Query 002138
Match_columns 960
No_of_seqs 476 out of 2055
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 13:58:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002138.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002138hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y6e_A Ubiquitin carboxyl-term 100.0 1.5E-77 5E-82 683.8 35.1 356 335-958 4-360 (367)
2 2gfo_A Ubiquitin carboxyl-term 100.0 8.7E-74 3E-78 658.7 30.0 338 335-957 58-396 (396)
3 3nhe_A Ubiquitin carboxyl-term 100.0 1.3E-69 4.5E-74 612.2 33.8 338 335-958 5-344 (348)
4 3i3t_A Ubiquitin carboxyl-term 100.0 1.5E-68 5.2E-73 605.2 27.7 334 338-958 2-352 (355)
5 1nb8_A Ubiquitin carboxyl-term 100.0 4.3E-63 1.5E-67 561.4 28.1 297 336-958 3-316 (353)
6 2ayn_A Ubiquitin carboxyl-term 100.0 2.9E-62 9.8E-67 564.5 22.1 318 336-957 11-394 (404)
7 3mhs_A Ubiquitin carboxyl-term 100.0 2E-60 6.7E-65 561.0 28.0 315 335-957 137-474 (476)
8 2f1z_A Ubiquitin carboxyl-term 100.0 8.9E-60 3E-64 561.0 27.6 298 335-958 171-485 (522)
9 1vjv_A Ubiquitin carboxyl-term 100.0 2.3E-59 7.9E-64 542.4 26.0 299 334-957 19-414 (415)
10 3ihp_A Ubiquitin carboxyl-term 100.0 9E-58 3.1E-62 566.4 27.4 156 333-521 338-513 (854)
11 3jyu_A Ubiquitin carboxyl-term 100.0 5.4E-37 1.9E-41 324.5 18.2 186 91-284 30-229 (231)
12 4a3p_A Ubiquitin carboxyl-term 100.0 1.5E-36 5.3E-41 318.3 17.8 183 91-284 21-217 (217)
13 2vhf_A Ubiquitin carboxyl-term 99.9 2.5E-26 8.6E-31 252.0 12.6 101 336-443 6-112 (374)
14 1w6v_A Ubiquitin carboxyl-term 99.8 2.1E-19 7.3E-24 174.7 10.2 82 91-180 45-134 (141)
15 2ylm_A Ubiquitin carboxyl-term 99.3 1.6E-11 5.4E-16 144.8 17.5 296 212-665 150-475 (530)
16 3phx_B Ubiquitin-like protein 96.5 0.014 4.9E-07 49.9 10.0 65 206-276 12-76 (79)
17 4dbg_A Ranbp-type and C3HC4-ty 96.5 0.01 3.6E-07 53.9 9.0 77 192-274 14-97 (105)
18 1v5o_A 1700011N24RIK protein; 96.4 0.0073 2.5E-07 54.8 7.7 64 209-277 22-85 (102)
19 2kjr_A CG11242; UBL, ubiquitin 96.4 0.014 4.6E-07 52.3 9.1 65 210-274 29-93 (95)
20 3plu_A Ubiquitin-like modifier 96.4 0.018 6E-07 51.1 9.5 72 196-273 18-90 (93)
21 1wjn_A Tubulin-folding protein 96.3 0.021 7.2E-07 51.2 10.1 69 207-275 21-91 (97)
22 4b6w_A Tubulin-specific chaper 96.3 0.022 7.6E-07 49.9 9.7 65 208-273 14-80 (86)
23 4ajy_B Transcription elongatio 96.2 0.018 6.1E-07 53.3 9.2 72 206-283 9-87 (118)
24 3mtn_B UBA80, ubcep1, ubiquiti 96.2 0.021 7E-07 49.4 9.3 65 206-276 11-75 (85)
25 3v6c_B Ubiquitin; structural g 96.2 0.019 6.4E-07 50.8 9.1 65 206-276 25-89 (91)
26 3n3k_B Ubiquitin; hydrolase, p 96.2 0.016 5.6E-07 50.1 8.4 66 206-277 11-76 (85)
27 4fbj_B NEDD8; effector-HOST ta 96.1 0.015 5.2E-07 51.1 8.1 68 206-279 8-75 (88)
28 3a9j_A Ubiquitin; protein comp 96.1 0.023 7.9E-07 47.9 9.0 66 206-277 8-73 (76)
29 3dbh_I NEDD8; cell cycle, acti 96.1 0.016 5.4E-07 50.6 8.1 65 206-276 20-84 (88)
30 2kan_A Uncharacterized protein 96.1 0.023 7.8E-07 50.7 9.2 63 210-277 26-88 (94)
31 1sif_A Ubiquitin; hydrophobic 96.1 0.018 6E-07 50.7 8.2 66 206-277 17-82 (88)
32 2bwf_A Ubiquitin-like protein 96.0 0.036 1.2E-06 46.9 9.8 62 207-274 12-73 (77)
33 3k9o_B Ubiquitin, UBB+1; E2-25 96.0 0.024 8.4E-07 50.4 9.0 68 206-279 9-76 (96)
34 4hcn_B Polyubiquitin, ubiquiti 96.0 0.022 7.5E-07 51.2 8.6 66 206-277 30-95 (98)
35 2kj6_A Tubulin folding cofacto 96.0 0.03 1E-06 50.3 9.3 65 209-273 27-92 (97)
36 1wy8_A NP95-like ring finger p 95.9 0.042 1.4E-06 48.1 9.9 65 209-279 19-84 (89)
37 2fnj_B Transcription elongatio 95.9 0.025 8.5E-07 52.5 8.5 71 208-284 11-88 (118)
38 2hj8_A Interferon-induced 17 k 95.9 0.028 9.7E-07 49.3 8.7 65 207-277 13-77 (88)
39 1ndd_A NEDD8, protein (ubiquit 95.8 0.034 1.2E-06 46.8 8.8 66 206-277 8-73 (76)
40 1wh3_A 59 kDa 2'-5'-oligoadeny 95.8 0.026 8.8E-07 49.2 8.2 65 207-277 16-80 (87)
41 4dwf_A HLA-B-associated transc 95.8 0.043 1.5E-06 48.2 9.6 64 206-276 13-76 (90)
42 4eew_A Large proline-rich prot 95.8 0.043 1.5E-06 48.0 9.4 62 206-274 25-86 (88)
43 1wxv_A BAG-family molecular ch 95.8 0.029 1E-06 49.6 8.3 63 207-274 15-82 (92)
44 2kd0_A LRR repeats and ubiquit 95.7 0.035 1.2E-06 48.5 8.5 63 206-274 19-81 (85)
45 3vdz_A Ubiquitin-40S ribosomal 95.6 0.055 1.9E-06 49.8 9.9 66 206-277 43-108 (111)
46 1we6_A Splicing factor, putati 95.6 0.039 1.3E-06 50.7 8.8 66 207-278 39-105 (111)
47 1yx5_B Ubiquitin; proteasome, 95.5 0.058 2E-06 48.2 9.2 67 206-278 8-74 (98)
48 2dzi_A Ubiquitin-like protein 95.4 0.055 1.9E-06 46.2 8.7 64 206-275 15-78 (81)
49 2kk8_A Uncharacterized protein 95.4 0.044 1.5E-06 47.7 8.0 63 207-275 19-82 (84)
50 2daf_A FLJ35834 protein; hypot 95.4 0.059 2E-06 49.6 9.1 77 195-277 13-89 (118)
51 2l7r_A Ubiquitin-like protein 95.4 0.031 1.1E-06 49.6 7.2 63 208-276 27-89 (93)
52 2faz_A Ubiquitin-like containi 95.4 0.087 3E-06 44.7 9.8 64 207-276 11-76 (78)
53 2klc_A Ubiquilin-1; ubiquitin- 95.4 0.072 2.5E-06 48.1 9.6 63 208-276 34-96 (101)
54 2wyq_A HHR23A, UV excision rep 95.4 0.079 2.7E-06 45.8 9.6 65 206-276 13-80 (85)
55 2uyz_B Small ubiquitin-related 95.4 0.056 1.9E-06 46.1 8.5 65 206-276 11-75 (79)
56 2kdi_A Ubiquitin, vacuolar pro 95.4 0.06 2E-06 49.8 9.1 70 206-281 17-86 (114)
57 1j8c_A Ubiquitin-like protein 95.3 0.064 2.2E-06 50.5 9.4 65 208-278 41-105 (125)
58 1v6e_A Cytoskeleton-associated 95.3 0.059 2E-06 48.1 8.7 64 210-273 20-84 (95)
59 1wju_A NEDD8 ultimate buster-1 95.3 0.038 1.3E-06 49.8 7.3 60 208-273 29-88 (100)
60 1wx7_A Ubiquilin 3; ubiquitin- 95.3 0.064 2.2E-06 48.8 9.1 62 210-277 28-89 (106)
61 1yqb_A Ubiquilin 3; structural 95.2 0.076 2.6E-06 47.9 9.2 61 210-276 33-93 (100)
62 1we7_A SF3A1 protein; structur 95.2 0.063 2.2E-06 49.6 8.9 64 209-278 46-109 (115)
63 2ojr_A Ubiquitin; lanthide-bin 95.2 0.086 2.9E-06 48.4 9.7 66 206-277 43-108 (111)
64 1wgg_A Ubiquitin carboxyl-term 95.1 0.043 1.5E-06 49.1 7.2 60 207-273 15-75 (96)
65 3m63_B Ubiquitin domain-contai 95.1 0.018 6.1E-07 52.1 4.7 61 207-273 36-96 (101)
66 3shq_A UBLCP1; phosphatase, hy 95.1 0.035 1.2E-06 60.9 8.0 64 207-273 13-76 (320)
67 1t0y_A Tubulin folding cofacto 95.1 0.094 3.2E-06 49.1 9.8 65 210-274 19-84 (122)
68 3m62_B UV excision repair prot 95.0 0.046 1.6E-06 49.9 7.1 64 207-276 10-73 (106)
69 1uel_A HHR23B, UV excision rep 94.8 0.18 6E-06 44.8 10.1 65 206-276 8-75 (95)
70 1wx8_A Riken cDNA 4931431F19; 94.7 0.054 1.8E-06 48.2 6.7 63 208-276 26-88 (96)
71 1v86_A DNA segment, CHR 7, way 94.7 0.037 1.3E-06 49.4 5.5 60 207-273 25-84 (95)
72 1wyw_B Ubiquitin-like protein 94.7 0.11 3.7E-06 46.5 8.6 65 206-276 29-93 (97)
73 1v5t_A 8430435I17RIK protein; 94.6 0.039 1.3E-06 48.7 5.4 63 207-273 15-79 (90)
74 2dzm_A FAS-associated factor 1 94.4 0.08 2.7E-06 47.7 7.0 63 207-274 17-79 (100)
75 1uh6_A Ubiquitin-like 5; beta- 94.4 0.086 3E-06 47.4 7.1 63 206-274 36-98 (100)
76 3q3f_A Ribonuclease/ubiquitin 94.2 0.093 3.2E-06 52.9 7.8 77 194-277 102-178 (189)
77 1wgd_A Homocysteine-responsive 94.2 0.14 4.7E-06 45.3 8.1 62 210-277 21-86 (93)
78 1ttn_A DC-UBP, dendritic cell- 94.1 0.13 4.4E-06 46.8 7.8 64 207-276 32-95 (106)
79 3u30_A Ubiquitin, linear DI-ub 94.0 0.17 5.7E-06 50.2 9.2 67 206-278 28-94 (172)
80 4a20_A Ubiquitin-like protein 94.0 0.18 6.3E-06 45.2 8.5 63 207-275 28-94 (98)
81 2io1_B Small ubiquitin-related 94.0 0.31 1.1E-05 43.3 9.9 76 198-280 8-84 (94)
82 3l0w_B Monoubiquitinated proli 93.9 0.19 6.4E-06 49.8 9.3 68 206-279 8-75 (169)
83 3rt3_B Ubiquitin-like protein 93.9 0.23 7.9E-06 48.4 9.9 66 206-277 89-154 (159)
84 2io0_B Small ubiquitin-related 93.9 0.33 1.1E-05 42.8 9.9 72 198-276 6-77 (91)
85 2lxa_A Ubiquitin-like protein 93.4 0.12 3.9E-06 45.4 5.9 63 207-275 10-76 (87)
86 3qx1_A FAS-associated factor 1 93.3 0.45 1.5E-05 41.2 9.5 70 205-276 14-83 (84)
87 3rt3_B Ubiquitin-like protein 92.9 0.36 1.2E-05 47.0 9.3 66 206-276 10-76 (159)
88 2kzr_A Ubiquitin thioesterase 92.6 0.15 5.1E-06 44.4 5.5 63 211-274 12-75 (86)
89 3b08_A Polyubiquitin-C, ubiqui 92.5 0.45 1.5E-05 45.6 9.4 66 206-277 84-149 (152)
90 3b08_A Polyubiquitin-C, ubiqui 92.1 0.47 1.6E-05 45.5 9.0 66 206-277 8-73 (152)
91 1wm3_A Ubiquitin-like protein 91.9 0.72 2.5E-05 38.6 8.6 69 198-273 2-70 (72)
92 1v2y_A 3300001G02RIK protein; 91.5 0.26 9E-06 44.7 5.8 74 198-277 8-96 (105)
93 1wf9_A NPL4 family protein; be 91.3 0.28 9.6E-06 44.6 5.9 66 210-276 18-94 (107)
94 1x1m_A Ubiquitin-like protein 91.3 0.51 1.7E-05 42.8 7.7 62 209-276 26-99 (107)
95 1wia_A Hypothetical ubiquitin- 91.0 0.63 2.1E-05 41.1 7.8 63 206-276 15-77 (95)
96 3u30_A Ubiquitin, linear DI-ub 90.9 0.45 1.5E-05 47.0 7.5 65 206-276 104-168 (172)
97 2pjh_A Protein NPL4, nuclear p 90.7 0.2 6.8E-06 43.2 4.0 65 209-274 14-78 (80)
98 3b1l_X E3 ubiquitin-protein li 90.1 0.047 1.6E-06 46.1 0.0 64 207-276 9-72 (76)
99 3u5e_m 60S ribosomal protein L 90.5 0.049 1.7E-06 51.4 0.0 65 207-277 9-73 (128)
100 3a4r_A Nfatc2-interacting prot 90.1 1.1 3.9E-05 38.2 8.4 69 198-273 8-77 (79)
101 2eke_C Ubiquitin-like protein 90.0 1.9 6.4E-05 39.1 10.0 69 198-274 32-100 (106)
102 2d07_B Ubiquitin-like protein 90.0 1.6 5.3E-05 38.6 9.3 71 198-275 18-88 (93)
103 2kdb_A Homocysteine-responsive 89.9 0.71 2.4E-05 41.4 7.1 58 210-273 37-98 (99)
104 3ai5_A Yeast enhanced green fl 89.1 1.1 3.7E-05 48.6 9.1 64 207-276 242-305 (307)
105 3u5c_f 40S ribosomal protein S 88.7 0.081 2.8E-06 51.5 0.0 64 207-276 9-72 (152)
106 3kyd_D Small ubiquitin-related 88.7 2.3 7.8E-05 39.1 9.7 70 197-273 40-109 (115)
107 2dzk_A UBX domain-containing p 88.7 2.1 7.3E-05 38.9 9.6 72 198-275 16-89 (109)
108 1wz0_A Ubiquitin-like protein 88.4 1.3 4.6E-05 40.0 7.9 69 198-273 25-93 (104)
109 1wj4_A KIAA0794 protein; UBX d 88.0 1.1 3.8E-05 41.8 7.3 68 205-276 50-119 (124)
110 1wgh_A Ubiquitin-like 3, HCG-1 87.8 3.6 0.00012 37.9 10.4 69 198-273 17-93 (116)
111 2dzj_A Synaptic glycoprotein S 86.8 1.6 5.6E-05 38.0 7.3 59 211-273 25-85 (88)
112 2gow_A HCG-1 protein, ubiquiti 86.7 1.9 6.4E-05 40.4 8.0 61 207-273 26-94 (125)
113 2cr5_A Reproduction 8; UBX dom 86.0 3.8 0.00013 37.2 9.6 71 205-278 30-100 (109)
114 2k8h_A Small ubiquitin protein 85.2 1.8 6.1E-05 39.5 6.9 70 198-274 27-96 (110)
115 1oqy_A HHR23A, UV excision rep 82.9 1.7 5.8E-05 48.4 6.8 67 207-279 16-86 (368)
116 3pge_A SUMO-modified prolifera 79.6 5.8 0.0002 40.1 8.8 71 198-276 30-100 (200)
117 1se9_A Ubiquitin family; ubiqu 79.6 6.6 0.00022 36.7 8.5 57 207-269 25-89 (126)
118 3tix_A Ubiquitin-like protein 78.1 5.8 0.0002 39.6 7.9 68 198-273 58-125 (207)
119 2jxx_A Nfatc2-interacting prot 77.4 10 0.00034 33.7 8.6 68 198-272 26-94 (97)
120 1s3s_G P47 protein; AAA ATPase 75.6 6 0.00021 37.0 7.1 69 198-273 55-124 (127)
121 1wgr_A Growth factor receptor- 64.0 16 0.00054 32.6 6.8 67 524-594 8-75 (100)
122 2kvr_A Ubiquitin carboxyl-term 63.1 7.6 0.00026 36.5 4.8 37 210-246 57-93 (130)
123 3goe_A DNA repair protein RAD6 59.7 63 0.0022 27.4 9.1 62 205-272 16-78 (82)
124 2kc2_A Talin-1, F1; FERM, adhe 58.8 17 0.00057 34.0 6.3 32 205-236 18-49 (128)
125 2bps_A YUKD protein; ubiquitin 55.5 21 0.00073 30.5 5.8 66 206-273 14-80 (81)
126 2al3_A TUG long isoform; TUG U 52.2 31 0.001 30.1 6.3 64 205-274 16-79 (90)
127 2xzm_9 RPS31E; ribosome, trans 48.6 3.7 0.00013 41.1 0.0 59 208-277 10-68 (189)
128 2daj_A KIAA0977 protein, COBL- 48.6 37 0.0013 29.2 6.1 65 199-266 10-75 (91)
129 2l76_A Nfatc2-interacting prot 48.5 53 0.0018 28.9 7.3 66 198-271 22-87 (95)
130 4efo_A Serine/threonine-protei 48.1 28 0.00097 30.6 5.6 41 202-242 17-57 (94)
131 3v7o_A Minor nucleoprotein VP3 43.8 4.9 0.00017 40.7 0.0 68 198-273 22-89 (227)
132 3mtn_B UBA80, ubcep1, ubiquiti 43.0 97 0.0033 25.6 8.3 43 526-572 4-46 (85)
133 4b6w_A Tubulin-specific chaper 41.7 81 0.0028 26.9 7.5 62 542-603 17-80 (86)
134 1v5o_A 1700011N24RIK protein; 40.5 68 0.0023 28.2 7.1 56 541-602 23-80 (102)
135 3ivf_A Talin-1; FERM domain, c 40.4 74 0.0025 34.9 9.1 73 198-273 4-81 (371)
136 3mp2_A Non-structural protein 40.4 34 0.0012 34.6 5.6 71 336-439 10-80 (211)
137 1v6e_A Cytoskeleton-associated 40.2 1.8E+02 0.006 25.0 9.8 34 540-573 19-52 (95)
138 3plu_A Ubiquitin-like modifier 38.1 1.2E+02 0.004 26.6 8.0 58 541-604 33-91 (93)
139 1qmy_A Protease, leader protea 37.8 13 0.00045 34.9 1.9 20 339-358 13-32 (167)
140 1wju_A NEDD8 ultimate buster-1 36.8 1.6E+02 0.0053 26.1 8.7 61 539-606 29-91 (100)
141 1t0y_A Tubulin folding cofacto 36.5 1.4E+02 0.0046 27.2 8.8 34 540-573 18-51 (122)
142 3uf8_A Ubiquitin-like protein 36.0 88 0.003 31.5 8.0 71 198-276 22-92 (209)
143 2v1y_A Phosphatidylinositol-4, 35.9 1.4E+02 0.0047 26.9 8.2 71 203-273 24-102 (108)
144 3k9o_B Ubiquitin, UBB+1; E2-25 33.8 1.3E+02 0.0045 25.5 7.9 42 526-571 2-43 (96)
145 2eel_A Cell death activator CI 31.3 1.1E+02 0.0038 26.6 6.6 60 218-284 27-86 (91)
146 2l05_A Serine/threonine-protei 30.9 2.6E+02 0.0089 24.4 8.8 73 199-277 19-91 (95)
147 1wxm_A A-RAF proto-oncogene se 30.3 2.6E+02 0.009 24.0 9.3 73 199-277 9-81 (86)
148 1oey_A P67-PHOX, neutrophil cy 29.9 92 0.0031 26.7 5.7 45 198-245 6-50 (83)
149 2kj6_A Tubulin folding cofacto 29.4 1.9E+02 0.0064 25.3 8.0 34 540-573 27-60 (97)
150 1wjn_A Tubulin-folding protein 29.4 1.2E+02 0.0041 26.2 6.8 62 542-603 25-89 (97)
151 3v6c_B Ubiquitin; structural g 29.3 1.1E+02 0.0037 26.0 6.4 46 523-572 15-60 (91)
152 2dzi_A Ubiquitin-like protein 28.9 1.2E+02 0.0042 24.7 6.6 45 524-572 6-50 (81)
153 4hcn_B Polyubiquitin, ubiquiti 28.8 77 0.0026 27.5 5.4 48 521-572 18-65 (98)
154 1uh6_A Ubiquitin-like 5; beta- 28.8 1.4E+02 0.0046 26.5 6.9 43 526-572 29-71 (100)
155 4eew_A Large proline-rich prot 28.1 82 0.0028 26.5 5.4 45 524-572 16-60 (88)
156 3mp2_A Non-structural protein 27.5 67 0.0023 32.5 5.2 29 887-939 167-195 (211)
157 3dbh_I NEDD8; cell cycle, acti 27.5 1.1E+02 0.0038 25.4 6.1 45 524-572 11-55 (88)
158 1sif_A Ubiquitin; hydrophobic 27.4 85 0.0029 26.6 5.3 44 525-572 9-52 (88)
159 2kk8_A Uncharacterized protein 26.8 98 0.0034 26.1 5.6 44 525-572 10-53 (84)
160 2ylm_A Ubiquitin carboxyl-term 26.7 53 0.0018 38.2 5.0 37 210-246 37-73 (530)
161 3a9j_A Ubiquitin; protein comp 26.2 93 0.0032 24.9 5.2 31 542-572 13-43 (76)
162 1ndd_A NEDD8, protein (ubiquit 24.7 1.1E+02 0.0036 24.6 5.3 31 542-572 13-43 (76)
163 4gmv_A RAS-associated and plec 24.6 1.3E+02 0.0045 31.8 7.2 67 522-592 28-95 (281)
164 2kjr_A CG11242; UBL, ubiquitin 24.6 2.5E+02 0.0087 24.2 8.0 33 541-573 29-61 (95)
165 3n3k_B Ubiquitin; hydrolase, p 24.4 81 0.0028 26.1 4.6 43 526-572 4-46 (85)
166 2cr8_A MDM4 protein; ZF-ranbp 24.4 22 0.00074 27.4 0.7 14 804-817 7-20 (53)
167 4ekf_A Adenain; alpha and beta 24.3 61 0.0021 32.0 4.1 31 881-931 40-71 (204)
168 1yqb_A Ubiquilin 3; structural 23.0 1.5E+02 0.0051 25.8 6.2 46 522-572 19-64 (100)
169 3phx_B Ubiquitin-like protein 22.4 1.4E+02 0.0047 24.4 5.6 43 526-572 5-47 (79)
170 4fbj_B NEDD8; effector-HOST ta 22.0 1.3E+02 0.0043 25.5 5.4 41 528-572 3-43 (88)
171 3vdz_A Ubiquitin-40S ribosomal 21.4 1.5E+02 0.0051 26.4 6.0 45 524-572 34-78 (111)
172 1c1y_B Proto-onkogene serine/t 20.8 3.8E+02 0.013 22.5 8.6 72 200-275 4-76 (77)
173 1wh3_A 59 kDa 2'-5'-oligoadeny 20.7 1.4E+02 0.0048 24.8 5.4 44 525-572 7-50 (87)
174 1ef1_A Moesin; membrane, FERM 20.4 3.5E+02 0.012 28.1 9.8 46 197-244 1-47 (294)
No 1
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.5e-77 Score=683.78 Aligned_cols=356 Identities=57% Similarity=1.003 Sum_probs=320.2
Q ss_pred ccccccccccCCCccchHHHHHHHhcChHHHHHHHhc-cccccccCCCCCCchHHHHHHHHHHHHhcCCCCCccChHHHH
Q 002138 335 CLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGD-YQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFK 413 (960)
Q Consensus 335 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~-~~~~~~~~n~~~~~~~l~~al~~L~~~l~~~~~~~i~P~~f~ 413 (960)
..+|++||.|+||||||||+||||+|+|+|+++|+.. +..+++..+|.+..+.++.+|+.|++.||.+...+++|..|+
T Consensus 4 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~~ 83 (367)
T 2y6e_A 4 IQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFK 83 (367)
T ss_dssp CCTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSCSEECCHHHH
T ss_pred CCCCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCCCCCcCHHHHH
Confidence 4689999999999999999999999999999999964 667777888888889999999999999999888899999999
Q ss_pred HHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCccccccceEEE
Q 002138 414 LKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYR 493 (960)
Q Consensus 414 ~~l~~~~~~F~~~~QQDA~EfL~~LLd~L~eel~~~~~kp~~e~~d~~~~~~~~~a~e~w~~~~~~n~SiI~~lF~G~~~ 493 (960)
.++++..|+|.+++||||||||.+|||.||++++++.++|+.+.++.+|.++.+.|.+.|.++..++.|+|.++|+|+++
T Consensus 84 ~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~G~l~ 163 (367)
T 2y6e_A 84 TQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFK 163 (367)
T ss_dssp HHHHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHHHHHCEEEE
T ss_pred HHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHHHHHHHHHhcCCccccccCcEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCCCCeeeeecCCeeEEecCCCCCccceEEEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhcccCCccceee
Q 002138 494 SMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLV 573 (960)
Q Consensus 494 s~l~C~~C~~~S~~~epf~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~ 573 (960)
++++|..|+++|.++|||++|+||||....+.+.+.+
T Consensus 164 s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~------------------------------------------- 200 (367)
T 2y6e_A 164 STLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPM------------------------------------------- 200 (367)
T ss_dssp EEEECTTTCCEEEEEEEESSEEEECCC-----------------------------------------------------
T ss_pred eeEEeCCCCCEeeeEccCeeEEeeCCCCcCCcceeee-------------------------------------------
Confidence 9999999999999999999999999965321110000
Q ss_pred eeeeccceeeecCCCccccccccCCCcEEEEEcCCCCCCCceEEeeeeccccccccccccccceeeccceEEecCCCCCh
Q 002138 574 AEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNG 653 (960)
Q Consensus 574 ~e~~~~~~~~~~~~~~~~~~~I~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~ 653 (960)
T Consensus 201 -------------------------------------------------------------------------------- 200 (367)
T 2y6e_A 201 -------------------------------------------------------------------------------- 200 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHhcCCCcCCCCCCCCcccccccCCCCCCccccccccccCCCCCCCCCCcCCCCCCCCCCceEEEecCCCCcc
Q 002138 654 SDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTE 733 (960)
Q Consensus 654 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (960)
T Consensus 201 -------------------------------------------------------------------------------- 200 (367)
T 2y6e_A 201 -------------------------------------------------------------------------------- 200 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCcCCCCCCeEEEEecChhhHHhhhhhhhhhhhhhcccccccCCCCCCCCHHHHHHHhhCccccCCCCCCCCcc
Q 002138 734 IKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPR 813 (960)
Q Consensus 734 ~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~dCL~~f~~~E~L~~~d~wyC~~ 813 (960)
|.+. ......++|++||+.|+++|.|+++|.|+|++
T Consensus 201 ---------------------~~~~-----------------------~~~~~~~sL~~~L~~f~~~E~l~~~~~~~C~~ 236 (367)
T 2y6e_A 201 ---------------------LQPQ-----------------------KKKKTTVALRDCIELFTTMETLGEHDPWYCPN 236 (367)
T ss_dssp -----------------------------------------------------CEEHHHHHHHHTSCEECCC-CCEEETT
T ss_pred ---------------------eccc-----------------------cccCCCCCHHHHHHHhcccccCCCCCCccCCC
Confidence 0000 00003468999999999999999999999999
Q ss_pred ccCcceeEEEEEeeeCCCeEEEEEEeeEecccccccCCeeeeccCCCCCCCCccccCCCCCCccEEEEEEEEeecCCCCC
Q 002138 814 CKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYGGMGGG 893 (960)
Q Consensus 814 Ck~~~~AtKk~~l~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~AVinH~G~l~gG 893 (960)
|++++.|+|++.|+++|+|||||||||.|+++.+.|+++.|.||++.|||++|+..+.. .+..|+|+|||+|.|++++|
T Consensus 237 C~~~~~a~K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~-~~~~Y~L~avv~H~G~~~~G 315 (367)
T 2y6e_A 237 CKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLSA-RPYVYDLIAVSNHYGAMGVG 315 (367)
T ss_dssp TTEEECCEEEEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGGGBSCSSS-CCCEEEEEEEEEEECSSSSC
T ss_pred CCCCceEEEEEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhhhccCCCC-CCceEEEEEEeecCCCCCCC
Confidence 99999999999999999999999999999988889999999999778999999987655 67899999999999999999
Q ss_pred eEEEEEeccccchhhhhhhhhccccccccCCCcEEEEcCCcceecCcccccCCCeEEEEEEEecC
Q 002138 894 HYTAFVDIDYHSAFKQYEYLKTQITSVQLGHKRWFEFDDDRVYPVSEDNIKTSAAYVLFYKRVSD 958 (960)
Q Consensus 894 HYtAy~k~~~~~~~~~~~~~~~~~~~~~~~~~~Wy~fdDs~Vs~vs~~~v~s~~AYvLFY~R~~~ 958 (960)
||+||+|+ ..+++||+|||+.|+++++++|.+..||||||+|++.
T Consensus 316 HY~a~~~~--------------------~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~~ 360 (367)
T 2y6e_A 316 HYTAYAKN--------------------KLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRDD 360 (367)
T ss_dssp EEEEEEEC--------------------TTTCCEEEEETTEEEECCGGGTSSTTEEEEEEEECCC
T ss_pred eeeEEEEc--------------------CCCCeEEEECCCCceECCHHHcCCCCcEEEEEEEcCC
Confidence 99999998 5578999999999999999999999999999999874
No 2
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=100.00 E-value=8.7e-74 Score=658.69 Aligned_cols=338 Identities=45% Similarity=0.860 Sum_probs=306.7
Q ss_pred ccccccccccCCCccchHHHHHHHhcChHHHHHHHhc-cccccccCCCCCCchHHHHHHHHHHHHhcCCCCCccChHHHH
Q 002138 335 CLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGD-YQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFK 413 (960)
Q Consensus 335 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~-~~~~~~~~n~~~~~~~l~~al~~L~~~l~~~~~~~i~P~~f~ 413 (960)
..+|++||.|+||||||||+||||+|+|+|++||+.. +..+++..++++..+.++.+|+.|++.||.+...+++|..|+
T Consensus 58 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~i~P~~f~ 137 (396)
T 2gfo_A 58 SGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFK 137 (396)
T ss_dssp SSTTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSCEEEECCHHHH
T ss_pred CCCCcccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhhcccCCCCcccHHHHHHHHHHHHHHcCCCceECHHHHH
Confidence 3689999999999999999999999999999999864 556677778888888999999999999999888899999999
Q ss_pred HHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCccccccceEEE
Q 002138 414 LKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYR 493 (960)
Q Consensus 414 ~~l~~~~~~F~~~~QQDA~EfL~~LLd~L~eel~~~~~kp~~e~~d~~~~~~~~~a~e~w~~~~~~n~SiI~~lF~G~~~ 493 (960)
.+++..++.|.+++||||||||.+|||.||+++++...+++.+..+.++.++.+.|++.|..+..++.|+|.++|+|+++
T Consensus 138 ~~l~~~~~~f~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~l~ 217 (396)
T 2gfo_A 138 ITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFK 217 (396)
T ss_dssp HHHHHHCGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCHHHHHHHHHHHHHHHCCSHHHHHHCEEEE
T ss_pred HHHHHhchhhcCCCCCChHHHHHHHHHHHHHHHhhhccccccccccccccchhhHHHHHHHHhhhccCCccchhhCcEEE
Confidence 99999999999999999999999999999999998887777777777888999999999999999999999999999999
Q ss_pred EEEeeCCCCCeeeeecCCeeEEecCCCCCccceEEEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhcccCCccceee
Q 002138 494 SMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLV 573 (960)
Q Consensus 494 s~l~C~~C~~~S~~~epf~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~ 573 (960)
++++|..|++++.++|+|++|+|+||...
T Consensus 218 s~i~C~~C~~~s~~~e~f~~LsL~ip~~~--------------------------------------------------- 246 (396)
T 2gfo_A 218 STVQCLTCHKKSRTFEAFMYLSLPLASTS--------------------------------------------------- 246 (396)
T ss_dssp EEEEETTTCCEEEEEEEESSEEECCSCSS---------------------------------------------------
T ss_pred EEEEeCCCCceecccccceeeeecccccc---------------------------------------------------
Confidence 99999999999999999999999997320
Q ss_pred eeeeccceeeecCCCccccccccCCCcEEEEEcCCCCCCCceEEeeeeccccccccccccccceeeccceEEecCCCCCh
Q 002138 574 AEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNG 653 (960)
Q Consensus 574 ~e~~~~~~~~~~~~~~~~~~~I~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~ 653 (960)
T Consensus 247 -------------------------------------------------------------------------------- 246 (396)
T 2gfo_A 247 -------------------------------------------------------------------------------- 246 (396)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHhcCCCcCCCCCCCCcccccccCCCCCCccccccccccCCCCCCCCCCcCCCCCCCCCCceEEEecCCCCcc
Q 002138 654 SDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTE 733 (960)
Q Consensus 654 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (960)
T Consensus 247 -------------------------------------------------------------------------------- 246 (396)
T 2gfo_A 247 -------------------------------------------------------------------------------- 246 (396)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCcCCCCCCeEEEEecChhhHHhhhhhhhhhhhhhcccccccCCCCCCCCHHHHHHHhhCccccCCCCCCCCcc
Q 002138 734 IKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPR 813 (960)
Q Consensus 734 ~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~dCL~~f~~~E~L~~~d~wyC~~ 813 (960)
.++|++||+.|+++|.|+++|.|+|++
T Consensus 247 -----------------------------------------------------~~sL~~~L~~f~~~E~l~~~n~~~C~~ 273 (396)
T 2gfo_A 247 -----------------------------------------------------KCTLQDCLRLFSKEEKLTDNNRFYCSH 273 (396)
T ss_dssp -----------------------------------------------------EEEHHHHHHHHTSCEEECSTTCEEETT
T ss_pred -----------------------------------------------------cCCHHHHHHHhCCcccccCCcccccCC
Confidence 137999999999999999999999999
Q ss_pred ccCcceeEEEEEeeeCCCeEEEEEEeeEecccccccCCeeeeccCCCCCCCCccccCCCCCCccEEEEEEEEeecCCCCC
Q 002138 814 CKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYGGMGGG 893 (960)
Q Consensus 814 Ck~~~~AtKk~~l~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~AVinH~G~l~gG 893 (960)
|+.++.|+|++.|+++|+|||||||||.|+..++.|+.+.|.||++.|||++|+..+.. ....|+|+|||+|.|++++|
T Consensus 274 C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~-~~~~Y~L~avv~H~G~~~~G 352 (396)
T 2gfo_A 274 CRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKN-NLKKYNLFSVSNHYGGLDGG 352 (396)
T ss_dssp TTEEECEEEEEEEEECCSEEEEEECCEEECSSSEEECCCEEECCSSCBCCGGGBCSCCS-SCCCBEEEEEEEEESCTTTC
T ss_pred cccccceEEEEEEecCCcEEEEEecceeccCccceecCceEecchhhccccccccCCCC-CCceEEEEEEEEecCCCCCC
Confidence 99999999999999999999999999999987889999999999878999999986544 56789999999999999999
Q ss_pred eEEEEEeccccchhhhhhhhhccccccccCCCcEEEEcCCcceecCcccccCCCeEEEEEEEec
Q 002138 894 HYTAFVDIDYHSAFKQYEYLKTQITSVQLGHKRWFEFDDDRVYPVSEDNIKTSAAYVLFYKRVS 957 (960)
Q Consensus 894 HYtAy~k~~~~~~~~~~~~~~~~~~~~~~~~~~Wy~fdDs~Vs~vs~~~v~s~~AYvLFY~R~~ 957 (960)
||+||+|+ ..+++||.|||+.|+++++++|.+.+||||||+|++
T Consensus 353 HY~a~v~~--------------------~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~ 396 (396)
T 2gfo_A 353 HYTAYCKN--------------------AARQRWFKFDDHEVSDISVSSVKSSAAYILFYTSLG 396 (396)
T ss_dssp EEEEEEEE--------------------TTTTEEEEEETTEEEECCHHHHSCTTEEEEEEECC-
T ss_pred ceEEEEcC--------------------CCCCCEEEEeCCCeEECCHHHcCCCCceEEEEEEcC
Confidence 99999998 457899999999999999999999999999999975
No 3
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=100.00 E-value=1.3e-69 Score=612.22 Aligned_cols=338 Identities=43% Similarity=0.753 Sum_probs=306.7
Q ss_pred ccccccccccCCCccchHHHHHHHhcChHHHHHHHhc-cccccccCCCCCCchHHHHHHHHHHHHhc-CCCCCccChHHH
Q 002138 335 CLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGD-YQKEINYENPLGLNGELALAFGDLLRKLW-APGGIPVAPRMF 412 (960)
Q Consensus 335 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~-~~~~~~~~n~~~~~~~l~~al~~L~~~l~-~~~~~~i~P~~f 412 (960)
..+|++||.|+||||||||+||||+|+|+|+++++.. +....+. ......+++.+|+.|++.|| ......++|..|
T Consensus 5 ~~~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~--~~~~~~~l~~~l~~l~~~l~~~~~~~~~~p~~~ 82 (348)
T 3nhe_A 5 SAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHH--GSNAHTALVEEFAKLIQTIWTSSPNDVVSPSEF 82 (348)
T ss_dssp -CCSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCS--SCCTTHHHHHHHHHHHHHHTTCCTTCEECCHHH
T ss_pred CCCCCCCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhhcc--CCCcccHHHHHHHHHHHHHHcCCCCCccCHHHH
Confidence 4689999999999999999999999999999999864 3333332 22346789999999999999 566778999999
Q ss_pred HHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCccccccceEE
Q 002138 413 KLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQY 492 (960)
Q Consensus 413 ~~~l~~~~~~F~~~~QQDA~EfL~~LLd~L~eel~~~~~kp~~e~~d~~~~~~~~~a~e~w~~~~~~n~SiI~~lF~G~~ 492 (960)
+.+++...|.|.+++||||||||.+|||.||+++++...++.....+.++.++.+.+.+.|..+..++.++|.++|+|++
T Consensus 83 ~~~l~~~~~~f~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~ 162 (348)
T 3nhe_A 83 KTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQL 162 (348)
T ss_dssp HHHHHHHSGGGSSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCCTTSCHHHHHHHHHHHHHTTCCCHHHHHHCEEE
T ss_pred HHHHHHhhhhhCCCCccCHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHhhcCCccccccceEE
Confidence 99999999999999999999999999999999999988887777777788899999999999999999999999999999
Q ss_pred EEEEeeCCCCCeeeeecCCeeEEecCCCCCccceEEEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhcccCCcccee
Q 002138 493 RSMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLL 572 (960)
Q Consensus 493 ~s~l~C~~C~~~S~~~epf~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~ 572 (960)
+++++|..|++++.++|+|++|+|+||....
T Consensus 163 ~~~~~C~~C~~~s~~~e~f~~LsL~i~~~~~------------------------------------------------- 193 (348)
T 3nhe_A 163 KSSLTCTDCGYCSTVFDPFWDLSLPIAKRGY------------------------------------------------- 193 (348)
T ss_dssp EEEEEETTTCCEEEEEEEESSEEECCCSSCS-------------------------------------------------
T ss_pred EEEEEcCCCCCEeeeeccceEEeeeCCCccc-------------------------------------------------
Confidence 9999999999999999999999999974210
Q ss_pred eeeeeccceeeecCCCccccccccCCCcEEEEEcCCCCCCCceEEeeeeccccccccccccccceeeccceEEecCCCCC
Q 002138 573 VAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTN 652 (960)
Q Consensus 573 ~~e~~~~~~~~~~~~~~~~~~~I~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~ 652 (960)
T Consensus 194 -------------------------------------------------------------------------------- 193 (348)
T 3nhe_A 194 -------------------------------------------------------------------------------- 193 (348)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHhcCCCcCCCCCCCCcccccccCCCCCCccccccccccCCCCCCCCCCcCCCCCCCCCCceEEEecCCCCc
Q 002138 653 GSDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPT 732 (960)
Q Consensus 653 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (960)
T Consensus 194 -------------------------------------------------------------------------------- 193 (348)
T 3nhe_A 194 -------------------------------------------------------------------------------- 193 (348)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCcCCCCCCeEEEEecChhhHHhhhhhhhhhhhhhcccccccCCCCCCCCHHHHHHHhhCccccCCCCCCCCc
Q 002138 733 EIKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCP 812 (960)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~dCL~~f~~~E~L~~~d~wyC~ 812 (960)
..++|++||+.|+++|.|+++|.|+|+
T Consensus 194 -----------------------------------------------------~~~sl~~~L~~~~~~e~l~~~~~~~C~ 220 (348)
T 3nhe_A 194 -----------------------------------------------------PEVTLMDCMRLFTKEDVLDGDEKPTCC 220 (348)
T ss_dssp -----------------------------------------------------SCEEHHHHHHHHHSCEEECGGGCCEET
T ss_pred -----------------------------------------------------CCCCHHHHHHHhcCceEecCCCceECC
Confidence 124899999999999999999999999
Q ss_pred cccCcceeEEEEEeeeCCCeEEEEEEeeEecccccccCCeeeeccCCCCCCCCccccCCCCCCccEEEEEEEEeecCCCC
Q 002138 813 RCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYGGMGG 892 (960)
Q Consensus 813 ~Ck~~~~AtKk~~l~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~AVinH~G~l~g 892 (960)
+|+.++.|+|++.|+++|+||+||||||.+++....|+.+.|.||++.|||++|+.... ....|+|+|||+|.|++.+
T Consensus 221 ~C~~~~~~~k~~~i~~lP~vL~i~lkRf~~~~~~~~K~~~~v~fp~~~ldl~~~~~~~~--~~~~Y~L~avv~H~G~~~~ 298 (348)
T 3nhe_A 221 RCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASENT--NHAVYNLYAVSNHSGTTMG 298 (348)
T ss_dssp TTTEECCEEEEEEEEECCSEEEEEECCBCCCSSCCCBCCCCEECCSSCEECGGGBCTTC--CCCEEEEEEEEEEEECSSC
T ss_pred CCCCcccEEEEEEeecCCceEEEEEEcccccCCceeecCcceeccCCcCCHhhhcCCCC--CCCcEEEEEEEEccCCCCC
Confidence 99999999999999999999999999999998888999999999988899999996543 4578999999999999999
Q ss_pred CeEEEEEeccccchhhhhhhhhccccccccCCCcEEEEcCCcceecCcccccCCCeEEEEEEEecC
Q 002138 893 GHYTAFVDIDYHSAFKQYEYLKTQITSVQLGHKRWFEFDDDRVYPVSEDNIKTSAAYVLFYKRVSD 958 (960)
Q Consensus 893 GHYtAy~k~~~~~~~~~~~~~~~~~~~~~~~~~~Wy~fdDs~Vs~vs~~~v~s~~AYvLFY~R~~~ 958 (960)
|||+||+|+ ..+++||+|||+.|+++++++|.+..||||||+|++.
T Consensus 299 GHY~~~~~~--------------------~~~~~W~~~nD~~V~~v~~~~v~~~~aY~LfY~r~~~ 344 (348)
T 3nhe_A 299 GHYTAYCRS--------------------PGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELASP 344 (348)
T ss_dssp EEEEEEEEC--------------------TTTCCEEEEETTEEEEECGGGTCCTTEEEEEEEECC-
T ss_pred cccEEEEcc--------------------CCCCcEEEEeCCCceECCHHHcCCCCceEEEEEecCC
Confidence 999999998 5688999999999999999999999999999999975
No 4
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=100.00 E-value=1.5e-68 Score=605.20 Aligned_cols=334 Identities=40% Similarity=0.688 Sum_probs=284.0
Q ss_pred cccccccCCCccchHHHHHHHhcChHHHHHHHhc-cccccccCCCCCCchHHHHHHHHHHHHhcCCCC-CccChHHHHHH
Q 002138 338 GLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGD-YQKEINYENPLGLNGELALAFGDLLRKLWAPGG-IPVAPRMFKLK 415 (960)
Q Consensus 338 g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~-~~~~~~~~n~~~~~~~l~~al~~L~~~l~~~~~-~~i~P~~f~~~ 415 (960)
|++||.|+||||||||+||||+++|+|+++++.. +..... ..+...+++.+|+.|+..||.... .+++|..|+.+
T Consensus 2 G~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~---~~~~~~~l~~~l~~l~~~l~~~~~~~~v~p~~~~~~ 78 (355)
T 3i3t_A 2 GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVP---GGGRAQELTEAFADVIGALWHPDSCEAVNPTRFRAV 78 (355)
T ss_dssp -CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC---------CHHHHHHHHHHHHTSSCSSCCCBCCHHHHHH
T ss_pred CCcCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhcC---CCCchhHHHHHHHHHHHHHhcCCCCCcccHHHHHHH
Confidence 7899999999999999999999999999999864 322222 122345799999999999998764 68999999999
Q ss_pred HhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccc---------------cCCCCCChHHHHHHHHHhhhccC
Q 002138 416 LANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEA---------------KDAEGQPEEEVAEEYWRNHRARN 480 (960)
Q Consensus 416 l~~~~~~F~~~~QQDA~EfL~~LLd~L~eel~~~~~kp~~e~---------------~d~~~~~~~~~a~e~w~~~~~~n 480 (960)
+++..+.|.+++||||||||.+|||.||+++++..++..... ......++.+.+...|..+..++
T Consensus 79 l~~~~~~f~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (355)
T 3i3t_A 79 FQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLERE 158 (355)
T ss_dssp HHHHCGGGCSSCCCBHHHHHHHHHHHHHHHHCCC----------------------------CCHHHHHHHHHHHHHHHC
T ss_pred HHHhChhhCCCCccCHHHHHHHHHHHHHHHHhhhccCCCcccccCcccCccccccccccCCCCCHHHHHHHHHHHhhhcc
Confidence 999999999999999999999999999999987655432111 11233456778899999999999
Q ss_pred CCccccccceEEEEEEeeCCCCCeeeeecCCeeEEecCCCCCccceEEEEEccCCCCCCcceeEEeCCCCchHHHHHHHH
Q 002138 481 DSIIVDLCQGQYRSMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALS 560 (960)
Q Consensus 481 ~SiI~~lF~G~~~s~l~C~~C~~~S~~~epf~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~ 560 (960)
.|+|.++|+|+++++++|..|++++.++|+|++|+|+||.....
T Consensus 159 ~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~~------------------------------------ 202 (355)
T 3i3t_A 159 DSKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFA------------------------------------ 202 (355)
T ss_dssp CSHHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCC----------------------------------------
T ss_pred CCcccccccEEEEeeEEeCCCCCCceeeccceeecccCCccccc------------------------------------
Confidence 99999999999999999999999999999999999999843100
Q ss_pred hhcccCCccceeeeeeeccceeeecCCCccccccccCCCcEEEEEcCCCCCCCceEEeeeeccccccccccccccceeec
Q 002138 561 TKCFLRNHEKLLVAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFG 640 (960)
Q Consensus 561 ~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~I~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg 640 (960)
T Consensus 203 -------------------------------------------------------------------------------- 202 (355)
T 3i3t_A 203 -------------------------------------------------------------------------------- 202 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEecCCCCChhHHHHHHHHhcCCCcCCCCCCCCcccccccCCCCCCccccccccccCCCCCCCCCCcCCCCCCCCCC
Q 002138 641 TPLVGRLSDLTNGSDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDD 720 (960)
Q Consensus 641 ~P~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (960)
T Consensus 203 -------------------------------------------------------------------------------- 202 (355)
T 3i3t_A 203 -------------------------------------------------------------------------------- 202 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEecCCCCcccccCCCCCcCCCCCCeEEEEecChhhHHhhhhhhhhhhhhhcccccccCCCCCCCCHHHHHHHhhCc
Q 002138 721 FQFYRLDSIRPTEIKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKE 800 (960)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~dCL~~f~~~ 800 (960)
...++|++||+.|+++
T Consensus 203 ----------------------------------------------------------------~~~~sl~~~L~~~~~~ 218 (355)
T 3i3t_A 203 ----------------------------------------------------------------GGKVSLRDCFNLFTKE 218 (355)
T ss_dssp -------------------------------------------------------------------CBHHHHHHHHHCC
T ss_pred ----------------------------------------------------------------cCccCHHHHHHHhCCc
Confidence 0235899999999999
Q ss_pred cccCCCCCCCCccccCcceeEEEEEeeeCCCeEEEEEEeeEecccccccCCeeeeccCCCCCCCCccccCCCCCCccEEE
Q 002138 801 EPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVL 880 (960)
Q Consensus 801 E~L~~~d~wyC~~Ck~~~~AtKk~~l~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL 880 (960)
|.|+++|+|+|++|++++.|+|++.|+++|+||+||||||.++++...|+.+.|.||++.|||++|+.... +...|+|
T Consensus 219 e~l~~~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~lkRF~~~~~~~~K~~~~v~fp~~~l~l~~~~~~~~--~~~~Y~L 296 (355)
T 3i3t_A 219 EELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGDFASDKA--GSPVYQL 296 (355)
T ss_dssp EEECGGGCCCCSSSCCCCCEEEEEEEEECCSEEEEEECCEECCSSCCEECCCCCBCCSSCEECGGGBC------CCEEEE
T ss_pred cccCCCCCeeCCCCCCccceEEEEEcccCChheEEEhhheecCCCCceECCcceeCCccccCchhhccCCC--CCcceEE
Confidence 99999999999999999999999999999999999999999998888999999999998899999997543 4678999
Q ss_pred EEEEEeecCCCCCeEEEEEeccccchhhhhhhhhccccccccCCCcEEEEcCCcceecCcccccCCCeEEEEEEEecC
Q 002138 881 YAISNHYGGMGGGHYTAFVDIDYHSAFKQYEYLKTQITSVQLGHKRWFEFDDDRVYPVSEDNIKTSAAYVLFYKRVSD 958 (960)
Q Consensus 881 ~AVinH~G~l~gGHYtAy~k~~~~~~~~~~~~~~~~~~~~~~~~~~Wy~fdDs~Vs~vs~~~v~s~~AYvLFY~R~~~ 958 (960)
+|||+|.|++++|||+||+|. .++||+|||+.|+++++++|.+..||||||+|++.
T Consensus 297 ~avv~H~G~~~~GHY~~~~~~----------------------~~~W~~~nD~~V~~v~~~~v~~~~aYiLfY~r~~~ 352 (355)
T 3i3t_A 297 YALCNHSGSVHYGHYTALCRC----------------------QTGWHVYNDSRVSPVSENQVASSEGYVLFYQLMQE 352 (355)
T ss_dssp EEEEEEEEETTEEEEEEEEEE----------------------TTEEEEEETTEEEEECHHHHHTSCCSEEEEEEC--
T ss_pred EEEEEecCCCCCCeEEEEEEc----------------------CCeEEEEcCCCcEECCHHHcCCCCcEEEEEEeccC
Confidence 999999999999999999998 56799999999999999999999999999999874
No 5
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=100.00 E-value=4.3e-63 Score=561.43 Aligned_cols=297 Identities=24% Similarity=0.402 Sum_probs=256.1
Q ss_pred cccccccccCCCccchHHHHHHHhcChHHHHHHHhccccccccCCCCCCchHHHHHHHHHHHHhcCCCCCccChHHHHHH
Q 002138 336 LLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKLK 415 (960)
Q Consensus 336 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~al~~L~~~l~~~~~~~i~P~~f~~~ 415 (960)
.+|++||.|+||||||||+||||+|+|+|+++++..... ......++..+|+.||..|+.+. .++.|..|+.+
T Consensus 3 ~~g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~------~~~~~~~~~~~l~~lf~~l~~~~-~~~~~~~l~~~ 75 (353)
T 1nb8_A 3 HTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTE------GDDSSKSVPLALQRVFYELQHSD-KPVGTKKLTKS 75 (353)
T ss_dssp CSSCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCT------TSCTTTCHHHHHHHHHHHHHHCS-SCBCCHHHHHH
T ss_pred CCCCCCcccCchhhHHHHHHHHHHCCHHHHHHHHhCCCC------CCcccccHHHHHHHHHHHHhhcC-CCCCCHHHHhh
Confidence 578999999999999999999999999999998753111 01123468899999999998754 57899999988
Q ss_pred HhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCccccccceEEEEE
Q 002138 416 LANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSM 495 (960)
Q Consensus 416 l~~~~~~F~~~~QQDA~EfL~~LLd~L~eel~~~~~kp~~e~~d~~~~~~~~~a~e~w~~~~~~n~SiI~~lF~G~~~s~ 495 (960)
++. +.|.+++||||||||.+|||.||++++.. ...++|.++|+|+++++
T Consensus 76 ~~~--~~~~~~~QqDA~EFl~~LLd~L~~~~~~~-----------------------------~~~s~i~~~F~g~~~~~ 124 (353)
T 1nb8_A 76 FGW--ETLDSFMQHDVQELCRVLLDNVENKMKGT-----------------------------CVEGTIPKLFRGKMVSY 124 (353)
T ss_dssp HTC--CBTTTTTTSCHHHHHHHHHHHHHHHTTTS-----------------------------TTTTHHHHHHCEEEEEE
T ss_pred cCC--CCCCcccchhHHHHHHHHHHHHHHHhcCC-----------------------------CccchhhhhceeEEEEE
Confidence 863 78999999999999999999999987531 13468999999999999
Q ss_pred EeeCCCCCeeeeecCCeeEEecCCCCCccceEEEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhcccCCccceeeee
Q 002138 496 LVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAE 575 (960)
Q Consensus 496 l~C~~C~~~S~~~epf~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~e 575 (960)
++|..|++.|.++|+|++|+|+||..
T Consensus 125 i~C~~C~~~s~~~e~f~~LsL~i~~~------------------------------------------------------ 150 (353)
T 1nb8_A 125 IQCKEVDYRSDRREDYYDIQLSIKGK------------------------------------------------------ 150 (353)
T ss_dssp EEESSSCCEEEEEEEESCEEECCTTC------------------------------------------------------
T ss_pred EEeccCCCeeceeeeeEEEEEEECCC------------------------------------------------------
Confidence 99999999999999999999998721
Q ss_pred eeccceeeecCCCccccccccCCCcEEEEEcCCCCCCCceEEeeeeccccccccccccccceeeccceEEecCCCCChhH
Q 002138 576 IYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNGSD 655 (960)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~I~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~ 655 (960)
T Consensus 151 -------------------------------------------------------------------------------- 150 (353)
T 1nb8_A 151 -------------------------------------------------------------------------------- 150 (353)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCCcCCCCCCCCcccccccCCCCCCccccccccccCCCCCCCCCCcCCCCCCCCCCceEEEecCCCCcccc
Q 002138 656 IRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTEIK 735 (960)
Q Consensus 656 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (960)
T Consensus 151 -------------------------------------------------------------------------------- 150 (353)
T 1nb8_A 151 -------------------------------------------------------------------------------- 150 (353)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCcCCCCCCeEEEEecChhhHHhhhhhhhhhhhhhcccccccCCCCCCCCHHHHHHHhhCccccCCCCCCCCcccc
Q 002138 736 MNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPRCK 815 (960)
Q Consensus 736 ~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~dCL~~f~~~E~L~~~d~wyC~~Ck 815 (960)
.+|.+||+.|+.+|.|++++.|+|+.|+
T Consensus 151 ----------------------------------------------------~~l~~~L~~~~~~E~l~~~~~~~C~~c~ 178 (353)
T 1nb8_A 151 ----------------------------------------------------KNIFESFVDYVAVEQLDGDNKYDAGEHG 178 (353)
T ss_dssp ----------------------------------------------------SBHHHHHHHHTCCEEECTTTCEECGGGC
T ss_pred ----------------------------------------------------cchHHHHHHhhCccccCCCccccCCcCc
Confidence 1578999999999999999999999996
Q ss_pred CcceeEEEEEeeeCCCeEEEEEEeeEecc--cccccCCeeeeccCCCCCCCCccccCCCCCCccEEEEEEEEeecCCCCC
Q 002138 816 KHWQASKKLDLWRSPDILVIHLKRFSFSR--YFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYGGMGGG 893 (960)
Q Consensus 816 ~~~~AtKk~~l~~lP~iLiIhLKRF~~~~--~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~AVinH~G~l~gG 893 (960)
++.|+|++.|+++|+||+||||||.|+. +...|+++.|.|| ..|||++|+.......+..|+|+|||+|.|++++|
T Consensus 179 -~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~K~~~~v~fp-~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~~~~G 256 (353)
T 1nb8_A 179 -LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFP-EQLPLDEFLQKTDPKDPANYILHAVLVHSGDNHGG 256 (353)
T ss_dssp -EECEEEEEEESCCCSEEEEEECCCC--------CCCCCCCBCC-SEEECGGGBSSCCTTSCCEEEEEEEEEEESSTTCC
T ss_pred -cEeeEEEEEhhcCCCceEEEEecEEEecccCceEecCcEEECC-CeeehhhhhcccCCCCCceEEEEEEEEEeCCCCCc
Confidence 6889999999999999999999999985 4578999999999 59999999986554467899999999999999999
Q ss_pred eEEEEEeccccchhhhhhhhhccccccccCCCcEEEEcCCcceecCccccc---------------CCCeEEEEEEEecC
Q 002138 894 HYTAFVDIDYHSAFKQYEYLKTQITSVQLGHKRWFEFDDDRVYPVSEDNIK---------------TSAAYVLFYKRVSD 958 (960)
Q Consensus 894 HYtAy~k~~~~~~~~~~~~~~~~~~~~~~~~~~Wy~fdDs~Vs~vs~~~v~---------------s~~AYvLFY~R~~~ 958 (960)
||+||+|+ ..+++||+|||+.|+++++++|. +.+||||||+|++.
T Consensus 257 HY~a~v~~--------------------~~~~~W~~fnD~~V~~v~~~~v~~~~~gg~~~~~~~~~~~~aYiLfY~r~~~ 316 (353)
T 1nb8_A 257 HYVVYLNP--------------------KGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESK 316 (353)
T ss_dssp CEEEEECT--------------------TSSSCCEEEETTEEEECCHHHHTGGGSCCC-------CCEEEEEEEEEETTT
T ss_pred EEEEEEec--------------------CCCCCEEEEECcceEECCHHHHHHHhcCCCccccccCcCCeEEEEEEEECch
Confidence 99999997 56899999999999999988875 36899999999874
No 6
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=100.00 E-value=2.9e-62 Score=564.53 Aligned_cols=318 Identities=24% Similarity=0.369 Sum_probs=257.6
Q ss_pred cccccccccCCCccchHHHHHHHhcChHHHHHHHhccccccccCCCCCCchHHHHHHHHHHHHhcCCCCCccChHHHHHH
Q 002138 336 LLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKLK 415 (960)
Q Consensus 336 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~al~~L~~~l~~~~~~~i~P~~f~~~ 415 (960)
..+++||.|+||||||||+||||+|+|+|+++|+..... .....+.....+++.+|+.||..||.+. .+++|..|+.+
T Consensus 11 ~~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~-~~~~~~~~~~~~l~~~l~~lf~~l~~~~-~~v~P~~~~~~ 88 (404)
T 2ayn_A 11 MELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGA-LRASGEMASAQYITAALRDLFDSMDKTS-SSIPPIILLQF 88 (404)
T ss_dssp CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCC-C------CHHHHHHHHHHHHHHHHHHHC-SEECCHHHHHH
T ss_pred cCCCCCcccCCcccHHHHHHHHHHcCHHHHHHHHhcccc-cccCCCCCcccHHHHHHHHHHHHHhcCC-CcCChHHHHHH
Confidence 568899999999999999999999999999999864221 1111222345789999999999999765 88999999999
Q ss_pred HhhcCCCCC------CCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCccccccc
Q 002138 416 LANFAPQFS------GYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQ 489 (960)
Q Consensus 416 l~~~~~~F~------~~~QQDA~EfL~~LLd~L~eel~~~~~kp~~e~~d~~~~~~~~~a~e~w~~~~~~n~SiI~~lF~ 489 (960)
++...|+|. +++||||||||.+||+.||++++.....+. .+..+...|..+...+.++|.++|+
T Consensus 89 l~~~~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~----------~e~~~~~~~~~~~~~~~s~i~~~F~ 158 (404)
T 2ayn_A 89 LHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSV----------KETDSSSASAATPSKKKSLIDQFFG 158 (404)
T ss_dssp HHHHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC----------------------------CCHHHHHTC
T ss_pred HHHhCchhhccccCCCccccCHHHHHHHHHHHHHHHhccccCCcc----------cccchhhhhhhhccccCchhhhhcc
Confidence 999999998 599999999999999999999865432111 1112445788888888999999999
Q ss_pred eEEEEEEeeCCCCCee--eeecCCeeEEecCCCCCccceEEEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhcccCC
Q 002138 490 GQYRSMLVCPVCNKVS--VTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRN 567 (960)
Q Consensus 490 G~~~s~l~C~~C~~~S--~~~epf~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~ 567 (960)
|+++++++|..|++++ .++|+|++|+|+||..
T Consensus 159 G~l~s~i~C~~C~~~s~s~~~e~f~~Lsl~i~~~---------------------------------------------- 192 (404)
T 2ayn_A 159 VEFETTMKCTESEEEEVTKGKENQLQLSCFINQE---------------------------------------------- 192 (404)
T ss_dssp EEEEEEEEESSSCCCCCBCCEEEESSEEEECSSS----------------------------------------------
T ss_pred EEEEEEEEecCCCCccCceeeccCceEEeecCCC----------------------------------------------
Confidence 9999999999999995 7999999999998731
Q ss_pred ccceeeeeeeccceeeecCCCccccccccCCCcEEEEEcCCCCCCCceEEeeeeccccccccccccccceeeccceEEec
Q 002138 568 HEKLLVAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRL 647 (960)
Q Consensus 568 ~~~l~~~e~~~~~~~~~~~~~~~~~~~I~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~ 647 (960)
T Consensus 193 -------------------------------------------------------------------------------- 192 (404)
T 2ayn_A 193 -------------------------------------------------------------------------------- 192 (404)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCChhHHHHHHHHhcCCCcCCCCCCCCcccccccCCCCCCccccccccccCCCCCCCCCCcCCCCCCCCCCceEEEec
Q 002138 648 SDLTNGSDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLD 727 (960)
Q Consensus 648 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (960)
T Consensus 193 -------------------------------------------------------------------------------- 192 (404)
T 2ayn_A 193 -------------------------------------------------------------------------------- 192 (404)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccccCCCCCcCCCCCCeEEEEecChhhHHhhhhhhhhhhhhhcccccccCCCCCCCCHHHHHHHhhCccccCCCC
Q 002138 728 SIRPTEIKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPED 807 (960)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~dCL~~f~~~E~L~~~d 807 (960)
..+|++||+.|+.+ .+.
T Consensus 193 -----------------------------------------------------------~~~l~~~L~~~~~e-~l~--- 209 (404)
T 2ayn_A 193 -----------------------------------------------------------VKYLFTGLKLRLQE-EIT--- 209 (404)
T ss_dssp -----------------------------------------------------------CCBHHHHHHHTTEE-CCC---
T ss_pred -----------------------------------------------------------cccHHHHHHHhccc-cee---
Confidence 01588999999874 442
Q ss_pred CCCCccccCcceeEEEEEeeeCCCeEEEEEEeeEeccc--ccccCCeeeeccCCCCCCCCccccC---------------
Q 002138 808 MWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRY--FKSKLDTYVDFPIDDLDLSNYVCCK--------------- 870 (960)
Q Consensus 808 ~wyC~~Ck~~~~AtKk~~l~~lP~iLiIhLKRF~~~~~--~~~Ki~~~V~FPi~~LDls~~v~~~--------------- 870 (960)
|+|++|++.+.|+|++.|+++|+||+||||||.|+.. .+.|+.+.|.||. .|||++|+...
T Consensus 210 -~~c~~c~~~~~~~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fP~-~Ldl~~~~~~~~~~~~~~~~~~~~~~ 287 (404)
T 2ayn_A 210 -KQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPL-MLDMYELCTPELQEKMVSFRSKFKDL 287 (404)
T ss_dssp -CEETTTTEECCEEEEEEEEECCSSEEEEEECBCCCCSSSSCCBCCCCCBCCS-EEECGGGBCHHHHHHTTTTTGGGTCT
T ss_pred -ecchhhCCccceeeeeeHhhCCCceEEEEEEEEEecccCceeccCceeccCc-eeEHhHhcChhhhhhcchhhhHHhhh
Confidence 8999999999999999999999999999999999854 5689999999995 99999998641
Q ss_pred ---------------------------------CCCCCccEEEEEEEEeec-CCCCCeEEEEEeccccchhhhhhhhhcc
Q 002138 871 ---------------------------------NSQLSNRYVLYAISNHYG-GMGGGHYTAFVDIDYHSAFKQYEYLKTQ 916 (960)
Q Consensus 871 ---------------------------------~~~~~~~YdL~AVinH~G-~l~gGHYtAy~k~~~~~~~~~~~~~~~~ 916 (960)
....+..|+|+|||+|.| ++++|||+||+|+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~L~avv~H~G~s~~~GHY~a~v~~--------------- 352 (404)
T 2ayn_A 288 EDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKR--------------- 352 (404)
T ss_dssp TC----------------------CCCCCSCTTTTCCCSEEEEEEEEEEESSSTTSSEEEEEEEE---------------
T ss_pred hcccchhhhhhccccccccccccccccccccccCcCCCceEEEEEEEEecCCCCCCCCeEEEEEC---------------
Confidence 012357899999999999 7999999999997
Q ss_pred ccccccCCCcEEEEcCCcceecCcccccCCC-------eEEEEEEEec
Q 002138 917 ITSVQLGHKRWFEFDDDRVYPVSEDNIKTSA-------AYVLFYKRVS 957 (960)
Q Consensus 917 ~~~~~~~~~~Wy~fdDs~Vs~vs~~~v~s~~-------AYvLFY~R~~ 957 (960)
.+++||+|||+.|+++++++|.... ||||||+|++
T Consensus 353 ------~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~aYiLfY~r~~ 394 (404)
T 2ayn_A 353 ------KQDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLYGPRR 394 (404)
T ss_dssp ------ETTEEEEEBTTBCCCBCHHHHGGGGSSSSSCEEEEEEEECC-
T ss_pred ------CCCeEEEeecccceecCHHHHHhhhCCCCCceEEEEEEEecC
Confidence 4889999999999999999998765 9999999986
No 7
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=100.00 E-value=2e-60 Score=560.98 Aligned_cols=315 Identities=30% Similarity=0.567 Sum_probs=264.8
Q ss_pred ccccccccccCCCccchHHHHHHHhcChHHHHHHHhccc-cccccCCCCCCchHHHHHHHHHHHHhcCCCC---------
Q 002138 335 CLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQ-KEINYENPLGLNGELALAFGDLLRKLWAPGG--------- 404 (960)
Q Consensus 335 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~-~~~~~~n~~~~~~~l~~al~~L~~~l~~~~~--------- 404 (960)
..+|++||.|+||||||||+||||+|+|+|+++|+...+ ......+ ...++.++|..++..||....
T Consensus 137 ~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~---~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~ 213 (476)
T 3mhs_A 137 RRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRS---PDKCFSCALDKIVHELYGALNTKQASSSST 213 (476)
T ss_dssp GTTCCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHCSSCC---TTTCHHHHHHHHHHHHHSCCCC--------
T ss_pred CCCCCCCCCcCCccHHHHHHHHHHhCCHHHHHHHHhcchhhhccCCC---cccchHHHHHHHHHHHhhcccccccccccc
Confidence 468999999999999999999999999999999985422 1222222 245689999999999987432
Q ss_pred CccChHHHHHHH---hhcCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCC
Q 002138 405 IPVAPRMFKLKL---ANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARND 481 (960)
Q Consensus 405 ~~i~P~~f~~~l---~~~~~~F~~~~QQDA~EfL~~LLd~L~eel~~~~~kp~~e~~d~~~~~~~~~a~e~w~~~~~~n~ 481 (960)
..+.|..++..+ ++.++.|.+++||||||||.+||+.||++++....+. .+.+......+.
T Consensus 214 ~~~~~~~~~~~l~~~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~~~~~~~~~----------------~~~~~~~~~~~~ 277 (476)
T 3mhs_A 214 STNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNA----------------KEVSRANNKQCE 277 (476)
T ss_dssp CCCSCHHHHHHHHHHHHHCGGGSSSSCEEHHHHHHHHHHHHHHHHHHHCCC-----------------------CCCSCC
T ss_pred cccCcchHHHHHHHHHHhccccCCCCCcCHHHHHHHHHHHHHHHHhhccccc----------------ccccccccccCC
Confidence 246677666655 4889999999999999999999999999987644321 112333345567
Q ss_pred CccccccceEEEEEEeeCCCCCeee-eecCCeeEEecCCCCCccceEEEEEccCCCCCCcceeEEeCCCCchHHHHHHHH
Q 002138 482 SIIVDLCQGQYRSMLVCPVCNKVSV-TFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALS 560 (960)
Q Consensus 482 SiI~~lF~G~~~s~l~C~~C~~~S~-~~epf~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~ 560 (960)
++|.++|+|+++++++|..|+++|. ++|||++|+|+||..
T Consensus 278 s~i~~~F~G~l~~~~~C~~C~~~s~~~~e~f~~LsL~i~~~--------------------------------------- 318 (476)
T 3mhs_A 278 CIVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKDK--------------------------------------- 318 (476)
T ss_dssp SHHHHHSCEEEEEEEECTTTCCCCEEEEEEESCEEECCTTC---------------------------------------
T ss_pred CcceeecceEEEEEEEECCCCCeeCCcccchhhhccchhhh---------------------------------------
Confidence 8999999999999999999999975 599999999998621
Q ss_pred hhcccCCccceeeeeeeccceeeecCCCccccccccCCCcEEEEEcCCCCCCCceEEeeeeccccccccccccccceeec
Q 002138 561 TKCFLRNHEKLLVAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFG 640 (960)
Q Consensus 561 ~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~I~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg 640 (960)
T Consensus 319 -------------------------------------------------------------------------------- 318 (476)
T 3mhs_A 319 -------------------------------------------------------------------------------- 318 (476)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEecCCCCChhHHHHHHHHhcCCCcCCCCCCCCcccccccCCCCCCccccccccccCCCCCCCCCCcCCCCCCCCCC
Q 002138 641 TPLVGRLSDLTNGSDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDD 720 (960)
Q Consensus 641 ~P~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (960)
T Consensus 319 -------------------------------------------------------------------------------- 318 (476)
T 3mhs_A 319 -------------------------------------------------------------------------------- 318 (476)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEecCCCCcccccCCCCCcCCCCCCeEEEEecChhhHHhhhhhhhhhhhhhcccccccCCCCCCCCHHHHHHHhhCc
Q 002138 721 FQFYRLDSIRPTEIKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKE 800 (960)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~dCL~~f~~~ 800 (960)
.+|++||+.|+++
T Consensus 319 -------------------------------------------------------------------~sl~~~L~~~~~~ 331 (476)
T 3mhs_A 319 -------------------------------------------------------------------KKLYECLDSFHKK 331 (476)
T ss_dssp -------------------------------------------------------------------CBHHHHHHHHHCC
T ss_pred -------------------------------------------------------------------hHHHHHHHHhcCh
Confidence 2689999999999
Q ss_pred cccCCCCCCCCccccCcceeEEEEEeeeCCCeEEEEEEeeEecc-cccccCCeeeeccCCCCCCCCccccCCC-------
Q 002138 801 EPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSR-YFKSKLDTYVDFPIDDLDLSNYVCCKNS------- 872 (960)
Q Consensus 801 E~L~~~d~wyC~~Ck~~~~AtKk~~l~~lP~iLiIhLKRF~~~~-~~~~Ki~~~V~FPi~~LDls~~v~~~~~------- 872 (960)
|.|++++ |+|++|+.++.|+|++.|+++|+||+||||||.|+. +...|+++.|.|| ..|||++|+.....
T Consensus 332 E~l~~~~-~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~K~~~~V~fP-~~Ldl~~~~~~~~~~~~~~~~ 409 (476)
T 3mhs_A 332 EQLKDFN-YHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFP-TYLNMKNYCSTKEKDKHSENG 409 (476)
T ss_dssp EECSSCC-CEETTTTEECCCEEEEEEEEBCSEEEEEECCEEECTTSCEEECCCCCBCC-SEEECGGGBSCCBCCC--CCC
T ss_pred hhccCCC-CcCCccCCcccEEEEEEcccCCcceEEEeeeccccCCCCeEECCEEEcCC-CeeechhhcCccccccccccc
Confidence 9998654 999999999999999999999999999999999874 4578999999999 59999999975432
Q ss_pred -CCCccEEEEEEEEeecCCCCCeEEEEEeccccchhhhhhhhhccccccccCCCcEEEEcCCcceecCcccccCCCeEEE
Q 002138 873 -QLSNRYVLYAISNHYGGMGGGHYTAFVDIDYHSAFKQYEYLKTQITSVQLGHKRWFEFDDDRVYPVSEDNIKTSAAYVL 951 (960)
Q Consensus 873 -~~~~~YdL~AVinH~G~l~gGHYtAy~k~~~~~~~~~~~~~~~~~~~~~~~~~~Wy~fdDs~Vs~vs~~~v~s~~AYvL 951 (960)
..+..|+|+|||+|.|++++|||+||+|. .+++||.|||+.|+++++++|.++.||||
T Consensus 410 ~~~~~~Y~L~avv~H~G~~~~GHY~a~vr~---------------------~~~~W~~fnD~~V~~v~~~~v~~~~aYiL 468 (476)
T 3mhs_A 410 KVPDIIYELIGIVSHKGTVNEGHYIAFCKI---------------------SGGQWFKFNDSMVSSISQEEVLKEQAYLL 468 (476)
T ss_dssp BCCCEEEEEEEEEEEEECSSSEEEEEEEEC---------------------TTSCEEEEETTEEEEECHHHHTTSCEEEE
T ss_pred CCCCCcEEEEEEEEeCCCCCCCceEEEEEC---------------------CCCcEEEEeCCceEECCHHHhccCCcEEE
Confidence 24678999999999999999999999997 57899999999999999999999999999
Q ss_pred EEEEec
Q 002138 952 FYKRVS 957 (960)
Q Consensus 952 FY~R~~ 957 (960)
||+|++
T Consensus 469 fY~r~~ 474 (476)
T 3mhs_A 469 FYTIRQ 474 (476)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 999986
No 8
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=100.00 E-value=8.9e-60 Score=560.98 Aligned_cols=298 Identities=23% Similarity=0.398 Sum_probs=258.1
Q ss_pred ccccccccccCCCccchHHHHHHHhcChHHHHHHHhccccccccCCCCCCchHHHHHHHHHHHHhcCCCCCccChHHHHH
Q 002138 335 CLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKL 414 (960)
Q Consensus 335 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~al~~L~~~l~~~~~~~i~P~~f~~ 414 (960)
..+|++||.|+||||||||+||||+++|+|+++++..... ......++..+|+.||..|+.+. .++.|..|..
T Consensus 171 ~~~g~~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~~------~~~~~~~~~~~l~~lf~~l~~~~-~~~~~~~l~~ 243 (522)
T 2f1z_A 171 KHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTE------GDDSSKSVPLALQRVFYELQHSD-KPVGTKKLTK 243 (522)
T ss_dssp TTTSCCCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCCC------SSCTTTCHHHHHHHHHHHHHHCS-SCBCCTTHHH
T ss_pred ccCCccceecCcccHHHHHHHHHHhccHHHHHHHhhcccc------CCcccchHHHHHHHHHHHHhcCC-CccCcHHHHh
Confidence 4678999999999999999999999999999998743111 01123468899999999998754 6789999987
Q ss_pred HHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCccccccceEEEE
Q 002138 415 KLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRS 494 (960)
Q Consensus 415 ~l~~~~~~F~~~~QQDA~EfL~~LLd~L~eel~~~~~kp~~e~~d~~~~~~~~~a~e~w~~~~~~n~SiI~~lF~G~~~s 494 (960)
.++ .+.|.+++||||||||.+||+.||++++.. ...++|.++|+|++++
T Consensus 244 ~~~--~~~~~~~~QqDa~Efl~~LLd~L~~~l~~~-----------------------------~~~s~i~~lF~G~~~s 292 (522)
T 2f1z_A 244 SFG--WETLDSFMQHDVQELCRVLLDNVENKMKGT-----------------------------CVEGTIPKLFRGKMVS 292 (522)
T ss_dssp HTC--CCTTTSSTTSCHHHHHHHHHHHHHHHHTTS-----------------------------TTTTHHHHHHCEEEEE
T ss_pred hcC--CccCCCcccccHHHHHHHHHHHHHhhccCC-----------------------------ccccchhhheeEEEEE
Confidence 775 378999999999999999999999988531 1346899999999999
Q ss_pred EEeeCCCCCeeeeecCCeeEEecCCCCCccceEEEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhcccCCccceeee
Q 002138 495 MLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVA 574 (960)
Q Consensus 495 ~l~C~~C~~~S~~~epf~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~ 574 (960)
+++|..|++.|.++|+|++|+|+||..
T Consensus 293 ~i~C~~C~~~s~~~e~f~~LsL~i~~~----------------------------------------------------- 319 (522)
T 2f1z_A 293 YIQCKEVDYRSDRREDYYDIQLSIKGK----------------------------------------------------- 319 (522)
T ss_dssp EECCSSSCCCCCEEEEESCEEECCTTC-----------------------------------------------------
T ss_pred EEEcCCCCceeeeeeeeEEEEEEeCCc-----------------------------------------------------
Confidence 999999999999999999999998621
Q ss_pred eeeccceeeecCCCccccccccCCCcEEEEEcCCCCCCCceEEeeeeccccccccccccccceeeccceEEecCCCCChh
Q 002138 575 EIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNGS 654 (960)
Q Consensus 575 e~~~~~~~~~~~~~~~~~~~I~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~ 654 (960)
T Consensus 320 -------------------------------------------------------------------------------- 319 (522)
T 2f1z_A 320 -------------------------------------------------------------------------------- 319 (522)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCCCcCCCCCCCCcccccccCCCCCCccccccccccCCCCCCCCCCcCCCCCCCCCCceEEEecCCCCccc
Q 002138 655 DIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTEI 734 (960)
Q Consensus 655 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (960)
T Consensus 320 -------------------------------------------------------------------------------- 319 (522)
T 2f1z_A 320 -------------------------------------------------------------------------------- 319 (522)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCcCCCCCCeEEEEecChhhHHhhhhhhhhhhhhhcccccccCCCCCCCCHHHHHHHhhCccccCCCCCCCCccc
Q 002138 735 KMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPRC 814 (960)
Q Consensus 735 ~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~dCL~~f~~~E~L~~~d~wyC~~C 814 (960)
.+|.+||+.|+.+|.|+++++|+|++|
T Consensus 320 -----------------------------------------------------~~l~~~L~~~~~~E~l~~~n~~~C~~c 346 (522)
T 2f1z_A 320 -----------------------------------------------------KNIFESFVDYVAVEQLDGDNKYDAGEH 346 (522)
T ss_dssp -----------------------------------------------------CBHHHHHHHHTCEEEECTTSCBCCGGG
T ss_pred -----------------------------------------------------ccchHHHHHhhceeecCCcceeecCcC
Confidence 157899999999999999999999999
Q ss_pred cCcceeEEEEEeeeCCCeEEEEEEeeEecc--cccccCCeeeeccCCCCCCCCccccCCCCCCccEEEEEEEEeecCCCC
Q 002138 815 KKHWQASKKLDLWRSPDILVIHLKRFSFSR--YFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYGGMGG 892 (960)
Q Consensus 815 k~~~~AtKk~~l~~lP~iLiIhLKRF~~~~--~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~AVinH~G~l~g 892 (960)
+ ++.|+|++.|+++|+||+||||||.|+. ....|+++.|.|| ..|||++|+.......+..|+|+|||+|.|++++
T Consensus 347 ~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fp-~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~~~~ 424 (522)
T 2f1z_A 347 G-LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFP-EQLPLDEFLQKTDPKDPANYILHAVLVHSGDNHG 424 (522)
T ss_dssp C-SBCEEEEEEESCCCSEEEEEECCEEECSSSSCEEECCCCCBCC-SEEECGGGBSSCCTTSCCEEEEEEEEEEECSSSC
T ss_pred C-ccceEEEEEeecCCceEEEEEEeEEEcccCCcceEcCcEEeCC-CeecchhhhccccCCCCcEEEEEEEEEecccCCC
Confidence 5 6899999999999999999999999985 4578999999999 5999999998655446789999999999999999
Q ss_pred CeEEEEEeccccchhhhhhhhhccccccccCCCcEEEEcCCcceecCcccccC---------------CCeEEEEEEEec
Q 002138 893 GHYTAFVDIDYHSAFKQYEYLKTQITSVQLGHKRWFEFDDDRVYPVSEDNIKT---------------SAAYVLFYKRVS 957 (960)
Q Consensus 893 GHYtAy~k~~~~~~~~~~~~~~~~~~~~~~~~~~Wy~fdDs~Vs~vs~~~v~s---------------~~AYvLFY~R~~ 957 (960)
|||+||+|+ ..+++||+|||+.|+++++++|.. .+||||||+|++
T Consensus 425 GHY~a~v~~--------------------~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~~~~aYiLfY~r~~ 484 (522)
T 2f1z_A 425 GHYVVYLNP--------------------KGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRES 484 (522)
T ss_dssp SEEEEEECT--------------------TSSSCCEEEETTEEEECCHHHHSTTSSCCC--------CEEEEEEEEEETT
T ss_pred ceEEEEEec--------------------CCCCCEEEEECceeEECCHHHHHHhhcCCCccccccCcCCceEEEEEEECC
Confidence 999999997 568999999999999999888763 679999999987
Q ss_pred C
Q 002138 958 D 958 (960)
Q Consensus 958 ~ 958 (960)
.
T Consensus 485 ~ 485 (522)
T 2f1z_A 485 K 485 (522)
T ss_dssp S
T ss_pred c
Confidence 4
No 9
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=100.00 E-value=2.3e-59 Score=542.41 Aligned_cols=299 Identities=23% Similarity=0.342 Sum_probs=249.5
Q ss_pred cccccccccccCCCccchHHHHHHHhcChHHHHHHHhccccccccCCCCC----CchHHHHHHHHHHHHhcCCCCCccCh
Q 002138 334 VCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLG----LNGELALAFGDLLRKLWAPGGIPVAP 409 (960)
Q Consensus 334 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~----~~~~l~~al~~L~~~l~~~~~~~i~P 409 (960)
....+++||.|+||||||||+||||+++|+|+++|+..... .+..++.+ ...+++.+|+.||..||.+...+++|
T Consensus 19 ~~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~-~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~v~p 97 (415)
T 1vjv_A 19 QFAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPS-QGVSNSGAQDEEIHKQIVIEMKRCFENLQNKSFKSVLP 97 (415)
T ss_dssp CCCCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGG-GCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC-CCEECC
T ss_pred ccCCCCCCCEeCCcccHHHHHHHHHHcCHHHHHHHHhcccc-cccCCcccccccchhHHHHHHHHHHHHHhcCCCCccCH
Confidence 44678999999999999999999999999999999864221 12222211 24689999999999999888789999
Q ss_pred HHHHHHHhhcCCCCC-------CCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCC
Q 002138 410 RMFKLKLANFAPQFS-------GYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDS 482 (960)
Q Consensus 410 ~~f~~~l~~~~~~F~-------~~~QQDA~EfL~~LLd~L~eel~~~~~kp~~e~~d~~~~~~~~~a~e~w~~~~~~n~S 482 (960)
..|+.+++...|.|. +++||||||||.+||+.||++++. +
T Consensus 98 ~~~~~~l~~~~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~~---------------------------------~ 144 (415)
T 1vjv_A 98 VVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD---------------------------------K 144 (415)
T ss_dssp HHHHHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH---------------------------------H
T ss_pred HHHHHHHHHhCchhhccccCCCCccccCHHHHHHHHHHHHHHHhcc---------------------------------c
Confidence 999999999999998 899999999999999999998842 5
Q ss_pred ccccccceEEEEEEeeCCCCCee--eeecCCeeEEecCCCCCccceEEEEEccCCCCCCcceeEEeCCCCchHHHHHHHH
Q 002138 483 IIVDLCQGQYRSMLVCPVCNKVS--VTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALS 560 (960)
Q Consensus 483 iI~~lF~G~~~s~l~C~~C~~~S--~~~epf~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~ 560 (960)
+|.++|+ +++++++|..|++++ .++|+|++|+|+||..
T Consensus 145 ~i~~~F~-~~~~~~~C~~C~~~s~s~~~e~f~~Lsl~i~~~--------------------------------------- 184 (415)
T 1vjv_A 145 FSEDFRI-QFKTTIKDTANDNDITVKENESDSKLQCHISGT--------------------------------------- 184 (415)
T ss_dssp HHTTTCE-EEEEEEEETTEEEEEEEECCCEESCEEECCCTT---------------------------------------
T ss_pred hHHHHHH-hheEEEEECCCCCCccccccccceeeeeccccc---------------------------------------
Confidence 6999999 999999999999997 5999999999998731
Q ss_pred hhcccCCccceeeeeeeccceeeecCCCccccccccCCCcEEEEEcCCCCCCCceEEeeeeccccccccccccccceeec
Q 002138 561 TKCFLRNHEKLLVAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFG 640 (960)
Q Consensus 561 ~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~I~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg 640 (960)
T Consensus 185 -------------------------------------------------------------------------------- 184 (415)
T 1vjv_A 185 -------------------------------------------------------------------------------- 184 (415)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEecCCCCChhHHHHHHHHhcCCCcCCCCCCCCcccccccCCCCCCccccccccccCCCCCCCCCCcCCCCCCCCCC
Q 002138 641 TPLVGRLSDLTNGSDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDD 720 (960)
Q Consensus 641 ~P~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (960)
T Consensus 185 -------------------------------------------------------------------------------- 184 (415)
T 1vjv_A 185 -------------------------------------------------------------------------------- 184 (415)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEecCCCCcccccCCCCCcCCCCCCeEEEEecChhhHHhhhhhhhhhhhhhcccccccCCCCCCCCHHHHHHHhhCc
Q 002138 721 FQFYRLDSIRPTEIKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKE 800 (960)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~isL~dCL~~f~~~ 800 (960)
..+|++||+.|+.+
T Consensus 185 ------------------------------------------------------------------~~~l~~~L~~~~~e 198 (415)
T 1vjv_A 185 ------------------------------------------------------------------TNFMRNGLLEGLNE 198 (415)
T ss_dssp ------------------------------------------------------------------CCBHHHHHHHHHEE
T ss_pred ------------------------------------------------------------------cchHHHHHHHHhhh
Confidence 01688999999975
Q ss_pred cccCCCCCCCCccccCcceeEEEEEeeeCCCeEEEEEEeeEeccc--ccccCCeeeeccCCCCCCCCccccC--------
Q 002138 801 EPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRY--FKSKLDTYVDFPIDDLDLSNYVCCK-------- 870 (960)
Q Consensus 801 E~L~~~d~wyC~~Ck~~~~AtKk~~l~~lP~iLiIhLKRF~~~~~--~~~Ki~~~V~FPi~~LDls~~v~~~-------- 870 (960)
| +. |+|+.|+..+.|+|++.|+++|+||+||||||.|+.. .+.|+.+.|.|| ..|||++|+...
T Consensus 199 ~-i~----~~c~~c~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~V~FP-~~Ldl~~~~~~~~~~~~~~~ 272 (415)
T 1vjv_A 199 K-IE----KRSDLTGANSIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKVVFP-FQLDVADMLTPEYAAEKVKV 272 (415)
T ss_dssp C--------------CCCCEEEEEEEEECBSEEEEEECCEEEETTTTEEEECCCCCBCC-SEEECGGGBCHHHHHHHHHH
T ss_pred h-hh----hcccccCCcccEEEEEEcccCCCeeEEEEEEEEEeCCCCcchhhcCccCCC-cEeEhHHhcChhhhhhhhhh
Confidence 4 42 8999999999999999999999999999999999854 568999999999 599999998631
Q ss_pred ------------------------------------------------------------------CCCCCccEEEEEEE
Q 002138 871 ------------------------------------------------------------------NSQLSNRYVLYAIS 884 (960)
Q Consensus 871 ------------------------------------------------------------------~~~~~~~YdL~AVi 884 (960)
....+..|+|+|||
T Consensus 273 r~~~~~~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv 352 (415)
T 1vjv_A 273 RDELRKVEKEKNEKEREIKRRKFDPSSSENVMTPREQYETQVALNESEKDQWLEEYKKHFPPNLEKGENPSCVYNLIGVI 352 (415)
T ss_dssp HHHHHHHHHHHHHC----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCTTBCSSSEEEEEEEE
T ss_pred HHHHHHHhhhhhhhhhhhhhccccccccccccccchhhhhchhhHHhhhhhhhhhcccccccccccccCCCceEEEEEEE
Confidence 01245789999999
Q ss_pred Eeec-CCCCCeEEEEEeccccchhhhhhhhhccccccccCCCcEEEEcCCcceecCcccccCCC-------eEEEEEEEe
Q 002138 885 NHYG-GMGGGHYTAFVDIDYHSAFKQYEYLKTQITSVQLGHKRWFEFDDDRVYPVSEDNIKTSA-------AYVLFYKRV 956 (960)
Q Consensus 885 nH~G-~l~gGHYtAy~k~~~~~~~~~~~~~~~~~~~~~~~~~~Wy~fdDs~Vs~vs~~~v~s~~-------AYvLFY~R~ 956 (960)
+|.| ++++|||+||+|++ ..+++||+|||+.|+++++++|.... ||||||+|+
T Consensus 353 ~H~G~s~~~GHY~a~vr~~-------------------~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~aYiLfY~r~ 413 (415)
T 1vjv_A 353 THQGANSESGHYQAFIRDE-------------------LDENKWYKFNDDKVSVVEKEKIESLAGGGESDSALILMYKGF 413 (415)
T ss_dssp EEESSSTTSSEEEEEEECS-------------------SCTTCEEEEETTEEEEECHHHHHGGGCCTTSCEEEEEEEEET
T ss_pred EecCCCCCCCCEEEEEeCC-------------------CCCCcEEEeECCcCeEcCHHHHhhhcCCCCcceEEEEEEEec
Confidence 9999 89999999999961 35889999999999999999998765 999999997
Q ss_pred c
Q 002138 957 S 957 (960)
Q Consensus 957 ~ 957 (960)
+
T Consensus 414 ~ 414 (415)
T 1vjv_A 414 G 414 (415)
T ss_dssp T
T ss_pred C
Confidence 5
No 10
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=100.00 E-value=9e-58 Score=566.42 Aligned_cols=156 Identities=26% Similarity=0.407 Sum_probs=135.3
Q ss_pred ccccccccccccCCCccchHHHHHHHhcChHHHHHHHhccccccccCCCCCCchHHHHHHHHHHHHhcCCC---------
Q 002138 333 GVCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPG--------- 403 (960)
Q Consensus 333 ~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~al~~L~~~l~~~~--------- 403 (960)
....+|++||.|+||||||||+||||+++|+|+++|+..... ....++.....++..+|+.|+..||++.
T Consensus 338 p~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~-~~~~~~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~~~ 416 (854)
T 3ihp_A 338 PLFGPGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEK-IFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESG 416 (854)
T ss_dssp CCCSTTCCCBCCCSSCHHHHHHHHHHTTSHHHHHHHTTTHHH-HHHHCCSCGGGCHHHHHHHHHHHHHSCC---------
T ss_pred cccCCCccceEecCCceehhHHHHHHhCcHHHHHHHHhhhhh-hhccccCCccccHHHHHHHHHHHHhcccccccccccc
Confidence 345789999999999999999999999999999999853221 1122444566789999999999999743
Q ss_pred -----------CCccChHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHH
Q 002138 404 -----------GIPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEY 472 (960)
Q Consensus 404 -----------~~~i~P~~f~~~l~~~~~~F~~~~QQDA~EfL~~LLd~L~eel~~~~~kp~~e~~d~~~~~~~~~a~e~ 472 (960)
..+++|..|+.++++.++.|.+++||||||||.+||+.||++++.
T Consensus 417 ~~~~~~~~~~~~~~isP~~f~~~l~~~~~~F~~~~QQDA~EFl~~LLd~L~~el~~------------------------ 472 (854)
T 3ihp_A 417 DGERVPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLINMVERNCRS------------------------ 472 (854)
T ss_dssp ------------CCBCCHHHHHHHTTTCTTTTSSSCCBHHHHHHHHHHHHHHTCTT------------------------
T ss_pred ccccccccccCCCccChHHHHHHHhhhccccccccccCHHHHHHHHHHHHHHHhcc------------------------
Confidence 348999999999999999999999999999999999999998732
Q ss_pred HHhhhccCCCccccccceEEEEEEeeCCCCCeeeeecCCeeEEecCCCC
Q 002138 473 WRNHRARNDSIIVDLCQGQYRSMLVCPVCNKVSVTFDPLMYLSLPIPST 521 (960)
Q Consensus 473 w~~~~~~n~SiI~~lF~G~~~s~l~C~~C~~~S~~~epf~~LsL~iP~~ 521 (960)
.++|.++|+|+++++++|..|++++.++++|++|+|+||..
T Consensus 473 --------~s~i~~lF~G~l~s~i~C~~C~~vs~t~e~F~~LsL~Ip~~ 513 (854)
T 3ihp_A 473 --------SENPNEVFRFLVEEKIKCLATEKVKYTQRVDYIMQLPVPMD 513 (854)
T ss_dssp --------SCCGGGGTCEEEEEEEEETTTTEEEEEEEEESEEEECCCGG
T ss_pred --------cCCchhhcCceEEEEEEecCCCCEeEEeeeceEEEeeCCcc
Confidence 35699999999999999999999999999999999999954
No 11
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=100.00 E-value=5.4e-37 Score=324.53 Aligned_cols=186 Identities=20% Similarity=0.240 Sum_probs=167.0
Q ss_pred CCCCCEEEEEcchhHHHHHHhhccccC-----CcccCCCCCCCChhhhhhhhcccccCCCCCcccCCCccCCCeEEcCHH
Q 002138 91 DDDRQKVYLVPYRWWKESQILLAEKVG-----GVLYEVLSNDDNTDLEILLHLKKKEGSVDSDCGEGGVSVREYALVPEG 165 (960)
Q Consensus 91 ~~~~~~~ylv~~~W~~~w~~~v~~~~~-----g~~~~~pg~IdNs~L~~~~~~~~~~~~~~~~l~~~l~e~~Dy~~Vp~~ 165 (960)
...|+.||||+++||++|+.||+.+.+ +.+...||||||++|+ . +.+...||++|.++.||++||++
T Consensus 30 l~~Gd~~YlIs~~W~~~w~~~v~~~~~~~~~~~~~~~~pGPIDNs~L~--~------~~~~~~Lk~~l~e~~Dy~~vp~~ 101 (231)
T 3jyu_A 30 LQRGAQWYLIDSRWFKQWKKYVGFDSWDMYNVGEHNLFPGPIDNSGLF--S------DPESQTLKEHLIDELDYVLVPAE 101 (231)
T ss_dssp CCTTCEEEEEEHHHHHHHHHHHTSSSCCTTTTTCGGGCCCSBCCGGGE--E------ETTTTEECSSCCBTTTEEEEEHH
T ss_pred CCCCCEEEEEchHHHHHHHHHhcccccccccccccCCCCCcEehHHHh--C------cCCCcccccccccCCCEEEECHH
Confidence 378999999999999999999987642 4566789999999999 2 12357899999999999999999
Q ss_pred HHHHHHHHcC---CCCce---eeccCCCCCCCCceeeeeEEEEeeecC-CCeEEEEEccCCcHHHHHHHHHHHcCCCCC-
Q 002138 166 MWLRALKWHN---DSKAA---VKDFGSSFAADEQDVFPLQIRLSVSQE-TNSLLVKISLEDNKVDLYKRACNLFISVSE- 237 (960)
Q Consensus 166 ~w~~l~~wYG---g~p~i---vi~~g~~~~~~~vEvyPl~l~l~~~~~-~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e- 237 (960)
+|++|++||| |||+| ||..+...+.+.||+||++|+++.+++ .+..++.||+.+|+.+|++++|++|+|+.+
T Consensus 102 vW~~l~~wYG~~~gg~~I~R~vi~~~~~~~~~~vEvyP~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~ 181 (231)
T 3jyu_A 102 AWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAER 181 (231)
T ss_dssp HHHHHHHHHCBCTTCCCCEEEEEEECSSSCEEEECCSCEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHTTCCTTS
T ss_pred HHHHHHHHhCCCCCCCceEEEEeccCCCCCcceEEEecceEEEEecCCCCceEEEEecccCcHHHHHHHHHHHhCCCCCC
Confidence 9999999999 78888 887776678899999999999999876 456789999999999999999999999987
Q ss_pred ceEEEEecCCccccccccccccccccccCCCCEEEEEEe-ecCcccCc
Q 002138 238 MLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ-VHGFSDSV 284 (960)
Q Consensus 238 ~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k-~~g~w~~~ 284 (960)
++|||++++++++.+|++.+.||++++|.++|.|+||++ .||+||++
T Consensus 182 ~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~dg~WP~~ 229 (231)
T 3jyu_A 182 ETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDGTWPRQ 229 (231)
T ss_dssp CEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTTSCCCC-
T ss_pred eEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCCCCCCcc
Confidence 799999999999999999999999999999999999999 78999975
No 12
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=100.00 E-value=1.5e-36 Score=318.28 Aligned_cols=183 Identities=17% Similarity=0.197 Sum_probs=161.1
Q ss_pred CCCCCEEEEEcchhHHHHHHhhccccC-----CcccCCCCCCCChhhhhhhhcccccCCCCCcccCCCccCCCeEEcCHH
Q 002138 91 DDDRQKVYLVPYRWWKESQILLAEKVG-----GVLYEVLSNDDNTDLEILLHLKKKEGSVDSDCGEGGVSVREYALVPEG 165 (960)
Q Consensus 91 ~~~~~~~ylv~~~W~~~w~~~v~~~~~-----g~~~~~pg~IdNs~L~~~~~~~~~~~~~~~~l~~~l~e~~Dy~~Vp~~ 165 (960)
..+|+.||||+++||++|++||+.+.+ |.....||||||++|+ . +.+...||++|.++.||++||++
T Consensus 21 l~~Gd~~YlIs~~W~~~w~~~v~~~~~~~~~~~~~~~~pGpIdNs~L~--~------~~~~~~Lk~~l~e~~Dy~~vp~~ 92 (217)
T 4a3p_A 21 LRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQNVYPGPIDNSGLL--K------DGDAQSLKEHLIDELDYILLPTE 92 (217)
T ss_dssp CCTTCEEEEEEHHHHHHHHHHHTCSTTCCTTTTCGGGCCCSBCCGGGB--C------CC---CBCSSCCBTTTEEEEEHH
T ss_pred CCCCCEEEEEchHHHHHHHHHhcccccccccccccCCCCCcEehHHhh--C------CCCCcccCcCcccCCCEEEECHH
Confidence 488999999999999999999987642 5566789999999999 2 33467999999999999999999
Q ss_pred HHHHHHHHcC---CCCce---eeccCCCCCCCCceeeeeEEEEeeecCC-CeEEEEEccCCcHHHHHHHHHHHcCCCCC-
Q 002138 166 MWLRALKWHN---DSKAA---VKDFGSSFAADEQDVFPLQIRLSVSQET-NSLLVKISLEDNKVDLYKRACNLFISVSE- 237 (960)
Q Consensus 166 ~w~~l~~wYG---g~p~i---vi~~g~~~~~~~vEvyPl~l~l~~~~~~-~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e- 237 (960)
+|++|++||| |||+| ||..+.. +.||+||+.|+++.+++. ...++.||+.+|+.+|+++||++|+|+.+
T Consensus 93 vW~~l~~wYG~~~ggp~I~R~vi~~~~~---~~vEvyP~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~ 169 (217)
T 4a3p_A 93 GWNKLVSWYTLMEGQEPIARKVVEQGMF---CKVEVYLTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEK 169 (217)
T ss_dssp HHHHHHHHHCBCTTCCCCEEEEEEETTE---EEECCSCEEEEEEETTEEEEEEEEEECTTSBHHHHHHHHHHHTTCCTTS
T ss_pred HHHHHHHHhCCCCCCCCcceeEEecCCe---eEEEEeccEEEEEecCCCCcceEEEEcccchHHHHHHHHHHHhCCCCCC
Confidence 9999999999 88888 7766542 899999999999988763 56789999999999999999999999986
Q ss_pred ceEEEEecCCccccccccccccccccccCCCCEEEEEEe-ecCcccCc
Q 002138 238 MLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ-VHGFSDSV 284 (960)
Q Consensus 238 ~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k-~~g~w~~~ 284 (960)
++|||++++.++..+|++.++||++++|.+||.|+||++ .||+||++
T Consensus 170 ~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~dg~WP~~ 217 (217)
T 4a3p_A 170 ETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDGTWPRG 217 (217)
T ss_dssp CEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCCC-CCCC-
T ss_pred ceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecCCCCCCCC
Confidence 799999998999999999999999999999999999999 79999963
No 13
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=99.93 E-value=2.5e-26 Score=251.96 Aligned_cols=101 Identities=20% Similarity=0.292 Sum_probs=81.2
Q ss_pred cccccccccCCCccchHHHHHHHhcChHHHHHHHhccccccccCCCCCCchHHHHHH-HHHHHHhcCCCCCccChHHHHH
Q 002138 336 LLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAF-GDLLRKLWAPGGIPVAPRMFKL 414 (960)
Q Consensus 336 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~al-~~L~~~l~~~~~~~i~P~~f~~ 414 (960)
...++||.|+||||||||+||||+++|++.+.++.. ....+. ......+..+| .++++.|-. ..+.|..|..
T Consensus 6 ~g~p~GLqNlgNTCYLNSTLq~Lfsipel~d~Ll~~-~~~~~~---~~~~~~l~~~L~r~i~~~Lrk---~~~~P~~~l~ 78 (374)
T 2vhf_A 6 IGKKKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLR-PKEKND---VEYYSETQELLRTEIVNPLRI---YGYVCATKIM 78 (374)
T ss_dssp SEESCEECCCSSCHHHHHHHHHHHSSBGGGHHHHHC-CCCTTS---CTTHHHHHHHHHHTTHHHHHH---TSEECHHHHH
T ss_pred cCCCccccCCCcCcHHHHHHHHHHhchHHHHHHHhC-CCCCCc---chhHHHHHHHHHHHHHHHHhh---cCCCcHHHHH
Confidence 346899999999999999999999999999998753 211111 22234688899 899999954 7899999999
Q ss_pred HHhhcCCCCC-----CCCCCCHHHHHHHHHHHHH
Q 002138 415 KLANFAPQFS-----GYNQHDSQEFLAFLLDGLH 443 (960)
Q Consensus 415 ~l~~~~~~F~-----~~~QQDA~EfL~~LLd~L~ 443 (960)
.|++..|+|. +++||||+||++.||..|.
T Consensus 79 ~LR~~~pQfae~~G~~~~QQDaEE~~t~Ll~~L~ 112 (374)
T 2vhf_A 79 KLRKILEKVEAASGFTSEEKDPEEFLNILFHHIL 112 (374)
T ss_dssp HHHHHHHHHC--------CCCHHHHHHHHHTTTT
T ss_pred HHHHHhHHHhcccCCCccccCHHHHHHHHHHHHh
Confidence 9999999886 4899999999999999775
No 14
>1w6v_A Ubiquitin carboxyl-terminal hydrolase 15; UCH, USP, DUB, deubiquitylation, deubiquitinating enzyme, ubiquitin specific protease; NMR {Homo sapiens} SCOP: d.324.1.1
Probab=99.79 E-value=2.1e-19 Score=174.70 Aligned_cols=82 Identities=18% Similarity=0.233 Sum_probs=70.8
Q ss_pred CCCCCEEEEEcchhHHHHHHhhccccCC-----cccCCCCCCCChhhhhhhhcccccCCCCCcccCCCccCCCeEEcCHH
Q 002138 91 DDDRQKVYLVPYRWWKESQILLAEKVGG-----VLYEVLSNDDNTDLEILLHLKKKEGSVDSDCGEGGVSVREYALVPEG 165 (960)
Q Consensus 91 ~~~~~~~ylv~~~W~~~w~~~v~~~~~g-----~~~~~pg~IdNs~L~~~~~~~~~~~~~~~~l~~~l~e~~Dy~~Vp~~ 165 (960)
...|+.||||+++||++|++||+++..+ .+...||||||++|+ . +.+...||++|++++||++||++
T Consensus 45 l~~gd~~YlIs~~W~~~W~~yv~~~~~~~~~~~~~~~~pGpIDNs~Ll--~------~~~~~~Lk~~L~e~~Dy~lVp~~ 116 (141)
T 1w6v_A 45 LRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQNVYPGPIDNSGLL--K------DGDAQSLKEHLIDELDYILLPTE 116 (141)
T ss_dssp CCTTCEEEEEEHHHHHHHHHHHTCSTTCCSSTTCSTTCCCSBCCTTTB--C------SSCTTCBCSSCCTTTTEEEECHH
T ss_pred CCCCCEEEEECHHHHHHHHHHhcCCccccccccccCCCCCCCcCHHHh--C------cCccccccccccCCCCEEEECHH
Confidence 3789999999999999999999886532 234679999999999 2 22357899999999999999999
Q ss_pred HHHHHHHHcC---CCCce
Q 002138 166 MWLRALKWHN---DSKAA 180 (960)
Q Consensus 166 ~w~~l~~wYG---g~p~i 180 (960)
+|++|++||| |+|+|
T Consensus 117 vW~~L~~wYG~~~ggp~I 134 (141)
T 1w6v_A 117 GWNKLVSWYTLMEGQEPI 134 (141)
T ss_dssp HHHHHHHHSCBCTTCCCC
T ss_pred HHHHHHHHHCCCCCCCce
Confidence 9999999999 78887
No 15
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=99.32 E-value=1.6e-11 Score=144.75 Aligned_cols=296 Identities=20% Similarity=0.195 Sum_probs=210.7
Q ss_pred EEEEccCCcHHHHHHHHHHHcCCCCC-ceEEEEecCCcccccccccccccccc--ccCCCCEEEEEEeecCcccCccCcc
Q 002138 212 LVKISLEDNKVDLYKRACNLFISVSE-MLYIWDFSGQTTQFLMNDRVTMSDDF--SAKPGEEVFLQLQVHGFSDSVGETN 288 (960)
Q Consensus 212 ~~~~Sk~~Ti~eL~~~v~~lf~i~~e-~~RLW~~~~~~~~~lL~d~~~tL~d~--~l~~~q~IllE~k~~g~w~~~~~~~ 288 (960)
.+.+++.+++.+|...+++++++|++ ++++|.-...+....|++.+.|+.++ .|..|+.|..|....+.
T Consensus 150 ~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~~GdII~fQ~~~~~~-------- 221 (530)
T 2ylm_A 150 HIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDGDIIVFQKDDPEN-------- 221 (530)
T ss_dssp EEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCCTTEEEEEEECCGGG--------
T ss_pred EEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhcccCCCEEEEEecCCcc--------
Confidence 47899999999999999999999964 79999866656667788677899999 99999999997652110
Q ss_pred ccccccccccccccCCcccccCCCCCCCcccccCCccccCCCCCccccccccccccCCCccchHHHHHHHhcChHHHHHH
Q 002138 289 DEMAEHYKIIDSICNGSVKINGSNDNLNSYITSSNSVRRGSGNGGVCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYF 368 (960)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~ 368 (960)
..... . .++.+-+++
T Consensus 222 ------~~~~y---~--------------------------------------------------------~v~~yy~~l 236 (530)
T 2ylm_A 222 ------DNSEL---P--------------------------------------------------------TAKEYFRDL 236 (530)
T ss_dssp ------GGSSS---C--------------------------------------------------------SHHHHHHHH
T ss_pred ------ccccC---C--------------------------------------------------------CHHHHHHHH
Confidence 00000 0 000111111
Q ss_pred H---------------hccccccccCCCCCCchHHHHHHHHHHHHhcCCCCCccChHHHHHHHhhcCCCCCCCCCCCHHH
Q 002138 369 L---------------GDYQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKLKLANFAPQFSGYNQHDSQE 433 (960)
Q Consensus 369 l---------------~~~~~~~~~~n~~~~~~~l~~al~~L~~~l~~~~~~~i~P~~f~~~l~~~~~~F~~~~QQDA~E 433 (960)
. ..|.-.++...+ -++++.++++.+.. .|.. | ++.+. ++|+|
T Consensus 237 ~nrv~V~f~~~~~~~~~~F~l~Ls~~~~---Y~~la~~va~~l~~---------dP~~----l-Rf~~~-~~~~~----- 293 (530)
T 2ylm_A 237 YHRVDVIFCDKTIPNDPGFVVTLSNRMN---YFQVAKTVAQRLNT---------DPML----L-QFFKS-QGYRD----- 293 (530)
T ss_dssp HHEEEEEEEETTSTTCCCEEEEEETTCC---HHHHHHHHHHHHTS---------CGGG----E-EEECC-CTTSC-----
T ss_pred hcceEEEEeecCCCCCCCeEEEECCCCC---HHHHHHHHHHHhCC---------Cchh----E-EEEec-ccccC-----
Confidence 1 112233333332 36788887777632 4544 2 34444 45544
Q ss_pred HHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCccccccceEEEEEEeeCCCCCeeeeecCCee
Q 002138 434 FLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVCPVCNKVSVTFDPLMY 513 (960)
Q Consensus 434 fL~~LLd~L~eel~~~~~kp~~e~~d~~~~~~~~~a~e~w~~~~~~n~SiI~~lF~G~~~s~l~C~~C~~~S~~~epf~~ 513 (960)
.|-.. ...++++.+.++|. .+.|+ ++++|++
T Consensus 294 ------------------~p~~~-------------------i~~~~~~~L~d~l~--------~~~~~----~~~~l~Y 324 (530)
T 2ylm_A 294 ------------------GPGNP-------------------LRHNYEGTLRDLLQ--------FFKPR----QPKKLYY 324 (530)
T ss_dssp ------------------SCCSB-------------------CCTTCCSCHHHHST--------TSCSS----SCCEEEE
T ss_pred ------------------CCCCc-------------------cccCCCCcHHHHhh--------cccCC----CCCeEEE
Confidence 11000 11234567888872 24454 4689999
Q ss_pred EEecCCCC---CccceEEEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhcccCC--ccceeeeeeeccceeeecCCC
Q 002138 514 LSLPIPST---TMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRN--HEKLLVAEIYRSKIFRVLDEP 588 (960)
Q Consensus 514 LsL~iP~~---~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~--~~~l~~~e~~~~~~~~~~~~~ 588 (960)
..|+||.. +.+.+.|+++.. ...+.++.+.+||+|++.||++++++..+++. ..++.+.|+++|+|+++|. +
T Consensus 325 evL~ipl~ElE~~r~~kv~w~~~--~~~~~~~~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~-~ 401 (530)
T 2ylm_A 325 QQLKMKITDFENRRSFKCIWLNS--QFREEEITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQ-E 401 (530)
T ss_dssp EECSSCHHHHHSBCCEEEEEECT--TSCEEEEEECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEEC-T
T ss_pred EECCCCHHHHhhCceEEEEEECC--CCceEEEEEEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecC-C
Confidence 99999998 889999998843 44466999999999999999999999999864 6689999999999999999 6
Q ss_pred ccccccccC--CCcEEEEEcCCC-----CCCCceEEeeeeccccccccccccccceeeccceEEecCCCCChhHHHHHHH
Q 002138 589 SDLLGLIRD--EDKLVAYRLPKD-----SETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNGSDIRKLFL 661 (960)
Q Consensus 589 ~~~~~~I~~--~d~i~~ye~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~l~~~~~ 661 (960)
+..++.|.+ ...+.++|+|.+ .++..++++.|...+. ...||+||++.+...-+..++++.+.
T Consensus 402 ~~~i~~i~d~~~~~~rieeip~ee~~~~~~~~~li~V~hf~k~~----------~~~~G~PF~~~v~~gEt~~~~k~Rl~ 471 (530)
T 2ylm_A 402 DELLECLSPATSRTFRIEEIPLDQVDIDKENEMLVTVAHFHKEV----------FGTFGIPFLLRIHQGEHFREVMKRIQ 471 (530)
T ss_dssp TSBGGGSCCCTTCEEEEEECCGGGSSCCTTTEEEEEEEEESSST----------TCEEEEEEEEEEETTCCHHHHHHHHH
T ss_pred CcccccccccccceEEEEECCHHHhccCCCCcEEEEEEEeccCc----------ccccCCCeEEEecCCCcHHHHHHHHH
Confidence 778999988 888999999975 3334577888874332 24799999999977779999999998
Q ss_pred HhcC
Q 002138 662 KLLD 665 (960)
Q Consensus 662 ~~l~ 665 (960)
+++.
T Consensus 472 ~rlg 475 (530)
T 2ylm_A 472 SLLD 475 (530)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 8874
No 16
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=96.53 E-value=0.014 Score=49.93 Aligned_cols=65 Identities=15% Similarity=0.206 Sum_probs=55.5
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEe
Q 002138 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (960)
Q Consensus 206 ~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (960)
.++..+++.++..+||.+|++++....++|++++||.. ....|+| +.+|.+.++..|..|.+-++
T Consensus 12 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~-----~G~~L~d-~~tL~~~~i~~~~~l~l~~r 76 (79)
T 3phx_B 12 NKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF-----EGKPLED-QLPLGEYGLKPLSTVFMNLR 76 (79)
T ss_dssp TTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE-----TTEECCT-TSBGGGGTCCTTCEEEEEEC
T ss_pred CCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEE-----CCEECCC-CCcHHHCCCCCCCEEEEEEe
Confidence 45677889999999999999999999999999999983 2345766 58999999999999888665
No 17
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=96.47 E-value=0.01 Score=53.91 Aligned_cols=77 Identities=14% Similarity=0.217 Sum_probs=54.9
Q ss_pred Cceeee---eEEEEeeecC---CCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCcccccccccccccccccc
Q 002138 192 EQDVFP---LQIRLSVSQE---TNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSA 265 (960)
Q Consensus 192 ~vEvyP---l~l~l~~~~~---~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l 265 (960)
.-+.|| +.+++....- ...+++.+...+||.+|++++.+.+++|++..| |.+.+ .+++| +.||.+.++
T Consensus 14 ~~~~~~~~~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QR-li~gg----kll~D-~~TL~~ygI 87 (105)
T 4dbg_A 14 KPEVSPTQDIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQ-WVIGQ----RLARD-QETLHSHGV 87 (105)
T ss_dssp ------CCCEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEE-EEETT----EEECT-TCBTGGGTC
T ss_pred cCCcCCCCcEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEE-EeccC----eEccC-cCcHHHcCC
Confidence 346677 5555554322 257789999999999999999999999999999 76632 25555 589999999
Q ss_pred -CCCCEEEEE
Q 002138 266 -KPGEEVFLQ 274 (960)
Q Consensus 266 -~~~q~IllE 274 (960)
+.|..+.|=
T Consensus 88 ~~~G~t~hL~ 97 (105)
T 4dbg_A 88 RQNGDSAYLY 97 (105)
T ss_dssp CSTTCEEEEE
T ss_pred CCCCCEEEEE
Confidence 588887763
No 18
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.40 E-value=0.0073 Score=54.82 Aligned_cols=64 Identities=13% Similarity=-0.012 Sum_probs=54.7
Q ss_pred CeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEee
Q 002138 209 NSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQV 277 (960)
Q Consensus 209 ~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~ 277 (960)
..+++.+...+||.+|++++...++++++++||.. .+ ..|.|...+|.+.++..|..|.|..+.
T Consensus 22 ~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~-~g----k~L~D~~~tL~~ygI~~g~~l~l~~~~ 85 (102)
T 1v5o_A 22 VTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVY-ME----QLLTDDHCSLGSYGLKDGDMVVLLQKD 85 (102)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEE-TT----EEECCSSSBHHHHTCCTTEEEEECBCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEE-CC----EECCCCcccHHHCCCCCCCEEEEEECC
Confidence 57789999999999999999999999999999984 22 357766679999999999999886663
No 19
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=96.36 E-value=0.014 Score=52.35 Aligned_cols=65 Identities=14% Similarity=0.125 Sum_probs=52.4
Q ss_pred eEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEE
Q 002138 210 SLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (960)
Q Consensus 210 ~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (960)
..++.+...+||.+|++++...+++|++++||....+......|.+.+++|.+.+++.|..|.|.
T Consensus 29 ~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlv 93 (95)
T 2kjr_A 29 AFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVV 93 (95)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEE
T ss_pred EEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEE
Confidence 67899999999999999999999999999999965322112234344589999999999988773
No 20
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=96.35 E-value=0.018 Score=51.06 Aligned_cols=72 Identities=15% Similarity=0.093 Sum_probs=57.8
Q ss_pred eeeEEEEeee-cCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEE
Q 002138 196 FPLQIRLSVS-QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFL 273 (960)
Q Consensus 196 yPl~l~l~~~-~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Ill 273 (960)
.|..+.+.+. ..+....+.+...+||.+|++++....++|++++||+. . ...|+|. .||.+.+++.|..+-|
T Consensus 18 ~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif-~----Gk~LkD~-~TL~dY~I~dgstLhL 90 (93)
T 3plu_A 18 GSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQK-G----GSVLKDH-ISLEDYEVHDQTNLEL 90 (93)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEE-T----TEECCTT-SBTGGGTCCTTCEEEE
T ss_pred CCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEe-C----CEEccCc-CCHHHcCCCCCCEEEE
Confidence 4455666554 45788899999999999999999999999999999984 2 3457774 7999999999887755
No 21
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.30 E-value=0.021 Score=51.20 Aligned_cols=69 Identities=10% Similarity=0.056 Sum_probs=57.6
Q ss_pred CCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCc--cccccccccccccccccCCCCEEEEEE
Q 002138 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQT--TQFLMNDRVTMSDDFSAKPGEEVFLQL 275 (960)
Q Consensus 207 ~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~--~~~lL~d~~~tL~d~~l~~~q~IllE~ 275 (960)
++......+....||.+|+.++..+|++|+..+||..+.... ....|.+..++|...++..|..|.|+.
T Consensus 21 ~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~d 91 (97)
T 1wjn_A 21 ERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVRW 91 (97)
T ss_dssp SSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEEe
Confidence 356788999999999999999999999999999999764322 233466777999999999999999864
No 22
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=96.26 E-value=0.022 Score=49.93 Aligned_cols=65 Identities=6% Similarity=0.021 Sum_probs=53.4
Q ss_pred CCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCcc--ccccccccccccccccCCCCEEEE
Q 002138 208 TNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTT--QFLMNDRVTMSDDFSAKPGEEVFL 273 (960)
Q Consensus 208 ~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~--~~lL~d~~~tL~d~~l~~~q~Ill 273 (960)
.......|+..+||.+|+.++...+|+|++.+||..+..... ..+++| +++|.+.+++.|..|-|
T Consensus 14 ~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d-~~tL~~Y~i~~g~~ihl 80 (86)
T 4b6w_A 14 MRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMAN-DKQLGYYQCRDEFVIHV 80 (86)
T ss_dssp CCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCT-TSBGGGGTCCTTCEEEE
T ss_pred CeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCC-CCCHHHCCCCCCCEEEE
Confidence 445689999999999999999999999999999997644332 234555 58999999999999854
No 23
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=96.22 E-value=0.018 Score=53.33 Aligned_cols=72 Identities=7% Similarity=0.096 Sum_probs=60.7
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCC-------CCEEEEEEeec
Q 002138 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKP-------GEEVFLQLQVH 278 (960)
Q Consensus 206 ~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~-------~q~IllE~k~~ 278 (960)
+....+.+.+...+||.+|++++....++|+++.||+ +. ..+|+| ++||.+.++.. +..|-|-++.+
T Consensus 9 r~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI-~~----Gk~LeD-~kTL~dy~I~~~ta~~q~~atl~Lvlr~~ 82 (118)
T 4ajy_B 9 RHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLY-KD----DQLLDD-GKTLGECGFTSQTARPQAPATVGLAFRAD 82 (118)
T ss_dssp EBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEE-ET----TEECCT-TSBTTTTTCCGGGSBTTBCEEEEEEECCS
T ss_pred cCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEE-eC----CeECCC-cCCHHHcCCCcCcccCCCCCEEEEEEecC
Confidence 3445677889999999999999999999999999999 43 356766 58999999998 88988988888
Q ss_pred CcccC
Q 002138 279 GFSDS 283 (960)
Q Consensus 279 g~w~~ 283 (960)
|.|..
T Consensus 83 ~~fE~ 87 (118)
T 4ajy_B 83 DTFEA 87 (118)
T ss_dssp SCCCC
T ss_pred CCccc
Confidence 88764
No 24
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=96.21 E-value=0.021 Score=49.45 Aligned_cols=65 Identities=9% Similarity=0.065 Sum_probs=55.4
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEe
Q 002138 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (960)
Q Consensus 206 ~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (960)
.++..+.+.++..+||.+|++++.+.+++|++++||.. . ...|.| +.+|.+.++..+..|.+-++
T Consensus 11 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~-~----g~~L~d-~~tL~~~~i~~~~~l~l~~r 75 (85)
T 3mtn_B 11 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-A----GKQLED-GRTLSDYNIQKWSTLFLLLR 75 (85)
T ss_dssp TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE-T----TEECCT-TSBTGGGTCCTTCEEEEECC
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEE-C----CEECCC-CCCHHHcCCCCCCEEEEEEE
Confidence 34567889999999999999999999999999999983 2 245666 48999999999999998776
No 25
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=96.19 E-value=0.019 Score=50.75 Aligned_cols=65 Identities=8% Similarity=0.035 Sum_probs=54.6
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEe
Q 002138 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (960)
Q Consensus 206 ~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (960)
.++..+.+.++..+||.+|++++.+.++++.+++||.. . ...|.| +.+|.+.++..|..|.+-++
T Consensus 25 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~-~----Gk~L~D-~~tL~~~gi~~g~~i~l~~r 89 (91)
T 3v6c_B 25 LTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-A----GKQLED-GRTLSDYNIQKESTLHLVLR 89 (91)
T ss_dssp TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE-T----TEECCT-TCBTGGGTCCTTCEEEEECC
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEE-C----CeECCC-cCcHHHCCCCCCCEEEEEEe
Confidence 35677889999999999999999999999999999984 2 245666 48999999999999887543
No 26
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=96.16 E-value=0.016 Score=50.12 Aligned_cols=66 Identities=8% Similarity=0.077 Sum_probs=56.0
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEee
Q 002138 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQV 277 (960)
Q Consensus 206 ~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~ 277 (960)
.++..+++.++..+||.+|++++++.+++|++++||+. ....|+| +.+|.+.++..+..|.+-++.
T Consensus 11 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~-----~g~~L~d-~~tL~~~~i~~~~~i~l~~rl 76 (85)
T 3n3k_B 11 LMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-----AGKQLED-GRTLSDYNIHNHSALYLLLKL 76 (85)
T ss_dssp GGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE-----TBEECCT-TCBTTTTTCCTTCEEEEEECC
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE-----CCeECCC-CCCHHHCCCCCCCEEEEEEec
Confidence 34567889999999999999999999999999999994 2245666 479999999999999998773
No 27
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=96.14 E-value=0.015 Score=51.10 Aligned_cols=68 Identities=16% Similarity=0.128 Sum_probs=57.2
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEeecC
Q 002138 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQVHG 279 (960)
Q Consensus 206 ~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~~g 279 (960)
.++..+++.++..+||.+|++++.+..++|++++||.. ....|.| +.+|.+.++..|..|.+-++.-|
T Consensus 8 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~-----~Gk~L~D-~~tL~~~~i~~g~~l~l~~rl~G 75 (88)
T 4fbj_B 8 LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY-----SGKQMND-EKTAADYKILGGSVLHLVLALRG 75 (88)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE-----TTEECCT-TSBTTTTTCCTTCEEEEECBCC-
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEE-----CCeECCC-CCcHHHcCCCCCCEEEEEEECCC
Confidence 45677889999999999999999999999999999984 2345766 58999999999999999877544
No 28
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=96.13 E-value=0.023 Score=47.86 Aligned_cols=66 Identities=8% Similarity=0.052 Sum_probs=55.5
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEee
Q 002138 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQV 277 (960)
Q Consensus 206 ~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~ 277 (960)
.++....+.++..+|+.+|++++.+.+++|++++||.. . ...|.| +.+|.+.++..|..|.+-++.
T Consensus 8 ~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~-~----g~~L~d-~~tL~~~~i~~g~~i~l~~~~ 73 (76)
T 3a9j_A 8 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-A----GKQLED-GRTLSDYNIQRESTLHLVLRL 73 (76)
T ss_dssp TTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE-T----TEECCT-TCBTGGGTCCTTCEEEEEECC
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE-C----CeECCC-CCcHHHcCCCCCCEEEEEEeC
Confidence 34567889999999999999999999999999999984 2 235666 589999999999999887763
No 29
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=96.12 E-value=0.016 Score=50.63 Aligned_cols=65 Identities=17% Similarity=0.100 Sum_probs=55.2
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEe
Q 002138 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (960)
Q Consensus 206 ~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (960)
.++..+++.++..+||.+|++++++..++|++++||.. . ...|.| +.+|.+.++..+..|.+-++
T Consensus 20 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~-~----G~~L~d-~~tL~~~~i~~~~~i~l~~r 84 (88)
T 3dbh_I 20 LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY-S----GKQMND-EKTAADYKILGGSVLHLVLR 84 (88)
T ss_dssp TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE-T----TEECCT-TSBGGGGTCCTTCEEEECCC
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEE-C----CeECCC-CCcHHHcCCCCCCEEEEEEe
Confidence 35677889999999999999999999999999999984 2 345766 58999999999999888655
No 30
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=96.11 E-value=0.023 Score=50.71 Aligned_cols=63 Identities=10% Similarity=0.155 Sum_probs=54.0
Q ss_pred eEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEee
Q 002138 210 SLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQV 277 (960)
Q Consensus 210 ~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~ 277 (960)
..++.++..+||.+|++++....++|++++||. +. ...|+|.+.+|.+.++..|..|.|-++.
T Consensus 26 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~----Gk~L~D~~~tL~~ygI~~gstl~lv~r~ 88 (94)
T 2kan_A 26 QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLY-YS----GIELADDYRNLNEYGITEFSEIVVFLKS 88 (94)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEE-ET----TEEECCTTSBHHHHTCCTTEEEEEEECC
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEE-EC----CEECCCCcccHHHCCCCCCCEEEEEEeC
Confidence 788999999999999999999999999999997 33 2456664379999999999999887774
No 31
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=96.08 E-value=0.018 Score=50.68 Aligned_cols=66 Identities=11% Similarity=0.066 Sum_probs=54.8
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEee
Q 002138 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQV 277 (960)
Q Consensus 206 ~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~ 277 (960)
.++....+.++..+||.+|++++.+.+++|++++||.. . ...|.| +.+|.+.++..|..|.+.++.
T Consensus 17 ~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~-~----Gk~L~D-~~tL~~~gi~~g~~i~l~~r~ 82 (88)
T 1sif_A 17 LTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIF-A----GKQLED-GRTLSDYNIQKESTLHLVLRL 82 (88)
T ss_dssp TTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE-T----TEECCT-TSBSGGGTCCTTCEEEEEC--
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEE-C----CEECCC-CCcHHHcCCCCCCEEEEEEeC
Confidence 44677889999999999999999999999999999983 2 235666 589999999999999987774
No 32
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=96.04 E-value=0.036 Score=46.94 Aligned_cols=62 Identities=11% Similarity=0.130 Sum_probs=52.6
Q ss_pred CCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEE
Q 002138 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (960)
Q Consensus 207 ~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (960)
++....+.++..+|+.+|++++.+..++|++++||. +. ...|.|. .+|.+.++..|..|.+-
T Consensus 12 ~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~-~~----gk~L~d~-~tL~~~~i~~g~~i~l~ 73 (77)
T 2bwf_A 12 GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLI-YS----GKILKDD-QTVESYHIQDGHSVHLV 73 (77)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE-ET----TEECCTT-SBTGGGTCCTTCEEEEE
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEE-EC----CeEcCCC-CCHHHcCCCCCCEEEEE
Confidence 556778999999999999999999999999999998 32 2456664 89999999999988874
No 33
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=96.01 E-value=0.024 Score=50.41 Aligned_cols=68 Identities=10% Similarity=0.144 Sum_probs=57.2
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEeecC
Q 002138 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQVHG 279 (960)
Q Consensus 206 ~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~~g 279 (960)
.++..+.+.++..+||.+|++++.+.++++.+++||. +. ...|.| +.+|.+.++..|..|.+-++..|
T Consensus 9 ~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~-~~----G~~L~d-~~tL~~~~i~~~~~i~l~~r~~g 76 (96)
T 3k9o_B 9 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FA----GKQLED-GRTLSDYNIQKESTLHLVLRLRG 76 (96)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE-ET----TEECCT-TSBTGGGTCCTTCEEEEEECCCC
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEE-EC----CEECCC-CCcHHHcCCCCCCEEEEEEEcCC
Confidence 3566788999999999999999999999999999998 32 245666 47999999999999999888543
No 34
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=96.00 E-value=0.022 Score=51.16 Aligned_cols=66 Identities=8% Similarity=0.052 Sum_probs=55.5
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEee
Q 002138 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQV 277 (960)
Q Consensus 206 ~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~ 277 (960)
.++..+.+.++..+||.+|++++.+.+++|++++||.. . ...|.| +.+|.+.++..|..|.+-++.
T Consensus 30 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~-~----Gk~L~D-~~tL~~~~i~~g~~i~l~~rl 95 (98)
T 4hcn_B 30 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF-A----GKQLED-GRTLSDYNIQKESTLHLVLRL 95 (98)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE-T----TEECCT-TCBSGGGTCCTTEEEEEECBC
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEE-C----CEECCC-CCcHHHCCCCCCCEEEEEEec
Confidence 45667889999999999999999999999999999983 2 345666 479999999999998886663
No 35
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=95.98 E-value=0.03 Score=50.26 Aligned_cols=65 Identities=9% Similarity=-0.004 Sum_probs=52.4
Q ss_pred CeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCC-ccccccccccccccccccCCCCEEEE
Q 002138 209 NSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQ-TTQFLMNDRVTMSDDFSAKPGEEVFL 273 (960)
Q Consensus 209 ~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~-~~~~lL~d~~~tL~d~~l~~~q~Ill 273 (960)
...++.|...+||.+|++++...+++|++.+||...... .....|.+.+++|.+.+++.|..|.|
T Consensus 27 ~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihl 92 (97)
T 2kj6_A 27 FSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHI 92 (97)
T ss_dssp CCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEE
T ss_pred eEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEE
Confidence 468899999999999999999999999999999854321 11223444468999999999998876
No 36
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.89 E-value=0.042 Score=48.09 Aligned_cols=65 Identities=12% Similarity=0.108 Sum_probs=54.4
Q ss_pred CeEEE-EEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEeecC
Q 002138 209 NSLLV-KISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQVHG 279 (960)
Q Consensus 209 ~~~~~-~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~~g 279 (960)
..+++ .++..+||.+|++++.+..++|++++||.. . ...|.| +.+|.+.++..+..|.|-++..|
T Consensus 19 ~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~-~----gk~L~d-~~tL~~~~i~~g~~i~l~~~~~g 84 (89)
T 1wy8_A 19 KTCTIEDVSRKATIEELRERVWALFDVRPECQRLFY-R----GKQLEN-GYTLFDYDVGLNDIIQLLVRPDS 84 (89)
T ss_dssp CEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEE-T----TEECCS-SSBHHHHTCCTTCEEEEEECCCC
T ss_pred ceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEE-C----CeECCC-CCCHHHCCCCCCCEEEEEEeCCC
Confidence 57888 599999999999999999999999999984 2 245665 48999999999999988777443
No 37
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=95.89 E-value=0.025 Score=52.50 Aligned_cols=71 Identities=8% Similarity=0.107 Sum_probs=58.9
Q ss_pred CCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccC-------CCCEEEEEEeecCc
Q 002138 208 TNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAK-------PGEEVFLQLQVHGF 280 (960)
Q Consensus 208 ~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~-------~~q~IllE~k~~g~ 280 (960)
...+++.+...+||.+|+.++....+||++++||+ +.+ ..|+|. +||.+.++. .+..|-|-++.+|.
T Consensus 11 ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi-~~G----k~LeD~-~TLsdy~I~~~~a~~q~~stL~L~lr~~g~ 84 (118)
T 2fnj_B 11 KTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLY-KDD----QLLDDG-KTLGECGFTSQTARPQAPATVGLAFRADDT 84 (118)
T ss_dssp TEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEE-ETT----EECCTT-SBHHHHTCCTTTSBTTBCEEEEEEEBSSSC
T ss_pred CEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEE-ECC----eECCCC-CCHHHcCcccccccCCCCCEEEEEecCCCc
Confidence 34678899999999999999999999999999999 433 367664 899999999 57788888887777
Q ss_pred ccCc
Q 002138 281 SDSV 284 (960)
Q Consensus 281 w~~~ 284 (960)
|...
T Consensus 85 fe~l 88 (118)
T 2fnj_B 85 FEAL 88 (118)
T ss_dssp BCCC
T ss_pred eeee
Confidence 7643
No 38
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=95.89 E-value=0.028 Score=49.30 Aligned_cols=65 Identities=17% Similarity=0.272 Sum_probs=54.6
Q ss_pred CCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEee
Q 002138 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQV 277 (960)
Q Consensus 207 ~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~ 277 (960)
++..+++.++..+||.+|++++....++|++++||. +. ...|.| +.+|.+.++..|..|.+-++.
T Consensus 13 ~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~----Gk~L~D-~~tL~~~~I~~g~~i~l~~~~ 77 (88)
T 2hj8_A 13 KGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT-FE----GKPLED-QLPLGEYGLKPLSTVFMNLRL 77 (88)
T ss_dssp TSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEE-SS----SSCCCT-TSBHHHHHCSTTCEEEEEEC-
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEE-EC----CEECCC-CCcHHHcCCCCCCEEEEEEEc
Confidence 456778999999999999999999999999999998 32 235665 489999999999999887663
No 39
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=95.84 E-value=0.034 Score=46.76 Aligned_cols=66 Identities=17% Similarity=0.099 Sum_probs=55.1
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEee
Q 002138 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQV 277 (960)
Q Consensus 206 ~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~ 277 (960)
.++....+.++..+|+.+|++++.+..++|++++||.. . ...|.| +.+|.+.++..|..|.+-++.
T Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~-~----g~~L~d-~~tL~~~~i~~g~~i~l~~~~ 73 (76)
T 1ndd_A 8 LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY-S----GKQMND-EKTAADYKILGGSVLHLVLAL 73 (76)
T ss_dssp TTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE-T----TEECCT-TSBGGGGTCCTTCEEEEEECC
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEE-C----CEECCC-CCcHHHcCCCCCCEEEEEEeC
Confidence 34567789999999999999999999999999999983 2 235655 479999999999999887663
No 40
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.84 E-value=0.026 Score=49.22 Aligned_cols=65 Identities=8% Similarity=-0.046 Sum_probs=54.9
Q ss_pred CCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEee
Q 002138 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQV 277 (960)
Q Consensus 207 ~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~ 277 (960)
++..+.+.++..+|+.+|++++.+..++|++++||.. . ...|.| +.+|.+.++..+..|.+-++.
T Consensus 16 ~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~-~----Gk~L~d-~~tL~~~~i~~g~~i~l~~~~ 80 (87)
T 1wh3_A 16 DGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEF-Q----GQVLQD-WLGLGIYGIQDSDTLILSKKK 80 (87)
T ss_dssp TTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEE-T----TEECCS-SSBHHHHTCCTTEEEEEEECS
T ss_pred CCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEE-C----CEEccC-CCCHHHCCCCCCCEEEEEEec
Confidence 4567789999999999999999999999999999983 2 235666 479999999999999887773
No 41
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=95.82 E-value=0.043 Score=48.21 Aligned_cols=64 Identities=9% Similarity=0.075 Sum_probs=53.7
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEe
Q 002138 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (960)
Q Consensus 206 ~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (960)
.++..+++.++..+||.+|++++...++++.+++||.. ....|.| +.+|.+.++ .|..|.|-++
T Consensus 13 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~-----~Gk~L~d-~~tL~~~~i-~g~~i~l~~~ 76 (90)
T 4dwf_A 13 LDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY-----QGRVLQD-DKKLQEYNV-GGKVIHLVER 76 (90)
T ss_dssp TTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE-----TTEECCT-TSBGGGGTC-TTEEEEEEEC
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE-----CCeECCC-CCCHHHcCC-CCcEEEEEec
Confidence 35677889999999999999999999999999999983 2345766 579999999 7888887655
No 42
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=95.79 E-value=0.043 Score=47.95 Aligned_cols=62 Identities=10% Similarity=0.085 Sum_probs=51.9
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEE
Q 002138 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (960)
Q Consensus 206 ~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (960)
.++....+.++..+|+.+|++++...+++|++++||.. ....|.| +.+|.+.++ .|..|.+-
T Consensus 25 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~-----~Gk~L~D-~~tL~~~~i-~g~~i~lv 86 (88)
T 4eew_A 25 LDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY-----QGRVLQD-DKKLQEYNV-GGKVIHLV 86 (88)
T ss_dssp TTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE-----TTEECCT-TSBGGGGTC-TTEEEEEE
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE-----CCEECCC-CCcHHHcCC-CCcEEEEE
Confidence 35677889999999999999999999999999999984 2346777 579999999 78877663
No 43
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.76 E-value=0.029 Score=49.59 Aligned_cols=63 Identities=10% Similarity=-0.004 Sum_probs=52.8
Q ss_pred CCCeEEEEEccC-----CcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEE
Q 002138 207 ETNSLLVKISLE-----DNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (960)
Q Consensus 207 ~~~~~~~~~Sk~-----~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (960)
.+..+.+.+... +||.+|++++.+..++|++++||.. . ...|.|.+.+|.+.++..|..|.|.
T Consensus 15 ~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~-~----Gk~L~D~~~~L~~~~i~~g~~i~l~ 82 (92)
T 1wxv_A 15 SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIF-K----GKSLKEMETPLSALGIQDGCRVMLI 82 (92)
T ss_dssp SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEE-T----TEEECCSSSBHHHHTCCSSEEEEEE
T ss_pred CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEE-C----CeecCCCcccHHHCCCCCCCEEEEE
Confidence 356678899885 9999999999999999999999983 2 3457776678999999999988884
No 44
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=95.73 E-value=0.035 Score=48.48 Aligned_cols=63 Identities=11% Similarity=0.091 Sum_probs=52.5
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEE
Q 002138 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (960)
Q Consensus 206 ~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (960)
..+..+.+.++..+|+.+|++++.+..++|++++||. +. ...|+| +.+|.++++..|..|.+-
T Consensus 19 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~----Gk~L~D-~~tL~~~gi~~g~~l~l~ 81 (85)
T 2kd0_A 19 FGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLI-FK----GKVLVE-TSTLKQSDVGSGAKLMLM 81 (85)
T ss_dssp ETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEE-ET----TEECCT-TCBTTTTTCCTTEEEEEE
T ss_pred ECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEE-EC----CeECCC-cCCHHHCCCCCCCEEEEE
Confidence 3456678899999999999999999999999999997 32 345666 479999999999988773
No 45
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=95.65 E-value=0.055 Score=49.78 Aligned_cols=66 Identities=9% Similarity=0.112 Sum_probs=55.8
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEee
Q 002138 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQV 277 (960)
Q Consensus 206 ~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~ 277 (960)
.++..+.+.++..+||.+|+.++++.+++|++++||. +. ...|.| +.+|.+.++..|..|.+-++.
T Consensus 43 ~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~----Gk~L~D-~~tL~~~gI~~gs~I~l~~rl 108 (111)
T 3vdz_A 43 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FA----GKQLED-GRTLSDYNIQKESTLHLVLRL 108 (111)
T ss_dssp SSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE-ET----TEECCT-TSBTTTTTCCTTCEEEEEECC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEE-EC----CEECCC-CCcHHHCCCCCCCEEEEEEec
Confidence 3567788999999999999999999999999999998 32 245666 479999999999999887663
No 46
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=95.60 E-value=0.039 Score=50.71 Aligned_cols=66 Identities=11% Similarity=0.107 Sum_probs=55.3
Q ss_pred CCCeEEEEEcc-CCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEeec
Q 002138 207 ETNSLLVKISL-EDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQVH 278 (960)
Q Consensus 207 ~~~~~~~~~Sk-~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~~ 278 (960)
.+..+++.++. .+||.+|++++...+++|++++||.. . ..+|+| +.+|.+.++..|..|.|-++..
T Consensus 39 ~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~-~----Gk~L~D-~~tL~~y~I~~g~~l~l~~r~~ 105 (111)
T 1we6_A 39 DGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSG-K----AGFLKD-NMSLAHYNVGAGEILTLSLRER 105 (111)
T ss_dssp SSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEEC-S----SSBCCT-TSBTTTTTCSSSCEEEEECSSC
T ss_pred CCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEE-C----CEECCC-CCcHHHCCCCCCCEEEEEEEcC
Confidence 45567889997 99999999999999999999999983 2 235666 4899999999999999977743
No 47
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=95.45 E-value=0.058 Score=48.24 Aligned_cols=67 Identities=7% Similarity=0.056 Sum_probs=56.3
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEeec
Q 002138 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQVH 278 (960)
Q Consensus 206 ~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~~ 278 (960)
.++....+.++..+||.+|++++.+..+++++++||.. . ...|.| +.+|.+.++..|..|.+.++.-
T Consensus 8 ~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~-~----Gk~L~D-~~tL~~~gi~~g~~i~l~~~~~ 74 (98)
T 1yx5_B 8 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-A----GKQLED-GRTLSDYNIQKESTLHLVLRLR 74 (98)
T ss_dssp TTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEE-T----TEECCT-TSBTGGGTCCTTCEEEEEECCC
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE-C----CEECCC-CCCHHHcCCCCCCEEEEEEeCC
Confidence 34567789999999999999999999999999999983 2 235666 5899999999999999987743
No 48
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.45 E-value=0.055 Score=46.22 Aligned_cols=64 Identities=9% Similarity=0.037 Sum_probs=52.8
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEE
Q 002138 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQL 275 (960)
Q Consensus 206 ~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~ 275 (960)
.++....+.++..+|+.+|++++.+..+++++++||.. . ...|.| +.+|.+.++..|..|.+-+
T Consensus 15 ~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~-~----gk~L~d-~~tL~~~~i~~g~~i~l~~ 78 (81)
T 2dzi_A 15 LQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLF-K----GKALAD-GKRLSDYSIGPNSKLNLVV 78 (81)
T ss_dssp TTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEE-T----TEECCT-TSBGGGGTCCSSBCCEEEC
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE-C----CeECCC-CCcHHHcCCCCCCEEEEEE
Confidence 34567789999999999999999999999999999973 2 235665 4799999999998887743
No 49
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=95.44 E-value=0.044 Score=47.71 Aligned_cols=63 Identities=6% Similarity=0.074 Sum_probs=53.1
Q ss_pred CCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccc-cccccccccccccCCCCEEEEEE
Q 002138 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFL-MNDRVTMSDDFSAKPGEEVFLQL 275 (960)
Q Consensus 207 ~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~l-L~d~~~tL~d~~l~~~q~IllE~ 275 (960)
.+...++.++..+||.+|++++....++|++++||.. . ... |+| +.+|.+.++..|..|.+-+
T Consensus 19 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~-~----Gk~lL~D-~~tL~~y~I~~gs~i~lv~ 82 (84)
T 2kk8_A 19 NGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIV-D----GIVILRE-DLTVEQCQIVPTSDIQLEV 82 (84)
T ss_dssp TSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE-T----TEECCCS-SSBHHHHTCCTTSCEEEEE
T ss_pred CCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEE-C----CEEecCC-cCCHHHcCCCCCCEEEEEE
Confidence 4567889999999999999999999999999999983 2 234 666 4899999999999887754
No 50
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.43 E-value=0.059 Score=49.63 Aligned_cols=77 Identities=10% Similarity=0.113 Sum_probs=65.2
Q ss_pred eeeeEEEEeeecCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEE
Q 002138 195 VFPLQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (960)
Q Consensus 195 vyPl~l~l~~~~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (960)
-..+.+++...+.++.+++.|+...|+.+|++.+-..+++|.+.+||- | .+..|+|. .||.+.+++.|..|=|+
T Consensus 13 ~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLI-y----~GKiLKD~-eTL~~~gIk~g~TIhLv 86 (118)
T 2daf_A 13 DSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIR-Y----SGKILKNN-ETLVQHGVKPQEIVQVE 86 (118)
T ss_dssp SSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEE-E----TTEEECSS-CCHHHHSCCSSCEEEEE
T ss_pred CccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEE-E----CCeEcCCc-chHHHcCCCCCCEEEEE
Confidence 344677776566778899999999999999999999999999999987 3 33467774 79999999999999999
Q ss_pred Eee
Q 002138 275 LQV 277 (960)
Q Consensus 275 ~k~ 277 (960)
++.
T Consensus 87 i~s 89 (118)
T 2daf_A 87 IFS 89 (118)
T ss_dssp EEE
T ss_pred Eec
Confidence 883
No 51
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=95.43 E-value=0.031 Score=49.63 Aligned_cols=63 Identities=5% Similarity=-0.059 Sum_probs=53.7
Q ss_pred CCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEe
Q 002138 208 TNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (960)
Q Consensus 208 ~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (960)
+....+.++..+||.+|++++.+..++|++++||.. . ...|+| +.+|.+.++..|..|.+-++
T Consensus 27 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~-~----Gk~L~D-~~tL~~y~I~~gstI~lv~r 89 (93)
T 2l7r_A 27 QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLL-A----GAPLED-EATLGQCGVEALTTLEVAGR 89 (93)
T ss_dssp SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEE-T----TEECCT-TSBHHHHTCCSSCEEEEECC
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEE-C----CEECCC-CCcHHHCCCCCCCEEEEEEe
Confidence 567789999999999999999999999999999983 2 235665 47999999999999988665
No 52
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=95.42 E-value=0.087 Score=44.74 Aligned_cols=64 Identities=14% Similarity=0.154 Sum_probs=52.4
Q ss_pred CCCe-EEEE-EccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEe
Q 002138 207 ETNS-LLVK-ISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (960)
Q Consensus 207 ~~~~-~~~~-~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (960)
++.. .++. ++..+|+.+|++++....++|++++||.. . ...|.| +.+|.+.++..|..|.+-++
T Consensus 11 ~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~-~----g~~L~d-~~tL~~~~i~~g~~i~l~~r 76 (78)
T 2faz_A 11 DGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFY-R----GKQMED-GHTLFDYEVRLNDTIQLLVR 76 (78)
T ss_dssp TSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE-T----TEECCT-TCBTTTTTCCTTCEEEEEEC
T ss_pred CCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEE-C----CEECCC-CCCHHHcCCCCCCEEEEEEe
Confidence 3445 3788 99999999999999999999999999984 2 235665 47999999999998887544
No 53
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=95.39 E-value=0.072 Score=48.06 Aligned_cols=63 Identities=11% Similarity=0.115 Sum_probs=53.2
Q ss_pred CCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEe
Q 002138 208 TNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (960)
Q Consensus 208 ~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (960)
+..+.+.++..+||.+|++++.+..+++++++||.. . ...|.| +.+|.+.++..|..|.|-.+
T Consensus 34 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~-~----Gk~L~D-~~tL~~~gI~~g~~I~l~~~ 96 (101)
T 2klc_A 34 KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIF-A----GKILKD-QDTLSQHGIHDGLTVHLVIK 96 (101)
T ss_dssp SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEE-T----TEEECT-TCCTGGGTCCTTCEEEEEEC
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEE-C----CEECCC-cCcHHHcCCCCCCEEEEEEc
Confidence 566789999999999999999999999999999973 2 245665 48999999999999888554
No 54
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=95.39 E-value=0.079 Score=45.79 Aligned_cols=65 Identities=6% Similarity=-0.006 Sum_probs=53.6
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHHH---cCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEe
Q 002138 206 QETNSLLVKISLEDNKVDLYKRACNL---FISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (960)
Q Consensus 206 ~~~~~~~~~~Sk~~Ti~eL~~~v~~l---f~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (960)
.++..+.+.++..+||.+|++++.+. .+++.+++||.. . ...|+| +.+|.+.++..|..|.+-.+
T Consensus 13 ~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~-~----Gk~L~D-~~tL~~~~i~~g~~i~l~~~ 80 (85)
T 2wyq_A 13 LQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIY-A----GKILSD-DVPIRDYRIDEKNFVVVMVT 80 (85)
T ss_dssp TTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEE-T----TEECCT-TSBGGGGCCCTTSEEEEEEC
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEE-C----CEECcC-CCCHHHcCCCCCCEEEEEEc
Confidence 34667889999999999999999997 689999999973 2 345666 47999999999999988544
No 55
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=95.39 E-value=0.056 Score=46.12 Aligned_cols=65 Identities=9% Similarity=0.100 Sum_probs=54.5
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEe
Q 002138 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (960)
Q Consensus 206 ~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (960)
.++..+.+.++..+|+.+|++++++..++|++++||.. . ...|.|. .|+.+.++..|..|-+-++
T Consensus 11 ~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~-~----G~~L~d~-~tl~~~~i~~~~~i~l~~~ 75 (79)
T 2uyz_B 11 QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF-E----GQRIADN-HTPKELGMEEEDVIEVYQE 75 (79)
T ss_dssp TTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-T----TEECCTT-CCHHHHTCCTTEEEEEEEC
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEE-C----CEEeCCC-CCHHHcCCCCCCEEEEEEe
Confidence 44667889999999999999999999999999999973 2 3456664 7999999999998887655
No 56
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=95.35 E-value=0.06 Score=49.79 Aligned_cols=70 Identities=10% Similarity=0.065 Sum_probs=58.1
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEeecCcc
Q 002138 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQVHGFS 281 (960)
Q Consensus 206 ~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~~g~w 281 (960)
.++...++.++..+||.+|++++....++|++++||.. . ...|.| +.+|.+.++..|..|.|.++..|.+
T Consensus 17 l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~-~----Gk~L~D-~~tL~~ygI~~gstI~l~~~~~GG~ 86 (114)
T 2kdi_A 17 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIW-A----GKQLED-GRTLSDYNIQRESTLHLVLRLRGGS 86 (114)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE-T----TEECCT-TCBTTTTTCCSSCEEEEEECCCSSC
T ss_pred CCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEE-C----CEECCC-CCcHHHCCCCCCCEEEEEEEcCCCc
Confidence 34577889999999999999999999999999999973 2 235665 4899999999999999988855543
No 57
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.35 E-value=0.064 Score=50.47 Aligned_cols=65 Identities=11% Similarity=0.079 Sum_probs=54.3
Q ss_pred CCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEeec
Q 002138 208 TNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQVH 278 (960)
Q Consensus 208 ~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~~ 278 (960)
+..+++.++..+||.+|++++.+.++++.+++||.. . ...|+| +.+|.+.++..|..|.|-.+..
T Consensus 41 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~-~----Gk~L~D-~~tL~dygI~~gstI~lv~~~~ 105 (125)
T 1j8c_A 41 KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIF-A----GKILKD-QDTLIQHGIHDGLTVHLVIKRD 105 (125)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEE-T----TEEEST-TSCGGGTTCSSSEEEEEEEC--
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEE-C----CEEcCC-CCCHHHcCCCCCCEEEEEeccC
Confidence 567889999999999999999999999999999983 2 235665 4899999999999998877643
No 58
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.33 E-value=0.059 Score=48.05 Aligned_cols=64 Identities=5% Similarity=-0.013 Sum_probs=51.0
Q ss_pred eEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccc-cccccccccccccccCCCCEEEE
Q 002138 210 SLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQ-FLMNDRVTMSDDFSAKPGEEVFL 273 (960)
Q Consensus 210 ~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~-~lL~d~~~tL~d~~l~~~q~Ill 273 (960)
..++.+...+||.+|+.++....++|++++||.......+. ..|.+.+++|.+.++..|..|.|
T Consensus 20 ~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v 84 (95)
T 1v6e_A 20 RSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHV 84 (95)
T ss_dssp CEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEE
T ss_pred eEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEE
Confidence 58899999999999999999999999999999964311111 12333358999999999998777
No 59
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.32 E-value=0.038 Score=49.78 Aligned_cols=60 Identities=8% Similarity=0.057 Sum_probs=52.4
Q ss_pred CCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEE
Q 002138 208 TNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFL 273 (960)
Q Consensus 208 ~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Ill 273 (960)
+..+++.+...+|+.+|++++.+.+++|++.+||- |. ..+|+|. .||.+.++..|..|++
T Consensus 29 ~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI-~~----GKiL~D~-~TL~~y~I~~gsti~v 88 (100)
T 1wju_A 29 DRKNLLETRLHITGRELRSKIAETFGLQENYIKIV-IN----KKQLQLG-KTLEEQGVAHNVKAMV 88 (100)
T ss_dssp SSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEE-ET----TEECCTT-SBHHHHTCCSSEEEEE
T ss_pred CcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEE-eC----CeECCCC-CcHHHcCCCCCCEEEE
Confidence 56789999999999999999999999999999997 43 3467774 8999999999999865
No 60
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.32 E-value=0.064 Score=48.79 Aligned_cols=62 Identities=11% Similarity=0.067 Sum_probs=52.7
Q ss_pred eEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEee
Q 002138 210 SLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQV 277 (960)
Q Consensus 210 ~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~ 277 (960)
.+.+.+...+||.+|++++.+.++++.+++||.. . ...|+| +.+|.+.++..|..|.|.++.
T Consensus 28 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~-~----Gk~L~D-~~tL~~~gi~~g~~i~l~~~~ 89 (106)
T 1wx7_A 28 KEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIF-A----GKILKD-PDSLAQCGVRDGLTVHLVIKR 89 (106)
T ss_dssp EEEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEE-T----TEECCT-TSCHHHHTCCTTEEEEEEECC
T ss_pred cEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE-C----CEECCC-cCcHHHcCCCCCCEEEEEEcC
Confidence 3688999999999999999999999999999973 2 245666 489999999999999887763
No 61
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=95.25 E-value=0.076 Score=47.85 Aligned_cols=61 Identities=11% Similarity=0.079 Sum_probs=52.1
Q ss_pred eEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEe
Q 002138 210 SLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (960)
Q Consensus 210 ~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (960)
...+.++..+||.+|++++.+..++|++++||.. . ...|+| +.+|.+.++..|..|.+-++
T Consensus 33 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~-~----Gk~L~D-~~tL~~ygI~~gstI~l~~r 93 (100)
T 1yqb_A 33 KEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIF-A----GKILKD-PDSLAQCGVRDGLTVHLVIK 93 (100)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE-T----TEECCT-TSBHHHHTCCTTCEEEEEEC
T ss_pred cEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE-C----CEECCC-cCcHHHCCCCCCCEEEEEEc
Confidence 3688999999999999999999999999999973 2 245666 47999999999999988665
No 62
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=95.22 E-value=0.063 Score=49.64 Aligned_cols=64 Identities=11% Similarity=0.106 Sum_probs=54.1
Q ss_pred CeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEeec
Q 002138 209 NSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQVH 278 (960)
Q Consensus 209 ~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~~ 278 (960)
..+++.++..+||.+|++++....+++++++||.. . ...|.| +.+|.+.++..|..|.|-++.-
T Consensus 46 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~-~----Gk~L~D-~~tL~~y~i~~g~~i~lv~rl~ 109 (115)
T 1we7_A 46 QGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQY-E----GIFIKD-SNSLAYYNMASGAVIHLALKER 109 (115)
T ss_dssp EEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEE-T----TEEECT-TSBHHHHTCCSSCEEEEEECCC
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEE-C----CEECCC-CCCHHHCCCCCCCEEEEEEEcC
Confidence 46778999999999999999999999999999984 2 235666 4799999999999999877743
No 63
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=95.22 E-value=0.086 Score=48.40 Aligned_cols=66 Identities=8% Similarity=0.054 Sum_probs=55.6
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEee
Q 002138 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQV 277 (960)
Q Consensus 206 ~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~ 277 (960)
.++..+.+.++..+||.+|++++.+..+++++++||.. . ...|.| +.+|.+.++..|..|.+-++.
T Consensus 43 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~-~----Gk~L~D-~~tL~~~gI~~gs~I~l~~rl 108 (111)
T 2ojr_A 43 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-A----GKQLED-GRTLSDYNIQKESTLHLVLRL 108 (111)
T ss_dssp SSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEE-T----TEECCS-SCBTTTTTCCTTCEEEEEECC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEE-C----CEECCC-CCcHHHcCCCCCCEEEEEEeC
Confidence 34667889999999999999999999999999999973 2 235666 589999999999999987763
No 64
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.15 E-value=0.043 Score=49.13 Aligned_cols=60 Identities=10% Similarity=0.059 Sum_probs=51.3
Q ss_pred CCCeE-EEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEE
Q 002138 207 ETNSL-LVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFL 273 (960)
Q Consensus 207 ~~~~~-~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Ill 273 (960)
.+..+ .+.+...+|+.+|+.++.+..+++++++||. + ....|+|. +|.+.++..|..|+|
T Consensus 15 ~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi-~----~Gk~L~D~--tL~~~~I~~g~~i~l 75 (96)
T 1wgg_A 15 GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVM-V----KGGTLKDD--DWGNIKMKNGMTVLM 75 (96)
T ss_dssp TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCE-E----TTEECCSS--CCCSCCCCSSCEEEC
T ss_pred CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE-E----CCcCCCCC--CHHHCCCCCCCEEEE
Confidence 35667 5899999999999999999999999999998 3 23467764 999999999999988
No 65
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=95.14 E-value=0.018 Score=52.13 Aligned_cols=61 Identities=11% Similarity=0.083 Sum_probs=52.3
Q ss_pred CCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEE
Q 002138 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFL 273 (960)
Q Consensus 207 ~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Ill 273 (960)
.+..+.+.++..+||.+|++++.+..+++++++||.. . ...|.| +.+|.+.++..|..|.|
T Consensus 36 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~-~----Gk~L~D-~~tL~~~gI~~g~tI~l 96 (101)
T 3m63_B 36 GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIY-S----GKILKD-DQTVESYHIQDGHSVHL 96 (101)
T ss_dssp SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEE-T----TEECCT-TSBTTTTTCCTTEEEEE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEE-C----CEECCC-cCcHHHCCCCCCCEEEE
Confidence 5566788999999999999999999999999999984 2 345766 58999999999998887
No 66
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=95.14 E-value=0.035 Score=60.89 Aligned_cols=64 Identities=11% Similarity=0.046 Sum_probs=51.5
Q ss_pred CCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEE
Q 002138 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFL 273 (960)
Q Consensus 207 ~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Ill 273 (960)
.+..+++.+...+|+.+|++++.++.+||++++||... +-++..|.| +.+|.+++++.|..|+|
T Consensus 13 ~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~--k~~Gk~l~D-~~~L~~~~ik~g~~l~L 76 (320)
T 3shq_A 13 SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNL--KYKGKTAAD-NVKISALELKPNFKLMM 76 (320)
T ss_dssp TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTC--BSSSSBCCT-TSBTTSSCCC--CEEEE
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeec--ccCCcccCc-cccHHHcCCCCCCEEEE
Confidence 45678899999999999999999999999999999831 002345766 47899999999999998
No 67
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=95.14 E-value=0.094 Score=49.06 Aligned_cols=65 Identities=15% Similarity=0.118 Sum_probs=52.0
Q ss_pred eEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCcc-ccccccccccccccccCCCCEEEEE
Q 002138 210 SLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTT-QFLMNDRVTMSDDFSAKPGEEVFLQ 274 (960)
Q Consensus 210 ~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~-~~lL~d~~~tL~d~~l~~~q~IllE 274 (960)
..++.+...+||.+|+.++...+++|++++||........ ...|.+.+.+|.+.++..|..|.|-
T Consensus 19 ~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvv 84 (122)
T 1t0y_A 19 PMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAV 84 (122)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEE
T ss_pred cEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEE
Confidence 5789999999999999999999999999999986532111 1134344689999999999988873
No 68
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=95.01 E-value=0.046 Score=49.85 Aligned_cols=64 Identities=6% Similarity=0.155 Sum_probs=55.0
Q ss_pred CCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEe
Q 002138 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (960)
Q Consensus 207 ~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (960)
++..+++.++..+||.+|++++....+++++++||.. ....|.| +.+|.+.++..|..|.|-++
T Consensus 10 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~-----~Gk~L~D-~~tL~~~~i~~g~~i~lv~~ 73 (106)
T 3m62_B 10 KKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIY-----SGKVLQD-SKTVSECGLKDGDQVVFMVS 73 (106)
T ss_dssp TCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEE-----TTEECCT-TSBTTTTTCCTTCEEEEECC
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE-----CCEECCC-cCCHHHcCCCCCCEEEEEEc
Confidence 4667889999999999999999999999999999983 2345777 58999999999999998665
No 69
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=94.76 E-value=0.18 Score=44.84 Aligned_cols=65 Identities=11% Similarity=0.046 Sum_probs=53.9
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHHH---cCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEe
Q 002138 206 QETNSLLVKISLEDNKVDLYKRACNL---FISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (960)
Q Consensus 206 ~~~~~~~~~~Sk~~Ti~eL~~~v~~l---f~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (960)
.++..+++.++..+||.+|++++... .++|++++||.. . ...|+| +.+|.+.++..|..|.+.++
T Consensus 8 ~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~-~----Gk~L~D-~~tL~~ygI~~g~~i~l~~~ 75 (95)
T 1uel_A 8 LQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIY-A----GKILND-DTALKEYKIDEKNFVVVMVT 75 (95)
T ss_dssp TTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEE-T----TEECCT-TSBGGGGTCCSSSEEEEEES
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEE-C----CEECCC-cCcHHHCCCCCCCEEEEEEe
Confidence 34567789999999999999999999 679999999973 2 345766 47999999999999988665
No 70
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=94.75 E-value=0.054 Score=48.24 Aligned_cols=63 Identities=10% Similarity=0.086 Sum_probs=53.3
Q ss_pred CCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEe
Q 002138 208 TNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (960)
Q Consensus 208 ~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (960)
+..+.+.+...+||.+|++++.+..+++.+++||.. . ...|+| +.+|.+.++..|..|.|-++
T Consensus 26 g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~-~----Gk~L~D-~~tL~~~gi~~g~~i~l~~~ 88 (96)
T 1wx8_A 26 QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIF-T----GKILRD-QDILSQRGILDGSTVHVVVR 88 (96)
T ss_dssp SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEE-T----TEECCT-TSCHHHHTCCTTEEEECCBC
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE-C----CEECCC-cCCHHHCCCCCCCEEEEEEe
Confidence 567889999999999999999999999999999973 2 245666 48999999999998887555
No 71
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=94.70 E-value=0.037 Score=49.38 Aligned_cols=60 Identities=12% Similarity=0.231 Sum_probs=50.4
Q ss_pred CCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEE
Q 002138 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFL 273 (960)
Q Consensus 207 ~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Ill 273 (960)
.+..+.+.++..+||.+|++++.+..++|++++||. +. ...|++ .+|.+.++..+..|.|
T Consensus 25 ~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~-~~----Gk~Ldd--~tL~~~~i~~g~~i~l 84 (95)
T 1v86_A 25 NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVM-YK----GLVPED--KTLREIKVTSGAKIMV 84 (95)
T ss_dssp TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCB-SS----SBCCSS--SBHHHHCCCTTEEEEE
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE-EC----CeeCCc--CcHHHCCCCCCCEEEE
Confidence 356778999999999999999999999999999998 32 234533 4999999999998887
No 72
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=94.69 E-value=0.11 Score=46.46 Aligned_cols=65 Identities=9% Similarity=0.100 Sum_probs=54.8
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEe
Q 002138 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (960)
Q Consensus 206 ~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (960)
.++..+++.++..+||.+|+++++...++|++++||.. . ...|.+. .||.++++..|..|-+-++
T Consensus 29 ~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif-~----Gk~L~d~-~tl~dy~i~~g~~I~l~~~ 93 (97)
T 1wyw_B 29 QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF-E----GQRIADN-HTPKELGMEEEDVIEVYQE 93 (97)
T ss_dssp TTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-T----TEECCTT-CCHHHHTCCTTCEEEEEES
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE-C----CeEcCCC-CCHHHCCCCCCCEEEEEEe
Confidence 44677889999999999999999999999999999873 2 3456664 7999999999998887655
No 73
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=94.63 E-value=0.039 Score=48.67 Aligned_cols=63 Identities=14% Similarity=0.118 Sum_probs=51.3
Q ss_pred CCCeEEE-EEccCCcHHHHHHHHHHHcCCCCCceEEEEe-cCCccccccccccccccccccCCCCEEEE
Q 002138 207 ETNSLLV-KISLEDNKVDLYKRACNLFISVSEMLYIWDF-SGQTTQFLMNDRVTMSDDFSAKPGEEVFL 273 (960)
Q Consensus 207 ~~~~~~~-~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~-~~~~~~~lL~d~~~tL~d~~l~~~q~Ill 273 (960)
.+..+++ .+...+|+.+|++++.+..++|++++||... + +...|+| +.+|.++++..|..|+|
T Consensus 15 ~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~---~Gk~L~D-~~~L~~~~i~~g~~l~l 79 (90)
T 1v5t_A 15 GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKV---KGKPAEN-DVKLGALKLKPNTKIMM 79 (90)
T ss_dssp TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEE---TTEECCT-TSBHHHHTCCTTEEEEE
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeecc---CCcCcCC-CCCHHHcCCCCCCEEEE
Confidence 3456678 8899999999999999999999999999831 1 2245666 47899999999998888
No 74
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.41 E-value=0.08 Score=47.74 Aligned_cols=63 Identities=6% Similarity=-0.004 Sum_probs=51.3
Q ss_pred CCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEE
Q 002138 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (960)
Q Consensus 207 ~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (960)
.+..+++.+...+|+.+|+.++.++.+||++++||..+.. ..|+| +.+|.+.+++.|..+.|-
T Consensus 17 ~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~----gkL~D-~~tLs~~~I~~gstL~lv 79 (100)
T 2dzm_A 17 RDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKT----GDVED-STVLKSLHLPKNNSLYVL 79 (100)
T ss_dssp SSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSS----SCCCT-TSBHHHHCCCSEEEEEEC
T ss_pred CCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCC----CCCCC-cCCHHHcCCCCCCEEEEE
Confidence 4567789999999999999999999999999999954322 22555 479999999999888773
No 75
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=94.41 E-value=0.086 Score=47.43 Aligned_cols=63 Identities=16% Similarity=0.075 Sum_probs=53.1
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEE
Q 002138 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (960)
Q Consensus 206 ~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (960)
..+..+++.+...+||.+|++++.+..++|++++||.. . ...|+| +.+|.+.++..+..|-|.
T Consensus 36 l~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~-~----Gk~L~D-~~TL~dygI~~gstlhL~ 98 (100)
T 1uh6_A 36 RLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKK-W----YTIFKD-HVSLGDYEIHDGMNLELY 98 (100)
T ss_dssp SSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEE-T----TEECCS-SCBHHHHTCCTTEEEEEE
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEE-C----CEECCC-CCCHHHcCCCCCCEEEEE
Confidence 34677889999999999999999999999999999983 2 346776 489999999998887664
No 76
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=94.23 E-value=0.093 Score=52.93 Aligned_cols=77 Identities=12% Similarity=0.132 Sum_probs=61.4
Q ss_pred eeeeeEEEEeeecCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEE
Q 002138 194 DVFPLQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFL 273 (960)
Q Consensus 194 EvyPl~l~l~~~~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Ill 273 (960)
+-|-+.|.+- ..++..+++.++..+||.+|++++.+..++|++++||. + ....|.| +.+|.+.++..+..|.|
T Consensus 102 d~~eMqI~VK-tl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi-~----~Gk~L~D-~~tL~dygI~~gstI~L 174 (189)
T 3q3f_A 102 DHYGGQIFVK-TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-F----AGKQLED-GRTLSDYNIQKESTLHL 174 (189)
T ss_dssp CCCCEEEEEE-CTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEE-E----TTEECCT-TCBGGGGTCCTTCEEEE
T ss_pred cccceeeeee-cCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEE-E----CCEECCC-CCCHHHCCCCCCCEEEE
Confidence 4454555542 33567788999999999999999999999999999998 3 2345776 58999999999999998
Q ss_pred EEee
Q 002138 274 QLQV 277 (960)
Q Consensus 274 E~k~ 277 (960)
-++.
T Consensus 175 vlrl 178 (189)
T 3q3f_A 175 VLRL 178 (189)
T ss_dssp CCCC
T ss_pred EEEc
Confidence 6663
No 77
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=94.20 E-value=0.14 Score=45.30 Aligned_cols=62 Identities=13% Similarity=0.014 Sum_probs=50.9
Q ss_pred eEEEEEccCCcHHHHHHHHHHHc--CCCCCceEEEEecCCcccccccccccccccc--ccCCCCEEEEEEee
Q 002138 210 SLLVKISLEDNKVDLYKRACNLF--ISVSEMLYIWDFSGQTTQFLMNDRVTMSDDF--SAKPGEEVFLQLQV 277 (960)
Q Consensus 210 ~~~~~~Sk~~Ti~eL~~~v~~lf--~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~--~l~~~q~IllE~k~ 277 (960)
.+++.+...+||.+|++++...+ +++++++||.. ....|+|. .+|.+. ++..+..|.|-++.
T Consensus 21 ~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~-----~Gk~L~D~-~tL~~~~~~i~~~~~i~lv~~~ 86 (93)
T 1wgd_A 21 DLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIY-----SGKLLLDH-QCLRDLLPKQEKRHVLHLVCNV 86 (93)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEE-----TTEECCSS-SCHHHHSCSSSCSEEEEEECCC
T ss_pred EEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEE-----CCEECcCc-CCHHHHhcCCCCCCEEEEEeCC
Confidence 45666669999999999999999 99999999983 23467664 799999 99999988886653
No 78
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=94.06 E-value=0.13 Score=46.78 Aligned_cols=64 Identities=9% Similarity=-0.036 Sum_probs=54.2
Q ss_pred CCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEe
Q 002138 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (960)
Q Consensus 207 ~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (960)
.+..+.+.++..+||.+|+.++....+++.+++||.. . ...|.| +.+|.+.++..|..|.|-++
T Consensus 32 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~-~----Gk~L~D-~~tL~~ygI~~g~ti~lv~~ 95 (106)
T 1ttn_A 32 TGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFF-S----GRPLTD-KMKFEELKIPKDYVVQVIVS 95 (106)
T ss_dssp TTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEE-T----TEECCT-TSHHHHCCCSSSCEEEEECC
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEE-C----CEECCC-CCcHHHcCCCCCCEEEEEEe
Confidence 4567789999999999999999999999999999984 2 245666 47999999999999988654
No 79
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=94.04 E-value=0.17 Score=50.20 Aligned_cols=67 Identities=7% Similarity=0.056 Sum_probs=56.6
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEeec
Q 002138 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQVH 278 (960)
Q Consensus 206 ~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~~ 278 (960)
.++..+++.++..+||.+|++++....++|++++||.. . ...|+| +.+|.+.++..+..|.+-++..
T Consensus 28 ~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~-~----g~~L~d-~~tL~~~~i~~~~~l~l~~~~~ 94 (172)
T 3u30_A 28 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-A----GKQLED-GRTLSDYNIQKESTLHLVLRLR 94 (172)
T ss_dssp TTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE-T----TEECCT-TCBTGGGTCCTTCEEEEEECCC
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEE-C----Cccccc-cCCHhHcCCcccceeeeeeccc
Confidence 45667889999999999999999999999999999983 2 245666 5799999999999999877743
No 80
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=94.03 E-value=0.18 Score=45.16 Aligned_cols=63 Identities=8% Similarity=0.107 Sum_probs=50.1
Q ss_pred CCCeEEE--EEccCCcHHHHHHHH-HHHcCCCCCceEEEEecCCcccccccccccccccccc-CCCCEEEEEE
Q 002138 207 ETNSLLV--KISLEDNKVDLYKRA-CNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSA-KPGEEVFLQL 275 (960)
Q Consensus 207 ~~~~~~~--~~Sk~~Ti~eL~~~v-~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l-~~~q~IllE~ 275 (960)
.+..+++ .++..+||.+|++++ .+..++|++++||.. .+..|.|. .+|.++++ +.|..|.+=+
T Consensus 28 ~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~-----~Gk~L~D~-~tL~dy~I~~~g~ti~lmv 94 (98)
T 4a20_A 28 QAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLL-----KGKVLHDN-LFLSDLKVTPANSTITVMI 94 (98)
T ss_dssp SSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEE-----TTEEECTT-CBGGGSCCBTTBCEEEEEE
T ss_pred CCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEE-----CCEECcCc-CCHHHcCcCCCCCEEEEEE
Confidence 3444444 667999999999999 778899999999983 33567774 79999999 9999888743
No 81
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=93.98 E-value=0.31 Score=43.32 Aligned_cols=76 Identities=13% Similarity=0.162 Sum_probs=58.5
Q ss_pred eEEEEeeecCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEe-
Q 002138 198 LQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ- 276 (960)
Q Consensus 198 l~l~l~~~~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k- 276 (960)
+.|++. ..++..+.+.+.+.+++..|++..|+..++++..+|++. .+ ..|.+ +.|++++++..|..|=+-++
T Consensus 8 i~ikVk-~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~F-dG----~~l~~-~~Tp~dl~medgD~Idv~~~~ 80 (94)
T 2io1_B 8 INLKVA-GQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF-DG----QPINE-TDTPAQLEMEDEDTIDVFQQQ 80 (94)
T ss_dssp EEEEEE-CTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-TT----EECCT-TCCTTTTTCCTTCEEEEEECC
T ss_pred EEEEEE-CCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEE-CC----EEcCC-CCCHHHcCCCCCCEEEEEEec
Confidence 455542 345677899999999999999999999999999999983 32 34655 47999999999997766444
Q ss_pred ecCc
Q 002138 277 VHGF 280 (960)
Q Consensus 277 ~~g~ 280 (960)
.+|.
T Consensus 81 ~GG~ 84 (94)
T 2io1_B 81 TGGV 84 (94)
T ss_dssp EESC
T ss_pred cCCC
Confidence 3443
No 82
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=93.93 E-value=0.19 Score=49.84 Aligned_cols=68 Identities=9% Similarity=0.086 Sum_probs=57.6
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEeecC
Q 002138 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQVHG 279 (960)
Q Consensus 206 ~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~~g 279 (960)
.++..+++.++..+||.+|++++....++|++++||.. . ...|.| +.+|.+.++..|..|.+-++.-|
T Consensus 8 ~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~-~----Gk~L~D-~~tL~~y~I~~gstI~Lvlrl~G 75 (169)
T 3l0w_B 8 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF-A----GKQLED-GRTLSDYNIQKESTLHLVLRLRG 75 (169)
T ss_dssp TTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEE-T----TEECCT-TSBGGGGTCCTTCEEEEEECCCC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEE-C----CccccC-cCcHHHcCCCCCCEEEEEEEecc
Confidence 45667889999999999999999999999999999983 2 345766 57999999999999999888544
No 83
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=93.93 E-value=0.23 Score=48.39 Aligned_cols=66 Identities=17% Similarity=0.270 Sum_probs=56.5
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEee
Q 002138 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQV 277 (960)
Q Consensus 206 ~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~ 277 (960)
.++...++.++..+||.+|++++....++|++++||. + ....|.| +.+|.+.++..|..|.+-++.
T Consensus 89 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~-~----~G~~L~d-~~tL~~y~i~~g~~l~l~~rl 154 (159)
T 3rt3_B 89 NKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT-F----EGKPLED-QLPLGEYGLKPLSTVFMNLRL 154 (159)
T ss_dssp TTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEE-E----TTEECCT-TSBGGGGTCCTTCEEEEEECC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEE-E----CCeecCC-CCCHHHcCCCCCCEEEEEEec
Confidence 3467788999999999999999999999999999998 3 2355776 479999999999999987773
No 84
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=93.92 E-value=0.33 Score=42.84 Aligned_cols=72 Identities=13% Similarity=0.147 Sum_probs=56.6
Q ss_pred eEEEEeeecCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEe
Q 002138 198 LQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (960)
Q Consensus 198 l~l~l~~~~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (960)
+.|++. ..++..+.+.+.+..++..|++..|+..++++..+|++. .+ ..|.+ +.|+.++++..|..|=+-++
T Consensus 6 i~ikVk-~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~F-dG----~~l~~-~~Tp~dl~medgD~Idv~~~ 77 (91)
T 2io0_B 6 INLKVA-GQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF-DG----QPINE-TDTPAQLEMEDEDTIDVFQQ 77 (91)
T ss_dssp EEEEEE-CTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEE-TT----EECCT-TCCTTTTTCCTTEEEEEEEC
T ss_pred EEEEEE-CCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE-CC----EEcCC-CCCHHHcCCCCCCEEEEEEe
Confidence 455543 345678899999999999999999999999999999994 32 34655 47999999999987665443
No 85
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=93.41 E-value=0.12 Score=45.44 Aligned_cols=63 Identities=8% Similarity=0.143 Sum_probs=50.1
Q ss_pred CCCeEEEE--EccCCcHHHHHHHH-HHHcCCCCCceEEEEecCCcccccccccccccccccc-CCCCEEEEEE
Q 002138 207 ETNSLLVK--ISLEDNKVDLYKRA-CNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSA-KPGEEVFLQL 275 (960)
Q Consensus 207 ~~~~~~~~--~Sk~~Ti~eL~~~v-~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l-~~~q~IllE~ 275 (960)
.+..+++. ++..+||.+|++++ ....++|++++||+ | .+..|.|. .+|.+.++ ..|..|.+-.
T Consensus 10 ~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi-~----~Gk~L~D~-~tL~~y~I~~~~stl~v~~ 76 (87)
T 2lxa_A 10 QAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLL-L----KGKVLHDN-LFLSDLKVTPANSTITVMI 76 (87)
T ss_dssp SSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEE-E----TTEECCTT-CBHHHHCCCGGGCEEEEEE
T ss_pred CCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEE-E----CCEECcCc-CCHHHcCCCCCCCEEEEEc
Confidence 34445555 55999999999999 88899999999999 3 34567774 79999999 6888888743
No 86
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=93.27 E-value=0.45 Score=41.19 Aligned_cols=70 Identities=9% Similarity=-0.047 Sum_probs=54.1
Q ss_pred ecCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEe
Q 002138 205 SQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (960)
Q Consensus 205 ~~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (960)
.+|+..+...|...+|+.+|+..|.. .+.+...++|.--+-..... ..|.++||.|++|..+..++||.+
T Consensus 14 lpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~-~~d~~~TL~e~gL~p~a~L~ve~k 83 (84)
T 3qx1_A 14 TPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVT-QLDPNKSLLEVKLFPQETLFLEAK 83 (84)
T ss_dssp CTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGG-GSCTTSBTTTTTCCSEEEEEEEEC
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCc-CCCCCCCHHHCCCCCCCEEEEEec
Confidence 57888889999999999999999987 45667788887433222111 236678999999999999999865
No 87
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=92.85 E-value=0.36 Score=46.97 Aligned_cols=66 Identities=17% Similarity=0.098 Sum_probs=56.0
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEe-cCCccccccccccccccccccCCCCEEEEEEe
Q 002138 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDF-SGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (960)
Q Consensus 206 ~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~-~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (960)
.++..+++.++..+||.+|++++...+++|++++||..+ .+ ..|+| +.+|.+.++..|..|.+-++
T Consensus 10 ~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g----~~L~d-~~tL~~y~i~~~~~l~l~~~ 76 (159)
T 3rt3_B 10 LAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSG----VALQD-RVPLASQGLGPGSTVLLVVD 76 (159)
T ss_dssp TTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTC----CBCCT-TSCGGGGTCCTTCEEEEEEC
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCC----CCCCC-CCCHHHcCCCCCCEEEEEcc
Confidence 456778899999999999999999999999999999854 33 34655 47999999999999988766
No 88
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=92.62 E-value=0.15 Score=44.41 Aligned_cols=63 Identities=13% Similarity=0.089 Sum_probs=48.7
Q ss_pred EEEE-EccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEE
Q 002138 211 LLVK-ISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (960)
Q Consensus 211 ~~~~-~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (960)
..+. +...+|+.+|+..+.+..+++++.+||..-+ ..+...+.+.+++|.++++..|..|.++
T Consensus 12 ~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~-p~k~l~l~~~~~tL~~~gl~~g~~l~v~ 75 (86)
T 2kzr_A 12 HLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGY-PPECLDLSDRDITLGDLPIQSGDMLIVE 75 (86)
T ss_dssp EEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESS-CCCCCCCCCSSCBTTTSSCCTTCEEECC
T ss_pred EEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCC-CCcccccCCCCCCHHHcCCCCCCEEEEE
Confidence 3466 8899999999999999999999999987422 1121113445689999999999998884
No 89
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=92.54 E-value=0.45 Score=45.60 Aligned_cols=66 Identities=9% Similarity=0.112 Sum_probs=55.4
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEee
Q 002138 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQV 277 (960)
Q Consensus 206 ~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~ 277 (960)
.++....+.++..+|+.+|++++++..++|++++||. +. ...|.| +.+|.+.++..|..|.+-++.
T Consensus 84 ~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~-~~----g~~L~d-~~tL~~~~i~~~~~i~l~~r~ 149 (152)
T 3b08_A 84 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FA----GKQLED-GRTLSDYNIQKESTLHLVLRL 149 (152)
T ss_dssp SSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE-ET----TEECCT-TSBTGGGTCCTTCEEEEEECC
T ss_pred cCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEE-EC----CEECCC-CCCHHHcCCCCCCEEEEEEec
Confidence 3456788999999999999999999999999999998 32 235665 479999999999999887663
No 90
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=92.15 E-value=0.47 Score=45.51 Aligned_cols=66 Identities=8% Similarity=0.054 Sum_probs=55.2
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEee
Q 002138 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQV 277 (960)
Q Consensus 206 ~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~ 277 (960)
.++..+++.++..+|+.+|++++...+++|++++||.. . ...|.| +.+|.+.++..|..|.+..+.
T Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~-~----g~~L~d-~~tL~~~~i~~~~~l~l~~~~ 73 (152)
T 3b08_A 8 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-A----GKQLED-GRTLSDYNIQKESTLHLVLRL 73 (152)
T ss_dssp TTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE-T----TEECCT-TSBTGGGTCCTTCEEEEEECC
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEE-C----CeECcC-cccHHHhccCCCCeeEEEeec
Confidence 34567889999999999999999999999999999984 2 234655 589999999999999887664
No 91
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=91.85 E-value=0.72 Score=38.60 Aligned_cols=69 Identities=12% Similarity=0.160 Sum_probs=54.2
Q ss_pred eEEEEeeecCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEE
Q 002138 198 LQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFL 273 (960)
Q Consensus 198 l~l~l~~~~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Ill 273 (960)
+.|++. ..++..+.+.+.+..++..|++..|+..+++...+|++. .+ ..|.+ +.|++++++..|..|=+
T Consensus 2 i~lkV~-~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~f-dG----~~l~~-~~Tp~~l~medgD~Idv 70 (72)
T 1wm3_A 2 INLKVA-GQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF-DG----QPINE-TDTPAQLEMEDEDTIDV 70 (72)
T ss_dssp EEEEEE-CTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEE-TT----EECCT-TCCTTTTTCCTTEEEEE
T ss_pred EEEEEE-CCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEE-CC----EEcCC-CCCHHHcCCCCCCEEEE
Confidence 344542 345678899999999999999999999999999999994 32 34655 47999999998876643
No 92
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=91.51 E-value=0.26 Score=44.72 Aligned_cols=74 Identities=14% Similarity=0.161 Sum_probs=56.7
Q ss_pred eEEEEeeecCCCeEEEEEccCCcHHHHHHHHHHHcCCCCC---------------ceEEEEecCCccccccccccccccc
Q 002138 198 LQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSE---------------MLYIWDFSGQTTQFLMNDRVTMSDD 262 (960)
Q Consensus 198 l~l~l~~~~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e---------------~~RLW~~~~~~~~~lL~d~~~tL~d 262 (960)
+.|.+. ..++..+++.+...+||.+|++.+.+.++++++ .+||. |.+ ..|.+.++||.+
T Consensus 8 M~I~Vk-~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li-~~G----k~L~dD~~tL~d 81 (105)
T 1v2y_A 8 MTVRVC-KMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLT-SAG----EKLTEDRKKLRD 81 (105)
T ss_dssp EEEEEE-CSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEE-SSS----CEECCSSSBHHH
T ss_pred EEEEEE-ecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEE-eCC----cCccCCcCCHHH
Confidence 344443 245678899999999999999999999998763 46776 432 457665689999
Q ss_pred cccCCCCEEEEEEee
Q 002138 263 FSAKPGEEVFLQLQV 277 (960)
Q Consensus 263 ~~l~~~q~IllE~k~ 277 (960)
.++..|..|.+-.+.
T Consensus 82 ygI~~g~~l~lv~~l 96 (105)
T 1v2y_A 82 YGIRNRDEVSFIKKL 96 (105)
T ss_dssp HTCCSSEEEEEEECS
T ss_pred cCCCCCCEEEEEehh
Confidence 999999998886663
No 93
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=91.31 E-value=0.28 Score=44.64 Aligned_cols=66 Identities=9% Similarity=-0.062 Sum_probs=50.5
Q ss_pred eEEEEEc-cCCcHHHHHHHHHHHcCCCCCceEEEEecCCc-----ccc--cc---ccccccccccccCCCCEEEEEEe
Q 002138 210 SLLVKIS-LEDNKVDLYKRACNLFISVSEMLYIWDFSGQT-----TQF--LM---NDRVTMSDDFSAKPGEEVFLQLQ 276 (960)
Q Consensus 210 ~~~~~~S-k~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~-----~~~--lL---~d~~~tL~d~~l~~~q~IllE~k 276 (960)
...+.+. ..+|+.+|++++...++++++.+||... +.. ... .| .+.+.+|.+.++..|..|.|...
T Consensus 18 ~~~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~-~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G~~L~l~~~ 94 (107)
T 1wf9_A 18 LERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTN-RNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGSMVYLAYE 94 (107)
T ss_dssp EEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSS-GGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTCEEECCCS
T ss_pred CEEEEECCCCCcHHHHHHHHHHHhCcCcccCEEEEC-CccccccCccccccccccCCCCCCHHHCCCCCCCEEEEEeC
Confidence 3478898 9999999999999999999999998733 220 110 22 34468999999999999988543
No 94
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=91.30 E-value=0.51 Score=42.85 Aligned_cols=62 Identities=10% Similarity=0.077 Sum_probs=49.9
Q ss_pred CeEEEEEcc---------CCcHHHHHHHHHHHc--CCCCCc-eEEEEecCCccccccccccccccccccCCCCEEEEEEe
Q 002138 209 NSLLVKISL---------EDNKVDLYKRACNLF--ISVSEM-LYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (960)
Q Consensus 209 ~~~~~~~Sk---------~~Ti~eL~~~v~~lf--~i~~e~-~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (960)
..+++.|.. .+||.+|++++.... ++++++ +||. |. ...|+| +.+|.+.++..|..|.|-.+
T Consensus 26 ~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi-~~----Gk~L~D-~~tL~~y~i~~g~~i~lv~~ 99 (107)
T 1x1m_A 26 PKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLI-YC----GRKLKD-DQTLDFYGIQPGSTVHVLRK 99 (107)
T ss_dssp CCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEE-ET----TEECCT-TCBHHHHTCCTTCEEEEEES
T ss_pred cEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEE-EC----CeECCC-CCcHHHcCCCCCCEEEEEeC
Confidence 567777554 499999999999999 999999 9997 32 345666 48999999999999888544
No 95
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=90.99 E-value=0.63 Score=41.09 Aligned_cols=63 Identities=10% Similarity=0.019 Sum_probs=50.3
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEe
Q 002138 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (960)
Q Consensus 206 ~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (960)
.++..+.+.++..+||.+|++++.... .+++||. |. ...|.|.+.+|.+.++..|..|.|-++
T Consensus 15 ~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi-~~----Gk~L~D~~~tL~~y~i~~g~~i~l~~~ 77 (95)
T 1wia_A 15 LNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLI-YQ----GRLLQDPARTLSSLNITNNCVIHCHRS 77 (95)
T ss_dssp TTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEE-ET----TEECCCSSCBTTTTTCCTTEEEEEECC
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEE-EC----CEEccCCcCCHHHcCCCCCCEEEEEEC
Confidence 345567899999999999999998887 7788887 32 346777558999999999998888544
No 96
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=90.88 E-value=0.45 Score=47.02 Aligned_cols=65 Identities=8% Similarity=0.045 Sum_probs=54.2
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEe
Q 002138 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (960)
Q Consensus 206 ~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (960)
.++..+++.++..+||.+|++++....++|++++||.. . ...|.| +.+|.+.+++.|..|.|-++
T Consensus 104 ~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~-~----g~~L~D-~~tL~~y~i~~g~tl~l~~r 168 (172)
T 3u30_A 104 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-A----GKQLED-GRTLSDYNIQKESTLHLVLR 168 (172)
T ss_dssp SSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE-T----TEECCT-TSBSGGGTCCTTCEEEECC-
T ss_pred ccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEE-C----CccCCC-CCcHHHhCCCCCCEEEEEEe
Confidence 44667889999999999999999999999999999873 2 345666 57999999999999988555
No 97
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=90.66 E-value=0.2 Score=43.17 Aligned_cols=65 Identities=11% Similarity=0.090 Sum_probs=48.3
Q ss_pred CeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEE
Q 002138 209 NSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (960)
Q Consensus 209 ~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (960)
-...+.++..+|+.+|++++.+.++++.+...|..-+.. +..+..+.+.++.++||..|+.|.++
T Consensus 14 G~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p-~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 14 GVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNK-TGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp EEEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCG-GGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred CCEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCC-CCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 355677899999999999999999999777666532222 12332336789999999999999885
No 98
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=90.06 E-value=0.047 Score=46.12 Aligned_cols=64 Identities=6% Similarity=0.004 Sum_probs=51.8
Q ss_pred CCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEe
Q 002138 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (960)
Q Consensus 207 ~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (960)
++..+.+.++..+|+.+|++++.+..++|++++||.. . ...|.| +.+|.+.++..|..|.+-++
T Consensus 9 ~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~-~----gk~L~d-~~tL~~~~i~~g~~i~l~~r 72 (76)
T 3b1l_X 9 SSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIF-A----GKELPN-HLTVQNCDLEQQSIVHIVQR 72 (76)
Confidence 3455678899999999999999999999999999873 2 235665 47999999999988877554
No 99
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=90.51 E-value=0.049 Score=51.44 Aligned_cols=65 Identities=9% Similarity=0.120 Sum_probs=0.0
Q ss_pred CCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEee
Q 002138 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQV 277 (960)
Q Consensus 207 ~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~ 277 (960)
++..+++.++..+||.+|+.++.+.+++|++++||. +. ...|+| +.+|.+.++..|..|.|-++.
T Consensus 9 ~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~----Gk~L~D-~~tL~~~~I~~gsti~l~~rl 73 (128)
T 3u5e_m 9 TGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI-FA----GKQLED-GRTLSDYNIQKESTLHLVLRL 73 (128)
T ss_dssp -----------------------------------------------------------------------
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEE-EC----CEECCC-CCchhhhccCCCCEEEEEEEc
Confidence 355678899999999999999999999999999998 32 245666 589999999999999887774
No 100
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=90.14 E-value=1.1 Score=38.15 Aligned_cols=69 Identities=14% Similarity=0.197 Sum_probs=53.9
Q ss_pred eEEEEeeecCCC-eEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEE
Q 002138 198 LQIRLSVSQETN-SLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFL 273 (960)
Q Consensus 198 l~l~l~~~~~~~-~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Ill 273 (960)
+.|++. ..++. .+.+.+.+..++..|++..|+..+++.+.+|++. .+ ..|.+ +.|+.++++..|..|=+
T Consensus 8 i~ikV~-~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~f-dG----~~l~~-~~Tp~~l~medgD~Idv 77 (79)
T 3a4r_A 8 LRLRVQ-GKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFF-DG----TKLSG-KELPADLGLESGDLIEV 77 (79)
T ss_dssp EEEEEE-CSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEE-TT----EECCS-CCCHHHHTCCTTCEEEE
T ss_pred EEEEEE-eCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE-CC----EEcCC-CCCHHHcCCCCCCEEEE
Confidence 455542 34454 7899999999999999999999999999999994 32 34655 47999999998887643
No 101
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=89.98 E-value=1.9 Score=39.12 Aligned_cols=69 Identities=10% Similarity=0.116 Sum_probs=56.1
Q ss_pred eEEEEeeecCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEE
Q 002138 198 LQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (960)
Q Consensus 198 l~l~l~~~~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (960)
+.|++.. ++..+.+.+.+..++..|++..|+..+++...+|++. .+ ..|.+ +.|+.++++..|..|-+-
T Consensus 32 I~IkV~~--~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~F-dG----~rl~~-~~Tp~dl~medgD~Idv~ 100 (106)
T 2eke_C 32 INLKVSD--GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY-DG----IRIQA-DQTPEDLDMEDNDIIEAH 100 (106)
T ss_dssp EEEEEEC--SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-TT----EECCT-TCCTTTTTCCTTEEEEEE
T ss_pred EEEEEec--CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEE-CC----eEcCC-CCCHHHcCCCCCCEEEEE
Confidence 5666643 6778899999999999999999999999999999994 32 34555 479999999988876653
No 102
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=89.95 E-value=1.6 Score=38.61 Aligned_cols=71 Identities=11% Similarity=0.136 Sum_probs=55.4
Q ss_pred eEEEEeeecCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEE
Q 002138 198 LQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQL 275 (960)
Q Consensus 198 l~l~l~~~~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~ 275 (960)
+.|++. ..++..+.+.+.+..++..|++..|+..+++.+.+|++. .+ ..|.+ +.|+.++++..|..|=+-+
T Consensus 18 i~ikV~-~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~f-dG----~~l~~-~~Tp~dl~medgD~Idv~~ 88 (93)
T 2d07_B 18 INLKVA-GQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF-DG----QPINE-TDTPAQLEMEDEDTIDVFQ 88 (93)
T ss_dssp EEEEEE-CTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEE-TT----EECCT-TCCTTTTTCCTTEEEEEEE
T ss_pred EEEEEE-CCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEE-CC----EEcCC-CCCHHHcCCCCCCEEEEEe
Confidence 455543 345667899999999999999999999999999999983 32 34555 4799999999888775533
No 103
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=89.86 E-value=0.71 Score=41.39 Aligned_cols=58 Identities=14% Similarity=0.087 Sum_probs=45.3
Q ss_pred eEEEEEccCCcHHHHHHHHHHHc-CCC-CCceEEEEecCCcccccccccccccccc--ccCCCCEEEE
Q 002138 210 SLLVKISLEDNKVDLYKRACNLF-ISV-SEMLYIWDFSGQTTQFLMNDRVTMSDDF--SAKPGEEVFL 273 (960)
Q Consensus 210 ~~~~~~Sk~~Ti~eL~~~v~~lf-~i~-~e~~RLW~~~~~~~~~lL~d~~~tL~d~--~l~~~q~Ill 273 (960)
.+++.+...+||.+|++++...+ +++ ++++||. | ....|+|. .+|.+. ++..+..|-|
T Consensus 37 ~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLI-y----~Gk~L~D~-~tL~~y~~~I~~~~tihL 98 (99)
T 2kdb_A 37 DQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLV-Y----SGRLLPDH-LQLKDILRKQDEYHMVHL 98 (99)
T ss_dssp CEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEE-E----TTEEECTT-SBTHHHHTTTCSEEEEEE
T ss_pred EEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEE-E----CCEECCCC-CCHHHHhcCCCCCCEEEe
Confidence 56888899999999999999865 555 5899998 3 33467764 799999 8887776644
No 104
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=89.10 E-value=1.1 Score=48.58 Aligned_cols=64 Identities=8% Similarity=0.054 Sum_probs=53.2
Q ss_pred CCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEe
Q 002138 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (960)
Q Consensus 207 ~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (960)
++....+.++..+||.+|++++.+..+++++++||.. . ...|.| +.+|.+.++..+..|.|-++
T Consensus 242 ~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~-~----Gk~L~D-~~TLsdygI~~gstL~LvlR 305 (307)
T 3ai5_A 242 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-A----GKQLED-GRTLSDYNIQKESTLHLVLR 305 (307)
T ss_dssp TSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE-T----TEECCT-TSBTGGGTCCTTCEEEEEC-
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEe-C----CeecCC-CCCHHHcCCCCCCEEEEEEe
Confidence 4567789999999999999999999999999999984 2 235666 58999999999998887543
No 105
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=88.74 E-value=0.081 Score=51.50 Aligned_cols=64 Identities=9% Similarity=0.113 Sum_probs=0.0
Q ss_pred CCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEe
Q 002138 207 ETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (960)
Q Consensus 207 ~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (960)
++..+++.++..+||.+|+.++...+++|++++||. +. ...|.| +.+|.+.++..|..|.|-++
T Consensus 9 ~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi-~~----Gk~L~D-~~tL~dygI~~gstL~Lvlr 72 (152)
T 3u5c_f 9 TGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI-FA----GKQLED-GRTLSDYNIQKESTLHLVLR 72 (152)
T ss_dssp ----------------------------------------------------------------------
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEE-EC----CEEccc-cCcHHHcCCCCCCEEEEEee
Confidence 345678889999999999999999999999999998 32 245666 47999999999999888777
No 106
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=88.71 E-value=2.3 Score=39.10 Aligned_cols=70 Identities=10% Similarity=0.158 Sum_probs=55.8
Q ss_pred eeEEEEeeecCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEE
Q 002138 197 PLQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFL 273 (960)
Q Consensus 197 Pl~l~l~~~~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Ill 273 (960)
.+.|+|. ..++..+.+.|.+..++..|++..|+..+++...+|+|. .+ ..|++ +.|+.++++..|..|=+
T Consensus 40 ~I~LKV~-~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlF-DG----~rI~~-~~TP~dL~MEDgD~IdV 109 (115)
T 3kyd_D 40 YIKLKVI-GQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF-EG----QRIAD-NHTPKELGMEEEDVIEV 109 (115)
T ss_dssp EEEEEEE-CTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEE-TT----EECCT-TCCTTTTTCCTTCEEEE
T ss_pred eEEEEEE-cCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEE-CC----eECCC-CCCHHHcCCCCCCEEEE
Confidence 3555552 345677899999999999999999999999999999994 32 34555 57999999999987755
No 107
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=88.71 E-value=2.1 Score=38.92 Aligned_cols=72 Identities=13% Similarity=0.033 Sum_probs=55.8
Q ss_pred eEEEEeeecCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccc--cccccccccccCCCCEEEEEE
Q 002138 198 LQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMN--DRVTMSDDFSAKPGEEVFLQL 275 (960)
Q Consensus 198 l~l~l~~~~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~--d~~~tL~d~~l~~~q~IllE~ 275 (960)
+.|| .+|+..+..+|...+|+.+|+..|....+.+...+.|.--+-+ ..+. |.++||+|++|.....++++.
T Consensus 16 IqIR---lpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPr---k~l~~~d~~~TL~elgL~psa~L~v~~ 89 (109)
T 2dzk_A 16 IQFR---LPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPR---REFTREDYKRRLLDLELAPSASVVLLP 89 (109)
T ss_dssp EEEE---CSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSC---CBCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred EEEE---CCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCC---cCCcccccCCCHHHCCCCCceEEEEEE
Confidence 4555 4788889999999999999999998887777677777753322 2333 567999999999888888853
No 108
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=88.45 E-value=1.3 Score=39.96 Aligned_cols=69 Identities=13% Similarity=0.215 Sum_probs=55.3
Q ss_pred eEEEEeeecCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEE
Q 002138 198 LQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFL 273 (960)
Q Consensus 198 l~l~l~~~~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Ill 273 (960)
+.|++. ..++..+.+.+.+..++..|++..|+..+++...+|++ |.+ ..|.+ +.|+.++++..|..|-+
T Consensus 25 I~IkVk-~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~-FdG----~~l~~-~~Tp~dl~medgD~Idv 93 (104)
T 1wz0_A 25 INLKVA-GQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR-FDG----QPINE-TDTPAQLEMEDEDTIDV 93 (104)
T ss_dssp EEEEEE-CSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEE-SSS----SBCCT-TSCTTTTTCCTTEEEEE
T ss_pred EEEEEE-CCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEE-ECC----EEcCC-CCCHHHcCCCCCCEEEE
Confidence 555553 34567789999999999999999999999999999998 333 34554 47999999998887766
No 109
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=87.99 E-value=1.1 Score=41.84 Aligned_cols=68 Identities=13% Similarity=0.029 Sum_probs=53.6
Q ss_pred ecCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCcccccc--ccccccccccccCCCCEEEEEEe
Q 002138 205 SQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLM--NDRVTMSDDFSAKPGEEVFLQLQ 276 (960)
Q Consensus 205 ~~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL--~d~~~tL~d~~l~~~q~IllE~k 276 (960)
.+|+..+..+|...+|+.+|+..|... +.+...+.|.--+-+ ..+ .+.++||.+++|.....++||-.
T Consensus 50 lPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPr---k~l~~~d~~~TL~e~gL~psa~Liv~~~ 119 (124)
T 1wj4_A 50 YPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPR---RKLSHLDYDITLQEAGLCPQETVFVQES 119 (124)
T ss_dssp CTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSC---CEETSSCSSSCTTTTTCCSSBCCEEEEC
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCC---cCCccCCCCCCHHHCCCCCceEEEEEEc
Confidence 578888999999999999999999776 666677888743322 223 46679999999999888888754
No 110
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=87.78 E-value=3.6 Score=37.91 Aligned_cols=69 Identities=12% Similarity=0.164 Sum_probs=50.4
Q ss_pred eEEEEeeecCCCeEEEEEccCCcHHHHHHHHHHH------cCC--CCCceEEEEecCCccccccccccccccccccCCCC
Q 002138 198 LQIRLSVSQETNSLLVKISLEDNKVDLYKRACNL------FIS--VSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGE 269 (960)
Q Consensus 198 l~l~l~~~~~~~~~~~~~Sk~~Ti~eL~~~v~~l------f~i--~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q 269 (960)
+.|++-.. .+...++.+...+||.+|++++... -++ +++++||- | ....|+|. .||.+.++..+.
T Consensus 17 m~I~vKtl-~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLI-y----~GK~LeD~-~TL~~y~I~~~~ 89 (116)
T 1wgh_A 17 INLRLILV-SGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLI-Y----QGRFLHGN-VTLGALKLPFGK 89 (116)
T ss_dssp EEEEEECS-SSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEE-E----TTEEECSS-CBTTTTTCCSSC
T ss_pred EEEEEEeC-CCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEE-E----CCcCCCCC-CcHHHcCCCCCC
Confidence 34444222 3478899999999999999999984 354 58899997 3 33467774 799999998776
Q ss_pred EEEE
Q 002138 270 EVFL 273 (960)
Q Consensus 270 ~Ill 273 (960)
.+.|
T Consensus 90 ~~tl 93 (116)
T 1wgh_A 90 TTVM 93 (116)
T ss_dssp EEEE
T ss_pred ceEE
Confidence 5444
No 111
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.85 E-value=1.6 Score=38.04 Aligned_cols=59 Identities=3% Similarity=-0.041 Sum_probs=47.1
Q ss_pred EEE-EEccCCcHHHHHHHHHHH-cCCCCCceEEEEecCCccccccccccccccccccCCCCEEEE
Q 002138 211 LLV-KISLEDNKVDLYKRACNL-FISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFL 273 (960)
Q Consensus 211 ~~~-~~Sk~~Ti~eL~~~v~~l-f~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Ill 273 (960)
.++ .+...+||.+|++.+.+. .+++++++||-..+ ....|+| +.+|.+.++..+..|.+
T Consensus 25 ~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~---~Gk~L~D-~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 25 CFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDP---KGKSLKD-EDVLQKLPVGTTATLYF 85 (88)
T ss_dssp EEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESST---TSCCCCT-TCBTTTSSCCSEEEEEE
T ss_pred eEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecC---CCcCcCC-CCCHHHcCCCCCCEEEE
Confidence 357 899999999999999995 68999999986322 2346766 47999999998887765
No 112
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=86.73 E-value=1.9 Score=40.38 Aligned_cols=61 Identities=11% Similarity=0.135 Sum_probs=47.7
Q ss_pred CCCeEEEEEccCCcHHHHHHHHHH------HcCCC--CCceEEEEecCCccccccccccccccccccCCCCEEEE
Q 002138 207 ETNSLLVKISLEDNKVDLYKRACN------LFISV--SEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFL 273 (960)
Q Consensus 207 ~~~~~~~~~Sk~~Ti~eL~~~v~~------lf~i~--~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Ill 273 (960)
.+...++.++..+||.+|++++.. .-++| ++++||. |. ...|+|. .||.+.++..+..+.|
T Consensus 26 ~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLI-y~----GK~LeD~-~TL~~y~I~~~~~~tl 94 (125)
T 2gow_A 26 SGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLI-YQ----GRFLHGN-VTLGALKLPFGKTTVM 94 (125)
T ss_dssp TSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEE-SS----SSEEESS-CBTGGGCCCTTSEEEE
T ss_pred CCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEE-EC----CcCCCCC-CcHHHcCCCCCCceEE
Confidence 357889999999999999999998 44664 7889997 43 3467764 7999999988775443
No 113
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=86.01 E-value=3.8 Score=37.20 Aligned_cols=71 Identities=7% Similarity=-0.073 Sum_probs=53.7
Q ss_pred ecCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEeec
Q 002138 205 SQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQVH 278 (960)
Q Consensus 205 ~~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~~ 278 (960)
.+++..+..+|...+|+.+|+..|... +.....++|.--+-+.. +-.+.++||++++|.....++||...+
T Consensus 30 lpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~--l~~d~~~TL~e~gL~p~a~L~Ve~~~~ 100 (109)
T 2cr5_A 30 CPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRA--LEVEGGSSLEDIGITVDTVLNVEEKEQ 100 (109)
T ss_dssp CTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCB--CCCCSSCBHHHHTCSSCEEEEEEECCC
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcC--CCCCCCCCHHHcCCCCCeEEEEEeCCC
Confidence 578888999999999999999998754 44556788775332222 222677999999999999999987644
No 114
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=85.24 E-value=1.8 Score=39.53 Aligned_cols=70 Identities=7% Similarity=0.192 Sum_probs=55.7
Q ss_pred eEEEEeeecCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEE
Q 002138 198 LQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (960)
Q Consensus 198 l~l~l~~~~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (960)
+.|++. ..++..+.+.+.+..++..|++..|+..+++...+|++ |.+ ..|.+ ++|+.++++..|..|=+-
T Consensus 27 I~IkVk-~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfi-FdG----~~L~~-~~Tp~dl~mEDgD~Idv~ 96 (110)
T 2k8h_A 27 VAVKVV-NADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFL-FDG----TPIDE-TKTPEELGMEDDDVIDAM 96 (110)
T ss_dssp EEEEEE-ETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEE-SSS----CBCCS-SSHHHHHHCSSEEEEEEE
T ss_pred EEEEEE-CCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEE-ECC----EEcCC-CCCHHHcCCCCCCEEEEE
Confidence 566653 34567789999999999999999999999999999998 333 34555 479999999988876653
No 115
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=82.85 E-value=1.7 Score=48.35 Aligned_cols=67 Identities=6% Similarity=0.042 Sum_probs=53.0
Q ss_pred CCCeEEEEEccCCcHHHHHHHHHHH---cCCCCCceEEEEecCCccccccccccccccccccCCCCEE-EEEEeecC
Q 002138 207 ETNSLLVKISLEDNKVDLYKRACNL---FISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEV-FLQLQVHG 279 (960)
Q Consensus 207 ~~~~~~~~~Sk~~Ti~eL~~~v~~l---f~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~I-llE~k~~g 279 (960)
.+..+++.++..+||.+||+++... .+++.+++||. |. ...|+| +++|.+.++..|..| ++-.+..+
T Consensus 16 ~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLi-y~----GK~L~D-~~tL~dygI~~gstIv~lv~k~~~ 86 (368)
T 1oqy_A 16 QQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLI-YA----GKILSD-DVPIRDYRIDEKNFVVVMVTKTKA 86 (368)
T ss_dssp TTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEE-SS----SSEECS-SSBTTTTCCCTTSCEEEEEECCCS
T ss_pred CCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEE-EC----CeecCC-cCCHHHcCCCCCCEEEEEEecCCC
Confidence 4566788999999999999999995 56999999997 32 346766 479999999999887 56555443
No 116
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=79.60 E-value=5.8 Score=40.08 Aligned_cols=71 Identities=8% Similarity=0.092 Sum_probs=58.0
Q ss_pred eEEEEeeecCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEe
Q 002138 198 LQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (960)
Q Consensus 198 l~l~l~~~~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (960)
+.|++. .++..+.+.|.+..++..|++..|+..+++...+|++. . ...+.+ ++|+.++++..|..|-+=.+
T Consensus 30 I~LkV~--~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~F-d----G~rI~~-~~TP~dL~MEdgD~Idv~~~ 100 (200)
T 3pge_A 30 INLKVS--DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY-D----GIRIQA-DQTPEDLDMEDNDIIEAHRE 100 (200)
T ss_dssp EEEEEE--CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEE-T----TEECCT-TCCTTTTTCCTTEEEEEEEC
T ss_pred EEEEEe--cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEE-C----CEEcCC-CCCHHHcCCCCCCEEEEEec
Confidence 567763 46778999999999999999999999999999999994 3 234555 47999999999988766444
No 117
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=79.57 E-value=6.6 Score=36.66 Aligned_cols=57 Identities=4% Similarity=-0.003 Sum_probs=43.1
Q ss_pred CCCeE-EEEEccCCcHHHHHHHHHH-----HcCCCC--CceEEEEecCCccccccccccccccccccCCCC
Q 002138 207 ETNSL-LVKISLEDNKVDLYKRACN-----LFISVS--EMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGE 269 (960)
Q Consensus 207 ~~~~~-~~~~Sk~~Ti~eL~~~v~~-----lf~i~~--e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q 269 (960)
++..+ .+.+...+||.+|++++.. .-++|+ +++||- |. ..+|+|. .||.+.++..|.
T Consensus 25 ~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLI-y~----GK~LeD~-~TLsdy~I~~~~ 89 (126)
T 1se9_A 25 DGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLI-SA----GKVLENS-KTVKDYRSPVSN 89 (126)
T ss_dssp TSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEE-ET----TEECCTT-SBGGGGSCCTTS
T ss_pred CCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEE-EC----CeECcCC-CcHHHcCCCcCC
Confidence 34344 6899999999999999954 346775 788986 43 3467774 799999999873
No 118
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=78.07 E-value=5.8 Score=39.63 Aligned_cols=68 Identities=10% Similarity=0.127 Sum_probs=56.3
Q ss_pred eEEEEeeecCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEE
Q 002138 198 LQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFL 273 (960)
Q Consensus 198 l~l~l~~~~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Ill 273 (960)
|.|++ ..++..+.+.|.+..++..|++..|+..+++...+|++. .+ ..|++ ++|+.++++..|..|=+
T Consensus 58 InLKV--k~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLF-DG----qRI~~-ddTPeDLdMEDGDtIDV 125 (207)
T 3tix_A 58 INLKV--SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLY-DG----IEIQA-DQTPEDLDMEDNDIIEA 125 (207)
T ss_dssp EEEEE--ECSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEE-TT----EECCS-SCCTTTTTCCTTEEEEE
T ss_pred EEEEE--ecCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEE-CC----eecCC-CCCHHHcCCCCCCEEEE
Confidence 56666 347788999999999999999999999999999999994 32 34555 57999999998888766
No 119
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=77.38 E-value=10 Score=33.72 Aligned_cols=68 Identities=18% Similarity=0.228 Sum_probs=52.7
Q ss_pred eEEEEeeecCCC-eEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEE
Q 002138 198 LQIRLSVSQETN-SLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVF 272 (960)
Q Consensus 198 l~l~l~~~~~~~-~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Il 272 (960)
+.|++. ..+++ .+.+.+.+..++.-|.+.-|+..+++...+|++. .+ ..+.. +.|.+++++..|..|=
T Consensus 26 I~LkV~-~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~F-DG----~rI~~-~~TP~dLdMEDgD~ID 94 (97)
T 2jxx_A 26 LQLRVQ-GKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFF-DG----TKLSG-RELPADLGMESGDLIE 94 (97)
T ss_dssp EEEEEE-ESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEE-TT----EECCS-CSCHHHHTCCTTEEEE
T ss_pred EEEEEE-cCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEE-CC----EEcCC-CCCHHHcCCCCCCEEE
Confidence 555653 34453 6899999999999999999999999999999984 32 33444 5799999998887764
No 120
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=75.64 E-value=6 Score=36.96 Aligned_cols=69 Identities=12% Similarity=0.054 Sum_probs=50.9
Q ss_pred eEEEEeeecCCCeEEEEEccCCcHHHHHHHHHHHc-CCCCCceEEEEecCCccccccccccccccccccCCCCEEEE
Q 002138 198 LQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLF-ISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFL 273 (960)
Q Consensus 198 l~l~l~~~~~~~~~~~~~Sk~~Ti~eL~~~v~~lf-~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Ill 273 (960)
+.||+ .|+..+..+|...+|+.+|+..|.... +.....+.|.--+- ...+.+.++||.|++|.. ..|++
T Consensus 55 IqIRl---pdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fP---rk~l~d~~~TL~eagL~p-savl~ 124 (127)
T 1s3s_G 55 IQIRL---ADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFP---NKELADENQTLKEANLLN-AVIVQ 124 (127)
T ss_dssp EEEEE---TTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTT---TEECCSTTCBHHHHTCSS-CEEEE
T ss_pred EEEEC---CCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCC---CCCCCCCCCcHHHCCCcC-ceEEE
Confidence 56664 788889999999999999999998864 34456778775332 234556689999999986 44444
No 121
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=64.04 E-value=16 Score=32.62 Aligned_cols=67 Identities=19% Similarity=0.226 Sum_probs=55.8
Q ss_pred cceEEEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhcccCCccceeeeeeecc-ceeeecCCCcccccc
Q 002138 524 RTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYRS-KIFRVLDEPSDLLGL 594 (960)
Q Consensus 524 ~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~e~~~~-~~~~~~~~~~~~~~~ 594 (960)
....|.|+..||+. ..|.|.+..+.+|+++.|.....+..+....++|..-+ .+-++|+|.+..+..
T Consensus 8 ~k~vvkvf~~Dgss----ksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvev 75 (100)
T 1wgr_A 8 RPHVVKVYSEDGAC----RSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEV 75 (100)
T ss_dssp SCEEEEEEETTSCE----EEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHH
T ss_pred CCEEEEEEecCCCE----EEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHH
Confidence 45678889999975 58899999999999999999999998999999998876 677888876555443
No 122
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=63.08 E-value=7.6 Score=36.45 Aligned_cols=37 Identities=5% Similarity=0.167 Sum_probs=33.1
Q ss_pred eEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecC
Q 002138 210 SLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSG 246 (960)
Q Consensus 210 ~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~ 246 (960)
..++.+-+..++.+|++.+-+.||+|.+.+|||....
T Consensus 57 ~~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~~~ 93 (130)
T 2kvr_A 57 YTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQA 93 (130)
T ss_dssp CEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEECCC
T ss_pred cceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEeec
Confidence 4578888999999999999999999999999997644
No 123
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=59.70 E-value=63 Score=27.37 Aligned_cols=62 Identities=16% Similarity=0.161 Sum_probs=48.9
Q ss_pred ecCCCeEEEEEccCCcHHHHHHHHHHHcCCCCC-ceEEEEecCCccccccccccccccccccCCCCEEE
Q 002138 205 SQETNSLLVKISLEDNKVDLYKRACNLFISVSE-MLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVF 272 (960)
Q Consensus 205 ~~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e-~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Il 272 (960)
++...-+.+.+....++..|.+.-|+..+|+.+ .+|+- +. +..|. +++++.|..+..|..|=
T Consensus 16 ~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~Irll-FD----GdRLd-p~~tp~DlemeD~D~ID 78 (82)
T 3goe_A 16 SSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLE-FE----GEWLD-PNDQVQSTELEDEDQVS 78 (82)
T ss_dssp ESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEE-ET----TEECC-TTSBGGGSSCCTTCEEE
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEE-Ec----CcccC-ccCChhhhCCcCCceee
Confidence 455566889999999999999999999999987 78877 32 23354 45899999998887653
No 124
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=58.81 E-value=17 Score=33.96 Aligned_cols=32 Identities=6% Similarity=0.057 Sum_probs=29.6
Q ss_pred ecCCCeEEEEEccCCcHHHHHHHHHHHcCCCC
Q 002138 205 SQETNSLLVKISLEDNKVDLYKRACNLFISVS 236 (960)
Q Consensus 205 ~~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~ 236 (960)
..|+...++.++-..++.++...||..++|..
T Consensus 18 llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n 49 (128)
T 2kc2_A 18 MLDGTVKTIMVDDSKTVTDMLMTICARIGITN 49 (128)
T ss_dssp CTTSCEEEEEEEECSSHHHHHHHHHHHHTCCC
T ss_pred cCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCC
Confidence 46888999999999999999999999999984
No 125
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=55.47 E-value=21 Score=30.50 Aligned_cols=66 Identities=8% Similarity=-0.007 Sum_probs=49.9
Q ss_pred cCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceE-EEEecCCccccccccccccccccccCCCCEEEE
Q 002138 206 QETNSLLVKISLEDNKVDLYKRACNLFISVSEMLY-IWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFL 273 (960)
Q Consensus 206 ~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~R-LW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Ill 273 (960)
..+..+.++++..-|+++|...+.+.++++..... -| ..-.++..+|.+ +.+|.|.++..|..+.+
T Consensus 14 y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~-irv~NK~~~L~~-~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 14 YNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHW-IRVVNKDKVFSG-ECKLSDCGITNGDRLEI 80 (81)
T ss_dssp TTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCE-EEEGGGTEEEET-TSBTGGGTCCTTCEEEE
T ss_pred cCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCE-EEEecCCEEEcC-CCEEeeCCcCCCCEEEE
Confidence 45778999999999999999999999999853222 23 222345566665 47899999999987765
No 126
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=52.16 E-value=31 Score=30.10 Aligned_cols=64 Identities=6% Similarity=-0.069 Sum_probs=46.8
Q ss_pred ecCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEE
Q 002138 205 SQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQ 274 (960)
Q Consensus 205 ~~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE 274 (960)
.++....++.++...++.++.+.+|+.|++++++..|-.. ...+ |....+.-+||-.|..+-|.
T Consensus 16 ~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~-----~k~l-DLSlpfRlsgLpnnAkLELv 79 (90)
T 2al3_A 16 APNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQ-----RTVL-DLSLQWRFANLPNNAKLEMV 79 (90)
T ss_dssp CTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEET-----TEEE-SSSCBHHHHCCCSSCEEEEE
T ss_pred cCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeC-----CEec-cccceeEecCCCCCCEEEEE
Confidence 3556678999999999999999999999999887766631 1222 33445556677777776663
No 127
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=48.62 E-value=3.7 Score=41.12 Aligned_cols=59 Identities=10% Similarity=0.155 Sum_probs=0.0
Q ss_pred CCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEee
Q 002138 208 TNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQV 277 (960)
Q Consensus 208 ~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~ 277 (960)
+..+++.++..+||.+|+.+|....+||++++||. +. ...|.|. .+|. .+.+|-|-++.
T Consensus 10 GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLI-f~----GK~LeD~-~TLs-----~~STLhLvlRL 68 (189)
T 2xzm_9 10 GETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLV-NN----GFIAPNT-ELVT-----DDVTYYLSLKL 68 (189)
T ss_dssp ----------------------------------------------------------------------
T ss_pred CCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEE-ec----CeECCCC-Cccc-----CCCEEEEEEec
Confidence 45678889999999999999999999999999998 32 2456663 5666 45556665563
No 128
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.61 E-value=37 Score=29.16 Aligned_cols=65 Identities=12% Similarity=0.125 Sum_probs=49.2
Q ss_pred EEEEeeecC-CCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccC
Q 002138 199 QIRLSVSQE-TNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAK 266 (960)
Q Consensus 199 ~l~l~~~~~-~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~ 266 (960)
.+|+.++.. ++...+.+|..-++.+|.-.||+.-+++++.+-|..- ....+.|+ .+++|.|.||.
T Consensus 10 TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d--~~~~e~Ld-LskSLndlgir 75 (91)
T 2daj_A 10 TVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKD--YQSQEPLD-LTKSLNDLGLR 75 (91)
T ss_dssp CEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESC--SSCCCBCC-TTSCHHHHTCS
T ss_pred EEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecC--CCCCcccc-hhcchhhhhhh
Confidence 355555554 6677899999999999999999999999988877643 23334453 45799999986
No 129
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=48.52 E-value=53 Score=28.90 Aligned_cols=66 Identities=0% Similarity=0.055 Sum_probs=53.1
Q ss_pred eEEEEeeecCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEE
Q 002138 198 LQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEV 271 (960)
Q Consensus 198 l~l~l~~~~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~I 271 (960)
+.|++. .+++...+.+.+...++-|.+.-|+..+++...+|+.. . ...++. +.|..++++..|..|
T Consensus 22 IniKV~--~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlf-D----G~rI~~-~~TP~~L~meD~DiI 87 (95)
T 2l76_A 22 FPLKIR--CRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLF-G----ETELSP-TATPRTLKLGVADII 87 (95)
T ss_dssp EEEEEE--CSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEE-T----TEECCT-TSCHHHHTCCSSCEE
T ss_pred EEEEEE--cCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEE-C----CcCCCC-CCCHhHcCCCCCCEE
Confidence 677775 45788999999999999999999999999999999883 2 233444 478999998877765
No 130
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=48.13 E-value=28 Score=30.61 Aligned_cols=41 Identities=7% Similarity=-0.100 Sum_probs=35.0
Q ss_pred EeeecCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEE
Q 002138 202 LSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIW 242 (960)
Q Consensus 202 l~~~~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW 242 (960)
++-........+.+...+|+..+++++.+..+|+++++||-
T Consensus 17 Vf~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL 57 (94)
T 4efo_A 17 VFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELI 57 (94)
T ss_dssp EEETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEE
T ss_pred EEEcccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHH
Confidence 44445566778999999999999999999999999988877
No 131
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=43.79 E-value=4.9 Score=40.71 Aligned_cols=68 Identities=10% Similarity=0.130 Sum_probs=0.0
Q ss_pred eEEEEeeecCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEE
Q 002138 198 LQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFL 273 (960)
Q Consensus 198 l~l~l~~~~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Ill 273 (960)
+.|++ ..++..+.+.|.+..++..|++..|+..+++...+|+.. .+ ..+++ +.|++++++..|..|=+
T Consensus 22 InLKV--~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLF-DG----qRI~d-ddTPadL~MEDGDtIDV 89 (227)
T 3v7o_A 22 INLKV--SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY-DG----IRIQA-DQTPEDLDMEDNDIIEA 89 (227)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred EEEEE--eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEE-CC----EecCC-CCCHHHcCCCCCCEEEE
Confidence 45666 446778899999999999999999999999999999873 22 33554 47999999988877654
No 132
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=43.03 E-value=97 Score=25.55 Aligned_cols=43 Identities=16% Similarity=0.213 Sum_probs=32.4
Q ss_pred eEEEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhcccCCcccee
Q 002138 526 MTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLL 572 (960)
Q Consensus 526 ~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~ 572 (960)
|.|++-..++. .+.+.++...++.+|+..+++..+++....-+
T Consensus 4 m~i~vk~~~g~----~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL 46 (85)
T 3mtn_B 4 MQIFVKTLTGK----TITLEVEPSDTIENVKAKIQDKEGIPPDQQRL 46 (85)
T ss_dssp EEEEEECTTSC----EEEEEECTTCBHHHHHHHHHHHHCCCGGGCEE
T ss_pred EEEEEEcCCCC----EEEEEECCCCCHHHHHHHHHHHHCcChHHEEE
Confidence 55555555543 36788899999999999999999998655443
No 133
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=41.66 E-value=81 Score=26.94 Aligned_cols=62 Identities=13% Similarity=-0.077 Sum_probs=39.1
Q ss_pred eeEEeCCCCchHHHHHHHHhhcccCCccceeeeeeeccceeeecCCCccccc--cccCCCcEEE
Q 002138 542 FTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYRSKIFRVLDEPSDLLG--LIRDEDKLVA 603 (960)
Q Consensus 542 ~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~--~I~~~d~i~~ 603 (960)
..+.++...++.+|+..+....|+++..+-++..--...+.....+....|+ .|.++..|.+
T Consensus 17 ~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihl 80 (86)
T 4b6w_A 17 PEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHV 80 (86)
T ss_dssp EEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEE
T ss_pred EEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEE
Confidence 4678899999999999999999998766555433222333332333333443 3555555543
No 134
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=40.46 E-value=68 Score=28.17 Aligned_cols=56 Identities=20% Similarity=0.246 Sum_probs=37.1
Q ss_pred ceeEEeCCCCchHHHHHHHHhhcccCCccceeeeeeeccceeeecCCCccccc--cccCCCcEE
Q 002138 541 PFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYRSKIFRVLDEPSDLLG--LIRDEDKLV 602 (960)
Q Consensus 541 ~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~--~I~~~d~i~ 602 (960)
.+.+.|+...++.+|+..++...+++...+-++ |+. +.+.|....+. .|.+++.|+
T Consensus 23 ~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~---~~g---k~L~D~~~tL~~ygI~~g~~l~ 80 (102)
T 1v5o_A 23 TFSLQVNPDFELSNFRVLCELESGVPAEEAQIV---YME---QLLTDDHCSLGSYGLKDGDMVV 80 (102)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEE---ETT---EEECCSSSBHHHHTCCTTEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEE---ECC---EECCCCcccHHHCCCCCCCEEE
Confidence 466889999999999999999999986554443 333 23454433343 355555543
No 135
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=40.44 E-value=74 Score=34.94 Aligned_cols=73 Identities=7% Similarity=0.068 Sum_probs=55.1
Q ss_pred eEEEEeeecCCCeEEEEEccCCcHHHHHHHHHHHcCC----CCCceEEEEecC-CccccccccccccccccccCCCCEEE
Q 002138 198 LQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFIS----VSEMLYIWDFSG-QTTQFLMNDRVTMSDDFSAKPGEEVF 272 (960)
Q Consensus 198 l~l~l~~~~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i----~~e~~RLW~~~~-~~~~~lL~d~~~tL~d~~l~~~q~Il 272 (960)
+.|++... +...+++|....||.++.+++++.+.- +.++.-||-..+ ..+..-|... +||+..++..|..+.
T Consensus 4 ~~~~~~~~--~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~-~~l~~y~~~~~~~l~ 80 (371)
T 3ivf_A 4 LSLKISIG--NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAG-KALDYYMLRNGDTME 80 (371)
T ss_dssp EEEEEEET--TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTT-SBGGGGTCCTTCEEE
T ss_pred EEEEEEec--ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCC-CCHHHhCCCCCceee
Confidence 56677654 677899999999999999999999853 567899997655 2334446554 599999998876544
Q ss_pred E
Q 002138 273 L 273 (960)
Q Consensus 273 l 273 (960)
.
T Consensus 81 ~ 81 (371)
T 3ivf_A 81 Y 81 (371)
T ss_dssp E
T ss_pred c
Confidence 3
No 136
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=40.39 E-value=34 Score=34.60 Aligned_cols=71 Identities=17% Similarity=0.132 Sum_probs=44.1
Q ss_pred cccccccccCCCccchHHHHHHHhcChHHHHHHHhccccccccCCCCCCchHHHHHHHHHHHHhcCCCCCccChHHHHHH
Q 002138 336 LLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKLK 415 (960)
Q Consensus 336 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~al~~L~~~l~~~~~~~i~P~~f~~~ 415 (960)
..|.+=|.=.-|.||+||++=.|=++... + +++..++ .. =.|..|...
T Consensus 10 ~nG~~vLkq~dNNCwVNaa~l~LQ~~~~~----~-----------------------~~aw~~f-~~----Gd~~~fV~~ 57 (211)
T 3mp2_A 10 LNGKIILKQGDNNCWINACCYQLQAFDFF----N-----------------------NEAWEKF-KK----GDVMDFVNL 57 (211)
T ss_dssp ETTEEEECCCTTCHHHHHHHHHHTTCTTC----C-----------------------CHHHHHH-TT----TCCHHHHHH
T ss_pred ECCEEEEEccCCCcHHHHHHHHHHhcChh----H-----------------------HHHHHHH-hC----CChHHHHHH
Confidence 45666677778999999998777665543 1 1111111 11 145555554
Q ss_pred HhhcCCCCCCCCCCCHHHHHHHHH
Q 002138 416 LANFAPQFSGYNQHDSQEFLAFLL 439 (960)
Q Consensus 416 l~~~~~~F~~~~QQDA~EfL~~LL 439 (960)
+-... ...-++--||+++|..||
T Consensus 58 ~Ya~~-~~~~G~~gDa~~~L~~Ll 80 (211)
T 3mp2_A 58 CYAAT-TLARGHSGDAEYLLELML 80 (211)
T ss_dssp HHHHH-TCCTTSCCCHHHHHHHHH
T ss_pred HHHHc-CCCCCCCcCHHHHHHHHH
Confidence 43332 344568899999999998
No 137
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=40.19 E-value=1.8e+02 Score=24.99 Aligned_cols=34 Identities=6% Similarity=-0.245 Sum_probs=28.5
Q ss_pred cceeEEeCCCCchHHHHHHHHhhcccCCccceee
Q 002138 540 APFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLV 573 (960)
Q Consensus 540 ~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~ 573 (960)
...++.++...++.+|+..+....|++...+-+.
T Consensus 19 ~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~ 52 (95)
T 1v6e_A 19 FRSEKRYSRSLTIAEFKCKLELVVGSPASCMELE 52 (95)
T ss_dssp SCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCE
T ss_pred eeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEE
Confidence 4578899999999999999999999986654443
No 138
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=38.14 E-value=1.2e+02 Score=26.57 Aligned_cols=58 Identities=17% Similarity=0.139 Sum_probs=39.1
Q ss_pred ceeEEeCCCCchHHHHHHHHhhcccCCccceeeeeeeccceeeecCCCcccc-ccccCCCcEEEE
Q 002138 541 PFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYRSKIFRVLDEPSDLL-GLIRDEDKLVAY 604 (960)
Q Consensus 541 ~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~-~~I~~~d~i~~y 604 (960)
+..|.+..+.++.+|++.++...|++.....+ +|..+. ++|....- -.|.+++.|..|
T Consensus 33 k~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrL---if~Gk~---LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 33 KVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVL---QKGGSV---LKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHTCCGGGEEE---EETTEE---CCTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEECCcCHHHHHHHHHHHHhCCCHHHEEE---EeCCEE---ccCcCCHHHcCCCCCCEEEEE
Confidence 46678888999999999999999998655443 344443 44432211 246777776655
No 139
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=37.81 E-value=13 Score=34.88 Aligned_cols=20 Identities=15% Similarity=0.277 Sum_probs=0.0
Q ss_pred ccccccCCCccchHHHHHHH
Q 002138 339 LTGLRNLGNTCFMNSAIQCL 358 (960)
Q Consensus 339 ~~GL~NlGNTCYmNSvLQ~L 358 (960)
+.|+.|.-++|++|++||..
T Consensus 13 fys~pN~hdncWLNtilQLf 32 (167)
T 1qmy_A 13 FYSRPNNHDNAWLNAILQLF 32 (167)
T ss_dssp CCCCCCSSSCHHHHHHHHHH
T ss_pred cccCCCCCcchHHHHHHHHH
No 140
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=36.84 E-value=1.6e+02 Score=26.10 Aligned_cols=61 Identities=11% Similarity=-0.002 Sum_probs=40.2
Q ss_pred CcceeEEeCCCCchHHHHHHHHhhcccCCccceeeeeeeccceeeecCCCccccc--cccCCCcEEEEEc
Q 002138 539 PAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYRSKIFRVLDEPSDLLG--LIRDEDKLVAYRL 606 (960)
Q Consensus 539 p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~--~I~~~d~i~~ye~ 606 (960)
-..+.+.|..+.++.+|+..++...|+++...-+ +|+.++ +.|. ..++ .|.++..|.+-.+
T Consensus 29 ~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrL---I~~GKi---L~D~-~TL~~y~I~~gsti~vl~l 91 (100)
T 1wju_A 29 DRKNLLETRLHITGRELRSKIAETFGLQENYIKI---VINKKQ---LQLG-KTLEEQGVAHNVKAMVLEL 91 (100)
T ss_dssp SSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEE---EETTEE---CCTT-SBHHHHTCCSSEEEEEECC
T ss_pred CcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEE---EeCCeE---CCCC-CcHHHcCCCCCCEEEEEEE
Confidence 3567888999999999999999999997654433 255554 3432 2332 3556666544443
No 141
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=36.52 E-value=1.4e+02 Score=27.21 Aligned_cols=34 Identities=15% Similarity=0.038 Sum_probs=28.4
Q ss_pred cceeEEeCCCCchHHHHHHHHhhcccCCccceee
Q 002138 540 APFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLV 573 (960)
Q Consensus 540 ~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~ 573 (960)
...++.++...++.+|+..|...+|++...+-+.
T Consensus 18 ~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~ 51 (122)
T 1t0y_A 18 FPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQ 51 (122)
T ss_dssp SCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEE
T ss_pred ccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEE
Confidence 4578899999999999999999999986654443
No 142
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=35.97 E-value=88 Score=31.50 Aligned_cols=71 Identities=10% Similarity=0.128 Sum_probs=52.6
Q ss_pred eEEEEeeecCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEe
Q 002138 198 LQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQ 276 (960)
Q Consensus 198 l~l~l~~~~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k 276 (960)
+.|++. .+++.+.+.+.+.+++.-|++..|+..+++...+|+-. .+ ..+.. ++|..++.+..+..|-+-.+
T Consensus 22 i~ikv~--~~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~f-dG----~~i~~-~~Tpk~L~~ed~d~I~~~~e 92 (209)
T 3uf8_A 22 INLKVS--DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY-DG----IRIQA-DQTPEDLDMEDNDIIEAHRE 92 (209)
T ss_dssp EEEEEE--CSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEE-TT----EECCT-TCCTTTTTCCTTEEEEEECS
T ss_pred EEEEEE--cCCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEE-CC----EeccC-CCChHHhhhcccccchhhcc
Confidence 556653 35677889999999999999999999999999999873 22 22333 46778888777766654333
No 143
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=35.90 E-value=1.4e+02 Score=26.93 Aligned_cols=71 Identities=4% Similarity=-0.092 Sum_probs=50.0
Q ss_pred eeecCCCeEEEEEccCCcHHHHHHHHHHHc--------CCCCCceEEEEecCCccccccccccccccccccCCCCEEEE
Q 002138 203 SVSQETNSLLVKISLEDNKVDLYKRACNLF--------ISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFL 273 (960)
Q Consensus 203 ~~~~~~~~~~~~~Sk~~Ti~eL~~~v~~lf--------~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~Ill 273 (960)
|..+++-.+.+.+|+..|+.++|..+-+.- -.+++....-..+.....+.+.|+.+.|.|..+..+-.-++
T Consensus 24 ~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~pf~piLklv 102 (108)
T 2v1y_A 24 CLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLFQPFLKVI 102 (108)
T ss_dssp EECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGSCBSSSEEEEE
T ss_pred EEcCcEEEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCCccceEEEEecCCceEEEeEcCceEEEeccccceEEEEE
Confidence 446888888999999999999999886652 23355666666655445566778778888887764443334
No 144
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=33.85 E-value=1.3e+02 Score=25.55 Aligned_cols=42 Identities=14% Similarity=0.187 Sum_probs=31.2
Q ss_pred eEEEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhcccCCccce
Q 002138 526 MTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKL 571 (960)
Q Consensus 526 ~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l 571 (960)
|.|++-..+|. .+.+.+....++.+|+..+++..+++....-
T Consensus 2 m~i~vk~~~g~----~~~~~v~~~~TV~~LK~~i~~~~gip~~~qr 43 (96)
T 3k9o_B 2 MQIFVKTLTGK----TITLEVEPSDTIENVKAKIQDKEGIPPDQQR 43 (96)
T ss_dssp CEEEEEETTCC----EEEEECCTTCBHHHHHHHHHHHHCCCGGGEE
T ss_pred cEEEEEeCCCC----EEEEEECCCCCHHHHHHHHHhhhCCChhHEE
Confidence 44555555553 3678888999999999999999999765443
No 145
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.30 E-value=1.1e+02 Score=26.60 Aligned_cols=60 Identities=7% Similarity=0.035 Sum_probs=41.0
Q ss_pred CCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEeecCcccCc
Q 002138 218 EDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQVHGFSDSV 284 (960)
Q Consensus 218 ~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~~g~w~~~ 284 (960)
..++.||+.++|..|.++...++|-...+.+. +++. ..+ ....++++++-+..+-.|...
T Consensus 27 A~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~---VddE-eyF---~tLp~nT~lmvL~~ge~W~p~ 86 (91)
T 2eel_A 27 ASSLQELISKTLDALVIATGLVTLVLEEDGTV---VDTE-EFF---QTLGDNTHFMILEKGQKWMPS 86 (91)
T ss_dssp ESSHHHHHHHHHHHTTCSSSCEEEEETTTCCB---CCCH-HHH---TTSCSSEEEEEEETTCCCCCC
T ss_pred cCCHHHHHHHHHHHhcCCCCCcEEEEeeCCcE---Eech-hhh---hhCCCCCEEEEEcCCCccCCC
Confidence 56899999999999999877888886654442 2222 122 223367788777777788653
No 146
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=30.93 E-value=2.6e+02 Score=24.43 Aligned_cols=73 Identities=16% Similarity=0.096 Sum_probs=52.2
Q ss_pred EEEEeeecCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEee
Q 002138 199 QIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQV 277 (960)
Q Consensus 199 ~l~l~~~~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~ 277 (960)
.++++ .++++...+.+-...|+++-..++.+.-++.++.+.++.....++.. -+.+. |++.-.|.++.+|+..
T Consensus 19 ~irvh-LPNqQrT~V~VrpG~tlrdAL~KaLk~R~L~pe~C~Vy~~~~~~~~~--IdWdt---Di~~L~~eEL~Ve~ld 91 (95)
T 2l05_A 19 IVRVF-LPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVYRIQDGEKKP--IGWDT---DISWLTGEELHVEVLE 91 (95)
T ss_dssp EEEEE-ETTTEEEEEECCTTCBHHHHHHHHHHHHTCCGGGEEEEEEETTEEEE--ECTTS---BGGGGTTCEEEEEESC
T ss_pred EEEEE-CCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHcEEEEcCCCCccc--cchhH---hhhhccCcEEEEEEec
Confidence 45554 37777888999999999999999999999999999998654332222 12222 2333458899998753
No 147
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=30.31 E-value=2.6e+02 Score=23.99 Aligned_cols=73 Identities=10% Similarity=0.096 Sum_probs=52.4
Q ss_pred EEEEeeecCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccccccccccccccccccCCCCEEEEEEee
Q 002138 199 QIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQV 277 (960)
Q Consensus 199 ~l~l~~~~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~~lL~d~~~tL~d~~l~~~q~IllE~k~ 277 (960)
.++++ .++++...+++-...|+++-..++.+.-++.++.+.++.....++.. -+.+. |++.-.+.+|.+|+..
T Consensus 9 ~irvh-LPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy~~~~~~~~~--IdWdt---Di~~L~~eEL~Ve~ld 81 (86)
T 1wxm_A 9 TVKVY-LPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVYRLIKGRKTV--TAWDT---AIAPLDGEELIVEVLS 81 (86)
T ss_dssp EEEEE-CSSSCEEEEECCSSCBSHHHHHHHHHTTTCCSSSEEEEEESSSCEEE--ECSSS---BSTTCSSCEEEEEECC
T ss_pred eEEEE-CCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEEEcCCCCccc--cchhH---hhhhccCcEEEEEEcc
Confidence 34554 47778889999999999999999999999999999999664332221 12221 2333458889998763
No 148
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=29.88 E-value=92 Score=26.68 Aligned_cols=45 Identities=4% Similarity=-0.085 Sum_probs=37.0
Q ss_pred eEEEEeeecCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEec
Q 002138 198 LQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFS 245 (960)
Q Consensus 198 l~l~l~~~~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~ 245 (960)
+.+++ +.. ..+.+.+.+.-+..+|..++++.+.++.+...|....
T Consensus 6 ~~VKV--~~~-~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~ 50 (83)
T 1oey_A 6 YTLKV--HYK-YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP 50 (83)
T ss_dssp EEEEE--ESS-SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred EEEEE--EEE-EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence 44554 343 5788999999999999999999999999888888554
No 149
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=29.42 E-value=1.9e+02 Score=25.29 Aligned_cols=34 Identities=12% Similarity=0.014 Sum_probs=28.5
Q ss_pred cceeEEeCCCCchHHHHHHHHhhcccCCccceee
Q 002138 540 APFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLV 573 (960)
Q Consensus 540 ~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~ 573 (960)
...++.++...++.+|+..+....|+++..+-++
T Consensus 27 ~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi 60 (97)
T 2kj6_A 27 FSADARFSPQMSVEAVKEKLWKKCGTSVNSMALE 60 (97)
T ss_dssp CCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEE
T ss_pred eEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEE
Confidence 3477889999999999999999999987665443
No 150
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=29.35 E-value=1.2e+02 Score=26.18 Aligned_cols=62 Identities=19% Similarity=0.102 Sum_probs=38.6
Q ss_pred eeEEeCCCCchHHHHHHHHhhcccCCccceeeeeeec-cceeeecCCCccccc--cccCCCcEEE
Q 002138 542 FTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYR-SKIFRVLDEPSDLLG--LIRDEDKLVA 603 (960)
Q Consensus 542 ~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~e~~~-~~~~~~~~~~~~~~~--~I~~~d~i~~ 603 (960)
..+.+++..++.+|+..+...+|++...+-+....-. ......+.+....|. .|.+++.|.+
T Consensus 25 ~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V 89 (97)
T 1wjn_A 25 LEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLV 89 (97)
T ss_dssp EEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEE
Confidence 5577889999999999999999998765444332111 112222444445554 3556666654
No 151
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=29.29 E-value=1.1e+02 Score=26.01 Aligned_cols=46 Identities=15% Similarity=0.186 Sum_probs=36.1
Q ss_pred ccceEEEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhcccCCcccee
Q 002138 523 MRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLL 572 (960)
Q Consensus 523 ~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~ 572 (960)
...|.+++-..+|. .+.+.+....++.+|+..+....|++....-+
T Consensus 15 ~~~m~i~Vk~~~g~----~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL 60 (91)
T 3v6c_B 15 RGSMQIFVNTLTGT----HITLEVEPSDTIENVKAKIQDKEGIPPDQQRL 60 (91)
T ss_dssp CCSEEEEEECTTSC----EEEEEECTTCBHHHHHHHHHHHHCCCGGGCEE
T ss_pred CCeEEEEEEeCCCC----EEEEEECCCCCHHHHHHHHHhhhCCChhhEEE
Confidence 45677777766664 36788999999999999999999998655433
No 152
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.93 E-value=1.2e+02 Score=24.67 Aligned_cols=45 Identities=22% Similarity=0.245 Sum_probs=33.4
Q ss_pred cceEEEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhcccCCcccee
Q 002138 524 RTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLL 572 (960)
Q Consensus 524 ~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~ 572 (960)
..|.+++-..+|. .+.+.++.+.++.+|++.+++..+++....-+
T Consensus 6 ~~m~i~vk~~~g~----~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL 50 (81)
T 2dzi_A 6 SGMQLTVKALQGR----ECSLQVPEDELVSTLKQLVSEKLNVPVRQQRL 50 (81)
T ss_dssp SSEEEEEEETTSC----EEEEEECSSCBHHHHHHHHHHHTCCCTTTCEE
T ss_pred CcEEEEEEeCCCC----EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE
Confidence 3456666555553 35788999999999999999999997655443
No 153
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=28.76 E-value=77 Score=27.51 Aligned_cols=48 Identities=19% Similarity=0.207 Sum_probs=34.9
Q ss_pred CCccceEEEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhcccCCcccee
Q 002138 521 TTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLL 572 (960)
Q Consensus 521 ~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~ 572 (960)
.....|.|++-..+|.. +.+.+....++.+|+..+....+++....-+
T Consensus 18 ~~~~~m~I~Vk~~~g~~----~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL 65 (98)
T 4hcn_B 18 FQGRPMQIFVKTLTGKT----ITLEVESSDTIDNVKSKIQDKEGIPPDQQRL 65 (98)
T ss_dssp ----CCEEEEEETTCCE----EEEECCTTCBHHHHHHHHHHHHCCCGGGCEE
T ss_pred CCCCeEEEEEEeCCCCE----EEEEECCCCcHHHHHHHHHHHhCCChhHEEE
Confidence 33456777777666643 6788999999999999999999988655433
No 154
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=28.76 E-value=1.4e+02 Score=26.50 Aligned_cols=43 Identities=16% Similarity=0.134 Sum_probs=32.5
Q ss_pred eEEEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhcccCCcccee
Q 002138 526 MTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLL 572 (960)
Q Consensus 526 ~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~ 572 (960)
|.|++-...|. .+++.+....++.++++.++...|++.....+
T Consensus 29 m~I~VKtl~Gk----~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrL 71 (100)
T 1uh6_A 29 IEVVCNDRLGK----KVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVL 71 (100)
T ss_dssp EEEEEECSSSS----CEEEEEETTSBHHHHHHHHHHHHCCCGGGCEE
T ss_pred EEEEEECCCCC----EEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEE
Confidence 56666655553 36688889999999999999999997554433
No 155
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=28.08 E-value=82 Score=26.47 Aligned_cols=45 Identities=16% Similarity=0.196 Sum_probs=34.1
Q ss_pred cceEEEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhcccCCcccee
Q 002138 524 RTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLL 572 (960)
Q Consensus 524 ~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~ 572 (960)
..|.+++-..+|.. +.+.+..+.++.+|+..++...+++...+-+
T Consensus 16 ~~m~i~Vk~~~g~~----~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL 60 (88)
T 4eew_A 16 DSLEVLVKTLDSQT----RTFIVGAQMNVKEFKEHIAASVSIPSEKQRL 60 (88)
T ss_dssp CEEEEEEEETTSCE----EEEEEETTCBHHHHHHHHHHHHTCCGGGEEE
T ss_pred CeEEEEEEcCCCCE----EEEEECCCCCHHHHHHHHHHHhCCCHHHEEE
Confidence 45666666666543 5678889999999999999999997655433
No 156
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=27.51 E-value=67 Score=32.48 Aligned_cols=29 Identities=24% Similarity=0.310 Sum_probs=24.6
Q ss_pred ecCCCCCeEEEEEeccccchhhhhhhhhccccccccCCCcEEEEcCCcceecC
Q 002138 887 YGGMGGGHYTAFVDIDYHSAFKQYEYLKTQITSVQLGHKRWFEFDDDRVYPVS 939 (960)
Q Consensus 887 ~G~l~gGHYtAy~k~~~~~~~~~~~~~~~~~~~~~~~~~~Wy~fdDs~Vs~vs 939 (960)
.|+.++|||+.++.. .+ +.+|=..+.+++
T Consensus 167 ~G~~~~GHY~~~~~~----------------------~~--~~vDG~~~~~~~ 195 (211)
T 3mp2_A 167 TGTTQNGHYMVDDIE----------------------HG--YCVDGMGIKPLK 195 (211)
T ss_dssp ESCTTTCEEEEEETT----------------------TT--EEEETTEEECCC
T ss_pred EcCCCCceEEEEecc----------------------cc--eEEeCCceeEcc
Confidence 799999999999765 33 889999988887
No 157
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=27.48 E-value=1.1e+02 Score=25.44 Aligned_cols=45 Identities=11% Similarity=0.222 Sum_probs=34.0
Q ss_pred cceEEEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhcccCCcccee
Q 002138 524 RTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLL 572 (960)
Q Consensus 524 ~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~ 572 (960)
..|.+++-..+|. .+.+.+....++.+|+..++...+++....-+
T Consensus 11 ~~m~i~vk~~~g~----~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL 55 (88)
T 3dbh_I 11 GSMLIKVKTLTGK----EIEIDIEPTDKVERIKERVEEKEGIPPQQQRL 55 (88)
T ss_dssp CCEEEEEECTTSC----EEEEEECTTCBHHHHHHHHHHHHCCCGGGCCE
T ss_pred CcEEEEEEcCCCC----EEEEEECCCCCHHHHHHHHHHHHCcCHHHEEE
Confidence 4566666665554 36788899999999999999999998654433
No 158
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=27.43 E-value=85 Score=26.61 Aligned_cols=44 Identities=18% Similarity=0.255 Sum_probs=33.8
Q ss_pred ceEEEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhcccCCcccee
Q 002138 525 TMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLL 572 (960)
Q Consensus 525 ~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~ 572 (960)
.|.+++...+|.. +.+.++.+.++.+|++.+++..+++....-+
T Consensus 9 ~~~i~v~~~~G~~----~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL 52 (88)
T 1sif_A 9 GLQLFIKTLTGKT----FTVEMEPSDTIENLKAKIQDKEGIPPDQQRL 52 (88)
T ss_dssp -CEEEEEETTSCE----EEEECCTTSBHHHHHHHHHHHHCCCGGGCEE
T ss_pred ceEEEEEeCCCCE----EEEEECCCChHHHHHHHHHHHHCcChhhEEE
Confidence 3667777777643 6788899999999999999999988654433
No 159
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=26.78 E-value=98 Score=26.09 Aligned_cols=44 Identities=16% Similarity=0.190 Sum_probs=34.2
Q ss_pred ceEEEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhcccCCcccee
Q 002138 525 TMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLL 572 (960)
Q Consensus 525 ~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~ 572 (960)
.|.+++-...|. .+.+.++.+.++.+|+..++...|++...+-+
T Consensus 10 ~~~i~vk~l~g~----~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL 53 (84)
T 2kk8_A 10 HMKFLVENLNGS----SFELEVDYRDTLLVVKQKIERSQHIPVSKQTL 53 (84)
T ss_dssp CEEEEEEETTSC----EEEEEECTTSBHHHHHHHHHHHHTCCGGGEEE
T ss_pred ceEEEEEecCCc----EEEEEECCCChHHHHHHHHHHHHCcChHHEEE
Confidence 466777666664 36788999999999999999999987654433
No 160
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=26.69 E-value=53 Score=38.22 Aligned_cols=37 Identities=5% Similarity=0.167 Sum_probs=33.1
Q ss_pred eEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecC
Q 002138 210 SLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSG 246 (960)
Q Consensus 210 ~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~ 246 (960)
..++.+-+..|+.+|++.+-+.+|++.+.+|||....
T Consensus 37 ~~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~ 73 (530)
T 2ylm_A 37 YTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQA 73 (530)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEE
T ss_pred cceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEc
Confidence 3578899999999999999999999999999997643
No 161
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=26.20 E-value=93 Score=24.93 Aligned_cols=31 Identities=13% Similarity=0.150 Sum_probs=25.5
Q ss_pred eeEEeCCCCchHHHHHHHHhhcccCCcccee
Q 002138 542 FTVTVPKYGRFQDLIDALSTKCFLRNHEKLL 572 (960)
Q Consensus 542 ~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~ 572 (960)
+.+.++.+.++.+|++.+++..+++....-+
T Consensus 13 ~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L 43 (76)
T 3a9j_A 13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRL 43 (76)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcCHHHeEE
Confidence 5678889999999999999999987654433
No 162
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=24.67 E-value=1.1e+02 Score=24.58 Aligned_cols=31 Identities=6% Similarity=0.166 Sum_probs=25.4
Q ss_pred eeEEeCCCCchHHHHHHHHhhcccCCcccee
Q 002138 542 FTVTVPKYGRFQDLIDALSTKCFLRNHEKLL 572 (960)
Q Consensus 542 ~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~ 572 (960)
+.+.++.+.++.+|+..+++..+++....-+
T Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L 43 (76)
T 1ndd_A 13 IEIDIEPTDKVERIKERVEEKEGIPPQQQRL 43 (76)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGEEE
T ss_pred EEEEECCCChHHHHHHHHHHHHCcChHHEEE
Confidence 5678888999999999999999987654433
No 163
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=24.63 E-value=1.3e+02 Score=31.77 Aligned_cols=67 Identities=16% Similarity=0.273 Sum_probs=53.7
Q ss_pred CccceEEEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhcccCCccceeeeeeecc-ceeeecCCCcccc
Q 002138 522 TMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYRS-KIFRVLDEPSDLL 592 (960)
Q Consensus 522 ~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~e~~~~-~~~~~~~~~~~~~ 592 (960)
..+.+.|.|+..||. ...|.|+...+..|+++.|....++.+.+...++|++.+ .+-+.+.+-+..+
T Consensus 28 ~~~k~ivkv~~~D~s----s~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~V~ 95 (281)
T 4gmv_A 28 QVKKLVIRVHMSDDS----SKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLV 95 (281)
T ss_dssp SSCEEEEEEEETTSC----EEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSBHH
T ss_pred CcccEEEEEEecCCC----EEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchhHH
Confidence 345677888888885 468899999999999999999888888889999999876 5777777644443
No 164
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=24.59 E-value=2.5e+02 Score=24.23 Aligned_cols=33 Identities=15% Similarity=-0.047 Sum_probs=27.5
Q ss_pred ceeEEeCCCCchHHHHHHHHhhcccCCccceee
Q 002138 541 PFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLV 573 (960)
Q Consensus 541 ~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~ 573 (960)
..++.++...++.+|+..+....|+++..+-++
T Consensus 29 ~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~ 61 (95)
T 2kjr_A 29 AFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQ 61 (95)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEE
T ss_pred EEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEE
Confidence 467788899999999999999999987654443
No 165
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=24.42 E-value=81 Score=26.09 Aligned_cols=43 Identities=14% Similarity=0.179 Sum_probs=31.9
Q ss_pred eEEEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhcccCCcccee
Q 002138 526 MTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLL 572 (960)
Q Consensus 526 ~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~ 572 (960)
|.+++-..++. .+.+.++...++.+|+..+++..+++....-+
T Consensus 4 m~i~vk~~~g~----~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL 46 (85)
T 3n3k_B 4 MRIVVKTLMGR----TIILEVEPSDTIENVKAKIQDKEGIPPDQQRL 46 (85)
T ss_dssp CEEEEECGGGC----EEEEECCTTCBHHHHHHHHHHHHCCCGGGEEE
T ss_pred EEEEEEeCCCC----EEEEEECCCCcHHHHHHHHHHHHCCCHHHEEE
Confidence 45555554443 36778889999999999999999998655433
No 166
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=24.42 E-value=22 Score=27.37 Aligned_cols=14 Identities=57% Similarity=1.322 Sum_probs=11.4
Q ss_pred CCCCCCCCccccCc
Q 002138 804 GPEDMWYCPRCKKH 817 (960)
Q Consensus 804 ~~~d~wyC~~Ck~~ 817 (960)
+.+|.|.|..|+++
T Consensus 7 ~~eD~WkC~~C~k~ 20 (53)
T 2cr8_A 7 GSEDEWQCTECKKF 20 (53)
T ss_dssp CCSCCEECSSSCCE
T ss_pred CCcceeeccccccc
Confidence 45788999999874
No 167
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=24.26 E-value=61 Score=31.98 Aligned_cols=31 Identities=35% Similarity=0.461 Sum_probs=23.6
Q ss_pred EEEEEeec-CCCCCeEEEEEeccccchhhhhhhhhccccccccCCCcEEEEc
Q 002138 881 YAISNHYG-GMGGGHYTAFVDIDYHSAFKQYEYLKTQITSVQLGHKRWFEFD 931 (960)
Q Consensus 881 ~AVinH~G-~l~gGHYtAy~k~~~~~~~~~~~~~~~~~~~~~~~~~~Wy~fd 931 (960)
.||||--| ..||=|+.|+|-+ ....+.|.||
T Consensus 40 ~AIVNTg~retGGvHWiA~Aw~--------------------P~s~~~YmFD 71 (204)
T 4ekf_A 40 CAIVNTAGRETGGVHWMAFAWN--------------------PRSKTCYLFE 71 (204)
T ss_dssp EEEEESCC----CCCEEEEEEE--------------------TTTTEEEEEC
T ss_pred eeEEecCCcccCceeEEEeEec--------------------CCcceEEEeC
Confidence 68999888 6788899999999 4667788876
No 168
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=23.02 E-value=1.5e+02 Score=25.84 Aligned_cols=46 Identities=17% Similarity=0.184 Sum_probs=34.5
Q ss_pred CccceEEEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhcccCCcccee
Q 002138 522 TMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLL 572 (960)
Q Consensus 522 ~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~ 572 (960)
....|.|++-...+. +.+.++...++.+|++.++...+++....-+
T Consensus 19 ~~~~m~I~Vk~~~g~-----~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL 64 (100)
T 1yqb_A 19 SPHLIKVTVKTPKDK-----EDFSVTDTCTIQQLKEEISQRFKAHPDQLVL 64 (100)
T ss_dssp CTTEEEEEEECSSCE-----EEEEEETTCBHHHHHHHHHHHHTCCGGGEEE
T ss_pred CCCeEEEEEEcCCCc-----EEEEECCCCcHHHHHHHHHHHHCcChhhEEE
Confidence 345577777666552 5788899999999999999999987554433
No 169
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=22.39 E-value=1.4e+02 Score=24.35 Aligned_cols=43 Identities=16% Similarity=0.083 Sum_probs=32.4
Q ss_pred eEEEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhcccCCcccee
Q 002138 526 MTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLL 572 (960)
Q Consensus 526 ~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~ 572 (960)
|.+++-..+|. .+.+.+....++.+|+..++...|++....-+
T Consensus 5 m~i~Vk~~~g~----~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL 47 (79)
T 3phx_B 5 LSILVRNNKGR----SSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWL 47 (79)
T ss_dssp EEEEEECTTSC----EEEEEECTTSBHHHHHHHHHHHHTCCGGGEEE
T ss_pred EEEEEEeCCCC----EEEEEECCcChHHHHHHHHHhhcCCCHHHEEE
Confidence 55556555554 35678889999999999999999998655433
No 170
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=21.97 E-value=1.3e+02 Score=25.49 Aligned_cols=41 Identities=10% Similarity=0.215 Sum_probs=30.3
Q ss_pred EEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhcccCCcccee
Q 002138 528 VTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLL 572 (960)
Q Consensus 528 v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~ 572 (960)
+++-..+|. .+.+.++.+.++.+|+..++...+++....-+
T Consensus 3 I~Vk~~~g~----~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL 43 (88)
T 4fbj_B 3 IKVKTLTGK----EIEIDIEPTDKVERIKERVEEKEGIPPQQQRL 43 (88)
T ss_dssp EEEEETTCC----EEEEECCTTCBHHHHHHHHHHHHCCCGGGCEE
T ss_pred EEEEcCCCC----EEEEEECCCCCHHHHHHHHHHHHCcChhHEEE
Confidence 444444443 35678889999999999999999988655443
No 171
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=21.43 E-value=1.5e+02 Score=26.39 Aligned_cols=45 Identities=16% Similarity=0.192 Sum_probs=34.4
Q ss_pred cceEEEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhcccCCcccee
Q 002138 524 RTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLL 572 (960)
Q Consensus 524 ~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~ 572 (960)
..|.|++-..+|. .+.+.+....++.+|+..+....+++....-+
T Consensus 34 ~~m~I~Vk~~~G~----~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL 78 (111)
T 3vdz_A 34 LAMQIFVKTLTGK----TITLEVEPSDTIENVKAKIQDKEGIPPDQQRL 78 (111)
T ss_dssp GCEEEEEECSSSC----EEEEEECTTCBHHHHHHHHHHHHCCCGGGEEE
T ss_pred ccEEEEEEeCCCC----EEEEEeCCCCCHHHHHHHHHHHhCCChHHEEE
Confidence 4566777666654 36788899999999999999999998654433
No 172
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=20.80 E-value=3.8e+02 Score=22.53 Aligned_cols=72 Identities=17% Similarity=0.085 Sum_probs=49.3
Q ss_pred EEEeeecCCCeEEEEEccCCcHHHHHHHHHHHcCCCCCceEEEEecCCccc-cccccccccccccccCCCCEEEEEE
Q 002138 200 IRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQ-FLMNDRVTMSDDFSAKPGEEVFLQL 275 (960)
Q Consensus 200 l~l~~~~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e~~RLW~~~~~~~~-~lL~d~~~tL~d~~l~~~q~IllE~ 275 (960)
++++ .++++...+.+-...|+++-..++.+.-++.++.+.++........ ...-+.+. |++.-.+.++.+|+
T Consensus 4 irvh-LPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~V~~~~~~~~~~~~~i~Wdt---D~~~L~~eEl~Ve~ 76 (77)
T 1c1y_B 4 IRVF-LPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVFRLLHEHKGKKARLDWNT---DAASLIGEELQVDF 76 (77)
T ss_dssp EEEE-ETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEEEEEGGGSSEEEEECTTS---BGGGGTTCEEEEEE
T ss_pred EEEE-CCCCceEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEEEeccCCCCCccccchhH---hhhhccCceEEEEe
Confidence 3443 3777788899999999999999999999999999999865311111 11222222 23334477888875
No 173
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=20.68 E-value=1.4e+02 Score=24.78 Aligned_cols=44 Identities=16% Similarity=0.219 Sum_probs=32.6
Q ss_pred ceEEEEEccCCCCCCcceeEEeCCCCchHHHHHHHHhhcccCCcccee
Q 002138 525 TMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLL 572 (960)
Q Consensus 525 ~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~ 572 (960)
.|.+++-..++. .+.+.++.+.++.+|++.+++..+++....-+
T Consensus 7 ~m~i~Vk~~~g~----~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL 50 (87)
T 1wh3_A 7 GIQVFVKNPDGG----SYAYAINPNSFILGLKQQIEDQQGLPKKQQQL 50 (87)
T ss_dssp SEEEEEEETTTE----EEEEEECSSSBHHHHHHHHHHHTCCCTTTEEE
T ss_pred CEEEEEEcCCCC----EEEEEeCCCChHHHHHHHHHHHhCCChHHEEE
Confidence 455666555543 35688889999999999999999987655433
No 174
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=20.44 E-value=3.5e+02 Score=28.10 Aligned_cols=46 Identities=9% Similarity=0.106 Sum_probs=35.8
Q ss_pred eeEEEEeeecCCCeEEEEEccCCcHHHHHHHHHHHcCCCCC-ceEEEEe
Q 002138 197 PLQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSE-MLYIWDF 244 (960)
Q Consensus 197 Pl~l~l~~~~~~~~~~~~~Sk~~Ti~eL~~~v~~lf~i~~e-~~RLW~~ 244 (960)
|+.++|... |+ ...+.+....|++++.+.+|..++|... -+-||..
T Consensus 1 ~i~~~V~l~-d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~ 47 (294)
T 1ef1_A 1 TISVRVTTM-DA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQ 47 (294)
T ss_dssp CEEEEEEET-TE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEE
T ss_pred CEEEEEEEC-Cc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEE
Confidence 566777665 33 5679999999999999999999999853 4666644
Done!