Query 002138
Match_columns 960
No_of_seqs 476 out of 2055
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 17:22:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002138.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002138hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5560 UBP12 Ubiquitin C-term 100.0 2E-121 5E-126 1013.8 40.3 753 93-957 43-823 (823)
2 KOG1870 Ubiquitin C-terminal h 100.0 2.8E-99 6E-104 929.0 40.1 808 92-957 9-842 (842)
3 COG5533 UBP5 Ubiquitin C-termi 100.0 6.7E-64 1.5E-68 516.5 21.8 334 336-956 68-414 (415)
4 KOG1865 Ubiquitin carboxyl-ter 100.0 6.3E-63 1.4E-67 551.5 22.7 306 335-956 104-410 (545)
5 cd02663 Peptidase_C19G A subfa 100.0 7.5E-62 1.6E-66 540.3 26.3 287 341-954 1-300 (300)
6 cd02668 Peptidase_C19L A subfa 100.0 3.4E-59 7.4E-64 524.6 29.7 295 341-954 1-324 (324)
7 cd02660 Peptidase_C19D A subfa 100.0 4.8E-59 1E-63 524.6 30.3 318 340-954 1-328 (328)
8 cd02671 Peptidase_C19O A subfa 100.0 2.4E-58 5.2E-63 516.0 30.5 299 333-954 18-332 (332)
9 cd02667 Peptidase_C19K A subfa 100.0 6.1E-59 1.3E-63 511.5 25.0 273 341-954 1-279 (279)
10 cd02669 Peptidase_C19M A subfa 100.0 1.3E-58 2.9E-63 537.8 26.7 306 334-954 114-440 (440)
11 cd02664 Peptidase_C19H A subfa 100.0 3.4E-58 7.3E-63 516.7 25.8 298 341-954 1-327 (327)
12 KOG1868 Ubiquitin C-terminal h 100.0 1.1E-58 2.3E-63 541.7 17.5 344 334-959 296-649 (653)
13 cd02657 Peptidase_C19A A subfa 100.0 9E-57 1.9E-61 501.1 27.7 288 341-954 1-305 (305)
14 cd02658 Peptidase_C19B A subfa 100.0 2.3E-56 5E-61 499.1 30.1 293 341-954 1-311 (311)
15 cd02661 Peptidase_C19E A subfa 100.0 9.6E-56 2.1E-60 491.8 28.2 302 339-953 1-303 (304)
16 cd02659 peptidase_C19C A subfa 100.0 1.5E-55 3.2E-60 497.5 28.7 300 338-958 1-334 (334)
17 cd02662 Peptidase_C19F A subfa 100.0 1.1E-50 2.3E-55 436.2 23.0 143 788-954 96-240 (240)
18 KOG1873 Ubiquitin-specific pro 100.0 4.4E-51 9.5E-56 462.5 11.2 169 786-956 676-877 (877)
19 cd02674 Peptidase_C19R A subfa 100.0 4.1E-48 8.9E-53 413.5 20.6 147 788-954 84-230 (230)
20 KOG1867 Ubiquitin-specific pro 100.0 1.2E-45 2.7E-50 425.8 17.5 324 334-957 156-485 (492)
21 cd02673 Peptidase_C19Q A subfa 100.0 5.9E-45 1.3E-49 390.4 20.7 130 789-954 111-245 (245)
22 cd02665 Peptidase_C19I A subfa 100.0 1.8E-44 3.8E-49 379.6 17.7 127 789-954 94-228 (228)
23 PF00443 UCH: Ubiquitin carbox 100.0 5.7E-44 1.2E-48 387.1 22.2 148 339-504 1-151 (269)
24 KOG0944 Ubiquitin-specific pro 100.0 3.7E-43 8E-48 395.2 21.3 153 334-520 302-465 (763)
25 cd02666 Peptidase_C19J A subfa 100.0 1.6E-43 3.4E-48 395.9 14.5 159 339-521 1-178 (343)
26 KOG1866 Ubiquitin carboxyl-ter 100.0 4E-44 8.7E-49 404.4 4.5 309 334-959 90-437 (944)
27 COG5077 Ubiquitin carboxyl-ter 100.0 1.4E-41 3.1E-46 383.5 7.3 299 334-958 188-513 (1089)
28 cd02257 Peptidase_C19 Peptidas 100.0 1.5E-39 3.2E-44 347.8 22.1 143 788-954 99-255 (255)
29 cd02672 Peptidase_C19P A subfa 100.0 1.4E-39 3E-44 353.4 14.8 140 788-954 117-268 (268)
30 KOG4598 Putative ubiquitin-spe 100.0 3.1E-40 6.7E-45 368.2 1.7 150 789-959 215-444 (1203)
31 COG5207 UBP14 Isopeptidase T [ 100.0 3.2E-36 6.9E-41 328.0 17.9 144 339-515 303-451 (749)
32 KOG1863 Ubiquitin carboxyl-ter 100.0 4.5E-35 9.8E-40 369.5 13.6 300 336-958 166-487 (1093)
33 cd02670 Peptidase_C19N A subfa 100.0 3.2E-34 6.9E-39 304.4 16.3 135 787-954 79-241 (241)
34 KOG1864 Ubiquitin-specific pro 100.0 3.3E-33 7.2E-38 327.3 14.6 330 335-955 228-571 (587)
35 KOG1872 Ubiquitin-specific pro 100.0 4.3E-31 9.3E-36 290.6 11.4 244 208-518 12-264 (473)
36 PF13423 UCH_1: Ubiquitin carb 100.0 1.1E-28 2.3E-33 273.9 23.5 287 340-935 1-295 (295)
37 KOG1871 Ubiquitin-specific pro 100.0 1.6E-29 3.4E-34 271.2 12.4 123 814-957 287-420 (420)
38 KOG2026 Spindle pole body prot 99.9 1.2E-26 2.6E-31 247.7 14.8 305 333-956 128-441 (442)
39 PF06337 DUSP: DUSP domain; I 99.7 4.1E-18 8.9E-23 157.7 7.3 81 94-180 1-93 (99)
40 smart00695 DUSP Domain in ubiq 99.7 1.4E-16 3.1E-21 143.4 8.8 77 92-180 2-79 (86)
41 PF14836 Ubiquitin_3: Ubiquiti 99.5 1.8E-14 3.9E-19 126.6 8.6 83 200-283 2-88 (88)
42 KOG1275 PAB-dependent poly(A) 99.4 3E-12 6.5E-17 150.0 12.5 132 809-953 702-860 (1118)
43 PF14533 USP7_C2: Ubiquitin-sp 98.1 1.8E-05 3.9E-10 83.6 10.7 143 510-664 2-156 (213)
44 KOG1864 Ubiquitin-specific pro 96.8 0.0021 4.6E-08 77.2 6.6 104 342-446 34-152 (587)
45 cd01796 DDI1_N DNA damage indu 96.7 0.0052 1.1E-07 53.1 6.9 62 207-273 8-69 (71)
46 PTZ00044 ubiquitin; Provisiona 96.3 0.017 3.7E-07 50.4 8.0 66 206-277 8-73 (76)
47 cd01807 GDX_N ubiquitin-like d 96.3 0.018 3.8E-07 50.2 7.6 65 206-276 8-72 (74)
48 PF14560 Ubiquitin_2: Ubiquiti 96.2 0.033 7.2E-07 50.1 9.2 66 209-274 14-81 (87)
49 cd01813 UBP_N UBP ubiquitin pr 96.1 0.017 3.8E-07 50.3 6.8 64 207-273 8-71 (74)
50 cd01812 BAG1_N Ubiquitin-like 96.1 0.019 4.1E-07 49.3 6.8 62 207-274 8-69 (71)
51 cd01799 Hoil1_N Ubiquitin-like 95.9 0.024 5.3E-07 49.6 6.9 60 208-273 12-72 (75)
52 cd01795 USP48_C USP ubiquitin- 95.8 0.022 4.8E-07 51.4 5.9 61 210-275 16-76 (107)
53 cd01810 ISG15_repeat2 ISG15 ub 95.7 0.047 1E-06 47.5 7.9 66 205-276 5-70 (74)
54 cd01806 Nedd8 Nebb8-like ubiq 95.7 0.053 1.1E-06 47.1 8.2 65 206-276 8-72 (76)
55 PF00240 ubiquitin: Ubiquitin 95.6 0.052 1.1E-06 46.3 7.7 64 207-276 4-67 (69)
56 cd01803 Ubiquitin Ubiquitin. U 95.6 0.053 1.2E-06 47.1 7.9 66 206-277 8-73 (76)
57 PF15499 Peptidase_C98: Ubiqui 95.6 0.0093 2E-07 62.9 3.4 81 810-934 172-252 (275)
58 cd01794 DC_UbP_C dendritic cel 95.6 0.04 8.7E-07 47.5 6.7 62 206-273 6-67 (70)
59 cd01798 parkin_N amino-termina 95.4 0.062 1.3E-06 46.2 7.3 62 206-273 6-67 (70)
60 cd01800 SF3a120_C Ubiquitin-li 95.2 0.062 1.3E-06 47.1 6.9 64 208-277 7-70 (76)
61 cd01809 Scythe_N Ubiquitin-lik 95.2 0.077 1.7E-06 45.5 7.3 62 206-273 8-69 (72)
62 cd01793 Fubi Fubi ubiquitin-li 95.1 0.072 1.6E-06 46.4 7.0 62 209-276 9-70 (74)
63 cd01805 RAD23_N Ubiquitin-like 95.1 0.11 2.3E-06 45.4 8.1 64 207-276 9-74 (77)
64 cd01802 AN1_N ubiquitin-like d 95.0 0.14 3.1E-06 47.7 9.0 65 207-277 36-100 (103)
65 cd01804 midnolin_N Ubiquitin-l 95.0 0.12 2.5E-06 45.6 8.0 69 198-274 2-70 (78)
66 cd01797 NIRF_N amino-terminal 94.9 0.1 2.2E-06 46.0 7.3 61 211-277 14-75 (78)
67 cd01789 Alp11_N Ubiquitin-like 94.7 0.22 4.8E-06 44.5 9.1 67 208-274 12-79 (84)
68 cd01792 ISG15_repeat1 ISG15 ub 94.6 0.12 2.5E-06 45.8 7.1 67 206-276 10-76 (80)
69 cd01808 hPLIC_N Ubiquitin-like 94.4 0.16 3.5E-06 43.7 7.3 58 211-274 12-69 (71)
70 cd01791 Ubl5 UBL5 ubiquitin-li 94.3 0.23 5E-06 43.2 7.9 61 207-273 10-70 (73)
71 cd01763 Sumo Small ubiquitin-r 94.2 0.33 7.2E-06 43.7 9.2 65 206-276 19-83 (87)
72 PF11543 UN_NPL4: Nuclear pore 93.4 0.25 5.4E-06 43.8 6.6 64 208-273 13-77 (80)
73 cd01769 UBL Ubiquitin-like dom 93.0 0.4 8.6E-06 40.4 7.2 61 207-273 6-66 (69)
74 PF00789 UBX: UBX domain; Int 92.9 0.67 1.5E-05 41.0 8.7 67 205-274 13-81 (82)
75 smart00213 UBQ Ubiquitin homol 92.3 0.39 8.5E-06 39.8 6.1 54 209-268 10-63 (64)
76 PF11976 Rad60-SLD: Ubiquitin- 91.1 0.89 1.9E-05 39.1 7.2 62 206-273 8-70 (72)
77 smart00166 UBX Domain present 90.5 1.3 2.8E-05 39.1 7.8 67 205-274 11-79 (80)
78 TIGR00601 rad23 UV excision re 88.0 1.2 2.6E-05 51.1 7.2 65 206-276 8-75 (378)
79 cd01788 ElonginB Ubiquitin-lik 87.3 2.4 5.2E-05 39.7 7.2 71 206-282 9-87 (119)
80 cd01774 Faf1_like2_UBX Faf1 ik 87.2 3.6 7.9E-05 36.9 8.3 69 205-274 11-83 (85)
81 cd01771 Faf1_UBX Faf1 UBX doma 87.2 3 6.5E-05 37.0 7.7 70 205-276 11-80 (80)
82 cd01773 Faf1_like1_UBX Faf1 ik 85.3 6.2 0.00013 35.1 8.6 70 205-276 12-81 (82)
83 cd01767 UBX UBX (ubiquitin reg 85.1 5.7 0.00012 34.7 8.4 65 205-274 9-75 (77)
84 cd01770 p47_UBX p47-like ubiqu 82.0 6.2 0.00013 34.9 7.3 61 205-268 11-72 (79)
85 cd01790 Herp_N Homocysteine-re 79.1 8.4 0.00018 34.1 7.1 67 198-271 2-74 (79)
86 PF02196 RBD: Raf-like Ras-bin 78.4 15 0.00033 31.7 8.4 65 205-276 7-71 (71)
87 cd01772 SAKS1_UBX SAKS1-like U 77.9 11 0.00024 33.2 7.6 66 205-274 11-78 (79)
88 PF05408 Peptidase_C28: Foot-a 77.1 1.2 2.7E-05 45.0 1.5 25 336-360 30-54 (193)
89 PLN02560 enoyl-CoA reductase 74.6 9.9 0.00022 42.6 7.9 61 212-273 17-80 (308)
90 cd01815 BMSC_UbP_N Ubiquitin-l 74.0 5.8 0.00013 34.7 4.6 51 217-273 19-72 (75)
91 PF05408 Peptidase_C28: Foot-a 73.5 3.4 7.3E-05 42.0 3.4 35 885-941 129-165 (193)
92 cd01817 RGS12_RBD Ubiquitin do 70.6 25 0.00053 30.6 7.5 65 205-276 6-70 (73)
93 KOG0010 Ubiquitin-like protein 70.3 11 0.00023 44.2 6.9 62 209-276 25-86 (493)
94 COG3478 Predicted nucleic-acid 70.0 4 8.6E-05 34.1 2.5 36 807-842 3-40 (68)
95 KOG4495 RNA polymerase II tran 69.1 8.2 0.00018 34.9 4.4 57 206-266 9-65 (110)
96 cd00196 UBQ Ubiquitin-like pro 67.0 17 0.00037 28.4 6.0 61 207-273 6-66 (69)
97 cd01760 RBD Ubiquitin-like dom 65.5 26 0.00055 30.5 6.7 66 205-275 6-71 (72)
98 PF11470 TUG-UBL1: GLUT4 regul 63.5 19 0.00042 30.6 5.5 38 205-242 3-40 (65)
99 cd01801 Tsc13_N Ubiquitin-like 63.3 18 0.00039 31.6 5.6 54 216-273 20-74 (77)
100 smart00455 RBD Raf-like Ras-bi 63.3 31 0.00068 29.7 6.9 64 205-275 6-69 (70)
101 PF14560 Ubiquitin_2: Ubiquiti 55.8 68 0.0015 28.6 8.1 64 540-603 14-80 (87)
102 PF08817 YukD: WXG100 protein 52.5 48 0.001 29.0 6.5 71 201-273 4-78 (79)
103 PF01473 CW_binding_1: Putativ 51.8 11 0.00024 23.6 1.6 10 924-933 7-16 (19)
104 cd01787 GRB7_RA RA (RAS-associ 51.4 50 0.0011 29.7 6.2 61 526-590 3-64 (85)
105 KOG0005 Ubiquitin-like protein 50.0 21 0.00046 29.4 3.4 58 208-271 10-67 (70)
106 cd01768 RA RA (Ras-associating 48.8 78 0.0017 28.0 7.4 51 541-591 14-66 (87)
107 cd06406 PB1_P67 A PB1 domain i 48.5 57 0.0012 29.0 6.1 38 210-247 12-49 (80)
108 cd01777 SNX27_RA Ubiquitin dom 45.5 39 0.00085 30.4 4.7 45 197-242 1-45 (87)
109 PF14533 USP7_C2: Ubiquitin-sp 45.4 72 0.0016 33.8 7.6 63 209-274 34-99 (213)
110 KOG1769 Ubiquitin-like protein 45.0 1.3E+02 0.0028 27.8 7.9 69 198-273 21-89 (99)
111 KOG1870 Ubiquitin C-terminal h 43.2 16 0.00034 46.9 2.6 104 786-895 480-583 (842)
112 PF08715 Viral_protease: Papai 41.3 58 0.0013 36.7 6.4 79 336-443 99-178 (320)
113 PF02017 CIDE-N: CIDE-N domain 40.8 72 0.0016 28.2 5.5 58 218-282 20-77 (78)
114 KOG3751 Growth factor receptor 39.6 27 0.00058 41.1 3.4 75 518-596 181-256 (622)
115 KOG3556 Familial cylindromatos 37.5 9.2 0.0002 44.5 -0.6 37 824-860 516-552 (724)
116 cd01814 NTGP5 Ubiquitin-like N 36.9 79 0.0017 29.9 5.5 54 206-265 12-73 (113)
117 PF13881 Rad60-SLD_2: Ubiquiti 35.9 2.7E+02 0.0059 26.3 9.1 67 198-270 3-76 (111)
118 PF00788 RA: Ras association ( 35.3 1.7E+02 0.0037 25.8 7.5 44 199-242 4-52 (93)
119 cd06535 CIDE_N_CAD CIDE_N doma 35.2 82 0.0018 27.8 4.9 58 217-282 19-76 (77)
120 cd01791 Ubl5 UBL5 ubiquitin-li 35.1 1.6E+02 0.0034 25.5 6.8 67 527-604 3-71 (73)
121 smart00666 PB1 PB1 domain. Pho 34.4 1.4E+02 0.0031 25.8 6.7 38 207-244 9-46 (81)
122 KOG1871 Ubiquitin-specific pro 33.2 22 0.00048 40.4 1.5 112 335-447 174-315 (420)
123 cd01615 CIDE_N CIDE_N domain, 32.4 1.1E+02 0.0024 27.0 5.4 58 218-282 20-77 (78)
124 PF09379 FERM_N: FERM N-termin 32.3 2.4E+02 0.0052 24.2 7.7 38 206-243 4-42 (80)
125 smart00314 RA Ras association 32.1 2.4E+02 0.0052 25.0 7.9 51 541-591 17-68 (90)
126 smart00295 B41 Band 4.1 homolo 31.6 2.3E+02 0.005 29.0 8.9 50 197-247 3-53 (207)
127 cd01804 midnolin_N Ubiquitin-l 31.4 1.5E+02 0.0032 25.9 6.2 40 526-569 2-41 (78)
128 KOG4248 Ubiquitin-like protein 29.8 69 0.0015 41.0 5.0 64 206-276 10-73 (1143)
129 cd01779 Myosin_IXb_RA ubitquit 29.5 2.5E+02 0.0055 25.7 7.1 58 527-584 12-69 (105)
130 smart00266 CAD Domains present 28.8 1.4E+02 0.0029 26.2 5.2 31 218-248 18-48 (74)
131 cd01768 RA RA (Ras-associating 28.3 2E+02 0.0042 25.4 6.6 40 208-247 12-53 (87)
132 PF13019 Telomere_Sde2: Telome 26.9 2.7E+02 0.0058 28.3 7.7 54 527-580 2-55 (162)
133 KOG0004 Ubiquitin/40S ribosoma 26.4 99 0.0021 30.9 4.4 61 210-276 12-72 (156)
134 PF00788 RA: Ras association ( 26.3 3.1E+02 0.0067 24.1 7.6 61 527-587 4-66 (93)
135 PF00770 Peptidase_C5: Adenovi 25.8 86 0.0019 31.8 4.0 31 881-931 21-52 (183)
136 PF12436 USP7_ICP0_bdg: ICP0-b 25.5 1.4E+02 0.0031 32.4 6.1 49 198-246 177-227 (249)
137 PF12436 USP7_ICP0_bdg: ICP0-b 25.2 82 0.0018 34.2 4.2 64 212-276 88-152 (249)
138 cd01811 OASL_repeat1 2'-5' oli 24.7 2.7E+02 0.0059 24.4 6.1 63 209-273 11-73 (80)
139 cd01816 Raf_RBD Ubiquitin doma 24.2 4.9E+02 0.011 22.8 7.6 67 206-275 7-73 (74)
140 PF09855 DUF2082: Nucleic-acid 23.9 67 0.0014 27.3 2.4 34 809-842 1-36 (64)
141 cd06539 CIDE_N_A CIDE_N domain 22.1 2.1E+02 0.0045 25.4 5.1 31 218-248 20-50 (78)
142 KOG2982 Uncharacterized conser 21.6 2.2E+02 0.0047 31.9 6.3 109 167-275 298-416 (418)
143 smart00314 RA Ras association 21.5 4.4E+02 0.0095 23.3 7.6 39 207-245 14-54 (90)
144 PF14205 Cys_rich_KTR: Cystein 21.5 41 0.0009 27.4 0.7 12 807-818 27-38 (55)
145 cd01806 Nedd8 Nebb8-like ubiq 20.0 2E+02 0.0044 24.3 4.9 40 527-570 2-41 (76)
No 1
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-121 Score=1013.78 Aligned_cols=753 Identities=31% Similarity=0.487 Sum_probs=569.1
Q ss_pred CCCEEEEEcchhHHHHHHhhccccCCcccCCCCCCCChhhhhhhhcccccCCCCCcccCCCccCCCeEEcCHHHHHHHHH
Q 002138 93 DRQKVYLVPYRWWKESQILLAEKVGGVLYEVLSNDDNTDLEILLHLKKKEGSVDSDCGEGGVSVREYALVPEGMWLRALK 172 (960)
Q Consensus 93 ~~~~~ylv~~~W~~~w~~~v~~~~~g~~~~~pg~IdNs~L~~~~~~~~~~~~~~~~l~~~l~e~~Dy~~Vp~~~w~~l~~ 172 (960)
+++..|+|++.|+....++...+. ..||||+--.++ |.+...++..+.++.||.+|.+.+|+.|++
T Consensus 43 ~~~~a~i~~y~wyeg~fd~~~~dg-----~~pgPi~q~~i~---------d~e~e~lk~sl~e~idysiis~~vw~llvr 108 (823)
T COG5560 43 QCEYAVIFAYAWYEGMFDRASCDG-----GSPGPIVQGPIV---------DFEPESLKKSLREGIDYSIISGAVWQLLVR 108 (823)
T ss_pred cCceEEEEehHHhhhhcccccccC-----CCCCCCCccccc---------ccChhhcchhhhcCCCeeeechHHHHHHHH
Confidence 388999999999999888876653 469999888887 336788999999999999999999999999
Q ss_pred HcCC-CCce-eeccCC-CCCCCCceeeeeEEEEeeecC--------C-CeEEEEEccCCcHHHHHHHHHHHcCCCCCceE
Q 002138 173 WHND-SKAA-VKDFGS-SFAADEQDVFPLQIRLSVSQE--------T-NSLLVKISLEDNKVDLYKRACNLFISVSEMLY 240 (960)
Q Consensus 173 wYGg-~p~i-vi~~g~-~~~~~~vEvyPl~l~l~~~~~--------~-~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~R 240 (960)
|||. ++.+ ++..+. +.....||+||+.+++....+ + ....+.+|..+|+.++.+++...|-+|.+++|
T Consensus 109 wyGl~gl~~pr~tvll~ses~p~ve~yp~~f~lh~Lf~ing~~~n~gh~p~~~s~ss~~tlrdl~e~vmnaf~~psD~FR 188 (823)
T COG5560 109 WYGLAGLITPRITVLLPSESAPEVESYPVVFKLHWLFSINGSLINLGHDPVPHSASSHGTLRDLSERVMNAFVDPSDDFR 188 (823)
T ss_pred HhcccccceeeEEeccccccCCccccccceEEEEEEEeccchhhhcCCCcceeeccccchHHHHHHHHHHHhcCccccee
Confidence 9994 4444 332222 344458999999999987543 1 35678999999999999999999999999999
Q ss_pred EEEecCCcccccccccccccccccc--CCCC----EEEEEEeecCcccCccCccccccccccccccccCCcccccCCCCC
Q 002138 241 IWDFSGQTTQFLMNDRVTMSDDFSA--KPGE----EVFLQLQVHGFSDSVGETNDEMAEHYKIIDSICNGSVKINGSNDN 314 (960)
Q Consensus 241 LW~~~~~~~~~lL~d~~~tL~d~~l--~~~q----~IllE~k~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (960)
||++...+-...+-+.. +..+... ..++ .+.+|+-.+..-. .++. ......++..+-.
T Consensus 189 Lw~v~~~~~~~r~~~~s-~f~~~~~~a~~~~~l~~~t~~el~~d~s~l--------ll~k---it~np~wlvdsi~---- 252 (823)
T COG5560 189 LWDVVPEIMGLRLGLDS-FFRRYRVLASDGRVLHPLTRLELFEDRSVL--------LLSK---ITRNPDWLVDSIV---- 252 (823)
T ss_pred EEEecCCcccccccCHH-HHhhcchhccchhhhcccHHHHhccchhhh--------HHhh---hccCCccceeeec----
Confidence 99987554333222221 1111111 1111 1111111110000 0000 0000000000000
Q ss_pred CCcccccCCccccCCCCCccccccccccccCCCccchHHHHHHHhcChHHHHHHHh-ccccccccCCCCCCchHHHHHHH
Q 002138 315 LNSYITSSNSVRRGSGNGGVCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLG-DYQKEINYENPLGLNGELALAFG 393 (960)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~-~~~~~~~~~n~~~~~~~l~~al~ 393 (960)
...+ ... . ...|.|||.|+||||||||+||||.||+.||+||+. .|.+++|.+||+++.|.+|.+|+
T Consensus 253 ~~~n--------~si--n--ke~GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsaya 320 (823)
T COG5560 253 DDHN--------RSI--N--KEAGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYA 320 (823)
T ss_pred chhh--------hhH--H--hhccccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHH
Confidence 0000 000 0 124999999999999999999999999999999996 49999999999999999999999
Q ss_pred HHHHHhcCCCCCccChHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCC---ChHHHHH
Q 002138 394 DLLRKLWAPGGIPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQ---PEEEVAE 470 (960)
Q Consensus 394 ~L~~~l~~~~~~~i~P~~f~~~l~~~~~~F~~~~QQDA~EfL~~LLd~L~eel~~~~~kp~~e~~d~~~~---~~~~~a~ 470 (960)
+|+++++.+...+++|+.|+..||.++..|+||.|||+|||++||||+|||+|||+.+|||.+.+|-... ..+.+|+
T Consensus 321 dLik~ly~~~~haf~Ps~fK~tIG~fn~~fsGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ 400 (823)
T COG5560 321 DLIKQLYDGNLHAFTPSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAK 400 (823)
T ss_pred HHHHHHhCccccccChHHHHHHHhhhHHHhcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999864332 3466899
Q ss_pred HHHHhhhccCCCccccccceEEEEEEeeCCCCCeeeeecCCeeEEecCCCCCccceEEEEEccCCCCCCcceeEEeCCCC
Q 002138 471 EYWRNHRARNDSIIVDLCQGQYRSMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYG 550 (960)
Q Consensus 471 e~w~~~~~~n~SiI~~lF~G~~~s~l~C~~C~~~S~~~epf~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~ 550 (960)
++|..|.+||+|+|+++|+|.++||++|+.|+.+|++||||++|+||||.+..|..+|++||.+|...| ..+++.+.+
T Consensus 401 ecW~~H~kRNdSiItdLFqgmyKSTL~Cp~C~~vsitfDPfmdlTLPLPvs~vw~htiv~fp~~g~~~p--l~iel~~sS 478 (823)
T COG5560 401 ECWWEHLKRNDSIITDLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQP--LKIELDASS 478 (823)
T ss_pred HHHHHHHhcCcccHHHHHHHHhhceeeccCcCceeeeecchhhccccCchhhcccccEEEECCCCCCCc--eEEEEeccc
Confidence 999999999999999999999999999999999999999999999999999999999999999998777 778888999
Q ss_pred chHHHHHHHHhhcccCCccceeeeeeeccceeeecCCCcc-ccccccCCCcEEEEEcCCCCCCCceEEeeeecccccccc
Q 002138 551 RFQDLIDALSTKCFLRNHEKLLVAEIYRSKIFRVLDEPSD-LLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHL 629 (960)
Q Consensus 551 ~~~dl~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~-~~~~I~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~ 629 (960)
++.+|++.+.+..|+.....+.++++|.+++++.++..+. .+..|.+.|.++.|+ ..++...++++|.+.+..
T Consensus 479 t~~~lk~lv~~~~gk~gc~ei~v~~iy~g~~y~~l~~~dk~ll~~I~~~d~vylYe---~~~ngi~vpvvh~~~~~g--- 552 (823)
T COG5560 479 TIRGLKKLVDAEYGKLGCFEIKVMCIYYGGNYNMLEPADKVLLQDIPQTDFVYLYE---TNDNGIEVPVVHLRIEKG--- 552 (823)
T ss_pred hHHHHHHHHHHHhccCCccceeEEEEEeccchhhcchhhHHHHhhcCccceEEEee---cCCCCeEEEEEecccccc---
Confidence 9999999999988888777899999999999999997666 457899999999999 334447889999876653
Q ss_pred ccccccceeeccce-EEec-CCCCChhHHHHHHHHhcCCCc-CCCCCCCCcccccccCCCCCCccccccccccCCCCCCC
Q 002138 630 GRLSLEWKIFGTPL-VGRL-SDLTNGSDIRKLFLKLLDPFL-MPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVS 706 (960)
Q Consensus 630 ~~~~~~~~~fg~P~-~~~~-~~~~~~~~l~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (960)
+.+..+||.|+ ...+ ....-..+|.+.+.+++.... .+.+-...+.+..... .+ +
T Consensus 553 ---Yks~rlFg~pflqlnv~~~~~i~~kLvkE~~ell~~v~~k~tdvd~~~~q~~l~r-~e----------------s-- 610 (823)
T COG5560 553 ---YKSKRLFGDPFLQLNVLIKASIYDKLVKEFEELLVLVEMKKTDVDLVSEQVRLLR-EE----------------S-- 610 (823)
T ss_pred ---ccchhhhCCcceEEEeecchhhHHHHHHHHHHHHHHHhhcchhhhhhhhhccchh-cc----------------c--
Confidence 55778999996 2333 222233333222222211111 1111111111100000 00 0
Q ss_pred CCCcCCCCCCCCCCceEEEecCCCCcccccCCCCCcCCCCCCeEEEEecChhhHHh-hh-hhhhhhhhhhcccccccCCC
Q 002138 707 DSSEAGDEPHLSDDFQFYRLDSIRPTEIKMNEPLSISDFAKPLTIHVQWAEKMIEK-YD-TCLLSSLMEVCKPQLFTRMP 784 (960)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~-~~-~~~~~~~~~~~k~~~~~~~~ 784 (960)
...+-+.+..+-.....+..+++...+......|.|.|.+..... |. ...+- .-+.+. .
T Consensus 611 -----------~p~~wl~l~teid~kree~veeE~~~n~nd~vvi~cew~ek~y~~lFsy~~lw~----~~ei~~----~ 671 (823)
T COG5560 611 -----------SPSSWLKLETEIDTKREEQVEEEGQMNFNDAVVISCEWEEKRYLSLFSYDPLWT----IREIGA----A 671 (823)
T ss_pred -----------CcchhhhhhhhccchhhhhhhhhhccCCCcceEEeeeccccchhhhhcCCccch----hHHhhh----c
Confidence 000000011110011111111111222345678889999987653 32 11100 000011 1
Q ss_pred CCCCCHHHHHHHhhCccccCCCCCCCCccccCcceeEEEEEeeeCCCeEEEEEEeeEecccccccCCeeeeccCCCCCCC
Q 002138 785 PESVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLS 864 (960)
Q Consensus 785 ~~~isL~dCL~~f~~~E~L~~~d~wyC~~Ck~~~~AtKk~~l~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls 864 (960)
.+.+||+|||.+|.++|.|+..|.||||.||++++|+|+++||++|+|||||||||++.+.+++||++.|.|||.+|||+
T Consensus 672 ~rtiTL~dCl~eFskpEqLgl~DswyCpgCkefrqasKqmelwrlP~iLiihLkRFss~rsfrdKiddlVeyPiddldLs 751 (823)
T COG5560 672 ERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDDLDLS 751 (823)
T ss_pred cCCCcHHHHHHHhccHhhcCCcccccCCchHhhhhhhhhhhhhcCChheeeehhhhhhcccchhhhhhhhcccccccccc
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCccEEEEEEEEeecCCCCCeEEEEEeccccchhhhhhhhhccccccccCCCcEEEEcCCcceecCccccc
Q 002138 865 NYVCCKNSQLSNRYVLYAISNHYGGMGGGHYTAFVDIDYHSAFKQYEYLKTQITSVQLGHKRWFEFDDDRVYPVSEDNIK 944 (960)
Q Consensus 865 ~~v~~~~~~~~~~YdL~AVinH~G~l~gGHYtAy~k~~~~~~~~~~~~~~~~~~~~~~~~~~Wy~fdDs~Vs~vs~~~v~ 944 (960)
.|+....+ ....|+||||.||||++||||||||+|| ..+++||+|||++|+++.+++.+
T Consensus 752 ~~~~~~~~-p~liydlyavDNHygglsgGHYtAyarn--------------------~~n~~wy~fdDsritevdped~v 810 (823)
T COG5560 752 GVEYMVDD-PRLIYDLYAVDNHYGGLSGGHYTAYARN--------------------FANNGWYLFDDSRITEVDPEDSV 810 (823)
T ss_pred ceEEeecC-cceEEEeeeccccccccCCcceeeeeec--------------------ccCCceEEecCccccccCccccc
Confidence 99887755 4599999999999999999999999999 78999999999999999999999
Q ss_pred CCCeEEEEEEEec
Q 002138 945 TSAAYVLFYKRVS 957 (960)
Q Consensus 945 s~~AYvLFY~R~~ 957 (960)
+++||||||+|+.
T Consensus 811 tssaYvLFyrrk~ 823 (823)
T COG5560 811 TSSAYVLFYRRKS 823 (823)
T ss_pred cceeEEEEEEecC
Confidence 9999999999974
No 2
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-99 Score=929.04 Aligned_cols=808 Identities=34% Similarity=0.499 Sum_probs=635.7
Q ss_pred CCCCEEEEEcchhHHHHHHhhccccC----CcccC--CCCCCCChhhhhhhhcccccCCCCCcccCCCccCCCeEEcCHH
Q 002138 92 DDRQKVYLVPYRWWKESQILLAEKVG----GVLYE--VLSNDDNTDLEILLHLKKKEGSVDSDCGEGGVSVREYALVPEG 165 (960)
Q Consensus 92 ~~~~~~ylv~~~W~~~w~~~v~~~~~----g~~~~--~pg~IdNs~L~~~~~~~~~~~~~~~~l~~~l~e~~Dy~~Vp~~ 165 (960)
..++.+++|..+|+.+|++|||.... +.... .++++||.+.+ + ++....++|..+.++.||.++|++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~k~~~~~n~~~~------~-~~~~~~~~~~~~~e~~~~~~~~~~ 81 (842)
T KOG1870|consen 9 KSGKSHGLILWRCLEQWQSYVGLESYHEISTIHSQAPKHGLTDNLTFL------R-CDACDKTLRVSLLEGLDYTISPRS 81 (842)
T ss_pred ccccccchhhhhhhhhccccccceeeeccccccccccccccccCccch------h-HhhhhhHHHhhhccccccccCCHH
Confidence 56899999999999999999998322 22222 37899999999 2 233333899999999999999999
Q ss_pred HHHHHHHHc-CCCCce---eeccCCCCCCCCceeeeeEEEEeeecCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEE
Q 002138 166 MWLRALKWH-NDSKAA---VKDFGSSFAADEQDVFPLQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYI 241 (960)
Q Consensus 166 ~w~~l~~wY-Gg~p~i---vi~~g~~~~~~~vEvyPl~l~l~~~~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RL 241 (960)
+|+.+..|| .+++++ |+..+.....+.||+||..+.++...+.....+..+...|+.++.+.++..+.++.+..+|
T Consensus 82 ~~~~~~~~~~~~~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i 161 (842)
T KOG1870|consen 82 VQKLLVEWFKSGGAAILRAVFDEGEIERDDFVELYPRGLTLLKNSGNSRTSLALQADSTCPPLTSYFLESGGLPRTKFAI 161 (842)
T ss_pred HHhhccccccCCCccchhhhhcccccccCCcccccchhhhhccCCCCccceeccccccCccHHHHHHHHhcCCCcccchh
Confidence 999999999 355555 7777776767999999999999887664333489999999999999999999999999999
Q ss_pred EEecCCcccccccccc-ccccccccCCCCEEEEEEe-ecCcccCccCccccccccccccccccCCcccccCCCCCCCccc
Q 002138 242 WDFSGQTTQFLMNDRV-TMSDDFSAKPGEEVFLQLQ-VHGFSDSVGETNDEMAEHYKIIDSICNGSVKINGSNDNLNSYI 319 (960)
Q Consensus 242 W~~~~~~~~~lL~d~~-~tL~d~~l~~~q~IllE~k-~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (960)
|.++......++...+ .++..+.+..++.+++|+. .++.|+++.+.......+.. .....++...++..+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~------- 233 (842)
T KOG1870|consen 162 WASYNEKYLSLWYKSDPGKLVPTVLFQGRKMVLEVFRKFASQPSDMTLRCWMDWLSE-RDPDASGTKETRVDF------- 233 (842)
T ss_pred hhhhhHhhhcccccccccccccccccccceEEeeeccccccchhhhchhhccccccc-cccccCCCccccccc-------
Confidence 9998877666666555 7888899999999999999 47888876332111100100 001111111111000
Q ss_pred ccCCccccCCCCCccccccccccccCCCccchHHHHHHHhcChHHHHHHHhc-cccccccCCCCCCchHHHHHHHHHHHH
Q 002138 320 TSSNSVRRGSGNGGVCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGD-YQKEINYENPLGLNGELALAFGDLLRK 398 (960)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~-~~~~~~~~n~~~~~~~l~~al~~L~~~ 398 (960)
..........+|.+||.|+||||||||.+|||.+.+++++||+.. +..++|..+++++.+.++.++..++.+
T Consensus 234 -------~~~~~~~~~~~g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~~~~~~~~~~~~l~~~ 306 (842)
T KOG1870|consen 234 -------PSEEISSPSERGETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLGSAGEVASSFADLIKQ 306 (842)
T ss_pred -------ccccccCCCcccccccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCcccceechhhhhHHHH
Confidence 000112356799999999999999999999999999999999975 555699999999999999999999999
Q ss_pred hcCCCCCccChHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhc
Q 002138 399 LWAPGGIPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRA 478 (960)
Q Consensus 399 l~~~~~~~i~P~~f~~~l~~~~~~F~~~~QQDA~EfL~~LLd~L~eel~~~~~kp~~e~~d~~~~~~~~~a~e~w~~~~~ 478 (960)
+|+.....++|..++..++.++++|.|+.|||+|||++||||+||++++++..+||++.+|.+++++.+++.+.|..|..
T Consensus 307 ~~s~~~~~v~~~~~~~~~~~~a~~~~g~~q~d~~E~lafllDglhedl~~~~~kpy~~~~d~~~rp~~~~~~~~~~~~~~ 386 (842)
T KOG1870|consen 307 LWSGNKSAVAPTSFRTSLASFASEFSGYGQQDSQELLAFLLDGLHEDLNRVSSKPYVEGKDSDLRPDQEVAAEVWDYHLK 386 (842)
T ss_pred hccCCccccCchhhhhhhhhccccccCcccccchhhhhHHhhhhhHHhhccCCcCcccccccccchhhhhhHHHHHhhhh
Confidence 99988878999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccccceEEEEEEeeCCCCCeeeeecCCeeEEecCCCCCccceEEEEEccCCCCCCcceeEEeCCCCchHHHHHH
Q 002138 479 RNDSIIVDLCQGQYRSMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDA 558 (960)
Q Consensus 479 ~n~SiI~~lF~G~~~s~l~C~~C~~~S~~~epf~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~ 558 (960)
++.|+|+++|.|+++++++|+.|++++++||||.+|+||+|....+.+++++++.++...|..+.+.++++++++++.++
T Consensus 387 ~~~s~i~d~~~~~~~S~~~c~~C~~~svt~d~f~~Lslp~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~ 466 (842)
T KOG1870|consen 387 RNRSVIVDLFDGTYKSTLQCPTCGKVSVTFDPFGYLSLPLPGKEIQKLEVTVPHGDGFRKPGALGVSVAKNGRIRDLLEY 466 (842)
T ss_pred hccceeeeeecceecccccCccCCCceEEeeccccccccCCCCcccceeEEEecCCCCCChhheeeeccccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccCCccceeeeeeeccceeeecCCCccccccccCCCcEEEEEcCCCCCCCc-e-EEeeeeccccccc-ccccccc
Q 002138 559 LSTKCFLRNHEKLLVAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPS-L-VLFMHERKEESCH-LGRLSLE 635 (960)
Q Consensus 559 l~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~I~~~d~i~~ye~~~~~~~~~-~-~~~~~~~~~~~~~-~~~~~~~ 635 (960)
|.+.+++. ...+..++++.+++++++......+..|...+.+++|+++....... + +...+.+.+.... .......
T Consensus 467 l~~~~~~~-~~~l~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 545 (842)
T KOG1870|consen 467 LSRTVGLL-SWELKPVEILFDCFNKIFAADELKLDSIYSDEELFDYELGVLKVQGSIYAIIVVRFRSRLPRSKGIRSHVS 545 (842)
T ss_pred HHHHhccc-hhhcccceeccchhhhhhccCccccccccCCcceEEeecccccccccceEEEEEeeccccccccCcccCCC
Confidence 99999999 89999999999999999997667888999999999999986222222 2 2233333333222 2334567
Q ss_pred ceeeccceEEec-C-CCCChhHHHHHHHHhcCCCcCCCCCC--CCccc-cccc----CCCCCCccccccccccCCCCCCC
Q 002138 636 WKIFGTPLVGRL-S-DLTNGSDIRKLFLKLLDPFLMPVGDD--SDFSD-EAGK----IDNGDSIVEDVTSSRVSDNDAVS 706 (960)
Q Consensus 636 ~~~fg~P~~~~~-~-~~~~~~~l~~~~~~~l~~~~~~~~~~--~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 706 (960)
.++||.|+++.+ . ...+..++...+..+.+++....... ...+. .... .+.....+. ..+.... .+ .
T Consensus 546 ~~~~g~p~~~~~~~~~~~t~~~l~~~~~~~~s~~~~~~~~~v~~~~~~~~~~~~~e~~~~s~~~~~--~~~~~~~-~~-~ 621 (842)
T KOG1870|consen 546 SKLFGLPLLVSVLSGAQSTEEDLLSVICHRTSRYSREPPLNVGYGVDDQSLKEVSEQSAESSSSVS--RDPSEDD-NS-D 621 (842)
T ss_pred ccccCCcceeeccCCCcccccchhhHHhhcccccCCcCccccccCCCccccccccccccccccccc--CCChhHh-cc-c
Confidence 789999999999 4 56788899999999988887432000 00000 0000 000000000 0000000 00 0
Q ss_pred CCCcCCCCCCCCCCceEEEecCCCCcccccCCCCCcCCCCCCeEEEEecChhhHHhhhhhhhhhhhhhcccccccCCC-C
Q 002138 707 DSSEAGDEPHLSDDFQFYRLDSIRPTEIKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMP-P 785 (960)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~k~~~~~~~~-~ 785 (960)
...+.+........+.+.-.+.. ...+....+ ....++++|.+....+|........++..+.+....+. .
T Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (842)
T KOG1870|consen 622 QDLSLECLSEESALRFFQSLESR-------NKSDSEFEP-GSTSIAVDWSPSAKYKYSSSLVSQPPEVEPRGASRSKGSP 693 (842)
T ss_pred cccchhhccCccccccccccccc-------ccccccccC-CCceeecccChhhccccccccccccccccccccccccCCC
Confidence 00000000001111111111100 000111111 12238999999998887665555555555554433332 2
Q ss_pred CCCCHHHHHHHhhCccccCCCCCCCCccccCcceeEEEEEeeeCCCeEEEEEEeeEecccccccCCeeeeccCCCCCCCC
Q 002138 786 ESVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLSN 865 (960)
Q Consensus 786 ~~isL~dCL~~f~~~E~L~~~d~wyC~~Ck~~~~AtKk~~l~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~ 865 (960)
..++|++||+.|+++|.|+.+++||||+|++|++|+|+++||+||+|||||||||+|.++++.|+++.|+|||..|||++
T Consensus 694 ~~~sL~~cl~~F~~~E~L~~~~~w~C~~Cke~~~A~Kk~~lwrlPeiLiihLKrF~~~r~~~~k~~~~v~fPi~~ld~s~ 773 (842)
T KOG1870|consen 694 APNSLESCLELFSEPETLGKDDRWYCPQCKELRQATKKLDLWRLPEILIIHLKRFQYSRESSSKVKTKVEFPLGSLDLSE 773 (842)
T ss_pred CcccHHHHHHhhcchhcCCccccccChHHHHHHHHhhhhhhhhCCceEEEEeecceeechhhhhhCccccCCCcCCCcch
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCccEEEEEEEEeecCCCCCeEEEEEeccccchhhhhhhhhccccccccCCCcEEEEcCCcceecCcccccC
Q 002138 866 YVCCKNSQLSNRYVLYAISNHYGGMGGGHYTAFVDIDYHSAFKQYEYLKTQITSVQLGHKRWFEFDDDRVYPVSEDNIKT 945 (960)
Q Consensus 866 ~v~~~~~~~~~~YdL~AVinH~G~l~gGHYtAy~k~~~~~~~~~~~~~~~~~~~~~~~~~~Wy~fdDs~Vs~vs~~~v~s 945 (960)
|+..++. .+|+||||+||||+|++||||||+|+ ..+++||+|||++|+++++++|.+
T Consensus 774 ~~~~~~~---~~Y~l~av~nHyG~l~~GHYta~~k~--------------------~~~~~w~~fdDs~v~~~~~~~i~t 830 (842)
T KOG1870|consen 774 FVVNKEQ---VLYDLYAVGNHYGQLSGGHYTAYAKN--------------------VGDGKWYLFDDSSVSEVDEDEIDT 830 (842)
T ss_pred hhccCcc---ceeeeeeeecccCCcCCcchhhhhhc--------------------CCCCceEEeccccCCCCChhhccc
Confidence 9998764 89999999999999999999999999 679999999999999999999999
Q ss_pred CCeEEEEEEEec
Q 002138 946 SAAYVLFYKRVS 957 (960)
Q Consensus 946 ~~AYvLFY~R~~ 957 (960)
++||+|||||++
T Consensus 831 ~~aY~Lfy~r~~ 842 (842)
T KOG1870|consen 831 EAAYVLFYRRLD 842 (842)
T ss_pred ccceEEEEEecC
Confidence 999999999985
No 3
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-64 Score=516.46 Aligned_cols=334 Identities=33% Similarity=0.537 Sum_probs=279.2
Q ss_pred cccccccccCCCccchHHHHHHHhcChHHHHHHHh-ccccccccCCCCCCchH-HHHHHHHHHHHhcCCCCCccChHHHH
Q 002138 336 LLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLG-DYQKEINYENPLGLNGE-LALAFGDLLRKLWAPGGIPVAPRMFK 413 (960)
Q Consensus 336 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~-~~~~~~~~~n~~~~~~~-l~~al~~L~~~l~~~~~~~i~P~~f~ 413 (960)
.-.+.||.|+|||||||++||||+++..|...|+. -|.+.+|.++|.+..|. .+..|..|...+...+..+|+|+.|+
T Consensus 68 n~~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~g~~~~k~F~~l~~~~~~Hg~~sis~~nF~ 147 (415)
T COG5533 68 NLPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYETPGCHGPKSISPRNFI 147 (415)
T ss_pred ccCCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCcchhHHHHHHHHHhccccCCCcccchHHHH
Confidence 35689999999999999999999999999997775 48899999999999995 45556777777777777889999999
Q ss_pred HHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhhhcc-CCCCccccCCCCCCh-----HHHHHHHHHhhhccCCCccccc
Q 002138 414 LKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVK-CKPYLEAKDAEGQPE-----EEVAEEYWRNHRARNDSIIVDL 487 (960)
Q Consensus 414 ~~l~~~~~~F~~~~QQDA~EfL~~LLd~L~eel~~~~-~kp~~e~~d~~~~~~-----~~~a~e~w~~~~~~n~SiI~~l 487 (960)
..++..++.|++.+|||||||+.++||.||||+|.-. ++|..+.+|...+-. .....-.|+.|...|.|+|.+.
T Consensus 148 ~i~~~~n~~fs~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~S~~EWn~~L~sn~S~v~~~ 227 (415)
T COG5533 148 DILSGRNKLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSHHEWNLHLRSNKSLVAKT 227 (415)
T ss_pred HHHccccccccccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcchhhhhhhHHhhccchHHHHHH
Confidence 9999999999999999999999999999999999744 456666655432211 1123358999999999999999
Q ss_pred cceEEEEEEeeCCCCCeeeeecCCeeEEecCCCCCccceEEEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhcccCC
Q 002138 488 CQGQYRSMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRN 567 (960)
Q Consensus 488 F~G~~~s~l~C~~C~~~S~~~epf~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~ 567 (960)
|.|+++++++|..|++.|+++.+|..|++|+|.-
T Consensus 228 f~gq~~srlqC~~C~~TStT~a~fs~l~vp~~~v---------------------------------------------- 261 (415)
T COG5533 228 FFGQDKSRLQCEACNYTSTTIAMFSTLLVPPYEV---------------------------------------------- 261 (415)
T ss_pred HhhhhhhhhhhhhcCCceeEEeccceeeeccchh----------------------------------------------
Confidence 9999999999999999999999999999987631
Q ss_pred ccceeeeeeeccceeeecCCCccccccccCCCcEEEEEcCCCCCCCceEEeeeeccccccccccccccceeeccceEEec
Q 002138 568 HEKLLVAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRL 647 (960)
Q Consensus 568 ~~~l~~~e~~~~~~~~~~~~~~~~~~~I~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~ 647 (960)
T Consensus 262 -------------------------------------------------------------------------------- 261 (415)
T COG5533 262 -------------------------------------------------------------------------------- 261 (415)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCChhHHHHHHHHhcCCCcCCCCCCCCcccccccCCCCCCccccccccccCCCCCCCCCCcCCCCCCCCCCceEEEec
Q 002138 648 SDLTNGSDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLD 727 (960)
Q Consensus 648 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (960)
T Consensus 262 -------------------------------------------------------------------------------- 261 (415)
T COG5533 262 -------------------------------------------------------------------------------- 261 (415)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccccCCCCCcCCCCCCeEEEEecChhhHHhhhhhhhhhhhhhcccccccCCCCCCCCHHHHHHHhhCccccCCCC
Q 002138 728 SIRPTEIKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPED 807 (960)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~dCL~~f~~~E~L~~~d 807 (960)
..+.|.|||+.|+++|.|+++|
T Consensus 262 ----------------------------------------------------------~~~~l~eC~~~f~~~e~L~g~d 283 (415)
T COG5533 262 ----------------------------------------------------------VQLGLQECIDRFYEEEKLEGKD 283 (415)
T ss_pred ----------------------------------------------------------eeecHHHHHHHhhhHHhhcCcc
Confidence 1135899999999999999999
Q ss_pred CCCCccccCcceeEEEEEeeeCCCeEEEEEEeeEecccccccCCeee----eccCCCCCCCCccccCCCCCCccEEEEEE
Q 002138 808 MWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYV----DFPIDDLDLSNYVCCKNSQLSNRYVLYAI 883 (960)
Q Consensus 808 ~wyC~~Ck~~~~AtKk~~l~~lP~iLiIhLKRF~~~~~~~~Ki~~~V----~FPi~~LDls~~v~~~~~~~~~~YdL~AV 883 (960)
.|.||+|++++.++|++.|.++|++|||||+||.-.-..+.|||+.- +||.+ ....+-.-..-+-.|..|.|+||
T Consensus 284 ~W~CpkC~~k~ss~K~~~I~~lP~~LII~i~RF~i~V~~~~kiD~p~gw~~~~~~e-~~v~~~f~~~~~~~P~~Y~L~gv 362 (415)
T COG5533 284 AWRCPKCGRKESSRKRMEILVLPDVLIIHISRFHISVMGRKKIDTPQGWKNTASVE-VNVTLLFNNGIGYIPRKYSLLGV 362 (415)
T ss_pred cccCchhcccccchheEEEEecCceEEEEeeeeeEEeecccccCCCcchhccCCce-ecccccccCCCCCCccceeEEEE
Confidence 99999999999999999999999999999999996655666776643 34422 11221111122226789999999
Q ss_pred EEeecCCCCCeEEEEEeccccchhhhhhhhhccccccccCCCcEEEEcCCcceecCc-ccccCCCeEEEEEEEe
Q 002138 884 SNHYGGMGGGHYTAFVDIDYHSAFKQYEYLKTQITSVQLGHKRWFEFDDDRVYPVSE-DNIKTSAAYVLFYKRV 956 (960)
Q Consensus 884 inH~G~l~gGHYtAy~k~~~~~~~~~~~~~~~~~~~~~~~~~~Wy~fdDs~Vs~vs~-~~v~s~~AYvLFY~R~ 956 (960)
+||+|++.||||+++|+. ++.|+.||||.|++++- -+....+||||||+|.
T Consensus 363 ~Ch~G~L~gGHY~s~v~~----------------------~~~W~~~dDs~vr~~~~~t~~~~pSsYilFY~r~ 414 (415)
T COG5533 363 VCHNGTLNGGHYFSEVKR----------------------SGTWNVYDDSQVRKGSRTTSGSHPSSYILFYTRS 414 (415)
T ss_pred EeecceecCceeEEeeee----------------------cCceEEechhheeeccceecccCCcceEEEEEec
Confidence 999999999999999998 79999999999999984 4455679999999996
No 4
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-63 Score=551.51 Aligned_cols=306 Identities=34% Similarity=0.570 Sum_probs=271.2
Q ss_pred ccccccccccCCCccchHHHHHHHhcChHHHHHHHhccccccccCCCCCCchHHHHHHHHHHHHhcCCCCCccChHHHHH
Q 002138 335 CLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKL 414 (960)
Q Consensus 335 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~al~~L~~~l~~~~~~~i~P~~f~~ 414 (960)
...-.+||.|+|||||+|||||||.++|||++||+...+..-+. ....++.++|+..+.........+++|..|+.
T Consensus 104 ~~~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~----~~~~C~lc~~q~hi~~A~~~~g~pisP~~i~s 179 (545)
T KOG1865|consen 104 PAAVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCH----RAKFCMLCTFQAHITRALHNPGHPISPSQILS 179 (545)
T ss_pred cccCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhcc----ccCeeeehHHHHHHHHHhcCCCCccChHHHHH
Confidence 45677999999999999999999999999999999764443332 23467899999998888777777999999999
Q ss_pred HHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCccccccceEEEE
Q 002138 415 KLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRS 494 (960)
Q Consensus 415 ~l~~~~~~F~~~~QQDA~EfL~~LLd~L~eel~~~~~kp~~e~~d~~~~~~~~~a~e~w~~~~~~n~SiI~~lF~G~~~s 494 (960)
.|..++..|..+.|+||||||++++|.|+.-.-.... .. .+..+..++|..+|+|.+++
T Consensus 180 ~L~~I~~~f~~grQEDAHEFLr~~vd~mqk~cL~g~~-----~~----------------~~~sq~ttlv~~iFGG~LrS 238 (545)
T KOG1865|consen 180 NLRNISAHFGRGRQEDAHEFLRFTVDAMQKACLPGHK-----QV----------------DPRSQDTTLVHQIFGGYLRS 238 (545)
T ss_pred hhhhhcccccCCchhhHHHHHHHHHHHHHHhhcCCCc-----cC----------------Ccccccceehhhhhccchhh
Confidence 9999999999999999999999999999966531111 01 12234568899999999999
Q ss_pred EEeeCCCCCeeeeecCCeeEEecCCCCCccceEEEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhcccCCccceeee
Q 002138 495 MLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVA 574 (960)
Q Consensus 495 ~l~C~~C~~~S~~~epf~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~ 574 (960)
+++|..|+++|.++|+.++|+|.|- .
T Consensus 239 ~vkC~~C~~vS~tyE~~~dltvei~-d----------------------------------------------------- 264 (545)
T KOG1865|consen 239 QIKCLHCKGVSDTYEPYLDLTLEIQ-D----------------------------------------------------- 264 (545)
T ss_pred ceecccCCCcccccccccceEEEec-c-----------------------------------------------------
Confidence 9999999999999999999999762 0
Q ss_pred eeeccceeeecCCCccccccccCCCcEEEEEcCCCCCCCceEEeeeeccccccccccccccceeeccceEEecCCCCChh
Q 002138 575 EIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNGS 654 (960)
Q Consensus 575 e~~~~~~~~~~~~~~~~~~~I~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~ 654 (960)
T Consensus 265 -------------------------------------------------------------------------------- 264 (545)
T KOG1865|consen 265 -------------------------------------------------------------------------------- 264 (545)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCCCcCCCCCCCCcccccccCCCCCCccccccccccCCCCCCCCCCcCCCCCCCCCCceEEEecCCCCccc
Q 002138 655 DIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTEI 734 (960)
Q Consensus 655 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (960)
T Consensus 265 -------------------------------------------------------------------------------- 264 (545)
T KOG1865|consen 265 -------------------------------------------------------------------------------- 264 (545)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCcCCCCCCeEEEEecChhhHHhhhhhhhhhhhhhcccccccCCCCCCCCHHHHHHHhhCccccCCCCCCCCccc
Q 002138 735 KMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPRC 814 (960)
Q Consensus 735 ~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~dCL~~f~~~E~L~~~d~wyC~~C 814 (960)
.-+|++||+.|+++|.|+++|+|.|.+|
T Consensus 265 ----------------------------------------------------~~sl~~AL~qFt~~E~L~gen~Y~C~~C 292 (545)
T KOG1865|consen 265 ----------------------------------------------------ASSLQQALEQFTKPEKLDGENAYHCGRC 292 (545)
T ss_pred ----------------------------------------------------chhHHHHHHHhhhHHhhCCccccccchh
Confidence 1279999999999999999999999999
Q ss_pred cCcceeEEEEEeeeCCCeEEEEEEeeEecccccccCCeeeeccCCCCCCCCccccCCCCCCccEEEEEEEEeec-CCCCC
Q 002138 815 KKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYG-GMGGG 893 (960)
Q Consensus 815 k~~~~AtKk~~l~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~AVinH~G-~l~gG 893 (960)
|+++.|.|++.|.++|.||.||||||+. ++..||...|.|| +.|||.|||..+++ .+.+|.||||++|.| ....|
T Consensus 293 k~~v~A~K~lti~raPnVLTi~LKRF~~--~~~gKI~K~I~fP-E~LDl~PyMS~~~e-~s~~Y~LYavlVH~g~~~~~G 368 (545)
T KOG1865|consen 293 KQKVPASKQLTIHRAPNVLTLHLKRFSN--GTGGKISKPVSFP-ETLDLQPYMSQPNE-GSTVYKLYAVLVHLGTSCHSG 368 (545)
T ss_pred hhhCcccceeeeecCCceEEEeeehhcc--CcccccccccCCc-ccccccccccCCCC-CCceEEEEEEEEeccccccCC
Confidence 9999999999999999999999999998 5568999999999 89999999996665 889999999999999 89999
Q ss_pred eEEEEEeccccchhhhhhhhhccccccccCCCcEEEEcCCcceecCcccccCCCeEEEEEEEe
Q 002138 894 HYTAFVDIDYHSAFKQYEYLKTQITSVQLGHKRWFEFDDDRVYPVSEDNIKTSAAYVLFYKRV 956 (960)
Q Consensus 894 HYtAy~k~~~~~~~~~~~~~~~~~~~~~~~~~~Wy~fdDs~Vs~vs~~~v~s~~AYvLFY~R~ 956 (960)
||++|||. ..|+||.|||+.|+.++++.|++..||||||.|.
T Consensus 369 HY~cYvks---------------------~~g~Wy~~DDS~V~~~~~~~VLsq~AYmLfY~R~ 410 (545)
T KOG1865|consen 369 HYFCYVKS---------------------QNGQWYKMDDSEVTQSSIESVLSQQAYILFYARK 410 (545)
T ss_pred ceEEEEEc---------------------CCCceEEccCceeeeccccceecccceEEEEEee
Confidence 99999998 6889999999999999999999999999999996
No 5
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7.5e-62 Score=540.32 Aligned_cols=287 Identities=30% Similarity=0.516 Sum_probs=250.9
Q ss_pred ccccCCCccchHHHHHHHhcChHHHHHHHhccccccccCCCCCCchHHHHHHHHHHHHhcCCC--CCccChHHHHHHHhh
Q 002138 341 GLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPG--GIPVAPRMFKLKLAN 418 (960)
Q Consensus 341 GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~al~~L~~~l~~~~--~~~i~P~~f~~~l~~ 418 (960)
||.|+||||||||+||||+| .+++.+|+.||.+||... ...++|..|+.+++.
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~-------------------------~~l~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~~ 55 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF-------------------------ENLLTCLKDLFESISEQKKRTGVISPKKFITRLKR 55 (300)
T ss_pred CccCCCcceehhHHHHHhhh-------------------------HHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHh
Confidence 99999999999999999988 358889999999998764 346999999999999
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCccccccceEEEEEEee
Q 002138 419 FAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVC 498 (960)
Q Consensus 419 ~~~~F~~~~QQDA~EfL~~LLd~L~eel~~~~~kp~~e~~d~~~~~~~~~a~e~w~~~~~~n~SiI~~lF~G~~~s~l~C 498 (960)
..|.|.+++||||||||.+|||.||+++++..+++..+. ...+........++|.++|+|+++++++|
T Consensus 56 ~~~~f~~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~~------------~~~~~~~~~~~~~~i~~~F~G~~~~~~~C 123 (300)
T cd02663 56 ENELFDNYMHQDAHEFLNFLLNEIAEILDAERKAEKANR------------KLNNNNNAEPQPTWVHEIFQGILTNETRC 123 (300)
T ss_pred hcCCCCCCccccHHHHHHHHHHHHHHHHHHHhhcccccc------------cccccccCCcCCCChhhhCceEEEeeEEe
Confidence 999999999999999999999999999987654332110 11122333456788999999999999999
Q ss_pred CCCCCeeeeecCCeeEEecCCCCCccceEEEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhcccCCccceeeeeeec
Q 002138 499 PVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYR 578 (960)
Q Consensus 499 ~~C~~~S~~~epf~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~e~~~ 578 (960)
..|++++.++|+|++|+|+||..
T Consensus 124 ~~C~~~s~~~e~f~~Lsl~i~~~--------------------------------------------------------- 146 (300)
T cd02663 124 LTCETVSSRDETFLDLSIDVEQN--------------------------------------------------------- 146 (300)
T ss_pred CCCCCCccccceeEEeccCCCCc---------------------------------------------------------
Confidence 99999999999999999988621
Q ss_pred cceeeecCCCccccccccCCCcEEEEEcCCCCCCCceEEeeeeccccccccccccccceeeccceEEecCCCCChhHHHH
Q 002138 579 SKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNGSDIRK 658 (960)
Q Consensus 579 ~~~~~~~~~~~~~~~~I~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~l~~ 658 (960)
T Consensus 147 -------------------------------------------------------------------------------- 146 (300)
T cd02663 147 -------------------------------------------------------------------------------- 146 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCCCcCCCCCCCCcccccccCCCCCCccccccccccCCCCCCCCCCcCCCCCCCCCCceEEEecCCCCcccccCC
Q 002138 659 LFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTEIKMNE 738 (960)
Q Consensus 659 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (960)
T Consensus 147 -------------------------------------------------------------------------------- 146 (300)
T cd02663 147 -------------------------------------------------------------------------------- 146 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcCCCCCCeEEEEecChhhHHhhhhhhhhhhhhhcccccccCCCCCCCCHHHHHHHhhCccccCCCCCCCCccccCcc
Q 002138 739 PLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHW 818 (960)
Q Consensus 739 ~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~dCL~~f~~~E~L~~~d~wyC~~Ck~~~ 818 (960)
.+|++||+.|+++|.|.++|.|+|++|++++
T Consensus 147 -------------------------------------------------~sl~~~L~~~~~~E~l~~~~~~~C~~C~~~~ 177 (300)
T cd02663 147 -------------------------------------------------TSITSCLRQFSATETLCGRNKFYCDECCSLQ 177 (300)
T ss_pred -------------------------------------------------CCHHHHHHHhhcccccCCCCcEECCCCCCce
Confidence 2689999999999999999999999999999
Q ss_pred eeEEEEEeeeCCCeEEEEEEeeEeccc--ccccCCeeeeccCCCCCCCCccccCCCCCCccEEEEEEEEeec-CCCCCeE
Q 002138 819 QASKKLDLWRSPDILVIHLKRFSFSRY--FKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYG-GMGGGHY 895 (960)
Q Consensus 819 ~AtKk~~l~~lP~iLiIhLKRF~~~~~--~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~AVinH~G-~l~gGHY 895 (960)
.|+|++.|+++|+|||||||||.|+.. ...|+.+.|.||+ .|||.++...... ....|+|+|||+|.| ++++|||
T Consensus 178 ~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~-~L~~~~~~~~~~~-~~~~Y~L~~vi~H~G~~~~~GHY 255 (300)
T cd02663 178 EAEKRMKIKKLPKILALHLKRFKYDEQLNRYIKLFYRVVFPL-ELRLFNTTDDAEN-PDRLYELVAVVVHIGGGPNHGHY 255 (300)
T ss_pred eEEEEEEeccCCceeEEEEEeEEeecccCCceecCceEecCc-EEeccccccccCC-CCeEEEEEEEEEEecCCCCCCce
Confidence 999999999999999999999999854 3679999999995 8999887543332 567999999999999 5999999
Q ss_pred EEEEeccccchhhhhhhhhccccccccCCCcEEEEcCCcceecCccccc--------CCCeEEEEEE
Q 002138 896 TAFVDIDYHSAFKQYEYLKTQITSVQLGHKRWFEFDDDRVYPVSEDNIK--------TSAAYVLFYK 954 (960)
Q Consensus 896 tAy~k~~~~~~~~~~~~~~~~~~~~~~~~~~Wy~fdDs~Vs~vs~~~v~--------s~~AYvLFY~ 954 (960)
|||+|. +++||+|||+.|+++++++|. +.+||||||+
T Consensus 256 ~a~~k~----------------------~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~~aYiLfY~ 300 (300)
T cd02663 256 VSIVKS----------------------HGGWLLFDDETVEKIDENAVEEFFGDSPNQATAYVLFYQ 300 (300)
T ss_pred EEEEEC----------------------CCcEEEEcCCceEEcCHHHHHHhcCCCCCCCceEEEEeC
Confidence 999997 889999999999999988885 6899999996
No 6
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.4e-59 Score=524.58 Aligned_cols=295 Identities=27% Similarity=0.452 Sum_probs=253.3
Q ss_pred ccccCCCccchHHHHHHHhcChHHHHHHHhcccccc-ccC----CCCCCchHHHHHHHHHHHHhcCCCCCccChHHHHHH
Q 002138 341 GLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEI-NYE----NPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKLK 415 (960)
Q Consensus 341 GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~-~~~----n~~~~~~~l~~al~~L~~~l~~~~~~~i~P~~f~~~ 415 (960)
||.|+||||||||+||||+|+|+|+++++....... ... +......+++.+|+.||..||.+...+++|..|..+
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~~~~i~p~~f~~~ 80 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGNRSVVDPSGFVKA 80 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCCCceEChHHHHHH
Confidence 899999999999999999999999999986422111 000 001123579999999999999988889999999998
Q ss_pred HhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCccccccceEEEEE
Q 002138 416 LANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSM 495 (960)
Q Consensus 416 l~~~~~~F~~~~QQDA~EfL~~LLd~L~eel~~~~~kp~~e~~d~~~~~~~~~a~e~w~~~~~~n~SiI~~lF~G~~~s~ 495 (960)
++ |..++|||||||+.+|||.||+++..... ....++|.++|.|++.++
T Consensus 81 l~-----~~~~~QqDa~EFl~~lLd~L~~~l~~~~~--------------------------~~~~~~i~~~F~G~~~~~ 129 (324)
T cd02668 81 LG-----LDTGQQQDAQEFSKLFLSLLEAKLSKSKN--------------------------PDLKNIVQDLFRGEYSYV 129 (324)
T ss_pred hC-----CCCccccCHHHHHHHHHHHHHHHHhhccC--------------------------CcccchhhhhcceEEEEE
Confidence 84 67789999999999999999999864211 012467999999999999
Q ss_pred EeeCCCCCeeeeecCCeeEEecCCCCCccceEEEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhcccCCccceeeee
Q 002138 496 LVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAE 575 (960)
Q Consensus 496 l~C~~C~~~S~~~epf~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~e 575 (960)
++|..|++++.+.|+|+.|+|+||.
T Consensus 130 ~~C~~C~~~s~~~e~f~~l~l~i~~------------------------------------------------------- 154 (324)
T cd02668 130 TQCSKCGRESSLPSKFYELELQLKG------------------------------------------------------- 154 (324)
T ss_pred EEeCCCCCccccccccEEEEEEecc-------------------------------------------------------
Confidence 9999999999999999999998862
Q ss_pred eeccceeeecCCCccccccccCCCcEEEEEcCCCCCCCceEEeeeeccccccccccccccceeeccceEEecCCCCChhH
Q 002138 576 IYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNGSD 655 (960)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~I~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~ 655 (960)
T Consensus 155 -------------------------------------------------------------------------------- 154 (324)
T cd02668 155 -------------------------------------------------------------------------------- 154 (324)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCCcCCCCCCCCcccccccCCCCCCccccccccccCCCCCCCCCCcCCCCCCCCCCceEEEecCCCCcccc
Q 002138 656 IRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTEIK 735 (960)
Q Consensus 656 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (960)
T Consensus 155 -------------------------------------------------------------------------------- 154 (324)
T cd02668 155 -------------------------------------------------------------------------------- 154 (324)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCcCCCCCCeEEEEecChhhHHhhhhhhhhhhhhhcccccccCCCCCCCCHHHHHHHhhCccccCCCCCCCCcccc
Q 002138 736 MNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPRCK 815 (960)
Q Consensus 736 ~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~dCL~~f~~~E~L~~~d~wyC~~Ck 815 (960)
..+|++||+.|+.+|.|.+++.|+|++|+
T Consensus 155 ---------------------------------------------------~~sl~~~L~~~~~~e~l~g~~~~~C~~C~ 183 (324)
T cd02668 155 ---------------------------------------------------HKTLEECIDEFLKEEQLTGDNQYFCESCN 183 (324)
T ss_pred ---------------------------------------------------cCCHHHHHHHhhCceecCCCccccCCCCC
Confidence 12689999999999999999999999999
Q ss_pred CcceeEEEEEeeeCCCeEEEEEEeeEecc--cccccCCeeeeccCCCCCCCCccccCCCCCCccEEEEEEEEeec-CCCC
Q 002138 816 KHWQASKKLDLWRSPDILVIHLKRFSFSR--YFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYG-GMGG 892 (960)
Q Consensus 816 ~~~~AtKk~~l~~lP~iLiIhLKRF~~~~--~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~AVinH~G-~l~g 892 (960)
+++.|+|+..|.++|+||+||||||.|+. +.+.|+++.|.|| +.|||++|+..... .+..|+|+|||+|.| ++.+
T Consensus 184 ~~~~a~k~~~i~~lP~iLii~LkRf~~d~~~~~~~Ki~~~v~fp-~~Ldl~~~~~~~~~-~~~~Y~L~~vI~H~G~~~~~ 261 (324)
T cd02668 184 SKTDATRRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISFP-EILDMGEYLAESDE-GSYVYELSGVLIHQGVSAYS 261 (324)
T ss_pred ceeeeEEEEEecCCCCeEEEEEEcceeecccCcceeCCcEEECC-CeEechhhcccccC-CCcEEEEEEEEEEcCCCCCC
Confidence 99999999999999999999999999974 4578999999999 69999999865433 678899999999999 6899
Q ss_pred CeEEEEEeccccchhhhhhhhhccccccccCCCcEEEEcCCcceecCcccc---------------------cCCCeEEE
Q 002138 893 GHYTAFVDIDYHSAFKQYEYLKTQITSVQLGHKRWFEFDDDRVYPVSEDNI---------------------KTSAAYVL 951 (960)
Q Consensus 893 GHYtAy~k~~~~~~~~~~~~~~~~~~~~~~~~~~Wy~fdDs~Vs~vs~~~v---------------------~s~~AYvL 951 (960)
|||+||+|+ ..+++||.|||+.|++++.+.| .+..||||
T Consensus 262 GHY~~~~k~--------------------~~~~~W~~fdD~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l 321 (324)
T cd02668 262 GHYIAHIKD--------------------EQTGEWYKFNDEDVEEMPGKPLKLGNSEDPAKPRKSEIKKGTHSSRTAYML 321 (324)
T ss_pred EeeEEEEEC--------------------CCCCcEEEEECCceEEcCHHHhhcccccccccccccccCCCccccCceEEE
Confidence 999999998 4578999999999999976544 46789999
Q ss_pred EEE
Q 002138 952 FYK 954 (960)
Q Consensus 952 FY~ 954 (960)
|||
T Consensus 322 ~y~ 324 (324)
T cd02668 322 VYK 324 (324)
T ss_pred EeC
Confidence 996
No 7
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.8e-59 Score=524.58 Aligned_cols=318 Identities=33% Similarity=0.602 Sum_probs=265.6
Q ss_pred cccccCCCccchHHHHHHHhcChHHHHHHHhccccccccCCCCCCchHHHHHHHHHHHHhc-CCCCCccChHHHHHHHhh
Q 002138 340 TGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLW-APGGIPVAPRMFKLKLAN 418 (960)
Q Consensus 340 ~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~al~~L~~~l~-~~~~~~i~P~~f~~~l~~ 418 (960)
+||.|+||||||||+||||+|+|+|+++++...+... . .......++.++|+.|+..|+ +....++.|..|+.+++.
T Consensus 1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~-~-~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~~ 78 (328)
T cd02660 1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCT-C-LSCSPNSCLSCAMDEIFQEFYYSGDRSPYGPINLLYLSWK 78 (328)
T ss_pred CCccccCcchHHHHHHHHHhcCHHHHHHHhcCccccc-c-ccCCccccHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHh
Confidence 5999999999999999999999999999986422210 0 011224579999999999994 445678999999999999
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCccccccceEEEEEEee
Q 002138 419 FAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVC 498 (960)
Q Consensus 419 ~~~~F~~~~QQDA~EfL~~LLd~L~eel~~~~~kp~~e~~d~~~~~~~~~a~e~w~~~~~~n~SiI~~lF~G~~~s~l~C 498 (960)
..+.|.++.|||||||+.+||+.||+++......+ .......++|.++|+|++.++++|
T Consensus 79 ~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~---------------------~~~~~~~~~i~~~F~g~~~~~~~C 137 (328)
T cd02660 79 HSRNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNEA---------------------NDESHCNCIIHQTFSGSLQSSVTC 137 (328)
T ss_pred hchhhcccccccHHHHHHHHHHHHHHHhhcccccc---------------------cccccCCceeEEecccEEEeeeEc
Confidence 89999999999999999999999999987543321 011234588999999999999999
Q ss_pred CCCCCeeeeecCCeeEEecCCCCCccceEEEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhcccCCccceeeeeeec
Q 002138 499 PVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYR 578 (960)
Q Consensus 499 ~~C~~~S~~~epf~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~e~~~ 578 (960)
..|++++.++|+|+.|+|+||.......
T Consensus 138 ~~C~~~s~~~e~f~~lsl~i~~~~~~~~---------------------------------------------------- 165 (328)
T cd02660 138 QRCGGVSTTVDPFLDLSLDIPNKSTPSW---------------------------------------------------- 165 (328)
T ss_pred CCCCCccceecccceeeeeccccccccc----------------------------------------------------
Confidence 9999999999999999999985421000
Q ss_pred cceeeecCCCccccccccCCCcEEEEEcCCCCCCCceEEeeeeccccccccccccccceeeccceEEecCCCCChhHHHH
Q 002138 579 SKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNGSDIRK 658 (960)
Q Consensus 579 ~~~~~~~~~~~~~~~~I~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~l~~ 658 (960)
+.
T Consensus 166 ---------~~--------------------------------------------------------------------- 167 (328)
T cd02660 166 ---------AL--------------------------------------------------------------------- 167 (328)
T ss_pred ---------cc---------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHhcCCCcCCCCCCCCcccccccCCCCCCccccccccccCCCCCCCCCCcCCCCCCCCCCceEEEecCCCCcccccCC
Q 002138 659 LFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTEIKMNE 738 (960)
Q Consensus 659 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (960)
. .
T Consensus 168 ------------------------------------------------~-~----------------------------- 169 (328)
T cd02660 168 ------------------------------------------------G-E----------------------------- 169 (328)
T ss_pred ------------------------------------------------c-c-----------------------------
Confidence 0 0
Q ss_pred CCCcCCCCCCeEEEEecChhhHHhhhhhhhhhhhhhcccccccCCCCCCCCHHHHHHHhhCccccCCCCCCCCccccCcc
Q 002138 739 PLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHW 818 (960)
Q Consensus 739 ~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~dCL~~f~~~E~L~~~d~wyC~~Ck~~~ 818 (960)
.......+|++||+.|+++|.+++.+ |+|++|++++
T Consensus 170 -------------------------------------------~~~~~~~sl~~~L~~~~~~e~~~~~~-~~C~~C~~~~ 205 (328)
T cd02660 170 -------------------------------------------SGVSGTPTLSDCLDRFTRPEKLGDFA-YKCSGCGSTQ 205 (328)
T ss_pred -------------------------------------------cCCCCCCCHHHHHHHhcCccccCCCC-ccCCCCCCcc
Confidence 00003469999999999999998877 9999999999
Q ss_pred eeEEEEEeeeCCCeEEEEEEeeEecc-cccccCCeeeeccCCCCCCCCcccc--------CCCCCCccEEEEEEEEeecC
Q 002138 819 QASKKLDLWRSPDILVIHLKRFSFSR-YFKSKLDTYVDFPIDDLDLSNYVCC--------KNSQLSNRYVLYAISNHYGG 889 (960)
Q Consensus 819 ~AtKk~~l~~lP~iLiIhLKRF~~~~-~~~~Ki~~~V~FPi~~LDls~~v~~--------~~~~~~~~YdL~AVinH~G~ 889 (960)
.|.|++.|.++|++|+||||||.|+. +...|+.+.|.||. .|||++|+.. .....+..|+|+|||+|.|+
T Consensus 206 ~~~~~~~i~~lP~~Lii~lkRf~~~~~~~~~K~~~~v~fp~-~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~ 284 (328)
T cd02660 206 EATKQLSIKKLPPVLCFQLKRFEHSLNKTSRKIDTYVQFPL-ELNMTPYTSSSIGDTQDSNSLDPDYTYDLFAVVVHKGT 284 (328)
T ss_pred ceEEEEEecCCCceeEEEEEeEEecCCCCCcCCCcEEeCCC-EechhhhcccccccccccccCCCCceEEEEEEEEeecc
Confidence 99999999999999999999999987 55689999999994 8999999984 22336789999999999999
Q ss_pred CCCCeEEEEEeccccchhhhhhhhhccccccccCCCcEEEEcCCcceecCcccccCCCeEEEEEE
Q 002138 890 MGGGHYTAFVDIDYHSAFKQYEYLKTQITSVQLGHKRWFEFDDDRVYPVSEDNIKTSAAYVLFYK 954 (960)
Q Consensus 890 l~gGHYtAy~k~~~~~~~~~~~~~~~~~~~~~~~~~~Wy~fdDs~Vs~vs~~~v~s~~AYvLFY~ 954 (960)
.++||||||+|. .+++||+|||+.|+++++++|...+||||||.
T Consensus 285 ~~~GHY~~~~~~---------------------~~~~W~~~nD~~V~~~~~~~v~~~~ayil~Y~ 328 (328)
T cd02660 285 LDTGHYTAYCRQ---------------------GDGQWFKFDDAMITRVSEEEVLKSQAYLLFYH 328 (328)
T ss_pred CCCCcEEEEEEC---------------------CCCcEEEEECCeeEECCHHHhcCCCcEEEEeC
Confidence 999999999998 35899999999999999999999999999994
No 8
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.4e-58 Score=515.96 Aligned_cols=299 Identities=29% Similarity=0.445 Sum_probs=242.3
Q ss_pred ccccccccccccCCCccchHHHHHHHhcChHHHHHHHhccccccccCCCCCCchHHHHHHHHHHHHhcCCCCCccChHHH
Q 002138 333 GVCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMF 412 (960)
Q Consensus 333 ~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~al~~L~~~l~~~~~~~i~P~~f 412 (960)
+....|++||.|+||||||||+||||+|+|+|++++.... +.......+ ..+..++..++......++|..|
T Consensus 18 ~~~~~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~-------~~~~~~~~~-q~~~~~l~~~~~~~~~~~~P~~~ 89 (332)
T cd02671 18 RENLLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLV-------SLISSVEQL-QSSFLLNPEKYNDELANQAPRRL 89 (332)
T ss_pred cccCCCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhh-------cccCcHHHH-HHHHHHHHHHHhhcccccCHHHH
Confidence 3457899999999999999999999999999999886432 111111111 22223445555555556789999
Q ss_pred HHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCccccccceEE
Q 002138 413 KLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQY 492 (960)
Q Consensus 413 ~~~l~~~~~~F~~~~QQDA~EfL~~LLd~L~eel~~~~~kp~~e~~d~~~~~~~~~a~e~w~~~~~~n~SiI~~lF~G~~ 492 (960)
+.++++.+|.|.++.||||||||.+|||.||+ +|.++|+|++
T Consensus 90 ~~~l~~~~~~f~~~~QQDA~EFl~~LLd~L~~--------------------------------------~i~~~F~g~~ 131 (332)
T cd02671 90 LNALREVNPMYEGYLQHDAQEVLQCILGNIQE--------------------------------------LVEKDFQGQL 131 (332)
T ss_pred HHHHHHhccccCCccccCHHHHHHHHHHHHHH--------------------------------------HHHhhhceEE
Confidence 99999999999999999999999999999982 3778999999
Q ss_pred EEEEeeCCCCCeeeeecCCeeEEecCCCCCccceEEEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhcccCCcccee
Q 002138 493 RSMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLL 572 (960)
Q Consensus 493 ~s~l~C~~C~~~S~~~epf~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~ 572 (960)
+++++|..|++++.++|+|++|+||||........
T Consensus 132 ~~~~~C~~C~~~s~~~E~f~~lsL~i~~~~~~~~~--------------------------------------------- 166 (332)
T cd02671 132 VLRTRCLECETFTERREDFQDISVPVQESELSKSE--------------------------------------------- 166 (332)
T ss_pred EEEEEeCCCCCeeceecccEEEEEEeCCCcccccc---------------------------------------------
Confidence 99999999999999999999999999854210000
Q ss_pred eeeeeccceeeecCCCccccccccCCCcEEEEEcCCCCCCCceEEeeeeccccccccccccccceeeccceEEecCCCCC
Q 002138 573 VAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTN 652 (960)
Q Consensus 573 ~~e~~~~~~~~~~~~~~~~~~~I~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~ 652 (960)
.. + .
T Consensus 167 ---------------~~---~------~---------------------------------------------------- 170 (332)
T cd02671 167 ---------------ES---S------E---------------------------------------------------- 170 (332)
T ss_pred ---------------cc---c------c----------------------------------------------------
Confidence 00 0 0
Q ss_pred hhHHHHHHHHhcCCCcCCCCCCCCcccccccCCCCCCccccccccccCCCCCCCCCCcCCCCCCCCCCceEEEecCCCCc
Q 002138 653 GSDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPT 732 (960)
Q Consensus 653 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (960)
. . .
T Consensus 171 ----------------------------------------------~-------~-~----------------------- 173 (332)
T cd02671 171 ----------------------------------------------I-------S-P----------------------- 173 (332)
T ss_pred ----------------------------------------------c-------c-c-----------------------
Confidence 0 0 0
Q ss_pred ccccCCCCCcCCCCCCeEEEEecChhhHHhhhhhhhhhhhhhcccccccCCCCCCCCHHHHHHHhhCccccCCCCCCCCc
Q 002138 733 EIKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCP 812 (960)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~dCL~~f~~~E~L~~~d~wyC~ 812 (960)
.......+|++||+.|+++|.|.++|.|+|+
T Consensus 174 -------------------------------------------------~~~~~~~tL~~~L~~f~~~E~l~g~n~y~C~ 204 (332)
T cd02671 174 -------------------------------------------------DPKTEMKTLKWAISQFASVERIVGEDKYFCE 204 (332)
T ss_pred -------------------------------------------------ccccccCCHHHHHHHhCCcceecCCCCeeCC
Confidence 0000235899999999999999999999999
Q ss_pred cccCcceeEEEEEeeeCCCeEEEEEEeeEecc------cccccCCeeeeccCCCCCCCCccccCCCCCCccEEEEEEEEe
Q 002138 813 RCKKHWQASKKLDLWRSPDILVIHLKRFSFSR------YFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNH 886 (960)
Q Consensus 813 ~Ck~~~~AtKk~~l~~lP~iLiIhLKRF~~~~------~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~AVinH 886 (960)
+|+..+.|+|++.|+++|+||+||||||.++. ....|+++.|.||+ .|||.+|.... ....|+|+|||+|
T Consensus 205 ~C~~~~~a~k~~~~~~~P~vL~i~LkRF~~~~~~~~~~~~~~Ki~~~v~fp~-~L~~~~~~~~~---~~~~Y~L~~VI~H 280 (332)
T cd02671 205 NCHHYTEAERSLLFDKLPEVITIHLKCFAANGSEFDCYGGLSKVNTPLLTPL-KLSLEEWSTKP---KNDVYRLFAVVMH 280 (332)
T ss_pred CCCCceeEEEEEEEecCCCEEEEEeeeeccccccccccCCceecCccccCcc-ccccccccCCC---CCCeEEEEEEEEE
Confidence 99999999999999999999999999999874 24679999999996 89999887543 4589999999999
Q ss_pred ec-CCCCCeEEEEEeccccchhhhhhhhhccccccccCCCcEEEEcCCcceecCccccc---------CCCeEEEEEE
Q 002138 887 YG-GMGGGHYTAFVDIDYHSAFKQYEYLKTQITSVQLGHKRWFEFDDDRVYPVSEDNIK---------TSAAYVLFYK 954 (960)
Q Consensus 887 ~G-~l~gGHYtAy~k~~~~~~~~~~~~~~~~~~~~~~~~~~Wy~fdDs~Vs~vs~~~v~---------s~~AYvLFY~ 954 (960)
.| ++++|||+||+| ||+|||+.|++++++++. +..||||||+
T Consensus 281 ~G~~~~~GHY~a~vr--------------------------W~~fdD~~V~~~~~~~~~~~~~~~~~~~~~aYiLfY~ 332 (332)
T cd02671 281 SGATISSGHYTAYVR--------------------------WLLFDDSEVKVTEEKDFLEALSPNTSSTSTPYLLFYK 332 (332)
T ss_pred cCCCCCCCeEEEEEE--------------------------EEEEcCcceEEccHHHHHhhcCCCCCCCCceEEEEEC
Confidence 99 699999999994 999999999999876654 4689999995
No 9
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.1e-59 Score=511.52 Aligned_cols=273 Identities=36% Similarity=0.616 Sum_probs=233.2
Q ss_pred ccccCCCccchHHHHHHHhcChHHHHHHHhccccccccCCCCCCchHHHHHHHHHHHHhcCCCCCccChHHHHHHHhhcC
Q 002138 341 GLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKLKLANFA 420 (960)
Q Consensus 341 GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~al~~L~~~l~~~~~~~i~P~~f~~~l~~~~ 420 (960)
||.|+||||||||+||||+|+|+|+++|++ +|..|+..++...
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~-------------------------------------~P~~~~~~l~~~~ 43 (279)
T cd02667 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE-------------------------------------TPKELFSQVCRKA 43 (279)
T ss_pred CCcCCCCchHHHHHHHHHhcCHHHHHHHHH-------------------------------------CHHHHHHHHHHhh
Confidence 999999999999999999999999999864 7888899998889
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCccccccceEEEEEEeeCC
Q 002138 421 PQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVCPV 500 (960)
Q Consensus 421 ~~F~~~~QQDA~EfL~~LLd~L~eel~~~~~kp~~e~~d~~~~~~~~~a~e~w~~~~~~n~SiI~~lF~G~~~s~l~C~~ 500 (960)
|.|.+++||||||||.+|||.|| ++|.++|.|++.++++|..
T Consensus 44 ~~f~~~~QqDA~Efl~~lld~l~--------------------------------------~~i~~~F~G~~~~~i~C~~ 85 (279)
T cd02667 44 PQFKGYQQQDSHELLRYLLDGLR--------------------------------------TFIDSIFGGELTSTIMCES 85 (279)
T ss_pred HhhcCCchhhHHHHHHHHHHHHH--------------------------------------HhhhhhcceEEEEEEEcCC
Confidence 99999999999999999999998 2478899999999999999
Q ss_pred CCCeeeeecCCeeEEecCCCCCccceEEEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhcccCCccceeeeeeeccc
Q 002138 501 CNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYRSK 580 (960)
Q Consensus 501 C~~~S~~~epf~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~e~~~~~ 580 (960)
|++++.+.|+|+.|+||+|....
T Consensus 86 C~~~s~~~E~f~~L~Lp~~~~~~--------------------------------------------------------- 108 (279)
T cd02667 86 CGTVSLVYEPFLDLSLPRSDEIK--------------------------------------------------------- 108 (279)
T ss_pred CCCEeCccccceEEecCCCcccC---------------------------------------------------------
Confidence 99999999999999988652100
Q ss_pred eeeecCCCccccccccCCCcEEEEEcCCCCCCCceEEeeeeccccccccccccccceeeccceEEecCCCCChhHHHHHH
Q 002138 581 IFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNGSDIRKLF 660 (960)
Q Consensus 581 ~~~~~~~~~~~~~~I~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~l~~~~ 660 (960)
T Consensus 109 -------------------------------------------------------------------------------- 108 (279)
T cd02667 109 -------------------------------------------------------------------------------- 108 (279)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCCCcCCCCCCCCcccccccCCCCCCccccccccccCCCCCCCCCCcCCCCCCCCCCceEEEecCCCCcccccCCCC
Q 002138 661 LKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTEIKMNEPL 740 (960)
Q Consensus 661 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (960)
T Consensus 109 -------------------------------------------------------------------------------- 108 (279)
T cd02667 109 -------------------------------------------------------------------------------- 108 (279)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCCCCCCeEEEEecChhhHHhhhhhhhhhhhhhcccccccCCCCCCCCHHHHHHHhhCccccCCCCCCCCccccCccee
Q 002138 741 SISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQA 820 (960)
Q Consensus 741 ~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~dCL~~f~~~E~L~~~d~wyC~~Ck~~~~A 820 (960)
..++|++||+.|+++|.|.+++.|+|++|++ |
T Consensus 109 ---------------------------------------------~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~---a 140 (279)
T cd02667 109 ---------------------------------------------SECSIESCLKQFTEVEILEGNNKFACENCTK---A 140 (279)
T ss_pred ---------------------------------------------CCCCHHHHHHhhcCeeEecCCCcccCCccCc---e
Confidence 1358999999999999999999999999987 9
Q ss_pred EEEEEeeeCCCeEEEEEEeeEeccc-ccccCCeeeeccCCCCCCCCccccCC----CCCCccEEEEEEEEeecCCCCCeE
Q 002138 821 SKKLDLWRSPDILVIHLKRFSFSRY-FKSKLDTYVDFPIDDLDLSNYVCCKN----SQLSNRYVLYAISNHYGGMGGGHY 895 (960)
Q Consensus 821 tKk~~l~~lP~iLiIhLKRF~~~~~-~~~Ki~~~V~FPi~~LDls~~v~~~~----~~~~~~YdL~AVinH~G~l~gGHY 895 (960)
+|+..|+++|+||+||||||.++.. ...|+++.|.|| +.|||++|+..+. ......|+|+|||+|.|+..+|||
T Consensus 141 ~k~~~i~~~P~~Lii~LkRF~~~~~~~~~Ki~~~v~fP-~~Ldl~~~~~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~GHY 219 (279)
T cd02667 141 KKQYLISKLPPVLVIHLKRFQQPRSANLRKVSRHVSFP-EILDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGTMRSGHY 219 (279)
T ss_pred eeEeEhhhCCCeEEEEEeccccCcccCceecCceEeCC-CccchhhccCccccccccCCCceEEEEEEEEEeCCCCCCEe
Confidence 9999999999999999999999854 578999999999 6999999997622 235689999999999998899999
Q ss_pred EEEEeccccchhhhhh-hhhccccccccCCCcEEEEcCCcceecCcccccCCCeEEEEEE
Q 002138 896 TAFVDIDYHSAFKQYE-YLKTQITSVQLGHKRWFEFDDDRVYPVSEDNIKTSAAYVLFYK 954 (960)
Q Consensus 896 tAy~k~~~~~~~~~~~-~~~~~~~~~~~~~~~Wy~fdDs~Vs~vs~~~v~s~~AYvLFY~ 954 (960)
+||+|........... ...+........+++||+|||+.|+++++++|.+.+||||||+
T Consensus 220 ~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~dD~~V~~v~~~~v~~~~aYiLfYe 279 (279)
T cd02667 220 VAYVKVRPPQQRLSDLTKSKPAADEAGPGSGQWYYISDSDVREVSLEEVLKSEAYLLFYE 279 (279)
T ss_pred EEEEEcCccccccccccccccccccCCCCCCcEEEEECCccEECCHHHhccCCcEEEEeC
Confidence 9999983211100000 0011112223457899999999999999999999999999996
No 10
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.3e-58 Score=537.82 Aligned_cols=306 Identities=30% Similarity=0.446 Sum_probs=254.4
Q ss_pred cccccccccccCCCccchHHHHHHHhcChHHHHHHHhccccccccCCCCCCchHHHHHHHHHHHHhcCCC--CCccChHH
Q 002138 334 VCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPG--GIPVAPRM 411 (960)
Q Consensus 334 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~al~~L~~~l~~~~--~~~i~P~~ 411 (960)
...+|++||.|+||||||||+||||+|+|+||++|+...... +. .....+++.+|+.+++++|++. ..+++|..
T Consensus 114 ~~~~G~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~-~~---~~~~~~l~~~l~~l~~kl~~~~~~~~~isP~~ 189 (440)
T cd02669 114 PYLPGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYE-NI---KDRKSELVKRLSELIRKIWNPRNFKGHVSPHE 189 (440)
T ss_pred CccCCccCccCCCCchHHHHHHHHHHCCHHHHHHHhhccccc-cc---cCCCcHHHHHHHHHHHHHhccccCCCccCHHH
Confidence 457899999999999999999999999999999998642211 00 1234579999999999999865 47899999
Q ss_pred HHHHHhhcC-CCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCccccccce
Q 002138 412 FKLKLANFA-PQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQG 490 (960)
Q Consensus 412 f~~~l~~~~-~~F~~~~QQDA~EfL~~LLd~L~eel~~~~~kp~~e~~d~~~~~~~~~a~e~w~~~~~~n~SiI~~lF~G 490 (960)
|..+++... +.|.+++||||||||.+|||.||+++++.. .++.++|.++|+|
T Consensus 190 fl~~l~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~l~~~~---------------------------~~~~~ii~~~F~G 242 (440)
T cd02669 190 LLQAVSKVSKKKFSITEQSDPVEFLSWLLNTLHKDLGGSK---------------------------KPNSSIIHDCFQG 242 (440)
T ss_pred HHHHHHhhcccccCCcccCCHHHHHHHHHHHHHHHhccCC---------------------------CCCCCcceeccCc
Confidence 999998764 579999999999999999999999986431 2356899999999
Q ss_pred EEEEEEeeCCCC---------------CeeeeecCCeeEEecCCCCCccceEEEEEccCCCCCCcceeEEeCCCCchHHH
Q 002138 491 QYRSMLVCPVCN---------------KVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDL 555 (960)
Q Consensus 491 ~~~s~l~C~~C~---------------~~S~~~epf~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl 555 (960)
+++++++|..|. .++.+++||++|+|+||.....
T Consensus 243 ~l~~~~~c~~~~~~~~~~~~~~~~c~~~~s~~~~pF~~LsLdip~~~~~------------------------------- 291 (440)
T cd02669 243 KVQIETQKIKPHAEEEGSKDKFFKDSRVKKTSVSPFLLLTLDLPPPPLF------------------------------- 291 (440)
T ss_pred eEEEEEEeecccccccccccccccccccceeeeccceEEEecCCCCccc-------------------------------
Confidence 999999987654 3577899999999999854210
Q ss_pred HHHHHhhcccCCccceeeeeeeccceeeecCCCccccccccCCCcEEEEEcCCCCCCCceEEeeeecccccccccccccc
Q 002138 556 IDALSTKCFLRNHEKLLVAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLE 635 (960)
Q Consensus 556 ~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~I~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (960)
.+..
T Consensus 292 ------------------------------~~~~---------------------------------------------- 295 (440)
T cd02669 292 ------------------------------KDGN---------------------------------------------- 295 (440)
T ss_pred ------------------------------cccc----------------------------------------------
Confidence 0000
Q ss_pred ceeeccceEEecCCCCChhHHHHHHHHhcCCCcCCCCCCCCcccccccCCCCCCccccccccccCCCCCCCCCCcCCCCC
Q 002138 636 WKIFGTPLVGRLSDLTNGSDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEP 715 (960)
Q Consensus 636 ~~~fg~P~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (960)
..+
T Consensus 296 ---------------------------------------------------------------------~~~-------- 298 (440)
T cd02669 296 ---------------------------------------------------------------------EEN-------- 298 (440)
T ss_pred ---------------------------------------------------------------------ccc--------
Confidence 000
Q ss_pred CCCCCceEEEecCCCCcccccCCCCCcCCCCCCeEEEEecChhhHHhhhhhhhhhhhhhcccccccCCCCCCCCHHHHHH
Q 002138 716 HLSDDFQFYRLDSIRPTEIKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLE 795 (960)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~dCL~ 795 (960)
.+ +.++|++||+
T Consensus 299 ------------------------------------------------------~l--------------~~~~l~e~L~ 310 (440)
T cd02669 299 ------------------------------------------------------II--------------PQVPLKQLLK 310 (440)
T ss_pred ------------------------------------------------------cc--------------CcccHHHHHH
Confidence 00 2368999997
Q ss_pred HhhCccccCCCCCCCCccccCcceeEEEEEeeeCCCeEEEEEEeeEecccccccCCeeeeccCCCCCCCCccccCC--CC
Q 002138 796 AFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLSNYVCCKN--SQ 873 (960)
Q Consensus 796 ~f~~~E~L~~~d~wyC~~Ck~~~~AtKk~~l~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~~~~--~~ 873 (960)
. |.|+.|+..+.|+|++.|++||+|||||||||.++.+.+.|+.+.|+||++.|||++|+..+. ..
T Consensus 311 k------------y~~~~c~~~~~a~k~~~I~~LP~vLiihLKRF~~~~~~~~K~~t~V~FP~~~LDm~~y~~~~~~~~~ 378 (440)
T cd02669 311 K------------YDGKTETELKDSLKRYLISRLPKYLIFHIKRFSKNNFFKEKNPTIVNFPIKNLDLSDYVHFDKPSLN 378 (440)
T ss_pred h------------cCCccceecccceEEEEEeeCCcEEEEEEecccCCCCccccCCCEEECCCCccchhhhhCccccccC
Confidence 6 457788888999999999999999999999999988788999999999986799999996432 23
Q ss_pred CCccEEEEEEEEeecCC-CCCeEEEEEeccccchhhhhhhhhccccccccCCCcEEEEcCCcceecCcccccCCCeEEEE
Q 002138 874 LSNRYVLYAISNHYGGM-GGGHYTAFVDIDYHSAFKQYEYLKTQITSVQLGHKRWFEFDDDRVYPVSEDNIKTSAAYVLF 952 (960)
Q Consensus 874 ~~~~YdL~AVinH~G~l-~gGHYtAy~k~~~~~~~~~~~~~~~~~~~~~~~~~~Wy~fdDs~Vs~vs~~~v~s~~AYvLF 952 (960)
.+..|+|+|||+|.|++ ++|||+||+|+ ..+++||+|||+.|+++++++|..++|||||
T Consensus 379 ~~~~Y~L~avI~H~G~~~~sGHY~a~v~~--------------------~~~~~W~~fdD~~V~~v~~~~v~~~eaYll~ 438 (440)
T cd02669 379 LSTKYNLVANIVHEGTPQEDGTWRVQLRH--------------------KSTNKWFEIQDLNVKEVLPQLIFLSESYIQI 438 (440)
T ss_pred CCceEEEEEEEEEeccCCCCeeEEEEEEc--------------------CCCCeEEEEECCeeeEcCHHHhccCCceEEE
Confidence 56899999999999987 99999999998 5689999999999999999999999999999
Q ss_pred EE
Q 002138 953 YK 954 (960)
Q Consensus 953 Y~ 954 (960)
|+
T Consensus 439 Y~ 440 (440)
T cd02669 439 WE 440 (440)
T ss_pred eC
Confidence 96
No 11
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.4e-58 Score=516.65 Aligned_cols=298 Identities=28% Similarity=0.454 Sum_probs=242.4
Q ss_pred ccccCCCccchHHHHHHHhcChHHHHHHHhccccccccCCCCCCchHHHHHHHHHHHHhcCCCCCccChHH-HHHHHhhc
Q 002138 341 GLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRM-FKLKLANF 419 (960)
Q Consensus 341 GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~al~~L~~~l~~~~~~~i~P~~-f~~~l~~~ 419 (960)
||.|+||||||||+||||+++|+||+++++...... .....+..+|+.|+..|......++.|.. |..++.
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~~------~~~~~~~~~L~~lf~~l~~~~~~~~~~~~~~l~~~~-- 72 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRL------GDSQSVMKKLQLLQAHLMHTQRRAEAPPDYFLEASR-- 72 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCcccc------CCcchHHHHHHHHHHHHhhcCCcccCCHHHHHHHhc--
Confidence 899999999999999999999999999986532211 11235778899999888666666777776 665543
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCccccccceEEEEEEeeC
Q 002138 420 APQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVCP 499 (960)
Q Consensus 420 ~~~F~~~~QQDA~EfL~~LLd~L~eel~~~~~kp~~e~~d~~~~~~~~~a~e~w~~~~~~n~SiI~~lF~G~~~s~l~C~ 499 (960)
.+.|..++|||||||+.+||+.|+ ++|.++|+|++.++++|.
T Consensus 73 ~~~f~~~~QqDa~EFl~~lLd~l~--------------------------------------~~i~~~F~G~~~~~i~C~ 114 (327)
T cd02664 73 PPWFTPGSQQDCSEYLRYLLDRLH--------------------------------------TLIEKMFGGKLSTTIRCL 114 (327)
T ss_pred ccccCCCCcCCHHHHHHHHHHHHH--------------------------------------HHHHhhCcEEeEeEEEcC
Confidence 578999999999999999999998 137899999999999999
Q ss_pred CCCCeeeeecCCeeEEecCCCCCccceEEEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhcccCCccceeeeeeecc
Q 002138 500 VCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYRS 579 (960)
Q Consensus 500 ~C~~~S~~~epf~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~e~~~~ 579 (960)
.|++++.+.|+|..|+|+||
T Consensus 115 ~C~~~s~~~e~f~~l~L~i~------------------------------------------------------------ 134 (327)
T cd02664 115 NCNSTSARTERFRDLDLSFP------------------------------------------------------------ 134 (327)
T ss_pred CCCCEecccccceeeecCCC------------------------------------------------------------
Confidence 99999999999999998775
Q ss_pred ceeeecCCCccccccccCCCcEEEEEcCCCCCCCceEEeeeeccccccccccccccceeeccceEEecCCCCChhHHHHH
Q 002138 580 KIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNGSDIRKL 659 (960)
Q Consensus 580 ~~~~~~~~~~~~~~~I~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~l~~~ 659 (960)
T Consensus 135 -------------------------------------------------------------------------------- 134 (327)
T cd02664 135 -------------------------------------------------------------------------------- 134 (327)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcCCCcCCCCCCCCcccccccCCCCCCccccccccccCCCCCCCCCCcCCCCCCCCCCceEEEecCCCCcccccCCC
Q 002138 660 FLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTEIKMNEP 739 (960)
Q Consensus 660 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (960)
T Consensus 135 -------------------------------------------------------------------------------- 134 (327)
T cd02664 135 -------------------------------------------------------------------------------- 134 (327)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCCCCCCeEEEEecChhhHHhhhhhhhhhhhhhcccccccCCCCCCCCHHHHHHHhhCccccCCCCCCCCccccCcce
Q 002138 740 LSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQ 819 (960)
Q Consensus 740 ~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~dCL~~f~~~E~L~~~d~wyC~~Ck~~~~ 819 (960)
+|++||+.|+++|.|.++|.|+|++|++++.
T Consensus 135 -------------------------------------------------sl~~~l~~~~~~E~l~g~n~~~C~~C~~~~~ 165 (327)
T cd02664 135 -------------------------------------------------SVQDLLNYFLSPEKLTGDNQYYCEKCASLQD 165 (327)
T ss_pred -------------------------------------------------CHHHHHHHhcCeeEccCCCceeCCccCCccc
Confidence 3568999999999999999999999999999
Q ss_pred eEEEEEeeeCCCeEEEEEEeeEecc--cccccCCeeeeccCCCCCCCCccccC------------------CCCCCccEE
Q 002138 820 ASKKLDLWRSPDILVIHLKRFSFSR--YFKSKLDTYVDFPIDDLDLSNYVCCK------------------NSQLSNRYV 879 (960)
Q Consensus 820 AtKk~~l~~lP~iLiIhLKRF~~~~--~~~~Ki~~~V~FPi~~LDls~~v~~~------------------~~~~~~~Yd 879 (960)
|+|++.|.++|+|||||||||.|+. +.+.||.+.|.|| ..|||.+|+... ....+..|+
T Consensus 166 a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp-~~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~ 244 (327)
T cd02664 166 AEKEMKVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSIN-EVLSLPVRVESKSSESPLEKKEEESGDDGELVTRQVHYR 244 (327)
T ss_pred eeEEEEcccCChhhEEEeeeeEEccccCcceecCceEecC-CEEecCccccccccccccccccccccccccccCCCceEE
Confidence 9999999999999999999999985 3468999999999 589999997421 112467899
Q ss_pred EEEEEEeec-CCCCCeEEEEEeccccchhhhhhhhhccccccccCCCcEEEEcCCcceecCcccccC-------CCeEEE
Q 002138 880 LYAISNHYG-GMGGGHYTAFVDIDYHSAFKQYEYLKTQITSVQLGHKRWFEFDDDRVYPVSEDNIKT-------SAAYVL 951 (960)
Q Consensus 880 L~AVinH~G-~l~gGHYtAy~k~~~~~~~~~~~~~~~~~~~~~~~~~~Wy~fdDs~Vs~vs~~~v~s-------~~AYvL 951 (960)
|+|||+|.| ++++||||||+|.+...+........-........+++||+|||+.|+++++++|.+ ..||||
T Consensus 245 L~~Vi~H~G~~~~~GHY~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~~~~~~v~~~~~~~~~~~aYlL 324 (327)
T cd02664 245 LYAVVVHSGYSSESGHYFTYARDQTDADSTGQECPEPKDAEENDESKNWYLFNDSRVTFSSFESVQNVTSRFPKDTPYIL 324 (327)
T ss_pred EEEEEEEccCCCCCcceEEEEecCCccccccccccccccccccCCCCCEEEEeCCceEECCHHHHHHhhCCCCCCCEEEE
Confidence 999999999 699999999999832100000000000001112346899999999999999999875 899999
Q ss_pred EEE
Q 002138 952 FYK 954 (960)
Q Consensus 952 FY~ 954 (960)
|||
T Consensus 325 fY~ 327 (327)
T cd02664 325 FYE 327 (327)
T ss_pred EeC
Confidence 996
No 12
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-58 Score=541.68 Aligned_cols=344 Identities=44% Similarity=0.709 Sum_probs=295.4
Q ss_pred cccccccccccCCCccchHHHHHHHhcChHHHHHHHh-ccccccccCCCCCCchHHHHHHHHHHHHhcCC-CCCccChHH
Q 002138 334 VCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLG-DYQKEINYENPLGLNGELALAFGDLLRKLWAP-GGIPVAPRM 411 (960)
Q Consensus 334 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~-~~~~~~~~~n~~~~~~~l~~al~~L~~~l~~~-~~~~i~P~~ 411 (960)
....+.+||.|+|||||||++||||+.|+.|+..++. .|.+.++..+..+ ...+..++..++.++|.. ...++.|+.
T Consensus 296 ~~~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~-~~~l~~~~~~~l~~~~~~~~~~s~~P~~ 374 (653)
T KOG1868|consen 296 TDVFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFG-AEELESACAKLLQKLWHGHGQFSVLPRR 374 (653)
T ss_pred ccccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCCccc-chhHHHHHHHhhhhhccCCCceecCcHH
Confidence 4568999999999999999999999999999977775 5777777444433 456777777777777665 667899999
Q ss_pred HHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCC-Ccccc-----CCCCCChHHHHHHHHHhhhccCCCccc
Q 002138 412 FKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKP-YLEAK-----DAEGQPEEEVAEEYWRNHRARNDSIIV 485 (960)
Q Consensus 412 f~~~l~~~~~~F~~~~QQDA~EfL~~LLd~L~eel~~~~~kp-~~e~~-----d~~~~~~~~~a~e~w~~~~~~n~SiI~ 485 (960)
|+..+.+..|.|+++.|||||||+.++++.||++++....++ ..... +....++...+...|..+....++.|.
T Consensus 375 f~~~~~~y~~~~~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~s~~~w~~~~~~~d~~i~ 454 (653)
T KOG1868|consen 375 FIRVLKRYSPNFSGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSKKSLAEWLRYLEEEDSKIG 454 (653)
T ss_pred HHHHHhhcccccccccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccchhHHHHHhhccccchHHH
Confidence 999999999999999999999999999999999999865421 11111 111224455566789888888888899
Q ss_pred cccceEEEEEEeeCCCCCeeeeecCCeeEEecCCCCCccceEEEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhccc
Q 002138 486 DLCQGQYRSMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFL 565 (960)
Q Consensus 486 ~lF~G~~~s~l~C~~C~~~S~~~epf~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~ 565 (960)
++|.||+++.++|..|++.|.+|++|++|+||||.....
T Consensus 455 ~lf~gQ~ks~Lkc~~cg~~s~t~~~f~~lslpIp~~~~~----------------------------------------- 493 (653)
T KOG1868|consen 455 DLFVGQLKSYLKCQACGYTSTTFETFTDLSLPIPKKGFA----------------------------------------- 493 (653)
T ss_pred HHHHHHHHhheehhhcCCcceeeecceeeEEeccccccc-----------------------------------------
Confidence 999999999999999999999999999999999853100
Q ss_pred CCccceeeeeeeccceeeecCCCccccccccCCCcEEEEEcCCCCCCCceEEeeeeccccccccccccccceeeccceEE
Q 002138 566 RNHEKLLVAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVG 645 (960)
Q Consensus 566 ~~~~~l~~~e~~~~~~~~~~~~~~~~~~~I~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~ 645 (960)
T Consensus 494 -------------------------------------------------------------------------------- 493 (653)
T KOG1868|consen 494 -------------------------------------------------------------------------------- 493 (653)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCChhHHHHHHHHhcCCCcCCCCCCCCcccccccCCCCCCccccccccccCCCCCCCCCCcCCCCCCCCCCceEEE
Q 002138 646 RLSDLTNGSDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYR 725 (960)
Q Consensus 646 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (960)
T Consensus 494 -------------------------------------------------------------------------------- 493 (653)
T KOG1868|consen 494 -------------------------------------------------------------------------------- 493 (653)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCcccccCCCCCcCCCCCCeEEEEecChhhHHhhhhhhhhhhhhhcccccccCCCCCCCCHHHHHHHhhCccccCC
Q 002138 726 LDSIRPTEIKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGP 805 (960)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~dCL~~f~~~E~L~~ 805 (960)
...++|++|+..||+.|.|++
T Consensus 494 -----------------------------------------------------------~~~~~L~~C~~~ft~~ekle~ 514 (653)
T KOG1868|consen 494 -----------------------------------------------------------GGKVSLEDCLSLFTKEEKLEG 514 (653)
T ss_pred -----------------------------------------------------------ccccchHhhhccccchhhccc
Confidence 012589999999999999999
Q ss_pred CCCCCCccccCcceeE--EEEEeeeCCCeEEEEEEeeEecccccccCCeeeeccCCCCCCCCccccCCCCCCccEEEEEE
Q 002138 806 EDMWYCPRCKKHWQAS--KKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAI 883 (960)
Q Consensus 806 ~d~wyC~~Ck~~~~At--Kk~~l~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~AV 883 (960)
++.|.||+|++.+.++ |++.||+||+|||||||||.+++....|..+.|+||+..+|+.+++..+.. .+..|+||||
T Consensus 515 ~~~w~Cp~c~~~~~~~~lK~~~i~~lp~iLiihL~Rf~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~~~-~~~~Y~L~aV 593 (653)
T KOG1868|consen 515 DEAWLCPRCKHKESSKTLKKLTILRLPKILIIHLKRFSSDGNSFNKLSTGVDFPLREADLSPRFAEKGN-NPKSYRLYAV 593 (653)
T ss_pred ccccCCccccCcccccccceeeeecCCHHHHHHHHHhccCcccccccceeeccchHhhhhchhccccCC-CccceeeEEE
Confidence 9999999999998885 999999999999999999999988889999999999989999998877665 5666999999
Q ss_pred EEeecCCCCCeEEEEEeccccchhhhhhhhhccccccccCCCcEEEEcCCcceecCcccccCCCeEEEEEEEecCC
Q 002138 884 SNHYGGMGGGHYTAFVDIDYHSAFKQYEYLKTQITSVQLGHKRWFEFDDDRVYPVSEDNIKTSAAYVLFYKRVSDV 959 (960)
Q Consensus 884 inH~G~l~gGHYtAy~k~~~~~~~~~~~~~~~~~~~~~~~~~~Wy~fdDs~Vs~vs~~~v~s~~AYvLFY~R~~~~ 959 (960)
+||+|+++||||||||+. ...+.|+.|||+.|+.+++.++.+++||||||.|....
T Consensus 594 v~H~Gtl~sGHYta~~~~--------------------~~~~~W~~fdDs~Vs~~~~~~~~~s~aYIlFY~~~~~~ 649 (653)
T KOG1868|consen 594 VNHSGTLNSGHYTAYVYK--------------------NEKQRWFTFDDSEVSPISETDVGSSSAYILFYERLGIF 649 (653)
T ss_pred EeccCcccCCceEEEEee--------------------cCCCceEEecCeeeeccccccccCCCceEEEeecCCcc
Confidence 999999999999999987 56889999999999999999999999999999998754
No 13
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=9e-57 Score=501.06 Aligned_cols=288 Identities=32% Similarity=0.451 Sum_probs=248.4
Q ss_pred ccccCCCccchHHHHHHHhcChHHHHHHHhccccccccCCCCCCchHHHHHHHHHHHHhcCCCCCccChHHHHHHHhhcC
Q 002138 341 GLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKLKLANFA 420 (960)
Q Consensus 341 GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~al~~L~~~l~~~~~~~i~P~~f~~~l~~~~ 420 (960)
||.|+||||||||+||||+++|+|++++++.-... .+......+++.+|+.|+..|+.+. .+++|..|...++...
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~---~~~~~~~~~~~~~l~~L~~~l~~~~-~~i~p~~~~~~l~~~~ 76 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPAR---RGANQSSDNLTNALRDLFDTMDKKQ-EPVPPIEFLQLLRMAF 76 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhccccc---cccccchhHHHHHHHHHHHHHHhCC-CcCCcHHHHHHHHHHC
Confidence 89999999999999999999999999998542110 0122335689999999999998755 4899999999999999
Q ss_pred CCCC------CCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCccccccceEEEE
Q 002138 421 PQFS------GYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRS 494 (960)
Q Consensus 421 ~~F~------~~~QQDA~EfL~~LLd~L~eel~~~~~kp~~e~~d~~~~~~~~~a~e~w~~~~~~n~SiI~~lF~G~~~s 494 (960)
|.|. +++|||||||+.+||+.||++++.. ..+.++|.++|+|++.+
T Consensus 77 ~~f~~~~~~~~~~QqDA~EFl~~lld~L~~~~~~~----------------------------~~~~~~i~~~F~g~~~~ 128 (305)
T cd02657 77 PQFAEKQNQGGYAQQDAEECWSQLLSVLSQKLPGA----------------------------GSKGSFIDQLFGIELET 128 (305)
T ss_pred cCcccccCCCCccccCHHHHHHHHHHHHHHHhccc----------------------------CCCCcHHHHhhceEEEE
Confidence 9994 5699999999999999999998541 12356799999999999
Q ss_pred EEeeCCCC-CeeeeecCCeeEEecCCCCCccceEEEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhcccCCccceee
Q 002138 495 MLVCPVCN-KVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLV 573 (960)
Q Consensus 495 ~l~C~~C~-~~S~~~epf~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~ 573 (960)
+++|..|+ .++.++|+|++|+|+||...
T Consensus 129 ~~~C~~C~~~~~~~~e~f~~Lsl~i~~~~--------------------------------------------------- 157 (305)
T cd02657 129 KMKCTESPDEEEVSTESEYKLQCHISITT--------------------------------------------------- 157 (305)
T ss_pred EEEcCCCCCCCccccccceEEEeecCCCc---------------------------------------------------
Confidence 99999999 89999999999999997420
Q ss_pred eeeeccceeeecCCCccccccccCCCcEEEEEcCCCCCCCceEEeeeeccccccccccccccceeeccceEEecCCCCCh
Q 002138 574 AEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNG 653 (960)
Q Consensus 574 ~e~~~~~~~~~~~~~~~~~~~I~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~ 653 (960)
T Consensus 158 -------------------------------------------------------------------------------- 157 (305)
T cd02657 158 -------------------------------------------------------------------------------- 157 (305)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHhcCCCcCCCCCCCCcccccccCCCCCCccccccccccCCCCCCCCCCcCCCCCCCCCCceEEEecCCCCcc
Q 002138 654 SDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTE 733 (960)
Q Consensus 654 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (960)
T Consensus 158 -------------------------------------------------------------------------------- 157 (305)
T cd02657 158 -------------------------------------------------------------------------------- 157 (305)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCcCCCCCCeEEEEecChhhHHhhhhhhhhhhhhhcccccccCCCCCCCCHHHHHHHhhCccccCCCCCCCCcc
Q 002138 734 IKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPR 813 (960)
Q Consensus 734 ~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~dCL~~f~~~E~L~~~d~wyC~~ 813 (960)
...+|++||+.++++|.. ..|+.
T Consensus 158 ----------------------------------------------------~~~~l~~~L~~~~~~~~~-----~~~~~ 180 (305)
T cd02657 158 ----------------------------------------------------EVNYLQDGLKKGLEEEIE-----KHSPT 180 (305)
T ss_pred ----------------------------------------------------ccccHHHHHHHhhhhhhh-----hcCcc
Confidence 012688999999987764 47999
Q ss_pred ccCcceeEEEEEeeeCCCeEEEEEEeeEeccc--ccccCCeeeeccCCCCCCCCccccCCCCCCccEEEEEEEEeec-CC
Q 002138 814 CKKHWQASKKLDLWRSPDILVIHLKRFSFSRY--FKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYG-GM 890 (960)
Q Consensus 814 Ck~~~~AtKk~~l~~lP~iLiIhLKRF~~~~~--~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~AVinH~G-~l 890 (960)
|+....++|+..|.++|++|+||||||.|+.. ...|+.+.|.|| ..|||++|+. .+..|+|+|||+|.| ++
T Consensus 181 ~~~~~~~~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fP-~~Ldl~~~~~-----~~~~Y~L~~vI~H~G~~~ 254 (305)
T cd02657 181 LGRDAIYTKTSRISRLPKYLTVQFVRFFWKRDIQKKAKILRKVKFP-FELDLYELCT-----PSGYYELVAVITHQGRSA 254 (305)
T ss_pred cCCCceEEEEEEeccCCcEEEEEEECCccccccCceeecCcEEECC-ceEecccccC-----CCCcEEEEEEEEecCCCC
Confidence 99999999999999999999999999999754 467999999999 5999999996 446899999999999 79
Q ss_pred CCCeEEEEEeccccchhhhhhhhhccccccccCCCcEEEEcCCcceecCcccccC-------CCeEEEEEE
Q 002138 891 GGGHYTAFVDIDYHSAFKQYEYLKTQITSVQLGHKRWFEFDDDRVYPVSEDNIKT-------SAAYVLFYK 954 (960)
Q Consensus 891 ~gGHYtAy~k~~~~~~~~~~~~~~~~~~~~~~~~~~Wy~fdDs~Vs~vs~~~v~s-------~~AYvLFY~ 954 (960)
.+|||+||+|. ..+++||+|||+.|+++++++|.. .+|||||||
T Consensus 255 ~~GHY~~~~~~--------------------~~~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~aYiL~Y~ 305 (305)
T cd02657 255 DSGHYVAWVRR--------------------KNDGKWIKFDDDKVSEVTEEDILKLSGGGDWHIAYILLYK 305 (305)
T ss_pred CCcEEEEEEEc--------------------CCCCeEEEEECCceEEeCHHHHHhhcCCCCCceEEEEEEC
Confidence 99999999999 445999999999999999999974 699999996
No 14
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.3e-56 Score=499.15 Aligned_cols=293 Identities=30% Similarity=0.498 Sum_probs=245.4
Q ss_pred ccccCCCccchHHHHHHHhcChHHHHHHHhccccccccCCCCCCchHHHHHHHHHHHHhcCCC--------------CCc
Q 002138 341 GLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPG--------------GIP 406 (960)
Q Consensus 341 GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~al~~L~~~l~~~~--------------~~~ 406 (960)
||.|+||||||||+||||+++|+|+++|+....... .+......++.++|++|+..|++.. ..+
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~--~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 78 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFP--SDVVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVG 78 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhccccC--CCcCCccccHHHHHHHHHHHhcCCCcCCCccccccccccccc
Confidence 899999999999999999999999999986322111 1122235679999999999998643 246
Q ss_pred cChHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCcccc
Q 002138 407 VAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVD 486 (960)
Q Consensus 407 i~P~~f~~~l~~~~~~F~~~~QQDA~EfL~~LLd~L~eel~~~~~kp~~e~~d~~~~~~~~~a~e~w~~~~~~n~SiI~~ 486 (960)
+.|..|+.+++...|.|.++.||||||||.+||+.||+++... ..+.+.+
T Consensus 79 i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~------------------------------~~~~~~~ 128 (311)
T cd02658 79 IKPSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLDRESFKN------------------------------LGLNPND 128 (311)
T ss_pred cCcHHHHHHHhccChhhcccccccHHHHHHHHHHHHHHhhccc------------------------------ccCCchh
Confidence 8999999999999999999999999999999999999987521 1234789
Q ss_pred ccceEEEEEEeeCCCCCeeeeecCCeeEEecCCCCCccceEEEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhcccC
Q 002138 487 LCQGQYRSMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLR 566 (960)
Q Consensus 487 lF~G~~~s~l~C~~C~~~S~~~epf~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~ 566 (960)
+|+|.++++++|..|++++.+.|+|..|+|+||......
T Consensus 129 ~f~~~~~~~i~C~~C~~~s~~~e~~~~lsL~l~~~~~~~----------------------------------------- 167 (311)
T cd02658 129 LFKFMIEDRLECLSCKKVKYTSELSEILSLPVPKDEATE----------------------------------------- 167 (311)
T ss_pred heEEEeeEEEEcCCCCCEEEeecceeEEeeecccccccc-----------------------------------------
Confidence 999999999999999999999999999999998542100
Q ss_pred CccceeeeeeeccceeeecCCCccccccccCCCcEEEEEcCCCCCCCceEEeeeeccccccccccccccceeeccceEEe
Q 002138 567 NHEKLLVAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGR 646 (960)
Q Consensus 567 ~~~~l~~~e~~~~~~~~~~~~~~~~~~~I~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~ 646 (960)
. . .
T Consensus 168 -~-----------------~----------~------------------------------------------------- 170 (311)
T cd02658 168 -K-----------------E----------E------------------------------------------------- 170 (311)
T ss_pred -c-----------------c----------c-------------------------------------------------
Confidence 0 0 0
Q ss_pred cCCCCChhHHHHHHHHhcCCCcCCCCCCCCcccccccCCCCCCccccccccccCCCCCCCCCCcCCCCCCCCCCceEEEe
Q 002138 647 LSDLTNGSDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRL 726 (960)
Q Consensus 647 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (960)
.
T Consensus 171 ------------------------------------------------------------~------------------- 171 (311)
T cd02658 171 ------------------------------------------------------------G------------------- 171 (311)
T ss_pred ------------------------------------------------------------c-------------------
Confidence 0
Q ss_pred cCCCCcccccCCCCCcCCCCCCeEEEEecChhhHHhhhhhhhhhhhhhcccccccCCCCCCCCHHHHHHHhhCccccCCC
Q 002138 727 DSIRPTEIKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPE 806 (960)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~dCL~~f~~~E~L~~~ 806 (960)
......++|++||+.|+.+|.++
T Consensus 172 -------------------------------------------------------~~~~~~~sl~~~L~~~~~~e~i~-- 194 (311)
T cd02658 172 -------------------------------------------------------ELVYEPVPLEDCLKAYFAPETIE-- 194 (311)
T ss_pred -------------------------------------------------------cccCCCCCHHHHHHHHcCccccc--
Confidence 00003469999999999999995
Q ss_pred CCCCCccccCcceeEEEEEeeeCCCeEEEEEEeeEec-ccccccCCeeeeccCCCCCCCCccccCCCCCCccEEEEEEEE
Q 002138 807 DMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFS-RYFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISN 885 (960)
Q Consensus 807 d~wyC~~Ck~~~~AtKk~~l~~lP~iLiIhLKRF~~~-~~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~AVin 885 (960)
++|++|++++.|+|+..|.++|+|||||||||.++ .+...|+++.|.|| ..| .+..|+|+|||+
T Consensus 195 --~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~Ki~~~v~~p-~~l------------~~~~Y~L~~vI~ 259 (311)
T cd02658 195 --DFCSTCKEKTTATKTTGFKTFPDYLVINMKRFQLLENWVPKKLDVPIDVP-EEL------------GPGKYELIAFIS 259 (311)
T ss_pred --ccccCCCCcccEEEEEEeecCCceEEEEeEEEEecCCCceEeeccccccC-CcC------------CCCcEEEEEEEE
Confidence 58999999999999999999999999999999995 45678999999999 455 335799999999
Q ss_pred eec-CCCCCeEEEEEeccccchhhhhhhhhcccccccc--CCCcEEEEcCCcceecCcccccCCCeEEEEEE
Q 002138 886 HYG-GMGGGHYTAFVDIDYHSAFKQYEYLKTQITSVQL--GHKRWFEFDDDRVYPVSEDNIKTSAAYVLFYK 954 (960)
Q Consensus 886 H~G-~l~gGHYtAy~k~~~~~~~~~~~~~~~~~~~~~~--~~~~Wy~fdDs~Vs~vs~~~v~s~~AYvLFY~ 954 (960)
|.| ++++||||||+|. . .+++||.|||+.|+++++.++.+..||||||+
T Consensus 260 H~G~~~~~GHY~~~vk~--------------------~~~~~~~W~~fnD~~V~~~~~~~~~~~~~YilfY~ 311 (311)
T cd02658 260 HKGTSVHSGHYVAHIKK--------------------EIDGEGKWVLFNDEKVVASQDPPEMKKLGYIYFYQ 311 (311)
T ss_pred ccCCCCCCcceEEEEeC--------------------CCCCCCCEEEecCceeEECCcccccCCcceEEEEC
Confidence 999 6999999999998 2 35899999999999999999999999999996
No 15
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=9.6e-56 Score=491.77 Aligned_cols=302 Identities=36% Similarity=0.612 Sum_probs=261.9
Q ss_pred ccccccCCCccchHHHHHHHhcChHHHHHHHhccccccccCCCCCCchHHHHHHHHHHHHhcCCCCCccChHHHHHHHhh
Q 002138 339 LTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKLKLAN 418 (960)
Q Consensus 339 ~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~al~~L~~~l~~~~~~~i~P~~f~~~l~~ 418 (960)
++||.|+||||||||+||+|+|+|+|+++++..-+... ......++.++|..++..++......+.|..|..++..
T Consensus 1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~l~~ 76 (304)
T cd02661 1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKD----CCNEGFCMMCALEAHVERALASSGPGSAPRIFSSNLKQ 76 (304)
T ss_pred CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhh----ccCCcchHHHHHHHHHHHHHhCCCCccChHHHHHHHHH
Confidence 58999999999999999999999999999985321111 11123478999999999998877888999999999999
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCccccccceEEEEEEee
Q 002138 419 FAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVC 498 (960)
Q Consensus 419 ~~~~F~~~~QQDA~EfL~~LLd~L~eel~~~~~kp~~e~~d~~~~~~~~~a~e~w~~~~~~n~SiI~~lF~G~~~s~l~C 498 (960)
..+.|..+.||||+|||.+||+.||+++.....+... ........++|.++|+|+++++++|
T Consensus 77 ~~~~f~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~------------------~~~~~~~~~~i~~~F~g~~~~~~~C 138 (304)
T cd02661 77 ISKHFRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKA------------------VDPSSQETTLVQQIFGGYLRSQVKC 138 (304)
T ss_pred HHHhhcCcchhhHHHHHHHHHHHHHHHHhhhcccccc------------------cCccccCCChhhhcCCcEEeeeEEe
Confidence 9999999999999999999999999887543222110 0112234578999999999999999
Q ss_pred CCCCCeeeeecCCeeEEecCCCCCccceEEEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhcccCCccceeeeeeec
Q 002138 499 PVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYR 578 (960)
Q Consensus 499 ~~C~~~S~~~epf~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~e~~~ 578 (960)
..|++++.++|+|+.|+|+||..
T Consensus 139 ~~C~~~s~~~e~~~~l~l~i~~~--------------------------------------------------------- 161 (304)
T cd02661 139 LNCKHVSNTYDPFLDLSLDIKGA--------------------------------------------------------- 161 (304)
T ss_pred CCCCCCcCccccceeeeeecCCC---------------------------------------------------------
Confidence 99999999999999999988621
Q ss_pred cceeeecCCCccccccccCCCcEEEEEcCCCCCCCceEEeeeeccccccccccccccceeeccceEEecCCCCChhHHHH
Q 002138 579 SKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNGSDIRK 658 (960)
Q Consensus 579 ~~~~~~~~~~~~~~~~I~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~l~~ 658 (960)
T Consensus 162 -------------------------------------------------------------------------------- 161 (304)
T cd02661 162 -------------------------------------------------------------------------------- 161 (304)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCCCcCCCCCCCCcccccccCCCCCCccccccccccCCCCCCCCCCcCCCCCCCCCCceEEEecCCCCcccccCC
Q 002138 659 LFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTEIKMNE 738 (960)
Q Consensus 659 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (960)
T Consensus 162 -------------------------------------------------------------------------------- 161 (304)
T cd02661 162 -------------------------------------------------------------------------------- 161 (304)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcCCCCCCeEEEEecChhhHHhhhhhhhhhhhhhcccccccCCCCCCCCHHHHHHHhhCccccCCCCCCCCccccCcc
Q 002138 739 PLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHW 818 (960)
Q Consensus 739 ~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~dCL~~f~~~E~L~~~d~wyC~~Ck~~~ 818 (960)
.+|++||+.|+.+|.+++++.|+|++|++.+
T Consensus 162 -------------------------------------------------~~l~~~l~~~~~~e~~~~~~~~~C~~C~~~~ 192 (304)
T cd02661 162 -------------------------------------------------DSLEDALEQFTKPEQLDGENKYKCERCKKKV 192 (304)
T ss_pred -------------------------------------------------CcHHHHHHHhcCceeeCCCCCeeCCCCCCcc
Confidence 1588999999999999999999999999999
Q ss_pred eeEEEEEeeeCCCeEEEEEEeeEecccccccCCeeeeccCCCCCCCCccccCCCCCCccEEEEEEEEeec-CCCCCeEEE
Q 002138 819 QASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYG-GMGGGHYTA 897 (960)
Q Consensus 819 ~AtKk~~l~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~AVinH~G-~l~gGHYtA 897 (960)
.|+|+..|.++|++|+|||+||.++ ...|+.+.|.|| +.|||.+|+..... ....|+|+|||+|.| ++++|||+|
T Consensus 193 ~~~~~~~i~~~P~iL~i~l~Rf~~~--~~~Ki~~~v~f~-~~L~l~~~~~~~~~-~~~~Y~L~~vi~H~G~~~~~GHY~~ 268 (304)
T cd02661 193 KASKQLTIHRAPNVLTIHLKRFSNF--RGGKINKQISFP-ETLDLSPYMSQPND-GPLKYKLYAVLVHSGFSPHSGHYYC 268 (304)
T ss_pred ceEEEEEEecCCcEEEEEEeccccC--CccccCCeEecC-CeechhhccccCCC-CCceeeEEEEEEECCCCCCCcCCEE
Confidence 9999999999999999999999988 567999999999 69999999986443 678999999999999 459999999
Q ss_pred EEeccccchhhhhhhhhccccccccCCCcEEEEcCCcceecCcccccCCCeEEEEE
Q 002138 898 FVDIDYHSAFKQYEYLKTQITSVQLGHKRWFEFDDDRVYPVSEDNIKTSAAYVLFY 953 (960)
Q Consensus 898 y~k~~~~~~~~~~~~~~~~~~~~~~~~~~Wy~fdDs~Vs~vs~~~v~s~~AYvLFY 953 (960)
|+|. .+++||+|||+.|+++++++|.+..||||||
T Consensus 269 ~~~~---------------------~~~~W~~~nD~~V~~v~~~~v~~~~aYil~Y 303 (304)
T cd02661 269 YVKS---------------------SNGKWYNMDDSKVSPVSIETVLSQKAYILFY 303 (304)
T ss_pred EEEC---------------------CCCCEEEEeCCeeEECCHHHhcCCCcEEEEe
Confidence 9997 4789999999999999999999999999999
No 16
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.5e-55 Score=497.51 Aligned_cols=300 Identities=28% Similarity=0.482 Sum_probs=254.1
Q ss_pred cccccccCCCccchHHHHHHHhcChHHHHHHHhccccccccCCCCCCchHHHHHHHHHHHHhcCCCCCccChHHHHHHHh
Q 002138 338 GLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKLKLA 417 (960)
Q Consensus 338 g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~al~~L~~~l~~~~~~~i~P~~f~~~l~ 417 (960)
|++||.|+||||||||+||||+++|+|++++++.... .......++..+|+.|+..|.......+.|..+.....
T Consensus 1 g~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~-----~~~~~~~~~~~~l~~lf~~~~~~~~~~~~~~~~~~~~~ 75 (334)
T cd02659 1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPT-----EDDDDNKSVPLALQRLFLFLQLSESPVKTTELTDKTRS 75 (334)
T ss_pred CCCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCc-----ccCcccccHHHHHHHHHHHHHhCCccccCcchhheecc
Confidence 7899999999999999999999999999999864211 11112356899999999999877666666666542222
Q ss_pred hcCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCccccccceEEEEEEe
Q 002138 418 NFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLV 497 (960)
Q Consensus 418 ~~~~~F~~~~QQDA~EfL~~LLd~L~eel~~~~~kp~~e~~d~~~~~~~~~a~e~w~~~~~~n~SiI~~lF~G~~~s~l~ 497 (960)
...+.|..++|||||||+.+||+.|+++++.. ...++|.++|+|.+..+++
T Consensus 76 ~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~-----------------------------~~~~~i~~lF~g~~~~~~~ 126 (334)
T cd02659 76 FGWDSLNTFEQHDVQEFFRVLFDKLEEKLKGT-----------------------------GQEGLIKNLFGGKLVNYII 126 (334)
T ss_pred CCCCCCCcccchhHHHHHHHHHHHHHHHhccC-----------------------------cccchhhhhCceEEEeEEE
Confidence 22356888999999999999999999887431 1135699999999999999
Q ss_pred eCCCCCeeeeecCCeeEEecCCCCCccceEEEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhcccCCccceeeeeee
Q 002138 498 CPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIY 577 (960)
Q Consensus 498 C~~C~~~S~~~epf~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~e~~ 577 (960)
|..|++.+.+.++|..|+|++|..
T Consensus 127 C~~C~~~s~~~e~f~~l~l~i~~~-------------------------------------------------------- 150 (334)
T cd02659 127 CKECPHESEREEYFLDLQVAVKGK-------------------------------------------------------- 150 (334)
T ss_pred ecCCCceecccccceEEEEEcCCC--------------------------------------------------------
Confidence 999999999999999999987621
Q ss_pred ccceeeecCCCccccccccCCCcEEEEEcCCCCCCCceEEeeeeccccccccccccccceeeccceEEecCCCCChhHHH
Q 002138 578 RSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNGSDIR 657 (960)
Q Consensus 578 ~~~~~~~~~~~~~~~~~I~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~l~ 657 (960)
T Consensus 151 -------------------------------------------------------------------------------- 150 (334)
T cd02659 151 -------------------------------------------------------------------------------- 150 (334)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCCCcCCCCCCCCcccccccCCCCCCccccccccccCCCCCCCCCCcCCCCCCCCCCceEEEecCCCCcccccC
Q 002138 658 KLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTEIKMN 737 (960)
Q Consensus 658 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (960)
T Consensus 151 -------------------------------------------------------------------------------- 150 (334)
T cd02659 151 -------------------------------------------------------------------------------- 150 (334)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCCCeEEEEecChhhHHhhhhhhhhhhhhhcccccccCCCCCCCCHHHHHHHhhCccccCCCCCCCCccccCc
Q 002138 738 EPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPRCKKH 817 (960)
Q Consensus 738 ~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~dCL~~f~~~E~L~~~d~wyC~~Ck~~ 817 (960)
.+|++||+.|+.+|.+.+++.|.|++|++.
T Consensus 151 --------------------------------------------------~~l~~~l~~~~~~e~l~~~~~~~C~~C~~~ 180 (334)
T cd02659 151 --------------------------------------------------KNLEESLDAYVQGETLEGDNKYFCEKCGKK 180 (334)
T ss_pred --------------------------------------------------CCHHHHHHHhcCeeEecCCccEecCcCCCc
Confidence 268899999999999999999999999999
Q ss_pred ceeEEEEEeeeCCCeEEEEEEeeEecc--cccccCCeeeeccCCCCCCCCccccCC----------CCCCccEEEEEEEE
Q 002138 818 WQASKKLDLWRSPDILVIHLKRFSFSR--YFKSKLDTYVDFPIDDLDLSNYVCCKN----------SQLSNRYVLYAISN 885 (960)
Q Consensus 818 ~~AtKk~~l~~lP~iLiIhLKRF~~~~--~~~~Ki~~~V~FPi~~LDls~~v~~~~----------~~~~~~YdL~AVin 885 (960)
+.|.|+..|.++|+||+|||+||.|+. ..+.|+++.|.|| ..|||++|+.... ......|+|+|||+
T Consensus 181 ~~~~k~~~i~~lP~vLii~l~Rf~~~~~~~~~~K~~~~v~fp-~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~vI~ 259 (334)
T cd02659 181 VDAEKGVCFKKLPPVLTLQLKRFEFDFETMMRIKINDRFEFP-LELDMEPYTEKGLAKKEGDSEKKDSESYIYELHGVLV 259 (334)
T ss_pred ccEEEEEEeecCCCEEEEEeeeeEEccccCcceeCCceEeCC-ceecCccccccccccccccccccCCCCeeEEEEEEEE
Confidence 999999999999999999999999973 4578999999999 5899999987542 23567899999999
Q ss_pred eecCCCCCeEEEEEeccccchhhhhhhhhccccccccCCCcEEEEcCCcceecCccccc---------------------
Q 002138 886 HYGGMGGGHYTAFVDIDYHSAFKQYEYLKTQITSVQLGHKRWFEFDDDRVYPVSEDNIK--------------------- 944 (960)
Q Consensus 886 H~G~l~gGHYtAy~k~~~~~~~~~~~~~~~~~~~~~~~~~~Wy~fdDs~Vs~vs~~~v~--------------------- 944 (960)
|.|+..+|||+||+|. ..+++||.|||+.|+++++++|.
T Consensus 260 H~G~~~~GHY~~~vk~--------------------~~~~~W~~~nD~~V~~i~~~~v~~~~~g~~~~~~~~~~~~~~~~ 319 (334)
T cd02659 260 HSGDAHGGHYYSYIKD--------------------RDDGKWYKFNDDVVTPFDPNDAEEECFGGEETQKTYDSGPRAFK 319 (334)
T ss_pred ecCCCCCCCeEEEEEC--------------------CCCCceEEEeCcccEECCHHHHHHHcCCCccccccccccccccc
Confidence 9999999999999998 45899999999999999988884
Q ss_pred -CCCeEEEEEEEecC
Q 002138 945 -TSAAYVLFYKRVSD 958 (960)
Q Consensus 945 -s~~AYvLFY~R~~~ 958 (960)
+..||||||+|++.
T Consensus 320 ~~~~ay~l~Y~~~~~ 334 (334)
T cd02659 320 RTTNAYMLFYERKSP 334 (334)
T ss_pred cccceEEEEEEEeCC
Confidence 45799999999863
No 17
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.1e-50 Score=436.18 Aligned_cols=143 Identities=31% Similarity=0.517 Sum_probs=114.9
Q ss_pred CCHHHHHHHhhCccccCCCCCCCCccccCcceeEEEEEeeeCCCeEEEEEEeeEecc-cccccCCeeeeccCCCCCCCCc
Q 002138 788 VSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSR-YFKSKLDTYVDFPIDDLDLSNY 866 (960)
Q Consensus 788 isL~dCL~~f~~~E~L~~~d~wyC~~Ck~~~~AtKk~~l~~lP~iLiIhLKRF~~~~-~~~~Ki~~~V~FPi~~LDls~~ 866 (960)
.+|++||+.|+.+|.+++ |.|++| +..|.++|+|||||||||.|+. +...|+++.|.||. .|
T Consensus 96 ~sl~~~L~~~~~~E~l~~---~~C~~C--------~~~i~~lP~vLii~LkRF~~~~~~~~~K~~~~v~fp~-~l----- 158 (240)
T cd02662 96 TTLEHCLDDFLSTEIIDD---YKCDRC--------QTVIVRLPQILCIHLSRSVFDGRGTSTKNSCKVSFPE-RL----- 158 (240)
T ss_pred CCHHHHHHHhcCcccccC---cCCCCC--------eEEeecCCcEEEEEEEEEEEcCCCceeeeccEEECCC-cc-----
Confidence 489999999999999965 899999 6789999999999999999987 77889999999994 66
Q ss_pred cccCCCCCCccEEEEEEEEeecCCCCCeEEEEEeccccchhhhhhhhhccccccccCCCcEEEEcCCcceecCcccc-cC
Q 002138 867 VCCKNSQLSNRYVLYAISNHYGGMGGGHYTAFVDIDYHSAFKQYEYLKTQITSVQLGHKRWFEFDDDRVYPVSEDNI-KT 945 (960)
Q Consensus 867 v~~~~~~~~~~YdL~AVinH~G~l~gGHYtAy~k~~~~~~~~~~~~~~~~~~~~~~~~~~Wy~fdDs~Vs~vs~~~v-~s 945 (960)
....|+|+|||+|.|+.++|||+||+|.+..+...................++||+|||+.|+++++++| .+
T Consensus 159 -------~~~~Y~L~avi~H~G~~~~GHY~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v~~~ 231 (240)
T cd02662 159 -------PKVLYRLRAVVVHYGSHSSGHYVCYRRKPLFSKDKEPGSFVRMREGPSSTSHPWWRISDTTVKEVSESEVLEQ 231 (240)
T ss_pred -------CCceEEEEEEEEEeccCCCceEEEEEeCCCcccccccccccccccccCccCCCEEEEechheEEeCHHHHhhC
Confidence 3468999999999998899999999998311100000000000011112468999999999999999999 89
Q ss_pred CCeEEEEEE
Q 002138 946 SAAYVLFYK 954 (960)
Q Consensus 946 ~~AYvLFY~ 954 (960)
++||||||+
T Consensus 232 ~~aY~LfYe 240 (240)
T cd02662 232 KSAYMLFYE 240 (240)
T ss_pred CCEEEEEeC
Confidence 999999996
No 18
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-51 Score=462.52 Aligned_cols=169 Identities=35% Similarity=0.532 Sum_probs=137.8
Q ss_pred CCCCHHHHHHHhhCccccCCCCCCCCccccC---------------------------cceeEEEEEeeeCCCeEEEEEE
Q 002138 786 ESVSLYKCLEAFLKEEPLGPEDMWYCPRCKK---------------------------HWQASKKLDLWRSPDILVIHLK 838 (960)
Q Consensus 786 ~~isL~dCL~~f~~~E~L~~~d~wyC~~Ck~---------------------------~~~AtKk~~l~~lP~iLiIhLK 838 (960)
.++|++.||..||+.|.|.++|+|.|++|.+ ..+|.|++.|-.+|+||+||||
T Consensus 676 ~p~Svq~CL~nFT~~E~Ls~~N~~~CEnCtk~~n~~~r~k~~~n~~~sk~s~~es~~~~t~akk~~li~~aPpVltihlK 755 (877)
T KOG1873|consen 676 EPCSVQRCLKNFTKVEILSGDNKWACENCTKNLNLQRREKRGLNEDNSKYSFNESEYRNTYAKKKVLINKAPPVLTIHLK 755 (877)
T ss_pred CCccHHHHHHhhhhhhhcccccchhhhhhhccccccchhhccCCCCcccccccchhhhhhhhheeeecccCCceeeehHh
Confidence 5899999999999999999999999999977 1247899999999999999999
Q ss_pred eeEec-ccccccCCeeeeccCCCCCCCCccccCCC----CCCccEEEEEEEEeecCCCCCeEEEEEeccccchhhhhhhh
Q 002138 839 RFSFS-RYFKSKLDTYVDFPIDDLDLSNYVCCKNS----QLSNRYVLYAISNHYGGMGGGHYTAFVDIDYHSAFKQYEYL 913 (960)
Q Consensus 839 RF~~~-~~~~~Ki~~~V~FPi~~LDls~~v~~~~~----~~~~~YdL~AVinH~G~l~gGHYtAy~k~~~~~~~~~~~~~ 913 (960)
||... +....|++.+|+|+ +-+||.+|+..... .....|+|+||+.|.|.|.+||||||+|....-+-.... .
T Consensus 756 rf~q~~~~~~~k~~~h~~f~-E~~dL~~~~~~rc~~l~~~~s~~Yrl~gvvehsgtm~~ghyvayv~~~t~~~~~~~~-~ 833 (877)
T KOG1873|consen 756 RFFQDIRGRLSKLNKHVDFK-EFEDLLDYMDFRCSHLDEPSSFVYRLAGVVEHSGTMSYGHYVAYVRGGTFLDLSAPS-N 833 (877)
T ss_pred hhhhhhhchhhcccccchHH-HHHHHHHHhhhhccccCCcchhhhhhccceeccccccCCcchhhhhccchhhccCcc-c
Confidence 99987 44478999999999 89999999874332 245689999999999999999999999973211100000 1
Q ss_pred hccc-cccccCCCcEEEEcCCcceecCcccccCCCeEEEEEEEe
Q 002138 914 KTQI-TSVQLGHKRWFEFDDDRVYPVSEDNIKTSAAYVLFYKRV 956 (960)
Q Consensus 914 ~~~~-~~~~~~~~~Wy~fdDs~Vs~vs~~~v~s~~AYvLFY~R~ 956 (960)
.... .......++|||..|++|.+|++++|+...||||||+|+
T Consensus 834 ~~~~~sd~~~~~~~Wy~iSDs~VrevS~d~vLkseAYlLFYERI 877 (877)
T KOG1873|consen 834 SKDFESDAGIPSGRWYYISDSIVREVSLDEVLKSEAYLLFYERI 877 (877)
T ss_pred cccchhccCCCCcceEEecchheecccHHHHhhhhhhhhheecC
Confidence 1000 111146899999999999999999999999999999996
No 19
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.1e-48 Score=413.46 Aligned_cols=147 Identities=50% Similarity=0.893 Sum_probs=137.2
Q ss_pred CCHHHHHHHhhCccccCCCCCCCCccccCcceeEEEEEeeeCCCeEEEEEEeeEecccccccCCeeeeccCCCCCCCCcc
Q 002138 788 VSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLSNYV 867 (960)
Q Consensus 788 isL~dCL~~f~~~E~L~~~d~wyC~~Ck~~~~AtKk~~l~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v 867 (960)
.+|++||+.|+.+|.+++.+.|.|++|++++.+.++..|.++|++|+|||+||.++.....|+++.|.||.+.|||++|+
T Consensus 84 ~sl~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~iLii~l~R~~~~~~~~~K~~~~v~~~~~~l~l~~~~ 163 (230)
T cd02674 84 VTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDLTPYV 163 (230)
T ss_pred CCHHHHHHHhcCccccCCCCceeCCCCCCccceEEEEEEecCChhhEeEhhheecCCCCcccCCceEecccccccccccc
Confidence 58999999999999999999999999999999999999999999999999999999888899999999998789999997
Q ss_pred ccCCCCCCccEEEEEEEEeecCCCCCeEEEEEeccccchhhhhhhhhccccccccCCCcEEEEcCCcceecCcccccCCC
Q 002138 868 CCKNSQLSNRYVLYAISNHYGGMGGGHYTAFVDIDYHSAFKQYEYLKTQITSVQLGHKRWFEFDDDRVYPVSEDNIKTSA 947 (960)
Q Consensus 868 ~~~~~~~~~~YdL~AVinH~G~l~gGHYtAy~k~~~~~~~~~~~~~~~~~~~~~~~~~~Wy~fdDs~Vs~vs~~~v~s~~ 947 (960)
..........|+|+|||.|.|..++|||+||+|. ..+++||.|||+.|++++++++....
T Consensus 164 ~~~~~~~~~~Y~L~~vI~H~G~~~~GHY~~~~~~--------------------~~~~~W~~fnD~~V~~i~~~~~~~~~ 223 (230)
T cd02674 164 DTRSFTGPFKYDLYAVVNHYGSLNGGHYTAYCKN--------------------NETNDWYKFDDSRVTKVSESSVVSSS 223 (230)
T ss_pred CcccCCCCceEEEEEEEEeeCCCCCcEEEEEEEC--------------------CCCCceEEEcCCeEEEcCHHHccCCC
Confidence 5555557789999999999997799999999998 44699999999999999999999999
Q ss_pred eEEEEEE
Q 002138 948 AYVLFYK 954 (960)
Q Consensus 948 AYvLFY~ 954 (960)
||||||+
T Consensus 224 ~YlL~Y~ 230 (230)
T cd02674 224 AYILFYE 230 (230)
T ss_pred ceEEEeC
Confidence 9999996
No 20
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-45 Score=425.82 Aligned_cols=324 Identities=33% Similarity=0.580 Sum_probs=272.3
Q ss_pred cccccccccccCCCccchHHHHHHHhcChHHHHHHHhccccccccCCCCCCchHHHHHHHHHHHHhcCCC-CCccChHHH
Q 002138 334 VCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPG-GIPVAPRMF 412 (960)
Q Consensus 334 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~al~~L~~~l~~~~-~~~i~P~~f 412 (960)
...-+++||.|+|||||||++||+|.+.+..+...+...+.. +.......++.+++.+++..+|++. ..++.|..+
T Consensus 156 ~~~~~l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~~---~~~~~~~~~l~~~~~~~~~~~~s~~~~~~~sp~~~ 232 (492)
T KOG1867|consen 156 TTALGLRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHSK---EPSSSGSSCLVCDLDRLFQALYSGHNRTPYSPFEL 232 (492)
T ss_pred eeeecccccccccHHHHHHHHHHHhhccchhhccchhhhccc---CCCCCCCcchhhhhhhhhhHhhcCCCCCCcChHHH
Confidence 456799999999999999999999999999999888665541 1111225679999999999999998 899999999
Q ss_pred HHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCccccccceEE
Q 002138 413 KLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQY 492 (960)
Q Consensus 413 ~~~l~~~~~~F~~~~QQDA~EfL~~LLd~L~eel~~~~~kp~~e~~d~~~~~~~~~a~e~w~~~~~~n~SiI~~lF~G~~ 492 (960)
...+++..|.|.||.|||||||+..+++.+|.+.+.-.+. +...... ....+++...|.|++
T Consensus 233 l~~~~k~~~~~~g~~Qqda~eF~~~~~~~~~~~~~~~~k~---~~~~~~~---------------~~c~~iv~~~F~G~L 294 (492)
T KOG1867|consen 233 LNLVWKHSPNLAGYEQQDAHEFLIALLDRLHREKDDCGKS---LIASQSN---------------KQCPCIVHTIFSGTL 294 (492)
T ss_pred HHHHHHhCcccccccccchHHHHHHhcccccccccccccc---cccccCC---------------cccccccceeeccee
Confidence 9999999999999999999999999999999876111111 0000000 023678999999999
Q ss_pred EEEEeeCCCCCeeeeecCCeeEEecCCCCCccceEEEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhcccCCcccee
Q 002138 493 RSMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLL 572 (960)
Q Consensus 493 ~s~l~C~~C~~~S~~~epf~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~ 572 (960)
.+.++|..|+..|.+++||++|+|.||....-.
T Consensus 295 ~~~v~c~~c~~~S~~~dpf~disL~i~~~~~~~----------------------------------------------- 327 (492)
T KOG1867|consen 295 QSDVTCQTCGSKSTTYDPFMDISLDIPDQFTSS----------------------------------------------- 327 (492)
T ss_pred ccceeehhhcceeeeccCccceeeecchhccCc-----------------------------------------------
Confidence 999999999999999999999999998531000
Q ss_pred eeeeeccceeeecCCCccccccccCCCcEEEEEcCCCCCCCceEEeeeeccccccccccccccceeeccceEEecCCCCC
Q 002138 573 VAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTN 652 (960)
Q Consensus 573 ~~e~~~~~~~~~~~~~~~~~~~I~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~ 652 (960)
+
T Consensus 328 ------------~------------------------------------------------------------------- 328 (492)
T KOG1867|consen 328 ------------S------------------------------------------------------------------- 328 (492)
T ss_pred ------------c-------------------------------------------------------------------
Confidence 0
Q ss_pred hhHHHHHHHHhcCCCcCCCCCCCCcccccccCCCCCCccccccccccCCCCCCCCCCcCCCCCCCCCCceEEEecCCCCc
Q 002138 653 GSDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPT 732 (960)
Q Consensus 653 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (960)
. +.
T Consensus 329 ------------------------------------------------------~-------------------~~---- 331 (492)
T KOG1867|consen 329 ------------------------------------------------------V-------------------RS---- 331 (492)
T ss_pred ------------------------------------------------------c-------------------cc----
Confidence 0 00
Q ss_pred ccccCCCCCcCCCCCCeEEEEecChhhHHhhhhhhhhhhhhhcccccccCCCCCCCCHHHHHHHhhCccccCCCCCCCCc
Q 002138 733 EIKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCP 812 (960)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~dCL~~f~~~E~L~~~d~wyC~ 812 (960)
...++.+|++.|+.-|.++......|.
T Consensus 332 -----------------------------------------------------~~~~~~~cl~~~~~~~~~~~~~~~~c~ 358 (492)
T KOG1867|consen 332 -----------------------------------------------------PELTLLDCLDRFTRSEQLGKDSKYKCS 358 (492)
T ss_pred -----------------------------------------------------chhhhhhhhhhhhhhhhcCcccccccC
Confidence 013689999999999999999999999
Q ss_pred cccCcceeEEEEEeeeCCCeEEEEEEeeEecccccc-cCCeeeeccCCCCCCCCccccC---CC-CCCccEEEEEEEEee
Q 002138 813 RCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKS-KLDTYVDFPIDDLDLSNYVCCK---NS-QLSNRYVLYAISNHY 887 (960)
Q Consensus 813 ~Ck~~~~AtKk~~l~~lP~iLiIhLKRF~~~~~~~~-Ki~~~V~FPi~~LDls~~v~~~---~~-~~~~~YdL~AVinH~ 887 (960)
.|+..+.++|++.+-++|.+|.+|||||.+...... |+++.|.|| ..|+|.+|+..+ .. ..+..|+|+|||+|+
T Consensus 359 ~c~~~~~~~kql~~~~lP~~l~~~lkRfe~~~~~~~~ki~~~v~fp-~~l~m~p~~~~~~~~~~~~~~~~Y~L~AVV~H~ 437 (492)
T KOG1867|consen 359 SCKSKQESTKQLTIRKLPAVLCLHLKRFEHSATGAREKIDSYVSFP-VLLNMKPYCSSEKLKSQDNPDHLYELRAVVVHH 437 (492)
T ss_pred CcccccccccccccccCCceeeeeeccccccccccccccCcccccc-hhhcCCccccccccccCCCCCceEEEEEEEEec
Confidence 999999999999999999999999999999855444 999999999 699999999851 11 247899999999999
Q ss_pred cCCCCCeEEEEEeccccchhhhhhhhhccccccccCCCcEEEEcCCcceecCcccccCCCeEEEEEEEec
Q 002138 888 GGMGGGHYTAFVDIDYHSAFKQYEYLKTQITSVQLGHKRWFEFDDDRVYPVSEDNIKTSAAYVLFYKRVS 957 (960)
Q Consensus 888 G~l~gGHYtAy~k~~~~~~~~~~~~~~~~~~~~~~~~~~Wy~fdDs~Vs~vs~~~v~s~~AYvLFY~R~~ 957 (960)
|.+++||||||+|+ .+.||+|||+.|+.+++++|.+..||+|||.++.
T Consensus 438 G~~~SGHY~aY~r~----------------------~~~~~~~dDs~v~~~s~~eVl~~~aylLFY~~~~ 485 (492)
T KOG1867|consen 438 GTVGSGHYVAYRRQ----------------------SGGWFKCDDSTVTKVSEEEVLSSQAYLLFYTQEQ 485 (492)
T ss_pred cCCCCCceEEEEEe----------------------CCCcEEEcCeEEEEeeHHHhhhchhhheehhHHh
Confidence 99999999999999 8899999999999999999999999999998753
No 21
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.9e-45 Score=390.40 Aligned_cols=130 Identities=26% Similarity=0.472 Sum_probs=107.9
Q ss_pred CHHHHHHHhhCccccCCCCCCCCccccCcceeEEEEEeeeCCCeEEEEEEeeEecccccccCCeeeeccCCCCCCCCccc
Q 002138 789 SLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLSNYVC 868 (960)
Q Consensus 789 sL~dCL~~f~~~E~L~~~d~wyC~~Ck~~~~AtKk~~l~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~ 868 (960)
+|++|++.|.++|.++ |.|++|+.. .|+|+..|+++|+||+||||||.+.. ++...+.. ..++|.+|+.
T Consensus 111 ~le~l~~~~~~~~~~e----~~C~~C~~~-~a~k~~~i~~~P~vL~i~lkRf~~~~----~~~~~~~~--~~~~~~~~~~ 179 (245)
T cd02673 111 IDELLISNFKTWSPIE----KDCSSCKCE-SAISSERIMTFPECLSINLKRYKLRI----ATSDYLKK--NEEIMKKYCG 179 (245)
T ss_pred hHHHHHHHhhcccccC----ccCCCCCCc-cceeechhhhCChhhEEeeEeeeecc----cccccccc--cccccccccC
Confidence 4677888888777663 799999875 89999999999999999999998653 22333332 3577888874
Q ss_pred cCCCCCCccEEEEEEEEeec-CCCCCeEEEEEeccccchhhhhhhhhccccccccC-CCcEEEEcCCcceecCccccc--
Q 002138 869 CKNSQLSNRYVLYAISNHYG-GMGGGHYTAFVDIDYHSAFKQYEYLKTQITSVQLG-HKRWFEFDDDRVYPVSEDNIK-- 944 (960)
Q Consensus 869 ~~~~~~~~~YdL~AVinH~G-~l~gGHYtAy~k~~~~~~~~~~~~~~~~~~~~~~~-~~~Wy~fdDs~Vs~vs~~~v~-- 944 (960)
.+..|+|+|||+|.| ++++||||||+|. .. +++||.|||+.|+++++++|.
T Consensus 180 -----~~~~Y~L~~VV~H~G~~~~~GHY~a~vk~--------------------~~~~~~Wy~fnD~~V~~v~~~~v~~~ 234 (245)
T cd02673 180 -----TDAKYSLVAVICHLGESPYDGHYIAYTKE--------------------LYNGSSWLYCSDDEIRPVSKNDVSTN 234 (245)
T ss_pred -----CCceEEEEEEEEECCCCCCCceEEEEEEc--------------------CCCCCeEEEeeCceeeEcCHHHHhhc
Confidence 346799999999999 5999999999998 44 689999999999999999998
Q ss_pred -CCCeEEEEEE
Q 002138 945 -TSAAYVLFYK 954 (960)
Q Consensus 945 -s~~AYvLFY~ 954 (960)
+.+||||||+
T Consensus 235 ~~~~aYiLFY~ 245 (245)
T cd02673 235 ARSSGYLIFYD 245 (245)
T ss_pred cCCceEEEEEC
Confidence 6799999996
No 22
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.8e-44 Score=379.60 Aligned_cols=127 Identities=25% Similarity=0.378 Sum_probs=111.5
Q ss_pred CHHHHHHHhhCccccCCCCCCCCccccCcceeEEEEEeeeCCCeEEEEEEeeEecccccccCCeeeeccCCCCCCCCccc
Q 002138 789 SLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLSNYVC 868 (960)
Q Consensus 789 sL~dCL~~f~~~E~L~~~d~wyC~~Ck~~~~AtKk~~l~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~ 868 (960)
+|++||+.|+.+|.+++++.++ .+.++|+..|+++|+||+||||||.|+...+.||.+.|.||. .|
T Consensus 94 ~L~e~L~~~~~ee~l~~~~~~~------~~~~~~~~~i~~lP~vL~i~LkRF~~~~~~~~Ki~~~v~FP~-~l------- 159 (228)
T cd02665 94 NLHECLEAAMFEGEVELLPSDH------SVKSGQERWFTELPPVLTFELSRFEFNQGRPEKIHDKLEFPQ-II------- 159 (228)
T ss_pred CHHHHHHHhhhhcccccccccc------hhhhhhhhhhhhCChhhEEEeEeeEEcCCccEECCEEEEeeC-cc-------
Confidence 7999999999999998755433 345778888999999999999999999877899999999995 55
Q ss_pred cCCCCCCccEEEEEEEEeecCCCCCeEEEEEeccccchhhhhhhhhccccccccCCCcEEEEcCCcceecCccccc----
Q 002138 869 CKNSQLSNRYVLYAISNHYGGMGGGHYTAFVDIDYHSAFKQYEYLKTQITSVQLGHKRWFEFDDDRVYPVSEDNIK---- 944 (960)
Q Consensus 869 ~~~~~~~~~YdL~AVinH~G~l~gGHYtAy~k~~~~~~~~~~~~~~~~~~~~~~~~~~Wy~fdDs~Vs~vs~~~v~---- 944 (960)
....|+|+|||+|.|++++|||+||+|. ..+++||+|||+.|+++++++|.
T Consensus 160 -----~~~~Y~L~aVi~H~G~~~~GHY~~~i~~--------------------~~~~~W~~fdD~~V~~~~~~~v~~~~f 214 (228)
T cd02665 160 -----QQVPYELHAVLVHEGQANAGHYWAYIYK--------------------QSRQEWEKYNDISVTESSWEEVERDSF 214 (228)
T ss_pred -----CCceeEEEEEEEecCCCCCCEEEEEEEc--------------------CCCCEEEEEECCeeEEcCHHHHhhhcc
Confidence 2357999999999999999999999997 56889999999999999998886
Q ss_pred ----CCCeEEEEEE
Q 002138 945 ----TSAAYVLFYK 954 (960)
Q Consensus 945 ----s~~AYvLFY~ 954 (960)
..+||||||.
T Consensus 215 Gg~~~~~AYiLfYv 228 (228)
T cd02665 215 GGGRNPSAYCLMYI 228 (228)
T ss_pred CCCCCCceEEEEEC
Confidence 3589999994
No 23
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=100.00 E-value=5.7e-44 Score=387.14 Aligned_cols=148 Identities=38% Similarity=0.688 Sum_probs=122.8
Q ss_pred ccccccCCCccchHHHHHHHhcChHHHHHHHhc-cccccccCCCCCCchHHHHHHHHHHHHhcCC--CCCccChHHHHHH
Q 002138 339 LTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGD-YQKEINYENPLGLNGELALAFGDLLRKLWAP--GGIPVAPRMFKLK 415 (960)
Q Consensus 339 ~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~-~~~~~~~~n~~~~~~~l~~al~~L~~~l~~~--~~~~i~P~~f~~~ 415 (960)
++||.|.||||||||+||||+++|+|++++++. +....+..++.....+++.+|+.|+..||.. ....+.|..|..+
T Consensus 1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~~~~~~ 80 (269)
T PF00443_consen 1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSNSSDSSISPSDFINA 80 (269)
T ss_dssp --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSCSSSSEEHCHHHHHH
T ss_pred CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhcccccceeecccccc
Confidence 589999999999999999999999999999854 2233344555566678999999999999988 6778999999999
Q ss_pred HhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCccccccceEEEEE
Q 002138 416 LANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSM 495 (960)
Q Consensus 416 l~~~~~~F~~~~QQDA~EfL~~LLd~L~eel~~~~~kp~~e~~d~~~~~~~~~a~e~w~~~~~~n~SiI~~lF~G~~~s~ 495 (960)
++...+.|.+++||||+|||..||+.|++++..... ...|........+++.++|.|++.+.
T Consensus 81 l~~~~~~~~~~~qqDa~E~l~~ll~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~f~~~~~~~ 142 (269)
T PF00443_consen 81 LSSINPSFSNGEQQDAHEFLSFLLDWLDEEFNSSFK------------------RKSWKNTNSSEDSLISDLFGGQFESS 142 (269)
T ss_dssp HHHHCGGGGSSSTEEHHHHHHHHHHHHHHHHTSCSS------------------HHHHHHHHCCEESHHHHHH-EEEEEE
T ss_pred ccccccccccccccchhhhhcccccccchhhccccc------------------cccccccccccccccccccccccccc
Confidence 999999999999999999999999999998865322 33456666777888999999999999
Q ss_pred EeeCCCCCe
Q 002138 496 LVCPVCNKV 504 (960)
Q Consensus 496 l~C~~C~~~ 504 (960)
++|..|+..
T Consensus 143 ~~c~~c~~~ 151 (269)
T PF00443_consen 143 IKCSSCKNS 151 (269)
T ss_dssp EEETTTTCE
T ss_pred ccccccccc
Confidence 999888754
No 24
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-43 Score=395.20 Aligned_cols=153 Identities=29% Similarity=0.492 Sum_probs=128.8
Q ss_pred cccccccccccCCCccchHHHHHHHhcChHHHHHHHhccccccccCCCCCCchHHHHHHHHHHHHhcCCCC---------
Q 002138 334 VCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGG--------- 404 (960)
Q Consensus 334 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~al~~L~~~l~~~~~--------- 404 (960)
..+||.+||+|+||+||||||+|+|+++|.|...++.. ..+-...+.....++-+++.+|...|.++..
T Consensus 302 ~~gpgytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~--~~~f~~~~~~P~ndf~cQ~~Kl~~gm~sgkys~p~~~~~~ 379 (763)
T KOG0944|consen 302 LFGPGYTGLINLGNSCYLNSVMQSLFSIPSFQRRYLEQ--ERIFNCYPKDPTNDFNCQLAKLLHGMLSGKYSKPLMDPSN 379 (763)
T ss_pred ccCCCccceeecCcchhHHHHHHHheecccHHHhhccc--cceeecCCCCcchhHHHHHHHHHHHhhcCcccCccCCccc
Confidence 56899999999999999999999999999999887755 1111222334456799999999999976542
Q ss_pred -CccChHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCC-C
Q 002138 405 -IPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARND-S 482 (960)
Q Consensus 405 -~~i~P~~f~~~l~~~~~~F~~~~QQDA~EfL~~LLd~L~eel~~~~~kp~~e~~d~~~~~~~~~a~e~w~~~~~~n~-S 482 (960)
..|+|..|+..+++-.|.|+..+||||||||.+||+.|.+... .. .
T Consensus 380 qngIsP~mFK~~igknHpeFst~~QQDA~EFllfLl~ki~~n~r--------------------------------s~~~ 427 (763)
T KOG0944|consen 380 QNGISPLMFKALIGKNHPEFSTNRQQDAQEFLLFLLEKIRENSR--------------------------------SSLP 427 (763)
T ss_pred cCCcCHHHHHHHHcCCCccccchhhhhHHHHHHHHHHHHhhccc--------------------------------ccCC
Confidence 3589999999999999999999999999999999999985421 11 2
Q ss_pred ccccccceEEEEEEeeCCCCCeeeeecCCeeEEecCCC
Q 002138 483 IIVDLCQGQYRSMLVCPVCNKVSVTFDPLMYLSLPIPS 520 (960)
Q Consensus 483 iI~~lF~G~~~s~l~C~~C~~~S~~~epf~~LsL~iP~ 520 (960)
.+.++|......++.|..|++++.+.++-+.+.||||.
T Consensus 428 nptd~frF~ve~Rv~C~~c~kVrYs~~~~~~i~lpv~~ 465 (763)
T KOG0944|consen 428 NPTDLFRFEVEDRVSCLGCRKVRYSYESEYLIQLPVPM 465 (763)
T ss_pred CHHHHHHhhhhhhhhhhccccccccchhheeeEeeccc
Confidence 38899999999999999999999999999999999984
No 25
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.6e-43 Score=395.86 Aligned_cols=159 Identities=22% Similarity=0.292 Sum_probs=122.4
Q ss_pred ccccccCCCccchHHHHHHHhcChHHHHHHHhcc--cccc----ccCCCCC----------CchHHHHHHHHHHHHhcCC
Q 002138 339 LTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDY--QKEI----NYENPLG----------LNGELALAFGDLLRKLWAP 402 (960)
Q Consensus 339 ~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~--~~~~----~~~n~~~----------~~~~l~~al~~L~~~l~~~ 402 (960)
|+||.|+||||||||+||||+++|+||++++..- ..+. ......+ ...+++.+|+.||..|+.+
T Consensus 1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s 80 (343)
T cd02666 1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS 80 (343)
T ss_pred CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence 6899999999999999999999999999998531 1100 0000000 1236899999999999988
Q ss_pred CCCccChHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCC
Q 002138 403 GGIPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDS 482 (960)
Q Consensus 403 ~~~~i~P~~f~~~l~~~~~~F~~~~QQDA~EfL~~LLd~L~eel~~~~~kp~~e~~d~~~~~~~~~a~e~w~~~~~~n~S 482 (960)
...++.|..++..+.. .|||||||+..||+.||++++.....+.. ++. .......+
T Consensus 81 ~~~~v~P~~~l~~l~~--------~QQDa~Ef~~~lld~Le~~lk~~~~~~~~--------~~~--------~~~~~~~~ 136 (343)
T cd02666 81 NTRSVTPSKELAYLAL--------RQQDVTECIDNVLFQLEVALEPISNAFAG--------PDT--------EDDKEQSD 136 (343)
T ss_pred CCCccCcHHHHHhccc--------cccchHHHHHHHHHHHHHHhcCccccccC--------ccc--------ccccchhh
Confidence 8899999999876642 89999999999999999999754321110 000 00113457
Q ss_pred ccccccceEEEEEEeeCCCC---CeeeeecCCeeEEecCCCC
Q 002138 483 IIVDLCQGQYRSMLVCPVCN---KVSVTFDPLMYLSLPIPST 521 (960)
Q Consensus 483 iI~~lF~G~~~s~l~C~~C~---~~S~~~epf~~LsL~iP~~ 521 (960)
+|.++|.|+++++++|..|+ ..+.+.|+|++|+|+|+.+
T Consensus 137 ~I~~lF~G~~~~~i~c~~~~~~~~~s~~~E~F~~L~l~I~~~ 178 (343)
T cd02666 137 LIKRLFSGKTKQQLVPESMGNQPSVRTKTERFLSLLVDVGKK 178 (343)
T ss_pred hhhHhceeeEEEEEEecccCCCCCCccccceeEEEEEecCcc
Confidence 89999999999999999997 7899999999999999743
No 26
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-44 Score=404.37 Aligned_cols=309 Identities=27% Similarity=0.458 Sum_probs=264.6
Q ss_pred cccccccccccCCCccchHHHHHHHhcChHHHHHHHhccccccccCCCC-CCchHHHHHHHHHHHHhcCCCCCccChHHH
Q 002138 334 VCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPL-GLNGELALAFGDLLRKLWAPGGIPVAPRMF 412 (960)
Q Consensus 334 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~-~~~~~l~~al~~L~~~l~~~~~~~i~P~~f 412 (960)
...-|+|||.|-|+|||||+++|-|.++|.+++-++..+.. .++|. .-...+.+.++.+|..+..+.-.++.|+.|
T Consensus 90 Rpp~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~---td~pd~s~~e~vl~~lQ~iF~hL~~s~lQyyVPeg~ 166 (944)
T KOG1866|consen 90 RPPEGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGT---TDLPDMSGDEKVLRHLQVIFGHLAASQLQYYVPEGF 166 (944)
T ss_pred CCCcceeeecCCCchHHHhhhhhhhhhcccccchhhhhccc---ccchhhcchHHHHHHHHHHHHHHHHHhhhhhcchhH
Confidence 45679999999999999999999999999999977644333 22221 222348999999999998888889999999
Q ss_pred HHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCccccccceEE
Q 002138 413 KLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQY 492 (960)
Q Consensus 413 ~~~l~~~~~~F~~~~QQDA~EfL~~LLd~L~eel~~~~~kp~~e~~d~~~~~~~~~a~e~w~~~~~~n~SiI~~lF~G~~ 492 (960)
.+.++........-+||||-||++.|||.+.|-|++.... -++...|+|.+
T Consensus 167 Wk~Fr~~~~pln~reqhDA~eFf~sLld~~De~LKklg~p-----------------------------~lf~n~f~G~y 217 (944)
T KOG1866|consen 167 WKQFRLWGEPLNLREQHDALEFFNSLLDSLDEALKKLGHP-----------------------------QLFSNTFGGSY 217 (944)
T ss_pred HHHhhccCCccchHhhhhHHHHHHHHHHHHHHHHHHhCCc-----------------------------HHHHHHhcCcc
Confidence 9999877767778899999999999999999999875432 35788999999
Q ss_pred EEEEeeCCCCCeeeeecCCeeEEecCCCCCccceEEEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhcccCCcccee
Q 002138 493 RSMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLL 572 (960)
Q Consensus 493 ~s~l~C~~C~~~S~~~epf~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~ 572 (960)
...-.|.+|-+.-...|+|+.|+|.|--
T Consensus 218 sdqKIC~~CpHRY~~eE~F~~l~l~i~~---------------------------------------------------- 245 (944)
T KOG1866|consen 218 SDQKICQGCPHRYECEESFTTLNLDIRH---------------------------------------------------- 245 (944)
T ss_pred chhhhhccCCcccCccccceeeeeeccc----------------------------------------------------
Confidence 9999999999999999999999987620
Q ss_pred eeeeeccceeeecCCCccccccccCCCcEEEEEcCCCCCCCceEEeeeeccccccccccccccceeeccceEEecCCCCC
Q 002138 573 VAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTN 652 (960)
Q Consensus 573 ~~e~~~~~~~~~~~~~~~~~~~I~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~ 652 (960)
T Consensus 246 -------------------------------------------------------------------------------- 245 (944)
T KOG1866|consen 246 -------------------------------------------------------------------------------- 245 (944)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHhcCCCcCCCCCCCCcccccccCCCCCCccccccccccCCCCCCCCCCcCCCCCCCCCCceEEEecCCCCc
Q 002138 653 GSDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPT 732 (960)
Q Consensus 653 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (960)
T Consensus 246 -------------------------------------------------------------------------------- 245 (944)
T KOG1866|consen 246 -------------------------------------------------------------------------------- 245 (944)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCcCCCCCCeEEEEecChhhHHhhhhhhhhhhhhhcccccccCCCCCCCCHHHHHHHhhCccccCCCCCCCCc
Q 002138 733 EIKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCP 812 (960)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~dCL~~f~~~E~L~~~d~wyC~ 812 (960)
-+|++.|+.|.+.|.|+|.|+|+|+
T Consensus 246 -------------------------------------------------------~nLeesLeqfv~gevlEG~nAYhCe 270 (944)
T KOG1866|consen 246 -------------------------------------------------------QNLEESLEQFVKGEVLEGANAYHCE 270 (944)
T ss_pred -------------------------------------------------------chHHHHHHHHHHHHHhcCcchhhhh
Confidence 1689999999999999999999999
Q ss_pred cccCcceeEEEEEeeeCCCeEEEEEEeeEec--ccccccCCeeeeccCCCCCCCCccccCC----------------CCC
Q 002138 813 RCKKHWQASKKLDLWRSPDILVIHLKRFSFS--RYFKSKLDTYVDFPIDDLDLSNYVCCKN----------------SQL 874 (960)
Q Consensus 813 ~Ck~~~~AtKk~~l~~lP~iLiIhLKRF~~~--~~~~~Ki~~~V~FPi~~LDls~~v~~~~----------------~~~ 874 (960)
+|++++...|++.|.+||++|+||||||.|+ +....|-+..+.|| ..|||.||....- ..+
T Consensus 271 KCdeK~~TvkRt~ik~LPsvl~IqLkRF~yD~e~~~~iK~n~~frFP-~~ldMePYtvsg~a~~e~~~~~~g~~~e~s~~ 349 (944)
T KOG1866|consen 271 KCDEKVDTVKRTCIKKLPSVLAIQLKRFDYDWERECAIKFNDYFRFP-RELDMEPYTVSGVAKLEGENVESGQQLEQSAG 349 (944)
T ss_pred hhhhhhHhHHHHHHhhCChhheehhhhccchhhhccccccchhcccc-hhhcCCceeehhhhhhccccCCcCcccccccC
Confidence 9999999999999999999999999999997 77788999999999 6999999987321 126
Q ss_pred CccEEEEEEEEeecCCCCCeEEEEEeccccchhhhhhhhhccccccccCCCcEEEEcCCcceecCcccccC---------
Q 002138 875 SNRYVLYAISNHYGGMGGGHYTAFVDIDYHSAFKQYEYLKTQITSVQLGHKRWFEFDDDRVYPVSEDNIKT--------- 945 (960)
Q Consensus 875 ~~~YdL~AVinH~G~l~gGHYtAy~k~~~~~~~~~~~~~~~~~~~~~~~~~~Wy~fdDs~Vs~vs~~~v~s--------- 945 (960)
+.+|+|+||+.|.|...+|||++|+|... ....++||+|||-.|++++..++..
T Consensus 350 t~~YeLvGVlvHSGqAsaGHYySfIk~rr-----------------~~~~~kWykfnD~~Vte~~~n~me~~cfGGey~q 412 (944)
T KOG1866|consen 350 TTKYELVGVLVHSGQASAGHYYSFIKQRR-----------------GEDGNKWYKFNDGDVTECKMNEMENECFGGEYMQ 412 (944)
T ss_pred cceeEEEEEEEecccccCcchhhhhhhhc-----------------cCCCCceEeccCccccccchhhHHHHhhcchhhh
Confidence 78999999999999999999999998721 1456999999999999999776641
Q ss_pred -----------CCeEEEEEEEecCC
Q 002138 946 -----------SAAYVLFYKRVSDV 959 (960)
Q Consensus 946 -----------~~AYvLFY~R~~~~ 959 (960)
=+||||||+|.++.
T Consensus 413 ~~~~~~~rrR~WNAYmlFYer~~d~ 437 (944)
T KOG1866|consen 413 MMKRMSYRRRWWNAYMLFYERMDDI 437 (944)
T ss_pred cccccchHHHhhhhHHHHHHHhcCC
Confidence 26999999999864
No 27
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-41 Score=383.52 Aligned_cols=299 Identities=27% Similarity=0.446 Sum_probs=252.1
Q ss_pred cccccccccccCCCccchHHHHHHHhcChHHHHHHHhccccccccCCCCCCchHHHHHHHHHHHHhcCCCCCccChHHHH
Q 002138 334 VCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFK 413 (960)
Q Consensus 334 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~al~~L~~~l~~~~~~~i~P~~f~ 413 (960)
....|.+||.|+|.||||||.||+|+.+..||+...+ +.+++|.+ ...++.||+++|.+| .....+++..+|.
T Consensus 188 KkeTGYVGlrNqGATCYmNSLlQslffi~~FRk~Vy~-----ipTd~p~g-rdSValaLQr~Fynl-q~~~~PvdTtelt 260 (1089)
T COG5077 188 KKETGYVGLRNQGATCYMNSLLQSLFFIAKFRKDVYG-----IPTDHPRG-RDSVALALQRLFYNL-QTGEEPVDTTELT 260 (1089)
T ss_pred ccceeeeeeccCCceeeHHHHHHHHHHHHHHHHHhhc-----CCCCCCCc-cchHHHHHHHHHHHH-hccCCCcchHHhh
Confidence 4578999999999999999999999999999987753 44555544 356999999999999 5566899999999
Q ss_pred HHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCccccccceEEE
Q 002138 414 LKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYR 493 (960)
Q Consensus 414 ~~l~~~~~~F~~~~QQDA~EfL~~LLd~L~eel~~~~~kp~~e~~d~~~~~~~~~a~e~w~~~~~~n~SiI~~lF~G~~~ 493 (960)
...+. ..+..++|||.|||-..|.|.|+..++... + ...+..+|.|.++
T Consensus 261 rsfgW--ds~dsf~QHDiqEfnrVl~DnLEksmrgt~----V-------------------------Enaln~ifVgkmk 309 (1089)
T COG5077 261 RSFGW--DSDDSFMQHDIQEFNRVLQDNLEKSMRGTV----V-------------------------ENALNGIFVGKMK 309 (1089)
T ss_pred hhcCc--ccchHHHHHhHHHHHHHHHHHHHHhhcCCh----h-------------------------hhHHhHHHHHHhh
Confidence 88765 356678999999999999999986543211 0 0127899999999
Q ss_pred EEEeeCCCCCeeeeecCCeeEEecCCCCCccceEEEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhcccCCccceee
Q 002138 494 SMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLV 573 (960)
Q Consensus 494 s~l~C~~C~~~S~~~epf~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~ 573 (960)
+.+.|-.-.++|.+.|.|+++.|++.
T Consensus 310 syikCvnvnyEsarvedfwdiqlNvK------------------------------------------------------ 335 (1089)
T COG5077 310 SYIKCVNVNYESARVEDFWDIQLNVK------------------------------------------------------ 335 (1089)
T ss_pred ceeeEEEechhhhhHHHHHHHHhccc------------------------------------------------------
Confidence 99999988888888888877776541
Q ss_pred eeeeccceeeecCCCccccccccCCCcEEEEEcCCCCCCCceEEeeeeccccccccccccccceeeccceEEecCCCCCh
Q 002138 574 AEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNG 653 (960)
Q Consensus 574 ~e~~~~~~~~~~~~~~~~~~~I~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~ 653 (960)
T Consensus 336 -------------------------------------------------------------------------------- 335 (1089)
T COG5077 336 -------------------------------------------------------------------------------- 335 (1089)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHhcCCCcCCCCCCCCcccccccCCCCCCccccccccccCCCCCCCCCCcCCCCCCCCCCceEEEecCCCCcc
Q 002138 654 SDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTE 733 (960)
Q Consensus 654 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (960)
T Consensus 336 -------------------------------------------------------------------------------- 335 (1089)
T COG5077 336 -------------------------------------------------------------------------------- 335 (1089)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCcCCCCCCeEEEEecChhhHHhhhhhhhhhhhhhcccccccCCCCCCCCHHHHHHHhhCccccCCCCCCCCcc
Q 002138 734 IKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPR 813 (960)
Q Consensus 734 ~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~dCL~~f~~~E~L~~~d~wyC~~ 813 (960)
..-+|+|.++.|.+.|+|+|+|.|+|+.
T Consensus 336 ----------------------------------------------------~~knLqeSfr~yIqvE~l~GdN~Y~ae~ 363 (1089)
T COG5077 336 ----------------------------------------------------GMKNLQESFRRYIQVETLDGDNRYNAEK 363 (1089)
T ss_pred ----------------------------------------------------chhhHHHHHHHhhhheeccCCccccccc
Confidence 0126999999999999999999999976
Q ss_pred ccCcceeEEEEEeeeCCCeEEEEEEeeEec--ccccccCCeeeeccCCCCCCCCccccCCC---CCCccEEEEEEEEeec
Q 002138 814 CKKHWQASKKLDLWRSPDILVIHLKRFSFS--RYFKSKLDTYVDFPIDDLDLSNYVCCKNS---QLSNRYVLYAISNHYG 888 (960)
Q Consensus 814 Ck~~~~AtKk~~l~~lP~iLiIhLKRF~~~--~~~~~Ki~~~V~FPi~~LDls~~v~~~~~---~~~~~YdL~AVinH~G 888 (960)
-+ .|.|.|-.-+.++|+||-++||||.|+ +.+..||+..-+|| ..+||.||+..... ...+.|.||||.+|.|
T Consensus 364 ~G-lqdAkKGViFeSlPpVlhlqLKRFeyDfe~d~mvKINDryEFP-~eiDl~pfld~da~ksen~d~vY~LygVlVHsG 441 (1089)
T COG5077 364 HG-LQDAKKGVIFESLPPVLHLQLKRFEYDFERDMMVKINDRYEFP-LEIDLLPFLDRDADKSENSDAVYVLYGVLVHSG 441 (1089)
T ss_pred cc-chhhccceeeccCchHHHHHHHHhccccccCceeeecccccCc-chhccccccCchhhhhcccCcEEEEEEEEEecc
Confidence 53 489999999999999999999999997 77889999999999 59999999985432 2458999999999999
Q ss_pred CCCCCeEEEEEeccccchhhhhhhhhccccccccCCCcEEEEcCCcceecCcccccC----------------------C
Q 002138 889 GMGGGHYTAFVDIDYHSAFKQYEYLKTQITSVQLGHKRWFEFDDDRVYPVSEDNIKT----------------------S 946 (960)
Q Consensus 889 ~l~gGHYtAy~k~~~~~~~~~~~~~~~~~~~~~~~~~~Wy~fdDs~Vs~vs~~~v~s----------------------~ 946 (960)
.+.+|||+|+.|- ..+|+||+|||.+|+++++.+|.. -
T Consensus 442 Dl~~GHyYallKp--------------------e~dg~WykfdDtrVtrat~kevleeNfGgd~~~~~k~r~~~~~kRfm 501 (1089)
T COG5077 442 DLHEGHYYALLKP--------------------EKDGRWYKFDDTRVTRATEKEVLEENFGGDHPYKDKIRDHSGIKRFM 501 (1089)
T ss_pred ccCCceEEEEecc--------------------ccCCCceeecceehhhHHHHHHHHHhcCCCCCCcccccCCchhhhhh
Confidence 9999999999997 679999999999999999888851 3
Q ss_pred CeEEEEEEEecC
Q 002138 947 AAYVLFYKRVSD 958 (960)
Q Consensus 947 ~AYvLFY~R~~~ 958 (960)
+||||.|-|++-
T Consensus 502 sAYmLvYlRks~ 513 (1089)
T COG5077 502 SAYMLVYLRKSM 513 (1089)
T ss_pred hhheeeeehHhH
Confidence 689999999864
No 28
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.5e-39 Score=347.76 Aligned_cols=143 Identities=45% Similarity=0.758 Sum_probs=126.8
Q ss_pred CCHHHHHHHhhCccccCCCCCCCCcccc--CcceeEEEEEeeeCCCeEEEEEEeeEecc-cccccCCeeeeccCCCCCCC
Q 002138 788 VSLYKCLEAFLKEEPLGPEDMWYCPRCK--KHWQASKKLDLWRSPDILVIHLKRFSFSR-YFKSKLDTYVDFPIDDLDLS 864 (960)
Q Consensus 788 isL~dCL~~f~~~E~L~~~d~wyC~~Ck--~~~~AtKk~~l~~lP~iLiIhLKRF~~~~-~~~~Ki~~~V~FPi~~LDls 864 (960)
.+|++||+.++..|.+.+ ..|..|+ +.+.+.++..|.++|++|+|||+||.++. ....|+++.|.|| +.|++.
T Consensus 99 ~~l~~~l~~~~~~e~~~~---~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~k~~~~v~~~-~~l~~~ 174 (255)
T cd02257 99 VSLEDCLEKFFKEEILEG---DNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFNEDGTKEKLNTKVSFP-LELDLS 174 (255)
T ss_pred CcHHHHHHHhhhhhccCC---CCcccCCCCcccceeEEEecccCCceeEEEeeceeeccccccccCCCeEeCC-CcccCc
Confidence 479999999999998865 5788898 68899999999999999999999999987 7788999999999 699999
Q ss_pred Ccccc-----CCCCCCccEEEEEEEEeecC-CCCCeEEEEEeccccchhhhhhhhhccccccccCCCcEEEEcCCcceec
Q 002138 865 NYVCC-----KNSQLSNRYVLYAISNHYGG-MGGGHYTAFVDIDYHSAFKQYEYLKTQITSVQLGHKRWFEFDDDRVYPV 938 (960)
Q Consensus 865 ~~v~~-----~~~~~~~~YdL~AVinH~G~-l~gGHYtAy~k~~~~~~~~~~~~~~~~~~~~~~~~~~Wy~fdDs~Vs~v 938 (960)
.++.. ........|+|+|||+|.|. .++|||+||+|+ ...++||.|||..|+++
T Consensus 175 ~~~~~~~~~~~~~~~~~~Y~L~~vi~h~G~~~~~GHY~~~~~~--------------------~~~~~W~~~nD~~V~~v 234 (255)
T cd02257 175 PYLSEGEKDSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKD--------------------PSDGKWYKFNDDKVTEV 234 (255)
T ss_pred cccccccccccccCCCccEEEEEEEEEecCCCCCcCeEEEEeC--------------------CCCCceEEEeccccEEc
Confidence 98752 22336788999999999995 599999999999 44599999999999999
Q ss_pred Ccccc-----cCCCeEEEEEE
Q 002138 939 SEDNI-----KTSAAYVLFYK 954 (960)
Q Consensus 939 s~~~v-----~s~~AYvLFY~ 954 (960)
+.+++ ....||+|||+
T Consensus 235 ~~~~~~~~~~~~~~~yll~Y~ 255 (255)
T cd02257 235 SEEEVLEFGSLSSSAYILFYE 255 (255)
T ss_pred CHHHhhhccCCCCceEEEEEC
Confidence 99888 58899999996
No 29
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.4e-39 Score=353.45 Aligned_cols=140 Identities=24% Similarity=0.256 Sum_probs=117.1
Q ss_pred CCHHHHHHHhhCccccCCCCCCCCccccCcceeEEEEEeeeCCC----eEEEEEEeeEecc-------cccccCCeeeec
Q 002138 788 VSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPD----ILVIHLKRFSFSR-------YFKSKLDTYVDF 856 (960)
Q Consensus 788 isL~dCL~~f~~~E~L~~~d~wyC~~Ck~~~~AtKk~~l~~lP~----iLiIhLKRF~~~~-------~~~~Ki~~~V~F 856 (960)
++|.+||+.|+.+|.. +.|+|++|++++.|+|++.|+++|+ ||+||||||.+.. ....|++..|.|
T Consensus 117 ~sl~~cL~~~~~~E~~---~~~~C~~C~~~~~a~k~~~i~~lP~~L~~VL~i~lkrf~~~~~~~~~~~~~~~~~~~~v~f 193 (268)
T cd02672 117 STFLQLLKRSLDLEKV---TKAWCDTCCKYQPLEQTTSIRHLPDILLLVLVINLSVTNGEFDDINVVLPSGKVMQNKVSP 193 (268)
T ss_pred CCHHHHHHHHhhhhhc---ccccccccCcccccEEEEEeecCCCcccceEEEEEeccChhhcccCcceeEEEecCCeecc
Confidence 5899999999999964 5689999999999999999999999 9999999999753 234688899999
Q ss_pred cCCCCCCCCccccCCCCCCccEEEEEEEEeecC-CCCCeEEEEEeccccchhhhhhhhhccccccccCCCcEEEEcCCcc
Q 002138 857 PIDDLDLSNYVCCKNSQLSNRYVLYAISNHYGG-MGGGHYTAFVDIDYHSAFKQYEYLKTQITSVQLGHKRWFEFDDDRV 935 (960)
Q Consensus 857 Pi~~LDls~~v~~~~~~~~~~YdL~AVinH~G~-l~gGHYtAy~k~~~~~~~~~~~~~~~~~~~~~~~~~~Wy~fdDs~V 935 (960)
| ..+|+..+...... ...+|+|+|||+|.|. .++|||+||+|.+... ...++||.|||..|
T Consensus 194 ~-~~~~~~~~~~~~~~-~~~~Y~L~gvV~hig~~~~~GHyva~vk~~~~~----------------~~~~~WylFND~~V 255 (268)
T cd02672 194 K-AIDHDKLVKNRGQE-SIYKYELVGYVCEINDSSRGQHNVVFVIKVNEE----------------STHGRWYLFNDFLV 255 (268)
T ss_pred c-ccccchhhhccCCC-CCceEEEEEEEEEecCCCCCCcEEEEEEccCCC----------------CCCCcEEEecCeEE
Confidence 9 47777666544332 5688999999999994 5999999999981000 12689999999999
Q ss_pred eecCcccccCCCeEEEEEE
Q 002138 936 YPVSEDNIKTSAAYVLFYK 954 (960)
Q Consensus 936 s~vs~~~v~s~~AYvLFY~ 954 (960)
++|++ .||||||+
T Consensus 256 ~~vs~------~aYiLfY~ 268 (268)
T cd02672 256 TPVSE------LAYILLYQ 268 (268)
T ss_pred EEcCc------hheeeecC
Confidence 99998 89999995
No 30
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-40 Score=368.23 Aligned_cols=150 Identities=35% Similarity=0.650 Sum_probs=138.1
Q ss_pred CHHHHHHHhhCccccCCCCCCCCccccCcceeEEEEEeeeCCCeEEEEEEeeEec--ccccccCCeeeeccCCCCCCCCc
Q 002138 789 SLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFS--RYFKSKLDTYVDFPIDDLDLSNY 866 (960)
Q Consensus 789 sL~dCL~~f~~~E~L~~~d~wyC~~Ck~~~~AtKk~~l~~lP~iLiIhLKRF~~~--~~~~~Ki~~~V~FPi~~LDls~~ 866 (960)
+++++|.+|.++|.|++.|.|-|++||+++.|.|-+.|.+.|-+|.||||||.|+ ...|.|++..|.|| ..|||..|
T Consensus 215 sieeal~afvqpe~ldg~nqy~ce~ck~k~dahkgl~~~~fpy~lt~~lkrfdfdy~tmhriklnd~~tfp-~~l~ln~~ 293 (1203)
T KOG4598|consen 215 SVEEALTAFVQPELLDGSNQYMCENCKSKQDAHKGLRITQFPYLLTIQLKRFDFDYNTMHRIKLNDKMTFP-DVLDLNDY 293 (1203)
T ss_pred hHHHHHHHhcChhhcCCccHHHHhhhhhhhhhhcCceeeccceeeEEeeecccccchheeeeeecccccCc-ccccHHHh
Confidence 7899999999999999999999999999999999999999999999999999876 56789999999999 89999999
Q ss_pred cccCCCC-----------------------------------------------------------------CCccEEEE
Q 002138 867 VCCKNSQ-----------------------------------------------------------------LSNRYVLY 881 (960)
Q Consensus 867 v~~~~~~-----------------------------------------------------------------~~~~YdL~ 881 (960)
+-..... ++..|+|+
T Consensus 294 in~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~n~~~g~~~~~~~~~~~~~~sg~~~yelf 373 (1203)
T KOG4598|consen 294 VNKEKRSTTSSAWQQIGKNKSENEEDDMELGSPNPKRCTPGVQSPNRYQGSENVCVGQPIDHAAVDDIVKTSGDNVYELF 373 (1203)
T ss_pred hhhccCCcchhHhhhcccccccccccccccCCCCcccCcccccCcccccCccccccCCcCchhhhhhHhhcCCccHHHhh
Confidence 9633110 78999999
Q ss_pred EEEEeecCCCCCeEEEEEeccccchhhhhhhhhccccccccCCCcEEEEcCCcceecCccccc-------------CCCe
Q 002138 882 AISNHYGGMGGGHYTAFVDIDYHSAFKQYEYLKTQITSVQLGHKRWFEFDDDRVYPVSEDNIK-------------TSAA 948 (960)
Q Consensus 882 AVinH~G~l~gGHYtAy~k~~~~~~~~~~~~~~~~~~~~~~~~~~Wy~fdDs~Vs~vs~~~v~-------------s~~A 948 (960)
||..|.|+..||||.||+|+ .+.+.||+|||.+|+-++..+|. +.+|
T Consensus 374 ~imihsg~a~gghy~ayik~--------------------~d~~~w~~fnd~~v~~~t~~~i~~sfgg~~~~~~~s~tna 433 (1203)
T KOG4598|consen 374 SVMVHSGNAAGGHYFAYIKN--------------------LDQDRWYVFNDTRVDFATPLEIEKSFGGHPSGWNQSNTNA 433 (1203)
T ss_pred hhheecCCCCCceeeeeecc--------------------cCcCceEEecCccccccCHHHHHHhhCCCCCCccccCcch
Confidence 99999999999999999999 89999999999999999998886 4689
Q ss_pred EEEEEEEecCC
Q 002138 949 YVLFYKRVSDV 959 (960)
Q Consensus 949 YvLFY~R~~~~ 959 (960)
|||.|||+|.-
T Consensus 434 ymlmyr~id~k 444 (1203)
T KOG4598|consen 434 YMLMYRRIDPK 444 (1203)
T ss_pred hhhhhhhcCcc
Confidence 99999999853
No 31
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-36 Score=327.97 Aligned_cols=144 Identities=28% Similarity=0.402 Sum_probs=115.1
Q ss_pred ccccccCCCccchHHHHHHHhcChHHHHHHHhcccccc-ccCCCCCCchHHHHHHHHHHHHhcCCC----CCccChHHHH
Q 002138 339 LTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEI-NYENPLGLNGELALAFGDLLRKLWAPG----GIPVAPRMFK 413 (960)
Q Consensus 339 ~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~-~~~n~~~~~~~l~~al~~L~~~l~~~~----~~~i~P~~f~ 413 (960)
.+||.|+||+||+||++|.|++...+..-+....+..+ ...+| ..+|.+++.+|+..|.... ...+.|..|+
T Consensus 303 ~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~~P---~~~l~CQl~kll~~mk~~p~~~y~ngi~p~~fk 379 (749)
T COG5207 303 YVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNP---LECLFCQLMKLLSKMKETPDNEYVNGISPLDFK 379 (749)
T ss_pred ccceEecCCeeeHHHHHHHHhccccchhhhhhhccceeeeecCC---chhHHHHHHHHHhhccCCCCccccCCcChhhHH
Confidence 89999999999999999999999888776654322222 22344 3578999999999887644 2358999999
Q ss_pred HHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCccccccceEEE
Q 002138 414 LKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYR 493 (960)
Q Consensus 414 ~~l~~~~~~F~~~~QQDA~EfL~~LLd~L~eel~~~~~kp~~e~~d~~~~~~~~~a~e~w~~~~~~n~SiI~~lF~G~~~ 493 (960)
..+++-.|.|..++||||||||.|||+.|.+...... .+.|.++|...+.
T Consensus 380 ~~igq~h~eFg~~~QQDA~EFLlfLL~kirk~~~S~~------------------------------~~~It~lf~Fe~e 429 (749)
T COG5207 380 MLIGQDHPEFGKFAQQDAHEFLLFLLEKIRKGERSYL------------------------------IPPITSLFEFEVE 429 (749)
T ss_pred HHHcCCchhhhhhhhhhHHHHHHHHHHHHhhccchhc------------------------------CCCcchhhhhhhc
Confidence 9999999999999999999999999999985432211 2459999999999
Q ss_pred EEEeeCCCCCeeeeecCCeeEE
Q 002138 494 SMLVCPVCNKVSVTFDPLMYLS 515 (960)
Q Consensus 494 s~l~C~~C~~~S~~~epf~~Ls 515 (960)
.++.|..|+.++..+++...+.
T Consensus 430 ~rlsC~~C~~v~ySye~~~~i~ 451 (749)
T COG5207 430 RRLSCSGCMDVSYSYESMLMIC 451 (749)
T ss_pred ceecccccccccccccceEEEE
Confidence 9999999999988876643333
No 32
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-35 Score=369.52 Aligned_cols=300 Identities=28% Similarity=0.385 Sum_probs=252.4
Q ss_pred cccc-cccccCCCccchHHHHHHHhcChHHHHHHHhccccccccCCCCCCchHHHHHHHHHHHHhcCCCCCccChHHHHH
Q 002138 336 LLGL-TGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKL 414 (960)
Q Consensus 336 ~~g~-~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~al~~L~~~l~~~~~~~i~P~~f~~ 414 (960)
..|. +||.|+||||||||+||+|+.++.||+.+...-. ..........+..+|+.||..|..+...+|.|..+..
T Consensus 166 ~tg~~vGL~N~GaTCY~NsllQ~lf~~~~FR~~Vy~~~~----~~~~~~~~~~v~~~lq~lF~~LQ~s~~k~Vdt~~~~~ 241 (1093)
T KOG1863|consen 166 LTGFPVGLKNLGATCYVNSLLQVLFLIPEFRRAVYSIPP----FTGHEDPRRSIPLALQRLFYELQMSKRKYVDTSELTK 241 (1093)
T ss_pred cCCCCccccCCCceeeehHHHHHHHccHHHHHHHhcCCC----CCCcccccchHHHHHHHHHHHHhhcCCCCcCchhhhh
Confidence 4455 9999999999999999999999999998875421 1122223345999999999999888888999999999
Q ss_pred HHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCccccccceEEEE
Q 002138 415 KLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRS 494 (960)
Q Consensus 415 ~l~~~~~~F~~~~QQDA~EfL~~LLd~L~eel~~~~~kp~~e~~d~~~~~~~~~a~e~w~~~~~~n~SiI~~lF~G~~~s 494 (960)
.++... ..+++|||+|||+..|+|.|+..+..... ...|.++|.|.+++
T Consensus 242 ~~~~~~--~~~~~QqDvqEf~~~l~d~LE~~~~~~~~-----------------------------~~~l~~lf~g~~~~ 290 (1093)
T KOG1863|consen 242 SLGWDS--NDSFEQQDVQEFLTKLLDWLEDSMIDAKV-----------------------------ENTLQDLFTGKMKS 290 (1093)
T ss_pred hhhccc--ccHHhhhhHHHHHHHHHHHHHhhccchhh-----------------------------hhhhhhhhcCCcce
Confidence 998766 56779999999999999999977654321 23489999999999
Q ss_pred EEeeCCCCCeeeeecCCeeEEecCCCCCccceEEEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhcccCCccceeee
Q 002138 495 MLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVA 574 (960)
Q Consensus 495 ~l~C~~C~~~S~~~epf~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~ 574 (960)
.+.|..|...+.+.|.|+++.|++-
T Consensus 291 ~i~c~~~~~~s~r~e~f~d~ql~~~------------------------------------------------------- 315 (1093)
T KOG1863|consen 291 VIKCIDVDFESSRSESFLDLQLNGK------------------------------------------------------- 315 (1093)
T ss_pred EEEEEeeeeeccccccccCcccccc-------------------------------------------------------
Confidence 9999999999888888877776542
Q ss_pred eeeccceeeecCCCccccccccCCCcEEEEEcCCCCCCCceEEeeeeccccccccccccccceeeccceEEecCCCCChh
Q 002138 575 EIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNGS 654 (960)
Q Consensus 575 e~~~~~~~~~~~~~~~~~~~I~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~ 654 (960)
T Consensus 316 -------------------------------------------------------------------------------- 315 (1093)
T KOG1863|consen 316 -------------------------------------------------------------------------------- 315 (1093)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCCCcCCCCCCCCcccccccCCCCCCccccccccccCCCCCCCCCCcCCCCCCCCCCceEEEecCCCCccc
Q 002138 655 DIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTEI 734 (960)
Q Consensus 655 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (960)
T Consensus 316 -------------------------------------------------------------------------------- 315 (1093)
T KOG1863|consen 316 -------------------------------------------------------------------------------- 315 (1093)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCcCCCCCCeEEEEecChhhHHhhhhhhhhhhhhhcccccccCCCCCCCCHHHHHHHhhCccccCCCCCCCCccc
Q 002138 735 KMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPRC 814 (960)
Q Consensus 735 ~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~dCL~~f~~~E~L~~~d~wyC~~C 814 (960)
...+|.++|+.|+..|.|.+++. ||..|
T Consensus 316 ---------------------------------------------------g~~nl~~sf~~y~~~E~l~gdn~-~~~~~ 343 (1093)
T KOG1863|consen 316 ---------------------------------------------------GVKNLEDSLHLYFEAEILLGDNK-YDAEC 343 (1093)
T ss_pred ---------------------------------------------------chhhHHHHHHHhhhHHHhcCCcc-ccccc
Confidence 01258899999999999999998 99999
Q ss_pred cCcceeEEEEEeeeCCCeEEEEEEeeEec--ccccccCCeeeeccCCCCCCCCccccC--CCC-CCccEEEEEEEEeecC
Q 002138 815 KKHWQASKKLDLWRSPDILVIHLKRFSFS--RYFKSKLDTYVDFPIDDLDLSNYVCCK--NSQ-LSNRYVLYAISNHYGG 889 (960)
Q Consensus 815 k~~~~AtKk~~l~~lP~iLiIhLKRF~~~--~~~~~Ki~~~V~FPi~~LDls~~v~~~--~~~-~~~~YdL~AVinH~G~ 889 (960)
...+.|.|.+.+.+||+||.|||+||.|+ +....||.....|| ..|+|.+|+..+ ... ..+.|+|+||..|.|.
T Consensus 344 ~~~~~a~k~~~f~~lPpvl~~qL~Rf~~~~~~~~~~Ki~d~~~fp-~~i~~d~~~~~~~~~~~~~~~~y~l~~v~vh~g~ 422 (1093)
T KOG1863|consen 344 HGLQDAKKGVLFDSLPPVLFIQLMRFEYDFSTGQKIKINDKFEFP-LIIDMDRYLSRFKAEESERSAVYSLHAVLVHSGD 422 (1093)
T ss_pred cchhhhhcceeeccCCchhhhhhhheeeeccCCceeehhhccCCc-cccccchhccccchhhhhccceeccchhhccccc
Confidence 99999999999999999999999999997 56678999999999 599999998741 111 3359999999999889
Q ss_pred CCCCeEEEEEeccccchhhhhhhhhccccccccCCCcEEEEcCCcceecCcccccC----------------CCeEEEEE
Q 002138 890 MGGGHYTAFVDIDYHSAFKQYEYLKTQITSVQLGHKRWFEFDDDRVYPVSEDNIKT----------------SAAYVLFY 953 (960)
Q Consensus 890 l~gGHYtAy~k~~~~~~~~~~~~~~~~~~~~~~~~~~Wy~fdDs~Vs~vs~~~v~s----------------~~AYvLFY 953 (960)
..+|||++|++. ...++|+.|||..|+.+++.++.. +.||+|+|
T Consensus 423 ~~~ghy~~~i~~--------------------~~~~~w~kfdd~~v~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~lv~ 482 (1093)
T KOG1863|consen 423 AHSGHYVAYINP--------------------KLDGKWVKFDDLVVTVVSEKEALEQNYGTEEIELSSTADFKNAYMLVY 482 (1093)
T ss_pred ccCccceeeecc--------------------hhhccceeccCceeeeccHHHHHHhhCCCcchhhhcccccCCcceEEE
Confidence 999999999997 679999999999999999766641 22899999
Q ss_pred EEecC
Q 002138 954 KRVSD 958 (960)
Q Consensus 954 ~R~~~ 958 (960)
-|.+.
T Consensus 483 ~~~s~ 487 (1093)
T KOG1863|consen 483 IRDSC 487 (1093)
T ss_pred EecCc
Confidence 99864
No 33
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.2e-34 Score=304.39 Aligned_cols=135 Identities=25% Similarity=0.410 Sum_probs=109.4
Q ss_pred CCCHHHHHHHhhCccccCCCCCCCCccccCcceeEEEEEeeeCCCeEEEEEEeeEecccccccCCeeeeccCCCCCCCCc
Q 002138 787 SVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLSNY 866 (960)
Q Consensus 787 ~isL~dCL~~f~~~E~L~~~d~wyC~~Ck~~~~AtKk~~l~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~ 866 (960)
.+||++||+.|++.|. |+++|+|||||||||.++.+...|+++.|.|| ..|||++|
T Consensus 79 ~~tLedcLe~~~~~e~-----------------------i~~lP~vLiIhLKRF~~~~~~~~Kl~~~I~fP-~~Ldl~~~ 134 (241)
T cd02670 79 GITLEQCLEQYFNNSV-----------------------FAKAPSCLIICLKRYGKTEGKAQKMFKKILIP-DEIDIPDF 134 (241)
T ss_pred cCCHHHHHHHHhchhh-----------------------hhhCCCeEEEEEEccccCCCcceeCCcEECCC-CcCCchhh
Confidence 4699999999999996 99999999999999999887778999999999 69999999
Q ss_pred cccCC---------------------CCCCccEEEEEEEEeec-CCCCCeEEEEEeccccchhhhhhhhhccccccccCC
Q 002138 867 VCCKN---------------------SQLSNRYVLYAISNHYG-GMGGGHYTAFVDIDYHSAFKQYEYLKTQITSVQLGH 924 (960)
Q Consensus 867 v~~~~---------------------~~~~~~YdL~AVinH~G-~l~gGHYtAy~k~~~~~~~~~~~~~~~~~~~~~~~~ 924 (960)
+.... ......|+|+|||+|.| ++.+||||||+|+....... ......+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G~s~~sGHYva~vr~~~~~~~~---------~~~~~~~ 205 (241)
T cd02670 135 VADDPRACSKCQLECRVCYDDKDFSPTCGKFKLSLCSAVCHRGTSLETGHYVAFVRYGSYSLTE---------TDNEAYN 205 (241)
T ss_pred cccccccccccccccccccccccccCCCCCeEEEEEEEEEeCCCCCCCcCeEEEEECCcccccc---------cccCCCC
Confidence 86531 12457899999999999 69999999999982100000 0011235
Q ss_pred CcEEEEcCCcceecCc------ccccCCCeEEEEEE
Q 002138 925 KRWFEFDDDRVYPVSE------DNIKTSAAYVLFYK 954 (960)
Q Consensus 925 ~~Wy~fdDs~Vs~vs~------~~v~s~~AYvLFY~ 954 (960)
++||+|||+.|+.+.. +.+.+.+|||||||
T Consensus 206 ~~W~~FDD~~v~~~~~~~~~~~~~~~~~~aYmLFYq 241 (241)
T cd02670 206 AQWVFFDDMADRDGVSNGFNIPAARLLEDPYMLFYQ 241 (241)
T ss_pred CeEEEecCcccccccccccccchhcccCCceEEEeC
Confidence 8999999999988753 25678999999996
No 34
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-33 Score=327.33 Aligned_cols=330 Identities=27% Similarity=0.418 Sum_probs=248.3
Q ss_pred ccccccccccCCCccchH--HHHHHHhcChHHHHHHHhccccccccCCCCCCchHHHHHHHHHHHHhcCC--CCCccChH
Q 002138 335 CLLGLTGLRNLGNTCFMN--SAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAP--GGIPVAPR 410 (960)
Q Consensus 335 ~~~g~~GL~NlGNTCYmN--SvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~al~~L~~~l~~~--~~~~i~P~ 410 (960)
.....-|..|.+++|+-| ++.|.+..+-++++..+.... ......+....+...+..++...-.. ....+.|.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~p~ 304 (587)
T KOG1864|consen 228 ANERVFGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLT---SLKRSYIIKEELLTCLLDLFSSISSRKKLVGRISPT 304 (587)
T ss_pred ccccccCccccCccccccchhhHHHHHhhhhhcccccchhh---cccchhhhhHHHHHHhhhhccchhhhcccccccCcc
Confidence 345778999999999999 999999998888754332111 11111122334444454554433221 22458999
Q ss_pred HHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCC--ccccCCCCCChHHHHHHHHH--hhhccCCCcccc
Q 002138 411 MFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPY--LEAKDAEGQPEEEVAEEYWR--NHRARNDSIIVD 486 (960)
Q Consensus 411 ~f~~~l~~~~~~F~~~~QQDA~EfL~~LLd~L~eel~~~~~kp~--~e~~d~~~~~~~~~a~e~w~--~~~~~n~SiI~~ 486 (960)
.|...+++.+..|..+.|||||||+.++++.++|.+.+...... +....++|..... |.-.|. .+......++..
T Consensus 305 ~~~~~~~~~~~~f~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~~-~~~~~~~~~~~~~~~~~v~~ 383 (587)
T KOG1864|consen 305 RFISDLIKENELFTNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSSTS-AASWTNKGHHKSLRENWVSK 383 (587)
T ss_pred hhhhhhhhcCCccCchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCccccc-cccccccccccccchhHHHH
Confidence 99999999999999999999999999999999998765432111 1111112221111 100110 344556678999
Q ss_pred ccceEEEEEEeeCCCCCeeeeecCCeeEEecCCCCCccceEEEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhcccC
Q 002138 487 LCQGQYRSMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLR 566 (960)
Q Consensus 487 lF~G~~~s~l~C~~C~~~S~~~epf~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~ 566 (960)
+|.|++..+..|..|+.++.+.+.|.+++++++..
T Consensus 384 lf~g~l~~et~Clsc~t~T~~de~f~D~~~~v~~d--------------------------------------------- 418 (587)
T KOG1864|consen 384 LFQGILTNETRCLSCETITSRDEGFLDLSVAVEID--------------------------------------------- 418 (587)
T ss_pred hhcCeeeeeeeeccccccccccccccccceecccc---------------------------------------------
Confidence 99999999999999999999999998888876521
Q ss_pred CccceeeeeeeccceeeecCCCccccccccCCCcEEEEEcCCCCCCCceEEeeeeccccccccccccccceeeccceEEe
Q 002138 567 NHEKLLVAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGR 646 (960)
Q Consensus 567 ~~~~l~~~e~~~~~~~~~~~~~~~~~~~I~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~ 646 (960)
T Consensus 419 -------------------------------------------------------------------------------- 418 (587)
T KOG1864|consen 419 -------------------------------------------------------------------------------- 418 (587)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCChhHHHHHHHHhcCCCcCCCCCCCCcccccccCCCCCCccccccccccCCCCCCCCCCcCCCCCCCCCCceEEEe
Q 002138 647 LSDLTNGSDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRL 726 (960)
Q Consensus 647 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (960)
T Consensus 419 -------------------------------------------------------------------------------- 418 (587)
T KOG1864|consen 419 -------------------------------------------------------------------------------- 418 (587)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCcccccCCCCCcCCCCCCeEEEEecChhhHHhhhhhhhhhhhhhcccccccCCCCCCCCHHHHHHHhhCccccCCC
Q 002138 727 DSIRPTEIKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPE 806 (960)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~dCL~~f~~~E~L~~~ 806 (960)
+..++..||+.|..+|.|.++
T Consensus 419 -----------------------------------------------------------e~~si~~~l~~~~~~e~l~g~ 439 (587)
T KOG1864|consen 419 -----------------------------------------------------------ENTSITNLLKSFSSTETLSGE 439 (587)
T ss_pred -----------------------------------------------------------ccccHHHHHHHhcchhhccCC
Confidence 113788999999999999999
Q ss_pred CCCCCccccCcceeEEEEEeeeCCCeEEEEEEeeEecccc--cccCCeeeeccCCCCCCCCccccCCCCCCccEEEEEEE
Q 002138 807 DMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYF--KSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAIS 884 (960)
Q Consensus 807 d~wyC~~Ck~~~~AtKk~~l~~lP~iLiIhLKRF~~~~~~--~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~AVi 884 (960)
++++|++|...|.|.|.+.+.++|.+|+||||||+|.+.. ..|+...|.||+ .|.+...+.+... +...|+|+|||
T Consensus 440 nky~c~~c~s~qeae~~l~~k~lp~~L~l~Lkrfk~~~~~~~~~kl~~~v~~pl-el~l~~~~~~~~~-~~~~Y~L~avV 517 (587)
T KOG1864|consen 440 NKYSCENCCSLQEAERRLKIKKLPYVLTLHLKRFKYSEQQNRYTKLLYRVVFPL-ELRLKDTLKDDNN-PDRKYDLVAVV 517 (587)
T ss_pred CcccccccCchhhHHHhccccCCcceeeeehhcccccccccccccccccccccc-ceeeccccccccC-ccceeeEEEEE
Confidence 9999999999999999999999999999999999998532 469999999996 8888665544332 24789999999
Q ss_pred Eeec-CCCCCeEEEEEeccccchhhhhhhhhccccccccCCCcEEEEcCCcceecCccccc---CCCeEEEEEEE
Q 002138 885 NHYG-GMGGGHYTAFVDIDYHSAFKQYEYLKTQITSVQLGHKRWFEFDDDRVYPVSEDNIK---TSAAYVLFYKR 955 (960)
Q Consensus 885 nH~G-~l~gGHYtAy~k~~~~~~~~~~~~~~~~~~~~~~~~~~Wy~fdDs~Vs~vs~~~v~---s~~AYvLFY~R 955 (960)
+|.| ++..|||+||+|. .+..|+.|||..|+.++++.|. ..+.|++||.+
T Consensus 518 vH~G~~p~~GHYia~~r~---------------------~~~nWl~fdD~~V~~~s~~~v~~~~~~s~~~~~~~~ 571 (587)
T KOG1864|consen 518 VHLGSTPNRGHYVAYVKS---------------------LDFNWLLFDDDNVEPISEEPVSEFTGSSGDTLFYYV 571 (587)
T ss_pred EeccCCCCCcceEEEEee---------------------CCCCceecccccccccCcchhhhccCCCccceeeeE
Confidence 9999 9999999999998 2333999999999999988886 45667777754
No 35
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.3e-31 Score=290.60 Aligned_cols=244 Identities=20% Similarity=0.209 Sum_probs=176.7
Q ss_pred CCeEEEE-EccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEeecCcccCccC
Q 002138 208 TNSLLVK-ISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQVHGFSDSVGE 286 (960)
Q Consensus 208 ~~~~~~~-~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~~g~w~~~~~ 286 (960)
++.+.+. ++..+|...++.++..+.++++++.+|.. +..++.|. -.+..+.+++|..+++ +|+
T Consensus 12 gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~v-----KGg~a~dd-~~~~al~iKpn~~lmM----------mGt 75 (473)
T KOG1872|consen 12 GKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMV-----KGGLAKDD-VDWGALQIKPNETLMM----------MGT 75 (473)
T ss_pred CccccceeccCCCchHHHHHHHHHhcCCCccceeEEE-----eccccccc-ccccccccCCCCEEEe----------ecc
Confidence 3445555 89999999999999999999999999874 34556654 3567789999999999 444
Q ss_pred ccccccccccccccccCCcccccCCCCCCCcccccCCccccCCCCCccccccccccccCCCccchHHHHHHHhcChHHHH
Q 002138 287 TNDEMAEHYKIIDSICNGSVKINGSNDNLNSYITSSNSVRRGSGNGGVCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVD 366 (960)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~ 366 (960)
+. +.++++.....+.+++.... .....+-++||.|+|||||||+.+|||-.+|++..
T Consensus 76 ~e-~~~e~p~~~~~~~ed~~e~~----------------------~~~~~~lp~gl~nlgNtcymnrtVq~lk~v~el~~ 132 (473)
T KOG1872|consen 76 AE-AGLEPPSLPPTFIEDSAEQF----------------------ASAALPLPVGLPNLGNTCYMNRTVQCLKGVPELPD 132 (473)
T ss_pred cc-ccccCcccCCcchhhhhHHH----------------------HHhhccCCccccchhHHHHhhhhhhhhhcCccCcc
Confidence 42 24444444333444333211 11234567899999999999999999999999988
Q ss_pred HHHhccccccccCCCCCCchHHHHHHHHHHHHhcCCCCCccChHHHHHHHhhcCCCCCC------CCCCCHHHHHHHHHH
Q 002138 367 YFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKLKLANFAPQFSG------YNQHDSQEFLAFLLD 440 (960)
Q Consensus 367 ~~l~~~~~~~~~~n~~~~~~~l~~al~~L~~~l~~~~~~~i~P~~f~~~l~~~~~~F~~------~~QQDA~EfL~~LLd 440 (960)
.+... .........+.....+..+++.+|+.|... .++.|..+...+.+..|+|.- +.||||.|+++.++-
T Consensus 133 ~~s~~-~~~~~~~~t~~~a~~i~~~mR~~f~~~~~~--~~v~pi~llqtl~~~~Pqfa~~~~~g~~~qqda~ec~~~~m~ 209 (473)
T KOG1872|consen 133 ALSLY-KRKRGRGDTWERRRRISIETRTCFRPLCEK--GAVAPINLLQTLSSQYPQFAEWVEYGIYMQQDAAECWMEEPG 209 (473)
T ss_pred hhhcc-chhccCCchhhhhhhHHHHHHHHHHhhhcc--CCcchHHHHHHHHHHhHHHHHHhhhhhHHHHHHhHhHHHhhh
Confidence 76432 211111222233467889999999999665 899999999999999999985 999999999999999
Q ss_pred HHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCccccccceEEEEEEeeCCCCCeeee--ecCCeeEEecC
Q 002138 441 GLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVCPVCNKVSVT--FDPLMYLSLPI 518 (960)
Q Consensus 441 ~L~eel~~~~~kp~~e~~d~~~~~~~~~a~e~w~~~~~~n~SiI~~lF~G~~~s~l~C~~C~~~S~~--~epf~~LsL~i 518 (960)
.+|+-+......+ ++.+.+..+|++++..+..|.+-...... .|.|..|++-|
T Consensus 210 ~l~~~~~~~~~~~-------------------------~~~~~~d~~f~~~~~~t~~~~e~e~~~~~~~~E~~~~L~c~i 264 (473)
T KOG1872|consen 210 MLTEALTVATEAP-------------------------CLEAEAAAGFGAEFSTTMSCSEGEDEGGGAGRELVDQLKCII 264 (473)
T ss_pred heecccccccccc-------------------------chhHHHHHhhccccccceeeccCcccccccccccccccceEE
Confidence 9997654322110 34456888999999999999887765443 55565555544
No 36
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=99.96 E-value=1.1e-28 Score=273.86 Aligned_cols=287 Identities=23% Similarity=0.354 Sum_probs=231.1
Q ss_pred cccccCCCccchHHHHHHHhcChHHHHHHHhccccccccCCCCCCchHHHHHHHHHHHHhc-CCCCCccChHHHHHHHhh
Q 002138 340 TGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLW-APGGIPVAPRMFKLKLAN 418 (960)
Q Consensus 340 ~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~al~~L~~~l~-~~~~~~i~P~~f~~~l~~ 418 (960)
.||.|-+++||+||+||+|+++|++++.++.+. . .....+|+++|+-||..|. .+......+..|.++++.
T Consensus 1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~-~-------c~~e~cL~cELgfLf~ml~~~~~g~~cq~sNflr~l~~ 72 (295)
T PF13423_consen 1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL-E-------CPKEFCLLCELGFLFDMLDSKAKGINCQASNFLRALSW 72 (295)
T ss_pred CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc-C-------CCccccHHHHHHHHHHHhhhhcCCCcChHHHHHHHHhc
Confidence 599999999999999999999999999998664 1 1234679999999999998 777778899999999987
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCccccccceEEEEEEee
Q 002138 419 FAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVC 498 (960)
Q Consensus 419 ~~~~F~~~~QQDA~EfL~~LLd~L~eel~~~~~kp~~e~~d~~~~~~~~~a~e~w~~~~~~n~SiI~~lF~G~~~s~l~C 498 (960)
......-+.|+|.|+|..|||+.|+.++............ .......+.|.++|+.......+|
T Consensus 73 ~~~a~~l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~~~~----------------~~~~~~~~~i~~~f~~~~~~~~~c 136 (295)
T PF13423_consen 73 IPEAAALGLQQDIQSLNRFLLEQLSMELLTFKPDIFHTSE----------------NSSSSPESSISQLFGTSFETTIRC 136 (295)
T ss_pred CHHHHhcchhHHHHHHHHHHHHHHhHHHHhcCcccccccc----------------cccCCCcchHHHHhCcceeeeecc
Confidence 7543445669999999999999999998765542111000 011223467999999999999999
Q ss_pred CCCCCeeeeecCCeeEEecCCCCCccceEEEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhcccCCccceeeeeeec
Q 002138 499 PVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYR 578 (960)
Q Consensus 499 ~~C~~~S~~~epf~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~e~~~ 578 (960)
..|+..+++.+....+.|..|...
T Consensus 137 ~~c~~~~~~~~~~~~~~l~yp~~~-------------------------------------------------------- 160 (295)
T PF13423_consen 137 TSCGHESVKESSTLVLDLPYPPSN-------------------------------------------------------- 160 (295)
T ss_pred cccCCeEEeecceeeeeccCCCCC--------------------------------------------------------
Confidence 999999888776655555544210
Q ss_pred cceeeecCCCccccccccCCCcEEEEEcCCCCCCCceEEeeeeccccccccccccccceeeccceEEecCCCCChhHHHH
Q 002138 579 SKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNGSDIRK 658 (960)
Q Consensus 579 ~~~~~~~~~~~~~~~~I~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~l~~ 658 (960)
T Consensus 161 -------------------------------------------------------------------------------- 160 (295)
T PF13423_consen 161 -------------------------------------------------------------------------------- 160 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCCCcCCCCCCCCcccccccCCCCCCccccccccccCCCCCCCCCCcCCCCCCCCCCceEEEecCCCCcccccCC
Q 002138 659 LFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTEIKMNE 738 (960)
Q Consensus 659 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (960)
T Consensus 161 -------------------------------------------------------------------------------- 160 (295)
T PF13423_consen 161 -------------------------------------------------------------------------------- 160 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcCCCCCCeEEEEecChhhHHhhhhhhhhhhhhhcccccccCCCCCCCCHHHHHHHhhCccccCCCCCCCCccccCcc
Q 002138 739 PLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHW 818 (960)
Q Consensus 739 ~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~dCL~~f~~~E~L~~~d~wyC~~Ck~~~ 818 (960)
..+++.++|+..+..|+... ..|++|++.+
T Consensus 161 -----------------------------------------------~~~tf~~~Le~sl~~e~~~~---a~C~~C~~~~ 190 (295)
T PF13423_consen 161 -----------------------------------------------SNVTFSQVLEHSLNREQQTR---AWCEKCNKYQ 190 (295)
T ss_pred -----------------------------------------------ccchHHHHHHHHHhhccccc---cccccccccc
Confidence 12478888988888888754 8999999999
Q ss_pred eeEEEEEeeeCCCeEEEEEEeeEecccccccCCeeeeccCCCCCCCCccccCC------CCCCccEEEEEEEEeec-CCC
Q 002138 819 QASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLSNYVCCKN------SQLSNRYVLYAISNHYG-GMG 891 (960)
Q Consensus 819 ~AtKk~~l~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~~~~------~~~~~~YdL~AVinH~G-~l~ 891 (960)
.+..+..|.+||+||.|.++|.+....+..|....+.+|. .+++..++.... .....+|+|.|+|+|.| +..
T Consensus 191 ~~~~~r~i~~LPpVL~In~~~~~~~~~w~~~~~~~~~ip~-~i~~~~~~~~~~~~~~~~~~~~~~Y~L~~~V~~i~~~~~ 269 (295)
T PF13423_consen 191 PTEQRRTIRSLPPVLSINLNRYSEEEFWPKKNWLKIWIPP-SINLPHFIADDSQSDLEGESGIFKYELRSMVCHIGDSIE 269 (295)
T ss_pred ceeeeeeccCCCcEEEEEccCCCcccccccccCCceecce-eeeccccccccccccccCCCCceEEEEEEEEEEecCCCC
Confidence 9999999999999999999999999777889999999995 799998886542 34678999999999999 699
Q ss_pred CCeEEEEEeccccchhhhhhhhhccccccccCCCcEEEEcCCcc
Q 002138 892 GGHYTAFVDIDYHSAFKQYEYLKTQITSVQLGHKRWFEFDDDRV 935 (960)
Q Consensus 892 gGHYtAy~k~~~~~~~~~~~~~~~~~~~~~~~~~~Wy~fdDs~V 935 (960)
+|||+||+|.+. ..+.+||.|||-.|
T Consensus 270 ~~HlVs~vrv~~------------------~~~~~W~lFNDflV 295 (295)
T PF13423_consen 270 SGHLVSLVRVGP------------------SDDSQWYLFNDFLV 295 (295)
T ss_pred CCceEEEEEcCC------------------CCCCcEEEECcEeC
Confidence 999999999810 12378999999765
No 37
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.6e-29 Score=271.20 Aligned_cols=123 Identities=24% Similarity=0.419 Sum_probs=103.6
Q ss_pred ccCcceeEEEEEeeeCCCeEEEEEEeeEec-ccccccCCeeeeccCCCCCCCCcccc-----CCCCCCccEEEEEEEEee
Q 002138 814 CKKHWQASKKLDLWRSPDILVIHLKRFSFS-RYFKSKLDTYVDFPIDDLDLSNYVCC-----KNSQLSNRYVLYAISNHY 887 (960)
Q Consensus 814 Ck~~~~AtKk~~l~~lP~iLiIhLKRF~~~-~~~~~Ki~~~V~FPi~~LDls~~v~~-----~~~~~~~~YdL~AVinH~ 887 (960)
-+..+.|++++.|.+||++|++|||||.|. .+..+|+...++||. .|.++.-+.. +.......|+|.||+.|.
T Consensus 287 s~~eV~~s~q~~leklp~vlilhlkrF~ye~tgg~~k~~K~i~~~~-~l~i~~~~~s~gvk~~~~~~~~~yks~~vvyht 365 (420)
T KOG1871|consen 287 SGQEVEASSQTTLEKLPPVLILHLKRFVYEKTGGARKLGKKIEYPW-TLKISKNCFSQGLKIRILIATRPYKSLAVVYHT 365 (420)
T ss_pred CCCeechhhhhhHhhcchhhhhhhhHHHHHhccchhhhchhhhccc-eeeechhhhccccchhhhccccccceEEEEEec
Confidence 345567899999999999999999999998 566789999999994 7776654432 222345679999999999
Q ss_pred c-CCCCCeEEEEEeccccchhhhhhhhhccccccccCCCcEEEEcCCcceecCccccc----CCCeEEEEEEEec
Q 002138 888 G-GMGGGHYTAFVDIDYHSAFKQYEYLKTQITSVQLGHKRWFEFDDDRVYPVSEDNIK----TSAAYVLFYKRVS 957 (960)
Q Consensus 888 G-~l~gGHYtAy~k~~~~~~~~~~~~~~~~~~~~~~~~~~Wy~fdDs~Vs~vs~~~v~----s~~AYvLFY~R~~ 957 (960)
| +..+|||++-+.+ ..-+.|+.+||..|..+..++|+ +..||+|+|+|.+
T Consensus 366 gtsatvghYl~dv~~--------------------s~~~gw~rIDD~~i~~v~q~dv~~~t~~r~~yllyY~~~d 420 (420)
T KOG1871|consen 366 GTSATVGHYLEDVSR--------------------SVPSGWQRIDDALILFVAQEDVEKVTGSRTPYLLYYIEAD 420 (420)
T ss_pred ccccccCceEEeeee--------------------cccCceeEeccceeeeccHhhhccccCccchheeEeeecC
Confidence 9 8999999999988 67889999999999999999887 4579999999975
No 38
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=99.94 E-value=1.2e-26 Score=247.70 Aligned_cols=305 Identities=27% Similarity=0.431 Sum_probs=238.2
Q ss_pred ccccccccccccCCCccchHHHHHHHhcChHHHHHHHhccccccccCCCCCCchHHHHHHHHHHHHhcCCC--CCccChH
Q 002138 333 GVCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPG--GIPVAPR 410 (960)
Q Consensus 333 ~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~al~~L~~~l~~~~--~~~i~P~ 410 (960)
....+|.+||.|+-++=|.|++||+|++.+|+|+||+.. +|+....+.+...|+.+++++|.+. ...++|.
T Consensus 128 ~tYLpG~VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~-------~n~~d~~~~lv~rl~~l~rklw~~r~fk~hvSph 200 (442)
T KOG2026|consen 128 STYLPGFVGLNNIKANDYANAVLQALSHVVPLRNYFLLE-------ENYFDNLTELVQRLGELIRKLWNPRNFKGHVSPH 200 (442)
T ss_pred CcceeeeeccchhhhHHHHHHHHHHHhccchhhhhhccc-------ccccchhHHHHHHHHHHHHHhcChhhhcccCCHH
Confidence 457899999999999999999999999999999999742 2344445789999999999999976 4679999
Q ss_pred HHHHHHhhc-CCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCccccccc
Q 002138 411 MFKLKLANF-APQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQ 489 (960)
Q Consensus 411 ~f~~~l~~~-~~~F~~~~QQDA~EfL~~LLd~L~eel~~~~~kp~~e~~d~~~~~~~~~a~e~w~~~~~~n~SiI~~lF~ 489 (960)
+|..++... ...|..++|-|+-|||++||+.||.+|+..++ ..|||.+.|+
T Consensus 201 e~lqaV~~~s~k~f~i~~q~DpveFlswllntlhs~l~~~k~----------------------------~~SIi~~~fq 252 (442)
T KOG2026|consen 201 EFLQAVMKLSKKRFRIGQQSDPVEFLSWLLNTLHSDLRGSKK----------------------------ASSIIHKSFQ 252 (442)
T ss_pred HHHHHHHHHhhhheecCCCCCHHHHHHHHHHHHHHHhCCCCC----------------------------chhHhhHhhc
Confidence 999998554 35799999999999999999999999976552 2489999999
Q ss_pred eEEEEEEeeCC----CCCeeeeecCCeeEEecCCCCCccceEEEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhccc
Q 002138 490 GQYRSMLVCPV----CNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFL 565 (960)
Q Consensus 490 G~~~s~l~C~~----C~~~S~~~epf~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~ 565 (960)
|.++-..+-.. -....+..-||++|+|+||...-
T Consensus 253 G~~ri~k~~~~~~~~~~~~~i~~~~Fl~LtLDLP~~pl------------------------------------------ 290 (442)
T KOG2026|consen 253 GEVRIVKEKQGEASENENKEISVMPFLYLTLDLPPPPL------------------------------------------ 290 (442)
T ss_pred ceEEeeeeccccccccccceEEEEeeEEEEecCCCCCc------------------------------------------
Confidence 99877554433 23445677899999999996420
Q ss_pred CCccceeeeeeeccceeeecCCCccccccccCCCcEEEEEcCCCCCCCceEEeeeeccccccccccccccceeeccceEE
Q 002138 566 RNHEKLLVAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVG 645 (960)
Q Consensus 566 ~~~~~l~~~e~~~~~~~~~~~~~~~~~~~I~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~ 645 (960)
|.|-. +.
T Consensus 291 -------------------fkD~~----------------------------------e~-------------------- 297 (442)
T KOG2026|consen 291 -------------------FKDVM----------------------------------EK-------------------- 297 (442)
T ss_pred -------------------ccchh----------------------------------hh--------------------
Confidence 00000 00
Q ss_pred ecCCCCChhHHHHHHHHhcCCCcCCCCCCCCcccccccCCCCCCccccccccccCCCCCCCCCCcCCCCCCCCCCceEEE
Q 002138 646 RLSDLTNGSDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYR 725 (960)
Q Consensus 646 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (960)
T Consensus 298 -------------------------------------------------------------------------------- 297 (442)
T KOG2026|consen 298 -------------------------------------------------------------------------------- 297 (442)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCcccccCCCCCcCCCCCCeEEEEecChhhHHhhhhhhhhhhhhhcccccccCCCCCCCCHHHHHHHhhCccccCC
Q 002138 726 LDSIRPTEIKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGP 805 (960)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~dCL~~f~~~E~L~~ 805 (960)
..+ ..|.|.+.|+.|..+-.-+-
T Consensus 298 -------------------------------------------nii--------------PQV~l~~lL~Kf~g~t~~e~ 320 (442)
T KOG2026|consen 298 -------------------------------------------NII--------------PQVALFDLLKKFDGETVTEV 320 (442)
T ss_pred -------------------------------------------ccc--------------ccchHHHHHHHhcCceeeee
Confidence 000 23567777777764432110
Q ss_pred CCCCCCccccCcceeEEEEEeeeCCCeEEEEEEeeEecccccccCCeeeeccCCCCCCCCccccCC--CCCCccEEEEEE
Q 002138 806 EDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLSNYVCCKN--SQLSNRYVLYAI 883 (960)
Q Consensus 806 ~d~wyC~~Ck~~~~AtKk~~l~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~~~~--~~~~~~YdL~AV 883 (960)
.....| +++.+.++|++||+|+|||.-+.++.+|..|.|.||+..+|+.+...... ...-..|+|.|-
T Consensus 321 ---------~~~~~~-~rf~l~k~P~ylifh~~rF~kNn~f~ekNpTl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~N 390 (442)
T KOG2026|consen 321 ---------VTPKLA-MRFRLTKLPRYLIFHMKRFKKNNFFKEKNPTLVEFPYSEVDILHVLDRLKAVNHKVTQYSLVAN 390 (442)
T ss_pred ---------cchhhh-hheeeecCCceEEEEeeeccccCcccccCCceeeccCCccchhhhhhhcccccCccccccchhh
Confidence 011234 88999999999999999999999999999999999988888877654221 112367999998
Q ss_pred EEeecCCCCCeEEEEEeccccchhhhhhhhhccccccccCCCcEEEEcCCcceecCcccccCCCeEEEEEEEe
Q 002138 884 SNHYGGMGGGHYTAFVDIDYHSAFKQYEYLKTQITSVQLGHKRWFEFDDDRVYPVSEDNIKTSAAYVLFYKRV 956 (960)
Q Consensus 884 inH~G~l~gGHYtAy~k~~~~~~~~~~~~~~~~~~~~~~~~~~Wy~fdDs~Vs~vs~~~v~s~~AYvLFY~R~ 956 (960)
+.|- -..|||...+++ ...++||..+|-+|++..++-|.-+.+||-.|++.
T Consensus 391 ~i~~--~e~~~~riqi~~--------------------~~s~kW~eiqdl~v~e~~~qmi~L~Es~iQiwe~~ 441 (442)
T KOG2026|consen 391 AIHE--DEDGNFRIQIYD--------------------NSSEKWYEIQDLHVTERLPQMIFLKESFIQIWEKQ 441 (442)
T ss_pred hhcC--cccCceEEEEEe--------------------CCCcceEEecccchhhhhhHHHHHHHHHHHHHhcc
Confidence 8886 778999999999 68999999999999999999898889999888775
No 39
>PF06337 DUSP: DUSP domain; InterPro: IPR006615 Deubiquitinating enzymes (DUB) form a large family of cysteine protease that can deconjugate ubiquitin or ubiquitin-like proteins (see PDOC00271 from PROSITEDOC) from ubiquitin-conjugated proteins. All DUBs contain a catalytic domain surrounded by one or more subdomains, some of which contribute to target recognition. The ~120-residue DUSP (domain present in ubiquitin-specific proteases) domain is one of these specific subdomains. Single or tandem DUSP domains are located both N- and C-terminal to the ubiquitin carboxyl-terminal hydrolase catalytic core domain (see PDOC00750 from PROSITEDOC) []. The DUSP domain displays a tripod-like AB3 fold with a three-helix bundle and a three-stranded anti-parallel beta-sheet resembling the legs and seat of the tripod. Conserved residues are predominantly involved in hydrophobic packing interactions within the three alpha-helices. The most conserved DUSP residues, forming the PGPI motif, are flanked by two long loops that vary both in length and sequence. The PGPI motif packs against the three-helix bundle and is highly ordered []. The function of the DUSP domain is unknown but it may play a role in protein/protein interaction or substrate recognition. This domain is associated with ubiquitin carboxyl-terminal hydrolase family 2 (IPR001394 from INTERPRO, MEROPS peptidase family C19). They are a family 100 to 200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast; others include: Mammalian ubiquitin carboxyl-terminal hydrolase 4 (USP4), Mammalian ubiquitin carboxyl-terminal hydrolase 11 (USP11), Mammalian ubiquitin carboxyl-terminal hydrolase 15 (USP15), Mammalian ubiquitin carboxyl-terminal hydrolase 20 (USP20), Mammalian ubiquitin carboxyl-terminal hydrolase 32 (USP32), Vertebrate ubiquitin carboxyl-terminal hydrolase 33 (USP33), Vertebrate ubiquitin carboxyl-terminal hydrolase 48 (USP48). ; GO: 0004221 ubiquitin thiolesterase activity; PDB: 4A3O_B 3PPA_A 3LMN_A 1W6V_A 3T9L_A 4A3P_A 3PV1_A 3JYU_B.
Probab=99.73 E-value=4.1e-18 Score=157.71 Aligned_cols=81 Identities=21% Similarity=0.322 Sum_probs=55.5
Q ss_pred CCEEEEEcchhHHHHHHhhccccCCcc-----cCCCCCCCChhhhhhhhcccccCC-------CCCcccCCCccCCCeEE
Q 002138 94 RQKVYLVPYRWWKESQILLAEKVGGVL-----YEVLSNDDNTDLEILLHLKKKEGS-------VDSDCGEGGVSVREYAL 161 (960)
Q Consensus 94 ~~~~ylv~~~W~~~w~~~v~~~~~g~~-----~~~pg~IdNs~L~~~~~~~~~~~~-------~~~~l~~~l~e~~Dy~~ 161 (960)
||.||||+++||++|+.||........ ...||||||++|+. . .+. ....||++|.++.||++
T Consensus 1 G~~~ylIs~~W~~~W~~~v~~~~~~~~~~~~~~~~pGpIdN~~L~~--~----~~~~~~~~~~~~~~Lk~~l~~~~Dy~~ 74 (99)
T PF06337_consen 1 GDKWYLISSKWWRQWKSYVSYDNNDNESDPDSSPRPGPIDNSDLLD--E----DNSQLQFPPPENYRLKPNLQEGVDYEL 74 (99)
T ss_dssp T-EEEEEEHHHHHHHHHHHTTTTTSTTTTT-GGG---SB-GGGGEC--C----TTT---------TEE-SS--CTTTEEE
T ss_pred CCEEEEECHHHHHHHHHHhCCCCcccccccccCCCCCCEeCHHHhC--C----CCcccccchhhhhhccccccCCCCEEE
Confidence 799999999999999999998765222 23499999999992 1 111 12489999999999999
Q ss_pred cCHHHHHHHHHHcCCCCce
Q 002138 162 VPEGMWLRALKWHNDSKAA 180 (960)
Q Consensus 162 Vp~~~w~~l~~wYGg~p~i 180 (960)
||+++|++|.+||||||+|
T Consensus 75 v~~~~W~~l~~~Ygggp~I 93 (99)
T PF06337_consen 75 VPEEVWDYLHSWYGGGPEI 93 (99)
T ss_dssp EEHHHHHHHHHHH-T----
T ss_pred ECHHHHHHHHHHcCCCCcE
Confidence 9999999999999999998
No 40
>smart00695 DUSP Domain in ubiquitin-specific proteases.
Probab=99.67 E-value=1.4e-16 Score=143.40 Aligned_cols=77 Identities=19% Similarity=0.358 Sum_probs=66.8
Q ss_pred CCCCEEEEEcchhHHHHHHhhccccCCcccCCCCCCCChhhhhhhhcccccCCCCCcccCCCccCCCeEEcCHHHHHHHH
Q 002138 92 DDRQKVYLVPYRWWKESQILLAEKVGGVLYEVLSNDDNTDLEILLHLKKKEGSVDSDCGEGGVSVREYALVPEGMWLRAL 171 (960)
Q Consensus 92 ~~~~~~ylv~~~W~~~w~~~v~~~~~g~~~~~pg~IdNs~L~~~~~~~~~~~~~~~~l~~~l~e~~Dy~~Vp~~~w~~l~ 171 (960)
..|+.||+|+.+||++|+.|+... ....||||||++|+ . +.....|+.++.++.||++||+++|++|.
T Consensus 2 ~~g~~~yiIs~~W~~~~~~~~~~~----~~~~pGpIdN~~l~--~------~~~~~~lk~~l~~~~dy~~V~~~vW~~l~ 69 (86)
T smart00695 2 REGDTWYLISTRWYRQWADFVEGK----DGKDPGPIDNSGIL--C------SHGGPRLKEHLVEGEDYVLIPEELWNKLV 69 (86)
T ss_pred CCCCEEEEEeHHHHHHHHHHhCCC----CCCCCCCCCcHHhc--C------CCCCcccccccccCCCEEEeCHHHHHHHH
Confidence 469999999999999999999843 35779999999999 2 11235899999999999999999999999
Q ss_pred HHcCCCCc-e
Q 002138 172 KWHNDSKA-A 180 (960)
Q Consensus 172 ~wYGg~p~-i 180 (960)
+||||+|. |
T Consensus 70 ~~YGggp~~i 79 (86)
T smart00695 70 SWYGGGPGPI 79 (86)
T ss_pred HHHCCCCccc
Confidence 99999984 5
No 41
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=99.54 E-value=1.8e-14 Score=126.62 Aligned_cols=83 Identities=19% Similarity=0.220 Sum_probs=67.7
Q ss_pred EEEeeecC---CCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEe
Q 002138 200 IRLSVSQE---TNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (960)
Q Consensus 200 l~l~~~~~---~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (960)
|++|+..+ ++..+.+||+.+||+.+.+.+|++|+| .+++|||.+++.+.+++|.+.+.|++||+|..||.|++|++
T Consensus 2 ~kLC~~~~~~l~~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~r 80 (88)
T PF14836_consen 2 LKLCVPSNVDLQSVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEER 80 (88)
T ss_dssp EEEEETTE--CCEEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE-
T ss_pred ceeccCCCcccccHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEee
Confidence 67888766 568899999999999999999999999 77899999999999999999999999999999999999999
Q ss_pred -ecCcccC
Q 002138 277 -VHGFSDS 283 (960)
Q Consensus 277 -~~g~w~~ 283 (960)
.||+||+
T Consensus 81 n~DGtWPr 88 (88)
T PF14836_consen 81 NEDGTWPR 88 (88)
T ss_dssp -TTS--TT
T ss_pred ccCCCCCC
Confidence 5999995
No 42
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.36 E-value=3e-12 Score=150.03 Aligned_cols=132 Identities=19% Similarity=0.289 Sum_probs=99.2
Q ss_pred CCCccccCcceeEEEEEeeeCCCeEEEEEEeeEec--cccc--ccCCeeeeccCCCCCCCCcc----------ccC----
Q 002138 809 WYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFS--RYFK--SKLDTYVDFPIDDLDLSNYV----------CCK---- 870 (960)
Q Consensus 809 wyC~~Ck~~~~AtKk~~l~~lP~iLiIhLKRF~~~--~~~~--~Ki~~~V~FPi~~LDls~~v----------~~~---- 870 (960)
-.|+.|++++..+.+..+-.||++|.|...-+... .+++ .|.-..|.+| +.+-|..-= ...
T Consensus 702 ~~C~~C~k~ep~~q~~~vr~LPd~L~in~~~~~~~~~~~~a~q~~~~~~vWLP-~~~~~~~~k~~~~~v~~~s~~~~~~~ 780 (1118)
T KOG1275|consen 702 AWCETCTKPEPTSQKKNVRSLPDCLSINTCLNVHELVDFWARQNKLLEDVWLP-EWFHMIISKNKAQLVSTISDLDVSPL 780 (1118)
T ss_pred cccccccCCCCcccccccccCcceeeeeeeccchhhhhhHHHhhccccccccc-hheeEEEecccceeeeeeccccCCCC
Confidence 47999999999999999999999999998887654 3333 3566778888 466553210 000
Q ss_pred ---CCCCCccEEEEEEEEeec-CCCCCeEEEEEeccccchhhhhhhhhccccccccCCCcEEEEcCCcceecCcccccC-
Q 002138 871 ---NSQLSNRYVLYAISNHYG-GMGGGHYTAFVDIDYHSAFKQYEYLKTQITSVQLGHKRWFEFDDDRVYPVSEDNIKT- 945 (960)
Q Consensus 871 ---~~~~~~~YdL~AVinH~G-~l~gGHYtAy~k~~~~~~~~~~~~~~~~~~~~~~~~~~Wy~fdDs~Vs~vs~~~v~s- 945 (960)
+.+.-.+|+|-|+|.|.| +-..+|.++++|... .++. -...+.+||.|||--|+++++++.+.
T Consensus 781 ~~~d~~~~~vYeL~a~V~~I~d~~~e~~lVs~Ikv~~-----~~~~-------~~~~dsqWylFNDfLV~~ite~EAl~~ 848 (1118)
T KOG1275|consen 781 PDYDEPSAVVYELDAMVHAIGDNENEVNLVSPIKVLR-----PYHV-------IKPDDSQWYLFNDFLVSEITEEEALHF 848 (1118)
T ss_pred ccccCCceEEEEeeeEEEEeccCCCccceEEEEEccC-----cccc-------cCcCcceeEEEcceeeeeCChHHheEe
Confidence 011337899999999999 779999999999711 1111 11346899999999999999988873
Q ss_pred ----CCeEEEEE
Q 002138 946 ----SAAYVLFY 953 (960)
Q Consensus 946 ----~~AYvLFY 953 (960)
+-+-||||
T Consensus 849 ~~~WKvP~Il~Y 860 (1118)
T KOG1275|consen 849 DGPWKVPAILYY 860 (1118)
T ss_pred ccCccCcEEEEE
Confidence 67889999
No 43
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=98.08 E-value=1.8e-05 Score=83.60 Aligned_cols=143 Identities=24% Similarity=0.328 Sum_probs=90.6
Q ss_pred CCeeEEecCCCC---CccceEEEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhcccCCc--cceeeeeeeccceeee
Q 002138 510 PLMYLSLPIPST---TMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNH--EKLLVAEIYRSKIFRV 584 (960)
Q Consensus 510 pf~~LsL~iP~~---~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~--~~l~~~e~~~~~~~~~ 584 (960)
++.+--|+||.. +.+.+.|+++..... .-..+.+.|||.+++.||++++.+..+++.. .++.+.++++++|++.
T Consensus 2 ~l~YevL~i~l~ElE~kk~~kv~w~~~~~~-~~~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~ 80 (213)
T PF14533_consen 2 TLYYEVLDIPLKELENKKQFKVTWLNDGLK-EEQEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKI 80 (213)
T ss_dssp EEEEEE-SS-HHHHHSB--EEEEEE-TTS--EE-EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEE
T ss_pred ceEEEecCCCHHHHhCceEEEEEEECCCCc-ceeEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEee
Confidence 345556677754 567788888854332 2246889999999999999999999998653 5899999999999999
Q ss_pred cCCCccccccccCCCcEEEEEcCCCCC-------CCceEEeeeeccccccccccccccceeeccceEEecCCCCChhHHH
Q 002138 585 LDEPSDLLGLIRDEDKLVAYRLPKDSE-------TPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNGSDIR 657 (960)
Q Consensus 585 ~~~~~~~~~~I~~~d~i~~ye~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~l~ 657 (960)
|. ++..+..|.+...+.+-++|.... ...++++.|.-.+. ...||+||++.+...-+-.++.
T Consensus 81 ~~-~d~~i~~l~~~~~~r~E~ip~ee~~~~~~~~~~~li~V~hf~k~~----------~~~hGiPF~f~v~~gE~f~~tK 149 (213)
T PF14533_consen 81 LS-EDEPISSLNDYITLRIEEIPEEELNLDDESEGEKLIPVFHFHKDP----------SRTHGIPFLFVVKPGETFSDTK 149 (213)
T ss_dssp E--TTSBGGGS--TTEEEEEE--GGGSS--TT--TEEEEEEEEESSST----------T-EEEEEEEEEEETT--HHHHH
T ss_pred cC-CCCchhhccCcceeeeecCChHHhhcccccccceEEEEEEEecCc----------cccCCCCEEEEeeCCCcHHHHH
Confidence 99 788888886666677888886431 23567788764332 2789999999997777777777
Q ss_pred HHHHHhc
Q 002138 658 KLFLKLL 664 (960)
Q Consensus 658 ~~~~~~l 664 (960)
+.+.+++
T Consensus 150 ~Rl~~rl 156 (213)
T PF14533_consen 150 ERLQKRL 156 (213)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7777765
No 44
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.0021 Score=77.16 Aligned_cols=104 Identities=19% Similarity=0.232 Sum_probs=58.2
Q ss_pred cccCCCccchHHHHHHHhcChHHHHHHHhccc---c-------ccccCCCCCCchHHHHHHHHHHHHhcCCCCCcc--Ch
Q 002138 342 LRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQ---K-------EINYENPLGLNGELALAFGDLLRKLWAPGGIPV--AP 409 (960)
Q Consensus 342 L~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~---~-------~~~~~n~~~~~~~l~~al~~L~~~l~~~~~~~i--~P 409 (960)
|.|.|||||.||+||||..+|+|+.-+...+. . ..+.............+....+... ......+ +-
T Consensus 34 l~n~gn~cy~ns~~Q~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~ 112 (587)
T KOG1864|consen 34 LVNTGNSCYYNSTLQALSSCPPFVSRVEQLPRLVRPKIEALKDSLNRKKTRIFDEKSLEAVTLNFSKN-SSSNESFNLSV 112 (587)
T ss_pred EeecCCchhhhhHHHHHhhccHHHHHHHHHHHhcccccccCchhhccccccchhHHHHHHHHHhhhcc-CCccccccchH
Confidence 99999999999999999999999977664221 1 1111111111111222222222222 1111122 22
Q ss_pred HHHHHHH---hhcCCCCCCCCCCCHHHHHHHHHHHHHHHh
Q 002138 410 RMFKLKL---ANFAPQFSGYNQHDSQEFLAFLLDGLHEDL 446 (960)
Q Consensus 410 ~~f~~~l---~~~~~~F~~~~QQDA~EfL~~LLd~L~eel 446 (960)
..+...+ .+....|....|+|||+++.-|+-.+.+-+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~~~~~ 152 (587)
T KOG1864|consen 113 TQLVQSRLNNGKKYAEFNNNDQRDAHNFLLELMAMVDDVM 152 (587)
T ss_pred HHHHHHHhhhhhhhhhhhcccHhhhhhhhhhhhHHHhhhc
Confidence 2222222 334456778899999999998887776543
No 45
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=96.69 E-value=0.0052 Score=53.12 Aligned_cols=62 Identities=8% Similarity=-0.024 Sum_probs=53.5
Q ss_pred CCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEE
Q 002138 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFL 273 (960)
Q Consensus 207 ~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Ill 273 (960)
.+....+.++..+||.+|+.++...+++|.+++|||. ....|.|...+++++++..|..|+|
T Consensus 8 ~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~-----~Gk~L~D~~~~L~~~gi~~~~~l~l 69 (71)
T cd01796 8 SETTFSLDVDPDLELENFKALCEAESGIPASQQQLIY-----NGRELVDNKRLLALYGVKDGDLVVL 69 (71)
T ss_pred CCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEE-----CCeEccCCcccHHHcCCCCCCEEEE
Confidence 4667889999999999999999999999999999994 2345777657899999999998887
No 46
>PTZ00044 ubiquitin; Provisional
Probab=96.34 E-value=0.017 Score=50.44 Aligned_cols=66 Identities=12% Similarity=0.105 Sum_probs=56.0
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEee
Q 002138 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQV 277 (960)
Q Consensus 206 ~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~ 277 (960)
.++...++.++..+||.+|+.++.+..++|++++||| +. ...|.|. .+|.+.++..+..|.+-++.
T Consensus 8 ~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~-~~----g~~L~d~-~~l~~~~i~~~~~i~l~~~~ 73 (76)
T PTZ00044 8 LTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLI-YS----GKQMSDD-LKLSDYKVVPGSTIHMVLQL 73 (76)
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEE-EC----CEEccCC-CcHHHcCCCCCCEEEEEEEc
Confidence 4567888999999999999999999999999999999 53 3346654 78999999999999887663
No 47
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=96.26 E-value=0.018 Score=50.20 Aligned_cols=65 Identities=15% Similarity=0.171 Sum_probs=54.7
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEe
Q 002138 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (960)
Q Consensus 206 ~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (960)
.++...++.++..+|+++|+++++..++++++++||+ +. ...|.|. .+|.+++++.+..|.+-++
T Consensus 8 ~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~-~~----G~~L~d~-~~L~~~~i~~~~~l~l~~~ 72 (74)
T cd01807 8 LQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLL-FK----GKALADD-KRLSDYSIGPNAKLNLVVR 72 (74)
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEE-EC----CEECCCC-CCHHHCCCCCCCEEEEEEc
Confidence 3566788999999999999999999999999999998 42 3457664 8999999999999887443
No 48
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=96.18 E-value=0.033 Score=50.12 Aligned_cols=66 Identities=9% Similarity=0.008 Sum_probs=54.1
Q ss_pred CeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEe--cCCccccccccccccccccccCCCCEEEEE
Q 002138 209 NSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDF--SGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (960)
Q Consensus 209 ~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~--~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (960)
......|++..|+.+|+.++-.++|++++.+||-.+ .+......+.+..++|...++..|..|.+.
T Consensus 14 ~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 14 RSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp SEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred eeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 478899999999999999999999999999998876 233444556777899999999999888874
No 49
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=96.12 E-value=0.017 Score=50.34 Aligned_cols=64 Identities=16% Similarity=0.109 Sum_probs=52.7
Q ss_pred CCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEE
Q 002138 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFL 273 (960)
Q Consensus 207 ~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Ill 273 (960)
.+..+++.++..+|+.+|++++.+++++|+++++|.... -....+.| +.+|.++++..|+.|++
T Consensus 8 ~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~--~~Gk~l~D-~~~L~~~~i~~g~~i~l 71 (74)
T cd01813 8 GGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLK--VKGKPAED-DVKISALKLKPNTKIMM 71 (74)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeec--ccCCcCCC-CcCHHHcCCCCCCEEEE
Confidence 456678999999999999999999999999999999520 02235666 48999999999998887
No 50
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=96.08 E-value=0.019 Score=49.32 Aligned_cols=62 Identities=21% Similarity=0.036 Sum_probs=51.9
Q ss_pred CCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEE
Q 002138 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (960)
Q Consensus 207 ~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (960)
.+....+.++..+|+.+|+.++.+.++++++++||+. .+ ..|.+ +.+|.++++..|..|.+.
T Consensus 8 ~g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~-~g----~~l~d-~~~L~~~~i~~g~~l~v~ 69 (71)
T cd01812 8 GGESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIF-KG----KERDD-AETLDMSGVKDGSKVMLL 69 (71)
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEee-CC----cccCc-cCcHHHcCCCCCCEEEEe
Confidence 3566788999999999999999999999999999994 22 34555 479999999999988874
No 51
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=95.94 E-value=0.024 Score=49.57 Aligned_cols=60 Identities=12% Similarity=0.106 Sum_probs=49.3
Q ss_pred CCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccC-CCCEEEE
Q 002138 208 TNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAK-PGEEVFL 273 (960)
Q Consensus 208 ~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~-~~q~Ill 273 (960)
+...++.++..+||.+||.++...+++|++.+|| +.++ .|.+.+.+|.+.++. .|.++.|
T Consensus 12 ~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL--~~G~----~L~dD~~tL~~ygi~~~g~~~~l 72 (75)
T cd01799 12 TVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW--VIGQ----RLARDQETLYSHGIRTNGDSAFL 72 (75)
T ss_pred CCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE--EcCC----eeCCCcCCHHHcCCCCCCCEEEE
Confidence 4567899999999999999999999999999999 4332 255455899999998 6677766
No 52
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=95.78 E-value=0.022 Score=51.44 Aligned_cols=61 Identities=11% Similarity=0.108 Sum_probs=54.2
Q ss_pred eEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEE
Q 002138 210 SLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQL 275 (960)
Q Consensus 210 ~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~ 275 (960)
..++.++..+|+++|+..+...|++++++++||.. +. .|.|...||.+.++.++..|+|-+
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~d-G~----~L~DDsrTLssyGv~sgSvl~Lli 76 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSID-GK----ILSDDCATLGTLGVIPESVILLKA 76 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeec-Cc----eeccCCccHHhcCCCCCCEEEEEe
Confidence 56788999999999999999999999999999954 33 688888999999999999999854
No 53
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=95.74 E-value=0.047 Score=47.54 Aligned_cols=66 Identities=18% Similarity=0.315 Sum_probs=56.0
Q ss_pred ecCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEe
Q 002138 205 SQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (960)
Q Consensus 205 ~~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (960)
..++...++.++..+||.+|++++....++|.+++||+ + ....|.|. .+|.+.+++.+..+.+-.+
T Consensus 5 ~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~-~----~G~~L~D~-~tL~~~~i~~~~tl~l~~~ 70 (74)
T cd01810 5 NDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLS-F----EGRPMEDE-HPLGEYGLKPGCTVFMNLR 70 (74)
T ss_pred CCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEE-E----CCEECCCC-CCHHHcCCCCCCEEEEEEE
Confidence 34567788999999999999999999999999999998 3 33457665 7999999999999988665
No 54
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=95.73 E-value=0.053 Score=47.12 Aligned_cols=65 Identities=17% Similarity=0.142 Sum_probs=54.7
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEe
Q 002138 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (960)
Q Consensus 206 ~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (960)
.++....+.++..+|+.+|++++.+..++|++++||+ +. ...|.| +.+|.+.++..|..|-+-.+
T Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~-~~----g~~L~d-~~tl~~~~i~~g~~i~l~~~ 72 (76)
T cd01806 8 LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI-YS----GKQMND-DKTAADYKLEGGSVLHLVLA 72 (76)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEE-EC----CeEccC-CCCHHHcCCCCCCEEEEEEE
Confidence 3466778999999999999999999999999999999 53 234655 47999999999999888665
No 55
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=95.65 E-value=0.052 Score=46.29 Aligned_cols=64 Identities=14% Similarity=0.186 Sum_probs=53.7
Q ss_pred CCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEe
Q 002138 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (960)
Q Consensus 207 ~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (960)
++..+.+.++..+||.+|++++.+.+++|+++++|.. ....|.| +.+|.+.++..|..|.+-++
T Consensus 4 ~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~-----~G~~L~d-~~tL~~~~i~~~~~I~l~~k 67 (69)
T PF00240_consen 4 SGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIY-----NGKELDD-DKTLSDYGIKDGSTIHLVIK 67 (69)
T ss_dssp TSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEE-----TTEEEST-TSBTGGGTTSTTEEEEEEES
T ss_pred CCcEEEEEECCCCCHHHhhhhcccccccccccceeee-----eeecccC-cCcHHHcCCCCCCEEEEEEe
Confidence 4557889999999999999999999999999999983 3345655 58999999999998887443
No 56
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=95.63 E-value=0.053 Score=47.10 Aligned_cols=66 Identities=9% Similarity=0.123 Sum_probs=55.3
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEee
Q 002138 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQV 277 (960)
Q Consensus 206 ~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~ 277 (960)
.++....+.++..+|+.+|++++.+.+++|++++||| +. ...|.|. .+|.+.++..|..|.+-++.
T Consensus 8 ~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~-~~----g~~L~d~-~~L~~~~i~~~~~i~l~~~~ 73 (76)
T cd01803 8 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FA----GKQLEDG-RTLSDYNIQKESTLHLVLRL 73 (76)
T ss_pred CCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEE-EC----CEECCCC-CcHHHcCCCCCCEEEEEEEc
Confidence 4466778999999999999999999999999999999 43 2346664 68999999999998887663
No 57
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=95.62 E-value=0.0093 Score=62.95 Aligned_cols=81 Identities=16% Similarity=0.322 Sum_probs=58.3
Q ss_pred CCccccCcceeEEEEEeeeCCCeEEEEEEeeEecccccccCCeeeeccCCCCCCCCccccCCCCCCccEEEEEEEEeecC
Q 002138 810 YCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYGG 889 (960)
Q Consensus 810 yC~~Ck~~~~AtKk~~l~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~AVinH~G~ 889 (960)
-|.+|+.+. ..++|-+.++|+|+++|+- .+-..+.-..-+|-+ +...|..-+||--.-.
T Consensus 172 pCn~C~~ks-Q~rkMvlekv~~vfmLHFV-----eGLP~ndl~~ysF~f---------------eg~~Y~Vt~VIQY~~~ 230 (275)
T PF15499_consen 172 PCNSCNSKS-QRRKMVLEKVPPVFMLHFV-----EGLPHNDLQHYSFHF---------------EGCLYQVTSVIQYQAN 230 (275)
T ss_pred CCcccCChH-HhHhhhhhcCchhhhhhhh-----ccCCccCCCccceee---------------cCeeEEEEEEEEEecc
Confidence 599998764 4678999999999999942 222222111222222 4578999999976554
Q ss_pred CCCCeEEEEEeccccchhhhhhhhhccccccccCCCcEEEEcCCc
Q 002138 890 MGGGHYTAFVDIDYHSAFKQYEYLKTQITSVQLGHKRWFEFDDDR 934 (960)
Q Consensus 890 l~gGHYtAy~k~~~~~~~~~~~~~~~~~~~~~~~~~~Wy~fdDs~ 934 (960)
.-|+++++++ .+|.|..+||-+
T Consensus 231 --~~HFvtWi~~---------------------~dGsWLecDDLk 252 (275)
T PF15499_consen 231 --LNHFVTWIRD---------------------SDGSWLECDDLK 252 (275)
T ss_pred --CceeEEEEEc---------------------CCCCeEeeccCC
Confidence 5799999999 688899999975
No 58
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=95.57 E-value=0.04 Score=47.51 Aligned_cols=62 Identities=15% Similarity=0.050 Sum_probs=52.2
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEE
Q 002138 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFL 273 (960)
Q Consensus 206 ~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Ill 273 (960)
..+...++.++..+||.+|+.++....++|++++||| | ....|+|. .++.++++..+..|-+
T Consensus 6 ~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li-~----~G~~L~D~-~~l~~~~i~~~~tv~~ 67 (70)
T cd01794 6 STGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWF-F----SGKLLTDK-TRLQETKIQKDYVVQV 67 (70)
T ss_pred CCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEE-E----CCeECCCC-CCHHHcCCCCCCEEEE
Confidence 3467788999999999999999999999999999999 4 33457774 7999999998877765
No 59
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=95.40 E-value=0.062 Score=46.17 Aligned_cols=62 Identities=8% Similarity=0.052 Sum_probs=52.6
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEE
Q 002138 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFL 273 (960)
Q Consensus 206 ~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Ill 273 (960)
.++...++.+...+||++|++++.+..++|.+++||+ + ....|.|. .++.++++..|..+-+
T Consensus 6 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li-~----~G~~L~d~-~~l~~~~i~~~stl~l 67 (70)
T cd01798 6 NTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVI-F----AGKELRNT-TTIQECDLGQQSILHA 67 (70)
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEE-E----CCeECCCC-CcHHHcCCCCCCEEEE
Confidence 3566788999999999999999999999999999998 4 23457664 8999999999988866
No 60
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=95.23 E-value=0.062 Score=47.06 Aligned_cols=64 Identities=16% Similarity=0.139 Sum_probs=54.4
Q ss_pred CCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEee
Q 002138 208 TNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQV 277 (960)
Q Consensus 208 ~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~ 277 (960)
+..+++.++..+||.+|+.++....++|++.++|+ +.+ ..|+|. .+|.+.++..|..|.+-++.
T Consensus 7 g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~-~~G----~~L~d~-~tL~~~~i~~g~~l~v~~~~ 70 (76)
T cd01800 7 GQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQ-YEG----IFIKDS-NSLAYYNLANGTIIHLQLKE 70 (76)
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEE-ECC----EEcCCC-CcHHHcCCCCCCEEEEEEec
Confidence 45678999999999999999999999999999999 433 357664 79999999999999886663
No 61
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=95.18 E-value=0.077 Score=45.54 Aligned_cols=62 Identities=13% Similarity=0.135 Sum_probs=52.7
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEE
Q 002138 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFL 273 (960)
Q Consensus 206 ~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Ill 273 (960)
.++...++.++..+|+.+|++++.+.++++++.+||+. . ...|.| +.+|.+.++..|..+.+
T Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~-~----g~~L~d-~~~L~~~~i~~~~~l~l 69 (72)
T cd01809 8 LDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIY-S----GRVLKD-DETLSEYKVEDGHTIHL 69 (72)
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE-C----CEECCC-cCcHHHCCCCCCCEEEE
Confidence 44667889999999999999999999999999999994 2 345666 47999999999988766
No 62
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=95.13 E-value=0.072 Score=46.36 Aligned_cols=62 Identities=8% Similarity=-0.030 Sum_probs=52.9
Q ss_pred CeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEe
Q 002138 209 NSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (960)
Q Consensus 209 ~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (960)
...++.+...+||.+|+.++....++|++++|||. ....|.|. .+|.+++++.+..+-+-++
T Consensus 9 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~-----~Gk~L~D~-~tL~~~~i~~~~tl~l~~~ 70 (74)
T cd01793 9 NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLL-----AGVPLEDD-ATLGQCGVEELCTLEVAGR 70 (74)
T ss_pred CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEE-----CCeECCCC-CCHHHcCCCCCCEEEEEEe
Confidence 46788999999999999999999999999999993 23457775 8999999999988877555
No 63
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=95.11 E-value=0.11 Score=45.43 Aligned_cols=64 Identities=9% Similarity=0.145 Sum_probs=53.6
Q ss_pred CCCeEEEEEccCCcHHHHHHHHHHHcCC--CCCceEEEEecCCccccccccccccccccccCCCCEEEEEEe
Q 002138 207 ETNSLLVKISLEDNKVDLYKRACNLFIS--VSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (960)
Q Consensus 207 ~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i--~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (960)
.+...++.++..+|+.+|++++.+..++ +++++||+. ....|.|. .+|.++++..|..|.+-+.
T Consensus 9 ~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~-----~G~~L~d~-~~L~~~~i~~~~~i~~~~~ 74 (77)
T cd01805 9 KQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIY-----SGKILKDD-TTLEEYKIDEKDFVVVMVS 74 (77)
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEE-----CCEEccCC-CCHHHcCCCCCCEEEEEEe
Confidence 4567889999999999999999999999 899999983 24467664 7999999999998887544
No 64
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=95.03 E-value=0.14 Score=47.65 Aligned_cols=65 Identities=11% Similarity=0.119 Sum_probs=55.6
Q ss_pred CCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEee
Q 002138 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQV 277 (960)
Q Consensus 207 ~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~ 277 (960)
.+...++.++..+||.+|++++.+..+++.+++||| + ....|.|. .+|.+.++..+..|-+-++.
T Consensus 36 ~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi-~----~Gk~L~D~-~tL~dy~I~~~stL~l~~~l 100 (103)
T cd01802 36 TGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLI-W----NNMELEDE-YCLNDYNISEGCTLKLVLAM 100 (103)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEE-E----CCEECCCC-CcHHHcCCCCCCEEEEEEec
Confidence 466788999999999999999999999999999999 3 23457675 79999999999998887664
No 65
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=95.00 E-value=0.12 Score=45.63 Aligned_cols=69 Identities=13% Similarity=0.178 Sum_probs=53.8
Q ss_pred eEEEEeeecCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEE
Q 002138 198 LQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (960)
Q Consensus 198 l~l~l~~~~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (960)
..|.+. ...+...++.++..+|+.+|++++.+.++++.+++||- +. ...|.|. +|.++++..|..|.+=
T Consensus 2 m~I~Vk-~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~-~~----Gk~L~d~--~L~~~gi~~~~~i~l~ 70 (78)
T cd01804 2 MNLNIH-STTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALL-HR----ETRLSSG--KLQDLGLGDGSKLTLV 70 (78)
T ss_pred eEEEEE-ECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEE-EC----CcCCCCC--cHHHcCCCCCCEEEEE
Confidence 344442 23356688999999999999999999999999999886 32 3457664 7999999999988873
No 66
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=94.89 E-value=0.1 Score=46.02 Aligned_cols=61 Identities=16% Similarity=0.112 Sum_probs=51.2
Q ss_pred EEE-EEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEee
Q 002138 211 LLV-KISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQV 277 (960)
Q Consensus 211 ~~~-~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~ 277 (960)
.++ .+...+||.+|++++.+..+++.+++|||. ....|.|. .+|.+.++..+..|.+-++.
T Consensus 14 ~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~-----~Gk~L~D~-~tL~~y~i~~~~~i~l~~~~ 75 (78)
T cd01797 14 RTVDSLSRLTKVEELREKIQELFNVEPECQRLFY-----RGKQMEDG-HTLFDYNVGLNDIIQLLVRQ 75 (78)
T ss_pred EEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEe-----CCEECCCC-CCHHHcCCCCCCEEEEEEec
Confidence 456 367899999999999999999999999993 33457774 79999999999999987764
No 67
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=94.72 E-value=0.22 Score=44.53 Aligned_cols=67 Identities=13% Similarity=0.107 Sum_probs=54.7
Q ss_pred CCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccc-cccccccccccccccCCCCEEEEE
Q 002138 208 TNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQ-FLMNDRVTMSDDFSAKPGEEVFLQ 274 (960)
Q Consensus 208 ~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~-~lL~d~~~tL~d~~l~~~q~IllE 274 (960)
.-.....|++..|+.+|++++-..+++++..+||..+.+.... +.|.+.+++|...++..|..|.+.
T Consensus 12 ~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVv 79 (84)
T cd01789 12 SFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVI 79 (84)
T ss_pred ceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEE
Confidence 3345678999999999999999999999999999766655322 346666789999999999999884
No 68
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=94.65 E-value=0.12 Score=45.82 Aligned_cols=67 Identities=15% Similarity=0.109 Sum_probs=53.5
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEe
Q 002138 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (960)
Q Consensus 206 ~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (960)
.++...++.+...+||.+|++++.+.++++.+++||-..+ ....|+|. .+|.+.++..|..|.+-++
T Consensus 10 ~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~---~G~~L~D~-~tL~~~gi~~gs~l~l~~~ 76 (80)
T cd01792 10 LGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLD---SREVLQDG-VPLVSQGLGPGSTVLLVVQ 76 (80)
T ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEecc---CCCCCCCC-CCHHHcCCCCCCEEEEEEE
Confidence 3456778889999999999999999999999999993222 22357664 6899999999999887554
No 69
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=94.39 E-value=0.16 Score=43.69 Aligned_cols=58 Identities=17% Similarity=0.168 Sum_probs=48.6
Q ss_pred EEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEE
Q 002138 211 LLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (960)
Q Consensus 211 ~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (960)
.++.+...+|+.+|++++.+..+++.+++||+. . ...|.|. .+|.++++..|..|.+-
T Consensus 12 ~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~-~----Gk~L~d~-~tL~~~~i~~~stl~l~ 69 (71)
T cd01808 12 EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIF-A----GKILKDT-DTLTQHNIKDGLTVHLV 69 (71)
T ss_pred EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEE-C----CeEcCCC-CcHHHcCCCCCCEEEEE
Confidence 478999999999999999999999999999983 2 3356664 68999999999888663
No 70
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=94.28 E-value=0.23 Score=43.19 Aligned_cols=61 Identities=18% Similarity=0.098 Sum_probs=51.8
Q ss_pred CCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEE
Q 002138 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFL 273 (960)
Q Consensus 207 ~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Ill 273 (960)
.+....+.++..+||++|++++-+.++++++++||- +. ...|.|. .+|.+.++..|..|.+
T Consensus 10 ~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi-~~----Gk~L~D~-~tL~~ygi~~~stv~l 70 (73)
T cd01791 10 LGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLK-KW----YTIFKDH-ISLGDYEIHDGMNLEL 70 (73)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEE-eC----CcCCCCC-CCHHHcCCCCCCEEEE
Confidence 356778899999999999999999999999999996 33 3467764 7999999999988876
No 71
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=94.23 E-value=0.33 Score=43.71 Aligned_cols=65 Identities=18% Similarity=0.203 Sum_probs=54.6
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEe
Q 002138 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (960)
Q Consensus 206 ~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (960)
.++..+++.+.+.+++..|++..|+..+++.+++|++. . ...|.+ +.|+.++++..|..|-+-++
T Consensus 19 ~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f-~----G~~L~~-~~T~~~l~m~d~d~I~v~l~ 83 (87)
T cd01763 19 QDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLF-D----GQRIRD-NQTPDDLGMEDGDEIEVMLE 83 (87)
T ss_pred CCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEE-C----CeECCC-CCCHHHcCCCCCCEEEEEEe
Confidence 34778899999999999999999999999999999994 2 344655 47999999999998877554
No 72
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=93.42 E-value=0.25 Score=43.81 Aligned_cols=64 Identities=9% Similarity=0.116 Sum_probs=39.3
Q ss_pred CCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCcccccc-ccccccccccccCCCCEEEE
Q 002138 208 TNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLM-NDRVTMSDDFSAKPGEEVFL 273 (960)
Q Consensus 208 ~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL-~d~~~tL~d~~l~~~q~Ill 273 (960)
+-...+.++..+|+.+|++++.+.++++.+.+.|.. +.+....+ .+.+++|.+++|+.|..|.|
T Consensus 13 dG~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~--~~~~~~~l~s~~~~tl~~lglkHGdmlyL 77 (80)
T PF11543_consen 13 DGMKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSK--DRNNKEELKSSDSKTLSSLGLKHGDMLYL 77 (80)
T ss_dssp SEEEEEEE-TTSBHHHHHHHHHHHS---TTT---BS--SGGGGGCSSS-TT-CCCCT---TT-EEE-
T ss_pred CCCEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEe--cCCCCcccccCCcCCHHHcCCCCccEEEE
Confidence 345678899999999999999999999988877763 33333444 45679999999999999987
No 73
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=92.99 E-value=0.4 Score=40.40 Aligned_cols=61 Identities=15% Similarity=0.201 Sum_probs=49.7
Q ss_pred CCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEE
Q 002138 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFL 273 (960)
Q Consensus 207 ~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Ill 273 (960)
++....+.+...+|+++|++++.+.++++.+.++|+. .+ ..|++ +.+|.++++..+..|.+
T Consensus 6 ~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~-~g----~~l~d-~~~l~~~~v~~~~~i~v 66 (69)
T cd01769 6 TGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIY-AG----KILKD-DKTLSDYGIQDGSTLHL 66 (69)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEE-CC----cCCCC-cCCHHHCCCCCCCEEEE
Confidence 3566778889999999999999999999999999963 22 34655 47899999998888776
No 74
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=92.87 E-value=0.67 Score=40.99 Aligned_cols=67 Identities=13% Similarity=0.144 Sum_probs=53.1
Q ss_pred ecCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCc-eEEEEecCCccccccccc-cccccccccCCCCEEEEE
Q 002138 205 SQETNSLLVKISLEDNKVDLYKRACNLFISVSEM-LYIWDFSGQTTQFLMNDR-VTMSDDFSAKPGEEVFLQ 274 (960)
Q Consensus 205 ~~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~-~RLW~~~~~~~~~lL~d~-~~tL~d~~l~~~q~IllE 274 (960)
.+|+..+...|.+.+|+.+|+..+......+... ++|..-+-+ ..+.+. ++||.++++..+..++||
T Consensus 13 lpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr---~~l~~~~~~tl~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 13 LPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPR---RELTDEDSKTLEEAGLLPSATLIVE 81 (82)
T ss_dssp ETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSST---EECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred CCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCC---cCCCccccccHHHhcCCCCeEEEEE
Confidence 4888899999999999999999998887776654 888754432 223333 489999999999999986
No 75
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=92.32 E-value=0.39 Score=39.81 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=44.6
Q ss_pred CeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCC
Q 002138 209 NSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPG 268 (960)
Q Consensus 209 ~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~ 268 (960)
....+.++..+|+.+|+.++...++++++++||+. .+ ..|.+ +.+|.++++..|
T Consensus 10 ~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~-~g----~~L~d-~~tL~~~~i~~~ 63 (64)
T smart00213 10 GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIY-KG----KVLED-DRTLADYNIQDG 63 (64)
T ss_pred ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE-CC----EECCC-CCCHHHcCCcCC
Confidence 46788999999999999999999999999999984 22 34666 479999988765
No 76
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=91.12 E-value=0.89 Score=39.05 Aligned_cols=62 Identities=11% Similarity=0.149 Sum_probs=49.5
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHHHcCCCC-CceEEEEecCCccccccccccccccccccCCCCEEEE
Q 002138 206 QETNSLLVKISLEDNKVDLYKRACNLFISVS-EMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFL 273 (960)
Q Consensus 206 ~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~-e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Ill 273 (960)
.++....+.+.+..++..|.+..|+..+++. +.++++. . ...|+. ++|+.++++..|..|=+
T Consensus 8 ~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~f-d----G~~L~~-~~T~~~~~ied~d~Idv 70 (72)
T PF11976_consen 8 QDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIF-D----GKRLDP-NDTPEDLGIEDGDTIDV 70 (72)
T ss_dssp TTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEE-T----TEEE-T-TSCHHHHT-STTEEEEE
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEE-C----CEEcCC-CCCHHHCCCCCCCEEEE
Confidence 4566888999999999999999999999999 8999993 2 344654 47999999998887543
No 77
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=90.53 E-value=1.3 Score=39.11 Aligned_cols=67 Identities=9% Similarity=0.089 Sum_probs=51.7
Q ss_pred ecCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccc--cccccccccccCCCCEEEEE
Q 002138 205 SQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMN--DRVTMSDDFSAKPGEEVFLQ 274 (960)
Q Consensus 205 ~~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~--d~~~tL~d~~l~~~q~IllE 274 (960)
.+|+..+...|+..+|+.+|+..+....+.....++|..-+-+ ..+. +.++||.++++..+..+++|
T Consensus 11 lPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Pr---k~l~~~d~~~tL~e~gL~p~~~l~v~ 79 (80)
T smart00166 11 LPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPR---RTFTKDDYSKTLLELALLPSSTLVLE 79 (80)
T ss_pred cCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCC---cCCccccccCCHHHCCCCCceEEEEe
Confidence 4888889999999999999999997666666667777653322 2343 33689999999999998886
No 78
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.98 E-value=1.2 Score=51.14 Aligned_cols=65 Identities=8% Similarity=0.101 Sum_probs=54.5
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHHHcC---CCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEe
Q 002138 206 QETNSLLVKISLEDNKVDLYKRACNLFI---SVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (960)
Q Consensus 206 ~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~---i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (960)
-++..+.+.++..+||.+||+++....+ ++.+++||+ |. ..+|+|. ++|.++++..+..|++=+.
T Consensus 8 l~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLI-y~----GkiL~Dd-~tL~dy~I~e~~~Ivvmv~ 75 (378)
T TIGR00601 8 LQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLI-YS----GKILSDD-KTVREYKIKEKDFVVVMVS 75 (378)
T ss_pred CCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEE-EC----CEECCCC-CcHHHcCCCCCCEEEEEec
Confidence 3456788999999999999999999998 999999999 43 4567775 7999999999998887555
No 79
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=87.30 E-value=2.4 Score=39.69 Aligned_cols=71 Identities=10% Similarity=0.094 Sum_probs=54.6
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCcccccccccccccccccc-------CCCCEEEEEEe-e
Q 002138 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSA-------KPGEEVFLQLQ-V 277 (960)
Q Consensus 206 ~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l-------~~~q~IllE~k-~ 277 (960)
++...+.+.....+|+-+|++.+-.+.+.|+++.||| .. ..+|+| ++||.|.|+ +....+-|-++ .
T Consensus 9 R~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~-kd----~qvLeD-~kTL~d~g~t~~~akaq~pA~vgLa~r~~ 82 (119)
T cd01788 9 RHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLY-KD----DQLLDD-GKTLGDCGFTSQTARPQAPATVGLAFRSS 82 (119)
T ss_pred ecceEEEeecCCcccHHHHHHHHHHHhcCChhHheee-cC----ceeecc-cccHHHcCccccccccCCCCeEEEEEecC
Confidence 3444556677789999999999999999999999999 32 246776 489999999 55667777777 4
Q ss_pred cCccc
Q 002138 278 HGFSD 282 (960)
Q Consensus 278 ~g~w~ 282 (960)
+|.+.
T Consensus 83 d~~fE 87 (119)
T cd01788 83 DDTFE 87 (119)
T ss_pred CCCcc
Confidence 45554
No 80
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=87.23 E-value=3.6 Score=36.90 Aligned_cols=69 Identities=9% Similarity=-0.034 Sum_probs=49.3
Q ss_pred ecCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCcccccc----ccccccccccccCCCCEEEEE
Q 002138 205 SQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLM----NDRVTMSDDFSAKPGEEVFLQ 274 (960)
Q Consensus 205 ~~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL----~d~~~tL~d~~l~~~q~IllE 274 (960)
.+++..+...|...+|+.+|+..+... +-.+++++|-.-+-......+ .+.+.||+++||.....++++
T Consensus 11 lp~G~Rl~rrF~~~~tl~~l~~fv~~~-~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V~ 83 (85)
T cd01774 11 LPNGTRVERRFLFTQSLRVIHDFLFSL-KETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFVQ 83 (85)
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHhC-CCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEEe
Confidence 478888999999999999999999543 334567777643322222211 345689999999988888875
No 81
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=87.21 E-value=3 Score=36.96 Aligned_cols=70 Identities=9% Similarity=-0.088 Sum_probs=52.6
Q ss_pred ecCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEe
Q 002138 205 SQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (960)
Q Consensus 205 ~~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (960)
.+++......|...+++.+|+..+... +.+.+.++|.--+-..... -.+.+.||.++||.....++||.+
T Consensus 11 lP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~-~~d~~~TL~e~gL~p~~~L~Veer 80 (80)
T cd01771 11 TPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLT-QLDPNFTLLELKLYPQETLILEER 80 (80)
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCc-CCCCCCcHHHcCCCCCcEEEEEcC
Confidence 588888999999999999999999654 5566678776433222222 124568999999999999999853
No 82
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=85.30 E-value=6.2 Score=35.15 Aligned_cols=70 Identities=11% Similarity=0.005 Sum_probs=54.0
Q ss_pred ecCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEe
Q 002138 205 SQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (960)
Q Consensus 205 ~~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (960)
.++++.....|...+++.+|+..+-. .+.+.+++.|.--.-+..... .+.+.||+++||....+++||.+
T Consensus 12 lP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~-~d~~~TL~e~GL~P~~~LfVq~r 81 (82)
T cd01773 12 YPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSH-LDYDITLQEAGLCPQETVFVQER 81 (82)
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCC-cccCCCHHHcCCCCCcEEEEecC
Confidence 58889999999999999999998876 466778888874333322222 34458999999999999999754
No 83
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=85.07 E-value=5.7 Score=34.71 Aligned_cols=65 Identities=11% Similarity=0.009 Sum_probs=47.7
Q ss_pred ecCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccc--cccccccccccCCCCEEEEE
Q 002138 205 SQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMN--DRVTMSDDFSAKPGEEVFLQ 274 (960)
Q Consensus 205 ~~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~--d~~~tL~d~~l~~~q~IllE 274 (960)
.+|+..+...|+..+|+.+|+..+.....- ...++|+.-+-+. .+. +.++||.++||. +..++++
T Consensus 9 lpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~---~~~~~~~~~TL~e~gL~-~s~~~~~ 75 (77)
T cd01767 9 LPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRR---VLTDLDYELTLQEAGLV-NEVVFQR 75 (77)
T ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCc---cCCCCCccCcHHHcCCc-cceEEEE
Confidence 478888999999999999999999765433 5678888544322 233 367899999999 4555553
No 84
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=82.03 E-value=6.2 Score=34.89 Aligned_cols=61 Identities=8% Similarity=-0.039 Sum_probs=45.1
Q ss_pred ecCCCeEEEEEccCCcHHHHHHHHHHHcCCC-CCceEEEEecCCccccccccccccccccccCCC
Q 002138 205 SQETNSLLVKISLEDNKVDLYKRACNLFISV-SEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPG 268 (960)
Q Consensus 205 ~~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~-~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~ 268 (960)
.+|+..++.+|...+||++|++.+.....-+ ...+.|.--+- ...+.+.++||+|++|...
T Consensus 11 lpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP---~k~l~~~~~Tl~eagL~~s 72 (79)
T cd01770 11 LADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFP---VKELSDESLTLKEANLLNA 72 (79)
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCC---CcccCCCCCcHHHCCCcCc
Confidence 4788899999999999999999998765432 35677764332 2235555899999999843
No 85
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=79.06 E-value=8.4 Score=34.08 Aligned_cols=67 Identities=12% Similarity=0.076 Sum_probs=45.1
Q ss_pred eEEEEeeecCCCe--EEEEEccCCcHHHHHHHHHHHcC-C-CCCceEEEEecCCccccccccccccccccc--cCCCCEE
Q 002138 198 LQIRLSVSQETNS--LLVKISLEDNKVDLYKRACNLFI-S-VSEMLYIWDFSGQTTQFLMNDRVTMSDDFS--AKPGEEV 271 (960)
Q Consensus 198 l~l~l~~~~~~~~--~~~~~Sk~~Ti~eL~~~v~~lf~-i-~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~--l~~~q~I 271 (960)
+.|.+- ..++.. +++.+...+||.+|++++.+.++ . +++++||- | .+.+|+|. .||.+.. +..+..|
T Consensus 2 i~l~IK-~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLI-y----~GKiLkD~-~tL~~~~~~~~~~~ti 74 (79)
T cd01790 2 VTLLIK-SPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLI-Y----SGKLLPDH-LKLRDVLRKQDEYHMV 74 (79)
T ss_pred eEEEEE-CCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEE-E----cCeeccch-hhHHHHhhcccCCceE
Confidence 444432 344445 44555899999999999999884 4 46888887 3 34567775 7888874 5555544
No 86
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=78.43 E-value=15 Score=31.68 Aligned_cols=65 Identities=17% Similarity=0.146 Sum_probs=45.1
Q ss_pred ecCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEe
Q 002138 205 SQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (960)
Q Consensus 205 ~~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (960)
.+|++...+.+-...|+.|....+|+..++.++.+.+.... ..+.--++. ++..-.++.+.+|.+
T Consensus 7 LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~-~~k~l~~~~------d~~~L~~~El~ve~~ 71 (71)
T PF02196_consen 7 LPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVG-EKKPLDWDQ------DSSSLPGEELRVEKR 71 (71)
T ss_dssp ETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEE-EEEEE-TTS------BGGGGTTSEEEEEES
T ss_pred CCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcC-CCccccCCC------ceeeecCCEEEEEeC
Confidence 48888999999999999999999999999999998888543 112112222 233445789998863
No 87
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=77.88 E-value=11 Score=33.16 Aligned_cols=66 Identities=5% Similarity=-0.090 Sum_probs=48.1
Q ss_pred ecCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccc--cccccccccccCCCCEEEEE
Q 002138 205 SQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMN--DRVTMSDDFSAKPGEEVFLQ 274 (960)
Q Consensus 205 ~~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~--d~~~tL~d~~l~~~q~IllE 274 (960)
.+|+..+...|+..+|+.+|+..+.....-. ..+.|---+- ...+. +.++||.+++|.+...++|+
T Consensus 11 lp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fP---rk~~~~~d~~~TL~elgL~Psa~L~v~ 78 (79)
T cd01772 11 LLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFP---RKVFTEDDMEKPLQELGLVPSAVLIVT 78 (79)
T ss_pred CCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCC---CeECCcccccCCHHHCCCCCceEEEEe
Confidence 4788889999999999999999997654322 4466553222 12232 44689999999988888885
No 88
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=77.08 E-value=1.2 Score=44.96 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=16.4
Q ss_pred cccccccccCCCccchHHHHHHHhc
Q 002138 336 LLGLTGLRNLGNTCFMNSAIQCLAH 360 (960)
Q Consensus 336 ~~g~~GL~NlGNTCYmNSvLQ~L~~ 360 (960)
...++|+.|.+|+|++||++|.+..
T Consensus 30 ~~eft~~PN~~dnCWlNaL~QL~~~ 54 (193)
T PF05408_consen 30 KMEFTGLPNNHDNCWLNALLQLFRY 54 (193)
T ss_dssp --EEE----SSSTHHHHHHHHHHHH
T ss_pred ceEEecCCCCCCChHHHHHHHHHHH
Confidence 4466799999999999999998743
No 89
>PLN02560 enoyl-CoA reductase
Probab=74.60 E-value=9.9 Score=42.62 Aligned_cols=61 Identities=15% Similarity=0.085 Sum_probs=47.5
Q ss_pred EEEEccCCcHHHHHHHHHHHcCC-CCCceEEEEec--CCccccccccccccccccccCCCCEEEE
Q 002138 212 LVKISLEDNKVDLYKRACNLFIS-VSEMLYIWDFS--GQTTQFLMNDRVTMSDDFSAKPGEEVFL 273 (960)
Q Consensus 212 ~~~~Sk~~Ti~eL~~~v~~lf~i-~~e~~RLW~~~--~~~~~~lL~d~~~tL~d~~l~~~q~Ill 273 (960)
++.++..+|+++|++.+-+..++ +++++||+... ++.....|+| +++|.+.++.+|.++.+
T Consensus 17 ~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d-~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 17 GLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDD-SKSLKDYGLGDGGTVVF 80 (308)
T ss_pred eEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCC-CCCHHhcCCCCCceEEE
Confidence 68889999999999999999886 78999999532 2222334555 36899999999888776
No 90
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=73.99 E-value=5.8 Score=34.68 Aligned_cols=51 Identities=10% Similarity=0.072 Sum_probs=41.2
Q ss_pred cCCcHHHHHHHHHHHcC--CC-CCceEEEEecCCccccccccccccccccccCCCCEEEE
Q 002138 217 LEDNKVDLYKRACNLFI--SV-SEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFL 273 (960)
Q Consensus 217 k~~Ti~eL~~~v~~lf~--i~-~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Ill 273 (960)
..+||.+|+.++.+.++ ++ ++++||- |. ...|.|. .||.+.++..|..|.|
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLI-y~----GKiL~D~-~TL~dygI~~gstlhL 72 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLI-HC----GRKLKDD-QTLDFYGIQSGSTIHI 72 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEE-eC----CcCCCCC-CcHHHcCCCCCCEEEE
Confidence 46899999999999974 64 8888987 43 3457775 7999999999988876
No 91
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=73.48 E-value=3.4 Score=41.96 Aligned_cols=35 Identities=29% Similarity=0.496 Sum_probs=26.9
Q ss_pred Eeec--CCCCCeEEEEEeccccchhhhhhhhhccccccccCCCcEEEEcCCcceecCcc
Q 002138 885 NHYG--GMGGGHYTAFVDIDYHSAFKQYEYLKTQITSVQLGHKRWFEFDDDRVYPVSED 941 (960)
Q Consensus 885 nH~G--~l~gGHYtAy~k~~~~~~~~~~~~~~~~~~~~~~~~~~Wy~fdDs~Vs~vs~~ 941 (960)
.|.| --|.||-++|++. .++||.+||.++.+-+++
T Consensus 129 f~agi~~~g~~Havfa~~t----------------------s~gWy~iDDe~~y~~tPd 165 (193)
T PF05408_consen 129 FHAGIFLKGQEHAVFACVT----------------------SDGWYAIDDEDFYPWTPD 165 (193)
T ss_dssp EEEEEEEESTTEEEEEEEE----------------------TTCEEEEETTEEEE----
T ss_pred hhhHheecCCcceEEEEEe----------------------eCcEEEecCCeeeeCCCC
Confidence 4666 3568999999998 889999999999998764
No 92
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=70.62 E-value=25 Score=30.61 Aligned_cols=65 Identities=17% Similarity=0.204 Sum_probs=50.1
Q ss_pred ecCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEe
Q 002138 205 SQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (960)
Q Consensus 205 ~~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (960)
.+|++...+.+-...|++++..++|+.-++..+.+.++.. +..+...++ .|+..-.|+++.+|-+
T Consensus 6 LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~-g~~k~l~~~------qD~~~L~~~El~vE~r 70 (73)
T cd01817 6 LPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLV-GGDKPLVLD------QDSSVLAGQEVRLEKR 70 (73)
T ss_pred CCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEe-cCCcccccC------CccceeeccEEEEEEe
Confidence 4788888999999999999999999999999999998876 322222222 2455556889999865
No 93
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=70.28 E-value=11 Score=44.17 Aligned_cols=62 Identities=13% Similarity=0.235 Sum_probs=54.2
Q ss_pred CeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEe
Q 002138 209 NSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (960)
Q Consensus 209 ~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (960)
+...+.+....||.+||+.+...|.++.++++|-. ...+|+|. +||...+|.+|-+|=|-++
T Consensus 25 dk~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIf-----aGrILKD~-dTL~~~gI~Dg~TvHLVik 86 (493)
T KOG0010|consen 25 DKYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIY-----AGRILKDD-DTLKQYGIQDGHTVHLVIK 86 (493)
T ss_pred cceeEecccchHHHHHHHHHHHhcCCChhHeeeee-----cCccccCh-hhHHHcCCCCCcEEEEEec
Confidence 48899999999999999999999999999998873 45678875 7999999999999888665
No 94
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=70.03 E-value=4 Score=34.06 Aligned_cols=36 Identities=17% Similarity=0.407 Sum_probs=28.3
Q ss_pred CCCCCccccCcceeEEEEEee--eCCCeEEEEEEeeEe
Q 002138 807 DMWYCPRCKKHWQASKKLDLW--RSPDILVIHLKRFSF 842 (960)
Q Consensus 807 d~wyC~~Ck~~~~AtKk~~l~--~lP~iLiIhLKRF~~ 842 (960)
++|.||+|..+.--.|.+..- .+-+++=|++++|-.
T Consensus 3 ~~~kCpKCgn~~~~ekei~~tg~~lskifdvq~n~f~~ 40 (68)
T COG3478 3 NAFKCPKCGNTNYEEKEIAATGGGLSKIFDVQNNKFIV 40 (68)
T ss_pred ccccCCCcCCcchhhceeeccCCCcceeEEecccEEEE
Confidence 578999999887666666653 678889999999853
No 95
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=69.10 E-value=8.2 Score=34.86 Aligned_cols=57 Identities=7% Similarity=0.144 Sum_probs=43.5
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccC
Q 002138 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAK 266 (960)
Q Consensus 206 ~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~ 266 (960)
+....+.+.....+|+-+|+..+--+..=|.++.|||..... .+|.| .+||.|+|+.
T Consensus 9 R~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~e---qlL~D-~ktL~d~gft 65 (110)
T KOG4495|consen 9 RHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTE---QLLDD-GKTLGDCGFT 65 (110)
T ss_pred ecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHH---HHhhc-cchhhhcccc
Confidence 334456667778899999999999999889999999975422 45666 4789988764
No 96
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=67.01 E-value=17 Score=28.36 Aligned_cols=61 Identities=13% Similarity=0.177 Sum_probs=43.5
Q ss_pred CCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEE
Q 002138 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFL 273 (960)
Q Consensus 207 ~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Ill 273 (960)
++....+.++...|+.++++.+++.++++++.++|+.. ...+.+. ..+.+.++..+..|.+
T Consensus 6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~-----~~~~~~~-~~~~~~~~~~~~~i~~ 66 (69)
T cd00196 6 DGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVN-----GKILPDS-LTLEDYGLQDGDELVL 66 (69)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEEC-----CeECCCC-CcHHHcCCCCCCEEEE
Confidence 45667788889999999999999999999999999742 1223222 2334556666666665
No 97
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=65.48 E-value=26 Score=30.48 Aligned_cols=66 Identities=17% Similarity=0.118 Sum_probs=48.8
Q ss_pred ecCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEE
Q 002138 205 SQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQL 275 (960)
Q Consensus 205 ~~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~ 275 (960)
.+|++...+.+-...|+.++...+|+..+++++.+.+....+.. ...+ +. -+++....++.|.+|.
T Consensus 6 LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~~~~-~~~~-~~---~~d~~~L~~~El~Ve~ 71 (72)
T cd01760 6 LPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLGLDE-KKPL-DL---DTDSSSLAGEELEVEP 71 (72)
T ss_pred CcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEecCCC-cCCc-Cc---hhhhhhhcCCEEEEEe
Confidence 47888899999999999999999999999999999888663322 0111 11 1245555678888874
No 98
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=63.49 E-value=19 Score=30.57 Aligned_cols=38 Identities=13% Similarity=0.118 Sum_probs=26.3
Q ss_pred ecCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEE
Q 002138 205 SQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIW 242 (960)
Q Consensus 205 ~~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW 242 (960)
.++....++.+++..++.++.+.+|+.|++++++..|-
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~ 40 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLK 40 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEE
Confidence 35566789999999999999999999999999866655
No 99
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=63.27 E-value=18 Score=31.59 Aligned_cols=54 Identities=13% Similarity=0.023 Sum_probs=41.1
Q ss_pred ccCCcHHHHHHHHHHHcC-CCCCceEEEEecCCccccccccccccccccccCCCCEEEE
Q 002138 216 SLEDNKVDLYKRACNLFI-SVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFL 273 (960)
Q Consensus 216 Sk~~Ti~eL~~~v~~lf~-i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Ill 273 (960)
+...|+.+|++.+-+..+ ++.+++||+... ....|.+. .+|.+.++..|.+|.+
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~---~g~~L~d~-~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEP---KGKSLKDD-DTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCC---CCcccCCc-ccHhhcCCCCCCEEEE
Confidence 567899999999988876 468899998433 33455554 5899999988887765
No 100
>smart00455 RBD Raf-like Ras-binding domain.
Probab=63.25 E-value=31 Score=29.71 Aligned_cols=64 Identities=16% Similarity=0.121 Sum_probs=47.6
Q ss_pred ecCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEE
Q 002138 205 SQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQL 275 (960)
Q Consensus 205 ~~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~ 275 (960)
.+|+....+.+-...|+.|+...+|+..++.++.+.+... +..+.--++. ++..-.|+.+.+|.
T Consensus 6 LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~-g~~k~ldl~~------~~~~l~~~el~ve~ 69 (70)
T smart00455 6 LPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLR-GEKKPLDLNQ------PISSLDGQELVVEE 69 (70)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEc-CCCcceecCC------ccccccCceEEEEe
Confidence 4788889999999999999999999999999998888853 2222212222 23444678888875
No 101
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=55.84 E-value=68 Score=28.59 Aligned_cols=64 Identities=17% Similarity=0.146 Sum_probs=38.7
Q ss_pred cceeEEeCCCCchHHHHHHHHhhcccCCccceeeee-eeccceeeecCCCcccccc--ccCCCcEEE
Q 002138 540 APFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAE-IYRSKIFRVLDEPSDLLGL--IRDEDKLVA 603 (960)
Q Consensus 540 ~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~e-~~~~~~~~~~~~~~~~~~~--I~~~d~i~~ 603 (960)
...+..+++..++.+|+..|...+|++...+-+... -........+.|....|.. +.++..|.+
T Consensus 14 ~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V 80 (87)
T PF14560_consen 14 RSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHV 80 (87)
T ss_dssp SEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEE
T ss_pred eeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEE
Confidence 345678999999999999999999998765444332 2233344444444444432 444444443
No 102
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=52.48 E-value=48 Score=29.04 Aligned_cols=71 Identities=11% Similarity=0.141 Sum_probs=44.4
Q ss_pred EEeeecC-CCeEEEEEccCCcHHHHHHHHHHHcCCCCCc---eEEEEecCCccccccccccccccccccCCCCEEEE
Q 002138 201 RLSVSQE-TNSLLVKISLEDNKVDLYKRACNLFISVSEM---LYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFL 273 (960)
Q Consensus 201 ~l~~~~~-~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~---~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Ill 273 (960)
++.+... +..+.+.+-..-++++|...+.+.++++..+ ..-|... ......|.. +.||.++++.+|..+.|
T Consensus 4 rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~-~~~g~~L~~-~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 4 RVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLA-RAGGRPLDP-DQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG--GGTEEEET-TSBCGGGT--TT-EEEE
T ss_pred EEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEE-ecCCcccCC-cCcHhHcCCCCCCEEEe
Confidence 3444444 3788999999999999999999999986433 3468765 344445555 58999999999988876
No 103
>PF01473 CW_binding_1: Putative cell wall binding repeat; InterPro: IPR018337 The cell wall-binding repeat (CW) is an about 20 amino acid residue module, essentially found in two bacterial Gram-positive protein families; the choline binding proteins and glucosyltransferases (2.4.1.5 from EC). In choline-binding proteins cell wall binding repeats bind to choline moieties of both teichoic and lipoteichoic acids, two components peculiar to the cell surface of Gram-positive bacteria [, ]. In glucosyltransferases the region spanning the CW repeats is a glucan binding domain []. Several crystal structures of CW have been solved [, ]. In the choline binding protein LytA, the repeats adopt a solenoid fold consisting exclusively of beta-hairpins that stack to form a left-handed superhelix with a boomerang-like shape. The choline groups bind between beta-hairpin 'steps' of the superhelix []. In Cpl-1 CW repeats assemble in two sub-domains: an N-terminal superhelical moiety similar to the LytA one and a C-terminal beta-sheet involved in interactions with the lysozyme domain. Choline is bound between repeats 1 and 2, and, 2 and 3 of the superhelical sub-domain []. Some proteins known to contain cell-wall binding repeats include: Pneumococcal N-acetylmuramoyl-L-alanine amidase (autolysin, lytA) (3.5.1.28 from EC). It is a surface-exposed enzyme that rules the self-destruction of pneumococcal cells through degradation of their peptidoglycan backbone. It mediates the release of toxic substances that damage the host tissues. Pneumococcal endo-beta-N-acetylglucosaminidase (lytB) (3.2.1.96 from EC). It plays an important role in cell wall degradation and cell separation. Pneumococcal teichoic acid phosphorylcholine esterase (pce or cbpE), a cell wall hydrolase important for cellular adhesion and colonisation. Lactobacillales glucosyltransferase. It catalyses the transfer of glucosyl units from the cleavage of sucrose to a growing chain of glucan. Clostridium difficile toxin A (tcdA) and toxin B (tcdb). They are the causative agents of the antibiotic-associated pseudomembranous colitis. They are intracellular acting toxins that reach their targets after receptor-mediated endocytosis. Clostridium acetobutylicum cspA protein. Siphoviridae bacteriophages N-acetylmuramoyl-L-alanine amidase. It lyses the bacterial host cell wall. Podoviridae lysozyme protein (cpl-1). It is capable of digesting the pneumococcal cell wall. The cell wall binding repeats are also known as the choline-binding repeats (ChBr) or the choline-binding domain (ChBD). ; PDB: 1GVM_C 2BML_B 1HCX_A 1OBA_A 1H09_A 2J8F_A 2IXU_A 2J8G_A 2IXV_A 2X8O_A ....
Probab=51.79 E-value=11 Score=23.65 Aligned_cols=10 Identities=40% Similarity=1.129 Sum_probs=8.7
Q ss_pred CCcEEEEcCC
Q 002138 924 HKRWFEFDDD 933 (960)
Q Consensus 924 ~~~Wy~fdDs 933 (960)
++.||+|+++
T Consensus 7 ~~~wYy~~~~ 16 (19)
T PF01473_consen 7 NGNWYYFDSD 16 (19)
T ss_dssp TTEEEEETTT
T ss_pred CCEEEEeCCC
Confidence 7899999875
No 104
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=51.38 E-value=50 Score=29.68 Aligned_cols=61 Identities=18% Similarity=0.227 Sum_probs=49.9
Q ss_pred eEEEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhcccCCccceeeeeeecc-ceeeecCCCcc
Q 002138 526 MTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYRS-KIFRVLDEPSD 590 (960)
Q Consensus 526 ~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~e~~~~-~~~~~~~~~~~ 590 (960)
..|.++..||.+ ..+.|....+.+++++.|.......+.....++|..-. .+-+.|+|.+.
T Consensus 3 ~vvkv~~~Dg~s----K~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P~l~lER~~EDHE~ 64 (85)
T cd01787 3 QVVKVYSEDGAS----KSLEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHLPHLQLERLFEDHEL 64 (85)
T ss_pred eEEEEEecCCCe----eEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEecchhhhhhhccchHH
Confidence 356778888875 57889999999999999999999999999999987654 67777776543
No 105
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=49.97 E-value=21 Score=29.38 Aligned_cols=58 Identities=12% Similarity=0.102 Sum_probs=43.8
Q ss_pred CCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEE
Q 002138 208 TNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEV 271 (960)
Q Consensus 208 ~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~I 271 (960)
+..+.+.+...+++..+++++-+.-+||+.+.||- |. ...++|. .|-.+.++.-|..+
T Consensus 10 ~KeIeidIep~DkverIKErvEEkeGIPp~qqrli-~~----gkqm~DD-~tA~~Y~~~~GSVl 67 (70)
T KOG0005|consen 10 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI-YA----GKQMNDD-KTAAHYNLLGGSVL 67 (70)
T ss_pred cceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhh-hc----ccccccc-ccHHHhhhccceeE
Confidence 34578899999999999999999999999999987 32 3446553 56666666655443
No 106
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=48.75 E-value=78 Score=28.01 Aligned_cols=51 Identities=25% Similarity=0.165 Sum_probs=41.3
Q ss_pred ceeEEeCCCCchHHHHHHHHhhcccC-Cccceeeeeeecc-ceeeecCCCccc
Q 002138 541 PFTVTVPKYGRFQDLIDALSTKCFLR-NHEKLLVAEIYRS-KIFRVLDEPSDL 591 (960)
Q Consensus 541 ~~~v~v~k~~~~~dl~~~l~~~~~~~-~~~~l~~~e~~~~-~~~~~~~~~~~~ 591 (960)
-.+|.|++..+..+++..+.+.+++. ++....++|+... ...+.+.+...+
T Consensus 14 ~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~~~~~er~L~~~e~p 66 (87)
T cd01768 14 YKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLGDGGLERLLLPDECP 66 (87)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEECCceEEEEeCCCCCh
Confidence 35689999999999999999999998 7888999998876 556666654444
No 107
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=48.50 E-value=57 Score=28.96 Aligned_cols=38 Identities=8% Similarity=0.032 Sum_probs=33.7
Q ss_pred eEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCC
Q 002138 210 SLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQ 247 (960)
Q Consensus 210 ~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~ 247 (960)
.+.+++...-+..+|.+++++.++++++.+.|+.....
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~ 49 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEA 49 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCC
Confidence 67889999999999999999999999999999965443
No 108
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=45.48 E-value=39 Score=30.39 Aligned_cols=45 Identities=9% Similarity=0.158 Sum_probs=37.0
Q ss_pred eeEEEEeeecCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEE
Q 002138 197 PLQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIW 242 (960)
Q Consensus 197 Pl~l~l~~~~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW 242 (960)
|.+|++.+ +|+..+++.+-+.++..++++.++...++|.+-++-.
T Consensus 1 ~V~L~V~L-pdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~~YF 45 (87)
T cd01777 1 DVELRIAL-PDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQNYF 45 (87)
T ss_pred CeEEEEEc-cCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHHhhe
Confidence 34666654 6788999999999999999999999999998755433
No 109
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=45.36 E-value=72 Score=33.80 Aligned_cols=63 Identities=10% Similarity=0.099 Sum_probs=37.3
Q ss_pred CeEEEEEccCCcHHHHHHHHHHHcCCCCC---ceEEEEecCCccccccccccccccccccCCCCEEEEE
Q 002138 209 NSLLVKISLEDNKVDLYKRACNLFISVSE---MLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (960)
Q Consensus 209 ~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e---~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (960)
+...+.+.+..||.+|.+.+.+..+++.+ .+|+|..++..-...+.. +..+... .....+.+|
T Consensus 34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~-d~~i~~l--~~~~~~r~E 99 (213)
T PF14533_consen 34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSE-DEPISSL--NDYITLRIE 99 (213)
T ss_dssp -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-T-TSBGGGS----TTEEEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCC-CCchhhc--cCcceeeee
Confidence 46789999999999999999999998754 899999877655555553 3455544 222246666
No 110
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=44.99 E-value=1.3e+02 Score=27.84 Aligned_cols=69 Identities=17% Similarity=0.273 Sum_probs=53.2
Q ss_pred eEEEEeeecCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEE
Q 002138 198 LQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFL 273 (960)
Q Consensus 198 l~l~l~~~~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Ill 273 (960)
+.|++.- .+++.+.+.+.+...++-|++.-|+.-+++...+|+. +.+ ..+.. ..|..+++...|..|=+
T Consensus 21 i~LKV~g-qd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFl-FdG----~rI~~-~~TP~~L~mEd~D~Iev 89 (99)
T KOG1769|consen 21 INLKVKG-QDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFL-FDG----QRIRE-THTPADLEMEDGDEIEV 89 (99)
T ss_pred EEEEEec-CCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEE-ECC----cCcCC-CCChhhhCCcCCcEEEE
Confidence 4556543 5577889999999999999999999999999999987 333 23444 36888888888776654
No 111
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=43.16 E-value=16 Score=46.89 Aligned_cols=104 Identities=14% Similarity=0.070 Sum_probs=73.4
Q ss_pred CCCCHHHHHHHhhCccccCCCCCCCCccccCcceeEEEEEeeeCCCeEEEEEEeeEecccccccCCeeeeccCCCCCCCC
Q 002138 786 ESVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLSN 865 (960)
Q Consensus 786 ~~isL~dCL~~f~~~E~L~~~d~wyC~~Ck~~~~AtKk~~l~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~ 865 (960)
....+.+|+..|+....+..+...-|+.|.....-. ...-. .+++|+..|+.......-+....+.+++.++.+-.
T Consensus 480 ~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~ 555 (842)
T KOG1870|consen 480 PVEILFDCFNKIFAADELKLDSIYSDEELFDYELGV--LKVQG--SIYAIIVVRFRSRLPRSKGIRSHVSSKLFGLPLLV 555 (842)
T ss_pred cceeccchhhhhhccCccccccccCCcceEEeeccc--ccccc--cceEEEEEeeccccccccCcccCCCccccCCccee
Confidence 345688999999999876666777777776543221 11111 16888888887655445577788999988888876
Q ss_pred ccccCCCCCCccEEEEEEEEeecCCCCCeE
Q 002138 866 YVCCKNSQLSNRYVLYAISNHYGGMGGGHY 895 (960)
Q Consensus 866 ~v~~~~~~~~~~YdL~AVinH~G~l~gGHY 895 (960)
++... .....++|..+++|.++...||+
T Consensus 556 ~~~~~--~~~t~~~l~~~~~~~~s~~~~~~ 583 (842)
T KOG1870|consen 556 SVLSG--AQSTEEDLLSVICHRTSRYSREP 583 (842)
T ss_pred eccCC--CcccccchhhHHhhcccccCCcC
Confidence 66542 24578999999999998877777
No 112
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=41.28 E-value=58 Score=36.69 Aligned_cols=79 Identities=19% Similarity=0.143 Sum_probs=40.6
Q ss_pred cccccccccCCCccchHHHHHHHhcChH-HHHHHHhccccccccCCCCCCchHHHHHHHHHHHHhcCCCCCccChHHHHH
Q 002138 336 LLGLTGLRNLGNTCFMNSAIQCLAHTPE-IVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKL 414 (960)
Q Consensus 336 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~-f~~~~l~~~~~~~~~~n~~~~~~~l~~al~~L~~~l~~~~~~~i~P~~f~~ 414 (960)
..|..=|.=.-|.||+||++=.|=++.. |+.- .+.. +..++..+ .|..|..
T Consensus 99 ~~g~~~Lkq~dNNCwVna~~~~LQ~~~~~f~~~-------------------~l~~----aw~~f~~G-----~~~~fVa 150 (320)
T PF08715_consen 99 VNGFRVLKQSDNNCWVNAACLQLQALKIKFKSP-------------------GLDE----AWNEFKAG-----DPAPFVA 150 (320)
T ss_dssp ETTEEEE---TTTHHHHHHHHHHTTST--BSSH-------------------HHHH----HHHHHHTT-------HHHHH
T ss_pred ECCEEEEEecCCCcHHHHHHHHHHhcCCccCCH-------------------HHHH----HHHHHhCC-----ChHHHHH
Confidence 4566777777899999999877765532 2210 1122 22222121 4566665
Q ss_pred HHhhcCCCCCCCCCCCHHHHHHHHHHHHH
Q 002138 415 KLANFAPQFSGYNQHDSQEFLAFLLDGLH 443 (960)
Q Consensus 415 ~l~~~~~~F~~~~QQDA~EfL~~LLd~L~ 443 (960)
.+-.. ..+.-++--||+++|..||..++
T Consensus 151 ~~Ya~-~~~~~G~~gDa~~~L~~ll~~~~ 178 (320)
T PF08715_consen 151 WCYAS-TNAKKGDPGDAEYVLSKLLKDAD 178 (320)
T ss_dssp HHHHH-TT--TTS---HHHHHHHHHTTB-
T ss_pred HHHHH-cCCCCCCCcCHHHHHHHHHHhcc
Confidence 55443 34556788999999999997655
No 113
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=40.77 E-value=72 Score=28.22 Aligned_cols=58 Identities=16% Similarity=0.169 Sum_probs=36.6
Q ss_pred CCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEeecCccc
Q 002138 218 EDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQVHGFSD 282 (960)
Q Consensus 218 ~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~~g~w~ 282 (960)
..++.||+.++|+.|+++.+.++|-...+.+. .++. .... --.+++++|-++.+-.|.
T Consensus 20 A~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~---VddE-eyF~---tLp~nT~lm~L~~ge~W~ 77 (78)
T PF02017_consen 20 ASSLEELLEKACDKLQLPEEPVRLVLEEDGTE---VDDE-EYFQ---TLPDNTVLMLLEKGEKWT 77 (78)
T ss_dssp ESSHHHHHHHHHHHHT-SSSTCEEEETTTTCB---ESSC-HHHC---CSSSSEEEEEEESSS--S
T ss_pred cCCHHHHHHHHHHHhCCCCcCcEEEEeCCCcE---EccH-HHHh---hCCCCCEEEEECCCCccC
Confidence 47899999999999999998899986655442 2222 1111 123567777666666664
No 114
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=39.64 E-value=27 Score=41.11 Aligned_cols=75 Identities=21% Similarity=0.342 Sum_probs=63.1
Q ss_pred CCCCCccceEEEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhcccCCccceeeeeeecc-ceeeecCCCcccccccc
Q 002138 518 IPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYRS-KIFRVLDEPSDLLGLIR 596 (960)
Q Consensus 518 iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~e~~~~-~~~~~~~~~~~~~~~I~ 596 (960)
++..+.+.+.|.++..||.. ..+.|....+.+|+++.|.....+..++..-++|.|-| .+-+.|+|.+..+..+.
T Consensus 181 lk~a~vrklvVKvfseDgas----ksL~Vder~tardV~~lL~eKnH~~~d~~W~LvEh~P~L~iER~fEDHElVVEvls 256 (622)
T KOG3751|consen 181 LKEAKVRKLVVKVFSEDGAS----KSLLVDERMTARDVCQLLAEKNHCADDEDWCLVEHYPHLQIERVFEDHELVVEVLS 256 (622)
T ss_pred cccccccceeEEEEccCCce----eeEeecccccHHHHHHHHHHhhhhhcccceeeeeecchhhhhhhhhhHHHHHHHHh
Confidence 45566788899999999986 56788999999999999999988888899999999988 78899998776655544
No 115
>KOG3556 consensus Familial cylindromatosis protein [General function prediction only]
Probab=37.50 E-value=9.2 Score=44.51 Aligned_cols=37 Identities=19% Similarity=0.449 Sum_probs=28.3
Q ss_pred EEeeeCCCeEEEEEEeeEecccccccCCeeeeccCCC
Q 002138 824 LDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDD 860 (960)
Q Consensus 824 ~~l~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~ 860 (960)
+.+...|..+||+.-||.-+.-+-.||-.-+..|+.+
T Consensus 516 ik~~e~pSc~iiqmprfgk~~km~~~i~pS~~l~Vtd 552 (724)
T KOG3556|consen 516 IKSTETPSCQIIQMPRFGKSQKMPAAIGPSISLPVTD 552 (724)
T ss_pred cccccCcchhheeccccCcccccchhcCCceEeeccc
Confidence 3566789999999999987665666777777777644
No 116
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=36.87 E-value=79 Score=29.92 Aligned_cols=54 Identities=4% Similarity=-0.023 Sum_probs=39.9
Q ss_pred cC-CCeEEEEEccCCcHHHHHHHHHHHcC-----CC--CCceEEEEecCCcccccccccccccccccc
Q 002138 206 QE-TNSLLVKISLEDNKVDLYKRACNLFI-----SV--SEMLYIWDFSGQTTQFLMNDRVTMSDDFSA 265 (960)
Q Consensus 206 ~~-~~~~~~~~Sk~~Ti~eL~~~v~~lf~-----i~--~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l 265 (960)
+| +..=...++..+||.+|++++..... +| .+++||- | ...+|.|. .||.++++
T Consensus 12 ~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLI-y----sGKiLeD~-~TL~d~~~ 73 (113)
T cd01814 12 YDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLI-S----AGKILENS-KTVGECRS 73 (113)
T ss_pred cCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEE-e----CCeecCCC-CcHHHhCC
Confidence 44 34446788999999999999997663 33 7788887 3 34567774 79999883
No 117
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=35.86 E-value=2.7e+02 Score=26.31 Aligned_cols=67 Identities=12% Similarity=0.153 Sum_probs=42.8
Q ss_pred eEEEEeeecCCCeEEEEEccCCcHHHHHHHHHHHc----CC-C--CCceEEEEecCCccccccccccccccccccCCCCE
Q 002138 198 LQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLF----IS-V--SEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEE 270 (960)
Q Consensus 198 l~l~l~~~~~~~~~~~~~Sk~~Ti~eL~~~v~~lf----~i-~--~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~ 270 (960)
++|++......+...+.|+...|+.+|++++...- .. + ...+||-. .+.+|+| +.||.++++..|..
T Consensus 3 i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~-----~GriL~d-~~tL~~~~~~~~~~ 76 (111)
T PF13881_consen 3 IELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIY-----AGRILED-NKTLSDCRLPSGET 76 (111)
T ss_dssp EEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEE-----TTEEE-S-SSBTGGGT--TTSE
T ss_pred EEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEe-----CCeecCC-cCcHHHhCCCCCCC
Confidence 45665544333378899999999999999998643 11 1 34678773 2336776 47999998887765
No 118
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=35.26 E-value=1.7e+02 Score=25.81 Aligned_cols=44 Identities=11% Similarity=0.069 Sum_probs=34.7
Q ss_pred EEEEeeecC---CCeEEEEEccCCcHHHHHHHHHHHcCCC--CCceEEE
Q 002138 199 QIRLSVSQE---TNSLLVKISLEDNKVDLYKRACNLFISV--SEMLYIW 242 (960)
Q Consensus 199 ~l~l~~~~~---~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~--~e~~RLW 242 (960)
.||++.... ....++.++...|..++.+.+.+.|+++ +.++.||
T Consensus 4 ~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~ 52 (93)
T PF00788_consen 4 VLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLV 52 (93)
T ss_dssp EEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEE
T ss_pred EEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEE
Confidence 456655322 2378999999999999999999999993 5578998
No 119
>cd06535 CIDE_N_CAD CIDE_N domain of CAD nuclease. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and the release of active DFF40/CAD nuclease.
Probab=35.23 E-value=82 Score=27.76 Aligned_cols=58 Identities=12% Similarity=0.127 Sum_probs=39.4
Q ss_pred cCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEeecCccc
Q 002138 217 LEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQVHGFSD 282 (960)
Q Consensus 217 k~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~~g~w~ 282 (960)
-+.++.+|+.++|+.|.++...++|....+.+.. -++--++| .++.++|-+..+-+|.
T Consensus 19 ~A~sL~eL~~K~~~~l~l~~~~~~l~L~eDGTeV--tEeyF~tL------p~nT~lmvL~~gq~W~ 76 (77)
T cd06535 19 AAKNLKELLRKGCRLLQLPCAGSRLCLYEDGTEV--TEEYFPTL------PDNTELVLLTPGQSWQ 76 (77)
T ss_pred EcCCHHHHHHHHHHHhCCCCCCcEEEEecCCcEe--hHHHHhcC------CCCcEEEEEcCCCccC
Confidence 3678999999999999999878899877666532 12222333 3556666555555563
No 120
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=35.07 E-value=1.6e+02 Score=25.55 Aligned_cols=67 Identities=16% Similarity=0.141 Sum_probs=40.0
Q ss_pred EEEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhcccCCccceeeeeeeccceeeecCCCcccc--ccccCCCcEEEE
Q 002138 527 TVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYRSKIFRVLDEPSDLL--GLIRDEDKLVAY 604 (960)
Q Consensus 527 ~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~--~~I~~~d~i~~y 604 (960)
.+++....|. ...+.++...++.+|++.++...+++... .-++ |.++ ++.|.. .+ ..|.++..|..|
T Consensus 3 ~i~vkt~~Gk----~~~~~v~~~~TV~~LK~~I~~~~~~~~~~-qrLi--~~Gk---~L~D~~-tL~~ygi~~~stv~l~ 71 (73)
T cd01791 3 EVVCNDRLGK----KVRVKCNPDDTIGDLKKLIAAQTGTRPEK-IVLK--KWYT---IFKDHI-SLGDYEIHDGMNLELY 71 (73)
T ss_pred EEEEECCCCC----EEEEEeCCCCcHHHHHHHHHHHhCCChHH-EEEE--eCCc---CCCCCC-CHHHcCCCCCCEEEEE
Confidence 4445444443 35568889999999999999988876543 3332 3333 454432 22 235566665544
No 121
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=34.36 E-value=1.4e+02 Score=25.81 Aligned_cols=38 Identities=8% Similarity=-0.037 Sum_probs=32.5
Q ss_pred CCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEe
Q 002138 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDF 244 (960)
Q Consensus 207 ~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~ 244 (960)
++....+.+....+..+|..++++.|+++.+.++|...
T Consensus 9 ~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~ 46 (81)
T smart00666 9 GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQ 46 (81)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEE
Confidence 45677888999999999999999999998777888644
No 122
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=33.22 E-value=22 Score=40.37 Aligned_cols=112 Identities=19% Similarity=0.227 Sum_probs=63.2
Q ss_pred ccccccccccCCCccchHHHHHHHhcChHHHHHHHhccccccccCCCCCCchHHHHHHHHHHHHhcC-CC-C-----Ccc
Q 002138 335 CLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWA-PG-G-----IPV 407 (960)
Q Consensus 335 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~al~~L~~~l~~-~~-~-----~~i 407 (960)
....++|+.|.||-|+.+|..|.+.+..++...+-..-+..+...... ...++..-|+..++..-. .+ . .++
T Consensus 174 ~e~t~~~~i~~~n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~-~~spiS~ifgg~~rs~l~~~~nkeS~tlqPF 252 (420)
T KOG1871|consen 174 DEFTPRGLINNGNLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSF-VRSPISEIFGGQLRSVLYQPSNKESATLQPF 252 (420)
T ss_pred ccccccccccccccccccchhhcccccCchhhhcCCcccCccCCCCCc-ccCcHHHhhccccccceeccccccccccCcc
Confidence 356789999999999999999999999999875533322222221111 112344444433332211 00 0 011
Q ss_pred Ch----------HHHHHHHhhc-----CCCCC--------CCCCCCHHHHHHHHHHHHHHHhh
Q 002138 408 AP----------RMFKLKLANF-----APQFS--------GYNQHDSQEFLAFLLDGLHEDLN 447 (960)
Q Consensus 408 ~P----------~~f~~~l~~~-----~~~F~--------~~~QQDA~EfL~~LLd~L~eel~ 447 (960)
-| .....++..+ .|-+. ...|.++++|..+|+..|+..+-
T Consensus 253 ~tlqldiq~~~i~sv~~ales~~~re~lp~~st~s~~eV~~s~q~~leklp~vlilhlkrF~y 315 (420)
T KOG1871|consen 253 FTLQLDIQSEKIHSVQDALESLVARESLPGYSTKSGQEVEASSQTTLEKLPPVLILHLKRFVY 315 (420)
T ss_pred ceeeeeeeccccCCHHHHhhccChhhcccceecCCCCeechhhhhhHhhcchhhhhhhhHHHH
Confidence 11 1112222221 22222 25799999999999999997763
No 123
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=32.43 E-value=1.1e+02 Score=27.01 Aligned_cols=58 Identities=16% Similarity=0.143 Sum_probs=38.1
Q ss_pred CCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEeecCccc
Q 002138 218 EDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQVHGFSD 282 (960)
Q Consensus 218 ~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~~g~w~ 282 (960)
..++.+|+.++|+.|+++...++|....+.+. .++. .... --..++.+|-+..+-.|.
T Consensus 20 A~sL~eL~~K~~~~l~l~~~~~~lvL~eDGTe---VddE-eYF~---tLp~nT~l~~l~~gq~W~ 77 (78)
T cd01615 20 ASSLEELLSKACEKLKLPSAPVTLVLEEDGTE---VDDE-EYFQ---TLPDNTVLMLLEPGQKWT 77 (78)
T ss_pred cCCHHHHHHHHHHHcCCCCCCeEEEEeCCCcE---EccH-HHHh---cCCCCcEEEEECCCCCcC
Confidence 67899999999999999988899987766552 2222 1111 123455666555555664
No 124
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=32.28 E-value=2.4e+02 Score=24.25 Aligned_cols=38 Identities=11% Similarity=0.142 Sum_probs=31.0
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHHHcCCCC-CceEEEE
Q 002138 206 QETNSLLVKISLEDNKVDLYKRACNLFISVS-EMLYIWD 243 (960)
Q Consensus 206 ~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~-e~~RLW~ 243 (960)
.|+...++.+++..|..++.+.||..++|.. +-+-|..
T Consensus 4 lD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~ 42 (80)
T PF09379_consen 4 LDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQY 42 (80)
T ss_dssp SSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE
T ss_pred cCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEE
Confidence 4667789999999999999999999999984 3344443
No 125
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=32.10 E-value=2.4e+02 Score=25.04 Aligned_cols=51 Identities=24% Similarity=0.257 Sum_probs=39.6
Q ss_pred ceeEEeCCCCchHHHHHHHHhhcccCC-ccceeeeeeeccceeeecCCCccc
Q 002138 541 PFTVTVPKYGRFQDLIDALSTKCFLRN-HEKLLVAEIYRSKIFRVLDEPSDL 591 (960)
Q Consensus 541 ~~~v~v~k~~~~~dl~~~l~~~~~~~~-~~~l~~~e~~~~~~~~~~~~~~~~ 591 (960)
-.++.+.+..+..+++..+.+..++.+ ++...++|+......+.+.+.+.+
T Consensus 17 ~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~e~~~~~~er~L~~~e~P 68 (90)
T smart00314 17 YKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLVEVLPDGKERVLPDDENP 68 (90)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEEEEeCCcEEEEeCCCCcc
Confidence 356889999999999999999999976 578888888755556666643333
No 126
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=31.59 E-value=2.3e+02 Score=29.03 Aligned_cols=50 Identities=10% Similarity=0.134 Sum_probs=39.0
Q ss_pred eeEEEEeeecCCCeEEEEEccCCcHHHHHHHHHHHcCCCC-CceEEEEecCC
Q 002138 197 PLQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVS-EMLYIWDFSGQ 247 (960)
Q Consensus 197 Pl~l~l~~~~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~-e~~RLW~~~~~ 247 (960)
|+.++|.. .|+....+.+....|+.++.+.+|+.++|.. ..+-||.....
T Consensus 3 ~~~~~V~l-~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~ 53 (207)
T smart00295 3 PRVLKVYL-LDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPD 53 (207)
T ss_pred cEEEEEEe-cCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCC
Confidence 45666654 5567788999999999999999999999974 45677765443
No 127
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=31.40 E-value=1.5e+02 Score=25.91 Aligned_cols=40 Identities=23% Similarity=0.392 Sum_probs=29.7
Q ss_pred eEEEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhcccCCcc
Q 002138 526 MTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHE 569 (960)
Q Consensus 526 ~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~ 569 (960)
|.+++-...|.. ..+.++...++.+|++.++...++....
T Consensus 2 m~I~Vk~~~G~~----~~l~v~~~~TV~~LK~~I~~~~~~~~~~ 41 (78)
T cd01804 2 MNLNIHSTTGTR----FDLSVPPDETVEGLKKRISQRLKVPKER 41 (78)
T ss_pred eEEEEEECCCCE----EEEEECCcCHHHHHHHHHHHHhCCChHH
Confidence 445555555542 6788899999999999999988876543
No 128
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=29.85 E-value=69 Score=40.99 Aligned_cols=64 Identities=9% Similarity=0.060 Sum_probs=52.7
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEe
Q 002138 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (960)
Q Consensus 206 ~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (960)
=|....++.|...+||++|++.++...+|+.+..||-. ..-.|.|. +++.++++ .|++|=|-.+
T Consensus 10 ld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~-----~grvl~~~-k~vq~~~v-dgk~~hlver 73 (1143)
T KOG4248|consen 10 LDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIY-----QGRVLQDD-KKVQEYNV-DGKVIHLVER 73 (1143)
T ss_pred cccceeEEEechHHHHHHHHHHHHHhcccccccceeee-----cceeeccc-hhhhhccC-CCeEEEeecc
Confidence 35667899999999999999999999999999999872 22356664 78999998 7888877555
No 129
>cd01779 Myosin_IXb_RA ubitquitin-like domain of Myosin_IXb_RA. Myosin_IXb_RA RasGTP binding domain from guanine nucleotide exchange factors. In some proteins the domain acts as a RasGTP effector (AF6, canoe and RalGDS, for example), but in other cases it may not bind to RasGTP at all.
Probab=29.55 E-value=2.5e+02 Score=25.73 Aligned_cols=58 Identities=17% Similarity=0.082 Sum_probs=44.1
Q ss_pred EEEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhcccCCccceeeeeeeccceeee
Q 002138 527 TVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYRSKIFRV 584 (960)
Q Consensus 527 ~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~e~~~~~~~~~ 584 (960)
.+-+.|.-....++-+.|+..|+.+..+++.-+-...++......+++||....=-.+
T Consensus 12 ~l~IyP~~~a~~~~~C~v~a~k~sTAa~VI~~~i~~L~Ld~tk~YvLaEVkEsGgEEw 69 (105)
T cd01779 12 HLHIYPQLIAESTISCRVTATKDSTAADVIDDVIASLQLDGTKCYVLAEVKESGGEEW 69 (105)
T ss_pred EEEEccCCCCCCceEeEeEeccCCcHHHHHHHHHHHhCcCccccEEEEEeeccCCeee
Confidence 3444454444455666789999999999999999999999899999999977644333
No 130
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=28.80 E-value=1.4e+02 Score=26.24 Aligned_cols=31 Identities=10% Similarity=0.090 Sum_probs=26.9
Q ss_pred CCcHHHHHHHHHHHcCCCCCceEEEEecCCc
Q 002138 218 EDNKVDLYKRACNLFISVSEMLYIWDFSGQT 248 (960)
Q Consensus 218 ~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~ 248 (960)
..++.+|+.++|+.|.++...++|....+.+
T Consensus 18 A~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT 48 (74)
T smart00266 18 ASSLEELLSKVCDKLALPDSPVTLVLEEDGT 48 (74)
T ss_pred cCCHHHHHHHHHHHhCCCCCCcEEEEecCCc
Confidence 6789999999999999998889998766554
No 131
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=28.31 E-value=2e+02 Score=25.40 Aligned_cols=40 Identities=13% Similarity=0.107 Sum_probs=33.9
Q ss_pred CCeEEEEEccCCcHHHHHHHHHHHcCCC--CCceEEEEecCC
Q 002138 208 TNSLLVKISLEDNKVDLYKRACNLFISV--SEMLYIWDFSGQ 247 (960)
Q Consensus 208 ~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~--~e~~RLW~~~~~ 247 (960)
+...++.+++.+|..++...+.+.|+++ +.++.|+.....
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~~ 53 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLGD 53 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEECC
Confidence 5668999999999999999999999998 457888876543
No 132
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=26.90 E-value=2.7e+02 Score=28.27 Aligned_cols=54 Identities=26% Similarity=0.384 Sum_probs=41.5
Q ss_pred EEEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhcccCCccceeeeeeeccc
Q 002138 527 TVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYRSK 580 (960)
Q Consensus 527 ~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~e~~~~~ 580 (960)
.|.+-..+|...|....+.+|...++.+|...+....++.....+++.-..+..
T Consensus 2 ~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~ 55 (162)
T PF13019_consen 2 NVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQ 55 (162)
T ss_pred eEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCe
Confidence 466667788888888999999999999999999999988766554444433333
No 133
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=26.39 E-value=99 Score=30.87 Aligned_cols=61 Identities=8% Similarity=0.073 Sum_probs=50.5
Q ss_pred eEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEe
Q 002138 210 SLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (960)
Q Consensus 210 ~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (960)
.++..+...+||..++..+...-+||+++.|+-+ ....|.|. .+|.|.+|+...++-+-++
T Consensus 12 ti~~eve~~~ti~~~Kakiq~~egIp~dqqrlif-----ag~qLedg-rtlSDY~Iqkestl~l~l~ 72 (156)
T KOG0004|consen 12 TITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIF-----AGKQLEDG-RTLSDYNIQKESTLHLVLR 72 (156)
T ss_pred ceeeeecccccHHHHHHhhhcccCCCchhhhhhh-----hhcccccC-CccccccccccceEEEEEE
Confidence 4677889999999999999999999999998874 33457675 7999999988887776665
No 134
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=26.25 E-value=3.1e+02 Score=24.08 Aligned_cols=61 Identities=21% Similarity=0.201 Sum_probs=42.5
Q ss_pred EEEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhccc-CCccceeeeee-eccceeeecCC
Q 002138 527 TVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFL-RNHEKLLVAEI-YRSKIFRVLDE 587 (960)
Q Consensus 527 ~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~-~~~~~l~~~e~-~~~~~~~~~~~ 587 (960)
.+.|+..++.....-.++.+++..++.+++..+.+.+++ .++....+++. ..+..-+.+.+
T Consensus 4 ~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~~~~~~er~L~~ 66 (93)
T PF00788_consen 4 VLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLVEVEESGGEERPLDD 66 (93)
T ss_dssp EEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEEEEECTTTEEEEETT
T ss_pred EEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEEEEEcCCCEEEEcCC
Confidence 345666666655555678999999999999999999999 55566666533 33455555553
No 135
>PF00770 Peptidase_C5: Adenovirus endoprotease; InterPro: IPR000855 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine aminopeptidases belong to the peptidase family C5 (adenain family, clan CE). Several adenovirus proteins are synthesised as precursors, requiring processing by a protease before the virion is assembled [, ]. Until recently, the adenovirus endopeptidase was classified as a serine protease, having been reported to be inhibited by serine protease inhibitors [, ]. However, it has since been shown to be inhibited by cysteine protease inhibitors, and the catalytic residues are believed to be His-54 and Cys-104 [, ].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1NLN_A 1AVP_A.
Probab=25.76 E-value=86 Score=31.80 Aligned_cols=31 Identities=35% Similarity=0.498 Sum_probs=21.6
Q ss_pred EEEEEeec-CCCCCeEEEEEeccccchhhhhhhhhccccccccCCCcEEEEc
Q 002138 881 YAISNHYG-GMGGGHYTAFVDIDYHSAFKQYEYLKTQITSVQLGHKRWFEFD 931 (960)
Q Consensus 881 ~AVinH~G-~l~gGHYtAy~k~~~~~~~~~~~~~~~~~~~~~~~~~~Wy~fd 931 (960)
.||||--| ..||=|+.|++-+ ....+.|.||
T Consensus 21 cAIVNT~~retGGvHWlA~Aw~--------------------P~s~t~YmFD 52 (183)
T PF00770_consen 21 CAIVNTGGRETGGVHWLAFAWD--------------------PRSRTFYMFD 52 (183)
T ss_dssp EEEEESS-TTT--S-EEEEEEE--------------------TTTTEEEEE-
T ss_pred eEEEecCCcccCceeEEEEEec--------------------CCcceEEEeC
Confidence 68999888 6788899999999 4567778776
No 136
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=25.51 E-value=1.4e+02 Score=32.39 Aligned_cols=49 Identities=8% Similarity=0.093 Sum_probs=33.6
Q ss_pred eEEEEeee--cCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecC
Q 002138 198 LQIRLSVS--QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSG 246 (960)
Q Consensus 198 l~l~l~~~--~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~ 246 (960)
+.++++.. ++...+++.+|+..|..+|-++|-+.++++++.+|+|..+.
T Consensus 177 v~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~~~~~ 227 (249)
T PF12436_consen 177 VEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFFTVNP 227 (249)
T ss_dssp EEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE---T
T ss_pred EEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEEecc
Confidence 45555552 33458899999999999999999999999999999998754
No 137
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=25.25 E-value=82 Score=34.23 Aligned_cols=64 Identities=11% Similarity=0.011 Sum_probs=42.7
Q ss_pred EEEEccCCcHHHHHHHHHHHcCCCC-CceEEEEecCCccccccccccccccccccCCCCEEEEEEe
Q 002138 212 LVKISLEDNKVDLYKRACNLFISVS-EMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (960)
Q Consensus 212 ~~~~Sk~~Ti~eL~~~v~~lf~i~~-e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (960)
.+.+++.+++.++...++++.|+|+ +++.+|.=-..+....+ +.+.|+..+.|..|..|..+..
T Consensus 88 h~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i-~~~~t~~~~el~~GdIi~fQ~~ 152 (249)
T PF12436_consen 88 HVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPI-DPNQTFEKAELQDGDIICFQRA 152 (249)
T ss_dssp EEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE---SSSBHHHTT--TTEEEEEEE-
T ss_pred EEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEc-CCCCchhhcccCCCCEEEEEec
Confidence 4678999999999999999999986 47888854333333445 5678999999999998888643
No 138
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=24.73 E-value=2.7e+02 Score=24.44 Aligned_cols=63 Identities=6% Similarity=0.029 Sum_probs=50.0
Q ss_pred CeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEE
Q 002138 209 NSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFL 273 (960)
Q Consensus 209 ~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Ill 273 (960)
...++.+...++|..+++++....+.+- ..||-.-.......+|.+. .+|.+.|+-.+-.|.+
T Consensus 11 ~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~-~sLA~yGiFs~~~i~l 73 (80)
T cd01811 11 SDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSR-KSLADYGIFSKTNICL 73 (80)
T ss_pred CceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCccccccccc-ccHhhhcceeccEEEE
Confidence 4578899999999999999999999987 6788765555556677765 7899999877766654
No 139
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=24.18 E-value=4.9e+02 Score=22.84 Aligned_cols=67 Identities=16% Similarity=0.141 Sum_probs=47.5
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEE
Q 002138 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQL 275 (960)
Q Consensus 206 ~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~ 275 (960)
++++...+.+-...|+.+-..++.+.-++.++.+.++...+.......-+.+ .|++.-.|.++.+|+
T Consensus 7 PnqQrT~V~vrpG~tl~daL~KaLk~R~l~pe~C~V~~~~~~~~~~~~i~W~---td~~~L~geEL~V~~ 73 (74)
T cd01816 7 PNKQRTVVNVRPGMTLRDALAKALKVRGLQPECCAVFRLGDGSSKKLRIDWD---TDISSLIGEELQVEV 73 (74)
T ss_pred CCCCeEEEEecCCcCHHHHHHHHHHHcCCChhHeEEEEcCCCcccccccchh---hhhhhccCceEEEEe
Confidence 6667788999999999999999999999999999999764332211222222 134445577777764
No 140
>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins.
Probab=23.93 E-value=67 Score=27.29 Aligned_cols=34 Identities=21% Similarity=0.422 Sum_probs=22.2
Q ss_pred CCCccccCcceeEEEEEee--eCCCeEEEEEEeeEe
Q 002138 809 WYCPRCKKHWQASKKLDLW--RSPDILVIHLKRFSF 842 (960)
Q Consensus 809 wyC~~Ck~~~~AtKk~~l~--~lP~iLiIhLKRF~~ 842 (960)
|.||+|+...-..+++..- -+-.++=|+.+||..
T Consensus 1 y~C~KCg~~~~e~~~v~~tgg~~skiFdvq~~~f~~ 36 (64)
T PF09855_consen 1 YKCPKCGNEEYESGEVRATGGGLSKIFDVQNKKFTT 36 (64)
T ss_pred CCCCCCCCcceecceEEccCCeeEEEEEecCcEEEE
Confidence 7899999865544444432 234567788888864
No 141
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=22.07 E-value=2.1e+02 Score=25.38 Aligned_cols=31 Identities=10% Similarity=0.090 Sum_probs=26.5
Q ss_pred CCcHHHHHHHHHHHcCCCCCceEEEEecCCc
Q 002138 218 EDNKVDLYKRACNLFISVSEMLYIWDFSGQT 248 (960)
Q Consensus 218 ~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~ 248 (960)
+.++.||+.++|+.|+++...++|-...+.+
T Consensus 20 A~sL~EL~~K~~~~l~~~~~~~~lvL~eDGT 50 (78)
T cd06539 20 ASSLQELISKTLDALVITSGLVTLVLEEDGT 50 (78)
T ss_pred ecCHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence 6789999999999999998788888766555
No 142
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.64 E-value=2.2e+02 Score=31.93 Aligned_cols=109 Identities=12% Similarity=0.045 Sum_probs=68.6
Q ss_pred HHHHHHHcCCCCce-------eeccCCCCCCCCceeeeeE-EEEeeecCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCc
Q 002138 167 WLRALKWHNDSKAA-------VKDFGSSFAADEQDVFPLQ-IRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEM 238 (960)
Q Consensus 167 w~~l~~wYGg~p~i-------vi~~g~~~~~~~vEvyPl~-l~l~~~~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~ 238 (960)
=+++++.|-.+.+. ...+|...+-..+...|-. +++.-..+.......|+-.-|+-++++.+-..-|+...+
T Consensus 298 Er~fVRyym~qke~p~ky~el~~~Hg~l~~Lv~~~l~pdkrvk~l~~~~~v~~s~~I~~~~TV~D~~~~Ld~~VGvk~tr 377 (418)
T KOG2982|consen 298 ERRFVRYYMSQKELPDKYGELELLHGRLYELVKLHLIPDKRVKALNSGPKVIASGLICMTRTVLDFMKILDPKVGVKFTR 377 (418)
T ss_pred HHHHHHHHhhhhhcchhhhhHHHHccchhhhhhcccCchheeeeeccCCccccceEEEeehHHHHHHHHhccccccccce
Confidence 35677777753222 1112322222334444432 333223334455677888999999999999999999999
Q ss_pred eEEEEecCCcc--ccccccccccccccccCCCCEEEEEE
Q 002138 239 LYIWDFSGQTT--QFLMNDRVTMSDDFSAKPGEEVFLQL 275 (960)
Q Consensus 239 ~RLW~~~~~~~--~~lL~d~~~tL~d~~l~~~q~IllE~ 275 (960)
+||+...+..+ ...-.+.++-|.-.+++.|..+++..
T Consensus 378 MkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvqe 416 (418)
T KOG2982|consen 378 MKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQE 416 (418)
T ss_pred eEEEEEcccCccCCccccCCCCcceEEeccCCCEeeeec
Confidence 99997643221 11122667788888999999999854
No 143
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=21.50 E-value=4.4e+02 Score=23.32 Aligned_cols=39 Identities=10% Similarity=0.079 Sum_probs=33.0
Q ss_pred CCCeEEEEEccCCcHHHHHHHHHHHcCCCC--CceEEEEec
Q 002138 207 ETNSLLVKISLEDNKVDLYKRACNLFISVS--EMLYIWDFS 245 (960)
Q Consensus 207 ~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~--e~~RLW~~~ 245 (960)
+....++.+++..|..++...+.+.|+++. +++.|+...
T Consensus 14 ~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~e~~ 54 (90)
T smart00314 14 GGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLVEVL 54 (90)
T ss_pred CCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEEEEe
Confidence 356789999999999999999999999985 467777654
No 144
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=21.50 E-value=41 Score=27.39 Aligned_cols=12 Identities=42% Similarity=0.974 Sum_probs=9.6
Q ss_pred CCCCCccccCcc
Q 002138 807 DMWYCPRCKKHW 818 (960)
Q Consensus 807 d~wyC~~Ck~~~ 818 (960)
=+.|||+||+..
T Consensus 27 fPlyCpKCK~Et 38 (55)
T PF14205_consen 27 FPLYCPKCKQET 38 (55)
T ss_pred ccccCCCCCceE
Confidence 368999999864
No 145
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=20.00 E-value=2e+02 Score=24.29 Aligned_cols=40 Identities=8% Similarity=0.198 Sum_probs=30.0
Q ss_pred EEEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhcccCCccc
Q 002138 527 TVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEK 570 (960)
Q Consensus 527 ~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~ 570 (960)
.+++-..+|.. ..+.+....++.++++.++...+++....
T Consensus 2 ~i~v~~~~g~~----~~~~v~~~~tv~~lK~~i~~~~g~~~~~q 41 (76)
T cd01806 2 LIKVKTLTGKE----IEIDIEPTDKVERIKERVEEKEGIPPQQQ 41 (76)
T ss_pred EEEEEeCCCCE----EEEEECCCCCHHHHHHHHhHhhCCChhhE
Confidence 45555556643 45778899999999999999999876543
Done!