 24-372 (462)
17 3sp1_A Cysteinyl-tRNA syntheta 100.0 7.9E-44 2.7E-48 408.9 16.6 350 92-714 43-412 (501)
18 3c8z_A Cysteinyl-tRNA syntheta 100.0 3.7E-42 1.3E-46 395.2 28.1 348 78-714 31-385 (414)
19 1li5_A Cysrs, cysteinyl-tRNA s 100.0 1.2E-40 4E-45 386.4 17.5 353 80-725 14-372 (461)
20 1wka_A Valyl-tRNA synthetase; 100.0 1.2E-37 4.1E-42 304.3 16.4 140 250-393 3-146 (147)
21 1wny_A Isoleucyl-tRNA syntheta 100.0 1.1E-34 3.6E-39 295.7 14.4 145 250-396 2-186 (186)
22 2ajg_A Leucyl-tRNA synthetase; 100.0 1.9E-31 6.6E-36 273.9 15.3 139 250-389 9-194 (196)
23 3fnr_A Arginyl-tRNA synthetase 100.0 6.9E-30 2.4E-34 294.3 25.5 198 542-762 239-451 (464)
24 3o0a_A Leucyl-tRNA synthetase 100.0 1.4E-30 4.9E-35 270.5 14.8 129 265-394 38-218 (219)
25 2wfg_A Cytosolic leucyl-tRNA s 100.0 8.8E-29 3E-33 264.2 11.4 135 264-398 32-257 (261)
26 2zue_A Arginyl-tRNA synthetase 99.9 1.6E-26 5.6E-31 277.0 26.6 177 572-762 411-626 (629)
27 1iq0_A Arginyl-tRNA synthetase 99.9 9.9E-27 3.4E-31 278.3 23.6 176 572-762 381-589 (592)
28 2wfd_A Leucyl-tRNA synthetase, 99.9 3.4E-27 1.2E-31 251.1 14.3 136 252-390 6-250 (252)
29 3pz6_A Leurs, leucyl-tRNA synt 99.9 4.9E-27 1.7E-31 248.5 7.9 156 232-392 47-306 (311)
30 1irx_A Lysyl-tRNA synthetase; 99.9 1.8E-26 6.1E-31 272.9 1.2 127 90-224 20-152 (523)
31 1f7u_A Arginyl-tRNA synthetase 99.8 5.4E-19 1.9E-23 210.3 28.3 145 79-229 132-322 (607)
32 3aii_A Glutamyl-tRNA synthetas 99.1 8.3E-10 2.8E-14 127.8 14.4 94 93-224 97-190 (553)
33 2o5r_A Glutamyl-tRNA synthetas 99.0 3.5E-09 1.2E-13 122.6 17.9 99 91-225 12-117 (481)
34 2cfo_A Glutamyl-tRNA synthetas 98.9 1.9E-08 6.6E-13 116.4 17.4 92 95-224 4-96 (492)
35 2hz7_A Glutaminyl-tRNA synthet 98.8 1.8E-07 6.3E-12 112.9 23.8 95 93-224 67-161 (851)
36 3al0_C Glutamyl-tRNA(Gln) amid 98.8 2.6E-08 8.9E-13 117.8 14.8 96 91-225 129-233 (592)
37 2ja2_A Glutamyl-tRNA synthetas 98.8 1E-07 3.6E-12 110.1 19.3 94 94-225 8-110 (498)
38 1j09_A Glutamyl-tRNA synthetas 98.8 5E-08 1.7E-12 112.3 15.2 93 95-225 4-105 (468)
39 1qtq_A GLNRS, protein (glutami 98.8 4.2E-07 1.4E-11 105.4 22.4 95 93-224 27-121 (553)
40 3afh_A Glutamyl-tRNA synthetas 98.7 3.8E-07 1.3E-11 105.4 19.8 94 94-225 27-129 (488)
41 4g6z_A Glutamate-tRNA ligase; 98.6 1E-06 3.5E-11 101.2 18.8 94 94-225 27-121 (490)
42 1nzj_A Hypothetical protein YA 97.8 2.9E-05 9.8E-10 84.3 7.0 94 94-225 7-101 (298)
43 2cyb_A Tyrosyl-tRNA synthetase 97.1 0.00057 2E-08 75.2 7.4 74 537-618 168-241 (323)
44 4gri_A Glutamate--tRNA ligase; 97.1 0.00079 2.7E-08 78.7 8.9 97 95-225 27-128 (512)
45 2lw1_A ABC transporter ATP-bin 95.7 0.056 1.9E-06 47.3 9.6 68 888-956 18-85 (89)
46 2yxn_A Tyrosyl-tRNA synthetase 95.4 0.012 4.1E-07 64.5 5.2 72 538-615 190-262 (322)
47 1jil_A Tyrrs, tyrosyl-tRNA syn 95.3 0.012 4.1E-07 66.7 5.1 72 538-615 185-258 (420)
48 1y42_X Tyrosyl-tRNA synthetase 95.2 0.015 5E-07 65.4 5.1 75 538-615 231-320 (392)
49 2g36_A Tryptophanyl-tRNA synth 95.0 0.02 6.9E-07 63.1 5.7 73 538-616 152-230 (340)
50 2jan_A Tyrosyl-tRNA synthetase 95.0 0.018 6.3E-07 65.2 5.5 72 538-615 186-259 (432)
51 2ts1_A Tyrosyl-tRNA synthetase 95.0 0.013 4.6E-07 66.2 4.0 72 538-615 184-257 (419)
52 1h3f_A Tyrosyl-tRNA synthetase 94.8 0.033 1.1E-06 63.3 6.8 69 539-616 187-257 (432)
53 2pid_A Tyrosyl-tRNA synthetase 94.8 0.012 4.2E-07 65.2 3.2 72 538-615 209-281 (356)
54 3tzl_A Tryptophanyl-tRNA synth 94.7 0.013 4.6E-07 64.0 3.2 73 538-616 138-217 (322)
55 1n3l_A Tyrosyl-tRNA synthetase 94.1 0.029 1E-06 62.7 4.2 69 538-615 177-247 (372)
56 2el7_A Tryptophanyl-tRNA synth 93.4 0.042 1.4E-06 60.5 3.8 72 538-616 140-220 (337)
57 1yi8_B Tryptophanyl-tRNA synth 93.4 0.042 1.4E-06 60.8 3.7 72 538-615 161-239 (351)
58 2dlc_X Tyrosyl-tRNA synthetase 92.9 0.063 2.1E-06 60.5 4.3 69 538-615 181-252 (394)
59 4arc_A Leucine--tRNA ligase; l 92.9 0.1 3.4E-06 64.6 6.4 79 371-451 153-245 (880)
60 2zp1_A Tyrosyl-tRNA synthetase 92.8 0.065 2.2E-06 58.4 4.2 66 539-616 163-229 (314)
61 3vgj_A Tyrosyl-tRNA synthetase 92.1 0.097 3.3E-06 58.3 4.5 69 538-615 199-272 (373)
62 3viq_B Mating-type switching p 91.9 0.81 2.8E-05 39.0 8.7 61 890-955 6-66 (85)
63 2v0c_A Aminoacyl-tRNA syntheta 91.8 0.17 5.8E-06 62.9 6.7 78 371-451 133-225 (878)
64 3i05_A Tryptophanyl-tRNA synth 91.8 0.075 2.6E-06 59.6 3.2 66 540-614 225-293 (395)
65 2ip1_A Tryptophanyl-tRNA synth 91.5 0.11 3.7E-06 59.1 4.1 58 538-599 248-309 (432)
66 2cya_A Tyrosyl-tRNA synthetase 91.3 0.17 5.8E-06 56.3 5.3 70 538-616 176-264 (364)
67 1r6u_A Tryptophanyl-tRNA synth 90.8 0.18 6E-06 57.3 4.9 68 538-615 255-327 (437)
68 3jxe_A Tryptophanyl-tRNA synth 90.7 0.18 6.2E-06 56.4 4.8 67 540-615 208-278 (392)
69 3hv0_A Tryptophanyl-tRNA synth 90.5 0.16 5.3E-06 57.0 4.1 54 542-599 223-280 (393)
70 1i6k_A TRPRS, tryptophanyl-tRN 90.4 0.15 5.1E-06 55.9 3.8 72 538-615 136-219 (328)
71 3tze_A Tryptophanyl-tRNA synth 90.3 0.18 6.1E-06 56.7 4.3 57 539-599 243-303 (406)
72 2yy5_A Tryptophanyl-tRNA synth 90.1 0.15 5.3E-06 56.2 3.6 72 538-615 146-229 (348)
73 2j5b_A Tyrosyl-tRNA synthetase 90.0 0.22 7.4E-06 55.1 4.6 68 539-615 186-257 (348)
74 1r6t_A Tryptophanyl-tRNA synth 89.8 0.24 8.1E-06 57.0 4.9 57 538-599 302-363 (477)
75 3tzl_A Tryptophanyl-tRNA synth 89.4 0.098 3.4E-06 57.1 1.2 35 101-140 12-46 (322)
76 3hzr_A Tryptophanyl-tRNA synth 89.2 0.29 1E-05 54.6 4.9 67 540-615 225-294 (386)
77 3p0j_A Tyrosyl-tRNA synthetase 87.6 0.36 1.2E-05 58.0 4.6 58 538-599 182-244 (690)
78 2cyc_A Tyrosyl-tRNA synthetase 86.7 0.57 2E-05 52.2 5.3 68 538-615 179-276 (375)
79 1nzj_A Hypothetical protein YA 86.0 0.5 1.7E-05 50.9 4.2 51 541-594 186-236 (298)
80 2cyb_A Tyrosyl-tRNA synthetase 85.4 0.54 1.9E-05 51.4 4.2 42 90-136 31-72 (323)
81 3sz3_A Tryptophanyl-tRNA synth 83.7 0.26 9E-06 54.1 0.7 73 538-616 142-229 (341)
82 3hv0_A Tryptophanyl-tRNA synth 82.9 1.1 3.8E-05 50.1 5.4 60 74-137 49-117 (393)
83 3n9i_A Tryptophanyl-tRNA synth 82.6 0.67 2.3E-05 50.9 3.4 71 538-615 151-234 (346)
84 3foc_A Tryptophanyl-tRNA synth 82.4 0.69 2.4E-05 52.5 3.5 58 74-135 66-132 (451)
85 2cya_A Tyrosyl-tRNA synthetase 82.2 0.5 1.7E-05 52.5 2.2 40 91-135 35-74 (364)
86 3hzr_A Tryptophanyl-tRNA synth 81.9 1.2 4.1E-05 49.6 5.1 58 74-135 57-122 (386)
87 2dlc_X Tyrosyl-tRNA synthetase 81.6 1.4 4.8E-05 49.4 5.7 42 89-135 37-78 (394)
88 1i6k_A TRPRS, tryptophanyl-tRN 81.6 0.48 1.6E-05 51.8 1.8 31 101-135 10-40 (328)
89 2ke4_A CDC42-interacting prote 80.7 7.1 0.00024 34.4 8.6 65 890-955 13-90 (98)
90 3jxe_A Tryptophanyl-tRNA synth 78.9 1.5 5.1E-05 48.9 4.6 43 89-135 71-113 (392)
91 2el7_A Tryptophanyl-tRNA synth 78.0 1.2 4E-05 48.9 3.4 33 101-136 10-43 (337)
92 1go4_E MAD1 (mitotic arrest de 78.0 4 0.00014 36.0 6.0 67 889-955 16-96 (100)
93 2zp1_A Tyrosyl-tRNA synthetase 78.0 1 3.5E-05 48.9 2.9 43 90-137 27-69 (314)
94 3p0j_A Tyrosyl-tRNA synthetase 77.4 1.5 5E-05 52.8 4.2 46 90-141 39-85 (690)
95 3vgj_A Tyrosyl-tRNA synthetase 77.3 0.94 3.2E-05 50.4 2.4 44 91-140 56-100 (373)
96 3prh_A Tryptophanyl-tRNA synth 77.3 1.4 4.7E-05 49.2 3.7 74 538-616 170-254 (388)
97 3i05_A Tryptophanyl-tRNA synth 77.0 1.7 5.9E-05 48.5 4.4 61 74-138 53-122 (395)
98 3foc_A Tryptophanyl-tRNA synth 76.0 2.3 8E-05 48.1 5.1 54 542-599 290-347 (451)
99 3a04_A Tryptophanyl-tRNA synth 76.0 2 6.8E-05 47.7 4.6 56 75-135 46-109 (372)
100 1lrz_A FEMA, factor essential 75.5 4.3 0.00015 45.9 7.4 60 888-955 243-302 (426)
101 1r6t_A Tryptophanyl-tRNA synth 74.9 2.3 8E-05 48.7 4.9 59 74-136 130-197 (477)
102 1y42_X Tyrosyl-tRNA synthetase 74.4 1.8 6.3E-05 48.3 3.8 43 91-138 64-107 (392)
103 1n3l_A Tyrosyl-tRNA synthetase 73.7 1.6 5.4E-05 48.6 3.0 39 92-135 36-74 (372)
104 3tze_A Tryptophanyl-tRNA synth 73.6 1.8 6.1E-05 48.5 3.4 58 74-135 76-142 (406)
105 3a04_A Tryptophanyl-tRNA synth 73.1 1.3 4.6E-05 49.1 2.2 60 540-599 209-270 (372)
106 1yi8_B Tryptophanyl-tRNA synth 72.9 0.94 3.2E-05 50.0 0.9 30 101-135 31-61 (351)
107 2cyc_A Tyrosyl-tRNA synthetase 72.9 1.2 4.2E-05 49.5 1.8 73 100-193 41-114 (375)
108 2g36_A Tryptophanyl-tRNA synth 72.5 2.1 7.2E-05 46.9 3.6 32 101-135 21-52 (340)
109 2yy5_A Tryptophanyl-tRNA synth 71.9 1.1 3.7E-05 49.4 1.1 31 101-135 13-43 (348)
110 3prh_A Tryptophanyl-tRNA synth 71.4 0.98 3.3E-05 50.3 0.6 41 94-140 38-78 (388)
111 2k48_A Nucleoprotein; viral pr 71.0 13 0.00043 32.7 7.3 63 891-953 34-101 (107)
112 4dac_A Computationally designe 68.7 2.1 7.1E-05 27.0 1.4 23 889-911 5-27 (28)
113 2ic6_A Nucleocapsid protein; h 68.2 14 0.00047 30.9 6.6 61 893-953 6-71 (78)
114 2ip1_A Tryptophanyl-tRNA synth 67.4 2.9 9.8E-05 47.4 3.4 58 74-135 77-143 (432)
115 3sz3_A Tryptophanyl-tRNA synth 65.6 1.7 6E-05 47.5 1.1 31 101-135 15-45 (341)
116 4fi5_A Nucleoprotein; structur 65.0 14 0.00048 32.8 6.4 59 895-953 25-88 (113)
117 1r6u_A Tryptophanyl-tRNA synth 64.6 3.5 0.00012 46.6 3.4 59 74-136 83-150 (437)
118 2pms_C Pneumococcal surface pr 64.0 18 0.00063 33.0 7.3 61 894-954 8-81 (125)
119 3hnw_A Uncharacterized protein 63.9 11 0.00037 35.5 6.0 61 888-955 71-131 (138)
120 2ic9_A Nucleocapsid protein; h 62.0 18 0.00062 31.3 6.4 60 894-953 7-71 (96)
121 3hnw_A Uncharacterized protein 61.5 16 0.00054 34.3 6.7 25 889-913 65-89 (138)
122 2pid_A Tyrosyl-tRNA synthetase 60.2 3.4 0.00012 45.5 2.2 42 92-138 47-89 (356)
123 1jil_A Tyrrs, tyrosyl-tRNA syn 60.1 4.4 0.00015 45.7 3.1 96 71-188 5-110 (420)
124 2jan_A Tyrosyl-tRNA synthetase 59.3 4.3 0.00015 45.8 2.8 41 91-136 32-73 (432)
125 3n9i_A Tryptophanyl-tRNA synth 55.8 3 0.0001 45.7 0.7 31 100-135 23-54 (346)
126 1h3f_A Tyrosyl-tRNA synthetase 55.6 5.5 0.00019 45.0 2.9 44 90-138 36-80 (432)
127 2yxn_A Tyrosyl-tRNA synthetase 54.4 5.1 0.00017 43.5 2.3 39 92-135 34-73 (322)
128 2ts1_A Tyrosyl-tRNA synthetase 54.2 6.3 0.00021 44.4 3.0 43 91-138 30-73 (419)
129 3lof_A Heat shock 70 kDa prote 54.1 63 0.0021 28.8 9.3 59 898-956 8-74 (113)
130 2pms_C Pneumococcal surface pr 53.7 57 0.0019 29.8 8.6 59 894-952 63-121 (125)
131 2zdi_C Prefoldin subunit alpha 53.6 1.4E+02 0.0049 28.0 12.3 46 868-913 70-119 (151)
132 2j5b_A Tyrosyl-tRNA synthetase 52.9 6.4 0.00022 43.2 2.8 43 90-136 39-81 (348)
133 2lq4_p Lysophosphatidic acid r 51.1 0.55 1.9E-05 36.7 -4.2 63 893-955 14-76 (80)
134 4gri_A Glutamate--tRNA ligase; 51.0 26 0.0009 40.4 7.7 87 541-631 231-321 (512)
135 3u1c_A Tropomyosin alpha-1 cha 51.0 58 0.002 28.6 8.2 58 890-954 42-99 (101)
136 2zqm_A Prefoldin beta subunit 50.2 44 0.0015 29.9 7.7 27 888-914 66-92 (117)
137 3vem_A Helicase protein MOM1; 49.6 29 0.001 31.0 5.9 78 879-959 27-104 (115)
138 1vcs_A Vesicle transport throu 47.8 64 0.0022 28.4 8.0 60 889-954 35-94 (102)
139 2eqb_B RAB guanine nucleotide 46.5 1E+02 0.0034 26.9 8.6 53 889-955 9-61 (97)
140 2l5g_B Putative uncharacterize 45.2 30 0.001 25.1 4.2 20 892-911 16-35 (42)
141 2dfs_A Myosin-5A; myosin-V, in 44.6 48 0.0017 41.9 9.2 26 930-955 1019-1044(1080)
142 3efg_A Protein SLYX homolog; x 43.4 48 0.0017 27.7 6.1 53 889-955 11-63 (78)
143 1l8d_A DNA double-strand break 43.2 99 0.0034 27.4 8.8 29 927-955 64-92 (112)
144 2ocy_A RAB guanine nucleotide 42.7 39 0.0013 32.1 6.0 60 898-957 78-145 (154)
145 2wy7_Q SBI, IGG-binding protei 42.6 53 0.0018 25.8 5.6 56 888-943 12-73 (80)
146 2ke4_A CDC42-interacting prote 42.1 45 0.0015 29.3 5.9 59 898-956 14-84 (98)
147 1fxk_C Protein (prefoldin); ar 41.8 2E+02 0.007 26.1 11.9 65 869-947 61-129 (133)
148 1gmj_A ATPase inhibitor; coile 41.0 1.4E+02 0.0048 25.2 8.4 30 926-955 50-79 (84)
149 2p32_A Heat shock 70 kDa prote 40.7 89 0.003 28.2 8.1 55 901-955 20-82 (120)
150 4etp_A Kinesin-like protein KA 40.3 63 0.0022 36.0 8.4 57 889-959 7-63 (403)
151 1ses_A Seryl-tRNA synthetase; 39.2 66 0.0023 36.0 8.4 63 887-955 30-92 (421)
152 4abm_A Charged multivesicular 38.3 1.7E+02 0.0058 24.5 8.7 65 890-957 11-75 (79)
153 1ud0_A HSC70, 70 kDa heat-shoc 38.1 59 0.002 28.9 6.4 43 901-943 6-48 (113)
154 4dzn_A Coiled-coil peptide CC- 38.0 50 0.0017 21.6 4.0 24 890-913 7-30 (33)
155 1g6u_A Domain swapped dimer; d 37.8 37 0.0013 24.1 3.6 40 902-956 3-42 (48)
156 3u06_A Protein claret segregat 36.9 73 0.0025 35.6 8.2 56 890-959 8-63 (412)
157 2qyw_A Vesicle transport throu 36.8 1.5E+02 0.005 26.1 8.6 55 890-950 47-101 (102)
158 3qh9_A Liprin-beta-2; coiled-c 36.6 1E+02 0.0036 25.7 6.8 31 889-919 23-53 (81)
159 2v71_A Nuclear distribution pr 36.3 1.2E+02 0.0042 29.8 8.6 24 890-913 47-70 (189)
160 2l5g_B Putative uncharacterize 36.0 39 0.0013 24.5 3.7 26 890-915 7-32 (42)
161 1fxk_A Prefoldin; archaeal pro 35.9 87 0.003 27.4 7.1 27 888-914 61-87 (107)
162 3onj_A T-snare VTI1; helix, HA 35.7 86 0.0029 27.3 6.8 56 893-954 35-93 (97)
163 2lf0_A Uncharacterized protein 35.5 69 0.0023 28.7 6.0 50 890-948 8-57 (123)
164 2lw1_A ABC transporter ATP-bin 35.5 24 0.00082 30.3 3.1 57 896-953 19-75 (89)
165 3u59_A Tropomyosin beta chain; 34.3 1.3E+02 0.0043 26.4 7.7 57 890-953 42-98 (101)
166 3ljm_A Coil Ser L9C; de novo d 34.1 74 0.0025 20.6 4.3 20 934-953 8-27 (31)
167 3mq7_A Bone marrow stromal ant 33.4 1.4E+02 0.0048 26.7 7.5 28 889-916 61-88 (121)
168 3ol1_A Vimentin; structural ge 31.1 92 0.0031 28.2 6.4 19 937-955 86-104 (119)
169 3iox_A AGI/II, PA; alpha helix 30.3 1.1E+02 0.0038 34.5 8.0 27 929-955 82-108 (497)
170 1lwu_C Fibrinogen gamma chain; 30.3 68 0.0023 34.5 6.3 23 933-955 32-54 (323)
171 3mxz_A Tubulin-specific chaper 29.8 2.1E+02 0.0072 25.8 8.4 62 893-956 16-82 (116)
172 1h7c_A Tubulin-specific chaper 29.8 1.2E+02 0.0041 27.0 6.8 64 892-957 14-82 (108)
173 4adz_A CSOR; transcription, co 29.2 1.3E+02 0.0045 27.8 7.0 31 891-921 48-78 (136)
174 4gqc_A Thiol peroxidase, perox 28.8 1.2E+02 0.0041 28.6 7.4 30 215-244 28-58 (164)
175 2fxo_A Myosin heavy chain, car 28.6 1.2E+02 0.0041 27.9 6.9 59 894-952 36-94 (129)
176 4gkw_A Spindle assembly abnorm 28.5 1.3E+02 0.0045 27.2 6.7 61 890-954 58-118 (167)
177 2l5g_A GPS2 protein, G protein 28.2 85 0.0029 22.1 4.1 24 932-955 6-29 (38)
178 3aai_A Copper homeostasis oper 28.1 1.7E+02 0.0057 25.3 7.2 31 891-921 10-41 (94)
179 1qsd_A Protein (beta-tubulin b 27.8 1.9E+02 0.0066 25.6 7.7 64 892-957 11-80 (106)
180 3ljm_A Coil Ser L9C; de novo d 27.6 59 0.002 21.0 3.0 21 895-915 4-24 (31)
181 3t98_B Nucleoporin NUP58/NUP45 27.6 3E+02 0.01 23.7 9.2 66 890-955 10-79 (93)
182 2dq0_A Seryl-tRNA synthetase; 27.6 51 0.0017 37.4 5.0 29 888-916 34-62 (455)
183 2djv_A Methionyl-tRNA syntheta 27.5 2.7E+02 0.0092 23.2 8.3 52 889-948 10-61 (79)
184 1ic2_A Tropomyosin alpha chain 27.5 1.7E+02 0.0058 24.4 7.0 27 928-954 42-68 (81)
185 3d5a_X RF1, peptide chain rele 27.1 90 0.0031 33.9 6.5 26 925-950 67-92 (354)
186 3he4_A Synzip6; heterodimeric 27.1 61 0.0021 23.7 3.4 26 890-915 22-47 (56)
187 3nmd_A CGMP dependent protein 27.1 2.6E+02 0.0089 22.9 7.6 31 926-956 39-69 (72)
188 3oja_B Anopheles plasmodium-re 26.8 1.3E+02 0.0046 34.9 8.8 28 928-955 552-579 (597)
189 3na7_A HP0958; flagellar bioge 26.8 1.3E+02 0.0045 31.0 7.7 29 889-917 57-85 (256)
190 3etw_A Adhesin A; antiparallel 26.5 2.1E+02 0.007 26.0 7.7 61 895-956 44-104 (119)
191 3tnu_B Keratin, type II cytosk 25.9 1.8E+02 0.0062 26.5 7.6 22 891-912 35-56 (129)
192 1g6u_A Domain swapped dimer; d 25.9 1.8E+02 0.0061 20.6 7.1 23 893-915 21-43 (48)
193 3iv1_A Tumor susceptibility ge 25.7 2.1E+02 0.0072 23.9 6.9 64 891-955 10-74 (78)
194 3a7p_A Autophagy protein 16; c 25.6 1.1E+02 0.0037 28.9 5.9 58 891-955 67-124 (152)
195 2hh7_A Hypothetical protein CS 24.9 1.7E+02 0.0058 26.5 6.9 30 892-921 7-36 (119)
196 3he4_A Synzip6; heterodimeric 24.9 1E+02 0.0036 22.5 4.3 25 890-914 29-53 (56)
197 3etv_A Protein transport prote 24.7 45 0.0015 35.8 3.5 32 884-915 8-39 (355)
198 2lw9_A Unconventionnal myosin- 24.6 1E+02 0.0034 23.1 4.2 27 892-918 6-32 (51)
199 4dci_A Uncharacterized protein 24.3 2.5E+02 0.0086 26.5 8.2 63 891-956 35-106 (150)
200 4etp_B Spindle POLE BODY-assoc 24.1 1.1E+02 0.0039 32.5 6.3 54 890-957 8-61 (333)
201 3swf_A CGMP-gated cation chann 24.0 2.7E+02 0.0093 22.9 7.2 49 887-945 2-50 (74)
202 1lwu_C Fibrinogen gamma chain; 23.9 1.5E+02 0.0051 31.9 7.4 47 890-950 10-56 (323)
203 2akf_A Coronin-1A; coiled coil 23.9 1.2E+02 0.0041 20.0 4.0 24 890-913 4-27 (32)
204 3twe_A Alpha4H; unknown functi 23.9 1E+02 0.0036 19.3 3.5 20 897-916 6-25 (27)
205 2yy0_A C-MYC-binding protein; 23.8 1.1E+02 0.0036 23.6 4.5 31 927-957 19-49 (53)
206 2yy0_A C-MYC-binding protein; 23.7 1E+02 0.0035 23.7 4.4 28 890-917 24-51 (53)
207 3gp4_A Transcriptional regulat 23.6 87 0.003 29.2 5.0 35 923-957 77-111 (142)
208 2efr_A General control protein 23.6 1.1E+02 0.0038 29.1 5.7 59 896-954 95-153 (155)
209 3swk_A Vimentin; cytoskeleton, 23.5 1.4E+02 0.0047 25.4 5.7 66 890-955 12-84 (86)
210 2xzr_A Immunoglobulin-binding 23.4 2.1E+02 0.0073 24.5 6.6 60 893-959 42-108 (114)
211 2zqm_A Prefoldin beta subunit 23.1 2.8E+02 0.0094 24.4 8.2 36 920-955 63-98 (117)
212 1bb1_B Designed, thermostable 23.0 1.4E+02 0.0049 19.9 4.3 29 929-957 4-32 (36)
213 1t3j_A Mitofusin 1; coiled coi 22.6 2E+02 0.0069 25.0 6.5 18 890-907 52-69 (96)
214 2avr_X Adhesion A; antiparalle 22.5 3.1E+02 0.011 24.8 7.9 55 901-956 50-104 (119)
215 1u00_A HSC66, chaperone protei 22.4 2.3E+02 0.0078 28.6 8.3 52 903-956 147-203 (227)
216 3qne_A Seryl-tRNA synthetase, 22.4 60 0.0021 37.0 4.2 28 888-915 36-63 (485)
217 2eqb_B RAB guanine nucleotide 22.3 2.5E+02 0.0086 24.4 7.1 50 897-952 45-94 (97)
218 2f1m_A Acriflavine resistance 22.2 2.7E+02 0.0094 28.5 9.3 55 897-955 72-126 (277)
219 1q06_A Transcriptional regulat 22.1 1.1E+02 0.0037 28.3 5.3 58 900-957 52-109 (135)
220 1x79_B RAB GTPase binding effe 21.5 4.3E+02 0.015 23.6 8.7 56 890-955 11-66 (112)
221 2ic9_A Nucleocapsid protein; h 21.0 2.3E+02 0.008 24.4 6.5 66 885-950 5-75 (96)
222 3sja_C Golgi to ER traffic pro 21.0 61 0.0021 26.1 2.7 25 895-919 35-59 (65)
223 2gd5_A Charged multivesicular 21.0 1.8E+02 0.0061 28.2 6.9 67 890-957 26-94 (179)
224 2ic6_A Nucleocapsid protein; h 20.8 2.1E+02 0.0072 23.8 6.0 63 886-948 6-73 (78)
225 1r8e_A Multidrug-efflux transp 20.5 1.1E+02 0.0039 31.5 5.8 55 897-957 55-109 (278)
226 1i6z_A BAG-family molecular ch 20.3 3.9E+02 0.013 24.7 8.3 60 889-956 25-85 (135)
227 3ol1_A Vimentin; structural ge 20.2 3.2E+02 0.011 24.6 7.9 25 891-915 19-43 (119)
228 4fi5_A Nucleoprotein; structur 20.0 2.6E+02 0.0088 24.9 6.7 65 889-953 26-95 (113)
No 1
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=100.00 E-value=5.5e-194 Score=1775.41 Aligned_cols=854 Identities=43% Similarity=0.768 Sum_probs=792.1
Q ss_pred CCCCCCCh-hhHHHHHHHHHhCCCCCCCCCCCCCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCC
Q 002136 58 TLPKTFDF-TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGT 136 (961)
Q Consensus 58 ~~~~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~ 136 (961)
+|++.||| ++|++||++|++ ++|++..+.++++|+|++|||||||.||||||+|+|++|+++||+||+||+|+|++||
T Consensus 2 ~~~~~y~~~~~E~~~~~~W~~-~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~ 80 (862)
T 1gax_A 2 DLPKAYDPKSVEPKWAEKWAK-NPFVANPKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGT 80 (862)
T ss_dssp CCCSSCCGGGTHHHHHHHHHH-SCCCCCTTCCSCEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEE
T ss_pred CCccCCChHHHHHHHHHHHHh-CCCccCcCCCCCcEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCcccccccc
Confidence 58899999 899999999999 9999987667889999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHH
Q 002136 137 DHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRL 216 (961)
Q Consensus 137 D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L 216 (961)
||||+|||.+|++.+.+.|++++++||++|++.||+|++++++.|++||++||+|+||+|+|+|||+.|+++|+++|.+|
T Consensus 81 D~~Glp~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~~~~~v~~~F~~L 160 (862)
T 1gax_A 81 DHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRY 160 (862)
T ss_dssp BCCTHHHHHHHHTTTTTTTSCCSCCCTTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHcCCChHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999998888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCceEEcCeeeecCCCCCccccccccccccCCCeEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCchhhhhc
Q 002136 217 HEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFI 296 (961)
Q Consensus 217 ~~~GlIy~~~~~v~w~p~~~t~lsd~Ev~~~e~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~y~~l~ 296 (961)
|++|||||+.++|+|||.|+|+|||+||+|++..|.++||+|++.++ .+|+|||||||||+||+||||||+|+||++|+
T Consensus 161 ~~kGliYrg~~~v~wcp~~~T~Lsd~EV~~~e~~g~~~~v~f~~~~~-~~l~v~TTrPeTl~g~~avav~P~~~ry~~l~ 239 (862)
T 1gax_A 161 YHEGLAYRAPRLVNWCPRCETTLSDLEVETEPTPGKLYTLRYEVEGG-GFIEIATVRPETVFADQAIAVHPEDERYRHLL 239 (862)
T ss_dssp HTTSSEEEECCEEEEETTTTEEECGGGEEECCEEEEEEEEECCCSSS-CCCEEEESCSGGGTTCCCEEECSSCCTTCSCT
T ss_pred HHCCCEEecccccccCCCcCccccccccccccccceEEEEEEEecCC-CEEEEEeCCccccccceEEEECCCccHHHHHc
Confidence 99999999999999999999999999999999999999999999876 79999999999999999999999999999999
Q ss_pred cCeeeccCCCCCeeeeeecCccccCCCcceeEeCCCCChhHHHHHHHhCCCceeecCCCCcccccc--cccCCCchHHHH
Q 002136 297 GMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVA--GLFRGLDRFEAR 374 (961)
Q Consensus 297 g~~~~~P~~~~~~ipii~~~~V~~~~GTG~v~~~Pah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~--g~~~G~~~~~ar 374 (961)
|+++.+|+ .++.+||++|+||++++|||+||+|||||++||++|++||||+++++|++|+++++| |.|.||++++||
T Consensus 240 G~~~~~P~-~~~~ipii~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~g~~~Gl~~~~a~ 318 (862)
T 1gax_A 240 GKRARIPL-TEVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLDRFEAR 318 (862)
T ss_dssp TCCCBCTT-CCCBCCEEECTTCCTTSSSSEEECCGGGCHHHHHHHHHTTCCCCCSBCTTSBBCSSSSCTTTSSSBSSHHH
T ss_pred CCEEECCC-CCCeeeEEeccccccCCCCcceEecCCCCchHHHHHHHcCCCccceeCCCCccccccCCcccCCcCHHHHH
Confidence 99999999 589999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHcCCccccccccccCCcccCCCCceeeeeccceeeeccHHHHHHHHHHHcCCceeechhHHHHHHHHHhcCC
Q 002136 375 KKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIK 454 (961)
Q Consensus 375 ~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~~l~ 454 (961)
++|+++|++.|++.+.+++.|++|+|||||++|++++++||||+++++++++++++++++++|+|+++++++.+||++++
T Consensus 319 ~~iv~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~qWFv~~~~~~~~~l~~v~~~~~~~~P~~~~~~~~~wl~~l~ 398 (862)
T 1gax_A 319 RKAVELFREAGHLVKEEDYTIALATCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVK 398 (862)
T ss_dssp HHHHHHHHTTTCEEEEEEEEECCEEETTTCSBCCEEECCEEEECHHHHHHHHHHHHHHTCCEESSSHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhCCCeeeeccccccCCeecCCCCeEEEEecceEEEEhHHHHHHHHHHHHcCCceEcCHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999989999999999999999999999
Q ss_pred CceeeeccCCCcccceEEEcCCcccEEEecChHHHHHH--HHhhcCCCcccccCCCceeeeecCCCccccccCCCCCChh
Q 002136 455 DWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEK--AHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSAD 532 (961)
Q Consensus 455 DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~dvldtWf~S~l~~~~~~~~p~~~~~ 532 (961)
|||||||||||||||+|+|++ ++...+.. .+++... ....||. ..++|++|||||||||++||++++|||.++ +
T Consensus 399 DW~ISRqr~WG~pIP~w~~~~-~~~i~v~~-~~~l~~~~~~~~~~g~-~~~~r~~DvlDtWfdS~~~~~~~~~~p~~~-~ 474 (862)
T 1gax_A 399 DWNISRQLWWGHQIPAWYCED-CQAVNVPR-PERYLEDPTSCEACGS-PRLKRDEDVFDTWFSSALWPLSTLGWPEET-E 474 (862)
T ss_dssp CCCCBCCCSSSCCCCCEEETT-TCCEECCC-GGGTTCCCCSCTTTCC-SCEEECCCCBCHHHHHTSCTTGGGTTTSCC-H
T ss_pred ceeEecccCCCcccCceecCC-CCEEEEec-cccccccchhhhhcCc-hheecCCcccceeeccCCcchhhccCCCch-H
Confidence 999999999999999999964 34444443 1110000 1123443 268999999999999999999999999776 7
Q ss_pred HHhhcCCcceEeeeccccccHHHHHHHHHhHhcCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHH
Q 002136 533 DFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFT 612 (961)
Q Consensus 533 ~~~~~~P~d~~~~G~Dil~fw~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~ 612 (961)
+|++|||+|++++|+||+|||+++|+++++.+.|+.||++|++||+|+|.+|+|||||+||+|+|.++|++||+|++|||
T Consensus 475 ~~~~~~P~d~~v~G~Dii~~W~a~~~~~~~~~~g~~Pfk~v~~hG~vld~~G~KMSKSlGNvIdP~dli~~yGaDalR~~ 554 (862)
T 1gax_A 475 DLKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFA 554 (862)
T ss_dssp HHHHSCSBSCEEEEGGGTTTTHHHHHHHHHHHSSSCSBSEEEEECCEECTTSCBCCTTTTCCCCHHHHHHHHCHHHHHHH
T ss_pred HHHhhCCceEEecCccccccHHHHHHHHHHHhcCCCcccEEEEeeeEEcCCCCCccccCCCCCCHHHHHHHcChHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCC-CCccccCHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHH
Q 002136 613 ISLGTA-GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLI 691 (961)
Q Consensus 613 L~~~~~-~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~ 691 (961)
|++.++ ++|++|+++.+++.++|+|++||++||+.+++.++.+. ...++..|+||+++++.++
T Consensus 555 ll~~~~~~~D~~fs~~~l~~~~~f~nkl~N~~rf~~~~~~~~~~~----------------~~~~~~~D~~il~~l~~~~ 618 (862)
T 1gax_A 555 LIYLATGGQDIRLDLRWLEMARNFANKLYNAARFVLLSREGFQAK----------------EDTPTLADRFMRSRLSRGV 618 (862)
T ss_dssp HHHHCCTTCCEECCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCC----------------BCCCCHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHhcccCCCCc----------------cccCCHHHHHHHHHHHHHH
Confidence 998766 99999999999999999999999999999887543210 0235678999999999999
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHhhhHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Q 002136 692 DTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQS 771 (961)
Q Consensus 692 ~~v~~a~e~~~f~~A~~~i~~f~~~~~~n~Yle~~K~~l~~~~~~~~~~~~~~~l~~vl~~~l~LL~Pf~P~itEeiw~~ 771 (961)
++++++|++|+|+.|++.+++|+|+++||||++.+|+|++++ +++++.+++++|+.+++||||||||+|||||+.
T Consensus 619 ~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Yie~~k~~l~~~-----~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~ 693 (862)
T 1gax_A 619 EEITALYEALDLAQAAREVYELVWSEFCDWYLEAAKPALKAG-----NAHTLRTLEEVLAVLLKLLHPMMPFLTSELYQA 693 (862)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTTHHHHHHHHHHTT-----BHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHhhHHHHHHcchhhhcc-----HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Confidence 999999999999999999999999999999999999998753 356788999999999999999999999999999
Q ss_pred hcCCCCceeecCCCCCCCCCChHHHHHHHHHHHHHHHHHhhhhhcccCCCceeeEEEEcCHHHHHHHHhHHHHHHHHcCC
Q 002136 772 LRKRKEALIVSPWPQTSLPRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISASIVANEEVIQYISKEKEVLALLSRL 851 (961)
Q Consensus 772 L~~~~~si~~~~wP~~~~~~d~~~~~~~~~~~~~v~~ir~~r~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~i~~l~~~ 851 (961)
|+. ++||+.++||+.+ ..|+.+++.++.++++++++|++|++++|++++++.+++. + +. +.++....+|+.++++
T Consensus 694 L~~-~~sv~~~~wP~~~-~~d~~~~~~~~~~~~v~~~~r~~r~~~~i~~~~~~~~~v~-~-~~-~~~~~~~~~i~~~~~~ 768 (862)
T 1gax_A 694 LTG-KEELALEAWPEPG-GRDEEAERAFEALKQAVTAVRALKAEAGLPPAQEVRVYLE-G-ET-APVEENLEVFRFLSRA 768 (862)
T ss_dssp HHC-CSCGGGSCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCCEEEEEE-E-SC-HHHHHTHHHHHHHHCE
T ss_pred cCC-CCeEEecCCCCCC-cCCHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCeeEEEEe-C-hH-HHHHHHHHHHHHHhCc
Confidence 985 4699999999987 4688999999999999999999999999999999987765 2 33 5667777889999876
Q ss_pred ccccEEeecCCCCCCCCcEEEEecCCeEEEecCCCccChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHH
Q 002136 852 DLLNVHFTESPPGDANQSVHLVASEGLEAYLPLADMVDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRG 931 (961)
Q Consensus 852 ~~~~v~~~~~~~~~~~~~v~~~v~~~~~~~~~l~~~id~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~ 931 (961)
.. + . +.|.+++..+ .++.++++++.|.+|+++|++||+|++++++++++++++||+||+|++|||++||++
T Consensus 769 ~~--~---~---~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~rl~k~~~~~~~~~~~~~~~l~~~~f~~~ap~~~~~~ 839 (862)
T 1gax_A 769 DL--L---P---ERPAKALVKA-MPRVTARMPLEGLLDVEEWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEA 839 (862)
T ss_dssp EE--C---S---SCCSSEEEEE-CSSEEEEEECCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTSSSSCTTHHHH
T ss_pred cc--c---c---cccccceEEe-cCCcEEEEEeccccCHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhCCHHHHHH
Confidence 43 2 1 1356777754 478999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002136 932 VQEKAAEAEEKINLTKNRLAFL 953 (961)
Q Consensus 932 ~~~kl~~~~~~l~~~~~~l~~l 953 (961)
+|+|++++++++++++++|+.|
T Consensus 840 ~~~~~~~~~~~~~~~~~~~~~~ 861 (862)
T 1gax_A 840 EEARLKENLEQAERIREALSQI 861 (862)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999876
No 2
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=100.00 E-value=6.9e-162 Score=1502.84 Aligned_cols=770 Identities=25% Similarity=0.439 Sum_probs=683.2
Q ss_pred CCCCCCh-hhHHHHHHHHHhCCCCCCCC--CCCCCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCC
Q 002136 59 LPKTFDF-TSEERIYNWWESQGYFKPNF--ERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (961)
Q Consensus 59 ~~~~~~~-~~E~~~~~~W~~~~~f~~~~--~~~~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G 135 (961)
+|++|++ ++|++||++|+++++|++.. +.++++|+|++|||||||.||||||+|+|++|+++||+||+||+|+|+||
T Consensus 14 fpm~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~G 93 (917)
T 1ffy_A 14 FPMRGGLPNKEPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPG 93 (917)
T ss_dssp CCSSCCHHHHHHHHHHHHHHTTHHHHHHHHTTTSCBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCE
T ss_pred CCCCCChHHHhHHHHHHHHHCCCcccchhhccCCCceeeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCccc
Confidence 5567898 89999999999999999754 34678999999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHH
Q 002136 136 TDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIR 215 (961)
Q Consensus 136 ~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~ 215 (961)
|||||+|||.++++. |+++.++++++|++.|++|+.++++.|++||++||+++||+|+|+||||.|.++|+++|.+
T Consensus 94 wD~hGlpiE~~a~k~----G~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~rlG~~~Dwd~~~~T~d~~~~~~v~~~F~~ 169 (917)
T 1ffy_A 94 WDTHGLPIEQALTKK----GVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGE 169 (917)
T ss_dssp EBCCSHHHHHHHHHH----TCCSTTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHc----CCCchhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEccCCCeEcCCHHHHHHHHHHHHH
Confidence 999999999998864 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCceEEcCeeeecCCCCCccccccccccccCCCeEEEEEEEecCC------CeeEEEEecCCCccCCCcEEEECCC-
Q 002136 216 LHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGR------SDFLTIATTRPETLFGDVALAVNPQ- 288 (961)
Q Consensus 216 L~~~GlIy~~~~~v~w~p~~~t~lsd~Ev~~~e~~~~~~~~~~~~~~~------~~~l~v~TtrPeTl~g~~av~v~P~- 288 (961)
|+++|+|||+.++|+|||.|+|+|||+||+|++..++++||+|++.++ +.+++|||||||||+||+||||||+
T Consensus 170 l~~kGliYr~~~~v~wcp~~~T~Lae~eVey~d~~~~~~~v~f~~~~~~g~~~~~~~~~i~TTrP~Tl~~~~av~v~p~~ 249 (917)
T 1ffy_A 170 MADKGLIYKGKKPVYWSPSSESSLAEAEIEYHDKRSASIYVAFNVKDDKGVVDADAKFIIWTTTPWTIPSNVAITVHPEL 249 (917)
T ss_dssp HHHTTCEEEEEEEEEEETTTTEECCGGGEEEEEEEEEEEECCBCCCSSTTGGGTTCCBCCEESCGGGSSCCBCCCCCTTC
T ss_pred HHHcCCeEecccceeccCCCCcCcchhhhhcccccCceEEEEEEecccccccCCCCeEEEEeCCcchhhhceEEEECCCC
Confidence 999999999999999999999999999999999999999999999763 5799999999999999999999998
Q ss_pred --------Cc-------------------hhh----------hhccCeeeccCCCCCeeeeeecCccccCCCcceeEeCC
Q 002136 289 --------DE-------------------HYS----------QFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISP 331 (961)
Q Consensus 289 --------~~-------------------~y~----------~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~v~~~P 331 (961)
++ +|+ +|+|+++.||| .++.+||+.++||++++|||+||+||
T Consensus 250 ~Y~~v~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~-~~~~~pvi~~~~V~~~~GTG~V~~~P 328 (917)
T 1ffy_A 250 KYGQYNVNGEKYIIAEALSDAVAEALDWDKASIKLEKEYTGKELEWVVAQHPF-LDRESLVINGDHVTTDAGTGCVHTAP 328 (917)
T ss_dssp CCCCCCTTTTCCCCCHHHHHHHHTTTTCCSSCCCCCCCCCTTTCTTCCCBCCT-TCCSBCCCCCCSSCCSSSCSCCCBCT
T ss_pred ceEEEEeCCceeehHHHHHHHHHHhcCcccceeeeeeeeecccccCCEEECCC-CCCeeeEEeccccccCCCCceeEeCC
Confidence 43 454 69999999999 58999999999999999999999999
Q ss_pred CCChhHHHHHHHhCCCceeecCCCCcccccccccCCCchHHHHHHHHHHHHHcCCccccccccccCCcccCCCCceeeee
Q 002136 332 GHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLV 411 (961)
Q Consensus 332 ah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~ 411 (961)
|||++||++|++||||+++++|++|.+++++|.|+||++++||++|++.|++.|++++.+++.|++|+|||||+|+++++
T Consensus 329 ah~~~D~~~~~~~~L~~~~~vd~~G~~~~~~~~~~G~~v~~A~~~Ii~~L~~~g~l~~~~~~~hs~p~c~R~~~pv~~r~ 408 (917)
T 1ffy_A 329 GHGEDDYIVGQQYELPVISPIDDKGVFTEEGGQFEGMFYDKANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRA 408 (917)
T ss_dssp TSCSHHHHTTTSSSCCCCCCCCSSSCCCTTCSSCSSSCSSHHHHTTGGGSSHHHHCCCCEEEEEEEEEETTTCCBCEEEE
T ss_pred CCCHHHHHHHHHcCCCeeeeECCCceeCCcccccCCcCHHHHHHHHHHHHHhCCCccccccccccCCEecCCCCEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeeccHHHHHHHHHHHcCCceeechhHHHHHHHHHhcCCCceeeeccCCCcccceEEEcCCcccEEEecCh----H
Q 002136 412 SKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNA----D 487 (961)
Q Consensus 412 ~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~----~ 487 (961)
++|||++|++++++++++++ +++|+|++.++++.+||++++||||||||+||+|||+|+|+. +..++..+. .
T Consensus 409 t~QWFi~~~~lr~~~l~~i~--~~~~~P~~~~~r~~~~l~~~~DW~ISRqr~WG~PIP~~~~~~--g~~~~~~~~~~~i~ 484 (917)
T 1ffy_A 409 TPQWFASISKVRQDILDAIE--NTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPVFYAEN--GEIIMTKETVNHVA 484 (917)
T ss_dssp EEEEEECHHHHHHHHHHHHH--TSEESSHHHHHHHHHHHHHCCCEECEESCSSSCBCCCEECTT--SCEECCHHHHHHHH
T ss_pred ccceEeeHHHHHHHHHHHHh--cCcccCHHHHHHHHHHHhcCccceeeccCCcCcccceeeCCC--CCEecCHHHHHHHH
Confidence 99999999999999999997 589999999999999999999999999999999999999853 333222110 0
Q ss_pred HHHHH--------------HHh-----hcCCCcccccCCCceeeeecCCCccccccCCCCCChhHHhhcCCcceEeeecc
Q 002136 488 EALEK--------------AHQ-----KYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHD 548 (961)
Q Consensus 488 ~~~~~--------------~~~-----~~~~~~~~~~~~dvldtWf~S~l~~~~~~~~p~~~~~~~~~~~P~d~~~~G~D 548 (961)
+.... ..+ +|| ...+.|++||||||||||+++++.+++.. ++ .||+|++++|+|
T Consensus 485 ~~~~~~g~~~W~~~~~~~~~~~~~~~~~~g-~~~~~~~~D~lD~WfdSg~~~~~~l~~~~----~~--~~P~Dl~~~G~D 557 (917)
T 1ffy_A 485 DLFAEHGSNIWFEREAKDLLPEGFTHPGSP-NGTFTKETDIMDVWFDSGSSHRGVLETRP----EL--SFPADMYLEGSD 557 (917)
T ss_dssp HHHHHHCTHHHHHSCHHHHSSTTCCCSSCT-TSCCEECCCEECHHHHHHTHHHHTTTTST----TC--CSSBSEEEEEGG
T ss_pred HHhhhcCCcccccCCHHHhcccccccccCC-cccccccCCCcCeecCCCCCHHHHcCCch----hc--CCCceEEEEEec
Confidence 00000 000 111 23588999999999999999998887642 23 399999999999
Q ss_pred ccccHHHHHHHHHhHhcCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHhCCCCCccccCHHH
Q 002136 549 ILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIER 628 (961)
Q Consensus 549 il~fw~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~~~~~D~~f~~~~ 628 (961)
|+|||+.++++.+.++.|..||++|++||||+|.+|+|||||+||+|+|.++|++||+|++||||+++++++|++|+++.
T Consensus 558 ~~r~wf~~~l~~s~~~~g~~Pfk~v~~hG~V~d~~G~KMSKSlGNvV~P~dvi~~yGaDalR~~lls~~~~~D~~fs~~~ 637 (917)
T 1ffy_A 558 QYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVKQKGADIARLWVSSTDYLADVRISDEI 637 (917)
T ss_dssp GGTTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSCCCCSSSSCCCCHHHHHHHTCHHHHHHHHHTSCTTSCEECCHHH
T ss_pred ccccHHHHHHHHHHHhhCCCcccceeEeeeEEcCCCcCcccccCCcCChHHHHHhCCHHHHHHHHhccCCCCCcccCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999995559999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhhhcCChHHHHH
Q 002136 629 LTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGR 708 (961)
Q Consensus 629 ~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~ 708 (961)
+++.++++++|||+++|+++++.++.+... ......++..|+|++++++.++++++++|++|+|+.|++
T Consensus 638 l~~~~~~~~kl~n~~r~~l~nl~~~~~~~~-----------~v~~~~l~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~ 706 (917)
T 1ffy_A 638 LKQTSDDYRKIRNTLRFMLGNINDFNPDTD-----------SIPESELLEVDRYLLNRLREFTASTINNYENFDYLNIYQ 706 (917)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTCCHHHH-----------CCCGGGSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCcccc-----------cCCccccCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 999999999999999999998865432000 001123567899999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHhhhhhccCC-ChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhcC-CCCceeecCCCC
Q 002136 709 ETYDFFWSDFADWYIEASKARLYRSE-YDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRK-RKEALIVSPWPQ 786 (961)
Q Consensus 709 ~i~~f~~~~~~n~Yle~~K~~l~~~~-~~~~~~~~~~~l~~vl~~~l~LL~Pf~P~itEeiw~~L~~-~~~si~~~~wP~ 786 (961)
.+++|+++++||+|++.+|+|++++. +...+++++.+++.+++.+++||+|||||+|||||+.|+. ..+||+.++||+
T Consensus 707 ~l~~f~~~~l~~~Yl~~~k~rl~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~~aEeiw~~l~~~~~~sv~~~~wP~ 786 (917)
T 1ffy_A 707 EVQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVHTAEEVWSHTPHVKEESVHLADMPK 786 (917)
T ss_dssp HHHHHHHCCCCCCHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHTTSTTCSSSSGGGSCCCC
T ss_pred HHHHHHHHHHHHHHHHhcchhhhccCCCcHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHcccCCCCCeEecCCCC
Confidence 99999977899999999999998753 2346778899999999999999999999999999999986 246999999999
Q ss_pred CCCCCChHHHHHHHHHHH----HHHHHHhhhhhcccCCCceeeEEEEcCHH--HHHHHHhHHHHHHHHcCCccccEEee
Q 002136 787 TSLPRHMSAIKRFENLQS----LTRAIRNARAEYSVEPAKRISASIVANEE--VIQYISKEKEVLALLSRLDLLNVHFT 859 (961)
Q Consensus 787 ~~~~~d~~~~~~~~~~~~----~v~~ir~~r~~~~i~~~~~~~~~i~~~~~--~~~~~~~~~~~i~~l~~~~~~~v~~~ 859 (961)
.+. .|+.+++.++.+++ +..++|.+|++.+|+++.+..+.|..+++ ..+.++.. ..|+.+..++ .+.+.
T Consensus 787 ~~~-~~~~l~~~~~~~~~v~~~v~~~~~~~R~~~~i~~~l~~~v~i~~~~~~~~~~~l~~~-~~l~~~~~~s--~~~~~ 861 (917)
T 1ffy_A 787 VVE-VDQALLDKWRTFMNLRDDVNRALETARNEKVIGKSLEAKVTIASNDKFNASEFLTSF-DALHQLFIVS--QVKVV 861 (917)
T ss_dssp CCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSGGGEEEEEECCSSCCHHHHGGGC-SCHHHHTTSS--EEEEC
T ss_pred CCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEEeCChhhHHHHHhhH-HHHHHHhccc--ceEEe
Confidence 875 57788888888876 46788999999999877666676653333 45555554 4577776664 34443
No 3
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=100.00 E-value=2.3e-158 Score=1469.37 Aligned_cols=740 Identities=27% Similarity=0.481 Sum_probs=666.9
Q ss_pred CCCCCCCh-hhHHHHHHHHHhCCCCCCCCC--CCCCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecC
Q 002136 58 TLPKTFDF-TSEERIYNWWESQGYFKPNFE--RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLP 134 (961)
Q Consensus 58 ~~~~~~~~-~~E~~~~~~W~~~~~f~~~~~--~~~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~ 134 (961)
++ +.||+ ++|++||++|+++++|++..+ .++++|+|++|||||||.|||||++|++++|+++||+||+||+|+|++
T Consensus 4 ~~-~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~ 82 (821)
T 1ile_A 4 EV-GEPNFPKLEEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRA 82 (821)
T ss_dssp CC-CCCCHHHHHHHHHHHHHHTTHHHHHHHHTTTSCBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEE
T ss_pred cc-cCCCHHHHHHHHHHHHHHCCCcccChhhcCCCCcEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCcccccc
Confidence 44 78999 899999999999999997653 467899999999999999999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHHHHcCCCc----cccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHH
Q 002136 135 GTDHAGIATQLVVEKMLAAEGIKR----VELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVV 210 (961)
Q Consensus 135 G~D~~Gl~~q~~vek~l~~~g~~~----~~~~~~~f~~~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~ 210 (961)
||||||+|||.++++.+ |+++ .++++++|.+.|++|+.++++.|++||++||+++||+|+|+||||.|+++|+
T Consensus 83 G~D~~Glpie~~a~k~l---~~~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~ 159 (821)
T 1ile_A 83 GWDTHGLPVELEVEKKL---GLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIW 159 (821)
T ss_dssp EECCCHHHHHHHHHHHT---TCCSHHHHHHHCHHHHHHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHH
T ss_pred cccCCCchHHHHHHHHh---cccccchHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCeEccCCCeEECCHHHHHHHH
Confidence 99999999999988653 5543 4689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCceEEcCeeeecCCCCCccccccccc--cccCCCeEEEEEEEecCC------CeeEEEEecCCCccCCCcE
Q 002136 211 EAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVE--YSEEPGTLYYIKYRVAGR------SDFLTIATTRPETLFGDVA 282 (961)
Q Consensus 211 ~~F~~L~~~GlIy~~~~~v~w~p~~~t~lsd~Ev~--~~e~~~~~~~~~~~~~~~------~~~l~v~TtrPeTl~g~~a 282 (961)
|+|.+|+++|+||++.++|+|||.|+|+|||+||+ |++..++++||+|++.+. +.+|+|||||||||+||+|
T Consensus 160 ~~f~~L~~~Gliy~~~~~v~wcp~~~t~Lad~ev~~G~~~~~~~~~~v~f~~~~~~~~~~~~~~l~v~TTrP~Tl~g~~a 239 (821)
T 1ile_A 160 WSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEVALGYKEIQDPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVA 239 (821)
T ss_dssp HHHHHHHHTTCEEEECCEEEEETTTTEECCHHHHHHTEEEEEEEEEEEEEEBSSGGGGTCSSEEEEEEESCGGGGGGCCC
T ss_pred HHHHHHHHcCCeeecCcceEecCCCCCcccHhHhhcCcccccCceEEEEEEecCCcccCCCCCEEEEEcCCChhhhhcEE
Confidence 99999999999999999999999999999999994 999999999999999875 6899999999999999999
Q ss_pred EEECCC---------Cchh-----------------------hhhccCeeeccCCC--CCeeeeeecCccccCCCcceeE
Q 002136 283 LAVNPQ---------DEHY-----------------------SQFIGMMAIVPMTY--GRHVPIISDKYVDKEFGTGVLK 328 (961)
Q Consensus 283 v~v~P~---------~~~y-----------------------~~l~g~~~~~P~~~--~~~ipii~~~~V~~~~GTG~v~ 328 (961)
|||||+ +++| ++|+|+++.||+.. ++.+||++++||++++|||+||
T Consensus 240 v~v~p~~~y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~p~~~~~~~~~pi~~~~~V~~~~GTG~V~ 319 (821)
T 1ile_A 240 AAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGTQVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVH 319 (821)
T ss_dssp EEECTTSCEEEEEETTEEEEEETTHHHHHTCTTSCEEEEECHHHHTTCBBCCSSCCCCSSCSBEEECTTCCSSSSCSCEE
T ss_pred EEECCCCceeEEEcCCcEEEehHHHHHHHHhhCcEEEEEechHHhcCCEEEcCCcccCCCEEEEEecCcCccCCCCcceE
Confidence 999999 5555 47999999999953 7899999999999999999999
Q ss_pred eCCCCChhHHHHHHHhCCCceeecCCCCcccccccccCCCchHHHHHHHHHHHHHcCCccccccccccCCcccCCCCcee
Q 002136 329 ISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIE 408 (961)
Q Consensus 329 ~~Pah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~ 408 (961)
+|||||++||++|++||||+++++|++|++++. | |+||++++||++|++.|++.|++++.+++.|++|+|||||+|++
T Consensus 320 ~~Pah~~~D~~~~~~~~l~~~~~id~~G~~~~~-~-~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~h~~p~c~r~~~~~~ 397 (821)
T 1ile_A 320 QAPAFGAEDLETARVYGLPLLKTVDEEGKLLVE-P-FKGLYFREANRAILRDLRGRGLLFKEESYLHSYPHCWRCSTPLM 397 (821)
T ss_dssp CCTTSCHHHHHHHHHTTCCCCCCBCTTSBBCSG-G-GTTCBHHHHHHHHHHHHHHTTCEEEEEEEEEEEEBCSSSCCBCE
T ss_pred ecCCCCHHHHHHHHHcCCCcceeECCCCcCccc-C-cCCCCHHHHHHHHHHHHHhCCCeeeeecccccCCEecCCCCEEE
Confidence 999999999999999999999999999999988 7 99999999999999999999999999999999999999999999
Q ss_pred eeeccceeeeccHHHHHHHHHHHcCCceeechhH-HHHHHHHHhcCCCceeeeccCCCcccceEEEcCCcccEEEecChH
Q 002136 409 PLVSKQWFVTMEPLAEKALHAVEKGELTIMPERF-EKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNAD 487 (961)
Q Consensus 409 ~~~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~-~~~~~~wl~~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~ 487 (961)
+++++||||+++++++++++++++ ++|+|+.. ++++.+||++++||||||||+||+|||+|+|++ ++...+..+.+
T Consensus 398 ~~~~~qWF~~~~~~~~~~~~~~~~--~~~~P~~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~~~~~-~~~~~vi~~~~ 474 (821)
T 1ile_A 398 YYATESWFIKNTLFKDELIRNNQE--IHWVPPHIKEGRYGEWLKNLVDWALSRNRYWGTPLPIWVCQA-CGKEEAIGSFQ 474 (821)
T ss_dssp EEECCEEEECGGGGHHHHHHHHHH--SEESSGGGTTTTTHHHHHTCCCEECCBCCSSSCBCCEEEESS-SSCCEECCSHH
T ss_pred EEecchhhhchHHHHHHHHHHhcC--eEEECchhhHhHHHHHHhCCchheecccCCCCCeeeEEEecC-CCcEEeeCcHH
Confidence 999999999999999999999874 78999998 468999999999999999999999999999964 45556665665
Q ss_pred HHHHHHHh------------------hcCCCcccccCCCceeeeecCCCccccccCCCCCChhHHhhcCCcceEeeeccc
Q 002136 488 EALEKAHQ------------------KYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDI 549 (961)
Q Consensus 488 ~~~~~~~~------------------~~~~~~~~~~~~dvldtWf~S~l~~~~~~~~p~~~~~~~~~~~P~d~~~~G~Di 549 (961)
++.....+ .|..+..++|++|||||||||+++|+++++||.++++.|++|||+|++++|+||
T Consensus 475 ~l~~~~~~~~~~~~~l~~~~~d~~~~~~~~g~~~~r~~dvld~WfdS~~~~~~~~~~p~~~~~~f~~~~P~dl~~~G~D~ 554 (821)
T 1ile_A 475 ELKARATKPLPEPFDPHRPYVDQVELACACGGTMRRVPYVIDVWYDSGAMPFASLHYPFEHEEVFRESFPADFIAEGIDQ 554 (821)
T ss_dssp HHHHHBSSCCCSSCCCSHHHHTTCEEECTTSSEEEECSCBCCHHHHHHHHHHHTTTTTTSCHHHHHHHSSBSBEEEEGGG
T ss_pred HHHhhccccccchhhhccccccccccCCCCCCchhhcccccceecccccchHhhcCCCccchHHHhhcCCcccccchhhh
Confidence 55321100 010123688999999999999999999999998765789999999999999999
Q ss_pred cccHHHHHHHHHhHhcCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHhCCC-CCccccCHHH
Q 002136 550 LFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIER 628 (961)
Q Consensus 550 l~fw~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~~~-~~D~~f~~~~ 628 (961)
+|||+++|++++..+.|+.||++|++||++++.+|+|||||+||+|+|.++|++||+|++||||++.++ ++|++|+++.
T Consensus 555 ~r~w~~~~~~~~~~~~~~~pf~~v~~hg~vl~~~G~KMSKS~GNvV~p~dli~~yGaDalR~~ll~~~~~~~d~~fs~~~ 634 (821)
T 1ile_A 555 TRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFGPNL 634 (821)
T ss_dssp GGTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSSCCCTTTTCCCCHHHHHTTTCHHHHHHHHHHHSCSSSCEECCHHH
T ss_pred hccHHHHHHHHHHHhcCCCCcceEEEEeeEECCCCCCCCccCCCCCCHHHHHHHhCHHHHHHHHHhCCCCCCCcEecHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999876 9999999999
Q ss_pred HHH-HHHHHHHHHHHHHHHHh--hCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhhhcCChHH
Q 002136 629 LTA-NKAFTNKLWNAGKFILQ--NLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGD 705 (961)
Q Consensus 629 ~~~-~~~~~nkl~N~~rf~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~ 705 (961)
+.+ +++++++|||+++|+.. ++.++.+. .......++..|+|++++++.++++++++|++|+|+.
T Consensus 635 l~~~~~~~~~kl~N~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~f~~ 702 (821)
T 1ile_A 635 VRETVRDYFLTLWNVYSFFVTYANLDRPDLK------------NPPPPEKRPEMDRWLLARMQDLIQRVTEALEAYDPTT 702 (821)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHCCCTT------------SCCCSTTSCHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccCCcc------------cccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 999 69999999999998652 22221100 0000123466899999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhcCC----CC-cee
Q 002136 706 VGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR----KE-ALI 780 (961)
Q Consensus 706 A~~~i~~f~~~~~~n~Yle~~K~~l~~~~~~~~~~~~~~~l~~vl~~~l~LL~Pf~P~itEeiw~~L~~~----~~-si~ 780 (961)
|++.+++|+|+++||+|++.+|+++++......+++++.+++.+++.+++||+|||||+|||||+.|+.. .+ ||+
T Consensus 703 A~~~l~~f~~~~~~n~Yl~~~k~~~~~~~~~~~r~~~~~~l~~~l~~~~~lLaP~~P~~aeelw~~L~~~~~~~~~~sv~ 782 (821)
T 1ile_A 703 SARALRDFVVEDLSQWYVRRNRRRFWKNEDALDREAAYATLYEALVLVATLAAPFTPFLAEVLWQNLVRSVRLEAKESVH 782 (821)
T ss_dssp HHHHHHHHHHHHSSTTTHHHHHHHHHTCTTTSSTTHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHTTTTSTTSCSSGG
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCCCcHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHhccccccCCCCCceE
Confidence 9999999998999999999999988765332234577889999999999999999999999999999864 35 999
Q ss_pred ecCCCCCCC-CCChHHHHHHHHHHHHHHHHHhhhhhccc
Q 002136 781 VSPWPQTSL-PRHMSAIKRFENLQSLTRAIRNARAEYSV 818 (961)
Q Consensus 781 ~~~wP~~~~-~~d~~~~~~~~~~~~~v~~ir~~r~~~~i 818 (961)
.++||+.+. +.|+++++.++.++++++.+|++|++++|
T Consensus 783 ~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~r~~r~~~~~ 821 (821)
T 1ile_A 783 LADWPEADPALADEALVAQMRAVLKVVDLARAARAKSGV 821 (821)
T ss_dssp GSCCCCCCTTTCCHHHHHHHHHHHHHHHHHTTCTTSCCC
T ss_pred eecCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999875 67899999999999999999999999875
No 4
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=100.00 E-value=5.2e-141 Score=1329.20 Aligned_cols=719 Identities=22% Similarity=0.354 Sum_probs=604.1
Q ss_pred CCCCh-hhHHHHHHHHHhCCCCCCCCCCCC---CCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCC
Q 002136 61 KTFDF-TSEERIYNWWESQGYFKPNFERGS---DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGT 136 (961)
Q Consensus 61 ~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~---~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~ 136 (961)
+.||| ++|++||++|+++++|++..+ ++ ++|+|++|||||||.|||||++|+|++|+++||+||+||+|+|++||
T Consensus 2 ~~~~~~~iE~~~~~~W~~~~~f~~~~~-~~~~~~kf~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~Gw 80 (967)
T 1wz2_A 2 AELNFKAIEEKWQKRWLEAKIFEPNIR-DKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAW 80 (967)
T ss_dssp --CCCHHHHHHHHHHHHHHTTTSCCGG-GSCGGGCCBEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCB
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccCcc-ccCCCCcEEEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCCCcC
Confidence 46898 899999999999999998765 33 78999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHH-----------HcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCC--h
Q 002136 137 DHAGIATQLVVEKMLA-----------AEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLD--E 203 (961)
Q Consensus 137 D~~Gl~~q~~vek~l~-----------~~g~~~~~~~~~~f~~~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d--~ 203 (961)
||||+|+|.++++... ..|+++.++ ++| ..|++|+.++.+.+++||++||+++||+|+|+||| |
T Consensus 81 D~~GlPie~~a~~~~~~~~~~~~~~~~~~gi~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~~~T~d~np 157 (967)
T 1wz2_A 81 HITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEIL--WTF-EDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFP 157 (967)
T ss_dssp BCCSSHHHHHHHHHHTTCHHHHHHHHTTSCCCHHHH--HGG-GSHHHHHHHHHHHHHHHHHTTTCCCCTTSCCBCSTTSH
T ss_pred CCCCcHHHHHHHHhhccchhHHHHHHHhcCCCHHHH--HHH-HHHHHHHHHHHHHHHHHHHHhCceEecCCCeEECCCCh
Confidence 9999999988875321 124443333 123 36999999999999999999999999999999999 9
Q ss_pred hhHHHHHHHHHHHHhcCceEEcCeeeecCCCCCccccccccccccCC--CeEEEEEEEecCCC--eeEEEEecCCCccCC
Q 002136 204 QLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEP--GTLYYIKYRVAGRS--DFLTIATTRPETLFG 279 (961)
Q Consensus 204 ~~~~~v~~~F~~L~~~GlIy~~~~~v~w~p~~~t~lsd~Ev~~~e~~--~~~~~~~~~~~~~~--~~l~v~TtrPeTl~g 279 (961)
.|.++|+|+|.+|+++|||||+.++|+|||.|+|+|||+||+|.+.. +.+++|+|++.+++ .+++|||||||||+|
T Consensus 158 ~y~~~v~~~F~~L~~kGliyr~~~~v~wcp~~~T~Lad~Ev~~~~~~~~~~~~~v~f~~~~~~~~~~l~i~TTrPeTl~g 237 (967)
T 1wz2_A 158 PFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVPILDYIIIKFELRENGEVIYLPAATLRPETVYG 237 (967)
T ss_dssp HHHHHHHHHHHHTTTTTCEEECCCCCEECTTTSCBCCSSSCSSCCCCCEECCEEEEEECCCSSSCCEEEEEESCGGGGGG
T ss_pred hHHHHHHHHHHHHHHCCCEEEeceEecccCCCCCCcchhhhccCCCceeceeEEEEEEecCCCCceEEEEEcCCchHhhh
Confidence 99999999999999999999999999999999999999999987644 45689999998753 789999999999999
Q ss_pred CcEEEECCC---------C----c------------hhh-------------hhccCeeeccCCCCCeeeeeecCccccC
Q 002136 280 DVALAVNPQ---------D----E------------HYS-------------QFIGMMAIVPMTYGRHVPIISDKYVDKE 321 (961)
Q Consensus 280 ~~av~v~P~---------~----~------------~y~-------------~l~g~~~~~P~~~~~~ipii~~~~V~~~ 321 (961)
++||||||+ + + +|+ +|+|+++.||+ .++.+||++++||+++
T Consensus 238 ~~avav~P~~~Y~~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~G~~l~G~~~~~P~-~~~~ipi~~~~~V~~~ 316 (967)
T 1wz2_A 238 VTNMWVNPNATYVKAKVRRKDKEETWIVSKEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPV-SGDEVIILPAEFVDPD 316 (967)
T ss_dssp CCEEEECSSSCEEEEEEECSSCEEEEEEEHHHHHHHHHSSCEEEEEEECCSSTTSSCEEECSS-SSCEEEEEECSSCCSS
T ss_pred heEEEECCCCcEEEEEecCCCcceeeehHHHHHHHHHhhccCcEEEEEEEchhhcCCEEECCC-CCCceEEEecccccCC
Confidence 999999999 4 3 232 69999999999 5899999999999999
Q ss_pred CCcceeEeCCCCChhHHHH----------HHHhCCC--------ceeecCC-----------------------------
Q 002136 322 FGTGVLKISPGHDHNDYLL----------ARKLGLP--------ILNVMNK----------------------------- 354 (961)
Q Consensus 322 ~GTG~v~~~Pah~~~D~~~----------~~~~~l~--------~~~~~~~----------------------------- 354 (961)
+|||+||+|||||++||++ +++|||| ++++++.
T Consensus 317 ~GTG~V~~~Pah~~~Dy~~~~~~~~~~~~~~k~~l~~~~~~~l~~i~vi~~~~~g~~~~~~~~~~~~i~~~~d~~~l~~a 396 (967)
T 1wz2_A 317 NATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQA 396 (967)
T ss_dssp STTSCEEECTTSCTTTTTTTSCCSCCSCCCCTTCCCCCCC----------------CCSSCCTTTSSSCCCSSCTTHHHH
T ss_pred CCcccEEeecCCCHHHHHHHHhhccchhHHHHcCCchhhcccccceeeeecCCccccchhhhhhhccCCCccchHHHHHH
Confidence 9999999999999999985 5788987 6776531
Q ss_pred ----------CCcccccccccCCCchHHHHHHHHHHHHHcCCccccccccccCCcccCCCCceeee-eccceeeeccH--
Q 002136 355 ----------DGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPL-VSKQWFVTMEP-- 421 (961)
Q Consensus 355 ----------~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~-~~~qwF~~~~~-- 421 (961)
+|+|+ +|.|+|+.+++||+.|+++|++.|++++.+.+.| +|+|+|||++++++ +++||||++++
T Consensus 397 ~~~~y~~~~~~G~~~--~g~~~G~~v~ea~~~i~~~L~~~g~l~~~~~~~~-~p~~~R~g~~~i~~~~~~qWFi~~~~~~ 473 (967)
T 1wz2_A 397 TKTIYKAEYHKGIFK--VPPYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAE-KNVISRFGNRAVIKIIHDQWFIDYGNPE 473 (967)
T ss_dssp TTHHHHHHHHSCBCC--SSSSCSSBHHHHTTTTHHHHHHHTSEEECCEESS-SCCBCSSSSBCEECCCSSCEEEESCCTT
T ss_pred HHHhhhccccCceEe--ccCcCCcCHHHHHHHHHHHHHhCCCceEEEecCC-CceECCCCCEEEEeccCCccceecCchH
Confidence 67776 7899999999999999999999999998766654 79999999999999 69999999994
Q ss_pred HHHHHHHHHHcCCceeechhHHHHHHHHHhcCCCceeeeccCCCcccce---EEEcCCcc-c-EEEecChHHHHHHHHhh
Q 002136 422 LAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPV---WYIVGKEE-E-YIVARNADEALEKAHQK 496 (961)
Q Consensus 422 ~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~pIP~---~~~~~~~~-~-~~~~~~~~~~~~~~~~~ 496 (961)
+++.++++++ +++|+|+..++++.+|+++++||||||||+||||||+ |.+++.++ . |+...............
T Consensus 474 ~k~~~l~~~~--~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~piP~d~~~~~~~~~ds~iYv~~~~~~~~~~~~~~~ 551 (967)
T 1wz2_A 474 WKEKARKALE--RMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQE 551 (967)
T ss_dssp HHHHHHHHHT--TSCEESSTTHHHHHHHHHSCCEECCCBSSSSSEECTTCTTSEECHHHHTTSTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhh--ccEeeCccccchHHHhhhcccCeeeccCCCCCccCCcCcccccccCCCCceEeehhhhhhHHHHHHHh
Confidence 9999999995 5789999999999999999999999999999999995 55532111 1 21111111111111111
Q ss_pred cCCCcccccCCCceeeeecC----CC-cccc-ccCCCCCC----hhHHhhcCCcceEeeeccccccHHHHHHHHHhHhcC
Q 002136 497 YGKNVEIYQDPDVLDTWFSS----AL-WPFS-TLGWPDVS----ADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTG 566 (961)
Q Consensus 497 ~~~~~~~~~~~dvldtWf~S----~l-~~~~-~~~~p~~~----~~~~~~~~P~d~~~~G~Dil~fw~~~~i~~~~~l~~ 566 (961)
+|-+. -.-.++++|+||.+ +. +++. ..|||... +++|++|||+|++++|+||++||..++++++.++.+
T Consensus 552 ~g~~~-~~l~~~~~d~~~~~~~~~g~~~~~~~~sG~~~~~~~~~~~~~~~w~P~Di~~~G~D~i~~H~~~~~~~~~a~~~ 630 (967)
T 1wz2_A 552 GKLDP-EKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIFR 630 (967)
T ss_dssp TCCCG-GGCCHHHHHHTTTSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHCSCSEEEEEGGGTTTHHHHHHHHHHHHSC
T ss_pred cCCCh-HHcCcccceeeccCccccCccccchhhcCCCHHHHhhhHHHHHhhCCCeEEeeeeCcchhHHHHHHHHHHHHcC
Confidence 22110 01135899999975 22 2222 56787642 367999999999999999999999999998888888
Q ss_pred CCCc-eEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHhCCC-CCccccCHHHHHHHHHHHHHHHHHHH
Q 002136 567 SVPF-SHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTANKAFTNKLWNAGK 644 (961)
Q Consensus 567 ~~Pf-k~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~~~-~~D~~f~~~~~~~~~~~~nkl~N~~r 644 (961)
..|| +.+++||||++ +|+|||||+||+|+|.++|++||+|++||||+++++ ++|++|+.+.+.+.+++++++||+++
T Consensus 631 ~~~~pk~v~~~G~v~~-~G~KMSKS~GNvv~p~d~i~~yGaDalR~~ll~~~~~~~d~~fs~~~~~~~~~~l~rl~n~~~ 709 (967)
T 1wz2_A 631 EEHWPKGIAVNGFGTL-EGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFYELIS 709 (967)
T ss_dssp STTSCCCEEEECCEEE-SSSCCCTTTCCCCBHHHHHHTTCHHHHHHHHHHHCCTTCCEEECHHHHHHHHHHHHHHHHHHH
T ss_pred cccccceEEEeeEEee-CCEEccccccCCCCHHHHHHHhChHHHHHHHHhCCCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 7555 99999999995 999999999999999999999999999999986556 99999999999999999999999999
Q ss_pred HHHhhCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhhHHHHH
Q 002136 645 FILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIE 724 (961)
Q Consensus 645 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~i~~f~~~~~~n~Yle 724 (961)
++.++. .+ ....++..|+|++++++.++++++++|++|+|+.|+.+++.+++ +.+|+|++
T Consensus 710 ~~~~~~---~~----------------~~~~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~A~~~~~~~l~-~~~n~Yi~ 769 (967)
T 1wz2_A 710 QFAEYE---VK----------------GNVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIM-NDLRWYLR 769 (967)
T ss_dssp HHHSSC---CC----------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHH-HHHHHHHH
T ss_pred HHhcCC---CC----------------CcccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-HHHHHHHH
Confidence 886531 10 01234568999999999999999999999999999998876665 45899999
Q ss_pred HhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhcCCCCceeecCCCCCCC-CCChHHHHHHHHHH
Q 002136 725 ASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQTSL-PRHMSAIKRFENLQ 803 (961)
Q Consensus 725 ~~K~~l~~~~~~~~~~~~~~~l~~vl~~~l~LL~Pf~P~itEeiw~~L~~~~~si~~~~wP~~~~-~~d~~~~~~~~~~~ 803 (961)
.+|++ + +++++.+++++|+.+++||+|||||+|||||+.|+. .+||+.++||+++. ..|+++++.++.++
T Consensus 770 ~~k~~-----~---~~~~~~~l~~~l~~l~~LLaP~~P~~aEeiw~~L~~-~~sv~~~~wP~~~~~~~d~~~~~~~~~~~ 840 (967)
T 1wz2_A 770 RTEGR-----D---DEAKRYVLRTLADVWVRLMAPFTPHICEELWEKLGG-EGFVSLAKWPEPVEEWWNETIEAEEEFIR 840 (967)
T ss_dssp HTTTC-----C---CHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHSSC-CSCGGGSCCCCCCSSCCCHHHHHHHHHHH
T ss_pred hccch-----h---HHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcCC-CCceeccCCCCCCcccCCHHHHHHHHHHH
Confidence 98853 1 236778999999999999999999999999999975 46999999999885 67899999999999
Q ss_pred HHHHHHHhhhhhccc-CC
Q 002136 804 SLTRAIRNARAEYSV-EP 820 (961)
Q Consensus 804 ~~v~~ir~~r~~~~i-~~ 820 (961)
++++.+|++|++.++ .|
T Consensus 841 ~~~~~vr~~~~~~~~~~p 858 (967)
T 1wz2_A 841 SVMEDIKEIIEVAKIENA 858 (967)
T ss_dssp HHHHHHHHHHHTSCCCCS
T ss_pred HHHHHHHHHHHHhCCCCC
Confidence 999999999999998 44
No 5
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=100.00 E-value=5.1e-135 Score=1244.86 Aligned_cols=689 Identities=24% Similarity=0.399 Sum_probs=544.6
Q ss_pred CCCCCCCCCh-hhHHHHHHHHHhCCCCCCCCCCCCCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecC
Q 002136 56 KDTLPKTFDF-TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLP 134 (961)
Q Consensus 56 ~~~~~~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~ 134 (961)
...|++.||| ++|++||++|+++++|++..+.++++|++++|||||||.|||||+++++++|+++||+||+||+|+|++
T Consensus 18 ~~~m~~~y~~~~iE~kw~~~W~~~~~f~~~~~~~~~~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~ 97 (880)
T 4arc_A 18 GSHMQEQYRPEEIESKVQLHWDEKRTFEVTEDESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPI 97 (880)
T ss_dssp ---CCSSCCHHHHHHHHHHHHHHTTTTCCCCCTTSCEEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCC
T ss_pred cccccccCChHHHHHHHHHHHHhcCCcccCCcCCCCCEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEec
Confidence 3457889999 899999999999999998876678899999999999999999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHH
Q 002136 135 GTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFI 214 (961)
Q Consensus 135 G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~ 214 (961)
||||||+|||..+ .+.|+++ ++|+.++++.|++||++||+++||+|+++|+|+.|.++++++|.
T Consensus 98 G~D~~Glpie~~a----~~~g~~p------------~~~~~~~i~~~~~~l~~LGis~Dw~~~~~T~d~~~~~~v~~~f~ 161 (880)
T 4arc_A 98 GWDAFGLPAEGAA----VKNNTAP------------APWTYDNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFT 161 (880)
T ss_dssp EECCCSTHHHHHH----HHTTSCH------------HHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHH
T ss_pred CccccCcHHHHHH----HHcCCCH------------HHHHHHHHHHHHHHHHHhCCCcCCCCCEEcCCHHHHHHHHHHHH
Confidence 9999999976654 4567664 36778999999999999999999999999999999999999999
Q ss_pred HHHhcCceEEcCeeeecCCCCCccccccccc------------cccCC--------------------------------
Q 002136 215 RLHEKGLIYQGSYMVNWSPNLQTAVSDLEVE------------YSEEP-------------------------------- 250 (961)
Q Consensus 215 ~L~~~GlIy~~~~~v~w~p~~~t~lsd~Ev~------------~~e~~-------------------------------- 250 (961)
+|+++|+||++.++|+|||.|+|+|||+||. +++..
T Consensus 162 ~L~ekGliY~~~~~v~wcp~~~t~La~~ev~~g~~~~~g~~ve~~~~~~~f~~i~~y~~~Ll~~l~~~~~wp~~v~~~~~ 241 (880)
T 4arc_A 162 ELYKKGLVYKKTSAVNWCPNDQTVLANEQVIDGCCWRCDTKVERKEIPQWFIKITAYADELLNDLDKLDHWPDTVKTMQR 241 (880)
T ss_dssp HHHHTTCEEEEEECC------------------------------CEEEEEECGGGGHHHHHHHGGGCTTSCHHHHHHHH
T ss_pred HHHHCCCEEEeceeEeecCCcCCEecchhhhcCcCcCCCCccEEEEccceEEeechhHHHHHHHHhhcccccHHHHHHHH
Confidence 9999999999999999999999999997663 33321
Q ss_pred -----CeEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCchhhhh------------------------------
Q 002136 251 -----GTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQF------------------------------ 295 (961)
Q Consensus 251 -----~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~y~~l------------------------------ 295 (961)
+..++|+|++.+++.+|+|||||||||+|++||||||++++++.+
T Consensus 242 ~wig~s~g~~v~f~~~~~~~~i~v~TTrP~Tl~g~t~vav~Pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (880)
T 4arc_A 242 NWIGRSEGVEITFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPELAAFIDECRNTKVAEAEMATMEKK 321 (880)
T ss_dssp HHHCEEEEEEEEEEETTCSSEEEEEESCGGGGGGCCEEEECTTCHHHHHHGGGCHHHHHHHTC----------------C
T ss_pred hhhccccceEEEEEecCCCceEEEEeCCchhhcCCeEEEECCCcHHHHHHhcChHHHHHHHHHHhccCchhhhhccceee
Confidence 235789999998888999999999999999999999999987553
Q ss_pred ---ccCeeeccCCCCCeeeeeecCccccCCCcceeEeCCCCChhHHHHHHHhCCCceeecCC---------------CCc
Q 002136 296 ---IGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNK---------------DGT 357 (961)
Q Consensus 296 ---~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~v~~~Pah~~~D~~~~~~~~l~~~~~~~~---------------~G~ 357 (961)
+|++++||+ .|+.+||+.++||++++|||+||+|||||++||++|++||||++++++. +|.
T Consensus 322 g~~~g~~~~~P~-~~~~ipi~~~~yV~~~~GTGaV~~~Pahd~~D~~~~~~~~Lpi~~vi~~~~~~~~~~~~~~~~~~g~ 400 (880)
T 4arc_A 322 GVDTGFKAVHPL-TGEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGV 400 (880)
T ss_dssp EEEEEEEEECTT-TCCEEEEEEETTSCSSSTTSEEEECTTTCHHHHHHHHHHTCCCCCCBCCTTSCCCCCSSSCCCSCCC
T ss_pred ccccCcEEecCC-CCCEeEEEEeCccccCCCCceEEEccCCCHHHHHHHHHcCCCceEeeccCcccccccccccccCCce
Confidence 789999999 5899999999999999999999999999999999999999999998853 344
Q ss_pred ccccccccCCCchHHHHHHHHHHHHHcCCccccccccccCCcccCCCCceeeeeccceeeeccHHHHHHHHHHHcCCcee
Q 002136 358 LNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTI 437 (961)
Q Consensus 358 ~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~qwF~~~~~~~~~~~~~~~~~~~~~ 437 (961)
+. ++|.|.||+++|||++|+++|+++|++.+. ++|
T Consensus 401 ~~-ns~~~~Gl~~~eA~~~ii~~L~~~g~~~~~--------------------------------------------v~y 435 (880)
T 4arc_A 401 LF-NSGEFNGLDHEAAFNAIADKLTAMGVGERK--------------------------------------------VNY 435 (880)
T ss_dssp BC-SSGGGTTCCHHHHHHHHHHHHHHTTSEEEE--------------------------------------------EEE
T ss_pred ee-cCcccCCCCHHHHHHHHHHHHHHcCCccee--------------------------------------------EEE
Confidence 43 679999999999999999999999986443 111
Q ss_pred echhHHHHHHHHHhcCCCceeeeccCCCcccceEEEcCCcccEEEecCh--------------HHHHHHHHh----hcCC
Q 002136 438 MPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNA--------------DEALEKAHQ----KYGK 499 (961)
Q Consensus 438 ~P~~~~~~~~~wl~~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~--------------~~~~~~~~~----~~~~ 499 (961)
+|+|||||||||||+|||+|||+. |+...+..+. ..++....+ .|.
T Consensus 436 --------------rlrDW~iSRQRyWG~PIPi~~c~~-cg~v~v~~~~Lpv~lp~~~~~~~~g~pl~~~~~w~~~~cp- 499 (880)
T 4arc_A 436 --------------RLRDWGVSRQRYWGAPIPMVTLED-GTVMPTPDDQLPVILPEDVVMDGITSPIKADPEWAKTTVN- 499 (880)
T ss_dssp --------------SCCCEECEESCSSSCBCCEEEETT-SCEEECCGGGCSCCCCSSCCCCSSSCHHHHSTTTTEEESS-
T ss_pred --------------EcccceeeeeeccCCcceEEEECC-CCeEeCChHHCccccchhcccCCCCCchHhCccceeeccC-
Confidence 579999999999999999999964 3433332211 012222211 232
Q ss_pred CcccccCCCceeeeecCCCccccccCCCCCC-----hhHHhhcCCcceEeeecc--ccccHHHHHH-----HHHhHhcCC
Q 002136 500 NVEIYQDPDVLDTWFSSALWPFSTLGWPDVS-----ADDFKKFYPTTMLETGHD--ILFFWVARMV-----MMGIEFTGS 567 (961)
Q Consensus 500 ~~~~~~~~dvldtWf~S~l~~~~~~~~p~~~-----~~~~~~~~P~d~~~~G~D--il~fw~~~~i-----~~~~~l~~~ 567 (961)
+..++||+|||||||||+ |||++++||.++ .+++++|||+|++++|.| |+|+|++|+. .+++ +.++
T Consensus 500 g~~~~retDtmDtw~dSs-wy~~r~~~p~~~~~~~~~~~~~~~~PvD~yigG~EHailHllyaRf~~~~L~~~g~-~~~~ 577 (880)
T 4arc_A 500 GMPALRETDTFDTFMESS-WYYARYTCPQYKEGMLDSEAANYWLPVDIYIGGIEHAIMHLLYFRFFHKLMRDAGM-VNSD 577 (880)
T ss_dssp SSEEEECCCEECTTTGGG-THHHHTTSTTCCSSSCCHHHHHHHCSEEEEECCGGGTTTHHHHHHHHHHHHHHTTS-CCCS
T ss_pred CCcceeCCCcCCCcccCc-HHHHhhcCCCccccccChHHHhccCCceEeecchhhHHHHHHHHHHHHHHHHHhhc-ccCC
Confidence 456899999999999998 999999999853 467899999999999977 6777777753 3333 3678
Q ss_pred CCceEEEEeceEE-------cCCCc------------------------------------cccccCCCccCchhhhhhc
Q 002136 568 VPFSHVYLHGLIR-------DSQGR------------------------------------KMSKTLGNVIDPIDTIKEF 604 (961)
Q Consensus 568 ~Pfk~v~~hg~v~-------d~~G~------------------------------------KMSKS~GNvI~p~dii~~y 604 (961)
.||+++++||||+ |.+|+ |||||+||+|+|.++|++|
T Consensus 578 ePFk~ll~qGmVl~~~~~~~d~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~G~~v~~~~~eKMSKSkGNvVdP~diIekY 657 (880)
T 4arc_A 578 EPAKQLLCQGMVLADAFYYVGENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSKNNGIDPQVMVERY 657 (880)
T ss_dssp CSEEEEECCCCEEEEEEEEECTTSCEEEECSTTCEEEECTTCCEEEEECTTCCBCEEEEEEECCTTTTCCCCHHHHHHHH
T ss_pred CChHHeEEeceEeecceeccccCCcccccCHHHhccccccccccccccccCCccccccccccccCcCCCCCCHHHHHHHc
Confidence 9999999999996 88888 9999999999999999999
Q ss_pred ChhHHHHHHHhCCC-CCccccCHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhHHHHHhhccchhhhhcCCCchhHHH
Q 002136 605 GADALRFTISLGTA-GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWV 683 (961)
Q Consensus 605 GaDalR~~L~~~~~-~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~i 683 (961)
|||++|||+++.++ ++|++|+++.+++.++|++++||++++.......... ....++..|+|+
T Consensus 658 GADalRl~ll~~~~~~~dl~~s~~~ie~a~rfl~rlwn~~~~~~~~~~~~~~----------------~~~~l~~~D~~l 721 (880)
T 4arc_A 658 GADTVRLFMMFASPADMTLEWQESGVEGANRFLKRVWKLVYEHTAKGDVAAL----------------NVDALTENQKAL 721 (880)
T ss_dssp CHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTCCCCCC----------------CSTTCCHHHHHH
T ss_pred CchHHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhccccccc----------------ccccCCHHHHHH
Confidence 99999999999876 9999999999999999999999999887654211000 112456789999
Q ss_pred HHHHHHHHHHHHHhhh-cCChHHHHHHHHHHHHHhhhHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCch
Q 002136 684 VSKLHMLIDTVTASYD-KYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMP 762 (961)
Q Consensus 684 l~~l~~~~~~v~~a~e-~~~f~~A~~~i~~f~~~~~~n~Yle~~K~~l~~~~~~~~~~~~~~~l~~vl~~~l~LL~Pf~P 762 (961)
+++++.++++|+++|+ +|+|+.|++++++|+ +++++ | .+ +. ..+..++..+++.+++||+||||
T Consensus 722 l~~l~~~i~~V~~a~ed~~~fntAi~~l~efv-n~l~k-~---------~~-~~---~~~~~~l~~~l~~ll~LLaPf~P 786 (880)
T 4arc_A 722 RRDVHKTIAKVTDDIGRRQTFNTAIAAIMELM-NKLAK-A---------PT-DG---EQDRALMQEALLAVVRMLNPFTP 786 (880)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH-HHHHT-S---------CC-SS---HHHHHHHHHHHHHHHHHHTTTSH
T ss_pred HHHHHHHHHHHHHHHHhhhchhHHHHHHHHHH-HHHHh-h---------hc-cc---hHHHHHHHHHHHHHHHHHhhccH
Confidence 9999999999999998 899999999999998 44432 2 11 11 23567899999999999999999
Q ss_pred hhHHHHHHHhcCCCCceeecCCCCCCCCCChHHHHHHHHHHHHHHHHHhhhhhcccCCCceeeEEEEcCHHHHHHHHhHH
Q 002136 763 FVTEELWQSLRKRKEALIVSPWPQTSLPRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISASIVANEEVIQYISKEK 842 (961)
Q Consensus 763 ~itEeiw~~L~~~~~si~~~~wP~~~~~~d~~~~~~~~~~~~~v~~ir~~r~~~~i~~~~~~~~~i~~~~~~~~~~~~~~ 842 (961)
|+|||||+.|+.. +||+.++||++++ ++... +.+.-+|+.+.++|.+..+++.. +.+++.+...+..
T Consensus 787 hiaEElW~~Lg~~-~sv~~~~wP~~d~----~~l~~-~~~~~~vqvngk~r~~~~v~~~~-------~~~~~~~~~~~~~ 853 (880)
T 4arc_A 787 HICFTLWQELKGE-GDIDNAPWPVADE----KAMVE-DSTLVVVQVNGKVRAKITVPVDA-------TEEQVRERAGQEH 853 (880)
T ss_dssp HHHHHHHHHTTCS-SCGGGSCCCCCCH----HHHCC-SEEEEEEEETTEEEEEEEEETTC-------CHHHHHHHHHHCH
T ss_pred HHHHHHHHHcCCC-CeEEeCCCCCCCH----HHhcc-CceEEEEEEecceEEEEEcCCCC-------CHHHHHHHHhcCH
Confidence 9999999999875 6899999999762 11000 00001122233333333332210 2233445555556
Q ss_pred HHHHHHcCCccccEEeecCCCCCCCCcEEEEe
Q 002136 843 EVLALLSRLDLLNVHFTESPPGDANQSVHLVA 874 (961)
Q Consensus 843 ~~i~~l~~~~~~~v~~~~~~~~~~~~~v~~~v 874 (961)
.+.+.|.+.+..+++++ |++.|++|+
T Consensus 854 ~~~~~~~~~~~~k~i~v------~~k~vn~v~ 879 (880)
T 4arc_A 854 LVAKYLDGVTVRKVIYV------PGKLLNLVV 879 (880)
T ss_dssp HHHTTTTTCCCCEEEEE------TTTEEEEEC
T ss_pred HHHHHhCCCCceEEEEE------CCCEEEEEe
Confidence 67777777777788876 567787765
No 6
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=100.00 E-value=3e-130 Score=1214.08 Aligned_cols=685 Identities=25% Similarity=0.384 Sum_probs=521.4
Q ss_pred CCCh-hhHHHHHHHHHhCCCCCCCC-CCCCCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCC
Q 002136 62 TFDF-TSEERIYNWWESQGYFKPNF-ERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHA 139 (961)
Q Consensus 62 ~~~~-~~E~~~~~~W~~~~~f~~~~-~~~~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~ 139 (961)
.||| ++|++||++|+++++|++.. +.++++|++++|||||||.|||||+++++++|+++||+||+||+|+|++|||||
T Consensus 3 ~y~~~~iE~kw~~~W~~~~~f~~~~~~~~~~k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~ 82 (878)
T 2v0c_A 3 KYNPHAIEAKWQRFWEEKGFMKAKDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAF 82 (878)
T ss_dssp CCCCTTHHHHHHHHHHHHTTTCCCSCCC---EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCS
T ss_pred CCCHHHHHHHHHHHHHHcCCcccCcccCCCCCEEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcc
Confidence 6999 89999999999999999877 556778999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhc
Q 002136 140 GIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEK 219 (961)
Q Consensus 140 Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~ 219 (961)
|+|||.+++ +.|+++ ++|++++++.|++||++||+++||+|+|+|+|+.|.++++++|.+|+++
T Consensus 83 Glpie~~a~----k~g~~~------------~~~~~~~~~~~~~~~~~LGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~k 146 (878)
T 2v0c_A 83 GLPAENAAL----KFGVHP------------KDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEK 146 (878)
T ss_dssp SHHHHHHHH----HTTCCH------------HHHHHHHHHHHHHHHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHH----HcCCCH------------HHHHHHHHHHHHHHHHHhCCccCcCCCeecCCHHHHHHHHHHHHHHHHC
Confidence 999877654 457653 5788999999999999999999999999999999999999999999999
Q ss_pred CceEEcCeeeecCCCCCcccccccccccc--C-C----------------------------------------------
Q 002136 220 GLIYQGSYMVNWSPNLQTAVSDLEVEYSE--E-P---------------------------------------------- 250 (961)
Q Consensus 220 GlIy~~~~~v~w~p~~~t~lsd~Ev~~~e--~-~---------------------------------------------- 250 (961)
|+||++.++|+|||.|+|+|||+||++.. . .
T Consensus 147 GliY~~~~~v~w~p~~~t~La~~ev~~g~~~~~~~~~~~~~~~~~~f~~l~~~~~~L~~~l~~~~~p~~~~~~~~~wi~~ 226 (878)
T 2v0c_A 147 GLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIGR 226 (878)
T ss_dssp TCEEEEEEEEEEETTTTEEECGGGEETTEESSCTTCBCEEEEEEEEEECGGGGHHHHHHTTTTCBSCHHHHHHHHHHHCE
T ss_pred CCEEEcceeEEEeCCCCCCcCHHHHhcCCCcccCCCceEEEecceeeEecchhHHHHHHHhhhcCCCHHHHHHHHHHhcc
Confidence 99999999999999999999999996532 1 1
Q ss_pred CeEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCchhhhh-----------------------------------
Q 002136 251 GTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQF----------------------------------- 295 (961)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~y~~l----------------------------------- 295 (961)
+..++|+|++.+++.+|+|||||||||+|++||||||+++++..+
T Consensus 227 s~g~~v~f~~~~~~~~l~v~TTrP~Tl~g~~~vav~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 306 (878)
T 2v0c_A 227 SEGAEILFPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAAKRKTEIERQAEGREKTGVF 306 (878)
T ss_dssp EEEEEEEEEBTTSSCEEEEEESCGGGGGGCCEEEECTTSHHHHHHSCGGGHHHHHHHHHHHHTSCHHHHHCSSSCCCCEE
T ss_pred ccCceEEEEecCCCceEEEEeCCchhhhCcEEEEEcCCCeeeehhccchhHHHHHHHHHHHhhhhhhhhhhccceeeeEe
Confidence 134678899988788999999999999999999999999987554
Q ss_pred ccCeeeccCCCCCeeeeeecCccccCCCcceeEeCCCCChhHHHHHHHhCCCceeecCCC---------Ccccc-----c
Q 002136 296 IGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKD---------GTLNE-----V 361 (961)
Q Consensus 296 ~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~v~~~Pah~~~D~~~~~~~~l~~~~~~~~~---------G~~~~-----~ 361 (961)
+|+++.||+ .++.+||+.++||++++|||+||+|||||++||++|++||||++++++.+ |.+++ +
T Consensus 307 ~g~~~~~P~-~~~~ipi~~~~~V~~~~GTG~V~~~PaHd~~D~~~~~k~~L~i~~vi~~~~~~~~~~~~~~~~~~g~~~n 385 (878)
T 2v0c_A 307 LGAYALNPA-TGERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGLPIKKVIERPGEPLPEPLERAYEEPGIMVN 385 (878)
T ss_dssp EEEEEECTT-TCCEEEEEECTTSCTTSTTSEEEECTTTCHHHHHHHHHHTCCCCCCEECSSSCCCSSCSSCCCSCCEECS
T ss_pred cCcEEECCC-CCCEeEEEEeCcccCCCCCceEEeCCCCCHHHHHHHHHcCCCceeeeCCCCccccccccccccCCeeEec
Confidence 799999999 58999999999999999999999999999999999999999999999753 23332 4
Q ss_pred ccccCCCchHHHHHHHHHHHHHcCCccccccccccCCcccCCCCceeeeeccceeeeccHHHHHHHHHHHcCCceeechh
Q 002136 362 AGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPER 441 (961)
Q Consensus 362 ~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~ 441 (961)
+|.|.||+++||+++|++.|+++|++.+ + +.|
T Consensus 386 s~~~~Gl~~~eA~~~Ii~~L~~~g~~~~----------------~----------------------------v~~---- 417 (878)
T 2v0c_A 386 SGPFDGTESEEGKRKVIAWLEEKGLGKG----------------R----------------------------VTY---- 417 (878)
T ss_dssp SGGGTTCBHHHHHHHHHHHHHHHTSEEE----------------E----------------------------EEE----
T ss_pred CCCCCCcCHHHHHHHHHHHHHHCCCCCC----------------c----------------------------eEE----
Confidence 6899999999999999999999998422 1 111
Q ss_pred HHHHHHHHHhcCCCceeeeccCCCcccceEEEcCCcccEEEecC--------hHH----------HHHHHHh----hc-C
Q 002136 442 FEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARN--------ADE----------ALEKAHQ----KY-G 498 (961)
Q Consensus 442 ~~~~~~~wl~~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~--------~~~----------~~~~~~~----~~-~ 498 (961)
+|+|||||||||||+|||+|||+. ++...+... ..+ ++..+.+ .| .
T Consensus 418 ----------rlrDW~ISRQR~WG~PIPi~~~~~-~~~v~v~~~~lpv~lp~~~~~~~~~~~g~~pl~~~~~~~~~~cp~ 486 (878)
T 2v0c_A 418 ----------RLRDWLISRQRYWGTPIPMVHCEA-CGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPEFYETTCPK 486 (878)
T ss_dssp ----------SCCCEECEESCSSSEECCEEEETT-TEEEECCGGGCCCCCCCCCCHHHHSCSSSCGGGGCHHHHEEECTT
T ss_pred ----------ecccchhhcccccCCcccEEEECC-CCeEecCHHHccccccchhhhhccccCCCChhhhhHhhcCCcCCC
Confidence 578999999999999999999964 333322210 000 1111111 11 1
Q ss_pred CCcccccCCCceeeeecCCCccccccCCCCCC-----hhHHhhcCCcceEeeecc--ccccHHHHHHHHHhH----hcCC
Q 002136 499 KNVEIYQDPDVLDTWFSSALWPFSTLGWPDVS-----ADDFKKFYPTTMLETGHD--ILFFWVARMVMMGIE----FTGS 567 (961)
Q Consensus 499 ~~~~~~~~~dvldtWf~S~l~~~~~~~~p~~~-----~~~~~~~~P~d~~~~G~D--il~fw~~~~i~~~~~----l~~~ 567 (961)
.+..++|++|||||||||+ ||++.++||.++ ++++++|||+|++++|.| ++|+|++|+....+. +.++
T Consensus 487 cg~~~~retDtmDtwfdSs-w~~~~~~~p~~~~~~~~~~~~~~~~P~D~yi~G~d~~ilhl~y~r~~~~~l~~~g~~~~~ 565 (878)
T 2v0c_A 487 CGGPAKRDTDTMDTFFDSS-WYYLRYTDPHNDRLPFDPEKANAWMPVDQYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVE 565 (878)
T ss_dssp TCSEEEECCCEECHHHHHT-SHHHHTTSTTCSSSSCCHHHHHHHCSBSEEECCGGGTTTHHHHHHHHHHHHHHTTSCSCS
T ss_pred CCCcceecccccccccccc-chhhhccCccccccccCHHHHccCCCCeEEEechHHHHHHHHHHHHHHHHHHHhhcccCC
Confidence 1236899999999999997 999999999863 468899999999999986 567888887654333 4568
Q ss_pred CCceEEEEeceEEcC----------------------------------------------CC-------ccccccCCCc
Q 002136 568 VPFSHVYLHGLIRDS----------------------------------------------QG-------RKMSKTLGNV 594 (961)
Q Consensus 568 ~Pfk~v~~hg~v~d~----------------------------------------------~G-------~KMSKS~GNv 594 (961)
.||++|++||||+|. +| +|||||+||+
T Consensus 566 ~Pfk~l~~~G~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~KMSKSkGNv 645 (878)
T 2v0c_A 566 EPFQGLFTQGMVLAWTDFGPVEVEGSVVRLPEPTRIRLEIPESALSLEDVRKMGAELRPHEDGTLHLWKPAVMSKSKGNG 645 (878)
T ss_dssp CSBSBEECCCCEEEEEEEEEEEEETTEEECCHHHHHHHTCSCSEEEHHHHHHTTCEEEECTTSSEEEEEEEECSGGGTCC
T ss_pred CchHhheecceEeccceeccccccccceeccccccccccccCchhhhhccccccceeeccCCCCchhhhHHHhhccCCCc
Confidence 999999999999984 99 9999999999
Q ss_pred cCchhhhhhcChhHHHHHHHhCCC-CCccccCHHHHHHHHHHHHHHHHHHHHHHhhCC-CCCchhhHHHHHhhccchhhh
Q 002136 595 IDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTANKAFTNKLWNAGKFILQNLP-SQNDISRWEILLAYKFDEEEC 672 (961)
Q Consensus 595 I~p~dii~~yGaDalR~~L~~~~~-~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 672 (961)
|+|.++|++||||++||||++.++ ++|++|+++.+++.++|++++||++++....+. .... ..
T Consensus 646 VdP~diI~~yGADalRl~ll~~~~~~~D~~fs~~~v~~~~~~l~Rl~n~~~~~~~~~~~~~~~---------------~~ 710 (878)
T 2v0c_A 646 VMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGAWRFLNRIYRRVAEDREALLETSGV---------------FQ 710 (878)
T ss_dssp CBHHHHHHHSCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC---------------CC
T ss_pred ccHHHHHHHcCccHHHHHHhccCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHHhcccccccc---------------cC
Confidence 999999999999999999999555 999999999999999999999999887655421 0000 00
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhhHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHH
Q 002136 673 LCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFEN 752 (961)
Q Consensus 673 ~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~i~~f~~~~~~n~Yle~~K~~l~~~~~~~~~~~~~~~l~~vl~~ 752 (961)
...++..|+|++++++.++++|+++|++|+|+.|++++++|+ +++ +.|.+. + .. ..+++++++.
T Consensus 711 ~~~l~~~D~~ll~~l~~~i~~v~~~~e~~~f~~Ai~~l~~f~-~~l-~k~~~~-------~-~~------~~~l~~~l~~ 774 (878)
T 2v0c_A 711 AEALEGKDRELYGKLHETLKKVTEDLEALRFNTAIAALMEFL-NAL-YEYRKD-------R-PV------TPVYRTAIRY 774 (878)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHH-HHHHHH-------C-CS------CHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH-HHH-hhhccc-------c-hh------HHHHHHHHHH
Confidence 123467899999999999999999999999999999999998 455 445331 1 11 1578999999
Q ss_pred HHHHhCCCchhhHHHHHHHhcCCCCceeecCCCCCCCCCChHHHHHHHHHHHHHHHHHhhhhhcccCCCceeeEEEEcCH
Q 002136 753 ILKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQTSLPRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISASIVANE 832 (961)
Q Consensus 753 ~l~LL~Pf~P~itEeiw~~L~~~~~si~~~~wP~~~~~~d~~~~~~~~~~~~~v~~ir~~r~~~~i~~~~~~~~~i~~~~ 832 (961)
+++||+|||||+|||||+.|+ .+||+.++||+++.. ...+.. +.-+++..+++|.+..++++. +.+
T Consensus 775 l~~LLaPf~P~~aEElw~~Lg--~~sv~~~~wP~~d~~--~l~~~~---~~~~vqvngkvR~~i~v~~~~-------~~~ 840 (878)
T 2v0c_A 775 YLQMLFPFAPHLAEELWHWFW--PDSLFEAGWPELDEK--ALEKDV---VEVAVQVNGAVAGTIHIPKDA-------PLE 840 (878)
T ss_dssp HHHHHTTTSHHHHHHHHHHHC--SSCGGGSCCCCCCGG--GGC-------------------------------------
T ss_pred HHHHHcccchHHHHHHHHHcC--CCceeecCCCCCCHH--HHHHHH---HHHHHhhHHHHHHHcccCcCC-------CHH
Confidence 999999999999999999998 569999999998631 011222 333455556778887776542 122
Q ss_pred HHHHHHHhHHHHHHHHcCCccccEEeecCCCCCCCCcEEEEe
Q 002136 833 EVIQYISKEKEVLALLSRLDLLNVHFTESPPGDANQSVHLVA 874 (961)
Q Consensus 833 ~~~~~~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~v~~~v 874 (961)
++.+...+...+.+.|.+.+..+++++ |++.|++++
T Consensus 841 ~~~~~~~~~~~~~~~~~~~~~~k~i~v------~~~~vn~v~ 876 (878)
T 2v0c_A 841 VARAEALKVRNVRAHLEGKEVVKEIYV------PGKILNLVV 876 (878)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHhcCHHHHHHhCCCCcEEEEEE------CCCEEEEEe
Confidence 233333344445556666566666664 456777665
No 7
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=100.00 E-value=5.7e-128 Score=1199.01 Aligned_cols=672 Identities=22% Similarity=0.371 Sum_probs=556.0
Q ss_pred CCCCh-hhHHHHHHHHHhCCCCCCCCCC--CCCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCC
Q 002136 61 KTFDF-TSEERIYNWWESQGYFKPNFER--GSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTD 137 (961)
Q Consensus 61 ~~~~~-~~E~~~~~~W~~~~~f~~~~~~--~~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D 137 (961)
+.||+ ++|++||++|+++++|++..+. ++++|+|++|||||||.|||||++|++++|+++||+||+||+|+|++|||
T Consensus 2 ~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D 81 (810)
T 1wkb_A 2 AELNFKAIEEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWH 81 (810)
T ss_dssp --CCCHHHHHHHHHHHHHTTTTCCCGGGSCGGGEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBB
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccCchhcCCCCcEEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccC
Confidence 46898 8999999999999999987653 36789999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHH----------H-HcCCCccccCHHHH--HHHHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCC--
Q 002136 138 HAGIATQLVVEKML----------A-AEGIKRVELSRDEF--TKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLD-- 202 (961)
Q Consensus 138 ~~Gl~~q~~vek~l----------~-~~g~~~~~~~~~~f--~~~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d-- 202 (961)
|||+|++.++++.. + ..|++ ++++ ...|++|++++.+.|++||++||+++||+++|+|+|
T Consensus 82 ~~G~pie~~a~~~~~~~~~~~~~~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~d~~ 156 (810)
T 1wkb_A 82 ITGSPIVGIAERIKNRDPKTIWIYRDVYKVP-----EEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLF 156 (810)
T ss_dssp CCBSHHHHHHHHHHTTCHHHHHHHHHTSCCC-----HHHHHGGGSHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBCSTTS
T ss_pred CCCChHHHHHHHhcccCchHHHHHHHHhCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEecCCceEecCCc
Confidence 99999998876431 1 12333 3332 236899999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCceEEcCeeeecCCCCCccccccccccccCC--CeEEEEEEEecCCC--eeEEEEecCCCccC
Q 002136 203 EQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEP--GTLYYIKYRVAGRS--DFLTIATTRPETLF 278 (961)
Q Consensus 203 ~~~~~~v~~~F~~L~~~GlIy~~~~~v~w~p~~~t~lsd~Ev~~~e~~--~~~~~~~~~~~~~~--~~l~v~TtrPeTl~ 278 (961)
+.|.++|+++|.+|+++|+||++.++|+|||.|+|+|||+||+|.+.. +.+++|+|++.+++ .+++|||||||||+
T Consensus 157 ~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~La~~ev~~~~~~~~~~~~~v~f~~~~~~~~~~l~v~TTrP~Tl~ 236 (810)
T 1wkb_A 157 PPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVPILDYIIIKFELRENGEVIYLPAATLRPETVY 236 (810)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTCCSBCSSCCEEEEEEEEEECCSSCSCCEEEEEESCGGGGG
T ss_pred hHHHHHHHHHHHHHHHCCCEEECCeeeeccCCcCCCccHHHHhcCCCCccceeEEEEEEccCCCCceEEEEEcCCchHhh
Confidence 999999999999999999999999999999999999999999987644 45678999998754 78999999999999
Q ss_pred CCcEEEECCCC-------------c------------hh-------------hhhccCeeeccCCCCCeeeeeecCcccc
Q 002136 279 GDVALAVNPQD-------------E------------HY-------------SQFIGMMAIVPMTYGRHVPIISDKYVDK 320 (961)
Q Consensus 279 g~~av~v~P~~-------------~------------~y-------------~~l~g~~~~~P~~~~~~ipii~~~~V~~ 320 (961)
|++||||||+. + +| ++|+|+++.||+ .++.+||++++||++
T Consensus 237 g~~av~v~P~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~-~~~~ipi~~~~~V~~ 315 (810)
T 1wkb_A 237 GVTNMWVNPNATYVKAKVRRKDKEETWIVSKEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPV-SGDEVIILPAEFVDP 315 (810)
T ss_dssp GCCEEEECTTSCEEEEEEEETTEEEEEEEEHHHHHHHTTSSCEEEEEEECTTTTTTTCEEECSS-SCCEEEEEECTTSCT
T ss_pred hhhEEEECCCCcEEEEEecCCCcceeeeeHHHHHHHHHhhhcceEEEEEEEchhhcCCEEECCC-CCCeeEEEecCcccC
Confidence 99999999993 2 12 369999999999 589999999999999
Q ss_pred CCCcceeEeCCCCChhHHHH----------HHHhCCC--------ceeecCC----------------------------
Q 002136 321 EFGTGVLKISPGHDHNDYLL----------ARKLGLP--------ILNVMNK---------------------------- 354 (961)
Q Consensus 321 ~~GTG~v~~~Pah~~~D~~~----------~~~~~l~--------~~~~~~~---------------------------- 354 (961)
++|||+||+|||||++||++ |++|||| ++++++.
T Consensus 316 ~~GTG~V~~~Pah~~~D~~~~~~~~~~~~~~~k~~l~~~~~~~l~~~~vi~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~ 395 (810)
T 1wkb_A 316 DNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQ 395 (810)
T ss_dssp TSTTSCEEECTTTCHHHHHHHCCCSCCSCCCTTCSCCCCCC----------------CCTTCCSGGGTSCCCTTCSCTHH
T ss_pred CCCceeEEeCCCCCHHHHHHHHhhccchhHHHHcCCChhhcccccceeeeccCCccccchhhhhhhccCCCcchhhhhhh
Confidence 99999999999999999986 4678887 7777632
Q ss_pred -----------CCcccccccccCCCchHHHHHHHHHHHHHcCCccccccccccCCcccCCCCceeee-eccceeeeccH-
Q 002136 355 -----------DGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPL-VSKQWFVTMEP- 421 (961)
Q Consensus 355 -----------~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~-~~~qwF~~~~~- 421 (961)
+|+++ +|.|+|+.+++||+.|++.|++.|++.+.+.+.+ +|+|+|||++++++ +++||||++++
T Consensus 396 ~~~~~~~~~~~~G~~~--~g~~~G~~v~~a~~~i~~~L~~~g~~~~~~~~~~-~~~~~r~g~~vi~~~~~~qwF~~~~~~ 472 (810)
T 1wkb_A 396 ATKTIYKAEYHKGIFK--VPPYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAE-KNVISRFGNRAVIKIIHDQWFIDYGNP 472 (810)
T ss_dssp HHHHHHHHHHHSCEEC--SGGGTTEEHHHHHHHHHHHHHTTTSEEEEEEESS-SCCBCTTSCBCEEEEEEEEEEECTTCH
T ss_pred hhhhhhhccccCceEe--ccCcCCeEHHHhHHHHHHHHHhCCCeeeEEecCC-CCcCCCCCCEEEEEecCCceeEecChH
Confidence 57776 7899999999999999999999999998777655 69999999999988 79999999995
Q ss_pred -HHHHHHHHHHcCCceeechhHHHHHHHHHhcCCCceeeeccCCCcccc---eEEEcCCccc--EEEecChHHHHHHHHh
Q 002136 422 -LAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIP---VWYIVGKEEE--YIVARNADEALEKAHQ 495 (961)
Q Consensus 422 -~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~pIP---~~~~~~~~~~--~~~~~~~~~~~~~~~~ 495 (961)
++++++++++ ++.|+|+..++++.+|+++++|||||||++||+||| .|.++...++ |+...........+..
T Consensus 473 ~~~~~~l~~~~--~~~~~P~~~~~~~~~~l~~l~Dw~ISRq~~WG~piP~d~~~~~~~~~~~~iYv~~~~~~~~~~~~~~ 550 (810)
T 1wkb_A 473 EWKEKARKALE--RMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQ 550 (810)
T ss_dssp HHHHHHHHHHH--TSEEESGGGHHHHHHHHHHCCCEECEESSSBSCEETTEEEEEECTTTSSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhc--ccEEECcchhchHHHHhhcccCccccccCCCCCcCCcCcceecccCCCCceeeehhhhHHHHHHhHh
Confidence 9999999996 478999999999999999999999999999999999 4666432222 1110001111111111
Q ss_pred hcCCCcccccCCCceeeeecC----CC-ccc-cccCCCCCC----hhHHhhcCCcceEeeeccccccHHHHHHHHHhHhc
Q 002136 496 KYGKNVEIYQDPDVLDTWFSS----AL-WPF-STLGWPDVS----ADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFT 565 (961)
Q Consensus 496 ~~~~~~~~~~~~dvldtWf~S----~l-~~~-~~~~~p~~~----~~~~~~~~P~d~~~~G~Dil~fw~~~~i~~~~~l~ 565 (961)
.+|-+. -.-.++++|+||.+ +. +++ ...|||... +++|++|||+|++++|+||++||...+++++..+.
T Consensus 551 ~~~~~~-~~l~~~~~d~~~~~~~~~g~~~~~~~~sg~~~~~~~~~~~~~~~~~p~Di~~~G~D~~~~H~~~~~~~~~~~~ 629 (810)
T 1wkb_A 551 EGKLDP-EKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIF 629 (810)
T ss_dssp TTCCCG-GGCCHHHHHHHHHSCCCHHHHHHHHHHHSCCHHHHHHHHHHHHHHCSCSEEEEEGGGTTTHHHHHHHHHHHHS
T ss_pred hcCCCH-HHcCccceeeeeccccccCccccchhhhCCCHHHHHhhHHHHHhhCCceEEeecccccccHHHHHHHHHHHHc
Confidence 122110 01245789999854 22 111 145777531 25789999999999999999999999988888877
Q ss_pred CCCCc-eEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHhCCC-CCccccCHHHHHHHHHHHHHHHHHH
Q 002136 566 GSVPF-SHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTANKAFTNKLWNAG 643 (961)
Q Consensus 566 ~~~Pf-k~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~~~-~~D~~f~~~~~~~~~~~~nkl~N~~ 643 (961)
+..|+ +++++||||++ +|+|||||+||||+|.++|++||+|++||||++.++ ++|++|+++.+.+.+++++++||++
T Consensus 630 ~~~~~pk~v~~~G~v~~-~G~KMSKS~GNvv~p~dli~~yGaDalR~~ll~~~~~~~d~~fs~~~~~~~~~~l~rl~n~~ 708 (810)
T 1wkb_A 630 REEHWPKGIAVNGFGTL-EGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFYELI 708 (810)
T ss_dssp CGGGSCCEEEEECCEEE-TTBCCCTTTTCCCBHHHHHHHHCHHHHHHHHHHHCCTTCCEEECHHHHHHHHHHHHHHHHHH
T ss_pred CccccccEEEEEeEEEe-CCeehhhcCCCcCCHHHHHHHcChHHHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHH
Confidence 76444 89999999995 999999999999999999999999999999986555 9999999999999999999999999
Q ss_pred HHHHhhCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhhHHHH
Q 002136 644 KFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYI 723 (961)
Q Consensus 644 rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~i~~f~~~~~~n~Yl 723 (961)
+++.+.. .+ ....++..|+|++++++.+++++.++|++|+|+.|+.+++.+++ +.+|+|+
T Consensus 709 ~~~~~~~---~~----------------~~~~~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~~~~~l~-~~~n~yi 768 (810)
T 1wkb_A 709 SQFAEYE---VK----------------GNVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIM-NDLRWYL 768 (810)
T ss_dssp HHHHTCC---CC----------------SCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHH-HHHHHHH
T ss_pred HHHHhcc---Cc----------------ccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-HHHHHHH
Confidence 8886531 11 01234567999999999999999999999999999997764444 4589999
Q ss_pred HHhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhc
Q 002136 724 EASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLR 773 (961)
Q Consensus 724 e~~K~~l~~~~~~~~~~~~~~~l~~vl~~~l~LL~Pf~P~itEeiw~~L~ 773 (961)
+.+|++ +. .+.+.+++++++.+++||+|||||+|||||+.|+
T Consensus 769 ~~~k~~-----~~---~~~~~~l~~~l~~l~~lLaP~~P~~aEelw~~Lg 810 (810)
T 1wkb_A 769 RRTEGR-----DD---EAKRYVLRTLADVWVRLMAPFTPHICEELWEKLG 810 (810)
T ss_dssp HHTTTC-----CC---HHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHCC
T ss_pred HHhcCc-----ch---hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcC
Confidence 998853 11 1226799999999999999999999999999985
No 8
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=100.00 E-value=2.9e-92 Score=844.39 Aligned_cols=474 Identities=20% Similarity=0.244 Sum_probs=400.7
Q ss_pred CCCCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHH
Q 002136 87 RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEF 166 (961)
Q Consensus 87 ~~~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f 166 (961)
+..++|+|++|||||||.||||||++++++|+++||+||+||+|+|++||||||+|||.++ .++|++++
T Consensus 6 ~~~k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a----~k~g~~~~------- 74 (542)
T 3u1f_A 6 KVEKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAA----KQKQVSPY------- 74 (542)
T ss_dssp -CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHH----HHTTSCHH-------
T ss_pred CCCCCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHH----HHcCCCHH-------
Confidence 3467899999999999999999999999999999999999999999999999999976654 45688764
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCceEEcCeeeecCCCCCcccccccccc
Q 002136 167 TKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEY 246 (961)
Q Consensus 167 ~~~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~w~p~~~t~lsd~Ev~~ 246 (961)
+|+++|++.|+++|++||+++||. +.|+|+.|.++|+++|.+|+++|+||++.++|+|||.|+|+|+|.||+.
T Consensus 75 -----e~~~~~~~~~~~~~~~lgi~~D~~--~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~l~d~~v~~ 147 (542)
T 3u1f_A 75 -----DFTTAVAGEFKKCFEQMDYSIDYF--IRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSISDESFLTPQNITD 147 (542)
T ss_dssp -----HHHHHHHHHHHHHHHHHTCCCSEE--EETTCHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEE
T ss_pred -----HHHHHHHHHHHHHHHHhCCccCcC--ccCCCHHHHHHHHHHHHHHhhcCcEEecceeEEeeccCcccchhhhhhc
Confidence 456889999999999999999985 3499999999999999999999999999999999999999999988731
Q ss_pred ccCCCeEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCchhhhhccCeeeccCCCCCeeeeeecCccccCCCcce
Q 002136 247 SEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGV 326 (961)
Q Consensus 247 ~e~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~ 326 (961)
.
T Consensus 148 ~------------------------------------------------------------------------------- 148 (542)
T 3u1f_A 148 G------------------------------------------------------------------------------- 148 (542)
T ss_dssp E-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred eEeCCCCChhHHHHHHHhCCCceeecCCCCcccccccccCCCchHHHHHHHHHHHHHcCCccccccccccCCcccCCCCc
Q 002136 327 LKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEV 406 (961)
Q Consensus 327 v~~~Pah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~ 406 (961)
|+ ..|. .+++|+|||++
T Consensus 149 ---~~----------------------~~g~--------------------------------------~~~~~~~sg~~ 165 (542)
T 3u1f_A 149 ---VD----------------------KDGN--------------------------------------PCKVSLESGHV 165 (542)
T ss_dssp ---EC----------------------TTSC--------------------------------------EEEEETTTCCB
T ss_pred ---cc----------------------ccCc--------------------------------------cccccCCCCCc
Confidence 00 1121 24689999999
Q ss_pred eeeeeccceeeeccHHHHHHHHHHHcCCceeechhHHHHHHHHHh-cCCCceeeeccC----CCcccceEEEcCCcccEE
Q 002136 407 IEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS-NIKDWCISRQLW----WGHRIPVWYIVGKEEEYI 481 (961)
Q Consensus 407 v~~~~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~-~l~DW~ISRq~~----WG~pIP~~~~~~~~~~~~ 481 (961)
++++.++|||++++++++++++++.++...+.|+..++.+.+|++ +++|||||||++ ||+|||.+-
T Consensus 166 ve~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~l~Dw~ISRq~~~~~~WGipiP~~~--------- 236 (542)
T 3u1f_A 166 VTWVSEENYMFRLSAFRERLLEWYHANPGCIVPEFRRREVIRAVEKGLPDLSVSRARATLHNWAIPVPGNP--------- 236 (542)
T ss_dssp EEEEEEEEEEECGGGGHHHHHHHHHHCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTEE---------
T ss_pred ceeeccccceecchhHHHHHHHHHhhcccccCCchhhHhHhhhhhccccccCccccccCcCCCCCccCCCc---------
Confidence 999999999999999999999999999999999999999999996 599999999998 999999421
Q ss_pred EecChHHHHHHHHhhcCCCcccccCCCceeeeecCCCccccccCCCCCC---------hhHHhhcCCcceEeeecccccc
Q 002136 482 VARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVS---------ADDFKKFYPTTMLETGHDILFF 552 (961)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~dvldtWf~S~l~~~~~~~~p~~~---------~~~~~~~~P~d~~~~G~Dil~f 552 (961)
..++++|||+...+++..+++.+. .......||.|++++|+||++|
T Consensus 237 -------------------------~~~~~vw~da~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~~p~d~~~~G~D~~~f 291 (542)
T 3u1f_A 237 -------------------------DHXVYVWLDALTNYLTGSRLRVDESGKEVSLVDDFNELERFPADVHVIGKDILKF 291 (542)
T ss_dssp -------------------------EEEECHHHHHHTHHHHHHTEEECTTSCEEEECSSGGGTTCCSCSEEEEEGGGHHH
T ss_pred -------------------------CeeeeeeeccchhhhhhhhccccccCCcccccchhhhhcCCcceEEEeccccccc
Confidence 146778888765555443322111 0122245899999999999998
Q ss_pred ----HHHHHHHHHhHhcCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHhCCC-CCccccCHH
Q 002136 553 ----WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIE 627 (961)
Q Consensus 553 ----w~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~~~-~~D~~f~~~ 627 (961)
|++++++. |..|++.|++||++. .+|+|||||+||||+|.+++++||+|+|||||++.++ ++|++|+++
T Consensus 292 h~~~~~a~l~~~-----g~~~~~~v~~hg~l~-~~G~KMSKSlGNvi~p~~~i~~ygaD~lR~~l~~~~~~~~d~~fs~~ 365 (542)
T 3u1f_A 292 HAIYWPAFLLSA-----GLPLPKKIVAHGWWT-KDRKKISKSLGNVFDPVEKAEEFGYDALKYFLLRESGFSDDGDYSDK 365 (542)
T ss_dssp HHTHHHHHHHHH-----TCCCCSCEEEECCCE-ETTBCCBTTTTBCCCHHHHHHHHCHHHHHHHHHHHCCTTSCCEECHH
T ss_pred ccchhHHHHHhh-----cccccceecccccee-cCCceeccccCCCCChhHHHhhcCchHHHHHHHhcCcccccccccHH
Confidence 66665554 445679999999986 7999999999999999999999999999999998776 999999999
Q ss_pred HHHH--HHHHHHHHHHHHHHHHhhCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhhhcCChHH
Q 002136 628 RLTA--NKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGD 705 (961)
Q Consensus 628 ~~~~--~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~ 705 (961)
.+.+ ++.|+|+|||+++++.......... ......++..|+|++++++.++++++++|++|+|+.
T Consensus 366 ~~~~~~n~~l~n~l~N~~~r~~~~~~~~~~~-------------~~~~~~~~~~d~~il~~l~~~~~~~~~~~~~~~~~~ 432 (542)
T 3u1f_A 366 NMIARLNGELADTLGNLVMRCTSAKINVNGE-------------WPSPAAYTEEDESLIQLIKDLPGTADHYYLIPDIQK 432 (542)
T ss_dssp HHHHHHHHTTTTTHHHHHHHHHCTTTSTTSB-------------CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHhhhcccCC-------------CCccchhhHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 9987 4569999999998887654332210 011245677899999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhcCC
Q 002136 706 VGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR 775 (961)
Q Consensus 706 A~~~i~~f~~~~~~n~Yle~~K~~l~~~~~~~~~~~~~~~l~~vl~~~l~LL~Pf~P~itEeiw~~L~~~ 775 (961)
|++.|++|+ ++||+|++..|||...+++.+.+++++.+++++++.+++||||||||+||+||+.|+..
T Consensus 433 a~~~i~~~~--~~~n~Y~~~~~pw~l~k~d~~~~~~~l~~~~~~l~~~~~ll~P~~P~~aeei~~~Lg~~ 500 (542)
T 3u1f_A 433 AIIAVFDVL--RAINAYVTDMAPWKLVKTDPERLRTVLYITLEGVRVTTLLLSPILPRKSVVIFDMLGVP 500 (542)
T ss_dssp HHHHHHHHH--HHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHTCC
T ss_pred HHHHHHHHH--HHHHHHHHhcCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHCCCC
Confidence 999999997 68999999999985544455666777888889999999999999999999999999753
No 9
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=100.00 E-value=2.7e-91 Score=852.89 Aligned_cols=493 Identities=21% Similarity=0.290 Sum_probs=412.6
Q ss_pred CCEEEeCCCCCcCCCCCCchhhH-hHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHH
Q 002136 90 DPFVISMPPPNVTGSLHMGHAMF-VTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTK 168 (961)
Q Consensus 90 ~~f~i~~ppPy~nG~LHiGHa~~-~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~ 168 (961)
++|+|++|||||||.|||||+++ ++++|+++||+||+||+|+|++||||||+|||.++++ +|++++
T Consensus 2 ~~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k----~G~~p~--------- 68 (722)
T 1rqg_A 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALK----EGRSPR--------- 68 (722)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHH----HTCCHH---------
T ss_pred CCEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHH----cCCCHH---------
Confidence 46999999999999999999999 9999999999999999999999999999998877654 487754
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCceEEcCeeeecCCCCCcccccccccccc
Q 002136 169 RVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE 248 (961)
Q Consensus 169 ~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~w~p~~~t~lsd~Ev~~~e 248 (961)
+|++++++.|+++|++||+++||. +.|+|+.|.+.|+++|.+|+++|+||++.++|+|||.|+|+|+|.+|+
T Consensus 69 ---e~~~~~~~~~~~~~~~lgis~D~~--~rT~d~~~~~~v~~~f~~L~~kG~iY~~~~~v~y~~~~~tfl~d~~v~--- 140 (722)
T 1rqg_A 69 ---EIVDEFHEQIKITFQRAKISFDFF--GRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFVI--- 140 (722)
T ss_dssp ---HHHHHHHHHHHHHHHHHTCCCSEE--EETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCC---
T ss_pred ---HHHHHHHHHHHHHHHHhCCCCCCC--eeCCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCcCcchhhcc---
Confidence 567899999999999999999973 569999999999999999999999999999999999999999996541
Q ss_pred CCCeEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCchhhhhccCeeeccCCCCCeeeeeecCccccCCCcceeE
Q 002136 249 EPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLK 328 (961)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~v~ 328 (961)
||
T Consensus 141 --------------------------------------------------------------------------gt---- 142 (722)
T 1rqg_A 141 --------------------------------------------------------------------------GT---- 142 (722)
T ss_dssp --------------------------------------------------------------------------SB----
T ss_pred --------------------------------------------------------------------------cc----
Confidence 22
Q ss_pred eCCCCChhHHHHHHHhCCCceeecCCCCcccccccccCCCchHHHHHHHHHHHHHcCCccccccccccCCcccCCCCcee
Q 002136 329 ISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIE 408 (961)
Q Consensus 329 ~~Pah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~ 408 (961)
||.|+.+ +..|.+|++||.. .++.++..|+|+|||++++
T Consensus 143 -cP~c~~~----------------~~~Gd~c~~~G~~------------------------l~~~~l~~p~~~r~g~~v~ 181 (722)
T 1rqg_A 143 -CPYCGAE----------------DQKGDQCEVCGRP------------------------LTPEILINPRCAICGRPIS 181 (722)
T ss_dssp -CSSSCCS----------------CCCTTTCSSSCCC------------------------CCTTSSBSCBCTTTCCBCE
T ss_pred -cCccCCc----------------cCCcchhhhcccc------------------------cChhhccCCcccCCCcEeE
Confidence 5555443 3578888888753 2345677899999999999
Q ss_pred eeeccceeeeccHHHHHHHHHHHcCCceeechhHHHHHHHHH-hcCCCceeeeccCCCcccceEEEcCCcccEEEecChH
Q 002136 409 PLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWL-SNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNAD 487 (961)
Q Consensus 409 ~~~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl-~~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~ 487 (961)
++.++||||++++++++++++++++. +|+..++++.+|| ++++|||||||++||+|||+|++ +
T Consensus 182 ~~~~~qwF~~l~~~~~~l~~~~~~~~---wp~~~~~~~~~wl~~gl~dw~ISR~~~WG~piP~~~~-g------------ 245 (722)
T 1rqg_A 182 FRDSAHYYIKMQDFAERLKRWIEKQP---WKPNVKNMVLSWIEEGLEERAITRDLNWGIPVPLDEE-D------------ 245 (722)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHSSC---CCHHHHHHHHHHHTTCCCCEECEECCSSSCBCSCCCS-S------------
T ss_pred EEEeccEEEEhHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHCCCcccceeccccCccccCcccc-C------------
Confidence 99999999999999999999998754 5999999999999 89999999999999999997642 1
Q ss_pred HHHHHHHhhcCCCcccccCCCceeeeecCCCccccccC-CCCCC--hhHHhhcCC--c----ceEeeecccccc----HH
Q 002136 488 EALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLG-WPDVS--ADDFKKFYP--T----TMLETGHDILFF----WV 554 (961)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~dvldtWf~S~l~~~~~~~-~p~~~--~~~~~~~~P--~----d~~~~G~Dil~f----w~ 554 (961)
-+.+++|+|||+.+.|++..+ |+... .++|+.||| . +++++|+||++| |+
T Consensus 246 -----------------~~~~~iyvW~da~i~y~~~~~~~~~~~g~~~~~~~~w~~pd~~~~~~h~~GkDii~fH~~~wp 308 (722)
T 1rqg_A 246 -----------------MKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWP 308 (722)
T ss_dssp -----------------STTCEECHHHHGGGHHHHHHHHHHHHTTCTTTTHHHHBCSSCCEEEEEEEEGGGHHHHHTHHH
T ss_pred -----------------CCCCEEEEEeccccchhhhHHHHHhhcCCchHHHhccCCCCCCCeeEEEccccccccchhhhH
Confidence 024699999999888776543 43211 135887887 2 289999999988 77
Q ss_pred HHHHHHHh-----HhcC-CCCceEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHhCCC-CCccccCHH
Q 002136 555 ARMVMMGI-----EFTG-SVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIE 627 (961)
Q Consensus 555 ~~~i~~~~-----~l~~-~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~~~-~~D~~f~~~ 627 (961)
+.+++.+. .+.| .+| ++|++||||++ +|+|||||+||+|+|.+++++||+|++||||++..+ ++|++|+++
T Consensus 309 A~l~~~~~~l~~d~~rg~~~P-k~v~~hG~v~~-~G~KMSKS~GNvV~p~d~i~~ygaDalR~~ll~~~~~~~D~~fs~~ 386 (722)
T 1rqg_A 309 AFLMAYGKYKDEEVEAEWNLP-YDIPANEYLTL-EGKKFSTSRNWAIWVHEFLDVFPADYLRYYLTTIMPETRDSDFSFS 386 (722)
T ss_dssp HHHHTTCCBCSSSCCBCBCCC-SBCCEECCEEE-TTEECBTTTTBSCBHHHHTTTSCHHHHHHHHHHTCCSSSCEEECHH
T ss_pred HHHhccCCCcccccccCCCCC-CEEEEeeeEEe-CCeeeeeeCCCcCCHHHHHHhcCchHHHHHHHhcCCCCCCCccCHH
Confidence 74432221 0112 578 99999999996 999999999999999999999999999999999867 999999999
Q ss_pred HHHH--HHHHHHHHHHHHHHHH----hhCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhhhcC
Q 002136 628 RLTA--NKAFTNKLWNAGKFIL----QNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKY 701 (961)
Q Consensus 628 ~~~~--~~~~~nkl~N~~rf~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~ 701 (961)
.+.. +.+++++++|+++++. .++.+..+ ....+...|+|++++++.+++.+.++|++|
T Consensus 387 ~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~----------------~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~ 450 (722)
T 1rqg_A 387 DFKVRINEELVNNLGNFVHRALTFVNRYFDGVVP----------------ERGELDELDREALEEIEKAFKEVGELIMNY 450 (722)
T ss_dssp HHHHHHHHTTTTTHHHHHHHHHHHHHHHSTTBCC----------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC----------------CcccCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9987 4558889999765443 33322111 012345679999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHhhhHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhcCC
Q 002136 702 FFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR 775 (961)
Q Consensus 702 ~f~~A~~~i~~f~~~~~~n~Yle~~K~~l~~~~~~~~~~~~~~~l~~vl~~~l~LL~Pf~P~itEeiw~~L~~~ 775 (961)
+|+.|++.+++|+ +++|+|++..|||.+.+++.....+++.+++++++.+++||+|||||+||+||+.|+..
T Consensus 451 ~f~~A~~~i~~~~--~~~n~Yi~~~kpw~~~k~~~~~~~~vl~~l~~~l~~l~~lL~P~~P~~aeei~~~L~~~ 522 (722)
T 1rqg_A 451 RFKDALKRVMSLA--SFGNRYFDHKQPWKTAKEDKVRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLLNLD 522 (722)
T ss_dssp CHHHHHHHHHHHH--HHHHHHHHTTCHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHH--HHHHHHHHhcCchhhcCCCHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHcCCC
Confidence 9999999999997 69999999999998865444455667788899999999999999999999999999864
No 10
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=100.00 E-value=3.5e-87 Score=800.92 Aligned_cols=494 Identities=21% Similarity=0.362 Sum_probs=416.1
Q ss_pred CCCCCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHH
Q 002136 86 ERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDE 165 (961)
Q Consensus 86 ~~~~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~ 165 (961)
+.++++|+|++|||||||.|||||+++++++|+++||+||+||+|+|++|||+||+||+.++++ .|+++.
T Consensus 14 ~~~~~~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~----~g~~~~------ 83 (560)
T 3h99_A 14 TQVAKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQ----LGITPE------ 83 (560)
T ss_dssp ---CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHH----HTSCHH------
T ss_pred CCCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHH----hCCCHH------
Confidence 3467899999999999999999999999999999999999999999999999999998776654 577654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCceEEcCeeeecCCCCCccccccccc
Q 002136 166 FTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVE 245 (961)
Q Consensus 166 f~~~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~w~p~~~t~lsd~Ev~ 245 (961)
++++++.+.++++|++||+++| +.+.|+++.|.+.|+++|.+|+++|+||++.+.++|||.|+|+|+|.+|+
T Consensus 84 ------~~~~~~~~~~~~~~~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~ 155 (560)
T 3h99_A 84 ------QMIGEMSQEHQTDFAGFNISYD--NYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVK 155 (560)
T ss_dssp ------HHHHHHHHHHHHHHHHTTCCCS--EEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEE
T ss_pred ------HHHHHHHHHHHHHHHHcCCCCC--CceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCceecchhcC
Confidence 3457788999999999999877 34569999999999999999999999999999999999999999997662
Q ss_pred cccCCCeEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCchhhhhccCeeeccCCCCCeeeeeecCccccCCCcc
Q 002136 246 YSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTG 325 (961)
Q Consensus 246 ~~e~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG 325 (961)
|
T Consensus 156 -----------------------------------------------------------------------------g-- 156 (560)
T 3h99_A 156 -----------------------------------------------------------------------------G-- 156 (560)
T ss_dssp -----------------------------------------------------------------------------E--
T ss_pred -----------------------------------------------------------------------------C--
Confidence 1
Q ss_pred eeEeCCCCChhHHHHHHHhCCCceeecCCCCcccccccccCCCchHHHHHHHHHHHHHcCCccccccccccCCcccCCCC
Q 002136 326 VLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGE 405 (961)
Q Consensus 326 ~v~~~Pah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~ 405 (961)
.||.|+.. ++.|..|++||.+ ..+.+...|+|+|||+
T Consensus 157 ---~cp~c~~~----------------~~~gd~ce~cg~~------------------------~~~~~l~~~~~~~~g~ 193 (560)
T 3h99_A 157 ---TCPKCKSP----------------DQYGDNCEVCGAT------------------------YSPTELIEPKSVVSGA 193 (560)
T ss_dssp ---ECTTTCCS----------------SEETTBCTTTCCB------------------------CCGGGCEEEEETTTCC
T ss_pred ---CCCCCCCc----------------ccccchhhhcccc------------------------CChhhhcCCccccCCC
Confidence 25555432 4678999999975 2345566799999999
Q ss_pred ceeeeeccceeeeccHHHHHHHHHHHcCCceeechhHHHHHHHHHh-cCCCceeeecc-CCCcccceEEEcCCcccEEEe
Q 002136 406 VIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS-NIKDWCISRQL-WWGHRIPVWYIVGKEEEYIVA 483 (961)
Q Consensus 406 ~v~~~~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~-~l~DW~ISRq~-~WG~pIP~~~~~~~~~~~~~~ 483 (961)
+++++.++|||++++++++.++++++++ ++|+..++.+.+||+ +++|||||||+ |||+|||. +
T Consensus 194 ~~~~~~~~~~f~~l~~~~~~l~~~~~~~---~~~~~~~~~~~~~l~~~l~D~~IsR~~~~WG~~iP~------~------ 258 (560)
T 3h99_A 194 TPVMRDSEHFFFDLPSFSEMLQAWTRSG---ALQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPN------A------ 258 (560)
T ss_dssp CCEEEEEEEEEECGGGGHHHHHHHHHTS---CSCHHHHHHHHHHHHHCCCCEECEEESSCSSCBCTT------C------
T ss_pred CceEEecceEEEEHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHhcCCCCCCccccCCcCCeeCCC------C------
Confidence 9999999999999999999999999874 367778999999997 89999999998 99999993 0
Q ss_pred cChHHHHHHHHhhcCCCcccccCCCceeeeecCCCcccccc-CCCCCC--hhHHhhcCCcc-----eEeeeccccc----
Q 002136 484 RNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTL-GWPDVS--ADDFKKFYPTT-----MLETGHDILF---- 551 (961)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~dvldtWf~S~l~~~~~~-~~p~~~--~~~~~~~~P~d-----~~~~G~Dil~---- 551 (961)
+.+|+|||||+.++|++.. +|+.+. ..+|++|||.| ++++|+||++
T Consensus 259 ----------------------~~~viyvW~da~~~y~s~~~~~~~~~~~~~~~~~~wp~~~~~~~~~~~G~D~~~fh~~ 316 (560)
T 3h99_A 259 ----------------------PGKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGKDIVYFLSL 316 (560)
T ss_dssp ----------------------TTEEECHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHBTTCCSEEEEEEEGGGHHHHHT
T ss_pred ----------------------CCceEEeCcccchhHHHHHHHHhhccCChhhHHHhCcCCCCceeEEEeccccchhHHH
Confidence 2369999999998888766 465422 15799999999 9999999999
Q ss_pred cHHHHHHHHHhHhcCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHhCCC-C-CccccCHHHH
Q 002136 552 FWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-G-QDLSLSIERL 629 (961)
Q Consensus 552 fw~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~~~-~-~D~~f~~~~~ 629 (961)
||+++|+++++ .+| ++|++||||++ +|+|||||+||||+|.|+|++||+|++||||++..+ + +|++|+++.+
T Consensus 317 ~~~a~l~~~g~----~~p-~~v~~hg~v~~-~G~KMSKS~GNvv~p~d~i~~~GaDalR~~ll~~~~~~~~d~~f~~~~~ 390 (560)
T 3h99_A 317 FWPAMLEGSNF----RKP-SNLFVHGYVTV-NGAKMSKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDF 390 (560)
T ss_dssp HHHHHHHHTTB----CCC-SEEEEECCEEE-TTEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHHCCSSCCCEEECHHHH
T ss_pred HHHHHHHhCCC----CCC-cEEEEEeEEEe-CCeeccccCCCcCCHHHHHHHcCcHHHHHHHHHhCCCCCCCCCcCHHHH
Confidence 68887666543 567 99999999995 999999999999999999999999999999998776 6 8999999999
Q ss_pred HH--HHHHHHHHHHHHHHHHhhCCC-CCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhhhcCChHHH
Q 002136 630 TA--NKAFTNKLWNAGKFILQNLPS-QNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDV 706 (961)
Q Consensus 630 ~~--~~~~~nkl~N~~rf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A 706 (961)
.+ ++++++++||++.++...+.. +.. . ......|+|++++++.+++.++++|++|+|+.|
T Consensus 391 ~~~~~~~l~~~l~n~~~R~~~~~~~~~~~--------------~---~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a 453 (560)
T 3h99_A 391 VQRVNADIVNKVVNLASRNAGFINKRFDG--------------V---LASELADPQLYKTFTDAAEVIGEAWESREFGKA 453 (560)
T ss_dssp HHHHHHHCCCCCTHHHHTTHHHHHHHSTT--------------B---CCSSCSCHHHHHHHHHTHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------------C---CCCccccHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence 76 788999999987554432110 000 0 011346999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHhhhhhccCC--ChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhcCCCCceeecCC
Q 002136 707 GRETYDFFWSDFADWYIEASKARLYRSE--YDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEALIVSPW 784 (961)
Q Consensus 707 ~~~i~~f~~~~~~n~Yle~~K~~l~~~~--~~~~~~~~~~~l~~vl~~~l~LL~Pf~P~itEeiw~~L~~~~~si~~~~w 784 (961)
++.+++|+ ++||+|++..|+|...++ +...+..+..+++.+++.+++||+|||||+||+||+.|+.. ..|
T Consensus 454 ~~~l~~l~--~~~n~Yi~~~kpw~l~k~~~~~~~~~~~~~~~~~~l~~~~~lL~P~~P~~aeei~~~L~~~------~~w 525 (560)
T 3h99_A 454 VREIMALA--DLANRYVDEQAPWVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNTE------LTW 525 (560)
T ss_dssp HHHHHHHH--HHHHHHHHHHCHHHHTTSTTCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTSC------CCT
T ss_pred HHHHHHHH--HHHHHHHHhcCchhhcCCcCcHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHcCCC------CCh
Confidence 99999997 789999999999865432 23345667788899999999999999999999999999742 567
Q ss_pred CCC
Q 002136 785 PQT 787 (961)
Q Consensus 785 P~~ 787 (961)
|..
T Consensus 526 ~~~ 528 (560)
T 3h99_A 526 DGI 528 (560)
T ss_dssp GGG
T ss_pred hhh
Confidence 654
No 11
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=100.00 E-value=7.7e-86 Score=787.24 Aligned_cols=483 Identities=20% Similarity=0.262 Sum_probs=407.1
Q ss_pred CCCCCCCCCCCCCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCC
Q 002136 78 QGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIK 157 (961)
Q Consensus 78 ~~~f~~~~~~~~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~ 157 (961)
...|.+....++++|+|++|+|||||.|||||+++++++|+++||+||+||+|++++|+|+||.+|+.+ +.+.|.+
T Consensus 14 ~~~~~~~~~~~~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~----a~~~g~~ 89 (564)
T 3kfl_A 14 AQTQGPGSMKKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEA----AAKQGVS 89 (564)
T ss_dssp ----------CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHH----HHHTTCC
T ss_pred hhhcCCccccCCCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHH----HHHcCCC
Confidence 456777666667899999999999999999999999999999999999999999999999999997554 4567887
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCceEEcCeeeecCCCCCc
Q 002136 158 RVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQT 237 (961)
Q Consensus 158 ~~~~~~~~f~~~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~w~p~~~t 237 (961)
+. +|++++.+.++++|++||+++|+ .+.|+++.|.+.|+++|.+|+++|+||++.+.++|||.|++
T Consensus 90 p~------------~~~~~~~~~~~~~~~~lgi~~D~--~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~ 155 (564)
T 3kfl_A 90 PM------------DFTTSVSSEFKQCFQEMNYDMNY--FIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDES 155 (564)
T ss_dssp HH------------HHHHHHHHHHHHHHHHTTCCCSE--EEETTSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTTE
T ss_pred HH------------HHHHHHHHHHHHHHHHcCCCCCc--cccCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEEecCCcCC
Confidence 64 35678999999999999999993 23499999999999999999999999999999999999999
Q ss_pred cccccccccccCCCeEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCchhhhhccCeeeccCCCCCeeeeeecCc
Q 002136 238 AVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKY 317 (961)
Q Consensus 238 ~lsd~Ev~~~e~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~ 317 (961)
++++.|+...
T Consensus 156 ~l~~~~~~~~---------------------------------------------------------------------- 165 (564)
T 3kfl_A 156 FLTAQNVADG---------------------------------------------------------------------- 165 (564)
T ss_dssp EECGGGEEEE----------------------------------------------------------------------
T ss_pred CCCHHHhccC----------------------------------------------------------------------
Confidence 9999877310
Q ss_pred cccCCCcceeEeCCCCChhHHHHHHHhCCCceeecCCCCcccccccccCCCchHHHHHHHHHHHHHcCCccccccccccC
Q 002136 318 VDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRV 397 (961)
Q Consensus 318 V~~~~GTG~v~~~Pah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~ 397 (961)
|| .+|..| +
T Consensus 166 ------------~~----------------------~~g~~c---~---------------------------------- 174 (564)
T 3kfl_A 166 ------------VD----------------------RDGKPC---K---------------------------------- 174 (564)
T ss_dssp ------------EC----------------------TTSCEE---E----------------------------------
T ss_pred ------------cC----------------------CCCCEe---c----------------------------------
Confidence 00 112111 0
Q ss_pred CcccCCCCceeeeeccceeeeccHHHHHHHHHHHcCCceeechhHHHHHHHHHh-cCCCceeee----ccCCCcccceEE
Q 002136 398 PRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS-NIKDWCISR----QLWWGHRIPVWY 472 (961)
Q Consensus 398 p~~~r~~~~v~~~~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~-~l~DW~ISR----q~~WG~pIP~~~ 472 (961)
.|.+||++++.+.++||||++++++++++++++++...+.|+..++++.+||+ +++|||||| |++||+|||.
T Consensus 175 -~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~i~P~~~~~~~~~wl~~gl~D~~ISR~~~~~~~WGipiP~-- 251 (564)
T 3kfl_A 175 -VSLESGHVVTWVEEENYMFRLSAFRERLLKYFHDHPNCIVPEFRRREVIKTVEKGLFDLSISRKRESVMNWSIPVPG-- 251 (564)
T ss_dssp -EETTTSCBCEEEEEEEEEECGGGGHHHHHHHHHHCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETT--
T ss_pred -cccCCCCccEEEecceeEEEHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCCCccccCcCCCCCCCCeecCC--
Confidence 01257999999999999999999999999999987778899999999999996 899999999 8999999992
Q ss_pred EcCCcccEEEecChHHHHHHHHhhcCCCcccccCCCceeeeecCCCccccccCC-CCCChh-----HH--hhcCCcceEe
Q 002136 473 IVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGW-PDVSAD-----DF--KKFYPTTMLE 544 (961)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvldtWf~S~l~~~~~~~~-p~~~~~-----~~--~~~~P~d~~~ 544 (961)
+ +.+|+||||||+++|++.++| |.++.. +| +++||+|+++
T Consensus 252 -----~---------------------------~~~v~yVWfDa~~~y~s~~~~~~~~~~~~~~~~~~~~~~~wp~dv~~ 299 (564)
T 3kfl_A 252 -----D---------------------------ERHCIYVWLDALFNYYTGALTRVATDGTETLDEDHHALNRWPADVHV 299 (564)
T ss_dssp -----E---------------------------EEEEECHHHHHHTHHHHHHHEEECTTSCEEECSSSTTTTCCSCSEEE
T ss_pred -----C---------------------------CCCEEEEeccCcHHHHHHhCccccccccccchhcchhhhcCccceEE
Confidence 0 247999999999999999998 876522 27 8999999999
Q ss_pred eecccccc----HHHHHHHHHhHhcCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHhCCC-C
Q 002136 545 TGHDILFF----WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-G 619 (961)
Q Consensus 545 ~G~Dil~f----w~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~~~-~ 619 (961)
+|+||++| |+++|+++ |..||++|++|||| +.+|+|||||+||||+|.+++++||+|++||||++..+ +
T Consensus 300 ~GkDii~FH~~~wpa~L~a~-----g~~~~~~v~~hg~v-~~~G~KMSKS~GNvV~p~d~i~~~G~DalR~~ll~~~~~~ 373 (564)
T 3kfl_A 300 VGKDILKFHAIYWPAFLMSA-----ELPLPERLVSHGWW-TKDHKKISKSLGNAFDPVEKAKEFGIDALKYFLMRESNFQ 373 (564)
T ss_dssp EEGGGHHHHHTHHHHHHHHT-----TCCCCSCEEEECCE-EETTEECCTTTTCCCCHHHHHHHHCHHHHHHHHHHHCCSS
T ss_pred EeecccchHHHHHHHHHHhC-----CCCCCcEEEEcccE-eeCCccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCcc
Confidence 99999998 88877654 34577999999999 69999999999999999999999999999999999555 9
Q ss_pred CccccCHHHHHH--HHHHHHHHHHHHHHHHhhCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHh
Q 002136 620 QDLSLSIERLTA--NKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTAS 697 (961)
Q Consensus 620 ~D~~f~~~~~~~--~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a 697 (961)
+|++|+++.+.+ +.++++++||+++++...+..+... ......+...|+|++++++.+++.+.++
T Consensus 374 ~D~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~~~g~-------------~p~~~~~~~~d~~ll~~l~~~~~~v~~a 440 (564)
T 3kfl_A 374 DDGDYSDKNMVARLNGELADTLGNLVSRCVAPKINVNGM-------------WPEPAEYSESDKTLIASLNNLAGTVDHY 440 (564)
T ss_dssp CCEECCHHHHHHHHHHTTTTTHHHHHHHHHCTTTSTTSB-------------CCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-------------CCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999987 5669999999998887655422110 0011245678999999999999999999
Q ss_pred hhcCChHHHHHHHHHHHHHhhhHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhcCC
Q 002136 698 YDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR 775 (961)
Q Consensus 698 ~e~~~f~~A~~~i~~f~~~~~~n~Yle~~K~~l~~~~~~~~~~~~~~~l~~vl~~~l~LL~Pf~P~itEeiw~~L~~~ 775 (961)
|++|+|+.|++.+++|+ +++|+|++..+||...+++.....+++.++..+++.+++||+|||||+||+||+.|+..
T Consensus 441 ~e~~~~~~a~~~i~~l~--~~~n~Y~~~~kpW~l~~~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~~ae~i~~~Lg~~ 516 (564)
T 3kfl_A 441 YCLPDIQHALIAIFDVL--RSLNAYVTENAPWKLVKMDTARLGTVLYVTMEGLRICTMFLQPVMPQKAKEIMDALGVP 516 (564)
T ss_dssp HHTTCHHHHHHHHHHHH--HHHHHHHHHHCHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHTCC
T ss_pred HHcccHHHHHHHHHHHH--HHHHHHHHhcCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHcCCC
Confidence 99999999999999998 58999999999975544455566778889999999999999999999999999999854
No 12
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=100.00 E-value=3.9e-85 Score=779.30 Aligned_cols=463 Identities=24% Similarity=0.353 Sum_probs=391.4
Q ss_pred CCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHH
Q 002136 89 SDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTK 168 (961)
Q Consensus 89 ~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~ 168 (961)
+++|+|+.|+|||||.|||||+++++++|+++||+||+||+|++++|+|+||.+|+..+ .+.|.++.
T Consensus 24 ~~~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a----~~~g~~~~--------- 90 (536)
T 4dlp_A 24 REKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSA----RKEGITPR--------- 90 (536)
T ss_dssp CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHH----HHHTSCHH---------
T ss_pred CCCEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHH----HHcCCCHH---------
Confidence 56899999999999999999999999999999999999999999999999999976544 45687764
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCceEEcCeeeecCCCCCcccccccccccc
Q 002136 169 RVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE 248 (961)
Q Consensus 169 ~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~w~p~~~t~lsd~Ev~~~e 248 (961)
++++++.+.++++|++||+++| ..+.|+++.|.+.++++|.+|+++|+||++.+.++|||.|++++++.|++..
T Consensus 91 ---~~~~~~~~~~~~~l~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~~- 164 (536)
T 4dlp_A 91 ---DLADRNTSAFRRMAEVLNSSND--DYIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGEEETEVR- 164 (536)
T ss_dssp ---HHHHHHHHHHHHHHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGCEEC-
T ss_pred ---HHHHHHHHHHHHHHHHcCCCCC--cceeCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcCcccCHHHhhcC-
Confidence 3457889999999999999999 2234899999999999999999999999999999999999999999877310
Q ss_pred CCCeEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCchhhhhccCeeeccCCCCCeeeeeecCccccCCCcceeE
Q 002136 249 EPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLK 328 (961)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~v~ 328 (961)
T Consensus 165 -------------------------------------------------------------------------------- 164 (536)
T 4dlp_A 165 -------------------------------------------------------------------------------- 164 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCCCCChhHHHHHHHhCCCceeecCCCCcccccccccCCCchHHHHHHHHHHHHHcCCccccccccccCCcccCCCCcee
Q 002136 329 ISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIE 408 (961)
Q Consensus 329 ~~Pah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~ 408 (961)
++|. .|++||++++
T Consensus 165 -------------------------~~g~-----------------------------------------~c~~~g~~~e 178 (536)
T 4dlp_A 165 -------------------------ADGV-----------------------------------------RYGPQGTPVE 178 (536)
T ss_dssp -------------------------TTSC-----------------------------------------EECTTSSBCE
T ss_pred -------------------------CCCC-----------------------------------------cccCCCCcce
Confidence 0111 4788999999
Q ss_pred eeeccceeeeccHHHHHHHHHHHcCCceeechhHHHHHHHHHh-cCCCceeeec-cCCCcccceEEEcCCcccEEEecCh
Q 002136 409 PLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS-NIKDWCISRQ-LWWGHRIPVWYIVGKEEEYIVARNA 486 (961)
Q Consensus 409 ~~~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~-~l~DW~ISRq-~~WG~pIP~~~~~~~~~~~~~~~~~ 486 (961)
++.++||||++++++++++++++++...+.|+..++.+.+|++ +++||||||| .+||||||. +
T Consensus 179 ~~~~~~~f~~l~~~~~~l~~~~~~~~~~i~P~~~~~~~~~~l~~~l~D~~ISR~~~~WGipiP~------~--------- 243 (536)
T 4dlp_A 179 WVEEESYFFRLSAYQDKLLDLYENNPGFIMPAERRNEIVSFVKSGLKDLSISRTTFDWGIPVPG------D--------- 243 (536)
T ss_dssp EEEEEEEEECGGGGHHHHHHHHHHCTTSEESHHHHHHHHHHHHTCCCCEECEEC--CCSCBCTT------C---------
T ss_pred EEeccceEEecHHHHHHHHHHHHhCCCccCcHHHHHHHHHHHhcCCCccCCccCCCcCCeeCCC------C---------
Confidence 9999999999999999999999988777899999999999996 8999999998 689999992 0
Q ss_pred HHHHHHHHhhcCCCcccccCCCceeeeecCCCccccccCCCCCChhHHhhcCCcceEeeecccccc----HHHHHHHHHh
Q 002136 487 DEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFF----WVARMVMMGI 562 (961)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~dvldtWf~S~l~~~~~~~~p~~~~~~~~~~~P~d~~~~G~Dil~f----w~~~~i~~~~ 562 (961)
+.+|+||||||+++|++++|||..+ .+|+++||.|++++|+||++| |+++|+++
T Consensus 244 -------------------~~~v~yvWfda~~~y~s~~~~~~~~-~~~~~~~p~dv~~~G~D~~~fh~~~~~a~l~a~-- 301 (536)
T 4dlp_A 244 -------------------EKHVMYVWVDALTNYITALGYPDTT-DERWAYWPANAHIIGKDISRFHAVYWPAFLMSA-- 301 (536)
T ss_dssp -------------------TTSEECHHHHHHHHHHHTTTTTCTT-SGGGGGCSCSEEEEEGGGHHHHHTHHHHHHHHT--
T ss_pred -------------------CCCceEEeeCCcHHHHHhcCCCCCc-hHHHhhCCcceEEeechHHHHHHHHHHHHHHHC--
Confidence 3479999999999999999999876 789999999999999999998 77776654
Q ss_pred HhcCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHhCCC-CCccccCHHHHHH--HHHHHHHH
Q 002136 563 EFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTA--NKAFTNKL 639 (961)
Q Consensus 563 ~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~~~-~~D~~f~~~~~~~--~~~~~nkl 639 (961)
|..||++|++||||+ .+|+|||||+||+|+|.+++++||+|++||||++..+ ++|++|+++.+.+ ++++++++
T Consensus 302 ---g~~~~~~v~~hg~v~-~~G~KMSKS~GNvi~p~d~i~~~GaDalR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l 377 (536)
T 4dlp_A 302 ---QLPLPKRVFAHGFLF-NRGEKMSKSVGNVIDPFELVERYGLDQLRYFLMREVPFGQDGSYSHEAIVNRTNADLANDL 377 (536)
T ss_dssp ---TCCCCSCEEEECCEE-C------------CCHHHHHHHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCC
T ss_pred ---CCCCCcEEEeeeeEe-eCCceecccCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 445779999999998 5999999999999999999999999999999999555 9999999999987 56799999
Q ss_pred HHHHHHHHh----hCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHH
Q 002136 640 WNAGKFILQ----NLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFW 715 (961)
Q Consensus 640 ~N~~rf~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~i~~f~~ 715 (961)
||+++++.. +..+..+ ....++..|+|++++++.+++.+.++|++|+|+.|++.+++|+
T Consensus 378 ~N~~~R~~~~~~~~~~~~~p----------------~~~~~~~~d~~ll~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~- 440 (536)
T 4dlp_A 378 GNLAQRSLSMIAKNCEGKVP----------------QPGAFSEADKAILDQADAALETARKAMDDQALHLALGAIFAVV- 440 (536)
T ss_dssp HHHHHHHHHHHHHHSTTBCC----------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhhcCCCCC----------------CcccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH-
Confidence 998766543 3322111 0124567899999999999999999999999999999999997
Q ss_pred HhhhHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhcCC
Q 002136 716 SDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR 775 (961)
Q Consensus 716 ~~~~n~Yle~~K~~l~~~~~~~~~~~~~~~l~~vl~~~l~LL~Pf~P~itEeiw~~L~~~ 775 (961)
++||+|++..|+|...+++...+.+++.++..+++.+++||+|||||+||+||+.|+..
T Consensus 441 -~~~n~Y~~~~k~w~l~~~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aeei~~~L~~~ 499 (536)
T 4dlp_A 441 -AEANRYFAGQEPWALRKTDPARMGTVLYVTAEVLRRVGIMVQPFIPQSAEKLLDILAVP 499 (536)
T ss_dssp -HHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHTTTCC
T ss_pred -HHHHHHHHhCCchhhcCCCHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHcCCC
Confidence 78999999999975543344456678889999999999999999999999999999854
No 13
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=100.00 E-value=1e-84 Score=775.24 Aligned_cols=466 Identities=23% Similarity=0.352 Sum_probs=395.7
Q ss_pred CCCCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHH
Q 002136 87 RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEF 166 (961)
Q Consensus 87 ~~~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f 166 (961)
.+++.|++++|||||||.||||||++++++|+++||+||+||+|++++|||+||+||+.+++ ++|+++.
T Consensus 9 ~~~~~~~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~----~~g~~~~------- 77 (524)
T 2x1l_A 9 GGSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAA----KEGIPAA------- 77 (524)
T ss_dssp --CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHH----HHTSCHH-------
T ss_pred CCCCCEEEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHH----HcCCCHH-------
Confidence 35778999999999999999999999999999999999999999999999999999766554 4577653
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCceEEcCeeeecCCCCCcccccccccc
Q 002136 167 TKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEY 246 (961)
Q Consensus 167 ~~~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~w~p~~~t~lsd~Ev~~ 246 (961)
+|++++.+.+++++++||+++| +.+.|+|+.|.+.++++|.+|+++|+||++.++|+|||.|+|++++.||++
T Consensus 78 -----~~~~~~~~~~~~~~~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~ 150 (524)
T 2x1l_A 78 -----ELARRNSDVFQRLQEKLNISFD--RFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETTE 150 (524)
T ss_dssp -----HHHHHHHHHHHHHHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEE
T ss_pred -----HHHHHHHHHHHHHHHHcCCcCC--CCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHHHhcc
Confidence 3567889999999999999988 223499999999999999999999999999999999999999999987731
Q ss_pred ccCCCeEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCchhhhhccCeeeccCCCCCeeeeeecCccccCCCcce
Q 002136 247 SEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGV 326 (961)
Q Consensus 247 ~e~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~ 326 (961)
+ +
T Consensus 151 ------------------------------------------------------------g----------------~-- 152 (524)
T 2x1l_A 151 ------------------------------------------------------------Q----------------P-- 152 (524)
T ss_dssp ------------------------------------------------------------C----------------T--
T ss_pred ------------------------------------------------------------C----------------C--
Confidence 0 0
Q ss_pred eEeCCCCChhHHHHHHHhCCCceeecCCCCcccccccccCCCchHHHHHHHHHHHHHcCCccccccccccCCccc-CCCC
Q 002136 327 LKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQ-RGGE 405 (961)
Q Consensus 327 v~~~Pah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~-r~~~ 405 (961)
+| +.|+ |||+
T Consensus 153 ----------------------------~G-----------------------------------------~~c~~~~g~ 163 (524)
T 2x1l_A 153 ----------------------------DG-----------------------------------------TRIATETGA 163 (524)
T ss_dssp ----------------------------TS-----------------------------------------CEEETTTCC
T ss_pred ----------------------------CC-----------------------------------------CccccccCC
Confidence 01 1477 9999
Q ss_pred ceeeeeccceeeeccHHHHHHHHHHHcCCceeechhHHHHHHHHH-hcCCCceeeecc-CCCcccceEEEcCCcccEEEe
Q 002136 406 VIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWL-SNIKDWCISRQL-WWGHRIPVWYIVGKEEEYIVA 483 (961)
Q Consensus 406 ~v~~~~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl-~~l~DW~ISRq~-~WG~pIP~~~~~~~~~~~~~~ 483 (961)
+++++.++|||+++++++++++++++++...+.|+..++.+.+|+ ++++|||||||| +||+||| |.
T Consensus 164 ~v~~~~~~qwF~~l~~~~~~l~~~~~~~~~~i~p~~~~~~~~~~~~~~l~Dw~iSRqr~~WG~~iP-~~----------- 231 (524)
T 2x1l_A 164 PVTWTEEQTYFFRLSAYTDRLLALYEEHPEFIGPDARRNEIVSFVSGGLKDLSISRTTFDWGVPVP-DH----------- 231 (524)
T ss_dssp BEEEEEEEEEEECGGGSHHHHHHHHHHCGGGEESHHHHHHHHHHHTTCCCCEECEESSCCSSCEET-TE-----------
T ss_pred cceEEecCCeEeeHHHHHHHHHHHHHhCCCeeCCHHHHHHHHHHHHcCCcccceECCCCCcCccCC-CC-----------
Confidence 999999999999999999999999987666689999999999999 589999999997 5999999 21
Q ss_pred cChHHHHHHHHhhcCCCcccccCCCceeeeecCCCccccccCCCCCChhHHhhcCCcceEeeecccccc----HHHHHHH
Q 002136 484 RNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFF----WVARMVM 559 (961)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~dvldtWf~S~l~~~~~~~~p~~~~~~~~~~~P~d~~~~G~Dil~f----w~~~~i~ 559 (961)
+.+|+||||||+++|++.+|||.+....|+++||.|++++|+||++| |++.+++
T Consensus 232 ----------------------~~~~~yvWfds~~~~~~~~g~p~~~~~~~~~~~p~di~~~G~D~~~fh~~~~~a~l~~ 289 (524)
T 2x1l_A 232 ----------------------PDHVMYVWVDALTNYLTGVGFPDTESESFRRYWPADLHMIGKDIIRFHTVYWPAFLMS 289 (524)
T ss_dssp ----------------------EEEEECHHHHHHTHHHHTTTTTCTTSHHHHHHCSCSEEEEEGGGHHHHHTHHHHHHHH
T ss_pred ----------------------CCCEEEEecCCchHHHHHcCCCCCchHHHHhhCCCeEEEEeechhHhHHHHHHHHHHH
Confidence 12589999999999999999998764689999999999999999988 5554433
Q ss_pred HHhHhcCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHhCCC-CCccccCHHHHHHH--HHHH
Q 002136 560 MGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTAN--KAFT 636 (961)
Q Consensus 560 ~~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~~~-~~D~~f~~~~~~~~--~~~~ 636 (961)
+ |..||+++++||||++ +|+|||||+||+|+|.|+|++||+|++|||+++.++ ++|++|+++.+.+. ++++
T Consensus 290 ~-----g~~~~~~v~~hG~v~~-~G~KMSKS~GN~v~p~d~i~~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~ 363 (524)
T 2x1l_A 290 A-----GLPLPKRIFAHGWLLN-RGEKMSKSIGNVVDPVNLVDTFGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLA 363 (524)
T ss_dssp H-----TCCCCSCEEEECCEEE-CSCSEETTTEESSCHHHHHHHHCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHCCC
T ss_pred C-----CCCCCcEEEECcEEEe-CCcccCCcCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHH
Confidence 2 4567899999999995 999999999999999999999999999999998545 99999999999875 3478
Q ss_pred HHHHHHHHHHHhh----CCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHH
Q 002136 637 NKLWNAGKFILQN----LPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYD 712 (961)
Q Consensus 637 nkl~N~~rf~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~i~~ 712 (961)
|++||+++++... ..+..+ ....+...|+|++++++.+++.+.++|++|+|+.|++.+++
T Consensus 364 n~l~n~~~r~~~~~~~~~~~~~~----------------~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~ 427 (524)
T 2x1l_A 364 NELGNLAQRSLSMVAKNLGAAVP----------------DPGEFTDEDTALLAAADALLERVREHFDVPAMHLALEAIWS 427 (524)
T ss_dssp CCCHHHHHHHHHHHHHHSTTBCC----------------CCCCCCHHHHHHHHHHHTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCC----------------CccccchhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8899987765432 111000 01234567999999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHhhhhhccCC----ChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhcCC
Q 002136 713 FFWSDFADWYIEASKARLYRSE----YDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR 775 (961)
Q Consensus 713 f~~~~~~n~Yle~~K~~l~~~~----~~~~~~~~~~~l~~vl~~~l~LL~Pf~P~itEeiw~~L~~~ 775 (961)
|+ +.+|+|++..|+|....+ +....++++.+++++++.+++||+|||||+||+||+.|+..
T Consensus 428 l~--~~~n~y~~~~k~w~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~ll~P~~P~~aeei~~~L~~~ 492 (524)
T 2x1l_A 428 VL--GAANRYFSAQEPWVLRKSDAAEDQQRFRTVLYTTLEVVRIASLLLQPVMPESTAKLLDLLGQP 492 (524)
T ss_dssp HH--HHHHHHHHHHCHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTCC
T ss_pred HH--HHHHHHHHhcCChhhhcCccccCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCCC
Confidence 98 479999999999754332 12234456778889999999999999999999999999864
No 14
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=100.00 E-value=1.5e-83 Score=761.60 Aligned_cols=458 Identities=24% Similarity=0.321 Sum_probs=390.3
Q ss_pred CCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHH
Q 002136 89 SDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTK 168 (961)
Q Consensus 89 ~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~ 168 (961)
+++|+|+.|||||||.||||||++++++|+++||+||+||+|++++|||+||++|+.++ .++|+++.
T Consensus 2 ~~~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a----~~~g~~~~--------- 68 (500)
T 2d5b_A 2 EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAA----QAAGEDPK--------- 68 (500)
T ss_dssp CCEEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHH----HHHTSCHH---------
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHH----HHcCCCHH---------
Confidence 35799999999999999999999999999999999999999999999999999976554 44587754
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCceEEcCeeeecCCCCCcccccccccccc
Q 002136 169 RVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE 248 (961)
Q Consensus 169 ~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~w~p~~~t~lsd~Ev~~~e 248 (961)
+|++++.+.++++|++||+++|+ .+.|+|+.|.+.++++|.+|+++|+||++++.++|||.|+|++++.++.
T Consensus 69 ---~~~~~~~~~~~~~~~~lgi~~d~--~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l~--- 140 (500)
T 2d5b_A 69 ---AFVDRVSGRFKRAWDLLGIAYDD--FIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELV--- 140 (500)
T ss_dssp ---HHHHHHHHHHHHHHHHTTCCCSE--EEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTSB---
T ss_pred ---HHHHHHHHHHHHHHHHhCCcCCC--CcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCcccCchhcc---
Confidence 35678999999999999998884 4569999999999999999999999999999999999999998875431
Q ss_pred CCCeEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCchhhhhccCeeeccCCCCCeeeeeecCccccCCCcceeE
Q 002136 249 EPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLK 328 (961)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~v~ 328 (961)
T Consensus 141 -------------------------------------------------------------------------------- 140 (500)
T 2d5b_A 141 -------------------------------------------------------------------------------- 140 (500)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCCCCChhHHHHHHHhCCCceeecCCCCcccccccccCCCchHHHHHHHHHHHHHcCCccccccccccCCcccCCCCcee
Q 002136 329 ISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIE 408 (961)
Q Consensus 329 ~~Pah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~ 408 (961)
.+.|+|||++++
T Consensus 141 --------------------------------------------------------------------~g~c~~~~~~v~ 152 (500)
T 2d5b_A 141 --------------------------------------------------------------------EGLCPIHGRPVE 152 (500)
T ss_dssp --------------------------------------------------------------------TTBCTTTCSBCE
T ss_pred --------------------------------------------------------------------CCcCCCCCCeee
Confidence 024999999999
Q ss_pred eeeccceeeeccHHHHHHHHHHHcCCceeechhHHHHHHHHH-hcCCCceeee--cc-CCCcccceEEEcCCcccEEEec
Q 002136 409 PLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWL-SNIKDWCISR--QL-WWGHRIPVWYIVGKEEEYIVAR 484 (961)
Q Consensus 409 ~~~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl-~~l~DW~ISR--q~-~WG~pIP~~~~~~~~~~~~~~~ 484 (961)
.+.++|||++++++++.++++++++...+.|+..++.+.+|+ ++++|||||| |+ +||+|||. +
T Consensus 153 ~~~~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~iSRp~~~~~WG~piP~--~----------- 219 (500)
T 2d5b_A 153 RRKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPW--D----------- 219 (500)
T ss_dssp EEEEEEEEECGGGGHHHHHHHHHTCTTSEESHHHHHHHHHHHTSCCCCEECEEETTTCCSSCEETT--E-----------
T ss_pred EEecCceEEEcHHHHHHHHHHHHhCCCeeCCHHHHHHHHHHHhcCCCCeecccccccccCccccCC--C-----------
Confidence 999999999999999999999987666678999999999999 5789999999 65 79999993 1
Q ss_pred ChHHHHHHHHhhcCCCcccccCCCceeeeecCCCccccccCCCCCChhHHhhcCCcceEeeeccccc----cHHHHHHHH
Q 002136 485 NADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILF----FWVARMVMM 560 (961)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~dvldtWf~S~l~~~~~~~~p~~~~~~~~~~~P~d~~~~G~Dil~----fw~~~~i~~ 560 (961)
+++|+||||||+++|++.+|||.+. +|+++||.|++++|+||++ ||++++.++
T Consensus 220 ---------------------~~~v~~vWfds~~~y~~~~g~~~~~--~~~~~~p~di~~~G~D~~~fh~~~~~a~~~~~ 276 (500)
T 2d5b_A 220 ---------------------ENHVTFVWFDALLNYVSALDYPEGE--AYRTFWPHAWHLIGKDILKPHAVFWPTMLKAA 276 (500)
T ss_dssp ---------------------EEEEECHHHHHHTHHHHTTTTTTCH--HHHHHGGGEEEEEEGGGHHHHHTHHHHHHHHH
T ss_pred ---------------------CCCeeEEccccchhhHHHcCCCCCc--hHHHcCCCeEEEEeechhhhHHHHHHHHHHHc
Confidence 1368999999999999999999763 3888999999999999999 566655443
Q ss_pred HhHhcCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHhCCC-CCccccCHHHHHH--HHHHHH
Q 002136 561 GIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTA--NKAFTN 637 (961)
Q Consensus 561 ~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~~~-~~D~~f~~~~~~~--~~~~~n 637 (961)
|..||+++++||||++.+|+|||||+||+|+|.|++++||+|++||||++.++ ++|++|+++.+.+ ++++++
T Consensus 277 -----g~~~~~~v~~~G~v~~~~G~KMSKS~GN~i~p~d~i~~~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~~~l~~ 351 (500)
T 2d5b_A 277 -----GIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLAD 351 (500)
T ss_dssp -----TCCCCSEEEEECCEECTTSSCCCTTTTCCCCHHHHHHHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCC
T ss_pred -----CCCCCcEEEECceEEeCCCCcccccCCCCCCHHHHHHhcCcHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHH
Confidence 45678999999999977999999999999999999999999999999998544 9999999999987 456888
Q ss_pred HHHHHHHHHHhhCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHh
Q 002136 638 KLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSD 717 (961)
Q Consensus 638 kl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~i~~f~~~~ 717 (961)
++||+..++......... . ... ...++|++++++.+++.+.++|++|+|+.|++.+++|+ +
T Consensus 352 ~l~n~~~r~~~~~~~~~~-------------~--~~~--~~~~~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~--~ 412 (500)
T 2d5b_A 352 DLGNLVQRTRAMLFRFAE-------------G--RIP--EPVAGEELAEGTGLAGRLRPLVRELKFHVALEEAMAYV--K 412 (500)
T ss_dssp CCHHHHHHHHHHHHHHST-------------T--BCC--CCCCCGGGGGGGGHHHHHHHHHHTTCHHHHHHHHHHHH--H
T ss_pred HHHHHHHHHHHHHHHhcC-------------C--CCC--chhHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--H
Confidence 999986554332100000 0 000 11248999999999999999999999999999999998 5
Q ss_pred hhHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhcCC
Q 002136 718 FADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR 775 (961)
Q Consensus 718 ~~n~Yle~~K~~l~~~~~~~~~~~~~~~l~~vl~~~l~LL~Pf~P~itEeiw~~L~~~ 775 (961)
.+|+|++..|+|...+++.+..+++..+++.+++.+++||+|||||+||+||+.|+..
T Consensus 413 ~~n~y~~~~k~w~~~~~~~~~~~~~~~~l~~~l~~~~~ll~P~~P~~aeei~~~l~~~ 470 (500)
T 2d5b_A 413 ALNRYINEKKPWELFKKEPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGLK 470 (500)
T ss_dssp HHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTCC
T ss_pred HHHHHHHhcCchhhccCcHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHcCCC
Confidence 8999999999986543233344567788899999999999999999999999999864
No 15
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=100.00 E-value=2.4e-81 Score=741.43 Aligned_cols=454 Identities=22% Similarity=0.289 Sum_probs=358.0
Q ss_pred CCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHH
Q 002136 89 SDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTK 168 (961)
Q Consensus 89 ~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~ 168 (961)
+++|+|+.|||||||.||||||++++++|+++||+||+||+|++++||||||+||+.++ .++|+++.
T Consensus 4 ~~~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a----~~~g~~~~--------- 70 (497)
T 2csx_A 4 MKKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKA----EELGISPK--------- 70 (497)
T ss_dssp SCEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHH----HHSSSCHH---------
T ss_pred CCcEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHH----HHcCCCHH---------
Confidence 47899999999999999999999999999999999999999999999999999976554 45687754
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCceEEcCeeeecCCCCCcccccccccccc
Q 002136 169 RVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE 248 (961)
Q Consensus 169 ~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~w~p~~~t~lsd~Ev~~~e 248 (961)
++++++.+.|+++|++||+++|+ .+.|+|+.|.+.++++|.+|+++|+||++.++++|||.|+|++++.|+.
T Consensus 71 ---~~~~~~~~~~~~~~~~lgi~~d~--~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~--- 142 (497)
T 2csx_A 71 ---ELVDRNAERFKKLWEFLKIEYTK--FIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELA--- 142 (497)
T ss_dssp ---HHHHHHHHHHHHHHHHTTCCCSE--EEETTSHHHHHHHHHHHHHHHHTTCEEEEEC---------------------
T ss_pred ---HHHHHHHHHHHHHHHHhCCcCCC--CccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEccHHHhc---
Confidence 34578999999999999998773 4569999999999999999999999999999999999999998885541
Q ss_pred CCCeEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCchhhhhccCeeeccCCCCCeeeeeecCccccCCCcceeE
Q 002136 249 EPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLK 328 (961)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~v~ 328 (961)
.
T Consensus 143 ---------------------------------------------------------~---------------------- 143 (497)
T 2csx_A 143 ---------------------------------------------------------E---------------------- 143 (497)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------------------------------------c----------------------
Confidence 0
Q ss_pred eCCCCChhHHHHHHHhCCCceeecCCCCcccccccccCCCchHHHHHHHHHHHHHcCCccccccccccCCcccCCCCcee
Q 002136 329 ISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIE 408 (961)
Q Consensus 329 ~~Pah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~ 408 (961)
.+.|+|||.+++
T Consensus 144 --------------------------------------------------------------------~~~c~~~~~~~~ 155 (497)
T 2csx_A 144 --------------------------------------------------------------------DHTCPIHQKKCE 155 (497)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------CCCCCCCCCCCe
Confidence 035899999999
Q ss_pred eeeccceeeeccHHHHHHHHHHHcCCceeechhHHHHHHHHHh-cCCCceeee--cc-CCCcccceEEEcCCcccEEEec
Q 002136 409 PLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS-NIKDWCISR--QL-WWGHRIPVWYIVGKEEEYIVAR 484 (961)
Q Consensus 409 ~~~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~-~l~DW~ISR--q~-~WG~pIP~~~~~~~~~~~~~~~ 484 (961)
.+.++|||+++++++++++++++++...+.|+..++.+.+|++ +++|||||| |+ +||+|||..
T Consensus 156 ~~~~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~Dw~isR~~~~~~WG~~iP~~------------- 222 (497)
T 2csx_A 156 YIKEPSYFFRLSKYQDKLLELYEKNPEFIQPDYRRNEIISFVKQGLKDLSVTRPRSRVKWGIPVPFD------------- 222 (497)
T ss_dssp --CCEEEEECTTSSHHHHHHHHHHCTTSBCSHHHHHHHHHHHHHCCCCEECEEETTTCCSSEEETTE-------------
T ss_pred EEecCceEEEcHHHHHHHHHHHHhCCCeeCcHHHHHHHHHHHhcCCccccccccCCCCCCceecCCC-------------
Confidence 9999999999999999999999987777889999999999995 799999999 65 799999941
Q ss_pred ChHHHHHHHHhhcCCCcccccCCCceeeeecCCCccccccCCCCCChhHHhhcCCcceEeeeccccc----cHHHHHHHH
Q 002136 485 NADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILF----FWVARMVMM 560 (961)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~dvldtWf~S~l~~~~~~~~p~~~~~~~~~~~P~d~~~~G~Dil~----fw~~~~i~~ 560 (961)
+.+++||||||++.|.+.+ +.+ .+ ++||.|++++|+||++ +|++.+.++
T Consensus 223 ---------------------~~~~i~vW~ds~~~~~s~~--~~~--~~--~~~p~di~~~G~D~~~~H~~~~~a~l~~~ 275 (497)
T 2csx_A 223 ---------------------PEHTIYVWFDALFNYISAL--EDK--VE--IYWPADLHLVGKDILRFHTVYWPAFLMSL 275 (497)
T ss_dssp ---------------------EEEEECSHHHHHTHHHHTT--TTT--HH--HHCSCSCEEEEGGGHHHHHTHHHHHHHHH
T ss_pred ---------------------CCceEEEecccchhhcccC--CCc--ch--hhCCceEEEeecchhHhHHHHHHHHHHHc
Confidence 1258899999998887765 221 22 5679999999999999 566654332
Q ss_pred HhHhcCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHhCCC-CCccccCHHHHHHH--HHHHH
Q 002136 561 GIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTAN--KAFTN 637 (961)
Q Consensus 561 ~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~~~-~~D~~f~~~~~~~~--~~~~n 637 (961)
|..||+++++||||++ +|+|||||+||+|+|.|++++||+|++||||++.++ ++|++|+++.+.+. +++++
T Consensus 276 -----g~~~~~~~~~~G~v~~-~G~KMSKS~GN~i~~~dli~~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~~ 349 (497)
T 2csx_A 276 -----GYELPKKVFAHGWWTV-EGKKMSKTLGNVVDPYEVVQEYGLDEVRYFLLREVPFGQDGDFSKKAILNRINGELAN 349 (497)
T ss_dssp -----TCCCCSCEEEECCEES-SSSBCCTTTTCCCCHHHHHHHHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHTCCC
T ss_pred -----CCCCCcEEEECcEEEe-CCceeCCcCCCCCCHHHHHHHCCcHHHHHHHHhcCCcccCCCCChHHHHHHHHHHHHH
Confidence 5668899999999995 999999999999999999999999999999998555 99999999999873 45788
Q ss_pred HHHHHHHHHHhhCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHh
Q 002136 638 KLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSD 717 (961)
Q Consensus 638 kl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~i~~f~~~~ 717 (961)
++||++.++...+..... . .. . +..|+|++++++.+++.+.++|++|+|+.|++.+++|+ +
T Consensus 350 ~l~n~~~R~~~~~~~~~~-------------~--~~-~-~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~--~ 410 (497)
T 2csx_A 350 EIGNLYSRVVNMAHKFLG-------------G--EV-S-GARDEEYAKIAQESIKNYENYMEKVNFYKAIEEILKFT--S 410 (497)
T ss_dssp CCHHHHHHHHHHHHHHST-------------T--CB-C-CCCCTTHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH--H
T ss_pred HHHHHHHHHHHHHHHhcC-------------C--CC-C-chhHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--H
Confidence 889987665443210000 0 00 1 34689999999999999999999999999999999998 5
Q ss_pred hhHHHHHHhhhhhccC-CChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhcCC
Q 002136 718 FADWYIEASKARLYRS-EYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR 775 (961)
Q Consensus 718 ~~n~Yle~~K~~l~~~-~~~~~~~~~~~~l~~vl~~~l~LL~Pf~P~itEeiw~~L~~~ 775 (961)
.+|+|++..|+|...+ .+....+++..+++++++.+++||+|||||+|||||+.|+..
T Consensus 411 ~~n~y~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ll~P~~P~~aeei~~~L~~~ 469 (497)
T 2csx_A 411 YLNKYVDEKQPWALNKERKKEELQKVLYALVDGLFVLTHLLYPITPNKMKEALQMLGEK 469 (497)
T ss_dssp HHHHHHHHHCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTCS
T ss_pred HHHHHHHhcCchhhcccccHHHHHHHHHHHHHHHHHHHHHhcCccCHHHHHHHHHcCCC
Confidence 7999999999985543 233345567788999999999999999999999999999864
No 16
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=6.9e-44 Score=408.22 Aligned_cols=346 Identities=20% Similarity=0.237 Sum_probs=255.4
Q ss_pred CCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHH
Q 002136 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKR 169 (961)
Q Consensus 90 ~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~ 169 (961)
.+..+....|+|+|.+|||||+++++.|+++||+||+||+|.|++|+|+||.+|+. .+++.|.+
T Consensus 24 ~~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~----~A~~~g~~------------ 87 (462)
T 3tqo_A 24 GKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIK----RAGENKES------------ 87 (462)
T ss_dssp TEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHH----HHHHTTSC------------
T ss_pred CeEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHH----HHHHcCCC------------
Confidence 34666667799999999999999999999999999999999999999999988544 44567876
Q ss_pred HHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCceEEc-CeeeecCCCCCcccccccccccc
Q 002136 170 VWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG-SYMVNWSPNLQTAVSDLEVEYSE 248 (961)
Q Consensus 170 ~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~-~~~v~w~p~~~t~lsd~Ev~~~e 248 (961)
+++|++++.+.+.+++++||++.||..++.| +|...++++|.+|+++|++|++ ...|+||+.+-.
T Consensus 88 ~~e~a~~~~~~f~~d~~~LgI~~d~~~praT---e~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~~~----------- 153 (462)
T 3tqo_A 88 PAALAERFIQILHEDEKALRVLSPDQEPRAT---QYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRFK----------- 153 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCSBCCBGG---GCHHHHHHHHHHHHHHTSEEECTTSCEEECTTTCT-----------
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCccccChh---hHHHHHHHHHHHHHHCCCEEEecCCcEEecccccc-----------
Confidence 4566789999999999999999998776665 8999999999999999999999 789999987531
Q ss_pred CCCeEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCchhhhhccCeeeccCCCCCeeeeeecCccccCCCcceeE
Q 002136 249 EPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLK 328 (961)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~v~ 328 (961)
.|..|.|+... ++..|+.+ .
T Consensus 154 ------------------------------------------~yg~Ls~~~~~-----------------~~~~g~r~-~ 173 (462)
T 3tqo_A 154 ------------------------------------------DYGKLSHRHLD-----------------ELQAGARV-E 173 (462)
T ss_dssp ------------------------------------------TTTTTTTCSCC---------------------------
T ss_pred ------------------------------------------ccccccCCChH-----------------HhhccCcc-c
Confidence 11111111000 00001100 0
Q ss_pred eC-CCCChhHHHHHHHhCCCceeecCCCCcccccccccCCCchHHHHHHHHHHHHHcCCccccccccccCCcccCCCCce
Q 002136 329 IS-PGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVI 407 (961)
Q Consensus 329 ~~-Pah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v 407 (961)
.. --.+|.||.++
T Consensus 174 ~~~~K~~p~DF~LW------------------------------------------------------------------ 187 (462)
T 3tqo_A 174 VSDSKRDPLDFVLW------------------------------------------------------------------ 187 (462)
T ss_dssp ---CCSSTTCEEEE------------------------------------------------------------------
T ss_pred cccccCCcccccee------------------------------------------------------------------
Confidence 00 00011111111
Q ss_pred eeeeccceeeeccHHHHHHHHHHHcCCceeechhHHHHHHHHHhcCCCceeeeccCCCcccceEEEcCCcccEEEecChH
Q 002136 408 EPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNAD 487 (961)
Q Consensus 408 ~~~~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~ 487 (961)
.+.. .+-.-|- -.||---|-|++++.
T Consensus 188 ------------------------------K~~k---------~~ep~W~----spwG~GrPGWHiEcs----------- 213 (462)
T 3tqo_A 188 ------------------------------KKAK---------PGEPKWD----SPWGEGRPGWHIECS----------- 213 (462)
T ss_dssp ------------------------------EECC---------TTSCCBC----CTTCSEEECHHHHHH-----------
T ss_pred ------------------------------eecC---------CCCCccc----CCCCCCCCCCceehH-----------
Confidence 0000 0011232 347877787876430
Q ss_pred HHHHHHHhhcCCCcccccCCCceeeeecCCCccccccCCCCCChhHHhhcCCcceEeeeccccccHHHHHHHHHhHhcCC
Q 002136 488 EALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGS 567 (961)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~dvldtWf~S~l~~~~~~~~p~~~~~~~~~~~P~d~~~~G~Dil~fw~~~~i~~~~~l~~~ 567 (961)
. +....+| -+.|++.+|.|++|+|+.++++.+.+++|+
T Consensus 214 -----------------------------a-m~~~~lG------------~~~dih~gG~Dl~FpHheneiaqs~a~~g~ 251 (462)
T 3tqo_A 214 -----------------------------A-MSSSILG------------QPFDIHGGGLDLKFPHHENEIAQSEAGEEK 251 (462)
T ss_dssp -----------------------------H-HHHHHHC------------SSEEEEEEEGGGTTTHHHHHHHHHHHHHSS
T ss_pred -----------------------------H-HHHHhcC------------CCeEEEccccccccHHHHhHHHHHHHHcCC
Confidence 0 0000111 257899999999999999999999999998
Q ss_pred CCceEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHhCCCCCccccCHHHHHHHHHHHHHHHHHHHHHH
Q 002136 568 VPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFIL 647 (961)
Q Consensus 568 ~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~~~~~D~~f~~~~~~~~~~~~nkl~N~~rf~~ 647 (961)
||.++++|+.+++.+|+|||||+||+|+|.+++++||+|++||||++..+.++++|+.+.+.+.++++++|||+++++.
T Consensus 252 -p~~~~w~H~g~v~~~G~KMSKSlGN~i~~~dll~~~g~dalR~~lls~~yr~~l~fs~~~l~~a~~~l~rl~~~~~~~~ 330 (462)
T 3tqo_A 252 -PFVKLWMHAGLLEINKEKMSKSLGNIISIREALKESDVEVLRYFLLSGHYRNPLSYSKENLENGRLALERFYLALRGLP 330 (462)
T ss_dssp -CCEEEEEEECCEEETTEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHSCTTSCEEECHHHHHHHHHHHHHHHHHHTTCC
T ss_pred -CcceEEEEccEEecCCcCccccCCCcccHHHHHhhcChHHhhhhhccCCCCCCcCcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999987778999999999999999999999999999999999987799999999999999999999999886542
Q ss_pred hhCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhhh-cCChHHHHHHHHHHHHHhhhHHHH
Q 002136 648 QNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYD-KYFFGDVGRETYDFFWSDFADWYI 723 (961)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e-~~~f~~A~~~i~~f~~~~~~n~Yl 723 (961)
.. .. + .+..+...+.++|+ .|+...|+..|++++ ...|.++
T Consensus 331 ~~----~~------------------------~-----~~~~~~~~~~~a~~dD~nt~~a~~~l~~~~--~~~n~~~ 372 (462)
T 3tqo_A 331 VV----NH------------------------E-----KTSSYTDRFYEAMDDDFNTPIAFALLFEMV--REINRFR 372 (462)
T ss_dssp C---------------------------------------CHHHHHHHHHHTBTCCHHHHHHHHHHHH--HHHHHHH
T ss_pred hc----cc------------------------h-----hHHHHHHHHHHHHHhccChHHHHHHHHHHH--HHHhhhh
Confidence 10 00 0 13355678888886 799999999999997 3455554
No 17
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=100.00 E-value=7.9e-44 Score=408.88 Aligned_cols=350 Identities=16% Similarity=0.189 Sum_probs=223.4
Q ss_pred EEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeec---------CCC-CCCCchHHHHHHHHHHHcCCCcccc
Q 002136 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWL---------PGT-DHAGIATQLVVEKMLAAEGIKRVEL 161 (961)
Q Consensus 92 f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~---------~G~-D~~Gl~~q~~vek~l~~~g~~~~~~ 161 (961)
..+..++|+|+|.+|||||+++++.|+++||+||+||+|.|+ +|| |+||.+|+. .++++|+++
T Consensus 43 v~~YvcgPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI~~----~A~~~g~~~--- 115 (501)
T 3sp1_A 43 VKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAK----TAREKGLTV--- 115 (501)
T ss_dssp EEEEECCCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC-----------------------CCH---
T ss_pred ceEEeCCCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCCCCCCcHHHH----HHHHcCCCH---
Confidence 444455688889999999999999999999999999999999 455 888988544 445668764
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCceEEcCeeeecCCCCCccccc
Q 002136 162 SRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSD 241 (961)
Q Consensus 162 ~~~~f~~~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~w~p~~~t~lsd 241 (961)
++|+++|.+.++++|++||++.||.. +.+++|...++++|.+|+++|+||++++.|+||+.+-
T Consensus 116 ---------~e~a~~~~~~f~~d~~~Lgi~~d~~~---~~~t~hi~~v~~~i~~L~~kG~aY~~~g~Vyf~v~~f----- 178 (501)
T 3sp1_A 116 ---------YEISEFFTEAFFNDCRKLNIVYPDKV---LVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSCF----- 178 (501)
T ss_dssp ---------HHHHHHHHHHHHHHHHHTTCCCCSEE---EEGGGCHHHHHHHHHHHHHTTCEEEETTEEEECGGGC-----
T ss_pred ---------HHHHHHHHHHHHHHHHHcCCCCCCcc---cCcchHHHHHHHHHHHHHHCCCEEEeCCcEEecCCcc-----
Confidence 45678999999999999999999844 5678999999999999999999999999999998641
Q ss_pred cccccccCCCeEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCchhhhhccCeeeccCCCCCeeeeeecCccccC
Q 002136 242 LEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKE 321 (961)
Q Consensus 242 ~Ev~~~e~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~ 321 (961)
+.|.+|.|..+... +.
T Consensus 179 ------------------------------------------------~~yG~ls~~~~~~~----------------~~ 194 (501)
T 3sp1_A 179 ------------------------------------------------KSYGEMAGIDLIDK----------------DM 194 (501)
T ss_dssp ------------------------------------------------TTTTTTTC------------------------
T ss_pred ------------------------------------------------CCccccCCCChhhh----------------hc
Confidence 01111111110000 00
Q ss_pred CCcceeEeCC-CCChhHHHHHHHhCCCceeecCCCCcccccccccCCCchHHHHHHHHHHHHHcCCccccccccccCCcc
Q 002136 322 FGTGVLKISP-GHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRS 400 (961)
Q Consensus 322 ~GTG~v~~~P-ah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~ 400 (961)
.|..+ -..+ -.+|.||
T Consensus 195 ~g~r~-~~~~~K~~p~Df-------------------------------------------------------------- 211 (501)
T 3sp1_A 195 TLPRV-DVDKFKRNKTDF-------------------------------------------------------------- 211 (501)
T ss_dssp ----------CCSSTTCE--------------------------------------------------------------
T ss_pred cCCcc-CcccccCCchhh--------------------------------------------------------------
Confidence 00000 0000 0000000
Q ss_pred cCCCCceeeeeccceeeeccHHHHHHHHHHHcCCceeechhHHHHHHHHHhcCCCceeeeccCCCcccceEEEcCCcccE
Q 002136 401 QRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEY 480 (961)
Q Consensus 401 ~r~~~~v~~~~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~pIP~~~~~~~~~~~ 480 (961)
. -| ... |..-. +..-| .-.||.--|-|++++
T Consensus 212 ---------~---lW-k~~-------------------p~~~~--------~~~~W----~spwG~GrPGWhiEc----- 242 (501)
T 3sp1_A 212 ---------V---LW-FTN-------------------SKFKD--------QEMKW----DSPWGFGYPSWHLEC----- 242 (501)
T ss_dssp ---------E---EE-EEC-------------------CC-------------CCB----CCTTCSEEECHHHHH-----
T ss_pred ---------H---hc-CCC-------------------CCCCC--------CCcee----cCCCCCCCCCchHHH-----
Confidence 0 01 000 00000 00112 234777777666532
Q ss_pred EEecChHHHHHHHHhhcCCCcccccCCCceeeeecCCCccccccCCCCCChhHHhhcC--CcceEeeeccccccHHHHHH
Q 002136 481 IVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFY--PTTMLETGHDILFFWVARMV 558 (961)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dvldtWf~S~l~~~~~~~~p~~~~~~~~~~~--P~d~~~~G~Dil~fw~~~~i 558 (961)
..-..+++ |.|++.+|+|++|+|....+
T Consensus 243 --------------------------------------------------sam~~~~lg~~~DIH~gG~DLifpHhenei 272 (501)
T 3sp1_A 243 --------------------------------------------------AAMNLEYFKDALDIHLGGVDHIGVHHINEI 272 (501)
T ss_dssp --------------------------------------------------HHHHHHHTTTCCCEEEEEGGGTTTHHHHHH
T ss_pred --------------------------------------------------HHHHHHHcCCCceEEeeccccccchHHHHH
Confidence 01112233 46999999999999999999
Q ss_pred HHHhHhcCCCCceEEEEe-ceEEcCCCccccccCCCccCchhhhhh-cChhHHHHHHHhCCCCCccccCHHHHHHHHHH-
Q 002136 559 MMGIEFTGSVPFSHVYLH-GLIRDSQGRKMSKTLGNVIDPIDTIKE-FGADALRFTISLGTAGQDLSLSIERLTANKAF- 635 (961)
Q Consensus 559 ~~~~~l~~~~Pfk~v~~h-g~v~d~~G~KMSKS~GNvI~p~dii~~-yGaDalR~~L~~~~~~~D~~f~~~~~~~~~~~- 635 (961)
+++.+++|+ ||.++++| |||. .+|+|||||+||+|+|.+++++ ||+|++||||++..+.+|++|+.+.+.+.++.
T Consensus 273 Aqs~a~~g~-~~~~~w~H~g~v~-~~G~KMSKSlGN~it~~dll~~gyg~d~lR~~lls~~yr~~l~fs~~~l~~a~~~~ 350 (501)
T 3sp1_A 273 AIAECFLNK-KWCDVFVHGEFLI-MDYNKMSKSRGNFITVKDLEDQNFSPLDFRYLCLTSHYRNQLKFSLDNLQASKIAR 350 (501)
T ss_dssp HHHHHHHTS-CCCSEEEEECCEE-CC----------CCCHHHHHHTTCCHHHHHHHHHTSCTTSCEECCHHHHHHHHHHH
T ss_pred HHHHHccCC-CCCeEEEEeeeEe-eCCeEccccCCCcCCHHHHHhcCCCHHHHHHHHHhccCCCCCccCHHHHHHHHHhh
Confidence 999999886 88999999 8987 7999999999999999999999 99999999999986699999999999998888
Q ss_pred ---HHHHHHHHHHHHhhCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhhh-cCChHHHHHHHH
Q 002136 636 ---TNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYD-KYFFGDVGRETY 711 (961)
Q Consensus 636 ---~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e-~~~f~~A~~~i~ 711 (961)
+++|||+++.+..... . ........ .+ ...+..+...+.++|+ .++...|+..|+
T Consensus 351 ~~ll~rl~~~~~~~~~~~~-----~------------~~~~~~~~-~~---~~~~~~~~~~f~~am~dDlnt~~al~~l~ 409 (501)
T 3sp1_A 351 ENLINKLSYFYESLDPVDL-----N------------TLNKDLKN-FG---FSVEKEYYDSFVEKISFDLNVAQGLALLW 409 (501)
T ss_dssp HHHHHHHHHHHHTCCHHHH-----H------------HHHSCTTS-CS---SHHHHHHHHHHHHHHHBTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhc-----c------------cccccccc-hh---hhhHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 9999998754321100 0 00000000 00 1234567778889996 899999999999
Q ss_pred HHH
Q 002136 712 DFF 714 (961)
Q Consensus 712 ~f~ 714 (961)
+++
T Consensus 410 ~~~ 412 (501)
T 3sp1_A 410 EII 412 (501)
T ss_dssp HHH
T ss_pred HHH
Confidence 987
No 18
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=100.00 E-value=3.7e-42 Score=395.19 Aligned_cols=348 Identities=19% Similarity=0.187 Sum_probs=230.1
Q ss_pred CCCCCCCCCCCCCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCC
Q 002136 78 QGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIK 157 (961)
Q Consensus 78 ~~~f~~~~~~~~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~ 157 (961)
...|.+ .++.+++++ .|+|+|.+||||++++++.|+++||+|++||+|.+++|+|+||.+|+.++ .+.|.+
T Consensus 31 ~~~f~p---~~~v~~y~~--gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A----~~~g~~ 101 (414)
T 3c8z_A 31 VRPVTP---GPTATMYVC--GITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERA----ERDGID 101 (414)
T ss_dssp EEECCC---CSEEEEEEC--CCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHH----HHHTCC
T ss_pred cccccC---CCCceEEeC--CCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHH----HHcCCC
Confidence 345665 222334443 58889999999999999999999999999999999999999999865544 445766
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-cCC-CCCccCCChhhHHHHHHHHHHHHhcCceEEcCeeeecCCCC
Q 002136 158 RVELSRDEFTKRVWEWKEKYGGTITSQIKRLGAS-CDW-TRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNL 235 (961)
Q Consensus 158 ~~~~~~~~f~~~~~~~~~~~~~~i~~~l~~lG~s-~Dw-~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~w~p~~ 235 (961)
+. ++++++.+.|+++|++||++ +|+ .+ |++ |...++++|.+|+++|+||+++++
T Consensus 102 ~~------------~~~~~~~~~~~~~~~~Lgi~~~d~~~r---~t~--~~~~~~~~~~~L~~kG~~Y~~~~~------- 157 (414)
T 3c8z_A 102 WR------------TLGDRETQLFREDMAALRVLPPHDYVA---ATD--AIAEVVEMVEKLLASGAAYIVEDA------- 157 (414)
T ss_dssp HH------------HHHHHHHHHHHHHHHHTTCCCCSEEEE---GGG--CHHHHHHHHHHHHHHTSEEECSCS-------
T ss_pred HH------------HHHHHHHHHHHHHHHHcCCCCCcceec---ccc--hHHHHHHHHHHHHHCCCEEeccCC-------
Confidence 53 45688999999999999999 883 33 433 889999999999999999998732
Q ss_pred CccccccccccccCCCeEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCchhhhhccCeeeccCCCCCeeeeeec
Q 002136 236 QTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISD 315 (961)
Q Consensus 236 ~t~lsd~Ev~~~e~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~ 315 (961)
.++ .+|| ++..
T Consensus 158 -------------~e~-~~~f--~~~~----------------------------------------------------- 168 (414)
T 3c8z_A 158 -------------EYP-DVYF--RADA----------------------------------------------------- 168 (414)
T ss_dssp -------------SCC-CEEE--CTTS-----------------------------------------------------
T ss_pred -------------cCC-CEEE--Echh-----------------------------------------------------
Confidence 001 1111 0000
Q ss_pred CccccCCCcceeEeCCCCChhHHHHHHHhCCCceeecCCCCcccccccccCCCchHHHHHHHHHHHHHcCCccccccccc
Q 002136 316 KYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTL 395 (961)
Q Consensus 316 ~~V~~~~GTG~v~~~Pah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~ 395 (961)
| ..+|...|.+. +.++..+.+++.-. ..+..
T Consensus 169 -~------------------------------------------~~~g~l~~~~~----~~~~~~~~~~~~~~--~~~~k 199 (414)
T 3c8z_A 169 -T------------------------------------------AQFGYESGYDR----DTMLTLFAERGGDP--DRPGK 199 (414)
T ss_dssp -S------------------------------------------TTTTTTTCCCH----HHHHHHHHHTTCCT--TCTTC
T ss_pred -h------------------------------------------hhhHhhcCCCH----HHHHHHHhhccccc--ccccc
Confidence 0 00011111111 11222222211000 00000
Q ss_pred cCCcccCCCCceeeeeccceeeeccHHHHHHHHHHHcCCceeechhHHHHHHHHHhcCCCceeeeccCCCcccceEEEcC
Q 002136 396 RVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVG 475 (961)
Q Consensus 396 ~~p~~~r~~~~v~~~~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~pIP~~~~~~ 475 (961)
.+..|+. -||++.| +
T Consensus 200 -------------------------------------------------------~~~~D~~-----lWk~~~p-----g 214 (414)
T 3c8z_A 200 -------------------------------------------------------SDQLDAL-----LWRAERP-----G 214 (414)
T ss_dssp -------------------------------------------------------SSTTCEE-----EEEECCT-----T
T ss_pred -------------------------------------------------------CCcchhh-----hcCCCCC-----C
Confidence 0223443 2666555 1
Q ss_pred CcccEEEecChHHHHHHHHhhcCCCcccccCCCceeeeecCCCccccccCCCCCChhHHhhcC--CcceEeeeccccccH
Q 002136 476 KEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFY--PTTMLETGHDILFFW 553 (961)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvldtWf~S~l~~~~~~~~p~~~~~~~~~~~--P~d~~~~G~Dil~fw 553 (961)
+ .+| +|. |....-||..+...-+.++| |.|++++|+|+++||
T Consensus 215 ------------------------------~----~~W-da~-~g~g~pgWhiec~a~~~~~~g~~~di~~~G~D~~~~H 258 (414)
T 3c8z_A 215 ------------------------------E----PSW-PSP-FGRGRPGWHVECSAIALTRIGTGLDIQGGGSDLIFPH 258 (414)
T ss_dssp ------------------------------S----CCB-CCT-TCSEEECHHHHHHHHHHHHTCSCEEEEEEEGGGTTTH
T ss_pred ------------------------------C----CCC-CCC-CCCCCCCccchhHHHHHHhcCCCceEEEeccccccHH
Confidence 0 024 332 21111222111111233444 899999999999999
Q ss_pred HHHHHHHHhHhcCCCCceEEEEe-ceEEcCCCccccccCCCccCchhhhhh-cChhHHHHHHHhCCCCCccccCHHHHHH
Q 002136 554 VARMVMMGIEFTGSVPFSHVYLH-GLIRDSQGRKMSKTLGNVIDPIDTIKE-FGADALRFTISLGTAGQDLSLSIERLTA 631 (961)
Q Consensus 554 ~~~~i~~~~~l~~~~Pfk~v~~h-g~v~d~~G~KMSKS~GNvI~p~dii~~-yGaDalR~~L~~~~~~~D~~f~~~~~~~ 631 (961)
....++++.++.|..||.++++| |+|. .+|+|||||+||+|+|.+++++ ||+|++||||++..+.+|++|+++.+.+
T Consensus 259 ~~~~~a~~~a~~g~~~~~~~~~h~g~v~-~~G~KMSKS~GN~v~~~~ll~~g~g~D~lR~~ll~~~~~~d~~fs~~~l~~ 337 (414)
T 3c8z_A 259 HEYSAAHAESVTGERRFARHYVHTGMIG-WDGHKMSKSRGNLVLVSQLRAQGVDPSAIRLGLFSGHYREDRFWSNEVLDE 337 (414)
T ss_dssp HHHHHHHHHHHHCCSCSEEEEEEECCBC--------------CBHHHHHHTTCCHHHHHHHHHTSCTTSCBCCCHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcCeEEEEcCEEe-cCCeEcccccCCcCCHHHHhhccCCcchheeEEEecCcCCCCCcCHHHHHH
Confidence 99999999888888899999999 7886 6999999999999999999999 9999999999995459999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhh-hcCChHHHHHHH
Q 002136 632 NKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASY-DKYFFGDVGRET 710 (961)
Q Consensus 632 ~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~-e~~~f~~A~~~i 710 (961)
..+++++|||+++++ . . + .++.+++++.++| ++|+|+.|+..|
T Consensus 338 ~~~~l~~l~n~~~~~----~---~---------------------~--------~~~~~~~~v~~a~~d~~~~~~Al~~i 381 (414)
T 3c8z_A 338 ANARLARWRSATALP----E---A---------------------P--------DATDVIARVRQYLADDLDTPKALAAL 381 (414)
T ss_dssp HHHHHHHHHHHHTSS----C---B---------------------S--------CCHHHHHHHHHHHHBTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc----c---c---------------------h--------hHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999986322 0 0 0 1256788899999 799999999999
Q ss_pred HHHH
Q 002136 711 YDFF 714 (961)
Q Consensus 711 ~~f~ 714 (961)
++|+
T Consensus 382 ~~~~ 385 (414)
T 3c8z_A 382 DGWC 385 (414)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9997
No 19
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=100.00 E-value=1.2e-40 Score=386.39 Aligned_cols=353 Identities=18% Similarity=0.205 Sum_probs=250.6
Q ss_pred CCCCCCCCCCCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCcc
Q 002136 80 YFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRV 159 (961)
Q Consensus 80 ~f~~~~~~~~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~ 159 (961)
.|.|.. +++.+++++. |+|+|.+||||++++++.|+++||+|+.||+|.++.|+|++|.+| .+.+++.|.++.
T Consensus 14 ~f~p~~-~~~v~~yv~g--Pt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki----~~~A~~~g~~~~ 86 (461)
T 1li5_A 14 EFKPIH-AGEVGMYVCG--ITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKI----IKRANENGESFV 86 (461)
T ss_dssp ECCCSS-TTEEEEEECC--CBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHH----HHHHHHTTCCHH
T ss_pred ccccCC-CCCeeEEEcC--CcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHH----HHHHHHcCCCHH
Confidence 355432 2233455554 666699999999999999999999999999999999999999775 444566787654
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc-CCCCCccCCChhhHHHHHHHHHHHHhcCceEEc-CeeeecCCCCCc
Q 002136 160 ELSRDEFTKRVWEWKEKYGGTITSQIKRLGASC-DWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG-SYMVNWSPNLQT 237 (961)
Q Consensus 160 ~~~~~~f~~~~~~~~~~~~~~i~~~l~~lG~s~-Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~-~~~v~w~p~~~t 237 (961)
++++++.+.+++++++||+++ |+.- . |+ +|...+++++.+|.++|++|.+ ...|+||+.+-
T Consensus 87 ------------~~~~~~~~~f~~~~~~LgI~~~d~~~-r-~t--~~~~~~~~~i~~L~~~G~aY~~~~g~v~f~~~~~- 149 (461)
T 1li5_A 87 ------------AMVDRMIAEMHKDFDALNILRPDMEP-R-AT--HHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTD- 149 (461)
T ss_dssp ------------HHHHHHHHHHHHHHHHTTCCCCSBCC-B-GG--GCHHHHHHHHHHHHHTTSEEECTTSCEEECGGGC-
T ss_pred ------------HHHHHHHHHHHHHHHHcCCCCCcccc-c-cc--chHHHHHHHHHHHHHCCCEEEecCCCEEEecccc-
Confidence 445788999999999999998 6421 1 33 3889999999999999999999 88888876531
Q ss_pred cccccccccccCCCeEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCchhhhhccCeeeccCCCCCeeeeeecCc
Q 002136 238 AVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKY 317 (961)
Q Consensus 238 ~lsd~Ev~~~e~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~ 317 (961)
-. |..+.| +.+
T Consensus 150 ------~~----------------------------------------------yg~lsg----------~~~------- 160 (461)
T 1li5_A 150 ------PT----------------------------------------------YGVLSR----------QDL------- 160 (461)
T ss_dssp ------TT----------------------------------------------TTTTTT----------C---------
T ss_pred ------cc----------------------------------------------cccccC----------CCH-------
Confidence 00 101111 100
Q ss_pred cccCCCcceeEeCCCCChhHHHHHHHhCCCceeecCCCCcccccccccCCCchHHHHHHHHHHHHHcCCccccccccccC
Q 002136 318 VDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRV 397 (961)
Q Consensus 318 V~~~~GTG~v~~~Pah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~ 397 (961)
.++..|+.+ ....
T Consensus 161 ~~l~~g~rv--------------------------------------------------------------~~~~----- 173 (461)
T 1li5_A 161 DQLQAGARV--------------------------------------------------------------DVVD----- 173 (461)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhhcCCcc--------------------------------------------------------------cchh-----
Confidence 000001000 0000
Q ss_pred CcccCCCCceeeeeccceeeeccHHHHHHHHHHHcCCceeechhHHHHHHHHHhcCCCceeeeccCCCcccceEEEcCCc
Q 002136 398 PRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKE 477 (961)
Q Consensus 398 p~~~r~~~~v~~~~~~qwF~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~pIP~~~~~~~~ 477 (961)
..+.|..+.+ | .+ .++-.+|+...||.+.|.|++++
T Consensus 174 ----~k~~p~Df~l---w----------------------k~-------------~~~g~~~w~s~WG~g~PgWhiec-- 209 (461)
T 1li5_A 174 ----DKRNPMDFVL---W----------------------KM-------------SKEGEPSWPSPWGAGRPGWHIEC-- 209 (461)
T ss_dssp -----CCSTTCEEE---E----------------------EE-------------CCTTSCCBCCTTCSEEECSSHHH--
T ss_pred ----cccCccceEE---E----------------------cc-------------CCCCCCcccCCCCCcCCCccchh--
Confidence 0000100000 1 00 00112244567999999776531
Q ss_pred ccEEEecChHHHHHHHHhhcCCCcccccCCCceeeeecCCCccccccCCCCCChhHHhhc--CCcceEeeeccccccHHH
Q 002136 478 EEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKF--YPTTMLETGHDILFFWVA 555 (961)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvldtWf~S~l~~~~~~~~p~~~~~~~~~~--~P~d~~~~G~Dil~fw~~ 555 (961)
. ++ ..++ .|.|++++|+||+|||..
T Consensus 210 s------------------------------am-----------------------~~~~lg~~~dih~gG~Dl~fpH~~ 236 (461)
T 1li5_A 210 S------------------------------AM-----------------------NCKQLGNHFDIHGGGSDLMFPHHE 236 (461)
T ss_dssp H------------------------------HH-----------------------HHHHHCSSEEEEECBGGGTTTHHH
T ss_pred H------------------------------HH-----------------------HHHHhCCCceEEeccCccCchHHH
Confidence 0 00 0111 267899999999999999
Q ss_pred HHHHHHhHhcCCCCceEEEEe-ceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHhCCCCCccccCHHHHHHHHH
Q 002136 556 RMVMMGIEFTGSVPFSHVYLH-GLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKA 634 (961)
Q Consensus 556 ~~i~~~~~l~~~~Pfk~v~~h-g~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~~~~~D~~f~~~~~~~~~~ 634 (961)
..++++.++.|. ||.++++| |||+ .+|+|||||+||+|+|.|++++||+|++||||++..+.+|++|+++.+.+..+
T Consensus 237 ~~~aq~~a~~g~-~~~~~~~h~g~v~-~~G~KMSKS~GN~v~~~dll~~~g~dalR~~ll~~~~~~~~~fs~~~l~~~~~ 314 (461)
T 1li5_A 237 NEIAQSTCAHDG-QYVNYWMHSGMVM-VDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARA 314 (461)
T ss_dssp HHHHHHHHHSSS-CCEEEECCBCCEE-ETTBCCCGGGTCCCBHHHHHTTSCHHHHHHHHHSSCTTSCEEECHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCcEEEEeeEEE-ECCeEccccCCCccChhHHhhhCCHHHHHHHHHcCCcCCCCCCCHHHHHHHHH
Confidence 999988888776 77788787 8998 68999999999999999999999999999999986559999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhh-hcCChHHHHHHHHHH
Q 002136 635 FTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASY-DKYFFGDVGRETYDF 713 (961)
Q Consensus 635 ~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~-e~~~f~~A~~~i~~f 713 (961)
.++++||+++++ .. . .+. | +++.+.+.+.++| ++|+++.|+..++++
T Consensus 315 ~l~rl~n~~~~~----~~--~--------------------~~~-d-----~l~~~~~~~~~am~dd~n~~~Al~~l~~l 362 (461)
T 1li5_A 315 ALERLYTALRGT----DK--T--------------------VAP-A-----GGEAFEARFIEAMDDDFNTPEAYSVLFDM 362 (461)
T ss_dssp HHHHHHHHHTTC----CT--T--------------------SCC-C-----SCHHHHHHHHHHHHBTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh----hc--C--------------------CCH-H-----HHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 999999987533 10 0 011 2 3667888999999 999999999999999
Q ss_pred HHHhhhHHHHHH
Q 002136 714 FWSDFADWYIEA 725 (961)
Q Consensus 714 ~~~~~~n~Yle~ 725 (961)
+ ..+|.|++.
T Consensus 363 ~--~~~N~~~~~ 372 (461)
T 1li5_A 363 A--REVNRLKAE 372 (461)
T ss_dssp H--HHHHHHHHH
T ss_pred H--HHHHHHHhc
Confidence 8 467999853
No 20
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus, translation, amino acid, structural genomics; 1.70A {Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A*
Probab=100.00 E-value=1.2e-37 Score=304.34 Aligned_cols=140 Identities=44% Similarity=0.780 Sum_probs=133.5
Q ss_pred CCeEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCchhhhhccCeeeccCCCCCeeeeeecCccccCCCcceeEe
Q 002136 250 PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKI 329 (961)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~v~~ 329 (961)
.|.++||+|++ +++.+++|||||||||+|++||||||+++||++|+|+++.||+ .++.+||+.++||++++|||+||+
T Consensus 3 ~~~~~~v~F~~-~~~~~l~i~TTrP~Tl~g~~aiav~P~~~~~~~l~g~~~~~P~-~~~~ipI~~~~~V~~~~GTG~V~~ 80 (147)
T 1wka_A 3 PGKLYTLRYEV-EGGGFIEIATVRPETVFADQAIAVHPEDERYRHLLGKRARIPL-TEVWIPILADPAVEKDFGTGALKV 80 (147)
T ss_dssp -CEEEEEEEEB-TTSCEEEEEESCGGGGGGCCEEEECTTCTTTGGGTTCEEECTT-SSCEEEEEECTTCCTTSTTSEEEE
T ss_pred cceEEEEEEEC-CCCcEEEEEECCceecccceEEEECCCCchHHHhcCCEEECCC-CCCeeEEEEeCccccCCCCCcEEE
Confidence 58899999999 6668999999999999999999999999999999999999999 489999999999999999999999
Q ss_pred CCCCChhHHHHHHHhCCCceeecCCCCcccccccc----cCCCchHHHHHHHHHHHHHcCCccccccc
Q 002136 330 SPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGL----FRGLDRFEARKKLWSDLEETGLAVKKEPH 393 (961)
Q Consensus 330 ~Pah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~----~~G~~~~~ar~~i~~~L~~~g~~~~~~~~ 393 (961)
|||||++||++|++||||+++++|++|+| ++|. |.||++++||++|++.|+++|++.+.+++
T Consensus 81 ~Pah~~~D~~~~~~~~L~~~~~id~~G~~--~~~~~~~~~~Gl~~~~A~~~Ii~~L~~~g~l~~~~~~ 146 (147)
T 1wka_A 81 TPAHDPLDYEIGERHGLKPVSVINLEGRM--EGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDY 146 (147)
T ss_dssp CTTTCHHHHHHHHHHTCCCCCSBCTTSBB--CSTTSCGGGTTSBHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred ccCCCHHHHHHHHHcCCCcceEECCCCEE--cCCCcccccCCcCHHHHHHHHHHHHHHCCCeeeeeEc
Confidence 99999999999999999999999999999 6777 99999999999999999999999987765
No 21
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A* 1wk8_A* 1udz_A 1ue0_A
Probab=100.00 E-value=1.1e-34 Score=295.67 Aligned_cols=145 Identities=31% Similarity=0.448 Sum_probs=131.8
Q ss_pred CCeEEEEEEEecCC------CeeEEEEecCCCccCCCcEEEECCC---------Cchh----------------------
Q 002136 250 PGTLYYIKYRVAGR------SDFLTIATTRPETLFGDVALAVNPQ---------DEHY---------------------- 292 (961)
Q Consensus 250 ~~~~~~~~~~~~~~------~~~l~v~TtrPeTl~g~~av~v~P~---------~~~y---------------------- 292 (961)
.++.+||+|++.+. +.+++|||||||||+|++||||||+ +++|
T Consensus 2 ~S~~i~V~F~~~~~~~~~~~~~~l~i~TTrP~Tl~g~~aiav~p~~~y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~ 81 (186)
T 1wny_A 2 QDPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGTPVLKTFP 81 (186)
T ss_dssp -CCEEEEEEEBSCGGGGTCSSEEEEEEESCGGGGGGCCEEEECTTSEEEEEEETTEEEEEEHHHHHHHHCTTSCEEEEEE
T ss_pred ccceEEEEEEeCCCccccCCCcEEEEEECCcchhhcceEEEECCCCcEEEEEeCCcchHHHHHHHHHHhhcCcEEEEEEE
Confidence 35789999999875 5799999999999999999999999 6666
Q ss_pred -hhhccCeeeccCCC--CCeeeeeecCccccCCCcceeEeCCCCChhHHHHHHHhCCCceeecCCCCcccccccccCCCc
Q 002136 293 -SQFIGMMAIVPMTY--GRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLD 369 (961)
Q Consensus 293 -~~l~g~~~~~P~~~--~~~ipii~~~~V~~~~GTG~v~~~Pah~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~ 369 (961)
.+|+|.++.||+.. ++.+||+.++||++++|||+||+|||||++||++|++||||+++++|++|.|++. | |.||.
T Consensus 82 G~~l~g~~~~~P~~~~~~~~ipi~~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~L~i~~~id~~G~~~~~-~-~~Gl~ 159 (186)
T 1wny_A 82 GKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVE-P-FKGLY 159 (186)
T ss_dssp HHHHTTCBBCCSSCCCCSSCCBEEECTTCCSSSSCSCEEECGGGCHHHHHHHHHHTCCCCCCBCTTSBBCST-T-CTTCB
T ss_pred cccccCcEEECCccccCCCEEEEEEeCcCcCCCCcccEEEcCCCCHHHHHHHHHcCCceEeeeCCCccCccC-C-CCCcC
Confidence 46999999999953 7899999999999999999999999999999999999999999999999999987 7 99999
Q ss_pred hHHHHHHHHHHHHHcCCcccccccccc
Q 002136 370 RFEARKKLWSDLEETGLAVKKEPHTLR 396 (961)
Q Consensus 370 ~~~ar~~i~~~L~~~g~~~~~~~~~~~ 396 (961)
++||+++|++.|+++|++.+.+++.|+
T Consensus 160 v~~A~~~Ii~~L~~~g~l~~~~~~~Hs 186 (186)
T 1wny_A 160 FREANRAILRDLRGRGLLFKEESYLHS 186 (186)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEC----
T ss_pred HHHHHHHHHHHHHHCCCeecceeEEcC
Confidence 999999999999999999999998874
No 22
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia coli} PDB: 2ajh_A 2aji_A
Probab=99.97 E-value=1.9e-31 Score=273.91 Aligned_cols=139 Identities=33% Similarity=0.511 Sum_probs=124.0
Q ss_pred CCeEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCch-------------hh--------------------hhc
Q 002136 250 PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEH-------------YS--------------------QFI 296 (961)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~~-------------y~--------------------~l~ 296 (961)
.|+.++|+|++.+.+.+|+|||||||||+|++||||||++++ |. .|.
T Consensus 9 ~~~g~~v~F~~~~~~~~l~i~TTrP~TL~g~~avav~P~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~l~ 88 (196)
T 2ajg_A 9 MGEGVEITFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPELAAFIDECRNTKVAEAEMATMEKKGVDT 88 (196)
T ss_dssp --CEEEEEEEBTTCSSEEEEEESCGGGGGGCCEEEECTTSHHHHHHHTTCHHHHHHHHHHHHCCCCGGGGGGSCCCEEEE
T ss_pred cCceEEEEEEeCCCCcEEEEEECChhhhcCccEEEECCCCcEEEEEcCCHHHHHHHHHHhhcccccceEEEeeeeCCEEc
Confidence 377899999998877899999999999999999999999862 21 167
Q ss_pred cCeeeccCCCCCeeeeeecCccccCCCcceeEeCCCCChhHHHHHHHhCCCceeecC---------CCCccccc-----c
Q 002136 297 GMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMN---------KDGTLNEV-----A 362 (961)
Q Consensus 297 g~~~~~P~~~~~~ipii~~~~V~~~~GTG~v~~~Pah~~~D~~~~~~~~l~~~~~~~---------~~G~~~~~-----~ 362 (961)
|.+|.||| .++.+||+.++||++++|||+||+|||||++||++|++||||++++++ ++|.++++ +
T Consensus 89 G~~~~~P~-~~~~ipV~~ad~V~~~~GTG~V~~aPah~~~D~~~~~k~~L~i~~vI~~~~g~~~d~~~g~y~~~g~~~ns 167 (196)
T 2ajg_A 89 GFKAVHPL-TGEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNS 167 (196)
T ss_dssp EEEEECTT-TCCEEEEEEETTCCSSSSCSEEEECTTTCHHHHHHHHHHTCCCCCCBCCTTSSCCCCSSSCCCSCCCBCSS
T ss_pred CCEEECCC-CCCeeEEEEeCCCccCCCCceEEECCCCCHHHHHHHHHcCCCceeEEeCCcCcccccccccccCCceEecC
Confidence 99999999 489999999999999999999999999999999999999999999996 46666654 4
Q ss_pred cccCCCchHHHHHHHHHHHHHcCCccc
Q 002136 363 GLFRGLDRFEARKKLWSDLEETGLAVK 389 (961)
Q Consensus 363 g~~~G~~~~~ar~~i~~~L~~~g~~~~ 389 (961)
|.|.||+++||+++|++.|+++|++.+
T Consensus 168 ~~~~Gl~v~eA~~~Ii~~L~~~g~~~~ 194 (196)
T 2ajg_A 168 GEFNGLDHEAAFNAIADKLTAMGVGER 194 (196)
T ss_dssp GGGTTCCHHHHHHHHHHHHHHTTSEEE
T ss_pred cccCCeEHHHHHHHHHHHHHHCCCcee
Confidence 789999999999999999999998765
No 23
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=99.97 E-value=6.9e-30 Score=294.28 Aligned_cols=198 Identities=17% Similarity=0.192 Sum_probs=136.2
Q ss_pred eEeeeccccccHHHHHHHHHhHhcCCCCce-EEEEeceE-EcCCCc--cccccCCCccCchhhhhhcChhHHHHHHHhCC
Q 002136 542 MLETGHDILFFWVARMVMMGIEFTGSVPFS-HVYLHGLI-RDSQGR--KMSKTLGNVIDPIDTIKEFGADALRFTISLGT 617 (961)
Q Consensus 542 ~~~~G~Dil~fw~~~~i~~~~~l~~~~Pfk-~v~~hg~v-~d~~G~--KMSKS~GNvI~p~dii~~yGaDalR~~L~~~~ 617 (961)
+++.|.|+. .|+.++. ..+...|..|.+ .++.|||| ++.+|+ |||||+||+|+|.|+++++|+|++|||+++..
T Consensus 239 Iyv~G~dq~-~~f~~l~-~~l~~lG~~~~~~~h~~~g~V~l~~dG~~~KMSKr~Gn~v~l~dll~~~g~dalRy~~l~~~ 316 (464)
T 3fnr_A 239 INIWGADHH-GYIPRMK-AAMEFLGFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVDEIGSDALRYIFLSKK 316 (464)
T ss_dssp EEEEEGGGG-GGHHHHH-HHHHTTTCCGGGEEEEEECCEEEEETTEECCC---CCSSCBHHHHHHHHCHHHHHHHTTSSC
T ss_pred EEEecCcHH-HHHHHHH-HHHHHcCCCccceEEEEeeeEEecCCCcccCCcCcCCCCCCHHHHHhhccHHHHHHHHHhcC
Confidence 678899977 5777654 444455665545 67889999 556775 99999999999999999999999999999987
Q ss_pred CCCccccCHHHHHHHHH---------HHHHHHHHHHHHHhhCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHH
Q 002136 618 AGQDLSLSIERLTANKA---------FTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLH 688 (961)
Q Consensus 618 ~~~D~~f~~~~~~~~~~---------~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~ 688 (961)
+.+|++||++.+.+..+ ...++.++++... ..+... ...+...+...|++++.++.
T Consensus 317 ~~~d~~Fd~~~~~~~~n~npv~YlqYa~aRi~silrk~~--~~~~~~-------------~~~~~~~L~~~e~~Ll~~L~ 381 (464)
T 3fnr_A 317 CDTHLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAG--KKIDDV-------------MKADLQSLNQDGVNLLFEAL 381 (464)
T ss_dssp TTSCEEEEGGGGGCCSTTSHHHHHHHHHHHHHHHHHHTT--CCTTTS-------------TTCCCTTCCHHHHHHHHHHH
T ss_pred CCCCCccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh--ccCCCc-------------cccChhhCChHHHHHHHHHH
Confidence 89999999998865211 1334555444321 111110 00012234555999999999
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhhHHHHHHhhhhhccCCChH--HHHHHHHHHHHHHHHHHHHhCCCch
Q 002136 689 MLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDS--DAIIAQAVLLYIFENILKLLHPFMP 762 (961)
Q Consensus 689 ~~~~~v~~a~e~~~f~~A~~~i~~f~~~~~~n~Yle~~K~~l~~~~~~~--~~~~~~~~l~~vl~~~l~LL~Pf~P 762 (961)
.+.+.+.+++++|+++.+++.++++. ..++++|-+ .++...+++. .|....... +|...+.||.-=.|
T Consensus 382 ~~~~~v~~a~~~~ep~~i~~yL~~La-~~~n~fY~~---~~vl~~~~~~~~aRL~L~~a~--vL~~gL~lLGi~ap 451 (464)
T 3fnr_A 382 NLKAVLNDAFEARALQKIPDYLKNLA-ANFHKFYNE---NKVVGSANENDLLKLFSLVAL--SIKTAFSLMGIEAK 451 (464)
T ss_dssp THHHHHHHHHHHTCTTHHHHHHHHHH-HHHHHHHHH---CCCTTSTTHHHHHHHHHHHHH--HHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHh---CcCCCCCHHHHHHHHHHHHHH--HHHHHHHhcCCCch
Confidence 99999999999999999999999998 577777743 2333332211 222222222 78888888876555
No 24
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- protein biosynthesis; 1.77A {Aquifex aeolicus} PDB: 3pz0_A 3pz5_A
Probab=99.97 E-value=1.4e-30 Score=270.53 Aligned_cols=129 Identities=33% Similarity=0.573 Sum_probs=112.6
Q ss_pred eeEEEEecCCCccCCCcEEEECCCCchhh----------------------------------------hhccCeeeccC
Q 002136 265 DFLTIATTRPETLFGDVALAVNPQDEHYS----------------------------------------QFIGMMAIVPM 304 (961)
Q Consensus 265 ~~l~v~TtrPeTl~g~~av~v~P~~~~y~----------------------------------------~l~g~~~~~P~ 304 (961)
.+++|||||||||+|+++|||||++++.. .|.|.+|.|||
T Consensus 38 ~~l~vwTTtPwTL~gn~~iav~pe~~yv~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~G~l~G~~~~~Pl 117 (219)
T 3o0a_A 38 IYIDVFTTRPDTVFGATFVVLAPEHPLVPVLACIGERLGNACYSDVENFVEKMKKMSTRERTMEEDKEGVFLGVYATNPA 117 (219)
T ss_dssp EEEEEEESCGGGGGGCCEEEECTTCTHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCCHHHHHSCSSCCEEEEEEEEECTT
T ss_pred CEEEEEECCcchhhcccEEEECCCCcEEEEEecCCccccchhHHHHHHHHHHHHhhccccceeEEEeeeEEcCCEEECCC
Confidence 68999999999999999999999986310 14588999999
Q ss_pred CCCCeeeeeecCccccCCCcceeEeCCCCChhHHHHHHHhCCCceeecCC-------CCcccc-----cccccCCCchHH
Q 002136 305 TYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNK-------DGTLNE-----VAGLFRGLDRFE 372 (961)
Q Consensus 305 ~~~~~ipii~~~~V~~~~GTG~v~~~Pah~~~D~~~~~~~~l~~~~~~~~-------~G~~~~-----~~g~~~G~~~~~ 372 (961)
.++.+||+.++||++++|||+||+|||||++||++|++||||+++++++ +|.+++ +++.|.||++++
T Consensus 118 -~~~~iPI~~adyV~~~~GTGaV~~aPaHd~~D~~~~~k~~Lpi~~vi~~~~~~~~~~g~ft~~g~~~~~~~~~Gl~~~e 196 (219)
T 3o0a_A 118 -NGEKIPVWSANYVLYEYGTGAIMCVPAHDQRDWEFAKKYDLPIKVVVKPEGAWDFEKGAYEGKGTLVNSDGFDGLDSET 196 (219)
T ss_dssp -TCCEEEEEEETTSCTTSTTSEEEECTTTCHHHHHHHHHHTCCCCCCEECSSCCCTTTCCCCSCCEECSCGGGTTCBHHH
T ss_pred -CCCeeeEEEecccccCCCCCeEEECCCCCHHHHHHHHHcCCCceeeeCCccccccccccccccceEecCCCCCCCCHHH
Confidence 5899999999999999999999999999999999999999999999986 344443 468999999999
Q ss_pred HHHHHHHHHHHcCCcccccccc
Q 002136 373 ARKKLWSDLEETGLAVKKEPHT 394 (961)
Q Consensus 373 ar~~i~~~L~~~g~~~~~~~~~ 394 (961)
||++|++.|+++|++.+..+|.
T Consensus 197 A~~~Ii~~L~~~g~l~~~~~yr 218 (219)
T 3o0a_A 197 AKRKITEWLQDRGLGEKKVSYR 218 (219)
T ss_dssp HHHHHHHHHHHTTSEEEC----
T ss_pred HHHHHHHHHHHCCCeeeeeeec
Confidence 9999999999999999877653
No 25
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain, hydrolysis of MIS-charged trnas, benzoxaborole, anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB: 2wfe_A*
Probab=99.95 E-value=8.8e-29 Score=264.19 Aligned_cols=135 Identities=25% Similarity=0.401 Sum_probs=115.2
Q ss_pred CeeEEEEecCCCccCCCcEEEECCCCc----------------h------------------------hhhhccCeeecc
Q 002136 264 SDFLTIATTRPETLFGDVALAVNPQDE----------------H------------------------YSQFIGMMAIVP 303 (961)
Q Consensus 264 ~~~l~v~TtrPeTl~g~~av~v~P~~~----------------~------------------------y~~l~g~~~~~P 303 (961)
+.+|+|||||||||+|++||||||+.+ + +.+|+|.+|+||
T Consensus 32 ~~~l~v~TTrP~TL~g~talav~Pe~~yv~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~L~G~~~~~P 111 (261)
T 2wfg_A 32 KVYLVAATLRPETMYGQTCCFVSPKIDYGVFDAGNGDYFITTERAFKNMSFQNLTPKRGYYKPLFTINGKTLIGSRIDAP 111 (261)
T ss_dssp EEEEEEEESCGGGGGGCCEEEECTTCEEEEEECSTTEEEEECHHHHHHHTTTTCSSSTTCCCCSEEEEHHHHTTCEEECT
T ss_pred CCEEEEEECCchHHhhhheEEECCCCceEEEEecCceEEEhHHHHHHHHHHHhhhhcccccEEEEEEecccccCCEEECC
Confidence 468999999999999999999999932 2 235899999999
Q ss_pred CCCCCeeeeeecCccccCCCcceeEeCCCCChhHHHHHHH-------hC-------CCceeecCC--CCcccc-------
Q 002136 304 MTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARK-------LG-------LPILNVMNK--DGTLNE------- 360 (961)
Q Consensus 304 ~~~~~~ipii~~~~V~~~~GTG~v~~~Pah~~~D~~~~~~-------~~-------l~~~~~~~~--~G~~~~------- 360 (961)
++.++.+||++++||++++|||+||+|||||++||++|++ || ||++++++. +|.+++
T Consensus 112 l~~~~~ipV~~adyV~~~~GTG~V~~vPaHd~~Dy~~~~kl~~~~~~ygi~~~~~~L~i~~vId~~~~g~~~~~~~~~~~ 191 (261)
T 2wfg_A 112 YAVNKNLRVLPMETVLATKGTGVVTCVPSDSPDDFVTTRDLANKPEYYGIEKDWVQTDIVPIVHTEKYGDKCAEFLVNDL 191 (261)
T ss_dssp TCSSCSEEEEECTTCCTTSTTSCEEECTTTCHHHHHHHHHHHHSTTTTTCCGGGCCCCCCCCEEBTTTBTCHHHHHHHHT
T ss_pred CCCCceeEEEeeccccCCCCCCeeEEcCCCCHHHHHHHHHhhcchhhcCCccccccCCceeEEcCcccCccchhhhhccc
Confidence 9646789999999999999999999999999999999999 99 899999987 454321
Q ss_pred ----------------------------cccccCCCchHHHHHHHHHHHHHcCCccccccccccCC
Q 002136 361 ----------------------------VAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVP 398 (961)
Q Consensus 361 ----------------------------~~g~~~G~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p 398 (961)
.+|.|.||++++||+.|+++|+++|++.+..++.|+--
T Consensus 192 ~i~s~~d~~~l~~a~~~~y~~G~~~g~~~~g~f~Gl~v~eA~~~Ii~~L~~~G~~~~~~~~~h~~~ 257 (261)
T 2wfg_A 192 KIQSPKDSVQLANAKELAYKEGFYNGTMLIGKYKGDKVEDAKPKVKQDLIDEGLAFVYNEPELEHH 257 (261)
T ss_dssp TCCSTTCHHHHHHHHHHHHHHHHHHCEECSSTTTTSBHHHHHHHHHHHHHHTTSEEEECC------
T ss_pred cccccchhhhhhhhhhhhhhcccccceEeccccCCeEHHHHHHHHHHHHHHCCCeeeeeeeeeccc
Confidence 16889999999999999999999999999988887643
No 26
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=99.95 E-value=1.6e-26 Score=277.00 Aligned_cols=177 Identities=14% Similarity=0.069 Sum_probs=122.1
Q ss_pred EEEEeceEEcCCCccccccCC--CccCchhhhhh---------------------------cChhHHHHHHHhCCCCCcc
Q 002136 572 HVYLHGLIRDSQGRKMSKTLG--NVIDPIDTIKE---------------------------FGADALRFTISLGTAGQDL 622 (961)
Q Consensus 572 ~v~~hg~v~d~~G~KMSKS~G--NvI~p~dii~~---------------------------yGaDalR~~L~~~~~~~D~ 622 (961)
.++.||||. .+|.|||||+| |+|++.|++++ +|.||+||++++..+.+|+
T Consensus 411 ~h~~~g~V~-~~~~KMSkr~G~~n~v~l~dLl~e~~~~a~~~~~~~~~~~~~~~~~~~a~~vg~~AvRy~~L~~~~~~~~ 489 (629)
T 2zue_A 411 YHLAYEHVE-RPEGKFSGRKGTWVGFTVDEVIQEAVKRARELIEEKNPALSDEEKAEVAEKVGIGAIRYNLIKYSPDKKI 489 (629)
T ss_dssp EEEEECCEE-BTTBCCCTTTTTTTTCBHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHSSCTTSCE
T ss_pred EEEEeeeEE-cCCCcccCCCCCCCeeeHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHhcChhHhhHHHHhcCCCCCC
Confidence 578899998 78999999999 99999999999 9999999999998889999
Q ss_pred ccCHHHHHHH--------HHHHHHHHHHHHHHHhhCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHH
Q 002136 623 SLSIERLTAN--------KAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTV 694 (961)
Q Consensus 623 ~f~~~~~~~~--------~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v 694 (961)
+||++.+.+. .....++.+.++-.... +... + ...+. ...+.......++.++..+..+.+.+
T Consensus 490 ~Fd~d~~~~~~~~t~~ylqYa~aRi~Silrka~~~--~~~~-~-~~~~~-----~~~~~~l~~~~e~~L~~~l~~fp~~v 560 (629)
T 2zue_A 490 IFRWEDVLNFEGESAPYIQYAHARCSSILRKAEEE--GIKV-D-PETLF-----KNADFTKLSERERELVIMLSKFPRIV 560 (629)
T ss_dssp ECCHHHHSCCSSSSHHHHHHHHHHHHHHHHHHHHT--TCCC-C-HHHHH-----HHCCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred eecHHHHHHHhcCchHHHHHHHHHHHHHHHhhhcc--cccc-c-ccccc-----ccccccCCCHHHHHHHHHHHHHHHHH
Confidence 9999998741 11223333333322111 1000 0 00000 00011112456778999999999999
Q ss_pred HHhhhcCChHHHHHHHHHHHHHhhhHHHHHHhhhhhccCCCh--HHHHHHHHHHHHHHHHHHHHhCCCch
Q 002136 695 TASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYD--SDAIIAQAVLLYIFENILKLLHPFMP 762 (961)
Q Consensus 695 ~~a~e~~~f~~A~~~i~~f~~~~~~n~Yle~~K~~l~~~~~~--~~~~~~~~~l~~vl~~~l~LL~Pf~P 762 (961)
.+++++++++.++..++++. ..|..+| +. .++...++. ..|.........+|...+.||.-=.|
T Consensus 561 ~~a~~~~~p~~l~~yl~~La-~~fn~fy-~~--~~vl~~~~~~~~~RL~L~~a~~~vL~~gL~lLGI~ap 626 (629)
T 2zue_A 561 EQAGKDVKPHLIAWFANELA-SLFNKFY-MD--HPVLKAEEGVREARLLLVMAVEQVLKNALYLMGIEAP 626 (629)
T ss_dssp HHHHHTTCTHHHHHHHHHHH-HHHHHHH-HH--CCSTTSCTTHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHH-HHHHHHH-Hh--ccccCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 99999999999999999997 5666666 32 344443222 24455556777888888888864444
No 27
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=99.95 E-value=9.9e-27 Score=278.26 Aligned_cols=176 Identities=14% Similarity=0.075 Sum_probs=118.8
Q ss_pred EEEEeceEEcCCCccccccCCCccCchhhhhh-------------------------cChhHHHHHHHhCCCCCccccCH
Q 002136 572 HVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE-------------------------FGADALRFTISLGTAGQDLSLSI 626 (961)
Q Consensus 572 ~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~-------------------------yGaDalR~~L~~~~~~~D~~f~~ 626 (961)
.++.||||+ .+|+|||||+||+|+|.|++++ +|+|++|||+++..+.+|++||+
T Consensus 381 ~H~~~g~v~-~~g~KMSKr~Gn~v~l~dll~~~~~~~~~~~~~~~~~~~~~e~~a~~vg~~aiRyf~L~~~~~~~~~Fd~ 459 (592)
T 1iq0_A 381 HHLAYETVL-LEGRQMSGRKGLAVSVDEVLEEATRRARAIVEEKNPDHPDKEEAARMVALGAIRFSMVKTEPKKQIDFRY 459 (592)
T ss_dssp EEEEECCEE-ETTBCSCC----CCBHHHHHHHHHHHHHHHHHHHCTTCSCHHHHHHHHHHHHHHHHHHHSCTTSCEEECH
T ss_pred EEEEeeEEE-cCCCcccCCCCCccCHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhhcHHHHHHHHHhcCCCCCCeecH
Confidence 567899998 7999999999999999999999 99999999999988899999999
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHhhCCCCCchhhHHHHHhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHhhhcCChHH
Q 002136 627 ERLTANKA-FTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGD 705 (961)
Q Consensus 627 ~~~~~~~~-~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~ 705 (961)
+.+....+ ....+-++..++.+.+..... .+. . ........+..++..+..+.+.+.+++++++++.
T Consensus 460 d~~~~~~~~~~~ylqya~aR~~sil~k~~~---------~~~--~-~~~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~ 527 (592)
T 1iq0_A 460 QEALSFEGDTGPYVQYAHARAHSILRKAGE---------WGA--P-DLSQATPYERALALDLLDFEEAVLEAAEERTPHV 527 (592)
T ss_dssp HHHHCSSSSSHHHHHHHHHHHHHHHHHHCC---------CCC--C-CGGGCCHHHHHHHHHHTTHHHHHHHHHHHTCHHH
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHhhcc---------cCC--C-ccCCCCHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 99986221 223333333222211100000 000 0 0011134577788899999999999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHhhh-----hhccCCCh--HHHHHHHHHHHHHHHHHHHHhCCCch
Q 002136 706 VGRETYDFFWSDFADWYIEASKA-----RLYRSEYD--SDAIIAQAVLLYIFENILKLLHPFMP 762 (961)
Q Consensus 706 A~~~i~~f~~~~~~n~Yle~~K~-----~l~~~~~~--~~~~~~~~~l~~vl~~~l~LL~Pf~P 762 (961)
+++.++++. ...|.|++..+| ++...+++ ..|......+..+|...+.||.-=.|
T Consensus 528 ~~~yl~~La--~~fn~fy~~~~~~~~~~~vl~~~~~~~~~RL~L~~a~~~vl~~~l~lLGi~~~ 589 (592)
T 1iq0_A 528 LAQYLLDLA--ASWNAYYNARENGQPATPVLTAPEGLRELRLSLVQSLQRTLATGLDLLGIPAP 589 (592)
T ss_dssp HHHHHHHHH--HHHHHHHHCEETTEESSCSTTSCTTHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHH--HHHHHHHHhccccccCCceeCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 999999997 445666676654 55544222 13444556677788888888874443
No 28
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, phosphoprotein, editing domain, nucleotide-binding, hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens}
Probab=99.94 E-value=3.4e-27 Score=251.14 Aligned_cols=136 Identities=25% Similarity=0.428 Sum_probs=114.4
Q ss_pred eEEEEEEEec-----------CCCeeEEEEecCCCccCCCcEEEECCCCc----------------h------hhh----
Q 002136 252 TLYYIKYRVA-----------GRSDFLTIATTRPETLFGDVALAVNPQDE----------------H------YSQ---- 294 (961)
Q Consensus 252 ~~~~~~~~~~-----------~~~~~l~v~TtrPeTl~g~~av~v~P~~~----------------~------y~~---- 294 (961)
.+.-|||++. +.+.+|+|||||||||+|++||||||+++ + |++
T Consensus 6 e~~~ikf~v~~~~~~~~~~~~~~~~~l~v~TTrP~TL~g~talav~Pe~~yv~~~~~~~~~~i~a~~~~~~~~~~~~~~~ 85 (252)
T 2wfd_A 6 EYTLLKLKVLEPYPSKLSGLKGKNIFLVAATLRPETMFGQTNCWVRPDMKYIGFETVNGDIFICTQKAARNMSYQGFTKD 85 (252)
T ss_dssp EEEEEEEEEESSCCGGGGGGTTSCEEEEEEESCGGGGGGCCEEEECSSSCCEEEECTTSCEEEECHHHHHHHHTTTSSSS
T ss_pred EEEEEEEEccCcchhhhhhccCCCCEEEEEECChHHHhhhheEEECCCCcEEEEEecCCcEEEEhhhhHHHHHHHHhhcc
Confidence 3556777753 33579999999999999999999999962 1 222
Q ss_pred --------------hccCeeeccCCCC-CeeeeeecCccccCCCcceeEeCCCCChhHHHH----------HHHhCCC--
Q 002136 295 --------------FIGMMAIVPMTYG-RHVPIISDKYVDKEFGTGVLKISPGHDHNDYLL----------ARKLGLP-- 347 (961)
Q Consensus 295 --------------l~g~~~~~P~~~~-~~ipii~~~~V~~~~GTG~v~~~Pah~~~D~~~----------~~~~~l~-- 347 (961)
|+|.+++||++ + +.+||+.++||++++|||+||+|||||++||++ +++||||
T Consensus 86 ~~~~~~~~~~~G~~l~G~~~~~Pl~-~~~~ipV~~adyV~~~~GTG~V~~vPaHd~~D~~~~~~l~~~~~fa~kygL~~~ 164 (252)
T 2wfd_A 86 NGVVPVVKELMGEEILGASLSAPLT-SYKVIYVLPMLTIKEDKGTGVVTSVPSDSPDDIAALRDLKKKQALRAKYGIRDD 164 (252)
T ss_dssp TTCCCEEEECCHHHHTTCEEECSSC-SSSCEEEEECSCCCSSSSCSSEEECTTTCHHHHHHHHHHHHCSHHHHTTTCCGG
T ss_pred CcccEEEEEEEcccccCCEEEcCCC-CCceeEEEEeCcccCCCCCCeEEEcCCCCHHHHHHHhhhccchhHHHHcCCCch
Confidence 89999999995 6 589999999999999999999999999999994 7889988
Q ss_pred ------ceeecCC---------------------------------------CCcccccccccCCCchHHHHHHHHHHHH
Q 002136 348 ------ILNVMNK---------------------------------------DGTLNEVAGLFRGLDRFEARKKLWSDLE 382 (961)
Q Consensus 348 ------~~~~~~~---------------------------------------~G~~~~~~g~~~G~~~~~ar~~i~~~L~ 382 (961)
++.+++. +|.|+ +|.|.||++++||++|+++|+
T Consensus 165 ~~~~~~~~~vI~~~~~g~~~~~~~~~~~~i~~~~d~~~l~~~~~~~y~~~~~~G~~~--~~~~~Gl~v~eA~~~Ii~~L~ 242 (252)
T 2wfd_A 165 MVLPFEPVPVIEIPGFGNLSAVTICDELKIQSQNDREKLAEAKEKIYLKGFYEGIML--VDGFKGQKVQDVKKTIQKKMI 242 (252)
T ss_dssp GTTTCCCCCCEEBTTTBSSHHHHHHHHTTCCSTTCHHHHHHHHHHHHHHHHHHCEEC--STTSTTCBHHHHHHHHHHHHH
T ss_pred hccccCceeEEecCcccccchhhhhhhccccCcchhhhhhhhhhhhccccccCceEe--eeccCCeEHHHHHHHHHHHHH
Confidence 4555532 36665 788999999999999999999
Q ss_pred HcCCcccc
Q 002136 383 ETGLAVKK 390 (961)
Q Consensus 383 ~~g~~~~~ 390 (961)
++|++...
T Consensus 243 ~~g~~~~~ 250 (252)
T 2wfd_A 243 DAGDALIY 250 (252)
T ss_dssp HTTSEEEE
T ss_pred HCCCCccc
Confidence 99988654
No 29
>3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase; 2.60A {Giardia intestinalis}
Probab=99.93 E-value=4.9e-27 Score=248.53 Aligned_cols=156 Identities=18% Similarity=0.287 Sum_probs=128.8
Q ss_pred CCCCCcccccccc--ccccCCCeEEEEEEEecCCCeeEEEEecCCCccCCCcEEEECCCCc----------h--------
Q 002136 232 SPNLQTAVSDLEV--EYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDE----------H-------- 291 (961)
Q Consensus 232 ~p~~~t~lsd~Ev--~~~e~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~av~v~P~~~----------~-------- 291 (961)
..+++|+||+-|- .|+++.+.++ .+.+.+.+.+++||||||||||||+||||||+.+ +
T Consensus 47 ~~~~~~~l~~f~~~~~~k~~~~~~~--~~~l~g~~v~lvIWTTTPWTLPgNtAiaVnPd~~Yv~v~~~~ge~~IvAe~l~ 124 (311)
T 3pz6_A 47 AEKLNIKLPRFYSNPKNKAIFDQLW--ENQVDNAKVYLLAATLRPETMVGQTNCWVLPTGRYGAYYINKDEVIIVSEHAA 124 (311)
T ss_dssp CCTTSCCCCCCCCCHHHHHHHHHHH--TTTCCSCEEEEEEEESCGGGGGGCCEEEECTTCEEEEEEEETTEEEEEEHHHH
T ss_pred HHHhCCCccccccCCCcccccchhe--eeecCCCCEEEEEEECCchhhhhheEEEECCCCcEEEEEECCCCEEEEeHHHH
Confidence 4577899999886 5777777776 5667777789999999999999999999999942 1
Q ss_pred ----h--------------------hhhccCeeeccCCCCC-eeeeeecCccccCCCcceeEeCCCCChhHHHHHHH---
Q 002136 292 ----Y--------------------SQFIGMMAIVPMTYGR-HVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARK--- 343 (961)
Q Consensus 292 ----y--------------------~~l~g~~~~~P~~~~~-~ipii~~~~V~~~~GTG~v~~~Pah~~~D~~~~~~--- 343 (961)
| ++|+|.++.|||. ++ .+||++++||++++|||+||+|||||++||+++++
T Consensus 125 e~l~~q~~~~~~~~~~~~vl~~~kG~eL~G~~~~hPl~-~~~~ipIl~ad~Vt~d~GTGiVh~aPaHg~dDy~~~~d~Lk 203 (311)
T 3pz6_A 125 VNMAHQGLNNNKPFGELDFISEISGSDLLLATVRAPLS-PYEQIFVLPLETIKMDKGTGIVTSVPSDAPDDYACYKDILE 203 (311)
T ss_dssp HHHHTTTCSSSCCTTCCCEEEEEEHHHHTTCEEECTTC-SSSCEEEEECTTCCTTSTTSEEEECTTTCHHHHHHHHHHHT
T ss_pred HHHHHhcccccccCCCcEEEEEEEhHHhcCCEEECCCC-CCCeeEEEecCcCccCCCcceEEeCCCCCHHHHHHHHHHhh
Confidence 1 1378999999995 54 89999999999999999999999999999997766
Q ss_pred --------hCC---------CceeecCC---------------------------------------CCcccccccccCC
Q 002136 344 --------LGL---------PILNVMNK---------------------------------------DGTLNEVAGLFRG 367 (961)
Q Consensus 344 --------~~l---------~~~~~~~~---------------------------------------~G~~~~~~g~~~G 367 (961)
+|| +++.+|+- +|.|. +|.|+|
T Consensus 204 ~k~~~~~Kygi~~e~v~~~~e~ipvI~~~g~G~~~A~~~ve~~~I~sq~D~~kLeeA~~~~Y~~ef~~Gvm~--~g~~~G 281 (311)
T 3pz6_A 204 NRNGIAEKYGVDVGLMLEPYSPLPIIEIPDIGTLSAVRLCEESNVSSLHDRAKLTQIKEICYTKGFYTGIMK--MGPFAG 281 (311)
T ss_dssp TGGGHHHHTTCCHHHHTTTSCCCCCEEBTTTBSSHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHCEEC--SSTTTT
T ss_pred ccHHHHHHcCCchHHhccCCCeEEEEecCCCCCccHHHHHHHhCCCCcchHHHHHHHHHHHHhccCCCCEEe--eeccCC
Confidence 664 66666542 24443 589999
Q ss_pred CchHHHHHHHHHHHHHcCCcccccc
Q 002136 368 LDRFEARKKLWSDLEETGLAVKKEP 392 (961)
Q Consensus 368 ~~~~~ar~~i~~~L~~~g~~~~~~~ 392 (961)
+++.+||++|.++|++.|..+....
T Consensus 282 ~~V~eAk~~i~~~L~~~g~a~~yyE 306 (311)
T 3pz6_A 282 QSVKDCKQSCRDLLVQNNQCIVYSE 306 (311)
T ss_dssp SBHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred eEHHHHHHHHHHHHHHCCCceEEcc
Confidence 9999999999999999999886543
No 30
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=99.91 E-value=1.8e-26 Score=272.86 Aligned_cols=127 Identities=17% Similarity=0.167 Sum_probs=94.6
Q ss_pred CCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCC--chHHHHHHHHHHHc--CCCccccCHHH
Q 002136 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAG--IATQLVVEKMLAAE--GIKRVELSRDE 165 (961)
Q Consensus 90 ~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~G--l~~q~~vek~l~~~--g~~~~~~~~~~ 165 (961)
+.|++.++ |+|||.|||||+++.+..|+++||.|++|++|.|+.|+|++| -.+...+.+ +.++ |.++.+++..
T Consensus 20 ~~yv~~tg-PsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~-a~~~~~G~~~~~~p~p- 96 (523)
T 1irx_A 20 EKYVVESG-ITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQ-EWKDYLGMPISEVPDP- 96 (523)
T ss_dssp SEEEEEEE-ECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCG-GGGGGTTSBGGGSCCT-
T ss_pred CeEEECCC-CCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHH-HHHHHcCCCcccCCcc-
Confidence 35766665 999999999999999999999999999999999999999999 222000001 1223 6665433311
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHH-HHHHHHHHHHhcC-ceEE
Q 002136 166 FTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSR-AVVEAFIRLHEKG-LIYQ 224 (961)
Q Consensus 166 f~~~~~~~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~-~v~~~F~~L~~~G-lIy~ 224 (961)
| ..|++|++++.+.|.+.|+.||+.+|+- .+++. |.. .+++++.+|.++| .||.
T Consensus 97 ~-~~~~~~~~~~~~~~~~~l~~Lgi~~D~~---~~se~-~~~g~~~~~i~~L~~~G~~iy~ 152 (523)
T 1irx_A 97 W-GCHESYAEHFMRKFEEEVEKLGIEVDLL---YASEL-YKRGEYSEEIRLAFEKRDKIME 152 (523)
T ss_dssp T-SSSSSHHHHHHHHHHHHHHTTTCCCEEE---EHHHH-HHTTTTHHHHHHHHHTHHHHHH
T ss_pred h-hhHHHHHHHHHHHHHHHHHHcCCCceEE---echhh-ccchHHHHHHHHHHHchHHHHH
Confidence 2 1356778899999999999999988842 23332 666 7899999999999 7764
No 31
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=99.83 E-value=5.4e-19 Score=210.32 Aligned_cols=145 Identities=17% Similarity=0.174 Sum_probs=103.0
Q ss_pred CCCCCCCCCCCCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCC--
Q 002136 79 GYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGI-- 156 (961)
Q Consensus 79 ~~f~~~~~~~~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~-- 156 (961)
.-|.......+++..|...-|||||++||||+++.++.|+++|+.+..||+|.+.....++|.++-..+.- +.+.|.
T Consensus 132 ~~~G~~~~~~~~~V~ve~~spN~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~G~Q~~~l~~~-~~~~g~~~ 210 (607)
T 1f7u_A 132 EDYGSCKLVENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVG-FERYGNEE 210 (607)
T ss_dssp GGTTCCCCSSCCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHH-HHHHCCHH
T ss_pred hhcCCCcccCCCeEEEEecCCCCCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCcchHHHHHHHH-HHHhCchh
Confidence 34544332345678898989999999999999999999999999999999999999999988765433211 111110
Q ss_pred --------------------------------CccccCHH----------HHHHHHHHHHHHHHHHHHHHHHHhCCccC-
Q 002136 157 --------------------------------KRVELSRD----------EFTKRVWEWKEKYGGTITSQIKRLGASCD- 193 (961)
Q Consensus 157 --------------------------------~~~~~~~~----------~f~~~~~~~~~~~~~~i~~~l~~lG~s~D- 193 (961)
...+..++ +.++..+++++.+.+.+++.+++||+.+|
T Consensus 211 ~~~~~~i~~l~~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~V~fD~ 290 (607)
T 1f7u_A 211 ALVKDPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDV 290 (607)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSE
T ss_pred hccCCChHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCccee
Confidence 00111111 11111234567888899999999999998
Q ss_pred CCCCccCCChhhH-HHHHHHHHHHHhcCceEEcCeee
Q 002136 194 WTRERFTLDEQLS-RAVVEAFIRLHEKGLIYQGSYMV 229 (961)
Q Consensus 194 w~r~~~T~d~~~~-~~v~~~F~~L~~~GlIy~~~~~v 229 (961)
|.++-+ |. ..+..++..|.++|++|..+..+
T Consensus 291 ~~~ES~-----~~~~~~~~vi~~L~~kG~~ye~dGa~ 322 (607)
T 1f7u_A 291 YSGESQ-----VSKESMLKAIDLFKEKGLTHEDKGAV 322 (607)
T ss_dssp EEEGGG-----CCHHHHHHHHHHHHHTTCEEEETTEE
T ss_pred ecCcch-----hhhhHHHHHHHHHHhCCCEEEECCcE
Confidence 655422 33 57899999999999999876554
No 32
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.06 E-value=8.3e-10 Score=127.80 Aligned_cols=94 Identities=29% Similarity=0.362 Sum_probs=67.9
Q ss_pred EEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 002136 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (961)
Q Consensus 93 ~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~ 172 (961)
+++=.||.|||.||||||++.++...+||- ..|.-++.+-=||.. +.
T Consensus 97 v~tRFaPsPtG~LHIGhaRtal~n~l~Ar~--~~G~~iLRieDtD~~------------------R~------------- 143 (553)
T 3aii_A 97 VVLRFAPNPSGPLHIGHARAAILNHEYARK--YDGRLILRIEDTDPR------------------RV------------- 143 (553)
T ss_dssp CEEEECCCSSSSCBHHHHHHHHHHHHHHHH--TTCEEEEEECCCCGG------------------GC-------------
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHHH--cCCEEEEEECcCCcc------------------cc-------------
Confidence 556667999999999999999987777772 244444444444421 00
Q ss_pred HHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCceEE
Q 002136 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (961)
Q Consensus 173 ~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~ 224 (961)
..+|.+.|.++|+.||+..| ..++ ..+|......+..+|.++|+.|.
T Consensus 144 -~~e~~~~I~edL~wLGl~wd--~~~~--qSdr~~~y~~~~~~Li~~G~AY~ 190 (553)
T 3aii_A 144 -DPEAYDMIPADLEWLGVEWD--ETVI--QSDRMETYYEYTEKLIERGGAYV 190 (553)
T ss_dssp -CTTHHHHHHHHHHHHTCCCS--EEEE--GGGGHHHHHHHHHHHHHTTSEEE
T ss_pred -cHHHHHHHHHHHHHcCCCCC--CCcc--cccCHHHHHHHHHHHHHcCCcee
Confidence 13467889999999997554 4333 34677888999999999999996
No 33
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=99.03 E-value=3.5e-09 Score=122.59 Aligned_cols=99 Identities=24% Similarity=0.248 Sum_probs=72.4
Q ss_pred CEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHH
Q 002136 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRV 170 (961)
Q Consensus 91 ~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~ 170 (961)
-++++-.+|+|||.|||||+++.++.|.+||. ..|+-++.+--+|. .+.
T Consensus 12 ~vv~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~--~~G~~iLRieDtD~------------------~r~----------- 60 (481)
T 2o5r_A 12 HMVRVRFAPSPTGFLHVGGARTALFNFLFARK--EKGKFILRIEDTDL------------------ERS----------- 60 (481)
T ss_dssp -CCEEEECCCCCSCCBHHHHHHHHHHHHHHHH--HTCEEEECBCCSSC------------------CSG-----------
T ss_pred eEEEEEECCCCCCCcCHHHHHHHHHHHHHHHH--cCCeEEEEEecCCc------------------ccc-----------
Confidence 36677778999999999999999999999998 67887777654442 011
Q ss_pred HHHHHHHHHHHHHHHHHhCCccCCC-------CCccCCChhhHHHHHHHHHHHHhcCceEEc
Q 002136 171 WEWKEKYGGTITSQIKRLGASCDWT-------RERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (961)
Q Consensus 171 ~~~~~~~~~~i~~~l~~lG~s~Dw~-------r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~ 225 (961)
...+.+.|.+.|+.||+..|=. -+|. ..++....+++..+|.++|.+|..
T Consensus 61 ---~~~~~~~I~~~l~wlGl~~de~p~~gg~~g~y~--QS~r~~~y~~~a~~L~~~G~aY~c 117 (481)
T 2o5r_A 61 ---EREYEEKLMESLRWLGLLWDEGPDVGGDHGPYR--QSERVEIYREHAERLVKEGKAYYV 117 (481)
T ss_dssp ---GGHHHHHHHHHHHHHTCCCSBBTTTBCTTCCCB--GGGGHHHHHHHHHHHHHTTSEEEE
T ss_pred ---HHHHHHHHHHHHHHcCCCCCCCcccCCCCCcee--eeccHHHHHHHHHHHHHCCCeeEe
Confidence 1345677889999999764411 0233 334566778899999999999853
No 34
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=98.90 E-value=1.9e-08 Score=116.45 Aligned_cols=92 Identities=27% Similarity=0.414 Sum_probs=65.7
Q ss_pred eCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHH
Q 002136 95 SMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWK 174 (961)
Q Consensus 95 ~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~~~ 174 (961)
+=.+|.|||.|||||+++.+....+||- ..|.-++.+-=||.. +. .
T Consensus 4 ~RFAPSPtG~lHiG~artal~n~l~Ar~--~~G~filRieDtD~~------------------R~--------------~ 49 (492)
T 2cfo_A 4 VRLAPSPTGNLHIGTARTAVFNWLYARH--RGGKFILRIEDTDRE------------------RS--------------R 49 (492)
T ss_dssp EEECCCTTSCCBHHHHHHHHHHHHHHHH--TTCEEEEEECCCSSS------------------SC--------------C
T ss_pred EEeCCCCCCCccHHHHHHHHHHHHHHHh--cCCeEEEEEeeCCcc------------------cc--------------c
Confidence 3347999999999999999987777763 345555555555531 11 1
Q ss_pred HHHHHHHHHHHHHhCCccCCCC-CccCCChhhHHHHHHHHHHHHhcCceEE
Q 002136 175 EKYGGTITSQIKRLGASCDWTR-ERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (961)
Q Consensus 175 ~~~~~~i~~~l~~lG~s~Dw~r-~~~T~d~~~~~~v~~~F~~L~~~GlIy~ 224 (961)
.++.+.|.++|+.||+ +|+. .|+ ..++....+.+..+|.++|++|.
T Consensus 50 ~~~~~~i~~dL~wLGl--~wde~~~~--QS~r~~~y~~~~~~Li~~G~AY~ 96 (492)
T 2cfo_A 50 PEYTENILEGLQWLGL--TWDEGPYF--QSDRLDLYRQAIQTLLDKGLAYY 96 (492)
T ss_dssp HHHHHHHHHHHHHTTC--CCSEEEEE--GGGCHHHHHHHHHHHHHTTSEEE
T ss_pred hHHHHHHHHHHHHcCC--CCCCCCcc--ccCCHHHHHHHHHHHHHCCCceE
Confidence 3567889999999996 5554 333 23455667888899999999996
No 35
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=98.84 E-value=1.8e-07 Score=112.92 Aligned_cols=95 Identities=21% Similarity=0.300 Sum_probs=69.3
Q ss_pred EEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 002136 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (961)
Q Consensus 93 ~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~ 172 (961)
+++=.+|.|||.||||||++.++...+||- ..|.-++.+-=||.. +.
T Consensus 67 v~tRFaPSPtG~LHIGhARtAL~n~l~Ar~--~gG~fiLRIEDTD~~------------------R~------------- 113 (851)
T 2hz7_A 67 VVTRFPPDPSGYAHLGHVFASLLDFNTARQ--YGGQFNLRMDDTNPE------------------LA------------- 113 (851)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHHHHHHHHH--TTCEEEEEECCCCTT------------------TC-------------
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHHH--cCCEEEEEECcCCcc------------------cc-------------
Confidence 445557999999999999999998888873 355555555555531 11
Q ss_pred HHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCceEE
Q 002136 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (961)
Q Consensus 173 ~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~ 224 (961)
..+|.+.|.++|+.||+..| ...++ ..+|......+..+|.++|+.|.
T Consensus 114 -~~e~~~~IledL~wLGl~wd-e~~~~--qSer~d~y~e~a~~LI~~G~AY~ 161 (851)
T 2hz7_A 114 -RQEYVDSIADDLKWLGLDWG-EHFYY--ASDYFDRYYAYAEQLIRQGDAYV 161 (851)
T ss_dssp -CHHHHHHHHHHHHHHTCCCT-TCEEE--GGGGHHHHHHHHHHHHHTTSEEE
T ss_pred -cHHHHHHHHHHHHHcCCCCC-CCccc--HhhhHHHHHHHHHHHHHCCCcEe
Confidence 14677889999999997554 23333 34677788899999999999996
No 36
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=98.81 E-value=2.6e-08 Score=117.76 Aligned_cols=96 Identities=22% Similarity=0.268 Sum_probs=70.0
Q ss_pred CEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHH
Q 002136 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRV 170 (961)
Q Consensus 91 ~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~ 170 (961)
++.+=.+ |.|||.|||||+++.++.+.+||. ..|.-++.+--||. .+.
T Consensus 129 ~v~~RFa-PsPTG~LHiG~artAl~n~l~Ar~--~~G~~ilRieDtD~------------------~r~----------- 176 (592)
T 3al0_C 129 LVRVRFA-PSPTGHLHVGGARTALFNWMFARK--EGGKFILRIEDTDT------------------ERS----------- 176 (592)
T ss_dssp CCEEEEC-CCSSSCCBHHHHHHHHHHHHHHHH--HTCEEEECBCCCCS------------------SSC-----------
T ss_pred eEEEEEC-CCCCCCccHHHHHHHHHHHHHHHh--cCCcEEEEecCcCh------------------hhc-----------
Confidence 4444454 999999999999999999999996 45766666644441 011
Q ss_pred HHHHHHHHHHHHHHHHHhCCccCCCCC---------ccCCChhhHHHHHHHHHHHHhcCceEEc
Q 002136 171 WEWKEKYGGTITSQIKRLGASCDWTRE---------RFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (961)
Q Consensus 171 ~~~~~~~~~~i~~~l~~lG~s~Dw~r~---------~~T~d~~~~~~v~~~F~~L~~~GlIy~~ 225 (961)
...+.+.|.++|+.||+. |+.. |+.+ ++....+.+..+|.++|++|..
T Consensus 177 ---~~~~~~~I~~dL~wlGl~--~D~~~~~gG~~gp~~qS--er~~~y~~~~~~L~~~G~aY~c 233 (592)
T 3al0_C 177 ---SREYEQQILESLRWCGLD--WDEGPDIGGDFGPYRQS--ERLEIYREYAEKLVEDKRAYYV 233 (592)
T ss_dssp ---CHHHHHHHHHHHHHTTCC--CSBBTTTBCTTCCCBST--TCHHHHHHHHHHHHHTTTEEEE
T ss_pred ---cHHHHHHHHHHHHHcCCC--CCCCCCcCCCCCCeeee--CCHHHHHHHHHHHHHcCCceEe
Confidence 145677899999999976 5442 3332 3446788999999999999874
No 37
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=98.80 E-value=1e-07 Score=110.09 Aligned_cols=94 Identities=20% Similarity=0.226 Sum_probs=68.3
Q ss_pred EeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 002136 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (961)
Q Consensus 94 i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~~ 173 (961)
.+=.+|-|||.|||||+++.+..-.+||- ..|.-++.+=-||.. +.
T Consensus 8 r~RFAPsPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLRieDtD~~------------------R~-------------- 53 (498)
T 2ja2_A 8 RVRFCPSPTGTPHVGLVRTALFNWAYARH--TGGTFVFRIEDTDAQ------------------RD-------------- 53 (498)
T ss_dssp EEEECCCSSSSCBHHHHHHHHHHHHHHHH--HTCEEEECBCCCCTT------------------TC--------------
T ss_pred eEEECcCCCCCccHHHHHHHHHHHHHHHH--cCCEEEEEECcCCCc------------------cc--------------
Confidence 34456999999999999999999999984 467555555444431 11
Q ss_pred HHHHHHHHHHHHHHhCCccCCCC---------CccCCChhhHHHHHHHHHHHHhcCceEEc
Q 002136 174 KEKYGGTITSQIKRLGASCDWTR---------ERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (961)
Q Consensus 174 ~~~~~~~i~~~l~~lG~s~Dw~r---------~~~T~d~~~~~~v~~~F~~L~~~GlIy~~ 225 (961)
..++.+.|.++|+.||+. |+. .|+ ..++...-+....+|.++|++|..
T Consensus 54 ~~~~~~~I~~~L~wlGl~--wDegp~~gG~~~~~~--QS~r~~~y~~~~~~L~~~g~aY~c 110 (498)
T 2ja2_A 54 SEESYLALLDALRWLGLD--WDEGPEVGGPYGPYR--QSQRAEIYRDVLARLLAAGEAYHA 110 (498)
T ss_dssp CHHHHHHHHHHHHHHTCC--CSBBTTTBCTTCCCB--GGGCHHHHHHHHHHHHHTTSEEEE
T ss_pred ChHHHHHHHHHHHHcCCC--cCCCcCcCCCCCCee--eecCHHHHHHHHHHHHHcCCeEEe
Confidence 135677899999999965 544 343 344566778889999999999963
No 38
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=98.77 E-value=5e-08 Score=112.31 Aligned_cols=93 Identities=23% Similarity=0.248 Sum_probs=67.5
Q ss_pred eCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHH
Q 002136 95 SMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWK 174 (961)
Q Consensus 95 ~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~~~ 174 (961)
+=.+|.|||.|||||+++.++.-.+||- ..|.-++.+--||.. +. .
T Consensus 4 ~RFaPsPtG~LHiG~~rtal~n~l~Ar~--~~G~filRieDtD~~------------------R~--------------~ 49 (468)
T 1j09_A 4 TRIAPSPTGDPHVGTAYIALFNYAWARR--NGGRFIVRIEDTDRA------------------RY--------------V 49 (468)
T ss_dssp EEECCCCSSSCBHHHHHHHHHHHHHHHH--TTCEEEECBCCCCTT------------------SC--------------C
T ss_pred EEeCCCCCCCccHHHHHHHHHHHHHHHH--cCCEEEEEeCcCCCc------------------cc--------------C
Confidence 3447999999999999999999988884 456555555455431 11 0
Q ss_pred HHHHHHHHHHHHHhCCccCCCCC---------ccCCChhhHHHHHHHHHHHHhcCceEEc
Q 002136 175 EKYGGTITSQIKRLGASCDWTRE---------RFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (961)
Q Consensus 175 ~~~~~~i~~~l~~lG~s~Dw~r~---------~~T~d~~~~~~v~~~F~~L~~~GlIy~~ 225 (961)
.++.+.|.++|+.||+. |+.. |+ ..++...-+.+..+|.++|++|..
T Consensus 50 ~~~~~~I~~dl~wlGl~--wd~~~~~gG~~gp~~--QS~r~~~y~~~~~~L~~~G~aY~c 105 (468)
T 1j09_A 50 PGAEERILAALKWLGLS--YDEGPDVGGPHGPYR--QSERLPLYQKYAEELLKRGWAYRA 105 (468)
T ss_dssp TTHHHHHHHHHHHTTCC--CSBBTTTBCTTCCCB--GGGCHHHHHHHHHHHHHHTSEEEE
T ss_pred hHHHHHHHHHHHHcCCC--CCCCCCCCCCCCCee--ccCCHHHHHHHHHHHHHcCCeEEc
Confidence 24667899999999965 5543 33 345566778899999999999964
No 39
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=98.76 E-value=4.2e-07 Score=105.38 Aligned_cols=95 Identities=26% Similarity=0.365 Sum_probs=68.0
Q ss_pred EEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 002136 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (961)
Q Consensus 93 ~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~ 172 (961)
+++-.+|.|||.||||||++.++...+|| ...|.-++.+-=||.. + .
T Consensus 27 v~tRFaPSPtG~LHIGhaRtal~n~l~Ar--~~gG~fiLRieDTD~~------------------R--~----------- 73 (553)
T 1qtq_A 27 VHTRFPPEPNGYLHIGHAKSICLNFGIAQ--DYKGQCNLRFDDTNPV------------------K--E----------- 73 (553)
T ss_dssp CEEEECCCTTSCCBHHHHHHHHHHHHHHH--HTTCEEEEEECCCCGG------------------G--C-----------
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEECCCCch------------------h--c-----------
Confidence 45566799999999999999999888887 3456555555555531 0 0
Q ss_pred HHHHHHHHHHHHHHHhCCccCCCCCccCCChhhHHHHHHHHHHHHhcCceEE
Q 002136 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (961)
Q Consensus 173 ~~~~~~~~i~~~l~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~ 224 (961)
..++.+.|.++|+.||+..|- ..++. .+|.........+|.++|+.|.
T Consensus 74 -~~e~~~~I~edL~wLGl~wde-~~~~q--Ser~~~~~~~a~~Li~~G~AY~ 121 (553)
T 1qtq_A 74 -DIEYVESIKNDVEWLGFHWSG-NVRYS--SDYFDQLHAYAIELINKGLAYV 121 (553)
T ss_dssp -CHHHHHHHHHHHHHTTCCCSS-SCEEG--GGGHHHHHHHHHHHHHTTSEEE
T ss_pred -CHHHHHHHHHHHHHcCCCCCC-CCeeh--cccHHHHHHHHHHHHHCCCcee
Confidence 145778899999999976552 33332 3455555666679999999996
No 40
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=98.71 E-value=3.8e-07 Score=105.40 Aligned_cols=94 Identities=22% Similarity=0.245 Sum_probs=68.8
Q ss_pred EeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 002136 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (961)
Q Consensus 94 i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~~ 173 (961)
.+=.+|.|||.|||||+++.+..-.+||- ..|.-++.+==||.. +.
T Consensus 27 ~~RFAPsPtG~LHiG~~rtal~n~l~Ar~--~~G~filRieDtD~~------------------R~-------------- 72 (488)
T 3afh_A 27 RVRFAPSPTGHLHVGGARTALFNWMFARK--EGGKFILRIEDTDTE------------------RS-------------- 72 (488)
T ss_dssp EEEECCCCSSSCBHHHHHHHHHHHHHHHH--HTCEEEECBCCCCTT------------------TC--------------
T ss_pred eEEECCCCCCCccHHHHHHHHHHHHHHHH--cCCEEEEEEeeCCcc------------------cc--------------
Confidence 44556999999999999999998888875 456555555555431 11
Q ss_pred HHHHHHHHHHHHHHhCCccCCCCC---------ccCCChhhHHHHHHHHHHHHhcCceEEc
Q 002136 174 KEKYGGTITSQIKRLGASCDWTRE---------RFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (961)
Q Consensus 174 ~~~~~~~i~~~l~~lG~s~Dw~r~---------~~T~d~~~~~~v~~~F~~L~~~GlIy~~ 225 (961)
..++.+.|.++|+.||+. |+.. |+. .++....+.+..+|.++|++|..
T Consensus 73 ~~~~~~~I~~dL~wlGl~--wDe~~~~gG~~gp~~Q--Ser~~~y~~~~~~L~~~G~aY~c 129 (488)
T 3afh_A 73 SREYEQQILESLRWCGLD--WDEGPDIGGDFGPYRQ--SERLEIYREYAEKLVEDKRAYYV 129 (488)
T ss_dssp CHHHHHHHHHHHHHTTCC--CSBBTTTBCTTCCCBG--GGCHHHHHHHHHHHHHTTSEEEE
T ss_pred cHHHHHHHHHHHHHcCCC--CCcCCCCCCCCCCeee--eCCHHHHHHHHHHHHHcCCeEec
Confidence 135677899999999975 5542 333 34556788999999999999874
No 41
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=98.59 E-value=1e-06 Score=101.25 Aligned_cols=94 Identities=24% Similarity=0.319 Sum_probs=70.3
Q ss_pred EeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 002136 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (961)
Q Consensus 94 i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~~ 173 (961)
.+=.+|.|||.|||||+++.+....++|. ..|.-++.+--+|.. +.
T Consensus 27 ~~RFAPSPTG~lHiG~~rtal~n~l~Ar~--~~G~filRieDtD~~------------------R~-------------- 72 (490)
T 4g6z_A 27 RTRFAPSPTGFIHLGNIRSALYPWAFARK--MKGTFVLRIEDTDVE------------------RS-------------- 72 (490)
T ss_dssp EEEECCCCCSCCBHHHHHHHHHHHHHHHH--TTCEEEEEECCCCGG------------------GC--------------
T ss_pred eEEeCCCCCCCccHHHHHHHHHHHHHHHh--cCCeEEEEeCCCCcc------------------cc--------------
Confidence 34446999999999999999999999985 367667766666631 00
Q ss_pred HHHHHHHHHHHHHHhCCccCCCCC-ccCCChhhHHHHHHHHHHHHhcCceEEc
Q 002136 174 KEKYGGTITSQIKRLGASCDWTRE-RFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (961)
Q Consensus 174 ~~~~~~~i~~~l~~lG~s~Dw~r~-~~T~d~~~~~~v~~~F~~L~~~GlIy~~ 225 (961)
..++.+.|.++|+.||+. |+.. |. ..++....+.+..+|.++|++|..
T Consensus 73 ~~~~~~~i~~dl~wlGl~--~d~~~~~--qS~r~~~y~~~~~~Li~~G~aY~C 121 (490)
T 4g6z_A 73 SQEAVDAILEGMAWLGLD--YDEGPYY--QMQRMDRYREVLAQMQEKGLVYPC 121 (490)
T ss_dssp CHHHHHHHHHHHHHTTCC--CSEEEEE--GGGCHHHHHHHHHHHHHTTSEEEE
T ss_pred cHHHHHHHHHHHHHcCCC--CCCCCcc--cccCHHHHHHHHHHHHHCCCEEeC
Confidence 135778899999999975 5442 33 345667778999999999999864
No 42
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=97.76 E-value=2.9e-05 Score=84.27 Aligned_cols=94 Identities=29% Similarity=0.361 Sum_probs=63.5
Q ss_pred EeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 002136 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (961)
Q Consensus 94 i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~~ 173 (961)
++=.+|.|||.|||||+++.+....++| ++++.|+.=+|+.--+ + .
T Consensus 7 ~~RFAPsPtG~LHiG~~rtal~n~l~Ar-----~~~g~~ilRieDtD~~---------------R-~------------- 52 (298)
T 1nzj_A 7 IGRFAPSPSGELHFGSLIAALGSYLQAR-----ARQGRWLVRIEDIDPP---------------R-E------------- 52 (298)
T ss_dssp EEEECCCTTSCCCHHHHHHHHHHHHHHH-----HTTCEEEEEECCSCGG---------------G-S-------------
T ss_pred EEEECcCCCCCccHHHHHHHHHHHHHHH-----hcCCeEEEEEecCCch---------------h-h-------------
Confidence 3445699999999999999986665555 3444444333332111 0 0
Q ss_pred HHHHHHHHHHHHHHhCCccCCCC-CccCCChhhHHHHHHHHHHHHhcCceEEc
Q 002136 174 KEKYGGTITSQIKRLGASCDWTR-ERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (961)
Q Consensus 174 ~~~~~~~i~~~l~~lG~s~Dw~r-~~~T~d~~~~~~v~~~F~~L~~~GlIy~~ 225 (961)
..++.+.|.++|+.||+..| . .++. .++....+++..+|.++|++|..
T Consensus 53 ~~~~~~~I~~dL~~LGl~~D--~~~~~q--Ser~~~y~~~~~~L~~~G~aY~c 101 (298)
T 1nzj_A 53 VPGAAETILRQLEHYGLHWD--GDVLWQ--SQRHDAYREALAWLHEQGLSYYC 101 (298)
T ss_dssp CTTHHHHHHHHHHHTTCCCS--SCCEEG--GGCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHcCCCCC--CCCeee--eCCHHHHHHHHHHHHHcCCcccC
Confidence 03467789999999997655 3 2332 24567788999999999999963
No 43
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=97.13 E-value=0.00057 Score=75.23 Aligned_cols=74 Identities=18% Similarity=0.092 Sum_probs=53.4
Q ss_pred cCCcceEeeeccccccHHHHHHHHHhHhcCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHhC
Q 002136 537 FYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLG 616 (961)
Q Consensus 537 ~~P~d~~~~G~Dil~fw~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~ 616 (961)
.|.+++.+.|.||..... ...-+.-.+....| .++.|+++.+.+|+|||||.||+|++.| .+|++|..+.++
T Consensus 168 ~~~~~~v~~G~DQ~~~~~-l~rdla~~~~~~~p--~~l~~pll~~l~G~KMSKS~~n~I~l~d-----~p~~i~~Ki~~a 239 (323)
T 2cyb_A 168 HLGVDLAVGGIDQRKIHM-LARENLPRLGYSSP--VCLHTPILVGLDGQKMSSSKGNYISVRD-----PPEEVERKIRKA 239 (323)
T ss_dssp HTTCSEEEEEGGGHHHHH-HHHHHGGGGTCCCC--EEEEECCCBCTTSSBCCTTTTCSCBTTC-----CHHHHHHHHHTS
T ss_pred hcCCCEEEechhhHHHHH-HHHHHHHhcCCCCc--eEEecCcccCCCCCcccCCcCceeCCCC-----CHHHHHHHHHhc
Confidence 357899999999965311 11111222333345 3677899999999999999999999987 599999999875
Q ss_pred CC
Q 002136 617 TA 618 (961)
Q Consensus 617 ~~ 618 (961)
-.
T Consensus 240 ~t 241 (323)
T 2cyb_A 240 YC 241 (323)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 44
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=97.12 E-value=0.00079 Score=78.66 Aligned_cols=97 Identities=23% Similarity=0.206 Sum_probs=66.2
Q ss_pred eCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHH
Q 002136 95 SMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWK 174 (961)
Q Consensus 95 ~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~~~ 174 (961)
+=.+|.|||.||||||++.++.-.+||- ..|.=++.+==||. ++. +
T Consensus 27 tRFAPsPtG~LHiG~artAl~n~~~Ar~--~~G~fiLRieDtD~------------------~R~--------------~ 72 (512)
T 4gri_A 27 VRYAPSPTGLQHIGGIRTALFNYFFAKS--CGGKFLLRIEDTDQ------------------SRY--------------S 72 (512)
T ss_dssp EEECCCSSSCCBHHHHHHHHHHHHHHHH--TTCEEEECBCCCCT------------------TSC--------------C
T ss_pred EEeCcCCCCcccHHHHHHHHHHHHHHHH--cCCEEEEEeCcCCC------------------CcC--------------C
Confidence 4457999999999999999999999874 45655554434432 111 1
Q ss_pred HHHHHHHHHHHHHhCCccCCCC----CccC-CChhhHHHHHHHHHHHHhcCceEEc
Q 002136 175 EKYGGTITSQIKRLGASCDWTR----ERFT-LDEQLSRAVVEAFIRLHEKGLIYQG 225 (961)
Q Consensus 175 ~~~~~~i~~~l~~lG~s~Dw~r----~~~T-~d~~~~~~v~~~F~~L~~~GlIy~~ 225 (961)
.++.+.|.++|+.||+..|-.- +|.. ...++...-++...+|.++|++|..
T Consensus 73 ~~~~~~I~~~L~wlGl~wDe~p~~~g~~~py~QS~r~~~Y~~~~~~L~~~G~aY~C 128 (512)
T 4gri_A 73 PEAENDLYSSLKWLGISFDEGPVVGGDYAPYVQSQRSAIYKQYAKYLIESGHAYYC 128 (512)
T ss_dssp HHHHHHHHHHHHHHTCCCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHcCCCCCcCCccCCCCCCccccchHHHHHHHHHHHHHcCCcccc
Confidence 3566789999999998766211 1111 1233445567788899999999864
No 45
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=95.70 E-value=0.056 Score=47.27 Aligned_cols=68 Identities=18% Similarity=0.408 Sum_probs=57.6
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002136 888 VDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRST 956 (961)
Q Consensus 888 id~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~ 956 (961)
+...+|++.|+++|++|+.+++.++..|++|+|-.+ +.+.+.....++++++.+|..+.++=..|.++
T Consensus 18 ykeqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~-d~~~~~~l~~~l~~~e~eLe~~~erWeeLe~~ 85 (89)
T 2lw1_A 18 YKLQRELEQLPQLLEDLEAKLEALQTQVADASFFSQ-PHEQTQKVLADMAAAEQELEQAFERWEYLEAL 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457889999999999999999999999999998765 45566777888899999999888876666654
No 46
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=95.38 E-value=0.012 Score=64.50 Aligned_cols=72 Identities=15% Similarity=-0.008 Sum_probs=50.7
Q ss_pred CCcceEeeeccccccH-HHHHHHHHhHhcCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHh
Q 002136 538 YPTTMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISL 615 (961)
Q Consensus 538 ~P~d~~~~G~Dil~fw-~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~ 615 (961)
+++++.+.|.||.... ..|-++. .+....| ..+.+.++...+|+|||||.||.|+..| ++..++.++=.+.+
T Consensus 190 ~~~~v~~gG~DQ~~~i~l~rdla~--r~n~~~~--~~l~~pll~gldG~KMSKS~~n~I~L~d--~~tsp~~~~~ki~~ 262 (322)
T 2yxn_A 190 YGVVLCIGGSDQWGNITSGIDLTR--RLHQNQV--FGLTVPLITKADGTKFGKTEGGAVWLDP--KKTSPYKFYQFWIN 262 (322)
T ss_dssp HCEEEEEECTTCHHHHHHHHHHHH--HHHCCCC--EEEECCCCBCTTSCBTTEETTEECBSST--TTSCHHHHHHHHHT
T ss_pred CCceEEecCchhHHHHHHHHHHHH--HhCCCCc--eeeccCccCCCCcccccCCCCCeeeccC--CCCCHHHHHHHHhC
Confidence 3789889999996532 2222222 2333344 4557888888899999999999999988 66777777766654
No 47
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=95.32 E-value=0.012 Score=66.71 Aligned_cols=72 Identities=11% Similarity=-0.047 Sum_probs=49.6
Q ss_pred CCcceEeeeccccccHH-HHHHHHHhHh-cCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHh
Q 002136 538 YPTTMLETGHDILFFWV-ARMVMMGIEF-TGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISL 615 (961)
Q Consensus 538 ~P~d~~~~G~Dil~fw~-~~~i~~~~~l-~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~ 615 (961)
|.+++...|.||..... .|-++ -.+ .+..| ..+.+.++...+|+|||||.||.|+..| +...++.++=++.+
T Consensus 185 ~~~~i~~gG~DQ~~ni~~grdla--~r~~~~~~~--~~l~~pll~~ldG~KMSKS~~naI~L~d--~~tsp~~i~~ki~~ 258 (420)
T 1jil_A 185 LNCKIQVGGSDQWGNITSGIELM--RRMYGQTDA--YGLTIPLVTKSDGKKFGKSESGAVWLDA--EKTSPYEFYQFWIN 258 (420)
T ss_dssp HCEEEEEEEGGGHHHHHHHHHHH--HHHHCCCCC--EEEEECCCBCTTSCBTTBCSSSBCBSST--TTSCHHHHHHHHHT
T ss_pred CCCcEEeccHHHHHHHHHHHHHH--HHhcCCCCe--eEeecccccCCccccccCCCCCeEecCC--CCCCHHHHHHHHhc
Confidence 47899999999965422 12222 223 33333 4667889989999999999999999877 34566666666655
No 48
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=95.15 E-value=0.015 Score=65.36 Aligned_cols=75 Identities=17% Similarity=-0.002 Sum_probs=46.5
Q ss_pred CCcceEeeeccccccHH-HHHHHHHhHh-c----------CC---CCceEEEEeceEEcCCCccccccCCCccCchhhhh
Q 002136 538 YPTTMLETGHDILFFWV-ARMVMMGIEF-T----------GS---VPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIK 602 (961)
Q Consensus 538 ~P~d~~~~G~Dil~fw~-~~~i~~~~~l-~----------~~---~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~ 602 (961)
+.+++.+.|.||..... .|-++.-... . -+ .| ...+.+.++...+|+|||||.||.|+..|-
T Consensus 231 ~~~~i~~gG~DQ~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~~~~-~~~l~~pll~~ldG~KMSKS~~naI~L~d~-- 307 (392)
T 1y42_X 231 QGVQMQIGGSDQYGNIISGLEVVKAARESEPDPQERKYVTPKTALDE-CVGFTVPLLTDSSGAKFGKSAGNAIWLDPY-- 307 (392)
T ss_dssp HCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSGGGS-CEEEECCCCBCTTCCBTTBCSSSBCBSSTT--
T ss_pred CCccEEecCcchHhHHHHHHHHHHHHhhhccccccccccccccccCC-ccccccccCcCCchhhccCCCCCeeeccCC--
Confidence 37999999999954311 1112111100 0 00 12 245678888899999999999999998772
Q ss_pred hcChhHHHHHHHh
Q 002136 603 EFGADALRFTISL 615 (961)
Q Consensus 603 ~yGaDalR~~L~~ 615 (961)
.-+++.++=++.+
T Consensus 308 ~tsp~~i~qki~~ 320 (392)
T 1y42_X 308 QTSVFDFYGYFVR 320 (392)
T ss_dssp TSCHHHHHHHHHT
T ss_pred CCCHHHHHHHHHc
Confidence 2456655555554
No 49
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=95.05 E-value=0.02 Score=63.09 Aligned_cols=73 Identities=23% Similarity=0.326 Sum_probs=50.0
Q ss_pred CCcceEeeecccccc-HHHHHHHHHhHh-cC---CCCceEEEE-eceEEcCCCccccccCCCccCchhhhhhcChhHHHH
Q 002136 538 YPTTMLETGHDILFF-WVARMVMMGIEF-TG---SVPFSHVYL-HGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRF 611 (961)
Q Consensus 538 ~P~d~~~~G~Dil~f-w~~~~i~~~~~l-~~---~~Pfk~v~~-hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~ 611 (961)
|-+++...|.||... =.+|-++..+.. .| ..| ..++. +.++...+|+|||||.||.|+..| .++.++=
T Consensus 152 ~~~~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P-~~~~~~~~~l~gldG~KMSKS~~n~I~L~d-----sp~~i~~ 225 (340)
T 2g36_A 152 YKAEGVPVGEDQVYHIELTREIARRFNYLYDEVFPEP-EAILSRVPKLPGTDGRKMSKSYGNIINLEI-----SEKELEQ 225 (340)
T ss_dssp TTCSEEEECGGGHHHHHHHHHHHHHHHHHSCCCCCCC-EEEECCSCCCCCTTSSCCCGGGTCCCBTTC-----CHHHHHH
T ss_pred hCCCEEEcccchHHHHHHHHHHHHHhhhhcccccCCc-hhhhccccccCCCCccccCCCCCCeEeeeC-----CHHHHHH
Confidence 568899999999753 223333332221 13 345 44444 578888899999999999999887 7777777
Q ss_pred HHHhC
Q 002136 612 TISLG 616 (961)
Q Consensus 612 ~L~~~ 616 (961)
.+...
T Consensus 226 Ki~~a 230 (340)
T 2g36_A 226 TILRM 230 (340)
T ss_dssp HHHTC
T ss_pred HHHhC
Confidence 77654
No 50
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=95.04 E-value=0.018 Score=65.20 Aligned_cols=72 Identities=15% Similarity=0.033 Sum_probs=49.5
Q ss_pred CCcceEeeeccccccHH-HHHHHHHhHhcCCCCceEEEEeceEEcCCCccccccCCC-ccCchhhhhhcChhHHHHHHHh
Q 002136 538 YPTTMLETGHDILFFWV-ARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGN-VIDPIDTIKEFGADALRFTISL 615 (961)
Q Consensus 538 ~P~d~~~~G~Dil~fw~-~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GN-vI~p~dii~~yGaDalR~~L~~ 615 (961)
|.+++...|.||..... .|-++ -.+.+..| ..+.+.++...+|+|||||.|| .|+..| ++..++.++=++.+
T Consensus 186 ~~~~i~~gG~DQ~~ni~lgrdla--rr~~~~~~--~~l~~plL~~ldG~KMSKS~~nsaI~L~d--~~tsp~~i~qki~~ 259 (432)
T 2jan_A 186 HGCTLQIGGADQWGNIIAGVRLV--RQKLGATV--HALTVPLVTAADGTKFGKSTGGGSLWLDP--QMTSPYAWYQYFVN 259 (432)
T ss_dssp HCCCEEEECSTTHHHHHHHHHHH--HHHHCCCC--EEEECCCCBCTTSCBTTBCSSSCBCBSST--TTSCHHHHHHHHHT
T ss_pred CCCcEEeccHHHHHHHHHHHHHH--HHhCCCCc--cccccccccCCCcCcCCCCCCCCeEEccC--CCCCHHHHHHHHhc
Confidence 47899999999965422 22222 22334434 4567888888999999999999 998876 34566666666655
No 51
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=94.95 E-value=0.013 Score=66.19 Aligned_cols=72 Identities=11% Similarity=-0.081 Sum_probs=48.4
Q ss_pred CCcceEeeeccccccHH-HHHHHHHhHh-cCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHh
Q 002136 538 YPTTMLETGHDILFFWV-ARMVMMGIEF-TGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISL 615 (961)
Q Consensus 538 ~P~d~~~~G~Dil~fw~-~~~i~~~~~l-~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~ 615 (961)
|.+++...|.||..... .|-++ -.+ .+..| ..+.+.++...+|+|||||.||.|+..| +...++.++=++.+
T Consensus 184 ~~~~i~~gG~DQ~~ni~lgrdla--rr~~~~~~~--~~lt~pll~~ldG~KMSKS~~naI~L~d--~~tsp~~i~qki~~ 257 (419)
T 2ts1_A 184 EGCRLQIGGSDQWGNITAGLELI--RKTKGEARA--FGLTIPLVTKADGTKFGKTESGTIWLDK--EKTSPYEFYQFWIN 257 (419)
T ss_dssp HCEEEEEEEGGGHHHHHHHHHHH--HHHHC--CC--EEEEECCCCCTTSCCTTCCSSCCCBSST--TTSCHHHHHHHHHT
T ss_pred CCCcEEeccHHHHHHHHHHHHHH--HHhcCCCCe--eecccccccCCCcccccCCCCCeEecCC--CCCCHHHHHHHHhc
Confidence 47899999999965422 12122 223 33333 4667888888999999999999999876 34566666655554
No 52
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=94.83 E-value=0.033 Score=63.32 Aligned_cols=69 Identities=28% Similarity=0.338 Sum_probs=48.3
Q ss_pred CcceEeeeccccccHH-HHHHHHHhHhcCCCCceEEEEeceEEcCCCc-cccccCCCccCchhhhhhcChhHHHHHHHhC
Q 002136 539 PTTMLETGHDILFFWV-ARMVMMGIEFTGSVPFSHVYLHGLIRDSQGR-KMSKTLGNVIDPIDTIKEFGADALRFTISLG 616 (961)
Q Consensus 539 P~d~~~~G~Dil~fw~-~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G~-KMSKS~GNvI~p~dii~~yGaDalR~~L~~~ 616 (961)
.+++...|.||..... .|-++ -.+ +..| ..++.+.++...+|. |||||.||.|+..| .++.++=++.+.
T Consensus 187 ~~~l~~gG~DQ~~ni~l~rdla--rr~-~~~~-~~~lt~pll~gldG~~KMSKS~~n~I~L~d-----sp~~i~~Ki~~~ 257 (432)
T 1h3f_A 187 RADVEMGGTDQRFNLLVGREVQ--RAY-GQSP-QVCFLMPLLVGLDGREKMSKSLDNYIGLTE-----PPEAMFKKLMRV 257 (432)
T ss_dssp TCSEEEEEGGGHHHHHHHHHHH--HHT-TCCC-CEEEEECCCBCTTSSSBCCGGGTCCCBTTS-----CHHHHHHHHHTS
T ss_pred CccEEEechHHHHHHHHHHHHH--HHh-CCCC-ceEeecccccCCCCccccCcCCCCeeCCCC-----CHHHHHHHHhCC
Confidence 3889999999964321 12122 122 3334 356678899889996 99999999999888 777777766653
No 53
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=94.81 E-value=0.012 Score=65.20 Aligned_cols=72 Identities=19% Similarity=0.100 Sum_probs=37.7
Q ss_pred CCcceEeeeccccccHH-HHHHHHHhHhcCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhhcChhHHHHHHHh
Q 002136 538 YPTTMLETGHDILFFWV-ARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISL 615 (961)
Q Consensus 538 ~P~d~~~~G~Dil~fw~-~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~L~~ 615 (961)
+.+++...|.||..... .|-++ -.+.+..| -.+.+.++...+|+|||||.||.|+..| ++..++.++=++.+
T Consensus 209 ~~~~i~p~G~DQ~~~i~l~rdla--~r~n~~~~--~~l~~pll~~ldG~KMSKS~~naI~L~d--~~tsp~~i~~ki~~ 281 (356)
T 2pid_A 209 YGCRVQLGGSDQLGNIMSGYEFI--NKLTGEDV--FGITVPLITSTTGAKLGKSAGNAVWLNR--DKTSPFELYQFFVR 281 (356)
T ss_dssp HCCCEEEEEGGGHHHHHHHHHHH--HHHSSCCC--EEEEECCCC-------------CCBSST--TTSCHHHHHHHHHT
T ss_pred CCCcEEeccHHHHHHHHHHHHHH--HHhCCCCc--cccccccccCCCcccccCCCCCeeeccC--CCCCHHHHHHHHHc
Confidence 37899999999965322 22222 22333344 4566788888899999999999999887 35677777776665
No 54
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=94.74 E-value=0.013 Score=64.01 Aligned_cols=73 Identities=25% Similarity=0.353 Sum_probs=48.5
Q ss_pred CCcceEeeeccccccH-HHHHHHHHhHh-cC---CCCceEEE--EeceEEcCCCccccccCCCccCchhhhhhcChhHHH
Q 002136 538 YPTTMLETGHDILFFW-VARMVMMGIEF-TG---SVPFSHVY--LHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALR 610 (961)
Q Consensus 538 ~P~d~~~~G~Dil~fw-~~~~i~~~~~l-~~---~~Pfk~v~--~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR 610 (961)
|-+++...|.||.... .+|-++.-+.. .| ..| +.++ .+.++...+|+|||||.||.|+..| .++.++
T Consensus 138 ~~~~~vpvG~DQ~~hi~l~Rdia~r~n~~~g~~f~~P-~~~~~~~~~~l~~l~G~KMSKS~~n~I~L~d-----~p~~i~ 211 (322)
T 3tzl_A 138 FDTRIVPVGKDQIQHVEIARDIALKVNNEWGEIFTLP-EARVNEEVAVVVGTDGAKMSKSYQNTIDIFS-----SEKTLK 211 (322)
T ss_dssp TTCSEEECCGGGHHHHHHHHHHHHHHHHHHCSCSCCC-EEECCCSSCCCBCTTSSBCCGGGTCCCBSSC-----CHHHHH
T ss_pred hCCcEEEeccchHHHHHHHHHHHHHhcccccCCCCCc-hhhhccccccccCCCCCcCCCCCCCceecCC-----CHHHHH
Confidence 5678899999997532 33333332211 11 244 4444 3678888999999999999998876 567777
Q ss_pred HHHHhC
Q 002136 611 FTISLG 616 (961)
Q Consensus 611 ~~L~~~ 616 (961)
=.+.++
T Consensus 212 ~KI~~a 217 (322)
T 3tzl_A 212 KQISSI 217 (322)
T ss_dssp HHHHTC
T ss_pred HHHHhc
Confidence 666553
No 55
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=94.10 E-value=0.029 Score=62.67 Aligned_cols=69 Identities=16% Similarity=0.137 Sum_probs=39.9
Q ss_pred CCcceEeeeccccccHH-HHHHHHHhHhcCCCCceEEEEeceEEcCCCccccccCCC-ccCchhhhhhcChhHHHHHHHh
Q 002136 538 YPTTMLETGHDILFFWV-ARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGN-VIDPIDTIKEFGADALRFTISL 615 (961)
Q Consensus 538 ~P~d~~~~G~Dil~fw~-~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GN-vI~p~dii~~yGaDalR~~L~~ 615 (961)
|.+++.+.|.||..... .|-++ -.+....| ..+.+.++...+|+|||||.|| .|+..|- ++.++=.+.+
T Consensus 177 ~~a~~v~~G~DQ~~~~~l~rdl~--~r~~~~~p--~~l~~pll~gldG~KMSKS~~ns~I~L~d~-----p~~i~kKi~~ 247 (372)
T 1n3l_A 177 LKVDAQFGGIDQRKIFTFAEKYL--PALGYSKR--VHLMNPMVPGLTGSKMSSSEEESKIDLLDR-----KEDVKKKLKK 247 (372)
T ss_dssp TTCSEEEEEGGGHHHHHHHHHHG--GGGTCCCC--EEEEECCCCCSSCC-------CCSCBTTCC-----HHHHHHHHHT
T ss_pred hcCCEEEcChhHHHHHHHHHHHH--HHcCCCCC--EEEecCccCCCCcccccCCCCCCeEeccCC-----HHHHHHHHHH
Confidence 56788899999965422 11121 12222345 4556889989999999999999 7887763 6777666655
No 56
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=93.42 E-value=0.042 Score=60.49 Aligned_cols=72 Identities=24% Similarity=0.379 Sum_probs=47.1
Q ss_pred CCcceEeeeccccccH-HHHHHHHHhH-hcC---CCCceEEEEe---ceEEcCCC-ccccccCCCccCchhhhhhcChhH
Q 002136 538 YPTTMLETGHDILFFW-VARMVMMGIE-FTG---SVPFSHVYLH---GLIRDSQG-RKMSKTLGNVIDPIDTIKEFGADA 608 (961)
Q Consensus 538 ~P~d~~~~G~Dil~fw-~~~~i~~~~~-l~~---~~Pfk~v~~h---g~v~d~~G-~KMSKS~GNvI~p~dii~~yGaDa 608 (961)
|-+++...|.||.... ..|-++..+. ..| ..| ..+++ .++...+| +|||||.||.|+..|- ++.
T Consensus 140 ~~~~lvp~G~DQ~~~i~l~rdla~r~n~~~g~~f~~P--~~~~~~~~p~l~gldG~~KMSKS~~n~I~L~d~-----p~~ 212 (337)
T 2el7_A 140 YKADTVPVGEDQVQHIELTREIARRFNHLFGETFPEP--QALLNPEAPRVPGIDGKAKMSKSLGNTIGLLEP-----EES 212 (337)
T ss_dssp TTCCEEECCGGGCHHHHHHHHHHHHHHHHHSSCCCCC--EEECCTTSCCCBCTTSSSBCCTTTTCCCBSSSC-----HHH
T ss_pred hCCcEEEcccchHHHHHHHHHHHHHHHhhcCcccCCC--eeecccccccccCCCCccccCCCCCCeeeCcCC-----HHH
Confidence 5688999999997642 2232332211 113 345 33333 58888999 9999999999988773 677
Q ss_pred HHHHHHhC
Q 002136 609 LRFTISLG 616 (961)
Q Consensus 609 lR~~L~~~ 616 (961)
++=.+.+.
T Consensus 213 i~~Ki~~a 220 (337)
T 2el7_A 213 IWQKIQHL 220 (337)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhC
Confidence 77666654
No 57
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=93.35 E-value=0.042 Score=60.80 Aligned_cols=72 Identities=25% Similarity=0.300 Sum_probs=46.8
Q ss_pred CCcceEeeecccccc-HHHHHHHHHhH-hcC---CCCceEEEE-eceEEcCCCc-cccccCCCccCchhhhhhcChhHHH
Q 002136 538 YPTTMLETGHDILFF-WVARMVMMGIE-FTG---SVPFSHVYL-HGLIRDSQGR-KMSKTLGNVIDPIDTIKEFGADALR 610 (961)
Q Consensus 538 ~P~d~~~~G~Dil~f-w~~~~i~~~~~-l~~---~~Pfk~v~~-hg~v~d~~G~-KMSKS~GNvI~p~dii~~yGaDalR 610 (961)
|-+++...|.||... =..|-++.-+. ..| ..| .-++. +.++...+|. |||||.||.|+..|- ++.++
T Consensus 161 ~~~~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P-~~~~~~~~~l~~ldG~~KMSKS~~n~I~L~d~-----p~~i~ 234 (351)
T 1yi8_B 161 FGATLVPVGDDQLPMLEQTREIVRRFNALYAPVLAEP-QAQLSRVPRLPGLDGQAKMSKSLGNAIALGDS-----ADEVA 234 (351)
T ss_dssp HTCSEEEECGGGHHHHHHHHHHHHHHHHHTCSCSCCC-EEEECSSCSCCCTTSSSCCCTTTTCCCBTTCC-----HHHHH
T ss_pred cCCCEEEecCCcHHHHHHHHHHHHHHHhhcccccCCC-eeeeecCccccCCCCccccCCCCCCeecCCCC-----HHHHH
Confidence 557899999999753 22233332221 123 345 44454 5788888997 999999999987763 66666
Q ss_pred HHHHh
Q 002136 611 FTISL 615 (961)
Q Consensus 611 ~~L~~ 615 (961)
=.+.+
T Consensus 235 ~Ki~~ 239 (351)
T 1yi8_B 235 RKVMG 239 (351)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 66654
No 58
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=92.90 E-value=0.063 Score=60.46 Aligned_cols=69 Identities=17% Similarity=0.097 Sum_probs=37.5
Q ss_pred CCcceEeeeccccccHH-HHHHHHHhHhcCCCCceEEEEeceEEcCC-CccccccCCCc-cCchhhhhhcChhHHHHHHH
Q 002136 538 YPTTMLETGHDILFFWV-ARMVMMGIEFTGSVPFSHVYLHGLIRDSQ-GRKMSKTLGNV-IDPIDTIKEFGADALRFTIS 614 (961)
Q Consensus 538 ~P~d~~~~G~Dil~fw~-~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~-G~KMSKS~GNv-I~p~dii~~yGaDalR~~L~ 614 (961)
|.+++.+.|.||..... .+.+ .-.+....| ..+.|.++.+.+ |+|||||.||. |+..| .++.+|=-+.
T Consensus 181 ~~~~~v~~G~DQ~~~~~l~rdl--~~r~~~~~p--~~l~~pll~gl~~G~KMSKS~~ns~I~L~D-----~p~~i~kKI~ 251 (394)
T 2dlc_X 181 LDVDCQFGGVDQRKIFVLAEEN--LPSLGYKKR--AHLMNPMVPGLAQGGKMSASDPNSKIDLLE-----EPKQVKKKIN 251 (394)
T ss_dssp TTCSEEEEEGGGHHHHHHHHHH--GGGGTCCCC--EEEEECCCCCCC----------CCSCBTTC-----CHHHHHHHHH
T ss_pred hCCCEEecCccHHHHHHHHHHH--HHHcCCCCC--EEEecccccCCCCCCcCCCCCCCCEEeccC-----CHHHHHHHHH
Confidence 66888899999965322 2222 222333345 456688888889 99999999996 98776 3566666555
Q ss_pred h
Q 002136 615 L 615 (961)
Q Consensus 615 ~ 615 (961)
+
T Consensus 252 k 252 (394)
T 2dlc_X 252 S 252 (394)
T ss_dssp H
T ss_pred H
Confidence 4
No 59
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=92.87 E-value=0.1 Score=64.65 Aligned_cols=79 Identities=20% Similarity=0.408 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHcCCccccccc--------------cccCCcccCCCCceeeeeccceeeeccHHHHHHHHHHHcCCce
Q 002136 371 FEARKKLWSDLEETGLAVKKEPH--------------TLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELT 436 (961)
Q Consensus 371 ~~ar~~i~~~L~~~g~~~~~~~~--------------~~~~p~~~r~~~~v~~~~~~qwF~~~~~~~~~~~~~~~~~~~~ 436 (961)
.++-+.++..|.++|++-..+.. +...+.|+|||.+|+.+..+||||+++++++++++.++.. .
T Consensus 153 ~~~v~~~f~~L~ekGliY~~~~~v~wcp~~~t~La~~ev~~g~~~~~g~~ve~~~~~~~f~~i~~y~~~Ll~~l~~~--~ 230 (880)
T 4arc_A 153 YRWEQKFFTELYKKGLVYKKTSAVNWCPNDQTVLANEQVIDGCCWRCDTKVERKEIPQWFIKITAYADELLNDLDKL--D 230 (880)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECC------------------------------CEEEEEECGGGGHHHHHHHGGGC--T
T ss_pred HHHHHHHHHHHHHCCCEEEeceeEeecCCcCCEecchhhhcCcCcCCCCccEEEEccceEEeechhHHHHHHHHhhc--c
Confidence 45667888999999988643321 1224679999999999999999999999999999999753 2
Q ss_pred eechhHHHHHHHHHh
Q 002136 437 IMPERFEKIYNHWLS 451 (961)
Q Consensus 437 ~~P~~~~~~~~~wl~ 451 (961)
-+|+..+..-.+|+.
T Consensus 231 ~wp~~v~~~~~~wig 245 (880)
T 4arc_A 231 HWPDTVKTMQRNWIG 245 (880)
T ss_dssp TSCHHHHHHHHHHHC
T ss_pred cccHHHHHHHHhhhc
Confidence 478999999999995
No 60
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=92.82 E-value=0.065 Score=58.43 Aligned_cols=66 Identities=20% Similarity=0.190 Sum_probs=44.9
Q ss_pred CcceEeeeccccccHHHHHHHHHhHhcCCCCceEEEEeceEEcCCC-ccccccCCCccCchhhhhhcChhHHHHHHHhC
Q 002136 539 PTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQG-RKMSKTLGNVIDPIDTIKEFGADALRFTISLG 616 (961)
Q Consensus 539 P~d~~~~G~Dil~fw~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G-~KMSKS~GNvI~p~dii~~yGaDalR~~L~~~ 616 (961)
-+++.+.|.||.... .+.. .+....| .+..+.++...+| +|||||.||.|+..| .+|.+|==+.++
T Consensus 163 ~~~~v~~G~DQ~~~~---~l~R--~i~~~~~--~~~~~~~l~~l~G~~KMSKS~~~~I~L~d-----~~~~i~~KI~~a 229 (314)
T 2zp1_A 163 GVDVAVGGMEQRKIH---MLAR--ELLPKKV--VCIHNPVLTGLDGEGKMSSSKGNFIAVDD-----SPEEIRAKIKKA 229 (314)
T ss_dssp TCSEEEEEGGGHHHH---HHHH--HHSSSCC--EEEEECCCBCTTSSSBCCTTTTCSCBTTC-----CHHHHHHHHHHS
T ss_pred CCCEEEcChhHHHHH---HHHH--HhcCCCc--EEeeccccccCCcccccCCCCcceecCCC-----CHHHHHHHHHhC
Confidence 477888999997632 2222 2222334 4566788888999 899999999998876 455566555543
No 61
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=92.11 E-value=0.097 Score=58.32 Aligned_cols=69 Identities=22% Similarity=0.146 Sum_probs=43.5
Q ss_pred CCcceEeeeccccccH-HHHHHHHHhHhcCC-CCceEEEEeceEEcC-CCc-cccccC-CCccCchhhhhhcChhHHHHH
Q 002136 538 YPTTMLETGHDILFFW-VARMVMMGIEFTGS-VPFSHVYLHGLIRDS-QGR-KMSKTL-GNVIDPIDTIKEFGADALRFT 612 (961)
Q Consensus 538 ~P~d~~~~G~Dil~fw-~~~~i~~~~~l~~~-~Pfk~v~~hg~v~d~-~G~-KMSKS~-GNvI~p~dii~~yGaDalR~~ 612 (961)
|-+|+...|.||.... .+|-++-. +... .| .++.+.++... +|. |||||. ||.|+..| .++.+|=-
T Consensus 199 l~ad~vpgG~DQ~~~l~l~Rdla~r--~~~~~~~--~~l~~p~l~gL~dG~~KMSKS~~~~~I~L~D-----~p~~i~~K 269 (373)
T 3vgj_A 199 LNVDICQLGIDQRKVNMLAREYCDI--KKIKKKP--VILSHGMLPGLLEGQEKMSKSDENSAIFMDD-----SESDVNRK 269 (373)
T ss_dssp TTCSEECCBGGGHHHHHHHHHHHHH--HTCSCCC--EEEEBCCCCCSSTTCCSCCSSSTTCCCBTTC-----CHHHHHHH
T ss_pred cCCcEEEcchhhHHHHHHHHHHHHH--hCCCCCc--eEEeCCeeecCCCCCCCCcCCCCCCeeecCC-----CHHHHHHH
Confidence 4578888999996532 23333322 2222 23 45678888875 885 999999 58998765 44555544
Q ss_pred HHh
Q 002136 613 ISL 615 (961)
Q Consensus 613 L~~ 615 (961)
+.+
T Consensus 270 I~k 272 (373)
T 3vgj_A 270 IKK 272 (373)
T ss_dssp HHH
T ss_pred HHh
Confidence 444
No 62
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=91.89 E-value=0.81 Score=38.96 Aligned_cols=61 Identities=11% Similarity=0.192 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
++++++.|+.+++.++++++.+..+|+|+. |+.+++..-.+|.+|.+--..-+.-+-.+..
T Consensus 6 L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~-----~~~~~~~hI~~Lh~YNeiKD~gq~L~g~iA~ 66 (85)
T 3viq_B 6 LESRVHLLEQQKEQLESSLQDALAKLKNRD-----AKQTVQKHIDLLHTYNEIRDIALGMIGKVAE 66 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSSSC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCC-----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 678899999999999999999999998764 8899999999999988665555544444333
No 63
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=91.84 E-value=0.17 Score=62.93 Aligned_cols=78 Identities=21% Similarity=0.399 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHcCCcccccc--------------ccccCCcccC-CCCceeeeeccceeeeccHHHHHHHHHHHcCCc
Q 002136 371 FEARKKLWSDLEETGLAVKKEP--------------HTLRVPRSQR-GGEVIEPLVSKQWFVTMEPLAEKALHAVEKGEL 435 (961)
Q Consensus 371 ~~ar~~i~~~L~~~g~~~~~~~--------------~~~~~p~~~r-~~~~v~~~~~~qwF~~~~~~~~~~~~~~~~~~~ 435 (961)
.+.-..++..|.++|++-..+. .+...+.|+| ||.+++.+..+|||++++++++++++.++..
T Consensus 133 ~~~v~~~f~~L~~kGliY~~~~~v~w~p~~~t~La~~ev~~g~~~~~~~~~~~~~~~~~~f~~l~~~~~~L~~~l~~~-- 210 (878)
T 2v0c_A 133 YRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGL-- 210 (878)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEETTEESSCTTCBCEEEEEEEEEECGGGGHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHHHCCCEEEcceeEEEeCCCCCCcCHHHHhcCCCcccCCCceEEEecceeeEecchhHHHHHHHhhhc--
Confidence 3555789999999999854211 1223577999 9999999999999999999999999998643
Q ss_pred eeechhHHHHHHHHHh
Q 002136 436 TIMPERFEKIYNHWLS 451 (961)
Q Consensus 436 ~~~P~~~~~~~~~wl~ 451 (961)
. .|++.++...+|+.
T Consensus 211 ~-~p~~~~~~~~~wi~ 225 (878)
T 2v0c_A 211 N-WPEKVKAMQRAWIG 225 (878)
T ss_dssp B-SCHHHHHHHHHHHC
T ss_pred C-CCHHHHHHHHHHhc
Confidence 3 89999999999995
No 64
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=91.82 E-value=0.075 Score=59.57 Aligned_cols=66 Identities=17% Similarity=0.180 Sum_probs=33.2
Q ss_pred cceEeeeccccccH-HHHHHHHHhHhcCCCCceEEEEeceEEcCCC--ccccccCCCccCchhhhhhcChhHHHHHHH
Q 002136 540 TTMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQG--RKMSKTLGNVIDPIDTIKEFGADALRFTIS 614 (961)
Q Consensus 540 ~d~~~~G~Dil~fw-~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G--~KMSKS~GNvI~p~dii~~yGaDalR~~L~ 614 (961)
.++...|.||.... .+|-++- .+....| .++.+.++...+| .|||||.||.|+..| .++.+|=-+.
T Consensus 225 ~~lvp~G~DQ~~~i~l~Rdla~--r~~~~~p--~~l~~~~l~gLdG~~~KMSKS~~~~I~L~D-----~p~~i~kKI~ 293 (395)
T 3i05_A 225 FCLIPQAIDQDPYFRLTRDIAP--RLGYLKP--AVIHSKFFPGLSGPKGKMSSSSGTAVLLTD-----TEKMVKDKIN 293 (395)
T ss_dssp EEEEEEEGGGHHHHHHHHHTHH--HHTCCCC--EEEEECCCCCC-------------CCBTTC-----CHHHHHHHHC
T ss_pred ceEEEeccchHHHHHHHHHHHH--HcCCCCc--eeeccccccCCCCCcccCCCCCCCcccCCC-----CHHHHHHHHH
Confidence 56788899996542 2232222 2333445 4567888888899 799999999998766 4555554443
No 65
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=91.54 E-value=0.11 Score=59.06 Aligned_cols=58 Identities=22% Similarity=0.158 Sum_probs=34.3
Q ss_pred CCcceEeeecccccc-HHHHHHHHHhHhcCCCCceEEEEeceEEcCCC--ccccccCCC-ccCchh
Q 002136 538 YPTTMLETGHDILFF-WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQG--RKMSKTLGN-VIDPID 599 (961)
Q Consensus 538 ~P~d~~~~G~Dil~f-w~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G--~KMSKS~GN-vI~p~d 599 (961)
|-+++...|.||... =+.|-++- .+....| .++.+.++...+| .|||||.|| .|+..|
T Consensus 248 ~~~~lvp~G~DQ~~~i~l~Rdla~--r~~~~~p--~~l~~~ll~gLdG~~~KMSKS~~nsaI~L~d 309 (432)
T 2ip1_A 248 KTPCLIPCAIDQDPYFRVCRDVAD--KLKYSKP--ALLHSRFFPALQGSTTKMSASDDTTAIFMTD 309 (432)
T ss_dssp TCCEEEEEEGGGHHHHHHHHHHHH--HHTSCCC--EEEEECCCCCTTC--------CGGGCCBTTC
T ss_pred CCceEEEeccCcHHHHHHHHHHHH--HhCCCCc--eeeccccccCCCCCccccCCCCCCCeEeccC
Confidence 446777889999654 22222322 2233556 3567889999999 999999999 898776
No 66
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=91.29 E-value=0.17 Score=56.29 Aligned_cols=70 Identities=23% Similarity=0.174 Sum_probs=45.6
Q ss_pred CCcceEeeeccccccH-HHHHHHHHhHhcCCCCceEEEEeceEEcCC-----------------Ccccccc-CCCccCch
Q 002136 538 YPTTMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQ-----------------GRKMSKT-LGNVIDPI 598 (961)
Q Consensus 538 ~P~d~~~~G~Dil~fw-~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~-----------------G~KMSKS-~GNvI~p~ 598 (961)
|-+|+...|.||.... ++|-+ .-.+....| .++.|.++...+ |+||||| .||.|+..
T Consensus 176 ~~~~~v~~G~DQ~~~~~l~rdl--a~r~~~~~p--~~l~~~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~~~~I~L~ 251 (364)
T 2cya_A 176 MDLDIALGGMDQRKAHMLARDV--AEKLGRKKP--VAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKPETAVFVV 251 (364)
T ss_dssp TTCSEEEEEGGGHHHHHHHHHH--HTTTTCCCC--EEEEECCCBCSSCC----------------CBCCSSSGGGSCBTT
T ss_pred cCCCEEeccchHHHHHHHHHHH--HHHcCCCCc--eeeccceeeCCCcccccccccccccccccccccCCCCCCCEeecc
Confidence 5578899999996531 11111 122233345 356778888887 7999999 78999887
Q ss_pred hhhhhcChhHHHHHHHhC
Q 002136 599 DTIKEFGADALRFTISLG 616 (961)
Q Consensus 599 dii~~yGaDalR~~L~~~ 616 (961)
|- ++.++=.+..+
T Consensus 252 d~-----p~~i~~Ki~~a 264 (364)
T 2cya_A 252 DS-----DDDIRRKIRKA 264 (364)
T ss_dssp CC-----HHHHHHHHHTS
T ss_pred CC-----HHHHHHHHHhC
Confidence 73 66676666553
No 67
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=90.83 E-value=0.18 Score=57.28 Aligned_cols=68 Identities=16% Similarity=0.134 Sum_probs=43.0
Q ss_pred CCcceEeeeccccccHHHHHHHHHh--HhcCCCCceEEEEeceEEcCCC--ccccccCCC-ccCchhhhhhcChhHHHHH
Q 002136 538 YPTTMLETGHDILFFWVARMVMMGI--EFTGSVPFSHVYLHGLIRDSQG--RKMSKTLGN-VIDPIDTIKEFGADALRFT 612 (961)
Q Consensus 538 ~P~d~~~~G~Dil~fw~~~~i~~~~--~l~~~~Pfk~v~~hg~v~d~~G--~KMSKS~GN-vI~p~dii~~yGaDalR~~ 612 (961)
|-.++...|.||.... ++..-+ .+....| .++.+.++...+| .|||||.|| .|+..| .++.++==
T Consensus 255 ~~~~lVpvG~DQ~~~i---~l~Rdla~r~~~~~P--~~l~~pll~gLdG~~~KMSKS~~nsaI~L~D-----~p~~I~kK 324 (437)
T 1r6u_A 255 DIQCLIPCAIDQDPYF---RMTRDVAPRIGYPKP--ALLHSTFFPALQGAQTKMSASDPNSSIFLTD-----TAKQIKTK 324 (437)
T ss_dssp CCEEEEEEEGGGHHHH---HHHHHHGGGGTCCCC--EEEEECCCEETTEEEEECCTTSSSSCCBTTC-----CHHHHHHH
T ss_pred CCceEEEeehhhHHHH---HHHHHHHHHhCCCCc--eEeecccccCCCCCccccCCCCCCCeeeccC-----CHHHHHHH
Confidence 3345555799996532 222222 2223456 3467889999999 899999999 898776 34444444
Q ss_pred HHh
Q 002136 613 ISL 615 (961)
Q Consensus 613 L~~ 615 (961)
+..
T Consensus 325 I~~ 327 (437)
T 1r6u_A 325 VNK 327 (437)
T ss_dssp HHH
T ss_pred hhc
Confidence 443
No 68
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=90.65 E-value=0.18 Score=56.37 Aligned_cols=67 Identities=12% Similarity=0.103 Sum_probs=42.2
Q ss_pred cceEeeeccccccH-HHHHHHHHhHhcCCCCceEEEEeceEEcCCC--ccccccCCC-ccCchhhhhhcChhHHHHHHHh
Q 002136 540 TTMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQG--RKMSKTLGN-VIDPIDTIKEFGADALRFTISL 615 (961)
Q Consensus 540 ~d~~~~G~Dil~fw-~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G--~KMSKS~GN-vI~p~dii~~yGaDalR~~L~~ 615 (961)
+++...|.||.... ++|-++ -.+....| ..+.+.++...+| .|||||.+| .|...| .+|.+|==+.+
T Consensus 208 a~~vpvG~DQ~~hl~l~Rdla--~r~n~~~p--~~l~~~~l~gLdG~~~KMSKS~~ns~I~L~D-----~p~~I~kKI~k 278 (392)
T 3jxe_A 208 RCLIPAAIDQDPYWRLQRDFA--ESLGYYKT--AALHSKFVPSLTSLSGKMSASKPETAIYLTD-----SPEDVEKKVWK 278 (392)
T ss_dssp CEEEEEEGGGHHHHHHHHHHT--GGGTSCCC--EEEEECCCCCSSCSSSCCCTTSGGGCCBTTC-----CHHHHHHHHHT
T ss_pred CceeecccchHHHHHHHHHHH--HHcCCCCC--eeeecccccCCCCCccccccCCCCCeeeCCC-----CHHHHHHHHHh
Confidence 56678899997532 222222 12233455 4566888888898 599999999 887655 34445444444
No 69
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=90.54 E-value=0.16 Score=56.97 Aligned_cols=54 Identities=22% Similarity=0.170 Sum_probs=25.2
Q ss_pred eEeeeccccccH-HHHHHHHHhHhcCCCCceEEEEeceEEcCCC--ccccccCCC-ccCchh
Q 002136 542 MLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQG--RKMSKTLGN-VIDPID 599 (961)
Q Consensus 542 ~~~~G~Dil~fw-~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G--~KMSKS~GN-vI~p~d 599 (961)
+...|.||.... .+|-++ -.+....| .++.+.++...+| .|||||.+| .|+..|
T Consensus 223 lvp~G~DQ~~~i~l~Rdla--~r~~~~~p--~~l~~~~l~gLdG~~~KMSKS~~nsaI~L~D 280 (393)
T 3hv0_A 223 LVPHAIDQDPYFRMVRDVA--PRLGYLKP--SSIHSIFLPSLQGSQTKMSASVQNSSIFVND 280 (393)
T ss_dssp EEEEEGGGHHHHHHHHHHT--GGGTCCCC--EEEEECCCCC-------------CCCCBTTC
T ss_pred ecccccchHHHHHHHHHHH--HHcCCCCc--eeeccCcccCCCCCCcCCCCCCCCCeEeccC
Confidence 557899996532 122222 12333345 4567888888899 799999998 887765
No 70
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=90.45 E-value=0.15 Score=55.86 Aligned_cols=72 Identities=24% Similarity=0.236 Sum_probs=44.3
Q ss_pred CCcceEeeecccccc-HHHHHHHHHhHh-cC---CCCceEEEE--eceEEcCCC--ccccccCCC-c--cCchhhhhhcC
Q 002136 538 YPTTMLETGHDILFF-WVARMVMMGIEF-TG---SVPFSHVYL--HGLIRDSQG--RKMSKTLGN-V--IDPIDTIKEFG 605 (961)
Q Consensus 538 ~P~d~~~~G~Dil~f-w~~~~i~~~~~l-~~---~~Pfk~v~~--hg~v~d~~G--~KMSKS~GN-v--I~p~dii~~yG 605 (961)
|-+|+...|.||... =.+|-++..+.. .| ..| .-++. +.++...+| +|||||.|| . |+..| .
T Consensus 136 ~~~~~vpvG~DQ~~~iel~Rdia~r~n~~yg~~f~~P-~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d-----~ 209 (328)
T 1i6k_A 136 YNTDIVPVGEDQKQHIELTRDLAERFNKRYGELFTIP-EARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLD-----D 209 (328)
T ss_dssp TTCSEEECCGGGHHHHHHHHHHHHHHHHHHCSCCCCC-EEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTC-----C
T ss_pred hCCCEEecccchHHHHHHHHHHHHHhCcccccccCCC-eeeeccccccccCCCCCccCCCCCCCCcCceeeecC-----C
Confidence 568899999999753 222223322211 11 245 33332 577888889 999999999 6 87765 4
Q ss_pred hhHHHHHHHh
Q 002136 606 ADALRFTISL 615 (961)
Q Consensus 606 aDalR~~L~~ 615 (961)
+|.++==+.+
T Consensus 210 ~~~i~~KI~~ 219 (328)
T 1i6k_A 210 AKTIEKKIKS 219 (328)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555544
No 71
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=90.33 E-value=0.18 Score=56.65 Aligned_cols=57 Identities=25% Similarity=0.244 Sum_probs=39.3
Q ss_pred CcceEeeeccccccH-HHHHHHHHhHhcCCCCceEEEEeceEEcCCC--ccccccC-CCccCchh
Q 002136 539 PTTMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQG--RKMSKTL-GNVIDPID 599 (961)
Q Consensus 539 P~d~~~~G~Dil~fw-~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G--~KMSKS~-GNvI~p~d 599 (961)
-+++...|.||.... ++|-++-- +....| .++.+.++...+| .|||||. ||.|+..|
T Consensus 243 ~a~lvpvG~DQ~~~i~l~Rdla~r--~~~~~p--~~l~~~~l~gLdG~~~KMSKS~~~~~I~L~D 303 (406)
T 3tze_A 243 AMCLVPAAVDQDPFFRLARDKAKA--LGEKKP--SSIYVSLLPDLKGVNRKMSASDPNSSIYLDD 303 (406)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHHHH--HTCCCC--EEEEECCCCCTTSCCCCSSCSCGGGSCBTTC
T ss_pred CCeEEeeccchHHHHHHHHHHHHH--cCCCCc--eeeccCcccCCCCCCcCCCCCCCCCcccCCC
Confidence 467788899997543 33333332 333445 3557888888999 6999999 78998766
No 72
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=90.10 E-value=0.15 Score=56.20 Aligned_cols=72 Identities=25% Similarity=0.206 Sum_probs=45.0
Q ss_pred CCcceEeeecccccc-HHHHHHHHHhH-hcC---CCCceEEEE--eceEEcCCC--ccccccCCC---ccCchhhhhhcC
Q 002136 538 YPTTMLETGHDILFF-WVARMVMMGIE-FTG---SVPFSHVYL--HGLIRDSQG--RKMSKTLGN---VIDPIDTIKEFG 605 (961)
Q Consensus 538 ~P~d~~~~G~Dil~f-w~~~~i~~~~~-l~~---~~Pfk~v~~--hg~v~d~~G--~KMSKS~GN---vI~p~dii~~yG 605 (961)
|-+|+...|.||... =++|-++-.+. ..| ..| .-++. +.++...+| +|||||.|| .|+..| .
T Consensus 146 ~~a~~vpvG~DQ~~~lel~Rdia~r~n~~yg~~f~~P-~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D-----~ 219 (348)
T 2yy5_A 146 YQPDIVPVGNDQKQHLELTRDLAQRIQKKFKLKLRLP-QFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDD-----P 219 (348)
T ss_dssp TCCSEEECCGGGHHHHHHHHHHHHHHHHHHCCCCCCC-EEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTC-----C
T ss_pred hCccEEEecccHHHHHHHHHHHHHHhhhhcccccCCC-eeecccccccccCCCCcchhcCCCCCCCCceEeecC-----C
Confidence 568889999999753 22333332221 113 245 33333 578888888 999999999 898776 4
Q ss_pred hhHHHHHHHh
Q 002136 606 ADALRFTISL 615 (961)
Q Consensus 606 aDalR~~L~~ 615 (961)
+|.+|==+.+
T Consensus 220 ~~~i~~KI~~ 229 (348)
T 2yy5_A 220 KEVVVKKIRQ 229 (348)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 5555555544
No 73
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=89.98 E-value=0.22 Score=55.06 Aligned_cols=68 Identities=19% Similarity=0.045 Sum_probs=42.3
Q ss_pred CcceEeeeccccccH-HHHHHHHHhHhcCCCCceEEEEeceEEcC-CC-ccccccC-CCccCchhhhhhcChhHHHHHHH
Q 002136 539 PTTMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDS-QG-RKMSKTL-GNVIDPIDTIKEFGADALRFTIS 614 (961)
Q Consensus 539 P~d~~~~G~Dil~fw-~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~-~G-~KMSKS~-GNvI~p~dii~~yGaDalR~~L~ 614 (961)
-+|+...|.||.... ++|-++ -.+....| .+..+.++... +| .|||||. ||.|+..| .+|.+|==+.
T Consensus 186 ~~~~~~~G~DQ~~~i~l~Rdia--~r~~~~~p--~~~~~~~l~gL~dg~~KMSKS~~~~~I~L~d-----~p~~i~kKI~ 256 (348)
T 2j5b_A 186 GIDICQLGIDQRKVNMLAIEYA--NDRGLKIP--ISLSHHMLMSLSGPKKKMSKSDPQGAIFMDD-----TEQEVSEKIS 256 (348)
T ss_dssp CCSEECCBGGGHHHHHHHHHHH--HHTTCCCC--EEEEBCCCCCTTCSSCCCSTTCGGGSCBTTC-----CHHHHHHHHH
T ss_pred CCcEEEeccChHHHHHHHHHHH--HHhCCCCc--eeecCccccCCCCcccccccCCCCCeEeecC-----CHHHHHHHHh
Confidence 478888999996432 222222 22333345 45667788877 56 7999999 68898766 4455554444
Q ss_pred h
Q 002136 615 L 615 (961)
Q Consensus 615 ~ 615 (961)
+
T Consensus 257 k 257 (348)
T 2j5b_A 257 R 257 (348)
T ss_dssp H
T ss_pred c
Confidence 4
No 74
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=89.80 E-value=0.24 Score=56.98 Aligned_cols=57 Identities=18% Similarity=0.077 Sum_probs=38.0
Q ss_pred CCcceEeeeccccccHHHHHHHHH--hHhcCCCCceEEEEeceEEcCCC--ccccccCCC-ccCchh
Q 002136 538 YPTTMLETGHDILFFWVARMVMMG--IEFTGSVPFSHVYLHGLIRDSQG--RKMSKTLGN-VIDPID 599 (961)
Q Consensus 538 ~P~d~~~~G~Dil~fw~~~~i~~~--~~l~~~~Pfk~v~~hg~v~d~~G--~KMSKS~GN-vI~p~d 599 (961)
|-.++...|.||.... .+..- -.+....|. ++.+.++...+| .|||||.|| .|+..|
T Consensus 302 ~~~~~VpvG~DQ~~~i---~l~Rdla~r~~~~~p~--~l~~pll~gLdG~~~KMSKS~~nsaI~L~d 363 (477)
T 1r6t_A 302 DIQCLIPCAIDQDPYF---RMTRDVAPRIGYPKPA--LLHSTFFPALQGAQTKMSASDPNSSIFLTD 363 (477)
T ss_dssp CCEEEEEEEGGGHHHH---HHHHHHGGGGTCCCCE--EEEECCCEETTEEEEECCTTSTTCCCBTTC
T ss_pred CCceeEeccccHHHHH---HHHHHHHHHhCCCCce--eeecccccCCCCCccccCCCCCCCceeecC
Confidence 3345556799996532 22222 222234563 567889999999 899999999 898766
No 75
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=89.39 E-value=0.098 Score=57.13 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=25.2
Q ss_pred cCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCC
Q 002136 101 VTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAG 140 (961)
Q Consensus 101 ~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~G 140 (961)
|||.|||||.++.+.. +.++++ |+++++..| |-|+
T Consensus 12 PTg~lHlG~~lg~l~~--~~~lQ~--g~~~~~~ia-D~ha 46 (322)
T 3tzl_A 12 PSGDLHIGNYFGAIKQ--MVDAQE--KSQMFMFIA-NYHA 46 (322)
T ss_dssp CSSCCBHHHHHHTHHH--HHHTTT--TSCCEEEEC-HHHH
T ss_pred CCccccHHHHHHHHHH--HHHHhc--CCCEEEEEe-cCee
Confidence 3999999999875543 556665 999887766 4444
No 76
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=89.18 E-value=0.29 Score=54.58 Aligned_cols=67 Identities=16% Similarity=0.130 Sum_probs=44.3
Q ss_pred cceEeeeccccccH-HHHHHHHHhHhcCCCCceEEEEeceEEcCCCc-ccccc-CCCccCchhhhhhcChhHHHHHHHh
Q 002136 540 TTMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQGR-KMSKT-LGNVIDPIDTIKEFGADALRFTISL 615 (961)
Q Consensus 540 ~d~~~~G~Dil~fw-~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G~-KMSKS-~GNvI~p~dii~~yGaDalR~~L~~ 615 (961)
.++...|.||.... ++|-++-- +....| .++.+.++...+|. ||||| .||.|...| .+|.++=-+.+
T Consensus 225 a~~VpvG~DQ~~hl~l~Rdla~r--~n~~~p--~~l~~~~l~gLdG~~KMSKSd~~~~I~L~D-----~p~~i~kKI~k 294 (386)
T 3hzr_A 225 RCLVLDSIKNVQFHSIIDQIATT--LNFIQP--TVLFHKMVPLLSGVTKFDIPSDHNSILLSD-----NAKQVERKINK 294 (386)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHH--HTCCCC--EEEEECCCCCTTCTTCCCCCCTTTSCBTTC-----CHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHH--cCCCCc--eEeecCeeeCCCCCCccCcCCCCCeeecCC-----CHHHHHHHHHH
Confidence 34444599997543 33444332 333556 45678888888995 99999 899998766 55556555544
No 77
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=87.56 E-value=0.36 Score=57.96 Aligned_cols=58 Identities=24% Similarity=0.163 Sum_probs=37.2
Q ss_pred CCcceEeeeccccccH-HHHHHHHHhHhcCC-CCceEEEEeceEEcC-CC-ccccccCC-CccCchh
Q 002136 538 YPTTMLETGHDILFFW-VARMVMMGIEFTGS-VPFSHVYLHGLIRDS-QG-RKMSKTLG-NVIDPID 599 (961)
Q Consensus 538 ~P~d~~~~G~Dil~fw-~~~~i~~~~~l~~~-~Pfk~v~~hg~v~d~-~G-~KMSKS~G-NvI~p~d 599 (961)
|-+|+...|.||.... .+|-++. .+... .| .++.+.++... +| +|||||.+ |.|+..|
T Consensus 182 ~~ad~vpvG~DQ~~~l~l~Rdla~--r~n~~~~p--~~l~~~~l~gL~dG~~KMSKS~~~~~I~L~D 244 (690)
T 3p0j_A 182 LKADICQLGLDQRKVNMLAREYCD--LIGRKLKP--VILSHHMLAGLKQGQAKMSKSDPDSAIFMED 244 (690)
T ss_dssp TTCSEECCBGGGHHHHHHHHHHHH--HTTCCCCC--EEEEBCCCCCSSTTCSSCBTTBGGGSCBTTC
T ss_pred hCCCEEeccccHHHHHHHHHHHHH--HhCCCCCc--eEeecCeeecCCCCCcCCCCCCCCCeeeccC
Confidence 4578888999996532 2222222 12222 13 45678888887 88 59999998 6887654
No 78
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=86.66 E-value=0.57 Score=52.18 Aligned_cols=68 Identities=19% Similarity=0.175 Sum_probs=45.0
Q ss_pred CCcceEeeeccccccHHHHHHHHHhH--hcC--------C-CCceEEEEeceEEcCCC------------------cccc
Q 002136 538 YPTTMLETGHDILFFWVARMVMMGIE--FTG--------S-VPFSHVYLHGLIRDSQG------------------RKMS 588 (961)
Q Consensus 538 ~P~d~~~~G~Dil~fw~~~~i~~~~~--l~~--------~-~Pfk~v~~hg~v~d~~G------------------~KMS 588 (961)
|-+|+...|.||... .++..-++ +.. . .| .+..+.++...+| +|||
T Consensus 179 ~~~~~vp~G~DQ~~~---i~l~rdla~r~n~~~~~~~g~~~~~--~~~~~~~l~gL~g~~~~~~~~~~~~~~~~~~~KMS 253 (375)
T 2cyc_A 179 QGVTIAHAGMDQRKA---HVIAIEVAQKLRYHPIVHEGEKLKP--VAVHHHLLLGLQEPPKWPIESEEEFKEIKAQMKMS 253 (375)
T ss_dssp TTCSEEEEEGGGHHH---HHHHHHHGGGCSSSCEEETTEEECC--EEEEECCCBCSSCCSSSSCCSHHHHHHHHHHHBGG
T ss_pred hCCCeecccchHHHH---HHHHHHHHHHhCCcccccccccCcc--EEeccccccCCCCcccccccchhhhhhhhhhhccc
Confidence 457889999999643 22222222 211 1 23 3456788888888 8999
Q ss_pred ccC-CCccCchhhhhhcChhHHHHHHHh
Q 002136 589 KTL-GNVIDPIDTIKEFGADALRFTISL 615 (961)
Q Consensus 589 KS~-GNvI~p~dii~~yGaDalR~~L~~ 615 (961)
||. +|.|+..|- ++.+|=.+.+
T Consensus 254 KS~~~~~I~L~d~-----p~~i~~KI~~ 276 (375)
T 2cyc_A 254 KSKPYSAVFIHDS-----PEEIRQKLRK 276 (375)
T ss_dssp GSCGGGSCBTTCC-----HHHHHHHHHH
T ss_pred CCCCCCeeccCCC-----HHHHHHHHHH
Confidence 999 788988763 6667666655
No 79
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=86.00 E-value=0.5 Score=50.92 Aligned_cols=51 Identities=24% Similarity=0.177 Sum_probs=19.7
Q ss_pred ceEeeeccccccHHHHHHHHHhHhcCCCCceEEEEeceEEcCCCccccccCCCc
Q 002136 541 TMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNV 594 (961)
Q Consensus 541 d~~~~G~Dil~fw~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNv 594 (961)
+..+-|.|.+-. ..+.+.+--++ |..+ -.+.-++++++.+|+|||||.||+
T Consensus 186 ThvIrG~D~l~~-t~~q~~l~~al-G~~~-p~~~H~pll~~~~g~KLSKR~g~~ 236 (298)
T 1nzj_A 186 TEIVRGADLIEP-TVRQISLYQLF-GWKV-PDYIHLPLALNPQGAKLSKQNHAP 236 (298)
T ss_dssp CEEEEEGGGHHH-HHHHHHHHHHH-TCCC-CEEEEECBCCC-------------
T ss_pred CEEEeCcccccc-HHHHHHHHHHc-CCCC-CeEEEeeeeECCCCCcccccCCcc
Confidence 333449997633 33333322223 3322 366777888899999999999998
No 80
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=85.41 E-value=0.54 Score=51.35 Aligned_cols=42 Identities=14% Similarity=0.234 Sum_probs=25.7
Q ss_pred CCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCC
Q 002136 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGT 136 (961)
Q Consensus 90 ~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~ 136 (961)
+++.+.++. -|||.|||||+ ..+. .+.++++ .|+++++..|=
T Consensus 31 ~~~~vy~G~-~PTg~lHlG~l-~~l~--~~~~lq~-~g~~~~~~i~D 72 (323)
T 2cyb_A 31 EKPRAYVGY-EPSGEIHLGHM-MTVQ--KLMDLQE-AGFEIIVLLAD 72 (323)
T ss_dssp SCCEEEEEE-CCCSCCBHHHH-HHHH--HHHHHHH-TTCEEEEEECH
T ss_pred CCCEEEECc-CCCCcchHHHH-HHHH--HHHHHHH-CCCcEEEEECC
Confidence 345555552 57999999995 3222 3445544 48887776543
No 81
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=83.70 E-value=0.26 Score=54.08 Aligned_cols=73 Identities=19% Similarity=0.215 Sum_probs=44.3
Q ss_pred CCcceEeeecccccc-HHHHHHHHHhHh-cCC------CCceEEEE--eceEEcC-CC-ccccccC---CCccCchhhhh
Q 002136 538 YPTTMLETGHDILFF-WVARMVMMGIEF-TGS------VPFSHVYL--HGLIRDS-QG-RKMSKTL---GNVIDPIDTIK 602 (961)
Q Consensus 538 ~P~d~~~~G~Dil~f-w~~~~i~~~~~l-~~~------~Pfk~v~~--hg~v~d~-~G-~KMSKS~---GNvI~p~dii~ 602 (961)
|-+|+...|.||... =++|-++-.+.. .|. .| .-++. +.++... +| +|||||. ||.|...|
T Consensus 142 ~~ad~vpvG~DQ~~hlel~Rdia~rfn~~yg~~~~~f~~p-~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D--- 217 (341)
T 3sz3_A 142 YGAHQVPVGSDQKQHLELARDIATRFNNIYSPEQPIFTIP-EPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLE--- 217 (341)
T ss_dssp TTCSEECCCGGGHHHHHHHHHHHHHHHHHHCSSSCSSCCC-EECCCSCCCCCEETTEEEEECCTTCSCGGGCCBTTC---
T ss_pred cCCCEEEeccchHHHHHHHHHHHHHhchhccCCCcccccC-hhhhccCcccccCCCCCCCccCCCCCCCCCeeecCC---
Confidence 447788889999864 355555544331 131 23 22322 3456655 57 7999999 89998765
Q ss_pred hcChhHHHHHHHhC
Q 002136 603 EFGADALRFTISLG 616 (961)
Q Consensus 603 ~yGaDalR~~L~~~ 616 (961)
.+|.+|==+.++
T Consensus 218 --~p~~i~kKI~~a 229 (341)
T 3sz3_A 218 --DPKSIIKKINKA 229 (341)
T ss_dssp --CHHHHHHHHHTC
T ss_pred --CHHHHHHHhhhc
Confidence 455666555543
No 82
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=82.91 E-value=1.1 Score=50.06 Aligned_cols=60 Identities=15% Similarity=0.155 Sum_probs=37.7
Q ss_pred HHHhCCCCCCCCC--------CCCCCEEEeCCCCCcC-CCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCC
Q 002136 74 WWESQGYFKPNFE--------RGSDPFVISMPPPNVT-GSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTD 137 (961)
Q Consensus 74 ~W~~~~~f~~~~~--------~~~~~f~i~~ppPy~n-G~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D 137 (961)
.+.++|+|....+ ..++++.+.++ --|| |.|||||..... .+.++++.-|..|.+..|-+
T Consensus 49 ~l~~RG~i~~~~d~~~l~~~l~~g~~~~vy~G-~~PTa~~lHlGh~v~~~---~~~~lQ~~~~~~v~i~I~D~ 117 (393)
T 3hv0_A 49 HFFRRNIFLSHRDFEKILDVYEKGELFYLYTG-RGPSSESLHVGHLVPFL---FTKYLQDTFKVPLVIQLTDD 117 (393)
T ss_dssp HHHHTTSEEEEESHHHHHHHHHTTCCCEEEEE-ECCSSSSCBSTTHHHHH---HHHHHHHHHCCCEEEEECHH
T ss_pred HHHhCCCccccCCHHHHHHHHhcCCCeEEEeC-CCCCCCCccHHHHHHHH---HHHHHHHhcCCCeEeeccCh
Confidence 3556777643222 12456777776 5668 689999976544 34557777688877755443
No 83
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=82.64 E-value=0.67 Score=50.87 Aligned_cols=71 Identities=21% Similarity=0.303 Sum_probs=42.1
Q ss_pred CCcceEeeecccccc-HHHHHHHHHhHh-cC---CCCceEEEEe---ceEEcC-CC-ccccccCC---CccCchhhhhhc
Q 002136 538 YPTTMLETGHDILFF-WVARMVMMGIEF-TG---SVPFSHVYLH---GLIRDS-QG-RKMSKTLG---NVIDPIDTIKEF 604 (961)
Q Consensus 538 ~P~d~~~~G~Dil~f-w~~~~i~~~~~l-~~---~~Pfk~v~~h---g~v~d~-~G-~KMSKS~G---NvI~p~dii~~y 604 (961)
|-+|+...|.||... =++|-++-.+.. .| ..| ..+++ .++... +| +|||||.+ |.|...|
T Consensus 151 ~~ad~vpvG~DQ~~hleltRdia~rfn~~yg~~f~~p--~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D----- 223 (346)
T 3n9i_A 151 YQTNQVPVGEDQKQHLELSRDIASRFNNLYGDIFKIP--EPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLE----- 223 (346)
T ss_dssp TTCSEECCCGGGHHHHHHHHHHHHHHHHHHSSCSCCC--EECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTTS-----
T ss_pred hCceEEEeccchHHHHHHHHHHHHHhccccCCccccc--chhccCCcccCccCCCCccccCCCCCCCCceecCCC-----
Confidence 457888899999853 345555543331 12 123 33333 345555 67 59999997 6887765
Q ss_pred ChhHHHHHHHh
Q 002136 605 GADALRFTISL 615 (961)
Q Consensus 605 GaDalR~~L~~ 615 (961)
.+|.+|==+.+
T Consensus 224 ~p~~i~kKI~k 234 (346)
T 3n9i_A 224 DPKSVVKKIKR 234 (346)
T ss_dssp CHHHHHHHHHT
T ss_pred CHHHHHHHHHh
Confidence 45555555544
No 84
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=82.39 E-value=0.69 Score=52.46 Aligned_cols=58 Identities=16% Similarity=0.141 Sum_probs=38.4
Q ss_pred HHHhCCCCCCCCC--------CCCCCEEEeCCCCCcC-CCCCCchhhHhHHHHHHHHHHHHcCCCeeecCC
Q 002136 74 WWESQGYFKPNFE--------RGSDPFVISMPPPNVT-GSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (961)
Q Consensus 74 ~W~~~~~f~~~~~--------~~~~~f~i~~ppPy~n-G~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G 135 (961)
.+.++|+|....+ ..+++|.+.++ --|| |.|||||..... .+.+++..-|..|.+..|
T Consensus 66 ~~l~RG~i~~~~dl~~ll~~l~~g~p~~vytG-~dPTagsLHLGH~v~~~---~l~~lQ~~~g~~v~I~Ig 132 (451)
T 3foc_A 66 PMLRRGLFYAHRDFEEFLSYYEKGHPIYIYTG-RGPSSGALHLGHLLPFI---FTKYLQDAFKCYVVIQIT 132 (451)
T ss_dssp HHHHTTSEEEEESHHHHHHHHHTTCCEEEEEE-ECCCSSCCBHHHHHHHH---HHHHHHHHHTCEEEEEEC
T ss_pred HHHhCCCccccccHHHHHHHHhcCCCeEEEec-CCCCCCCccHHHHHHHH---HHHHHHHccCceEEEEee
Confidence 5667787743221 12467888888 6778 899999977643 234466666877777544
No 85
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=82.16 E-value=0.5 Score=52.46 Aligned_cols=40 Identities=13% Similarity=0.047 Sum_probs=25.3
Q ss_pred CEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCC
Q 002136 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (961)
Q Consensus 91 ~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G 135 (961)
++.+.++ --|||.||||| +..+. .+.++++ .|+++++..|
T Consensus 35 ~~~iy~G-~~PTg~lHlG~-l~~l~--~~~~lQ~-~G~~~~~~ia 74 (364)
T 2cya_A 35 RIKGYIG-YEPSGVAHIGW-LVWMY--KVKDLVE-AGVDFSVLEA 74 (364)
T ss_dssp CCEEEEE-ECCCSSCBTHH-HHHHH--HHHHHHH-TTCEEEEEEC
T ss_pred CCEEEec-cCCCCCccHhH-HHHHH--HHHHHHH-CCCCEEEEEe
Confidence 3444444 34489999999 55432 2444444 4999888766
No 86
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=81.86 E-value=1.2 Score=49.61 Aligned_cols=58 Identities=9% Similarity=0.049 Sum_probs=38.6
Q ss_pred HHHhCCCCCCCCC--------CCCCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCC
Q 002136 74 WWESQGYFKPNFE--------RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (961)
Q Consensus 74 ~W~~~~~f~~~~~--------~~~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G 135 (961)
.+.++|+|....+ ..++++.+.+| --|||.|||||..+. .+..++++.-|..|.++.|
T Consensus 57 ~~l~RG~i~~~~d~~~ll~~~~~~~~~~vysG-~~PTG~lHLGh~v~~---~~~~~lQ~~~g~~v~i~I~ 122 (386)
T 3hzr_A 57 HYLSRGVFLAEKSLDKFLDDVEAKKPTFIFIQ-KYPQKEVALEEYITL---EFARYLQDAFNIQVIIQIL 122 (386)
T ss_dssp HHHHTTSEEEESSHHHHHHHHHTTCCEEEEEE-ECCCSSCBGGGHHHH---HHHHHHHHHHCCEEEEEEC
T ss_pred HHHHCcCccccccHHHHHHHHhcCCCeEEEec-cCCCCCccHHHHHHH---HHHHHHHHhcCCeEEEEeC
Confidence 4667788743322 13567888877 677999999997765 2234466656888777743
No 87
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=81.63 E-value=1.4 Score=49.37 Aligned_cols=42 Identities=17% Similarity=0.154 Sum_probs=27.2
Q ss_pred CCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCC
Q 002136 89 SDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (961)
Q Consensus 89 ~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G 135 (961)
++++.+.++ --|||.|||||+++.+. ..++++ .|+++++..|
T Consensus 37 ~~p~~vy~G-~~PTG~LHlG~~~~al~---~~~~~q-~g~~~ii~I~ 78 (394)
T 2dlc_X 37 KRHLKLYWG-TAPTGRPHCGYFVPMTK---LADFLK-AGCEVTVLLA 78 (394)
T ss_dssp CSCCEEEEE-ECCCSCCBGGGHHHHHH---HHHHHH-TTCEEEEEEC
T ss_pred CCCeEEEEE-eCCCCCccHHHHHHHHH---HHHHHH-cCCcEEEEEc
Confidence 345444444 23499999999877553 444555 6888877655
No 88
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=81.57 E-value=0.48 Score=51.82 Aligned_cols=31 Identities=10% Similarity=0.119 Sum_probs=21.6
Q ss_pred cCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCC
Q 002136 101 VTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (961)
Q Consensus 101 ~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G 135 (961)
|||.|||||.++.+.. +.++++ |+++++..|
T Consensus 10 PTG~lHlGn~vg~l~~--~~~lQ~--g~~~~~~Ia 40 (328)
T 1i6k_A 10 PSGVITIGNYIGALRQ--FVELQH--EYNCYFCIV 40 (328)
T ss_dssp CCSCCBHHHHHHTHHH--HHHHTT--TSEEEEEEC
T ss_pred CCCcccHHHHHHHHHH--HHHHHc--CCcEEEEEe
Confidence 3899999999876622 223333 999877665
No 89
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=80.68 E-value=7.1 Score=34.39 Aligned_cols=65 Identities=14% Similarity=0.112 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-------HHhHh----cCchh--hccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 890 ISAEVQRLSKRLSKMQSEYDG-------LVARL----SSSKF--VEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~-------~~~kl----~n~~f--~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
++.-+.+|++++..++++|++ +.+.. +||.| ...+ +.-+.+...++..++.++.+++..|+++..
T Consensus 13 peqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~-~~~L~e~~~kid~L~~el~K~q~~L~e~e~ 90 (98)
T 2ke4_A 13 PEQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASL-EPQIAETLSNIERLKLEVQKYEAWLAEAES 90 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444455566666666655554 44433 46888 4444 556666677788888888888887777754
No 90
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=78.86 E-value=1.5 Score=48.94 Aligned_cols=43 Identities=14% Similarity=0.136 Sum_probs=29.8
Q ss_pred CCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCC
Q 002136 89 SDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (961)
Q Consensus 89 ~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G 135 (961)
++++.+.++ --|||.|||||..+... ..+++...|++|.+..|
T Consensus 71 ~~p~~i~sG-~~PTG~lHLGh~v~~~~---~~~lQ~~~g~~~~i~Ia 113 (392)
T 3jxe_A 71 GRGFFLYTG-RGPSGPMHIGHIIPFFA---TKWLQEKFGVNLYIQIT 113 (392)
T ss_dssp TCCCEEEEE-ECCSSCCBHHHHHHHHH---HHHHHHHHCCEEEEEEC
T ss_pred CCCeEEEec-cCCCCchhHHHHHHHHH---HHHHHHhcCCceEEEec
Confidence 466777776 44689999999987642 12244446998888776
No 91
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=78.00 E-value=1.2 Score=48.94 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=22.1
Q ss_pred cCCCCCCchhhHhHHHHHHHHHHHHcC-CCeeecCCC
Q 002136 101 VTGSLHMGHAMFVTLEDIMVRYHRMKG-RPTLWLPGT 136 (961)
Q Consensus 101 ~nG~LHiGHa~~~~~~Di~~R~~rm~G-~~Vl~~~G~ 136 (961)
|||.|||||.++.+ --+.++++. | +++.+..|=
T Consensus 10 PTg~lHlGh~~g~l--~~~~~lQ~~-G~~~~~~~IaD 43 (337)
T 2el7_A 10 PSGEIHIGNYLGAI--KQWVAIGEK-LGRDAFFCIVD 43 (337)
T ss_dssp SCSCCBHHHHHTHH--HHHHHHHHH-HGGGEEEEECG
T ss_pred CCCcccHHHHHHHH--HHHHHHHhc-CCCCEEEEEeC
Confidence 38999999998764 223455543 6 888776553
No 92
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=77.99 E-value=4 Score=35.96 Aligned_cols=67 Identities=16% Similarity=0.260 Sum_probs=47.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcC----chhh---------ccCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 889 DISAEVQRLSKRLSKMQSEYDGLVARLSS----SKFV---------EKAPEDVV-RGVQEKAAEAEEKINLTKNRLAFLR 954 (961)
Q Consensus 889 d~~~e~~rl~k~~~kl~~~~~~~~~kl~n----~~f~---------~kap~~vv-~~~~~kl~~~~~~l~~~~~~l~~l~ 954 (961)
++.++++.|+.+..+|.++++.++.+|.+ -.|- ..-|.... +..++.++.++++++++...+..|.
T Consensus 16 ~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~~lE 95 (100)
T 1go4_E 16 TLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRAME 95 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777888888888888888888888876 4441 23344433 4566778888888888888776654
Q ss_pred h
Q 002136 955 S 955 (961)
Q Consensus 955 ~ 955 (961)
.
T Consensus 96 e 96 (100)
T 1go4_E 96 R 96 (100)
T ss_dssp -
T ss_pred c
Confidence 3
No 93
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=77.98 E-value=1 Score=48.93 Aligned_cols=43 Identities=19% Similarity=0.240 Sum_probs=26.5
Q ss_pred CCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCC
Q 002136 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTD 137 (961)
Q Consensus 90 ~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D 137 (961)
+++.+.++ --|||.||||| +..+. .+.++++ .|+++++..|=+
T Consensus 27 ~~~~vy~G-~~PTg~lHlGh-l~~l~--~~~~lQ~-~g~~~~~~i~D~ 69 (314)
T 2zp1_A 27 DEKSAYIG-FEPSGKIHLGH-YLQIK--KMIDLQN-AGFDIIILLADL 69 (314)
T ss_dssp SSEEEEEE-ECCCSSCBHHH-HHHHH--HHHHHHH-TTEEEEEEECHH
T ss_pred CCCEEEEc-cCCCCCcchhh-HHHHH--HHHHHHH-CCCCEEEEEecc
Confidence 34444444 33489999999 55442 2444444 489988876643
No 94
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=77.41 E-value=1.5 Score=52.79 Aligned_cols=46 Identities=9% Similarity=0.083 Sum_probs=29.9
Q ss_pred CCEEEeCCCCCcCCCCCCchhhHhHHHH-HHHHHHHHcCCCeeecCCCCCCCc
Q 002136 90 DPFVISMPPPNVTGSLHMGHAMFVTLED-IMVRYHRMKGRPTLWLPGTDHAGI 141 (961)
Q Consensus 90 ~~f~i~~ppPy~nG~LHiGHa~~~~~~D-i~~R~~rm~G~~Vl~~~G~D~~Gl 141 (961)
+++.+.++ --|||.||||| .++.- .+.++++ .|++|.+..| |-||+
T Consensus 39 ~~~~vy~G-~~PTg~lHLG~---~v~~~~~~~~lQ~-~G~~~~~lIa-D~ha~ 85 (690)
T 3p0j_A 39 PLIRCYDG-FEPSGRMHIAQ---GIFKAVNVNKCTA-AGCEFVFWVA-DWFAL 85 (690)
T ss_dssp TTEEEEEE-ECCCSCCBHHH---HHHHHHHHHHHHH-TTEEEEEEEC-CGGGG
T ss_pred CCceEEee-ecCCCcchhHh---hHHHHHHHHHHHH-CCCcEEEEEe-eeEEE
Confidence 34566655 45699999999 22222 2455655 4999888776 55665
No 95
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=77.34 E-value=0.94 Score=50.35 Aligned_cols=44 Identities=14% Similarity=0.218 Sum_probs=26.6
Q ss_pred CEEEeCCCCCcCCCCCCchhhHhHHHH-HHHHHHHHcCCCeeecCCCCCCC
Q 002136 91 PFVISMPPPNVTGSLHMGHAMFVTLED-IMVRYHRMKGRPTLWLPGTDHAG 140 (961)
Q Consensus 91 ~f~i~~ppPy~nG~LHiGHa~~~~~~D-i~~R~~rm~G~~Vl~~~G~D~~G 140 (961)
+..+..+ --|||.||||| .++.= .+.++++ .|++|.+..| |-||
T Consensus 56 ~~~iy~G-~~PTg~lHlG~---gvl~~~~~~~lQ~-~G~~~~~lIa-D~ha 100 (373)
T 3vgj_A 56 KLICYDG-FEPSGRMHIAQ---GLLKSIIVNKLTS-NGCTFIFWIA-DWFA 100 (373)
T ss_dssp SCEEEEE-ECCCSSCBHHH---HHHHHHHHHHHHT-TTCEEEEEEC-HHHH
T ss_pred CceEEeC-CCCCCCceehh---hHHHHHHHHHHHH-CCCcEEEEEe-ccee
Confidence 3344444 34589999999 23222 2555554 4999888766 4444
No 96
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=77.27 E-value=1.4 Score=49.16 Aligned_cols=74 Identities=20% Similarity=0.195 Sum_probs=42.3
Q ss_pred CCcceEeeecccccc-HHHHHHHHHhHhc-CC-CCceEEEEe---ceEEcC-CC-ccccccC---CCccCchhhhhhcCh
Q 002136 538 YPTTMLETGHDILFF-WVARMVMMGIEFT-GS-VPFSHVYLH---GLIRDS-QG-RKMSKTL---GNVIDPIDTIKEFGA 606 (961)
Q Consensus 538 ~P~d~~~~G~Dil~f-w~~~~i~~~~~l~-~~-~Pfk~v~~h---g~v~d~-~G-~KMSKS~---GNvI~p~dii~~yGa 606 (961)
|-+|+...|.||... =++|-++.-+... |+ .+.-.-+++ ..+... +| +|||||. ||.|...| .+
T Consensus 170 ~~ad~vPvG~DQ~~hleltRdia~rfn~~y~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~D-----~p 244 (388)
T 3prh_A 170 YGTDLVPPGEDQKQHLELTRNLAERFNKKYNDIFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLD-----EP 244 (388)
T ss_dssp TTCCEECCCSSCHHHHHHHHHHHHHHHHHTCSCCCCCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBTTC-----CH
T ss_pred hCCCEEEechhHHHHHHHHHHHHHHhCcccCCCcccchhhhcccccccccCCCCCCccCCCCCCCCCeeecCC-----CH
Confidence 457888899999753 3455555433321 21 111122332 234444 33 7999999 89998765 45
Q ss_pred hHHHHHHHhC
Q 002136 607 DALRFTISLG 616 (961)
Q Consensus 607 DalR~~L~~~ 616 (961)
|.+|==+.++
T Consensus 245 ~~I~kKI~ka 254 (388)
T 3prh_A 245 KQLEKKIKSA 254 (388)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHhhc
Confidence 5566555543
No 97
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=76.99 E-value=1.7 Score=48.53 Aligned_cols=61 Identities=18% Similarity=0.248 Sum_probs=40.1
Q ss_pred HHHhCCCCCCCCC--------CCCCCEEEeCCCCCcCC-CCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCC
Q 002136 74 WWESQGYFKPNFE--------RGSDPFVISMPPPNVTG-SLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDH 138 (961)
Q Consensus 74 ~W~~~~~f~~~~~--------~~~~~f~i~~ppPy~nG-~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~ 138 (961)
.+.++|+|-...+ ..++++.+.++ --||| .|||||.... ..+.++++.-|..|.++.|-++
T Consensus 53 ~~~~RG~~~~~~d~~~~l~~~~~~~~~~vy~G-~~PTg~~lHLGh~v~~---~~~~~lQ~~~~~~v~i~I~D~~ 122 (395)
T 3i05_A 53 HFLRRGIFFSHRDLNLLLDVYESGQPFYLYTG-RGPSSESMHMGHLIPF---MFTKWLQDSFRVPLVIQMTDDE 122 (395)
T ss_dssp HHHHTTSEEEEESHHHHHHHHHTTCCEEEEEE-ECCCSSCCBGGGSHHH---HHHHHHHHHHTCCEEEEECHHH
T ss_pred HHHhcCCccccccHHHHHHHHhcCCCeEEEEe-ecCCCccchHHHHHHH---HHHHHHHHhcCCcEEEEEcchH
Confidence 4667787743221 13567888777 67799 7999998664 3345566666888887755443
No 98
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=75.96 E-value=2.3 Score=48.14 Aligned_cols=54 Identities=22% Similarity=0.226 Sum_probs=33.7
Q ss_pred eEeeeccccccH-HHHHHHHHhHhcCCCCceEEEEeceEEcCCCc--cccccCCC-ccCchh
Q 002136 542 MLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQGR--KMSKTLGN-VIDPID 599 (961)
Q Consensus 542 ~~~~G~Dil~fw-~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G~--KMSKS~GN-vI~p~d 599 (961)
+...|.||.+.. ++|-++.. +....| .++.+.++...+|. |||||.+| .|...|
T Consensus 290 ~VPvG~DQ~~hlel~Rdia~r--fn~~~p--~~~~~~~l~gLdG~~~KMSKS~~ns~I~l~D 347 (451)
T 3foc_A 290 LIASGIEQDPYFRLARDLAPR--MGHPKN--AYLLGKFLPGLQGSGTKMSASDPNSAIYLTD 347 (451)
T ss_dssp EEEECTTTHHHHHHHHHHTTT--TTSCCC--EEEEECCCCBTTBTTCCCCTTCGGGSCBTTC
T ss_pred eeeeecchHHHHHHHHHHHHH--hCCCCC--eeecCCcccCCCCCCCccCCCCCCCeeeecC
Confidence 445699997643 33333321 222234 46678888888885 99999998 676543
No 99
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=75.96 E-value=2 Score=47.70 Aligned_cols=56 Identities=14% Similarity=0.188 Sum_probs=37.7
Q ss_pred HHhCCCCCCCCC--------CCCCCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCC
Q 002136 75 WESQGYFKPNFE--------RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (961)
Q Consensus 75 W~~~~~f~~~~~--------~~~~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G 135 (961)
|.++|+|-...+ +.+++|+|.+| =-|||.|||||..+.. -.++....|++|.+..+
T Consensus 46 ~lrRgi~f~hRd~d~il~~~e~gk~~~v~sG-~~PTG~lHLGhyv~~~----~~~~lq~~~~~~~~~Ia 109 (372)
T 3a04_A 46 LMRRGIIFGHRDFDKILEAKARGERVAVLTG-FMPSGKFHFGHKLTVD----QLIYLQKNGFKVFVAIA 109 (372)
T ss_dssp HHHTTSEEEEESHHHHHHHHHTTCCCEEEEE-ECCCSCCBHHHHHHHH----HHHHHHHTTCEEEEEEC
T ss_pred hhccceeeeccCHHHHHHHHHcCCCCEEEeC-cCCCcHhHHHHHHHHH----HHHHHHhCCCeEEEEEe
Confidence 677888743322 23677888777 5679999999988532 23444446999977654
No 100
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=75.54 E-value=4.3 Score=45.93 Aligned_cols=60 Identities=8% Similarity=0.305 Sum_probs=50.1
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 888 VDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 888 id~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
+|+.+-++.++++++++++++++++++|. +-|.. ++.+.|+.++++|+++.++.+.+.+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~--~k~~~~~~~~~~~~~~~~~~~~~~~~ 302 (426)
T 1lrz_A 243 INFDEYIKELNEERDILNKDLNKALKDIE------KRPEN--KKAHNKRDNLQQQLDANEQKIEEGKR 302 (426)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHH------HCTTC--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHhh------hCccc--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999993 23332 56678899999999999988887754
No 101
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=74.92 E-value=2.3 Score=48.72 Aligned_cols=59 Identities=14% Similarity=0.239 Sum_probs=39.1
Q ss_pred HHHhCCCCCCCCC--------CCCCCEEEeCCCCCcC-CCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCC
Q 002136 74 WWESQGYFKPNFE--------RGSDPFVISMPPPNVT-GSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGT 136 (961)
Q Consensus 74 ~W~~~~~f~~~~~--------~~~~~f~i~~ppPy~n-G~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~ 136 (961)
.+..+|+|....+ ..++++.+.++ --|| |.|||||...... ..++++.-|++|.+..|=
T Consensus 130 ~l~~RG~i~~~~d~~~l~~~l~~~~~~~vy~G-~dPTag~LHLGh~v~~~~---~~~lQ~~~g~~~iilI~D 197 (477)
T 1r6t_A 130 HFLRRGIFFSHRDMNQVLDAYENKKPFYLYTG-RGPSSEAMHVGHLIPFIF---TKWLQDVFNVPLVIQMTD 197 (477)
T ss_dssp HHHHTTSEEEEESHHHHHHHHHTTCCEEEEEE-ECCCTTCCBGGGHHHHHH---HHHHHHHHTCCEEEEECH
T ss_pred HHHhCCCccccCCHHHHHHHHhcCCCcEEEEc-ccCCCCCccHHHHHHHHH---HHHHHHHhCCcEEEEEec
Confidence 4556787754332 12467877777 5668 8999999987552 334555469988776654
No 102
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=74.36 E-value=1.8 Score=48.30 Aligned_cols=43 Identities=19% Similarity=0.147 Sum_probs=27.7
Q ss_pred CEEEeCCCCCcCCC-CCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCC
Q 002136 91 PFVISMPPPNVTGS-LHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDH 138 (961)
Q Consensus 91 ~f~i~~ppPy~nG~-LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~ 138 (961)
+..+.++ --|||. |||||.+. + -.+.++++ .|+++++..|=.|
T Consensus 64 ~~~vy~G-~dPTg~sLHlGhlv~-l--~~l~~lQ~-~G~~~~~lIgD~h 107 (392)
T 1y42_X 64 RIGAYVG-IDPTAPSLHVGHLLP-L--MPLFWMYL-EGYKAFTLIGGST 107 (392)
T ss_dssp CCEEEEE-ECCCSSSCBGGGHHH-H--HHHHHHHH-HTCEEEEEECTTT
T ss_pred CCEEEEe-ecCCCCCccHHHHHH-H--HHHHHHHH-cCCcEEEEEcCce
Confidence 4444444 345999 99999873 2 23556665 4999888766433
No 103
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=73.73 E-value=1.6 Score=48.60 Aligned_cols=39 Identities=15% Similarity=0.163 Sum_probs=26.0
Q ss_pred EEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCC
Q 002136 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (961)
Q Consensus 92 f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G 135 (961)
..+.++.- |||.|||||.++.+. ..++++ .|+++.+..|
T Consensus 36 ~~vy~G~~-PTG~lHlG~~~~~l~---~~~~~q-~g~~~i~~I~ 74 (372)
T 1n3l_A 36 LKIYWGTA-TTGKPHVAYFVPMSK---IADFLK-AGCEVTILFA 74 (372)
T ss_dssp CEEEEEEC-CSSCCBGGGHHHHHH---HHHHHH-TTCEEEEEEC
T ss_pred CEEEeCcC-CCCcccHHHHHHHHH---HHHHHH-CCCCEEEEEc
Confidence 34444422 699999999877554 445555 6888877655
No 104
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=73.60 E-value=1.8 Score=48.53 Aligned_cols=58 Identities=10% Similarity=0.166 Sum_probs=38.3
Q ss_pred HHHhCCCCCCCCC--------CCCCCEEEeCCCCCcCC-CCCCchhhHhHHHHHHHHHHHHcCCCeeecCC
Q 002136 74 WWESQGYFKPNFE--------RGSDPFVISMPPPNVTG-SLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (961)
Q Consensus 74 ~W~~~~~f~~~~~--------~~~~~f~i~~ppPy~nG-~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G 135 (961)
.+.++|+|-...+ ..+++|.+.++ --||| .|||||..... ...++++.-|..+.+..|
T Consensus 76 ~~~~RG~i~~~~d~~~ll~~~~~~~p~~vy~G-~~PTg~~lHLGh~v~~~---~~~~lQ~~~g~~~~i~Ia 142 (406)
T 3tze_A 76 YFFRRGIVFAHRDFNLLLDEIANNRPFYLYTG-RGPSSKTMHIGHTIPFL---LCKYMQDAFKIRLVIQIT 142 (406)
T ss_dssp HHHHTTSEEEEESHHHHHHHHHTTCCEEEEEE-ECCCSSCCBGGGHHHHH---HHHHHHHHHTCCEEEEEC
T ss_pred HHHhCCCeeccccHHHHHHHHhcCCCeEEEEe-eCCCCCcccHHHHHHHH---HHHHHHHhcCCcEEEEee
Confidence 4667787743222 13567888887 67798 89999977642 334466665888777544
No 105
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=73.06 E-value=1.3 Score=49.12 Aligned_cols=60 Identities=20% Similarity=0.120 Sum_probs=35.9
Q ss_pred cceEeeeccccc-cHHHHHHHHHhHhcCCCCceEEEEeceEEcCCCccccccCCC-ccCchh
Q 002136 540 TTMLETGHDILF-FWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGN-VIDPID 599 (961)
Q Consensus 540 ~d~~~~G~Dil~-fw~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GN-vI~p~d 599 (961)
+.+...|.||.. +=++|-++.-+...-..|.-....|.++-..+|+|||||.+| .|...|
T Consensus 209 a~~VPVG~DQ~~hleltRdiA~rfn~~~~~~~P~~~~~~~~pgldG~KmS~S~~ns~I~l~D 270 (372)
T 3a04_A 209 HVVVPVGADQDPHLRLTRDLADRMAGVVELERPASTYHKLQPGLDGRKMSSSRPDSTIFLTD 270 (372)
T ss_dssp CEEEEEEGGGHHHHHHHHHHHHHTTTTSCCCCCEEEEECCCBCTTSSBCCTTSGGGSCBTTC
T ss_pred ceecccchhhHHHHHHHHHHHHHhcCcccccChhhhhhcccCCCCCCccCCCCCCcccccCC
Confidence 445667999875 344554543322111123235666777777899999999854 665544
No 106
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=72.94 E-value=0.94 Score=49.97 Aligned_cols=30 Identities=27% Similarity=0.299 Sum_probs=19.4
Q ss_pred cCCCCCCchhhHhHHHHHHHHHHHHc-CCCeeecCC
Q 002136 101 VTGSLHMGHAMFVTLEDIMVRYHRMK-GRPTLWLPG 135 (961)
Q Consensus 101 ~nG~LHiGHa~~~~~~Di~~R~~rm~-G~~Vl~~~G 135 (961)
|||.|||||.++.+ ..|.+++ .+++++..|
T Consensus 31 PTG~lHLGn~~g~l-----~~~~~lQ~~~~~~~~Ia 61 (351)
T 1yi8_B 31 PTGALHLGHLAGSL-----QNRVRLQDEAELFVLLA 61 (351)
T ss_dssp CSSCCBHHHHHHTH-----HHHHHHTSSSEEEEEEC
T ss_pred CCCCccHHHHHHHH-----HHHHHHHHhCCeEEEEe
Confidence 48999999998754 2333333 367766554
No 107
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=72.87 E-value=1.2 Score=49.53 Aligned_cols=73 Identities=14% Similarity=0.221 Sum_probs=41.1
Q ss_pred CcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHH-HHHH
Q 002136 100 NVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWK-EKYG 178 (961)
Q Consensus 100 y~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~~q~~vek~l~~~g~~~~~~~~~~f~~~~~~~~-~~~~ 178 (961)
-|||.|||||.+..+ -.+.++++ .|+++.+..|=.| ++- . ...|.++ +.+.+++ .++.
T Consensus 41 ~PTg~lHlG~yl~~l--~~~~~lQ~-~G~~~~~~iaD~h-a~~----~----~~~g~~~---------e~i~~~~~~~~~ 99 (375)
T 2cyc_A 41 EISGYIHLGTGLMAG--AKIADFQK-AGIKTRVFLADWH-SWI----N----DKLGGDL---------EVIQEVALKYFK 99 (375)
T ss_dssp CCCSCCBHHHHHHHH--HHHHHHHH-TTCBCEEEECHHH-HHH----T----TGGGGCH---------HHHHHHHHHTHH
T ss_pred CCCCCcCchHHHHHH--HHHHHHHH-CCCcEEEEecCcE-EEc----C----CCCCCCH---------HHHHHHHHHHHH
Confidence 348999999955533 22455565 4898877765333 211 0 0012222 2344455 5555
Q ss_pred HHHHHHHHHhCCccC
Q 002136 179 GTITSQIKRLGASCD 193 (961)
Q Consensus 179 ~~i~~~l~~lG~s~D 193 (961)
..+..++..+|+..+
T Consensus 100 ~~~~~~~la~G~dp~ 114 (375)
T 2cyc_A 100 VGMEKSIEVMGGDPK 114 (375)
T ss_dssp HHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHhCCCcc
Confidence 556688899997554
No 108
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=72.48 E-value=2.1 Score=46.91 Aligned_cols=32 Identities=25% Similarity=0.408 Sum_probs=22.2
Q ss_pred cCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCC
Q 002136 101 VTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (961)
Q Consensus 101 ~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G 135 (961)
|||.|||||.++.+. -+.+++ -.|++|.+..|
T Consensus 21 PTG~lHLGn~~g~l~--~~~~lQ-~~G~~~~~~Ia 52 (340)
T 2g36_A 21 PTGKLHIGHLVGALE--NWVKLQ-EEGNECFYFVA 52 (340)
T ss_dssp CCSSCBHHHHHTHHH--HHHHHH-HTTCEEEEEEC
T ss_pred CCCcccHHhHHHHHH--HHHHHH-HCCCCEEEEEe
Confidence 389999999987542 334444 35899888763
No 109
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=71.92 E-value=1.1 Score=49.39 Aligned_cols=31 Identities=13% Similarity=0.253 Sum_probs=21.4
Q ss_pred cCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCC
Q 002136 101 VTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (961)
Q Consensus 101 ~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G 135 (961)
|||.|||||.++.+.. +.+++. |+++++..|
T Consensus 13 PTG~lHLGn~vg~l~~--~~~lQ~--~~~~~~~Ia 43 (348)
T 2yy5_A 13 ASGKQHLGNYLGVMQS--LIELQE--QCQLFVFVA 43 (348)
T ss_dssp CCTTCBHHHHHHTGGG--HHHHHH--HSEEEEEEC
T ss_pred CCCcccHHHHHHHHHH--HHHHHh--CCcEEEEEc
Confidence 4899999999876522 234554 788776655
No 110
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=71.40 E-value=0.98 Score=50.32 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=26.3
Q ss_pred EeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCC
Q 002136 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAG 140 (961)
Q Consensus 94 i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~G 140 (961)
|.+| --|||.|||||..+.+.. +.+++ .|++|.+..+ |-|+
T Consensus 38 i~sG-~~PTG~lHLGhyvGal~~--~~~LQ--~~~~~~~~Ia-D~hA 78 (388)
T 3prh_A 38 IFSG-IQPSGSVTLGNYIGAMKQ--FVELQ--HDYNSYFCIV-DQHA 78 (388)
T ss_dssp EEEE-ECCCSCCBHHHHHHTHHH--HHHTT--TTSEEEEEEC-HHHH
T ss_pred EEEe-eCCCCcchHHHHHHHHHH--HHHHH--ccCcEEEEEe-ccee
Confidence 5555 456999999999876532 22233 3899877654 4443
No 111
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=71.05 E-value=13 Score=32.65 Aligned_cols=63 Identities=24% Similarity=0.299 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcC-chhhccCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 891 SAEVQRLSKRLSKMQSEYDGLVARLSS-SKFVEKAPEDVV----RGVQEKAAEAEEKINLTKNRLAFL 953 (961)
Q Consensus 891 ~~e~~rl~k~~~kl~~~~~~~~~kl~n-~~f~~kap~~vv----~~~~~kl~~~~~~l~~~~~~l~~l 953 (961)
-..+++|++++...++++.-..+||.. +.=.++-|.+|- +.-+.-.+.++.+|..++..|++.
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~ 101 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345888999999999998888888876 333467776664 333444455555555555555543
No 112
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=68.69 E-value=2.1 Score=26.98 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=18.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHH
Q 002136 889 DISAEVQRLSKRLSKMQSEYDGL 911 (961)
Q Consensus 889 d~~~e~~rl~k~~~kl~~~~~~~ 911 (961)
.+++.+.||+|+..||+.+++++
T Consensus 5 kldanvkrlekevgklegevarl 27 (28)
T 4dac_A 5 KLDANVKRLEKEVGKLEGEVARL 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTC
T ss_pred eccccHHHHHHHHhhhhhhhhhc
Confidence 46677889999999988887654
No 113
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=68.25 E-value=14 Score=30.86 Aligned_cols=61 Identities=20% Similarity=0.261 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhcC-chhhccCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 893 EVQRLSKRLSKMQSEYDGLVARLSS-SKFVEKAPEDVV----RGVQEKAAEAEEKINLTKNRLAFL 953 (961)
Q Consensus 893 e~~rl~k~~~kl~~~~~~~~~kl~n-~~f~~kap~~vv----~~~~~kl~~~~~~l~~~~~~l~~l 953 (961)
.+++|++++...++++.-..+||.. +.=.++-|.+|- ..-+.-.+.++.+|..++..|+..
T Consensus 6 ~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd~ 71 (78)
T 2ic6_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADL 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666666655 223356666653 334444555555555555555543
No 114
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=67.42 E-value=2.9 Score=47.35 Aligned_cols=58 Identities=16% Similarity=0.267 Sum_probs=38.3
Q ss_pred HHHhCCCCCCCCC--------CCCCCEEEeCCCCCcC-CCCCCchhhHhHHHHHHHHHHHHcCCCeeecCC
Q 002136 74 WWESQGYFKPNFE--------RGSDPFVISMPPPNVT-GSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (961)
Q Consensus 74 ~W~~~~~f~~~~~--------~~~~~f~i~~ppPy~n-G~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G 135 (961)
.+..+|+|....+ ..++++.+.++ --|| |.|||||....+. +.+++..-|+++.+..|
T Consensus 77 ~l~~RG~i~~~~d~~~l~~~l~~g~~~~vy~G-~dPTag~LHLGh~v~~~~---l~~lQ~~~g~~~i~lI~ 143 (432)
T 2ip1_A 77 HFLRKGLFFSERDFTKILDLYEQGKPFFLYTG-RGPSSDSMHLGHMIPFVF---TKWLQEVFDVPLVIELT 143 (432)
T ss_dssp HHHHTTSEEEEESHHHHHHHHHHTCCCEEEEE-ECCCSSCCBGGGHHHHHH---HHHHHHHHTCCEEEEEC
T ss_pred HHHhCCCcccCCCHHHHHHHHhcCCCeEEEEe-ecCCCCCccHHHHHHHHH---HHHHHHHcCCeEEEEEe
Confidence 4566787764422 12456776666 5568 8999999986542 33566546998888777
No 115
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=65.56 E-value=1.7 Score=47.53 Aligned_cols=31 Identities=10% Similarity=0.039 Sum_probs=21.0
Q ss_pred cCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCC
Q 002136 101 VTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (961)
Q Consensus 101 ~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G 135 (961)
|||.|||||..+.+- -+.+++. |+++.+..+
T Consensus 15 PTG~lHLGhy~g~l~--~~~~lQ~--~~~~~~~ia 45 (341)
T 3sz3_A 15 PSGELSIGNYLGALR--QWQQMQD--DYDCQYCVV 45 (341)
T ss_dssp SSSCCBHHHHHHTGG--GHHHHHH--HSEEEEEEC
T ss_pred CCCcccHHHHHHHHH--HHHHHHh--cCeEEEEEe
Confidence 499999999987552 1334444 578776655
No 116
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=65.05 E-value=14 Score=32.79 Aligned_cols=59 Identities=19% Similarity=0.220 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHhcC-chhhccCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 895 QRLSKRLSKMQSEYDGLVARLSS-SKFVEKAPEDVV----RGVQEKAAEAEEKINLTKNRLAFL 953 (961)
Q Consensus 895 ~rl~k~~~kl~~~~~~~~~kl~n-~~f~~kap~~vv----~~~~~kl~~~~~~l~~~~~~l~~l 953 (961)
++|++++...++++.-..+||.. +.=+++-|.+|- ..-+.-.+.++.+|..++..|+..
T Consensus 25 eeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~ 88 (113)
T 4fi5_A 25 EELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLADR 88 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555544 222345555543 344444555555555555555544
No 117
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=64.61 E-value=3.5 Score=46.62 Aligned_cols=59 Identities=14% Similarity=0.239 Sum_probs=38.6
Q ss_pred HHHhCCCCCCCCC--------CCCCCEEEeCCCCCcC-CCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCC
Q 002136 74 WWESQGYFKPNFE--------RGSDPFVISMPPPNVT-GSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGT 136 (961)
Q Consensus 74 ~W~~~~~f~~~~~--------~~~~~f~i~~ppPy~n-G~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~ 136 (961)
.+.++|+|....+ ..++++.+.++ --|| |.|||||...... ..+++..-|+++.+..|=
T Consensus 83 ~l~~RG~i~~~~d~~~l~~~l~~~~~~~vy~G-~dPTag~LHLGh~v~~~~---~~~lQ~~~G~~~iilIgD 150 (437)
T 1r6u_A 83 HFLRRGIFFSHRDMNQVLDAYENKKPFYLYTG-RGPSSEAMHVGHLIPFIF---TKWLQDVFNVPLVIQMTD 150 (437)
T ss_dssp HHHHHTSEEEEESHHHHHHHHTTTCCEEEEEE-ECCCSSCCBHHHHHHHHH---HHHHHHHHTCCEEEEECH
T ss_pred HHHhCCCccCCCCHHHHHHHHhcCCCcEEEEc-ccCCCCCccHHHHHHHHH---HHHHHHHhCCcEEEEEec
Confidence 4556677654322 12457877777 5668 8999999987542 335555469988777654
No 118
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=64.02 E-value=18 Score=32.96 Aligned_cols=61 Identities=16% Similarity=0.273 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhcC------chhhccC---C----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 894 VQRLSKRLSKMQSEYDGLVARLSS------SKFVEKA---P----EDVVRGVQEKAAEAEEKINLTKNRLAFLR 954 (961)
Q Consensus 894 ~~rl~k~~~kl~~~~~~~~~kl~n------~~f~~ka---p----~~vv~~~~~kl~~~~~~l~~~~~~l~~l~ 954 (961)
...++++++.++++++++++.+.. ++|...+ | -++-+.+-++|++++.++..++..++.+.
T Consensus 8 ~~~l~~KvAElekkv~~lek~lk~~~e~d~e~y~ke~~~~~~qsele~k~aeLe~leeL~~ki~eL~~kvA~le 81 (125)
T 2pms_C 8 EVAPQAKIAELENQVHRLEQELKEIDESESEDYAKEGFRAPLQSKLDAKKAKLSKLEELSDKIDELDAEIAKLE 81 (125)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHTTTTCC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 345666666666666666666654 3343331 1 11333444555666666666666666554
No 119
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=63.92 E-value=11 Score=35.51 Aligned_cols=61 Identities=15% Similarity=0.169 Sum_probs=36.9
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 888 VDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 888 id~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
+....+.+.|+.+++.+.+++..+...|..-.- ..+..++++++++.++..++..+..|..
T Consensus 71 ~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~-------k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 71 FKAKKMADSLSLDIENKDKEIYDLKHELIAAQI-------KAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666777777777777777665544333 3455555566666666666666666554
No 120
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=62.03 E-value=18 Score=31.28 Aligned_cols=60 Identities=20% Similarity=0.266 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhcC-chhhccCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 894 VQRLSKRLSKMQSEYDGLVARLSS-SKFVEKAPEDVV----RGVQEKAAEAEEKINLTKNRLAFL 953 (961)
Q Consensus 894 ~~rl~k~~~kl~~~~~~~~~kl~n-~~f~~kap~~vv----~~~~~kl~~~~~~l~~~~~~l~~l 953 (961)
+++|++++...++++.-..+||.. +.=.++-|.+|- ..-+.-...++.+|..++..|+..
T Consensus 7 i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd~ 71 (96)
T 2ic9_A 7 LKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADL 71 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555544 222345555543 333444455555555555555443
No 121
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=61.47 E-value=16 Score=34.35 Aligned_cols=25 Identities=8% Similarity=0.124 Sum_probs=12.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 889 DISAEVQRLSKRLSKMQSEYDGLVA 913 (961)
Q Consensus 889 d~~~e~~rl~k~~~kl~~~~~~~~~ 913 (961)
++..|.-+++.+.+.++.+++.+.+
T Consensus 65 NiadEl~k~~~~~~~L~~~l~~~~k 89 (138)
T 3hnw_A 65 NIADDYFKAKKMADSLSLDIENKDK 89 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555554443
No 122
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=60.18 E-value=3.4 Score=45.53 Aligned_cols=42 Identities=26% Similarity=0.366 Sum_probs=27.5
Q ss_pred EEEeCCCCCcCCC-CCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCC
Q 002136 92 FVISMPPPNVTGS-LHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDH 138 (961)
Q Consensus 92 f~i~~ppPy~nG~-LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~ 138 (961)
+.+.++ --|||. ||||| +..+. .+.++++ .|+++++..|=.|
T Consensus 47 ~~vy~G-~~PTg~sLHLGh-l~~l~--~~~~lQ~-~G~~~~~lIaD~h 89 (356)
T 2pid_A 47 QTIYCG-FDPTADSLHVGH-LLALL--GLFHLQR-AGHNVIALVGGAT 89 (356)
T ss_dssp CEEEEE-ECCSSSSCBHHH-HHHHH--HHHHHHH-TTCEEEEEECTTG
T ss_pred CEEEEe-ecCCCCcccHHH-HHHHH--HHHHHHH-CCCcEEEEEccce
Confidence 555555 445996 99999 44443 3566665 4999888776433
No 123
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=60.08 E-value=4.4 Score=45.70 Aligned_cols=96 Identities=18% Similarity=0.298 Sum_probs=51.8
Q ss_pred HHHHHHhCCCCCCCCC-C------CCCCEEEeCCCCCcCCC-CCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCCCCch
Q 002136 71 IYNWWESQGYFKPNFE-R------GSDPFVISMPPPNVTGS-LHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIA 142 (961)
Q Consensus 71 ~~~~W~~~~~f~~~~~-~------~~~~f~i~~ppPy~nG~-LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~~Gl~ 142 (961)
+.+...++|+++...+ . .++++.+.++ --|||. |||||... + -.+.++++ .|+++++..|=.| |+-
T Consensus 5 ~~~~l~~Rg~~~~~~~~~~L~~~L~~~~~~iy~G-~dPTg~sLHlGh~v~-l--~~~~~lQ~-~G~~~~~lIgd~t-a~i 78 (420)
T 1jil_A 5 LIEDLKWRGLIYQQTDEQGIEDLLNKEQVTLYCG-ADPTADSLHIGHLLP-F--LTLRRFQE-HGHRPIVLIGGGT-GMI 78 (420)
T ss_dssp HHHHHHHTTCCCCBSCHHHHHHHHHHSCCEEEEE-ECCSSSSCBHHHHHH-H--HHHHHHHH-TTCEEEEEECTTG-GGT
T ss_pred HHHHHHHcCchhhcCCHHHHHHHHcCCCCEEEEe-eCCCCCCccHHHHHH-H--HHHHHHHH-CCCcEEEEEcCce-eEe
Confidence 3445556676662211 0 1234444444 445998 99999773 2 23556664 5999988877444 321
Q ss_pred HHHHHHHHHHHcCC--CccccCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 143 TQLVVEKMLAAEGI--KRVELSRDEFTKRVWEWKEKYGGTITSQIKRL 188 (961)
Q Consensus 143 ~q~~vek~l~~~g~--~~~~~~~~~f~~~~~~~~~~~~~~i~~~l~~l 188 (961)
. -..|+ ++..++.++.. ++...++.|+.++
T Consensus 79 g--------dp~gk~~~R~~l~~e~i~--------~n~~~~~~~~~~~ 110 (420)
T 1jil_A 79 G--------DPSGKSEERVLQTEEQVD--------KNIEGISKQMHNI 110 (420)
T ss_dssp C--------CCTTCSSCCCCCCHHHHH--------HHHHHHHHHHHHH
T ss_pred c--------CCCccccccccCCHHHHH--------HHHHHHHHHHHHH
Confidence 0 00122 23334544432 4556678888887
No 124
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=59.26 E-value=4.3 Score=45.82 Aligned_cols=41 Identities=29% Similarity=0.535 Sum_probs=26.3
Q ss_pred CEEEeCCCCCcCCC-CCCchhhHhHHHHHHHHHHHHcCCCeeecCCC
Q 002136 91 PFVISMPPPNVTGS-LHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGT 136 (961)
Q Consensus 91 ~f~i~~ppPy~nG~-LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~ 136 (961)
++.+.++ --|||+ ||||| +..+. .+.++++ .|+++++..|=
T Consensus 32 ~~~iy~G-~dPTg~sLHLGh-lv~l~--~l~~lQ~-~G~~~i~lIgD 73 (432)
T 2jan_A 32 PMTVYAG-FDPTAPSLHAGH-LVPLL--TLRRFQR-AGHRPIVLAGG 73 (432)
T ss_dssp CCEEEEE-ECCSSSSCBGGG-HHHHH--HHHHHHH-TTCEEEEEECH
T ss_pred CCEEEEe-eCCCCCCcCHHH-HHHHH--HHHHHHH-CCCcEEEEEcC
Confidence 3444444 445995 99999 44333 3666665 59999887653
No 125
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=55.84 E-value=3 Score=45.75 Aligned_cols=31 Identities=16% Similarity=0.232 Sum_probs=20.1
Q ss_pred CcCCCCCCchhhHhHHHHHHHHHHHH-cCCCeeecCC
Q 002136 100 NVTGSLHMGHAMFVTLEDIMVRYHRM-KGRPTLWLPG 135 (961)
Q Consensus 100 y~nG~LHiGHa~~~~~~Di~~R~~rm-~G~~Vl~~~G 135 (961)
-|||.|||||..+.+ ..|.++ .|+++.+..+
T Consensus 23 ~PTG~lHLGh~vg~l-----~~~~~lQ~~~~~~~~ia 54 (346)
T 3n9i_A 23 QPSGELTIGNYMGAL-----RQWVQMQDDYDCIYCIV 54 (346)
T ss_dssp CSCSCCBHHHHHHTH-----HHHHTTTTTSEEEEEEC
T ss_pred CCCCcccHHHHHHHH-----HHHHHHHhhCcEEEEEe
Confidence 348999999988764 222222 3778766554
No 126
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=55.63 E-value=5.5 Score=45.04 Aligned_cols=44 Identities=23% Similarity=0.446 Sum_probs=28.2
Q ss_pred CCEEEeCCCCCcCCC-CCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCC
Q 002136 90 DPFVISMPPPNVTGS-LHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDH 138 (961)
Q Consensus 90 ~~f~i~~ppPy~nG~-LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~ 138 (961)
+++.+..+ --|||. |||||... --.+.++++ .|+++.+..|=.|
T Consensus 36 ~~~~vy~G-~dPTg~sLHlGh~v~---l~~l~~lQ~-~G~~~i~lIgD~t 80 (432)
T 1h3f_A 36 RPLTVKLG-ADPTRPDLHLGHAVV---LRKMRQFQE-LGHKVVLIIGDFT 80 (432)
T ss_dssp SCCEEEEE-ECTTCCSCBHHHHHH---HHHHHHHHH-TTCEEEEEECCCC
T ss_pred CCcEEEEc-ccCCCCCCchhhHHH---HHHHHHHHH-CCCCEEEEEccce
Confidence 44455454 445985 99999772 234555554 4999888777444
No 127
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=54.43 E-value=5.1 Score=43.53 Aligned_cols=39 Identities=23% Similarity=0.356 Sum_probs=25.2
Q ss_pred EEEeCCCCCcCCC-CCCchhhHhHHHHHHHHHHHHcCCCeeecCC
Q 002136 92 FVISMPPPNVTGS-LHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (961)
Q Consensus 92 f~i~~ppPy~nG~-LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G 135 (961)
+.+.++ --|||. |||||... --.+.++++ .|+++++..|
T Consensus 34 ~~vy~G-~~PTg~slHlGh~l~---l~~~~~lQ~-~g~~~~~~i~ 73 (322)
T 2yxn_A 34 IALVCG-FDPTADSLHLGHLVP---LLCLKRFQQ-AGHKPVALVG 73 (322)
T ss_dssp CEEEEE-ECCSSSSCBHHHHHH---HHHHHHHHH-TTCEEEEEEC
T ss_pred CEEEEe-ecCCCCcccHHHHHH---HHHHHHHHH-cCCcEEEEEc
Confidence 344444 344999 99999772 233555554 4899888766
No 128
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=54.20 E-value=6.3 Score=44.36 Aligned_cols=43 Identities=23% Similarity=0.316 Sum_probs=27.4
Q ss_pred CEEEeCCCCCcCCC-CCCchhhHhHHHHHHHHHHHHcCCCeeecCCCCC
Q 002136 91 PFVISMPPPNVTGS-LHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDH 138 (961)
Q Consensus 91 ~f~i~~ppPy~nG~-LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~D~ 138 (961)
+..+.++ --|||. |||||... + -.+.++++ .|+++++..|=.|
T Consensus 30 ~~~iy~G-~dPTg~sLHlGh~v~-l--~~l~~lQ~-~G~~~i~lIgd~t 73 (419)
T 2ts1_A 30 RVTLYCG-FDPTADSLHIGHLAT-I--LTMRRFQQ-AGHRPIALVGGAT 73 (419)
T ss_dssp CCEEEEE-ECCSSSSCBGGGHHH-H--HHHHHHHH-TTCEEEEEECTTG
T ss_pred CCEEEEe-eCCCCCCccHHHHHH-H--HHHHHHHH-CCCcEEEEEcCce
Confidence 3344444 344998 99999773 2 23556654 5999988876444
No 129
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A
Probab=54.11 E-value=63 Score=28.79 Aligned_cols=59 Identities=12% Similarity=0.055 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhh
Q 002136 898 SKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKI--------NLTKNRLAFLRST 956 (961)
Q Consensus 898 ~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l--------~~~~~~l~~l~~~ 956 (961)
..-+..++.-+-.+++.|.++.|-.+.+++..+..++++.+++.-| +.++.+++.|++.
T Consensus 8 ieakN~lEs~iy~~e~~l~e~~~~~kl~~eek~~i~~~i~e~~~wL~~~~~a~~e~i~~k~~eL~~~ 74 (113)
T 3lof_A 8 VSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQV 74 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHTCGGGBTTBCHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcchhhhccCCHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHH
Confidence 3445567777888888998888999999999888888888776543 4455666666553
No 130
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=53.67 E-value=57 Score=29.78 Aligned_cols=59 Identities=15% Similarity=0.277 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 894 VQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAF 952 (961)
Q Consensus 894 ~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~ 952 (961)
++.|++++..|+.+++.++..+++-.=...+-..+.+..+.+++.-++++++.++.|..
T Consensus 63 leeL~~ki~eL~~kvA~le~e~~~~e~~~~~~~~~~e~le~~la~KkAEleKtqa~Ld~ 121 (125)
T 2pms_C 63 LEELSDKIDELDAEIAKLEDQLKAAEENNNVEDYFKEGLEKTIAAKKAELEKTEADLKK 121 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688888889999999998888743356677778888899999999999888876653
No 131
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=53.57 E-value=1.4e+02 Score=27.98 Aligned_cols=46 Identities=15% Similarity=0.150 Sum_probs=34.2
Q ss_pred CcEEEEecCCeEEEecCC-Cc---cChHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 868 QSVHLVASEGLEAYLPLA-DM---VDISAEVQRLSKRLSKMQSEYDGLVA 913 (961)
Q Consensus 868 ~~v~~~v~~~~~~~~~l~-~~---id~~~e~~rl~k~~~kl~~~~~~~~~ 913 (961)
-++...+.+.-.|++.+. |. .+.+.-++-++++++.+++.++++++
T Consensus 70 ~yv~g~i~~~~~V~v~lG~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~ 119 (151)
T 2zdi_C 70 SFLKGVIVDKNNAIVSVGSGYAVERSIDEAISFLEKRLKEYDEAIKKTQG 119 (151)
T ss_dssp CEEEEECSCTTEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEECCCCEEEEEeCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555656666777765 32 37888888899999999999998877
No 132
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=52.89 E-value=6.4 Score=43.21 Aligned_cols=43 Identities=12% Similarity=0.084 Sum_probs=27.3
Q ss_pred CCEEEeCCCCCcCCCCCCchhhHhHHHHHHHHHHHHcCCCeeecCCC
Q 002136 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGT 136 (961)
Q Consensus 90 ~~f~i~~ppPy~nG~LHiGHa~~~~~~Di~~R~~rm~G~~Vl~~~G~ 136 (961)
+++.+.+| --|||.|||||.+..+ -.+.++++ .|+++.+..|=
T Consensus 39 ~~~~vy~G-~~PTg~lHlGhyl~~l--~~~~~lQ~-~G~~~~~~i~D 81 (348)
T 2j5b_A 39 RIFTAYNG-FEPSGRIHIAQALITV--MNTNNMIE-CGGQMIIYIAD 81 (348)
T ss_dssp CCEEEEEE-ECCCSSCBHHHHHHHH--HHHHHHHH-TTEEEEEEECH
T ss_pred CCCEEEec-cCCCCCCchhHHHHHH--HHHHHHHH-cCCcEEEEecc
Confidence 45555555 3568999999943332 23456665 48988776653
No 133
>2lq4_p Lysophosphatidic acid receptor 1; GPCR, G protein-coupled receptor, de novo protein; NMR {Artificial gene}
Probab=51.12 E-value=0.55 Score=36.69 Aligned_cols=63 Identities=22% Similarity=0.245 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 893 EVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 893 e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
|+..|+|+++.++++++.-+-.-.-++--+-||----..-+.||++++=++..+.+.-+.|+.
T Consensus 14 elqalekelaqlekelqawncicdiencsnmaplysdqalkkklaqlkwklqalkkknaqlkk 76 (80)
T 2lq4_p 14 ELQALEKELAQLEKELQAWNCICDIENCSNMAPLYSDQALKKKLAQLKWKLQALKKKNAQLKK 76 (80)
T ss_dssp TTHHHHTTHHHHHHHHTTTCSSCCCCCCCSSCCCCCSTTTHHHHHTTHHHHHHHTTTTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 345566666666666666555555566667777665566677788877777766665444443
No 134
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=51.02 E-value=26 Score=40.42 Aligned_cols=87 Identities=16% Similarity=0.107 Sum_probs=56.4
Q ss_pred ceEeeeccccccHHHHHHHHHhHhcCCCCceEEEEeceEEcCCCccccccCCCccCchhhhhh-cChhHHHHHHHhCCC-
Q 002136 541 TMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE-FGADALRFTISLGTA- 618 (961)
Q Consensus 541 d~~~~G~Dil~fw~~~~i~~~~~l~~~~Pfk~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~-yGaDalR~~L~~~~~- 618 (961)
.-.+=|.|.+-.=+ +.+.+--++.-..| ...-|+++++.+|+|+||+.|.. ...+..++ |=++|+.=||+..+.
T Consensus 231 THViRG~D~l~sTp-~q~~l~~alg~~~P--~y~H~pli~~~~g~kLSKR~~~~-~v~~~~~~G~lPeAl~NyLalLGws 306 (512)
T 4gri_A 231 THVLRAQEWVSSGP-LHVLLYKAFKWKPP--IYCHLPMVMGNDGQKLSKRHGST-ALRQFIEDGYLPEAIINYVTLLGWS 306 (512)
T ss_dssp SEEEEEGGGGGGHH-HHHHHHHHHTCCCC--EEEEECCCBCTTSSBCCTTTSCC-BHHHHHHHTCCHHHHHHHHHHSSBC
T ss_pred ceeccccccccccH-HHHHHHHHcCCCCC--eEEecchhccccccccCcccccc-cHHHHHHcCCChHHHHHHHHHhCCC
Confidence 34455888664311 11122222333445 67778999999999999998864 56777766 889999999887554
Q ss_pred -CC-ccccCHHHHHH
Q 002136 619 -GQ-DLSLSIERLTA 631 (961)
Q Consensus 619 -~~-D~~f~~~~~~~ 631 (961)
+. .--|+.+.+..
T Consensus 307 ~~~~~Eifs~~eli~ 321 (512)
T 4gri_A 307 YDDKREFFSKNDLEQ 321 (512)
T ss_dssp SSSSCCCCCHHHHHH
T ss_pred CcccchhhhHHHHHH
Confidence 32 34588776653
No 135
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=51.01 E-value=58 Score=28.65 Aligned_cols=58 Identities=24% Similarity=0.384 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLR 954 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~ 954 (961)
.+.|+.-|++++..++.++++++..|..- ....+.......+.+.+.+.++.+|.-|.
T Consensus 42 ~E~Ei~sL~kk~~~lE~eld~~ee~L~ea-------~~kLee~ek~~~~aE~ev~~L~RriqllE 99 (101)
T 3u1c_A 42 LEDDIVQLEKQLRVTEDSRDQVLEELHKS-------EDSLLFAEENAAKAESEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 56667777777777777777777666522 12334445556667777777777665543
No 136
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=50.22 E-value=44 Score=29.92 Aligned_cols=27 Identities=11% Similarity=0.277 Sum_probs=21.2
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhH
Q 002136 888 VDISAEVQRLSKRLSKMQSEYDGLVAR 914 (961)
Q Consensus 888 id~~~e~~rl~k~~~kl~~~~~~~~~k 914 (961)
.|++.-+..|+++++.+++++++++++
T Consensus 66 ~~~~ea~~~L~~~~e~ie~~i~~le~~ 92 (117)
T 2zqm_A 66 TTKDKAVAELKEKIETLEVRLNALERQ 92 (117)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777888888888888888777763
No 137
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=49.63 E-value=29 Score=31.00 Aligned_cols=78 Identities=14% Similarity=0.229 Sum_probs=52.6
Q ss_pred EEEecCCCccChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002136 879 EAYLPLADMVDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTVM 958 (961)
Q Consensus 879 ~~~~~l~~~id~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~~ 958 (961)
++.+++.... +..|++||.+.-+.+-|--+.....|..+ .++-=+++..+...++.+.+.+...-.+.++.+.++++
T Consensus 27 r~~~~~~sDP-L~~ELeRLr~~~d~~~K~HE~kklqLkse--~e~E~ae~k~KYD~~lqe~ese~~~kkK~le~~~~kV~ 103 (115)
T 3vem_A 27 QIPFPVFNDP-FLHELEKLRRESENSKKTFEEKKSILKAE--LERKMAEVQAEFRRKFHEVEAEHNTRTTKIEKDKNLVI 103 (115)
T ss_dssp ------CCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCccccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4454544432 78899999999888887766665555554 34445667777777888888888888888888887654
Q ss_pred c
Q 002136 959 V 959 (961)
Q Consensus 959 ~ 959 (961)
.
T Consensus 104 m 104 (115)
T 3vem_A 104 M 104 (115)
T ss_dssp H
T ss_pred H
Confidence 3
No 138
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=47.82 E-value=64 Score=28.41 Aligned_cols=60 Identities=8% Similarity=0.113 Sum_probs=48.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 889 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLR 954 (961)
Q Consensus 889 d~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~ 954 (961)
...+.+...+..++.++.-|++++--+.| +|+........|+.+|+.++.+++..++.++
T Consensus 35 erk~~i~~ie~~l~EA~ell~qMelE~r~------~p~~~R~~~~~klr~Yk~dL~~lk~elk~~~ 94 (102)
T 1vcs_A 35 EKKQMVANVEKQLEEARELLEQMDLEVRE------IPPQSRGMYSNRMRSYKQEMGKLETDFKRSR 94 (102)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTT------SCTTTHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666778888888888888887665554 4778889999999999999999999887765
No 139
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=46.54 E-value=1e+02 Score=26.90 Aligned_cols=53 Identities=19% Similarity=0.246 Sum_probs=36.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 889 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 889 d~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
+...++.+|+.++.....++.++...| ..++.+-.+.+.+...++..|++|.+
T Consensus 9 ~lre~l~~le~~~~~~~~e~~~L~~~l--------------~eE~~~R~~aE~~~~~ie~ElEeLTa 61 (97)
T 2eqb_B 9 QLKEDYNTLKRELSDRDDEVKRLREDI--------------AKENELRTKAEEEADKLNKEVEDLTA 61 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667888888888888888876643 45556666666666666666666654
No 140
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=45.16 E-value=30 Score=25.13 Aligned_cols=20 Identities=20% Similarity=0.424 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002136 892 AEVQRLSKRLSKMQSEYDGL 911 (961)
Q Consensus 892 ~e~~rl~k~~~kl~~~~~~~ 911 (961)
+||++-++++..+++.+..+
T Consensus 16 rEI~Kte~kI~~lqkKlkeL 35 (42)
T 2l5g_B 16 REITMVEQQISKLKKKQQQL 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443333
No 141
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=44.61 E-value=48 Score=41.92 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 930 RGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 930 ~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
+..++|++.++++.++|++++.+|.+
T Consensus 1019 ~~L~~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 1019 HETEQLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44557777777777777777777764
No 142
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=43.43 E-value=48 Score=27.73 Aligned_cols=53 Identities=23% Similarity=0.244 Sum_probs=39.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 889 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 889 d~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
+++.-+..||-+++..+..|+.++. +|.+-...+..++.++..+.++++++..
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~--------------~v~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSE--------------ALADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4677788999999999999999987 7777777788888888888777766653
No 143
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=43.18 E-value=99 Score=27.36 Aligned_cols=29 Identities=7% Similarity=0.102 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 927 DVVRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 927 ~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
++++..+.++.+++.++..+++.++.+..
T Consensus 64 ~~i~~~~~~l~~l~~~i~~l~~~i~~l~~ 92 (112)
T 1l8d_A 64 ELLSKYHLDLNNSKNTLAKLIDRKSELER 92 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777888888777777777777664
No 144
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=42.66 E-value=39 Score=32.14 Aligned_cols=60 Identities=18% Similarity=0.237 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHhHh--------cCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002136 898 SKRLSKMQSEYDGLVARL--------SSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTV 957 (961)
Q Consensus 898 ~k~~~kl~~~~~~~~~kl--------~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~ 957 (961)
++++.++++|++.|..-| ++......+-+.-+++-++++.+.+..+..++.+|..|+..+
T Consensus 78 E~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~ 145 (154)
T 2ocy_A 78 EEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVM 145 (154)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777778877776544 333333333334444555667777788888888888888754
No 145
>2wy7_Q SBI, IGG-binding protein; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Staphylococcus aureus} PDB: 2wy8_Q 2jvg_A 2jvh_A
Probab=42.61 E-value=53 Score=25.80 Aligned_cols=56 Identities=23% Similarity=0.255 Sum_probs=42.5
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhHhcC------chhhccCCHHHHHHHHHHHHHHHHHH
Q 002136 888 VDISAEVQRLSKRLSKMQSEYDGLVARLSS------SKFVEKAPEDVVRGVQEKAAEAEEKI 943 (961)
Q Consensus 888 id~~~e~~rl~k~~~kl~~~~~~~~~kl~n------~~f~~kap~~vv~~~~~kl~~~~~~l 943 (961)
+.+++.+.|-..+.++..-++++++.+=+- ..-++|||-+|.+..+.+|..+-+|.
T Consensus 12 vsiekaivrhdervKsqnpeISkpqikdsienrrlaqrevnkapmdvkehlqkqldalvaqk 73 (80)
T 2wy7_Q 12 VSIEKAIVRHDERVKSANDAISKLNEKDSIENRRLAQREVNKAPMDVKEHLQKQLDALVAQK 73 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHHHHhhcCccccccchhhhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhh
Confidence 457788888888888888888887655332 23578999999999888888776654
No 146
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=42.15 E-value=45 Score=29.27 Aligned_cols=59 Identities=12% Similarity=0.097 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHhHhcCchhhccCCHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002136 898 SKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVR------------GVQEKAAEAEEKINLTKNRLAFLRST 956 (961)
Q Consensus 898 ~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~------------~~~~kl~~~~~~l~~~~~~l~~l~~~ 956 (961)
+.+..+|++.|..+++.+..+..-..+=...+. ....+|.++..+|..|+..+..++..
T Consensus 14 eqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~ 84 (98)
T 2ke4_A 14 EQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAW 84 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666665554432222111111 11345555666666666655555543
No 147
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=41.85 E-value=2e+02 Score=26.14 Aligned_cols=65 Identities=5% Similarity=0.121 Sum_probs=42.8
Q ss_pred cEEEEecCCeEEEecCCC-c---cChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHH
Q 002136 869 SVHLVASEGLEAYLPLAD-M---VDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKIN 944 (961)
Q Consensus 869 ~v~~~v~~~~~~~~~l~~-~---id~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~ 944 (961)
.+...+.+.-+|++.+.. . .+.+.-++-++++++.+++.++.+++ .++..++++...++++.
T Consensus 61 yv~a~i~~~~~V~v~lG~g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~--------------~l~~l~~~i~~~~~~l~ 126 (133)
T 1fxk_C 61 FIKAELKDTSEVIMSVGAGVAIKKNFEDAMESIKSQKNELESTLQKMGE--------------NLRAITDIMMKLSPQAE 126 (133)
T ss_dssp EEEEECCSTTEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCEEEEEcCCCEEEEeeHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
Confidence 444455555567776653 2 37787888899999999999998877 33445555555555554
Q ss_pred HHH
Q 002136 945 LTK 947 (961)
Q Consensus 945 ~~~ 947 (961)
.+.
T Consensus 127 ~~~ 129 (133)
T 1fxk_C 127 ELL 129 (133)
T ss_dssp HHH
T ss_pred HHh
Confidence 444
No 148
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=41.01 E-value=1.4e+02 Score=25.25 Aligned_cols=30 Identities=13% Similarity=0.226 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 926 EDVVRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 926 ~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
.+-++.-++.+.++++++.+.++.|.+|+.
T Consensus 50 ~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 50 ENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 556677788888888888888888888764
No 149
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=40.67 E-value=89 Score=28.17 Aligned_cols=55 Identities=13% Similarity=0.103 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHh
Q 002136 901 LSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKI--------NLTKNRLAFLRS 955 (961)
Q Consensus 901 ~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l--------~~~~~~l~~l~~ 955 (961)
+..++.-+-.+++.|..+.|-.+.+++..++.++++.++++-| +.++.+++.|++
T Consensus 20 rN~aEsliy~~e~~L~e~~~~dkl~~eek~~I~~~i~el~~~L~~~~~ad~e~ik~k~~eL~~ 82 (120)
T 2p32_A 20 HMGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWLDSNQTAEKEEFEHQQKDLEG 82 (120)
T ss_dssp HHHHHHHHHHHHHHHTCTTTGGGSCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhchhhhccCCHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHH
Confidence 4556667777888887777888889888888888887776443 345555555554
No 150
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=40.31 E-value=63 Score=35.96 Aligned_cols=57 Identities=14% Similarity=0.226 Sum_probs=45.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 002136 889 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTVMV 959 (961)
Q Consensus 889 d~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~~~ 959 (961)
.++.+++.|+++++.++.+++.++. -.+..++++.+.+.+..++.+.+.+|+..|-|
T Consensus 7 ~~~~~~~~l~~~~~~l~~~~~~~~~--------------~~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV 63 (403)
T 4etp_A 7 ALKEKIAALKEKIAALKEKIKDTEL--------------GMKELNEILIKEETVRRTLHNELQELRGNIRV 63 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEE
Confidence 4667788888888888888888876 34566777888888888899999999887654
No 151
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=39.22 E-value=66 Score=36.04 Aligned_cols=63 Identities=22% Similarity=0.333 Sum_probs=42.9
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 887 MVDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 887 ~id~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
++.++++...++.+++.|+.+.+.+.+.+.. +..+ -.++.+++..++.++++.+++.+..+.+
T Consensus 30 ~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~-----~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (421)
T 1ses_A 30 LLALDREVQELKKRLQEVQTERNQVAKRVPK-----APPE-EKEALIARGKALGEEAKRLEEALREKEA 92 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-----SCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888889999999999999999998876 2222 2344455555566666666655555544
No 152
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=38.27 E-value=1.7e+02 Score=24.47 Aligned_cols=65 Identities=11% Similarity=0.111 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTV 957 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~ 957 (961)
+...+..|+|+-..|++.++.-..+-. .++.+= ...--..-.+-.-++.++..+...+.+|..++
T Consensus 11 Lr~~~d~L~kkq~~L~~~i~~e~~~Ak--~~~~kn-K~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~ 75 (79)
T 4abm_A 11 LRDTEEMLSKKQEFLEKKIEQELTAAK--KHGTKN-KRAALQALKRKKRYEKQLAQIDGTLSTIEFQR 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTTSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHcC-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555553332221 133221 22222223344567788888888888887754
No 153
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1
Probab=38.08 E-value=59 Score=28.86 Aligned_cols=43 Identities=14% Similarity=0.102 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHH
Q 002136 901 LSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKI 943 (961)
Q Consensus 901 ~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l 943 (961)
+..++.-+-.+++.|.++.|-.+.+++-.++.++++.++++-|
T Consensus 6 rN~aE~~iy~~e~~L~~~e~~~kl~~~ek~~i~~~i~~l~~~L 48 (113)
T 1ud0_A 6 SHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWL 48 (113)
T ss_dssp HHHHHHHHHHHHHHHTSGGGTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchhhhccCCHHHHHHHHHHHHHHHHHH
Confidence 4456667777778887666777888888877777777766444
No 154
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=38.05 E-value=50 Score=21.63 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVA 913 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~ 913 (961)
+.+|++.|.|+++.|.-|++.+.+
T Consensus 7 lkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456777777777777777766653
No 155
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=37.76 E-value=37 Score=24.08 Aligned_cols=40 Identities=30% Similarity=0.463 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002136 902 SKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRST 956 (961)
Q Consensus 902 ~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~ 956 (961)
+.+..+++.+.+ ++|- |+ .|+.+++++..+++.|+.|++.
T Consensus 3 aalkselqalkk----egfs---pe--------elaaleselqalekklaalksk 42 (48)
T 1g6u_A 3 AALKSELQALKK----EGFS---PE--------ELAALESELQALEKKLAALKSK 42 (48)
T ss_dssp HHHHHHHHHHHH----TTCS---HH--------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----cCCC---HH--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555443 6662 43 3455556666666666655543
No 156
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=36.94 E-value=73 Score=35.58 Aligned_cols=56 Identities=20% Similarity=0.215 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTVMV 959 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~~~ 959 (961)
++.|+..+++++++++.+++.++. -.+..+++|.+.+.+..++.+.+.+++..|.|
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~--------------~~~~~~~~l~~~~~~rr~l~n~~~~l~gnIrV 63 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAA--------------ELETCKEQLFQSNMERKELHNTVMDLRDNIRV 63 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 667778888888888888777755 44556677888888889999999999887654
No 157
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=36.76 E-value=1.5e+02 Score=26.05 Aligned_cols=55 Identities=9% Similarity=0.104 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRL 950 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l 950 (961)
..+.+...+..++.++.-|++++--+. .+|+........|+.+|+.++.+++..+
T Consensus 47 rk~~i~~ie~~ldEA~eLl~qMelE~r------~~p~s~R~~~~~klr~Yk~dL~~lk~el 101 (102)
T 2qyw_A 47 KKKLVRDFDEKQQEANETLAEMEEELR------YAPLTFRNPMMSKLRNYRKDLAKLHREV 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH------TSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------hCCHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444566677777777777777655443 4589999999999999999999988754
No 158
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=36.62 E-value=1e+02 Score=25.72 Aligned_cols=31 Identities=16% Similarity=0.368 Sum_probs=25.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCch
Q 002136 889 DISAEVQRLSKRLSKMQSEYDGLVARLSSSK 919 (961)
Q Consensus 889 d~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~ 919 (961)
++-.|+.-|.-++..++.|-.++++||.+-+
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK 53 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATK 53 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 4667888888899999999999999886543
No 159
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=36.26 E-value=1.2e+02 Score=29.78 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVA 913 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~ 913 (961)
+++++..++|+...|+..++++..
T Consensus 47 LE~eL~~~Ek~~~~L~~~~~~L~~ 70 (189)
T 2v71_A 47 LEAQLVQAEQRNRDLQADNQRLKY 70 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666555544
No 160
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=36.03 E-value=39 Score=24.51 Aligned_cols=26 Identities=8% Similarity=0.310 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHh
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVARL 915 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~kl 915 (961)
+-..+.|..++++|.+++|..+++|+
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKl 32 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQ 32 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666666666666555544
No 161
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=35.95 E-value=87 Score=27.38 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=20.4
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhH
Q 002136 888 VDISAEVQRLSKRLSKMQSEYDGLVAR 914 (961)
Q Consensus 888 id~~~e~~rl~k~~~kl~~~~~~~~~k 914 (961)
.|++.-...|+++++.+++++++++++
T Consensus 61 ~~~~e~~~~L~~~~e~i~~~i~~le~~ 87 (107)
T 1fxk_A 61 VAKDELTEELQEKLETLQLREKTIERQ 87 (107)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777888888888888777777653
No 162
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=35.73 E-value=86 Score=27.28 Aligned_cols=56 Identities=13% Similarity=0.131 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhcCchhhccC--CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 002136 893 EVQRLSKRLSKMQSEYDGLVARLSSSKFVEKA--PEDVVRGVQEKAAEAEEKINL-TKNRLAFLR 954 (961)
Q Consensus 893 e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~ka--p~~vv~~~~~kl~~~~~~l~~-~~~~l~~l~ 954 (961)
.+...+..++.+..-|++++--+ ..+ |+........|+.+|+.++.+ ++..+..|.
T Consensus 35 ~i~~ie~~ldEA~ell~qMelE~------~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l~ 93 (97)
T 3onj_A 35 TLKHVEQQQDELFDLLDQMDVEV------NNSIGDASERATYKAKLREWKKTIQSDIKRPLQSLV 93 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555555555555444433 345 889999999999999999999 999888774
No 163
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=35.54 E-value=69 Score=28.75 Aligned_cols=50 Identities=22% Similarity=0.303 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKN 948 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~ 948 (961)
..+|+.+|..++++++-.++.+.. .-..+++.+.....+.+.++|+++..
T Consensus 8 ~K~Eiq~L~drLD~~~rKlaaa~~---------rgd~~~i~qf~~E~~~l~k~I~~lk~ 57 (123)
T 2lf0_A 8 EKNEIKRLSDRLDAIRHQQADLSL---------VEAADKYAELEKEKATLEAEIARLRE 57 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCT---------TTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---------CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888777777766654 33445666666666666666666554
No 164
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=35.52 E-value=24 Score=30.32 Aligned_cols=57 Identities=12% Similarity=0.188 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 896 RLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFL 953 (961)
Q Consensus 896 rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l 953 (961)
+.+++++.|..+|++++.++..=.=.-..| ++-...-.+++++..++..++..|+.+
T Consensus 19 keqrEle~le~~Ie~LE~~i~~le~~ladp-~~y~~d~~~~~~l~~~l~~~e~eLe~~ 75 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEAKLEALQTQVADA-SFFSQPHEQTQKVLADMAAAEQELEQA 75 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHST-TGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-ccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777665532222222 222234456666666666666666544
No 165
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=34.34 E-value=1.3e+02 Score=26.38 Aligned_cols=57 Identities=19% Similarity=0.365 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFL 953 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l 953 (961)
.+.++.-|++++..++.++++++..|..- ....+..+.+..+.+.+.+.|+.+|.-|
T Consensus 42 ~E~ei~sL~kKiq~lE~eld~~~e~l~~a-------~~kLe~~ek~~~~AE~evasLnRriqll 98 (101)
T 3u59_A 42 LEEEQQGLQKKLKGTEDEVEKYSESVKEA-------QEKLEQAEKKATDAEAEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666665555544311 1123444555666677777777766544
No 166
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=34.06 E-value=74 Score=20.56 Aligned_cols=20 Identities=30% Similarity=0.410 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002136 934 EKAAEAEEKINLTKNRLAFL 953 (961)
Q Consensus 934 ~kl~~~~~~l~~~~~~l~~l 953 (961)
+|-+.++++++.+++.|+.|
T Consensus 8 kkcaalesklqalekkleal 27 (31)
T 3ljm_A 8 KKCAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555544444
No 167
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=33.35 E-value=1.4e+02 Score=26.73 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=21.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhc
Q 002136 889 DISAEVQRLSKRLSKMQSEYDGLVARLS 916 (961)
Q Consensus 889 d~~~e~~rl~k~~~kl~~~~~~~~~kl~ 916 (961)
.+++|.+.-++++++|+.||..++.+|.
T Consensus 61 SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq 88 (121)
T 3mq7_A 61 SLDAEKAQGQKKVEELEGEITTLNHKLQ 88 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666777778888888888888877543
No 168
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=31.13 E-value=92 Score=28.24 Aligned_cols=19 Identities=26% Similarity=0.525 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 002136 937 AEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 937 ~~~~~~l~~~~~~l~~l~~ 955 (961)
.+++.+++.|++.|.-|++
T Consensus 86 ~dLE~~iesL~eEl~FLKk 104 (119)
T 3ol1_A 86 LDLERKVESLQEEIAFLKK 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566666777666666654
No 169
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=30.32 E-value=1.1e+02 Score=34.46 Aligned_cols=27 Identities=22% Similarity=0.128 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 929 VRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 929 v~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
..+...||++|+.+++++++.|+++++
T Consensus 82 ~AeY~~kl~aYe~~~~~~~k~lae~ek 108 (497)
T 3iox_A 82 LADYPVKLKAYEDEQTSIKAALAELEK 108 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566777899999999999999988776
No 170
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=30.32 E-value=68 Score=34.48 Aligned_cols=23 Identities=13% Similarity=0.106 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 002136 933 QEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 933 ~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
++.++.++++|..++..|.+|.+
T Consensus 32 ~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 32 SEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 171
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis thaliana}
Probab=29.79 E-value=2.1e+02 Score=25.78 Aligned_cols=62 Identities=21% Similarity=0.204 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhcCchhhc-cCCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhh
Q 002136 893 EVQRLSKRLSKMQSEYDGLVARLSSSKFVE-KAPEDVVRGVQEKAAEAEEKINLTK----NRLAFLRST 956 (961)
Q Consensus 893 e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~-kap~~vv~~~~~kl~~~~~~l~~~~----~~l~~l~~~ 956 (961)
-+.||.|+..-+++|++.-+.++. ++.+ .+.+..+.+.++=|.+.+..+--.+ +.++.|+++
T Consensus 16 ~vkRL~KE~~~Y~kE~~~q~~kie--kmk~e~~dey~iKkq~evL~Et~~mipd~~~RL~~a~~~L~~~ 82 (116)
T 3mxz_A 16 TCKRIVKELHSYEKEVEREAAKTA--DMKDKGADPYDLKQQENVLGESRMMIPDCHKRLESALADLKST 82 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 467888888888888887777763 3332 3677778877777777776654443 344444443
No 172
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1
Probab=29.79 E-value=1.2e+02 Score=27.01 Aligned_cols=64 Identities=14% Similarity=0.091 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcCchhhc-cCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhh
Q 002136 892 AEVQRLSKRLSKMQSEYDGLVARLSSSKFVE-KAPEDVVRGVQEKAAEAEEKI----NLTKNRLAFLRSTV 957 (961)
Q Consensus 892 ~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~-kap~~vv~~~~~kl~~~~~~l----~~~~~~l~~l~~~~ 957 (961)
.-+.||-|+..-+++|++.-+.++.+ |.. .+.+..+.+.++=|.+.+..+ .+|++++..|++++
T Consensus 14 ~~vkRL~KE~~~Y~kE~~~q~~riek--~k~e~~Dey~iKkq~evl~Et~~mipd~~~Rl~~a~~~L~~~l 82 (108)
T 1h7c_A 14 GVVRRLVKERVMYEKEAKQQEEKIEK--MRAEDGENYDIKKQAEILQESRMMIPDCQRRLEAAYLDLQRIL 82 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHCSCTHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 34678888888888888888877766 333 355667777777777766544 34445555555543
No 173
>4adz_A CSOR; transcription, copper sensor; 1.70A {Streptomyces lividans}
Probab=29.23 E-value=1.3e+02 Score=27.82 Aligned_cols=31 Identities=16% Similarity=0.308 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcCchhh
Q 002136 891 SAEVQRLSKRLSKMQSEYDGLVARLSSSKFV 921 (961)
Q Consensus 891 ~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~ 921 (961)
.++.+++-++|.+++.++..+++.+.++.|.
T Consensus 48 ~~~Kk~ll~RLkRIeGQvrGI~rMIEedr~C 78 (136)
T 4adz_A 48 HKQKAEHLKRLRRIEGQIRGLQRMVDEDVYC 78 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 4678899999999999999999999999885
No 174
>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A
Probab=28.80 E-value=1.2e+02 Score=28.58 Aligned_cols=30 Identities=10% Similarity=0.130 Sum_probs=16.7
Q ss_pred HHHhcCc-eEEcCeeeecCCCCCcccccccc
Q 002136 215 RLHEKGL-IYQGSYMVNWSPNLQTAVSDLEV 244 (961)
Q Consensus 215 ~L~~~Gl-Iy~~~~~v~w~p~~~t~lsd~Ev 244 (961)
.+..+|- +..--.+-.|||.|..-+....-
T Consensus 28 d~~~~Gk~vvl~f~~~~~cp~C~~e~~~l~~ 58 (164)
T 4gqc_A 28 EVLKRGRPAVLIFFPAAFSPVCTKELCTFRD 58 (164)
T ss_dssp HHHHTSSCEEEEECSCTTCCEECSSCEESCC
T ss_pred HHhcCCCEEEEEEeCCCCCCCcccchhhhhh
Confidence 3344552 22223444689999877665443
No 175
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=28.65 E-value=1.2e+02 Score=27.85 Aligned_cols=59 Identities=14% Similarity=0.172 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 894 VQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAF 952 (961)
Q Consensus 894 ~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~ 952 (961)
+..|+.+..++..+...+...|..+.-.-.--++..+.-..+-.+++.++..++..++.
T Consensus 36 r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rlee 94 (129)
T 2fxo_A 36 RKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLED 94 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555444433322222333333333334444444444444433
No 176
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=28.53 E-value=1.3e+02 Score=27.24 Aligned_cols=61 Identities=15% Similarity=0.108 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLR 954 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~ 954 (961)
-++|+.+|..++.-+|..+++..+.|...+- -..-+.-.-.||.++++.++.-....++|.
T Consensus 58 HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~----qQnQQSlDiRKLrELEADLKEKDsMVe~LT 118 (167)
T 4gkw_A 58 HQKEIGKLRAELGTAQRNLEKADQLLKRNSQ----QQNQQSLDMRKLGELEADLKEKDSMVESLT 118 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHTHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhhhH----HHhHhhhhHHHHHHHHhHHhhhhHHHHHHH
Confidence 3556666666666666666666655543322 122334445566666666555444444443
No 177
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=28.21 E-value=85 Score=22.09 Aligned_cols=24 Identities=21% Similarity=0.219 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 932 VQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 932 ~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
++--|.+.++|+.++++.|+.|++
T Consensus 6 e~mTLeEtkeQi~~l~~kl~~Lke 29 (38)
T 2l5g_A 6 ERMSLEETKEQILKLEEKLLALQE 29 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777777766664
No 178
>3aai_A Copper homeostasis operon regulatory protein; all alpha proteins, 4-helix bundle, transcription; 2.10A {Thermus thermophilus}
Probab=28.09 E-value=1.7e+02 Score=25.35 Aligned_cols=31 Identities=16% Similarity=0.352 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcCch-hh
Q 002136 891 SAEVQRLSKRLSKMQSEYDGLVARLSSSK-FV 921 (961)
Q Consensus 891 ~~e~~rl~k~~~kl~~~~~~~~~kl~n~~-f~ 921 (961)
.++..++-+++.+++.++..+++.+.++. |.
T Consensus 10 ~~~k~~~l~RLkRieGQv~gI~rMiEe~~~~C 41 (94)
T 3aai_A 10 PKVREEARRRLLSAKGHLEGILRMLEDEKVYC 41 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSEECH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcccH
Confidence 45678899999999999999999999998 86
No 179
>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor); four-helix-bundle, chaperone; 2.20A {Saccharomyces cerevisiae} SCOP: a.7.5.1
Probab=27.83 E-value=1.9e+02 Score=25.56 Aligned_cols=64 Identities=14% Similarity=0.128 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcCchhhcc-C-CHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhh
Q 002136 892 AEVQRLSKRLSKMQSEYDGLVARLSSSKFVEK-A-PEDVVRGVQEKAAEAEEKIN----LTKNRLAFLRSTV 957 (961)
Q Consensus 892 ~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~k-a-p~~vv~~~~~kl~~~~~~l~----~~~~~l~~l~~~~ 957 (961)
.-+.||-|+..-+++|++.-+.++.. |.+. + .+..+.+.++=|.+.+..+- +|++.++.|.+++
T Consensus 11 g~vkRL~KE~~~Y~kE~~~q~~riek--~k~~~~~dey~iKkq~evl~Et~~mipd~~~Rl~~a~~~L~~~l 80 (106)
T 1qsd_A 11 KALKRLTKEEGYYQQELKDQEAHVAK--LKEDKSVDPYDLKKQEEVLDDTKRLLPTLYEKIREFKEDLEQFL 80 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34678899999888888888777766 3332 3 67888888888888776654 4444555555543
No 180
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=27.62 E-value=59 Score=21.02 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHh
Q 002136 895 QRLSKRLSKMQSEYDGLVARL 915 (961)
Q Consensus 895 ~rl~k~~~kl~~~~~~~~~kl 915 (961)
+.|+|+-+.++..++.+++||
T Consensus 4 ealekkcaalesklqalekkl 24 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKL 24 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666665554
No 181
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=27.56 E-value=3e+02 Score=23.74 Aligned_cols=66 Identities=14% Similarity=0.241 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCchh-hccCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKF-VEKAPEDVVRGVQEKAA---EAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f-~~kap~~vv~~~~~kl~---~~~~~l~~~~~~l~~l~~ 955 (961)
...-+.+.++++..+.+.|+.+++.|...+- -.-.|.++...-++..+ .+-++++.|.+.++.++.
T Consensus 10 F~~lv~~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke 79 (93)
T 3t98_B 10 FRVLVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKE 79 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999999988653 23357777776666554 445666667777766665
No 182
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=27.56 E-value=51 Score=37.37 Aligned_cols=29 Identities=10% Similarity=0.322 Sum_probs=18.5
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhHhc
Q 002136 888 VDISAEVQRLSKRLSKMQSEYDGLVARLS 916 (961)
Q Consensus 888 id~~~e~~rl~k~~~kl~~~~~~~~~kl~ 916 (961)
+.++++...++.+++.|+.+.+.+.+.+.
T Consensus 34 ~~l~~~~r~~~~~~~~l~~~~n~~sk~i~ 62 (455)
T 2dq0_A 34 LKLDTEWRTKLKEINRLRHERNKIAVEIG 62 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666554
No 183
>2djv_A Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.54 E-value=2.7e+02 Score=23.21 Aligned_cols=52 Identities=17% Similarity=0.220 Sum_probs=41.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 889 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKN 948 (961)
Q Consensus 889 d~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~ 948 (961)
....+++.|..+++.--..+..+.. ++|+..++...=++|..++++++.+..
T Consensus 10 ~~~~~~~~l~~~V~~QG~~VR~LKa--------~kA~k~~i~~aV~~Ll~LKa~l~~~tg 61 (79)
T 2djv_A 10 AKPQQIQALMDEVTKQGNIVRELKA--------QKADKNEVAAEVAKLLDLKKQLAVAEG 61 (79)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH--------TTCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhh--------ccCcHhHhhHHHHHHHHHHHHHHHhcC
Confidence 3566777888888887777777764 689999999999999999988877653
No 184
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=27.49 E-value=1.7e+02 Score=24.42 Aligned_cols=27 Identities=15% Similarity=0.177 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 928 VVRGVQEKAAEAEEKINLTKNRLAFLR 954 (961)
Q Consensus 928 vv~~~~~kl~~~~~~l~~~~~~l~~l~ 954 (961)
-+..-..|+..++.++.+.++.|....
T Consensus 42 ev~~L~kKiq~lE~eld~~ee~l~~a~ 68 (81)
T 1ic2_A 42 ELVALQKKLKGTEDELDKYSESLKDAQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666655443
No 185
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=27.14 E-value=90 Score=33.88 Aligned_cols=26 Identities=4% Similarity=0.029 Sum_probs=12.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 925 PEDVVRGVQEKAAEAEEKINLTKNRL 950 (961)
Q Consensus 925 p~~vv~~~~~kl~~~~~~l~~~~~~l 950 (961)
.++..+..++.+.+++.+++.++..|
T Consensus 67 D~e~~~~a~~e~~~l~~~~~~le~~l 92 (354)
T 3d5a_X 67 DPELKEMAKAEREALLARKEALEKEL 92 (354)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555554443
No 186
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=27.07 E-value=61 Score=23.70 Aligned_cols=26 Identities=15% Similarity=0.289 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHh
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVARL 915 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~kl 915 (961)
++.-++||+..-+.|+|.|+.+++.+
T Consensus 22 lenivarlendnanlekdianlekdi 47 (56)
T 3he4_A 22 LENIVARLENDNANLEKDIANLEKDI 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHH
Confidence 44445555555555555555555443
No 187
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=27.07 E-value=2.6e+02 Score=22.91 Aligned_cols=31 Identities=19% Similarity=0.338 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002136 926 EDVVRGVQEKAAEAEEKINLTKNRLAFLRST 956 (961)
Q Consensus 926 ~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~ 956 (961)
++.++.-...|.+.++++..++..|..|++.
T Consensus 39 d~~I~eLEk~L~ekd~eI~~LqseLDKfrSV 69 (72)
T 3nmd_A 39 DALIDELELELDQKDELIQMLQNELDKYRSV 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4467777788888999999999988888763
No 188
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=26.83 E-value=1.3e+02 Score=34.85 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 928 VVRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 928 vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
..++.++++.+++.+...+.+.++++.+
T Consensus 552 ~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 552 QLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666555555554
No 189
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=26.76 E-value=1.3e+02 Score=30.97 Aligned_cols=29 Identities=10% Similarity=0.268 Sum_probs=22.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcC
Q 002136 889 DISAEVQRLSKRLSKMQSEYDGLVARLSS 917 (961)
Q Consensus 889 d~~~e~~rl~k~~~kl~~~~~~~~~kl~n 917 (961)
|.+.++.+++.+++.+...+++.+++|.+
T Consensus 57 d~~~~~~~~e~~i~~~~~ri~~~~~~l~~ 85 (256)
T 3na7_A 57 ALKLQVSKNEQTLQDTNAKIASIQKKMSE 85 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 57777788888888888888888888754
No 190
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=26.48 E-value=2.1e+02 Score=25.96 Aligned_cols=61 Identities=8% Similarity=0.159 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002136 895 QRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRST 956 (961)
Q Consensus 895 ~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~ 956 (961)
+..+...+++...++++.+ ..+-.|-.+-=..++.+.+.-+.+++.+++.-++.+..|..+
T Consensus 44 a~~~~l~~~i~er~~~i~~-~~~~~~yk~~y~~l~k~Y~~~~keLd~~ik~qekiIdnFE~i 104 (119)
T 3etw_A 44 AQNEQVYNELSQRAQRLQA-EANTRFYKSQYQELASKYEDALKKLEAEMEQQKAVISDFEKI 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HTTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555544 335555455555667777777777777777777777777654
No 191
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=25.91 E-value=1.8e+02 Score=26.54 Aligned_cols=22 Identities=14% Similarity=0.463 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002136 891 SAEVQRLSKRLSKMQSEYDGLV 912 (961)
Q Consensus 891 ~~e~~rl~k~~~kl~~~~~~~~ 912 (961)
..|+..+...+..|+.+++.+.
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~ 56 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVK 56 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 192
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=25.89 E-value=1.8e+02 Score=20.62 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHh
Q 002136 893 EVQRLSKRLSKMQSEYDGLVARL 915 (961)
Q Consensus 893 e~~rl~k~~~kl~~~~~~~~~kl 915 (961)
|++.|+.++..+++.++.+..||
T Consensus 21 elaaleselqalekklaalkskl 43 (48)
T 1g6u_A 21 ELAALESELQALEKKLAALKSKL 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666665555555554
No 193
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=25.69 E-value=2.1e+02 Score=23.86 Aligned_cols=64 Identities=20% Similarity=0.256 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 891 SAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKA-PEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 891 ~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~ka-p~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
++...|+..++...+.|++.+.+. .++=.-.+. =+++++.-+..-++++..++.+++..++|.+
T Consensus 10 DKLRrrl~E~~~q~qaEl~sLrrT-~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 10 DKLRWRMKEEMDRAQAELNALKRT-EEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777788888887777542 111111110 1233444444445555555555555555554
No 194
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=25.57 E-value=1.1e+02 Score=28.91 Aligned_cols=58 Identities=14% Similarity=0.145 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 891 SAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 891 ~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
.+.+..|++++..++.++..++.-+. .-...++.-+..+..++.++..+++++..+++
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~-------eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~ 124 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIA-------LKNKNTERLNAALISGTIENNVLQQKLSDLKK 124 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666654332 33345666677777777777777777777765
No 195
>2hh7_A Hypothetical protein CSOR; 4-helix bundle, unknown function; 2.55A {Mycobacterium tuberculosis}
Probab=24.93 E-value=1.7e+02 Score=26.53 Aligned_cols=30 Identities=27% Similarity=0.444 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcCchhh
Q 002136 892 AEVQRLSKRLSKMQSEYDGLVARLSSSKFV 921 (961)
Q Consensus 892 ~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~ 921 (961)
.+..++-++|.+++.++..+++.+.++.|.
T Consensus 7 ~~kk~ll~RLkRIeGQvrGI~rMIEedr~C 36 (119)
T 2hh7_A 7 AKKRAALNRLKTVRGHLDGIVRMLESDAYC 36 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Confidence 467789999999999999999999999997
No 196
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=24.92 E-value=1e+02 Score=22.46 Aligned_cols=25 Identities=12% Similarity=0.308 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhH
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVAR 914 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~k 914 (961)
++..-+.|+|.++.|+|.|+.+++.
T Consensus 29 lendnanlekdianlekdianlerd 53 (56)
T 3he4_A 29 LENDNANLEKDIANLEKDIANLERD 53 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccchHHHHHHHHHHHHHHHHHh
Confidence 4444566666666666666666553
No 197
>3etv_A Protein transport protein TIP20,linker,protein transport protein DSL1; TIP20P-DSL1P complex, endoplasmic reticulum, ER-golgi transport; 1.94A {Saccharomyces cerevisiae} PDB: 3etu_A
Probab=24.71 E-value=45 Score=35.79 Aligned_cols=32 Identities=16% Similarity=0.432 Sum_probs=23.0
Q ss_pred CCCccChHHHHHHHHHHHHHHHHHHHHHHhHh
Q 002136 884 LADMVDISAEVQRLSKRLSKMQSEYDGLVARL 915 (961)
Q Consensus 884 l~~~id~~~e~~rl~k~~~kl~~~~~~~~~kl 915 (961)
+.++.+++..|+.+++++..|+.+++.+++..
T Consensus 8 i~DLl~id~~I~~i~~eRd~La~~lq~~~~~~ 39 (355)
T 3etv_A 8 IDDLLNINDRIKQVQNERNELASKLQNLKQSL 39 (355)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34567999999999999999999999988655
No 198
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=24.64 E-value=1e+02 Score=23.07 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcCc
Q 002136 892 AEVQRLSKRLSKMQSEYDGLVARLSSS 918 (961)
Q Consensus 892 ~e~~rl~k~~~kl~~~~~~~~~kl~n~ 918 (961)
.||-||+++++.|++..+.-..-|...
T Consensus 6 EEILRLErEIE~Lqrqke~~~~~L~e~ 32 (51)
T 2lw9_A 6 EEILRLEKEIEDLQRMKEQQELSLTEA 32 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 478899999999998888777766554
No 199
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=24.30 E-value=2.5e+02 Score=26.49 Aligned_cols=63 Identities=19% Similarity=0.247 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCC--H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002136 891 SAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAP--E-------DVVRGVQEKAAEAEEKINLTKNRLAFLRST 956 (961)
Q Consensus 891 ~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap--~-------~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~ 956 (961)
...+..++.++..|+.+..++.+... ..+-.| + .++.....+.++..++...+...++.+..|
T Consensus 35 ~~~i~q~d~elqQLefq~kr~~~e~~---~q~~~~~~p~~~~qi~~iq~q~~~ek~~r~e~k~~l~~ql~qv~~L 106 (150)
T 4dci_A 35 SNGIANADQQLAQLEQEGQTVVDQVR---RQSANPLDPRVQEQVANIQQQVAGKRSELEEQKRNLLQQQAQVREL 106 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---hccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33345555555555555555443332 211112 2 455666666777777777777777777665
No 200
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=24.09 E-value=1.1e+02 Score=32.47 Aligned_cols=54 Identities=11% Similarity=0.136 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTV 957 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~ 957 (961)
+++|.+.++++.++++.+....+++- ...-.|+++-+-+-.+|+..+.+++..|
T Consensus 8 ~~~e~~~~~~~~~~vq~kA~~~E~~Y--------------n~~~dKmeqE~lrRRkLENSIdElKG~I 61 (333)
T 4etp_B 8 LEKEIAALEKEIAALEKEISKQEKFY--------------NDTYNTVCKELLRSRRLENSIIEQKGTM 61 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHhhhHHHhcCcE
Confidence 45555555555555555555554433 2344667777777788889999988754
No 201
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=23.97 E-value=2.7e+02 Score=22.90 Aligned_cols=49 Identities=10% Similarity=0.324 Sum_probs=31.5
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHH
Q 002136 887 MVDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINL 945 (961)
Q Consensus 887 ~id~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~ 945 (961)
..|++.-+.||+.-++.||...+++.+... ..+.+-++++..++.++..
T Consensus 2 ~~dlEEKv~~LE~sld~LQTrfARLLaEy~----------ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 2 AMGLEEKVTRMESSVDLLQTRFARILAEYE----------SMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhcc
Confidence 357777788888888888888877766432 2445555666666665554
No 202
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=23.93 E-value=1.5e+02 Score=31.85 Aligned_cols=47 Identities=15% Similarity=0.082 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRL 950 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l 950 (961)
+..|+.++++.+...+.+|..|+.+| +..++|+.+++.++..++..+
T Consensus 10 ~~~~~~~~e~~i~~~~~~i~~L~~~l--------------~~~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 10 ILEEVRILEQIGVSHDAQIQELSEMW--------------RVNQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
Confidence 44567777777777777777777644 455677888888887777654
No 203
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=23.93 E-value=1.2e+02 Score=20.04 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVA 913 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~ 913 (961)
++.++.+|+.-..+||+.+++++.
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666654
No 204
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=23.86 E-value=1e+02 Score=19.28 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHhHhc
Q 002136 897 LSKRLSKMQSEYDGLVARLS 916 (961)
Q Consensus 897 l~k~~~kl~~~~~~~~~kl~ 916 (961)
|-|+++.+|..+.++.+||.
T Consensus 6 lykeledlqerlrklrkklr 25 (27)
T 3twe_A 6 LYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 44555555555555555553
No 205
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=23.83 E-value=1.1e+02 Score=23.63 Aligned_cols=31 Identities=16% Similarity=0.124 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002136 927 DVVRGVQEKAAEAEEKINLTKNRLAFLRSTV 957 (961)
Q Consensus 927 ~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~ 957 (961)
.=++.-+...++++.+++.+++.++++++-+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677777777777777777766543
No 206
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=23.68 E-value=1e+02 Score=23.70 Aligned_cols=28 Identities=18% Similarity=0.348 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcC
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVARLSS 917 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~kl~n 917 (961)
+..|.+.|+.+++.|.++++.+.++|..
T Consensus 24 Lk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 24 LRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5556777888888888888888877764
No 207
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=23.64 E-value=87 Score=29.25 Aligned_cols=35 Identities=14% Similarity=0.210 Sum_probs=25.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002136 923 KAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTV 957 (961)
Q Consensus 923 kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~ 957 (961)
..++++.+.-++++++++++++.+++.++.|..++
T Consensus 77 ~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i 111 (142)
T 3gp4_A 77 HTLEARAELLKKQRIELKNRIDVMQEALDRLDFKI 111 (142)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777888888888888888777777654
No 208
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=23.62 E-value=1.1e+02 Score=29.11 Aligned_cols=59 Identities=22% Similarity=0.259 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 896 RLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLR 954 (961)
Q Consensus 896 rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~ 954 (961)
-.+..+.+|+++|++++..|....=..++-.+-.+..-..|..+.+.+-.+++.++.|+
T Consensus 95 ~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~~ 153 (155)
T 2efr_A 95 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARLK 153 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 34556667777777777766654332222222233333333333444444444444444
No 209
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=23.55 E-value=1.4e+02 Score=25.43 Aligned_cols=66 Identities=14% Similarity=0.277 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVV-------RGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv-------~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
...+.++++-++..++..++..+.|..++--.-..-+.-+ +..--.-.+++.+++.+++.|+-|+.
T Consensus 12 l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLkk 84 (86)
T 3swk_A 12 LTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKK 84 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455566666666666666666666655433222222111 11122225677777777777776664
No 210
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=23.41 E-value=2.1e+02 Score=24.50 Aligned_cols=60 Identities=17% Similarity=0.213 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhcc
Q 002136 893 EVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAE-------AEEKINLTKNRLAFLRSTVMV 959 (961)
Q Consensus 893 e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~-------~~~~l~~~~~~l~~l~~~~~~ 959 (961)
-+.+..+.++..-..+++-..+|++-.= -+.+..+.+.+ +-++.--+++.++.++.++-+
T Consensus 42 aI~~NS~aiaanTr~lQqh~aRlnsqQr-------QI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kkl~~~ 108 (114)
T 2xzr_A 42 SIEKNSKAIAANTRTLQQHSARLDSQQR-------QINENHKEMKQIEDKIEEILSKIYHIENEIARIKKLIKL 108 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhchHHHHHhHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4566666666666666666666665432 33344444433 334444466777777776643
No 211
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=23.12 E-value=2.8e+02 Score=24.42 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=29.1
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 920 FVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 920 f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
|+..--+++++.-.++.+.++.+++.+++.+..+..
T Consensus 63 fv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~ 98 (117)
T 2zqm_A 63 IVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNE 98 (117)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888888888888888888877776655
No 212
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=23.02 E-value=1.4e+02 Score=19.88 Aligned_cols=29 Identities=24% Similarity=0.437 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002136 929 VRGVQEKAAEAEEKINLTKNRLAFLRSTV 957 (961)
Q Consensus 929 v~~~~~kl~~~~~~l~~~~~~l~~l~~~~ 957 (961)
+...++..+..++++..+++.++.++-++
T Consensus 4 iaaikeeqaaieeeiqaikeeiaaikyli 32 (36)
T 1bb1_B 4 IAAIKEEQAAIEEEIQAIKEEIAAIKYLI 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777778888888777776554
No 213
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=22.57 E-value=2e+02 Score=24.98 Aligned_cols=18 Identities=28% Similarity=0.582 Sum_probs=7.7
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 002136 890 ISAEVQRLSKRLSKMQSE 907 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~ 907 (961)
++.|+++|++++..|+.-
T Consensus 52 L~~EI~~L~~eI~~LE~i 69 (96)
T 1t3j_A 52 LEEEIARLSKEIDQLEKM 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 214
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=22.49 E-value=3.1e+02 Score=24.76 Aligned_cols=55 Identities=9% Similarity=0.188 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002136 901 LSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRST 956 (961)
Q Consensus 901 ~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~ 956 (961)
-+.+...++++.. .++-.|-..-=..++.+.+.-+.+++.+++.-++.|.+|..+
T Consensus 50 ~~~i~ek~~~i~~-~~~~~~yK~eY~~L~KkYk~~~~~Ld~eI~~qe~iI~nFe~I 104 (119)
T 2avr_X 50 YNELSQRAQRLQA-EANTRFYKSQYQELASKYEDALKKLEAEMEQQKAVISDFEKI 104 (119)
T ss_dssp HHHHHHHHHHHHH-HTTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555554 555666555556677777777777777777777777777653
No 215
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1
Probab=22.44 E-value=2.3e+02 Score=28.57 Aligned_cols=52 Identities=10% Similarity=0.068 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhh
Q 002136 903 KMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKI-----NLTKNRLAFLRST 956 (961)
Q Consensus 903 kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l-----~~~~~~l~~l~~~ 956 (961)
.++.-+-.++++|.. +..+.+++-.++.+++++++++-| +.+++++++|+++
T Consensus 147 ~le~~i~~~~~~l~~--~~~~~~~~~k~~i~~~l~~~~~wl~~~d~~~~~~~~~~L~~~ 203 (227)
T 1u00_A 147 EAARVLESLHGALAA--DAALLSAAERQVIDDAAAHLSEVAQGDDVDAIEQAIKNVDKQ 203 (227)
T ss_dssp HHHHHHHHHHHHHHH--HGGGSCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh--hhccCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 345556667777754 667889988888888888777433 4566666666653
No 216
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=22.39 E-value=60 Score=36.98 Aligned_cols=28 Identities=11% Similarity=0.148 Sum_probs=16.2
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhHh
Q 002136 888 VDISAEVQRLSKRLSKMQSEYDGLVARL 915 (961)
Q Consensus 888 id~~~e~~rl~k~~~kl~~~~~~~~~kl 915 (961)
+.++++...++.+++.|+.+.+.+.+.+
T Consensus 36 ~~ld~~~r~~~~~~~~l~~~rn~~sk~i 63 (485)
T 3qne_A 36 IAEYKEWVKLRFDLDEHNKKLNSVQKEI 63 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666665555544
No 217
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=22.33 E-value=2.5e+02 Score=24.41 Aligned_cols=50 Identities=18% Similarity=0.150 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 897 LSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAF 952 (961)
Q Consensus 897 l~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~ 952 (961)
.++++.+++++++.|..-|= +-|..=|. ..+..-+.++.+...|+++|.+
T Consensus 45 aE~~~~~ie~ElEeLTasLF-----eEAN~MVa-~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 45 AEEEADKLNKEVEDLTASLF-----DEANNMVA-DARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHhh
Confidence 34677777777777766553 33444343 3455666777777777777765
No 218
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=22.21 E-value=2.7e+02 Score=28.46 Aligned_cols=55 Identities=11% Similarity=0.105 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 897 LSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 897 l~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
.+.+++..++++++.+ +|.+.++ ++..-.+..+..+...+++++..+..|+..+.
T Consensus 72 a~a~l~~a~~~~~r~~-~L~~~g~---~s~~~~~~a~~~~~~a~a~l~~a~a~l~~a~~ 126 (277)
T 2f1m_A 72 AQAAANIAQLTVNRYQ-KLLGTQY---ISKQEYDQALADAQQANAAVTAAKAAVETARI 126 (277)
T ss_dssp HHHHHHHHHHHHHHHH-TTTTSTT---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHcCC---cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444443 3344444 46677777788888888888888877766654
No 219
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=22.11 E-value=1.1e+02 Score=28.27 Aligned_cols=58 Identities=17% Similarity=0.084 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002136 900 RLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTV 957 (961)
Q Consensus 900 ~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~ 957 (961)
.+..+--.++.+...|....--....+++.+.-++++++++++++.+++.++.|..++
T Consensus 52 ~lr~~G~sl~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (135)
T 1q06_A 52 QARQVGFNLEESGELVNLFNDPQRHSADVKRRTLEKVAEIERHIEELQSMRDQLLALA 109 (135)
T ss_dssp HHHHTTCCHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444321111123467788888999999999999999888888765
No 220
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=21.53 E-value=4.3e+02 Score=23.59 Aligned_cols=56 Identities=9% Similarity=0.087 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 955 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 955 (961)
+..+...+.+++.++.++...++..++ ...+.-+.+++.+..++..-+..|.+|++
T Consensus 11 lq~~~~ql~~qL~k~~~~r~~Le~~w~----------~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq 66 (112)
T 1x79_B 11 LQLMLRQANDQLEKTMKDKQELEDFIK----------QSSEDSSHQISALVLRAQASEILLEELQQ 66 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777777777777766532 34455555666666666666666655554
No 221
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=21.05 E-value=2.3e+02 Score=24.45 Aligned_cols=66 Identities=11% Similarity=0.143 Sum_probs=49.8
Q ss_pred CCccChHHHHHHHHHHHHHHHHHHHHHHhHh-cCchhhcc----CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 885 ADMVDISAEVQRLSKRLSKMQSEYDGLVARL-SSSKFVEK----APEDVVRGVQEKAAEAEEKINLTKNRL 950 (961)
Q Consensus 885 ~~~id~~~e~~rl~k~~~kl~~~~~~~~~kl-~n~~f~~k----ap~~vv~~~~~kl~~~~~~l~~~~~~l 950 (961)
+.+-++++|+...+.+|.-..+.+...+... .||+=++| +-..+|...+.|+++++.+++.....-
T Consensus 5 ~~i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd~v~~~ 75 (96)
T 2ic9_A 5 STLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIAAQ 75 (96)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445788999999999988777776665544 35666665 457789999999999999998776643
No 222
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=20.98 E-value=61 Score=26.06 Aligned_cols=25 Identities=16% Similarity=0.381 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHhcCch
Q 002136 895 QRLSKRLSKMQSEYDGLVARLSSSK 919 (961)
Q Consensus 895 ~rl~k~~~kl~~~~~~~~~kl~n~~ 919 (961)
+||..+++|+-.+++++.+.|+.++
T Consensus 35 aKL~Rk~DKl~~ele~l~~~l~~~~ 59 (65)
T 3sja_C 35 TKNNRKLDSLDKEINNLKDEIQSEN 59 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccc
No 223
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=20.97 E-value=1.8e+02 Score=28.20 Aligned_cols=67 Identities=9% Similarity=0.131 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCchh-hccCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002136 890 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKF-VEKAPEDVV-RGVQEKAAEAEEKINLTKNRLAFLRSTV 957 (961)
Q Consensus 890 ~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f-~~kap~~vv-~~~~~kl~~~~~~l~~~~~~l~~l~~~~ 957 (961)
++.++.+|+++-.++..+|.+..++ .|..- .-.|-.-|. .+...+|-...+++..+.-.+.+...+.
T Consensus 26 Ldr~~~kle~~ekk~~~~Ikka~k~-g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l~~v~~~lqt~~~~~ 94 (179)
T 2gd5_A 26 VDRQIRDIQREEEKVKRSVKDAAKK-GQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVL 94 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555444332 12111 111222221 3456677777888888888887776643
No 224
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=20.81 E-value=2.1e+02 Score=23.82 Aligned_cols=63 Identities=11% Similarity=0.155 Sum_probs=47.0
Q ss_pred CccChHHHHHHHHHHHHHHHHHHHHHHhHh-cCchhhccC----CHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 886 DMVDISAEVQRLSKRLSKMQSEYDGLVARL-SSSKFVEKA----PEDVVRGVQEKAAEAEEKINLTKN 948 (961)
Q Consensus 886 ~~id~~~e~~rl~k~~~kl~~~~~~~~~kl-~n~~f~~ka----p~~vv~~~~~kl~~~~~~l~~~~~ 948 (961)
.+-++++|+...+.+|.-..+.+...+... .||+=++|. -..+|...+.|+++++.+++....
T Consensus 6 ~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd~va 73 (78)
T 2ic6_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIA 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344688899999999887777776665544 356666654 567889999999999999876654
No 225
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=20.45 E-value=1.1e+02 Score=31.53 Aligned_cols=55 Identities=13% Similarity=0.106 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002136 897 LSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTV 957 (961)
Q Consensus 897 l~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~ 957 (961)
..+.+..+--.++.+...|++. ++++.+.-++++++++++++.+++.++.|+.++
T Consensus 55 ~i~~l~~~g~~l~~i~~~~~~~------~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (278)
T 1r8e_A 55 LIKSLKYIGTPLEEMKKAQDLE------MEELFAFYTEQERQIREKLDFLSALEQTISLVK 109 (278)
T ss_dssp HHHHHHHTTCCHHHHHHHTTSC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHhC------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566677777777654 567788888888888888888888888777643
No 226
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=20.25 E-value=3.9e+02 Score=24.67 Aligned_cols=60 Identities=13% Similarity=0.283 Sum_probs=28.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCchhhccCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhh
Q 002136 889 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKA-AEAEEKINLTKNRLAFLRST 956 (961)
Q Consensus 889 d~~~e~~rl~k~~~kl~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl-~~~~~~l~~~~~~l~~l~~~ 956 (961)
|+++-+..+.++++.+.+++..++ .+|++ ++.+...-.++ .....--+.+.+.|+.|.++
T Consensus 25 dveksv~~~~k~l~~l~~el~~ie-----kGFL~---k~l~~ea~~kl~Krik~~~E~~Mk~LE~LDs~ 85 (135)
T 1i6z_A 25 DLEVSAEKIANHLQELNKELSGIQ-----QGFLA---KELQAEALCKLDRKVKATIEQFMKILEEIDTM 85 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----TSSSC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----hcchh---hhhhhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 334444444445555555555554 48875 34443333333 22333334445556666554
No 227
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=20.16 E-value=3.2e+02 Score=24.59 Aligned_cols=25 Identities=8% Similarity=0.272 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHh
Q 002136 891 SAEVQRLSKRLSKMQSEYDGLVARL 915 (961)
Q Consensus 891 ~~e~~rl~k~~~kl~~~~~~~~~kl 915 (961)
++++..|.+++..+..+-.++.-.+
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~lel 43 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVER 43 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333
No 228
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=20.03 E-value=2.6e+02 Score=24.85 Aligned_cols=65 Identities=14% Similarity=0.123 Sum_probs=47.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHh-cCchhhcc----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002136 889 DISAEVQRLSKRLSKMQSEYDGLVARL-SSSKFVEK----APEDVVRGVQEKAAEAEEKINLTKNRLAFL 953 (961)
Q Consensus 889 d~~~e~~rl~k~~~kl~~~~~~~~~kl-~n~~f~~k----ap~~vv~~~~~kl~~~~~~l~~~~~~l~~l 953 (961)
++++|+...|++|.-..+.+...++.. .||+=++| +-..+|...+.|+++++.+++......+..
T Consensus 26 eLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~va~~k~~ 95 (113)
T 4fi5_A 26 ELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLADRIATGKNL 95 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 678889999999988777777665544 35666665 457799999999999999998776654433
Done!