Query 002139
Match_columns 960
No_of_seqs 385 out of 2002
Neff 5.2
Searched_HMMs 46136
Date Thu Mar 28 17:23:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002139.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002139hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0245 Kinesin-like protein [ 100.0 9.8E-87 2.1E-91 779.4 32.9 356 22-382 3-383 (1221)
2 PF11995 DUF3490: Domain of un 100.0 1.2E-88 2.6E-93 661.7 13.3 161 782-942 1-161 (161)
3 KOG0242 Kinesin-like protein [ 100.0 3.4E-86 7.4E-91 785.6 31.0 398 21-431 4-411 (675)
4 KOG0243 Kinesin-like protein [ 100.0 6.2E-86 1.3E-90 786.6 31.6 360 18-382 44-426 (1041)
5 KOG4280 Kinesin-like protein [ 100.0 7.1E-86 1.5E-90 759.3 28.0 357 21-380 3-369 (574)
6 PLN03188 kinesin-12 family pro 100.0 7.7E-79 1.7E-83 731.2 32.9 347 22-381 97-474 (1320)
7 KOG0240 Kinesin (SMY1 subfamil 100.0 1.7E-78 3.7E-83 682.8 29.7 338 21-368 5-353 (607)
8 cd01370 KISc_KIP3_like Kinesin 100.0 4.8E-77 1E-81 662.5 30.8 321 24-346 1-338 (338)
9 cd01373 KISc_KLP2_like Kinesin 100.0 1.2E-76 2.6E-81 659.2 30.7 315 23-346 1-337 (337)
10 KOG0241 Kinesin-like protein [ 100.0 1.5E-76 3.3E-81 680.9 32.2 377 22-401 3-404 (1714)
11 cd01368 KISc_KIF23_like Kinesi 100.0 1.7E-75 3.7E-80 651.8 30.8 317 23-344 1-345 (345)
12 cd01365 KISc_KIF1A_KIF1B Kines 100.0 4.1E-74 8.9E-79 642.9 31.0 329 23-353 1-356 (356)
13 cd01371 KISc_KIF3 Kinesin moto 100.0 7.1E-73 1.5E-77 627.8 31.1 322 23-346 1-333 (333)
14 cd01364 KISc_BimC_Eg5 Kinesin 100.0 8.3E-73 1.8E-77 631.2 31.0 328 22-354 1-351 (352)
15 cd01367 KISc_KIF2_like Kinesin 100.0 7.4E-73 1.6E-77 625.2 29.3 311 23-344 1-322 (322)
16 cd01374 KISc_CENP_E Kinesin mo 100.0 2.8E-72 6E-77 619.8 31.4 314 24-346 1-321 (321)
17 cd01369 KISc_KHC_KIF5 Kinesin 100.0 1.1E-71 2.4E-76 615.7 30.5 314 23-346 2-325 (325)
18 cd01376 KISc_KID_like Kinesin 100.0 3.8E-71 8.2E-76 610.7 30.8 308 24-344 1-319 (319)
19 cd01372 KISc_KIF4 Kinesin moto 100.0 3.2E-71 7E-76 615.5 29.6 316 24-347 2-341 (341)
20 cd01375 KISc_KIF9_like Kinesin 100.0 3.1E-70 6.6E-75 607.1 30.0 312 24-344 1-334 (334)
21 cd01366 KISc_C_terminal Kinesi 100.0 9.3E-69 2E-73 593.1 31.4 314 23-348 2-328 (329)
22 smart00129 KISc Kinesin motor, 100.0 3E-68 6.6E-73 589.8 30.5 325 24-353 1-335 (335)
23 KOG0239 Kinesin (KAR3 subfamil 100.0 2E-68 4.4E-73 632.1 24.0 324 22-352 313-646 (670)
24 cd00106 KISc Kinesin motor dom 100.0 7.1E-67 1.5E-71 576.6 31.3 317 24-344 1-328 (328)
25 PF00225 Kinesin: Kinesin moto 100.0 2.8E-67 6.1E-72 581.3 20.5 316 30-346 1-335 (335)
26 KOG0246 Kinesin-like protein [ 100.0 5.7E-66 1.2E-70 579.4 24.0 326 16-351 201-546 (676)
27 KOG0247 Kinesin-like protein [ 100.0 2.5E-62 5.4E-67 562.9 31.7 327 21-353 29-443 (809)
28 KOG0244 Kinesin-like protein [ 100.0 7.3E-65 1.6E-69 598.4 10.6 336 31-380 1-350 (913)
29 COG5059 KIP1 Kinesin-like prot 100.0 1.3E-58 2.7E-63 544.5 26.2 317 21-354 20-344 (568)
30 cd01363 Motor_domain Myosin an 100.0 2.3E-46 5.1E-51 383.9 15.1 173 86-325 8-186 (186)
31 COG5059 KIP1 Kinesin-like prot 97.8 2E-07 4.4E-12 111.6 -11.7 253 18-289 300-566 (568)
32 COG0556 UvrB Helicase subunit 94.7 0.042 9.1E-07 65.1 5.5 83 70-157 4-100 (663)
33 PF00308 Bac_DnaA: Bacterial d 94.4 0.035 7.5E-07 59.3 3.6 76 69-155 3-78 (219)
34 PRK14086 dnaA chromosomal repl 92.0 0.15 3.3E-06 62.2 4.4 53 68-123 282-334 (617)
35 PRK06893 DNA replication initi 91.7 0.16 3.5E-06 54.4 3.8 50 68-123 10-59 (229)
36 PRK12377 putative replication 89.0 0.25 5.4E-06 54.1 2.5 52 71-124 71-122 (248)
37 PRK06620 hypothetical protein; 88.8 0.22 4.8E-06 53.2 1.8 49 69-121 11-62 (214)
38 COG2805 PilT Tfp pilus assembl 88.5 0.27 5.8E-06 55.3 2.3 33 90-122 112-144 (353)
39 TIGR00362 DnaA chromosomal rep 88.2 0.5 1.1E-05 54.8 4.4 53 67-122 103-155 (405)
40 PRK08116 hypothetical protein; 87.4 0.28 6.1E-06 54.1 1.6 51 70-122 81-133 (268)
41 PRK08084 DNA replication initi 86.9 0.57 1.2E-05 50.5 3.6 50 68-123 16-65 (235)
42 PRK09087 hypothetical protein; 86.8 0.46 1E-05 51.1 2.8 47 69-121 16-62 (226)
43 PRK14088 dnaA chromosomal repl 86.7 0.5 1.1E-05 55.8 3.3 51 68-122 99-149 (440)
44 PRK07952 DNA replication prote 86.4 0.46 9.9E-06 52.0 2.6 53 70-124 68-120 (244)
45 PRK06526 transposase; Provisio 86.2 0.31 6.7E-06 53.5 1.1 48 70-124 72-119 (254)
46 PRK05642 DNA replication initi 85.9 0.6 1.3E-05 50.4 3.1 48 69-123 14-65 (234)
47 PRK00149 dnaA chromosomal repl 85.7 0.57 1.2E-05 55.3 3.1 53 68-123 116-168 (450)
48 PRK06835 DNA replication prote 85.1 0.33 7.1E-06 55.3 0.6 39 85-125 167-205 (329)
49 PRK14087 dnaA chromosomal repl 85.0 0.81 1.8E-05 54.3 3.9 50 70-122 111-160 (450)
50 TIGR03420 DnaA_homol_Hda DnaA 83.9 0.95 2.1E-05 47.5 3.5 49 68-122 9-57 (226)
51 PRK10884 SH3 domain-containing 83.1 4.3 9.4E-05 43.6 8.0 73 357-429 90-164 (206)
52 COG2804 PulE Type II secretory 82.1 0.78 1.7E-05 54.7 2.2 33 90-122 245-277 (500)
53 PRK08903 DnaA regulatory inact 81.8 1.4 3E-05 46.7 3.8 49 69-122 13-61 (227)
54 PF04851 ResIII: Type III rest 81.7 0.96 2.1E-05 45.0 2.4 32 91-122 12-44 (184)
55 PRK08727 hypothetical protein; 81.2 0.84 1.8E-05 49.2 1.9 48 68-123 13-61 (233)
56 COG0593 DnaA ATPase involved i 81.0 1.4 3E-05 51.7 3.7 84 68-162 81-164 (408)
57 PRK08181 transposase; Validate 80.6 1.1 2.3E-05 49.9 2.4 23 100-124 105-127 (269)
58 cd00009 AAA The AAA+ (ATPases 80.6 1.3 2.8E-05 41.4 2.7 27 94-120 10-36 (151)
59 TIGR00631 uvrb excinuclease AB 80.5 1.4 3.1E-05 54.6 3.8 82 72-158 3-98 (655)
60 PRK00411 cdc6 cell division co 80.3 1.6 3.4E-05 50.0 3.8 37 83-120 35-72 (394)
61 PRK08939 primosomal protein Dn 80.3 0.84 1.8E-05 51.5 1.5 52 71-123 124-176 (306)
62 TIGR02928 orc1/cdc6 family rep 79.9 1.6 3.5E-05 49.4 3.6 21 100-120 37-57 (365)
63 COG1474 CDC6 Cdc6-related prot 79.8 2.9 6.2E-05 48.5 5.7 34 87-120 26-59 (366)
64 cd00046 DEXDc DEAD-like helica 75.6 1.2 2.6E-05 41.2 0.9 18 106-123 3-20 (144)
65 PRK06921 hypothetical protein; 74.5 2 4.2E-05 47.6 2.3 34 91-124 102-138 (266)
66 smart00053 DYNc Dynamin, GTPas 74.5 9.3 0.0002 41.9 7.4 54 187-258 85-138 (240)
67 PF00270 DEAD: DEAD/DEAH box h 73.1 2.2 4.7E-05 42.2 2.1 26 94-121 7-32 (169)
68 PRK12422 chromosomal replicati 73.1 2.8 6.2E-05 49.7 3.4 53 68-123 105-161 (445)
69 TIGR02533 type_II_gspE general 72.4 2.1 4.4E-05 51.5 2.0 29 94-122 233-261 (486)
70 PRK10436 hypothetical protein; 72.4 1.9 4.2E-05 51.4 1.7 29 94-122 209-237 (462)
71 TIGR02538 type_IV_pilB type IV 72.2 1.8 3.9E-05 52.8 1.4 29 94-122 307-335 (564)
72 COG1484 DnaC DNA replication p 72.0 2.2 4.8E-05 46.9 2.0 51 70-123 75-125 (254)
73 smart00382 AAA ATPases associa 71.8 1.7 3.6E-05 40.1 0.8 19 104-122 3-21 (148)
74 PF01935 DUF87: Domain of unkn 71.4 1.6 3.5E-05 46.2 0.8 21 106-126 26-46 (229)
75 PLN00020 ribulose bisphosphate 70.7 8.2 0.00018 45.2 6.2 52 69-120 110-165 (413)
76 PF13401 AAA_22: AAA domain; P 70.6 1.5 3.3E-05 41.6 0.3 18 103-120 4-21 (131)
77 PF04420 CHD5: CHD5-like prote 70.3 21 0.00046 36.8 8.5 65 359-427 39-103 (161)
78 PTZ00454 26S protease regulato 70.2 4.3 9.3E-05 47.6 3.9 51 70-120 141-196 (398)
79 KOG0989 Replication factor C, 70.1 3.5 7.6E-05 46.8 3.0 44 77-120 30-74 (346)
80 TIGR01420 pilT_fam pilus retra 69.9 2.5 5.5E-05 48.3 1.9 30 93-122 112-141 (343)
81 PF13245 AAA_19: Part of AAA d 69.7 2.5 5.5E-05 38.1 1.5 27 95-122 3-29 (76)
82 PF00437 T2SE: Type II/IV secr 69.1 2 4.3E-05 46.8 0.8 19 103-121 127-145 (270)
83 cd01131 PilT Pilus retraction 69.1 2 4.4E-05 45.0 0.9 19 104-122 2-20 (198)
84 TIGR02525 plasmid_TraJ plasmid 68.7 2.9 6.3E-05 48.6 2.1 28 94-122 141-168 (372)
85 PF01695 IstB_IS21: IstB-like 68.3 2.1 4.5E-05 44.5 0.8 21 104-124 48-68 (178)
86 TIGR02524 dot_icm_DotB Dot/Icm 68.3 2.9 6.3E-05 48.3 2.0 24 99-122 130-153 (358)
87 PF12846 AAA_10: AAA-like doma 68.2 2.1 4.5E-05 46.2 0.7 20 103-122 1-20 (304)
88 COG5008 PilU Tfp pilus assembl 67.6 4 8.6E-05 45.6 2.7 32 90-121 114-145 (375)
89 PF05673 DUF815: Protein of un 67.3 4.1 8.9E-05 44.9 2.8 128 70-222 23-154 (249)
90 cd01129 PulE-GspE PulE/GspE Th 66.0 3.4 7.4E-05 45.6 1.9 28 95-122 72-99 (264)
91 PRK03992 proteasome-activating 65.9 3.9 8.5E-05 47.6 2.4 51 70-120 127-182 (389)
92 TIGR03015 pepcterm_ATPase puta 65.8 4.3 9.4E-05 43.7 2.6 23 99-121 39-61 (269)
93 PRK09183 transposase/IS protei 64.8 2.7 5.9E-05 46.2 0.8 46 73-123 77-122 (259)
94 PTZ00112 origin recognition co 64.1 6.7 0.00015 50.3 4.0 23 100-122 778-800 (1164)
95 PF01637 Arch_ATPase: Archaeal 63.0 3.3 7.2E-05 42.7 1.0 29 92-120 9-37 (234)
96 PF13604 AAA_30: AAA domain; P 62.8 4 8.7E-05 42.9 1.6 28 94-121 9-36 (196)
97 PF00004 AAA: ATPase family as 62.1 3.2 6.9E-05 39.1 0.6 15 106-120 1-15 (132)
98 PF00448 SRP54: SRP54-type pro 61.6 3.3 7.1E-05 43.8 0.7 17 105-121 3-19 (196)
99 PRK13894 conjugal transfer ATP 60.9 5.5 0.00012 45.4 2.4 29 93-122 139-167 (319)
100 TIGR01242 26Sp45 26S proteasom 60.7 9.3 0.0002 43.8 4.2 52 70-121 118-174 (364)
101 PRK12402 replication factor C 60.6 6.5 0.00014 43.8 2.8 43 72-122 13-55 (337)
102 PF13479 AAA_24: AAA domain 60.3 4.3 9.4E-05 43.1 1.3 20 103-122 3-22 (213)
103 COG1222 RPT1 ATP-dependent 26S 59.5 5.8 0.00013 46.0 2.2 114 24-139 94-244 (406)
104 KOG0239 Kinesin (KAR3 subfamil 59.5 2.5 5.5E-05 52.6 -0.7 84 70-164 27-112 (670)
105 PHA02544 44 clamp loader, smal 59.3 6.4 0.00014 43.8 2.5 23 100-122 39-62 (316)
106 PF13207 AAA_17: AAA domain; P 58.8 4.3 9.2E-05 38.2 0.9 16 105-120 1-16 (121)
107 PF13086 AAA_11: AAA domain; P 58.4 5.6 0.00012 41.0 1.7 30 95-125 10-39 (236)
108 TIGR02782 TrbB_P P-type conjug 58.0 5.4 0.00012 45.0 1.6 29 93-122 123-151 (299)
109 PF13191 AAA_16: AAA ATPase do 57.7 3.9 8.5E-05 41.0 0.5 32 99-138 20-51 (185)
110 smart00487 DEXDc DEAD-like hel 57.2 7.2 0.00016 38.4 2.2 26 96-122 18-43 (201)
111 cd00124 MYSc Myosin motor doma 56.4 85 0.0018 39.5 11.8 36 84-120 67-103 (679)
112 PRK12723 flagellar biosynthesi 56.4 10 0.00023 44.4 3.7 20 103-122 174-193 (388)
113 PHA00729 NTP-binding motif con 56.0 9.5 0.0002 41.6 3.0 34 91-124 5-38 (226)
114 KOG0727 26S proteasome regulat 56.0 31 0.00068 38.5 6.9 124 16-139 90-248 (408)
115 PRK13900 type IV secretion sys 56.0 7 0.00015 44.8 2.1 30 92-122 150-179 (332)
116 PF06005 DUF904: Protein of un 55.7 82 0.0018 28.6 8.4 52 361-428 19-70 (72)
117 PTZ00361 26 proteosome regulat 55.4 17 0.00038 43.2 5.3 49 72-120 181-234 (438)
118 PF01580 FtsK_SpoIIIE: FtsK/Sp 55.2 2.9 6.3E-05 43.6 -1.0 19 105-123 40-58 (205)
119 KOG2543 Origin recognition com 55.1 9 0.0002 44.8 2.8 40 103-155 30-69 (438)
120 PF03999 MAP65_ASE1: Microtubu 54.7 8.7 0.00019 47.6 2.8 47 783-829 288-336 (619)
121 cd01382 MYSc_type_VI Myosin mo 54.4 1.3E+02 0.0027 38.4 12.8 35 85-120 73-108 (717)
122 cd01130 VirB11-like_ATPase Typ 54.4 8.1 0.00018 40.0 2.2 29 92-121 15-43 (186)
123 PRK13833 conjugal transfer pro 54.2 7.2 0.00016 44.6 1.8 29 93-122 135-163 (323)
124 PF14282 FlxA: FlxA-like prote 54.0 64 0.0014 31.1 8.0 58 359-421 18-75 (106)
125 PF05970 PIF1: PIF1-like helic 53.7 9.4 0.0002 44.0 2.7 36 81-120 4-39 (364)
126 COG1201 Lhr Lhr-like helicases 53.2 18 0.0004 46.1 5.3 54 95-153 31-85 (814)
127 COG4962 CpaF Flp pilus assembl 53.1 8.4 0.00018 44.4 2.1 28 92-120 163-190 (355)
128 PRK06547 hypothetical protein; 52.6 12 0.00025 38.9 2.9 30 91-120 3-32 (172)
129 cd00268 DEADc DEAD-box helicas 52.0 10 0.00022 39.0 2.4 22 96-119 31-52 (203)
130 PRK11448 hsdR type I restricti 52.0 6.7 0.00015 51.7 1.3 34 91-125 422-455 (1123)
131 PRK11637 AmiB activator; Provi 51.3 74 0.0016 37.6 9.7 25 399-423 98-122 (428)
132 PRK11776 ATP-dependent RNA hel 50.5 10 0.00022 44.8 2.4 23 95-119 35-57 (460)
133 PF00910 RNA_helicase: RNA hel 50.5 5.6 0.00012 37.6 0.2 26 106-135 1-26 (107)
134 PF13671 AAA_33: AAA domain; P 50.3 6.9 0.00015 37.8 0.8 15 106-120 2-16 (143)
135 PF07693 KAP_NTPase: KAP famil 50.3 25 0.00054 39.0 5.3 55 91-153 5-63 (325)
136 PTZ00424 helicase 45; Provisio 50.1 10 0.00022 43.5 2.2 26 93-120 57-82 (401)
137 PF06048 DUF927: Domain of unk 49.9 14 0.0003 41.2 3.2 32 88-120 179-210 (286)
138 PF07728 AAA_5: AAA domain (dy 49.7 6.4 0.00014 38.2 0.5 15 106-120 2-16 (139)
139 COG1223 Predicted ATPase (AAA+ 49.5 12 0.00027 41.8 2.6 17 104-120 152-168 (368)
140 TIGR02903 spore_lon_C ATP-depe 49.2 11 0.00023 46.8 2.4 43 71-121 151-193 (615)
141 PF07724 AAA_2: AAA domain (Cd 48.9 8.6 0.00019 39.8 1.3 17 104-120 4-20 (171)
142 PF12325 TMF_TATA_bd: TATA ele 48.6 51 0.0011 32.7 6.5 35 397-431 61-95 (120)
143 TIGR03499 FlhF flagellar biosy 48.5 7.8 0.00017 43.2 1.0 19 105-123 196-214 (282)
144 PF00580 UvrD-helicase: UvrD/R 48.0 7.3 0.00016 42.3 0.6 21 102-122 12-32 (315)
145 PF13238 AAA_18: AAA domain; P 47.9 7.9 0.00017 36.3 0.8 16 106-121 1-16 (129)
146 TIGR01241 FtsH_fam ATP-depende 47.5 15 0.00032 44.2 3.1 51 70-121 51-106 (495)
147 PF00063 Myosin_head: Myosin h 47.5 13 0.00027 46.6 2.7 35 85-120 67-102 (689)
148 PF03215 Rad17: Rad17 cell cyc 47.1 12 0.00027 45.4 2.4 30 91-120 31-62 (519)
149 PRK11192 ATP-dependent RNA hel 47.0 12 0.00026 43.7 2.3 25 94-120 31-55 (434)
150 KOG0739 AAA+-type ATPase [Post 46.8 16 0.00035 41.6 3.0 69 72-140 131-226 (439)
151 PRK13851 type IV secretion sys 46.4 8.2 0.00018 44.5 0.8 29 93-122 153-181 (344)
152 PF02562 PhoH: PhoH-like prote 45.8 14 0.00029 39.8 2.2 19 102-120 18-36 (205)
153 PRK13764 ATPase; Provisional 45.7 11 0.00023 46.7 1.6 20 103-122 257-276 (602)
154 PF10205 KLRAQ: Predicted coil 45.7 70 0.0015 31.0 6.6 65 363-429 8-72 (102)
155 COG2256 MGS1 ATPase related to 45.4 11 0.00023 44.4 1.5 43 72-119 22-64 (436)
156 PF02388 FemAB: FemAB family; 45.1 77 0.0017 37.3 8.5 56 265-325 185-240 (406)
157 KOG0735 AAA+-type ATPase [Post 44.6 14 0.0003 46.3 2.3 35 103-137 701-758 (952)
158 PRK04837 ATP-dependent RNA hel 44.5 14 0.00029 43.2 2.2 24 95-120 39-62 (423)
159 COG1419 FlhF Flagellar GTP-bin 44.4 17 0.00037 42.9 2.9 37 85-121 181-221 (407)
160 COG2433 Uncharacterized conser 44.4 84 0.0018 38.9 8.6 33 394-426 478-510 (652)
161 CHL00081 chlI Mg-protoporyphyr 44.4 9.5 0.00021 44.1 0.8 46 69-122 12-57 (350)
162 PF06309 Torsin: Torsin; Inte 43.8 12 0.00027 37.4 1.4 25 105-133 54-79 (127)
163 PF06414 Zeta_toxin: Zeta toxi 43.6 11 0.00024 39.4 1.2 21 101-121 13-33 (199)
164 COG3883 Uncharacterized protei 43.1 47 0.001 37.2 5.8 68 361-430 39-106 (265)
165 PRK10590 ATP-dependent RNA hel 43.0 16 0.00035 43.2 2.5 24 95-120 32-55 (456)
166 PRK00440 rfc replication facto 42.9 18 0.00039 39.9 2.8 22 100-121 35-56 (319)
167 PLN03025 replication factor C 42.8 19 0.0004 40.6 2.9 23 101-123 32-54 (319)
168 PRK14722 flhF flagellar biosyn 42.3 11 0.00024 44.0 1.0 21 103-123 137-157 (374)
169 TIGR00376 DNA helicase, putati 42.2 13 0.00027 46.4 1.5 20 105-124 175-194 (637)
170 TIGR02788 VirB11 P-type DNA tr 42.1 17 0.00038 40.9 2.5 30 91-121 133-162 (308)
171 TIGR02881 spore_V_K stage V sp 41.9 13 0.00027 40.7 1.3 20 103-122 42-61 (261)
172 cd01127 TrwB Bacterial conjuga 41.6 8.1 0.00018 45.2 -0.2 21 103-123 42-62 (410)
173 PRK11331 5-methylcytosine-spec 41.4 17 0.00038 43.4 2.4 27 92-120 185-211 (459)
174 PRK13342 recombination factor 41.2 15 0.00033 42.9 2.0 45 72-121 10-54 (413)
175 TIGR00635 ruvB Holliday juncti 41.2 17 0.00036 40.3 2.2 39 82-121 8-48 (305)
176 COG5019 CDC3 Septin family pro 40.5 36 0.00078 39.7 4.6 21 100-120 20-40 (373)
177 PF05496 RuvB_N: Holliday junc 39.7 36 0.00078 37.4 4.3 43 72-119 22-66 (233)
178 KOG0651 26S proteasome regulat 39.7 29 0.00064 39.8 3.7 73 68-140 126-226 (388)
179 PRK04195 replication factor C 39.6 24 0.00051 42.3 3.2 30 91-120 26-56 (482)
180 TIGR00348 hsdR type I site-spe 39.6 23 0.0005 44.3 3.2 34 90-124 246-284 (667)
181 TIGR00618 sbcc exonuclease Sbc 39.4 18 0.00039 47.5 2.3 24 104-127 27-57 (1042)
182 KOG0953 Mitochondrial RNA heli 39.4 20 0.00043 43.8 2.4 33 105-137 193-237 (700)
183 TIGR00614 recQ_fam ATP-depende 39.2 20 0.00044 42.6 2.6 24 94-119 19-42 (470)
184 KOG1962 B-cell receptor-associ 39.2 1.2E+02 0.0026 33.2 8.0 61 363-429 130-190 (216)
185 PF09726 Macoilin: Transmembra 38.8 64 0.0014 40.8 6.8 73 359-431 417-501 (697)
186 PRK10416 signal recognition pa 38.8 26 0.00057 39.9 3.3 19 103-121 114-132 (318)
187 TIGR01243 CDC48 AAA family ATP 38.6 53 0.0011 41.6 6.2 52 70-121 174-230 (733)
188 smart00242 MYSc Myosin. Large 38.4 26 0.00057 43.9 3.5 36 84-120 73-109 (677)
189 PF05729 NACHT: NACHT domain 38.3 15 0.00033 35.8 1.1 18 105-122 2-19 (166)
190 KOG0340 ATP-dependent RNA heli 38.0 31 0.00066 40.2 3.5 47 93-148 36-82 (442)
191 KOG3990 Uncharacterized conser 37.9 70 0.0015 35.5 6.0 62 360-430 225-293 (305)
192 cd01126 TraG_VirD4 The TraG/Tr 37.6 16 0.00034 42.2 1.3 21 106-128 2-22 (384)
193 cd01120 RecA-like_NTPases RecA 37.5 14 0.0003 35.7 0.7 18 106-123 2-19 (165)
194 COG1219 ClpX ATP-dependent pro 37.5 15 0.00033 42.2 1.1 17 104-120 98-114 (408)
195 PF12775 AAA_7: P-loop contain 37.1 20 0.00043 39.9 1.9 26 94-120 25-50 (272)
196 PF08317 Spc7: Spc7 kinetochor 37.1 1.6E+02 0.0034 33.8 9.1 40 391-430 231-270 (325)
197 PF00735 Septin: Septin; Inte 37.1 12 0.00026 41.9 0.2 20 100-119 1-20 (281)
198 PF10236 DAP3: Mitochondrial r 37.0 24 0.00052 40.0 2.6 26 97-122 17-42 (309)
199 PRK14974 cell division protein 37.0 39 0.00086 38.9 4.3 20 103-122 140-159 (336)
200 smart00763 AAA_PrkA PrkA AAA d 36.9 36 0.00079 39.7 4.0 46 70-120 45-95 (361)
201 PRK10536 hypothetical protein; 36.1 22 0.00048 39.7 2.1 41 70-120 51-91 (262)
202 PRK00080 ruvB Holliday junctio 36.1 19 0.00041 40.7 1.6 18 104-121 52-69 (328)
203 COG3074 Uncharacterized protei 35.9 2.8E+02 0.0061 25.3 8.3 58 361-427 19-76 (79)
204 TIGR02902 spore_lonB ATP-depen 35.9 24 0.00051 43.0 2.4 41 71-119 62-102 (531)
205 PF07795 DUF1635: Protein of u 35.8 88 0.0019 34.0 6.4 36 389-424 25-60 (214)
206 PRK00771 signal recognition pa 35.8 40 0.00087 40.2 4.3 20 103-122 95-114 (437)
207 PRK11634 ATP-dependent RNA hel 35.6 22 0.00048 44.2 2.1 25 94-120 36-60 (629)
208 PRK10865 protein disaggregatio 35.6 35 0.00077 44.0 4.0 45 71-120 565-615 (857)
209 PRK11637 AmiB activator; Provi 35.2 93 0.002 36.7 7.2 34 396-429 88-121 (428)
210 TIGR02640 gas_vesic_GvpN gas v 35.0 33 0.0007 37.7 3.2 28 91-120 11-38 (262)
211 cd01384 MYSc_type_XI Myosin mo 34.8 34 0.00074 43.0 3.6 35 85-120 70-105 (674)
212 TIGR01618 phage_P_loop phage n 34.7 17 0.00036 39.5 0.8 21 103-123 12-32 (220)
213 PF13476 AAA_23: AAA domain; P 34.7 18 0.00039 36.5 1.0 17 104-120 20-36 (202)
214 PHA02244 ATPase-like protein 34.5 36 0.00079 39.9 3.5 51 66-121 87-137 (383)
215 PRK04406 hypothetical protein; 34.2 3.7E+02 0.008 24.6 9.4 51 362-428 6-56 (75)
216 PF02456 Adeno_IVa2: Adenoviru 34.2 16 0.00035 41.8 0.6 17 105-121 89-105 (369)
217 PF15619 Lebercilin: Ciliary p 34.1 1.2E+02 0.0027 32.3 7.2 69 358-428 59-135 (194)
218 TIGR02237 recomb_radB DNA repa 34.1 24 0.00052 36.7 1.9 25 96-120 2-29 (209)
219 KOG4196 bZIP transcription fac 33.8 2.1E+02 0.0045 29.0 8.0 62 366-427 46-118 (135)
220 cd01383 MYSc_type_VIII Myosin 33.7 39 0.00085 42.5 3.9 35 85-120 74-109 (677)
221 PF13555 AAA_29: P-loop contai 33.6 19 0.00041 31.7 0.8 15 106-120 26-40 (62)
222 PF08657 DASH_Spc34: DASH comp 33.6 1.3E+02 0.0028 33.7 7.4 83 319-416 168-258 (259)
223 PLN00206 DEAD-box ATP-dependen 33.5 33 0.00071 41.5 3.1 26 93-120 150-175 (518)
224 COG4096 HsdR Type I site-speci 33.5 27 0.00059 44.4 2.4 40 86-126 168-208 (875)
225 cd02021 GntK Gluconate kinase 33.5 18 0.00039 35.6 0.8 15 106-120 2-16 (150)
226 PF13173 AAA_14: AAA domain 33.4 19 0.00041 34.9 0.9 16 105-120 4-19 (128)
227 cd01850 CDC_Septin CDC/Septin. 33.3 21 0.00045 39.7 1.4 21 100-120 1-21 (276)
228 PF10412 TrwB_AAD_bind: Type I 33.3 11 0.00023 43.9 -0.9 18 105-122 17-34 (386)
229 cd01385 MYSc_type_IX Myosin mo 33.1 38 0.00082 42.7 3.7 37 84-121 75-112 (692)
230 PRK09270 nucleoside triphospha 33.0 44 0.00095 35.8 3.7 37 84-120 13-50 (229)
231 KOG0335 ATP-dependent RNA heli 32.9 15 0.00033 44.0 0.2 22 98-121 108-129 (482)
232 PRK05703 flhF flagellar biosyn 32.9 19 0.00041 42.7 1.0 19 105-123 223-241 (424)
233 PRK00131 aroK shikimate kinase 32.8 21 0.00047 35.4 1.2 17 104-120 5-21 (175)
234 PF01486 K-box: K-box region; 32.7 2.9E+02 0.0063 26.0 8.7 68 360-428 19-99 (100)
235 CHL00195 ycf46 Ycf46; Provisio 32.7 28 0.00062 42.1 2.4 17 104-120 260-276 (489)
236 PRK06696 uridine kinase; Valid 32.7 42 0.00091 35.8 3.5 30 91-120 7-39 (223)
237 cd01378 MYSc_type_I Myosin mot 32.7 39 0.00084 42.5 3.6 35 85-120 68-103 (674)
238 PRK04537 ATP-dependent RNA hel 32.5 28 0.0006 42.8 2.3 24 95-120 40-63 (572)
239 PRK01297 ATP-dependent RNA hel 32.4 26 0.00057 41.6 2.0 26 93-120 116-141 (475)
240 cd01381 MYSc_type_VII Myosin m 32.4 42 0.0009 42.2 3.8 37 84-121 67-104 (671)
241 TIGR01359 UMP_CMP_kin_fam UMP- 32.3 21 0.00045 36.3 1.0 15 106-120 2-16 (183)
242 KOG1803 DNA helicase [Replicat 32.2 17 0.00036 44.7 0.4 21 105-125 203-223 (649)
243 cd01387 MYSc_type_XV Myosin mo 32.2 40 0.00088 42.4 3.7 37 84-121 68-105 (677)
244 PRK14962 DNA polymerase III su 32.2 33 0.00071 41.3 2.8 41 72-120 12-53 (472)
245 PF07106 TBPIP: Tat binding pr 31.9 2.6E+02 0.0056 28.7 9.0 13 279-291 33-45 (169)
246 TIGR01817 nifA Nif-specific re 31.9 27 0.00058 42.3 2.0 45 70-120 192-236 (534)
247 PRK04328 hypothetical protein; 31.8 33 0.00072 37.4 2.6 28 92-119 9-39 (249)
248 PRK15422 septal ring assembly 31.7 3.5E+02 0.0075 25.3 8.5 58 362-428 20-77 (79)
249 cd01123 Rad51_DMC1_radA Rad51_ 31.5 32 0.0007 36.4 2.4 29 92-120 5-36 (235)
250 KOG0730 AAA+-type ATPase [Post 31.5 31 0.00067 42.9 2.4 36 104-139 469-527 (693)
251 cd01377 MYSc_type_II Myosin mo 31.4 42 0.00091 42.4 3.6 36 84-120 72-108 (693)
252 KOG4348 Adaptor protein CMS/SE 31.4 2E+02 0.0043 34.4 8.6 68 349-428 558-625 (627)
253 PRK06995 flhF flagellar biosyn 31.4 21 0.00045 43.2 0.9 19 104-122 257-275 (484)
254 TIGR02030 BchI-ChlI magnesium 31.4 27 0.00059 40.2 1.9 43 71-121 1-43 (337)
255 PRK06067 flagellar accessory p 31.3 35 0.00075 36.5 2.5 30 91-120 10-42 (234)
256 PRK07261 topology modulation p 31.2 22 0.00048 36.5 1.0 15 106-120 3-17 (171)
257 KOG0729 26S proteasome regulat 31.0 30 0.00066 38.9 2.0 20 101-120 207-228 (435)
258 PRK14961 DNA polymerase III su 31.0 39 0.00083 39.0 3.0 41 72-120 14-55 (363)
259 TIGR01243 CDC48 AAA family ATP 30.9 33 0.00072 43.3 2.7 17 104-120 488-504 (733)
260 COG0419 SbcC ATPase involved i 30.7 38 0.00082 43.9 3.2 22 105-126 27-55 (908)
261 TIGR03158 cas3_cyano CRISPR-as 30.7 33 0.00071 39.5 2.4 26 95-120 6-31 (357)
262 TIGR01360 aden_kin_iso1 adenyl 30.6 30 0.00065 35.0 1.9 29 105-133 5-39 (188)
263 COG1125 OpuBA ABC-type proline 30.6 22 0.00047 39.9 0.8 13 108-120 32-44 (309)
264 PRK13341 recombination factor 30.6 33 0.00071 43.5 2.5 46 72-122 26-71 (725)
265 PHA02653 RNA helicase NPH-II; 30.6 38 0.00082 42.6 3.0 25 93-119 171-195 (675)
266 KOG0926 DEAH-box RNA helicase 30.2 28 0.00061 44.2 1.8 19 102-120 270-288 (1172)
267 PF14257 DUF4349: Domain of un 30.1 2.6E+02 0.0057 30.7 9.2 95 315-428 94-193 (262)
268 PHA02624 large T antigen; Prov 30.1 40 0.00086 41.9 3.0 30 93-122 419-450 (647)
269 KOG0354 DEAD-box like helicase 29.7 39 0.00085 42.7 2.9 27 91-120 67-93 (746)
270 TIGR03819 heli_sec_ATPase heli 29.6 34 0.00074 39.4 2.3 30 91-121 167-196 (340)
271 PF12774 AAA_6: Hydrolytic ATP 29.6 61 0.0013 35.4 4.1 32 107-138 36-84 (231)
272 cd01380 MYSc_type_V Myosin mot 29.6 47 0.001 41.9 3.6 35 85-120 68-103 (691)
273 KOG3859 Septins (P-loop GTPase 29.6 34 0.00075 38.6 2.2 24 97-120 36-59 (406)
274 CHL00176 ftsH cell division pr 29.4 24 0.00051 44.1 1.0 18 104-121 217-234 (638)
275 cd01428 ADK Adenylate kinase ( 29.4 25 0.00054 35.9 1.0 15 106-120 2-16 (194)
276 PLN02199 shikimate kinase 29.4 68 0.0015 36.6 4.5 31 87-120 89-119 (303)
277 PRK10917 ATP-dependent DNA hel 29.3 40 0.00087 42.3 3.0 24 97-120 276-299 (681)
278 KOG0726 26S proteasome regulat 29.2 52 0.0011 37.6 3.5 35 105-139 221-278 (440)
279 PRK00295 hypothetical protein; 29.0 4E+02 0.0087 23.8 8.4 30 394-423 23-52 (68)
280 TIGR03752 conj_TIGR03752 integ 29.0 2.5E+02 0.0054 34.0 9.2 29 399-427 111-139 (472)
281 TIGR01389 recQ ATP-dependent D 29.0 37 0.00079 41.7 2.5 26 93-120 20-45 (591)
282 smart00489 DEXDc3 DEAD-like he 29.0 53 0.0012 36.8 3.6 28 91-120 17-44 (289)
283 smart00488 DEXDc2 DEAD-like he 29.0 53 0.0012 36.8 3.6 28 91-120 17-44 (289)
284 COG1198 PriA Primosomal protei 28.9 27 0.00059 44.2 1.4 17 101-117 215-231 (730)
285 PRK08118 topology modulation p 28.7 26 0.00056 35.9 1.0 14 106-119 4-17 (167)
286 PF02534 T4SS-DNA_transf: Type 28.7 36 0.00078 40.2 2.3 22 104-127 45-66 (469)
287 COG3829 RocR Transcriptional r 28.5 37 0.00081 41.4 2.4 43 68-116 239-281 (560)
288 PRK10820 DNA-binding transcrip 28.5 30 0.00064 42.0 1.6 46 69-120 199-244 (520)
289 PF02367 UPF0079: Uncharacteri 28.5 26 0.00056 34.8 0.9 33 90-124 4-36 (123)
290 TIGR01313 therm_gnt_kin carboh 28.4 22 0.00047 35.5 0.4 14 106-119 1-14 (163)
291 COG0606 Predicted ATPase with 28.4 43 0.00093 40.4 2.8 35 91-126 187-224 (490)
292 PRK15483 type III restriction- 28.3 54 0.0012 42.8 3.9 12 111-122 67-78 (986)
293 cd00464 SK Shikimate kinase (S 28.3 25 0.00055 34.3 0.8 16 105-120 1-16 (154)
294 PRK11889 flhF flagellar biosyn 28.0 52 0.0011 39.2 3.4 19 104-122 242-260 (436)
295 PRK11057 ATP-dependent DNA hel 28.0 37 0.00081 41.9 2.4 24 94-119 33-56 (607)
296 COG1126 GlnQ ABC-type polar am 27.9 27 0.00058 38.3 1.0 23 98-120 17-45 (240)
297 PRK05580 primosome assembly pr 27.6 29 0.00064 43.5 1.4 17 104-120 163-179 (679)
298 TIGR02880 cbbX_cfxQ probable R 27.5 25 0.00055 39.2 0.7 16 105-120 60-75 (284)
299 CHL00181 cbbX CbbX; Provisiona 27.5 27 0.00058 39.2 0.9 16 106-121 62-77 (287)
300 PF08826 DMPK_coil: DMPK coile 27.5 3.3E+02 0.0072 24.1 7.4 30 389-418 31-60 (61)
301 PRK11388 DNA-binding transcrip 27.5 67 0.0015 39.8 4.4 45 70-120 321-365 (638)
302 TIGR02322 phosphon_PhnN phosph 27.4 27 0.00058 35.5 0.9 17 105-121 3-19 (179)
303 TIGR02746 TraC-F-type type-IV 27.4 24 0.00052 44.6 0.6 21 103-123 430-450 (797)
304 PRK09361 radB DNA repair and r 27.2 51 0.0011 34.9 2.9 31 91-121 8-41 (225)
305 PRK02119 hypothetical protein; 27.1 4.8E+02 0.01 23.7 9.3 15 362-376 4-18 (73)
306 COG0630 VirB11 Type IV secreto 27.0 25 0.00054 40.0 0.6 20 103-122 143-162 (312)
307 PF00931 NB-ARC: NB-ARC domain 26.8 59 0.0013 35.2 3.4 30 91-120 5-36 (287)
308 cd02020 CMPK Cytidine monophos 26.7 30 0.00065 33.4 1.0 15 106-120 2-16 (147)
309 PRK13767 ATP-dependent helicas 26.7 39 0.00084 43.7 2.3 23 96-120 42-64 (876)
310 TIGR02173 cyt_kin_arch cytidyl 26.7 42 0.00091 33.4 2.1 16 105-120 2-17 (171)
311 KOG2391 Vacuolar sorting prote 26.6 2.3E+02 0.005 33.0 7.9 62 361-424 219-280 (365)
312 COG0464 SpoVK ATPases of the A 26.6 57 0.0012 39.0 3.5 20 101-120 274-293 (494)
313 TIGR03744 traC_PFL_4706 conjug 26.4 20 0.00044 46.3 -0.3 23 102-124 474-496 (893)
314 PF15186 TEX13: Testis-express 26.3 74 0.0016 32.7 3.7 43 825-872 84-126 (152)
315 PRK08233 hypothetical protein; 26.3 30 0.00064 34.8 0.9 16 105-120 5-20 (182)
316 PRK15429 formate hydrogenlyase 26.3 36 0.00079 42.6 1.9 44 71-120 373-416 (686)
317 KOG1514 Origin recognition com 26.2 54 0.0012 41.2 3.2 30 94-123 411-442 (767)
318 PF04977 DivIC: Septum formati 26.1 1.5E+02 0.0032 26.1 5.3 28 396-423 23-50 (80)
319 PRK04296 thymidine kinase; Pro 26.1 21 0.00046 37.2 -0.1 21 105-125 4-24 (190)
320 cd01379 MYSc_type_III Myosin m 25.9 57 0.0012 41.0 3.4 36 85-121 68-104 (653)
321 TIGR03238 dnd_assoc_3 dnd syst 25.9 40 0.00087 40.8 2.0 27 95-121 18-50 (504)
322 cd01394 radB RadB. The archaea 25.9 54 0.0012 34.4 2.8 29 93-121 6-37 (218)
323 PRK10867 signal recognition pa 25.8 71 0.0015 38.2 4.1 20 103-122 100-119 (433)
324 cd01983 Fer4_NifH The Fer4_Nif 25.7 32 0.00068 30.0 0.9 17 106-122 2-18 (99)
325 PF04102 SlyX: SlyX; InterPro 25.7 3.3E+02 0.0072 24.2 7.3 31 399-429 20-50 (69)
326 TIGR00064 ftsY signal recognit 25.7 35 0.00076 38.0 1.4 19 104-122 73-91 (272)
327 cd00820 PEPCK_HprK Phosphoenol 25.6 33 0.00071 33.3 1.0 17 104-120 16-32 (107)
328 TIGR02397 dnaX_nterm DNA polym 25.6 58 0.0013 36.7 3.2 23 98-120 30-53 (355)
329 PRK14723 flhF flagellar biosyn 25.5 33 0.00071 43.7 1.3 19 104-122 186-204 (767)
330 cd02023 UMPK Uridine monophosp 25.4 28 0.00062 36.0 0.6 15 106-120 2-16 (198)
331 PRK14721 flhF flagellar biosyn 25.3 31 0.00068 41.0 1.0 20 103-122 191-210 (420)
332 PRK14531 adenylate kinase; Pro 25.3 33 0.00071 35.4 1.0 16 105-120 4-19 (183)
333 PRK12726 flagellar biosynthesi 25.3 31 0.00068 40.7 1.0 20 104-123 207-226 (407)
334 PRK12724 flagellar biosynthesi 25.2 63 0.0014 38.6 3.4 19 104-122 224-242 (432)
335 PRK06217 hypothetical protein; 25.2 32 0.00069 35.4 0.9 15 106-120 4-18 (183)
336 COG3598 RepA RecA-family ATPas 25.1 39 0.00085 39.0 1.7 77 75-156 62-141 (402)
337 PRK06305 DNA polymerase III su 25.1 45 0.00097 39.9 2.3 42 72-121 15-57 (451)
338 PF00485 PRK: Phosphoribulokin 25.1 29 0.00064 36.0 0.6 15 106-120 2-16 (194)
339 PRK11034 clpA ATP-dependent Cl 25.0 63 0.0014 41.3 3.6 18 103-120 488-505 (758)
340 PF08317 Spc7: Spc7 kinetochor 25.0 3E+02 0.0066 31.4 8.8 61 362-422 186-248 (325)
341 TIGR01650 PD_CobS cobaltochela 25.0 35 0.00076 39.3 1.3 40 79-120 41-81 (327)
342 PRK11664 ATP-dependent RNA hel 24.9 52 0.0011 42.3 2.9 28 91-120 10-37 (812)
343 KOG0250 DNA repair protein RAD 24.9 2.5E+02 0.0053 37.2 8.6 15 107-121 66-80 (1074)
344 COG4942 Membrane-bound metallo 24.8 1.6E+02 0.0035 35.1 6.5 65 362-428 40-104 (420)
345 cd01393 recA_like RecA is a b 24.8 53 0.0011 34.5 2.5 30 92-121 5-37 (226)
346 PF04548 AIG1: AIG1 family; I 24.8 34 0.00073 36.3 1.1 16 105-120 2-17 (212)
347 TIGR03817 DECH_helic helicase/ 24.8 45 0.00097 42.4 2.3 25 94-120 44-68 (742)
348 PRK01172 ski2-like helicase; P 24.7 49 0.0011 41.3 2.5 21 97-119 33-53 (674)
349 cd01124 KaiC KaiC is a circadi 24.5 33 0.00073 34.6 0.9 15 106-120 2-16 (187)
350 cd01386 MYSc_type_XVIII Myosin 24.5 61 0.0013 41.5 3.4 35 85-120 68-103 (767)
351 TIGR00602 rad24 checkpoint pro 24.5 43 0.00094 41.8 2.0 17 105-121 112-128 (637)
352 PTZ00110 helicase; Provisional 24.5 47 0.001 40.5 2.3 24 95-120 161-184 (545)
353 TIGR00231 small_GTP small GTP- 24.4 31 0.00067 32.3 0.6 16 105-120 3-18 (161)
354 PRK14964 DNA polymerase III su 24.3 42 0.00091 40.7 1.9 41 72-120 11-52 (491)
355 PF08477 Miro: Miro-like prote 24.3 31 0.00068 32.0 0.6 15 106-120 2-16 (119)
356 TIGR03263 guanyl_kin guanylate 24.2 34 0.00073 34.7 0.9 16 105-120 3-18 (180)
357 PRK04325 hypothetical protein; 24.2 3.3E+02 0.0071 24.8 7.0 14 363-376 5-18 (74)
358 TIGR03689 pup_AAA proteasome A 24.1 32 0.0007 41.9 0.8 16 105-120 218-233 (512)
359 KOG2228 Origin recognition com 24.1 98 0.0021 36.2 4.5 40 77-120 27-66 (408)
360 PF10458 Val_tRNA-synt_C: Valy 24.0 1.4E+02 0.003 26.2 4.6 17 360-376 4-20 (66)
361 PRK00300 gmk guanylate kinase; 24.0 35 0.00075 35.4 0.9 18 103-120 5-22 (205)
362 PF04859 DUF641: Plant protein 23.9 1.6E+02 0.0035 29.7 5.6 63 824-886 53-117 (131)
363 TIGR00643 recG ATP-dependent D 23.9 55 0.0012 40.7 2.8 20 101-120 254-273 (630)
364 COG1122 CbiO ABC-type cobalt t 23.7 37 0.00081 37.1 1.2 22 105-126 32-56 (235)
365 PRK14970 DNA polymerase III su 23.7 60 0.0013 37.2 2.9 42 72-121 15-57 (367)
366 PRK10803 tol-pal system protei 23.6 2.4E+02 0.0052 31.4 7.4 60 366-427 39-98 (263)
367 PF08614 ATG16: Autophagy prot 23.5 5.9E+02 0.013 26.9 10.0 57 359-424 115-171 (194)
368 TIGR01351 adk adenylate kinase 23.5 46 0.001 35.0 1.8 29 106-134 2-36 (210)
369 PHA01747 putative ATP-dependen 23.4 40 0.00086 39.7 1.3 35 86-120 173-207 (425)
370 PF03668 ATP_bind_2: P-loop AT 23.4 82 0.0018 35.7 3.7 32 105-136 3-45 (284)
371 PRK15424 propionate catabolism 23.4 46 0.001 40.8 2.0 45 70-120 215-259 (538)
372 PRK14532 adenylate kinase; Pro 23.4 38 0.00082 34.7 1.1 16 105-120 2-17 (188)
373 PF12329 TMF_DNA_bd: TATA elem 23.3 4.2E+02 0.009 24.1 7.6 36 392-427 35-70 (74)
374 KOG0993 Rab5 GTPase effector R 23.3 3.2E+02 0.0069 32.6 8.3 68 362-429 116-187 (542)
375 PF05529 Bap31: B-cell recepto 23.3 2.5E+02 0.0055 29.4 7.2 31 395-425 159-189 (192)
376 KOG1532 GTPase XAB1, interacts 23.3 94 0.002 35.4 4.1 38 102-147 18-55 (366)
377 TIGR02894 DNA_bind_RsfA transc 23.2 6E+02 0.013 26.7 9.5 31 397-427 118-148 (161)
378 PRK11131 ATP-dependent RNA hel 23.0 56 0.0012 44.0 2.7 23 97-120 84-106 (1294)
379 TIGR03881 KaiC_arch_4 KaiC dom 22.9 63 0.0014 34.2 2.7 29 93-121 7-38 (229)
380 smart00787 Spc7 Spc7 kinetocho 22.9 4.1E+02 0.0089 30.5 9.2 38 392-429 227-264 (312)
381 TIGR02688 conserved hypothetic 22.9 27 0.00058 41.7 -0.2 27 98-126 206-232 (449)
382 PF12240 Angiomotin_C: Angiomo 22.8 1E+03 0.022 26.0 11.5 74 330-413 8-87 (205)
383 KOG0995 Centromere-associated 22.7 3.3E+02 0.0072 33.7 8.7 55 362-422 310-364 (581)
384 PF06156 DUF972: Protein of un 22.7 4.8E+02 0.01 25.5 8.3 33 393-425 25-57 (107)
385 TIGR02639 ClpA ATP-dependent C 22.5 73 0.0016 40.4 3.5 17 104-120 485-501 (731)
386 COG2433 Uncharacterized conser 22.5 2.9E+02 0.0063 34.5 8.2 41 394-434 471-511 (652)
387 TIGR02894 DNA_bind_RsfA transc 22.4 4.1E+02 0.0088 27.9 8.1 12 278-289 30-41 (161)
388 PLN03137 ATP-dependent DNA hel 22.4 54 0.0012 43.5 2.4 27 92-120 466-492 (1195)
389 PF04111 APG6: Autophagy prote 22.4 1.7E+02 0.0037 33.5 6.1 9 734-742 245-253 (314)
390 cd02025 PanK Pantothenate kina 22.3 27 0.00058 37.5 -0.3 12 109-120 5-16 (220)
391 PRK06851 hypothetical protein; 22.2 52 0.0011 38.5 2.0 31 90-120 17-47 (367)
392 PF10146 zf-C4H2: Zinc finger- 22.2 4.1E+02 0.0089 29.3 8.7 52 360-420 32-83 (230)
393 KOG0330 ATP-dependent RNA heli 22.1 53 0.0011 38.8 2.0 26 93-120 90-115 (476)
394 COG1136 SalX ABC-type antimicr 22.0 36 0.00078 37.2 0.6 23 98-120 20-48 (226)
395 TIGR02329 propionate_PrpR prop 22.0 48 0.001 40.5 1.7 46 69-120 207-252 (526)
396 KOG0994 Extracellular matrix g 21.8 4.8E+02 0.01 35.1 10.0 47 333-382 1177-1223(1758)
397 TIGR00929 VirB4_CagE type IV s 21.6 38 0.00082 42.7 0.8 20 103-122 434-453 (785)
398 PRK10884 SH3 domain-containing 21.5 2.4E+02 0.0051 30.6 6.6 34 393-426 135-168 (206)
399 PRK10078 ribose 1,5-bisphospho 21.4 41 0.00088 34.7 0.8 16 105-120 4-19 (186)
400 PRK06762 hypothetical protein; 21.3 46 0.00099 33.3 1.2 15 105-119 4-18 (166)
401 PRK09111 DNA polymerase III su 21.3 52 0.0011 40.9 1.8 27 94-120 36-63 (598)
402 PRK05298 excinuclease ABC subu 21.2 85 0.0018 39.3 3.7 84 70-158 4-101 (652)
403 PRK04040 adenylate kinase; Pro 21.1 43 0.00093 35.1 0.9 16 105-120 4-19 (188)
404 TIGR02639 ClpA ATP-dependent C 21.1 44 0.00096 42.3 1.2 35 93-127 193-227 (731)
405 TIGR03185 DNA_S_dndD DNA sulfu 21.1 3.3E+02 0.0071 34.1 8.7 16 105-120 30-45 (650)
406 TIGR01425 SRP54_euk signal rec 21.0 1.1E+02 0.0023 36.7 4.2 20 103-122 100-119 (429)
407 PF14532 Sigma54_activ_2: Sigm 21.0 41 0.0009 32.9 0.8 21 100-120 18-38 (138)
408 COG3842 PotA ABC-type spermidi 21.0 40 0.00086 39.2 0.7 13 108-120 36-48 (352)
409 cd03274 ABC_SMC4_euk Eukaryoti 20.8 44 0.00096 35.6 1.0 16 106-121 28-43 (212)
410 PRK02496 adk adenylate kinase; 20.8 56 0.0012 33.4 1.7 29 106-134 4-38 (184)
411 PRK05342 clpX ATP-dependent pr 20.8 45 0.00097 39.5 1.1 18 103-120 108-125 (412)
412 KOG0336 ATP-dependent RNA heli 20.8 53 0.0011 38.9 1.6 52 68-124 216-280 (629)
413 PRK14729 miaA tRNA delta(2)-is 20.8 49 0.0011 37.7 1.4 42 105-162 6-47 (300)
414 PRK14530 adenylate kinase; Pro 20.8 44 0.00095 35.3 0.9 16 105-120 5-20 (215)
415 PRK03839 putative kinase; Prov 20.7 44 0.00095 34.1 0.9 14 106-119 3-16 (180)
416 PF10923 DUF2791: P-loop Domai 20.7 82 0.0018 37.5 3.2 30 91-120 37-66 (416)
417 PRK10246 exonuclease subunit S 20.7 64 0.0014 42.6 2.6 23 104-126 31-60 (1047)
418 TIGR00763 lon ATP-dependent pr 20.6 49 0.0011 42.2 1.5 16 105-120 349-364 (775)
419 TIGR03345 VI_ClpV1 type VI sec 20.6 93 0.002 40.3 3.9 18 104-121 597-614 (852)
420 PRK05416 glmZ(sRNA)-inactivati 20.6 1E+02 0.0022 34.9 3.8 17 105-121 8-24 (288)
421 TIGR03877 thermo_KaiC_1 KaiC d 20.5 78 0.0017 34.1 2.8 27 93-119 8-37 (237)
422 TIGR00382 clpX endopeptidase C 20.5 44 0.00095 39.6 1.0 17 104-120 117-133 (413)
423 COG3839 MalK ABC-type sugar tr 20.4 42 0.0009 38.9 0.7 15 106-120 32-46 (338)
424 PRK14527 adenylate kinase; Pro 20.4 50 0.0011 34.2 1.3 30 104-133 7-42 (191)
425 cd03279 ABC_sbcCD SbcCD and ot 20.2 46 0.00099 35.2 0.9 19 104-122 29-47 (213)
426 KOG0652 26S proteasome regulat 20.2 48 0.001 37.3 1.1 15 105-119 207-221 (424)
427 COG3879 Uncharacterized protei 20.2 5.8E+02 0.013 28.5 9.3 82 330-429 22-107 (247)
428 PF00158 Sigma54_activat: Sigm 20.1 50 0.0011 34.1 1.2 93 100-202 19-121 (168)
429 PF01926 MMR_HSR1: 50S ribosom 20.0 40 0.00088 31.5 0.4 15 106-120 2-16 (116)
430 PRK00846 hypothetical protein; 20.0 7.1E+02 0.015 23.1 8.9 51 364-423 10-60 (77)
No 1
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=9.8e-87 Score=779.43 Aligned_cols=356 Identities=36% Similarity=0.538 Sum_probs=323.3
Q ss_pred CCceEEEEEcCCCCchhhhcCCCcceEEeCCcEEEeccCCCCCCCCCceeecCeeeCCC-------CChHHHHHhhHHHH
Q 002139 22 EEKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFDRVFWGD-------CSTTQVYEDGAKEI 94 (960)
Q Consensus 22 ~~~I~V~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~~~~s~~~~~F~FD~VF~~~-------atQeeVYe~~v~pl 94 (960)
...|+|+|||||++.+|...+..+++.+.++++.+.++... .....|+||++||+. ++|.+||++++.++
T Consensus 3 ~ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~---k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~m 79 (1221)
T KOG0245|consen 3 GSSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGS---KDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREM 79 (1221)
T ss_pred CCceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCc---ccCCceecceeeecCCCCCCchhhHHHHHHHHhHHH
Confidence 35799999999999999999888888888776666554322 223459999999975 68999999999999
Q ss_pred HHHHhCCCCEEEEEecCCCCCCccccC--------CCchhhHHHHHHHHHhcc--cccEEEEeehhheecchhcccCC-C
Q 002139 95 ALSVVSGINSSIFAYGQTSSGKTYTMT--------GITECTVADIFDYIHRHE--ERAFVLKFSAMEIYNEAIRDLLS-T 163 (960)
Q Consensus 95 V~svL~G~N~tIfAYGqTGSGKTyTM~--------GIi~rai~dLF~~I~~~~--~~~f~V~vS~lEIYNE~V~DLL~-~ 163 (960)
++.+++|||+||||||||||||||||+ ||||+.+.+||..|.... +..|.|.|||+|||||+|+|||+ |
T Consensus 80 L~~AfEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p 159 (1221)
T KOG0245|consen 80 LDHAFEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAP 159 (1221)
T ss_pred HHHHhcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCC
Confidence 999999999999999999999999997 599999999999998654 56899999999999999999998 4
Q ss_pred C-CCCceeeeCCCCCeEeccceEEEeCCHHHHHHHHHHHhhhhccccccCCCCCCCceeEEEEEEEeccccccCCCCcee
Q 002139 164 D-NTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTT 242 (960)
Q Consensus 164 ~-~~~L~i~ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~~~~~~~~~~~ 242 (960)
. +.+|+++++|..|+||++|+...|.|+.++..++..|++.|++++|+||++|||||+||+|++.+...+... +-...
T Consensus 160 ~~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~-~l~se 238 (1221)
T KOG0245|consen 160 KSKGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDT-GLDSE 238 (1221)
T ss_pred CCCCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccC-CCcce
Confidence 4 368999999999999999999999999999999999999999999999999999999999999987665433 23467
Q ss_pred EEEEEEEEEcCCCccccccccccchhccccccccchHHHHHHHHHHhcC------CCCcccCCCCcccccccCCCCCCcc
Q 002139 243 LSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKG------RNGHINYRDSKLTRMLQPCLGGNAR 316 (960)
Q Consensus 243 ~~SkL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~------k~~hIPYRDSKLTrLLqdSLGGNsk 316 (960)
.+|+|+|||||||||++.+++.|+|+|||.+|||||++||+||.||++. +..+||||||.|||||+++||||||
T Consensus 239 k~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNSK 318 (1221)
T KOG0245|consen 239 KVSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNSK 318 (1221)
T ss_pred eeeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcch
Confidence 8999999999999999999999999999999999999999999999742 3458999999999999999999999
Q ss_pred cceEeccCCCcccHHHHHHHHHHHHHhccccccceecccCCHHHHHHHHHHHHHHHHHHhcCCCCC
Q 002139 317 TAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKELARLESELRSPAPA 382 (960)
Q Consensus 317 T~mI~tISPs~~~~eETlsTLrFAsrAK~Ikn~~~vN~~~s~~~lik~Lq~Ei~~Le~eL~~~~~~ 382 (960)
|+|||+|||+..||+|||+|||||.|||+|+|+|+||+.++.+ +|++|++||++|+..|+.....
T Consensus 319 TaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaK-LIRELreEv~rLksll~~~~~~ 383 (1221)
T KOG0245|consen 319 TAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAK-LIRELREEVARLKSLLRAQGLG 383 (1221)
T ss_pred hhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHH-HHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999887 8999999999999999766543
No 2
>PF11995 DUF3490: Domain of unknown function (DUF3490); InterPro: IPR021881 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 160 amino acids in length. This domain is found associated with PF00225 from PFAM. This domain is found associated with PF00225 from PFAM. This domain has two conserved sequence motifs: EVE and ESA.
Probab=100.00 E-value=1.2e-88 Score=661.75 Aligned_cols=161 Identities=66% Similarity=1.107 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHHhhhcccceeeeheeeeeecCCCCCceeEEeeehhhhhHHHHhhcCCCccCCCccccHHHHHHHHHHHH
Q 002139 782 EFERQRRELFQLWQTCNVSLVHRTYFFLLFRGDPSDSIYMGVELKRLSFLKESFSQGNMAMQDGRVLSLASSERALRRER 861 (960)
Q Consensus 782 ~f~~~~~~iieLW~~C~vslvHRtyFfllfkGd~~D~iYmevElrrL~~l~~~~~~~~~~~~~~~~~~~~ss~~~l~~er 861 (960)
+||+||++||||||+|||||||||||||||||||+|+||||||||||+|||+||++++++++|++++|++||+|||+|||
T Consensus 1 ~Fe~qq~~IIeLW~~C~VsLvHRTyFfLLFkGdpaD~iYmEVElRRLs~Lk~~fs~~~~~~~~~~~~s~~sS~kaL~rER 80 (161)
T PF11995_consen 1 EFERQQQEIIELWHACNVSLVHRTYFFLLFKGDPADSIYMEVELRRLSFLKETFSEGGQAAGGGHTLSLASSIKALRRER 80 (161)
T ss_pred ChHHHHHHHHHHHHhcCcchhhhhhhhheecCCcccceEEEeehHHHHHHHHHhccCCcccCCCCcccHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCHHHHHHHHHhhCCCCCcccchhhhhhhccCCcccchhHHHHHHHHHHHhhhccccccccccccccccC
Q 002139 862 ETLSKLMRRRLSADERNKLYQKWGIGLNSKRRRLQLANHLWSNSKDMNRITESAAIIAKLIRFVEQGDALKGMFGLSFTP 941 (960)
Q Consensus 862 ~~l~~~~~~~l~~~ere~ly~kw~i~l~~k~r~lql~~~lw~~~~d~~hv~esa~~vaklv~~~~~~~~~kemf~l~f~~ 941 (960)
+||||||++|||.+|||+||.||||||+||||||||||+|||||+||+||+|||+||||||||||||+|+||||||||+|
T Consensus 81 ~~L~k~m~~rls~eere~ly~kWgI~l~sK~RrlQL~~~LWt~~~d~~Hv~eSA~lVAkLvgf~e~g~~~KEMFgLnF~~ 160 (161)
T PF11995_consen 81 EMLAKQMQKRLSREEREELYKKWGIPLDSKQRRLQLANRLWTDTKDMEHVRESAELVAKLVGFVEPGQASKEMFGLNFTP 160 (161)
T ss_pred HHHHHHHHHhCCHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhccccccHHHHHccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 002139 942 L 942 (960)
Q Consensus 942 ~ 942 (960)
|
T Consensus 161 ~ 161 (161)
T PF11995_consen 161 P 161 (161)
T ss_pred C
Confidence 6
No 3
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.4e-86 Score=785.57 Aligned_cols=398 Identities=54% Similarity=0.772 Sum_probs=363.3
Q ss_pred CCCceEEEEEcCCCCchhhhcCCCcceEEeCCcEEEeccCC--CCCCCCCceeecCeeeCCCCChHHHHHhhHHHHHHHH
Q 002139 21 REEKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTL--REGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSV 98 (960)
Q Consensus 21 ~~~~I~V~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~--~~~s~~~~~F~FD~VF~~~atQeeVYe~~v~plV~sv 98 (960)
.+.+|.|+|||||++++|...++.+.|.|.++..+...... +.... +..|.||+||+++++|++||+.+++|||.+|
T Consensus 4 ~~~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~ 82 (675)
T KOG0242|consen 4 TEEKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPEKSK-PEKYEFDRVFGEESTQEDVYERTTKPLLLSV 82 (675)
T ss_pred ccceeEEEEEeCCCCccccccCCccceEecCCceeEeecccccccccc-ccceeeeeecCCCCCHHHHHHhccHHHHHHH
Confidence 56799999999999999888899999999999988776532 23322 6799999999999999999999999999999
Q ss_pred hCCCCEEEEEecCCCCCCccccCC------CchhhHHHHHHHHHhcccccEEEEeehhheecchhcccCCCCCCCceeee
Q 002139 99 VSGINSSIFAYGQTSSGKTYTMTG------ITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLD 172 (960)
Q Consensus 99 L~G~N~tIfAYGqTGSGKTyTM~G------Ii~rai~dLF~~I~~~~~~~f~V~vS~lEIYNE~V~DLL~~~~~~L~i~e 172 (960)
++|||+||||||||||||||||.| |+|.++.|||++|.+..++.|.|+|||+|||||.|+|||+++..++++++
T Consensus 83 l~G~N~TVFAYG~TgSGKTyTM~G~~~~PGii~la~~dif~~I~~~~~r~f~v~vSYlEIYNE~I~DLL~~~~~~L~irE 162 (675)
T KOG0242|consen 83 LEGFNATVFAYGQTGSGKTYTMSGSEDDPGIIPLAMKDIFEKIDKSGEREFSVRVSYLEIYNERIRDLLNPDGGDLRLRE 162 (675)
T ss_pred hcCcccceeeecCCCCCCceEEeccCCCCCeeehHHHHHHHHHHhcCCceeEEEEEEEEEeccccccccCCCCCCceEeE
Confidence 999999999999999999999965 78999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEeccceEEEeCCHHHHHHHHHHHhhhhccccccCCCCCCCceeEEEEEEEeccccccCCCCceeEEEEEEEEEc
Q 002139 173 DPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDL 252 (960)
Q Consensus 173 d~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~~~~~~~~~~~~~SkL~fVDL 252 (960)
|+.+|++|.||+++.|.|+++++.||..|+++|+++.|.+|..|||||+||+|+|++..+... . ..++|+||||
T Consensus 163 D~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~-----~-~~s~L~lIDL 236 (675)
T KOG0242|consen 163 DSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREAS-----S-RVSKLNLIDL 236 (675)
T ss_pred cCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEecccccc-----c-hhheehhhhh
Confidence 999999999999999999999999999999999999999999999999999999998765422 1 6789999999
Q ss_pred CCCccccccccccchhccccccccchHHHHHHHHHHhcC-CCCcccCCCCcccccccCCCCCCcccceEeccCCCcccHH
Q 002139 253 AGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKG-RNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVE 331 (960)
Q Consensus 253 AGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~-k~~hIPYRDSKLTrLLqdSLGGNskT~mI~tISPs~~~~e 331 (960)
|||||++++++.|.|++||++||+||++||+||++|+++ ..+||||||||||||||++|||||+|+|||||+|+..+++
T Consensus 237 AGSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~ 316 (675)
T KOG0242|consen 237 AGSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYE 316 (675)
T ss_pred hhhhhhhhhhccceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHH
Confidence 999999999999999999999999999999999999998 5679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccccceecccCCHHHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHH-HHHHHHH
Q 002139 332 QTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKME-REIRELT 410 (960)
Q Consensus 332 ETlsTLrFAsrAK~Ikn~~~vN~~~s~~~lik~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~ek~~~i~~le-~ei~el~ 410 (960)
||.+||+||+|||.|++++.+|+.+.++.+++.+++++..|+.++.......... ..++..+++++ ++..++.
T Consensus 317 eT~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~~~~~~~~~~~------~~~~~~~~~~e~~~~~~~~ 390 (675)
T KOG0242|consen 317 ETKNTLKFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAELERLKKKLEPE------REQELLIQKLEKEEVEELL 390 (675)
T ss_pred HHHHHHHHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHHHHhhccccccc------hhhHHHHhHhhhhhHhhhh
Confidence 9999999999999999999999999999999999999999999998755443211 24566777777 7888888
Q ss_pred HHHHHHHHHHHHHHHHhccCC
Q 002139 411 KQRDLAQSRVEDLLRMVGCDQ 431 (960)
Q Consensus 411 ~q~d~~q~r~~~l~~~~~~~~ 431 (960)
.+++.++...+.+........
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~ 411 (675)
T KOG0242|consen 391 PQRSEIQSLVELLKRLSASRR 411 (675)
T ss_pred hhhhHHHHHHHHHhhhccccc
Confidence 888888888887777665544
No 4
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=6.2e-86 Score=786.55 Aligned_cols=360 Identities=37% Similarity=0.585 Sum_probs=327.2
Q ss_pred CCCCCCceEEEEEcCCCCchhhhcCCCcceEEeC-CcEEEeccCCCCCCCCCceeecCeeeCCCCChHHHHHhhHHHHHH
Q 002139 18 PSAREEKILVLVRLRPLSEKEITADEATDWECIN-DTTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIAL 96 (960)
Q Consensus 18 ~~~~~~~I~V~VRVRPl~~~E~~~~~~~~~~~~~-~~ti~~~~~~~~~s~~~~~F~FD~VF~~~atQeeVYe~~v~plV~ 96 (960)
+...+.+|+|+|||||++.+|.....+.++.|.+ .+-|.++...... .-.+.|+||+||||.+.|++||+.++.|+|.
T Consensus 44 ~~e~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~sk-~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~ 122 (1041)
T KOG0243|consen 44 HKEKEVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIASK-QIDKTFTFDKVFGPESQQEDLYDQAVSPIIK 122 (1041)
T ss_pred CCCCCCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecccccc-cccceeecceeeCcchhHHHHHHHHHHHHHH
Confidence 3455679999999999999999888888899988 4557777663322 2467999999999999999999999999999
Q ss_pred HHhCCCCEEEEEecCCCCCCccccCC--------------CchhhHHHHHHHHHhcccccEEEEeehhheecchhcccCC
Q 002139 97 SVVSGINSSIFAYGQTSSGKTYTMTG--------------ITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLS 162 (960)
Q Consensus 97 svL~G~N~tIfAYGqTGSGKTyTM~G--------------Ii~rai~dLF~~I~~~~~~~f~V~vS~lEIYNE~V~DLL~ 162 (960)
.|+.|||||||||||||+||||||.| ||||++.+||+.++... .+|.|+|||+|+|||.++|||+
T Consensus 123 eVl~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~~-~EYsvKVSfLELYNEEl~DLLa 201 (1041)
T KOG0243|consen 123 EVLEGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQG-AEYSVKVSFLELYNEELTDLLA 201 (1041)
T ss_pred HHhccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhcC-CeEEEEEEehhhhhHHHHHhcC
Confidence 99999999999999999999999964 99999999999999766 7999999999999999999998
Q ss_pred CCCC---CceeeeCC-----CCCeEeccceEEEeCCHHHHHHHHHHHhhhhccccccCCCCCCCceeEEEEEEEeccccc
Q 002139 163 TDNT---PLRLLDDP-----EKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREF 234 (960)
Q Consensus 163 ~~~~---~L~i~ed~-----~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~~~ 234 (960)
+... .+++.+++ .+|++|.||.|+.|.++.++..+|.+|.+.|++++|.||..|||||+||+|+|......
T Consensus 202 ~~~~~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t- 280 (1041)
T KOG0243|consen 202 SEDTSDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENT- 280 (1041)
T ss_pred CccccccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCC-
Confidence 7653 45666655 68899999999999999999999999999999999999999999999999999665433
Q ss_pred cCCCCceeEEEEEEEEEcCCCccccccccccchhccccccccchHHHHHHHHHHhcCCCCcccCCCCcccccccCCCCCC
Q 002139 235 LGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGN 314 (960)
Q Consensus 235 ~~~~~~~~~~SkL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPYRDSKLTrLLqdSLGGN 314 (960)
..+..-...|+|+||||||||..+++|+.+.|.+|++.||+||++||+||+||..+ .+|||||+|||||||||||||.
T Consensus 281 -~~geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~-s~HIPYRESKLTRLLQDSLGGk 358 (1041)
T KOG0243|consen 281 -PEGEELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEH-SGHIPYRESKLTRLLQDSLGGK 358 (1041)
T ss_pred -CcchhhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHcc-CCCCCchHHHHHHHHHHHhCCC
Confidence 23344467899999999999999999999999999999999999999999999985 5699999999999999999999
Q ss_pred cccceEeccCCCcccHHHHHHHHHHHHHhccccccceecccCCHHHHHHHHHHHHHHHHHHhcCCCCC
Q 002139 315 ARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKELARLESELRSPAPA 382 (960)
Q Consensus 315 skT~mI~tISPs~~~~eETlsTLrFAsrAK~Ikn~~~vN~~~s~~~lik~Lq~Ei~~Le~eL~~~~~~ 382 (960)
+||+|||||||+..+++||++||.||.|||.|+|+|.+|+.+..+.+++.|-.||.+|+.+|...+..
T Consensus 359 TKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaReK 426 (1041)
T KOG0243|consen 359 TKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAAREK 426 (1041)
T ss_pred ceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999876644
No 5
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=7.1e-86 Score=759.32 Aligned_cols=357 Identities=41% Similarity=0.576 Sum_probs=322.6
Q ss_pred CCCceEEEEEcCCCCchhhhcCCCcceEEeCC-cEEEeccCCCCCCCCCceeecCeeeCCCCChHHHHHhhHHHHHHHHh
Q 002139 21 REEKILVLVRLRPLSEKEITADEATDWECIND-TTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVV 99 (960)
Q Consensus 21 ~~~~I~V~VRVRPl~~~E~~~~~~~~~~~~~~-~ti~~~~~~~~~s~~~~~F~FD~VF~~~atQeeVYe~~v~plV~svL 99 (960)
...+|+|+||+||++..+........+.+... ..+.+.++.......++.|+||+||+++++|++||..+++|+|++|+
T Consensus 3 ~~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl 82 (574)
T KOG4280|consen 3 PACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVL 82 (574)
T ss_pred cccceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHh
Confidence 45789999999999998877666555444433 33444444333334467899999999999999999999999999999
Q ss_pred CCCCEEEEEecCCCCCCccccC-------CCchhhHHHHHHHHHhccc-ccEEEEeehhheecchhcccCCCCC-CCcee
Q 002139 100 SGINSSIFAYGQTSSGKTYTMT-------GITECTVADIFDYIHRHEE-RAFVLKFSAMEIYNEAIRDLLSTDN-TPLRL 170 (960)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM~-------GIi~rai~dLF~~I~~~~~-~~f~V~vS~lEIYNE~V~DLL~~~~-~~L~i 170 (960)
+|||+||||||||||||||||. ||+|+++.+||.+|...++ ..|.|+|||+|||||.|+|||++.+ +.+.+
T Consensus 83 ~GyNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~~~~l~l 162 (574)
T KOG4280|consen 83 EGYNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVNPKGLEL 162 (574)
T ss_pred cccCceEEEeccCCCCCceEeeCCChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccCcCCcee
Confidence 9999999999999999999996 5899999999999998764 4699999999999999999999988 58999
Q ss_pred eeCCCCCeEeccceEEEeCCHHHHHHHHHHHhhhhccccccCCCCCCCceeEEEEEEEeccccccCCCCceeEEEEEEEE
Q 002139 171 LDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFV 250 (960)
Q Consensus 171 ~ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~~~~~~~~~~~~~SkL~fV 250 (960)
+++|..|+||+||+++.|.++++++.+|..|.++|++++|.||..|||||+||+|+|++... ...+......|+|+||
T Consensus 163 re~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~--~~~~~~~~~~~rlnlv 240 (574)
T KOG4280|consen 163 REDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEK--SDGGLMSGRSSKLNLV 240 (574)
T ss_pred eEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecc--cCCCccccccceeeee
Confidence 99999999999999999999999999999999999999999999999999999999998322 2334556788999999
Q ss_pred EcCCCccccccccccchhccccccccchHHHHHHHHHHhcCCCCcccCCCCcccccccCCCCCCcccceEeccCCCcccH
Q 002139 251 DLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHV 330 (960)
Q Consensus 251 DLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mI~tISPs~~~~ 330 (960)
|||||||..++++.|+|+||+.+||+||++||+||.+|++++++||||||||||+||||||||||+|+|||||+|+..++
T Consensus 241 DLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~ 320 (574)
T KOG4280|consen 241 DLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNY 320 (574)
T ss_pred eccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCchhhhh
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccccccceecccCCHHHHHHHHHHHHHHHHHHhcCCC
Q 002139 331 EQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKELARLESELRSPA 380 (960)
Q Consensus 331 eETlsTLrFAsrAK~Ikn~~~vN~~~s~~~lik~Lq~Ei~~Le~eL~~~~ 380 (960)
+||++||+||+|||.|+|+|.+|+.+. .+++++|++||++|+.+|...+
T Consensus 321 ~ETlsTLrfA~Rak~I~nk~~ined~~-~~~~~~lq~ei~~Lk~~l~~~~ 369 (574)
T KOG4280|consen 321 EETLSTLRFAQRAKAIKNKPVINEDPK-DALLRELQEEIERLKKELDPGG 369 (574)
T ss_pred HHHHHHHHHHHHHHHhhccccccCCcc-hhhHHHHHHHHHHHHHhhcccc
Confidence 999999999999999999999999987 4689999999999999986543
No 6
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=7.7e-79 Score=731.24 Aligned_cols=347 Identities=37% Similarity=0.571 Sum_probs=308.1
Q ss_pred CCceEEEEEcCCCCchhhhcCCCcceEEeCCcEEEeccCCCCCCCCCceeecCeeeCCCCChHHHHHhhHHHHHHHHhCC
Q 002139 22 EEKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSG 101 (960)
Q Consensus 22 ~~~I~V~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~~~~s~~~~~F~FD~VF~~~atQeeVYe~~v~plV~svL~G 101 (960)
+.+|+|+|||||++..|. +.. .+....+.++.+. .+.|.||+||+++++|++||+.++.|+|+++++|
T Consensus 97 ds~VkV~VRVRPl~~~E~--g~~-iV~~~s~dsl~I~---------~qtFtFD~VFdp~aTQedVFe~vv~PLV~svLdG 164 (1320)
T PLN03188 97 DSGVKVIVRMKPLNKGEE--GEM-IVQKMSNDSLTIN---------GQTFTFDSIADPESTQEDIFQLVGAPLVENCLAG 164 (1320)
T ss_pred CCCeEEEEEcCCCCCccC--CCe-eEEEcCCCeEEEe---------CcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 569999999999998863 222 2333344555542 2589999999999999999999999999999999
Q ss_pred CCEEEEEecCCCCCCccccCC----------------CchhhHHHHHHHHHhc------ccccEEEEeehhheecchhcc
Q 002139 102 INSSIFAYGQTSSGKTYTMTG----------------ITECTVADIFDYIHRH------EERAFVLKFSAMEIYNEAIRD 159 (960)
Q Consensus 102 ~N~tIfAYGqTGSGKTyTM~G----------------Ii~rai~dLF~~I~~~------~~~~f~V~vS~lEIYNE~V~D 159 (960)
||+||||||||||||||||+| |+||++++||..|... ....|.|+|||+|||||+|+|
T Consensus 165 yNaTIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~D 244 (1320)
T PLN03188 165 FNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITD 244 (1320)
T ss_pred CcceeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCccee
Confidence 999999999999999999964 8999999999999753 245799999999999999999
Q ss_pred cCCCCCCCceeeeCCCCCeEeccceEEEeCCHHHHHHHHHHHhhhhccccccCCCCCCCceeEEEEEEEeccccccCCCC
Q 002139 160 LLSTDNTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKEN 239 (960)
Q Consensus 160 LL~~~~~~L~i~ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~~~~~~~~ 239 (960)
||++....+.|++++.+|++|.||+++.|.+++++..+|..|..+|++++|.+|..|||||+||+|+|++...... .+.
T Consensus 245 LLsp~~k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~-dg~ 323 (1320)
T PLN03188 245 LLDPSQKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVA-DGL 323 (1320)
T ss_pred ccccccCCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeecccC-CCC
Confidence 9999888999999999999999999999999999999999999999999999999999999999999987543321 223
Q ss_pred ceeEEEEEEEEEcCCCccccccccccchhccccccccchHHHHHHHHHHhc----CCCCcccCCCCcccccccCCCCCCc
Q 002139 240 STTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSK----GRNGHINYRDSKLTRMLQPCLGGNA 315 (960)
Q Consensus 240 ~~~~~SkL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~----~k~~hIPYRDSKLTrLLqdSLGGNs 315 (960)
.....|+|+|||||||||...+++.|.+++|+++||+||++||+||.+|+. ++..||||||||||+||||+|||||
T Consensus 324 ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGNS 403 (1320)
T PLN03188 324 SSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNA 403 (1320)
T ss_pred cceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCCc
Confidence 345689999999999999999999999999999999999999999999975 3456999999999999999999999
Q ss_pred ccceEeccCCCcccHHHHHHHHHHHHHhccccccceecccCCH-----HHHHHHHHHHHHHHHHHhcCCCC
Q 002139 316 RTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSD-----KALVKHLQKELARLESELRSPAP 381 (960)
Q Consensus 316 kT~mI~tISPs~~~~eETlsTLrFAsrAK~Ikn~~~vN~~~s~-----~~lik~Lq~Ei~~Le~eL~~~~~ 381 (960)
+|+|||||||+..+++||++||+||+|||.|+|+|++|..+.+ ..++++|+.|+.+|+.....+..
T Consensus 404 KTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~~vn~LrelIr~Lk~EL~rLK~~~~~p~~ 474 (1320)
T PLN03188 404 KLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNFLREVIRQLRDELQRVKANGNNPTN 474 (1320)
T ss_pred eEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999999999999999999987654 34788899999999988655443
No 7
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=1.7e-78 Score=682.81 Aligned_cols=338 Identities=39% Similarity=0.542 Sum_probs=309.6
Q ss_pred CCCceEEEEEcCCCCchhhhcCCCcceEEeC-CcEEEeccCCCCCCCCCceeecCeeeCCCCChHHHHHhhHHHHHHHHh
Q 002139 21 REEKILVLVRLRPLSEKEITADEATDWECIN-DTTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVV 99 (960)
Q Consensus 21 ~~~~I~V~VRVRPl~~~E~~~~~~~~~~~~~-~~ti~~~~~~~~~s~~~~~F~FD~VF~~~atQeeVYe~~v~plV~svL 99 (960)
.+..|+|+||+||++..|...++....-..+ ..++.+..+ .+.+.|.||+||.|+++|++||+.++.|+|++||
T Consensus 5 ~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~-----~~~~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL 79 (607)
T KOG0240|consen 5 AECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETT-----KETKTYVFDRVFSPNATQEDVYEFAAKPIVDDVL 79 (607)
T ss_pred CCCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEecc-----cccccceeeeecCCCccHHHHHHHHHHHHHHHHh
Confidence 5678999999999999998766554433333 455555432 1236899999999999999999999999999999
Q ss_pred CCCCEEEEEecCCCCCCccccC---------CCchhhHHHHHHHHHhccc-ccEEEEeehhheecchhcccCCCCCCCce
Q 002139 100 SGINSSIFAYGQTSSGKTYTMT---------GITECTVADIFDYIHRHEE-RAFVLKFSAMEIYNEAIRDLLSTDNTPLR 169 (960)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM~---------GIi~rai~dLF~~I~~~~~-~~f~V~vS~lEIYNE~V~DLL~~~~~~L~ 169 (960)
.|||+||||||||||||||||. ||+||++.+||++|..... ..|.|+|||+|||+|+|+|||++.+.++.
T Consensus 80 ~GYNGTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~k~nls 159 (607)
T KOG0240|consen 80 LGYNGTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPEKTNLS 159 (607)
T ss_pred cccceeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcccCCce
Confidence 9999999999999999999995 6999999999999997664 68999999999999999999999999999
Q ss_pred eeeCCCCCeEeccceEEEeCCHHHHHHHHHHHhhhhccccccCCCCCCCceeEEEEEEEeccccccCCCCceeEEEEEEE
Q 002139 170 LLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNF 249 (960)
Q Consensus 170 i~ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~~~~~~~~~~~~~SkL~f 249 (960)
+.+|...+++|.|+++..|.+++++++++..|..+|+++.|.||.+|||||.||+|+|.+...+ ......|+|+|
T Consensus 160 vheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e-----~~~~~~gkLyL 234 (607)
T KOG0240|consen 160 VHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVE-----DKRKLSGKLYL 234 (607)
T ss_pred eecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEecccc-----chhhccccEEE
Confidence 9999999999999999999999999999999999999999999999999999999999987543 34568899999
Q ss_pred EEcCCCccccccccccchhccccccccchHHHHHHHHHHhcCCCCcccCCCCcccccccCCCCCCcccceEeccCCCccc
Q 002139 250 VDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSH 329 (960)
Q Consensus 250 VDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mI~tISPs~~~ 329 (960)
|||||||+.+++++.|.-+.|+.+||+||.|||+||++|+.|...|||||||||||||||+|||||||.||+|++|+..+
T Consensus 235 VDLaGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n 314 (607)
T KOG0240|consen 235 VDLAGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLN 314 (607)
T ss_pred EEcccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCcccc
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccccccceecccCCHHHHHHHHHHH
Q 002139 330 VEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKE 368 (960)
Q Consensus 330 ~eETlsTLrFAsrAK~Ikn~~~vN~~~s~~~lik~Lq~E 368 (960)
-.||.+||+|+.|||.|+|.+.+|...+..+..+.|+.+
T Consensus 315 ~~ET~STl~fg~rak~ikN~v~~n~e~~~e~~~r~~e~~ 353 (607)
T KOG0240|consen 315 EAETKSTLRFGNRAKTIKNTVWVNLELTAEEWKRKLEKK 353 (607)
T ss_pred ccccccchhhccccccccchhhhhhHhhHHHHHHHHHHH
Confidence 999999999999999999999999999888777766543
No 8
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=4.8e-77 Score=662.55 Aligned_cols=321 Identities=40% Similarity=0.622 Sum_probs=296.1
Q ss_pred ceEEEEEcCCCCchhhhcCCCcceEEeCCcEEEeccCCC--------CCCCCCceeecCeeeCCCCChHHHHHhhHHHHH
Q 002139 24 KILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLR--------EGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIA 95 (960)
Q Consensus 24 ~I~V~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~~--------~~s~~~~~F~FD~VF~~~atQeeVYe~~v~plV 95 (960)
+|+|+|||||+++.|...+....|.+.++.++++..... .....++.|.||+||+++++|++||+.+++|+|
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~plv 80 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKPLV 80 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHHHH
Confidence 599999999999999888888889998888877765432 113346799999999999999999999999999
Q ss_pred HHHhCCCCEEEEEecCCCCCCccccCC------CchhhHHHHHHHHHhcc-cccEEEEeehhheecchhcccCCCCCCCc
Q 002139 96 LSVVSGINSSIFAYGQTSSGKTYTMTG------ITECTVADIFDYIHRHE-ERAFVLKFSAMEIYNEAIRDLLSTDNTPL 168 (960)
Q Consensus 96 ~svL~G~N~tIfAYGqTGSGKTyTM~G------Ii~rai~dLF~~I~~~~-~~~f~V~vS~lEIYNE~V~DLL~~~~~~L 168 (960)
+++++|||+||||||||||||||||+| |+|+++++||+.+.... ...|.|++||+|||||+|+|||++...++
T Consensus 81 ~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~l 160 (338)
T cd01370 81 DGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPSSGPL 160 (338)
T ss_pred HHHHCCCCceEEeeCCCCCCCeEEEcCCCCCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCCCCCc
Confidence 999999999999999999999999965 99999999999998776 67899999999999999999999988899
Q ss_pred eeeeCCCCCeEeccceEEEeCCHHHHHHHHHHHhhhhccccccCCCCCCCceeEEEEEEEeccccccCCCCceeEEEEEE
Q 002139 169 RLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVN 248 (960)
Q Consensus 169 ~i~ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~~~~~~~~~~~~~SkL~ 248 (960)
.+++++.++++|.|++++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|.+..... ........|+|+
T Consensus 161 ~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~--~~~~~~~~s~l~ 238 (338)
T cd01370 161 ELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTA--SINQQVRIGKLS 238 (338)
T ss_pred eEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCC--CCCCcEEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999998765421 123456789999
Q ss_pred EEEcCCCccccccccccchhccccccccchHHHHHHHHHHhcCC--CCcccCCCCcccccccCCCCCCcccceEeccCCC
Q 002139 249 FVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGR--NGHINYRDSKLTRMLQPCLGGNARTAIICTLSPA 326 (960)
Q Consensus 249 fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k--~~hIPYRDSKLTrLLqdSLGGNskT~mI~tISPs 326 (960)
|||||||||..+++..|.+++|+.+||+||++|++||.+|+.+. ..||||||||||+||+|+|||||+|+|||||||+
T Consensus 239 ~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~ 318 (338)
T cd01370 239 LIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPS 318 (338)
T ss_pred EEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCc
Confidence 99999999999999999999999999999999999999999876 3799999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHhccc
Q 002139 327 RSHVEQTRNTLLFACCAKEV 346 (960)
Q Consensus 327 ~~~~eETlsTLrFAsrAK~I 346 (960)
..+++||++||+||+|||+|
T Consensus 319 ~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 319 SSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred hhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999986
No 9
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=1.2e-76 Score=659.16 Aligned_cols=315 Identities=38% Similarity=0.572 Sum_probs=283.9
Q ss_pred CceEEEEEcCCCCchhhhcCCCcceEEeCCcEEEeccCCCCCCCCCceeecCeeeCCCCChHHHHHhhHHHHHHHHhCCC
Q 002139 23 EKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGI 102 (960)
Q Consensus 23 ~~I~V~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~~~~s~~~~~F~FD~VF~~~atQeeVYe~~v~plV~svL~G~ 102 (960)
.+|+|+|||||+...|...+....+...++.++.+... .++.|.||+||+++++|++||+.+++|+|+++++||
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~~~~~~~------~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~ 74 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWHSH------PPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGY 74 (337)
T ss_pred CCeEEEEEcCcCChhhcccCCCeEEEEcCCCcEEeeCC------CCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 47999999999999997555555555555555555332 146899999999999999999999999999999999
Q ss_pred CEEEEEecCCCCCCccccC--------------CCchhhHHHHHHHHHhc-----ccccEEEEeehhheecchhcccCCC
Q 002139 103 NSSIFAYGQTSSGKTYTMT--------------GITECTVADIFDYIHRH-----EERAFVLKFSAMEIYNEAIRDLLST 163 (960)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~--------------GIi~rai~dLF~~I~~~-----~~~~f~V~vS~lEIYNE~V~DLL~~ 163 (960)
|+||||||||||||||||+ ||+|+++++||..+... ....|.|++||+|||||+|+|||++
T Consensus 75 n~ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~ 154 (337)
T cd01373 75 NGSIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDP 154 (337)
T ss_pred ceeEEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCC
Confidence 9999999999999999996 47899999999998754 3457899999999999999999999
Q ss_pred CCCCceeeeCCCCCeEeccceEEEeCCHHHHHHHHHHHhhhhccccccCCCCCCCceeEEEEEEEeccccccCCCCceeE
Q 002139 164 DNTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTL 243 (960)
Q Consensus 164 ~~~~L~i~ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~~~~~~~~~~~~ 243 (960)
....+.+++++.+|++|.|++++.|.++++++++|..|.++|++++|.+|..|||||+||+|+|.+.... .......
T Consensus 155 ~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~---~~~~~~~ 231 (337)
T cd01373 155 TSRNLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKK---ASSTNIR 231 (337)
T ss_pred CCCCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecC---CCCCcEE
Confidence 8889999999999999999999999999999999999999999999999999999999999999875432 1222456
Q ss_pred EEEEEEEEcCCCccccccccccchhccccccccchHHHHHHHHHHhc---CCCCcccCCCCcccccccCCCCCCcccceE
Q 002139 244 SASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSK---GRNGHINYRDSKLTRMLQPCLGGNARTAII 320 (960)
Q Consensus 244 ~SkL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~---~k~~hIPYRDSKLTrLLqdSLGGNskT~mI 320 (960)
.|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|++ ++..||||||||||+||||+|||||+|+||
T Consensus 232 ~s~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~I 311 (337)
T cd01373 232 TSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTII 311 (337)
T ss_pred EEEEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEEE
Confidence 79999999999999999999999999999999999999999999975 346799999999999999999999999999
Q ss_pred eccCCCcccHHHHHHHHHHHHHhccc
Q 002139 321 CTLSPARSHVEQTRNTLLFACCAKEV 346 (960)
Q Consensus 321 ~tISPs~~~~eETlsTLrFAsrAK~I 346 (960)
|||||+..+++||++||+||.|||+|
T Consensus 312 ~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 312 ANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred EEECCCcccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999986
No 10
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.5e-76 Score=680.88 Aligned_cols=377 Identities=33% Similarity=0.517 Sum_probs=332.3
Q ss_pred CCceEEEEEcCCCCchhhhcCCCcceEEeCCcEEEeccCCC---CCCCCCceeecCeeeCCC-------CChHHHHHhhH
Q 002139 22 EEKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLR---EGSTFPSAYTFDRVFWGD-------CSTTQVYEDGA 91 (960)
Q Consensus 22 ~~~I~V~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~~---~~s~~~~~F~FD~VF~~~-------atQeeVYe~~v 91 (960)
+.+|+|+|||||++.+|+.....+.+.+...++++...+.. +.+..+++|.||++|++. +.|+.||+.++
T Consensus 3 ~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG 82 (1714)
T KOG0241|consen 3 DAKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLG 82 (1714)
T ss_pred CcceEEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcc
Confidence 56899999999999999998888888888777776544321 223568999999999985 58999999999
Q ss_pred HHHHHHHhCCCCEEEEEecCCCCCCccccC------CCchhhHHHHHHHHHhc--ccccEEEEeehhheecchhcccCCC
Q 002139 92 KEIALSVVSGINSSIFAYGQTSSGKTYTMT------GITECTVADIFDYIHRH--EERAFVLKFSAMEIYNEAIRDLLST 163 (960)
Q Consensus 92 ~plV~svL~G~N~tIfAYGqTGSGKTyTM~------GIi~rai~dLF~~I~~~--~~~~f~V~vS~lEIYNE~V~DLL~~ 163 (960)
..+|+++|+|||+||||||||||||||||+ ||||+.+..||..|... +...|.|.|||+|||||++||||+|
T Consensus 83 ~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLLdP 162 (1714)
T KOG0241|consen 83 EGILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLLDP 162 (1714)
T ss_pred hHHHHHHhhccceeeEEecccCCCceeEeeccCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhhCC
Confidence 999999999999999999999999999997 59999999999999764 4678999999999999999999998
Q ss_pred CC--CCceeeeCCCCCeEeccceEEEeCCHHHHHHHHHHHhhhhccccccCCCCCCCceeEEEEEEEeccccccCCCCce
Q 002139 164 DN--TPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENST 241 (960)
Q Consensus 164 ~~--~~L~i~ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~~~~~~~~~~ 241 (960)
.. +.++++++.-.|.||.||++..|.|++++..++..|++.|++++|+||..|||||+||.|.|.+...+. ..+.+.
T Consensus 163 k~ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~-ktg~Sg 241 (1714)
T KOG0241|consen 163 KGSSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDL-KTGHSG 241 (1714)
T ss_pred CCCcceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEecc-ccCcch
Confidence 65 579999999999999999999999999999999999999999999999999999999999999876553 234455
Q ss_pred eEEEEEEEEEcCCCccccccccccchhccccccccchHHHHHHHHHHhcC-----CCCcccCCCCcccccccCCCCCCcc
Q 002139 242 TLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKG-----RNGHINYRDSKLTRMLQPCLGGNAR 316 (960)
Q Consensus 242 ~~~SkL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~-----k~~hIPYRDSKLTrLLqdSLGGNsk 316 (960)
...|+|.+||||||||++++++.|.|++||++||+||.+||.||.+|+.. +..+||||||.||+||||+|||||+
T Consensus 242 eKvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGGNsr 321 (1714)
T KOG0241|consen 242 EKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGGNSR 321 (1714)
T ss_pred hheeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCCCce
Confidence 67899999999999999999999999999999999999999999999853 4568999999999999999999999
Q ss_pred cceEeccCCCcccHHHHHHHHHHHHHhccccccceecccCCHHHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHH
Q 002139 317 TAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKELARLESELRSPAPASSTCDYVALLRKKD 396 (960)
Q Consensus 317 T~mI~tISPs~~~~eETlsTLrFAsrAK~Ikn~~~vN~~~s~~~lik~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~ek~ 396 (960)
|+||+||||++.+|+||++|||||.|||.|+|.+.+|..+... .+++|+.|+..|+.+|...... ...+....+.+.+
T Consensus 322 TvMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpnar-virElReEve~lr~qL~~ae~~-~~~el~e~l~ese 399 (1714)
T KOG0241|consen 322 TVMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNAR-VIRELREEVEKLREQLEQAEAM-KLPELKEKLEESE 399 (1714)
T ss_pred eEEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchHH-HHHHHHHHHHHHHHHHhhhhhc-cchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998764 7899999999999999873322 2333333444443
Q ss_pred HHHHH
Q 002139 397 LQIQK 401 (960)
Q Consensus 397 ~~i~~ 401 (960)
.-|++
T Consensus 400 kli~e 404 (1714)
T KOG0241|consen 400 KLIKE 404 (1714)
T ss_pred HHHHH
Confidence 33333
No 11
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=1.7e-75 Score=651.84 Aligned_cols=317 Identities=33% Similarity=0.517 Sum_probs=289.4
Q ss_pred CceEEEEEcCCCCchhhhcCCCcceEEeCCcEEEeccCCC--------CCCCCCceeecCeeeCCCCChHHHHHhhHHHH
Q 002139 23 EKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLR--------EGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEI 94 (960)
Q Consensus 23 ~~I~V~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~~--------~~s~~~~~F~FD~VF~~~atQeeVYe~~v~pl 94 (960)
.+|+|+|||||++..|...++...|.+.++.+|.+..+.. .....++.|.||+||+++++|++||+.++.|+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p~ 80 (345)
T cd01368 1 DPVKVYLRVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALPL 80 (345)
T ss_pred CCEEEEEEeCcCCchhhccCCCceEEEcCCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHHH
Confidence 4799999999999999887888888888988888876432 12345679999999999999999999999999
Q ss_pred HHHHhCCCCEEEEEecCCCCCCccccCC------CchhhHHHHHHHHHhcccccEEEEeehhheecchhcccCCCCC---
Q 002139 95 ALSVVSGINSSIFAYGQTSSGKTYTMTG------ITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTDN--- 165 (960)
Q Consensus 95 V~svL~G~N~tIfAYGqTGSGKTyTM~G------Ii~rai~dLF~~I~~~~~~~f~V~vS~lEIYNE~V~DLL~~~~--- 165 (960)
|+++++|||+||||||||||||||||+| |+|+++++||+.+.. |.|++||+|||||+|+|||++..
T Consensus 81 v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gli~r~~~~lF~~~~~-----~~v~~S~~EIyne~v~DLL~~~~~~~ 155 (345)
T cd01368 81 VQDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIGG-----YSVFVSYVEIYNNYIYDLLEDSPSST 155 (345)
T ss_pred HHHHhCCCceEEEEeCCCCCCCeEEecCCCCCCchHHHHHHHHHHHHHh-----eeEEEEEEEEeCCEeEeCCCCccccc
Confidence 9999999999999999999999999975 999999999999876 99999999999999999998754
Q ss_pred ---CCceeeeCCCCCeEeccceEEEeCCHHHHHHHHHHHhhhhccccccCCCCCCCceeEEEEEEEeccccccCC---CC
Q 002139 166 ---TPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGK---EN 239 (960)
Q Consensus 166 ---~~L~i~ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~~~~~~---~~ 239 (960)
.++.+++++.++++|.|++++.|.+++|+..+|..|.++|++++|.+|..|||||+||+|+|.+......+. ..
T Consensus 156 ~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~~~~ 235 (345)
T cd01368 156 KKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQDK 235 (345)
T ss_pred cCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCcccccccCC
Confidence 379999999999999999999999999999999999999999999999999999999999998765432111 23
Q ss_pred ceeEEEEEEEEEcCCCccccccccccchhccccccccchHHHHHHHHHHhcC-----CCCcccCCCCcccccccCCCCCC
Q 002139 240 STTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKG-----RNGHINYRDSKLTRMLQPCLGGN 314 (960)
Q Consensus 240 ~~~~~SkL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~-----k~~hIPYRDSKLTrLLqdSLGGN 314 (960)
.....|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|++. +..||||||||||+||||+||||
T Consensus 236 ~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l~g~ 315 (345)
T cd01368 236 DQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFDGE 315 (345)
T ss_pred CceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhcCCC
Confidence 4567899999999999999999999999999999999999999999999863 46799999999999999999999
Q ss_pred cccceEeccCCCcccHHHHHHHHHHHHHhc
Q 002139 315 ARTAIICTLSPARSHVEQTRNTLLFACCAK 344 (960)
Q Consensus 315 skT~mI~tISPs~~~~eETlsTLrFAsrAK 344 (960)
|+|+|||||||+..+++||++||+||.+|+
T Consensus 316 s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 316 GKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred CeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999985
No 12
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=4.1e-74 Score=642.94 Aligned_cols=329 Identities=35% Similarity=0.549 Sum_probs=297.5
Q ss_pred CceEEEEEcCCCCchhhhcCCCcceEEeCCcEEEeccCCC--CCCCCCceeecCeeeCCC-------CChHHHHHhhHHH
Q 002139 23 EKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLR--EGSTFPSAYTFDRVFWGD-------CSTTQVYEDGAKE 93 (960)
Q Consensus 23 ~~I~V~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~~--~~s~~~~~F~FD~VF~~~-------atQeeVYe~~v~p 93 (960)
++|+|+|||||++..|...++...+.+.+ .++.+.++.. ........|.||+||++. ++|++||+.++.|
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~-~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p 79 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPG-KVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGRE 79 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECC-CEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHHH
Confidence 47999999999999998888877777666 5655555421 113346799999999999 9999999999999
Q ss_pred HHHHHhCCCCEEEEEecCCCCCCccccC------CCchhhHHHHHHHHHhccc--ccEEEEeehhheecchhcccCCCCC
Q 002139 94 IALSVVSGINSSIFAYGQTSSGKTYTMT------GITECTVADIFDYIHRHEE--RAFVLKFSAMEIYNEAIRDLLSTDN 165 (960)
Q Consensus 94 lV~svL~G~N~tIfAYGqTGSGKTyTM~------GIi~rai~dLF~~I~~~~~--~~f~V~vS~lEIYNE~V~DLL~~~~ 165 (960)
+|+++++|||+||||||||||||||||+ ||+|+++++||+.+....+ ..|.|++||+|||||+|+|||++..
T Consensus 80 ~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~ 159 (356)
T cd01365 80 LLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKK 159 (356)
T ss_pred HHHHHhCCCceEEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCCCc
Confidence 9999999999999999999999999997 5899999999999987654 6899999999999999999998874
Q ss_pred ---CCceeeeCCCCCeEeccceEEEeCCHHHHHHHHHHHhhhhccccccCCCCCCCceeEEEEEEEeccccccCCCCcee
Q 002139 166 ---TPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTT 242 (960)
Q Consensus 166 ---~~L~i~ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~~~~~~~~~~~ 242 (960)
..+.+++++.+|++|.|++++.|.+++++..+|..|.++|++++|.+|..|||||+||+|+|.+...... ......
T Consensus 160 ~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~-~~~~~~ 238 (356)
T cd01365 160 KNKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKE-TDLTTE 238 (356)
T ss_pred cCCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccC-CCCCce
Confidence 6899999999999999999999999999999999999999999999999999999999999987643321 124456
Q ss_pred EEEEEEEEEcCCCccccccccccchhccccccccchHHHHHHHHHHhcC-------CCCcccCCCCcccccccCCCCCCc
Q 002139 243 LSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKG-------RNGHINYRDSKLTRMLQPCLGGNA 315 (960)
Q Consensus 243 ~~SkL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~-------k~~hIPYRDSKLTrLLqdSLGGNs 315 (960)
..|+|+|||||||||..+++..|.+++|+..||+||++|++||.+|+.+ +..||||||||||+||+++||||+
T Consensus 239 ~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lgg~s 318 (356)
T cd01365 239 KVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGNS 318 (356)
T ss_pred EEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcCCCc
Confidence 7899999999999999999999999999999999999999999999864 357999999999999999999999
Q ss_pred ccceEeccCCCcccHHHHHHHHHHHHHhccccccceec
Q 002139 316 RTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVN 353 (960)
Q Consensus 316 kT~mI~tISPs~~~~eETlsTLrFAsrAK~Ikn~~~vN 353 (960)
+|+|||||||...+++||++||+||++|++|++.|++|
T Consensus 319 ~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 319 KTAMIATISPADINYEETLSTLRYADRAKKIVNVAVVN 356 (356)
T ss_pred eEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 99999999999999999999999999999999999876
No 13
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=7.1e-73 Score=627.77 Aligned_cols=322 Identities=39% Similarity=0.603 Sum_probs=294.1
Q ss_pred CceEEEEEcCCCCchhhhcCCCcceEEe-CCcEEEeccCCCCCCCCCceeecCeeeCCCCChHHHHHhhHHHHHHHHhCC
Q 002139 23 EKILVLVRLRPLSEKEITADEATDWECI-NDTTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSG 101 (960)
Q Consensus 23 ~~I~V~VRVRPl~~~E~~~~~~~~~~~~-~~~ti~~~~~~~~~s~~~~~F~FD~VF~~~atQeeVYe~~v~plV~svL~G 101 (960)
++|+|+|||||+++.|...+....+.+. +..+|.+..+.......++.|.||+||+++++|++||+.++.|+|+++++|
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEG 80 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHhCC
Confidence 5799999999999999877766666654 345666665443334567899999999999999999999999999999999
Q ss_pred CCEEEEEecCCCCCCccccCC---------CchhhHHHHHHHHHhcccccEEEEeehhheecchhcccCCCCC-CCceee
Q 002139 102 INSSIFAYGQTSSGKTYTMTG---------ITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTDN-TPLRLL 171 (960)
Q Consensus 102 ~N~tIfAYGqTGSGKTyTM~G---------Ii~rai~dLF~~I~~~~~~~f~V~vS~lEIYNE~V~DLL~~~~-~~L~i~ 171 (960)
+|+||||||||||||||||+| |+|+++++||+.+....+..|.|++||+|||||+|+|||++.. .++.++
T Consensus 81 ~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~l~i~ 160 (333)
T cd01371 81 YNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAENVQFLVRVSYLEIYNEEVRDLLGKDQKKKLELK 160 (333)
T ss_pred CceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhccCccEEEEEEEEEeeCCeeeeCCCCCCCCceeEE
Confidence 999999999999999999975 8999999999999988888999999999999999999999876 689999
Q ss_pred eCCCCCeEeccceEEEeCCHHHHHHHHHHHhhhhccccccCCCCCCCceeEEEEEEEeccccccCCCCceeEEEEEEEEE
Q 002139 172 DDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVD 251 (960)
Q Consensus 172 ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~~~~~~~~~~~~~SkL~fVD 251 (960)
+++.++++|.|++++.|.+++++..+|..|.++|+++.|.+|..|||||+||+|+|++..... .+......|+|+|||
T Consensus 161 ~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~--~~~~~~~~s~L~~VD 238 (333)
T cd01371 161 ERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGE--DGENHIRVGKLNLVD 238 (333)
T ss_pred EcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccC--CCCCcEEEEEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999998765432 123346689999999
Q ss_pred cCCCccccccccccchhccccccccchHHHHHHHHHHhcCCCCcccCCCCcccccccCCCCCCcccceEeccCCCcccHH
Q 002139 252 LAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVE 331 (960)
Q Consensus 252 LAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mI~tISPs~~~~e 331 (960)
||||||..+++..|.+++|+..||+||.+|++||.+|+.++..|||||+||||+||+++|||||+|+||+||+|...+++
T Consensus 239 LAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~~ 318 (333)
T cd01371 239 LAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNYD 318 (333)
T ss_pred CCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCccccHH
Confidence 99999999999999999999999999999999999999987779999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccc
Q 002139 332 QTRNTLLFACCAKEV 346 (960)
Q Consensus 332 ETlsTLrFAsrAK~I 346 (960)
||++||+||+|||.|
T Consensus 319 eTl~TL~fa~r~r~I 333 (333)
T cd01371 319 ETLSTLRYANRAKNI 333 (333)
T ss_pred HHHHHHHHHHHhhcC
Confidence 999999999999986
No 14
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=8.3e-73 Score=631.19 Aligned_cols=328 Identities=38% Similarity=0.560 Sum_probs=297.7
Q ss_pred CCceEEEEEcCCCCchhhhcCCCcceEEeCC-cEEEeccCCCCCCCCCceeecCeeeCCCCChHHHHHhhHHHHHHHHhC
Q 002139 22 EEKILVLVRLRPLSEKEITADEATDWECIND-TTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVS 100 (960)
Q Consensus 22 ~~~I~V~VRVRPl~~~E~~~~~~~~~~~~~~-~ti~~~~~~~~~s~~~~~F~FD~VF~~~atQeeVYe~~v~plV~svL~ 100 (960)
+.+|+|+|||||+...|...+....+.+.++ ++|.+.+.. ........|.||+||+++++|++||+.++.|+|+++++
T Consensus 1 ~~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~-~~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~ 79 (352)
T cd01364 1 ESNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGG-ADKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLM 79 (352)
T ss_pred CCCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCC-cccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 3589999999999999987777777777765 667665542 22334679999999999999999999999999999999
Q ss_pred CCCEEEEEecCCCCCCccccC-----------------CCchhhHHHHHHHHHhcccccEEEEeehhheecchhcccCCC
Q 002139 101 GINSSIFAYGQTSSGKTYTMT-----------------GITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLST 163 (960)
Q Consensus 101 G~N~tIfAYGqTGSGKTyTM~-----------------GIi~rai~dLF~~I~~~~~~~f~V~vS~lEIYNE~V~DLL~~ 163 (960)
|||+||||||||||||||||+ ||+|+++.+||+.+... ...|.|++||+|||||+|+|||++
T Consensus 80 G~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~-~~~~~v~~S~~EIy~e~v~DLL~~ 158 (352)
T cd01364 80 GYNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ-NTEYSVKVSYLELYNEELFDLLSS 158 (352)
T ss_pred CCeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc-cceeEEEEEEEEeeCCeeeeCCCC
Confidence 999999999999999999995 57899999999999876 668999999999999999999998
Q ss_pred C---CCCceeeeC--CCCCeEeccceEEEeCCHHHHHHHHHHHhhhhccccccCCCCCCCceeEEEEEEEeccccccCCC
Q 002139 164 D---NTPLRLLDD--PEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKE 238 (960)
Q Consensus 164 ~---~~~L~i~ed--~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~~~~~~~ 238 (960)
. ..+++++++ ..+|++|.|++++.|.+++++..+|..|.++|++++|.+|..|||||+||+|+|.+..... .+
T Consensus 159 ~~~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~--~~ 236 (352)
T cd01364 159 ESDLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTI--SG 236 (352)
T ss_pred ccccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCC--CC
Confidence 6 568999999 5899999999999999999999999999999999999999999999999999998754321 22
Q ss_pred CceeEEEEEEEEEcCCCccccccccccchhccccccccchHHHHHHHHHHhcCCCCcccCCCCcccccccCCCCCCcccc
Q 002139 239 NSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTA 318 (960)
Q Consensus 239 ~~~~~~SkL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPYRDSKLTrLLqdSLGGNskT~ 318 (960)
......|+|+||||||||+..+.++.+.+++|+..||+||++|++||.+|+.+. .|||||+||||+||+++|||||+|+
T Consensus 237 ~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~-~~vpyR~S~LT~lL~~~Lgg~s~t~ 315 (352)
T cd01364 237 EELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKS-PHIPYRESKLTRLLQDSLGGRTKTS 315 (352)
T ss_pred CccEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCC-CCCCCcccHHHHHHHHhcCCCceEE
Confidence 233567999999999999999999999999999999999999999999999864 6999999999999999999999999
Q ss_pred eEeccCCCcccHHHHHHHHHHHHHhccccccceecc
Q 002139 319 IICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNV 354 (960)
Q Consensus 319 mI~tISPs~~~~eETlsTLrFAsrAK~Ikn~~~vN~ 354 (960)
|||||||+..+++||++||+||++|++|+|+|.+|.
T Consensus 316 ~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~ 351 (352)
T cd01364 316 IIATISPASINLEETLSTLEYAHRAKNIKNKPEVNQ 351 (352)
T ss_pred EEEEeCCCcccHHHHHHHHHHHHHHhhccCccccCC
Confidence 999999999999999999999999999999999985
No 15
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=7.4e-73 Score=625.16 Aligned_cols=311 Identities=35% Similarity=0.513 Sum_probs=284.0
Q ss_pred CceEEEEEcCCCCchhhhcCCCcceEEeCCcEEEeccCCC--CC--CCCCceeecCeeeCCCCChHHHHHhhHHHHHHHH
Q 002139 23 EKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLR--EG--STFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSV 98 (960)
Q Consensus 23 ~~I~V~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~~--~~--s~~~~~F~FD~VF~~~atQeeVYe~~v~plV~sv 98 (960)
.+|+|+|||||+.+.|...++...+.+.++.++.+..+.. .. ......|+||+||+++++|++||+.+++|+|+++
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~ 80 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPHV 80 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCCCEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHHH
Confidence 4799999999999999887777777777766777654321 11 1125789999999999999999999999999999
Q ss_pred hCCCCEEEEEecCCCCCCccccC------CCchhhHHHHHHHHHhcccccEEEEeehhheecchhcccCCCCCCCceeee
Q 002139 99 VSGINSSIFAYGQTSSGKTYTMT------GITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLD 172 (960)
Q Consensus 99 L~G~N~tIfAYGqTGSGKTyTM~------GIi~rai~dLF~~I~~~~~~~f~V~vS~lEIYNE~V~DLL~~~~~~L~i~e 172 (960)
++|||+||||||||||||||||+ ||+|+++++||+.+.... ..|.|++||+|||||+|+|||++ .+++.+++
T Consensus 81 ~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Glipr~~~~lf~~~~~~~-~~~~v~~S~~EIy~e~v~DLL~~-~~~l~i~~ 158 (322)
T cd01367 81 FEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDIFRLLAQPN-DDLGVTVSFFEIYGGKLFDLLND-RKRLSVLE 158 (322)
T ss_pred hCCCceEEEeccCCCCCCceEecCcCCcCccHHHHHHHHHHHHhccc-cccEEEEEEEeeecCchhhhccC-ccceeEEE
Confidence 99999999999999999999998 899999999999998765 68999999999999999999987 67899999
Q ss_pred CCCCCeEeccceEEEeCCHHHHHHHHHHHhhhhccccccCCCCCCCceeEEEEEEEeccccccCCCCceeEEEEEEEEEc
Q 002139 173 DPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDL 252 (960)
Q Consensus 173 d~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~~~~~~~~~~~~~SkL~fVDL 252 (960)
++.++++|.|++++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|.|.+... ....|+|+||||
T Consensus 159 ~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~--------~~~~s~l~~vDL 230 (322)
T cd01367 159 DGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL--------NKLLGKLSFIDL 230 (322)
T ss_pred cCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC--------CeeEEEEEEeec
Confidence 999999999999999999999999999999999999999999999999999999987542 356899999999
Q ss_pred CCCccccccc-cccchhccccccccchHHHHHHHHHHhcCCCCcccCCCCcccccccCCCCCCcccceEeccCCCcccHH
Q 002139 253 AGSERASQAL-STGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVE 331 (960)
Q Consensus 253 AGSER~~kt~-s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mI~tISPs~~~~e 331 (960)
||||+...+. ..+.+++|+.+||+||++|++||.+|++++ .||||||||||+||||+|||||+|+|||||||+..+++
T Consensus 231 AGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~-~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~ 309 (322)
T cd01367 231 AGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNK-AHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCE 309 (322)
T ss_pred CCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCC-CcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHH
Confidence 9999998765 467899999999999999999999999865 69999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc
Q 002139 332 QTRNTLLFACCAK 344 (960)
Q Consensus 332 ETlsTLrFAsrAK 344 (960)
||++||+||+|+|
T Consensus 310 eTl~tL~fa~r~k 322 (322)
T cd01367 310 HTLNTLRYADRVK 322 (322)
T ss_pred HHHHHHHHHHhhC
Confidence 9999999999986
No 16
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=2.8e-72 Score=619.79 Aligned_cols=314 Identities=55% Similarity=0.794 Sum_probs=291.6
Q ss_pred ceEEEEEcCCCCchhhhcCCCcceEEeCCcEEEeccCCCCCCCCCceeecCeeeCCCCChHHHHHhhHHHHHHHHhCCCC
Q 002139 24 KILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGIN 103 (960)
Q Consensus 24 ~I~V~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~~~~s~~~~~F~FD~VF~~~atQeeVYe~~v~plV~svL~G~N 103 (960)
+|+|+||+||++..|. .++.+.|.+.++.+++...+ .....|.||+||+++++|++||+.++.|+|+++++|+|
T Consensus 1 ~V~V~vRvRP~~~~e~-~~~~~~~~~~~~~~v~~~~~-----~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n 74 (321)
T cd01374 1 KIKVSVRVRPLNPRES-DNEQVAWSIDNDNTISLEES-----TPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYN 74 (321)
T ss_pred CeEEEEEcCcCCcccc-cCCcceEEECCCCEEEEcCC-----CCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCc
Confidence 5999999999999987 35677888888877776543 33579999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCCccccC------CCchhhHHHHHHHHHhcccccEEEEeehhheecchhcccCCCCCCCceeeeCCCCC
Q 002139 104 SSIFAYGQTSSGKTYTMT------GITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPEKG 177 (960)
Q Consensus 104 ~tIfAYGqTGSGKTyTM~------GIi~rai~dLF~~I~~~~~~~f~V~vS~lEIYNE~V~DLL~~~~~~L~i~ed~~~g 177 (960)
+||||||||||||||||+ ||+|+++++||..+....+..|.|++||+|||||+|+|||++...++++++++.+|
T Consensus 75 ~~i~ayG~tgSGKT~T~~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~l~i~~~~~~~ 154 (321)
T cd01374 75 GTIFAYGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQDTPDREFLLRVSYLEIYNEKIKDLLSPSPQELRIREDPNKG 154 (321)
T ss_pred eeEEeecCCCCCCceeccCCCCCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEEcCEeEEccCCCCCCceEEECCCCC
Confidence 999999999999999998 79999999999999988888999999999999999999999998999999999999
Q ss_pred eEeccceEEEeCCHHHHHHHHHHHhhhhccccccCCCCCCCceeEEEEEEEeccccccCCCCceeEEEEEEEEEcCCCcc
Q 002139 178 VVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSER 257 (960)
Q Consensus 178 v~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~~~~~~~~~~~~~SkL~fVDLAGSER 257 (960)
++|.|++++.|.+++++..+|..|.++|++++|.+|..|||||+||+|+|.+..... ........|+|+||||||||+
T Consensus 155 ~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~--~~~~~~~~s~l~~vDLAGsE~ 232 (321)
T cd01374 155 VVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGD--SESGTVRVSTLNLIDLAGSER 232 (321)
T ss_pred EEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCC--CCCCcEEEEEEEEEECCCCCc
Confidence 999999999999999999999999999999999999999999999999998865421 123456789999999999999
Q ss_pred ccccccccchhccccccccchHHHHHHHHHHhcCC-CCcccCCCCcccccccCCCCCCcccceEeccCCCcccHHHHHHH
Q 002139 258 ASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGR-NGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNT 336 (960)
Q Consensus 258 ~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k-~~hIPYRDSKLTrLLqdSLGGNskT~mI~tISPs~~~~eETlsT 336 (960)
..+.+ .+.+++|+.+||+||.+|++||.+|+.++ ..||||||||||+||+++||||++|+|||||||...+++||++|
T Consensus 233 ~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~T 311 (321)
T cd01374 233 ASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETLNT 311 (321)
T ss_pred cccCC-CCccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHH
Confidence 99988 89999999999999999999999999875 57999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccc
Q 002139 337 LLFACCAKEV 346 (960)
Q Consensus 337 LrFAsrAK~I 346 (960)
|+||++|++|
T Consensus 312 L~~a~r~~~i 321 (321)
T cd01374 312 LKFASRAKKV 321 (321)
T ss_pred HHHHHHHhcC
Confidence 9999999976
No 17
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=1.1e-71 Score=615.73 Aligned_cols=314 Identities=39% Similarity=0.557 Sum_probs=291.8
Q ss_pred CceEEEEEcCCCCchhhhcCCCcceEEeCCcEEEeccCCCCCCCCCceeecCeeeCCCCChHHHHHhhHHHHHHHHhCCC
Q 002139 23 EKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGI 102 (960)
Q Consensus 23 ~~I~V~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~~~~s~~~~~F~FD~VF~~~atQeeVYe~~v~plV~svL~G~ 102 (960)
++|+|+|||||+++.|..+++...+.+.++.+|.+... ...+.|.||+||+++++|++||+.+++|+|+++++|+
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~v~~~~~-----~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~ 76 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGEDTVSIAGS-----DDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGY 76 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCCCEEEecCC-----CCceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCc
Confidence 58999999999999998777788888888878877543 2356999999999999999999999999999999999
Q ss_pred CEEEEEecCCCCCCccccC---------CCchhhHHHHHHHHHhcc-cccEEEEeehhheecchhcccCCCCCCCceeee
Q 002139 103 NSSIFAYGQTSSGKTYTMT---------GITECTVADIFDYIHRHE-ERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLD 172 (960)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~---------GIi~rai~dLF~~I~~~~-~~~f~V~vS~lEIYNE~V~DLL~~~~~~L~i~e 172 (960)
|+||||||||||||||||+ ||+|+++++||+.+.... ...|.|++||+|||||+|+|||++....+.+++
T Consensus 77 n~~i~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~ 156 (325)
T cd01369 77 NGTIFAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVSKDNLQVHE 156 (325)
T ss_pred cceEEEeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCccCCceEEE
Confidence 9999999999999999995 589999999999997654 457999999999999999999999888999999
Q ss_pred CCCCCeEeccceEEEeCCHHHHHHHHHHHhhhhccccccCCCCCCCceeEEEEEEEeccccccCCCCceeEEEEEEEEEc
Q 002139 173 DPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDL 252 (960)
Q Consensus 173 d~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~~~~~~~~~~~~~SkL~fVDL 252 (960)
++.+|++|+|++++.|.|++++..+|..|.++|++++|.+|..|||||+||+|+|.+... .......|+|+||||
T Consensus 157 ~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~-----~~~~~~~s~l~~VDL 231 (325)
T cd01369 157 DKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENV-----ETGSKKRGKLFLVDL 231 (325)
T ss_pred cCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEec-----CCCCEEEEEEEEEEC
Confidence 999999999999999999999999999999999999999999999999999999987542 223457899999999
Q ss_pred CCCccccccccccchhccccccccchHHHHHHHHHHhcCCCCcccCCCCcccccccCCCCCCcccceEeccCCCcccHHH
Q 002139 253 AGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQ 332 (960)
Q Consensus 253 AGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mI~tISPs~~~~eE 332 (960)
||||+..++++.|.+++|+..||+||.+|++||.+|+.++..||||||||||+||+++|||||+|+||+||||+..+++|
T Consensus 232 AGsE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~e 311 (325)
T cd01369 232 AGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESE 311 (325)
T ss_pred CCCCcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHH
Confidence 99999999999999999999999999999999999999876899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccc
Q 002139 333 TRNTLLFACCAKEV 346 (960)
Q Consensus 333 TlsTLrFAsrAK~I 346 (960)
|++||+||+|||+|
T Consensus 312 Tl~TL~~a~r~~~i 325 (325)
T cd01369 312 TLSTLRFGARAKTI 325 (325)
T ss_pred HHHHHHHHHHhhcC
Confidence 99999999999986
No 18
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=3.8e-71 Score=610.68 Aligned_cols=308 Identities=33% Similarity=0.531 Sum_probs=279.7
Q ss_pred ceEEEEEcCCCCchhhhcCCCcceEEeCC-----cEEEeccCCCCCCCCCceeecCeeeCCCCChHHHHHhhHHHHHHHH
Q 002139 24 KILVLVRLRPLSEKEITADEATDWECIND-----TTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSV 98 (960)
Q Consensus 24 ~I~V~VRVRPl~~~E~~~~~~~~~~~~~~-----~ti~~~~~~~~~s~~~~~F~FD~VF~~~atQeeVYe~~v~plV~sv 98 (960)
+|+|+|||||+.+.|. +....+...+. ..+.+..+. ....++.|.||+||+++++|++||+.++.|+|+.+
T Consensus 1 ~i~V~vRvRP~~~~e~--~~~~~v~~~~~~~~~~~~v~~~~~~--~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~ 76 (319)
T cd01376 1 NVRVVVRVRPFLDCEE--DSSSCVRGIDSDQGQAKSVEIENPR--NRGETKKYQFDAFYGTECTQEDIFSREVKPIVPHL 76 (319)
T ss_pred CcEEEEEeCcCCcccc--CCCceEEEeCCCCCcceEEEEeCCC--CCCCccEEecCeEECCCCCHHHHHHHHHHHHHHHH
Confidence 5899999999999883 33444444443 355554432 22346799999999999999999999999999999
Q ss_pred hCCCCEEEEEecCCCCCCccccC------CCchhhHHHHHHHHHhcccccEEEEeehhheecchhcccCCCCCCCceeee
Q 002139 99 VSGINSSIFAYGQTSSGKTYTMT------GITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLD 172 (960)
Q Consensus 99 L~G~N~tIfAYGqTGSGKTyTM~------GIi~rai~dLF~~I~~~~~~~f~V~vS~lEIYNE~V~DLL~~~~~~L~i~e 172 (960)
++|||+||||||||||||||||+ ||+|+++++||+.++... ..|.|++||+|||||.|+|||++....+.+++
T Consensus 77 ~~G~n~~i~ayG~tgSGKTyTm~G~~~~~Glipr~~~~Lf~~~~~~~-~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~ 155 (319)
T cd01376 77 LSGQNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDLLRMGRKQA-WTGAFSMSYYEIYNEKVYDLLEPAKKELPIRE 155 (319)
T ss_pred hCCCceEEEEECCCCCCCcEEEeCCcCccchHHHHHHHHHHHHhhcc-ccceEEEEEEEEECCEeeEccCCCCCCceEEE
Confidence 99999999999999999999996 699999999999887654 67999999999999999999999888999999
Q ss_pred CCCCCeEeccceEEEeCCHHHHHHHHHHHhhhhccccccCCCCCCCceeEEEEEEEeccccccCCCCceeEEEEEEEEEc
Q 002139 173 DPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDL 252 (960)
Q Consensus 173 d~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~~~~~~~~~~~~~SkL~fVDL 252 (960)
++.++++|.|++++.|.+++++..++..|.++|.+++|.+|..|||||+||+|.|.+.... ....|+|+||||
T Consensus 156 ~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~-------~~~~s~l~~VDL 228 (319)
T cd01376 156 DKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPASN-------IQLEGKLNLIDL 228 (319)
T ss_pred cCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECCC-------ceEEEEEEEEEC
Confidence 9999999999999999999999999999999999999999999999999999999876321 257899999999
Q ss_pred CCCccccccccccchhccccccccchHHHHHHHHHHhcCCCCcccCCCCcccccccCCCCCCcccceEeccCCCcccHHH
Q 002139 253 AGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQ 332 (960)
Q Consensus 253 AGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mI~tISPs~~~~eE 332 (960)
||||+..+++..|.+++|+.+||+||++|++||.+|+.+. .||||||||||+||+|+|||||+|+|||||||...+++|
T Consensus 229 AGsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~-~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~e 307 (319)
T cd01376 229 AGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGL-PRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQD 307 (319)
T ss_pred CCCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhcCC-CcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHH
Confidence 9999999999999999999999999999999999999864 699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 002139 333 TRNTLLFACCAK 344 (960)
Q Consensus 333 TlsTLrFAsrAK 344 (960)
|++||+||+|||
T Consensus 308 Tl~TL~fa~r~~ 319 (319)
T cd01376 308 TLSTLNFASRSK 319 (319)
T ss_pred HHHHHHHHHhhC
Confidence 999999999986
No 19
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=3.2e-71 Score=615.48 Aligned_cols=316 Identities=37% Similarity=0.576 Sum_probs=286.6
Q ss_pred ceEEEEEcCCCCchhhhcCCCcceEEeCC-cEEEeccCCCCCCCCCceeecCeeeCCCCChHHHHHhhHHHHHHHHhCCC
Q 002139 24 KILVLVRLRPLSEKEITADEATDWECIND-TTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGI 102 (960)
Q Consensus 24 ~I~V~VRVRPl~~~E~~~~~~~~~~~~~~-~ti~~~~~~~~~s~~~~~F~FD~VF~~~atQeeVYe~~v~plV~svL~G~ 102 (960)
+|+|+||+||+.+.|...+....+.+... ..+.... ++.|.||+||+++++|++||+.+++|+|+++++||
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~--------~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~ 73 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGT--------DKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGY 73 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEecC--------CcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 69999999999999986666666655443 3444322 46899999999999999999999999999999999
Q ss_pred CEEEEEecCCCCCCccccC------------CCchhhHHHHHHHHHhccc-ccEEEEeehhheecchhcccCCCC---CC
Q 002139 103 NSSIFAYGQTSSGKTYTMT------------GITECTVADIFDYIHRHEE-RAFVLKFSAMEIYNEAIRDLLSTD---NT 166 (960)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~------------GIi~rai~dLF~~I~~~~~-~~f~V~vS~lEIYNE~V~DLL~~~---~~ 166 (960)
|+||||||||||||||||+ ||+|+++++||+.+....+ ..|.|.+||+|||||+|+|||++. ..
T Consensus 74 n~~i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~ 153 (341)
T cd01372 74 NATVLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPSTSEKS 153 (341)
T ss_pred ccceeeecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcccCCC
Confidence 9999999999999999995 4889999999999987765 789999999999999999999886 47
Q ss_pred CceeeeCCCCCeEeccceEEEeCCHHHHHHHHHHHhhhhccccccCCCCCCCceeEEEEEEEecccccc-----CCCCce
Q 002139 167 PLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFL-----GKENST 241 (960)
Q Consensus 167 ~L~i~ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~~~~-----~~~~~~ 241 (960)
++.+++++.++++|.|++++.|.++++++.+|..|.++|..++|.+|..|||||+||+|.|.+...... ......
T Consensus 154 ~l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~ 233 (341)
T cd01372 154 PIQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNS 233 (341)
T ss_pred CceEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCCc
Confidence 899999999999999999999999999999999999999999999999999999999999988654311 113345
Q ss_pred eEEEEEEEEEcCCCccccccccccchhccccccccchHHHHHHHHHHhcCCC--CcccCCCCcccccccCCCCCCcccce
Q 002139 242 TLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRN--GHINYRDSKLTRMLQPCLGGNARTAI 319 (960)
Q Consensus 242 ~~~SkL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~--~hIPYRDSKLTrLLqdSLGGNskT~m 319 (960)
...|+|+||||||||+..++++.|.+++|+..||+||++|++||.+|+.+.. .|||||+||||+||+++||||++|+|
T Consensus 234 ~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t~~ 313 (341)
T cd01372 234 TLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHTLM 313 (341)
T ss_pred eeeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCCceEEE
Confidence 6889999999999999999999999999999999999999999999997653 79999999999999999999999999
Q ss_pred EeccCCCcccHHHHHHHHHHHHHhcccc
Q 002139 320 ICTLSPARSHVEQTRNTLLFACCAKEVT 347 (960)
Q Consensus 320 I~tISPs~~~~eETlsTLrFAsrAK~Ik 347 (960)
|+||||...+++||++||+||++||+|+
T Consensus 314 I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 314 IACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred EEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999986
No 20
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=3.1e-70 Score=607.08 Aligned_cols=312 Identities=35% Similarity=0.498 Sum_probs=277.5
Q ss_pred ceEEEEEcCCCCchhhhcCCCcceEEeC-CcEEEeccCCC------CCCCCCceeecCeeeCCCCChHHHHHhhHHHHHH
Q 002139 24 KILVLVRLRPLSEKEITADEATDWECIN-DTTILYRNTLR------EGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIAL 96 (960)
Q Consensus 24 ~I~V~VRVRPl~~~E~~~~~~~~~~~~~-~~ti~~~~~~~------~~s~~~~~F~FD~VF~~~atQeeVYe~~v~plV~ 96 (960)
+|+|+||+||+...+.. .+.+.. +.++.+..+.. ........|.||+||++ ++|++||+.++.|+|+
T Consensus 1 ~i~V~vRvRP~~~~~~~-----~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~ 74 (334)
T cd01375 1 TIQVFVRVRPTPTKQGS-----SIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVD 74 (334)
T ss_pred CeEEEEECCCCCCCCCc-----cEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHH
Confidence 58999999999874421 223333 23333322111 11223468999999999 9999999999999999
Q ss_pred HHhCCCCEEEEEecCCCCCCccccC---------CCchhhHHHHHHHHHhcccccEEEEeehhheecchhcccCCCCC--
Q 002139 97 SVVSGINSSIFAYGQTSSGKTYTMT---------GITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTDN-- 165 (960)
Q Consensus 97 svL~G~N~tIfAYGqTGSGKTyTM~---------GIi~rai~dLF~~I~~~~~~~f~V~vS~lEIYNE~V~DLL~~~~-- 165 (960)
++++|+|+||||||||||||||||+ ||+|+++.+||+.++...+..|.|++||+|||||+|+|||++..
T Consensus 75 ~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~ 154 (334)
T cd01375 75 SALDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMRATKTYTVHVSYLEIYNEQLYDLLGDTPEA 154 (334)
T ss_pred HHhCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhccCcceEEEEEEEEEECCEeecCCCCCccc
Confidence 9999999999999999999999996 58999999999999998888999999999999999999999874
Q ss_pred ----CCceeeeCCCCCeEeccceEEEeCCHHHHHHHHHHHhhhhccccccCCCCCCCceeEEEEEEEeccccccCCCCce
Q 002139 166 ----TPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENST 241 (960)
Q Consensus 166 ----~~L~i~ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~~~~~~~~~~ 241 (960)
+.+.+++++.++++|.|++++.|.++++++.+|..|.++|.+++|.+|..|||||+||+|+|.+.... .....
T Consensus 155 ~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~---~~~~~ 231 (334)
T cd01375 155 LESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSRE---AGSEV 231 (334)
T ss_pred cccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecC---CCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999986433 23345
Q ss_pred eEEEEEEEEEcCCCccccccccccchhccccccccchHHHHHHHHHHhcCCCCcccCCCCcccccccCCCCCCcccceEe
Q 002139 242 TLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIIC 321 (960)
Q Consensus 242 ~~~SkL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mI~ 321 (960)
...++|+||||||||+..++++.+.+++|+.+||+||++|++||.+|++++..||||||||||+||+|+|||||+|+|||
T Consensus 232 ~~~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~ 311 (334)
T cd01375 232 VRLSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLA 311 (334)
T ss_pred eEEEEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEE
Confidence 67899999999999999999999999999999999999999999999988767999999999999999999999999999
Q ss_pred ccCCCcccHHHHHHHHHHHHHhc
Q 002139 322 TLSPARSHVEQTRNTLLFACCAK 344 (960)
Q Consensus 322 tISPs~~~~eETlsTLrFAsrAK 344 (960)
||||+..+++||++||+||+|++
T Consensus 312 ~vsp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 312 TIWVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred EeCCchhhHHHHHHHHHHHHhcC
Confidence 99999999999999999999985
No 21
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=9.3e-69 Score=593.12 Aligned_cols=314 Identities=36% Similarity=0.538 Sum_probs=286.6
Q ss_pred CceEEEEEcCCCCchhhhcCCCcceEEeCC--cEEEeccCCCCCCCCCceeecCeeeCCCCChHHHHHhhHHHHHHHHhC
Q 002139 23 EKILVLVRLRPLSEKEITADEATDWECIND--TTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVS 100 (960)
Q Consensus 23 ~~I~V~VRVRPl~~~E~~~~~~~~~~~~~~--~ti~~~~~~~~~s~~~~~F~FD~VF~~~atQeeVYe~~v~plV~svL~ 100 (960)
++|+|+|||||+.+.|. ......+.+.+. .++.+... ......|.||+||+++++|++||+. +.|+|+++++
T Consensus 2 ~~i~V~vRirP~~~~e~-~~~~~~~~~~~~~~~~i~~~~~----~~~~~~f~fD~vf~~~~~q~~v~~~-v~p~v~~~~~ 75 (329)
T cd01366 2 GNIRVFCRVRPLLPSES-TEYSSVISFPDEDGGTIELSKG----TGKKKSFSFDRVFDPDASQEDVFEE-VSPLVQSALD 75 (329)
T ss_pred CCEEEEEEcCcCCcccc-CCCccEEEEcCCCceEEEEeCC----CCCceEEecCEEECCCCCHHHHHHH-HHHHHHHHhC
Confidence 68999999999999886 344455666655 66666443 2335789999999999999999998 6999999999
Q ss_pred CCCEEEEEecCCCCCCccccCC------CchhhHHHHHHHHHhcc--cccEEEEeehhheecchhcccCCCC---CCCce
Q 002139 101 GINSSIFAYGQTSSGKTYTMTG------ITECTVADIFDYIHRHE--ERAFVLKFSAMEIYNEAIRDLLSTD---NTPLR 169 (960)
Q Consensus 101 G~N~tIfAYGqTGSGKTyTM~G------Ii~rai~dLF~~I~~~~--~~~f~V~vS~lEIYNE~V~DLL~~~---~~~L~ 169 (960)
|+|+||||||+|||||||||+| |+|+++++||+.+.... ...|.|.+||+|||||+|+|||++. ..++.
T Consensus 76 G~~~~i~ayG~tgSGKT~tl~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~ 155 (329)
T cd01366 76 GYNVCIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKKKLE 155 (329)
T ss_pred CCceEEEEeCCCCCCCcEEecCCCCCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcCCCCceE
Confidence 9999999999999999999965 89999999999998765 4789999999999999999999987 67899
Q ss_pred eeeCCCCCeEeccceEEEeCCHHHHHHHHHHHhhhhccccccCCCCCCCceeEEEEEEEeccccccCCCCceeEEEEEEE
Q 002139 170 LLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNF 249 (960)
Q Consensus 170 i~ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~~~~~~~~~~~~~SkL~f 249 (960)
+++++.+++++.|++++.|.+++++..+|..|.++|.++.|.+|..|||||+||+|+|.+.... ......|+|+|
T Consensus 156 i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~-----~~~~~~s~l~~ 230 (329)
T cd01366 156 IKHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQ-----TGEQTRGKLNL 230 (329)
T ss_pred EEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCC-----CCcEEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999875432 33467899999
Q ss_pred EEcCCCccccccccccchhccccccccchHHHHHHHHHHhcCCCCcccCCCCcccccccCCCCCCcccceEeccCCCccc
Q 002139 250 VDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSH 329 (960)
Q Consensus 250 VDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mI~tISPs~~~ 329 (960)
|||||+|+..+.++.+.+++|+..||+||.+|++||.+|+.+ ..|||||+||||+||+++||||++|+|||||||...+
T Consensus 231 VDLaGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~-~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~ 309 (329)
T cd01366 231 VDLAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSK-DSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESN 309 (329)
T ss_pred EECCCCcccccccccchhhHhHhhhhhHHHHHHHHHHHHhcC-CCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhh
Confidence 999999999999999999999999999999999999999986 5699999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccccc
Q 002139 330 VEQTRNTLLFACCAKEVTT 348 (960)
Q Consensus 330 ~eETlsTLrFAsrAK~Ikn 348 (960)
++||++||+||++|++|++
T Consensus 310 ~~etl~tL~~a~~~~~i~~ 328 (329)
T cd01366 310 LSETLCSLRFASRVRSVEL 328 (329)
T ss_pred HHHHHHHHHHHHHhhcccC
Confidence 9999999999999999986
No 22
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=3e-68 Score=589.79 Aligned_cols=325 Identities=41% Similarity=0.617 Sum_probs=298.9
Q ss_pred ceEEEEEcCCCCchhhhcCCCcceEEeCCc--EEEeccCCCCCCCCCceeecCeeeCCCCChHHHHHhhHHHHHHHHhCC
Q 002139 24 KILVLVRLRPLSEKEITADEATDWECINDT--TILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSG 101 (960)
Q Consensus 24 ~I~V~VRVRPl~~~E~~~~~~~~~~~~~~~--ti~~~~~~~~~s~~~~~F~FD~VF~~~atQeeVYe~~v~plV~svL~G 101 (960)
+|+|+|||||+...|...+....|.+.+.. +|.+... ........|.||+||+++++|++||+.++.|+|+.+++|
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G 78 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSP--KNRKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEG 78 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCC--CCCCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcC
Confidence 589999999999999887778888776653 5555442 233456899999999999999999999999999999999
Q ss_pred CCEEEEEecCCCCCCccccC------CCchhhHHHHHHHHHhcc-cccEEEEeehhheecchhcccCCCCCCCceeeeCC
Q 002139 102 INSSIFAYGQTSSGKTYTMT------GITECTVADIFDYIHRHE-ERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDP 174 (960)
Q Consensus 102 ~N~tIfAYGqTGSGKTyTM~------GIi~rai~dLF~~I~~~~-~~~f~V~vS~lEIYNE~V~DLL~~~~~~L~i~ed~ 174 (960)
+|+||||||+|||||||||+ |++|+++++||+.+.... ...|.|++||+|||+|.|+|||++...++.+++++
T Consensus 79 ~~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~~l~i~~~~ 158 (335)
T smart00129 79 YNATIFAYGQTGSGKTYTMSGTPDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPSPKKLEIREDK 158 (335)
T ss_pred CceeEEEeCCCCCCCceEecCCCCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCCCCCcEEEECC
Confidence 99999999999999999998 799999999999997655 56899999999999999999999999999999999
Q ss_pred CCCeEeccceEEEeCCHHHHHHHHHHHhhhhccccccCCCCCCCceeEEEEEEEeccccccCCCCceeEEEEEEEEEcCC
Q 002139 175 EKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAG 254 (960)
Q Consensus 175 ~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~~~~~~~~~~~~~SkL~fVDLAG 254 (960)
.+++++.|++++.|.+++++..+|..|.++|.+++|.+|..|||||+||+|+|.+.... ........++|+||||||
T Consensus 159 ~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~---~~~~~~~~s~l~~VDLaG 235 (335)
T smart00129 159 KGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKN---SSSGSGKASKLNLVDLAG 235 (335)
T ss_pred CCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecC---CCCCCEEEEEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999865322 334457889999999999
Q ss_pred CccccccccccchhccccccccchHHHHHHHHHHhcC-CCCcccCCCCcccccccCCCCCCcccceEeccCCCcccHHHH
Q 002139 255 SERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKG-RNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQT 333 (960)
Q Consensus 255 SER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~-k~~hIPYRDSKLTrLLqdSLGGNskT~mI~tISPs~~~~eET 333 (960)
+|+..+.++.|.+++|+..||+||.+|++||.+|+++ +..|||||+|+||+||+++|||+++|+|||||||...+++||
T Consensus 236 se~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eT 315 (335)
T smart00129 236 SERASKTGAEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNLEET 315 (335)
T ss_pred CCccccccChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccchHHH
Confidence 9999999999999999999999999999999999985 567999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccccceec
Q 002139 334 RNTLLFACCAKEVTTKAQVN 353 (960)
Q Consensus 334 lsTLrFAsrAK~Ikn~~~vN 353 (960)
++||+||+++++|+|+|++|
T Consensus 316 l~tL~~a~~~~~i~~~p~~~ 335 (335)
T smart00129 316 LSTLRFASRAKEIKNKAIVN 335 (335)
T ss_pred HHHHHHHHHHhhcccCCCcC
Confidence 99999999999999999875
No 23
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=2e-68 Score=632.08 Aligned_cols=324 Identities=35% Similarity=0.508 Sum_probs=288.5
Q ss_pred CCceEEEEEcCCCCchhhhcCCCcceEEeCCcEEEeccCCCCCCCCCceeecCeeeCCCCChHHHHHhhHHHHHHHHhCC
Q 002139 22 EEKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSG 101 (960)
Q Consensus 22 ~~~I~V~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~~~~s~~~~~F~FD~VF~~~atQeeVYe~~v~plV~svL~G 101 (960)
.++|+|+|||||+.+.|............+...+.+..+.......+..|.||+||+|.++|++||.+ +.|+|.++++|
T Consensus 313 kGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~e-~~~lv~S~lDG 391 (670)
T KOG0239|consen 313 KGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFEE-VSPLVQSALDG 391 (670)
T ss_pred hcCceEEEEecCCCccccccccccccccCCcceeEeecCCCCCCCccccceeeeecCCcccHHHHHHH-HHHHHHHHhcC
Confidence 57999999999999988765333332222223355555444444444579999999999999999998 99999999999
Q ss_pred CCEEEEEecCCCCCCccccCC-------CchhhHHHHHHHHHhcc-cccEEEEeehhheecchhcccCCCCC--CCceee
Q 002139 102 INSSIFAYGQTSSGKTYTMTG-------ITECTVADIFDYIHRHE-ERAFVLKFSAMEIYNEAIRDLLSTDN--TPLRLL 171 (960)
Q Consensus 102 ~N~tIfAYGqTGSGKTyTM~G-------Ii~rai~dLF~~I~~~~-~~~f~V~vS~lEIYNE~V~DLL~~~~--~~L~i~ 171 (960)
||+||||||||||||||||.| |+|+++.+||..+.... ...|.+.++|+|||||.|+|||++.. ..+.|+
T Consensus 392 YnVCIFAYGQTGSGKTyTM~G~~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~~~~k~~I~ 471 (670)
T KOG0239|consen 392 YNVCIFAYGQTGSGKTYTMSGPTPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDESYVGKLEIV 471 (670)
T ss_pred cceeEEEecccCCCccccccCCCcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhccccccccceeEE
Confidence 999999999999999999976 89999999999998654 57899999999999999999998874 689999
Q ss_pred eCCCCCeEeccceEEEeCCHHHHHHHHHHHhhhhccccccCCCCCCCceeEEEEEEEeccccccCCCCceeEEEEEEEEE
Q 002139 172 DDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVD 251 (960)
Q Consensus 172 ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~~~~~~~~~~~~~SkL~fVD 251 (960)
++++++++|.+++.+.|.+.+++..++..|..+|++++|.+|.+|||||+||+|+|.... ........+.|+|||
T Consensus 472 ~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~-----~~t~~~~~g~l~LVD 546 (670)
T KOG0239|consen 472 DDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGIN-----ELTGIRVTGVLNLVD 546 (670)
T ss_pred EcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEeccc-----cCcccccccceeEee
Confidence 999999999999999999999999999999999999999999999999999999997652 234456789999999
Q ss_pred cCCCccccccccccchhccccccccchHHHHHHHHHHhcCCCCcccCCCCcccccccCCCCCCcccceEeccCCCcccHH
Q 002139 252 LAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVE 331 (960)
Q Consensus 252 LAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mI~tISPs~~~~e 331 (960)
||||||++++++.|+|++|+.+||+||++||.||.||+. +..||||||||||+|||++|||++||+|+++|||...++.
T Consensus 547 LAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~-k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~ 625 (670)
T KOG0239|consen 547 LAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALAS-KRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALF 625 (670)
T ss_pred cccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhh-cCCCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHh
Confidence 999999999999999999999999999999999999998 5669999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccccee
Q 002139 332 QTRNTLLFACCAKEVTTKAQV 352 (960)
Q Consensus 332 ETlsTLrFAsrAK~Ikn~~~v 352 (960)
||+++|+||.|++.+...+-.
T Consensus 626 Etl~sL~FA~rv~~~~lG~a~ 646 (670)
T KOG0239|consen 626 ETLCSLRFATRVRSVELGSAR 646 (670)
T ss_pred hhhhccchHHHhhceeccccc
Confidence 999999999999998876554
No 24
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=7.1e-67 Score=576.59 Aligned_cols=317 Identities=41% Similarity=0.611 Sum_probs=288.9
Q ss_pred ceEEEEEcCCCCchhhhcCCCcceEEeCCcEEEeccCCCCCCCCCceeecCeeeCCCCChHHHHHhhHHHHHHHHhCCCC
Q 002139 24 KILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGIN 103 (960)
Q Consensus 24 ~I~V~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~~~~s~~~~~F~FD~VF~~~atQeeVYe~~v~plV~svL~G~N 103 (960)
+|+|+|||||+...| ..+....|.+.++++|.+..+.......+..|.||+||+++++|++||+.++.|+|+++++|+|
T Consensus 1 ~i~V~vRvrP~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~ 79 (328)
T cd00106 1 NIRVVVRIRPLNGRE-SKSEESCITVDDNKTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYN 79 (328)
T ss_pred CeEEEEEcCCCCccc-ccCCCcEEEECCCCEEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCc
Confidence 589999999999877 3345566666665788876653323445689999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCCccccCC------CchhhHHHHHHHHHhcc--cccEEEEeehhheecchhcccCCCC--CCCceeeeC
Q 002139 104 SSIFAYGQTSSGKTYTMTG------ITECTVADIFDYIHRHE--ERAFVLKFSAMEIYNEAIRDLLSTD--NTPLRLLDD 173 (960)
Q Consensus 104 ~tIfAYGqTGSGKTyTM~G------Ii~rai~dLF~~I~~~~--~~~f~V~vS~lEIYNE~V~DLL~~~--~~~L~i~ed 173 (960)
+||||||+|||||||||+| ++|+++++||+.+.... ...|.|.+||+|||+|+|+|||++. ..++.++++
T Consensus 80 ~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~l~i~~~ 159 (328)
T cd00106 80 GTIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLSLRED 159 (328)
T ss_pred eeEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCCCcEEEEc
Confidence 9999999999999999987 99999999999999876 5789999999999999999999998 889999999
Q ss_pred CCCCeEeccceEEEeCCHHHHHHHHHHHhhhhccccccCCCCCCCceeEEEEEEEeccccccCCCCceeEEEEEEEEEcC
Q 002139 174 PEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLA 253 (960)
Q Consensus 174 ~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~~~~~~~~~~~~~SkL~fVDLA 253 (960)
+.+++++.|++++.|.+++++..+|..|.++|.++.|.+|..|||||+||+|+|.+..... .......|+|+|||||
T Consensus 160 ~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~---~~~~~~~s~l~~VDLa 236 (328)
T cd00106 160 PKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTN---DGRSIKSSKLNLVDLA 236 (328)
T ss_pred CCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCC---CCccEEEEEEEEEECC
Confidence 9999999999999999999999999999999999999999999999999999998865421 1113678999999999
Q ss_pred CCccccccccccchhccccccccchHHHHHHHHHHhcCC-CCcccCCCCcccccccCCCCCCcccceEeccCCCcccHHH
Q 002139 254 GSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGR-NGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQ 332 (960)
Q Consensus 254 GSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k-~~hIPYRDSKLTrLLqdSLGGNskT~mI~tISPs~~~~eE 332 (960)
|+|+..+.+..+.+++|+..||+||.+|++||.+|+.+. ..|||||+||||+|||++|||+++|+|||||+|...+++|
T Consensus 237 Gse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~e 316 (328)
T cd00106 237 GSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDE 316 (328)
T ss_pred CCCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHH
Confidence 999999988999999999999999999999999999876 5799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 002139 333 TRNTLLFACCAK 344 (960)
Q Consensus 333 TlsTLrFAsrAK 344 (960)
|++||+||+|||
T Consensus 317 Tl~tL~~a~r~~ 328 (328)
T cd00106 317 TLSTLRFASRAK 328 (328)
T ss_pred HHHHHHHHHhcC
Confidence 999999999986
No 25
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=2.8e-67 Score=581.32 Aligned_cols=316 Identities=40% Similarity=0.604 Sum_probs=276.6
Q ss_pred EcCCCCchhhhcCCCcceEEeCCcE-EEeccCCCCCCCCCceeecCeeeCCCCChHHHHHhhHHHHHHHHhCCCCEEEEE
Q 002139 30 RLRPLSEKEITADEATDWECINDTT-ILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFA 108 (960)
Q Consensus 30 RVRPl~~~E~~~~~~~~~~~~~~~t-i~~~~~~~~~s~~~~~F~FD~VF~~~atQeeVYe~~v~plV~svL~G~N~tIfA 108 (960)
||||+++.|...+....+.+.+... ................|.||+||+++++|++||+.++.|+|+++++|+|+||||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~a 80 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFA 80 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEe
Confidence 9999999999888877777653211 111111112223357999999999999999999999999999999999999999
Q ss_pred ecCCCCCCccccCC--------CchhhHHHHHHHHHhccc---ccEEEEeehhheecchhcccCCCC----CCCceeeeC
Q 002139 109 YGQTSSGKTYTMTG--------ITECTVADIFDYIHRHEE---RAFVLKFSAMEIYNEAIRDLLSTD----NTPLRLLDD 173 (960)
Q Consensus 109 YGqTGSGKTyTM~G--------Ii~rai~dLF~~I~~~~~---~~f~V~vS~lEIYNE~V~DLL~~~----~~~L~i~ed 173 (960)
||+|||||||||+| |+|+++++||..+..... ..|.|+|||+|||||+|+|||++. ..++.++++
T Consensus 81 yG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i~~~ 160 (335)
T PF00225_consen 81 YGQTGSGKTYTMFGSNDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKIRED 160 (335)
T ss_dssp EESTTSSHHHHHTBSTSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEEEEE
T ss_pred eccccccccccccccccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCccccccccccceeec
Confidence 99999999999987 799999999999998765 489999999999999999999987 357999999
Q ss_pred CCCC-eEeccceEEEeCCHHHHHHHHHHHhhhhccccccCCCCCCCceeEEEEEEEeccccccCCCCceeEEEEEEEEEc
Q 002139 174 PEKG-VVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDL 252 (960)
Q Consensus 174 ~~~g-v~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~~~~~~~~~~~~~SkL~fVDL 252 (960)
+..| ++|.|++++.|.+++++..+|..|.++|+++.|.+|..|||||+||+|+|.+......... .....|+|+||||
T Consensus 161 ~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~-~~~~~s~l~~vDL 239 (335)
T PF00225_consen 161 SNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDE-ESVKHSRLTFVDL 239 (335)
T ss_dssp TTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEE-EEEEEEEEEEEEE
T ss_pred cccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccc-cceeecceeeeec
Confidence 9977 9999999999999999999999999999999999999999999999999998754321111 1358899999999
Q ss_pred CCCccccccccc-cchhccccccccchHHHHHHHHHHhcC-CCCcccCCCCcccccccCCCCCCcccceEeccCCCcccH
Q 002139 253 AGSERASQALST-GARLKEGCHINRSLLTLSTVIRKLSKG-RNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHV 330 (960)
Q Consensus 253 AGSER~~kt~s~-g~rlkEg~~INkSL~aLg~VI~aLs~~-k~~hIPYRDSKLTrLLqdSLGGNskT~mI~tISPs~~~~ 330 (960)
||+|+..+..+. +.+++|+..||+||.+|++||.+|+.+ ...|||||+||||+||+|+|||||+|+||+||+|...++
T Consensus 240 aGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~~ 319 (335)
T PF00225_consen 240 AGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSEDY 319 (335)
T ss_dssp EESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGGH
T ss_pred ccccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEEEcCCccccH
Confidence 999999988864 788999999999999999999999987 567999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccc
Q 002139 331 EQTRNTLLFACCAKEV 346 (960)
Q Consensus 331 eETlsTLrFAsrAK~I 346 (960)
+||++||+||.+||+|
T Consensus 320 ~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 320 EETLSTLRFASRAREI 335 (335)
T ss_dssp HHHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999999999986
No 26
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=5.7e-66 Score=579.38 Aligned_cols=326 Identities=33% Similarity=0.472 Sum_probs=289.3
Q ss_pred cCCCCCCCceEEEEEcCCCCchhhhcCCCcceEEeCCcEEEeccCCCC----CCCCCceeecCeeeCCCCChHHHHHhhH
Q 002139 16 QAPSAREEKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLRE----GSTFPSAYTFDRVFWGDCSTTQVYEDGA 91 (960)
Q Consensus 16 ~~~~~~~~~I~V~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~~~----~s~~~~~F~FD~VF~~~atQeeVYe~~v 91 (960)
.+....+++|.|+||-||++.+|....+..++.+..+..++++.+... .--..+.|.||++|+..++++.||..++
T Consensus 201 ~~~~v~ehrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa 280 (676)
T KOG0246|consen 201 MGDGVNEHRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTA 280 (676)
T ss_pred cCCCCccceEEEEeecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhh
Confidence 555677899999999999999999988888888877777777543110 0112468999999999999999999999
Q ss_pred HHHHHHHhCCCCEEEEEecCCCCCCccccC------------CCchhhHHHHHHHHHhcc--cccEEEEeehhheecchh
Q 002139 92 KEIALSVVSGINSSIFAYGQTSSGKTYTMT------------GITECTVADIFDYIHRHE--ERAFVLKFSAMEIYNEAI 157 (960)
Q Consensus 92 ~plV~svL~G~N~tIfAYGqTGSGKTyTM~------------GIi~rai~dLF~~I~~~~--~~~f~V~vS~lEIYNE~V 157 (960)
+|||..+|+|--+|+||||||||||||||- ||.-.+.+|+|..+..-. ...+.|.+||+|||+.+|
T Consensus 281 ~PlV~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKv 360 (676)
T KOG0246|consen 281 KPLVKTIFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKV 360 (676)
T ss_pred hHHHHHHHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcch
Confidence 999999999999999999999999999993 677788999999998644 457899999999999999
Q ss_pred cccCCCCCCCceeeeCCCCCeEeccceEEEeCCHHHHHHHHHHHhhhhccccccCCCCCCCceeEEEEEEEeccccccCC
Q 002139 158 RDLLSTDNTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGK 237 (960)
Q Consensus 158 ~DLL~~~~~~L~i~ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~~~~~~ 237 (960)
||||+. ++.|++++|.+..+.|.||+|..|.+.+++++||..|++.|+.+.|..|..|||||+||+|.+....
T Consensus 361 fDLL~~-k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~~------ 433 (676)
T KOG0246|consen 361 YDLLND-KKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKHG------ 433 (676)
T ss_pred hhhhcc-ccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecCC------
Confidence 999976 6789999999999999999999999999999999999999999999999999999999999996532
Q ss_pred CCceeEEEEEEEEEcCCCccccccccc-cchhccccccccchHHHHHHHHHHhcCCCCcccCCCCcccccccCCCCC-Cc
Q 002139 238 ENSTTLSASVNFVDLAGSERASQALST-GARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGG-NA 315 (960)
Q Consensus 238 ~~~~~~~SkL~fVDLAGSER~~kt~s~-g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPYRDSKLTrLLqdSLGG-Ns 315 (960)
.....|++.||||||+||...+... .++..||+.||+||+||..||+||.+++ .|+|||.||||.+|+|||-| |+
T Consensus 434 --~~k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk-~H~PFR~SKLTqVLRDSFIGenS 510 (676)
T KOG0246|consen 434 --EFKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNK-SHLPFRGSKLTQVLRDSFIGENS 510 (676)
T ss_pred --cceeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCC-CCCCchhhhHHHHHHHhhcCCCC
Confidence 2458899999999999998776554 4567799999999999999999998864 59999999999999999988 99
Q ss_pred ccceEeccCCCcccHHHHHHHHHHHHHhccccccce
Q 002139 316 RTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQ 351 (960)
Q Consensus 316 kT~mI~tISPs~~~~eETlsTLrFAsrAK~Ikn~~~ 351 (960)
+|+||+||||....++.||||||||.|.|+......
T Consensus 511 rTcMIA~ISPg~~ScEhTLNTLRYAdRVKeLsv~~~ 546 (676)
T KOG0246|consen 511 RTCMIATISPGISSCEHTLNTLRYADRVKELSVDGG 546 (676)
T ss_pred ceEEEEEeCCCcchhhhhHHHHHHHHHHHhhcCCCC
Confidence 999999999999999999999999999998765433
No 27
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.5e-62 Score=562.94 Aligned_cols=327 Identities=31% Similarity=0.502 Sum_probs=290.0
Q ss_pred CCCceEEEEEcCCCCchhhhcCCCcceEEeCCcEEEeccCC-------CCCCCCCceeecCeeeCCCCChHHHHHhhHHH
Q 002139 21 REEKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTL-------REGSTFPSAYTFDRVFWGDCSTTQVYEDGAKE 93 (960)
Q Consensus 21 ~~~~I~V~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~-------~~~s~~~~~F~FD~VF~~~atQeeVYe~~v~p 93 (960)
..+.|.|+||+||+.. ..++.+.+.+++..+|+...+. ..++...+.|.|-+||+|+++|.+||+.++.|
T Consensus 29 ~~d~v~v~~rvrP~~~---~~~~~g~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~p 105 (809)
T KOG0247|consen 29 SKDPVLVVCRVRPLSD---ASEDEGCLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTVAP 105 (809)
T ss_pred hhcchheeEeecCCCC---CccccceEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHhHH
Confidence 3468999999999986 3456677888999998876432 13444567899999999999999999999999
Q ss_pred HHHHHhCCCCEEEEEecCCCCCCccccC------CCchhhHHHHHHHHHhc-----------------------------
Q 002139 94 IALSVVSGINSSIFAYGQTSSGKTYTMT------GITECTVADIFDYIHRH----------------------------- 138 (960)
Q Consensus 94 lV~svL~G~N~tIfAYGqTGSGKTyTM~------GIi~rai~dLF~~I~~~----------------------------- 138 (960)
+|.+++.|.|..+|+||.|||||||||+ ||+||+++-||..|...
T Consensus 106 lV~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~lkr 185 (809)
T KOG0247|consen 106 LVKDLLKGQNSLLFTYGVTGSGKTYTMTGTPDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQLKR 185 (809)
T ss_pred HHHHHHcccceeEEEeeccCCCceEEeecCCCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999996 59999999999866420
Q ss_pred ------------------------------------ccccEEEEeehhheecchhcccCCCCCC-----C-ceeeeCCCC
Q 002139 139 ------------------------------------EERAFVLKFSAMEIYNEAIRDLLSTDNT-----P-LRLLDDPEK 176 (960)
Q Consensus 139 ------------------------------------~~~~f~V~vS~lEIYNE~V~DLL~~~~~-----~-L~i~ed~~~ 176 (960)
.+..|.|+|||+|||||.|||||.+.+. . ..+++|.++
T Consensus 186 ~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ll~~d~~~ 265 (809)
T KOG0247|consen 186 EAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLKLLREDTNG 265 (809)
T ss_pred hhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhhhhhhhccCC
Confidence 1124789999999999999999976532 2 567889999
Q ss_pred CeEeccceEEEeCCHHHHHHHHHHHhhhhccccccCCCCCCCceeEEEEEEEeccccccCCCCceeEEEEEEEEEcCCCc
Q 002139 177 GVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSE 256 (960)
Q Consensus 177 gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~~~~~~~~~~~~~SkL~fVDLAGSE 256 (960)
..||.|++++.|.+.+|+++||+.|.++|++++|.+|..|||||+||+|.|.+.... .+......|.|.||||||||
T Consensus 266 ~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~---~~s~~i~vSqlsLvDLAGSE 342 (809)
T KOG0247|consen 266 NMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRS---QDSNQITVSQLSLVDLAGSE 342 (809)
T ss_pred CeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccc---cccCceeEEeeeeeecccch
Confidence 999999999999999999999999999999999999999999999999999887654 24456788999999999999
Q ss_pred cccccccccchhccccccccchHHHHHHHHHHhcC----CCCcccCCCCcccccccCCCCCCcccceEeccCCCcccHHH
Q 002139 257 RASQALSTGARLKEGCHINRSLLTLSTVIRKLSKG----RNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQ 332 (960)
Q Consensus 257 R~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~----k~~hIPYRDSKLTrLLqdSLGGNskT~mI~tISPs~~~~eE 332 (960)
|..++.+.|.||+|+++||.||++||+||.+|..+ ...+|||||||||++++.+|.|+.+.+||+||+|...+|+|
T Consensus 343 Rt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~YdE 422 (809)
T KOG0247|consen 343 RTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYDE 422 (809)
T ss_pred hcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHHH
Confidence 99999999999999999999999999999999753 33589999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccccceec
Q 002139 333 TRNTLLFACCAKEVTTKAQVN 353 (960)
Q Consensus 333 TlsTLrFAsrAK~Ikn~~~vN 353 (960)
+++.|+||..|+.|.....++
T Consensus 423 nl~vlkFaeiaq~v~v~~~~~ 443 (809)
T KOG0247|consen 423 NLNVLKFAEIAQEVEVARPVI 443 (809)
T ss_pred HHHHHHHHHhcccccccCccc
Confidence 999999999999998876664
No 28
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=7.3e-65 Score=598.39 Aligned_cols=336 Identities=35% Similarity=0.525 Sum_probs=301.5
Q ss_pred cCCCCchhhhcCCCcceEEe-CCcEEEeccCCCCCCCCCceeecCeeeCCCCChHHHHHhhHHHHHHHHhCCCCEEEEEe
Q 002139 31 LRPLSEKEITADEATDWECI-NDTTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAY 109 (960)
Q Consensus 31 VRPl~~~E~~~~~~~~~~~~-~~~ti~~~~~~~~~s~~~~~F~FD~VF~~~atQeeVYe~~v~plV~svL~G~N~tIfAY 109 (960)
|||+...|...+....+.+. +...|++.. ..+|+||+||.....|.++|+.++.|+++.+++|||+|++||
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~ig~--------~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlay 72 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAIGK--------DASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAY 72 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceeecC--------CcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeee
Confidence 69999999887766554422 333444322 358999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccc----------CCCchhhHHHHHHHHHhcccccEEEEeehhheecchhcccCCCCC--CCceeeeCCCCC
Q 002139 110 GQTSSGKTYTM----------TGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTDN--TPLRLLDDPEKG 177 (960)
Q Consensus 110 GqTGSGKTyTM----------~GIi~rai~dLF~~I~~~~~~~f~V~vS~lEIYNE~V~DLL~~~~--~~L~i~ed~~~g 177 (960)
||||||||||| .|++|+++..+|..+.......|.|.|||+|||+|.|+|||.|.. .++.+++ +.++
T Consensus 73 gQtgsgkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~~e-~~g~ 151 (913)
T KOG0244|consen 73 GQTGSGKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTESFVFRITVSFVELYNEEVLDLLKPSRLKANIKLRE-PKGE 151 (913)
T ss_pred cccCCCceeecccccccccccCCcCcchHHHHHHHHHhhhccceeeeeeeeeccchhhhhhcChhhhhhceeccc-cCCc
Confidence 99999999999 289999999999999988888999999999999999999998554 3577777 7788
Q ss_pred eEeccceEEEeCCHHHHHHHHHHHhhhhccccccCCCCCCCceeEEEEEEEeccccccCCCCceeEEEEEEEEEcCCCcc
Q 002139 178 VVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSER 257 (960)
Q Consensus 178 v~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~~~~~~~~~~~~~SkL~fVDLAGSER 257 (960)
+.+.|+++..|.+..++...|..|...|++++|+||..|||||+||++.+++.... ......+++|+|||||||||
T Consensus 152 it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~----~~~s~~~sKlhlVDLAGSER 227 (913)
T KOG0244|consen 152 ITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKL----SKRSSFCSKLHLVDLAGSER 227 (913)
T ss_pred eEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHh----hccchhhhhhheeecccccc
Confidence 99999999999999999999999999999999999999999999999999875432 23346789999999999999
Q ss_pred ccccccccchhccccccccchHHHHHHHHHHhcC-CCCcccCCCCcccccccCCCCCCcccceEeccCCCcccHHHHHHH
Q 002139 258 ASQALSTGARLKEGCHINRSLLTLSTVIRKLSKG-RNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNT 336 (960)
Q Consensus 258 ~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~-k~~hIPYRDSKLTrLLqdSLGGNskT~mI~tISPs~~~~eETlsT 336 (960)
.+++++.|+|+|||.+||.+|++||+||.+|... +.+||||||||||||||++||||++|+||+||||+..+++||++|
T Consensus 228 ~kkT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnT 307 (913)
T KOG0244|consen 228 VKKTKAEGDRLKEGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNT 307 (913)
T ss_pred ccccccchhhhhhccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHH
Confidence 9999999999999999999999999999999765 457999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccccceecccCCHHHHHHHHHHHHHHHHHHhcCCC
Q 002139 337 LLFACCAKEVTTKAQVNVVMSDKALVKHLQKELARLESELRSPA 380 (960)
Q Consensus 337 LrFAsrAK~Ikn~~~vN~~~s~~~lik~Lq~Ei~~Le~eL~~~~ 380 (960)
|+||.||++|+|+|.+|.. ...+.+..|+.+|..|+.+|-...
T Consensus 308 l~ya~Rak~iknk~vvN~d-~~~~~~~~lK~ql~~l~~ell~~~ 350 (913)
T KOG0244|consen 308 LRYADRAKQIKNKPVVNQD-PKSFEMLKLKAQLEPLQVELLSKA 350 (913)
T ss_pred HHHhhHHHHhccccccccc-HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999994 345678999999999999987664
No 29
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.3e-58 Score=544.47 Aligned_cols=317 Identities=39% Similarity=0.592 Sum_probs=279.9
Q ss_pred CCCceEEEEEcCCCCchhhhcCCCcceEEeCCcEEEeccCCCCCCCCCceeecCeeeCCCCChHHHHHhhHHHHHHHHhC
Q 002139 21 REEKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVS 100 (960)
Q Consensus 21 ~~~~I~V~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~~~~s~~~~~F~FD~VF~~~atQeeVYe~~v~plV~svL~ 100 (960)
....++++++..|-...+ ..+...+...+..... ....|.||+||++.++|++||+..++|++++++.
T Consensus 20 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~------~~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~ 87 (568)
T COG5059 20 SVSDIKSTIRIIPGELGE------RLINTSKKSHVSLEKS------KEGTYAFDKVFGPSATQEDVYEETIKPLIDSLLL 87 (568)
T ss_pred eecCceEEEeecCCCcch------heeecccccccccccc------cceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHh
Confidence 345788888988843322 1122222222222111 1457999999999999999999999999999999
Q ss_pred CCCEEEEEecCCCCCCccccC------CCchhhHHHHHHHHHhcc-cccEEEEeehhheecchhcccCCCCCCCceeeeC
Q 002139 101 GINSSIFAYGQTSSGKTYTMT------GITECTVADIFDYIHRHE-ERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDD 173 (960)
Q Consensus 101 G~N~tIfAYGqTGSGKTyTM~------GIi~rai~dLF~~I~~~~-~~~f~V~vS~lEIYNE~V~DLL~~~~~~L~i~ed 173 (960)
|||+||||||||||||||||. ||+|+++.+||+.+.... +..|.|.+||+|||||+++|||.+....+.++++
T Consensus 88 g~N~TvfayGqTgsgKtyt~~G~~~~~Gii~~~l~~lf~~l~~~~~~~~~~v~is~lEiYnEk~~DLl~~~~~~~~~~~~ 167 (568)
T COG5059 88 GYNCTVFAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNEESLNIRED 167 (568)
T ss_pred cccceEEEEcccCCCceeEeecCccccchHHHHHHHHHHHHHhcccCcceeeEeehhHHHhhHHHhhccCcccccccccc
Confidence 999999999999999999995 599999999999998654 4679999999999999999999988777889999
Q ss_pred CCCCeEeccceEEEeCCHHHHHHHHHHHhhhhccccccCCCCCCCceeEEEEEEEeccccccCCCCceeEEEEEEEEEcC
Q 002139 174 PEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLA 253 (960)
Q Consensus 174 ~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~~~~~~~~~~~~~SkL~fVDLA 253 (960)
...+++|.|+++..+.++++++.+|..|..+|+++.|.+|..|||||+||++++.+..... .....++|+|||||
T Consensus 168 ~~~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~-----~~~~~~~l~lvDLa 242 (568)
T COG5059 168 SLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVS-----GTSETSKLSLVDLA 242 (568)
T ss_pred CCCceEeecceEEecCChHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCc-----cceecceEEEEeec
Confidence 9999999999999999999999999999999999999999999999999999998875432 22333789999999
Q ss_pred CCccccccccccchhccccccccchHHHHHHHHHHhc-CCCCcccCCCCcccccccCCCCCCcccceEeccCCCcccHHH
Q 002139 254 GSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSK-GRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQ 332 (960)
Q Consensus 254 GSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~-~k~~hIPYRDSKLTrLLqdSLGGNskT~mI~tISPs~~~~eE 332 (960)
|||++..++..+.|++||..||+||++||+||.+|.. ++..|||||+|||||+||++|||+++|+|||||+|...++++
T Consensus 243 gSE~~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~e 322 (568)
T COG5059 243 GSERAARTGNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEE 322 (568)
T ss_pred cccccchhhcccchhhhhhhhHhhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHH
Confidence 9999999999999999999999999999999999986 356799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccccceecc
Q 002139 333 TRNTLLFACCAKEVTTKAQVNV 354 (960)
Q Consensus 333 TlsTLrFAsrAK~Ikn~~~vN~ 354 (960)
|.+||+||.+|+.|++++..|.
T Consensus 323 t~~tL~~a~rak~I~~~~~~~~ 344 (568)
T COG5059 323 TINTLKFASRAKSIKNKIQVNS 344 (568)
T ss_pred HHHHHHHHHHHhhcCCcccccC
Confidence 9999999999999999999996
No 30
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=2.3e-46 Score=383.86 Aligned_cols=173 Identities=44% Similarity=0.654 Sum_probs=160.0
Q ss_pred HHHhhHHHHHHHHhCCCCEEEEEecCCCCCCccccC------CCchhhHHHHHHHHHhcccccEEEEeehhheecchhcc
Q 002139 86 VYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT------GITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRD 159 (960)
Q Consensus 86 VYe~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~------GIi~rai~dLF~~I~~~~~~~f~V~vS~lEIYNE~V~D 159 (960)
||+.++ |+|..+++|||+||||||||||||||||+ |++|+++++
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~~Giip~~~~~----------------------------- 57 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTVTD----------------------------- 57 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCCCCCCcchHHHHH-----------------------------
Confidence 999988 99999999999999999999999999998 688887776
Q ss_pred cCCCCCCCceeeeCCCCCeEeccceEEEeCCHHHHHHHHHHHhhhhccccccCCCCCCCceeEEEEEEEeccccccCCCC
Q 002139 160 LLSTDNTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKEN 239 (960)
Q Consensus 160 LL~~~~~~L~i~ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~~~~~~~~ 239 (960)
+++++..|.++|+++.|.+|..|||||+||+|+|.+..... ...
T Consensus 58 ----------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~~--~~~ 101 (186)
T cd01363 58 ----------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALA--SAT 101 (186)
T ss_pred ----------------------------------HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecCC--CCc
Confidence 88999999999999999999999999999999998765432 122
Q ss_pred ceeEEEEEEEEEcCCCccccccccccchhccccccccchHHHHHHHHHHhcCCCCcccCCCCcccccccCCCCCCcccce
Q 002139 240 STTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAI 319 (960)
Q Consensus 240 ~~~~~SkL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPYRDSKLTrLLqdSLGGNskT~m 319 (960)
.....++|+||||||||+..+++..+.+++|++.||+||.+|++||.+|+++ ..||||||||||+||||+|||||+|+|
T Consensus 102 ~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~-~~~vpyr~SkLT~lL~~~L~g~~~t~~ 180 (186)
T cd01363 102 EQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAER-DSHVPYRESKLTRLLQDSLGGNSRTLM 180 (186)
T ss_pred cceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcC-CCCCCCcccHHHHHHHHhcCCCCeEEE
Confidence 4567899999999999999999999999999999999999999999999985 469999999999999999999999999
Q ss_pred EeccCC
Q 002139 320 ICTLSP 325 (960)
Q Consensus 320 I~tISP 325 (960)
|+||||
T Consensus 181 i~~vsP 186 (186)
T cd01363 181 VACISP 186 (186)
T ss_pred EEEeCc
Confidence 999998
No 31
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=97.78 E-value=2e-07 Score=111.63 Aligned_cols=253 Identities=23% Similarity=0.197 Sum_probs=148.7
Q ss_pred CCCCCCceEEEEEcCCCCchhhhcCCCcceEEe----C-CcEEEeccCCCCCCCCCceeecCeeeCCCCChHHHHHhhHH
Q 002139 18 PSAREEKILVLVRLRPLSEKEITADEATDWECI----N-DTTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAK 92 (960)
Q Consensus 18 ~~~~~~~I~V~VRVRPl~~~E~~~~~~~~~~~~----~-~~ti~~~~~~~~~s~~~~~F~FD~VF~~~atQeeVYe~~v~ 92 (960)
.-++.-+++|+|+|+|.+......... .... + .+++.. +...........|.||.+|.....+..++.. ..
T Consensus 300 sLgG~~~~~~i~~Isp~~~~~~et~~t--L~~a~rak~I~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~ 375 (568)
T COG5059 300 SLGGNCNTRVICTISPSSNSFEETINT--LKFASRAKSIKNKIQV-NSSSDSSREIEEIKFDLSEDRSEIEILVFRE-QS 375 (568)
T ss_pred hcCCCccEEEEEEEcCCCCchHHHHHH--HHHHHHHhhcCCcccc-cCcCcchHHHHHHHhhhhhhhhhhhhHHHHH-HH
Confidence 334455999999999987432110000 0000 0 111111 1100111123478999999998888888876 67
Q ss_pred HHHHHHhCCCCEEEEEecCCCCCCccccC----CCchhhHHHHHHHHHhccc--ccEEEEeehhheecchhcccCCCCC-
Q 002139 93 EIALSVVSGINSSIFAYGQTSSGKTYTMT----GITECTVADIFDYIHRHEE--RAFVLKFSAMEIYNEAIRDLLSTDN- 165 (960)
Q Consensus 93 plV~svL~G~N~tIfAYGqTGSGKTyTM~----GIi~rai~dLF~~I~~~~~--~~f~V~vS~lEIYNE~V~DLL~~~~- 165 (960)
..++..++| +++||++++|+++||. ++....+...|..+..... ..+...+-++++|-....++.....
T Consensus 376 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 451 (568)
T COG5059 376 QLSQSSLSG----IFAYMQSLKKETETLKSRIDLIMKSIISGTFERKKLLKEEGWKYKSTLQFLRIEIDRLLLLREEELS 451 (568)
T ss_pred hhhhhhhhh----HHHHHhhhhhhhhcccchhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 777888888 9999999999999995 4555555666766654332 2333444556666222222221111
Q ss_pred CCce--eeeCCCCCeEeccceEEEeCCHHHHHHHHHHHhhhhccccccCCCCCCCceeEEEEEEEeccccccCCCCceeE
Q 002139 166 TPLR--LLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTL 243 (960)
Q Consensus 166 ~~L~--i~ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~~~~~~~~~~~~ 243 (960)
.+.. .....-+...+..++.. .....+..... .+...+..+.+..|..++++|.+|+........- ...
T Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-------~~~ 522 (568)
T COG5059 452 KKKTKIHKLNKLRHDLSSLLSSI-PEETSDRVESE-KASKLRSSASTKLNLRSSRSHSKFRDHLNGSNSS-------TKE 522 (568)
T ss_pred ChHHHHHHHHHHHHHHHHhhhhc-chhhhhhhhhh-hhccchhhcccchhhhhcccchhhhhcccchhhh-------hHH
Confidence 1000 00000000001111111 01111111111 4567788899999999999999998766432110 001
Q ss_pred EEEEEEEEcCCCccccccccccchhccccccccchHHHHHHHHHHh
Q 002139 244 SASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLS 289 (960)
Q Consensus 244 ~SkL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs 289 (960)
.. ++.|||||+||. -+.+-|.++++...+|++|..++.+|.++.
T Consensus 523 ~~-~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 523 LS-LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred HH-hhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 11 799999999999 888899999999999999999999998763
No 32
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=94.70 E-value=0.042 Score=65.12 Aligned_cols=83 Identities=19% Similarity=0.306 Sum_probs=60.0
Q ss_pred eeecCeeeCCCCChHHHHHhhHHHHHHHHhCCCCEEEEEecCCCCCCccccCCCchh-------------hHHHHHHHHH
Q 002139 70 AYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITEC-------------TVADIFDYIH 136 (960)
Q Consensus 70 ~F~FD~VF~~~atQeeVYe~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~GIi~r-------------ai~dLF~~I~ 136 (960)
.|..-.-|.|.-+|-+- +..+|+.+-.|.-.-+ ..|.|||||||||.-+|.. ....||..++
T Consensus 4 ~F~l~s~f~PaGDQP~A----I~~Lv~gi~~g~~~Qt-LLGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~Efk 78 (663)
T COG0556 4 PFKLHSPFKPAGDQPEA----IAELVEGIENGLKHQT-LLGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSEFK 78 (663)
T ss_pred ceEeccCCCCCCCcHHH----HHHHHHHHhcCceeeE-EeeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHHHH
Confidence 46666678888888654 4557777667765544 4599999999999754432 3567888776
Q ss_pred h-cccccEEEEeehhheecchh
Q 002139 137 R-HEERAFVLKFSAMEIYNEAI 157 (960)
Q Consensus 137 ~-~~~~~f~V~vS~lEIYNE~V 157 (960)
. .++..+...|||+..|.-..
T Consensus 79 ~fFP~NaVEYFVSYYDYYQPEA 100 (663)
T COG0556 79 EFFPENAVEYFVSYYDYYQPEA 100 (663)
T ss_pred HhCcCcceEEEeeeccccCccc
Confidence 5 46778889999999997543
No 33
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.35 E-value=0.035 Score=59.34 Aligned_cols=76 Identities=32% Similarity=0.424 Sum_probs=43.6
Q ss_pred ceeecCeeeCCCCChHHHHHhhHHHHHHHHhCCCCEEEEEecCCCCCCccccCCCchhhHHHHHHHHHhcccccEEEEee
Q 002139 69 SAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITECTVADIFDYIHRHEERAFVLKFS 148 (960)
Q Consensus 69 ~~F~FD~VF~~~atQeeVYe~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~GIi~rai~dLF~~I~~~~~~~f~V~vS 148 (960)
..|+||.-+..+ .++..|.. +..++..--..+|. +|-||++|+||||-|.+ +.+.+.+.....-.+.++
T Consensus 3 ~~~tFdnfv~g~-~N~~a~~~-~~~ia~~~~~~~~~-l~l~G~~G~GKTHLL~A--------i~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 3 PKYTFDNFVVGE-SNELAYAA-AKAIAENPGERYNP-LFLYGPSGLGKTHLLQA--------IANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp TT-SCCCS--TT-TTHHHHHH-HHHHHHSTTTSSSE-EEEEESTTSSHHHHHHH--------HHHHHHHHCTTS-EEEEE
T ss_pred CCCccccCCcCC-cHHHHHHH-HHHHHhcCCCCCCc-eEEECCCCCCHHHHHHH--------HHHHHHhccccccceeec
Confidence 369999877543 46777754 56666552233455 78899999999998655 333333221122345666
Q ss_pred hhheecc
Q 002139 149 AMEIYNE 155 (960)
Q Consensus 149 ~lEIYNE 155 (960)
.-+..++
T Consensus 72 ~~~f~~~ 78 (219)
T PF00308_consen 72 AEEFIRE 78 (219)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 34
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=91.98 E-value=0.15 Score=62.22 Aligned_cols=53 Identities=28% Similarity=0.438 Sum_probs=37.6
Q ss_pred CceeecCeeeCCCCChHHHHHhhHHHHHHHHhCCCCEEEEEecCCCCCCccccCCC
Q 002139 68 PSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGI 123 (960)
Q Consensus 68 ~~~F~FD~VF~~~atQeeVYe~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~GI 123 (960)
...|+||..+-... +..+|. .+..++...-.+||. ||-||.+|+||||.+..|
T Consensus 282 ~~~~TFDnFvvG~s-N~~A~a-aa~avae~~~~~~Np-L~LyG~sGsGKTHLL~AI 334 (617)
T PRK14086 282 NPKYTFDTFVIGAS-NRFAHA-AAVAVAEAPAKAYNP-LFIYGESGLGKTHLLHAI 334 (617)
T ss_pred CCCCCHhhhcCCCc-cHHHHH-HHHHHHhCccccCCc-EEEECCCCCCHHHHHHHH
Confidence 45799988775443 445553 366666654456786 899999999999998653
No 35
>PRK06893 DNA replication initiation factor; Validated
Probab=91.69 E-value=0.16 Score=54.41 Aligned_cols=50 Identities=14% Similarity=0.235 Sum_probs=34.7
Q ss_pred CceeecCeeeCCCCChHHHHHhhHHHHHHHHhCCCCEEEEEecCCCCCCccccCCC
Q 002139 68 PSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGI 123 (960)
Q Consensus 68 ~~~F~FD~VF~~~atQeeVYe~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~GI 123 (960)
+..++||..++.. +..- +..+...+-.++|..++-||++|+||||.+.++
T Consensus 10 ~~~~~fd~f~~~~-~~~~-----~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai 59 (229)
T PRK06893 10 IDDETLDNFYADN-NLLL-----LDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAV 59 (229)
T ss_pred CCcccccccccCC-hHHH-----HHHHHHHhhccCCCeEEEECCCCCCHHHHHHHH
Confidence 3478999999754 2221 222233344578888999999999999998664
No 36
>PRK12377 putative replication protein; Provisional
Probab=89.00 E-value=0.25 Score=54.12 Aligned_cols=52 Identities=19% Similarity=0.243 Sum_probs=37.7
Q ss_pred eecCeeeCCCCChHHHHHhhHHHHHHHHhCCCCEEEEEecCCCCCCccccCCCc
Q 002139 71 YTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGIT 124 (960)
Q Consensus 71 F~FD~VF~~~atQeeVYe~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~GIi 124 (960)
.+||........|..++.. +..++..+..+. ..++-||++|+||||.+.+|.
T Consensus 71 ~tFdnf~~~~~~~~~a~~~-a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~AIa 122 (248)
T PRK12377 71 CSFANYQVQNDGQRYALSQ-AKSIADELMTGC-TNFVFSGKPGTGKNHLAAAIG 122 (248)
T ss_pred CCcCCcccCChhHHHHHHH-HHHHHHHHHhcC-CeEEEECCCCCCHHHHHHHHH
Confidence 4777665545566667754 777887777654 467889999999999986643
No 37
>PRK06620 hypothetical protein; Validated
Probab=88.78 E-value=0.22 Score=53.16 Aligned_cols=49 Identities=33% Similarity=0.426 Sum_probs=34.1
Q ss_pred ceeecCeeeCCCCChHHHHHhhHHHHHHHHhCCCC---EEEEEecCCCCCCccccC
Q 002139 69 SAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGIN---SSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 69 ~~F~FD~VF~~~atQeeVYe~~v~plV~svL~G~N---~tIfAYGqTGSGKTyTM~ 121 (960)
..|+||..+... ++...|.. +..+... -|+| -.++-||++|+||||.+.
T Consensus 11 ~~~tfd~Fvvg~-~N~~a~~~-~~~~~~~--~~~~~~~~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 11 SKYHPDEFIVSS-SNDQAYNI-IKNWQCG--FGVNPYKFTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred CCCCchhhEecc-cHHHHHHH-HHHHHHc--cccCCCcceEEEECCCCCCHHHHHH
Confidence 478999887655 45667765 4444431 1444 458999999999999875
No 38
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.49 E-value=0.27 Score=55.30 Aligned_cols=33 Identities=27% Similarity=0.369 Sum_probs=29.8
Q ss_pred hHHHHHHHHhCCCCEEEEEecCCCCCCccccCC
Q 002139 90 GAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 90 ~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~G 122 (960)
...+++..+++--++.|+.-|+||||||+||.-
T Consensus 112 glP~i~~~~~~~~~GLILVTGpTGSGKSTTlAa 144 (353)
T COG2805 112 GLPPIVRELAESPRGLILVTGPTGSGKSTTLAA 144 (353)
T ss_pred CCCHHHHHHHhCCCceEEEeCCCCCcHHHHHHH
Confidence 577888899999999999999999999999854
No 39
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=88.22 E-value=0.5 Score=54.83 Aligned_cols=53 Identities=26% Similarity=0.330 Sum_probs=34.1
Q ss_pred CCceeecCeeeCCCCChHHHHHhhHHHHHHHHhCCCCEEEEEecCCCCCCccccCC
Q 002139 67 FPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 67 ~~~~F~FD~VF~~~atQeeVYe~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~G 122 (960)
....|+||...- ...+...|.. +..++..--..+| .++-||++|+||||.+..
T Consensus 103 l~~~~tfd~fi~-g~~n~~a~~~-~~~~~~~~~~~~n-~l~l~G~~G~GKThL~~a 155 (405)
T TIGR00362 103 LNPKYTFDNFVV-GKSNRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLLHA 155 (405)
T ss_pred CCCCCccccccc-CCcHHHHHHH-HHHHHhCcCccCC-eEEEECCCCCcHHHHHHH
Confidence 346799998543 2345556644 5555544212244 478899999999999855
No 40
>PRK08116 hypothetical protein; Validated
Probab=87.39 E-value=0.28 Score=54.13 Aligned_cols=51 Identities=22% Similarity=0.343 Sum_probs=36.5
Q ss_pred eeecCeeeCCCCChHHHHHhhHHHHHHHHhC--CCCEEEEEecCCCCCCccccCC
Q 002139 70 AYTFDRVFWGDCSTTQVYEDGAKEIALSVVS--GINSSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 70 ~F~FD~VF~~~atQeeVYe~~v~plV~svL~--G~N~tIfAYGqTGSGKTyTM~G 122 (960)
.++||... .+..+...|.. +...++.+.. +.|..++-||++|+||||.+..
T Consensus 81 ~~tFdnf~-~~~~~~~a~~~-a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~a 133 (268)
T PRK08116 81 NSTFENFL-FDKGSEKAYKI-ARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAAC 133 (268)
T ss_pred hcchhccc-CChHHHHHHHH-HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHH
Confidence 57888655 34455556654 7777777654 3455699999999999998765
No 41
>PRK08084 DNA replication initiation factor; Provisional
Probab=86.89 E-value=0.57 Score=50.52 Aligned_cols=50 Identities=12% Similarity=0.282 Sum_probs=33.0
Q ss_pred CceeecCeeeCCCCChHHHHHhhHHHHHHHHhCCCCEEEEEecCCCCCCccccCCC
Q 002139 68 PSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGI 123 (960)
Q Consensus 68 ~~~F~FD~VF~~~atQeeVYe~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~GI 123 (960)
+..|+||..+.. .+..++.. +..++. ......++-||++|+||||.+.++
T Consensus 16 ~~~~~fd~f~~~--~n~~a~~~-l~~~~~---~~~~~~l~l~Gp~G~GKThLl~a~ 65 (235)
T PRK08084 16 PDDETFASFYPG--DNDSLLAA-LQNALR---QEHSGYIYLWSREGAGRSHLLHAA 65 (235)
T ss_pred CCcCCccccccC--ccHHHHHH-HHHHHh---CCCCCeEEEECCCCCCHHHHHHHH
Confidence 346889876654 45666654 333322 222347899999999999998653
No 42
>PRK09087 hypothetical protein; Validated
Probab=86.78 E-value=0.46 Score=51.13 Aligned_cols=47 Identities=17% Similarity=0.097 Sum_probs=32.4
Q ss_pred ceeecCeeeCCCCChHHHHHhhHHHHHHHHhCCCCEEEEEecCCCCCCccccC
Q 002139 69 SAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 69 ~~F~FD~VF~~~atQeeVYe~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~ 121 (960)
..|+||..+...+ +..+|.. +.....-.+..++-||++||||||.+.
T Consensus 16 ~~~~~~~Fi~~~~-N~~a~~~-----l~~~~~~~~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 16 PAYGRDDLLVTES-NRAAVSL-----VDHWPNWPSPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCCChhceeecCc-hHHHHHH-----HHhcccCCCCeEEEECCCCCCHHHHHH
Confidence 4689999886554 4557763 333222235568999999999999885
No 43
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=86.69 E-value=0.5 Score=55.81 Aligned_cols=51 Identities=29% Similarity=0.461 Sum_probs=35.4
Q ss_pred CceeecCeeeCCCCChHHHHHhhHHHHHHHHhCCCCEEEEEecCCCCCCccccCC
Q 002139 68 PSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 68 ~~~F~FD~VF~~~atQeeVYe~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~G 122 (960)
...|+||..+-. ..+...|.. +..++.. -..||. +|-||++|+||||.+..
T Consensus 99 ~~~~tFdnFv~g-~~n~~a~~~-~~~~~~~-~~~~n~-l~lyG~~G~GKTHLl~a 149 (440)
T PRK14088 99 NPDYTFENFVVG-PGNSFAYHA-ALEVAKN-PGRYNP-LFIYGGVGLGKTHLLQS 149 (440)
T ss_pred CCCCcccccccC-CchHHHHHH-HHHHHhC-cCCCCe-EEEEcCCCCcHHHHHHH
Confidence 457999987754 345566654 4445443 123675 99999999999999854
No 44
>PRK07952 DNA replication protein DnaC; Validated
Probab=86.44 E-value=0.46 Score=51.99 Aligned_cols=53 Identities=15% Similarity=0.154 Sum_probs=36.1
Q ss_pred eeecCeeeCCCCChHHHHHhhHHHHHHHHhCCCCEEEEEecCCCCCCccccCCCc
Q 002139 70 AYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGIT 124 (960)
Q Consensus 70 ~F~FD~VF~~~atQeeVYe~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~GIi 124 (960)
..+||........|..++.. +...++.+..|.. .++-||.+|+||||.+.+|.
T Consensus 68 ~~tFdnf~~~~~~q~~al~~-a~~~~~~~~~~~~-~~~l~G~~GtGKThLa~aia 120 (244)
T PRK07952 68 NCSFENYRVECEGQMNALSK-ARQYVEEFDGNIA-SFIFSGKPGTGKNHLAAAIC 120 (244)
T ss_pred CCccccccCCCchHHHHHHH-HHHHHHhhccCCc-eEEEECCCCCCHHHHHHHHH
Confidence 45777654444456666655 5666666555443 68899999999999986643
No 45
>PRK06526 transposase; Provisional
Probab=86.24 E-value=0.31 Score=53.54 Aligned_cols=48 Identities=19% Similarity=0.295 Sum_probs=29.5
Q ss_pred eeecCeeeCCCCChHHHHHhhHHHHHHHHhCCCCEEEEEecCCCCCCccccCCCc
Q 002139 70 AYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGIT 124 (960)
Q Consensus 70 ~F~FD~VF~~~atQeeVYe~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~GIi 124 (960)
.|.|+ +.+.-+...+..-...+.+. .+.| |+.||++|+||||.+.++.
T Consensus 72 ~fd~~--~~~~~~~~~~~~l~~~~fi~---~~~n--lll~Gp~GtGKThLa~al~ 119 (254)
T PRK06526 72 EFDFD--HQRSLKRDTIAHLGTLDFVT---GKEN--VVFLGPPGTGKTHLAIGLG 119 (254)
T ss_pred hccCc--cCCCcchHHHHHHhcCchhh---cCce--EEEEeCCCCchHHHHHHHH
Confidence 34444 44444555554433333332 3444 7899999999999997654
No 46
>PRK05642 DNA replication initiation factor; Validated
Probab=85.95 E-value=0.6 Score=50.40 Aligned_cols=48 Identities=19% Similarity=0.326 Sum_probs=30.4
Q ss_pred ceeecCeeeCCCCChHHHHHhhHHHHHHHHhC---CC-CEEEEEecCCCCCCccccCCC
Q 002139 69 SAYTFDRVFWGDCSTTQVYEDGAKEIALSVVS---GI-NSSIFAYGQTSSGKTYTMTGI 123 (960)
Q Consensus 69 ~~F~FD~VF~~~atQeeVYe~~v~plV~svL~---G~-N~tIfAYGqTGSGKTyTM~GI 123 (960)
..|+||.-+... +.. +...+....+ +. ...++-||++|+||||-+.++
T Consensus 14 ~~~tfdnF~~~~--~~~-----a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~ 65 (234)
T PRK05642 14 DDATFANYYPGA--NAA-----ALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAA 65 (234)
T ss_pred CcccccccCcCC--hHH-----HHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHH
Confidence 468999888432 333 3333333322 22 246889999999999987653
No 47
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=85.74 E-value=0.57 Score=55.27 Aligned_cols=53 Identities=30% Similarity=0.383 Sum_probs=34.7
Q ss_pred CceeecCeeeCCCCChHHHHHhhHHHHHHHHhCCCCEEEEEecCCCCCCccccCCC
Q 002139 68 PSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGI 123 (960)
Q Consensus 68 ~~~F~FD~VF~~~atQeeVYe~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~GI 123 (960)
...|+||..... ..+...|.. +..++..--..+| .++-||++|+||||.+..+
T Consensus 116 ~~~~tfd~fv~g-~~n~~a~~~-~~~~~~~~~~~~~-~l~l~G~~G~GKThL~~ai 168 (450)
T PRK00149 116 NPKYTFDNFVVG-KSNRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLLHAI 168 (450)
T ss_pred CCCCcccccccC-CCcHHHHHH-HHHHHhCcCccCC-eEEEECCCCCCHHHHHHHH
Confidence 457899885433 345556644 5555544223345 4788999999999998653
No 48
>PRK06835 DNA replication protein DnaC; Validated
Probab=85.05 E-value=0.33 Score=55.35 Aligned_cols=39 Identities=23% Similarity=0.417 Sum_probs=28.2
Q ss_pred HHHHhhHHHHHHHHhCCCCEEEEEecCCCCCCccccCCCch
Q 002139 85 QVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITE 125 (960)
Q Consensus 85 eVYe~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~GIi~ 125 (960)
.+++. +...++.+-.+. -.|+-||++|+||||.+.+|..
T Consensus 167 ~~~~~-~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~aIa~ 205 (329)
T PRK06835 167 KILEK-CKNFIENFDKNN-ENLLFYGNTGTGKTFLSNCIAK 205 (329)
T ss_pred HHHHH-HHHHHHHHhccC-CcEEEECCCCCcHHHHHHHHHH
Confidence 34433 666777776554 5699999999999998876543
No 49
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=85.04 E-value=0.81 Score=54.27 Aligned_cols=50 Identities=24% Similarity=0.429 Sum_probs=33.5
Q ss_pred eeecCeeeCCCCChHHHHHhhHHHHHHHHhCCCCEEEEEecCCCCCCccccCC
Q 002139 70 AYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 70 ~F~FD~VF~~~atQeeVYe~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~G 122 (960)
.|+||..+... +++..|. .+..++..--..|| .+|-||.+|+||||.|..
T Consensus 111 ~~tFdnFv~g~-~n~~A~~-aa~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~A 160 (450)
T PRK14087 111 ENTFENFVIGS-SNEQAFI-AVQTVSKNPGISYN-PLFIYGESGMGKTHLLKA 160 (450)
T ss_pred ccchhcccCCC-cHHHHHH-HHHHHHhCcCcccC-ceEEECCCCCcHHHHHHH
Confidence 58999877554 4556664 35555432211245 488999999999999854
No 50
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=83.94 E-value=0.95 Score=47.48 Aligned_cols=49 Identities=18% Similarity=0.426 Sum_probs=33.1
Q ss_pred CceeecCeeeCCCCChHHHHHhhHHHHHHHHhCCCCEEEEEecCCCCCCccccCC
Q 002139 68 PSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 68 ~~~F~FD~VF~~~atQeeVYe~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~G 122 (960)
+..|+||.... + .+..+++. ++.++ ..+....|+-||++|+||||.+..
T Consensus 9 ~~~~~~~~~~~-~-~~~~~~~~-l~~~~---~~~~~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 9 PDDPTFDNFYA-G-GNAELLAA-LRQLA---AGKGDRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CCchhhcCcCc-C-CcHHHHHH-HHHHH---hcCCCCeEEEECCCCCCHHHHHHH
Confidence 34678887773 2 44556554 33332 256677899999999999998754
No 51
>PRK10884 SH3 domain-containing protein; Provisional
Probab=83.14 E-value=4.3 Score=43.56 Aligned_cols=73 Identities=19% Similarity=0.196 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCCCCCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 002139 357 SDKALVKHLQKELARLESELRSPAPASS--TCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGC 429 (960)
Q Consensus 357 s~~~lik~Lq~Ei~~Le~eL~~~~~~~~--~~~~~~~l~ek~~~i~~le~ei~el~~q~d~~q~r~~~l~~~~~~ 429 (960)
+....+.++++|++.|+.+|........ ..+....+.+.+.++..|++++++|+.++..++++++.+......
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~ 164 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDD 164 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456678899999999988876543211 112233344556667778888888888888877777766655443
No 52
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=82.12 E-value=0.78 Score=54.74 Aligned_cols=33 Identities=27% Similarity=0.230 Sum_probs=27.7
Q ss_pred hHHHHHHHHhCCCCEEEEEecCCCCCCccccCC
Q 002139 90 GAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 90 ~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~G 122 (960)
.....+..++..-++.|+.-|+||||||.||..
T Consensus 245 ~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 245 FQLARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 345566788889999999999999999999854
No 53
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=81.83 E-value=1.4 Score=46.71 Aligned_cols=49 Identities=18% Similarity=0.391 Sum_probs=31.5
Q ss_pred ceeecCeeeCCCCChHHHHHhhHHHHHHHHhCCCCEEEEEecCCCCCCccccCC
Q 002139 69 SAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 69 ~~F~FD~VF~~~atQeeVYe~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~G 122 (960)
..|+||.++... ++.++.. +..++.. .+.+..++-||++|+||||.+..
T Consensus 13 ~~~~~d~f~~~~--~~~~~~~-l~~~~~~--~~~~~~~~l~G~~G~GKT~La~a 61 (227)
T PRK08903 13 PPPTFDNFVAGE--NAELVAR-LRELAAG--PVADRFFYLWGEAGSGRSHLLQA 61 (227)
T ss_pred ChhhhcccccCC--cHHHHHH-HHHHHhc--cCCCCeEEEECCCCCCHHHHHHH
Confidence 468999988332 2333332 4444331 23455789999999999998754
No 54
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=81.69 E-value=0.96 Score=44.96 Aligned_cols=32 Identities=22% Similarity=0.174 Sum_probs=21.6
Q ss_pred HHHHHHHHhCC-CCEEEEEecCCCCCCccccCC
Q 002139 91 AKEIALSVVSG-INSSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 91 v~plV~svL~G-~N~tIfAYGqTGSGKTyTM~G 122 (960)
+..++..+-.+ ....++..++||||||++|..
T Consensus 12 i~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 12 IARIINSLENKKEERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp HHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCCCcChhhhh
Confidence 33444444444 355566678999999999975
No 55
>PRK08727 hypothetical protein; Validated
Probab=81.20 E-value=0.84 Score=49.16 Aligned_cols=48 Identities=19% Similarity=0.310 Sum_probs=29.3
Q ss_pred CceeecCeeeCCCCChHHHHHhhHHHHHHHHhCCC-CEEEEEecCCCCCCccccCCC
Q 002139 68 PSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGI-NSSIFAYGQTSSGKTYTMTGI 123 (960)
Q Consensus 68 ~~~F~FD~VF~~~atQeeVYe~~v~plV~svL~G~-N~tIfAYGqTGSGKTyTM~GI 123 (960)
+..|+||.-+...+ + .+.. +..+ ..|. .-.|+-||++|+||||.+..+
T Consensus 13 ~~~~~f~~f~~~~~-n--~~~~-~~~~----~~~~~~~~l~l~G~~G~GKThL~~a~ 61 (233)
T PRK08727 13 PSDQRFDSYIAAPD-G--LLAQ-LQAL----AAGQSSDWLYLSGPAGTGKTHLALAL 61 (233)
T ss_pred CCcCChhhccCCcH-H--HHHH-HHHH----HhccCCCeEEEECCCCCCHHHHHHHH
Confidence 34678998774433 2 2222 1222 2233 235999999999999998654
No 56
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=81.04 E-value=1.4 Score=51.73 Aligned_cols=84 Identities=26% Similarity=0.353 Sum_probs=48.5
Q ss_pred CceeecCeeeCCCCChHHHHHhhHHHHHHHHhCCCCEEEEEecCCCCCCccccCCCchhhHHHHHHHHHhcccccEEEEe
Q 002139 68 PSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITECTVADIFDYIHRHEERAFVLKF 147 (960)
Q Consensus 68 ~~~F~FD~VF~~~atQeeVYe~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~GIi~rai~dLF~~I~~~~~~~f~V~v 147 (960)
...|+||...... ++...|.. +..+.+.--.-|| -||-||.+|+||||-|..+ -+++.......-.+.+
T Consensus 81 ~~~ytFdnFv~g~-~N~~A~aa-~~~va~~~g~~~n-plfi~G~~GlGKTHLl~Ai--------gn~~~~~~~~a~v~y~ 149 (408)
T COG0593 81 NPKYTFDNFVVGP-SNRLAYAA-AKAVAENPGGAYN-PLFIYGGVGLGKTHLLQAI--------GNEALANGPNARVVYL 149 (408)
T ss_pred CCCCchhheeeCC-chHHHHHH-HHHHHhccCCcCC-cEEEECCCCCCHHHHHHHH--------HHHHHhhCCCceEEec
Confidence 4579999866544 45555533 4434333222255 4889999999999998431 1222222222334566
Q ss_pred ehhheecchhcccCC
Q 002139 148 SAMEIYNEAIRDLLS 162 (960)
Q Consensus 148 S~lEIYNE~V~DLL~ 162 (960)
+.-..+++-|..+..
T Consensus 150 ~se~f~~~~v~a~~~ 164 (408)
T COG0593 150 TSEDFTNDFVKALRD 164 (408)
T ss_pred cHHHHHHHHHHHHHh
Confidence 666666676666664
No 57
>PRK08181 transposase; Validated
Probab=80.60 E-value=1.1 Score=49.88 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=18.8
Q ss_pred CCCCEEEEEecCCCCCCccccCCCc
Q 002139 100 SGINSSIFAYGQTSSGKTYTMTGIT 124 (960)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM~GIi 124 (960)
.|.| |+-||++|+||||-+.++.
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa~Aia 127 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLAAAIG 127 (269)
T ss_pred cCce--EEEEecCCCcHHHHHHHHH
Confidence 4555 8899999999999987654
No 58
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=80.57 E-value=1.3 Score=41.41 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=18.9
Q ss_pred HHHHHhCCCCEEEEEecCCCCCCcccc
Q 002139 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 94 lV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
+...+.......++.+|++|+|||+.+
T Consensus 10 i~~~~~~~~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 10 LREALELPPPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 333433434556888999999999875
No 59
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=80.55 E-value=1.4 Score=54.64 Aligned_cols=82 Identities=18% Similarity=0.260 Sum_probs=54.8
Q ss_pred ecCeeeCCCCChHHHHHhhHHHHHHHHhCCCCEEEEEecCCCCCCccccCCCchh-------------hHHHHHHHHHhc
Q 002139 72 TFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITEC-------------TVADIFDYIHRH 138 (960)
Q Consensus 72 ~FD~VF~~~atQeeVYe~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~GIi~r-------------ai~dLF~~I~~~ 138 (960)
....=|.|...|..-++. ++..+-+|....+ .+|.||||||+||..++.. ....|++.+...
T Consensus 3 ~~~~~~~~~~~Q~~ai~~----l~~~~~~~~~~~~-l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~~f 77 (655)
T TIGR00631 3 KLHSPFQPAGDQPKAIAK----LVEGLTDGEKHQT-LLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFKEF 77 (655)
T ss_pred eeccCCCCChHHHHHHHH----HHHhhhcCCCcEE-EECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHh
Confidence 334447788888887776 4455556643333 7899999999999764321 245677666543
Q ss_pred -ccccEEEEeehhheecchhc
Q 002139 139 -EERAFVLKFSAMEIYNEAIR 158 (960)
Q Consensus 139 -~~~~f~V~vS~lEIYNE~V~ 158 (960)
++..+...|||+..|.-..|
T Consensus 78 ~p~~~V~~f~sy~d~y~pe~y 98 (655)
T TIGR00631 78 FPENAVEYFVSYYDYYQPEAY 98 (655)
T ss_pred CCCCeEEEEeeecccCCcccc
Confidence 34457788999999976543
No 60
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=80.33 E-value=1.6 Score=50.01 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=23.4
Q ss_pred hHHHHHhhHHHHHHHHh-CCCCEEEEEecCCCCCCcccc
Q 002139 83 TTQVYEDGAKEIALSVV-SGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 83 QeeVYe~~v~plV~svL-~G~N~tIfAYGqTGSGKTyTM 120 (960)
-++-++....-+ ...+ .+....++-||++|+|||+++
T Consensus 35 Re~e~~~l~~~l-~~~~~~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 35 REEQIEELAFAL-RPALRGSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred HHHHHHHHHHHH-HHHhCCCCCCeEEEECCCCCCHHHHH
Confidence 344444433333 3334 345567899999999999985
No 61
>PRK08939 primosomal protein DnaI; Reviewed
Probab=80.27 E-value=0.84 Score=51.51 Aligned_cols=52 Identities=17% Similarity=0.291 Sum_probs=34.2
Q ss_pred eecCeeeCCCCChHHHHHhhHHHHHHHHhCC-CCEEEEEecCCCCCCccccCCC
Q 002139 71 YTFDRVFWGDCSTTQVYEDGAKEIALSVVSG-INSSIFAYGQTSSGKTYTMTGI 123 (960)
Q Consensus 71 F~FD~VF~~~atQeeVYe~~v~plV~svL~G-~N~tIfAYGqTGSGKTyTM~GI 123 (960)
.+||.+-.....+..++.. +...+.....| ..-.|+-||++|+||||.+.++
T Consensus 124 atf~~~~~~~~~~~~~~~~-~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Ai 176 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMA-ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAI 176 (306)
T ss_pred CcHHHhcCCChHHHHHHHH-HHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHH
Confidence 4555543333355666664 56666665543 2346999999999999998664
No 62
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=79.87 E-value=1.6 Score=49.38 Aligned_cols=21 Identities=38% Similarity=0.631 Sum_probs=17.6
Q ss_pred CCCCEEEEEecCCCCCCcccc
Q 002139 100 SGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM 120 (960)
.+....++-||++|+|||+++
T Consensus 37 ~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 37 GSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CCCCCcEEEECCCCCCHHHHH
Confidence 345668999999999999975
No 63
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=79.78 E-value=2.9 Score=48.49 Aligned_cols=34 Identities=32% Similarity=0.349 Sum_probs=21.7
Q ss_pred HHhhHHHHHHHHhCCCCEEEEEecCCCCCCcccc
Q 002139 87 YEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 87 Ye~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
++.++.-+...+-.|....++.||.||+|||.|+
T Consensus 26 i~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 26 INQLASFLAPALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHH
Confidence 3343333333333444444999999999999885
No 64
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=75.62 E-value=1.2 Score=41.19 Aligned_cols=18 Identities=28% Similarity=0.206 Sum_probs=15.2
Q ss_pred EEEecCCCCCCccccCCC
Q 002139 106 IFAYGQTSSGKTYTMTGI 123 (960)
Q Consensus 106 IfAYGqTGSGKTyTM~GI 123 (960)
++.+|+||+|||+++...
T Consensus 3 ~~i~~~~G~GKT~~~~~~ 20 (144)
T cd00046 3 VLLAAPTGSGKTLAALLP 20 (144)
T ss_pred EEEECCCCCchhHHHHHH
Confidence 567899999999998653
No 65
>PRK06921 hypothetical protein; Provisional
Probab=74.51 E-value=2 Score=47.58 Aligned_cols=34 Identities=32% Similarity=0.288 Sum_probs=24.1
Q ss_pred HHHHHHHHhC---CCCEEEEEecCCCCCCccccCCCc
Q 002139 91 AKEIALSVVS---GINSSIFAYGQTSSGKTYTMTGIT 124 (960)
Q Consensus 91 v~plV~svL~---G~N~tIfAYGqTGSGKTyTM~GIi 124 (960)
+...++.+-. +....|+-||++|+||||.+..|.
T Consensus 102 ~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~aia 138 (266)
T PRK06921 102 AVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTAAA 138 (266)
T ss_pred HHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHHHH
Confidence 5556665532 234568899999999999986643
No 66
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=74.50 E-value=9.3 Score=41.92 Aligned_cols=54 Identities=17% Similarity=0.279 Sum_probs=34.4
Q ss_pred EeCCHHHHHHHHHHHhhhhccccccCCCCCCCceeEEEEEEEeccccccCCCCceeEEEEEEEEEcCCCccc
Q 002139 187 ILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERA 258 (960)
Q Consensus 187 ~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~~~~~~~~~~~~~SkL~fVDLAGSER~ 258 (960)
.+.+++++...+...... ..+. ...-|.-+++|.|.... .-.|+||||+|-.+.
T Consensus 85 ~~~~~~~v~~~i~~~~~~-~~~~-----~~~~s~~~i~l~i~~p~------------~~~ltLIDlPGl~~~ 138 (240)
T smart00053 85 KFTDFDEVRNEIEAETDR-VTGT-----NKGISPVPINLRVYSPH------------VLNLTLIDLPGITKV 138 (240)
T ss_pred ccCCHHHHHHHHHHHHHH-hcCC-----CCcccCcceEEEEeCCC------------CCceEEEeCCCcccc
Confidence 446788888888766542 1111 12346668888886542 124899999999643
No 67
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=73.15 E-value=2.2 Score=42.17 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=19.7
Q ss_pred HHHHHhCCCCEEEEEecCCCCCCccccC
Q 002139 94 IALSVVSGINSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 94 lV~svL~G~N~tIfAYGqTGSGKTyTM~ 121 (960)
++..+++|.| ++..|+||+|||+...
T Consensus 7 ~~~~i~~~~~--~li~aptGsGKT~~~~ 32 (169)
T PF00270_consen 7 AIEAIISGKN--VLISAPTGSGKTLAYI 32 (169)
T ss_dssp HHHHHHTTSE--EEEECSTTSSHHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCccHHHHH
Confidence 3445567777 6788999999999864
No 68
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=73.15 E-value=2.8 Score=49.73 Aligned_cols=53 Identities=23% Similarity=0.261 Sum_probs=35.3
Q ss_pred CceeecCeeeCCCCChHHHHHhhHHHHHHHH--hCC--CCEEEEEecCCCCCCccccCCC
Q 002139 68 PSAYTFDRVFWGDCSTTQVYEDGAKEIALSV--VSG--INSSIFAYGQTSSGKTYTMTGI 123 (960)
Q Consensus 68 ~~~F~FD~VF~~~atQeeVYe~~v~plV~sv--L~G--~N~tIfAYGqTGSGKTyTM~GI 123 (960)
...|+||.-.-.. .+...|. .+..+.... ..| ||. +|-||++|+||||.+..+
T Consensus 105 ~~~~tFdnFv~g~-~N~~a~~-~a~~~a~~~~~~~~~~~np-l~L~G~~G~GKTHLl~Ai 161 (445)
T PRK12422 105 DPLMTFANFLVTP-ENDLPHR-ILQEFTKVSEQGKGFPFNP-IYLFGPEGSGKTHLMQAA 161 (445)
T ss_pred CccccccceeeCC-cHHHHHH-HHHHHHhccccccCCCCce-EEEEcCCCCCHHHHHHHH
Confidence 4579999877543 5555554 366565433 223 454 678999999999998653
No 69
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=72.41 E-value=2.1 Score=51.47 Aligned_cols=29 Identities=28% Similarity=0.268 Sum_probs=23.7
Q ss_pred HHHHHhCCCCEEEEEecCCCCCCccccCC
Q 002139 94 IALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 94 lV~svL~G~N~tIfAYGqTGSGKTyTM~G 122 (960)
.+..++..-++.|+..|+||||||+||..
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~a 261 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLYA 261 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 45566777778899999999999999854
No 70
>PRK10436 hypothetical protein; Provisional
Probab=72.37 E-value=1.9 Score=51.39 Aligned_cols=29 Identities=28% Similarity=0.255 Sum_probs=23.8
Q ss_pred HHHHHhCCCCEEEEEecCCCCCCccccCC
Q 002139 94 IALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 94 lV~svL~G~N~tIfAYGqTGSGKTyTM~G 122 (960)
.+..++..-++.|+..|+||||||+||.-
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~a 237 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTLYS 237 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHHHH
Confidence 45566677788999999999999999854
No 71
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=72.17 E-value=1.8 Score=52.83 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=24.2
Q ss_pred HHHHHhCCCCEEEEEecCCCCCCccccCC
Q 002139 94 IALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 94 lV~svL~G~N~tIfAYGqTGSGKTyTM~G 122 (960)
.+..++..-++.|+..|+||||||+||..
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~a 335 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLYT 335 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHHH
Confidence 45566777788999999999999999854
No 72
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=71.96 E-value=2.2 Score=46.87 Aligned_cols=51 Identities=18% Similarity=0.148 Sum_probs=33.4
Q ss_pred eeecCeeeCCCCChHHHHHhhHHHHHHHHhCCCCEEEEEecCCCCCCccccCCC
Q 002139 70 AYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGI 123 (960)
Q Consensus 70 ~F~FD~VF~~~atQeeVYe~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~GI 123 (960)
.|.|..+-.....+..+|.. +..++..+-+|.| ++-||++|+||||-..+|
T Consensus 75 ~~~~~d~~~~~~~~~~~l~~-~~~~~~~~~~~~n--l~l~G~~G~GKThLa~Ai 125 (254)
T COG1484 75 TFEEFDFEFQPGIDKKALED-LASLVEFFERGEN--LVLLGPPGVGKTHLAIAI 125 (254)
T ss_pred CcccccccCCcchhHHHHHH-HHHHHHHhccCCc--EEEECCCCCcHHHHHHHH
Confidence 34433333334467778866 6666666664444 567999999999998654
No 73
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=71.76 E-value=1.7 Score=40.07 Aligned_cols=19 Identities=32% Similarity=0.372 Sum_probs=16.1
Q ss_pred EEEEEecCCCCCCccccCC
Q 002139 104 SSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 104 ~tIfAYGqTGSGKTyTM~G 122 (960)
..++-+|++|||||+++..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~ 21 (148)
T smart00382 3 EVILIVGPPGSGKTTLARA 21 (148)
T ss_pred CEEEEECCCCCcHHHHHHH
Confidence 4578899999999999854
No 74
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=71.36 E-value=1.6 Score=46.18 Aligned_cols=21 Identities=38% Similarity=0.487 Sum_probs=15.7
Q ss_pred EEEecCCCCCCccccCCCchh
Q 002139 106 IFAYGQTSSGKTYTMTGITEC 126 (960)
Q Consensus 106 IfAYGqTGSGKTyTM~GIi~r 126 (960)
+.-+|.||||||+|+.-++..
T Consensus 26 ~~I~G~TGsGKS~~~~~ll~~ 46 (229)
T PF01935_consen 26 IAIFGTTGSGKSNTVKVLLEE 46 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 446799999999998654433
No 75
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=70.70 E-value=8.2 Score=45.18 Aligned_cols=52 Identities=17% Similarity=0.264 Sum_probs=37.3
Q ss_pred ceeecCeeeCCCCChHHHHHhhHHHHHHHHhC----CCCEEEEEecCCCCCCcccc
Q 002139 69 SAYTFDRVFWGDCSTTQVYEDGAKEIALSVVS----GINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 69 ~~F~FD~VF~~~atQeeVYe~~v~plV~svL~----G~N~tIfAYGqTGSGKTyTM 120 (960)
..+.||.+.+.----..+.+.++..++.+++. -.---|.-||+.|+|||+..
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllA 165 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQC 165 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHH
Confidence 35677777666555566667777777777774 33346788999999999874
No 76
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=70.63 E-value=1.5 Score=41.61 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=12.9
Q ss_pred CEEEEEecCCCCCCcccc
Q 002139 103 NSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 103 N~tIfAYGqTGSGKTyTM 120 (960)
..+++.+|++|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 357899999999999885
No 77
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=70.27 E-value=21 Score=36.80 Aligned_cols=65 Identities=25% Similarity=0.359 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002139 359 KALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMV 427 (960)
Q Consensus 359 ~~lik~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~ek~~~i~~le~ei~el~~q~d~~q~r~~~l~~~~ 427 (960)
....++|++|+.+|+.|+..-... +++ +.-.+.+.++.++++|++++.+++...+..+......+
T Consensus 39 ~~~~~~l~~Ei~~l~~E~~~iS~q---DeF-AkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~ 103 (161)
T PF04420_consen 39 SKEQRQLRKEILQLKRELNAISAQ---DEF-AKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKV 103 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS-TT---TSH-HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCcH---HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788999999999999876433 233 33345677888999999999999888887777665544
No 78
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=70.16 E-value=4.3 Score=47.59 Aligned_cols=51 Identities=18% Similarity=0.242 Sum_probs=33.9
Q ss_pred eeecCeeeCCCCChHHHHHhhHHHHHH-HHhC--C--CCEEEEEecCCCCCCcccc
Q 002139 70 AYTFDRVFWGDCSTTQVYEDGAKEIAL-SVVS--G--INSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 70 ~F~FD~VF~~~atQeeVYe~~v~plV~-svL~--G--~N~tIfAYGqTGSGKTyTM 120 (960)
..+|+.|-+.+..-+++-+.+..|+.. .++. | ....|+-||++|+|||+..
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 467787877665555555555555543 2333 2 3456889999999999986
No 79
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=70.07 E-value=3.5 Score=46.78 Aligned_cols=44 Identities=16% Similarity=0.189 Sum_probs=28.6
Q ss_pred eCCCCChHHHHHhhHHHHHHHHhCC-CCEEEEEecCCCCCCcccc
Q 002139 77 FWGDCSTTQVYEDGAKEIALSVVSG-INSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 77 F~~~atQeeVYe~~v~plV~svL~G-~N~tIfAYGqTGSGKTyTM 120 (960)
|.|.+.-+-++++.+..++...+.+ .---.+-||+.|+|||.|.
T Consensus 30 YrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTSta 74 (346)
T KOG0989|consen 30 YRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTA 74 (346)
T ss_pred hCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHH
Confidence 4444444445555555555555554 4456788999999999996
No 80
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=69.94 E-value=2.5 Score=48.25 Aligned_cols=30 Identities=23% Similarity=0.312 Sum_probs=22.5
Q ss_pred HHHHHHhCCCCEEEEEecCCCCCCccccCC
Q 002139 93 EIALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 93 plV~svL~G~N~tIfAYGqTGSGKTyTM~G 122 (960)
+.+..++.--.+.|+-.|+||||||+||..
T Consensus 112 ~~l~~~~~~~~g~ili~G~tGSGKTT~l~a 141 (343)
T TIGR01420 112 PVLRELAERPRGLILVTGPTGSGKSTTLAS 141 (343)
T ss_pred HHHHHHHhhcCcEEEEECCCCCCHHHHHHH
Confidence 455555544457788999999999999854
No 81
>PF13245 AAA_19: Part of AAA domain
Probab=69.74 E-value=2.5 Score=38.05 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=18.0
Q ss_pred HHHHhCCCCEEEEEecCCCCCCccccCC
Q 002139 95 ALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 95 V~svL~G~N~tIfAYGqTGSGKTyTM~G 122 (960)
|...+. -+..+..-|+.|||||+|+..
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~~~ 29 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTLAA 29 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHHHH
Confidence 444455 333344589999999999754
No 82
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=69.09 E-value=2 Score=46.82 Aligned_cols=19 Identities=37% Similarity=0.506 Sum_probs=15.3
Q ss_pred CEEEEEecCCCCCCccccC
Q 002139 103 NSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~ 121 (960)
.+.|+..|.||||||.+|.
T Consensus 127 ~~~ili~G~tGSGKTT~l~ 145 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLN 145 (270)
T ss_dssp TEEEEEEESTTSSHHHHHH
T ss_pred ceEEEEECCCccccchHHH
Confidence 4556667999999999973
No 83
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=69.06 E-value=2 Score=45.03 Aligned_cols=19 Identities=32% Similarity=0.508 Sum_probs=16.2
Q ss_pred EEEEEecCCCCCCccccCC
Q 002139 104 SSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 104 ~tIfAYGqTGSGKTyTM~G 122 (960)
+.|+-.|+||||||+++.-
T Consensus 2 GlilI~GptGSGKTTll~~ 20 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAA 20 (198)
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 5688899999999999743
No 84
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=68.67 E-value=2.9 Score=48.60 Aligned_cols=28 Identities=21% Similarity=0.227 Sum_probs=20.1
Q ss_pred HHHHHhCCCCEEEEEecCCCCCCccccCC
Q 002139 94 IALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 94 lV~svL~G~N~tIfAYGqTGSGKTyTM~G 122 (960)
+++.++. .++.|+..|+||||||+||..
T Consensus 141 ~~~~l~~-~~GlilI~G~TGSGKTT~l~a 168 (372)
T TIGR02525 141 LFNSLLP-AAGLGLICGETGSGKSTLAAS 168 (372)
T ss_pred HHHHHHh-cCCEEEEECCCCCCHHHHHHH
Confidence 3334433 456788899999999999844
No 85
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=68.33 E-value=2.1 Score=44.48 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=17.0
Q ss_pred EEEEEecCCCCCCccccCCCc
Q 002139 104 SSIFAYGQTSSGKTYTMTGIT 124 (960)
Q Consensus 104 ~tIfAYGqTGSGKTyTM~GIi 124 (960)
-.|+-||++|+||||...++.
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~ 68 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIA 68 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHHHH
Confidence 458899999999999986643
No 86
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=68.28 E-value=2.9 Score=48.29 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=19.4
Q ss_pred hCCCCEEEEEecCCCCCCccccCC
Q 002139 99 VSGINSSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 99 L~G~N~tIfAYGqTGSGKTyTM~G 122 (960)
+.--.+.|+..|+||||||+||..
T Consensus 130 ~~~~~glilI~GpTGSGKTTtL~a 153 (358)
T TIGR02524 130 IAPQEGIVFITGATGSGKSTLLAA 153 (358)
T ss_pred HhccCCEEEEECCCCCCHHHHHHH
Confidence 333568899999999999999854
No 87
>PF12846 AAA_10: AAA-like domain
Probab=68.24 E-value=2.1 Score=46.22 Aligned_cols=20 Identities=35% Similarity=0.504 Sum_probs=16.6
Q ss_pred CEEEEEecCCCCCCccccCC
Q 002139 103 NSSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~G 122 (960)
|.-++..|.||||||++|.-
T Consensus 1 n~h~~i~G~tGsGKT~~~~~ 20 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKN 20 (304)
T ss_pred CCeEEEECCCCCcHHHHHHH
Confidence 45678899999999998854
No 88
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=67.64 E-value=4 Score=45.62 Aligned_cols=32 Identities=25% Similarity=0.296 Sum_probs=26.2
Q ss_pred hHHHHHHHHhCCCCEEEEEecCCCCCCccccC
Q 002139 90 GAKEIALSVVSGINSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 90 ~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~ 121 (960)
...+++..+.--.-+.|+..|+|||||++||.
T Consensus 114 ~LPevlk~la~~kRGLviiVGaTGSGKSTtmA 145 (375)
T COG5008 114 KLPEVLKDLALAKRGLVIIVGATGSGKSTTMA 145 (375)
T ss_pred CCcHHHHHhhcccCceEEEECCCCCCchhhHH
Confidence 35566777777777889999999999999994
No 89
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=67.33 E-value=4.1 Score=44.91 Aligned_cols=128 Identities=19% Similarity=0.300 Sum_probs=70.8
Q ss_pred eeecCeeeCCCCChHHHHHhhHHHHHHHHhCCCCE-EEEEecCCCCCCccccCCCchhhHHHHHHHHHhcccccEEEEee
Q 002139 70 AYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINS-SIFAYGQTSSGKTYTMTGITECTVADIFDYIHRHEERAFVLKFS 148 (960)
Q Consensus 70 ~F~FD~VF~~~atQeeVYe~~v~plV~svL~G~N~-tIfAYGqTGSGKTyTM~GIi~rai~dLF~~I~~~~~~~f~V~vS 148 (960)
...+|...+-+...+.+.+. ...+++|..+ -++.||..|+|||.++.++ ........ +-
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~N-----t~~Fl~G~pannvLL~G~rGtGKSSlVkal--------l~~y~~~G-------LR 82 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIEN-----TEQFLQGLPANNVLLWGARGTGKSSLVKAL--------LNEYADQG-------LR 82 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHH-----HHHHHcCCCCcceEEecCCCCCHHHHHHHH--------HHHHhhcC-------ce
Confidence 34566666655444444444 2567777765 3677999999999887543 22222211 44
Q ss_pred hhheecchhcccCCCCCCCce-eeeCCCCC-eEeccceEEEe-CCHHHHHHHHHHHhhhhccccccCCCCCCCceeE
Q 002139 149 AMEIYNEAIRDLLSTDNTPLR-LLDDPEKG-VVVEKVTEEIL-KDWNHLKELLSICEAQRRIGETLLNEKSSRSHQI 222 (960)
Q Consensus 149 ~lEIYNE~V~DLL~~~~~~L~-i~ed~~~g-v~V~gLte~~V-~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~I 222 (960)
.+||..+.+.||-.- +. ++..+.+- +++.+|+-..- .++..+..+|.-|...| ....-+..+|.|-|.|
T Consensus 83 lIev~k~~L~~l~~l----~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~-P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 83 LIEVSKEDLGDLPEL----LDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEAR-PDNVLIYATSNRRHLV 154 (249)
T ss_pred EEEECHHHhccHHHH----HHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccC-CCcEEEEEecchhhcc
Confidence 577777766555310 00 00111111 23444442221 24667777777666554 4556677788888877
No 90
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=66.00 E-value=3.4 Score=45.63 Aligned_cols=28 Identities=29% Similarity=0.304 Sum_probs=21.0
Q ss_pred HHHHhCCCCEEEEEecCCCCCCccccCC
Q 002139 95 ALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 95 V~svL~G~N~tIfAYGqTGSGKTyTM~G 122 (960)
+..++..-.+.|+-.|+||||||+||..
T Consensus 72 l~~~~~~~~GlilisG~tGSGKTT~l~a 99 (264)
T cd01129 72 FRKLLEKPHGIILVTGPTGSGKTTTLYS 99 (264)
T ss_pred HHHHHhcCCCEEEEECCCCCcHHHHHHH
Confidence 4455555556788889999999999854
No 91
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=65.91 E-value=3.9 Score=47.56 Aligned_cols=51 Identities=18% Similarity=0.227 Sum_probs=29.4
Q ss_pred eeecCeeeCCCCChHHHHHhhHHHHHH-HHhC--C--CCEEEEEecCCCCCCcccc
Q 002139 70 AYTFDRVFWGDCSTTQVYEDGAKEIAL-SVVS--G--INSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 70 ~F~FD~VF~~~atQeeVYe~~v~plV~-svL~--G--~N~tIfAYGqTGSGKTyTM 120 (960)
.++||.|-+-+..-+++.+.+..|+.. ..+. | ....|+-||++|+|||+..
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHH
Confidence 355565555443334444444444433 2222 2 2346889999999999876
No 92
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=65.75 E-value=4.3 Score=43.73 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=17.7
Q ss_pred hCCCCEEEEEecCCCCCCccccC
Q 002139 99 VSGINSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 99 L~G~N~tIfAYGqTGSGKTyTM~ 121 (960)
+......++-+|+.|+|||+.+.
T Consensus 39 ~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred HhcCCCEEEEEcCCCCCHHHHHH
Confidence 44445578889999999998763
No 93
>PRK09183 transposase/IS protein; Provisional
Probab=64.79 E-value=2.7 Score=46.21 Aligned_cols=46 Identities=20% Similarity=0.231 Sum_probs=26.9
Q ss_pred cCeeeCCCCChHHHHHhhHHHHHHHHhCCCCEEEEEecCCCCCCccccCCC
Q 002139 73 FDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGI 123 (960)
Q Consensus 73 FD~VF~~~atQeeVYe~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~GI 123 (960)
||.-|.+..+...+..-..... +-.|.| |+-+|++|+||||.+.++
T Consensus 77 fd~~~~~~~~~~~i~~L~~~~~---i~~~~~--v~l~Gp~GtGKThLa~al 122 (259)
T PRK09183 77 YDFTFATGAPQKQLQSLRSLSF---IERNEN--IVLLGPSGVGKTHLAIAL 122 (259)
T ss_pred cccccCCCCCHHHHHHHhcCCc---hhcCCe--EEEEeCCCCCHHHHHHHH
Confidence 4444555555544433211111 234554 557999999999998654
No 94
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=64.12 E-value=6.7 Score=50.26 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=18.3
Q ss_pred CCCCEEEEEecCCCCCCccccCC
Q 002139 100 SGINSSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM~G 122 (960)
.|-+.+||-||++|+|||.|+.-
T Consensus 778 sgpnnvLYIyG~PGTGKTATVK~ 800 (1164)
T PTZ00112 778 SGSNQILYISGMPGTGKTATVYS 800 (1164)
T ss_pred CCCCceEEEECCCCCCHHHHHHH
Confidence 35556789999999999998743
No 95
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=62.97 E-value=3.3 Score=42.68 Aligned_cols=29 Identities=31% Similarity=0.463 Sum_probs=20.8
Q ss_pred HHHHHHHhCCCCEEEEEecCCCCCCcccc
Q 002139 92 KEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 92 ~plV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
..+...+-.|.+.+++-||+.|+|||+.|
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl 37 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLL 37 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHH
Confidence 34444444567889999999999999876
No 96
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=62.76 E-value=4 Score=42.89 Aligned_cols=28 Identities=14% Similarity=0.214 Sum_probs=19.4
Q ss_pred HHHHHhCCCCEEEEEecCCCCCCccccC
Q 002139 94 IALSVVSGINSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 94 lV~svL~G~N~tIfAYGqTGSGKTyTM~ 121 (960)
.+..++...+..++..|+.||||||+|.
T Consensus 9 a~~~~l~~~~~~~~l~G~aGtGKT~~l~ 36 (196)
T PF13604_consen 9 AVRAILTSGDRVSVLQGPAGTGKTTLLK 36 (196)
T ss_dssp HHHHHHHCTCSEEEEEESTTSTHHHHHH
T ss_pred HHHHHHhcCCeEEEEEECCCCCHHHHHH
Confidence 3445555544445568999999999874
No 97
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=62.12 E-value=3.2 Score=39.15 Aligned_cols=15 Identities=33% Similarity=0.432 Sum_probs=13.2
Q ss_pred EEEecCCCCCCcccc
Q 002139 106 IFAYGQTSSGKTYTM 120 (960)
Q Consensus 106 IfAYGqTGSGKTyTM 120 (960)
|+-||+.|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 578999999999875
No 98
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=61.62 E-value=3.3 Score=43.81 Aligned_cols=17 Identities=41% Similarity=0.446 Sum_probs=14.7
Q ss_pred EEEEecCCCCCCccccC
Q 002139 105 SIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM~ 121 (960)
.|+-.|+||+|||.|+.
T Consensus 3 vi~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIA 19 (196)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCchHhHHH
Confidence 47788999999999974
No 99
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=60.94 E-value=5.5 Score=45.39 Aligned_cols=29 Identities=31% Similarity=0.415 Sum_probs=20.1
Q ss_pred HHHHHHhCCCCEEEEEecCCCCCCccccCC
Q 002139 93 EIALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 93 plV~svL~G~N~tIfAYGqTGSGKTyTM~G 122 (960)
.++..++.+. ..|+-.|.||||||++|..
T Consensus 139 ~~L~~~v~~~-~~ilI~G~tGSGKTTll~a 167 (319)
T PRK13894 139 EAIIAAVRAH-RNILVIGGTGSGKTTLVNA 167 (319)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHHHH
Confidence 4555556554 4566669999999988754
No 100
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=60.68 E-value=9.3 Score=43.83 Aligned_cols=52 Identities=15% Similarity=0.260 Sum_probs=29.1
Q ss_pred eeecCeeeCCCCChHHHHHhhHHHHHHH-HhC--CC--CEEEEEecCCCCCCccccC
Q 002139 70 AYTFDRVFWGDCSTTQVYEDGAKEIALS-VVS--GI--NSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 70 ~F~FD~VF~~~atQeeVYe~~v~plV~s-vL~--G~--N~tIfAYGqTGSGKTyTM~ 121 (960)
.+.||.+.+-+..-+++.+.+..|+... .+. |. ...|+-||++|+|||++..
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lak 174 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAK 174 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHH
Confidence 4556666554433334444433333321 111 22 3458899999999998864
No 101
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=60.61 E-value=6.5 Score=43.80 Aligned_cols=43 Identities=21% Similarity=0.271 Sum_probs=26.6
Q ss_pred ecCeeeCCCCChHHHHHhhHHHHHHHHhCCCCEEEEEecCCCCCCccccCC
Q 002139 72 TFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 72 ~FD~VF~~~atQeeVYe~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~G 122 (960)
+||.+.+ ++++.+. +...+-.|....++-||++|+|||+++..
T Consensus 13 ~~~~~~g----~~~~~~~----L~~~~~~~~~~~lll~Gp~GtGKT~la~~ 55 (337)
T PRK12402 13 LLEDILG----QDEVVER----LSRAVDSPNLPHLLVQGPPGSGKTAAVRA 55 (337)
T ss_pred cHHHhcC----CHHHHHH----HHHHHhCCCCceEEEECCCCCCHHHHHHH
Confidence 5677764 3444333 22222345434588899999999998743
No 102
>PF13479 AAA_24: AAA domain
Probab=60.34 E-value=4.3 Score=43.10 Aligned_cols=20 Identities=35% Similarity=0.483 Sum_probs=16.8
Q ss_pred CEEEEEecCCCCCCccccCC
Q 002139 103 NSSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~G 122 (960)
+..++.||++|+|||++...
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~ 22 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAAS 22 (213)
T ss_pred ceEEEEECCCCCCHHHHHHh
Confidence 45789999999999998754
No 103
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=59.55 E-value=5.8 Score=45.96 Aligned_cols=114 Identities=14% Similarity=0.181 Sum_probs=60.6
Q ss_pred ceEEEEEcCCCCchhhhcCCCcceEEeCCcEEEeccCCCCCCC---------CCceeecCeeeCCCCChHHHHHhhHHHH
Q 002139 24 KILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGST---------FPSAYTFDRVFWGDCSTTQVYEDGAKEI 94 (960)
Q Consensus 24 ~I~V~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~~~~s~---------~~~~F~FD~VF~~~atQeeVYe~~v~pl 94 (960)
.-+.+|++.+...++.... ..-.+.+..+..+...++.... ..-.-+|+-|=+-+..-++|.+.+-.|+
T Consensus 94 g~~~vV~i~~~vd~~~L~p--G~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL 171 (406)
T COG1222 94 GPKFVVNILSFVDRDLLEP--GMRVALNRDSYSIVRVLPPEVDPRVSVMEVEEKPDVTYEDIGGLDEQIQEIREVVELPL 171 (406)
T ss_pred CCeEEEeccCCcCHHHcCC--CCEEEEcCCcceeeeeCCCccCchhheeeeccCCCCChhhccCHHHHHHHHHHHhcccc
Confidence 4467888888776664322 2223334333222222211100 0012344444444444455666666666
Q ss_pred HHH-Hh--CCCCE--EEEEecCCCCCCcccc-----------------------CCCchhhHHHHHHHHHhcc
Q 002139 95 ALS-VV--SGINS--SIFAYGQTSSGKTYTM-----------------------TGITECTVADIFDYIHRHE 139 (960)
Q Consensus 95 V~s-vL--~G~N~--tIfAYGqTGSGKTyTM-----------------------~GIi~rai~dLF~~I~~~~ 139 (960)
.+- ++ -|+.- -|+.||+.|+|||-.- .|--+|.++++|....++.
T Consensus 172 ~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lAreka 244 (406)
T COG1222 172 KNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKA 244 (406)
T ss_pred cCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcC
Confidence 542 22 25543 5899999999998643 1444677788887776544
No 104
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=59.52 E-value=2.5 Score=52.59 Aligned_cols=84 Identities=27% Similarity=0.442 Sum_probs=41.9
Q ss_pred eeecCeeeCCCCChHHHHHhhHHHHHHHHhCCCCEEEEEecCCCCCCccccCCCc--hhhHHHHHHHHHhcccccEEEEe
Q 002139 70 AYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGIT--ECTVADIFDYIHRHEERAFVLKF 147 (960)
Q Consensus 70 ~F~FD~VF~~~atQeeVYe~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~GIi--~rai~dLF~~I~~~~~~~f~V~v 147 (960)
.+.|+.+......+..-+.. +.+.+..++++++.. +|++|++.+-- ...+..++..+.......- ..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 95 (670)
T KOG0239|consen 27 RFELARVYSPSVGQPSLFSD-VQPFVQSALEGLNVK--------AGLTYTMEGSNQPGGLLARLFKELIDLANSDK--TS 95 (670)
T ss_pred ccCccccccccccccccCCc-cccchhhhhhhhhcc--------hhhhhhhhhhcCcchhHHHhhhhcccccccCC--Cc
Confidence 45666665543222222222 233344555555554 89999997621 1223333332221111111 11
Q ss_pred ehhheecchhcccCCCC
Q 002139 148 SAMEIYNEAIRDLLSTD 164 (960)
Q Consensus 148 S~lEIYNE~V~DLL~~~ 164 (960)
..++.|++.+.|++..-
T Consensus 96 ~~~~~~~~~~~~~~~~~ 112 (670)
T KOG0239|consen 96 NVVEAYNERLRDLLSEL 112 (670)
T ss_pred hhHHHHHHHHhhhcccc
Confidence 17899999999998643
No 105
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=59.32 E-value=6.4 Score=43.77 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=17.5
Q ss_pred CCC-CEEEEEecCCCCCCccccCC
Q 002139 100 SGI-NSSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 100 ~G~-N~tIfAYGqTGSGKTyTM~G 122 (960)
.|. ...++-||++|+|||+.+..
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~~ 62 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAKA 62 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHHH
Confidence 453 45667799999999998754
No 106
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=58.79 E-value=4.3 Score=38.25 Aligned_cols=16 Identities=31% Similarity=0.372 Sum_probs=14.0
Q ss_pred EEEEecCCCCCCcccc
Q 002139 105 SIFAYGQTSSGKTYTM 120 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (960)
.|+-.|++|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4788999999999875
No 107
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=58.43 E-value=5.6 Score=41.01 Aligned_cols=30 Identities=27% Similarity=0.307 Sum_probs=18.4
Q ss_pred HHHHhCCCCEEEEEecCCCCCCccccCCCch
Q 002139 95 ALSVVSGINSSIFAYGQTSSGKTYTMTGITE 125 (960)
Q Consensus 95 V~svL~G~N~tIfAYGqTGSGKTyTM~GIi~ 125 (960)
|..++..-. ..+..|+.|||||+|+..++-
T Consensus 10 i~~~~~~~~-~~~i~GpPGTGKT~~l~~~i~ 39 (236)
T PF13086_consen 10 IQSALSSNG-ITLIQGPPGTGKTTTLASIIA 39 (236)
T ss_dssp HHHHCTSSE--EEEE-STTSSHHHHHHHHHH
T ss_pred HHHHHcCCC-CEEEECCCCCChHHHHHHHHH
Confidence 344443333 455689999999999866443
No 108
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=58.00 E-value=5.4 Score=44.95 Aligned_cols=29 Identities=28% Similarity=0.357 Sum_probs=20.7
Q ss_pred HHHHHHhCCCCEEEEEecCCCCCCccccCC
Q 002139 93 EIALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 93 plV~svL~G~N~tIfAYGqTGSGKTyTM~G 122 (960)
.++..++.+ ...|+-.|.||||||++|..
T Consensus 123 ~~L~~~v~~-~~~ilI~G~tGSGKTTll~a 151 (299)
T TIGR02782 123 DVLREAVLA-RKNILVVGGTGSGKTTLANA 151 (299)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHHHH
Confidence 445555554 34677889999999998743
No 109
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=57.71 E-value=3.9 Score=40.97 Aligned_cols=32 Identities=25% Similarity=0.429 Sum_probs=18.0
Q ss_pred hCCCCEEEEEecCCCCCCccccCCCchhhHHHHHHHHHhc
Q 002139 99 VSGINSSIFAYGQTSSGKTYTMTGITECTVADIFDYIHRH 138 (960)
Q Consensus 99 L~G~N~tIfAYGqTGSGKTyTM~GIi~rai~dLF~~I~~~ 138 (960)
..|....++-+|..|+|||+.+ ..++..+...
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll--------~~~~~~~~~~ 51 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLL--------RALLDRLAER 51 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHH--------HHHHHHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHH--------HHHHHHHHhc
Confidence 4566788999999999999874 4455555544
No 110
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=57.19 E-value=7.2 Score=38.41 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=17.6
Q ss_pred HHHhCCCCEEEEEecCCCCCCccccCC
Q 002139 96 LSVVSGINSSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 96 ~svL~G~N~tIfAYGqTGSGKTyTM~G 122 (960)
..++.+. ..++..|++|||||.++..
T Consensus 18 ~~~~~~~-~~~~i~~~~GsGKT~~~~~ 43 (201)
T smart00487 18 EALLSGL-RDVILAAPTGSGKTLAALL 43 (201)
T ss_pred HHHHcCC-CcEEEECCCCCchhHHHHH
Confidence 3444442 3456678999999998754
No 111
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=56.44 E-value=85 Score=39.55 Aligned_cols=36 Identities=25% Similarity=0.324 Sum_probs=27.3
Q ss_pred HHHHHhhHHHHHHHHh-CCCCEEEEEecCCCCCCcccc
Q 002139 84 TQVYEDGAKEIALSVV-SGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 84 eeVYe~~v~plV~svL-~G~N~tIfAYGqTGSGKTyTM 120 (960)
-.||.- +......++ .|.|.||+.-|.+|||||.+.
T Consensus 67 PHifav-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (679)
T cd00124 67 PHVFAI-ADRAYRNMLRDRRNQSIIISGESGAGKTENT 103 (679)
T ss_pred CCHHHH-HHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 346654 444455554 599999999999999999985
No 112
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=56.40 E-value=10 Score=44.39 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=17.0
Q ss_pred CEEEEEecCCCCCCccccCC
Q 002139 103 NSSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~G 122 (960)
...|+.+|+||+|||+|+.-
T Consensus 174 ~~vi~lvGptGvGKTTT~aK 193 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAK 193 (388)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 46788999999999999744
No 113
>PHA00729 NTP-binding motif containing protein
Probab=56.03 E-value=9.5 Score=41.61 Aligned_cols=34 Identities=26% Similarity=0.246 Sum_probs=25.5
Q ss_pred HHHHHHHHhCCCCEEEEEecCCCCCCccccCCCc
Q 002139 91 AKEIALSVVSGINSSIFAYGQTSSGKTYTMTGIT 124 (960)
Q Consensus 91 v~plV~svL~G~N~tIfAYGqTGSGKTyTM~GIi 124 (960)
++.++..+..|--..|+.+|.+|+||||....+.
T Consensus 5 ~k~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa 38 (226)
T PHA00729 5 AKKIVSAYNNNGFVSAVIFGKQGSGKTTYALKVA 38 (226)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCCCHHHHHHHHH
Confidence 5566777665444689999999999999876543
No 114
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=56.03 E-value=31 Score=38.51 Aligned_cols=124 Identities=15% Similarity=0.154 Sum_probs=67.3
Q ss_pred cCCCCCCCceEEEEEcCCCCchhhhcCCCcc-eEEeCCcEEEeccCCCCC------CCCCceeecCeeeCCCCChHHHHH
Q 002139 16 QAPSAREEKILVLVRLRPLSEKEITADEATD-WECINDTTILYRNTLREG------STFPSAYTFDRVFWGDCSTTQVYE 88 (960)
Q Consensus 16 ~~~~~~~~~I~V~VRVRPl~~~E~~~~~~~~-~~~~~~~ti~~~~~~~~~------s~~~~~F~FD~VF~~~atQeeVYe 88 (960)
.+--+....-.-+|||-....+|+.....++ ++..++.-+-+-++..+. ....-.-++.-|=+-+..-++|-+
T Consensus 90 t~ivgsttgsny~vrilstidrellkps~svalhrhsnalvdvlppeadssi~ml~~~ekpdvsy~diggld~qkqeire 169 (408)
T KOG0727|consen 90 TAIVGSTTGSNYYVRILSTIDRELLKPSASVALHRHSNALVDVLPPEADSSISMLGPDEKPDVSYADIGGLDVQKQEIRE 169 (408)
T ss_pred CceeecccCCceEEeehhhhhHHHcCCccchhhhhcccceeeccCCcccccccccCCCCCCCccccccccchhhHHHHHH
Confidence 3444455556788999998888865433221 111111111111110000 000112344445455555556666
Q ss_pred hhHHHHHHHHh---CCCC--EEEEEecCCCCCCcccc-----------------------CCCchhhHHHHHHHHHhcc
Q 002139 89 DGAKEIALSVV---SGIN--SSIFAYGQTSSGKTYTM-----------------------TGITECTVADIFDYIHRHE 139 (960)
Q Consensus 89 ~~v~plV~svL---~G~N--~tIfAYGqTGSGKTyTM-----------------------~GIi~rai~dLF~~I~~~~ 139 (960)
.+-.|+...-+ =|++ -.|+.||+.|+|||-.. .|--||.++|+|....++.
T Consensus 170 avelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlakena 248 (408)
T KOG0727|consen 170 AVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENA 248 (408)
T ss_pred HHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccC
Confidence 66666665444 1443 35899999999998543 2566788888888776544
No 115
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=56.02 E-value=7 Score=44.77 Aligned_cols=30 Identities=33% Similarity=0.305 Sum_probs=19.8
Q ss_pred HHHHHHHhCCCCEEEEEecCCCCCCccccCC
Q 002139 92 KEIALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 92 ~plV~svL~G~N~tIfAYGqTGSGKTyTM~G 122 (960)
..++..++.+. ..|+..|.||||||++|..
T Consensus 150 ~~~L~~~v~~~-~nili~G~tgSGKTTll~a 179 (332)
T PRK13900 150 KEFLEHAVISK-KNIIISGGTSTGKTTFTNA 179 (332)
T ss_pred HHHHHHHHHcC-CcEEEECCCCCCHHHHHHH
Confidence 34444444433 3366779999999998743
No 116
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=55.70 E-value=82 Score=28.58 Aligned_cols=52 Identities=21% Similarity=0.270 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002139 361 LVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVG 428 (960)
Q Consensus 361 lik~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~ek~~~i~~le~ei~el~~q~d~~q~r~~~l~~~~~ 428 (960)
.+..|+.++..|+.+-. ....+...|+.++..|+.++...+.++..|+..+.
T Consensus 19 ti~~Lq~e~eeLke~n~----------------~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 19 TIALLQMENEELKEKNN----------------ELKEENEELKEENEQLKQERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 35566777776665431 12245677888999999999999999999888765
No 117
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=55.39 E-value=17 Score=43.25 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=26.6
Q ss_pred ecCeeeCCCCChHHHHHhhHHHHHHHH-hC--CC--CEEEEEecCCCCCCcccc
Q 002139 72 TFDRVFWGDCSTTQVYEDGAKEIALSV-VS--GI--NSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 72 ~FD~VF~~~atQeeVYe~~v~plV~sv-L~--G~--N~tIfAYGqTGSGKTyTM 120 (960)
+|+.|.+-+..-+++.+.+..|+...- +. |. ...|+-||++|+|||++.
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLA 234 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHH
Confidence 455554443333444444444443321 11 21 224778999999999886
No 118
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=55.18 E-value=2.9 Score=43.60 Aligned_cols=19 Identities=26% Similarity=0.448 Sum_probs=14.0
Q ss_pred EEEEecCCCCCCccccCCC
Q 002139 105 SIFAYGQTSSGKTYTMTGI 123 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM~GI 123 (960)
-++.+|+||||||.++..+
T Consensus 40 h~li~G~tgsGKS~~l~~l 58 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRTL 58 (205)
T ss_dssp SEEEE--TTSSHHHHHHHH
T ss_pred eEEEEcCCCCCccHHHHHH
Confidence 4788999999999997553
No 119
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=55.14 E-value=9 Score=44.76 Aligned_cols=40 Identities=20% Similarity=0.411 Sum_probs=28.7
Q ss_pred CEEEEEecCCCCCCccccCCCchhhHHHHHHHHHhcccccEEEEeehhheecc
Q 002139 103 NSSIFAYGQTSSGKTYTMTGITECTVADIFDYIHRHEERAFVLKFSAMEIYNE 155 (960)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~GIi~rai~dLF~~I~~~~~~~f~V~vS~lEIYNE 155 (960)
-+.|+-||.+||||||++ +.+|+..+ .-.|++.++|-|.=
T Consensus 30 PS~~~iyG~sgTGKT~~~--------r~~l~~~n-----~~~vw~n~~ecft~ 69 (438)
T KOG2543|consen 30 PSIVHIYGHSGTGKTYLV--------RQLLRKLN-----LENVWLNCVECFTY 69 (438)
T ss_pred ceeEEEeccCCCchhHHH--------HHHHhhcC-----CcceeeehHHhccH
Confidence 334699999999999984 45566552 22488888988853
No 120
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=54.66 E-value=8.7 Score=47.55 Aligned_cols=47 Identities=26% Similarity=0.530 Sum_probs=1.1
Q ss_pred HHHHHHHHHHHhhhcccceeeeheeeeeecCCCCCcee--EEeeehhhh
Q 002139 783 FERQRRELFQLWQTCNVSLVHRTYFFLLFRGDPSDSIY--MGVELKRLS 829 (960)
Q Consensus 783 f~~~~~~iieLW~~C~vslvHRtyFfllfkGd~~D~iY--mevElrrL~ 829 (960)
.++.|.+|-+||+.|++|--.|..|--.|-.+.++.+- +|.|+-||.
T Consensus 288 I~~~R~ei~elWd~~~~s~eer~~F~~~~~d~~~E~lL~~hE~Ei~~Lk 336 (619)
T PF03999_consen 288 IEKKRQEIEELWDKCHYSEEERQAFTPFYIDSYTEELLELHEEEIERLK 336 (619)
T ss_dssp -----------------------------------------------HH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 47789999999999999999999988888766666654 899998874
No 121
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=54.36 E-value=1.3e+02 Score=38.40 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=26.1
Q ss_pred HHHHhhHHHHHHHHh-CCCCEEEEEecCCCCCCcccc
Q 002139 85 QVYEDGAKEIALSVV-SGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 85 eVYe~~v~plV~svL-~G~N~tIfAYGqTGSGKTyTM 120 (960)
.||.- +......++ .|.|-||+.-|.+|||||.|.
T Consensus 73 Hifai-A~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 108 (717)
T cd01382 73 HVFAI-ADKAYRDMKVLKMSQSIIVSGESGAGKTENT 108 (717)
T ss_pred cHHHH-HHHHHHHHHhcCCCCeEEEecCCCCChhHHH
Confidence 36654 443444443 699999999999999999986
No 122
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=54.36 E-value=8.1 Score=39.99 Aligned_cols=29 Identities=28% Similarity=0.310 Sum_probs=19.1
Q ss_pred HHHHHHHhCCCCEEEEEecCCCCCCccccC
Q 002139 92 KEIALSVVSGINSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 92 ~plV~svL~G~N~tIfAYGqTGSGKTyTM~ 121 (960)
.+++..++.. ...+.-.|+||||||.+|.
T Consensus 15 ~~~l~~~v~~-g~~i~I~G~tGSGKTTll~ 43 (186)
T cd01130 15 AAYLWLAVEA-RKNILISGGTGSGKTTLLN 43 (186)
T ss_pred HHHHHHHHhC-CCEEEEECCCCCCHHHHHH
Confidence 3344444443 3346677999999999873
No 123
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=54.17 E-value=7.2 Score=44.61 Aligned_cols=29 Identities=28% Similarity=0.283 Sum_probs=19.3
Q ss_pred HHHHHHhCCCCEEEEEecCCCCCCccccCC
Q 002139 93 EIALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 93 plV~svL~G~N~tIfAYGqTGSGKTyTM~G 122 (960)
.++..++.+. ..|+-.|.||||||++|..
T Consensus 135 ~~L~~~v~~~-~nilI~G~tGSGKTTll~a 163 (323)
T PRK13833 135 SVIRSAIDSR-LNIVISGGTGSGKTTLANA 163 (323)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHHHH
Confidence 3344444432 2467889999999999843
No 124
>PF14282 FlxA: FlxA-like protein
Probab=53.95 E-value=64 Score=31.10 Aligned_cols=58 Identities=26% Similarity=0.341 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002139 359 KALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVE 421 (960)
Q Consensus 359 ~~lik~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~ek~~~i~~le~ei~el~~q~d~~q~r~~ 421 (960)
...++.|+++|..|+.+|......... -.+++..+++.|..+|..|+.|+..++.+..
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~-----~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~ 75 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDL-----DAEQKQQQIQLLQAQIQQLQAQIAQLQSQQA 75 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999988765442111 1234556667777777777777776665544
No 125
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=53.67 E-value=9.4 Score=44.03 Aligned_cols=36 Identities=17% Similarity=0.373 Sum_probs=26.8
Q ss_pred CChHHHHHhhHHHHHHHHhCCCCEEEEEecCCCCCCcccc
Q 002139 81 CSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 81 atQeeVYe~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
..|+.+|+.+...+. ......+|.-|+-|+||||.+
T Consensus 4 ~eQ~~~~~~v~~~~~----~~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 4 EEQRRVFDTVIEAIE----NEEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred HHHHHHHHHHHHHHH----ccCCcEEEEEcCCCCChhHHH
Confidence 468889988655443 244456788999999999985
No 126
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=53.17 E-value=18 Score=46.09 Aligned_cols=54 Identities=24% Similarity=0.310 Sum_probs=31.2
Q ss_pred HHHHhCCCCEEEEEecCCCCCCccccCCCchhhHHHHHHHH-HhcccccEEEEeehhhee
Q 002139 95 ALSVVSGINSSIFAYGQTSSGKTYTMTGITECTVADIFDYI-HRHEERAFVLKFSAMEIY 153 (960)
Q Consensus 95 V~svL~G~N~tIfAYGqTGSGKTyTM~GIi~rai~dLF~~I-~~~~~~~f~V~vS~lEIY 153 (960)
+..+.+|.|+.|.| +||||||-+- ++| ++..|+..- ....+.-+.|+||=+---
T Consensus 31 ~~~i~~G~nvLiiA--PTGsGKTeAA--fLp-il~~l~~~~~~~~~~~i~~lYIsPLkAL 85 (814)
T COG1201 31 IPEIHSGENVLIIA--PTGSGKTEAA--FLP-VINELLSLGKGKLEDGIYALYISPLKAL 85 (814)
T ss_pred HHHHhCCCceEEEc--CCCCChHHHH--HHH-HHHHHHhccCCCCCCceEEEEeCcHHHH
Confidence 34567999999998 9999998763 222 222233221 111233566676655443
No 127
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=53.10 E-value=8.4 Score=44.41 Aligned_cols=28 Identities=29% Similarity=0.265 Sum_probs=20.9
Q ss_pred HHHHHHHhCCCCEEEEEecCCCCCCcccc
Q 002139 92 KEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 92 ~plV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
..++..++.+. +.|+-.|.||||||+++
T Consensus 163 a~~L~~av~~r-~NILisGGTGSGKTTlL 190 (355)
T COG4962 163 AKFLRRAVGIR-CNILISGGTGSGKTTLL 190 (355)
T ss_pred HHHHHHHHhhc-eeEEEeCCCCCCHHHHH
Confidence 34444555555 77888999999999987
No 128
>PRK06547 hypothetical protein; Provisional
Probab=52.64 E-value=12 Score=38.88 Aligned_cols=30 Identities=27% Similarity=0.288 Sum_probs=21.2
Q ss_pred HHHHHHHHhCCCCEEEEEecCCCCCCcccc
Q 002139 91 AKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 91 v~plV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
+..++..+..+.---|.-+|.+|||||+..
T Consensus 3 ~~~~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 3 VALIAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 344555655556666677799999999865
No 129
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=52.04 E-value=10 Score=38.97 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=16.8
Q ss_pred HHHhCCCCEEEEEecCCCCCCccc
Q 002139 96 LSVVSGINSSIFAYGQTSSGKTYT 119 (960)
Q Consensus 96 ~svL~G~N~tIfAYGqTGSGKTyT 119 (960)
..++.|.| ++..++||+|||.+
T Consensus 31 ~~~~~~~~--~li~~~TG~GKT~~ 52 (203)
T cd00268 31 PPLLSGRD--VIGQAQTGSGKTAA 52 (203)
T ss_pred HHHhcCCc--EEEECCCCCcHHHH
Confidence 44555887 46678999999977
No 130
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=51.97 E-value=6.7 Score=51.73 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=23.3
Q ss_pred HHHHHHHHhCCCCEEEEEecCCCCCCccccCCCch
Q 002139 91 AKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITE 125 (960)
Q Consensus 91 v~plV~svL~G~N~tIfAYGqTGSGKTyTM~GIi~ 125 (960)
+..+++.+.+|....++. .+||||||+||.+++.
T Consensus 422 I~ai~~a~~~g~r~~Ll~-maTGSGKT~tai~li~ 455 (1123)
T PRK11448 422 IQAVEKAIVEGQREILLA-MATGTGKTRTAIALMY 455 (1123)
T ss_pred HHHHHHHHHhccCCeEEE-eCCCCCHHHHHHHHHH
Confidence 444555555676654444 8999999999877543
No 131
>PRK11637 AmiB activator; Provisional
Probab=51.32 E-value=74 Score=37.56 Aligned_cols=25 Identities=12% Similarity=0.251 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002139 399 IQKMEREIRELTKQRDLAQSRVEDL 423 (960)
Q Consensus 399 i~~le~ei~el~~q~d~~q~r~~~l 423 (960)
|..++.++.+++.+++.++.++..+
T Consensus 98 i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 98 LNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444433333
No 132
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=50.53 E-value=10 Score=44.76 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=17.9
Q ss_pred HHHHhCCCCEEEEEecCCCCCCccc
Q 002139 95 ALSVVSGINSSIFAYGQTSSGKTYT 119 (960)
Q Consensus 95 V~svL~G~N~tIfAYGqTGSGKTyT 119 (960)
+..+++|.| +++.++||||||.+
T Consensus 35 i~~~l~g~d--vi~~a~TGsGKT~a 57 (460)
T PRK11776 35 LPAILAGKD--VIAQAKTGSGKTAA 57 (460)
T ss_pred HHHHhcCCC--EEEECCCCCcHHHH
Confidence 345678988 67778999999965
No 133
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=50.48 E-value=5.6 Score=37.63 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=18.4
Q ss_pred EEEecCCCCCCccccCCCchhhHHHHHHHH
Q 002139 106 IFAYGQTSSGKTYTMTGITECTVADIFDYI 135 (960)
Q Consensus 106 IfAYGqTGSGKTyTM~GIi~rai~dLF~~I 135 (960)
|+-||++|.|||+.+. ..+.+|.+.+
T Consensus 1 I~i~G~~G~GKS~l~~----~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAK----ELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHH----HHHHHHHHHh
Confidence 5789999999998763 2344555544
No 134
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=50.31 E-value=6.9 Score=37.82 Aligned_cols=15 Identities=33% Similarity=0.441 Sum_probs=13.3
Q ss_pred EEEecCCCCCCcccc
Q 002139 106 IFAYGQTSSGKTYTM 120 (960)
Q Consensus 106 IfAYGqTGSGKTyTM 120 (960)
|+..|.+|||||+..
T Consensus 2 ii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 2 IILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999874
No 135
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=50.26 E-value=25 Score=38.99 Aligned_cols=55 Identities=24% Similarity=0.243 Sum_probs=36.1
Q ss_pred HHHHHHHHhC---CCCEEEEEecCCCCCCccccCCCchhhHHHHHHHHHhc-ccccEEEEeehhhee
Q 002139 91 AKEIALSVVS---GINSSIFAYGQTSSGKTYTMTGITECTVADIFDYIHRH-EERAFVLKFSAMEIY 153 (960)
Q Consensus 91 v~plV~svL~---G~N~tIfAYGqTGSGKTyTM~GIi~rai~dLF~~I~~~-~~~~f~V~vS~lEIY 153 (960)
+..+.+-+.+ .-+.+|.-||+-|||||+-| ..+.+.+... ...-+.+.++.+..-
T Consensus 5 a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l--------~~l~~~L~~~~~~~~~~i~fn~w~~~ 63 (325)
T PF07693_consen 5 AKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFL--------NMLKEELKEDNKEKYIFIYFNAWEYD 63 (325)
T ss_pred HHHHHHHHhccCCCCCeEEEEECCCCCCHHHHH--------HHHHHHHhcccccceeeEEEccccCC
Confidence 4444444443 56889999999999999875 4456666655 344556666666554
No 136
>PTZ00424 helicase 45; Provisional
Probab=50.09 E-value=10 Score=43.49 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=19.5
Q ss_pred HHHHHHhCCCCEEEEEecCCCCCCcccc
Q 002139 93 EIALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 93 plV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
..+..+++|.|.. ..++||||||.+.
T Consensus 57 ~ai~~i~~~~d~i--i~apTGsGKT~~~ 82 (401)
T PTZ00424 57 RGIKPILDGYDTI--GQAQSGTGKTATF 82 (401)
T ss_pred HHHHHHhCCCCEE--EECCCCChHHHHH
Confidence 3455677899864 5689999999764
No 137
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=49.85 E-value=14 Score=41.23 Aligned_cols=32 Identities=31% Similarity=0.338 Sum_probs=25.1
Q ss_pred HhhHHHHHHHHhCCCCEEEEEecCCCCCCcccc
Q 002139 88 EDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 88 e~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
...+.||+ ..+.--+..|-.||+|++|||.++
T Consensus 179 ~afa~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~ 210 (286)
T PF06048_consen 179 AAFAAPLL-SLLGVEGFGFHLYGQSSSGKTTAL 210 (286)
T ss_pred HHHHHHHH-HHhCCCceEEEEEeCCCCCHHHHH
Confidence 34455665 666777788999999999999888
No 138
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=49.68 E-value=6.4 Score=38.21 Aligned_cols=15 Identities=27% Similarity=0.437 Sum_probs=13.4
Q ss_pred EEEecCCCCCCcccc
Q 002139 106 IFAYGQTSSGKTYTM 120 (960)
Q Consensus 106 IfAYGqTGSGKTyTM 120 (960)
|+-+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999875
No 139
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=49.53 E-value=12 Score=41.82 Aligned_cols=17 Identities=29% Similarity=0.604 Sum_probs=14.6
Q ss_pred EEEEEecCCCCCCcccc
Q 002139 104 SSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (960)
-.|+-||++|+|||++-
T Consensus 152 knVLFyGppGTGKTm~A 168 (368)
T COG1223 152 KNVLFYGPPGTGKTMMA 168 (368)
T ss_pred ceeEEECCCCccHHHHH
Confidence 36788999999999876
No 140
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=49.23 E-value=11 Score=46.79 Aligned_cols=43 Identities=21% Similarity=0.325 Sum_probs=30.3
Q ss_pred eecCeeeCCCCChHHHHHhhHHHHHHHHhCCCCEEEEEecCCCCCCccccC
Q 002139 71 YTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 71 F~FD~VF~~~atQeeVYe~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~ 121 (960)
.+||.+++.+ ..... ++..+..++...++-||++|+|||+...
T Consensus 151 ~~~~~iiGqs----~~~~~----l~~~ia~~~~~~vlL~Gp~GtGKTTLAr 193 (615)
T TIGR02903 151 RAFSEIVGQE----RAIKA----LLAKVASPFPQHIILYGPPGVGKTTAAR 193 (615)
T ss_pred CcHHhceeCc----HHHHH----HHHHHhcCCCCeEEEECCCCCCHHHHHH
Confidence 4778787643 33332 4455566888889999999999998753
No 141
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=48.93 E-value=8.6 Score=39.80 Aligned_cols=17 Identities=29% Similarity=0.347 Sum_probs=14.5
Q ss_pred EEEEEecCCCCCCcccc
Q 002139 104 SSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (960)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46888999999999964
No 142
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=48.60 E-value=51 Score=32.71 Aligned_cols=35 Identities=23% Similarity=0.470 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 002139 397 LQIQKMEREIRELTKQRDLAQSRVEDLLRMVGCDQ 431 (960)
Q Consensus 397 ~~i~~le~ei~el~~q~d~~q~r~~~l~~~~~~~~ 431 (960)
.+++....++..|+.+...++.|.+.++.++|+..
T Consensus 61 e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~ 95 (120)
T PF12325_consen 61 EELRALKKEVEELEQELEELQQRYQTLLELLGEKS 95 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 34455667777888888889999999999998754
No 143
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=48.49 E-value=7.8 Score=43.16 Aligned_cols=19 Identities=37% Similarity=0.434 Sum_probs=15.6
Q ss_pred EEEEecCCCCCCccccCCC
Q 002139 105 SIFAYGQTSSGKTYTMTGI 123 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM~GI 123 (960)
.|.-.|+||+|||+|+..+
T Consensus 196 vi~~vGptGvGKTTt~~kL 214 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKL 214 (282)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5666699999999998654
No 144
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=47.98 E-value=7.3 Score=42.30 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=15.9
Q ss_pred CCEEEEEecCCCCCCccccCC
Q 002139 102 INSSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 102 ~N~tIfAYGqTGSGKTyTM~G 122 (960)
.++.++..|..|||||+||..
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~~ 32 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLLE 32 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHHH
T ss_pred CCCCEEEEeCCCCCchHHHHH
Confidence 667777888999999999843
No 145
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=47.85 E-value=7.9 Score=36.26 Aligned_cols=16 Identities=38% Similarity=0.266 Sum_probs=13.4
Q ss_pred EEEecCCCCCCccccC
Q 002139 106 IFAYGQTSSGKTYTMT 121 (960)
Q Consensus 106 IfAYGqTGSGKTyTM~ 121 (960)
|+-.|.+|||||+...
T Consensus 1 I~i~G~~GsGKtTia~ 16 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAK 16 (129)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred CEEECCCCCCHHHHHH
Confidence 5778999999998763
No 146
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=47.47 E-value=15 Score=44.16 Aligned_cols=51 Identities=22% Similarity=0.184 Sum_probs=28.9
Q ss_pred eeecCeeeCCCCChHHHHHhhHHHHHH-HHh----CCCCEEEEEecCCCCCCccccC
Q 002139 70 AYTFDRVFWGDCSTTQVYEDGAKEIAL-SVV----SGINSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 70 ~F~FD~VF~~~atQeeVYe~~v~plV~-svL----~G~N~tIfAYGqTGSGKTyTM~ 121 (960)
..+||.|.+.+...+++.+ .+..+-. ..+ ....-.|+-||++|+|||+...
T Consensus 51 ~~~~~di~g~~~~k~~l~~-~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~ 106 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELME-IVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAK 106 (495)
T ss_pred CCCHHHhCCHHHHHHHHHH-HHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHH
Confidence 5678888776544333332 2222110 011 1122358889999999999874
No 147
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=47.46 E-value=13 Score=46.58 Aligned_cols=35 Identities=29% Similarity=0.340 Sum_probs=26.2
Q ss_pred HHHHhhHHHHHHHH-hCCCCEEEEEecCCCCCCcccc
Q 002139 85 QVYEDGAKEIALSV-VSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 85 eVYe~~v~plV~sv-L~G~N~tIfAYGqTGSGKTyTM 120 (960)
.||.- +......+ ..|.|-||+..|.+|||||.++
T Consensus 67 Hif~~-a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 67 HIFAV-AQRAYRQMLRTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp SHHHH-HHHHHHHHHHHTSEEEEEEEESTTSSHHHHH
T ss_pred ccchh-hhcccccccccccccceeeccccccccccch
Confidence 47755 33333444 4699999999999999999985
No 148
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=47.09 E-value=12 Score=45.38 Aligned_cols=30 Identities=23% Similarity=0.330 Sum_probs=23.1
Q ss_pred HHHHHHHHhCCCC--EEEEEecCCCCCCcccc
Q 002139 91 AKEIALSVVSGIN--SSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 91 v~plV~svL~G~N--~tIfAYGqTGSGKTyTM 120 (960)
++..++..+.|.. ..++.+|++|+|||.|+
T Consensus 31 V~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 31 VRSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 5666666666653 56888999999999997
No 149
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=46.99 E-value=12 Score=43.67 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=19.5
Q ss_pred HHHHHhCCCCEEEEEecCCCCCCcccc
Q 002139 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 94 lV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
.+..+++|.| +++.++||||||.+.
T Consensus 31 ai~~~~~g~d--~l~~apTGsGKT~~~ 55 (434)
T PRK11192 31 AIPPALDGRD--VLGSAPTGTGKTAAF 55 (434)
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 3455678887 788899999999763
No 150
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=46.79 E-value=16 Score=41.59 Aligned_cols=69 Identities=20% Similarity=0.313 Sum_probs=47.6
Q ss_pred ecCeeeCCCCChHHHHHhhHHHH-HHHHhCCCC---EEEEEecCCCCCCcccc-----------------------CCCc
Q 002139 72 TFDRVFWGDCSTTQVYEDGAKEI-ALSVVSGIN---SSIFAYGQTSSGKTYTM-----------------------TGIT 124 (960)
Q Consensus 72 ~FD~VF~~~atQeeVYe~~v~pl-V~svL~G~N---~tIfAYGqTGSGKTyTM-----------------------~GIi 124 (960)
..+-|-+-+..-+.+-+.++.|+ ..+++.|.- ..|+.||+.|+||+|.- +|--
T Consensus 131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGES 210 (439)
T KOG0739|consen 131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGES 210 (439)
T ss_pred chhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccH
Confidence 34555555555555555566665 346666654 67999999999999965 2556
Q ss_pred hhhHHHHHHHHHhccc
Q 002139 125 ECTVADIFDYIHRHEE 140 (960)
Q Consensus 125 ~rai~dLF~~I~~~~~ 140 (960)
+..+..||....++..
T Consensus 211 EkLVknLFemARe~kP 226 (439)
T KOG0739|consen 211 EKLVKNLFEMARENKP 226 (439)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 6788899998876653
No 151
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=46.38 E-value=8.2 Score=44.48 Aligned_cols=29 Identities=28% Similarity=0.339 Sum_probs=19.3
Q ss_pred HHHHHHhCCCCEEEEEecCCCCCCccccCC
Q 002139 93 EIALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 93 plV~svL~G~N~tIfAYGqTGSGKTyTM~G 122 (960)
.++..++.+ ...|+..|+||||||++|..
T Consensus 153 ~~l~~~v~~-~~nilI~G~tGSGKTTll~a 181 (344)
T PRK13851 153 AFLHACVVG-RLTMLLCGPTGSGKTTMSKT 181 (344)
T ss_pred HHHHHHHHc-CCeEEEECCCCccHHHHHHH
Confidence 344444432 33467789999999998843
No 152
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=45.77 E-value=14 Score=39.79 Aligned_cols=19 Identities=26% Similarity=0.466 Sum_probs=13.6
Q ss_pred CCEEEEEecCCCCCCcccc
Q 002139 102 INSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 102 ~N~tIfAYGqTGSGKTyTM 120 (960)
.+-.+++.|+.||||||..
T Consensus 18 ~~~~v~~~G~AGTGKT~LA 36 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLA 36 (205)
T ss_dssp H-SEEEEE--TTSSTTHHH
T ss_pred hCCeEEEECCCCCcHHHHH
Confidence 5558999999999999864
No 153
>PRK13764 ATPase; Provisional
Probab=45.73 E-value=11 Score=46.68 Aligned_cols=20 Identities=20% Similarity=0.307 Sum_probs=16.8
Q ss_pred CEEEEEecCCCCCCccccCC
Q 002139 103 NSSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~G 122 (960)
...|+..|+||||||+++..
T Consensus 257 ~~~ILIsG~TGSGKTTll~A 276 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQA 276 (602)
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 44488999999999999855
No 154
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=45.71 E-value=70 Score=31.04 Aligned_cols=65 Identities=20% Similarity=0.239 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 002139 363 KHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGC 429 (960)
Q Consensus 363 k~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~ek~~~i~~le~ei~el~~q~d~~q~r~~~l~~~~~~ 429 (960)
..|+.+..-|+..+-.... ........|++++..|.+++.|+.-|.-..+.+..|++.|...+..
T Consensus 8 sKLraQ~~vLKKaVieEQ~--k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~ 72 (102)
T PF10205_consen 8 SKLRAQNQVLKKAVIEEQA--KNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEE 72 (102)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555544321111 1334566788889999999999999999999999999988887764
No 155
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=45.40 E-value=11 Score=44.38 Aligned_cols=43 Identities=23% Similarity=0.366 Sum_probs=31.5
Q ss_pred ecCeeeCCCCChHHHHHhhHHHHHHHHhCCCCEEEEEecCCCCCCccc
Q 002139 72 TFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYT 119 (960)
Q Consensus 72 ~FD~VF~~~atQeeVYe~~v~plV~svL~G~N~tIfAYGqTGSGKTyT 119 (960)
+||.|++ |+.+... .+++=.-+-.|.-.+.+-||+.|+|||..
T Consensus 22 ~lde~vG----Q~HLlg~-~~~lrr~v~~~~l~SmIl~GPPG~GKTTl 64 (436)
T COG2256 22 SLDEVVG----QEHLLGE-GKPLRRAVEAGHLHSMILWGPPGTGKTTL 64 (436)
T ss_pred CHHHhcC----hHhhhCC-CchHHHHHhcCCCceeEEECCCCCCHHHH
Confidence 4566664 6666655 55565556678888899999999999864
No 156
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=45.14 E-value=77 Score=37.31 Aligned_cols=56 Identities=16% Similarity=0.316 Sum_probs=29.8
Q ss_pred cchhccccccccchHHHHHHHHHHhcCCCCcccCCCCcccccccCCCCCCcccceEeccCC
Q 002139 265 GARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSP 325 (960)
Q Consensus 265 g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mI~tISP 325 (960)
|..++++.. .-|..+-.++..-++.+ ++.+|+---=+=|.+.|+.+++ ++||.+..
T Consensus 185 GV~vr~~~~--e~l~~F~~l~~~T~~R~--~f~~r~~~Yf~~l~~~f~d~a~-~~~A~l~~ 240 (406)
T PF02388_consen 185 GVEVREGSR--EELDDFYDLYKETAERK--GFSIRSLEYFENLYDAFGDKAK-FFLAELNG 240 (406)
T ss_dssp TEEEEEE-C--HHHHHHHHHHHHHHHHT--T-----HHHHHHHHHHCCCCEE-EEEEEECC
T ss_pred ceEEEEcCH--HHHHHHHHHHHHHHhhC--CCcccCHHHHHHHHHhcCCCeE-EEEEEEcH
Confidence 444444422 34777777777776643 5666665544556667766654 77777654
No 157
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=44.65 E-value=14 Score=46.26 Aligned_cols=35 Identities=31% Similarity=0.581 Sum_probs=25.7
Q ss_pred CEEEEEecCCCCCCccccC-----------------------CCchhhHHHHHHHHHh
Q 002139 103 NSSIFAYGQTSSGKTYTMT-----------------------GITECTVADIFDYIHR 137 (960)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~-----------------------GIi~rai~dLF~~I~~ 137 (960)
-..|+.||+.|+||||... |--+..+++||.....
T Consensus 701 ~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~ 758 (952)
T KOG0735|consen 701 RTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQS 758 (952)
T ss_pred ccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhc
Confidence 3458999999999999762 3445667777776654
No 158
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=44.52 E-value=14 Score=43.22 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=18.2
Q ss_pred HHHHhCCCCEEEEEecCCCCCCcccc
Q 002139 95 ALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 95 V~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
+..++.|.|. ++-++||||||.+.
T Consensus 39 ip~il~g~dv--i~~ApTGsGKTla~ 62 (423)
T PRK04837 39 LPLTLAGRDV--AGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHhCCCcE--EEECCCCchHHHHH
Confidence 4456789885 55669999999764
No 159
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=44.39 E-value=17 Score=42.86 Aligned_cols=37 Identities=24% Similarity=0.449 Sum_probs=24.1
Q ss_pred HHHHhhHHHHHHHHhCCC----CEEEEEecCCCCCCccccC
Q 002139 85 QVYEDGAKEIALSVVSGI----NSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 85 eVYe~~v~plV~svL~G~----N~tIfAYGqTGSGKTyTM~ 121 (960)
..|......+..++.+-. ..-|.-.||||.|||+|+.
T Consensus 181 ~~~~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlA 221 (407)
T COG1419 181 RYFSEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLA 221 (407)
T ss_pred hhHHHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHH
Confidence 344444444444444442 5667778999999999984
No 160
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=44.36 E-value=84 Score=38.88 Aligned_cols=33 Identities=24% Similarity=0.517 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002139 394 KKDLQIQKMEREIRELTKQRDLAQSRVEDLLRM 426 (960)
Q Consensus 394 ek~~~i~~le~ei~el~~q~d~~q~r~~~l~~~ 426 (960)
.++..|..|++++.+-....+.+..++..+.++
T Consensus 478 ~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~ 510 (652)
T COG2433 478 ARDRRIERLEKELEEKKKRVEELERKLAELRKM 510 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555556666555555533
No 161
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=44.36 E-value=9.5 Score=44.14 Aligned_cols=46 Identities=15% Similarity=0.340 Sum_probs=31.6
Q ss_pred ceeecCeeeCCCCChHHHHHhhHHHHHHHHhCCCCEEEEEecCCCCCCccccCC
Q 002139 69 SAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 69 ~~F~FD~VF~~~atQeeVYe~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~G 122 (960)
..|.|+.|-+. +++ -.-++..+.+..-+.|+.+|.+||||||.+.+
T Consensus 12 ~~~pf~~ivGq----~~~----k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~ 57 (350)
T CHL00081 12 PVFPFTAIVGQ----EEM----KLALILNVIDPKIGGVMIMGDRGTGKSTTIRA 57 (350)
T ss_pred CCCCHHHHhCh----HHH----HHHHHHhccCCCCCeEEEEcCCCCCHHHHHHH
Confidence 47999988874 433 33344455554445688999999999998744
No 162
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=43.80 E-value=12 Score=37.36 Aligned_cols=25 Identities=16% Similarity=0.375 Sum_probs=16.4
Q ss_pred EEE-EecCCCCCCccccCCCchhhHHHHHH
Q 002139 105 SIF-AYGQTSSGKTYTMTGITECTVADIFD 133 (960)
Q Consensus 105 tIf-AYGqTGSGKTyTM~GIi~rai~dLF~ 133 (960)
.|+ -.|.||+||||+- ....+.||.
T Consensus 54 LVlSfHG~tGtGKn~v~----~liA~~ly~ 79 (127)
T PF06309_consen 54 LVLSFHGWTGTGKNFVS----RLIAEHLYK 79 (127)
T ss_pred EEEEeecCCCCcHHHHH----HHHHHHHHh
Confidence 344 4599999999973 233445554
No 163
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=43.58 E-value=11 Score=39.37 Aligned_cols=21 Identities=29% Similarity=0.268 Sum_probs=15.2
Q ss_pred CCCEEEEEecCCCCCCccccC
Q 002139 101 GINSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 101 G~N~tIfAYGqTGSGKTyTM~ 121 (960)
..-..+|..||.|||||+.+.
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~ 33 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLAR 33 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHH
Confidence 344578889999999998763
No 164
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.05 E-value=47 Score=37.20 Aligned_cols=68 Identities=16% Similarity=0.210 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 002139 361 LVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGCD 430 (960)
Q Consensus 361 lik~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~ek~~~i~~le~ei~el~~q~d~~q~r~~~l~~~~~~~ 430 (960)
.+.+++++...++.+|...... ..+......+.+.+|.+++.+|++++.+++.+.++|.+....+.+.
T Consensus 39 ~l~~~~~~~~~~q~ei~~L~~q--i~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~r 106 (265)
T COG3883 39 KLSELQKEKKNIQNEIESLDNQ--IEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKR 106 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555544332111 1123344455566677777777777777777777776666655543
No 165
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=42.95 E-value=16 Score=43.23 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=18.8
Q ss_pred HHHHhCCCCEEEEEecCCCCCCcccc
Q 002139 95 ALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 95 V~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
+..+++|.| |++-.+||||||.+.
T Consensus 32 i~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 32 IPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHhCCCC--EEEECCCCCcHHHHH
Confidence 455678988 677789999999774
No 166
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=42.91 E-value=18 Score=39.85 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=17.1
Q ss_pred CCCCEEEEEecCCCCCCccccC
Q 002139 100 SGINSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM~ 121 (960)
.|...-++-||+.|+|||+++.
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~~ 56 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAAL 56 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHHH
Confidence 4544457889999999998864
No 167
>PLN03025 replication factor C subunit; Provisional
Probab=42.80 E-value=19 Score=40.63 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=17.1
Q ss_pred CCCEEEEEecCCCCCCccccCCC
Q 002139 101 GINSSIFAYGQTSSGKTYTMTGI 123 (960)
Q Consensus 101 G~N~tIfAYGqTGSGKTyTM~GI 123 (960)
|.-..++-||+.|+|||++...+
T Consensus 32 ~~~~~lll~Gp~G~GKTtla~~l 54 (319)
T PLN03025 32 GNMPNLILSGPPGTGKTTSILAL 54 (319)
T ss_pred CCCceEEEECCCCCCHHHHHHHH
Confidence 43334667999999999998653
No 168
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=42.29 E-value=11 Score=43.96 Aligned_cols=21 Identities=29% Similarity=0.319 Sum_probs=17.2
Q ss_pred CEEEEEecCCCCCCccccCCC
Q 002139 103 NSSIFAYGQTSSGKTYTMTGI 123 (960)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~GI 123 (960)
...+.-+|+||+|||+|+..+
T Consensus 137 g~ii~lvGptGvGKTTtiakL 157 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKL 157 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 456778999999999998554
No 169
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=42.19 E-value=13 Score=46.40 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=16.4
Q ss_pred EEEEecCCCCCCccccCCCc
Q 002139 105 SIFAYGQTSSGKTYTMTGIT 124 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM~GIi 124 (960)
.++-.|++|||||||+..++
T Consensus 175 ~~lI~GpPGTGKT~t~~~ii 194 (637)
T TIGR00376 175 LFLIHGPPGTGKTRTLVELI 194 (637)
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 45689999999999986654
No 170
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=42.09 E-value=17 Score=40.89 Aligned_cols=30 Identities=30% Similarity=0.323 Sum_probs=20.7
Q ss_pred HHHHHHHHhCCCCEEEEEecCCCCCCccccC
Q 002139 91 AKEIALSVVSGINSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 91 v~plV~svL~G~N~tIfAYGqTGSGKTyTM~ 121 (960)
+.+++..++.+. ..|+-.|+||||||+.|.
T Consensus 133 ~~~~l~~~v~~~-~~ili~G~tGsGKTTll~ 162 (308)
T TIGR02788 133 IKEFLRLAIASR-KNIIISGGTGSGKTTFLK 162 (308)
T ss_pred HHHHHHHHhhCC-CEEEEECCCCCCHHHHHH
Confidence 445566666544 355567999999999763
No 171
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=41.91 E-value=13 Score=40.69 Aligned_cols=20 Identities=20% Similarity=0.150 Sum_probs=16.2
Q ss_pred CEEEEEecCCCCCCccccCC
Q 002139 103 NSSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~G 122 (960)
...++-||++|+|||++...
T Consensus 42 ~~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred cceEEEEcCCCCCHHHHHHH
Confidence 34578899999999998644
No 172
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=41.65 E-value=8.1 Score=45.24 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=16.2
Q ss_pred CEEEEEecCCCCCCccccCCC
Q 002139 103 NSSIFAYGQTSSGKTYTMTGI 123 (960)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~GI 123 (960)
+--++.+|+||||||..|..+
T Consensus 42 ~~h~~i~g~tGsGKt~~i~~l 62 (410)
T cd01127 42 EAHTMIIGTTGTGKTTQIREL 62 (410)
T ss_pred hccEEEEcCCCCCHHHHHHHH
Confidence 345788999999999875443
No 173
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=41.38 E-value=17 Score=43.45 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=18.5
Q ss_pred HHHHHHHhCCCCEEEEEecCCCCCCcccc
Q 002139 92 KEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 92 ~plV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
..++..+..|-|. +-||++|+||||..
T Consensus 185 e~l~~~L~~~~~i--il~GppGtGKT~lA 211 (459)
T PRK11331 185 ETILKRLTIKKNI--ILQGPPGVGKTFVA 211 (459)
T ss_pred HHHHHHHhcCCCE--EEECCCCCCHHHHH
Confidence 3344455556655 44999999999875
No 174
>PRK13342 recombination factor protein RarA; Reviewed
Probab=41.24 E-value=15 Score=42.94 Aligned_cols=45 Identities=24% Similarity=0.321 Sum_probs=27.4
Q ss_pred ecCeeeCCCCChHHHHHhhHHHHHHHHhCCCCEEEEEecCCCCCCccccC
Q 002139 72 TFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 72 ~FD~VF~~~atQeeVYe~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~ 121 (960)
+||.+.+ |+.+... .+.+...+-.+.-..++-||++|+|||+...
T Consensus 10 ~l~d~vG----q~~~v~~-~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 10 TLDEVVG----QEHLLGP-GKPLRRMIEAGRLSSMILWGPPGTGKTTLAR 54 (413)
T ss_pred CHHHhcC----cHHHhCc-chHHHHHHHcCCCceEEEECCCCCCHHHHHH
Confidence 3455554 4444433 2334444445665677779999999998764
No 175
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=41.23 E-value=17 Score=40.25 Aligned_cols=39 Identities=18% Similarity=0.178 Sum_probs=22.7
Q ss_pred ChHHHHHhhHHHHHHHHhC--CCCEEEEEecCCCCCCccccC
Q 002139 82 STTQVYEDGAKEIALSVVS--GINSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 82 tQeeVYe~~v~plV~svL~--G~N~tIfAYGqTGSGKTyTM~ 121 (960)
.|+++.+. ...++..... +....++-||+.|+|||+...
T Consensus 8 G~~~~~~~-l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 8 GQEKVKEQ-LQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred CHHHHHHH-HHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 35555554 3333333222 222346779999999998764
No 176
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=40.47 E-value=36 Score=39.71 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=19.1
Q ss_pred CCCCEEEEEecCCCCCCcccc
Q 002139 100 SGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM 120 (960)
.|+.-+|+..|+.|+|||.-+
T Consensus 20 ~Gi~f~im~~G~sG~GKttfi 40 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFI 40 (373)
T ss_pred cCCceEEEEecCCCCchhHHH
Confidence 699999999999999999754
No 177
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=39.69 E-value=36 Score=37.42 Aligned_cols=43 Identities=19% Similarity=0.296 Sum_probs=27.4
Q ss_pred ecCeeeCCCCChHHHHHhhHHHHHHHHhC-C-CCEEEEEecCCCCCCccc
Q 002139 72 TFDRVFWGDCSTTQVYEDGAKEIALSVVS-G-INSSIFAYGQTSSGKTYT 119 (960)
Q Consensus 72 ~FD~VF~~~atQeeVYe~~v~plV~svL~-G-~N~tIfAYGqTGSGKTyT 119 (960)
+||.+. .|+.+-.. .+.++..+.. | .-..++-||+.|.|||+.
T Consensus 22 ~L~efi----GQ~~l~~~-l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 22 SLDEFI----GQEHLKGN-LKILIRAAKKRGEALDHMLFYGPPGLGKTTL 66 (233)
T ss_dssp SCCCS-----S-HHHHHH-HHHHHHHHHCTTS---EEEEESSTTSSHHHH
T ss_pred CHHHcc----CcHHHHhh-hHHHHHHHHhcCCCcceEEEECCCccchhHH
Confidence 455444 58888876 6667777654 2 334688899999999753
No 178
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=39.67 E-value=29 Score=39.84 Aligned_cols=73 Identities=21% Similarity=0.267 Sum_probs=49.1
Q ss_pred CceeecCeeeCCCCChHHHHHhhHHHHHHHHhC---CCCE--EEEEecCCCCCCcccc------C---------------
Q 002139 68 PSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVS---GINS--SIFAYGQTSSGKTYTM------T--------------- 121 (960)
Q Consensus 68 ~~~F~FD~VF~~~atQeeVYe~~v~plV~svL~---G~N~--tIfAYGqTGSGKTyTM------~--------------- 121 (960)
+..|+||+|-+-..--.++-+.+.-|++...+- |+.. -+.-||+.|+|||+-. +
T Consensus 126 ~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~k 205 (388)
T KOG0651|consen 126 PRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDK 205 (388)
T ss_pred ccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhh
Confidence 467899998776544445556667777765442 3332 4788999999999854 2
Q ss_pred --CCchhhHHHHHHHHHhccc
Q 002139 122 --GITECTVADIFDYIHRHEE 140 (960)
Q Consensus 122 --GIi~rai~dLF~~I~~~~~ 140 (960)
|-..|.+++.|.+...+..
T Consensus 206 yiGEsaRlIRemf~yA~~~~p 226 (388)
T KOG0651|consen 206 YIGESARLIRDMFRYAREVIP 226 (388)
T ss_pred hcccHHHHHHHHHHHHhhhCc
Confidence 3334678888888776553
No 179
>PRK04195 replication factor C large subunit; Provisional
Probab=39.59 E-value=24 Score=42.30 Aligned_cols=30 Identities=27% Similarity=0.372 Sum_probs=21.8
Q ss_pred HHHHHHHHhCCC-CEEEEEecCCCCCCcccc
Q 002139 91 AKEIALSVVSGI-NSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 91 v~plV~svL~G~-N~tIfAYGqTGSGKTyTM 120 (960)
+..++.....|. ...++-||++|+|||++.
T Consensus 26 l~~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 26 LREWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 444455555554 557888999999999886
No 180
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=39.58 E-value=23 Score=44.35 Aligned_cols=34 Identities=26% Similarity=0.226 Sum_probs=24.1
Q ss_pred hHHHHHHHHhC-----CCCEEEEEecCCCCCCccccCCCc
Q 002139 90 GAKEIALSVVS-----GINSSIFAYGQTSSGKTYTMTGIT 124 (960)
Q Consensus 90 ~v~plV~svL~-----G~N~tIfAYGqTGSGKTyTM~GIi 124 (960)
++..+++++.. |.+..|+.. +||||||+||..++
T Consensus 246 av~~~~~~~~~~~~~~~~~~gli~~-~TGsGKT~t~~~la 284 (667)
T TIGR00348 246 AVKKIVESITRKTWGKDERGGLIWH-TQGSGKTLTMLFAA 284 (667)
T ss_pred HHHHHHHHHHhcccCCCCceeEEEE-ecCCCccHHHHHHH
Confidence 46677777766 345555444 89999999997643
No 181
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=39.43 E-value=18 Score=47.48 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=18.2
Q ss_pred EEEEEecCCCCCCcccc-------CCCchhh
Q 002139 104 SSIFAYGQTSSGKTYTM-------TGITECT 127 (960)
Q Consensus 104 ~tIfAYGqTGSGKTyTM-------~GIi~ra 127 (960)
+.+.-+|+||||||..+ +|-.|+.
T Consensus 27 gl~~I~G~nGaGKSTildAI~~aL~G~~~~~ 57 (1042)
T TIGR00618 27 PIFLICGKTGAGKTTLLDAITYALYGKLPRR 57 (1042)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcCCCCCC
Confidence 45567899999999776 5766653
No 182
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=39.41 E-value=20 Score=43.77 Aligned_cols=33 Identities=30% Similarity=0.500 Sum_probs=23.7
Q ss_pred EEEEecCCCCCCcccc------------CCCchhhHHHHHHHHHh
Q 002139 105 SIFAYGQTSSGKTYTM------------TGITECTVADIFDYIHR 137 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM------------~GIi~rai~dLF~~I~~ 137 (960)
.||..|+|.|||||-- .|-+-....++|+.+..
T Consensus 193 Ii~H~GPTNSGKTy~ALqrl~~aksGvycGPLrLLA~EV~~r~na 237 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRALQRLKSAKSGVYCGPLRLLAHEVYDRLNA 237 (700)
T ss_pred EEEEeCCCCCchhHHHHHHHhhhccceecchHHHHHHHHHHHhhh
Confidence 4899999999999975 24444455667776654
No 183
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=39.24 E-value=20 Score=42.58 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=18.1
Q ss_pred HHHHHhCCCCEEEEEecCCCCCCccc
Q 002139 94 IALSVVSGINSSIFAYGQTSSGKTYT 119 (960)
Q Consensus 94 lV~svL~G~N~tIfAYGqTGSGKTyT 119 (960)
.+..++.|.++ ++..+||||||.+
T Consensus 19 ai~~~l~g~dv--lv~apTGsGKTl~ 42 (470)
T TIGR00614 19 VINAVLLGRDC--FVVMPTGGGKSLC 42 (470)
T ss_pred HHHHHHcCCCE--EEEcCCCCcHhHH
Confidence 44567789975 5557999999965
No 184
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=39.20 E-value=1.2e+02 Score=33.18 Aligned_cols=61 Identities=21% Similarity=0.251 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 002139 363 KHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGC 429 (960)
Q Consensus 363 k~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~ek~~~i~~le~ei~el~~q~d~~q~r~~~l~~~~~~ 429 (960)
++++++...++..+.+... +.+........+.++++++++.+..++.++.+...|.++..+
T Consensus 130 ~~~~~~~~~lk~~~~~~~~------~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~ 190 (216)
T KOG1962|consen 130 EKAMKENEALKKQLENSSK------LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEG 190 (216)
T ss_pred HHHHHHHHHHHHhhhcccc------hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666654332 222222333445555566666666666666555555555544
No 185
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=38.80 E-value=64 Score=40.82 Aligned_cols=73 Identities=12% Similarity=0.286 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCC----------c--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002139 359 KALVKHLQKELARLESELRSPAPASS----------T--CDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRM 426 (960)
Q Consensus 359 ~~lik~Lq~Ei~~Le~eL~~~~~~~~----------~--~~~~~~l~ek~~~i~~le~ei~el~~q~d~~q~r~~~l~~~ 426 (960)
...+..|+.+|++|+.+|...+.... + ......|.+...+.+.|+..+.+|..+++.=.+.++.|+++
T Consensus 417 ~~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkr 496 (697)
T PF09726_consen 417 PDAISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKR 496 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566899999999988876654311 0 01112223333333444444444444444444445555555
Q ss_pred hccCC
Q 002139 427 VGCDQ 431 (960)
Q Consensus 427 ~~~~~ 431 (960)
+.+.+
T Consensus 497 L~eE~ 501 (697)
T PF09726_consen 497 LAEER 501 (697)
T ss_pred HHHHH
Confidence 55544
No 186
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=38.79 E-value=26 Score=39.92 Aligned_cols=19 Identities=32% Similarity=0.345 Sum_probs=15.4
Q ss_pred CEEEEEecCCCCCCccccC
Q 002139 103 NSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~ 121 (960)
...|.-.|++|+|||+|+.
T Consensus 114 ~~vi~lvGpnGsGKTTt~~ 132 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIG 132 (318)
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 3466777999999999974
No 187
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=38.59 E-value=53 Score=41.56 Aligned_cols=52 Identities=15% Similarity=0.199 Sum_probs=29.5
Q ss_pred eeecCeeeCCCCChHHHHHhhHHHHHH-HHhC--C--CCEEEEEecCCCCCCccccC
Q 002139 70 AYTFDRVFWGDCSTTQVYEDGAKEIAL-SVVS--G--INSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 70 ~F~FD~VF~~~atQeeVYe~~v~plV~-svL~--G--~N~tIfAYGqTGSGKTyTM~ 121 (960)
.++||.|-+.+..-+.+.+.+..|+-. .+++ | ..-.|+-||++|+|||+.+.
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~lar 230 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAK 230 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHH
Confidence 567777765443333444333333221 1222 2 22468899999999998753
No 188
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=38.44 E-value=26 Score=43.94 Aligned_cols=36 Identities=25% Similarity=0.325 Sum_probs=26.4
Q ss_pred HHHHHhhHHHHHHHHh-CCCCEEEEEecCCCCCCcccc
Q 002139 84 TQVYEDGAKEIALSVV-SGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 84 eeVYe~~v~plV~svL-~G~N~tIfAYGqTGSGKTyTM 120 (960)
-.||.- +......++ .|.|.||+.-|.+|||||.|.
T Consensus 73 PHifav-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T smart00242 73 PHVFAI-ADNAYRNMLNDKENQSIIISGESGAGKTENT 109 (677)
T ss_pred CCHHHH-HHHHHHHHHhcCCCceEEEecCCCCcchHHH
Confidence 446754 333333333 699999999999999999986
No 189
>PF05729 NACHT: NACHT domain
Probab=38.31 E-value=15 Score=35.79 Aligned_cols=18 Identities=22% Similarity=0.433 Sum_probs=15.0
Q ss_pred EEEEecCCCCCCccccCC
Q 002139 105 SIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM~G 122 (960)
.++-+|..|+|||..|..
T Consensus 2 ~l~I~G~~G~GKStll~~ 19 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRK 19 (166)
T ss_pred EEEEECCCCCChHHHHHH
Confidence 467899999999998743
No 190
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=37.95 E-value=31 Score=40.19 Aligned_cols=47 Identities=19% Similarity=0.293 Sum_probs=32.3
Q ss_pred HHHHHHhCCCCEEEEEecCCCCCCccccCCCchhhHHHHHHHHHhcccccEEEEee
Q 002139 93 EIALSVVSGINSSIFAYGQTSSGKTYTMTGITECTVADIFDYIHRHEERAFVLKFS 148 (960)
Q Consensus 93 plV~svL~G~N~tIfAYGqTGSGKTyTM~GIi~rai~dLF~~I~~~~~~~f~V~vS 148 (960)
..|..+|+|.+| +....||||||..+.+ -||+.+.+++...|.+-++
T Consensus 36 ~cIpkILeGrdc--ig~AkTGsGKT~AFaL-------Pil~rLsedP~giFalvlT 82 (442)
T KOG0340|consen 36 ACIPKILEGRDC--IGCAKTGSGKTAAFAL-------PILNRLSEDPYGIFALVLT 82 (442)
T ss_pred hhhHHHhccccc--ccccccCCCcchhhhH-------HHHHhhccCCCcceEEEec
Confidence 345677899997 4566999999988643 2556666666656655555
No 191
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.92 E-value=70 Score=35.51 Aligned_cols=62 Identities=26% Similarity=0.364 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHH------HHHHHHHH-HHHHHHHHHHHHHHhccC
Q 002139 360 ALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMER------EIRELTKQ-RDLAQSRVEDLLRMVGCD 430 (960)
Q Consensus 360 ~lik~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~ek~~~i~~le~------ei~el~~q-~d~~q~r~~~l~~~~~~~ 430 (960)
..+..|++||++|+..|... ..++-+++.+|-.|.. +++.+-++ .++++.++++.++.+...
T Consensus 225 V~i~~lkeeia~Lkk~L~qk---------dq~ileKdkqisnLKad~e~~~~~ek~Hke~v~qL~~k~~~~lk~~a~l 293 (305)
T KOG3990|consen 225 VKIQKLKEEIARLKKLLHQK---------DQLILEKDKQISNLKADKEYQKELEKKHKERVQQLQKKKEESLKAIAQL 293 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhh---------HHHHHhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999988543 2234455555544432 23333222 455556666666665544
No 192
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=37.63 E-value=16 Score=42.21 Aligned_cols=21 Identities=19% Similarity=0.381 Sum_probs=16.3
Q ss_pred EEEecCCCCCCccccCCCchhhH
Q 002139 106 IFAYGQTSSGKTYTMTGITECTV 128 (960)
Q Consensus 106 IfAYGqTGSGKTyTM~GIi~rai 128 (960)
++.+|+||||||+++ ++|..+
T Consensus 2 ~lv~g~tGsGKt~~~--viP~ll 22 (384)
T cd01126 2 VLVFAPTRSGKGVGF--VIPNLL 22 (384)
T ss_pred eeEecCCCCCCccEE--Eccchh
Confidence 578899999999987 355544
No 193
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=37.52 E-value=14 Score=35.73 Aligned_cols=18 Identities=39% Similarity=0.586 Sum_probs=14.4
Q ss_pred EEEecCCCCCCccccCCC
Q 002139 106 IFAYGQTSSGKTYTMTGI 123 (960)
Q Consensus 106 IfAYGqTGSGKTyTM~GI 123 (960)
++-||++|+|||+.+..+
T Consensus 2 ~~i~G~~G~GKT~l~~~i 19 (165)
T cd01120 2 ILVFGPTGSGKTTLALQL 19 (165)
T ss_pred eeEeCCCCCCHHHHHHHH
Confidence 467899999999987543
No 194
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=37.52 E-value=15 Score=42.16 Aligned_cols=17 Identities=47% Similarity=0.569 Sum_probs=14.0
Q ss_pred EEEEEecCCCCCCcccc
Q 002139 104 SSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (960)
+-|+..|+||||||+.-
T Consensus 98 SNILLiGPTGsGKTlLA 114 (408)
T COG1219 98 SNILLIGPTGSGKTLLA 114 (408)
T ss_pred ccEEEECCCCCcHHHHH
Confidence 45788999999999743
No 195
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=37.13 E-value=20 Score=39.93 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=18.2
Q ss_pred HHHHHhCCCCEEEEEecCCCCCCcccc
Q 002139 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 94 lV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
+++.++.. +--++-+|++|+|||-++
T Consensus 25 ll~~l~~~-~~pvLl~G~~GtGKT~li 50 (272)
T PF12775_consen 25 LLDLLLSN-GRPVLLVGPSGTGKTSLI 50 (272)
T ss_dssp HHHHHHHC-TEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHc-CCcEEEECCCCCchhHHH
Confidence 33333433 556788999999999875
No 196
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=37.12 E-value=1.6e+02 Score=33.76 Aligned_cols=40 Identities=15% Similarity=0.223 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 002139 391 LLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGCD 430 (960)
Q Consensus 391 ~l~ek~~~i~~le~ei~el~~q~d~~q~r~~~l~~~~~~~ 430 (960)
.+.+...+++.++.+++++..++..++++++++.+.....
T Consensus 231 ~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~ 270 (325)
T PF08317_consen 231 ELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREEC 270 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555556666666666666666677776666665543
No 197
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=37.06 E-value=12 Score=41.92 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=18.0
Q ss_pred CCCCEEEEEecCCCCCCccc
Q 002139 100 SGINSSIFAYGQTSSGKTYT 119 (960)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyT 119 (960)
.|++-+|+..|++|+|||.-
T Consensus 1 kg~~fnImVvG~sG~GKTTF 20 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTTF 20 (281)
T ss_dssp HEEEEEEEEEECTTSSHHHH
T ss_pred CCceEEEEEECCCCCCHHHH
Confidence 48899999999999999874
No 198
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=36.96 E-value=24 Score=39.97 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=21.2
Q ss_pred HHhCCCCEEEEEecCCCCCCccccCC
Q 002139 97 SVVSGINSSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 97 svL~G~N~tIfAYGqTGSGKTyTM~G 122 (960)
.--..-+.-++-||+.|||||.+|.-
T Consensus 17 ~~~~~~~~r~vL~G~~GsGKS~~L~q 42 (309)
T PF10236_consen 17 ADKSSKNNRYVLTGERGSGKSVLLAQ 42 (309)
T ss_pred hcccCCceEEEEECCCCCCHHHHHHH
Confidence 33457778899999999999999854
No 199
>PRK14974 cell division protein FtsY; Provisional
Probab=36.95 E-value=39 Score=38.92 Aligned_cols=20 Identities=30% Similarity=0.338 Sum_probs=16.8
Q ss_pred CEEEEEecCCCCCCccccCC
Q 002139 103 NSSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~G 122 (960)
...|.-.|.+|+|||+|+.-
T Consensus 140 ~~vi~~~G~~GvGKTTtiak 159 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAK 159 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHH
Confidence 46788899999999999743
No 200
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=36.88 E-value=36 Score=39.66 Aligned_cols=46 Identities=22% Similarity=0.295 Sum_probs=28.0
Q ss_pred eee-cC-eeeCCCCChHHHHHhhHHHHHHHHhCC---CCEEEEEecCCCCCCcccc
Q 002139 70 AYT-FD-RVFWGDCSTTQVYEDGAKEIALSVVSG---INSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 70 ~F~-FD-~VF~~~atQeeVYe~~v~plV~svL~G---~N~tIfAYGqTGSGKTyTM 120 (960)
.|. || .||+. ++.-+..+.- +.....| .+-.+.-.|++|||||...
T Consensus 45 ~y~~F~~~~~G~----~~~i~~lv~~-l~~~a~g~~~~r~il~L~GPPGsGKStla 95 (361)
T smart00763 45 RYRFFDHDFFGM----EEAIERFVNY-FKSAAQGLEERKQILYLLGPVGGGKSSLV 95 (361)
T ss_pred eccccchhccCc----HHHHHHHHHH-HHHHHhcCCCCCcEEEEECCCCCCHHHHH
Confidence 454 45 78874 4444444432 3333343 4566788899999999754
No 201
>PRK10536 hypothetical protein; Provisional
Probab=36.15 E-value=22 Score=39.66 Aligned_cols=41 Identities=20% Similarity=0.311 Sum_probs=26.3
Q ss_pred eeecCeeeCCCCChHHHHHhhHHHHHHHHhCCCCEEEEEecCCCCCCcccc
Q 002139 70 AYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 70 ~F~FD~VF~~~atQeeVYe~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
.|.|-.|-+-+..|..... .+.+ +.-++..|+.||||||..
T Consensus 51 ~~~~~~i~p~n~~Q~~~l~--------al~~--~~lV~i~G~aGTGKT~La 91 (262)
T PRK10536 51 SRDTSPILARNEAQAHYLK--------AIES--KQLIFATGEAGCGKTWIS 91 (262)
T ss_pred hcCCccccCCCHHHHHHHH--------HHhc--CCeEEEECCCCCCHHHHH
Confidence 4566666555544444332 2233 348899999999999986
No 202
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=36.07 E-value=19 Score=40.73 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=15.2
Q ss_pred EEEEEecCCCCCCccccC
Q 002139 104 SSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 104 ~tIfAYGqTGSGKTyTM~ 121 (960)
..++-||++|+|||+...
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 357789999999999875
No 203
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.91 E-value=2.8e+02 Score=25.32 Aligned_cols=58 Identities=24% Similarity=0.287 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002139 361 LVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMV 427 (960)
Q Consensus 361 lik~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~ek~~~i~~le~ei~el~~q~d~~q~r~~~l~~~~ 427 (960)
.|.-||-||..|+.+-.+. ...........+.|+.+...|+.+-..-|.|+..|+-++
T Consensus 19 TI~LLQmEieELKEknn~l---------~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGkm 76 (79)
T COG3074 19 TITLLQMEIEELKEKNNSL---------SQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGKM 76 (79)
T ss_pred HHHHHHHHHHHHHHHhhHh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3566777888877653221 112222334566788888888888888888887776554
No 204
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=35.90 E-value=24 Score=43.05 Aligned_cols=41 Identities=20% Similarity=0.327 Sum_probs=28.0
Q ss_pred eecCeeeCCCCChHHHHHhhHHHHHHHHhCCCCEEEEEecCCCCCCccc
Q 002139 71 YTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYT 119 (960)
Q Consensus 71 F~FD~VF~~~atQeeVYe~~v~plV~svL~G~N~tIfAYGqTGSGKTyT 119 (960)
.+|+.+++.+.. ++.+...+..+....|+-||++|+|||+.
T Consensus 62 ~~f~~iiGqs~~--------i~~l~~al~~~~~~~vLi~Ge~GtGKt~l 102 (531)
T TIGR02902 62 KSFDEIIGQEEG--------IKALKAALCGPNPQHVIIYGPPGVGKTAA 102 (531)
T ss_pred CCHHHeeCcHHH--------HHHHHHHHhCCCCceEEEECCCCCCHHHH
Confidence 468888875422 22333334566667788899999999875
No 205
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=35.83 E-value=88 Score=34.04 Aligned_cols=36 Identities=28% Similarity=0.450 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002139 389 VALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLL 424 (960)
Q Consensus 389 ~~~l~ek~~~i~~le~ei~el~~q~d~~q~r~~~l~ 424 (960)
.+.+++++.+|..|.+-++...++||.|+.+++.|.
T Consensus 25 ~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 25 NEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677788888888888999999999999999877
No 206
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=35.82 E-value=40 Score=40.22 Aligned_cols=20 Identities=35% Similarity=0.391 Sum_probs=16.7
Q ss_pred CEEEEEecCCCCCCccccCC
Q 002139 103 NSSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~G 122 (960)
...|+-+|.+|+|||+|..-
T Consensus 95 p~vI~lvG~~GsGKTTtaak 114 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAK 114 (437)
T ss_pred CeEEEEECCCCCcHHHHHHH
Confidence 46788899999999999744
No 207
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=35.57 E-value=22 Score=44.24 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=19.2
Q ss_pred HHHHHhCCCCEEEEEecCCCCCCcccc
Q 002139 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 94 lV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
.+..++.|.+ |++.+|||||||.+.
T Consensus 36 ai~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 36 CIPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHHcCCC--EEEEcCCCCcHHHHH
Confidence 3455678877 677889999999764
No 208
>PRK10865 protein disaggregation chaperone; Provisional
Probab=35.57 E-value=35 Score=44.01 Aligned_cols=45 Identities=22% Similarity=0.220 Sum_probs=27.0
Q ss_pred eecCeeeCCCCChHHHHHhhHHHHHHHHhCCCC------EEEEEecCCCCCCcccc
Q 002139 71 YTFDRVFWGDCSTTQVYEDGAKEIALSVVSGIN------SSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 71 F~FD~VF~~~atQeeVYe~~v~plV~svL~G~N------~tIfAYGqTGSGKTyTM 120 (960)
.-+.+|+|.+ ..-..+... |..+..|.. +.++-+|++|+|||++.
T Consensus 565 ~l~~~viGQ~----~ai~~l~~~-i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 565 ELHHRVIGQN----EAVEAVSNA-IRRSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615 (857)
T ss_pred HhCCeEeCCH----HHHHHHHHH-HHHHHhcccCCCCCCceEEEECCCCCCHHHHH
Confidence 4467788654 333332222 233333332 57788899999999976
No 209
>PRK11637 AmiB activator; Provisional
Probab=35.24 E-value=93 Score=36.74 Aligned_cols=34 Identities=15% Similarity=0.261 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 002139 396 DLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGC 429 (960)
Q Consensus 396 ~~~i~~le~ei~el~~q~d~~q~r~~~l~~~~~~ 429 (960)
..+|..++.+|.+++.+++.++.++.++.+.+..
T Consensus 88 ~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~ 121 (428)
T PRK11637 88 SRKLRETQNTLNQLNKQIDELNASIAKLEQQQAA 121 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555555554443
No 210
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=34.99 E-value=33 Score=37.73 Aligned_cols=28 Identities=21% Similarity=0.186 Sum_probs=19.4
Q ss_pred HHHHHHHHhCCCCEEEEEecCCCCCCcccc
Q 002139 91 AKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 91 v~plV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
...++..+..|.+. +-+|++|+|||...
T Consensus 11 ~~~~l~~l~~g~~v--LL~G~~GtGKT~lA 38 (262)
T TIGR02640 11 TSRALRYLKSGYPV--HLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHHHhcCCeE--EEEcCCCCCHHHHH
Confidence 34455555566655 45899999999865
No 211
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=34.77 E-value=34 Score=43.02 Aligned_cols=35 Identities=29% Similarity=0.424 Sum_probs=25.6
Q ss_pred HHHHhhHHHHHHHHh-CCCCEEEEEecCCCCCCcccc
Q 002139 85 QVYEDGAKEIALSVV-SGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 85 eVYe~~v~plV~svL-~G~N~tIfAYGqTGSGKTyTM 120 (960)
.||.- +......++ .|.|.||+.-|.+|||||.|.
T Consensus 70 Hifai-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 105 (674)
T cd01384 70 HVFAI-ADAAYRAMINEGKSQSILVSGESGAGKTETT 105 (674)
T ss_pred CHHHH-HHHHHHHHHHcCCCceEEEECCCCCCchhHH
Confidence 36644 333333333 699999999999999999986
No 212
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=34.74 E-value=17 Score=39.52 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=17.4
Q ss_pred CEEEEEecCCCCCCccccCCC
Q 002139 103 NSSIFAYGQTSSGKTYTMTGI 123 (960)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~GI 123 (960)
...++-||..|+|||++..++
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~ 32 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYL 32 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhc
Confidence 456999999999999987554
No 213
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=34.66 E-value=18 Score=36.50 Aligned_cols=17 Identities=29% Similarity=0.466 Sum_probs=14.3
Q ss_pred EEEEEecCCCCCCcccc
Q 002139 104 SSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (960)
+..+-||++|+|||+.|
T Consensus 20 g~~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTIL 36 (202)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 45568899999999887
No 214
>PHA02244 ATPase-like protein
Probab=34.48 E-value=36 Score=39.91 Aligned_cols=51 Identities=20% Similarity=0.156 Sum_probs=29.0
Q ss_pred CCCceeecCeeeCCCCChHHHHHhhHHHHHHHHhCCCCEEEEEecCCCCCCccccC
Q 002139 66 TFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 66 ~~~~~F~FD~VF~~~atQeeVYe~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~ 121 (960)
++.....||.-|-... ..+......+...+-.|.+. +-+|+||+|||+...
T Consensus 87 ~~~~l~~~d~~~ig~s---p~~~~~~~ri~r~l~~~~PV--LL~GppGtGKTtLA~ 137 (383)
T PHA02244 87 PAGDISGIDTTKIASN---PTFHYETADIAKIVNANIPV--FLKGGAGSGKNHIAE 137 (383)
T ss_pred CcCchhhCCCcccCCC---HHHHHHHHHHHHHHhcCCCE--EEECCCCCCHHHHHH
Confidence 3334455665554332 33333333444444456665 448999999998763
No 215
>PRK04406 hypothetical protein; Provisional
Probab=34.20 E-value=3.7e+02 Score=24.61 Aligned_cols=51 Identities=14% Similarity=0.262 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002139 362 VKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVG 428 (960)
Q Consensus 362 ik~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~ek~~~i~~le~ei~el~~q~d~~q~r~~~l~~~~~ 428 (960)
+..+...|..|+..+.- .+.-|+.|.+.+-+.+++++.++.++..|.+.+.
T Consensus 6 ~~~le~Ri~~LE~~lAf----------------QE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 6 IEQLEERINDLECQLAF----------------QEQTIEELNDALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777776522 2233444444445555555555555555544443
No 216
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=34.19 E-value=16 Score=41.78 Aligned_cols=17 Identities=35% Similarity=0.473 Sum_probs=14.0
Q ss_pred EEEEecCCCCCCccccC
Q 002139 105 SIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM~ 121 (960)
....||+|||||++-+.
T Consensus 89 I~~VYGPTG~GKSqLlR 105 (369)
T PF02456_consen 89 IGVVYGPTGSGKSQLLR 105 (369)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 34669999999999883
No 217
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=34.15 E-value=1.2e+02 Score=32.34 Aligned_cols=69 Identities=22% Similarity=0.319 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhc
Q 002139 358 DKALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTK--------QRDLAQSRVEDLLRMVG 428 (960)
Q Consensus 358 ~~~lik~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~ek~~~i~~le~ei~el~~--------q~d~~q~r~~~l~~~~~ 428 (960)
.+.++.....||..|+..|+..... ..+....+++++.++.+++.++..|++ +++.++.++..+...+.
T Consensus 59 Lpqll~~h~eEvr~Lr~~LR~~q~~--~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~ 135 (194)
T PF15619_consen 59 LPQLLQRHNEEVRVLRERLRKSQEQ--ERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQ 135 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHH
Confidence 4557778888888888888764332 223345566667777766666655543 34555555555544443
No 218
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=34.11 E-value=24 Score=36.74 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=18.8
Q ss_pred HHHhCCC---CEEEEEecCCCCCCcccc
Q 002139 96 LSVVSGI---NSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 96 ~svL~G~---N~tIfAYGqTGSGKTyTM 120 (960)
+.++.|- ...+.-||++|||||...
T Consensus 2 D~~l~GGi~~g~i~~i~G~~GsGKT~l~ 29 (209)
T TIGR02237 2 DELLGGGVERGTITQIYGPPGSGKTNIC 29 (209)
T ss_pred hhhhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 3445544 678899999999999764
No 219
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=33.81 E-value=2.1e+02 Score=28.99 Aligned_cols=62 Identities=21% Similarity=0.309 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhcCCCCCCC--chhHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002139 366 QKELARLESELRSPAPASS--TCDYVAL---------LRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMV 427 (960)
Q Consensus 366 q~Ei~~Le~eL~~~~~~~~--~~~~~~~---------l~ek~~~i~~le~ei~el~~q~d~~q~r~~~l~~~~ 427 (960)
++||-+||..-+..++.+- +|-.... -.+...++++|..++.++..++|....+++.|..-.
T Consensus 46 reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~~ 118 (135)
T KOG4196|consen 46 REEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQNSA 118 (135)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5778888876655544321 2222111 112234566777777788888888888887776643
No 220
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=33.73 E-value=39 Score=42.50 Aligned_cols=35 Identities=31% Similarity=0.409 Sum_probs=26.6
Q ss_pred HHHHhhHHHHHHHHh-CCCCEEEEEecCCCCCCcccc
Q 002139 85 QVYEDGAKEIALSVV-SGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 85 eVYe~~v~plV~svL-~G~N~tIfAYGqTGSGKTyTM 120 (960)
.||.- +......++ .|.|-||+.-|.+|||||.|.
T Consensus 74 Hifai-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T cd01383 74 HVYAI-ADTAYNEMMRDEVNQSIIISGESGAGKTETA 109 (677)
T ss_pred CHHHH-HHHHHHHHHHcCCCceEEEecCCCCCcchHH
Confidence 46644 444444444 599999999999999999986
No 221
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=33.62 E-value=19 Score=31.69 Aligned_cols=15 Identities=27% Similarity=0.426 Sum_probs=12.6
Q ss_pred EEEecCCCCCCcccc
Q 002139 106 IFAYGQTSSGKTYTM 120 (960)
Q Consensus 106 IfAYGqTGSGKTyTM 120 (960)
.+-+|++|||||..|
T Consensus 26 tli~G~nGsGKSTll 40 (62)
T PF13555_consen 26 TLITGPNGSGKSTLL 40 (62)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999876
No 222
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=33.55 E-value=1.3e+02 Score=33.68 Aligned_cols=83 Identities=22% Similarity=0.233 Sum_probs=42.2
Q ss_pred eEeccCCCcccHHHHHHHHHHHHHhccccccceecccCCHHHHHHHHHHHHHHHHHHhcCCCCCCCchhH--------HH
Q 002139 319 IICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKELARLESELRSPAPASSTCDY--------VA 390 (960)
Q Consensus 319 mI~tISPs~~~~eETlsTLrFAsrAK~Ikn~~~vN~~~s~~~lik~Lq~Ei~~Le~eL~~~~~~~~~~~~--------~~ 390 (960)
.||.+.|.. .+.+-+..|+---. ....-+..|+++|+..+.+|..+.......+. ..
T Consensus 168 ~L~~vYP~~-ga~eki~~Lr~~y~--------------~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~~~~~~~~~ 232 (259)
T PF08657_consen 168 KLCNVYPLP-GAREKIAALRQRYN--------------QLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDDEESEESSE 232 (259)
T ss_pred HHHHhCCCh-HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccc
Confidence 456677765 45555555543311 12334777888888877777654332211100 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002139 391 LLRKKDLQIQKMEREIRELTKQRDLA 416 (960)
Q Consensus 391 ~l~ek~~~i~~le~ei~el~~q~d~~ 416 (960)
....-+..|++-+++|++|+.++..+
T Consensus 233 ~~~~~de~I~rEeeEIreLE~k~~~L 258 (259)
T PF08657_consen 233 DSVDTDEDIRREEEEIRELERKKREL 258 (259)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhc
Confidence 11122444556666666666655543
No 223
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=33.49 E-value=33 Score=41.50 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=19.1
Q ss_pred HHHHHHhCCCCEEEEEecCCCCCCcccc
Q 002139 93 EIALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 93 plV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
..+..++.|.|. ++..+||||||.+.
T Consensus 150 ~aip~il~g~dv--iv~ApTGSGKTlay 175 (518)
T PLN00206 150 QAIPAALSGRSL--LVSADTGSGKTASF 175 (518)
T ss_pred HHHHHHhcCCCE--EEEecCCCCccHHH
Confidence 345567789875 56669999999653
No 224
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=33.48 E-value=27 Score=44.39 Aligned_cols=40 Identities=23% Similarity=0.348 Sum_probs=30.8
Q ss_pred HHH-hhHHHHHHHHhCCCCEEEEEecCCCCCCccccCCCchh
Q 002139 86 VYE-DGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITEC 126 (960)
Q Consensus 86 VYe-~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~GIi~r 126 (960)
-|+ ..+..+++++-+|.+-.+++. .||+|||||-+-|+.+
T Consensus 168 yyQ~~AI~rv~Eaf~~g~~raLlvM-ATGTGKTrTAiaii~r 208 (875)
T COG4096 168 YYQIIAIRRVIEAFSKGQNRALLVM-ATGTGKTRTAIAIIDR 208 (875)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEE-ecCCCcceeHHHHHHH
Confidence 344 367888999999999966655 6999999998765544
No 225
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=33.48 E-value=18 Score=35.57 Aligned_cols=15 Identities=33% Similarity=0.426 Sum_probs=12.6
Q ss_pred EEEecCCCCCCcccc
Q 002139 106 IFAYGQTSSGKTYTM 120 (960)
Q Consensus 106 IfAYGqTGSGKTyTM 120 (960)
|+..|..|||||+..
T Consensus 2 i~l~G~~GsGKST~a 16 (150)
T cd02021 2 IVVMGVSGSGKSTVG 16 (150)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999998763
No 226
>PF13173 AAA_14: AAA domain
Probab=33.36 E-value=19 Score=34.86 Aligned_cols=16 Identities=31% Similarity=0.368 Sum_probs=14.2
Q ss_pred EEEEecCCCCCCcccc
Q 002139 105 SIFAYGQTSSGKTYTM 120 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (960)
.++-+|+.|+|||+.+
T Consensus 4 ~~~l~G~R~vGKTtll 19 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLL 19 (128)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5788999999999986
No 227
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=33.35 E-value=21 Score=39.72 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=18.8
Q ss_pred CCCCEEEEEecCCCCCCcccc
Q 002139 100 SGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM 120 (960)
.|+...|+..|++|+|||..+
T Consensus 1 ~g~~f~I~vvG~sg~GKSTli 21 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTFI 21 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHHH
Confidence 489999999999999999764
No 228
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=33.33 E-value=11 Score=43.94 Aligned_cols=18 Identities=39% Similarity=0.517 Sum_probs=13.0
Q ss_pred EEEEecCCCCCCccccCC
Q 002139 105 SIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM~G 122 (960)
-++..|.||||||.+|..
T Consensus 17 ~~li~G~~GsGKT~~i~~ 34 (386)
T PF10412_consen 17 HILIIGATGSGKTQAIRH 34 (386)
T ss_dssp -EEEEE-TTSSHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHH
Confidence 367889999999986644
No 229
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=33.09 E-value=38 Score=42.73 Aligned_cols=37 Identities=22% Similarity=0.353 Sum_probs=26.7
Q ss_pred HHHHHhhHHHHHHHHh-CCCCEEEEEecCCCCCCccccC
Q 002139 84 TQVYEDGAKEIALSVV-SGINSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 84 eeVYe~~v~plV~svL-~G~N~tIfAYGqTGSGKTyTM~ 121 (960)
-.||.- +......++ .|.|-||+.-|.+|||||.|..
T Consensus 75 PHiy~i-A~~Ay~~m~~~~~~QsIiisGESGAGKTet~K 112 (692)
T cd01385 75 PHIFAI-ADVAYYNMLRKKVNQCIVISGESGSGKTESTN 112 (692)
T ss_pred CCHHHH-HHHHHHHHHhcCCCceEEEecCCCCCchHHHH
Confidence 346643 333344433 6899999999999999999863
No 230
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=33.02 E-value=44 Score=35.78 Aligned_cols=37 Identities=14% Similarity=0.061 Sum_probs=23.1
Q ss_pred HHHHHhhHHHHHHHHhC-CCCEEEEEecCCCCCCcccc
Q 002139 84 TQVYEDGAKEIALSVVS-GINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 84 eeVYe~~v~plV~svL~-G~N~tIfAYGqTGSGKTyTM 120 (960)
..+|..++.-+...+-. +....|.-.|++|||||+.+
T Consensus 13 ~~~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~ 50 (229)
T PRK09270 13 EAVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLA 50 (229)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHH
Confidence 34555555544443333 44556666699999999875
No 231
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=32.90 E-value=15 Score=44.01 Aligned_cols=22 Identities=36% Similarity=0.450 Sum_probs=16.9
Q ss_pred HhCCCCEEEEEecCCCCCCccccC
Q 002139 98 VVSGINSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 98 vL~G~N~tIfAYGqTGSGKTyTM~ 121 (960)
+.+|.+. +|++|||||||+...
T Consensus 108 i~~Grdl--~acAqTGsGKT~aFL 129 (482)
T KOG0335|consen 108 ISGGRDL--MACAQTGSGKTAAFL 129 (482)
T ss_pred eecCCce--EEEccCCCcchHHHH
Confidence 3455554 899999999999873
No 232
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=32.90 E-value=19 Score=42.67 Aligned_cols=19 Identities=32% Similarity=0.419 Sum_probs=15.6
Q ss_pred EEEEecCCCCCCccccCCC
Q 002139 105 SIFAYGQTSSGKTYTMTGI 123 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM~GI 123 (960)
.|+-.|+||+|||+|+..+
T Consensus 223 ~i~~vGptGvGKTTt~~kL 241 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKL 241 (424)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5666799999999998654
No 233
>PRK00131 aroK shikimate kinase; Reviewed
Probab=32.79 E-value=21 Score=35.38 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=14.8
Q ss_pred EEEEEecCCCCCCcccc
Q 002139 104 SSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (960)
-.|+.+|.+|||||+.-
T Consensus 5 ~~i~l~G~~GsGKstla 21 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIG 21 (175)
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 37899999999999875
No 234
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=32.72 E-value=2.9e+02 Score=26.04 Aligned_cols=68 Identities=21% Similarity=0.218 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCC-CchhHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002139 360 ALVKHLQKELARLESELRSPAPAS-STCDYVALLRKK------------DLQIQKMEREIRELTKQRDLAQSRVEDLLRM 426 (960)
Q Consensus 360 ~lik~Lq~Ei~~Le~eL~~~~~~~-~~~~~~~~l~ek------------~~~i~~le~ei~el~~q~d~~q~r~~~l~~~ 426 (960)
.-+..|+.++..|+..++...... ....+ ..|... ..+.+.+..++..|++....++.....|.++
T Consensus 19 ~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~-~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~ 97 (100)
T PF01486_consen 19 QEIAKLRKENESLQKELRHLMGEDLESLSL-KELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQK 97 (100)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccccch-HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677888888888776654321 11111 111111 2233456667777777766666666666665
Q ss_pred hc
Q 002139 427 VG 428 (960)
Q Consensus 427 ~~ 428 (960)
+.
T Consensus 98 ~~ 99 (100)
T PF01486_consen 98 IE 99 (100)
T ss_pred hc
Confidence 53
No 235
>CHL00195 ycf46 Ycf46; Provisional
Probab=32.69 E-value=28 Score=42.05 Aligned_cols=17 Identities=24% Similarity=0.440 Sum_probs=15.2
Q ss_pred EEEEEecCCCCCCcccc
Q 002139 104 SSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (960)
-.|+-||+.|+|||++.
T Consensus 260 kGILL~GPpGTGKTllA 276 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTA 276 (489)
T ss_pred ceEEEECCCCCcHHHHH
Confidence 46999999999999876
No 236
>PRK06696 uridine kinase; Validated
Probab=32.69 E-value=42 Score=35.77 Aligned_cols=30 Identities=30% Similarity=0.218 Sum_probs=20.1
Q ss_pred HHHHHHHHh---CCCCEEEEEecCCCCCCcccc
Q 002139 91 AKEIALSVV---SGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 91 v~plV~svL---~G~N~tIfAYGqTGSGKTyTM 120 (960)
+..+++.++ .+....|.--|.+|||||+..
T Consensus 7 ~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA 39 (223)
T PRK06696 7 IKELAEHILTLNLTRPLRVAIDGITASGKTTFA 39 (223)
T ss_pred HHHHHHHHHHhCCCCceEEEEECCCCCCHHHHH
Confidence 334444443 455666777799999999865
No 237
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=32.68 E-value=39 Score=42.51 Aligned_cols=35 Identities=23% Similarity=0.316 Sum_probs=26.0
Q ss_pred HHHHhhHHHHHHHHh-CCCCEEEEEecCCCCCCcccc
Q 002139 85 QVYEDGAKEIALSVV-SGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 85 eVYe~~v~plV~svL-~G~N~tIfAYGqTGSGKTyTM 120 (960)
.||.- +......++ .|.|-||+.-|.+|||||.|.
T Consensus 68 Hifai-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (674)
T cd01378 68 HIYAL-ADNAYRSMKSENENQCVIISGESGAGKTEAA 103 (674)
T ss_pred CHHHH-HHHHHHHHHHcCCCceEEEEcCCCCCcchHH
Confidence 36644 333334444 699999999999999999986
No 238
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=32.50 E-value=28 Score=42.78 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=18.6
Q ss_pred HHHHhCCCCEEEEEecCCCCCCcccc
Q 002139 95 ALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 95 V~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
+..+++|.|. ++.++||||||.+.
T Consensus 40 ip~~l~G~Dv--i~~ApTGSGKTlaf 63 (572)
T PRK04537 40 LPVALPGGDV--AGQAQTGTGKTLAF 63 (572)
T ss_pred HHHHhCCCCE--EEEcCCCCcHHHHH
Confidence 4567899984 55779999999764
No 239
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=32.43 E-value=26 Score=41.62 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=19.9
Q ss_pred HHHHHHhCCCCEEEEEecCCCCCCcccc
Q 002139 93 EIALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 93 plV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
..+..+++|.|+.+ ..+||||||.+.
T Consensus 116 ~ai~~~~~G~dvi~--~apTGSGKTlay 141 (475)
T PRK01297 116 QVLGYTLAGHDAIG--RAQTGTGKTAAF 141 (475)
T ss_pred HHHHHHhCCCCEEE--ECCCCChHHHHH
Confidence 45667889998755 559999999664
No 240
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=32.40 E-value=42 Score=42.23 Aligned_cols=37 Identities=16% Similarity=0.274 Sum_probs=26.8
Q ss_pred HHHHHhhHHHHHHHHh-CCCCEEEEEecCCCCCCccccC
Q 002139 84 TQVYEDGAKEIALSVV-SGINSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 84 eeVYe~~v~plV~svL-~G~N~tIfAYGqTGSGKTyTM~ 121 (960)
-.||.- +......++ .|.|-||+.-|.+|||||.|..
T Consensus 67 PHifav-A~~Ay~~m~~~~~~QsIiisGESGaGKTes~K 104 (671)
T cd01381 67 PHIFAI-SDNAYTNMQREKKNQCIIISGESGAGKTESTK 104 (671)
T ss_pred CCHHHH-HHHHHHHHHHcCCCceEEEEcCCCCCeehHHH
Confidence 346644 333444444 5999999999999999999863
No 241
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=32.34 E-value=21 Score=36.29 Aligned_cols=15 Identities=33% Similarity=0.543 Sum_probs=13.1
Q ss_pred EEEecCCCCCCcccc
Q 002139 106 IFAYGQTSSGKTYTM 120 (960)
Q Consensus 106 IfAYGqTGSGKTyTM 120 (960)
|+.+|..|||||+..
T Consensus 2 i~i~G~pGsGKst~a 16 (183)
T TIGR01359 2 VFVLGGPGSGKGTQC 16 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999864
No 242
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=32.24 E-value=17 Score=44.69 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=16.2
Q ss_pred EEEEecCCCCCCccccCCCch
Q 002139 105 SIFAYGQTSSGKTYTMTGITE 125 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM~GIi~ 125 (960)
..+-.|+.|+|||||+.=|+.
T Consensus 203 l~~I~GPPGTGKT~TlvEiI~ 223 (649)
T KOG1803|consen 203 LLIIHGPPGTGKTRTLVEIIS 223 (649)
T ss_pred ceEeeCCCCCCceeeHHHHHH
Confidence 456679999999999865443
No 243
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=32.18 E-value=40 Score=42.39 Aligned_cols=37 Identities=19% Similarity=0.269 Sum_probs=27.3
Q ss_pred HHHHHhhHHHHHHHHh-CCCCEEEEEecCCCCCCccccC
Q 002139 84 TQVYEDGAKEIALSVV-SGINSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 84 eeVYe~~v~plV~svL-~G~N~tIfAYGqTGSGKTyTM~ 121 (960)
-.||.- +......++ .|.|-||+.-|.+|||||.|..
T Consensus 68 PHifav-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k 105 (677)
T cd01387 68 PHLFAI-ANLAFAKMLDAKQNQCVIISGESGSGKTEATK 105 (677)
T ss_pred CCHHHH-HHHHHHHHHhcCCCceEEEEcCCCCCeehHHH
Confidence 346654 444444444 6999999999999999999863
No 244
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.18 E-value=33 Score=41.30 Aligned_cols=41 Identities=24% Similarity=0.208 Sum_probs=26.2
Q ss_pred ecCeeeCCCCChHHHHHhhHHHHHHHHhCCCC-EEEEEecCCCCCCcccc
Q 002139 72 TFDRVFWGDCSTTQVYEDGAKEIALSVVSGIN-SSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 72 ~FD~VF~~~atQeeVYe~~v~plV~svL~G~N-~tIfAYGqTGSGKTyTM 120 (960)
+||.|.+. +.+ ...+...+-.|.- ..++-||+.|+|||++.
T Consensus 12 ~~~divGq----~~i----~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA 53 (472)
T PRK14962 12 TFSEVVGQ----DHV----KKLIINALKKNSISHAYIFAGPRGTGKTTVA 53 (472)
T ss_pred CHHHccCc----HHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 57777764 333 2333333334443 45889999999999876
No 245
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=31.89 E-value=2.6e+02 Score=28.75 Aligned_cols=13 Identities=8% Similarity=0.194 Sum_probs=8.0
Q ss_pred HHHHHHHHHHhcC
Q 002139 279 LTLSTVIRKLSKG 291 (960)
Q Consensus 279 ~aLg~VI~aLs~~ 291 (960)
.++.+++..|...
T Consensus 33 ~~v~k~Ld~L~~~ 45 (169)
T PF07106_consen 33 TAVQKALDSLVEE 45 (169)
T ss_pred HHHHHHHHHHHhC
Confidence 4466677777653
No 246
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=31.85 E-value=27 Score=42.30 Aligned_cols=45 Identities=22% Similarity=0.245 Sum_probs=31.6
Q ss_pred eeecCeeeCCCCChHHHHHhhHHHHHHHHhCCCCEEEEEecCCCCCCcccc
Q 002139 70 AYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 70 ~F~FD~VF~~~atQeeVYe~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
.|.||.+++.+..-..+.+. +..+ ...+..|+-+|.+||||++.-
T Consensus 192 ~~~~~~liG~s~~~~~~~~~-----~~~~-a~~~~pvli~Ge~GtGK~~lA 236 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQ-----ARVV-ARSNSTVLLRGESGTGKELIA 236 (534)
T ss_pred cCccCceEECCHHHHHHHHH-----HHHH-hCcCCCEEEECCCCccHHHHH
Confidence 37899998876555555543 2222 356888999999999998753
No 247
>PRK04328 hypothetical protein; Provisional
Probab=31.84 E-value=33 Score=37.42 Aligned_cols=28 Identities=14% Similarity=0.163 Sum_probs=22.2
Q ss_pred HHHHHHHhCC---CCEEEEEecCCCCCCccc
Q 002139 92 KEIALSVVSG---INSSIFAYGQTSSGKTYT 119 (960)
Q Consensus 92 ~plV~svL~G---~N~tIfAYGqTGSGKTyT 119 (960)
-+-++.++.| ...+++-+|.+|+|||.-
T Consensus 9 i~~LD~lL~GGip~gs~ili~G~pGsGKT~l 39 (249)
T PRK04328 9 IPGMDEILYGGIPERNVVLLSGGPGTGKSIF 39 (249)
T ss_pred chhHHHHhcCCCcCCcEEEEEcCCCCCHHHH
Confidence 3456778876 588899999999999753
No 248
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=31.65 E-value=3.5e+02 Score=25.27 Aligned_cols=58 Identities=26% Similarity=0.315 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002139 362 VKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVG 428 (960)
Q Consensus 362 ik~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~ek~~~i~~le~ei~el~~q~d~~q~r~~~l~~~~~ 428 (960)
|.-||-||..||.+-.. ...........-..|+.++.+|+.+...-|.|+..|+-++.
T Consensus 20 I~LLqmEieELKekn~~---------L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~ 77 (79)
T PRK15422 20 ITLLQMEIEELKEKNNS---------LSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME 77 (79)
T ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55567777777654211 11111111122345778888888888888888888876654
No 249
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=31.51 E-value=32 Score=36.35 Aligned_cols=29 Identities=24% Similarity=0.268 Sum_probs=22.3
Q ss_pred HHHHHHHhCC---CCEEEEEecCCCCCCcccc
Q 002139 92 KEIALSVVSG---INSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 92 ~plV~svL~G---~N~tIfAYGqTGSGKTyTM 120 (960)
-+-++.++.| ....+.-+|++|||||..+
T Consensus 5 ~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 5 SKALDELLGGGIETGSITEIFGEFGSGKTQLC 36 (235)
T ss_pred chhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence 3456777775 4567889999999999765
No 250
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=31.50 E-value=31 Score=42.90 Aligned_cols=36 Identities=22% Similarity=0.456 Sum_probs=26.6
Q ss_pred EEEEEecCCCCCCcccc-----------------------CCCchhhHHHHHHHHHhcc
Q 002139 104 SSIFAYGQTSSGKTYTM-----------------------TGITECTVADIFDYIHRHE 139 (960)
Q Consensus 104 ~tIfAYGqTGSGKTyTM-----------------------~GIi~rai~dLF~~I~~~~ 139 (960)
-.|+.||+.|+|||.+. .|--++++.++|+......
T Consensus 469 kGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~a 527 (693)
T KOG0730|consen 469 KGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVA 527 (693)
T ss_pred ceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcC
Confidence 46999999999999865 2445667777777766543
No 251
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=31.43 E-value=42 Score=42.38 Aligned_cols=36 Identities=25% Similarity=0.344 Sum_probs=26.8
Q ss_pred HHHHHhhHHHHHHHHh-CCCCEEEEEecCCCCCCcccc
Q 002139 84 TQVYEDGAKEIALSVV-SGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 84 eeVYe~~v~plV~svL-~G~N~tIfAYGqTGSGKTyTM 120 (960)
-.||.- +......++ .|.|-||+.-|.+|||||.+.
T Consensus 72 PHiyai-A~~Ay~~m~~~~~~QsIiiSGESGAGKTes~ 108 (693)
T cd01377 72 PHIFAI-ADNAYRSMLQDRENQSILITGESGAGKTENT 108 (693)
T ss_pred CCHHHH-HHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 347754 444444444 599999999999999999885
No 252
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=31.41 E-value=2e+02 Score=34.43 Aligned_cols=68 Identities=21% Similarity=0.273 Sum_probs=48.7
Q ss_pred cceecccCCHHHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002139 349 KAQVNVVMSDKALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVG 428 (960)
Q Consensus 349 ~~~vN~~~s~~~lik~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~ek~~~i~~le~ei~el~~q~d~~q~r~~~l~~~~~ 428 (960)
+|++......+..+.+|+.+|..|..-+ .++-.+...+|++|.+++.|-+..|..++-++++|.+-+.
T Consensus 558 k~k~e~~~~~k~s~delr~qi~el~~iv------------e~lk~~~~kel~kl~~dleeek~mr~~lemei~~lkka~~ 625 (627)
T KOG4348|consen 558 KAKVETDDVKKNSLDELRAQIIELLCIV------------EALKKDHGKELEKLRKDLEEEKTMRSNLEMEIEKLKKAVL 625 (627)
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHhh
Confidence 3444444444566788888888776543 3333455568999999999999999999999998887653
No 253
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=31.37 E-value=21 Score=43.19 Aligned_cols=19 Identities=32% Similarity=0.296 Sum_probs=15.8
Q ss_pred EEEEEecCCCCCCccccCC
Q 002139 104 SSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 104 ~tIfAYGqTGSGKTyTM~G 122 (960)
..|.-.|+||+|||+|+.-
T Consensus 257 ~Vi~LvGpnGvGKTTTiaK 275 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAK 275 (484)
T ss_pred cEEEEECCCCccHHHHHHH
Confidence 4677789999999999854
No 254
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=31.36 E-value=27 Score=40.17 Aligned_cols=43 Identities=14% Similarity=0.347 Sum_probs=30.6
Q ss_pred eecCeeeCCCCChHHHHHhhHHHHHHHHhCCCCEEEEEecCCCCCCccccC
Q 002139 71 YTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 71 F~FD~VF~~~atQeeVYe~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~ 121 (960)
|.|..|.+ |+++ ..-++..+++..-+-++-.|.+|+|||..+.
T Consensus 1 ~pf~~ivg----q~~~----~~al~~~~~~~~~g~vli~G~~G~gKttl~r 43 (337)
T TIGR02030 1 FPFTAIVG----QDEM----KLALLLNVIDPKIGGVMVMGDRGTGKSTAVR 43 (337)
T ss_pred CCcccccc----HHHH----HHHHHHHhcCCCCCeEEEEcCCCCCHHHHHH
Confidence 45666654 3333 4456667778777778899999999998874
No 255
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=31.29 E-value=35 Score=36.48 Aligned_cols=30 Identities=23% Similarity=0.199 Sum_probs=22.3
Q ss_pred HHHHHHHHhCCC---CEEEEEecCCCCCCcccc
Q 002139 91 AKEIALSVVSGI---NSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 91 v~plV~svL~G~---N~tIfAYGqTGSGKTyTM 120 (960)
+-+-++.++.|- ..+++.+|.+|||||+-.
T Consensus 10 Gi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~ 42 (234)
T PRK06067 10 GNEELDRKLGGGIPFPSLILIEGDHGTGKSVLS 42 (234)
T ss_pred CCHHHHHhhCCCCcCCcEEEEECCCCCChHHHH
Confidence 345567777643 677888899999999765
No 256
>PRK07261 topology modulation protein; Provisional
Probab=31.16 E-value=22 Score=36.49 Aligned_cols=15 Identities=33% Similarity=0.370 Sum_probs=12.7
Q ss_pred EEEecCCCCCCcccc
Q 002139 106 IFAYGQTSSGKTYTM 120 (960)
Q Consensus 106 IfAYGqTGSGKTyTM 120 (960)
|+-.|.+|||||+-.
T Consensus 3 i~i~G~~GsGKSTla 17 (171)
T PRK07261 3 IAIIGYSGSGKSTLA 17 (171)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999998754
No 257
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=31.03 E-value=30 Score=38.88 Aligned_cols=20 Identities=35% Similarity=0.747 Sum_probs=16.1
Q ss_pred CCCE--EEEEecCCCCCCcccc
Q 002139 101 GINS--SIFAYGQTSSGKTYTM 120 (960)
Q Consensus 101 G~N~--tIfAYGqTGSGKTyTM 120 (960)
|+.- .|+.||+.|+|||..-
T Consensus 207 gidppkgvllygppgtgktl~a 228 (435)
T KOG0729|consen 207 GIDPPKGVLLYGPPGTGKTLCA 228 (435)
T ss_pred CCCCCCceEEeCCCCCchhHHH
Confidence 5543 5899999999999765
No 258
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.96 E-value=39 Score=39.01 Aligned_cols=41 Identities=20% Similarity=0.273 Sum_probs=26.1
Q ss_pred ecCeeeCCCCChHHHHHhhHHHHHHHHhCC-CCEEEEEecCCCCCCcccc
Q 002139 72 TFDRVFWGDCSTTQVYEDGAKEIALSVVSG-INSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 72 ~FD~VF~~~atQeeVYe~~v~plV~svL~G-~N~tIfAYGqTGSGKTyTM 120 (960)
+||.|.+ |+.+-+. +...+-.| ..-+++-||+.|+|||++.
T Consensus 14 ~~~~iiG----q~~~~~~----l~~~~~~~~~~h~~L~~Gp~G~GKTtla 55 (363)
T PRK14961 14 YFRDIIG----QKHIVTA----ISNGLSLGRIHHAWLLSGTRGVGKTTIA 55 (363)
T ss_pred chhhccC----hHHHHHH----HHHHHHcCCCCeEEEEecCCCCCHHHHH
Confidence 5666664 4443332 33333344 4557889999999999876
No 259
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=30.90 E-value=33 Score=43.32 Aligned_cols=17 Identities=24% Similarity=0.554 Sum_probs=14.3
Q ss_pred EEEEEecCCCCCCcccc
Q 002139 104 SSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (960)
..|+-||++|+|||+..
T Consensus 488 ~giLL~GppGtGKT~la 504 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLA 504 (733)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 34778999999999876
No 260
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=30.74 E-value=38 Score=43.89 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=16.4
Q ss_pred EEEEecCCCCCCcccc-------CCCchh
Q 002139 105 SIFAYGQTSSGKTYTM-------TGITEC 126 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM-------~GIi~r 126 (960)
..+-+|+||||||.-+ +|-.++
T Consensus 27 i~lI~G~nGsGKSSIldAI~~ALyG~~~~ 55 (908)
T COG0419 27 IFLIVGPNGAGKSSILDAITFALYGKTPR 55 (908)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHcCCCCC
Confidence 3456799999998655 787773
No 261
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=30.71 E-value=33 Score=39.49 Aligned_cols=26 Identities=27% Similarity=0.220 Sum_probs=20.8
Q ss_pred HHHHhCCCCEEEEEecCCCCCCcccc
Q 002139 95 ALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 95 V~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
.+.+.+|-+..++..++||||||...
T Consensus 6 ~~~~~~~~~~~~~i~apTGsGKT~~~ 31 (357)
T TIGR03158 6 FEALQSKDADIIFNTAPTGAGKTLAW 31 (357)
T ss_pred HHHHHcCCCCEEEEECCCCCCHHHHH
Confidence 34567788777888899999999764
No 262
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=30.63 E-value=30 Score=34.99 Aligned_cols=29 Identities=31% Similarity=0.479 Sum_probs=19.8
Q ss_pred EEEEecCCCCCCccccC------CCchhhHHHHHH
Q 002139 105 SIFAYGQTSSGKTYTMT------GITECTVADIFD 133 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM~------GIi~rai~dLF~ 133 (960)
.|+..|+.|||||+... |+......+++.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~ 39 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLR 39 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHH
Confidence 46778999999998762 655444545443
No 263
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=30.57 E-value=22 Score=39.94 Aligned_cols=13 Identities=46% Similarity=0.624 Sum_probs=11.5
Q ss_pred EecCCCCCCcccc
Q 002139 108 AYGQTSSGKTYTM 120 (960)
Q Consensus 108 AYGqTGSGKTyTM 120 (960)
-.|++|||||+||
T Consensus 32 liGpSGsGKTTtL 44 (309)
T COG1125 32 LIGPSGSGKTTTL 44 (309)
T ss_pred EECCCCCcHHHHH
Confidence 3599999999997
No 264
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=30.57 E-value=33 Score=43.51 Aligned_cols=46 Identities=15% Similarity=0.234 Sum_probs=27.6
Q ss_pred ecCeeeCCCCChHHHHHhhHHHHHHHHhCCCCEEEEEecCCCCCCccccCC
Q 002139 72 TFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 72 ~FD~VF~~~atQeeVYe~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~G 122 (960)
+||.+++ |+.+-.. ...+...+-.|.-..++-||++|+|||++...
T Consensus 26 tldd~vG----Qe~ii~~-~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~a 71 (725)
T PRK13341 26 TLEEFVG----QDHILGE-GRLLRRAIKADRVGSLILYGPPGVGKTTLARI 71 (725)
T ss_pred cHHHhcC----cHHHhhh-hHHHHHHHhcCCCceEEEECCCCCCHHHHHHH
Confidence 4566654 3444322 22233333345555788899999999988744
No 265
>PHA02653 RNA helicase NPH-II; Provisional
Probab=30.55 E-value=38 Score=42.62 Aligned_cols=25 Identities=28% Similarity=0.186 Sum_probs=18.5
Q ss_pred HHHHHHhCCCCEEEEEecCCCCCCccc
Q 002139 93 EIALSVVSGINSSIFAYGQTSSGKTYT 119 (960)
Q Consensus 93 plV~svL~G~N~tIfAYGqTGSGKTyT 119 (960)
.++..+++|.+. +..|+||||||..
T Consensus 171 qil~~i~~gkdv--Iv~A~TGSGKTtq 195 (675)
T PHA02653 171 KIFEAWISRKPV--VLTGGTGVGKTSQ 195 (675)
T ss_pred HHHHHHHhCCCE--EEECCCCCCchhH
Confidence 345556677654 7889999999965
No 266
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=30.23 E-value=28 Score=44.16 Aligned_cols=19 Identities=37% Similarity=0.504 Sum_probs=15.6
Q ss_pred CCEEEEEecCCCCCCcccc
Q 002139 102 INSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 102 ~N~tIfAYGqTGSGKTyTM 120 (960)
-|-.++.+|+||||||+-+
T Consensus 270 ~n~vvIIcGeTGsGKTTQv 288 (1172)
T KOG0926|consen 270 ENPVVIICGETGSGKTTQV 288 (1172)
T ss_pred cCCeEEEecCCCCCccccc
Confidence 3556778899999999877
No 267
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=30.09 E-value=2.6e+02 Score=30.71 Aligned_cols=95 Identities=16% Similarity=0.169 Sum_probs=55.3
Q ss_pred cccceEeccCCCcccHHHHHHHHHHHHHhccccccceecccC-----CHHHHHHHHHHHHHHHHHHhcCCCCCCCchhHH
Q 002139 315 ARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVM-----SDKALVKHLQKELARLESELRSPAPASSTCDYV 389 (960)
Q Consensus 315 skT~mI~tISPs~~~~eETlsTLrFAsrAK~Ikn~~~vN~~~-----s~~~lik~Lq~Ei~~Le~eL~~~~~~~~~~~~~ 389 (960)
....|..-|.| ..+++.+..|. ..-.|...-...+.+ +..+-++.++++..+|.+.|....
T Consensus 94 ~~~~ltiRVP~--~~~~~~l~~l~---~~g~v~~~~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~--------- 159 (262)
T PF14257_consen 94 RSASLTIRVPA--DKFDSFLDELS---ELGKVTSRNISSEDVTEQYVDLEARLKNLEAEEERLLELLEKAK--------- 159 (262)
T ss_pred ceEEEEEEECH--HHHHHHHHHHh---ccCceeeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------
Confidence 34445555544 57777777776 222343333322222 223456666777777776665322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002139 390 ALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVG 428 (960)
Q Consensus 390 ~~l~ek~~~i~~le~ei~el~~q~d~~q~r~~~l~~~~~ 428 (960)
.-..+.+++.++.+.+.+++.++.++..|.+.+.
T Consensus 160 -----~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 160 -----TVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 1123556778888888888888888877776654
No 268
>PHA02624 large T antigen; Provisional
Probab=30.09 E-value=40 Score=41.95 Aligned_cols=30 Identities=23% Similarity=0.264 Sum_probs=23.6
Q ss_pred HHHHHHhCCCCE--EEEEecCCCCCCccccCC
Q 002139 93 EIALSVVSGINS--SIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 93 plV~svL~G~N~--tIfAYGqTGSGKTyTM~G 122 (960)
.++..++.|... ||+-||+.|||||+-..+
T Consensus 419 ~~lk~~l~giPKk~~il~~GPpnTGKTtf~~s 450 (647)
T PHA02624 419 DILKLIVENVPKRRYWLFKGPVNSGKTTLAAA 450 (647)
T ss_pred HHHHHHHhcCCCCeEEEEECCCCCCHHHHHHH
Confidence 346677788776 999999999999976544
No 269
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=29.67 E-value=39 Score=42.67 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=22.0
Q ss_pred HHHHHHHHhCCCCEEEEEecCCCCCCcccc
Q 002139 91 AKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 91 v~plV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
-..+++.+| |.|..|.+ +||+|||+.-
T Consensus 67 Q~eivq~AL-gkNtii~l--PTG~GKTfIA 93 (746)
T KOG0354|consen 67 QEELVQPAL-GKNTIIAL--PTGSGKTFIA 93 (746)
T ss_pred HHHHhHHhh-cCCeEEEe--ecCCCccchH
Confidence 446778888 99997776 9999999863
No 270
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=29.65 E-value=34 Score=39.39 Aligned_cols=30 Identities=23% Similarity=0.331 Sum_probs=22.3
Q ss_pred HHHHHHHHhCCCCEEEEEecCCCCCCccccC
Q 002139 91 AKEIALSVVSGINSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 91 v~plV~svL~G~N~tIfAYGqTGSGKTyTM~ 121 (960)
...++..++.+. ..|+-.|.||||||.+|.
T Consensus 167 ~~~~L~~~v~~~-~~ili~G~tGsGKTTll~ 196 (340)
T TIGR03819 167 VARLLRAIVAAR-LAFLISGGTGSGKTTLLS 196 (340)
T ss_pred HHHHHHHHHhCC-CeEEEECCCCCCHHHHHH
Confidence 445666666654 678888999999998763
No 271
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=29.63 E-value=61 Score=35.39 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=22.8
Q ss_pred EEecCCCCCCccccC------C-----------CchhhHHHHHHHHHhc
Q 002139 107 FAYGQTSSGKTYTMT------G-----------ITECTVADIFDYIHRH 138 (960)
Q Consensus 107 fAYGqTGSGKTyTM~------G-----------Ii~rai~dLF~~I~~~ 138 (960)
..+|++|+|||.|+. | +-...+..||.-+...
T Consensus 36 ~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~~ 84 (231)
T PF12774_consen 36 ALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQS 84 (231)
T ss_dssp EEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHHH
T ss_pred CCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhhc
Confidence 469999999999983 3 3445677777766553
No 272
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=29.60 E-value=47 Score=41.91 Aligned_cols=35 Identities=26% Similarity=0.380 Sum_probs=26.1
Q ss_pred HHHHhhHHHHHHHHh-CCCCEEEEEecCCCCCCcccc
Q 002139 85 QVYEDGAKEIALSVV-SGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 85 eVYe~~v~plV~svL-~G~N~tIfAYGqTGSGKTyTM 120 (960)
.||.- +......++ .|.|-||+.-|.+|||||.+.
T Consensus 68 Hifai-A~~Ay~~m~~~~~~QsIiiSGESGaGKTes~ 103 (691)
T cd01380 68 HIFAI-AEEAYKQMTRDEKNQSIIVSGESGAGKTVSA 103 (691)
T ss_pred CHHHH-HHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 36644 333344444 799999999999999999986
No 273
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=29.59 E-value=34 Score=38.65 Aligned_cols=24 Identities=38% Similarity=0.495 Sum_probs=21.6
Q ss_pred HHhCCCCEEEEEecCCCCCCcccc
Q 002139 97 SVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 97 svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
++-+||..-|++.|.||.|||+.|
T Consensus 36 sv~~GF~FNilCvGETg~GKsTLm 59 (406)
T KOG3859|consen 36 SVSQGFCFNILCVGETGLGKSTLM 59 (406)
T ss_pred HHhcCceEEEEEeccCCccHHHHH
Confidence 566899999999999999999865
No 274
>CHL00176 ftsH cell division protein; Validated
Probab=29.44 E-value=24 Score=44.10 Aligned_cols=18 Identities=22% Similarity=0.410 Sum_probs=15.4
Q ss_pred EEEEEecCCCCCCccccC
Q 002139 104 SSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 104 ~tIfAYGqTGSGKTyTM~ 121 (960)
..|+-||++|+|||+...
T Consensus 217 ~gVLL~GPpGTGKT~LAr 234 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAK 234 (638)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 358999999999999863
No 275
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=29.42 E-value=25 Score=35.86 Aligned_cols=15 Identities=33% Similarity=0.445 Sum_probs=13.1
Q ss_pred EEEecCCCCCCcccc
Q 002139 106 IFAYGQTSSGKTYTM 120 (960)
Q Consensus 106 IfAYGqTGSGKTyTM 120 (960)
|+.+|+.|||||+..
T Consensus 2 I~i~G~pGsGKst~a 16 (194)
T cd01428 2 ILLLGPPGSGKGTQA 16 (194)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999765
No 276
>PLN02199 shikimate kinase
Probab=29.41 E-value=68 Score=36.64 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=20.9
Q ss_pred HHhhHHHHHHHHhCCCCEEEEEecCCCCCCcccc
Q 002139 87 YEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 87 Ye~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
-...++.+.. .+. +.+|+-.|..|||||+.-
T Consensus 89 Lk~~a~~i~~-~l~--~~~I~LIG~~GSGKSTVg 119 (303)
T PLN02199 89 LKRKAEEVKP-YLN--GRSMYLVGMMGSGKTTVG 119 (303)
T ss_pred HHHHHHHHHH-HcC--CCEEEEECCCCCCHHHHH
Confidence 4444544443 444 447888999999999865
No 277
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=29.29 E-value=40 Score=42.29 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=17.9
Q ss_pred HHhCCCCEEEEEecCCCCCCcccc
Q 002139 97 SVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 97 svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
..-.+...-++..|+||||||.+.
T Consensus 276 d~~~~~~~~~Ll~~~TGSGKT~va 299 (681)
T PRK10917 276 DLASPKPMNRLLQGDVGSGKTVVA 299 (681)
T ss_pred hhhccCCceEEEECCCCCcHHHHH
Confidence 333455557899999999999765
No 278
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=29.22 E-value=52 Score=37.59 Aligned_cols=35 Identities=26% Similarity=0.452 Sum_probs=28.3
Q ss_pred EEEEecCCCCCCcccc-----------------------CCCchhhHHHHHHHHHhcc
Q 002139 105 SIFAYGQTSSGKTYTM-----------------------TGITECTVADIFDYIHRHE 139 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM-----------------------~GIi~rai~dLF~~I~~~~ 139 (960)
.|+.||..|+|||..- .|--|+.+++||+..+.+.
T Consensus 221 GVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~a 278 (440)
T KOG0726|consen 221 GVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHA 278 (440)
T ss_pred eeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcC
Confidence 4789999999998643 2567899999999887654
No 279
>PRK00295 hypothetical protein; Provisional
Probab=29.03 E-value=4e+02 Score=23.83 Aligned_cols=30 Identities=20% Similarity=0.176 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002139 394 KKDLQIQKMEREIRELTKQRDLAQSRVEDL 423 (960)
Q Consensus 394 ek~~~i~~le~ei~el~~q~d~~q~r~~~l 423 (960)
+.+..+-+..++|..|+.++..+..++.++
T Consensus 23 ~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 23 ALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444455555555555555555443
No 280
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=29.03 E-value=2.5e+02 Score=34.03 Aligned_cols=29 Identities=28% Similarity=0.483 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002139 399 IQKMEREIRELTKQRDLAQSRVEDLLRMV 427 (960)
Q Consensus 399 i~~le~ei~el~~q~d~~q~r~~~l~~~~ 427 (960)
-+.+.++.++|+.++..++..+++|.+.+
T Consensus 111 ~~~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 111 TQELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777777777666
No 281
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=29.01 E-value=37 Score=41.68 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=19.2
Q ss_pred HHHHHHhCCCCEEEEEecCCCCCCcccc
Q 002139 93 EIALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 93 plV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
.++..+++|.|+ ++..+||+|||.+.
T Consensus 20 ~~i~~il~g~dv--lv~~PTG~GKTl~y 45 (591)
T TIGR01389 20 EIISHVLDGRDV--LVVMPTGGGKSLCY 45 (591)
T ss_pred HHHHHHHcCCCE--EEEcCCCccHhHHH
Confidence 344567889985 55569999999774
No 282
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=29.00 E-value=53 Score=36.80 Aligned_cols=28 Identities=21% Similarity=0.268 Sum_probs=19.1
Q ss_pred HHHHHHHHhCCCCEEEEEecCCCCCCcccc
Q 002139 91 AKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 91 v~plV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
+..+...+-+|.++ +.=.+||+|||.+.
T Consensus 17 m~~v~~~~~~~~~~--~~eapTGtGKTl~~ 44 (289)
T smart00489 17 MEELKRVLDRGKIG--ILESPTGTGKTLSL 44 (289)
T ss_pred HHHHHHHHHcCCcE--EEECCCCcchhHHH
Confidence 33455555677654 55569999999875
No 283
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=29.00 E-value=53 Score=36.80 Aligned_cols=28 Identities=21% Similarity=0.268 Sum_probs=19.1
Q ss_pred HHHHHHHHhCCCCEEEEEecCCCCCCcccc
Q 002139 91 AKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 91 v~plV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
+..+...+-+|.++ +.=.+||+|||.+.
T Consensus 17 m~~v~~~~~~~~~~--~~eapTGtGKTl~~ 44 (289)
T smart00488 17 MEELKRVLDRGKIG--ILESPTGTGKTLSL 44 (289)
T ss_pred HHHHHHHHHcCCcE--EEECCCCcchhHHH
Confidence 33455555677654 55569999999875
No 284
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=28.91 E-value=27 Score=44.18 Aligned_cols=17 Identities=41% Similarity=0.433 Sum_probs=13.1
Q ss_pred CCCEEEEEecCCCCCCc
Q 002139 101 GINSSIFAYGQTSSGKT 117 (960)
Q Consensus 101 G~N~tIfAYGqTGSGKT 117 (960)
|...+.+-+|.||||||
T Consensus 215 ~~~~~~Ll~GvTGSGKT 231 (730)
T COG1198 215 GGFAPFLLDGVTGSGKT 231 (730)
T ss_pred ccccceeEeCCCCCcHH
Confidence 44455667899999999
No 285
>PRK08118 topology modulation protein; Reviewed
Probab=28.67 E-value=26 Score=35.92 Aligned_cols=14 Identities=36% Similarity=0.465 Sum_probs=12.2
Q ss_pred EEEecCCCCCCccc
Q 002139 106 IFAYGQTSSGKTYT 119 (960)
Q Consensus 106 IfAYGqTGSGKTyT 119 (960)
|+-.|+.|||||+.
T Consensus 4 I~I~G~~GsGKSTl 17 (167)
T PRK08118 4 IILIGSGGSGKSTL 17 (167)
T ss_pred EEEECCCCCCHHHH
Confidence 78899999999963
No 286
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=28.67 E-value=36 Score=40.23 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=17.4
Q ss_pred EEEEEecCCCCCCccccCCCchhh
Q 002139 104 SSIFAYGQTSSGKTYTMTGITECT 127 (960)
Q Consensus 104 ~tIfAYGqTGSGKTyTM~GIi~ra 127 (960)
.-++.+|+||||||.++ ++|.+
T Consensus 45 ~h~lvig~tgSGKt~~~--viP~l 66 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSF--VIPNL 66 (469)
T ss_pred eEEEEEeCCCCCcccee--eHhHH
Confidence 56889999999999887 34543
No 287
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=28.51 E-value=37 Score=41.44 Aligned_cols=43 Identities=26% Similarity=0.495 Sum_probs=31.0
Q ss_pred CceeecCeeeCCCCChHHHHHhhHHHHHHHHhCCCCEEEEEecCCCCCC
Q 002139 68 PSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGK 116 (960)
Q Consensus 68 ~~~F~FD~VF~~~atQeeVYe~~v~plV~svL~G~N~tIfAYGqTGSGK 116 (960)
...|+||.+.+....-.++- .++ .-..+.+++|+-+|.||+||
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~-----~~a-kr~A~tdstVLi~GESGTGK 281 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVL-----ELA-KRIAKTDSTVLILGESGTGK 281 (560)
T ss_pred ccccchhhhccCCHHHHHHH-----HHH-HhhcCCCCcEEEecCCCccH
Confidence 45799999998654322222 222 33579999999999999999
No 288
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=28.50 E-value=30 Score=42.02 Aligned_cols=46 Identities=20% Similarity=0.280 Sum_probs=31.7
Q ss_pred ceeecCeeeCCCCChHHHHHhhHHHHHHHHhCCCCEEEEEecCCCCCCcccc
Q 002139 69 SAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 69 ~~F~FD~VF~~~atQeeVYe~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
..+.||.+++.+..-..+.+. + .. +...+..|+-+|.+||||++..
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~-~----~~-~A~~~~pvlI~GE~GtGK~~lA 244 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQ-A----RK-LAMLDAPLLITGDTGTGKDLLA 244 (520)
T ss_pred ccccccceeECCHHHHHHHHH-H----HH-HhCCCCCEEEECCCCccHHHHH
Confidence 468999999876544444433 1 12 2345778999999999998764
No 289
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=28.47 E-value=26 Score=34.77 Aligned_cols=33 Identities=30% Similarity=0.415 Sum_probs=22.3
Q ss_pred hHHHHHHHHhCCCCEEEEEecCCCCCCccccCCCc
Q 002139 90 GAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGIT 124 (960)
Q Consensus 90 ~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~GIi 124 (960)
.++.+...+-.| ..|+-+|.-|+|||+-..|+.
T Consensus 4 la~~l~~~l~~g--~vi~L~GdLGaGKTtf~r~l~ 36 (123)
T PF02367_consen 4 LAKKLAQILKPG--DVILLSGDLGAGKTTFVRGLA 36 (123)
T ss_dssp HHHHHHHHHSS---EEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHHHHhCCCC--CEEEEECCCCCCHHHHHHHHH
Confidence 344455444333 568999999999998876643
No 290
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=28.39 E-value=22 Score=35.54 Aligned_cols=14 Identities=29% Similarity=0.401 Sum_probs=11.1
Q ss_pred EEEecCCCCCCccc
Q 002139 106 IFAYGQTSSGKTYT 119 (960)
Q Consensus 106 IfAYGqTGSGKTyT 119 (960)
|+..|++|||||+.
T Consensus 1 i~l~G~~GsGKSTl 14 (163)
T TIGR01313 1 FVLMGVAGSGKSTI 14 (163)
T ss_pred CEEECCCCCCHHHH
Confidence 35679999999854
No 291
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=28.36 E-value=43 Score=40.36 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=22.5
Q ss_pred HHHHHHHHhCCCCEEEEEecCCCCCCcccc---CCCchh
Q 002139 91 AKEIALSVVSGINSSIFAYGQTSSGKTYTM---TGITEC 126 (960)
Q Consensus 91 v~plV~svL~G~N~tIfAYGqTGSGKTyTM---~GIi~r 126 (960)
++..+.=+..|... ++.||+.|||||... .||+|-
T Consensus 187 AKrAleiAAAGgHn-Ll~~GpPGtGKTmla~Rl~~lLPp 224 (490)
T COG0606 187 AKRALEIAAAGGHN-LLLVGPPGTGKTMLASRLPGLLPP 224 (490)
T ss_pred HHHHHHHHHhcCCc-EEEecCCCCchHHhhhhhcccCCC
Confidence 33333333334443 678999999999876 587764
No 292
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=28.34 E-value=54 Score=42.83 Aligned_cols=12 Identities=50% Similarity=0.764 Sum_probs=10.4
Q ss_pred CCCCCCccccCC
Q 002139 111 QTSSGKTYTMTG 122 (960)
Q Consensus 111 qTGSGKTyTM~G 122 (960)
.|||||||||.+
T Consensus 67 ~TGtGKT~~~~~ 78 (986)
T PRK15483 67 ETGTGKTYVYTR 78 (986)
T ss_pred CCCCCHHHHHHH
Confidence 799999998854
No 293
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=28.26 E-value=25 Score=34.33 Aligned_cols=16 Identities=31% Similarity=0.345 Sum_probs=13.5
Q ss_pred EEEEecCCCCCCcccc
Q 002139 105 SIFAYGQTSSGKTYTM 120 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (960)
+|+.+|..|||||+..
T Consensus 1 ~i~l~G~~GsGKstla 16 (154)
T cd00464 1 NIVLIGMMGAGKTTVG 16 (154)
T ss_pred CEEEEcCCCCCHHHHH
Confidence 4788999999998765
No 294
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=28.01 E-value=52 Score=39.21 Aligned_cols=19 Identities=37% Similarity=0.440 Sum_probs=16.1
Q ss_pred EEEEEecCCCCCCccccCC
Q 002139 104 SSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 104 ~tIfAYGqTGSGKTyTM~G 122 (960)
..|+-.|++|+|||+|+.-
T Consensus 242 ~vI~LVGptGvGKTTTiaK 260 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAK 260 (436)
T ss_pred cEEEEECCCCCcHHHHHHH
Confidence 5678889999999999743
No 295
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=28.00 E-value=37 Score=41.93 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=17.7
Q ss_pred HHHHHhCCCCEEEEEecCCCCCCccc
Q 002139 94 IALSVVSGINSSIFAYGQTSSGKTYT 119 (960)
Q Consensus 94 lV~svL~G~N~tIfAYGqTGSGKTyT 119 (960)
++..++.|.|+.+ .++||+|||.+
T Consensus 33 ai~~il~g~dvlv--~apTGsGKTl~ 56 (607)
T PRK11057 33 IIDAVLSGRDCLV--VMPTGGGKSLC 56 (607)
T ss_pred HHHHHHcCCCEEE--EcCCCchHHHH
Confidence 3445678988755 46999999965
No 296
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=27.86 E-value=27 Score=38.30 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=16.4
Q ss_pred HhCCCCEE------EEEecCCCCCCcccc
Q 002139 98 VVSGINSS------IFAYGQTSSGKTYTM 120 (960)
Q Consensus 98 vL~G~N~t------IfAYGqTGSGKTyTM 120 (960)
+|+|+|.+ +.-.|++|||||+.+
T Consensus 17 VLkgi~l~v~~Gevv~iiGpSGSGKSTlL 45 (240)
T COG1126 17 VLKGISLSVEKGEVVVIIGPSGSGKSTLL 45 (240)
T ss_pred EecCcceeEcCCCEEEEECCCCCCHHHHH
Confidence 45555554 345799999999876
No 297
>PRK05580 primosome assembly protein PriA; Validated
Probab=27.64 E-value=29 Score=43.51 Aligned_cols=17 Identities=41% Similarity=0.417 Sum_probs=14.3
Q ss_pred EEEEEecCCCCCCcccc
Q 002139 104 SSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (960)
..++.+|+||||||.+.
T Consensus 163 ~~~Ll~~~TGSGKT~v~ 179 (679)
T PRK05580 163 SPFLLDGVTGSGKTEVY 179 (679)
T ss_pred CcEEEECCCCChHHHHH
Confidence 44889999999999765
No 298
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=27.51 E-value=25 Score=39.21 Aligned_cols=16 Identities=25% Similarity=0.299 Sum_probs=14.0
Q ss_pred EEEEecCCCCCCcccc
Q 002139 105 SIFAYGQTSSGKTYTM 120 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (960)
-|+-+|++|||||+..
T Consensus 60 ~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVA 75 (284)
T ss_pred eEEEEcCCCCCHHHHH
Confidence 5788999999999875
No 299
>CHL00181 cbbX CbbX; Provisional
Probab=27.49 E-value=27 Score=39.19 Aligned_cols=16 Identities=25% Similarity=0.266 Sum_probs=13.7
Q ss_pred EEEecCCCCCCccccC
Q 002139 106 IFAYGQTSSGKTYTMT 121 (960)
Q Consensus 106 IfAYGqTGSGKTyTM~ 121 (960)
|+-||++|+|||+...
T Consensus 62 ill~G~pGtGKT~lAr 77 (287)
T CHL00181 62 MSFTGSPGTGKTTVAL 77 (287)
T ss_pred EEEECCCCCCHHHHHH
Confidence 6779999999998753
No 300
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=27.49 E-value=3.3e+02 Score=24.13 Aligned_cols=30 Identities=23% Similarity=0.350 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002139 389 VALLRKKDLQIQKMEREIRELTKQRDLAQS 418 (960)
Q Consensus 389 ~~~l~ek~~~i~~le~ei~el~~q~d~~q~ 418 (960)
...|++.+.+.+.|..+|..|+++.+.+++
T Consensus 31 e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 31 ESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444555555566666666666666655543
No 301
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=27.47 E-value=67 Score=39.83 Aligned_cols=45 Identities=13% Similarity=0.135 Sum_probs=28.9
Q ss_pred eeecCeeeCCCCChHHHHHhhHHHHHHHHhCCCCEEEEEecCCCCCCcccc
Q 002139 70 AYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 70 ~F~FD~VF~~~atQeeVYe~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
.|+||.+.+.+..-..+.+. +..+. ..+..|+-+|.+||||++.-
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~-----~~~~a-~~~~pvli~Ge~GtGK~~~A 365 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHF-----GRQAA-KSSFPVLLCGEEGVGKALLA 365 (638)
T ss_pred cccccceEECCHHHHHHHHH-----HHHHh-CcCCCEEEECCCCcCHHHHH
Confidence 56788887654333333332 22332 45777999999999998653
No 302
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=27.44 E-value=27 Score=35.48 Aligned_cols=17 Identities=24% Similarity=0.487 Sum_probs=14.3
Q ss_pred EEEEecCCCCCCccccC
Q 002139 105 SIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM~ 121 (960)
.|+-.|++|||||+.+.
T Consensus 3 ~~~i~G~sGsGKttl~~ 19 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLD 19 (179)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46788999999998864
No 303
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=27.39 E-value=24 Score=44.65 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=16.6
Q ss_pred CEEEEEecCCCCCCccccCCC
Q 002139 103 NSSIFAYGQTSSGKTYTMTGI 123 (960)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~GI 123 (960)
|.-++..|.||||||++|.-+
T Consensus 430 n~n~~I~G~tGsGKS~~~~~l 450 (797)
T TIGR02746 430 NYNIAVVGGSGAGKSFFMQEL 450 (797)
T ss_pred ccceEEEcCCCCCHHHHHHHH
Confidence 445677899999999998553
No 304
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=27.25 E-value=51 Score=34.88 Aligned_cols=31 Identities=23% Similarity=0.256 Sum_probs=22.9
Q ss_pred HHHHHHHHhCCC---CEEEEEecCCCCCCccccC
Q 002139 91 AKEIALSVVSGI---NSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 91 v~plV~svL~G~---N~tIfAYGqTGSGKTyTM~ 121 (960)
+-+-++.++.|- ...+.-||.+|||||..+.
T Consensus 8 Gi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~ 41 (225)
T PRK09361 8 GCKMLDELLGGGFERGTITQIYGPPGSGKTNICL 41 (225)
T ss_pred CcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 344567777644 5678899999999998753
No 305
>PRK02119 hypothetical protein; Provisional
Probab=27.06 E-value=4.8e+02 Score=23.69 Aligned_cols=15 Identities=27% Similarity=0.532 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHh
Q 002139 362 VKHLQKELARLESEL 376 (960)
Q Consensus 362 ik~Lq~Ei~~Le~eL 376 (960)
+..+...|..|+..+
T Consensus 4 ~~~~e~Ri~~LE~rl 18 (73)
T PRK02119 4 QQNLENRIAELEMKI 18 (73)
T ss_pred hHHHHHHHHHHHHHH
Confidence 345666677777665
No 306
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=26.95 E-value=25 Score=39.99 Aligned_cols=20 Identities=40% Similarity=0.511 Sum_probs=15.9
Q ss_pred CEEEEEecCCCCCCccccCC
Q 002139 103 NSSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~G 122 (960)
.-+|+-.|.||||||+.|.-
T Consensus 143 ~~siii~G~t~sGKTt~lna 162 (312)
T COG0630 143 RKSIIICGGTASGKTTLLNA 162 (312)
T ss_pred CCcEEEECCCCCCHHHHHHH
Confidence 34567789999999999843
No 307
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=26.82 E-value=59 Score=35.23 Aligned_cols=30 Identities=13% Similarity=0.063 Sum_probs=23.7
Q ss_pred HHHHHHHHhC--CCCEEEEEecCCCCCCcccc
Q 002139 91 AKEIALSVVS--GINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 91 v~plV~svL~--G~N~tIfAYGqTGSGKTyTM 120 (960)
+..+.+.+.+ .-...|.-+|..|+|||...
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA 36 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLA 36 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceee
Confidence 4556666666 67788999999999999764
No 308
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=26.72 E-value=30 Score=33.35 Aligned_cols=15 Identities=33% Similarity=0.366 Sum_probs=12.5
Q ss_pred EEEecCCCCCCcccc
Q 002139 106 IFAYGQTSSGKTYTM 120 (960)
Q Consensus 106 IfAYGqTGSGKTyTM 120 (960)
|+-.|++|||||+.-
T Consensus 2 I~i~G~~GsGKst~a 16 (147)
T cd02020 2 IAIDGPAGSGKSTVA 16 (147)
T ss_pred EEEECCCCCCHHHHH
Confidence 577899999998754
No 309
>PRK13767 ATP-dependent helicase; Provisional
Probab=26.70 E-value=39 Score=43.71 Aligned_cols=23 Identities=35% Similarity=0.303 Sum_probs=17.5
Q ss_pred HHHhCCCCEEEEEecCCCCCCcccc
Q 002139 96 LSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 96 ~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
..+++|.|+.|. .+||||||.+.
T Consensus 42 ~~il~g~nvli~--APTGSGKTlaa 64 (876)
T PRK13767 42 PLIHEGKNVLIS--SPTGSGKTLAA 64 (876)
T ss_pred HHHHcCCCEEEE--CCCCCcHHHHH
Confidence 345789987664 49999999864
No 310
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=26.69 E-value=42 Score=33.39 Aligned_cols=16 Identities=38% Similarity=0.337 Sum_probs=13.4
Q ss_pred EEEEecCCCCCCcccc
Q 002139 105 SIFAYGQTSSGKTYTM 120 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (960)
.|.-+|+.|||||+..
T Consensus 2 iI~i~G~~GSGKstia 17 (171)
T TIGR02173 2 IITISGPPGSGKTTVA 17 (171)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999765
No 311
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.62 E-value=2.3e+02 Score=32.98 Aligned_cols=62 Identities=23% Similarity=0.294 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002139 361 LVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLL 424 (960)
Q Consensus 361 lik~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~ek~~~i~~le~ei~el~~q~d~~q~r~~~l~ 424 (960)
+....++|+.++..++.+.+.. ..+......+.+..++.||.++..|+++.|.+....++-+
T Consensus 219 lR~r~eeeme~~~aeq~slkRt--~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal 280 (365)
T KOG2391|consen 219 LRRRREEEMERLQAEQESLKRT--EEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREAL 280 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--HHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 5566677777766665433221 1122233344455566667777777777777766666533
No 312
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=26.56 E-value=57 Score=39.05 Aligned_cols=20 Identities=25% Similarity=0.441 Sum_probs=17.0
Q ss_pred CCCEEEEEecCCCCCCcccc
Q 002139 101 GINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 101 G~N~tIfAYGqTGSGKTyTM 120 (960)
+....|+-||+.|+|||+.-
T Consensus 274 ~~~~giLl~GpPGtGKT~lA 293 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLA 293 (494)
T ss_pred CCCCeeEEECCCCCCHHHHH
Confidence 45557999999999999876
No 313
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=26.36 E-value=20 Score=46.34 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=18.8
Q ss_pred CCEEEEEecCCCCCCccccCCCc
Q 002139 102 INSSIFAYGQTSSGKTYTMTGIT 124 (960)
Q Consensus 102 ~N~tIfAYGqTGSGKTyTM~GIi 124 (960)
-|+-.+.+|+||||||++|..++
T Consensus 474 ~n~n~~I~G~TGSGKS~l~~~li 496 (893)
T TIGR03744 474 KNAHLLILGPTGAGKSATLTNLL 496 (893)
T ss_pred CcccEEEECCCCCCHHHHHHHHH
Confidence 47777889999999999986543
No 314
>PF15186 TEX13: Testis-expressed sequence 13 protein family
Probab=26.34 E-value=74 Score=32.71 Aligned_cols=43 Identities=28% Similarity=0.356 Sum_probs=31.6
Q ss_pred ehhhhhHHHHhhcCCCccCCCccccHHHHHHHHHHHHHHHHHHHHhhC
Q 002139 825 LKRLSFLKESFSQGNMAMQDGRVLSLASSERALRRERETLSKLMRRRL 872 (960)
Q Consensus 825 lrrL~~l~~~~~~~~~~~~~~~~~~~~ss~~~l~~er~~l~~~~~~~l 872 (960)
-||.-||++....--.+ +-.++|-++.|+.+|||=+|.....|
T Consensus 84 ~~rV~~Lqd~~~~hksa-----~~aLas~L~~Lr~q~e~e~keaa~qL 126 (152)
T PF15186_consen 84 ARRVQWLQDQAEEHKSA-----AWALASELKRLREQREMERKEAAFQL 126 (152)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999877542111 34689999999999998777665543
No 315
>PRK08233 hypothetical protein; Provisional
Probab=26.31 E-value=30 Score=34.84 Aligned_cols=16 Identities=25% Similarity=0.144 Sum_probs=12.5
Q ss_pred EEEEecCCCCCCcccc
Q 002139 105 SIFAYGQTSSGKTYTM 120 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (960)
.|+--|++|||||+..
T Consensus 5 iI~I~G~~GsGKtTla 20 (182)
T PRK08233 5 IITIAAVSGGGKTTLT 20 (182)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3455699999999875
No 316
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=26.30 E-value=36 Score=42.58 Aligned_cols=44 Identities=18% Similarity=0.269 Sum_probs=28.0
Q ss_pred eecCeeeCCCCChHHHHHhhHHHHHHHHhCCCCEEEEEecCCCCCCcccc
Q 002139 71 YTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 71 F~FD~VF~~~atQeeVYe~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
+.|+.+++.+..-..+.+. +.. +...+..|+-+|.+|||||+.-
T Consensus 373 ~~~~~liG~S~~~~~~~~~-----~~~-~a~~~~pVLI~GE~GTGK~~lA 416 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQ-----VEM-VAQSDSTVLILGETGTGKELIA 416 (686)
T ss_pred ccccceeecCHHHHHHHHH-----HHH-HhCCCCCEEEECCCCcCHHHHH
Confidence 5666666654433334333 222 3456778999999999999853
No 317
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=26.23 E-value=54 Score=41.23 Aligned_cols=30 Identities=27% Similarity=0.473 Sum_probs=23.3
Q ss_pred HHHHHh--CCCCEEEEEecCCCCCCccccCCC
Q 002139 94 IALSVV--SGINSSIFAYGQTSSGKTYTMTGI 123 (960)
Q Consensus 94 lV~svL--~G~N~tIfAYGqTGSGKTyTM~GI 123 (960)
.+..++ +|-.+|+..-|..|||||.|+.++
T Consensus 411 f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~V 442 (767)
T KOG1514|consen 411 FLRSFISDQGLGSCMYISGVPGTGKTATVLEV 442 (767)
T ss_pred HHHhhcCCCCCceeEEEecCCCCCceehHHHH
Confidence 344444 477779999999999999998664
No 318
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=26.06 E-value=1.5e+02 Score=26.11 Aligned_cols=28 Identities=29% Similarity=0.555 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002139 396 DLQIQKMEREIRELTKQRDLAQSRVEDL 423 (960)
Q Consensus 396 ~~~i~~le~ei~el~~q~d~~q~r~~~l 423 (960)
..++..+++++.+++.+.+.++.+++.+
T Consensus 23 ~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 23 NQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444444433
No 319
>PRK04296 thymidine kinase; Provisional
Probab=26.05 E-value=21 Score=37.23 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=16.7
Q ss_pred EEEEecCCCCCCccccCCCch
Q 002139 105 SIFAYGQTSSGKTYTMTGITE 125 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM~GIi~ 125 (960)
.++-+|+.|+|||..+.|++.
T Consensus 4 i~litG~~GsGKTT~~l~~~~ 24 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAY 24 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHH
Confidence 567899999999988766443
No 320
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=25.95 E-value=57 Score=40.97 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=26.0
Q ss_pred HHHHhhHHHHHHHHh-CCCCEEEEEecCCCCCCccccC
Q 002139 85 QVYEDGAKEIALSVV-SGINSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 85 eVYe~~v~plV~svL-~G~N~tIfAYGqTGSGKTyTM~ 121 (960)
.||.- +......++ .+.|-||+.-|.+|||||.|+.
T Consensus 68 Hifav-A~~Ay~~m~~~~~~QsIiisGESGsGKTet~K 104 (653)
T cd01379 68 HIFAI-ADAAYQSLVTYNQDQCIVISGESGSGKTESAH 104 (653)
T ss_pred cHHHH-HHHHHHHHHhcCCCceEEEecCCCCCchHHHH
Confidence 36643 333333443 5899999999999999999973
No 321
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=25.91 E-value=40 Score=40.83 Aligned_cols=27 Identities=19% Similarity=0.373 Sum_probs=20.4
Q ss_pred HHHHhCCCCE------EEEEecCCCCCCccccC
Q 002139 95 ALSVVSGINS------SIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 95 V~svL~G~N~------tIfAYGqTGSGKTyTM~ 121 (960)
+..+++|.+. .|+-.|++|||||+.|.
T Consensus 18 l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 18 LERILVKFNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred HHHHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence 4456777554 46788999999999875
No 322
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=25.87 E-value=54 Score=34.42 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=21.3
Q ss_pred HHHHHHhC-CC--CEEEEEecCCCCCCccccC
Q 002139 93 EIALSVVS-GI--NSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 93 plV~svL~-G~--N~tIfAYGqTGSGKTyTM~ 121 (960)
+-++.++. |+ ...+..+|++|||||....
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~ 37 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAI 37 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHH
Confidence 44677775 44 3458899999999998753
No 323
>PRK10867 signal recognition particle protein; Provisional
Probab=25.84 E-value=71 Score=38.16 Aligned_cols=20 Identities=30% Similarity=0.333 Sum_probs=16.3
Q ss_pred CEEEEEecCCCCCCccccCC
Q 002139 103 NSSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~G 122 (960)
-..|+..|.+|||||+|..-
T Consensus 100 p~vI~~vG~~GsGKTTtaak 119 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGK 119 (433)
T ss_pred CEEEEEECCCCCcHHHHHHH
Confidence 45678889999999999643
No 324
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=25.74 E-value=32 Score=30.05 Aligned_cols=17 Identities=29% Similarity=0.356 Sum_probs=13.3
Q ss_pred EEEecCCCCCCccccCC
Q 002139 106 IFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 106 IfAYGqTGSGKTyTM~G 122 (960)
++.+|..|+|||++...
T Consensus 2 ~~~~g~~G~Gktt~~~~ 18 (99)
T cd01983 2 IVVTGKGGVGKTTLAAN 18 (99)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 46678889999988644
No 325
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=25.69 E-value=3.3e+02 Score=24.25 Aligned_cols=31 Identities=19% Similarity=0.197 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 002139 399 IQKMEREIRELTKQRDLAQSRVEDLLRMVGC 429 (960)
Q Consensus 399 i~~le~ei~el~~q~d~~q~r~~~l~~~~~~ 429 (960)
|+.|.+.+-+.+++++.++.++..|..++.+
T Consensus 20 ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 20 IEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444433
No 326
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=25.67 E-value=35 Score=37.99 Aligned_cols=19 Identities=32% Similarity=0.394 Sum_probs=15.0
Q ss_pred EEEEEecCCCCCCccccCC
Q 002139 104 SSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 104 ~tIfAYGqTGSGKTyTM~G 122 (960)
.+|...|++|+|||.|..-
T Consensus 73 ~vi~l~G~~G~GKTTt~ak 91 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAK 91 (272)
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 4566669999999999743
No 327
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=25.61 E-value=33 Score=33.32 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=13.7
Q ss_pred EEEEEecCCCCCCcccc
Q 002139 104 SSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (960)
-.+.-.|++|||||.++
T Consensus 16 e~v~I~GpSGsGKSTLl 32 (107)
T cd00820 16 VGVLITGDSGIGKTELA 32 (107)
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 34566799999999876
No 328
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=25.57 E-value=58 Score=36.67 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=17.6
Q ss_pred HhCC-CCEEEEEecCCCCCCcccc
Q 002139 98 VVSG-INSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 98 vL~G-~N~tIfAYGqTGSGKTyTM 120 (960)
+-.| ....++-||+.|+|||++.
T Consensus 30 ~~~~~~~~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 30 IKNGRIAHAYLFSGPRGTGKTSIA 53 (355)
T ss_pred HHcCCCCeEEEEECCCCCCHHHHH
Confidence 3345 3457889999999999875
No 329
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=25.51 E-value=33 Score=43.71 Aligned_cols=19 Identities=32% Similarity=0.312 Sum_probs=15.9
Q ss_pred EEEEEecCCCCCCccccCC
Q 002139 104 SSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 104 ~tIfAYGqTGSGKTyTM~G 122 (960)
.+|.-.|+||+|||+|+.-
T Consensus 186 ~Vi~lVGpnGvGKTTTiaK 204 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAK 204 (767)
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 4677889999999999843
No 330
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=25.38 E-value=28 Score=36.01 Aligned_cols=15 Identities=40% Similarity=0.339 Sum_probs=12.5
Q ss_pred EEEecCCCCCCcccc
Q 002139 106 IFAYGQTSSGKTYTM 120 (960)
Q Consensus 106 IfAYGqTGSGKTyTM 120 (960)
|.--|++|||||+++
T Consensus 2 igi~G~~GsGKSTl~ 16 (198)
T cd02023 2 IGIAGGSGSGKTTVA 16 (198)
T ss_pred EEEECCCCCCHHHHH
Confidence 455699999999987
No 331
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=25.34 E-value=31 Score=40.96 Aligned_cols=20 Identities=30% Similarity=0.252 Sum_probs=16.4
Q ss_pred CEEEEEecCCCCCCccccCC
Q 002139 103 NSSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~G 122 (960)
+..|...|++|+|||+|+.-
T Consensus 191 g~vi~lvGpnG~GKTTtlak 210 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAK 210 (420)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 35677889999999999853
No 332
>PRK14531 adenylate kinase; Provisional
Probab=25.32 E-value=33 Score=35.40 Aligned_cols=16 Identities=19% Similarity=0.343 Sum_probs=13.5
Q ss_pred EEEEecCCCCCCcccc
Q 002139 105 SIFAYGQTSSGKTYTM 120 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (960)
-|+.+|+.|||||+..
T Consensus 4 ~i~i~G~pGsGKsT~~ 19 (183)
T PRK14531 4 RLLFLGPPGAGKGTQA 19 (183)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999998764
No 333
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=25.28 E-value=31 Score=40.68 Aligned_cols=20 Identities=40% Similarity=0.433 Sum_probs=16.5
Q ss_pred EEEEEecCCCCCCccccCCC
Q 002139 104 SSIFAYGQTSSGKTYTMTGI 123 (960)
Q Consensus 104 ~tIfAYGqTGSGKTyTM~GI 123 (960)
-.|.-.|++|+|||+|+..+
T Consensus 207 ~ii~lvGptGvGKTTt~akL 226 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKL 226 (407)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35678899999999998664
No 334
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=25.24 E-value=63 Score=38.62 Aligned_cols=19 Identities=37% Similarity=0.548 Sum_probs=15.4
Q ss_pred EEEEEecCCCCCCccccCC
Q 002139 104 SSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 104 ~tIfAYGqTGSGKTyTM~G 122 (960)
..|+..|++|+|||+|+.-
T Consensus 224 ~vi~lvGptGvGKTTtaaK 242 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAK 242 (432)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4577789999999999743
No 335
>PRK06217 hypothetical protein; Validated
Probab=25.18 E-value=32 Score=35.43 Aligned_cols=15 Identities=33% Similarity=0.317 Sum_probs=12.7
Q ss_pred EEEecCCCCCCcccc
Q 002139 106 IFAYGQTSSGKTYTM 120 (960)
Q Consensus 106 IfAYGqTGSGKTyTM 120 (960)
|+-.|.+|||||+.-
T Consensus 4 I~i~G~~GsGKSTla 18 (183)
T PRK06217 4 IHITGASGSGTTTLG 18 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 778899999998753
No 336
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=25.14 E-value=39 Score=39.03 Aligned_cols=77 Identities=19% Similarity=0.241 Sum_probs=42.3
Q ss_pred eeeCCCCChHHHHHhhHHHHHHHHh-CCCCEEEEEecCCCCCCccccC--CCchhhHHHHHHHHHhcccccEEEEeehhh
Q 002139 75 RVFWGDCSTTQVYEDGAKEIALSVV-SGINSSIFAYGQTSSGKTYTMT--GITECTVADIFDYIHRHEERAFVLKFSAME 151 (960)
Q Consensus 75 ~VF~~~atQeeVYe~~v~plV~svL-~G~N~tIfAYGqTGSGKTyTM~--GIi~rai~dLF~~I~~~~~~~f~V~vS~lE 151 (960)
.|=..+.++.+-=.+.+..+++.++ .||. +|.||..|.|||+.+. +|.-.+-.++|.+-...+ .-.+.|| +|
T Consensus 62 ~v~a~~~~~~eWdrs~~P~lId~~fr~g~~--~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~ep--Gkvlyvs-lE 136 (402)
T COG3598 62 QVQAEAMRLSEWDRSNSPQLIDEFFRKGYV--SILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEP--GKVLYVS-LE 136 (402)
T ss_pred EehhhhcChhhcCcccChhhhhHHhhcCee--EEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCC--CeEEEEE-ec
Confidence 5544443333322334555555554 4554 5789999999998873 555555667776422122 2233333 46
Q ss_pred eecch
Q 002139 152 IYNEA 156 (960)
Q Consensus 152 IYNE~ 156 (960)
.|.|.
T Consensus 137 l~re~ 141 (402)
T COG3598 137 LYRED 141 (402)
T ss_pred cChHH
Confidence 66554
No 337
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=25.10 E-value=45 Score=39.87 Aligned_cols=42 Identities=17% Similarity=0.155 Sum_probs=26.9
Q ss_pred ecCeeeCCCCChHHHHHhhHHHHHHHHhCCCC-EEEEEecCCCCCCccccC
Q 002139 72 TFDRVFWGDCSTTQVYEDGAKEIALSVVSGIN-SSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 72 ~FD~VF~~~atQeeVYe~~v~plV~svL~G~N-~tIfAYGqTGSGKTyTM~ 121 (960)
+||.|++. +.+ +..+...+-.|.- .+++-||+.|+|||.+..
T Consensus 15 ~~~diiGq----~~~----v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~ 57 (451)
T PRK06305 15 TFSEILGQ----DAV----VAVLKNALRFNRAAHAYLFSGIRGTGKTTLAR 57 (451)
T ss_pred CHHHhcCc----HHH----HHHHHHHHHcCCCceEEEEEcCCCCCHHHHHH
Confidence 67878764 333 2333334445543 457779999999998763
No 338
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=25.05 E-value=29 Score=36.03 Aligned_cols=15 Identities=40% Similarity=0.328 Sum_probs=12.4
Q ss_pred EEEecCCCCCCcccc
Q 002139 106 IFAYGQTSSGKTYTM 120 (960)
Q Consensus 106 IfAYGqTGSGKTyTM 120 (960)
|.-.|++|||||+.-
T Consensus 2 IgI~G~sgSGKTTla 16 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLA 16 (194)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 556799999999874
No 339
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=25.02 E-value=63 Score=41.27 Aligned_cols=18 Identities=33% Similarity=0.302 Sum_probs=15.9
Q ss_pred CEEEEEecCCCCCCcccc
Q 002139 103 NSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 103 N~tIfAYGqTGSGKTyTM 120 (960)
.++++-+|+||+|||+..
T Consensus 488 ~~~~Lf~GP~GvGKT~lA 505 (758)
T PRK11034 488 VGSFLFAGPTGVGKTEVT 505 (758)
T ss_pred cceEEEECCCCCCHHHHH
Confidence 367999999999999986
No 340
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=25.01 E-value=3e+02 Score=31.45 Aligned_cols=61 Identities=16% Similarity=0.262 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002139 362 VKHLQKELARLESELRSPAPASS--TCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVED 422 (960)
Q Consensus 362 ik~Lq~Ei~~Le~eL~~~~~~~~--~~~~~~~l~ek~~~i~~le~ei~el~~q~d~~q~r~~~ 422 (960)
...|+.++..|++.......... .......+.+.+.+|..+++++.+++.++..++.+++.
T Consensus 186 ~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~ 248 (325)
T PF08317_consen 186 KAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEE 248 (325)
T ss_pred HHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666654433221110 00112223344444554444444555544444444433
No 341
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=24.97 E-value=35 Score=39.28 Aligned_cols=40 Identities=15% Similarity=0.322 Sum_probs=23.5
Q ss_pred CCCChHHHHH-hhHHHHHHHHhCCCCEEEEEecCCCCCCcccc
Q 002139 79 GDCSTTQVYE-DGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 79 ~~atQeeVYe-~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
|..+..-+|+ .+...++-.+.. +.-|+-.|++|+|||...
T Consensus 41 p~~d~~y~f~~~~~~~vl~~l~~--~~~ilL~G~pGtGKTtla 81 (327)
T TIGR01650 41 PDIDPAYLFDKATTKAICAGFAY--DRRVMVQGYHGTGKSTHI 81 (327)
T ss_pred CCCCCCccCCHHHHHHHHHHHhc--CCcEEEEeCCCChHHHHH
Confidence 3333333443 233344444443 345888999999999764
No 342
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=24.87 E-value=52 Score=42.29 Aligned_cols=28 Identities=14% Similarity=0.213 Sum_probs=20.1
Q ss_pred HHHHHHHHhCCCCEEEEEecCCCCCCcccc
Q 002139 91 AKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 91 v~plV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
...+++.+-++- .|+..|+||||||..+
T Consensus 10 ~~~i~~~l~~~~--~vvv~A~TGSGKTt~~ 37 (812)
T PRK11664 10 LPELLTALKTAP--QVLLKAPTGAGKSTWL 37 (812)
T ss_pred HHHHHHHHHhCC--CEEEEcCCCCCHHHHH
Confidence 455665555544 3677899999999876
No 343
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=24.85 E-value=2.5e+02 Score=37.21 Aligned_cols=15 Identities=40% Similarity=0.651 Sum_probs=13.2
Q ss_pred EEecCCCCCCccccC
Q 002139 107 FAYGQTSSGKTYTMT 121 (960)
Q Consensus 107 fAYGqTGSGKTyTM~ 121 (960)
|.-|+.||||+-.|.
T Consensus 66 fI~G~NGSGKSAIlt 80 (1074)
T KOG0250|consen 66 FIVGNNGSGKSAILT 80 (1074)
T ss_pred EeecCCCCcHHHHHH
Confidence 788999999998774
No 344
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=24.82 E-value=1.6e+02 Score=35.14 Aligned_cols=65 Identities=22% Similarity=0.340 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002139 362 VKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVG 428 (960)
Q Consensus 362 ik~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~ek~~~i~~le~ei~el~~q~d~~q~r~~~l~~~~~ 428 (960)
.++.+++|++++..+...... ...+...+.+.+.+|..++.++.+....++.+..+|.++...+.
T Consensus 40 l~q~q~ei~~~~~~i~~~~~~--~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~ 104 (420)
T COG4942 40 LKQIQKEIAALEKKIREQQDQ--RAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLN 104 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHH
Confidence 345556666655555322111 11122223333334444444444444444444444444444433
No 345
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=24.80 E-value=53 Score=34.53 Aligned_cols=30 Identities=23% Similarity=0.269 Sum_probs=22.1
Q ss_pred HHHHHHHhCC-C--CEEEEEecCCCCCCccccC
Q 002139 92 KEIALSVVSG-I--NSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 92 ~plV~svL~G-~--N~tIfAYGqTGSGKTyTM~ 121 (960)
-+-++.++.| + ...+.-+|++|+|||..+.
T Consensus 5 ~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~ 37 (226)
T cd01393 5 SKALDELLGGGIPTGRITEIFGEFGSGKTQLCL 37 (226)
T ss_pred cHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHH
Confidence 4556777764 3 4567788999999998764
No 346
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=24.79 E-value=34 Score=36.30 Aligned_cols=16 Identities=38% Similarity=0.468 Sum_probs=14.0
Q ss_pred EEEEecCCCCCCcccc
Q 002139 105 SIFAYGQTSSGKTYTM 120 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (960)
.|+..|.||||||.+.
T Consensus 2 ~IlllG~tGsGKSs~~ 17 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLG 17 (212)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999774
No 347
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=24.78 E-value=45 Score=42.39 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=18.9
Q ss_pred HHHHHhCCCCEEEEEecCCCCCCcccc
Q 002139 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 94 lV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
.+..+++|.|..+.| +||||||.+.
T Consensus 44 ai~~il~G~nvvv~a--pTGSGKTla~ 68 (742)
T TIGR03817 44 AAELAHAGRHVVVAT--GTASGKSLAY 68 (742)
T ss_pred HHHHHHCCCCEEEEC--CCCCcHHHHH
Confidence 345668999976655 8999999653
No 348
>PRK01172 ski2-like helicase; Provisional
Probab=24.68 E-value=49 Score=41.31 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=16.1
Q ss_pred HHhCCCCEEEEEecCCCCCCccc
Q 002139 97 SVVSGINSSIFAYGQTSSGKTYT 119 (960)
Q Consensus 97 svL~G~N~tIfAYGqTGSGKTyT 119 (960)
.+.+|.| ++..++||||||..
T Consensus 33 ~l~~~~n--vlv~apTGSGKTl~ 53 (674)
T PRK01172 33 QLRKGEN--VIVSVPTAAGKTLI 53 (674)
T ss_pred HHhcCCc--EEEECCCCchHHHH
Confidence 3467877 56677999999975
No 349
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=24.53 E-value=33 Score=34.62 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=12.9
Q ss_pred EEEecCCCCCCcccc
Q 002139 106 IFAYGQTSSGKTYTM 120 (960)
Q Consensus 106 IfAYGqTGSGKTyTM 120 (960)
++.+|++|+|||...
T Consensus 2 ~li~G~~G~GKT~l~ 16 (187)
T cd01124 2 TLLSGGPGTGKTTFA 16 (187)
T ss_pred EEEEcCCCCCHHHHH
Confidence 678999999999754
No 350
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=24.52 E-value=61 Score=41.46 Aligned_cols=35 Identities=23% Similarity=0.374 Sum_probs=26.1
Q ss_pred HHHHhhHHHHHHHHh-CCCCEEEEEecCCCCCCcccc
Q 002139 85 QVYEDGAKEIALSVV-SGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 85 eVYe~~v~plV~svL-~G~N~tIfAYGqTGSGKTyTM 120 (960)
.||.- +......++ .|.|-||+.-|.+|||||.|.
T Consensus 68 Hifai-A~~Ay~~m~~~~~~QsIiiSGESGAGKTe~t 103 (767)
T cd01386 68 HIYSL-AQTAYRALLETRRDQSIIFLGRSGAGKTTSC 103 (767)
T ss_pred CHHHH-HHHHHHHHHHcCCCceEEEecCCCCCcHHHH
Confidence 46643 333344444 699999999999999999985
No 351
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.50 E-value=43 Score=41.84 Aligned_cols=17 Identities=24% Similarity=0.456 Sum_probs=14.9
Q ss_pred EEEEecCCCCCCccccC
Q 002139 105 SIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM~ 121 (960)
.++-||++|+|||.++.
T Consensus 112 illL~GP~GsGKTTl~~ 128 (637)
T TIGR00602 112 ILLITGPSGCGKSTTIK 128 (637)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999999874
No 352
>PTZ00110 helicase; Provisional
Probab=24.46 E-value=47 Score=40.54 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=18.4
Q ss_pred HHHHhCCCCEEEEEecCCCCCCcccc
Q 002139 95 ALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 95 V~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
+..++.|.|. ++.++||||||.+.
T Consensus 161 ip~~l~G~dv--I~~ApTGSGKTlay 184 (545)
T PTZ00110 161 WPIALSGRDM--IGIAETGSGKTLAF 184 (545)
T ss_pred HHHHhcCCCE--EEEeCCCChHHHHH
Confidence 4567889876 45679999999763
No 353
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=24.38 E-value=31 Score=32.35 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=13.3
Q ss_pred EEEEecCCCCCCcccc
Q 002139 105 SIFAYGQTSSGKTYTM 120 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (960)
-|..+|.+|||||..+
T Consensus 3 ki~~~G~~~~GKstl~ 18 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLL 18 (161)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678899999999864
No 354
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.35 E-value=42 Score=40.68 Aligned_cols=41 Identities=17% Similarity=0.184 Sum_probs=25.8
Q ss_pred ecCeeeCCCCChHHHHHhhHHHHHHHHhCCCCE-EEEEecCCCCCCcccc
Q 002139 72 TFDRVFWGDCSTTQVYEDGAKEIALSVVSGINS-SIFAYGQTSSGKTYTM 120 (960)
Q Consensus 72 ~FD~VF~~~atQeeVYe~~v~plV~svL~G~N~-tIfAYGqTGSGKTyTM 120 (960)
+||.|.+ |+.+- +.+-..+-.|.-. .++-||+.|+|||.+.
T Consensus 11 ~f~dliG----Qe~vv----~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~A 52 (491)
T PRK14964 11 SFKDLVG----QDVLV----RILRNAFTLNKIPQSILLVGASGVGKTTCA 52 (491)
T ss_pred CHHHhcC----cHHHH----HHHHHHHHcCCCCceEEEECCCCccHHHHH
Confidence 5676665 33333 2233333445544 7899999999999865
No 355
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=24.25 E-value=31 Score=32.02 Aligned_cols=15 Identities=33% Similarity=0.539 Sum_probs=12.9
Q ss_pred EEEecCCCCCCcccc
Q 002139 106 IFAYGQTSSGKTYTM 120 (960)
Q Consensus 106 IfAYGqTGSGKTyTM 120 (960)
|+..|..|+|||..+
T Consensus 2 I~V~G~~g~GKTsLi 16 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLI 16 (119)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECcCCCCHHHHH
Confidence 678899999999765
No 356
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=24.17 E-value=34 Score=34.66 Aligned_cols=16 Identities=25% Similarity=0.341 Sum_probs=13.3
Q ss_pred EEEEecCCCCCCcccc
Q 002139 105 SIFAYGQTSSGKTYTM 120 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (960)
.|...|++|||||..+
T Consensus 3 ii~l~G~~GsGKsTl~ 18 (180)
T TIGR03263 3 LIVISGPSGVGKSTLV 18 (180)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999853
No 357
>PRK04325 hypothetical protein; Provisional
Probab=24.15 E-value=3.3e+02 Score=24.80 Aligned_cols=14 Identities=21% Similarity=0.539 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHh
Q 002139 363 KHLQKELARLESEL 376 (960)
Q Consensus 363 k~Lq~Ei~~Le~eL 376 (960)
..+...|..|+..+
T Consensus 5 ~~~e~Ri~~LE~kl 18 (74)
T PRK04325 5 QEMEDRITELEIQL 18 (74)
T ss_pred hhHHHHHHHHHHHH
Confidence 34555666666655
No 358
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=24.14 E-value=32 Score=41.87 Aligned_cols=16 Identities=31% Similarity=0.627 Sum_probs=13.9
Q ss_pred EEEEecCCCCCCcccc
Q 002139 105 SIFAYGQTSSGKTYTM 120 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (960)
.|+-||++|+|||+..
T Consensus 218 GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIA 233 (512)
T ss_pred ceEEECCCCCcHHHHH
Confidence 4888999999999864
No 359
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=24.07 E-value=98 Score=36.16 Aligned_cols=40 Identities=23% Similarity=0.314 Sum_probs=29.7
Q ss_pred eCCCCChHHHHHhhHHHHHHHHhCCCCEEEEEecCCCCCCcccc
Q 002139 77 FWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 77 F~~~atQeeVYe~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
|+-...|..+++- +-+.++.|-.-+++-.|+-|||||+-+
T Consensus 27 ~g~~~~~~~l~~~----lkqt~~~gEsnsviiigprgsgkT~li 66 (408)
T KOG2228|consen 27 FGVQDEQKHLSEL----LKQTILHGESNSVIIIGPRGSGKTILI 66 (408)
T ss_pred eehHHHHHHHHHH----HHHHHHhcCCCceEEEccCCCCceEee
Confidence 3334456666654 334567899999999999999999987
No 360
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=24.01 E-value=1.4e+02 Score=26.23 Aligned_cols=17 Identities=47% Similarity=0.741 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHh
Q 002139 360 ALVKHLQKELARLESEL 376 (960)
Q Consensus 360 ~lik~Lq~Ei~~Le~eL 376 (960)
+.+..|++++..++.++
T Consensus 4 ~E~~rL~Kel~kl~~~i 20 (66)
T PF10458_consen 4 AEIERLEKELEKLEKEI 20 (66)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555444
No 361
>PRK00300 gmk guanylate kinase; Provisional
Probab=23.95 E-value=35 Score=35.39 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=14.1
Q ss_pred CEEEEEecCCCCCCcccc
Q 002139 103 NSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 103 N~tIfAYGqTGSGKTyTM 120 (960)
+..|.-.|++|||||..+
T Consensus 5 g~~i~i~G~sGsGKstl~ 22 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLV 22 (205)
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 345778899999999654
No 362
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=23.95 E-value=1.6e+02 Score=29.74 Aligned_cols=63 Identities=21% Similarity=0.229 Sum_probs=44.3
Q ss_pred eehhhhhHHHHhhcCCCccC--CCccccHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHhhCC
Q 002139 824 ELKRLSFLKESFSQGNMAMQ--DGRVLSLASSERALRRERETLSKLMRRRLSADERNKLYQKWGI 886 (960)
Q Consensus 824 ElrrL~~l~~~~~~~~~~~~--~~~~~~~~ss~~~l~~er~~l~~~~~~~l~~~ere~ly~kw~i 886 (960)
|||||+-||+.|...+.... +..-..-....+.|-+..|-..+.++.-+...+=|-.+.|+.+
T Consensus 53 EL~~Ls~LK~~y~~~~~~~~~~~~~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L 117 (131)
T PF04859_consen 53 ELRRLSELKRRYRKKQSDPSPQVARLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKL 117 (131)
T ss_pred HHHHHHHHHHHHHcCCCCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999976432211 1111222345667788889999999888888888877777654
No 363
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=23.93 E-value=55 Score=40.65 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=15.5
Q ss_pred CCCEEEEEecCCCCCCcccc
Q 002139 101 GINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 101 G~N~tIfAYGqTGSGKTyTM 120 (960)
....-++..|+||||||...
T Consensus 254 ~~~~~~Ll~g~TGSGKT~va 273 (630)
T TIGR00643 254 DVPMNRLLQGDVGSGKTLVA 273 (630)
T ss_pred CCCccEEEECCCCCcHHHHH
Confidence 34445788999999999864
No 364
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=23.72 E-value=37 Score=37.13 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=16.9
Q ss_pred EEEEecCCCCCCcccc---CCCchh
Q 002139 105 SIFAYGQTSSGKTYTM---TGITEC 126 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM---~GIi~r 126 (960)
.+..+|++|||||+.+ .|+++.
T Consensus 32 ~~~i~G~nGsGKSTL~~~l~GLl~p 56 (235)
T COG1122 32 RVLLIGPNGSGKSTLLKLLNGLLKP 56 (235)
T ss_pred EEEEECCCCCCHHHHHHHHcCcCcC
Confidence 5778999999999876 465543
No 365
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.66 E-value=60 Score=37.18 Aligned_cols=42 Identities=19% Similarity=0.304 Sum_probs=26.4
Q ss_pred ecCeeeCCCCChHHHHHhhHHHHHHHHhCCC-CEEEEEecCCCCCCccccC
Q 002139 72 TFDRVFWGDCSTTQVYEDGAKEIALSVVSGI-NSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 72 ~FD~VF~~~atQeeVYe~~v~plV~svL~G~-N~tIfAYGqTGSGKTyTM~ 121 (960)
+||.|.+ |+.+ +..+...+-.|. ...++-||+.|+|||++..
T Consensus 15 ~~~~iig----~~~~----~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~ 57 (367)
T PRK14970 15 TFDDVVG----QSHI----TNTLLNAIENNHLAQALLFCGPRGVGKTTCAR 57 (367)
T ss_pred cHHhcCC----cHHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHH
Confidence 5666654 3333 233444444564 4478889999999998764
No 366
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=23.62 E-value=2.4e+02 Score=31.41 Aligned_cols=60 Identities=13% Similarity=0.172 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002139 366 QKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMV 427 (960)
Q Consensus 366 q~Ei~~Le~eL~~~~~~~~~~~~~~~l~ek~~~i~~le~ei~el~~q~d~~q~r~~~l~~~~ 427 (960)
+..+.+|+..+...... ..++...+.....+|.+|+-+++++.-+++.++.|..++-..+
T Consensus 39 ~~r~~~le~~~~~~~~~--~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dl 98 (263)
T PRK10803 39 EDRVTQLERISNAHSQL--LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQI 98 (263)
T ss_pred HHHHHHHHHHHHhhhHH--HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566555332111 1122333444444455555555555555555555544444433
No 367
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=23.52 E-value=5.9e+02 Score=26.87 Aligned_cols=57 Identities=23% Similarity=0.388 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002139 359 KALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLL 424 (960)
Q Consensus 359 ~~lik~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~ek~~~i~~le~ei~el~~q~d~~q~r~~~l~ 424 (960)
...+..|+.++..|+.++. +....++++...++.+.+|+.-|+.+...++.++..|.
T Consensus 115 ~~~l~~l~~~~~~L~~~~~---------~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~ 171 (194)
T PF08614_consen 115 ERRLAELEAELAQLEEKIK---------DLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLE 171 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666666666666553 23445556666666666666666555555555544443
No 368
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=23.50 E-value=46 Score=35.03 Aligned_cols=29 Identities=21% Similarity=0.378 Sum_probs=21.3
Q ss_pred EEEecCCCCCCcccc------CCCchhhHHHHHHH
Q 002139 106 IFAYGQTSSGKTYTM------TGITECTVADIFDY 134 (960)
Q Consensus 106 IfAYGqTGSGKTyTM------~GIi~rai~dLF~~ 134 (960)
|+.+|+.|||||+.- +|+.-..+.+|+..
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~ 36 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRA 36 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHH
Confidence 678999999998744 57666666666654
No 369
>PHA01747 putative ATP-dependent protease
Probab=23.42 E-value=40 Score=39.65 Aligned_cols=35 Identities=23% Similarity=0.131 Sum_probs=27.7
Q ss_pred HHHhhHHHHHHHHhCCCCEEEEEecCCCCCCcccc
Q 002139 86 VYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 86 VYe~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
++=.-.-|+|++-..+-|.-++=.|+.|+||||+.
T Consensus 173 l~L~RLiPlVE~~~~~~NyNliELgPRGTGKS~~f 207 (425)
T PHA01747 173 LTLPRLLPLFTSPVSKRPVHIIELSNRGTGKTTTF 207 (425)
T ss_pred HHHHhhhhheeccCCCCCeeEEEecCCCCChhhHH
Confidence 33344667777667788999999999999999974
No 370
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=23.40 E-value=82 Score=35.69 Aligned_cols=32 Identities=13% Similarity=0.398 Sum_probs=23.9
Q ss_pred EEEEecCCCCCCcccc-----CC------CchhhHHHHHHHHH
Q 002139 105 SIFAYGQTSSGKTYTM-----TG------ITECTVADIFDYIH 136 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM-----~G------Ii~rai~dLF~~I~ 136 (960)
.|+.-|.+|||||..| .| +.|..+..+.+.+.
T Consensus 3 ~vIiTGlSGaGKs~Al~~lED~Gy~cvDNlP~~Ll~~l~~~~~ 45 (284)
T PF03668_consen 3 LVIITGLSGAGKSTALRALEDLGYYCVDNLPPSLLPQLIELLA 45 (284)
T ss_pred EEEEeCCCcCCHHHHHHHHHhcCeeEEcCCcHHHHHHHHHHHH
Confidence 4677899999999998 34 66666666666655
No 371
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=23.38 E-value=46 Score=40.78 Aligned_cols=45 Identities=18% Similarity=0.271 Sum_probs=29.7
Q ss_pred eeecCeeeCCCCChHHHHHhhHHHHHHHHhCCCCEEEEEecCCCCCCcccc
Q 002139 70 AYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 70 ~F~FD~VF~~~atQeeVYe~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
.|.||.+++.+..-..+.+ .+.. +...+..|+-+|.+||||++.-
T Consensus 215 ~~~f~~iiG~S~~m~~~~~-----~i~~-~A~s~~pVLI~GE~GTGKe~~A 259 (538)
T PRK15424 215 RYVLGDLLGQSPQMEQVRQ-----TILL-YARSSAAVLIQGETGTGKELAA 259 (538)
T ss_pred ccchhheeeCCHHHHHHHH-----HHHH-HhCCCCcEEEECCCCCCHHHHH
Confidence 4778888776543333332 2222 3567889999999999998654
No 372
>PRK14532 adenylate kinase; Provisional
Probab=23.38 E-value=38 Score=34.72 Aligned_cols=16 Identities=19% Similarity=0.488 Sum_probs=13.5
Q ss_pred EEEEecCCCCCCcccc
Q 002139 105 SIFAYGQTSSGKTYTM 120 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (960)
.|+..|..|||||+.-
T Consensus 2 ~i~~~G~pGsGKsT~a 17 (188)
T PRK14532 2 NLILFGPPAAGKGTQA 17 (188)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999998764
No 373
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=23.31 E-value=4.2e+02 Score=24.08 Aligned_cols=36 Identities=25% Similarity=0.459 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002139 392 LRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMV 427 (960)
Q Consensus 392 l~ek~~~i~~le~ei~el~~q~d~~q~r~~~l~~~~ 427 (960)
+.....++..++.++.++...++.+...++.|...+
T Consensus 35 IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 35 IKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444455556666666666666666666555544
No 374
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.29 E-value=3.2e+02 Score=32.59 Aligned_cols=68 Identities=24% Similarity=0.229 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCch---hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 002139 362 VKHLQKELARLESELRSPAPASSTC---DYVALLRKKDLQ-IQKMEREIRELTKQRDLAQSRVEDLLRMVGC 429 (960)
Q Consensus 362 ik~Lq~Ei~~Le~eL~~~~~~~~~~---~~~~~l~ek~~~-i~~le~ei~el~~q~d~~q~r~~~l~~~~~~ 429 (960)
-+.+.+||.+|+..|....+..+.. ++.....+|..+ .--|+++|.+|++.+-.+..+|++|.+....
T Consensus 116 ~e~~erEv~~l~~llsr~~~~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl~~aE~~i~El~k~~~h 187 (542)
T KOG0993|consen 116 EEKLEREVKALMELLSRGQYQLDLENEMDKAKEDEEKLRELVTPMEKEINELKKKLAKAEQRIDELSKAKHH 187 (542)
T ss_pred HHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhhcc
Confidence 4556788888887775432221111 112222222222 2358999999999999999999988865443
No 375
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=23.28 E-value=2.5e+02 Score=29.41 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002139 395 KDLQIQKMEREIRELTKQRDLAQSRVEDLLR 425 (960)
Q Consensus 395 k~~~i~~le~ei~el~~q~d~~q~r~~~l~~ 425 (960)
.+.+|+++++++++.+.+.+.++.|.+++.+
T Consensus 159 ~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 159 LSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666666666666666666666554
No 376
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=23.27 E-value=94 Score=35.39 Aligned_cols=38 Identities=21% Similarity=0.338 Sum_probs=28.1
Q ss_pred CCEEEEEecCCCCCCccccCCCchhhHHHHHHHHHhcccccEEEEe
Q 002139 102 INSSIFAYGQTSSGKTYTMTGITECTVADIFDYIHRHEERAFVLKF 147 (960)
Q Consensus 102 ~N~tIfAYGqTGSGKTyTM~GIi~rai~dLF~~I~~~~~~~f~V~v 147 (960)
.-+||+..|-.|||||.- ++.|..++.......|.|.+
T Consensus 18 ~p~~ilVvGMAGSGKTTF--------~QrL~~hl~~~~~ppYviNL 55 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTF--------MQRLNSHLHAKKTPPYVINL 55 (366)
T ss_pred CCcEEEEEecCCCCchhH--------HHHHHHHHhhccCCCeEEeC
Confidence 356999999999999974 46677777766655666554
No 377
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=23.23 E-value=6e+02 Score=26.71 Aligned_cols=31 Identities=13% Similarity=0.350 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002139 397 LQIQKMEREIRELTKQRDLAQSRVEDLLRMV 427 (960)
Q Consensus 397 ~~i~~le~ei~el~~q~d~~q~r~~~l~~~~ 427 (960)
.+++.|++++..|.++....+...+.|...+
T Consensus 118 ~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im 148 (161)
T TIGR02894 118 KRNEELEKELEKLRQRLSTIEEDYQTLIDIM 148 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555544444444444444443
No 378
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=23.03 E-value=56 Score=43.98 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=16.7
Q ss_pred HHhCCCCEEEEEecCCCCCCcccc
Q 002139 97 SVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 97 svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
..+.+.. .|+..|+||||||+-+
T Consensus 84 ~ai~~~~-VviI~GeTGSGKTTql 106 (1294)
T PRK11131 84 EAIRDHQ-VVIVAGETGSGKTTQL 106 (1294)
T ss_pred HHHHhCC-eEEEECCCCCCHHHHH
Confidence 3445544 5667799999999866
No 379
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=22.88 E-value=63 Score=34.21 Aligned_cols=29 Identities=24% Similarity=0.228 Sum_probs=21.2
Q ss_pred HHHHHHhC-CC--CEEEEEecCCCCCCccccC
Q 002139 93 EIALSVVS-GI--NSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 93 plV~svL~-G~--N~tIfAYGqTGSGKTyTM~ 121 (960)
+-++.++. |+ ..++.-+|++|+|||+...
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~ 38 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCL 38 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHHH
Confidence 34566664 54 5678889999999998653
No 380
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=22.87 E-value=4.1e+02 Score=30.53 Aligned_cols=38 Identities=16% Similarity=0.340 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 002139 392 LRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGC 429 (960)
Q Consensus 392 l~ek~~~i~~le~ei~el~~q~d~~q~r~~~l~~~~~~ 429 (960)
+.+...+++.++..|++...++..++.++.++.+....
T Consensus 227 l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~ 264 (312)
T smart00787 227 LEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQ 264 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455555555555555555555666655555443
No 381
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=22.86 E-value=27 Score=41.71 Aligned_cols=27 Identities=22% Similarity=0.436 Sum_probs=19.7
Q ss_pred HhCCCCEEEEEecCCCCCCccccCCCchh
Q 002139 98 VVSGINSSIFAYGQTSSGKTYTMTGITEC 126 (960)
Q Consensus 98 vL~G~N~tIfAYGqTGSGKTyTM~GIi~r 126 (960)
+=.++|. +-.|++|+||||...++-+.
T Consensus 206 ve~~~Nl--i~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 206 VEPNYNL--IELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred HhcCCcE--EEECCCCCCHHHHHHHHhHH
Confidence 3366775 45699999999988765554
No 382
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=22.76 E-value=1e+03 Score=25.99 Aligned_cols=74 Identities=24% Similarity=0.400 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHhccccccceecccCCHHHHHHHHHHHHHHHHHHhcCCCCCCC------chhHHHHHHHHHHHHHHHH
Q 002139 330 VEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKELARLESELRSPAPASS------TCDYVALLRKKDLQIQKME 403 (960)
Q Consensus 330 ~eETlsTLrFAsrAK~Ikn~~~vN~~~s~~~lik~Lq~Ei~~Le~eL~~~~~~~~------~~~~~~~l~ek~~~i~~le 403 (960)
+...|..|+-|+.=++.. ...+--+|.+|+..|+.+-+......+ ...+...|++++.+|..|+
T Consensus 8 LQ~AL~~LQaa~ekRE~l----------E~rLR~~lE~EL~~lr~qq~~~~~~~~~~~~~~~~~L~~~LrEkEErILaLE 77 (205)
T PF12240_consen 8 LQQALAQLQAACEKREQL----------ERRLRTRLERELESLRAQQRQGNSSGSSSPSNNASNLKELLREKEERILALE 77 (205)
T ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 456677777776543221 234566788888888887665443321 2235677899999999999
Q ss_pred HHHHHHHHHH
Q 002139 404 REIRELTKQR 413 (960)
Q Consensus 404 ~ei~el~~q~ 413 (960)
.++...+...
T Consensus 78 ad~~kWEqkY 87 (205)
T PF12240_consen 78 ADMTKWEQKY 87 (205)
T ss_pred HHHHHHHHHH
Confidence 9988775443
No 383
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=22.72 E-value=3.3e+02 Score=33.72 Aligned_cols=55 Identities=20% Similarity=0.309 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002139 362 VKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVED 422 (960)
Q Consensus 362 ik~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~ek~~~i~~le~ei~el~~q~d~~q~r~~~ 422 (960)
++.+++++..|+..++..+-+ .+.++....+.+++.+++..++.++|.+++.+.+
T Consensus 310 ~e~lq~~~d~Lk~~Ie~Q~iS------~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~ 364 (581)
T KOG0995|consen 310 IEKLQKENDELKKQIELQGIS------GEDVERMNLERNKLKRELNKIQSELDRLSKEVWE 364 (581)
T ss_pred HHHHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566666666666555332 2233333444444555555555555544444433
No 384
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=22.68 E-value=4.8e+02 Score=25.48 Aligned_cols=33 Identities=21% Similarity=0.293 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002139 393 RKKDLQIQKMEREIRELTKQRDLAQSRVEDLLR 425 (960)
Q Consensus 393 ~ek~~~i~~le~ei~el~~q~d~~q~r~~~l~~ 425 (960)
.+...++..+.+|..+|+.+.+.+..++.++.+
T Consensus 25 ~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 25 EELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344445566666666666666666666665554
No 385
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=22.54 E-value=73 Score=40.39 Aligned_cols=17 Identities=35% Similarity=0.341 Sum_probs=14.8
Q ss_pred EEEEEecCCCCCCcccc
Q 002139 104 SSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (960)
++++-+|+||+|||++.
T Consensus 485 ~~~lf~Gp~GvGKT~lA 501 (731)
T TIGR02639 485 GSFLFTGPTGVGKTELA 501 (731)
T ss_pred eeEEEECCCCccHHHHH
Confidence 56888999999999875
No 386
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=22.47 E-value=2.9e+02 Score=34.47 Aligned_cols=41 Identities=32% Similarity=0.434 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc
Q 002139 394 KKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGCDQDSR 434 (960)
Q Consensus 394 ek~~~i~~le~ei~el~~q~d~~q~r~~~l~~~~~~~~~~~ 434 (960)
.++.+|+.++.+|..|++.+.....++++|.+.+..-..-+
T Consensus 471 ~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~ 511 (652)
T COG2433 471 RKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMR 511 (652)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667888999999999999999999999999988765333
No 387
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=22.44 E-value=4.1e+02 Score=27.92 Aligned_cols=12 Identities=33% Similarity=0.354 Sum_probs=5.9
Q ss_pred hHHHHHHHHHHh
Q 002139 278 LLTLSTVIRKLS 289 (960)
Q Consensus 278 L~aLg~VI~aLs 289 (960)
|.|+..|=..|+
T Consensus 30 L~AFeEvg~~L~ 41 (161)
T TIGR02894 30 LSAFEEVGRALN 41 (161)
T ss_pred HHHHHHHHHHHc
Confidence 444555555553
No 388
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=22.39 E-value=54 Score=43.54 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=21.0
Q ss_pred HHHHHHHhCCCCEEEEEecCCCCCCcccc
Q 002139 92 KEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 92 ~plV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
..+|..++.|.++.+.+ +||+|||.+-
T Consensus 466 ~eaI~aiL~GrDVLVim--PTGSGKSLcY 492 (1195)
T PLN03137 466 REIINATMSGYDVFVLM--PTGGGKSLTY 492 (1195)
T ss_pred HHHHHHHHcCCCEEEEc--CCCccHHHHH
Confidence 45677889999965555 9999999763
No 389
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=22.35 E-value=1.7e+02 Score=33.50 Aligned_cols=9 Identities=11% Similarity=0.110 Sum_probs=3.6
Q ss_pred hhhHhhhch
Q 002139 734 IQTFVAGLN 742 (960)
Q Consensus 734 ~~~~v~~l~ 742 (960)
+.++|..+.
T Consensus 245 ~L~~~~q~~ 253 (314)
T PF04111_consen 245 FLDCLQQLA 253 (314)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334444443
No 390
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=22.33 E-value=27 Score=37.53 Aligned_cols=12 Identities=33% Similarity=0.443 Sum_probs=10.8
Q ss_pred ecCCCCCCcccc
Q 002139 109 YGQTSSGKTYTM 120 (960)
Q Consensus 109 YGqTGSGKTyTM 120 (960)
-|++|||||+++
T Consensus 5 ~G~sGSGKTTla 16 (220)
T cd02025 5 AGSVAVGKSTTA 16 (220)
T ss_pred eCCCCCCHHHHH
Confidence 499999999986
No 391
>PRK06851 hypothetical protein; Provisional
Probab=22.20 E-value=52 Score=38.49 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=0.0
Q ss_pred hHHHHHHHHhCCCCEEEEEecCCCCCCcccc
Q 002139 90 GAKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 90 ~v~plV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
+...+.++++.|.+-.++--|.+|+|||++|
T Consensus 17 Gf~s~~~~~~~~~~~~~il~G~pGtGKStl~ 47 (367)
T PRK06851 17 GFYSLYDSIIDGANRIFILKGGPGTGKSTLM 47 (367)
T ss_pred chhhhhhhhccccceEEEEECCCCCCHHHHH
No 392
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=22.19 E-value=4.1e+02 Score=29.28 Aligned_cols=52 Identities=23% Similarity=0.337 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002139 360 ALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRV 420 (960)
Q Consensus 360 ~lik~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~ek~~~i~~le~ei~el~~q~d~~q~r~ 420 (960)
..+.+|++|+..|..|-. .....|++...-|..|+..|++.+.+++..+..+
T Consensus 32 ~~L~e~~kE~~~L~~Er~---------~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i 83 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERM---------AHVEELRQINQDINTLENIIKQAESERNKRQEKI 83 (230)
T ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777888877776542 2344555555556666666665555555444333
No 393
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=22.14 E-value=53 Score=38.75 Aligned_cols=26 Identities=31% Similarity=0.281 Sum_probs=20.0
Q ss_pred HHHHHHhCCCCEEEEEecCCCCCCcccc
Q 002139 93 EIALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 93 plV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
..+..++.|.++...| +||||||-+.
T Consensus 90 ~aiP~~L~g~dvIglA--eTGSGKT~af 115 (476)
T KOG0330|consen 90 EAIPVALGGRDVIGLA--ETGSGKTGAF 115 (476)
T ss_pred hhcchhhCCCcEEEEe--ccCCCchhhh
Confidence 3455778999986665 9999999665
No 394
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=22.00 E-value=36 Score=37.21 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=16.5
Q ss_pred HhCCCCEE------EEEecCCCCCCcccc
Q 002139 98 VVSGINSS------IFAYGQTSSGKTYTM 120 (960)
Q Consensus 98 vL~G~N~t------IfAYGqTGSGKTyTM 120 (960)
++.|.|-. +.-.|++|||||+-|
T Consensus 20 ~L~~v~l~i~~Ge~vaI~GpSGSGKSTLL 48 (226)
T COG1136 20 ALKDVNLEIEAGEFVAIVGPSGSGKSTLL 48 (226)
T ss_pred ecccceEEEcCCCEEEEECCCCCCHHHHH
Confidence 44555543 456799999999876
No 395
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=21.99 E-value=48 Score=40.49 Aligned_cols=46 Identities=15% Similarity=0.333 Sum_probs=30.5
Q ss_pred ceeecCeeeCCCCChHHHHHhhHHHHHHHHhCCCCEEEEEecCCCCCCcccc
Q 002139 69 SAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 69 ~~F~FD~VF~~~atQeeVYe~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
..|.||.+++.+..-..+.+ .+.. +...+..|+-+|.+||||++..
T Consensus 207 ~~~~f~~iiG~S~~m~~~~~-----~i~~-~A~~~~pVLI~GE~GTGKe~lA 252 (526)
T TIGR02329 207 TRYRLDDLLGASAPMEQVRA-----LVRL-YARSDATVLILGESGTGKELVA 252 (526)
T ss_pred cccchhheeeCCHHHHHHHH-----HHHH-HhCCCCcEEEECCCCcCHHHHH
Confidence 35888888876543333332 2222 3566889999999999997654
No 396
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=21.81 E-value=4.8e+02 Score=35.11 Aligned_cols=47 Identities=15% Similarity=0.198 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhccccccceecccCCHHHHHHHHHHHHHHHHHHhcCCCCC
Q 002139 333 TRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKELARLESELRSPAPA 382 (960)
Q Consensus 333 TlsTLrFAsrAK~Ikn~~~vN~~~s~~~lik~Lq~Ei~~Le~eL~~~~~~ 382 (960)
+..|=+|-.+|+.|+.....- ...+-..++++.+...+.-|.....+
T Consensus 1177 ~~rt~rl~~~A~~l~~tGv~g---ay~s~f~~me~kl~~ir~il~~~svs 1223 (1758)
T KOG0994|consen 1177 ALRTHRLINRAKELKQTGVLG---AYASRFLDMEEKLEEIRAILSAPSVS 1223 (1758)
T ss_pred HHHHHHHHHHHHHhhhccCch---hhHhHHHHHHHHHHHHHHHhcCCCcc
Confidence 556777888999998776654 34455677777777777777655443
No 397
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=21.60 E-value=38 Score=42.74 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=17.2
Q ss_pred CEEEEEecCCCCCCccccCC
Q 002139 103 NSSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~G 122 (960)
|.-++..|.||||||++|.-
T Consensus 434 ~~n~~I~G~tGsGKS~~~~~ 453 (785)
T TIGR00929 434 LGHTLIFGPTGSGKTTLLNF 453 (785)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 67788899999999999844
No 398
>PRK10884 SH3 domain-containing protein; Provisional
Probab=21.54 E-value=2.4e+02 Score=30.58 Aligned_cols=34 Identities=21% Similarity=0.210 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002139 393 RKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRM 426 (960)
Q Consensus 393 ~ek~~~i~~le~ei~el~~q~d~~q~r~~~l~~~ 426 (960)
.+.+.+.++|.+++..++.+++.++.+++++.+.
T Consensus 135 ~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 135 NGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566677777777777777777777666643
No 399
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=21.43 E-value=41 Score=34.73 Aligned_cols=16 Identities=31% Similarity=0.501 Sum_probs=13.1
Q ss_pred EEEEecCCCCCCcccc
Q 002139 105 SIFAYGQTSSGKTYTM 120 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (960)
.|+-.|++|||||+.+
T Consensus 4 ~i~l~G~sGsGKsTl~ 19 (186)
T PRK10078 4 LIWLMGPSGSGKDSLL 19 (186)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4666899999999764
No 400
>PRK06762 hypothetical protein; Provisional
Probab=21.30 E-value=46 Score=33.35 Aligned_cols=15 Identities=40% Similarity=0.479 Sum_probs=12.2
Q ss_pred EEEEecCCCCCCccc
Q 002139 105 SIFAYGQTSSGKTYT 119 (960)
Q Consensus 105 tIfAYGqTGSGKTyT 119 (960)
.|.-.|..|||||+.
T Consensus 4 li~i~G~~GsGKST~ 18 (166)
T PRK06762 4 LIIIRGNSGSGKTTI 18 (166)
T ss_pred EEEEECCCCCCHHHH
Confidence 466689999999874
No 401
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=21.27 E-value=52 Score=40.88 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=19.4
Q ss_pred HHHHHhCCC-CEEEEEecCCCCCCcccc
Q 002139 94 IALSVVSGI-NSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 94 lV~svL~G~-N~tIfAYGqTGSGKTyTM 120 (960)
+...+-.|. .-.++-||+.|+|||.+.
T Consensus 36 L~~~~~~gri~ha~L~~Gp~GvGKTt~A 63 (598)
T PRK09111 36 LTNAFETGRIAQAFMLTGVRGVGKTTTA 63 (598)
T ss_pred HHHHHHcCCCCceEEEECCCCCCHHHHH
Confidence 333444564 346888999999999886
No 402
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=21.20 E-value=85 Score=39.34 Aligned_cols=84 Identities=19% Similarity=0.273 Sum_probs=53.5
Q ss_pred eeecCeeeCCCCChHHHHHhhHHHHHHHHhCCCCEEEEEecCCCCCCccccCCCch-------------hhHHHHHHHHH
Q 002139 70 AYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITE-------------CTVADIFDYIH 136 (960)
Q Consensus 70 ~F~FD~VF~~~atQeeVYe~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~GIi~-------------rai~dLF~~I~ 136 (960)
.|....=|.+...|...|.. ++..+-+|.... +.+|.+|||||+++..+.. .....+++.+.
T Consensus 4 ~~~~~~~~~~~~~Q~~ai~~----l~~~~~~~~~~~-ll~Gl~gs~ka~lia~l~~~~~r~vLIVt~~~~~A~~l~~dL~ 78 (652)
T PRK05298 4 PFKLVSPYKPAGDQPQAIEE----LVEGIEAGEKHQ-TLLGVTGSGKTFTMANVIARLQRPTLVLAHNKTLAAQLYSEFK 78 (652)
T ss_pred CcccccCCCCChHHHHHHHH----HHHhhhcCCCcE-EEEcCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHH
Confidence 46666668888889888876 344444554333 3789999999999854221 12445555554
Q ss_pred hc-ccccEEEEeehhheecchhc
Q 002139 137 RH-EERAFVLKFSAMEIYNEAIR 158 (960)
Q Consensus 137 ~~-~~~~f~V~vS~lEIYNE~V~ 158 (960)
.. ++..+.+.+||+--|.-..|
T Consensus 79 ~~~~~~~v~~f~s~~~~~~~~~~ 101 (652)
T PRK05298 79 EFFPENAVEYFVSYYDYYQPEAY 101 (652)
T ss_pred HhcCCCeEEEeCChhhccCcccc
Confidence 33 33446677788877765544
No 403
>PRK04040 adenylate kinase; Provisional
Probab=21.09 E-value=43 Score=35.15 Aligned_cols=16 Identities=25% Similarity=0.381 Sum_probs=13.9
Q ss_pred EEEEecCCCCCCcccc
Q 002139 105 SIFAYGQTSSGKTYTM 120 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (960)
.|+.+|..|||||+..
T Consensus 4 ~i~v~G~pG~GKtt~~ 19 (188)
T PRK04040 4 VVVVTGVPGVGKTTVL 19 (188)
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4788999999999875
No 404
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=21.07 E-value=44 Score=42.27 Aligned_cols=35 Identities=14% Similarity=0.150 Sum_probs=24.3
Q ss_pred HHHHHHhCCCCEEEEEecCCCCCCccccCCCchhh
Q 002139 93 EIALSVVSGINSSIFAYGQTSSGKTYTMTGITECT 127 (960)
Q Consensus 93 plV~svL~G~N~tIfAYGqTGSGKTyTM~GIi~ra 127 (960)
.++.-+..+....++-||++|+|||+...|+..++
T Consensus 193 ~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 193 RTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred HHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34444445555567889999999999987754443
No 405
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=21.07 E-value=3.3e+02 Score=34.15 Aligned_cols=16 Identities=31% Similarity=0.383 Sum_probs=13.4
Q ss_pred EEEEecCCCCCCcccc
Q 002139 105 SIFAYGQTSSGKTYTM 120 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (960)
+++-+|+.|+|||..|
T Consensus 30 ~~~i~G~Ng~GKttll 45 (650)
T TIGR03185 30 IILIGGLNGAGKTTLL 45 (650)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4557899999999887
No 406
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=21.02 E-value=1.1e+02 Score=36.72 Aligned_cols=20 Identities=40% Similarity=0.398 Sum_probs=16.6
Q ss_pred CEEEEEecCCCCCCccccCC
Q 002139 103 NSSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~G 122 (960)
...|+..|.+|+|||+|..-
T Consensus 100 ~~vi~lvG~~GvGKTTtaaK 119 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTK 119 (429)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 46788899999999999743
No 407
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=21.00 E-value=41 Score=32.95 Aligned_cols=21 Identities=19% Similarity=0.377 Sum_probs=16.7
Q ss_pred CCCCEEEEEecCCCCCCcccc
Q 002139 100 SGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM 120 (960)
...+.-|+-+|..||||++..
T Consensus 18 a~~~~pvli~GE~GtGK~~~A 38 (138)
T PF14532_consen 18 AKSSSPVLITGEPGTGKSLLA 38 (138)
T ss_dssp HCSSS-EEEECCTTSSHHHHH
T ss_pred hCCCCcEEEEcCCCCCHHHHH
Confidence 367777889999999998864
No 408
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=20.97 E-value=40 Score=39.23 Aligned_cols=13 Identities=31% Similarity=0.491 Sum_probs=11.6
Q ss_pred EecCCCCCCcccc
Q 002139 108 AYGQTSSGKTYTM 120 (960)
Q Consensus 108 AYGqTGSGKTyTM 120 (960)
-.|++|||||+++
T Consensus 36 lLGPSGcGKTTlL 48 (352)
T COG3842 36 LLGPSGCGKTTLL 48 (352)
T ss_pred EECCCCCCHHHHH
Confidence 4599999999987
No 409
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=20.84 E-value=44 Score=35.61 Aligned_cols=16 Identities=25% Similarity=0.333 Sum_probs=13.0
Q ss_pred EEEecCCCCCCccccC
Q 002139 106 IFAYGQTSSGKTYTMT 121 (960)
Q Consensus 106 IfAYGqTGSGKTyTM~ 121 (960)
+.-.|+.|||||.+|-
T Consensus 28 ~~ivGpNGaGKSTll~ 43 (212)
T cd03274 28 SAIVGPNGSGKSNVID 43 (212)
T ss_pred EEEECCCCCCHHHHHH
Confidence 3456999999999983
No 410
>PRK02496 adk adenylate kinase; Provisional
Probab=20.84 E-value=56 Score=33.44 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=19.6
Q ss_pred EEEecCCCCCCcccc------CCCchhhHHHHHHH
Q 002139 106 IFAYGQTSSGKTYTM------TGITECTVADIFDY 134 (960)
Q Consensus 106 IfAYGqTGSGKTyTM------~GIi~rai~dLF~~ 134 (960)
|+..|+.|||||+.. .|+....+.+++..
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~ 38 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQ 38 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHH
Confidence 667899999998764 35544445555543
No 411
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=20.81 E-value=45 Score=39.52 Aligned_cols=18 Identities=44% Similarity=0.553 Sum_probs=15.3
Q ss_pred CEEEEEecCCCCCCcccc
Q 002139 103 NSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 103 N~tIfAYGqTGSGKTyTM 120 (960)
...|+-+|+||+|||+..
T Consensus 108 ~~~iLl~Gp~GtGKT~lA 125 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLA 125 (412)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 356899999999999875
No 412
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=20.80 E-value=53 Score=38.92 Aligned_cols=52 Identities=33% Similarity=0.417 Sum_probs=33.2
Q ss_pred CceeecCeeeCCCCChHHHHHhhHH-------HHHH----HHhCCCCEEEEEecCCCCCCc--cccCCCc
Q 002139 68 PSAYTFDRVFWGDCSTTQVYEDGAK-------EIAL----SVVSGINSSIFAYGQTSSGKT--YTMTGIT 124 (960)
Q Consensus 68 ~~~F~FD~VF~~~atQeeVYe~~v~-------plV~----svL~G~N~tIfAYGqTGSGKT--yTM~GIi 124 (960)
+-..+||..|... .+|.+.+-+ |+-. =+|+|.+.+-.| |||+||| |.|.|++
T Consensus 216 nP~ctFddAFq~~---pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVA--QTgtgKtL~~L~pg~i 280 (629)
T KOG0336|consen 216 NPVCTFDDAFQCY---PEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVA--QTGTGKTLAFLLPGFI 280 (629)
T ss_pred CCcCcHHHHHhhh---HHHHHHHHhccCCCCCcchhcccceeecCcceEEEE--ecCCCcCHHHhcccee
Confidence 3478899988643 344444322 1111 247899987666 9999999 6667743
No 413
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=20.79 E-value=49 Score=37.65 Aligned_cols=42 Identities=24% Similarity=0.522 Sum_probs=27.9
Q ss_pred EEEEecCCCCCCccccCCCchhhHHHHHHHHHhcccccEEEEeehhheecchhcccCC
Q 002139 105 SIFAYGQTSSGKTYTMTGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLS 162 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM~GIi~rai~dLF~~I~~~~~~~f~V~vS~lEIYNE~V~DLL~ 162 (960)
.|+-.|+||||||-.-.- +.+. ..-.|.+=.++||.+ .|...
T Consensus 6 ii~I~GpTasGKS~LAl~------------LA~~--~~eIIsaDS~QvYr~--ldIgT 47 (300)
T PRK14729 6 IVFIFGPTAVGKSNILFH------------FPKG--KAEIINVDSIQVYKE--FDIAS 47 (300)
T ss_pred EEEEECCCccCHHHHHHH------------HHHh--CCcEEeccHHHHHCC--Cceec
Confidence 588899999999964211 1111 124788888999976 45553
No 414
>PRK14530 adenylate kinase; Provisional
Probab=20.77 E-value=44 Score=35.34 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=13.4
Q ss_pred EEEEecCCCCCCcccc
Q 002139 105 SIFAYGQTSSGKTYTM 120 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (960)
.|+-.|++|||||+..
T Consensus 5 ~I~i~G~pGsGKsT~~ 20 (215)
T PRK14530 5 RILLLGAPGAGKGTQS 20 (215)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4777999999999765
No 415
>PRK03839 putative kinase; Provisional
Probab=20.71 E-value=44 Score=34.06 Aligned_cols=14 Identities=36% Similarity=0.370 Sum_probs=12.2
Q ss_pred EEEecCCCCCCccc
Q 002139 106 IFAYGQTSSGKTYT 119 (960)
Q Consensus 106 IfAYGqTGSGKTyT 119 (960)
|+-.|..|||||+.
T Consensus 3 I~l~G~pGsGKsT~ 16 (180)
T PRK03839 3 IAITGTPGVGKTTV 16 (180)
T ss_pred EEEECCCCCCHHHH
Confidence 67789999999875
No 416
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=20.70 E-value=82 Score=37.49 Aligned_cols=30 Identities=30% Similarity=0.293 Sum_probs=25.4
Q ss_pred HHHHHHHHhCCCCEEEEEecCCCCCCcccc
Q 002139 91 AKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 91 v~plV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
...-++.+-+|....-|..|.-||||||.+
T Consensus 37 l~~~l~~v~~G~s~~kfi~G~YGsGKTf~l 66 (416)
T PF10923_consen 37 LDRDLDRVADGGSSFKFIRGEYGSGKTFFL 66 (416)
T ss_pred HHHHHHHHhCCCCeEEEEEeCCCCcHHHHH
Confidence 333467788999999999999999999986
No 417
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=20.69 E-value=64 Score=42.63 Aligned_cols=23 Identities=26% Similarity=0.153 Sum_probs=16.9
Q ss_pred EEEEEecCCCCCCcccc-------CCCchh
Q 002139 104 SSIFAYGQTSSGKTYTM-------TGITEC 126 (960)
Q Consensus 104 ~tIfAYGqTGSGKTyTM-------~GIi~r 126 (960)
+.+.-+|+||||||..+ +|-.|+
T Consensus 31 ~l~~I~G~tGaGKStildai~~aLyg~~~r 60 (1047)
T PRK10246 31 GLFAITGPTGAGKTTLLDAICLALYHETPR 60 (1047)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhcCCCCC
Confidence 34556799999999865 566665
No 418
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=20.59 E-value=49 Score=42.21 Aligned_cols=16 Identities=25% Similarity=0.198 Sum_probs=13.8
Q ss_pred EEEEecCCCCCCcccc
Q 002139 105 SIFAYGQTSSGKTYTM 120 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (960)
.++-||++|+|||+..
T Consensus 349 ~lll~GppG~GKT~lA 364 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLG 364 (775)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5778999999999765
No 419
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=20.59 E-value=93 Score=40.32 Aligned_cols=18 Identities=28% Similarity=0.326 Sum_probs=15.4
Q ss_pred EEEEEecCCCCCCccccC
Q 002139 104 SSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 104 ~tIfAYGqTGSGKTyTM~ 121 (960)
++++-+|+||+|||+...
T Consensus 597 ~~~lf~Gp~GvGKT~lA~ 614 (852)
T TIGR03345 597 GVFLLVGPSGVGKTETAL 614 (852)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 568889999999999863
No 420
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=20.56 E-value=1e+02 Score=34.86 Aligned_cols=17 Identities=18% Similarity=0.425 Sum_probs=14.8
Q ss_pred EEEEecCCCCCCccccC
Q 002139 105 SIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM~ 121 (960)
.|+-.|.+|||||..+.
T Consensus 8 ~i~i~G~~GsGKtt~~~ 24 (288)
T PRK05416 8 LVIVTGLSGAGKSVALR 24 (288)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 57889999999999873
No 421
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=20.53 E-value=78 Score=34.12 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=19.6
Q ss_pred HHHHHHhC-CC--CEEEEEecCCCCCCccc
Q 002139 93 EIALSVVS-GI--NSSIFAYGQTSSGKTYT 119 (960)
Q Consensus 93 plV~svL~-G~--N~tIfAYGqTGSGKTyT 119 (960)
+-++.++. |+ ..+++.+|++|||||.-
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~l 37 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIF 37 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHH
Confidence 34566665 43 56888999999999853
No 422
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=20.49 E-value=44 Score=39.64 Aligned_cols=17 Identities=47% Similarity=0.569 Sum_probs=15.2
Q ss_pred EEEEEecCCCCCCcccc
Q 002139 104 SSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (960)
+.|+-+|+||+|||+..
T Consensus 117 ~~iLL~GP~GsGKT~lA 133 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLA 133 (413)
T ss_pred ceEEEECCCCcCHHHHH
Confidence 57999999999999875
No 423
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=20.39 E-value=42 Score=38.86 Aligned_cols=15 Identities=20% Similarity=0.474 Sum_probs=12.9
Q ss_pred EEEecCCCCCCcccc
Q 002139 106 IFAYGQTSSGKTYTM 120 (960)
Q Consensus 106 IfAYGqTGSGKTyTM 120 (960)
+.-.|++|+|||++|
T Consensus 32 ~vllGPSGcGKSTlL 46 (338)
T COG3839 32 VVLLGPSGCGKSTLL 46 (338)
T ss_pred EEEECCCCCCHHHHH
Confidence 455699999999998
No 424
>PRK14527 adenylate kinase; Provisional
Probab=20.37 E-value=50 Score=34.16 Aligned_cols=30 Identities=20% Similarity=0.393 Sum_probs=20.2
Q ss_pred EEEEEecCCCCCCcccc------CCCchhhHHHHHH
Q 002139 104 SSIFAYGQTSSGKTYTM------TGITECTVADIFD 133 (960)
Q Consensus 104 ~tIfAYGqTGSGKTyTM------~GIi~rai~dLF~ 133 (960)
-.|+.+|++|||||+.. .|+......+++.
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r 42 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILR 42 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHH
Confidence 46889999999998754 2544444444443
No 425
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=20.24 E-value=46 Score=35.19 Aligned_cols=19 Identities=21% Similarity=0.396 Sum_probs=15.0
Q ss_pred EEEEEecCCCCCCccccCC
Q 002139 104 SSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 104 ~tIfAYGqTGSGKTyTM~G 122 (960)
..+.-.|++|||||..|..
T Consensus 29 ~~~~i~G~NGsGKSTll~~ 47 (213)
T cd03279 29 GLFLICGPTGAGKSTILDA 47 (213)
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 3456789999999998744
No 426
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=20.22 E-value=48 Score=37.27 Aligned_cols=15 Identities=33% Similarity=0.727 Sum_probs=13.0
Q ss_pred EEEEecCCCCCCccc
Q 002139 105 SIFAYGQTSSGKTYT 119 (960)
Q Consensus 105 tIfAYGqTGSGKTyT 119 (960)
.++.||+.|+|||..
T Consensus 207 GvLmYGPPGTGKTlm 221 (424)
T KOG0652|consen 207 GVLMYGPPGTGKTLM 221 (424)
T ss_pred ceEeeCCCCCcHHHH
Confidence 589999999999853
No 427
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.15 E-value=5.8e+02 Score=28.55 Aligned_cols=82 Identities=18% Similarity=0.280 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHhccccccceecccCCHHHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 002139 330 VEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIREL 409 (960)
Q Consensus 330 ~eETlsTLrFAsrAK~Ikn~~~vN~~~s~~~lik~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~ek~~~i~~le~ei~el 409 (960)
+.-++.++.++.....+...-+.-.......+ .|.+++..+++++ .++..+++.+++.+...
T Consensus 22 ~s~~~~~~l~~~~~a~~~q~~k~~~~~~~r~~--~L~~e~~s~Q~~~----------------~~L~~ev~~~~~~~~s~ 83 (247)
T COG3879 22 LSISLAMLLAGVMLAAVFQTSKGESVRRARDL--DLVKELRSLQKKV----------------NTLAAEVEDLENKLDSV 83 (247)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCcchhhhhhh--HHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHH
Confidence 34466677777666655555444333322222 4455554444432 23444555555555555
Q ss_pred H----HHHHHHHHHHHHHHHHhcc
Q 002139 410 T----KQRDLAQSRVEDLLRMVGC 429 (960)
Q Consensus 410 ~----~q~d~~q~r~~~l~~~~~~ 429 (960)
+ .....++.+++-|...+|.
T Consensus 84 ~~~~~t~~~~ie~~l~~l~~~aG~ 107 (247)
T COG3879 84 RRSVLTDDAALEDRLEKLRMLAGS 107 (247)
T ss_pred HHhHHhHHHHHHHHHHHHHHHhcc
Confidence 5 2233344455555554544
No 428
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=20.14 E-value=50 Score=34.11 Aligned_cols=93 Identities=14% Similarity=0.261 Sum_probs=49.3
Q ss_pred CCCCEEEEEecCCCCCCccccCCCchhhHHHHHHHHHhcccccEEEEeehhheecchhc-ccCCCCC--------CCcee
Q 002139 100 SGINSSIFAYGQTSSGKTYTMTGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIR-DLLSTDN--------TPLRL 170 (960)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM~GIi~rai~dLF~~I~~~~~~~f~V~vS~lEIYNE~V~-DLL~~~~--------~~L~i 170 (960)
..++..|+-+|.+||||+.. .+.|++..... +.. -|.|.+-.+..+.+- .|+.... ...-+
T Consensus 19 a~~~~pVlI~GE~GtGK~~l--------A~~IH~~s~r~-~~p-fi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~ 88 (168)
T PF00158_consen 19 ASSDLPVLITGETGTGKELL--------ARAIHNNSPRK-NGP-FISVNCAALPEELLESELFGHEKGAFTGARSDKKGL 88 (168)
T ss_dssp TTSTS-EEEECSTTSSHHHH--------HHHHHHCSTTT-TS--EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHH
T ss_pred hCCCCCEEEEcCCCCcHHHH--------HHHHHHhhhcc-cCC-eEEEehhhhhcchhhhhhhccccccccccccccCCc
Confidence 47889999999999999754 33344322221 222 345555555544332 2332111 01123
Q ss_pred eeCCCCC-eEeccceEEEeCCHHHHHHHHHHHh
Q 002139 171 LDDPEKG-VVVEKVTEEILKDWNHLKELLSICE 202 (960)
Q Consensus 171 ~ed~~~g-v~V~gLte~~V~S~ee~~~lL~~g~ 202 (960)
.+...+| .++.++.......-..++++|+.+.
T Consensus 89 l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~ 121 (168)
T PF00158_consen 89 LEQANGGTLFLDEIEDLPPELQAKLLRVLEEGK 121 (168)
T ss_dssp HHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSE
T ss_pred eeeccceEEeecchhhhHHHHHHHHHHHHhhch
Confidence 3444555 5677777777666677777776544
No 429
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=20.04 E-value=40 Score=31.55 Aligned_cols=15 Identities=20% Similarity=0.401 Sum_probs=12.3
Q ss_pred EEEecCCCCCCcccc
Q 002139 106 IFAYGQTSSGKTYTM 120 (960)
Q Consensus 106 IfAYGqTGSGKTyTM 120 (960)
|.-.|.+|+|||..+
T Consensus 2 V~iiG~~~~GKSTli 16 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLI 16 (116)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999998764
No 430
>PRK00846 hypothetical protein; Provisional
Probab=20.00 E-value=7.1e+02 Score=23.11 Aligned_cols=51 Identities=12% Similarity=0.039 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002139 364 HLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDL 423 (960)
Q Consensus 364 ~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~ek~~~i~~le~ei~el~~q~d~~q~r~~~l 423 (960)
.+...|..|+..+.-. ...+.+.+..+-+..++|..|+.++..+..++.++
T Consensus 10 ~le~Ri~~LE~rlAfQ---------e~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 10 ALEARLVELETRLSFQ---------EQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred hHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566667777665221 12233333344444445555555555444444443
Done!