Query 002140
Match_columns 960
No_of_seqs 386 out of 2002
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 14:03:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002140.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002140hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y65_A Kinesin, kinesin heavy 100.0 4.6E-86 1.6E-90 739.1 26.3 341 19-373 7-360 (365)
2 3b6u_A Kinesin-like protein KI 100.0 1.1E-85 3.7E-90 737.1 29.3 344 20-366 18-372 (372)
3 1goj_A Kinesin, kinesin heavy 100.0 3.8E-85 1.3E-89 729.6 25.8 330 20-359 3-343 (355)
4 3bfn_A Kinesin-like protein KI 100.0 4.1E-85 1.4E-89 735.2 24.3 337 18-361 16-362 (388)
5 1t5c_A CENP-E protein, centrom 100.0 2.5E-84 8.5E-89 721.6 27.9 330 21-359 2-341 (349)
6 2vvg_A Kinesin-2; motor protei 100.0 5.8E-84 2E-88 718.6 27.5 332 22-358 3-347 (350)
7 3cob_A Kinesin heavy chain-lik 100.0 9.2E-84 3.1E-88 721.2 27.5 339 22-374 4-352 (369)
8 1x88_A Kinesin-like protein KI 100.0 1E-83 3.5E-88 719.2 23.3 331 20-354 5-358 (359)
9 1bg2_A Kinesin; motor protein, 100.0 5.4E-83 1.8E-87 705.0 27.5 312 20-346 4-325 (325)
10 2zfi_A Kinesin-like protein KI 100.0 4.5E-83 1.5E-87 715.7 26.7 329 23-354 4-362 (366)
11 2wbe_C Bipolar kinesin KRP-130 100.0 6.7E-83 2.3E-87 715.6 26.2 333 19-357 19-372 (373)
12 2owm_A Nckin3-434, related to 100.0 1.6E-82 5.5E-87 725.8 28.7 333 20-355 35-422 (443)
13 4a14_A Kinesin, kinesin-like p 100.0 3E-82 1E-86 704.2 28.7 322 15-344 3-344 (344)
14 3lre_A Kinesin-like protein KI 100.0 2.5E-82 8.5E-87 707.2 27.8 322 22-346 9-355 (355)
15 3gbj_A KIF13B protein; kinesin 100.0 6.7E-81 2.3E-85 695.4 24.3 321 24-345 2-349 (354)
16 2heh_A KIF2C protein; kinesin, 100.0 2E-80 6.8E-85 696.9 26.1 319 19-349 47-385 (387)
17 3nwn_A Kinesin-like protein KI 100.0 2.1E-80 7.1E-85 692.2 24.7 318 19-346 20-359 (359)
18 2h58_A Kinesin-like protein KI 100.0 5.7E-80 1.9E-84 682.2 25.7 314 22-347 3-329 (330)
19 1ry6_A Internal kinesin; kines 100.0 3.6E-80 1.2E-84 690.4 23.2 322 24-355 1-340 (360)
20 1v8k_A Kinesin-like protein KI 100.0 5.1E-80 1.7E-84 697.6 24.6 320 20-351 68-407 (410)
21 3t0q_A AGR253WP; kinesin, alph 100.0 5.1E-80 1.8E-84 687.3 23.2 321 22-350 4-348 (349)
22 2rep_A Kinesin-like protein KI 100.0 1.7E-79 5.8E-84 688.2 27.4 319 21-346 20-376 (376)
23 2nr8_A Kinesin-like protein KI 100.0 1.5E-79 5.1E-84 685.0 24.5 319 18-346 18-358 (358)
24 1f9v_A Kinesin-like protein KA 100.0 6.7E-80 2.3E-84 685.7 20.8 319 23-351 3-346 (347)
25 3u06_A Protein claret segregat 100.0 6.2E-78 2.1E-82 682.6 27.9 323 22-356 58-393 (412)
26 3dc4_A Kinesin-like protein NO 100.0 8.5E-78 2.9E-82 667.7 26.8 310 14-351 13-340 (344)
27 4etp_A Kinesin-like protein KA 100.0 7.2E-78 2.4E-82 681.2 23.1 321 22-351 58-402 (403)
28 4h1g_A Maltose binding protein 100.0 1.3E-73 4.4E-78 687.9 25.6 338 2-347 354-712 (715)
29 2kin_B Kinesin; motor protein, 100.0 5.4E-30 1.8E-34 237.7 6.0 99 271-369 1-99 (100)
30 3kin_B Kinesin heavy chain; mo 99.9 3.2E-28 1.1E-32 232.1 9.4 99 275-373 1-99 (117)
31 2o0a_A S.cerevisiae chromosome 99.9 3.2E-23 1.1E-27 221.9 6.6 263 23-352 24-295 (298)
32 3ec2_A DNA replication protein 92.8 0.025 8.4E-07 55.6 0.7 52 70-122 6-57 (180)
33 2w58_A DNAI, primosome compone 91.2 0.072 2.5E-06 53.0 2.0 52 70-122 21-73 (202)
34 2qgz_A Helicase loader, putati 89.0 0.13 4.3E-06 55.9 1.8 52 71-123 121-172 (308)
35 3t15_A Ribulose bisphosphate c 81.7 0.52 1.8E-05 50.5 2.1 48 73-120 2-53 (293)
36 1jbk_A CLPB protein; beta barr 81.6 0.63 2.2E-05 44.3 2.4 32 91-122 31-62 (195)
37 4etp_B Spindle POLE BODY-assoc 80.5 11 0.00038 41.5 11.7 119 22-164 58-183 (333)
38 4b4t_M 26S protease regulatory 80.1 0.76 2.6E-05 52.7 2.8 51 70-120 177-232 (434)
39 2r62_A Cell division protease 79.6 0.6 2.1E-05 48.4 1.6 51 70-121 7-62 (268)
40 2bjv_A PSP operon transcriptio 79.5 0.56 1.9E-05 48.8 1.4 45 70-120 2-46 (265)
41 2p65_A Hypothetical protein PF 78.9 0.73 2.5E-05 44.0 1.9 31 91-121 31-61 (187)
42 3bos_A Putative DNA replicatio 78.3 0.98 3.4E-05 45.1 2.7 48 70-122 24-71 (242)
43 1l8q_A Chromosomal replication 78.2 0.99 3.4E-05 48.4 2.8 51 69-122 6-56 (324)
44 3h4m_A Proteasome-activating n 78.0 0.73 2.5E-05 48.2 1.7 52 70-121 13-69 (285)
45 4b4t_K 26S protease regulatory 77.3 1.5 5.1E-05 50.2 4.1 51 70-120 168-223 (428)
46 3uk6_A RUVB-like 2; hexameric 76.9 1.2 4.1E-05 48.2 3.1 47 70-121 40-88 (368)
47 1d2n_A N-ethylmaleimide-sensit 76.7 1.2 4.2E-05 46.4 2.9 22 100-121 61-82 (272)
48 1g8p_A Magnesium-chelatase 38 76.5 0.73 2.5E-05 49.4 1.2 45 69-121 19-63 (350)
49 3cf0_A Transitional endoplasmi 76.2 0.88 3E-05 48.7 1.7 52 70-121 11-67 (301)
50 3te6_A Regulatory protein SIR3 76.2 0.92 3.2E-05 49.9 1.9 28 93-120 35-62 (318)
51 1ixz_A ATP-dependent metallopr 75.0 1 3.4E-05 46.5 1.7 51 70-121 12-67 (254)
52 4b4t_J 26S protease regulatory 71.7 1.7 5.9E-05 49.4 2.7 69 71-139 145-241 (405)
53 1qde_A EIF4A, translation init 71.7 1.7 6E-05 43.5 2.5 24 94-119 44-67 (224)
54 1vec_A ATP-dependent RNA helic 71.3 2 6.8E-05 42.4 2.8 25 94-120 33-57 (206)
55 2z4s_A Chromosomal replication 71.1 1.8 6.1E-05 49.3 2.7 52 67-122 98-149 (440)
56 3b9p_A CG5977-PA, isoform A; A 70.8 1 3.5E-05 47.4 0.6 51 70-120 17-71 (297)
57 2gxq_A Heat resistant RNA depe 70.4 2 6.7E-05 42.4 2.5 24 95-120 32-55 (207)
58 2kjq_A DNAA-related protein; s 70.1 2.2 7.5E-05 41.2 2.7 19 104-122 37-55 (149)
59 3d8b_A Fidgetin-like protein 1 69.7 1 3.4E-05 49.6 0.2 52 70-121 80-135 (357)
60 2chg_A Replication factor C sm 68.9 1.9 6.5E-05 41.9 2.0 22 100-121 35-56 (226)
61 1iy2_A ATP-dependent metallopr 67.1 0.77 2.6E-05 48.3 -1.3 51 70-121 36-91 (278)
62 3dkp_A Probable ATP-dependent 67.0 2.5 8.4E-05 43.1 2.5 24 94-119 59-82 (245)
63 4b4t_H 26S protease regulatory 67.0 1.4 4.7E-05 51.1 0.6 50 71-120 206-260 (467)
64 4b4t_L 26S protease subunit RP 66.7 1.3 4.6E-05 50.7 0.5 51 70-120 177-232 (437)
65 3bor_A Human initiation factor 66.7 1.6 5.6E-05 44.6 1.0 25 94-120 60-84 (237)
66 1p9r_A General secretion pathw 66.1 2.7 9.2E-05 47.8 2.8 29 93-121 157-185 (418)
67 2qp9_X Vacuolar protein sortin 64.9 3.4 0.00012 45.4 3.2 51 70-120 47-101 (355)
68 2pl3_A Probable ATP-dependent 64.7 2.9 0.0001 42.3 2.5 25 94-120 55-79 (236)
69 4b4t_I 26S protease regulatory 64.5 2.8 9.7E-05 48.1 2.6 70 70-139 178-275 (437)
70 1xwi_A SKD1 protein; VPS4B, AA 64.4 1.5 5.3E-05 47.5 0.4 51 71-121 9-63 (322)
71 1lv7_A FTSH; alpha/beta domain 64.4 1.2 4E-05 46.1 -0.5 51 70-121 8-63 (257)
72 2v1u_A Cell division control p 63.9 1.5 5.1E-05 47.2 0.1 22 100-121 41-62 (387)
73 3b6e_A Interferon-induced heli 63.0 1.8 6.1E-05 42.6 0.5 23 96-120 43-65 (216)
74 1t6n_A Probable ATP-dependent 62.9 3.3 0.00011 41.3 2.5 25 94-120 44-68 (220)
75 3jvv_A Twitching mobility prot 62.5 3 0.0001 46.4 2.2 28 94-121 114-141 (356)
76 1sxj_C Activator 1 40 kDa subu 62.4 3 0.0001 45.0 2.2 42 72-121 23-64 (340)
77 3iuy_A Probable ATP-dependent 62.4 3.4 0.00012 41.6 2.5 25 94-120 50-74 (228)
78 1fnn_A CDC6P, cell division co 61.5 4.5 0.00015 43.6 3.4 46 70-120 13-61 (389)
79 3syl_A Protein CBBX; photosynt 61.4 4.2 0.00014 42.7 3.1 20 101-120 65-84 (309)
80 3nmd_A CGMP dependent protein 61.2 10 0.00035 33.1 4.8 31 394-424 30-60 (72)
81 1wrb_A DJVLGB; RNA helicase, D 61.1 3.7 0.00013 42.1 2.5 25 94-120 53-77 (253)
82 3ly5_A ATP-dependent RNA helic 60.4 2.6 8.8E-05 44.1 1.2 25 93-119 83-107 (262)
83 3eie_A Vacuolar protein sortin 59.9 2.3 8E-05 45.8 0.8 52 70-121 14-69 (322)
84 3nmd_A CGMP dependent protein 59.5 25 0.00086 30.7 7.0 46 362-423 21-66 (72)
85 2c9o_A RUVB-like 1; hexameric 59.5 5.9 0.0002 45.0 4.0 47 70-121 33-81 (456)
86 2qz4_A Paraplegin; AAA+, SPG7, 59.4 6 0.00021 40.3 3.7 20 102-121 38-57 (262)
87 3i00_A HIP-I, huntingtin-inter 59.3 31 0.0011 32.8 8.3 66 359-429 14-79 (120)
88 3eiq_A Eukaryotic initiation f 59.1 4.3 0.00015 44.1 2.7 26 93-120 69-94 (414)
89 2oxc_A Probable ATP-dependent 58.6 4.4 0.00015 41.1 2.5 23 95-119 55-77 (230)
90 3vfd_A Spastin; ATPase, microt 58.4 2.2 7.5E-05 47.2 0.2 52 70-121 111-166 (389)
91 3llm_A ATP-dependent RNA helic 58.2 3.9 0.00013 41.8 2.0 27 92-120 67-93 (235)
92 3fmo_B ATP-dependent RNA helic 58.2 3.8 0.00013 43.9 2.1 26 94-119 122-147 (300)
93 2x8a_A Nuclear valosin-contain 57.9 1.1 3.8E-05 47.6 -2.2 51 70-120 6-61 (274)
94 3fe2_A Probable ATP-dependent 57.6 3.8 0.00013 41.9 1.9 24 95-120 60-83 (242)
95 3ber_A Probable ATP-dependent 57.5 4.6 0.00016 41.8 2.5 25 94-120 73-97 (249)
96 2jee_A YIIU; FTSZ, septum, coi 56.0 69 0.0024 28.6 9.3 58 362-428 22-79 (81)
97 3hu3_A Transitional endoplasmi 55.7 4.2 0.00014 47.1 2.0 50 71-120 201-255 (489)
98 2eyu_A Twitching motility prot 55.4 4.5 0.00015 42.8 2.0 21 101-121 23-43 (261)
99 1q0u_A Bstdead; DEAD protein, 55.1 3.3 0.00011 41.5 0.9 24 95-120 35-58 (219)
100 3sjb_C Golgi to ER traffic pro 54.9 54 0.0019 30.0 8.6 64 359-426 22-85 (93)
101 1sxj_D Activator 1 41 kDa subu 54.7 4.2 0.00014 43.4 1.7 42 72-121 35-76 (353)
102 1u0j_A DNA replication protein 54.6 5.6 0.00019 42.8 2.6 31 91-121 89-122 (267)
103 2qby_B CDC6 homolog 3, cell di 53.9 5 0.00017 43.3 2.1 47 69-120 15-62 (384)
104 3fmp_B ATP-dependent RNA helic 53.7 5.3 0.00018 45.0 2.3 27 93-119 121-147 (479)
105 2j0s_A ATP-dependent RNA helic 53.6 5.4 0.00018 43.5 2.3 25 94-120 67-91 (410)
106 3co5_A Putative two-component 52.5 6.4 0.00022 37.1 2.4 21 103-123 27-47 (143)
107 3fht_A ATP-dependent RNA helic 52.0 5.6 0.00019 43.1 2.1 28 93-120 54-81 (412)
108 3h1t_A Type I site-specific re 51.9 4.4 0.00015 47.1 1.4 30 91-121 187-216 (590)
109 1njg_A DNA polymerase III subu 51.6 5.6 0.00019 38.9 1.9 18 104-121 46-63 (250)
110 2zan_A Vacuolar protein sortin 51.4 2.8 9.7E-05 47.6 -0.4 52 70-121 130-185 (444)
111 1ofh_A ATP-dependent HSL prote 50.7 5.3 0.00018 41.7 1.6 19 103-121 50-68 (310)
112 2z0m_A 337AA long hypothetical 50.5 6.6 0.00022 41.1 2.3 24 95-120 25-48 (337)
113 2oap_1 GSPE-2, type II secreti 50.4 6.2 0.00021 46.0 2.3 22 98-121 257-278 (511)
114 3hnw_A Uncharacterized protein 50.2 84 0.0029 30.4 9.9 39 391-429 97-135 (138)
115 3pey_A ATP-dependent RNA helic 49.7 6.4 0.00022 42.2 2.1 27 94-120 35-61 (395)
116 1iqp_A RFCS; clamp loader, ext 49.1 6.5 0.00022 41.2 2.0 42 72-121 23-64 (327)
117 1gvn_B Zeta; postsegregational 49.0 12 0.00042 39.8 4.2 32 89-120 14-50 (287)
118 4fcw_A Chaperone protein CLPB; 49.0 5.4 0.00018 41.9 1.3 18 103-120 47-64 (311)
119 2fz4_A DNA repair protein RAD2 49.0 6.6 0.00023 40.5 2.0 24 96-121 103-126 (237)
120 3pfi_A Holliday junction ATP-d 48.9 8.2 0.00028 41.2 2.8 44 72-120 27-72 (338)
121 1s2m_A Putative ATP-dependent 48.9 6.5 0.00022 42.6 2.0 25 94-120 51-75 (400)
122 3n70_A Transport activator; si 48.5 5.1 0.00017 37.9 1.0 20 101-120 22-41 (145)
123 2qby_A CDC6 homolog 1, cell di 48.5 4 0.00014 43.7 0.3 20 101-120 43-62 (386)
124 1c4o_A DNA nucleotide excision 48.0 11 0.00037 45.2 3.9 73 71-149 2-88 (664)
125 2i4i_A ATP-dependent RNA helic 47.7 7.5 0.00026 42.3 2.3 24 95-120 46-69 (417)
126 1tue_A Replication protein E1; 47.5 5.6 0.00019 41.4 1.2 28 95-122 48-77 (212)
127 3pvs_A Replication-associated 47.2 7.2 0.00025 44.5 2.1 44 72-120 24-67 (447)
128 2ewv_A Twitching motility prot 46.9 5.7 0.0002 44.2 1.2 27 95-121 128-154 (372)
129 4b3f_X DNA-binding protein smu 46.9 5.4 0.00018 47.4 1.0 28 94-122 197-224 (646)
130 3sja_C Golgi to ER traffic pro 45.9 86 0.0029 26.9 7.9 50 360-413 6-55 (65)
131 1w5s_A Origin recognition comp 45.7 11 0.00037 41.0 3.2 26 96-121 40-70 (412)
132 1hqc_A RUVB; extended AAA-ATPa 45.4 9.9 0.00034 40.1 2.7 46 71-121 9-56 (324)
133 3cf2_A TER ATPase, transitiona 44.9 12 0.0004 46.2 3.5 51 70-120 200-255 (806)
134 1xti_A Probable ATP-dependent 43.6 9.5 0.00032 41.0 2.3 25 94-120 38-62 (391)
135 2chq_A Replication factor C sm 43.3 6.3 0.00021 41.2 0.8 22 100-121 35-56 (319)
136 3i5x_A ATP-dependent RNA helic 42.9 12 0.0004 43.1 3.0 27 93-119 101-127 (563)
137 3oiy_A Reverse gyrase helicase 42.8 9.5 0.00033 41.9 2.2 24 94-119 29-52 (414)
138 2db3_A ATP-dependent RNA helic 41.4 11 0.00039 42.1 2.5 25 94-120 86-110 (434)
139 2r44_A Uncharacterized protein 41.2 6.4 0.00022 42.1 0.5 25 95-121 40-64 (331)
140 2p5t_B PEZT; postsegregational 41.1 17 0.00058 37.6 3.6 32 89-120 13-49 (253)
141 3fho_A ATP-dependent RNA helic 40.4 10 0.00036 43.4 2.1 26 95-120 150-175 (508)
142 1rif_A DAR protein, DNA helica 40.2 7.1 0.00024 40.9 0.6 23 97-121 124-146 (282)
143 1sxj_E Activator 1 40 kDa subu 39.9 7.3 0.00025 41.7 0.7 16 106-121 39-54 (354)
144 4a2p_A RIG-I, retinoic acid in 39.9 12 0.00041 42.3 2.5 25 94-120 15-39 (556)
145 3u61_B DNA polymerase accessor 39.8 7.3 0.00025 41.4 0.6 19 103-121 48-66 (324)
146 2v1x_A ATP-dependent DNA helic 39.7 14 0.00049 43.5 3.2 26 93-120 51-76 (591)
147 1sxj_B Activator 1 37 kDa subu 39.6 11 0.00038 39.4 1.9 23 99-121 38-60 (323)
148 2ce7_A Cell division protein F 39.6 6.4 0.00022 45.5 0.1 46 70-120 12-66 (476)
149 1e9r_A Conjugal transfer prote 39.5 5.1 0.00017 44.8 -0.7 23 103-125 53-75 (437)
150 3c8u_A Fructokinase; YP_612366 39.4 15 0.00051 36.7 2.8 30 91-120 8-39 (208)
151 1nkp_B MAX protein, MYC proto- 38.9 1.4E+02 0.0046 26.1 8.6 66 363-430 15-80 (83)
152 4ayb_H DNA-directed RNA polyme 38.9 18 0.0006 32.5 2.8 44 870-932 21-64 (84)
153 1n0w_A DNA repair protein RAD5 38.8 12 0.0004 37.6 1.9 30 92-121 10-42 (243)
154 3pxg_A Negative regulator of g 38.6 10 0.00035 43.3 1.6 44 72-123 178-221 (468)
155 1nlw_A MAD protein, MAX dimeri 38.5 1.6E+02 0.0054 25.8 8.9 66 362-428 13-78 (80)
156 1fuu_A Yeast initiation factor 38.1 8 0.00027 41.5 0.6 25 94-120 51-75 (394)
157 2d7d_A Uvrabc system protein B 38.0 28 0.00096 41.6 5.3 79 70-153 4-96 (661)
158 2dhr_A FTSH; AAA+ protein, hex 38.0 5.2 0.00018 46.5 -0.9 46 70-120 27-81 (499)
159 3tbk_A RIG-I helicase domain; 37.9 14 0.00047 41.7 2.5 24 95-120 13-36 (555)
160 1hv8_A Putative ATP-dependent 37.7 11 0.00039 39.7 1.7 25 95-120 37-61 (367)
161 1w36_D RECD, exodeoxyribonucle 37.6 8.1 0.00028 45.8 0.6 22 103-124 164-185 (608)
162 1in4_A RUVB, holliday junction 37.5 8.3 0.00029 41.7 0.6 16 105-120 53-68 (334)
163 1qvr_A CLPB protein; coiled co 37.5 6.6 0.00023 48.3 -0.2 45 72-124 168-212 (854)
164 1rz3_A Hypothetical protein rb 37.2 17 0.00057 36.2 2.7 29 92-120 8-39 (201)
165 4gp7_A Metallophosphoesterase; 36.6 9.5 0.00032 37.1 0.8 17 105-121 11-27 (171)
166 2v66_B Nuclear distribution pr 36.2 62 0.0021 30.5 6.2 30 396-425 34-63 (111)
167 3b85_A Phosphate starvation-in 36.1 15 0.00052 37.4 2.3 26 93-120 14-39 (208)
168 3a7p_A Autophagy protein 16; c 35.5 1.9E+02 0.0065 28.6 9.7 57 360-425 68-124 (152)
169 3sqw_A ATP-dependent RNA helic 35.3 18 0.00061 42.0 3.0 26 94-119 51-76 (579)
170 3hnw_A Uncharacterized protein 35.2 1E+02 0.0034 29.9 7.7 53 361-422 83-135 (138)
171 2fwr_A DNA repair protein RAD2 35.1 14 0.0005 41.2 2.1 23 96-120 103-125 (472)
172 2w0m_A SSO2452; RECA, SSPF, un 34.7 14 0.00048 36.4 1.7 29 93-121 10-41 (235)
173 4gl2_A Interferon-induced heli 34.3 15 0.00052 43.3 2.2 25 94-120 15-39 (699)
174 3lw7_A Adenylate kinase relate 34.3 12 0.00042 34.9 1.2 16 105-120 3-18 (179)
175 2yy0_A C-MYC-binding protein; 34.1 68 0.0023 26.3 5.4 30 399-428 21-50 (53)
176 2cvh_A DNA repair and recombin 33.9 16 0.00054 36.0 1.9 29 93-121 7-38 (220)
177 4a74_A DNA repair and recombin 33.8 18 0.00062 35.8 2.4 28 93-120 12-42 (231)
178 2qag_C Septin-7; cell cycle, c 33.7 12 0.0004 42.6 1.0 23 98-120 26-48 (418)
179 1ojl_A Transcriptional regulat 33.7 15 0.00052 39.3 1.9 20 101-120 23-42 (304)
180 2gk6_A Regulator of nonsense t 33.7 10 0.00036 44.9 0.6 27 95-123 189-215 (624)
181 2gza_A Type IV secretion syste 33.5 16 0.00053 40.4 2.0 22 97-120 171-192 (361)
182 3tr0_A Guanylate kinase, GMP k 33.1 12 0.0004 36.7 0.8 16 105-120 9-24 (205)
183 1jr3_A DNA polymerase III subu 33.1 22 0.00074 38.1 3.0 18 103-120 38-55 (373)
184 1um8_A ATP-dependent CLP prote 33.0 11 0.00039 41.1 0.8 18 103-120 72-89 (376)
185 2jlq_A Serine protease subunit 32.4 14 0.00048 41.8 1.4 24 95-119 12-35 (451)
186 3b9q_A Chloroplast SRP recepto 32.3 21 0.00071 38.6 2.7 17 104-120 101-117 (302)
187 4emc_A Monopolin complex subun 32.2 1.3E+02 0.0045 30.7 8.3 46 359-420 19-64 (190)
188 3hws_A ATP-dependent CLP prote 32.0 12 0.00042 40.7 0.8 18 103-120 51-68 (363)
189 1wp9_A ATP-dependent RNA helic 31.9 16 0.00054 39.7 1.7 25 94-121 17-41 (494)
190 2qnr_A Septin-2, protein NEDD5 31.8 12 0.00042 40.1 0.8 24 97-120 12-35 (301)
191 1kgd_A CASK, peripheral plasma 31.4 13 0.00045 36.3 0.8 16 105-120 7-22 (180)
192 3upu_A ATP-dependent DNA helic 31.4 21 0.00072 40.4 2.7 37 80-121 27-63 (459)
193 3vlc_E Golgi to ER traffic pro 31.3 48 0.0017 30.3 4.4 56 360-419 30-85 (94)
194 2ykg_A Probable ATP-dependent 31.2 22 0.00074 41.9 2.8 22 96-119 23-44 (696)
195 3tau_A Guanylate kinase, GMP k 31.1 14 0.00049 36.9 1.1 17 104-120 9-25 (208)
196 3e70_C DPA, signal recognition 30.7 27 0.00093 38.2 3.3 18 103-120 129-146 (328)
197 2b8t_A Thymidine kinase; deoxy 30.5 10 0.00035 39.4 -0.1 21 103-123 12-32 (223)
198 3pxi_A Negative regulator of g 29.8 27 0.00092 42.1 3.4 17 104-120 522-538 (758)
199 3iv1_A Tumor susceptibility ge 29.5 77 0.0026 28.1 5.3 33 394-426 43-75 (78)
200 4ag6_A VIRB4 ATPase, type IV s 29.5 12 0.00042 41.2 0.3 21 100-122 34-54 (392)
201 1zp6_A Hypothetical protein AT 29.4 15 0.00053 35.4 1.0 17 104-120 10-26 (191)
202 1r6b_X CLPA protein; AAA+, N-t 29.2 32 0.0011 41.4 3.9 17 104-120 489-505 (758)
203 1ly1_A Polynucleotide kinase; 29.0 17 0.00058 34.5 1.2 16 104-119 3-18 (181)
204 3sop_A Neuronal-specific septi 29.0 15 0.00052 38.9 0.9 19 102-120 1-19 (270)
205 3a00_A Guanylate kinase, GMP k 28.8 13 0.00045 36.4 0.4 15 106-120 4-18 (186)
206 3nbx_X ATPase RAVA; AAA+ ATPas 28.5 22 0.00075 41.3 2.1 28 93-122 33-60 (500)
207 2orw_A Thymidine kinase; TMTK, 28.4 10 0.00036 37.7 -0.5 19 105-123 5-23 (184)
208 1lvg_A Guanylate kinase, GMP k 28.3 15 0.0005 36.7 0.6 16 105-120 6-21 (198)
209 3trf_A Shikimate kinase, SK; a 28.1 18 0.00062 34.8 1.2 16 105-120 7-22 (185)
210 3cf2_A TER ATPase, transitiona 28.1 22 0.00077 43.7 2.2 35 105-139 513-570 (806)
211 3pxi_A Negative regulator of g 28.0 29 0.001 41.8 3.3 43 72-122 178-220 (758)
212 3he5_A Synzip1; heterodimeric 27.9 1.9E+02 0.0063 22.6 6.4 16 361-376 4-19 (49)
213 1sxj_A Activator 1 95 kDa subu 27.8 24 0.00082 40.6 2.3 19 103-121 77-95 (516)
214 1qvr_A CLPB protein; coiled co 27.8 30 0.001 42.5 3.3 17 104-120 589-605 (854)
215 3mq9_A Bone marrow stromal ant 27.8 63 0.0021 36.5 5.7 14 363-376 400-413 (471)
216 2dr3_A UPF0273 protein PH0284; 27.7 21 0.0007 35.8 1.6 26 95-120 12-40 (247)
217 1qhx_A CPT, protein (chloramph 27.6 19 0.00064 34.4 1.2 17 104-120 4-20 (178)
218 1ye8_A Protein THEP1, hypothet 27.5 16 0.00053 36.2 0.6 15 106-120 3-17 (178)
219 1r6b_X CLPA protein; AAA+, N-t 27.4 25 0.00085 42.3 2.4 45 72-124 184-228 (758)
220 1nkp_A C-MYC, MYC proto-oncoge 27.3 2.4E+02 0.0081 25.1 8.3 66 363-429 19-84 (88)
221 2j41_A Guanylate kinase; GMP, 27.3 17 0.00058 35.5 0.8 16 105-120 8-23 (207)
222 1ypw_A Transitional endoplasmi 27.1 21 0.00072 43.8 1.8 52 69-120 199-255 (806)
223 2ehv_A Hypothetical protein PH 26.9 17 0.00059 36.4 0.8 17 105-121 32-48 (251)
224 4a4z_A Antiviral helicase SKI2 26.9 27 0.00091 44.0 2.7 23 95-119 48-70 (997)
225 1rj9_A FTSY, signal recognitio 26.9 18 0.00062 39.1 1.0 17 104-120 103-119 (304)
226 2wjy_A Regulator of nonsense t 26.8 15 0.00053 45.0 0.5 27 95-123 365-391 (800)
227 3lnc_A Guanylate kinase, GMP k 26.7 20 0.00069 36.2 1.3 16 105-120 29-44 (231)
228 2r8r_A Sensor protein; KDPD, P 26.6 16 0.00056 38.3 0.6 19 104-122 7-25 (228)
229 2og2_A Putative signal recogni 26.6 30 0.001 38.4 2.8 17 104-120 158-174 (359)
230 3s4r_A Vimentin; alpha-helix, 26.5 77 0.0026 28.7 5.0 61 360-424 23-83 (93)
231 2xzl_A ATP-dependent helicase 26.4 17 0.00058 44.7 0.8 19 105-123 377-395 (802)
232 2bdt_A BH3686; alpha-beta prot 26.4 18 0.00062 35.1 0.8 16 105-120 4-19 (189)
233 3iij_A Coilin-interacting nucl 25.8 20 0.00067 34.6 1.0 16 105-120 13-28 (180)
234 1oyw_A RECQ helicase, ATP-depe 25.7 18 0.00061 41.9 0.7 25 94-120 33-57 (523)
235 1znw_A Guanylate kinase, GMP k 25.6 19 0.00065 35.9 0.8 21 98-120 17-37 (207)
236 2lw1_A ABC transporter ATP-bin 25.6 2.6E+02 0.0089 24.7 8.2 56 360-425 29-84 (89)
237 4a2q_A RIG-I, retinoic acid in 25.3 29 0.00098 42.1 2.5 25 94-120 256-280 (797)
238 1xx6_A Thymidine kinase; NESG, 25.3 12 0.00039 38.0 -0.8 19 105-123 10-28 (191)
239 3oja_B Anopheles plasmodium-re 25.0 1.5E+02 0.0053 34.1 8.5 37 399-435 553-589 (597)
240 1odf_A YGR205W, hypothetical 3 24.9 35 0.0012 36.6 2.8 37 84-120 10-48 (290)
241 3uie_A Adenylyl-sulfate kinase 24.8 28 0.00095 34.4 1.9 20 101-120 23-42 (200)
242 3lfu_A DNA helicase II; SF1 he 24.6 20 0.00068 41.9 0.9 20 102-121 21-40 (647)
243 3mq7_A Bone marrow stromal ant 24.6 2.2E+02 0.0077 27.0 7.7 27 399-425 73-99 (121)
244 1l8d_A DNA double-strand break 24.6 3.1E+02 0.011 24.7 8.9 39 390-428 64-102 (112)
245 3tif_A Uncharacterized ABC tra 24.4 23 0.0008 36.6 1.3 21 105-125 33-56 (235)
246 3na7_A HP0958; flagellar bioge 24.4 2.3E+02 0.0078 29.6 8.9 22 398-419 105-126 (256)
247 4a2w_A RIG-I, retinoic acid in 24.1 29 0.001 43.1 2.3 24 95-120 257-280 (936)
248 3mq7_A Bone marrow stromal ant 23.9 1.1E+02 0.0036 29.1 5.4 34 394-427 75-108 (121)
249 1gm5_A RECG; helicase, replica 23.8 27 0.00092 42.8 1.8 27 94-120 380-406 (780)
250 2v6i_A RNA helicase; membrane, 23.6 28 0.00097 39.0 1.9 16 105-120 4-19 (431)
251 1kht_A Adenylate kinase; phosp 23.6 23 0.00077 34.0 0.9 16 105-120 5-20 (192)
252 2px0_A Flagellar biosynthesis 23.5 21 0.0007 38.4 0.7 17 105-121 107-123 (296)
253 3vaa_A Shikimate kinase, SK; s 23.5 24 0.00083 34.8 1.2 16 105-120 27-42 (199)
254 2pt7_A CAG-ALFA; ATPase, prote 23.5 18 0.00062 39.5 0.2 22 97-120 167-188 (330)
255 1kag_A SKI, shikimate kinase I 23.3 23 0.00079 33.6 0.9 16 105-120 6-21 (173)
256 1lkx_A Myosin IE heavy chain; 23.2 38 0.0013 41.0 3.0 21 100-120 91-111 (697)
257 3kb2_A SPBC2 prophage-derived 23.2 26 0.00088 32.9 1.2 16 105-120 3-18 (173)
258 2ze6_A Isopentenyl transferase 22.9 25 0.00086 36.5 1.2 15 105-119 3-17 (253)
259 2dgc_A Protein (GCN4); basic d 22.8 1.2E+02 0.0041 25.5 5.1 34 395-428 28-61 (63)
260 1t2k_D Cyclic-AMP-dependent tr 22.8 2E+02 0.0069 23.6 6.5 31 397-427 29-59 (61)
261 2qen_A Walker-type ATPase; unk 22.7 29 0.001 36.4 1.7 17 104-120 32-48 (350)
262 3e1s_A Exodeoxyribonuclease V, 22.7 30 0.001 40.7 1.9 27 95-123 198-224 (574)
263 1z6g_A Guanylate kinase; struc 22.6 20 0.0007 36.2 0.4 15 106-120 26-40 (218)
264 3kta_A Chromosome segregation 22.6 22 0.00076 34.2 0.6 16 105-120 28-43 (182)
265 2oca_A DAR protein, ATP-depend 22.5 24 0.00082 39.9 1.0 21 98-120 125-145 (510)
266 2dfs_A Myosin-5A; myosin-V, in 22.4 1.6E+02 0.0056 37.4 8.5 21 100-120 153-173 (1080)
267 2i3b_A HCR-ntpase, human cance 22.2 22 0.00077 35.6 0.6 16 105-120 3-18 (189)
268 1knq_A Gluconate kinase; ALFA/ 22.0 25 0.00084 33.6 0.8 17 104-120 9-25 (175)
269 1yke_B RNA polymerase II holoe 22.0 4.6E+02 0.016 25.7 9.9 64 366-431 70-133 (151)
270 2yhs_A FTSY, cell division pro 21.9 35 0.0012 39.8 2.2 17 104-120 294-310 (503)
271 1lwu_C Fibrinogen gamma chain; 21.8 2.3E+02 0.0077 31.2 8.5 51 362-428 7-57 (323)
272 3t5d_A Septin-7; GTP-binding p 21.7 25 0.00084 36.8 0.8 22 99-120 4-25 (274)
273 1jr5_A 10 kDa anti-sigma facto 21.7 61 0.0021 29.3 3.2 33 865-897 54-86 (90)
274 1w9i_A Myosin II heavy chain; 21.7 43 0.0015 41.1 3.0 21 100-120 169-189 (770)
275 3kl4_A SRP54, signal recogniti 21.7 59 0.002 37.1 4.0 20 103-122 97-116 (433)
276 1ci6_A Transcription factor AT 21.6 2.2E+02 0.0075 23.8 6.5 31 397-427 30-60 (63)
277 1uf9_A TT1252 protein; P-loop, 21.5 32 0.0011 33.3 1.6 21 100-120 5-25 (203)
278 2pms_C Pneumococcal surface pr 21.5 4.4E+02 0.015 25.2 9.2 69 359-432 12-89 (125)
279 2v26_A Myosin VI; calmodulin-b 21.4 43 0.0015 41.1 3.0 21 100-120 137-157 (784)
280 1j8m_F SRP54, signal recogniti 21.3 59 0.002 34.9 3.7 17 105-121 100-116 (297)
281 2wt7_A Proto-oncogene protein 21.2 2.4E+02 0.0082 23.5 6.7 33 395-427 28-60 (63)
282 1tev_A UMP-CMP kinase; ploop, 21.1 29 0.001 33.2 1.2 17 104-120 4-20 (196)
283 1yks_A Genome polyprotein [con 21.1 32 0.0011 38.8 1.6 21 98-120 5-25 (440)
284 1gku_B Reverse gyrase, TOP-RG; 21.0 39 0.0013 42.7 2.6 23 94-118 64-86 (1054)
285 3sr0_A Adenylate kinase; phosp 21.0 30 0.001 35.2 1.2 29 106-134 3-37 (206)
286 2z83_A Helicase/nucleoside tri 21.0 33 0.0011 38.8 1.7 15 105-119 23-37 (459)
287 1f2t_A RAD50 ABC-ATPase; DNA d 20.9 30 0.001 33.1 1.2 16 105-120 25-40 (149)
288 3crv_A XPD/RAD3 related DNA he 20.8 37 0.0013 39.3 2.2 28 91-120 12-39 (551)
289 2wq1_A General control protein 20.7 1.9E+02 0.0066 21.6 5.0 30 400-429 3-32 (33)
290 3cm0_A Adenylate kinase; ATP-b 20.7 30 0.001 33.2 1.2 16 105-120 6-21 (186)
291 1gk4_A Vimentin; intermediate 20.7 3.4E+02 0.012 23.8 7.9 33 392-424 28-60 (84)
292 2zj8_A DNA helicase, putative 20.6 24 0.00081 42.2 0.5 20 99-120 37-56 (720)
293 2rhm_A Putative kinase; P-loop 20.5 27 0.00093 33.6 0.8 17 104-120 6-22 (193)
294 1i84_S Smooth muscle myosin he 20.5 45 0.0016 42.7 3.0 21 100-120 166-186 (1184)
295 2qor_A Guanylate kinase; phosp 20.4 29 0.00097 34.4 0.9 16 105-120 14-29 (204)
296 2pcj_A ABC transporter, lipopr 20.3 30 0.001 35.4 1.1 20 106-125 33-55 (224)
297 2fna_A Conserved hypothetical 20.2 33 0.0011 36.0 1.4 18 104-121 31-48 (357)
298 1g8x_A Myosin II heavy chain f 20.2 45 0.0015 42.1 2.8 21 100-120 169-189 (1010)
299 2p6r_A Afuhel308 helicase; pro 20.1 27 0.00091 41.7 0.7 30 81-120 28-57 (702)
300 3a7o_A Autophagy protein 16; c 20.1 1.3E+02 0.0043 26.2 4.6 27 399-425 48-74 (75)
301 3azd_A Short alpha-tropomyosin 20.0 33 0.0011 26.2 1.0 31 398-428 5-35 (37)
No 1
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=4.6e-86 Score=739.11 Aligned_cols=341 Identities=38% Similarity=0.518 Sum_probs=291.0
Q ss_pred CCCCCceEEEEecCCCCchhhhcCCCcceEEeC---CcEEEeccCCCCCCCCCceeecceeeCCCCChHHHHhhcHHHHH
Q 002140 19 SAREEKILVLVRLRPLSEKEITADEATDWECIN---DTTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIA 95 (960)
Q Consensus 19 ~~~~~~I~V~VRVRPl~~~E~~~~~~~~~~~~~---~~ti~~~~~~~~~s~~~~~F~FD~VF~~~atQeeVye~~v~plV 95 (960)
.+..++|+|+|||||+++.|...+....+.+.+ ..++.+. .+.|+||+||+++++|++||+.+++|+|
T Consensus 7 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~i~~~---------~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv 77 (365)
T 2y65_A 7 IPAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIA---------GKVYLFDKVFKPNASQEKVYNEAAKSIV 77 (365)
T ss_dssp -CCEEECEEEEEECCCCHHHHHTTCCBCEECCSSSTTCEEEET---------TEEEECSEEECTTCCHHHHHHHHTHHHH
T ss_pred CCCCCCeEEEEEcCcCChhHhccCCceEEEeCCCCCCcEEEEC---------CEEEeCceEecCCCCHHHHHHHhhhhHH
Confidence 356789999999999999998877766666554 2344431 3589999999999999999999999999
Q ss_pred HHHhCCCCEEEEEeccCCCCCccccC---------CCchhhHHHHHHHHHhc-cccceEEEeeeeeeecchhccccCCCC
Q 002140 96 LSVVSGINSSIFAYGQTSSGKTYTMT---------GITECTVADIFDYIHRH-EERAFVLKFSAMEIYNEAIRDLLSTDN 165 (960)
Q Consensus 96 ~svL~G~N~tIfAYGqTGSGKTyTM~---------GIi~ral~dLF~~I~~~-~~~~f~V~vS~lEIYNE~V~DLL~~~~ 165 (960)
+++++|||+||||||||||||||||. ||+|+++++||+.+... .+..|.|++||+|||||+|+|||++..
T Consensus 78 ~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~ 157 (365)
T 2y65_A 78 TDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSK 157 (365)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEEEETTEEEETTCTTC
T ss_pred HHHhCCCceEEEeecCCCCCCceEEecCCCCcccCChHHHHHHHHHHHHHhccCCceEEEEEEEEEEECCeeeecccCCc
Confidence 99999999999999999999999995 68999999999999764 356899999999999999999999988
Q ss_pred CCceeeeCCCCCEEeccceEEEeCCHHHHHHHHHHHHhhhcccccccCCCCCCceeEEEEEEEeccccccCCCCceeEEE
Q 002140 166 TPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSA 245 (960)
Q Consensus 166 ~~L~I~ed~~~gv~V~gLte~~V~S~ee~~~LL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~e~~~~~~~~~~~S 245 (960)
.++.+++++.++++|.||+++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|++... .......|
T Consensus 158 ~~l~i~e~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~-----~~~~~~~s 232 (365)
T 2y65_A 158 VNLSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENL-----ENQKKLSG 232 (365)
T ss_dssp CSBCEEECSSSCEEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEET-----TTCCEEEE
T ss_pred CCceEEECCCCCEEecCCEEEecCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEec-----CCCCEeEE
Confidence 8999999999999999999999999999999999999999999999999999999999999987543 23345789
Q ss_pred EEEEEEcCCCcccccccccccccccccccccchHHHHHHHHHHhcCCCCcccCCCCcccccccCCCCCCcccceEecCCC
Q 002140 246 SVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSP 325 (960)
Q Consensus 246 kL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mI~tISP 325 (960)
+|+|||||||||..++++.|.|++|+.+||+||++||+||.+|+.++..||||||||||+||||+|||||+|+|||||||
T Consensus 233 kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP 312 (365)
T 2y65_A 233 KLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSP 312 (365)
T ss_dssp EEEEEECCCCCC----------------CCHHHHHHHHHHHHHHHCCCSCCCGGGCHHHHHTGGGTTSSSEEEEEEEECC
T ss_pred EEEEEECCCCCcchhcCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCHHHHHHHhhcCCCccEEEEEEecC
Confidence 99999999999999999999999999999999999999999999887789999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHHhhcccccceeccccCHHHHHHHHHHHHHHHH
Q 002140 326 ARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKELARLE 373 (960)
Q Consensus 326 s~~~~eETlsTLrFAsrAK~Ikn~~~vN~~~s~~~lik~Lq~Ei~~Le 373 (960)
+..+++||++||+||+|||.|+|+|.+|+.++.+.++++|++|+.+|+
T Consensus 313 ~~~~~~ETl~TL~fA~rak~I~n~~~~n~~~~~~~~~~~~~~e~~~~~ 360 (365)
T 2y65_A 313 ASFNESETKSTLDFGRRAKTVKNVVCVNEELTAEEWKRRYEKEKEKNA 360 (365)
T ss_dssp BGGGHHHHHHHHHHHHHHTTCEEECCCEEECCSHHHHHC---------
T ss_pred ccCCHHHHHHHHHHHHHHhcccCcceeCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999889998988887765
No 2
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=1.1e-85 Score=737.05 Aligned_cols=344 Identities=38% Similarity=0.575 Sum_probs=289.9
Q ss_pred CCCCceEEEEecCCCCchhhhcCCCcceEEeC-CcEEEeccCCCCCCCCCceeecceeeCCCCChHHHHhhcHHHHHHHH
Q 002140 20 AREEKILVLVRLRPLSEKEITADEATDWECIN-DTTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSV 98 (960)
Q Consensus 20 ~~~~~I~V~VRVRPl~~~E~~~~~~~~~~~~~-~~ti~~~~~~~~~s~~~~~F~FD~VF~~~atQeeVye~~v~plV~sv 98 (960)
...++|+|+|||||+++.|...+....+.+.. ..++.+.++.......++.|+||+||+++++|++||+.+++|+|+++
T Consensus 18 ~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~ 97 (372)
T 3b6u_A 18 GSSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQFELYDETFRPLVDSV 97 (372)
T ss_dssp ---CBCEEEEEECCCCHHHHHTTCCBCEEEETTTTEEEECCTTCTTTCCCEEEECSEEECTTCCHHHHHHHTHHHHHHHH
T ss_pred CCCCCeEEEEEcCCCChhhhccCCceEEEEeCCCCEEEEECCCCCCCCCceEEEcCeEeCCcCchHHHHHHHHHHHHHHH
Confidence 45689999999999999998887777776654 45666655433233456799999999999999999999999999999
Q ss_pred hCCCCEEEEEeccCCCCCccccC---------CCchhhHHHHHHHHHhccccceEEEeeeeeeecchhccccCCCC-CCc
Q 002140 99 VSGINSSIFAYGQTSSGKTYTMT---------GITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTDN-TPL 168 (960)
Q Consensus 99 L~G~N~tIfAYGqTGSGKTyTM~---------GIi~ral~dLF~~I~~~~~~~f~V~vS~lEIYNE~V~DLL~~~~-~~L 168 (960)
++|||+||||||||||||||||+ ||+|+++++||..+....+..|.|++||+|||||+|+|||++.. ..+
T Consensus 98 l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~l 177 (372)
T 3b6u_A 98 LQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQTKRL 177 (372)
T ss_dssp HTTCCEEEEEEESTTSSHHHHHTBCTTSGGGBCHHHHHHHHHHHHHHTCSSCEEEEEEEEEEEETTEEEETTSSCTTCCB
T ss_pred hCCCeeeEEeecCCCCCCCEeEecCCCCcccCCcHHHHHHHHHHHhhhccCCceEEEEEEEEEeCCEEEECCCCCCCCCc
Confidence 99999999999999999999995 58999999999999988888999999999999999999998764 579
Q ss_pred eeeeCCCCCEEeccceEEEeCCHHHHHHHHHHHHhhhcccccccCCCCCCceeEEEEEEEeccccccCCCCceeEEEEEE
Q 002140 169 RLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVN 248 (960)
Q Consensus 169 ~I~ed~~~gv~V~gLte~~V~S~ee~~~LL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~e~~~~~~~~~~~SkL~ 248 (960)
.+++++.+|++|.||+++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|++..... .+......|+|+
T Consensus 178 ~i~e~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~--~~~~~~~~skL~ 255 (372)
T 3b6u_A 178 ELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGL--DGENHIRVGKLN 255 (372)
T ss_dssp CEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEEEEC-------CCCEEEEEEE
T ss_pred eEEECCCCcEecCCCEEEEecCHHHHHHHHHHHHHhcCcccccCCCCCCcceEEEEEEEEEeecCC--CCCcceEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999998754321 123345789999
Q ss_pred EEEcCCCcccccccccccccccccccccchHHHHHHHHHHhcCCCCcccCCCCcccccccCCCCCCcccceEecCCCCcc
Q 002140 249 FVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARS 328 (960)
Q Consensus 249 fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mI~tISPs~~ 328 (960)
|||||||||..++++.|.|++|+.+||+||++||+||.+|++++..||||||||||+||||+|||||+|+|||||||+..
T Consensus 256 lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~~ 335 (372)
T 3b6u_A 256 LVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASY 335 (372)
T ss_dssp EEECCCCCE----------EEEGGGCCHHHHHHHHHHHHHHCC---CCCGGGSHHHHHTTTTTTSSSEEEEEEEECCBGG
T ss_pred EEECCCCccccccCcchhhhhhHhhhhhhHHHHHHHHHHHhcCCCCCCcccccHHHHHHHHhcCCCccEEEEEEeCCccc
Confidence 99999999999999999999999999999999999999999887789999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhcccccceeccccCHHHHHHHHH
Q 002140 329 HVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQ 366 (960)
Q Consensus 329 ~~eETlsTLrFAsrAK~Ikn~~~vN~~~s~~~lik~Lq 366 (960)
+++||++||+||+|||+|+|+|++|+.+.+ +++++||
T Consensus 336 ~~~ETlsTLrfA~rak~I~n~~~~n~~~~~-~~~~~~~ 372 (372)
T 3b6u_A 336 NVEETLTTLRYANRAKNIKNKPRVNEDPKD-ALLREFQ 372 (372)
T ss_dssp GHHHHHHHHHHHHHHTTCBCCCCCCC------------
T ss_pred CHHHHHHHHHHHHHHhhccccceecCChHH-HHHHhcC
Confidence 999999999999999999999999998654 5666553
No 3
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=3.8e-85 Score=729.57 Aligned_cols=330 Identities=35% Similarity=0.520 Sum_probs=305.9
Q ss_pred CCCCceEEEEecCCCCchhhhcCCCcceEEeCCcEEEeccCCCCCCCCCceeecceeeCCCCChHHHHhhcHHHHHHHHh
Q 002140 20 AREEKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVV 99 (960)
Q Consensus 20 ~~~~~I~V~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~~~~s~~~~~F~FD~VF~~~atQeeVye~~v~plV~svL 99 (960)
...++|+|+|||||+++.|...+....+.+.++.++.+... ...+.|+||+||+++++|++||+.+++|+|++++
T Consensus 3 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~-----~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l 77 (355)
T 1goj_A 3 SSANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSK-----EAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDIL 77 (355)
T ss_dssp CSSCBCEEEEEECCCCHHHHTTTCCBCEEECSTTEEEECST-----TCCEEEECSEEECTTCCHHHHHHHHTHHHHHHHT
T ss_pred CCCCCeEEEEECCCCChHHhhcCCceEEEEcCCCeEEEccC-----CCccEEeeCeEECCCCccHHHHHHHHHHHHHHHh
Confidence 44679999999999999999888888888877777665332 2357899999999999999999999999999999
Q ss_pred CCCCEEEEEeccCCCCCccccC----------CCchhhHHHHHHHHHhcc-ccceEEEeeeeeeecchhccccCCCCCCc
Q 002140 100 SGINSSIFAYGQTSSGKTYTMT----------GITECTVADIFDYIHRHE-ERAFVLKFSAMEIYNEAIRDLLSTDNTPL 168 (960)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM~----------GIi~ral~dLF~~I~~~~-~~~f~V~vS~lEIYNE~V~DLL~~~~~~L 168 (960)
+|||+||||||||||||||||+ ||+|+++++||+.+.... ...|.|++||+|||||+|+|||++....+
T Consensus 78 ~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~l 157 (355)
T 1goj_A 78 NGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNL 157 (355)
T ss_dssp TTCCEEEEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSTTCCSC
T ss_pred CCCcceEEEECCCCCCcceEeecCCCCCcccCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEECCEEEEcccCccCCc
Confidence 9999999999999999999996 489999999999998654 56899999999999999999999988899
Q ss_pred eeeeCCCCCEEeccceEEEeCCHHHHHHHHHHHHhhhcccccccCCCCCCceeEEEEEEEeccccccCCCCceeEEEEEE
Q 002140 169 RLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVN 248 (960)
Q Consensus 169 ~I~ed~~~gv~V~gLte~~V~S~ee~~~LL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~e~~~~~~~~~~~SkL~ 248 (960)
.+++++.+|++|.||+++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|++... .......|+|+
T Consensus 158 ~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~-----~~~~~~~skL~ 232 (355)
T 1goj_A 158 PVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNV-----ETGSAKSGQLF 232 (355)
T ss_dssp CEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEET-----TTTEEEEEEEE
T ss_pred eeEEcCCCCEeecCCEEEeCCCHHHHHHHHHHHHhhcCcccccCCCCCCCceEEEEEEEEEecc-----CCCceeeeEEE
Confidence 9999999999999999999999999999999999999999999999999999999999987543 23346789999
Q ss_pred EEEcCCCcccccccccccccccccccccchHHHHHHHHHHhcCCCCcccCCCCcccccccCCCCCCcccceEecCCCCcc
Q 002140 249 FVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARS 328 (960)
Q Consensus 249 fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mI~tISPs~~ 328 (960)
|||||||||..++++.|.+++|+.+||+||++||+||.+|+.++..|||||||||||||||+||||++|+|||||||+..
T Consensus 233 lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGns~t~mI~~isP~~~ 312 (355)
T 1goj_A 233 LVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSY 312 (355)
T ss_dssp EEECCCCSCCTTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHHCSCSCCCGGGCHHHHHTGGGTTSSCEEEEEEEECCBGG
T ss_pred EEECCCCCcccccccchhhHHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCccCHHHHHHHHHhCCCCcEEEEEEECcccc
Confidence 99999999999999999999999999999999999999999987789999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhcccccceeccccCHH
Q 002140 329 HVEQTRNTLLFACCAKEVTTKAQVNVVMSDK 359 (960)
Q Consensus 329 ~~eETlsTLrFAsrAK~Ikn~~~vN~~~s~~ 359 (960)
+++||++||+||+|||+|+|+|++|+.++..
T Consensus 313 ~~~ETl~TL~fA~rak~I~n~~~vn~~~~~~ 343 (355)
T 1goj_A 313 NDAETLSTLRFGMRAKSIKNKAKVNAELSPA 343 (355)
T ss_dssp GHHHHHHHHHHHHHHHTCBCCCCCCSSSSCS
T ss_pred cHHHHHHHHHHHHHHhhccCCceeCCCCCHH
Confidence 9999999999999999999999999987764
No 4
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.1e-85 Score=735.16 Aligned_cols=337 Identities=28% Similarity=0.444 Sum_probs=251.2
Q ss_pred CCCCCCceEEEEecCCCCchhhhcCCCcceEEeCCcEEEeccCCCCCCCCCceeecceeeCCCCChHHHHhhcHHHHHHH
Q 002140 18 PSAREEKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALS 97 (960)
Q Consensus 18 ~~~~~~~I~V~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~~~~s~~~~~F~FD~VF~~~atQeeVye~~v~plV~s 97 (960)
..+..++|+|+|||||+++.|...+....+...++.++.+.+.. .......|+||+||+++++|++||+.+++|+|++
T Consensus 16 ~~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~i~~~~--~~~~~~~f~FD~Vf~~~~tQ~~Vy~~~~~plv~~ 93 (388)
T 3bfn_A 16 FQGPPARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWR--NHQETLKYQFDAFYGERSTQQDIYAGSVQPILRH 93 (388)
T ss_dssp SSSCCCCCEEEEEECCCC-------------------------------CEEEEECSEEECTTCCHHHHHHHHTGGGHHH
T ss_pred ccCCCCCEEEEEECCCCChhhhccCCCceEEecCCCeEEEecCC--CCCCeeEEEcceEecCCCCHhHHHHHHHHHHHHH
Confidence 34667899999999999999976655544544555555543321 1123468999999999999999999999999999
Q ss_pred HhCCCCEEEEEeccCCCCCccccC------CCchhhHHHHHHHHHhc----cccceEEEeeeeeeecchhccccCCCCCC
Q 002140 98 VVSGINSSIFAYGQTSSGKTYTMT------GITECTVADIFDYIHRH----EERAFVLKFSAMEIYNEAIRDLLSTDNTP 167 (960)
Q Consensus 98 vL~G~N~tIfAYGqTGSGKTyTM~------GIi~ral~dLF~~I~~~----~~~~f~V~vS~lEIYNE~V~DLL~~~~~~ 167 (960)
+++|||+||||||||||||||||+ ||+|+++.+||+.+... ....|.|++||+|||||+|+|||++...+
T Consensus 94 ~l~G~N~tifAYGqTGSGKTyTM~G~~~~~Giipra~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~ 173 (388)
T 3bfn_A 94 LLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGD 173 (388)
T ss_dssp HTTTCCEEEEEESCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHTSTTCSEEEEEEEEEEEEETTEEEESSSCSSCB
T ss_pred hhcCceeeEeeecCCCCCCCeEeecCccccchhHHHHHHHHHHHHHhhccCCCceEEEEEEEEEEECCeeeehhccCCCC
Confidence 999999999999999999999996 59999999999999763 34579999999999999999999998889
Q ss_pred ceeeeCCCCCEEeccceEEEeCCHHHHHHHHHHHHhhhcccccccCCCCCCceeEEEEEEEeccccccCCCCceeEEEEE
Q 002140 168 LRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASV 247 (960)
Q Consensus 168 L~I~ed~~~gv~V~gLte~~V~S~ee~~~LL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~e~~~~~~~~~~~SkL 247 (960)
+.|++|+.++++|.||+++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|++.... .......|+|
T Consensus 174 l~ired~~~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~----~~~~~~~skL 249 (388)
T 3bfn_A 174 LVIREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERL----APFRQREGKL 249 (388)
T ss_dssp CCCEECTTSCEECTTCCCEECCSHHHHHHHHHHHTC-----------CGGGSEEEEEEEEEEEESS----TTCCEEEEEE
T ss_pred ceEEEcCCCCEEeccceEEEeCCHHHHHHHHHHHhhccccccccCCCCCCCCeEEEEEEEEEeccC----CCCceeEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999875432 2223578999
Q ss_pred EEEEcCCCcccccccccccccccccccccchHHHHHHHHHHhcCCCCcccCCCCcccccccCCCCCCcccceEecCCCCc
Q 002140 248 NFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPAR 327 (960)
Q Consensus 248 ~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mI~tISPs~ 327 (960)
+|||||||||..++++.|.|++|+.+||+||++||+||.+|++++ .||||||||||+||||+|||||+|+|||||||+.
T Consensus 250 ~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~-~hVPYRdSkLTrlLqdsLgGnskT~mIa~iSP~~ 328 (388)
T 3bfn_A 250 YLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGL-PRVPYRDSKLTRLLQDSLGGSAHSILIANIAPER 328 (388)
T ss_dssp EEEECCCTTC--------------CCCCHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHTTTSSSTTCEEEEEEEECCSG
T ss_pred EEEECCCCcccccccCccchhHHHhHhhhhHHHHHHHHHHHhcCC-CCCcCcccHHHHHHHHhhCCCccEEEEEEECCcc
Confidence 999999999999999999999999999999999999999999875 4999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHhhcccccceeccccCHHHH
Q 002140 328 SHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKAL 361 (960)
Q Consensus 328 ~~~eETlsTLrFAsrAK~Ikn~~~vN~~~s~~~l 361 (960)
.+++||++||+||+|||+|+|+|.+|+.++..++
T Consensus 329 ~~~~ETlsTLrfA~rak~I~n~p~~n~~~~~~~l 362 (388)
T 3bfn_A 329 RFYLDTVSALNFAARSKEVINRPFTNESLQPHAL 362 (388)
T ss_dssp GGHHHHHHHHHHHCSEEEEC--------------
T ss_pred ccHHHHHHHHHHHHHHhhCcCcCcccCCCCHHHH
Confidence 9999999999999999999999999999887655
No 5
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=2.5e-84 Score=721.61 Aligned_cols=330 Identities=44% Similarity=0.669 Sum_probs=285.7
Q ss_pred CCCceEEEEecCCCCchhhhcCCCcceEEe-CCcEEEeccCCCCCCCCCceeecceeeCCCCChHHHHhhcHHHHHHHHh
Q 002140 21 REEKILVLVRLRPLSEKEITADEATDWECI-NDTTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVV 99 (960)
Q Consensus 21 ~~~~I~V~VRVRPl~~~E~~~~~~~~~~~~-~~~ti~~~~~~~~~s~~~~~F~FD~VF~~~atQeeVye~~v~plV~svL 99 (960)
.+++|+|+|||||++.+|...++...+.+. ++.++.... ..+.|+||+||+++++|++||+.+++|+|++++
T Consensus 2 e~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~~-------~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l 74 (349)
T 1t5c_A 2 EEGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQVD-------GSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAI 74 (349)
T ss_dssp -CCCEEEEEEECCCSCSSCTTTTCCCCCEEEETTEEEETT-------SSCEEECSCEECTTSCHHHHHHHTTHHHHHHHH
T ss_pred CCCCEEEEEECCCCChhhhccCCCcEEEEeCCCCeEEECC-------CCeEEECCEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 468999999999999999876665443333 233443211 146899999999999999999999999999999
Q ss_pred CCCCEEEEEeccCCCCCccccC------CCchhhHHHHHHHHHhccccceEEEeeeeeeecchhccccCCCC--CCceee
Q 002140 100 SGINSSIFAYGQTSSGKTYTMT------GITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTDN--TPLRLL 171 (960)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM~------GIi~ral~dLF~~I~~~~~~~f~V~vS~lEIYNE~V~DLL~~~~--~~L~I~ 171 (960)
+|||+||||||||||||||||+ ||+|+++++||+.+...++..|.|+|||+|||||+|+|||++.. .++.++
T Consensus 75 ~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i~ 154 (349)
T 1t5c_A 75 QGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQKMKPLIIR 154 (349)
T ss_dssp TTCCEEEEEEESTTSSHHHHHTBCSSSBCHHHHHHHHHHHHGGGCTTEEEEEEEEEEEEETTEEEESSSSSCTTCCEEEE
T ss_pred cCCccceeeecCCCCCCCeEEecCCCCCchHHHHHHHHHHHHHhCcCCcEEEEEEEEEEeCCEEEEccCCCCCCCCceEE
Confidence 9999999999999999999997 59999999999999988888999999999999999999998654 589999
Q ss_pred eCCCCCEEeccceEEEeCCHHHHHHHHHHHHhhhcccccccCCCCCCceeEEEEEEEeccccccCCCCceeEEEEEEEEE
Q 002140 172 DDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVD 251 (960)
Q Consensus 172 ed~~~gv~V~gLte~~V~S~ee~~~LL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~e~~~~~~~~~~~SkL~fVD 251 (960)
+++.++++|.||+++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|++...............|+|+|||
T Consensus 155 ed~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~~skL~lVD 234 (349)
T 1t5c_A 155 EDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVD 234 (349)
T ss_dssp ETTTTEEEETTCCCEECSSHHHHHHHHHHHHHTTSSSSSSSSCTTTTCEEEEEEEEEEEECC-------CEEEEEEEEEE
T ss_pred ECCCCCEEecCCEEEEeCCHHHHHHHHHHhhcccccccccCCCCCCCceEEEEEEEEEeccCCCcCcCccEEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999876543211122345789999999
Q ss_pred cCCCcccccccccccccccccccccchHHHHHHHHHHhcCC-CCcccCCCCcccccccCCCCCCcccceEecCCCCcchH
Q 002140 252 LAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGR-NGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHV 330 (960)
Q Consensus 252 LAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k-~~hIPYRDSKLTrLLqdSLGGNskT~mI~tISPs~~~~ 330 (960)
||||||+.++++.|.|++|+.+||+||++||+||.+|+.++ ..|||||||||||||||+|||||+|+|||||||+ ++
T Consensus 235 LAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~--~~ 312 (349)
T 1t5c_A 235 LAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPV--SF 312 (349)
T ss_dssp CCCGGGTC-------CCCSSSCCCHHHHHHHHHHHHHHHTCCTTSSCGGGSHHHHHTGGGTTSSSEEEEEEEECTT--CS
T ss_pred CCCCccccccCCccccchhhhHHhHHHHHHHHHHHHHhccCCCCCCcccccHHHHHHHHhcCCCceEEEEEEeCCC--CH
Confidence 99999999999999999999999999999999999999875 4699999999999999999999999999999997 58
Q ss_pred HHHHHHHHHHHHhhcccccceeccccCHH
Q 002140 331 EQTRNTLLFACCAKEVTTKAQVNVVMSDK 359 (960)
Q Consensus 331 eETlsTLrFAsrAK~Ikn~~~vN~~~s~~ 359 (960)
+||++||+||+|||+|+|+|++|+.....
T Consensus 313 ~ETlsTL~fA~rak~I~n~~~vn~~~~~~ 341 (349)
T 1t5c_A 313 DETLTALQFASTAKYMKNTPYVNEVSTDE 341 (349)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCCEEC---
T ss_pred HHHHHHHHHHHHHhhcccCceeccCCCCC
Confidence 99999999999999999999999987653
No 6
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=5.8e-84 Score=718.61 Aligned_cols=332 Identities=36% Similarity=0.538 Sum_probs=271.3
Q ss_pred CCceEEEEecCCCCchhhhcCCCcceEEeC-CcEEEeccCCC-----CCCCCCceeecceeeCCCCChHHHHhhcHHHHH
Q 002140 22 EEKILVLVRLRPLSEKEITADEATDWECIN-DTTILYRNTLR-----EGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIA 95 (960)
Q Consensus 22 ~~~I~V~VRVRPl~~~E~~~~~~~~~~~~~-~~ti~~~~~~~-----~~s~~~~~F~FD~VF~~~atQeeVye~~v~plV 95 (960)
.++|+|+|||||++++|...+....+.+.. +.+|.+..+.. .....++.|+||+||+++++|++||+.+++|+|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv 82 (350)
T 2vvg_A 3 SDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKPLI 82 (350)
T ss_dssp -CBCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEECC--------------EEEECSEEECTTCCHHHHHHHTTHHHH
T ss_pred CCCeEEEEEeCCCChhhhccCCceEEEEcCCCCEEEEeeccccccccccCCCceEeeCCEEECCCcchhHHHHHHHHHHH
Confidence 468999999999999998877777776654 34666554321 112345789999999999999999999999999
Q ss_pred HHHhCCCCEEEEEeccCCCCCccccC------CCchhhHHHHHHHHHh-ccccceEEEeeeeeeecchhccccCCCCCCc
Q 002140 96 LSVVSGINSSIFAYGQTSSGKTYTMT------GITECTVADIFDYIHR-HEERAFVLKFSAMEIYNEAIRDLLSTDNTPL 168 (960)
Q Consensus 96 ~svL~G~N~tIfAYGqTGSGKTyTM~------GIi~ral~dLF~~I~~-~~~~~f~V~vS~lEIYNE~V~DLL~~~~~~L 168 (960)
+++++|||+||||||||||||||||+ ||+|+++++||+.+.. ..+..|.|++||+|||||+|+|||+ ....+
T Consensus 83 ~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~-~~~~l 161 (350)
T 2vvg_A 83 DAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIK-NNTKL 161 (350)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTCCTTEEEEEEEEEEEEETTEEEETTT-TEEEE
T ss_pred HHHhCCCceeEEeecCCCCCCCEEeecCCccCchHHHHHHHHHHHHHhhccCCcEEEEEEEEEEeCCEEEEccc-CCcCc
Confidence 99999999999999999999999996 5999999999999984 4567899999999999999999998 44679
Q ss_pred eeeeCCCCCEEeccceEEEeCCHHHHHHHHHHHHhhhcccccccCCCCCCceeEEEEEEEeccccccCCCCceeEEEEEE
Q 002140 169 RLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVN 248 (960)
Q Consensus 169 ~I~ed~~~gv~V~gLte~~V~S~ee~~~LL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~e~~~~~~~~~~~SkL~ 248 (960)
.+++++.+|++|.||+++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|++.... .+......|+|+
T Consensus 162 ~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~---~~~~~~~~skl~ 238 (350)
T 2vvg_A 162 PLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVI---ENKEVIRVGKLN 238 (350)
T ss_dssp CEEEETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC----------CTTCEEEEEEEEEEEEC-------CEEEEEEEE
T ss_pred eeeEcCCCCEEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcceEEEEEEEEEeecc---CCCccEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999875432 223345789999
Q ss_pred EEEcCCCcccccccccccccccccccccchHHHHHHHHHHhcCCCCcccCCCCcccccccCCCCCCcccceEecCCCCcc
Q 002140 249 FVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARS 328 (960)
Q Consensus 249 fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mI~tISPs~~ 328 (960)
|||||||||..++++.|.|++|+.+||+||++||+||.+|++++ .||||||||||+||||+|||||+|+|||||||+..
T Consensus 239 lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~ 317 (350)
T 2vvg_A 239 LVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGA-THIPYRDSKLTRLLQDSLGGNSKTLMCANISPAST 317 (350)
T ss_dssp EEECCCCCC---------------CTTHHHHHHHHHHHHHHHTC-SSCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGG
T ss_pred EEeCCCCCccccccccHHHHHHHHHHhHHHHHHHHHHHHHHcCC-CCCCccccHHHHHHHHhcCCCccEEEEEEeCCccc
Confidence 99999999999999999999999999999999999999999875 69999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhcccccceeccccCH
Q 002140 329 HVEQTRNTLLFACCAKEVTTKAQVNVVMSD 358 (960)
Q Consensus 329 ~~eETlsTLrFAsrAK~Ikn~~~vN~~~s~ 358 (960)
+++||++||+||+|||+|+|+|++|+.+.+
T Consensus 318 ~~~ETl~TL~fA~rak~i~n~~~~n~~~~~ 347 (350)
T 2vvg_A 318 NYDETMSTLRYADRAKQIKNKPRINEDPKD 347 (350)
T ss_dssp GHHHHHHHHHHHHHHTTCBCCCCCCBSCTT
T ss_pred cHHHHHHHHHHHHHHhhccccceecCCchh
Confidence 999999999999999999999999988654
No 7
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=9.2e-84 Score=721.19 Aligned_cols=339 Identities=37% Similarity=0.552 Sum_probs=299.7
Q ss_pred CCceEEEEecCCCCchhhhcCCCcceEEeCCcEEEeccCCCCCCCCCceeecceeeCCCCChHHHHhhcHHHHHHHHhCC
Q 002140 22 EEKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSG 101 (960)
Q Consensus 22 ~~~I~V~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~~~~s~~~~~F~FD~VF~~~atQeeVye~~v~plV~svL~G 101 (960)
.++|+|+|||||+++.|...+....+...+..++..... . ...+.|.||+||+++++|++||+. ++|+|+++++|
T Consensus 4 ~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~v~~~~~--~--~~~~~f~FD~Vf~~~~~Q~~Vy~~-~~~lv~~~l~G 78 (369)
T 3cob_A 4 KGKIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWK--D--DKAKQHMYDRVFDGNATQDDVFED-TKYLVQSAVDG 78 (369)
T ss_dssp CCBCEEEEEECCCCHHHHHTTCCBCEEECSSSEEEEECT--T--SCEEEEECSEEECTTCCHHHHHHT-TTHHHHHHHTT
T ss_pred CCCeEEEEECCCCChhhccCCCcEEEEcCCcEEEEecCC--C--CCceEEecCEEECCCCCcceehhh-hhhhhHhhhcC
Confidence 468999999999999998776655555544445543221 1 224789999999999999999999 79999999999
Q ss_pred CCEEEEEeccCCCCCccccC------CCchhhHHHHHHHHHhccc-cceEEEeeeeeeecchhccccCCCC---CCceee
Q 002140 102 INSSIFAYGQTSSGKTYTMT------GITECTVADIFDYIHRHEE-RAFVLKFSAMEIYNEAIRDLLSTDN---TPLRLL 171 (960)
Q Consensus 102 ~N~tIfAYGqTGSGKTyTM~------GIi~ral~dLF~~I~~~~~-~~f~V~vS~lEIYNE~V~DLL~~~~---~~L~I~ 171 (960)
||+||||||||||||||||+ ||+|+++.+||+.+..... ..|.|++||+|||||+|+|||++.. ..+.++
T Consensus 79 ~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~l~i~ 158 (369)
T 3cob_A 79 YNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIK 158 (369)
T ss_dssp CEEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEECSSCEEESSCCSSSCCCCCEEE
T ss_pred CceEEEEECCCCCCCeEeecCCCCCCchhHHHHHHHHHHHHhhccCceeEEEEEEEEEeCceeeecCCCcccCCcceEEE
Confidence 99999999999999999996 6999999999999987654 5899999999999999999998753 579999
Q ss_pred eCCCCCEEeccceEEEeCCHHHHHHHHHHHHhhhcccccccCCCCCCceeEEEEEEEeccccccCCCCceeEEEEEEEEE
Q 002140 172 DDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVD 251 (960)
Q Consensus 172 ed~~~gv~V~gLte~~V~S~ee~~~LL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~e~~~~~~~~~~~SkL~fVD 251 (960)
+++.++++|.||+++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|++... .......|+|+|||
T Consensus 159 e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~-----~~~~~~~skL~lVD 233 (369)
T 3cob_A 159 KDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNL-----QTQAIARGKLSFVD 233 (369)
T ss_dssp ECTTSCEEEETCCCEEECSHHHHHHHHHHHHHHTCCCSCCTTCHHHHSEEEEEEEEEEEET-----TTCCEEEEEEEEEE
T ss_pred ECCCCCEEccCCEEEEeCCHHHHHHHHHHHhhcceeecccCCCCCCcceEEEEEEEEEecC-----CCCcEEEEEEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999987543 23346789999999
Q ss_pred cCCCcccccccccccccccccccccchHHHHHHHHHHhcCCCCcccCCCCcccccccCCCCCCcccceEecCCCCcchHH
Q 002140 252 LAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVE 331 (960)
Q Consensus 252 LAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mI~tISPs~~~~e 331 (960)
||||||..++++.|.|++|+.+||+||++||+||.+|+.++ .||||||||||+||||+|||||+|+|||||||+..+++
T Consensus 234 LAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ 312 (369)
T 3cob_A 234 LAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGN-QHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLD 312 (369)
T ss_dssp CCCSSCCCCCSSCSHHHHHHHHHTHHHHHHHHHHHHHHTTC-SCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHH
T ss_pred CCCCCcccccCccchhhHHHHHHHHHHHHHHHHHHHHhcCC-CcCCCcCCHHHHHHHHhcCCCccEEEEEEeCCccccHH
Confidence 99999999999999999999999999999999999999864 59999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccceeccccCHHHHHHHHHHHHHHHHH
Q 002140 332 QTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKELARLES 374 (960)
Q Consensus 332 ETlsTLrFAsrAK~Ikn~~~vN~~~s~~~lik~Lq~Ei~~Le~ 374 (960)
||++||+||+|||+|+|+|.+|+.. ..+..|+++++.|+.
T Consensus 313 ETl~TLrfA~rak~i~~~~~~n~~~---~ei~~L~~~l~~~~~ 352 (369)
T 3cob_A 313 ETHNSLTYASRVRSIVNDPSKNVSS---KEVARLKKLVSYWKE 352 (369)
T ss_dssp HHHHHHHHHHHHHTCBCCCCCCEEC---HHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHHhhcccCCcccCCH---HHHHHHHHHHHHHHH
Confidence 9999999999999999999999986 234444444444433
No 8
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=1e-83 Score=719.25 Aligned_cols=331 Identities=37% Similarity=0.533 Sum_probs=276.3
Q ss_pred CCCCceEEEEecCCCCchhhhcCCCcceEEeCC-cEEEeccCCCCCCCCCceeecceeeCCCCChHHHHhhcHHHHHHHH
Q 002140 20 AREEKILVLVRLRPLSEKEITADEATDWECIND-TTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSV 98 (960)
Q Consensus 20 ~~~~~I~V~VRVRPl~~~E~~~~~~~~~~~~~~-~ti~~~~~~~~~s~~~~~F~FD~VF~~~atQeeVye~~v~plV~sv 98 (960)
...++|+|+|||||++..|...+....+.+... .++.+...........+.|+||+||+++++|++||+.+++|+|+++
T Consensus 5 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~ 84 (359)
T 1x88_A 5 EKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEV 84 (359)
T ss_dssp ----CCEEEEEECCCCHHHHHTTCCCCEEEETTTTEEEEEEEEETTEEEEEEEECSEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCChhhhhcCCceEEEEcCCCcEEEEeCCCccCCcCceEEeceEEEeccCchhHHHHHHHHHhHHHH
Confidence 456799999999999999988887777777654 4555433211111234689999999999999999999999999999
Q ss_pred hCCCCEEEEEeccCCCCCccccC-----------------CCchhhHHHHHHHHHhccccceEEEeeeeeeecchhcccc
Q 002140 99 VSGINSSIFAYGQTSSGKTYTMT-----------------GITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLL 161 (960)
Q Consensus 99 L~G~N~tIfAYGqTGSGKTyTM~-----------------GIi~ral~dLF~~I~~~~~~~f~V~vS~lEIYNE~V~DLL 161 (960)
++|||+||||||||||||||||+ ||+|+++++||+.+.. ....|.|++||+|||||+|+|||
T Consensus 85 l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~-~~~~~~v~vS~~EIYnE~i~DLL 163 (359)
T 1x88_A 85 IMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTD-NGTEFSVKVSLLEIYNEELFDLL 163 (359)
T ss_dssp HTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSS-SSEEEEEEEEEEEEETTEEEETT
T ss_pred hCCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHHHHHHHhc-cCceEEEEEEEEEEeCceeeehh
Confidence 99999999999999999999995 6899999999999875 45789999999999999999999
Q ss_pred CCCC---CCceeeeCCC--CCEEeccceEEEeCCHHHHHHHHHHHHhhhcccccccCCCCCCceeEEEEEEEeccccccC
Q 002140 162 STDN---TPLRLLDDPE--KGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLG 236 (960)
Q Consensus 162 ~~~~---~~L~I~ed~~--~gv~V~gLte~~V~S~ee~~~LL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~e~~~ 236 (960)
++.. ..+.+++++. +|++|.||+++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|+......
T Consensus 164 ~~~~~~~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~-- 241 (359)
T 1x88_A 164 NPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTI-- 241 (359)
T ss_dssp CTTSCTTCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEEEEECT--
T ss_pred cccccccccceEEeccCCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCccEEEEEEEEEecccC--
Confidence 8765 4689999984 78999999999999999999999999999999999999999999999999998754321
Q ss_pred CCCceeEEEEEEEEEcCCCcccccccccccccccccccccchHHHHHHHHHHhcCCCCcccCCCCcccccccCCCCCCcc
Q 002140 237 KENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNAR 316 (960)
Q Consensus 237 ~~~~~~~~SkL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPYRDSKLTrLLqdSLGGNsk 316 (960)
.+......|+|+|||||||||..++++.|.|++|+.+||+||++||+||.+|+.+ ..||||||||||+||||+||||++
T Consensus 242 ~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~-~~hvPyRdSkLT~lLqdsLgGnsk 320 (359)
T 1x88_A 242 DGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVER-TPHVPYRESKLTRILQDSLGGRTR 320 (359)
T ss_dssp TSCEEEEEEEEEEEECCCCCC---------------CCCHHHHHHHHHHHHHHTT-CSCCCGGGSHHHHHTGGGSSSSSE
T ss_pred CCCceEEEEEEEEEcCCCCCcccccCCcccchHHHhhhhHHHHHHHHHHHHHhcC-CCCCccccchHHHHHHHHhCCCCe
Confidence 2233456899999999999999999999999999999999999999999999985 469999999999999999999999
Q ss_pred cceEecCCCCcchHHHHHHHHHHHHHhhcccccceecc
Q 002140 317 TAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNV 354 (960)
Q Consensus 317 T~mI~tISPs~~~~eETlsTLrFAsrAK~Ikn~~~vN~ 354 (960)
|+|||||||+..+++||++||+||+|||+|+|+|.+|+
T Consensus 321 t~mIa~vsP~~~~~~ETl~TLrfA~rak~I~n~p~vn~ 358 (359)
T 1x88_A 321 TSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358 (359)
T ss_dssp EEEEEEECCCGGGHHHHHHHHHHHHHHTTCCCCCC---
T ss_pred EEEEEEECCCcccHHHHHHHHHHHHHHhhccCcceeCC
Confidence 99999999999999999999999999999999999986
No 9
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=5.4e-83 Score=705.00 Aligned_cols=312 Identities=40% Similarity=0.575 Sum_probs=292.1
Q ss_pred CCCCceEEEEecCCCCchhhhcCCCcceEEeCCcEEEeccCCCCCCCCCceeecceeeCCCCChHHHHhhcHHHHHHHHh
Q 002140 20 AREEKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVV 99 (960)
Q Consensus 20 ~~~~~I~V~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~~~~s~~~~~F~FD~VF~~~atQeeVye~~v~plV~svL 99 (960)
..+++|+|+|||||++++|...++...+.+.++.++.+. .+.|.||+||+++++|++||+.+++|+|++++
T Consensus 4 ~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~---------~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l 74 (325)
T 1bg2_A 4 LAECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIA---------SKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVL 74 (325)
T ss_dssp CSSCEEEEEEEECCCCHHHHHHTCCBCCEEETTTEEEET---------TEEEECSEEECTTCCHHHHHHHHTHHHHHHHH
T ss_pred CCCCCEEEEEEcCCCChhHhccCCeeEEEECCCCeEEEC---------CEEEECCeEeCCCCCHHHHHHHHhhhhHHHHh
Confidence 457899999999999999998888888888888887662 25899999999999999999999999999999
Q ss_pred CCCCEEEEEeccCCCCCccccC---------CCchhhHHHHHHHHHhc-cccceEEEeeeeeeecchhccccCCCCCCce
Q 002140 100 SGINSSIFAYGQTSSGKTYTMT---------GITECTVADIFDYIHRH-EERAFVLKFSAMEIYNEAIRDLLSTDNTPLR 169 (960)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM~---------GIi~ral~dLF~~I~~~-~~~~f~V~vS~lEIYNE~V~DLL~~~~~~L~ 169 (960)
+|||+||||||||||||||||+ ||+|+++++||+.+... .+..|.|++||+|||||+|+|||++...++.
T Consensus 75 ~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~~l~ 154 (325)
T 1bg2_A 75 EGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLS 154 (325)
T ss_dssp TTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHHCSSEEEEEEEEEEEEETTEEEESSCTTCCSBC
T ss_pred CCCeEEEEEECCCCCCCceEecccCCCcccCccHHHHHHHHHHHHHhccCCceEEEEEEEEEEecCeeeecccCCCCCce
Confidence 9999999999999999999997 58999999999999763 4578999999999999999999999889999
Q ss_pred eeeCCCCCEEeccceEEEeCCHHHHHHHHHHHHhhhcccccccCCCCCCceeEEEEEEEeccccccCCCCceeEEEEEEE
Q 002140 170 LLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNF 249 (960)
Q Consensus 170 I~ed~~~gv~V~gLte~~V~S~ee~~~LL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~e~~~~~~~~~~~SkL~f 249 (960)
+++++.++++|.||+++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|++... .......|+|+|
T Consensus 155 i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~-----~~~~~~~skl~l 229 (325)
T 1bg2_A 155 VHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENT-----QTEQKLSGKLYL 229 (325)
T ss_dssp EEECTTSCEEETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEET-----TTCCEEEEEEEE
T ss_pred EEECCCCCEEecCceEEeCCCHHHHHHHHHHHHhhCceeecCCCCCCCCCeEEEEEEEEEEec-----CCCcEEEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999987543 223457899999
Q ss_pred EEcCCCcccccccccccccccccccccchHHHHHHHHHHhcCCCCcccCCCCcccccccCCCCCCcccceEecCCCCcch
Q 002140 250 VDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSH 329 (960)
Q Consensus 250 VDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mI~tISPs~~~ 329 (960)
||||||||..++++.|.|++|+.+||+||++||+||.+|+++ ..|||||||||||||||+|||||+|+|||||||+..+
T Consensus 230 VDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~-~~hvPyRdSkLT~lLqdsLgGns~t~mia~vsP~~~~ 308 (325)
T 1bg2_A 230 VDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEG-STYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYN 308 (325)
T ss_dssp EECCCSCCCCCCSSSCTTSCCCCCCCHHHHHHHHHHHHHHTT-CSCCCGGGSHHHHHGGGTSSSSCEEEEEEEECCBGGG
T ss_pred EECCCCCcccccCCccccchHHHHHHHHHHHHHHHHHHHHcC-CCCCcccccHHHHHHHHHhCCCCcEEEEEEECCcccc
Confidence 999999999999999999999999999999999999999987 4699999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcc
Q 002140 330 VEQTRNTLLFACCAKEV 346 (960)
Q Consensus 330 ~eETlsTLrFAsrAK~I 346 (960)
++||++||+||+|||+|
T Consensus 309 ~~ETl~TL~fa~rak~I 325 (325)
T 1bg2_A 309 ESETKSTLLFGQRAKTI 325 (325)
T ss_dssp HHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHhccC
Confidence 99999999999999986
No 10
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=4.5e-83 Score=715.72 Aligned_cols=329 Identities=36% Similarity=0.570 Sum_probs=278.6
Q ss_pred CceEEEEecCCCCchhhhcCCCcceEEeCCcEEEeccCCCCCCCCCceeecceeeCCC--------CChHHHHhhcHHHH
Q 002140 23 EKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFDRVFWGD--------CSTTQVYEDGAKEI 94 (960)
Q Consensus 23 ~~I~V~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~~~~s~~~~~F~FD~VF~~~--------atQeeVye~~v~pl 94 (960)
.+|+|+|||||++.+|...+..+.+.+.++.+++.... ......+.|+||+||++. ++|++||+.+++|+
T Consensus 4 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~~--~~~~~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~pl 81 (366)
T 2zfi_A 4 ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPK--QPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEM 81 (366)
T ss_dssp CCEEEEEEECCCCHHHHHTTCCBCEEEETTEEEECCTT--CTTSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHHH
T ss_pred CCcEEEEECCCCChhhccCCCCeEEEECCCcEEEeccC--CCCCCceEEecceEeecCccccccccCcHHHHHHHHHHHH
Confidence 58999999999999999888777777776655543322 122346799999999987 89999999999999
Q ss_pred HHHHhCCCCEEEEEeccCCCCCccccC--------CCchhhHHHHHHHHHhcc--ccceEEEeeeeeeecchhccccCCC
Q 002140 95 ALSVVSGINSSIFAYGQTSSGKTYTMT--------GITECTVADIFDYIHRHE--ERAFVLKFSAMEIYNEAIRDLLSTD 164 (960)
Q Consensus 95 V~svL~G~N~tIfAYGqTGSGKTyTM~--------GIi~ral~dLF~~I~~~~--~~~f~V~vS~lEIYNE~V~DLL~~~ 164 (960)
|+++++|||+||||||||||||||||+ ||+|+++++||+.+.... ...|.|++||+|||||+|+|||++.
T Consensus 82 v~~~l~G~N~tifAYGqTGSGKTyTm~G~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~ 161 (366)
T 2zfi_A 82 LQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPK 161 (366)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHHTBCSGGGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEEEETTCTT
T ss_pred HHHHhcCCeeEEEEeCCCCCCCceEeeCCCccCCCccHHHHHHHHHHHHhhcccCCeeEEEEEEEEEeeCCeEEEccccc
Confidence 999999999999999999999999996 689999999999998754 4579999999999999999999886
Q ss_pred C-CCceeeeCCCCCEEeccceEEEeCCHHHHHHHHHHHHhhhcccccccCCCCCCceeEEEEEEEeccccccCCCCceeE
Q 002140 165 N-TPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTL 243 (960)
Q Consensus 165 ~-~~L~I~ed~~~gv~V~gLte~~V~S~ee~~~LL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~e~~~~~~~~~~ 243 (960)
. ..+++++++.+|++|.||+++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|++..... ........
T Consensus 162 ~~~~l~ire~~~~g~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~-~~~~~~~~ 240 (366)
T 2zfi_A 162 NKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDA-ETNITTEK 240 (366)
T ss_dssp TCSCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECT-TTTCEEEE
T ss_pred cCCCceEEEcCCCCEEEeCCEEEEECCHHHHHHHHHHHhhccccccccCCCCCCcceEEEEEEEEEecccC-CCCcccee
Confidence 5 579999999999999999999999999999999999999999999999999999999999998754321 11223456
Q ss_pred EEEEEEEEcCCCcccccccccccccccccccccchHHHHHHHHHHhcC-----------CCCcccCCCCcccccccCCCC
Q 002140 244 SASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKG-----------RNGHINYRDSKLTRMLQPCLG 312 (960)
Q Consensus 244 ~SkL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~-----------k~~hIPYRDSKLTrLLqdSLG 312 (960)
.|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.+ +..||||||||||+||||+||
T Consensus 241 ~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyRdSkLT~lLqdsLg 320 (366)
T 2zfi_A 241 VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLG 320 (366)
T ss_dssp EEEEEEEECCCGGGC------CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCGGGSHHHHHTGGGSS
T ss_pred EeEEEEEeCCCCccccccCCCccchhhhhhHhHHHHHHHHHHHHHHhcccccccccccccCCcccccccHHHHHHHHHhC
Confidence 899999999999999999999999999999999999999999999863 346999999999999999999
Q ss_pred CCcccceEecCCCCcchHHHHHHHHHHHHHhhcccccceecc
Q 002140 313 GNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNV 354 (960)
Q Consensus 313 GNskT~mI~tISPs~~~~eETlsTLrFAsrAK~Ikn~~~vN~ 354 (960)
|||+|+|||||||+..+++||++||+||+|||+|+|+|.++.
T Consensus 321 Gnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~~~~~~ 362 (366)
T 2zfi_A 321 GNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVNH 362 (366)
T ss_dssp TTCEEEEEEEECCBGGGHHHHHHHHHHHHHTC----------
T ss_pred CCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCCCCCCC
Confidence 999999999999999999999999999999999999999874
No 11
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=6.7e-83 Score=715.65 Aligned_cols=333 Identities=36% Similarity=0.567 Sum_probs=282.7
Q ss_pred CCCCCceEEEEecCCCCchhhhcCCCcceEEeCCcEEEeccCCCCCCCCCceeecceeeCCCCChHHHHhhcHHHHHHHH
Q 002140 19 SAREEKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSV 98 (960)
Q Consensus 19 ~~~~~~I~V~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~~~~s~~~~~F~FD~VF~~~atQeeVye~~v~plV~sv 98 (960)
....++|+|+|||||++.+|...+....+.+.++.++....... ....+.|+||+||+++++|++||+.+++|+|+++
T Consensus 19 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~ 96 (373)
T 2wbe_C 19 KKSNQNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLD--SKLTKKFTFDRSFGPESKQCDVYSVVVSPLIEEV 96 (373)
T ss_dssp CCCCEECEEEEEECCCCHHHHHHTCCBCEEEETTTEEEESSSSS--STTCEEEECSEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEcCCCChhhhccCCCceEEEcCCCeEEEecCCC--CCCceEEeccEEeccccchhHHHHHHHHHHHHHH
Confidence 44567999999999999999887878888888888877765432 2345799999999999999999999999999999
Q ss_pred hCCCCEEEEEeccCCCCCccccC-----------------CCchhhHHHHHHHHHhccccceEEEeeeeeeecchhcccc
Q 002140 99 VSGINSSIFAYGQTSSGKTYTMT-----------------GITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLL 161 (960)
Q Consensus 99 L~G~N~tIfAYGqTGSGKTyTM~-----------------GIi~ral~dLF~~I~~~~~~~f~V~vS~lEIYNE~V~DLL 161 (960)
++|||+||||||||||||||||+ ||+|+++++||+.+... +..|.|++||+|||||+|+|||
T Consensus 97 l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~-~~~~~v~vS~~EIYnE~i~DLL 175 (373)
T 2wbe_C 97 LNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRMM-EVEYTMRISYLELYNEELCDLL 175 (373)
T ss_dssp HHTCCEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHHHHHHHHC-CSCEEEEEEEEEEETTEEEESS
T ss_pred hCCceEEEEeecCCCCCcceecccCccccccccccccCCCcChHHHHHHHHHHHHhc-CceEEEEEEEEEEeCCeEEECC
Confidence 99999999999999999999996 58899999999999764 4689999999999999999999
Q ss_pred CCCC-CCceeeeCC--CCCEEeccceEEEeCCHHHHHHHHHHHHhhhcccccccCCCCCCceeEEEEEEEeccccccCCC
Q 002140 162 STDN-TPLRLLDDP--EKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKE 238 (960)
Q Consensus 162 ~~~~-~~L~I~ed~--~~gv~V~gLte~~V~S~ee~~~LL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~e~~~~~ 238 (960)
++.. ..+++++++ .++++|.||+++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|+...... ..
T Consensus 176 ~~~~~~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~--~~ 253 (373)
T 2wbe_C 176 STDDTTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGI--EG 253 (373)
T ss_dssp CTTSCSCCCEEECSSSSSCEEETTCCCEEESSHHHHHHHHHHHHHHHTTTCSCHHHHHHHSEEEEEEEEEECTTCT--TT
T ss_pred CCCCCCCceeEeccCCCCcEEecCceEEccCCHHHHHHHHHHHhhhhccccccCCCCCCCccEEEEEEEEEecCCC--CC
Confidence 8764 468888874 567999999999999999999999999999999999999999999999999998754321 22
Q ss_pred CceeEEEEEEEEEcCCCccccccccc-ccccccccccccchHHHHHHHHHHhcCCCCcccCCCCcccccccCCCCCCccc
Q 002140 239 NSTTLSASVNFVDLAGSERASQALST-GARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNART 317 (960)
Q Consensus 239 ~~~~~~SkL~fVDLAGSER~~kt~s~-g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPYRDSKLTrLLqdSLGGNskT 317 (960)
......|+|+|||||||||..++++. |.|++|+.+||+||++||+||.+|+++ ..||||||||||+||||+|||||+|
T Consensus 254 ~~~~~~skL~lVDLAGSEr~~~t~~~~g~rl~E~~~INkSL~aLg~vI~aL~~~-~~hvPyRdSkLT~lLqdsLgGnskt 332 (373)
T 2wbe_C 254 EDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDR-APHVPYRESKLTRLLQESLGGRTKT 332 (373)
T ss_dssp CCEEEEEEEEEEECCCC--------------------CHHHHHHHHHHHHHHHC-SSCCCGGGCHHHHHTHHHHHSSSEE
T ss_pred CcceeEEEEEEEECCCCCccccccCccccchhHHHHHHHHHHHHHHHHHHHHcC-CCcCccccchHHHHHHHHhCCCceE
Confidence 23456899999999999999999887 999999999999999999999999985 4699999999999999999999999
Q ss_pred ceEecCCCCcchHHHHHHHHHHHHHhhcccccceeccccC
Q 002140 318 AIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMS 357 (960)
Q Consensus 318 ~mI~tISPs~~~~eETlsTLrFAsrAK~Ikn~~~vN~~~s 357 (960)
+|||||||+..+++||++||+||+|||+|+|+|.+|+.++
T Consensus 333 ~mIa~isP~~~~~~ETlsTLrfA~rak~I~n~p~vN~~~s 372 (373)
T 2wbe_C 333 SIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQKLT 372 (373)
T ss_dssp EEEEEECCBGGGHHHHHHHHHHHHHHHTCEECCCCCEECC
T ss_pred EEEEEeCCCcccHHHHHHHHHHHHHHhhccccceeccccC
Confidence 9999999999999999999999999999999999998764
No 12
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=1.6e-82 Score=725.82 Aligned_cols=333 Identities=34% Similarity=0.528 Sum_probs=274.5
Q ss_pred CCCCceEEEEecCCCCchhhhcCCCcceEEeCC-cEEEeccCCC-C----------CCCCCceeecceeeCCC-------
Q 002140 20 AREEKILVLVRLRPLSEKEITADEATDWECIND-TTILYRNTLR-E----------GSTFPSAYTFDRVFWGD------- 80 (960)
Q Consensus 20 ~~~~~I~V~VRVRPl~~~E~~~~~~~~~~~~~~-~ti~~~~~~~-~----------~s~~~~~F~FD~VF~~~------- 80 (960)
...++|+|+|||||++++|...+..+.+.+... ..+.+..+.. . .....+.|+||+||+++
T Consensus 35 ~~~~~vrV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~F~FD~vF~~~~~~~~~~ 114 (443)
T 2owm_A 35 DPGANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTEDEHY 114 (443)
T ss_dssp CCCEECEEEEEEECCCHHHHHTTCCCCEEECSSSCEEEECCCC---------------CCCEEEECSEEEEESCTTSTTC
T ss_pred CCCCCeEEEEEeCCCChHHhhcCCceEEEEcCCCccEEEecCCCcccccccccccccccCCceEecCeEeCCCCcCCccC
Confidence 345699999999999999988887777766543 2333222110 0 11235789999999864
Q ss_pred CChHHHHhhcHHHHHHHHhCCCCEEEEEeccCCCCCccccC------CCchhhHHHHHHHHHhc----cccceEEEeeee
Q 002140 81 CSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT------GITECTVADIFDYIHRH----EERAFVLKFSAM 150 (960)
Q Consensus 81 atQeeVye~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~------GIi~ral~dLF~~I~~~----~~~~f~V~vS~l 150 (960)
++|++||+.+++|+|+++++|||+||||||||||||||||+ ||+|+++++||+.|... ++..|.|+|||+
T Consensus 115 asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIipr~~~~lF~~i~~~~~~~~~~~~~V~vS~l 194 (443)
T 2owm_A 115 ATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYF 194 (443)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCTTSCCHHHHHHHHHHHHHHHTTTTSTTCEEEEEEEEE
T ss_pred CCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCCCCCchHHHHHHHHHHHHHhhhcccCCceEEEEEEEE
Confidence 89999999999999999999999999999999999999996 69999999999999864 356899999999
Q ss_pred eeecchhccccCCCC-----CCceeeeCCCCCEEeccceEEEeCCHHHHHHHHHHHHhhhcccccccCCCCCCceeEEEE
Q 002140 151 EIYNEAIRDLLSTDN-----TPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRL 225 (960)
Q Consensus 151 EIYNE~V~DLL~~~~-----~~L~I~ed~~~gv~V~gLte~~V~S~ee~~~LL~~g~~~R~~~~T~~N~~SSRSH~IftL 225 (960)
|||||+|+|||++.. ..++|++++.+|++|.||+++.|.+++|++.+|..|.++|++++|.||..|||||+||+|
T Consensus 195 EIYnE~i~DLL~~~~~~~~~~~l~ire~~~~g~~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti 274 (443)
T 2owm_A 195 EVYNEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTI 274 (443)
T ss_dssp EEETTEEEETTSCCCSSCCCCCCEEEEETTTEEEEETCCCEECCSHHHHHHHHHHHHTTSCBCSSSSSCBCTTEEEEEEE
T ss_pred EEECCEeeEccCccccCCcccccceeECCCCCEeccCCEEEEcCCHHHHHHHHHHHHhhCCcccCcCCCccCCCeEEEEE
Confidence 999999999998732 359999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccCCCCceeEEEEEEEEEcCCCcccccccccccccccccccccchHHHHHHHHHHhcCCC------------
Q 002140 226 MIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRN------------ 293 (960)
Q Consensus 226 ~Ie~~~~e~~~~~~~~~~~SkL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~------------ 293 (960)
+|++..... ..+......|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.++.
T Consensus 275 ~v~~~~~~~-~~~~~~~~~skL~lVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~g 353 (443)
T 2owm_A 275 MLKQIHHDL-ETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSG 353 (443)
T ss_dssp EEEEEC--------CCEEEEEEEEEECCCCCC--------------CCSSHHHHHHHHHHHHHCC---------------
T ss_pred EEEEeeccc-CCCCcceEEEEEEEEECCCCccccccCCccccccchhhhcHHHHHHHHHHHHHhcccccccccccccccc
Confidence 998754321 1123345789999999999999999999999999999999999999999999986532
Q ss_pred ---------CcccCCCCcccccccCCCCCCcccceEecCCCCcchHHHHHHHHHHHHHhhcccccceeccc
Q 002140 294 ---------GHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVV 355 (960)
Q Consensus 294 ---------~hIPYRDSKLTrLLqdSLGGNskT~mI~tISPs~~~~eETlsTLrFAsrAK~Ikn~~~vN~~ 355 (960)
.|||||||||||||||+|||||+|+|||||||+ +++||++||+||+|||+|+|+|++|++
T Consensus 354 ~~~~~~~~~~hVPYRdSkLTrLLqdsLgGnskT~mIa~iSP~--~~~ETlsTLrfA~rak~I~n~~~vN~~ 422 (443)
T 2owm_A 354 RGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYDETLSTLRYADQAKRIRTRAVVNQV 422 (443)
T ss_dssp ----------CCCGGGSHHHHHSTTTTTSSCEEEEEEEECSS--CHHHHHHHHHHHHHHTTCEECCCCCCC
T ss_pred cccccccCCCcccCcccHhHHHHHHhhCCCCcEEEEEEeccc--cHHHHHHHHHHHHHHhhccccceeccc
Confidence 399999999999999999999999999999997 599999999999999999999999984
No 13
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=3e-82 Score=704.15 Aligned_cols=322 Identities=37% Similarity=0.534 Sum_probs=265.3
Q ss_pred hcCCCCCCCceEEEEecCCCCchhhhcCCCcceEEeCC-cEEEeccCCCCCCCCCceeecceeeCCCCChHHHHhhcHHH
Q 002140 15 MQAPSAREEKILVLVRLRPLSEKEITADEATDWECIND-TTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKE 93 (960)
Q Consensus 15 ~~~~~~~~~~I~V~VRVRPl~~~E~~~~~~~~~~~~~~-~ti~~~~~~~~~s~~~~~F~FD~VF~~~atQeeVye~~v~p 93 (960)
|+.|...+++|+|+|||||++++|...+....+.+..+ ..+.+. ..+.|.||+||+++++|++||+.+++|
T Consensus 3 ~~~~~~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~--------~~~~f~FD~Vf~~~~~Q~~vy~~~~~p 74 (344)
T 4a14_A 3 MGLPGAEEAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLG--------RDRHFGFHVVLAEDAGQEAVYQACVQP 74 (344)
T ss_dssp ------CCCCCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEET--------TTEEEECSEEECTTCCHHHHHHHHTHH
T ss_pred CCCCCccccceEEEEEecccchHHHhccCeeEEEEcCCCceEEec--------ccceEEEEEEEecCcchhHHHHHHHHH
Confidence 56677788999999999999999988777666655544 333331 246899999999999999999999999
Q ss_pred HHHHHhCCCCEEEEEeccCCCCCccccC------------CCchhhHHHHHHHHHhccccceEEEeeeeeeecchhcccc
Q 002140 94 IALSVVSGINSSIFAYGQTSSGKTYTMT------------GITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLL 161 (960)
Q Consensus 94 lV~svL~G~N~tIfAYGqTGSGKTyTM~------------GIi~ral~dLF~~I~~~~~~~f~V~vS~lEIYNE~V~DLL 161 (960)
+|+++++|||+||||||||||||||||. ||+|+++++||+.+.......|.|++||+|||||+|+|||
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL 154 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLL 154 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHHCC--------CCCCHHHHHHHHHHHHHHHCTTSEEEEEEEEEEEETTEEEETT
T ss_pred HHHHHHhhcCeeEEEecccCCCceEeecccchhhhhhcccCCchHHHHHHHHhcccccceeeEEEEehhhhhHHHHHHHH
Confidence 9999999999999999999999999994 7899999999999999888899999999999999999999
Q ss_pred CCCC--CCceeeeCCCCCEEeccceEEEeCCHHHHHHHHHHHHhhhcccccccCCCCCCceeEEEEEEEeccccccC---
Q 002140 162 STDN--TPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLG--- 236 (960)
Q Consensus 162 ~~~~--~~L~I~ed~~~gv~V~gLte~~V~S~ee~~~LL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~e~~~--- 236 (960)
++.. .++.+++++.++++|.||+++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|++.......
T Consensus 155 ~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~ 234 (344)
T 4a14_A 155 EVGTASRDIQLREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPR 234 (344)
T ss_dssp SSCCCGGGCEEEECTTSCEEEESCCCEECCSHHHHHHHHHHHHHHHHC------CCGGGSEEEEEEEEEEEC--------
T ss_pred HhccccccceeeeccCCCEEEEeeeeccccCHHHHHHHHHhcchhcccCcchhhhcccccceEEEEEeeeCCCCcccCCC
Confidence 8543 57999999999999999999999999999999999999999999999999999999999999876432111
Q ss_pred CCCceeEEEEEEEEEcCCCcccccccccccccccccccccchHHHHHHHHHHhcC--CCCcccCCCCcccccccCCCCCC
Q 002140 237 KENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKG--RNGHINYRDSKLTRMLQPCLGGN 314 (960)
Q Consensus 237 ~~~~~~~~SkL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~--k~~hIPYRDSKLTrLLqdSLGGN 314 (960)
........|+|+|||||||||..++++.|.|++|+.+||+||++||+||.+|+.+ +..|||||||||||||||+||||
T Consensus 235 ~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hvPyRdSkLT~lLqdsLgGn 314 (344)
T 4a14_A 235 PAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILKDSLGGN 314 (344)
T ss_dssp ----CEEEEEEEEEECCCCCCC--------------CCCSHHHHHHHHHHHHTCTTTTTSCCCGGGCHHHHHTTTSSSTT
T ss_pred ccccceeeeeeeEEecccchhhcccCCchhhhhhheeechhHHhhhhHHHhcCCccccCCCCCcchhhHHHHhHhhcCCC
Confidence 1223457899999999999999999999999999999999999999999999864 34699999999999999999999
Q ss_pred cccceEecCCCCcchHHHHHHHHHHHHHhh
Q 002140 315 ARTAIICTLSPARSHVEQTRNTLLFACCAK 344 (960)
Q Consensus 315 skT~mI~tISPs~~~~eETlsTLrFAsrAK 344 (960)
|+|+|||||||+..+++||++||+||+|||
T Consensus 315 skt~mI~~vsP~~~~~~ETl~TL~fA~rAk 344 (344)
T 4a14_A 315 AKTVMIACVSPSSSDFDETLNTLNYASRAQ 344 (344)
T ss_dssp SEEEEEEEECCBGGGHHHHHHHHHHHHHTC
T ss_pred cceEEEEEeCCCccchhHHhhhhhhhhhcC
Confidence 999999999999999999999999999996
No 14
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=2.5e-82 Score=707.16 Aligned_cols=322 Identities=35% Similarity=0.519 Sum_probs=260.8
Q ss_pred CCceEEEEecCCCCchhhhcCCCcceEEeCCcEEEeccCCCC----------------CCCCCceeecceeeCCCCChHH
Q 002140 22 EEKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLRE----------------GSTFPSAYTFDRVFWGDCSTTQ 85 (960)
Q Consensus 22 ~~~I~V~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~~~----------------~s~~~~~F~FD~VF~~~atQee 85 (960)
.++|+|+|||||++.+|...+....+.+.++.++++.+.... .......|.||+||+++++|++
T Consensus 9 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~~Q~~ 88 (355)
T 3lre_A 9 CHHMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVFDETSTQSE 88 (355)
T ss_dssp ---CEEEEEECCCCHHHHHTTCCBSEEECSSSEEEEC------------------------CCEEEECSEEECTTCCHHH
T ss_pred cCCCEEEEEeCcCChHHHhcCCceEEEecCCceEEecCCCCcceeecccccccccchhccCCCceEEeceEECCCCChHH
Confidence 568999999999999999998888888888777766433210 0123458999999999999999
Q ss_pred HHhhcHHHHHHHHhCCCCEEEEEeccCCCCCccccC------CCchhhHHHHHHHHHhcc-ccceEEEeeeeeeecchhc
Q 002140 86 VYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT------GITECTVADIFDYIHRHE-ERAFVLKFSAMEIYNEAIR 158 (960)
Q Consensus 86 Vye~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~------GIi~ral~dLF~~I~~~~-~~~f~V~vS~lEIYNE~V~ 158 (960)
||+.+++|+|+++++|||+||||||||||||||||+ ||+|+++.+||..+.... ...|.|.+||+|||||+|+
T Consensus 89 Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~~~~~~~v~vS~~EIYnE~i~ 168 (355)
T 3lre_A 89 VFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIR 168 (355)
T ss_dssp HHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCCCCCCeeehhhhHHHHhhhhhccCceEEEEEEEEEEECCEEE
Confidence 999999999999999999999999999999999996 599999999999998754 5679999999999999999
Q ss_pred cccCCCCCCceeeeCCCCCEEeccceEEEeCCHHHHHHHHHHHHhhhcccccccCCCCCCceeEEEEEEEeccccccCCC
Q 002140 159 DLLSTDNTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKE 238 (960)
Q Consensus 159 DLL~~~~~~L~I~ed~~~gv~V~gLte~~V~S~ee~~~LL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~e~~~~~ 238 (960)
|||++ ..++.+++++.+|++|.||+++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|++..... ..
T Consensus 169 DLL~~-~~~l~ire~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~--~~ 245 (355)
T 3lre_A 169 DLLVN-SGPLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTA--SI 245 (355)
T ss_dssp ESSSC-CCCBEEEECTTSCEEEETCCCBCCCSHHHHHHHHHHHHHTSCBC-----CBCTTCEEEEEEEEEEEETTS--CT
T ss_pred ECcCC-CCCceeEEcCCCCEEeeeeeEEecCCHHHHHHHHHHHHhcCCcccccCcCCCCCCcEEEEEEEEEecCCC--CC
Confidence 99976 4679999999999999999999999999999999999999999999999999999999999998864321 22
Q ss_pred CceeEEEEEEEEEcCCCcccccccccccccccccccccchHHHHHHHHHHhcCC--CCcccCCCCcccccccCCCCCCcc
Q 002140 239 NSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGR--NGHINYRDSKLTRMLQPCLGGNAR 316 (960)
Q Consensus 239 ~~~~~~SkL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k--~~hIPYRDSKLTrLLqdSLGGNsk 316 (960)
......|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|++++ ..|||||||||||||||+|||||+
T Consensus 246 ~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lL~dsLgGnsk 325 (355)
T 3lre_A 246 NQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKLTRLLKDSLGGNCQ 325 (355)
T ss_dssp TCCCCCEEEEEEECCCCCC-----------------CHHHHHHHHHHHHHC--------CCGGGSHHHHHTTTTSSTTSE
T ss_pred CCCEEEEEEEEEECCCCCcCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCcccCHHHHHHHHhcCCCce
Confidence 233567999999999999999999999999999999999999999999998753 469999999999999999999999
Q ss_pred cceEecCCCCcchHHHHHHHHHHHHHhhcc
Q 002140 317 TAIICTLSPARSHVEQTRNTLLFACCAKEV 346 (960)
Q Consensus 317 T~mI~tISPs~~~~eETlsTLrFAsrAK~I 346 (960)
|+|||||||+..+++||++||+||+|||+|
T Consensus 326 t~mIa~isP~~~~~~ETl~TL~fA~rak~I 355 (355)
T 3lre_A 326 TIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355 (355)
T ss_dssp EEEEEEECCBGGGHHHHHHHHHHHHHTC--
T ss_pred EEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999986
No 15
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=6.7e-81 Score=695.40 Aligned_cols=321 Identities=34% Similarity=0.552 Sum_probs=258.6
Q ss_pred ceEEEEecCCCCchhhhcCCCcceEEeCCcEEEeccCC----CCCCCCCceeecceeeC--------CCCChHHHHhhcH
Q 002140 24 KILVLVRLRPLSEKEITADEATDWECINDTTILYRNTL----REGSTFPSAYTFDRVFW--------GDCSTTQVYEDGA 91 (960)
Q Consensus 24 ~I~V~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~----~~~s~~~~~F~FD~VF~--------~~atQeeVye~~v 91 (960)
+|+|+|||||++++|...+..+.+.+.+..+++..... ......++.|+||+||+ +.++|++||+.++
T Consensus 2 ~VkV~vRvRPl~~~E~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~~~~ 81 (354)
T 3gbj_A 2 KVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCLG 81 (354)
T ss_dssp CEEEEEEECCCCHHHHHHTCCBCEEEETTEEEECCC-----------CCEEEECSEEEECSCTTCTTTBCCHHHHHHHHH
T ss_pred CcEEEEECCCCChhhhccCCceEEEeCCCeEEEeCCccccccccccCCceEEEeeEEeccCccccccccccHHHHHHHhh
Confidence 79999999999999998888887777666554432110 11223467899999994 5678999999999
Q ss_pred HHHHHHHhCCCCEEEEEeccCCCCCccccC------CCchhhHHHHHHHHHhc--cccceEEEeeeeeeecchhccccCC
Q 002140 92 KEIALSVVSGINSSIFAYGQTSSGKTYTMT------GITECTVADIFDYIHRH--EERAFVLKFSAMEIYNEAIRDLLST 163 (960)
Q Consensus 92 ~plV~svL~G~N~tIfAYGqTGSGKTyTM~------GIi~ral~dLF~~I~~~--~~~~f~V~vS~lEIYNE~V~DLL~~ 163 (960)
.|+|+++++|||+||||||||||||||||+ ||+|+++++||..+... ....|.|+|||+|||||+|+|||++
T Consensus 82 ~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~ 161 (354)
T 3gbj_A 82 ENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDP 161 (354)
T ss_dssp HHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHCBTTEEEEEEEEEEEEETTEEEETTC-
T ss_pred HHHHHHHhCCceeEEEeeCCCCCCCceEEecCCCCCchhhHHHHHHHHHHHhhcccccceeeeceeEEEecCeeeEccCC
Confidence 999999999999999999999999999996 69999999999999753 3567999999999999999999987
Q ss_pred CC--CCceeeeCCCCCEEeccceEEEeCCHHHHHHHHHHHHhhhcccccccCCCCCCceeEEEEEEEeccccccCCCCce
Q 002140 164 DN--TPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENST 241 (960)
Q Consensus 164 ~~--~~L~I~ed~~~gv~V~gLte~~V~S~ee~~~LL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~e~~~~~~~~ 241 (960)
.. .++++++++.+|++|.||+++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|++...+. ..+...
T Consensus 162 ~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~-~~~~~~ 240 (354)
T 3gbj_A 162 KGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDV-KSGTSG 240 (354)
T ss_dssp -----CBCBC------CCBTTCCCEEECSHHHHHHHHHHHHHCC----------CTTSEEEEEEEEEEEEECT-TSCEEE
T ss_pred CCCCcceEEEEcCCCCEEEEeeEEEecCCHHHHHHHHHHHHhcCCeeecCCCCCCCcccEEEEEEEEEEeccc-CCCCCC
Confidence 54 589999999999999999999999999999999999999999999999999999999999998754321 122334
Q ss_pred eEEEEEEEEEcCCCcccccccccccccccccccccchHHHHHHHHHHhc-----CCCCcccCCCCcccccccCCCCCCcc
Q 002140 242 TLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSK-----GRNGHINYRDSKLTRMLQPCLGGNAR 316 (960)
Q Consensus 242 ~~~SkL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~-----~k~~hIPYRDSKLTrLLqdSLGGNsk 316 (960)
...|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+. ++..|||||||||||||||+|||||+
T Consensus 241 ~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~hvPyRdSkLT~lLqdsLgGnsk 320 (354)
T 3gbj_A 241 EKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSK 320 (354)
T ss_dssp EEEEEEEEEECCCCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHC------CCCCCGGGSHHHHHTHHHHSTTCE
T ss_pred eeEEEEEEEECCCCCchhhcCCccccchhHHHhhHHHHHHHHHHHHHHhhhcccCCCCcccccccHHHHHHHHHhCCCCe
Confidence 5789999999999999999999999999999999999999999999985 34569999999999999999999999
Q ss_pred cceEecCCCCcchHHHHHHHHHHHHHhhc
Q 002140 317 TAIICTLSPARSHVEQTRNTLLFACCAKE 345 (960)
Q Consensus 317 T~mI~tISPs~~~~eETlsTLrFAsrAK~ 345 (960)
|+|||||||+..+++||++||+||.+|+.
T Consensus 321 t~mIa~vsP~~~~~~ETlsTLr~a~~~~~ 349 (354)
T 3gbj_A 321 TAMVATVSPAADNYDETLSTLRYADRAKH 349 (354)
T ss_dssp EEEEEEECCBGGGHHHHHHHHHHHHHHC-
T ss_pred EEEEEEeCCCcchHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999985
No 16
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=2e-80 Score=696.95 Aligned_cols=319 Identities=32% Similarity=0.471 Sum_probs=262.7
Q ss_pred CCCCCceEEEEecCCCCchhhhcCCCcceEEeCCcEEEeccCCCCCC----CCCceeecceeeCCCCChHHHHhhcHHHH
Q 002140 19 SAREEKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGS----TFPSAYTFDRVFWGDCSTTQVYEDGAKEI 94 (960)
Q Consensus 19 ~~~~~~I~V~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~~~~s----~~~~~F~FD~VF~~~atQeeVye~~v~pl 94 (960)
...+++|+|+|||||++++|...+....+.+.++.++++..+..... ...+.|+||+||+++++|++||+.+++|+
T Consensus 47 ~~~~~~I~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~sQ~~Vy~~~~~pl 126 (387)
T 2heh_A 47 PIEEHRICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPL 126 (387)
T ss_dssp CCCCCSEEEEEEECCCCHHHHHTTCCBCEECCBSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHH
T ss_pred CCCCCCeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCCccccccccccccEEeeeEEEecCCCceeehhhhHHHH
Confidence 34478999999999999999988877777777666666543311110 12368999999999999999999999999
Q ss_pred HHHHhCCCCEEEEEeccCCCCCccccCC------------CchhhHHHHHHHHHhc--cccceEEEeeeeeeecchhccc
Q 002140 95 ALSVVSGINSSIFAYGQTSSGKTYTMTG------------ITECTVADIFDYIHRH--EERAFVLKFSAMEIYNEAIRDL 160 (960)
Q Consensus 95 V~svL~G~N~tIfAYGqTGSGKTyTM~G------------Ii~ral~dLF~~I~~~--~~~~f~V~vS~lEIYNE~V~DL 160 (960)
|+++++|||+||||||||||||||||.| |+|+++++||..+... .+..|.|++||+|||||+|+||
T Consensus 127 v~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~lF~~~~~~~~~~~~~~V~vS~~EIYnE~v~DL 206 (387)
T 2heh_A 127 VQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDL 206 (387)
T ss_dssp HHHHHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHHHHHHTSHHHHTTTCEEEEEEEEEETTEEEET
T ss_pred HHHHhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHHHHHhhcccccCceEEEEEEEEEecCCeEEEC
Confidence 9999999999999999999999999975 8899999999999754 3568999999999999999999
Q ss_pred cCCCCCCceeeeCCCCCEEeccceEEEeCCHHHHHHHHHHHHhhhcccccccCCCCCCceeEEEEEEEeccccccCCCCc
Q 002140 161 LSTDNTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENS 240 (960)
Q Consensus 161 L~~~~~~L~I~ed~~~gv~V~gLte~~V~S~ee~~~LL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~e~~~~~~~ 240 (960)
|++. ..+.+++|+.++++|.||+++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|++..
T Consensus 207 L~~~-~~l~i~ed~~~~v~v~gl~~~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~--------- 276 (387)
T 2heh_A 207 LNKK-AKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKG--------- 276 (387)
T ss_dssp TTTT-EECEEEECTTCCEEEETCCCEEESSHHHHHHHHHHHHHHC---------CGGGSEEEEEEEEESSS---------
T ss_pred CCCC-ccceEEEcCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhCCcccCcCcCCcccceEEEEEEEEECC---------
Confidence 9864 579999999999999999999999999999999999999999999999999999999999997641
Q ss_pred eeEEEEEEEEEcCCCccccccc-ccccccccccccccchHHHHHHHHHHhcCCCCcccCCCCcccccccCC-CCCCcccc
Q 002140 241 TTLSASVNFVDLAGSERASQAL-STGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPC-LGGNARTA 318 (960)
Q Consensus 241 ~~~~SkL~fVDLAGSER~~kt~-s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPYRDSKLTrLLqdS-LGGNskT~ 318 (960)
...|+|+|||||||||..+++ +.+.+++|+.+||+||++||+||.+|+++ ..|||||||||||||||+ |||||+|+
T Consensus 277 -~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~-~~hvPYRdSKLTrlLqdsllGgnskT~ 354 (387)
T 2heh_A 277 -RMHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQN-KAHTPFRESKLTQVLRDSFIGENSRTC 354 (387)
T ss_dssp -SEEEEEEEEECCCCC---------------CHHHHHHHHHHHHHHHHHHTT-CSCCCGGGSHHHHHTGGGGSSTTEEEE
T ss_pred -eeeeEEEEEECCCCccccccccccccchhhHHHHhHHHHHHHHHHHHHhcC-CCCCCccccHHHHHHhhhccCCCCeEE
Confidence 367999999999999998876 45678899999999999999999999975 469999999999999999 69999999
Q ss_pred eEecCCCCcchHHHHHHHHHHHHHhhccccc
Q 002140 319 IICTLSPARSHVEQTRNTLLFACCAKEVTTK 349 (960)
Q Consensus 319 mI~tISPs~~~~eETlsTLrFAsrAK~Ikn~ 349 (960)
|||||||+..+++||++||+||+|||+|++.
T Consensus 355 mIa~isP~~~~~~ETlsTLrfA~rak~I~~~ 385 (387)
T 2heh_A 355 MIATISPGISSCEYTLNTLRYADRVKELSPH 385 (387)
T ss_dssp EEEEECCBGGGHHHHHHHHHHHHHHCC----
T ss_pred EEEEeCCccchHHHHHHHHHHHHHhccCcCC
Confidence 9999999999999999999999999999865
No 17
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.1e-80 Score=692.18 Aligned_cols=318 Identities=32% Similarity=0.474 Sum_probs=255.5
Q ss_pred CCCCCceEEEEecCCCCchhhhcCCCcceEEe-CCcEEEeccCCC------CCCCCCceeecceeeCCCCChHHHHhhcH
Q 002140 19 SAREEKILVLVRLRPLSEKEITADEATDWECI-NDTTILYRNTLR------EGSTFPSAYTFDRVFWGDCSTTQVYEDGA 91 (960)
Q Consensus 19 ~~~~~~I~V~VRVRPl~~~E~~~~~~~~~~~~-~~~ti~~~~~~~------~~s~~~~~F~FD~VF~~~atQeeVye~~v 91 (960)
.+..++|+|+|||||+++.|.. .+.+. +..++.+..... ........|+||+||+ +++|++||+.++
T Consensus 20 ~~~~~~i~V~vRvRP~~~~e~~-----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~-~~sQ~~Vy~~~~ 93 (359)
T 3nwn_A 20 MGTRKKVHAFVRVKPTDDFAHE-----MIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVA 93 (359)
T ss_dssp ----CCEEEEEEECCCSSCCTT-----TEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHT
T ss_pred CCCCCCEEEEEEcCCCCccccc-----ceeecCCCcEEEEecCCccccccccCCcCceEeecCccCC-CCCHHHHHHHHH
Confidence 3556899999999999876632 22333 334555443221 1122346899999997 689999999999
Q ss_pred HHHHHHHhCCCCEEEEEeccCCCCCccccC---------CCchhhHHHHHHHHHhccccceEEEeeeeeeecchhccccC
Q 002140 92 KEIALSVVSGINSSIFAYGQTSSGKTYTMT---------GITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLS 162 (960)
Q Consensus 92 ~plV~svL~G~N~tIfAYGqTGSGKTyTM~---------GIi~ral~dLF~~I~~~~~~~f~V~vS~lEIYNE~V~DLL~ 162 (960)
+|+|+++++|||+||||||||||||||||+ ||+||++++||+.+...++..|.|++||+|||||+|+|||+
T Consensus 94 ~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~ 173 (359)
T 3nwn_A 94 KDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLS 173 (359)
T ss_dssp HHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEETTEEEETTS
T ss_pred HHHHHHHhCCCCEEEEEeCCCCCCccEEeCCccCCccchhhHHHHHHHHHHHhhcCCCCcEEEEEEEEEEeccccccccc
Confidence 999999999999999999999999999996 59999999999999999899999999999999999999997
Q ss_pred CC------CCCceeeeCCCCCEEeccceEEEeCCHHHHHHHHHHHHhhhcccccccCCCCCCceeEEEEEEEeccccccC
Q 002140 163 TD------NTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLG 236 (960)
Q Consensus 163 ~~------~~~L~I~ed~~~gv~V~gLte~~V~S~ee~~~LL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~e~~~ 236 (960)
+. ...+.+++++ .|++|.|++++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|+.....
T Consensus 174 ~~~~~~~~~~~~~~~~~~-~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~--- 249 (359)
T 3nwn_A 174 TLPYVGPSVTPMTIVENP-QGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRT--- 249 (359)
T ss_dssp SSTTSCTTTSCCEEEEET-TEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC------
T ss_pred cccccccccccceEEecC-CceEEeccEEEEecCHHHHHHHHHhhhhhcccccccCccccCcceEEEEEEEEeeccc---
Confidence 53 2456777776 5799999999999999999999999999999999999999999999999999876543
Q ss_pred CCCceeEEEEEEEEEcCCCcccccccccccccccccccccchHHHHHHHHHHhcCCCCcccCCCCcccccccCCCCCCcc
Q 002140 237 KENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNAR 316 (960)
Q Consensus 237 ~~~~~~~~SkL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPYRDSKLTrLLqdSLGGNsk 316 (960)
........|+|+|||||||||..++++.|.|++|+.+||+||++||+||.+|++++..|||||||||||||||+|||||+
T Consensus 250 ~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~~Lg~vI~aL~~~~~~hVPYRdSkLT~lLqdsLgGnsk 329 (359)
T 3nwn_A 250 LSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCN 329 (359)
T ss_dssp ----CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSE
T ss_pred ccCcccccccceeeeccccccccccCCchhHHHhhhhhcccHHHHHHHHHHHHhcCCCcCCcccCHHHHHHHHhcCCCcc
Confidence 22334578999999999999999999999999999999999999999999999877789999999999999999999999
Q ss_pred cceEecCCCCcchHHHHHHHHHHHHHhhcc
Q 002140 317 TAIICTLSPARSHVEQTRNTLLFACCAKEV 346 (960)
Q Consensus 317 T~mI~tISPs~~~~eETlsTLrFAsrAK~I 346 (960)
|+|||||||+..+++||++||+||+|||+|
T Consensus 330 t~mI~~isP~~~~~~ETlsTL~fA~rak~I 359 (359)
T 3nwn_A 330 MVLVTNIYGEAAQLEETLSSLRFASRMKLV 359 (359)
T ss_dssp EEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred EEEEEEeCCchhhHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999987
No 18
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=5.7e-80 Score=682.18 Aligned_cols=314 Identities=33% Similarity=0.534 Sum_probs=267.7
Q ss_pred CCceEEEEecCCCCchhhhcCCCcceEEe---CCcEEEeccCCCCCCCCCceeecceeeCCCCChHHHHhhcHHHHHHHH
Q 002140 22 EEKILVLVRLRPLSEKEITADEATDWECI---NDTTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSV 98 (960)
Q Consensus 22 ~~~I~V~VRVRPl~~~E~~~~~~~~~~~~---~~~ti~~~~~~~~~s~~~~~F~FD~VF~~~atQeeVye~~v~plV~sv 98 (960)
.++|+|+|||||++..|........+.+. ++..+..... ..++.|.||+||+++++|++||+. +.|+|+++
T Consensus 3 ~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~f~FD~Vf~~~~~Q~~Vy~~-v~~lv~~~ 76 (330)
T 2h58_A 3 KGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHK-----GKPVSFELDKVFSPQASQQDVFQE-VQALVTSC 76 (330)
T ss_dssp --CEEEEEEECCCCGGGCSSGGGSBCEEECSSCTTEEEEEET-----TEEEEEECSEEECTTCCHHHHHTT-THHHHHHH
T ss_pred CCCEEEEEEcCCCChhhcccCCCccEEEEeCCCCcEEEEcCC-----CCeeEEecCeEeCCCCCcHhHHHH-HHHHHHHH
Confidence 46899999999999998654332222222 2233333221 124689999999999999999998 58999999
Q ss_pred hCCCCEEEEEeccCCCCCccccC------CCchhhHHHHHHHHHhcc-ccceEEEeeeeeeecchhccccCCCCC---Cc
Q 002140 99 VSGINSSIFAYGQTSSGKTYTMT------GITECTVADIFDYIHRHE-ERAFVLKFSAMEIYNEAIRDLLSTDNT---PL 168 (960)
Q Consensus 99 L~G~N~tIfAYGqTGSGKTyTM~------GIi~ral~dLF~~I~~~~-~~~f~V~vS~lEIYNE~V~DLL~~~~~---~L 168 (960)
++|||+||||||||||||||||+ ||+|+++++||+.+.... +..|.|++||+|||||+|+|||++... .+
T Consensus 77 l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~l~i 156 (330)
T 2h58_A 77 IDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEI 156 (330)
T ss_dssp HTTCCEEEEEESSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSCSSCCCCCC
T ss_pred hCCCEEEEEeECCCCCCCcEEEecCCCCCcHHHHHHHHHHHhhhcccCCceEEEEEEEEEEECCChhhcccccccccceE
Confidence 99999999999999999999997 599999999999998643 568999999999999999999986532 45
Q ss_pred eeeeCCCCCEEeccceEEEeCCHHHHHHHHHHHHhhhcccccccCCCCCCceeEEEEEEEeccccccCCCCceeEEEEEE
Q 002140 169 RLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVN 248 (960)
Q Consensus 169 ~I~ed~~~gv~V~gLte~~V~S~ee~~~LL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~e~~~~~~~~~~~SkL~ 248 (960)
++.+++.++++|.||+++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|++... .......|+|+
T Consensus 157 ~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~-----~~~~~~~skL~ 231 (330)
T 2h58_A 157 RLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDC-----STGLRTTGKLN 231 (330)
T ss_dssp EECTTSSCCEECTTCCCEEECSHHHHHHHHHHHHHHTTCTTCCSCSCGGGSEEEEEEEEEEEET-----TTTEEEEEEEE
T ss_pred EEeecCCCCEecCCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCcCCccEEEEEEEEEEec-----CCCcEEEEEEE
Confidence 5567888999999999999999999999999999999999999999999999999999987532 23346789999
Q ss_pred EEEcCCCcccccccccccccccccccccchHHHHHHHHHHhcCCCCcccCCCCcccccccCCCCCCcccceEecCCCCcc
Q 002140 249 FVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARS 328 (960)
Q Consensus 249 fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mI~tISPs~~ 328 (960)
|||||||||..++++.|.|++|+.+||+||++||+||.+|+.+ ..||||||||||+||||+|||||+|+|||||||+..
T Consensus 232 lVDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~-~~hvPyRdSkLT~lL~dsLgGns~t~mI~~isP~~~ 310 (330)
T 2h58_A 232 LVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSR-QGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEK 310 (330)
T ss_dssp EEECCCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHTT-CSCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCBGG
T ss_pred EEeCCCCCcccccCCchhhhHHHHHhhHhHHHHHHHHHHHhcC-CCCCcccccHHHHHHHHHhCCCceEEEEEEeCCccc
Confidence 9999999999999999999999999999999999999999875 469999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhccc
Q 002140 329 HVEQTRNTLLFACCAKEVT 347 (960)
Q Consensus 329 ~~eETlsTLrFAsrAK~Ik 347 (960)
+++||++||+||+|||+|+
T Consensus 311 ~~~ETl~TL~fA~rak~i~ 329 (330)
T 2h58_A 311 NTSETLYSLKFAERVRSVE 329 (330)
T ss_dssp GHHHHHHHHHHHHHHC---
T ss_pred cHHHHHHHHHHHHHHhhCc
Confidence 9999999999999999986
No 19
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=3.6e-80 Score=690.42 Aligned_cols=322 Identities=32% Similarity=0.431 Sum_probs=273.2
Q ss_pred ceEEEEecCCCCchhhhcCCCcceEEeCCcEEEeccCCCCC----CCCCceeecceeeCCCCChHHHHhhcHHHHHHHHh
Q 002140 24 KILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREG----STFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVV 99 (960)
Q Consensus 24 ~I~V~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~~~~----s~~~~~F~FD~VF~~~atQeeVye~~v~plV~svL 99 (960)
+|+|+|||||+++.|...+....+.+.++.++.+..+.... ....+.|.||+||+++++|++||+.+++|+|.+++
T Consensus 1 ~IrV~vRvRP~~~~E~~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~~ 80 (360)
T 1ry6_A 1 MIKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLIIDLY 80 (360)
T ss_dssp CEEEEEEECCCCHHHHHTTCCBCEEEEETTEEEEEEEEEETTTEEEEEEEEEECSEEECTTCCHHHHHHHHTHHHHHHHH
T ss_pred CeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCccccccccccccceEEeeeEecCCCCHHHHHHHHhhhhhhhhc
Confidence 58999999999999998888888888888777765431100 01235899999999999999999999999999999
Q ss_pred C-CCCEEEEEeccCCCCCccccC-----------CCchhhHHHHHHHHHhc-cccceEEEeeeeeeecchhccccCCCCC
Q 002140 100 S-GINSSIFAYGQTSSGKTYTMT-----------GITECTVADIFDYIHRH-EERAFVLKFSAMEIYNEAIRDLLSTDNT 166 (960)
Q Consensus 100 ~-G~N~tIfAYGqTGSGKTyTM~-----------GIi~ral~dLF~~I~~~-~~~~f~V~vS~lEIYNE~V~DLL~~~~~ 166 (960)
+ |||+||||||||||||||||+ ||+|+++.+||..+... .+..|.|++||+|||||+|+|||++. .
T Consensus 81 ~~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~-~ 159 (360)
T 1ry6_A 81 ENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKR-K 159 (360)
T ss_dssp HHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHHHCSSSCEEEEEEEEEEETTEEEESCCC---
T ss_pred cCCceeEEEeeCCCCCCCCEEEecCCCCCCccCCCcHHHHHHHHHHHHHhhccCCceEEEEEEEEeeCCeeEEcccCC-c
Confidence 6 999999999999999999995 58899999999999864 45689999999999999999999765 4
Q ss_pred CceeeeCCCCCEEeccceEEEeCCHHHHHHHHHHHHhhhcccccccCCCCCCceeEEEEEEEeccccccCCCCceeEEEE
Q 002140 167 PLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSAS 246 (960)
Q Consensus 167 ~L~I~ed~~~gv~V~gLte~~V~S~ee~~~LL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~e~~~~~~~~~~~Sk 246 (960)
.+.+++++.++++|.||+++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|++... ....|+
T Consensus 160 ~~~~~e~~~~~~~v~gl~~~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~--------~~~~sk 231 (360)
T 1ry6_A 160 MVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDINK--------NTSLGK 231 (360)
T ss_dssp ---------CCBCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCCTTGGGGSEEEEEEEEEETTT--------TEEEEE
T ss_pred cceeeEcCCCCEEEcCcEEEEeCCHHHHHHHHHHHhhhhhcccccccCCCccceEEEEEEEEeccC--------CcceeE
Confidence 577889999999999999999999999999999999999999999999999999999999986421 246799
Q ss_pred EEEEEcCCCcccccccccc-cccccccccccchHHHHHHHHHHhcCCCCcccCCCCcccccccCCCCCCcccceEecCCC
Q 002140 247 VNFVDLAGSERASQALSTG-ARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSP 325 (960)
Q Consensus 247 L~fVDLAGSER~~kt~s~g-~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mI~tISP 325 (960)
|+|||||||||..++++.| .+++|+.+||+||++||+||.+|+.+ ..|||||||||||||||+|||||+|+|||||||
T Consensus 232 L~lVDLAGSEr~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~-~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP 310 (360)
T 1ry6_A 232 IAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSD-KNHIPFRDSELTKVLRDIFVGKSKSIMIANISP 310 (360)
T ss_dssp EEEEECCCTTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTTS-TTSCCGGGCHHHHHTGGGGSSSCEEEEEEEECC
T ss_pred EEEEECCCCccccccccccccchHHHHHHHHHHHHHHHHHHHHhcC-CCCCccccCHHHHHHHHHhCCCCeEEEEEEeCC
Confidence 9999999999999998876 46899999999999999999999875 469999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHHhhcccccceeccc
Q 002140 326 ARSHVEQTRNTLLFACCAKEVTTKAQVNVV 355 (960)
Q Consensus 326 s~~~~eETlsTLrFAsrAK~Ikn~~~vN~~ 355 (960)
+..+++||++||+||+|||+|+|.|..|..
T Consensus 311 ~~~~~~ETlsTLrfA~rak~i~n~~~~~~~ 340 (360)
T 1ry6_A 311 TISCCEQTLNTLRYSSRVKNKGNSKLEGKP 340 (360)
T ss_dssp BGGGHHHHHHHHHHHHHHCC----------
T ss_pred CcccHHHHHHHHHHHHHHhhcccCcccCCC
Confidence 999999999999999999999997665544
No 20
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=5.1e-80 Score=697.63 Aligned_cols=320 Identities=32% Similarity=0.462 Sum_probs=263.8
Q ss_pred CCCCceEEEEecCCCCchhhhcCCCcceEEeCCcEEEeccCCCCCC----CCCceeecceeeCCCCChHHHHhhcHHHHH
Q 002140 20 AREEKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGS----TFPSAYTFDRVFWGDCSTTQVYEDGAKEIA 95 (960)
Q Consensus 20 ~~~~~I~V~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~~~~s----~~~~~F~FD~VF~~~atQeeVye~~v~plV 95 (960)
...++|+|+|||||++..|...+....+.+.++.++++..+..... ...+.|+||+||+++++|++||+.+++|+|
T Consensus 68 ~~~~~I~V~vRvRPl~~~E~~~~~~~~v~~~~~~~v~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~tQ~~Vy~~~~~plV 147 (410)
T 1v8k_A 68 IEEHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLV 147 (410)
T ss_dssp TSCCCEEEEEEECCCCHHHHHTTCCBCEECCSSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHH
T ss_pred CCCCCeEEEEEeCCCChhHhhcCCccEEEECCCCEEEEecCcccccccccccceEEeeeEEEecCCChhhhhHHHHHHHH
Confidence 3478999999999999999988877777777777766643311110 123689999999999999999999999999
Q ss_pred HHHhCCCCEEEEEeccCCCCCccccCC------------CchhhHHHHHHHHHhc--cccceEEEeeeeeeecchhcccc
Q 002140 96 LSVVSGINSSIFAYGQTSSGKTYTMTG------------ITECTVADIFDYIHRH--EERAFVLKFSAMEIYNEAIRDLL 161 (960)
Q Consensus 96 ~svL~G~N~tIfAYGqTGSGKTyTM~G------------Ii~ral~dLF~~I~~~--~~~~f~V~vS~lEIYNE~V~DLL 161 (960)
+++++|||+||||||||||||||||.| |+|+++.+||..+... ....|.|++||+|||||+|+|||
T Consensus 148 ~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~lF~~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL 227 (410)
T 1v8k_A 148 QTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLL 227 (410)
T ss_dssp HHHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTSHHHHTTCCEEEEEEEEEETTEEEETT
T ss_pred HHHhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHHHHHHHhhhcccCccEEEEEEEEEeeCCEEEECC
Confidence 999999999999999999999999965 8899999999999754 35689999999999999999999
Q ss_pred CCCCCCceeeeCCCCCEEeccceEEEeCCHHHHHHHHHHHHhhhcccccccCCCCCCceeEEEEEEEeccccccCCCCce
Q 002140 162 STDNTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENST 241 (960)
Q Consensus 162 ~~~~~~L~I~ed~~~gv~V~gLte~~V~S~ee~~~LL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~e~~~~~~~~ 241 (960)
++. ..+.+++|+.++++|.||+++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|++..
T Consensus 228 ~~~-~~l~i~ed~~~~v~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~---------- 296 (410)
T 1v8k_A 228 NKK-AKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKG---------- 296 (410)
T ss_dssp TTT-EEEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------CCCSSEEEEEEEEESSS----------
T ss_pred CCC-CCceEEECCCCCeEecCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCCCCceEEEEEEEEeCC----------
Confidence 864 579999999999999999999999999999999999999999999999999999999999997641
Q ss_pred eEEEEEEEEEcCCCccccccc-ccccccccccccccchHHHHHHHHHHhcCCCCcccCCCCcccccccCC-CCCCcccce
Q 002140 242 TLSASVNFVDLAGSERASQAL-STGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPC-LGGNARTAI 319 (960)
Q Consensus 242 ~~~SkL~fVDLAGSER~~kt~-s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPYRDSKLTrLLqdS-LGGNskT~m 319 (960)
...|+|+|||||||||..+++ +.|.+++|+.+||+||++||+||.+|+.+ ..||||||||||+||||+ |||||+|+|
T Consensus 297 ~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~-~~hIPYRdSKLTrLLqdsllGgnskT~m 375 (410)
T 1v8k_A 297 RLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQN-KAHTPFRESKLTQVLRDSFIGENSRTCM 375 (410)
T ss_dssp SEEEEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC-------CCCCHHHHHTTHHHHSSSEEEEE
T ss_pred cceeEEEEEECCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhcC-CCCCCcccchhHHHHhhcccCCCceEEE
Confidence 367999999999999998876 45678899999999999999999999975 469999999999999999 699999999
Q ss_pred EecCCCCcchHHHHHHHHHHHHHhhcccccce
Q 002140 320 ICTLSPARSHVEQTRNTLLFACCAKEVTTKAQ 351 (960)
Q Consensus 320 I~tISPs~~~~eETlsTLrFAsrAK~Ikn~~~ 351 (960)
||||||+..+++||++||+||+|||.|..+|.
T Consensus 376 Ia~iSP~~~~~~ETlsTLrfA~rak~i~~~~~ 407 (410)
T 1v8k_A 376 IAMISPGISSCEYTLNTLRYADRVKELSHHHH 407 (410)
T ss_dssp EEEECCBGGGHHHHHHHHHHHHHHHTTC----
T ss_pred EEEeCCccccHHHHHHHHHHHHHhccCCCCCC
Confidence 99999999999999999999999999987764
No 21
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=5.1e-80 Score=687.30 Aligned_cols=321 Identities=31% Similarity=0.460 Sum_probs=257.5
Q ss_pred CCceEEEEecCCCCchhhhcCCCcceEEeCC----cEEEeccCCCCCCCCCceeecceeeCCCCChHHHHhhcHHHHHHH
Q 002140 22 EEKILVLVRLRPLSEKEITADEATDWECIND----TTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALS 97 (960)
Q Consensus 22 ~~~I~V~VRVRPl~~~E~~~~~~~~~~~~~~----~ti~~~~~~~~~s~~~~~F~FD~VF~~~atQeeVye~~v~plV~s 97 (960)
.++|+|+|||||+++.|...+....+...++ .++.+... .+......|+||+||+++++|++||+. +.|+|++
T Consensus 4 kgnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~f~FD~Vf~~~~~Q~~vf~~-v~~lv~~ 80 (349)
T 3t0q_A 4 RGNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRN--EGRILSYNFQFDMIFEPSHTNKEIFEE-IRQLVQS 80 (349)
T ss_dssp -CEEEEEEEECCCCTTSCCCCTTEEECCCBC--CBEEEEEEEC--C--CEEEEEEESEEECTTCCHHHHHHH-HHHHHHG
T ss_pred CCCcEEEEEeCCCCccccccCceEEEeeccCCCCceEEEEcCC--CCcccceeeecCEEECCCccHHHHHHH-HHHHHHH
Confidence 4789999999999999876544333332221 23433322 222335689999999999999999998 6799999
Q ss_pred HhCCCCEEEEEeccCCCCCccccC----CCchhhHHHHHHHHHhcc--ccceEEEeeeeeeecchhccccCCCC------
Q 002140 98 VVSGINSSIFAYGQTSSGKTYTMT----GITECTVADIFDYIHRHE--ERAFVLKFSAMEIYNEAIRDLLSTDN------ 165 (960)
Q Consensus 98 vL~G~N~tIfAYGqTGSGKTyTM~----GIi~ral~dLF~~I~~~~--~~~f~V~vS~lEIYNE~V~DLL~~~~------ 165 (960)
+++|||+||||||||||||||||+ ||+|+++++||+.+.... ...|.|++||+|||||+|+|||++..
T Consensus 81 ~l~G~n~tifAYGqTGSGKTyTm~g~~~Giipr~~~~lF~~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~ 160 (349)
T 3t0q_A 81 SLDGYNVCIFAYGQTGSGKTYTMLNAGDGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNID 160 (349)
T ss_dssp GGTTCEEEEEEECSTTSSHHHHHHSTTTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTC---------
T ss_pred HHCCcceeEEEeCCCCCCCceEeCCCCCchhhHHHHHHHHHHHHhhhcCceeEEEEEEEEEEcchhhccccccccccccc
Confidence 999999999999999999999995 799999999999998654 45899999999999999999998643
Q ss_pred -----CCceeeeCC-CCCEEeccceEEEeCCHHHHHHHHHHHHhhhcccccccCCCCCCceeEEEEEEEeccccccCCCC
Q 002140 166 -----TPLRLLDDP-EKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKEN 239 (960)
Q Consensus 166 -----~~L~I~ed~-~~gv~V~gLte~~V~S~ee~~~LL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~e~~~~~~ 239 (960)
..+.+++++ .+|++|.||+++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|++... ..
T Consensus 161 ~~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~-----~~ 235 (349)
T 3t0q_A 161 EILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNL-----HT 235 (349)
T ss_dssp ------CCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHC------------CTGGGSEEEEEEEEEEEET-----TT
T ss_pred cccccccceeEEecCCCCEEEeCCEEEEeCCHHHHHHHHHHHHHhCcccccccccccCCcceEEEEEEEEEec-----CC
Confidence 456677665 4579999999999999999999999999999999999999999999999999987643 22
Q ss_pred ceeEEEEEEEEEcCCCcccccccccccccccccccccchHHHHHHHHHHhcCCC--CcccCCCCcccccccCCCCCCccc
Q 002140 240 STTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRN--GHINYRDSKLTRMLQPCLGGNART 317 (960)
Q Consensus 240 ~~~~~SkL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~--~hIPYRDSKLTrLLqdSLGGNskT 317 (960)
.....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.+.. .||||||||||+||||+|||||+|
T Consensus 236 ~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt 315 (349)
T 3t0q_A 236 GETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLVGDSKT 315 (349)
T ss_dssp CCEEEEEEEEEECCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCCCGGGSHHHHHHGGGSSTTCEE
T ss_pred CCeeEEEEEEEeCCCCCccccccCccccchhHHhhhHhHHHHHHHHHHHhcccCCCCcCCCcCCHHHHHHHHhcCCCceE
Confidence 345789999999999999999999999999999999999999999999987533 599999999999999999999999
Q ss_pred ceEecCCCCcchHHHHHHHHHHHHHhhcccccc
Q 002140 318 AIICTLSPARSHVEQTRNTLLFACCAKEVTTKA 350 (960)
Q Consensus 318 ~mI~tISPs~~~~eETlsTLrFAsrAK~Ikn~~ 350 (960)
+|||||||+..+++||++||+||+|++.|+..+
T Consensus 316 ~mi~~vsP~~~~~~ETl~TL~fA~rv~~ik~~~ 348 (349)
T 3t0q_A 316 LMFVNIPPDPNHISETLNSLRFASKVNSTKIAK 348 (349)
T ss_dssp EEEEEECCCGGGHHHHHHHHHHHHHHHC-----
T ss_pred EEEEEeCCchhhHHHHHHHHHHHHHhhhcccCC
Confidence 999999999999999999999999999998653
No 22
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.7e-79 Score=688.19 Aligned_cols=319 Identities=32% Similarity=0.454 Sum_probs=246.4
Q ss_pred CCCceEEEEecCCCCchhhhcCCCcc-eEE------eCCcEEEeccCCC--------CCCCCCceeecceeeCCCCChHH
Q 002140 21 REEKILVLVRLRPLSEKEITADEATD-WEC------INDTTILYRNTLR--------EGSTFPSAYTFDRVFWGDCSTTQ 85 (960)
Q Consensus 21 ~~~~I~V~VRVRPl~~~E~~~~~~~~-~~~------~~~~ti~~~~~~~--------~~s~~~~~F~FD~VF~~~atQee 85 (960)
-.++|+|+|||||++++|...+.... +.. .++.++.+..+.. ........|+||+||+++++|++
T Consensus 20 ~~~~irV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~ 99 (376)
T 2rep_A 20 LKGNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSFDRVFPPGSGQDE 99 (376)
T ss_dssp ---CEEEEEEECCCCTTSCCCCGGGSBCCC------CCCCEEECCC-----------------CEEECSEEECTTCCHHH
T ss_pred cCCCeEEEEEcCCCChhhcccCCceEEEccCcccccCCCcEEEEecCCccccccccccCCCCceeeeecEEcCCcccchh
Confidence 35789999999999999976543211 111 2345555543110 01123468999999999999999
Q ss_pred HHhhcHHHHHHHHhCCCCEEEEEeccCCCCCccccC----------CCchhhHHHHHHHHHhcc--ccceEEEeeeeeee
Q 002140 86 VYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT----------GITECTVADIFDYIHRHE--ERAFVLKFSAMEIY 153 (960)
Q Consensus 86 Vye~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~----------GIi~ral~dLF~~I~~~~--~~~f~V~vS~lEIY 153 (960)
||+. +.|+|+++++|||+||||||||||||||||+ ||+|+++++||+.+.... ...|.|++||+|||
T Consensus 100 Vy~~-v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIY 178 (376)
T 2rep_A 100 VFEE-IAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIY 178 (376)
T ss_dssp HHHH-HHHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEEEE
T ss_pred hhhh-HHHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCcHHHHHHHHHHHHHHhhcCCeEEEEEEEEEEEE
Confidence 9998 5689999999999999999999999999996 489999999999998643 46899999999999
Q ss_pred cchhccccCCC-----CCCceeeeC--CCCCEEeccceEEEeCCHHHHHHHHHHHHhhhcccccccCCCCCCceeEEEEE
Q 002140 154 NEAIRDLLSTD-----NTPLRLLDD--PEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLM 226 (960)
Q Consensus 154 NE~V~DLL~~~-----~~~L~I~ed--~~~gv~V~gLte~~V~S~ee~~~LL~~g~~~R~~~~T~~N~~SSRSH~IftL~ 226 (960)
||+|+|||++. ...+.++++ +.++++|.||+++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+
T Consensus 179 nE~i~DLL~~~~~~~~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~ 258 (376)
T 2rep_A 179 NETVRDLLATGTRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQ 258 (376)
T ss_dssp TTEEEETTCCC--------CCEEEC---CCCEEETTCCCEEECSHHHHHHHHHHHHHHHHHCC-----CGGGSEEEEEEE
T ss_pred CCEeeEccccccccccCCCceEEeccCCCCCEEECCcEEEEeCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEE
Confidence 99999999875 246788887 67899999999999999999999999999999999999999999999999999
Q ss_pred EEeccccccCCCCceeEEEEEEEEEcCCCcccccccccc----cccccccccccchHHHHHHHHHHhcCCCCcccCCCCc
Q 002140 227 IESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTG----ARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSK 302 (960)
Q Consensus 227 Ie~~~~e~~~~~~~~~~~SkL~fVDLAGSER~~kt~s~g----~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPYRDSK 302 (960)
|++... .......|+|+|||||||||..++++.| .|++|+.+||+||++||+||.+|+++ ..||||||||
T Consensus 259 v~~~~~-----~~~~~~~skL~lVDLAGSEr~~~t~~~g~~~~~rlkE~~~INkSL~aLg~vI~aL~~~-~~hVPYRdSk 332 (376)
T 2rep_A 259 ISGEHS-----SRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSNK-ESHVPYRNSK 332 (376)
T ss_dssp EEEEES-----SSCCEEEEEEEEEECCCCC------------------------CHHHHHHHHHHHHTT-CSCCCGGGSH
T ss_pred EEEEec-----CCCcEEEeEEEEEECCCCcccccccccCccccchhhHHhHhhHHHHHHHHHHHHHhcC-CCccCCcCCH
Confidence 987542 2234568999999999999999999999 99999999999999999999999975 4699999999
Q ss_pred ccccccCCCCCCcccceEecCCCCcchHHHHHHHHHHHHHhhcc
Q 002140 303 LTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEV 346 (960)
Q Consensus 303 LTrLLqdSLGGNskT~mI~tISPs~~~~eETlsTLrFAsrAK~I 346 (960)
|||||||+|||||+|+|||||||+..+++||++||+||+|++++
T Consensus 333 LT~LLqdsLgGnskT~mIa~isP~~~~~~ETlsTLrfA~Rv~~~ 376 (376)
T 2rep_A 333 LTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQC 376 (376)
T ss_dssp HHHHTGGGTSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999864
No 23
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=1.5e-79 Score=685.02 Aligned_cols=319 Identities=32% Similarity=0.476 Sum_probs=257.3
Q ss_pred CCCCCCceEEEEecCCCCchhhhcCCCcceEEe-CCcEEEeccCCCC------CCCCCceeecceeeCCCCChHHHHhhc
Q 002140 18 PSAREEKILVLVRLRPLSEKEITADEATDWECI-NDTTILYRNTLRE------GSTFPSAYTFDRVFWGDCSTTQVYEDG 90 (960)
Q Consensus 18 ~~~~~~~I~V~VRVRPl~~~E~~~~~~~~~~~~-~~~ti~~~~~~~~------~s~~~~~F~FD~VF~~~atQeeVye~~ 90 (960)
+.+..++|+|+|||||+.+.+ ...+.+. +..++.+...... .......|+||+||+ +++|++||+.+
T Consensus 18 ~~~~~g~IrV~vRvRP~~~~~-----~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~F~fD~Vf~-~~sQ~~Vy~~~ 91 (358)
T 2nr8_A 18 GSGTRKKVHAFVRVKPTDDFA-----HEMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETV 91 (358)
T ss_dssp -----CCEEEEEEECCCSSCC-----TTTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHH
T ss_pred CCCCCCCeEEEEEcCCCCCCc-----cceeEECCCCCEEEEecCCccccccccCCCcceEEECCeecC-CcCHHHHHHHH
Confidence 345568999999999986543 2334443 3455555433211 112345799999995 88999999999
Q ss_pred HHHHHHHHhCCCCEEEEEeccCCCCCccccC---------CCchhhHHHHHHHHHhccccceEEEeeeeeeecchhcccc
Q 002140 91 AKEIALSVVSGINSSIFAYGQTSSGKTYTMT---------GITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLL 161 (960)
Q Consensus 91 v~plV~svL~G~N~tIfAYGqTGSGKTyTM~---------GIi~ral~dLF~~I~~~~~~~f~V~vS~lEIYNE~V~DLL 161 (960)
++|+|+++++|||+||||||||||||||||+ ||+|+++++||+.++...+..|.|++||+|||||+|+|||
T Consensus 92 ~~~lv~~~l~G~N~tIfAYGqTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL 171 (358)
T 2nr8_A 92 AKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLL 171 (358)
T ss_dssp THHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEETTEEEETT
T ss_pred HHHHHHHHhCCCceEEEEECCCCCCCceEecccccccccCCcHHHHHHHHHHHHhhcCCceEEEEEEEEEEeCCeeeECc
Confidence 9999999999999999999999999999995 6899999999999999888899999999999999999999
Q ss_pred CCC------CCCceeeeCCCCCEEeccceEEEeCCHHHHHHHHHHHHhhhcccccccCCCCCCceeEEEEEEEecccccc
Q 002140 162 STD------NTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFL 235 (960)
Q Consensus 162 ~~~------~~~L~I~ed~~~gv~V~gLte~~V~S~ee~~~LL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~e~~ 235 (960)
++. ..++.+++++ .|++|.||+++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|++.....
T Consensus 172 ~~~~~~~~~~~~l~i~e~~-~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~- 249 (358)
T 2nr8_A 172 STLPYVGPSVTPMTIVENP-QGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTL- 249 (358)
T ss_dssp SSSTTSCTTTSCCEEEEET-TEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC-----
T ss_pred CCccccCccCCceEEEECC-CceEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcCeEEEEEEEEEEeccC-
Confidence 863 3578999998 78999999999999999999999999999999999999999999999999998764321
Q ss_pred CCCCceeEEEEEEEEEcCCCcccccccccccccccccccccchHHHHHHHHHHhcCCCCcccCCCCcccccccCCCCCCc
Q 002140 236 GKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNA 315 (960)
Q Consensus 236 ~~~~~~~~~SkL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPYRDSKLTrLLqdSLGGNs 315 (960)
.......|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.++..||||||||||+||||+|||||
T Consensus 250 --~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hiPyRdSkLT~LLqdsLgGns 327 (358)
T 2nr8_A 250 --SEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNC 327 (358)
T ss_dssp -----CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSS
T ss_pred --CCCCEEEEEEEEEECCCCCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCC
Confidence 223356899999999999999999999999999999999999999999999987778999999999999999999999
Q ss_pred ccceEecCCCCcchHHHHHHHHHHHHHhhcc
Q 002140 316 RTAIICTLSPARSHVEQTRNTLLFACCAKEV 346 (960)
Q Consensus 316 kT~mI~tISPs~~~~eETlsTLrFAsrAK~I 346 (960)
+|+|||||||+..+++||++||+||+|||.|
T Consensus 328 kt~mIa~isP~~~~~~ETlsTLrfA~Rak~I 358 (358)
T 2nr8_A 328 NMVLVTNIYGEAAQLEETLSSLRFASRMKLV 358 (358)
T ss_dssp EEEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred eEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999986
No 24
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=6.7e-80 Score=685.74 Aligned_cols=319 Identities=32% Similarity=0.476 Sum_probs=261.7
Q ss_pred CceEEEEecCCCCc-hhhhcCCCcceEEe--C----CcEEEeccCCCCCCCCCceeecceeeCCCCChHHHHhhcHHHHH
Q 002140 23 EKILVLVRLRPLSE-KEITADEATDWECI--N----DTTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIA 95 (960)
Q Consensus 23 ~~I~V~VRVRPl~~-~E~~~~~~~~~~~~--~----~~ti~~~~~~~~~s~~~~~F~FD~VF~~~atQeeVye~~v~plV 95 (960)
++|+|+|||||+++ .|.. ....+.+. + ..++.+... ......+.|+||+||+++++|++||+. +.|+|
T Consensus 3 ~nIrV~vRvRP~~~~~e~~--~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~-v~~lv 77 (347)
T 1f9v_A 3 GNIRVYCRIRPALKNLENS--DTSLINVNEFDDNSGVQSMEVTKI--QNTAQVHEFKFDKIFDQQDTNVDVFKE-VGQLV 77 (347)
T ss_dssp CEEEEEEEECCCCTTTCCC--TTEEEEECCCBTTTTBEEEEEEEG--GGTTCEEEEEESEEECTTCCHHHHHHH-HHHHH
T ss_pred CCeEEEEEeCCCCcccccC--CCceEEEecccCCCCceEEEEecC--CCCcCceEEeeCEEECCCCCHHHHHHH-HHHHH
Confidence 68999999999987 4422 22222221 1 123443322 112235789999999999999999998 67999
Q ss_pred HHHhCCCCEEEEEeccCCCCCccccC----CCchhhHHHHHHHHHhcc--ccceEEEeeeeeeecchhccccCCCCC---
Q 002140 96 LSVVSGINSSIFAYGQTSSGKTYTMT----GITECTVADIFDYIHRHE--ERAFVLKFSAMEIYNEAIRDLLSTDNT--- 166 (960)
Q Consensus 96 ~svL~G~N~tIfAYGqTGSGKTyTM~----GIi~ral~dLF~~I~~~~--~~~f~V~vS~lEIYNE~V~DLL~~~~~--- 166 (960)
+++++|||+||||||||||||||||+ ||+|+++++||+.+.... ...|.|++||+|||||+|+|||++...
T Consensus 78 ~~~l~G~n~tifAYGqTGSGKTyTM~G~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~ 157 (347)
T 1f9v_A 78 QSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKE 157 (347)
T ss_dssp GGGGGTCCEEEEEECCTTSSHHHHHHSTTTSHHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEEETTEEEETTC-------
T ss_pred HHhcCCceeEEEEECCCCCCCcEeccCCCCCchHHHHHHHHHHHHhhhhcCCceEEEEEEEEEECCeeeeccCCcccccc
Confidence 99999999999999999999999995 799999999999998644 458999999999999999999987643
Q ss_pred ------CceeeeC-CCCCEEeccceEEEeCCHHHHHHHHHHHHhhhcccccccCCCCCCceeEEEEEEEeccccccCCCC
Q 002140 167 ------PLRLLDD-PEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKEN 239 (960)
Q Consensus 167 ------~L~I~ed-~~~gv~V~gLte~~V~S~ee~~~LL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~e~~~~~~ 239 (960)
.+.++++ +.++++|.||+++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|++... ..
T Consensus 158 ~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~-----~~ 232 (347)
T 1f9v_A 158 DTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNA-----KT 232 (347)
T ss_dssp ------CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHHHC-----------CCGGGSEEEEEEEEEEECC-------
T ss_pred ccccCCceeEEEecCCCceEecCCEEEEcCCHHHHHHHHHHHHhccceeeccCCCCCCCceEEEEEEEEEecC-----CC
Confidence 4667765 46789999999999999999999999999999999999999999999999999987542 22
Q ss_pred ceeEEEEEEEEEcCCCcccccccccccccccccccccchHHHHHHHHHHhcCC--CCcccCCCCcccccccCCCCCCccc
Q 002140 240 STTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGR--NGHINYRDSKLTRMLQPCLGGNART 317 (960)
Q Consensus 240 ~~~~~SkL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k--~~hIPYRDSKLTrLLqdSLGGNskT 317 (960)
.....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.++ ..||||||||||+||||+|||||+|
T Consensus 233 ~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt 312 (347)
T 1f9v_A 233 GAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKT 312 (347)
T ss_dssp CCEEEEEEEEEECCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTSCC---CCCCGGGSHHHHHHHHHHSTTCEE
T ss_pred CceeeeEEEEEECCCCccccccccchhhhHHHHHHhHHHHHHHHHHHHHhcccCCCCcCccccCHHHHHHHHHhCCCccE
Confidence 34578999999999999999999999999999999999999999999998764 4799999999999999999999999
Q ss_pred ceEecCCCCcchHHHHHHHHHHHHHhhcccccce
Q 002140 318 AIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQ 351 (960)
Q Consensus 318 ~mI~tISPs~~~~eETlsTLrFAsrAK~Ikn~~~ 351 (960)
+|||||||+..+++||++||+||+||+.|+..++
T Consensus 313 ~mI~~vsP~~~~~~ETl~TLrfA~r~~~i~~~~r 346 (347)
T 1f9v_A 313 LMFVNISPSSSHINETLNSLRFASKVNSTRLVSR 346 (347)
T ss_dssp EEEEEECCSGGGHHHHHHHHHHHHHHCCTTTC--
T ss_pred EEEEEeCCccccHHHHHHHHHHHHHHhhhccCCC
Confidence 9999999999999999999999999999998764
No 25
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=6.2e-78 Score=682.58 Aligned_cols=323 Identities=35% Similarity=0.529 Sum_probs=264.9
Q ss_pred CCceEEEEecCCCCchhhhcCCCcceEEeCCcEEEeccCCCC--CCCCCceeecceeeCCCCChHHHHhhcHHHHHHHHh
Q 002140 22 EEKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLRE--GSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVV 99 (960)
Q Consensus 22 ~~~I~V~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~~~--~s~~~~~F~FD~VF~~~atQeeVye~~v~plV~svL 99 (960)
.++|+|+|||||+++.|.... .+.|...++.++.+...... .....+.|+||+||+++++|++||+. +.|+|++++
T Consensus 58 ~gnIrV~vRvRP~~~~E~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~Vf~~-v~plv~~~l 135 (412)
T 3u06_A 58 RDNIRVFCRIRPPLESEENRM-CCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEM-VSPLIQSAL 135 (412)
T ss_dssp TCSEEEEEEECCCCGGGTTSC-BCEEEEEETTEEEEECCC-------CCCEEECSEEECTTCCHHHHHTT-THHHHHHHH
T ss_pred CCCEEEEEEcCCCCchhccCc-ceEEEecCCCEEEEecCCcccccccCceEEeeCeEcCCCCCHHHHHHH-HHHHHHHHH
Confidence 468999999999999986543 45566777777766543221 11235789999999999999999986 679999999
Q ss_pred CCCCEEEEEeccCCCCCccccC------CCchhhHHHHHHHHHhcc--ccceEEEeeeeeeecchhccccCCCCCCc--e
Q 002140 100 SGINSSIFAYGQTSSGKTYTMT------GITECTVADIFDYIHRHE--ERAFVLKFSAMEIYNEAIRDLLSTDNTPL--R 169 (960)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM~------GIi~ral~dLF~~I~~~~--~~~f~V~vS~lEIYNE~V~DLL~~~~~~L--~ 169 (960)
+|||+||||||||||||||||+ ||+|+++.+||+.+.... ...|.|++||+|||||+|+|||++...++ +
T Consensus 136 ~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~i~ 215 (412)
T 3u06_A 136 DGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIR 215 (412)
T ss_dssp TTCCEEEEEESSTTSSHHHHHTEETTEECHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTCCSCCCCCEE
T ss_pred CCCceEEEEecCCCCCCeeEecCCCCCCccHHHHHHHHHHhhhhhcccCceEEEEEEEEEEeCCeeEEcCCCCCCCceee
Confidence 9999999999999999999996 699999999999998643 46899999999999999999998776654 4
Q ss_pred eeeCCCCCEEeccceEEEeCCHHHHHHHHHHHHhhhcccccccCCCCCCceeEEEEEEEeccccccCCCCceeEEEEEEE
Q 002140 170 LLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNF 249 (960)
Q Consensus 170 I~ed~~~gv~V~gLte~~V~S~ee~~~LL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~e~~~~~~~~~~~SkL~f 249 (960)
+.+++.++++|.||+++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|.+... .......|+|+|
T Consensus 216 ~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~-----~~~~~~~~kL~l 290 (412)
T 3u06_A 216 MAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHA-----EKQEISVGSINL 290 (412)
T ss_dssp ECSSCTTSEEETTCCCEECCSHHHHHHHHHHHHHHCC-----CHHHHTTCEEEEEEEEEEEET-----TTTEEEEEEEEE
T ss_pred eeecCCCCEEEcceEEEEeCCHHHHHHHHHHHHhcccccccCCCCCCcCceEEEEEEEEEEeC-----CCCCEEEEEEEE
Confidence 557788999999999999999999999999999999999999999999999999999987543 233467899999
Q ss_pred EEcCCCcccccccccccccccccccccchHHHHHHHHHHhcCCCCcccCCCCcccccccCCCCCCcccceEecCCCCcch
Q 002140 250 VDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSH 329 (960)
Q Consensus 250 VDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mI~tISPs~~~ 329 (960)
||||||||.. .|.|++|+.+||+||++||+||.+|+.+ ..||||||||||+||||+|||||+|+|||||||+..+
T Consensus 291 VDLAGSEr~~----~~~rl~E~~~INkSL~aLg~vI~aL~~~-~~hiPyRdSkLT~LLqdsLgGnskt~mI~~vsP~~~~ 365 (412)
T 3u06_A 291 VDLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQK-QDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDC 365 (412)
T ss_dssp EECCCCCC--------------CTTTHHHHHHHHHHHHHHTT-CSCCCGGGSHHHHHHGGGTSTTCEEEEEEEECCBGGG
T ss_pred EECCCCCcCC----ccchhHhHHHHhHHHHHHHHHHHHHhcc-CCCCCccccHHHHHHHHhcCCCceEEEEEEeCCChhh
Confidence 9999999974 4689999999999999999999999975 5699999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccc-cceecccc
Q 002140 330 VEQTRNTLLFACCAKEVTT-KAQVNVVM 356 (960)
Q Consensus 330 ~eETlsTLrFAsrAK~Ikn-~~~vN~~~ 356 (960)
++||++||+||+|++.|+. +++.|...
T Consensus 366 ~~ETl~TLrfA~rv~~i~~~~~~~n~~~ 393 (412)
T 3u06_A 366 FQESVKSLRFAASVNSCKMTKAKRNRYL 393 (412)
T ss_dssp HHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHHHHHHHhhcccccccccccC
Confidence 9999999999999999984 45555544
No 26
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=8.5e-78 Score=667.75 Aligned_cols=310 Identities=28% Similarity=0.409 Sum_probs=242.3
Q ss_pred hhcCCCCCCCceEEEEecCCCCchhhhcCCCcceEEeC---CcEEEeccCCCCCCCCCceeecceeeCCCCChHHHHhhc
Q 002140 14 KMQAPSAREEKILVLVRLRPLSEKEITADEATDWECIN---DTTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDG 90 (960)
Q Consensus 14 ~~~~~~~~~~~I~V~VRVRPl~~~E~~~~~~~~~~~~~---~~ti~~~~~~~~~s~~~~~F~FD~VF~~~atQeeVye~~ 90 (960)
+........++|+|+|||||+++.|. .++...+.+.. ...+.+. .+.|+||+||+++++|++||+.+
T Consensus 13 ~r~m~~~~~~~VrV~vRvRP~~~~e~-~~~~~~v~~~~~~~~~~~~~~---------~~~F~FD~Vf~~~~sQ~~Vy~~~ 82 (344)
T 3dc4_A 13 RRGMEGAKLSAVRIAVREAPYRQFLG-RREPSVVQFPPWSDGKSLIVD---------QNEFHFDHAFPATISQDEMYQAL 82 (344)
T ss_dssp ------CCCSEEEEEEEECCCC--------CCSEECCSSSCSSEEEET---------TEEEECSEEECTTCCHHHHHHHH
T ss_pred cCCCCCCCCCCeEEEEECCCCCcccc-cCCceEEEecCCCCCceEEec---------CcEEEcceEECCCCCHHHHHHhh
Confidence 34555677789999999999998773 34444554442 3344331 36899999999999999999999
Q ss_pred HHHHHHHHhCCCCEEEEEeccCCCCCccccC------------CCchhhHHHHHHHHHhccc---cceEEEeeeeeeecc
Q 002140 91 AKEIALSVVSGINSSIFAYGQTSSGKTYTMT------------GITECTVADIFDYIHRHEE---RAFVLKFSAMEIYNE 155 (960)
Q Consensus 91 v~plV~svL~G~N~tIfAYGqTGSGKTyTM~------------GIi~ral~dLF~~I~~~~~---~~f~V~vS~lEIYNE 155 (960)
++|+|+++++|||+||||||||||||||||. ||+|+++++||+.+....+ ..|.|++||+|||||
T Consensus 83 ~~plv~~~l~G~N~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra~~~LF~~i~~~~~~~~~~~~v~vS~~EIYnE 162 (344)
T 3dc4_A 83 ILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNE 162 (344)
T ss_dssp THHHHHHHHHTCCEEEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHHHHHHHHHHHHSSSSCSSCCEEEEEEEEEESS
T ss_pred ccchhhHhhCCCceEEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHHHHHHHHHHHhhhhccccceEEEEEEEEEeCC
Confidence 9999999999999999999999999999994 8999999999999986543 469999999999999
Q ss_pred hhccccCCCCCCceeeeCCCCCEEeccceEEEeCCHHHHHHHHHHHHhhhcccccccCCCCCCceeEEEEEEEecccccc
Q 002140 156 AIRDLLSTDNTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFL 235 (960)
Q Consensus 156 ~V~DLL~~~~~~L~I~ed~~~gv~V~gLte~~V~S~ee~~~LL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~e~~ 235 (960)
+|+|||++......+ +..+.+++++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|++.
T Consensus 163 ~i~DLL~~~~~~~~~------~~~~~~~~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~----- 231 (344)
T 3dc4_A 163 KPFDLLGSTPHMPMV------AARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK----- 231 (344)
T ss_dssp CEEETTSSCTTSBCC------SSTTTCSCCEECSSHHHHHHHHHHHHHTCC----------CCEEEEEEEEEECS-----
T ss_pred eeEEccCCCCCCccc------cccccCceecccCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEec-----
Confidence 999999876532211 223568999999999999999999999999999999999999999999999752
Q ss_pred CCCCceeEEEEEEEEEcCCCcccccccccccccccccccccchHHHHHHHHHHhcCCCCcccCCCCcccccccCCCCCCc
Q 002140 236 GKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNA 315 (960)
Q Consensus 236 ~~~~~~~~~SkL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPYRDSKLTrLLqdSLGGNs 315 (960)
...|+|+|||||||||+.++++.|.+++|+.+||+||++||+||.+|+.++ .||||||||||+||||+|||||
T Consensus 232 ------~~~skl~lVDLAGSEr~~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~~-~hiPyRdSkLT~lLqdsLgGns 304 (344)
T 3dc4_A 232 ------THHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGH-TVIPYRDSVLTTVLQASLTAQS 304 (344)
T ss_dssp ------SCEEEEEEEECCCCCCC-------------CCSCCHHHHHHHHHHHHHTTC-SSCCGGGSHHHHHTTTTSSTTC
T ss_pred ------CcEEEEEEEECCCCccccccccccchhHHHHHHhHhHHHHHHHHHHHhccC-CcCCccccHHHHHHHHHhCCCC
Confidence 246899999999999999999999999999999999999999999999864 5999999999999999999999
Q ss_pred ccceEecCCCCcchHHHHHHHHHHHHHhhcccccce
Q 002140 316 RTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQ 351 (960)
Q Consensus 316 kT~mI~tISPs~~~~eETlsTLrFAsrAK~Ikn~~~ 351 (960)
+|+|||||||+..+++||++||+||+||++....|.
T Consensus 305 kt~mIa~isP~~~~~~ETlsTL~fA~ra~~~~~~~~ 340 (344)
T 3dc4_A 305 YLTFLACISPHQCDLSETLSTLRFGTSAKAAALEHH 340 (344)
T ss_dssp EEEEEEEECCCGGGHHHHHHHHHHHHHHHHHTTTC-
T ss_pred EEEEEEEeCCchhhHHHHHHHHHHHHHHhhcCCCCC
Confidence 999999999999999999999999999999876654
No 27
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.2e-78 Score=681.20 Aligned_cols=321 Identities=32% Similarity=0.485 Sum_probs=264.9
Q ss_pred CCceEEEEecCCCCchhhhcCCCcceEEe--CC----cEEEeccCCCCCCCCCceeecceeeCCCCChHHHHhhcHHHHH
Q 002140 22 EEKILVLVRLRPLSEKEITADEATDWECI--ND----TTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIA 95 (960)
Q Consensus 22 ~~~I~V~VRVRPl~~~E~~~~~~~~~~~~--~~----~ti~~~~~~~~~s~~~~~F~FD~VF~~~atQeeVye~~v~plV 95 (960)
.++|+|+|||||+.+.+... +...+.+. ++ .++..... ......+.|+||+||+++++|++||+. +.|+|
T Consensus 58 kgnIrV~vRvRP~~~~~e~~-~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~F~FD~VF~~~~~Q~~Vf~~-v~~lv 133 (403)
T 4etp_A 58 RGNIRVYLRIRPALKNLENS-DTSLINVNEFDDNSGVQSMEVTKI--QNTAQVHEFKFDKIFDQQDTNVDVFKE-VGQLV 133 (403)
T ss_dssp HCSEEEEEEECCCCTTTSCS-CCTTEEECCCBTTTTBEEEEEEEC--SSSCEEEEEEESEEECTTCCHHHHHHH-HHHHH
T ss_pred CCCeEEEEEeCCCCCccccc-CCCeeEEeeccCCCCceEEEEecC--CCCcCceEEEcCEEECCCCchHHHHHH-HHHHH
Confidence 36899999999998773222 22222221 11 12332221 122235789999999999999999998 66899
Q ss_pred HHHhCCCCEEEEEeccCCCCCccccC----CCchhhHHHHHHHHHhcc--ccceEEEeeeeeeecchhccccCCCC----
Q 002140 96 LSVVSGINSSIFAYGQTSSGKTYTMT----GITECTVADIFDYIHRHE--ERAFVLKFSAMEIYNEAIRDLLSTDN---- 165 (960)
Q Consensus 96 ~svL~G~N~tIfAYGqTGSGKTyTM~----GIi~ral~dLF~~I~~~~--~~~f~V~vS~lEIYNE~V~DLL~~~~---- 165 (960)
+++++|||+||||||||||||||||+ ||+|+++.+||..+.... ...|.|++||+|||||+|+|||++..
T Consensus 134 ~~~l~G~N~tifAYGqTGSGKTyTM~g~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~ 213 (403)
T 4etp_A 134 QSSLDGYNVAIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKE 213 (403)
T ss_dssp HHHHTTCCEEEEEESCTTSSHHHHHHCTTTSHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEEEETTEEEETTCC------
T ss_pred HHHhCCcceEEEEECCCCCCCceEeCCCCCccchhHHHHHHHHHHhhhccCceEEEEEEEEEEecceeeEccCCcccccc
Confidence 99999999999999999999999995 799999999999998643 45899999999999999999998753
Q ss_pred -----CCceeeeCC-CCCEEeccceEEEeCCHHHHHHHHHHHHhhhcccccccCCCCCCceeEEEEEEEeccccccCCCC
Q 002140 166 -----TPLRLLDDP-EKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKEN 239 (960)
Q Consensus 166 -----~~L~I~ed~-~~gv~V~gLte~~V~S~ee~~~LL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~e~~~~~~ 239 (960)
..+.+++++ .++++|.|++++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|.+... ..
T Consensus 214 ~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~-----~~ 288 (403)
T 4etp_A 214 DTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNA-----KT 288 (403)
T ss_dssp --CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHHC--C----CHHHHHHHTSEEEEEEEEEEEET-----TT
T ss_pred ccccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHHHHHHHHhcccccccCCcccCCcccEEEEEEEEeec-----CC
Confidence 245666665 4679999999999999999999999999999999999999999999999999987543 22
Q ss_pred ceeEEEEEEEEEcCCCcccccccccccccccccccccchHHHHHHHHHHhcCC--CCcccCCCCcccccccCCCCCCccc
Q 002140 240 STTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGR--NGHINYRDSKLTRMLQPCLGGNART 317 (960)
Q Consensus 240 ~~~~~SkL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k--~~hIPYRDSKLTrLLqdSLGGNskT 317 (960)
.....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.+. ..||||||||||+||||+|||||+|
T Consensus 289 ~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~LLqdsLgGnskt 368 (403)
T 4etp_A 289 GAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKT 368 (403)
T ss_dssp CCEEEEEEEEEECCCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTTSCCCGGGSHHHHHTGGGTSTTCEE
T ss_pred CCeeEEEEEEEECCCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccchHHHHHHHhcCCCceE
Confidence 33567999999999999999999999999999999999999999999998753 3599999999999999999999999
Q ss_pred ceEecCCCCcchHHHHHHHHHHHHHhhcccccce
Q 002140 318 AIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQ 351 (960)
Q Consensus 318 ~mI~tISPs~~~~eETlsTLrFAsrAK~Ikn~~~ 351 (960)
+|||||||+..+++||++||+||+|++.|+..++
T Consensus 369 ~mi~~vsP~~~~~~ETl~TL~fA~rv~~~~~~~r 402 (403)
T 4etp_A 369 LMFVNISPSSSHINETLNSLRFASKVNSTRLVSR 402 (403)
T ss_dssp EEEEEECCSGGGHHHHHHHHHHHHHHCCC-----
T ss_pred EEEEEeCCchhhHHHHHHHHHHHHHHhhcccCCC
Confidence 9999999999999999999999999999988764
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=100.00 E-value=1.3e-73 Score=687.85 Aligned_cols=338 Identities=29% Similarity=0.448 Sum_probs=257.8
Q ss_pred CcchhhHhhhhhhhcCCCCCCCceEEEEecC-----CCCchhhhcCCCcceEEe------CCcEEEeccCCCCCCCCCce
Q 002140 2 GAVGAEELMKMEKMQAPSAREEKILVLVRLR-----PLSEKEITADEATDWECI------NDTTILYRNTLREGSTFPSA 70 (960)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~I~V~VRVR-----Pl~~~E~~~~~~~~~~~~------~~~ti~~~~~~~~~s~~~~~ 70 (960)
|....|+.|+-.+.+.. .--++++|||||| |+...+....+...+... ....|++..+. .+....+.
T Consensus 354 G~~tpeeAL~~Aq~~~~-~il~~~rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 431 (715)
T 4h1g_A 354 GRQTVDAALAAAQTNAA-ALKGNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNI-NNNFSNLR 431 (715)
T ss_dssp TSSCHHHHHHHHHHHHS-SSSCSEEEEEEECCCC-------------BCEEECCC-------CEEEEEEEE-TTEEEEEE
T ss_pred CCCCHHHHHHHHHHHHH-HHHhcCeEEEEEeccccccccccccccccceeccCCCCCCCCCCCeEEEcCCC-CCCCCCeE
Confidence 33445555553332222 3346899999999 444433332223323222 22344444332 23344679
Q ss_pred eecceeeCCCCChHHHHhhcHHHHHHHHhCCCCEEEEEeccCCCCCccccC----CCchhhHHHHHHHHHhcc--ccceE
Q 002140 71 YTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT----GITECTVADIFDYIHRHE--ERAFV 144 (960)
Q Consensus 71 F~FD~VF~~~atQeeVye~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~----GIi~ral~dLF~~I~~~~--~~~f~ 144 (960)
|+||+||+++++|++||+.+ .|+|+++++|||+||||||||||||||||. ||+||++++||+.|+... ...|.
T Consensus 432 f~fd~vf~~~~~q~~v~~~~-~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~~~Giipr~~~~lf~~~~~~~~~~~~~~ 510 (715)
T 4h1g_A 432 FLFDKIFEREQSNDLVFEEL-SQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHPTNGMIPLSLKKIFNDIEELKEKGWSYT 510 (715)
T ss_dssp EECSEEECSSCCHHHHGGGT-HHHHHHHHTTCCEEEEEESSTTSSHHHHHHCTTTSHHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred EEeceEeCCCCCHHHHHHHH-HHHHHHHhCCceEEEEccCCCCCchhhccCCCCCCcHHHHHHHHHHHHHHhhcCCceEE
Confidence 99999999999999999875 599999999999999999999999999996 699999999999998644 45799
Q ss_pred EEeeeeeeecchhccccCCCC---CCceeeeCC-CCCEEeccceEEEeCCHHHHHHHHHHHHhhhcccccccCCCCCCce
Q 002140 145 LKFSAMEIYNEAIRDLLSTDN---TPLRLLDDP-EKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSH 220 (960)
Q Consensus 145 V~vS~lEIYNE~V~DLL~~~~---~~L~I~ed~-~~gv~V~gLte~~V~S~ee~~~LL~~g~~~R~~~~T~~N~~SSRSH 220 (960)
|+|||+|||||+|+|||++.. ..+.+++++ .++++|.||+++.|.+.++++.+|..|.++|++++|.+|..|||||
T Consensus 511 v~~s~~Eiyne~i~DLl~~~~~~~~~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~~~~~~g~~~r~~~~t~~n~~ssRSH 590 (715)
T 4h1g_A 511 VRGKFIEIYNEAIVDLLNPKIDPNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSH 590 (715)
T ss_dssp EEEEEEEEETTEEEESSSCCCCTTCCCCEEEETTTTEEEETTCCCEECSCHHHHHHHHHHHHCC----------CGGGSE
T ss_pred EEEEEEEEECCEEEECCCCCCCCCCcceeEEecCCCCEEEeCCEEEEcCCHHHHHHHHHHHHhccCcccccccCcccccc
Confidence 999999999999999998753 356666555 4559999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEeccccccCCCCceeEEEEEEEEEcCCCcccccccccccccccccccccchHHHHHHHHHHhcCCCCcccCCC
Q 002140 221 QIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRD 300 (960)
Q Consensus 221 ~IftL~Ie~~~~e~~~~~~~~~~~SkL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPYRD 300 (960)
+||+|+|++... .......|+|+|||||||||..++++.|.|++|+.+||+||++||+||.+|+.++..||||||
T Consensus 591 ~i~~i~~~~~~~-----~~~~~~~~~l~lvDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~al~~~~~~~vpyR~ 665 (715)
T 4h1g_A 591 SIFIIDLQGYNS-----LTKESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRN 665 (715)
T ss_dssp EEEEEEEEEEET-----TTCCEEEEEEEEEECCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHCSCCCCCGGG
T ss_pred EEEEEEEEEEec-----CCCCEeEEEEEEEeCCCcccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCcc
Confidence 999999987543 233457899999999999999999999999999999999999999999999987778999999
Q ss_pred CcccccccCCCCCCcccceEecCCCCcchHHHHHHHHHHHHHhhccc
Q 002140 301 SKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVT 347 (960)
Q Consensus 301 SKLTrLLqdSLGGNskT~mI~tISPs~~~~eETlsTLrFAsrAK~Ik 347 (960)
|||||||||+|||||+|+|||||||+..+++||++||+||+|||+|+
T Consensus 666 SkLT~lL~~slggn~~t~~i~~isp~~~~~~et~~tL~fa~r~~~i~ 712 (715)
T 4h1g_A 666 SKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATKVNNTR 712 (715)
T ss_dssp CHHHHHTGGGTSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHCC--
T ss_pred CHHHHHHHhhcCCCceEEEEEEECCChhhHHHHHHHHHHHHHhccce
Confidence 99999999999999999999999999999999999999999999996
No 29
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.96 E-value=5.4e-30 Score=237.71 Aligned_cols=99 Identities=38% Similarity=0.571 Sum_probs=95.3
Q ss_pred ccccccchHHHHHHHHHHhcCCCCcccCCCCcccccccCCCCCCcccceEecCCCCcchHHHHHHHHHHHHHhhcccccc
Q 002140 271 GCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKA 350 (960)
Q Consensus 271 g~~INkSL~aLg~VI~aLs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mI~tISPs~~~~eETlsTLrFAsrAK~Ikn~~ 350 (960)
+.+||+||++||+||.+|+.++..||||||||||+||||+||||++|+|||||||+..+++||++||+||+||+.|+|+|
T Consensus 1 a~~IN~SL~~Lg~vI~aL~~~~~~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~fA~rak~i~~~~ 80 (100)
T 2kin_B 1 AKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTV 80 (100)
T ss_dssp CCBSSHHHHHHHHHHHHHHHTCCSSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCcchHHHHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHHHHHHHhccCcc
Confidence 46899999999999999998877899999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCHHHHHHHHHHHH
Q 002140 351 QVNVVMSDKALVKHLQKEL 369 (960)
Q Consensus 351 ~vN~~~s~~~lik~Lq~Ei 369 (960)
.+|+..+...++++|++|+
T Consensus 81 ~~n~~~~~~~l~~~~~~e~ 99 (100)
T 2kin_B 81 SVNLELTAEEWKKKYEKEK 99 (100)
T ss_dssp CCEEECCHHHHHHHHHHHH
T ss_pred eeccCCCHHHHHHHHHHhh
Confidence 9999999999999998886
No 30
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.95 E-value=3.2e-28 Score=232.12 Aligned_cols=99 Identities=38% Similarity=0.586 Sum_probs=92.8
Q ss_pred ccchHHHHHHHHHHhcCCCCcccCCCCcccccccCCCCCCcccceEecCCCCcchHHHHHHHHHHHHHhhcccccceecc
Q 002140 275 NRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNV 354 (960)
Q Consensus 275 NkSL~aLg~VI~aLs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mI~tISPs~~~~eETlsTLrFAsrAK~Ikn~~~vN~ 354 (960)
|+||++||+||.+|+.++..||||||||||+||||+|||||+|+|||||||+..+++||++||+||+|||.|+|+|.+|.
T Consensus 1 N~SL~~Lg~vi~aL~~~~~~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~~n~ 80 (117)
T 3kin_B 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNL 80 (117)
T ss_dssp CCHHHHHHHHHHHHHHSCCSSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEECCCB
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCceecC
Confidence 89999999999999998778999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHHHHH
Q 002140 355 VMSDKALVKHLQKELARLE 373 (960)
Q Consensus 355 ~~s~~~lik~Lq~Ei~~Le 373 (960)
..+.+.+++++++++.+++
T Consensus 81 ~~~~~~l~~~~~~e~~~~~ 99 (117)
T 3kin_B 81 ELTAEEWKKKYEKEKEKNK 99 (117)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHH
Confidence 9999888887777665443
No 31
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=99.87 E-value=3.2e-23 Score=221.90 Aligned_cols=263 Identities=13% Similarity=0.117 Sum_probs=169.7
Q ss_pred CceEEEEecCCCC-chhhhcCCCcceEEeCCcEEEeccCCCCCCCCCceeecceeeCCCCChH--HHHhhcHHHHHHHHh
Q 002140 23 EKILVLVRLRPLS-EKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFDRVFWGDCSTT--QVYEDGAKEIALSVV 99 (960)
Q Consensus 23 ~~I~V~VRVRPl~-~~E~~~~~~~~~~~~~~~ti~~~~~~~~~s~~~~~F~FD~VF~~~atQe--eVye~~v~plV~svL 99 (960)
++|||||||||.. + ..+.+...+ ..|.. +. ..+.|.||+||++.+.|+ +||++ +.++|+++|
T Consensus 24 GnIRVFcrvrp~~~p------~~~~v~y~~-~~I~v-~~------~~k~f~FDRVf~p~s~Qe~~~vf~E-~~~~i~scL 88 (298)
T 2o0a_A 24 GTMRCYAYVMEQNLP------ENLLFDYEN-GVITQ-GL------SEHVYKFNRVIPHLKVSEDKFFTQE-YSVYHDMCL 88 (298)
T ss_dssp TCCEEEEEECGGGSC------TTEEEETTT-TEEEE-TT------TCCEEECSEEEETTTSCHHHHHHHT-THHHHHHHH
T ss_pred CceEEEEEeccccCC------ccceeecCc-cceee-cC------CCceEEeeeEECccccccHHHHHHH-HHHHHHHHH
Confidence 7899999999953 2 111122222 33443 22 126899999999999999 99999 999999999
Q ss_pred C-CCCEEEEEeccCCCCCccccCCCchhhHHHHHHHHHh-ccccceEEEeeeeeee-cchhccccCCC--CCCceeeeCC
Q 002140 100 S-GINSSIFAYGQTSSGKTYTMTGITECTVADIFDYIHR-HEERAFVLKFSAMEIY-NEAIRDLLSTD--NTPLRLLDDP 174 (960)
Q Consensus 100 ~-G~N~tIfAYGqTGSGKTyTM~GIi~ral~dLF~~I~~-~~~~~f~V~vS~lEIY-NE~V~DLL~~~--~~~L~I~ed~ 174 (960)
+ |||+||||||||||||| |+++..+|...+. .. ..|.+.++|+||| ||.++|||... +..+.|+-+.
T Consensus 89 d~GyNvcIfSyGQTGsGKT-------~ral~q~f~~~~~~~~-~~Y~~tlq~veLy~Ne~~~DLL~~~~~~~k~eIk~~~ 160 (298)
T 2o0a_A 89 NQKKNFNLISLSTTPHGSL-------RESLIKFLAEKDTIYQ-KQYVITLQFVFLSDDEFSQDMLLDYSHNDKDSIKLKF 160 (298)
T ss_dssp HTTCCEEEEEECSSCCHHH-------HHHHHHHHHSTTSHHH-HHEEEEEEEEEEECC-CEEETTSCCC------CEEEE
T ss_pred hCCCceEEEEECCCCCCcc-------HHHHHHHHHHhhhhcc-cceEEEEEEEEEecCCchHHhcCCCCCCCcceEEecC
Confidence 9 99999999999999999 9999999987654 33 7899999999999 99999999632 2356777778
Q ss_pred CCCEEeccceEEEeCC-HHHHHHHHHHHHhhhcccccccCCCCCCceeEEEEEEEeccccccCCCCceeEEEEEEEEEcC
Q 002140 175 EKGVVVEKVTEEILKD-WNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLA 253 (960)
Q Consensus 175 ~~gv~V~gLte~~V~S-~ee~~~LL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ie~~~~e~~~~~~~~~~~SkL~fVDLA 253 (960)
.++++|.|++.+.|.+ .+|+..++..+..- .+|+ +.-.|+.+.+....... .++.....--++|+.+.
T Consensus 161 ~g~~iv~~s~~i~V~~~~edv~~~~~~~~~~------~~~~---~gi~i~k~~~~~~~~~~--~~~~~~~~~d~yf~e~~ 229 (298)
T 2o0a_A 161 EKHSISLDSKLVIIENGLEDLPLNFSCDEHP------NLPH---SGMGIIKVQFFPRDSKS--DGNNDPVPVDFYFIELN 229 (298)
T ss_dssp CSSCEEEESCCEEESSGGGGSCTTTTCC----------------CEEEEEEEEEEESCC---------CCCEEEEEEEEC
T ss_pred CCCEEecccEEEEccccHHHHHHHhhccccc------ccCC---CCceEEEEEEecCcccc--cccCCCCceEEEEEEeC
Confidence 8999999999999999 89888887333221 2222 23556666665421111 11111123347777764
Q ss_pred CCcccccccccccccccccccccchHHHHHHHHHHhcCCCCcccCCCCcccccccCCCCCCcccceEecCCCCcchHHHH
Q 002140 254 GSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQT 333 (960)
Q Consensus 254 GSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mI~tISPs~~~~eET 333 (960)
-.. +...|.+ ++..++ +-.|+++-+|+.-|- ..+-++++++.-.....
T Consensus 230 ~~~--------------------~~~~l~~---~~~~~~-----~~~spi~~il~~ll~-~tks~~~~~l~~~~~~~--- 277 (298)
T 2o0a_A 230 NLK--------------------SIEQFDK---SIFKKE-----SCETPIALVLKKLIS-DTKSFFLLNLNDSKNVN--- 277 (298)
T ss_dssp SHH--------------------HHHHHHH---HHHTC------CCCSHHHHHHHHHHH-HSBCEEEEEECCGGGHH---
T ss_pred CHH--------------------HHHHHHh---hccccc-----ccCCcHHHHHHHHHh-cCcceEEEEecCCCchh---
Confidence 221 1222333 222222 234566777765543 35778999987654332
Q ss_pred HHHHHHHHHhhccccccee
Q 002140 334 RNTLLFACCAKEVTTKAQV 352 (960)
Q Consensus 334 lsTLrFAsrAK~Ikn~~~v 352 (960)
.-|..+++..+++|.-+.
T Consensus 278 -~lL~~s~~i~~~~~~~~~ 295 (298)
T 2o0a_A 278 -KLLTISEEVQTQLCKRKK 295 (298)
T ss_dssp -HHHHHHHHHHHHTC----
T ss_pred -HHHHHHHHhhcccCcccc
Confidence 367777777777765443
No 32
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.79 E-value=0.025 Score=55.63 Aligned_cols=52 Identities=12% Similarity=0.059 Sum_probs=37.2
Q ss_pred eeecceeeCCCCChHHHHhhcHHHHHHHHhCCCCEEEEEeccCCCCCccccCC
Q 002140 70 AYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 70 ~F~FD~VF~~~atQeeVye~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~G 122 (960)
.++||.....+..|+.+++. +..++.++--.-...++-||++|+|||+.+..
T Consensus 6 ~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~ 57 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLT-IRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVA 57 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHH-HHHHHHSCCGGGCCEEEECCSSSSSHHHHHHH
T ss_pred hCccccccCCCHHHHHHHHH-HHHHHHhccccCCCEEEEECCCCCCHHHHHHH
Confidence 46888876655567778755 66666665433345678899999999998743
No 33
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=91.24 E-value=0.072 Score=53.04 Aligned_cols=52 Identities=17% Similarity=0.232 Sum_probs=35.3
Q ss_pred eeecceeeCCCCChHHHHhhcHHHHHHHHhCCCC-EEEEEeccCCCCCccccCC
Q 002140 70 AYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGIN-SSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 70 ~F~FD~VF~~~atQeeVye~~v~plV~svL~G~N-~tIfAYGqTGSGKTyTM~G 122 (960)
.++||.+...+..+..+++. +..++...-.+.. ..|+-||++|+|||+.+..
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~ 73 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRF-AERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAA 73 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHH-HHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHH
T ss_pred cCCHhhccCCChhHHHHHHH-HHHHHHHhhhccCCCeEEEECCCCCCHHHHHHH
Confidence 46788776655456667764 5555555433332 6788999999999998643
No 34
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=88.99 E-value=0.13 Score=55.93 Aligned_cols=52 Identities=13% Similarity=0.323 Sum_probs=35.1
Q ss_pred eecceeeCCCCChHHHHhhcHHHHHHHHhCCCCEEEEEeccCCCCCccccCCC
Q 002140 71 YTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGI 123 (960)
Q Consensus 71 F~FD~VF~~~atQeeVye~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~GI 123 (960)
++||.+......+..++. .+..++...-.+....|+-||++|+||||.+.++
T Consensus 121 ~tfd~f~~~~~~~~~~~~-~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~ai 172 (308)
T 2qgz_A 121 IHLSDIDVNNASRMEAFS-AILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAM 172 (308)
T ss_dssp CCGGGSCCCSHHHHHHHH-HHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHH
T ss_pred CCHhhCcCCChHHHHHHH-HHHHHHHhccccCCceEEEECCCCCCHHHHHHHH
Confidence 677776544434555665 3556666554444567888999999999998653
No 35
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=81.74 E-value=0.52 Score=50.50 Aligned_cols=48 Identities=15% Similarity=0.147 Sum_probs=30.4
Q ss_pred cceeeCCCCChHHHHhhcHHHHHHHHhCCCC----EEEEEeccCCCCCcccc
Q 002140 73 FDRVFWGDCSTTQVYEDGAKEIALSVVSGIN----SSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 73 FD~VF~~~atQeeVye~~v~plV~svL~G~N----~tIfAYGqTGSGKTyTM 120 (960)
||..|+..---..+.+.++..++...+...+ ..|+-||++|+|||+..
T Consensus 2 ~~~~~~~~y~~~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 2 LDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp CCCEETTEECCHHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHH
T ss_pred cccccCcccCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4444443333355666667777766654222 36788999999999865
No 36
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=81.64 E-value=0.63 Score=44.32 Aligned_cols=32 Identities=16% Similarity=0.214 Sum_probs=23.5
Q ss_pred HHHHHHHHhCCCCEEEEEeccCCCCCccccCC
Q 002140 91 AKEIALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 91 v~plV~svL~G~N~tIfAYGqTGSGKTyTM~G 122 (960)
...++..+..+....|+-||++|+|||+.+..
T Consensus 31 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~ 62 (195)
T 1jbk_A 31 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEG 62 (195)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSCHHHHHHH
T ss_pred HHHHHHHHhcCCCCceEEECCCCCCHHHHHHH
Confidence 34445555556667789999999999998743
No 37
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=80.51 E-value=11 Score=41.50 Aligned_cols=119 Identities=10% Similarity=0.102 Sum_probs=79.2
Q ss_pred CCceEEEEecCCCCchhhhcCCCcceEEe-CCcEEEeccCCCCCCCCCceeecceeeCCCC-ChHHHHhhcHHHHHHHHh
Q 002140 22 EEKILVLVRLRPLSEKEITADEATDWECI-NDTTILYRNTLREGSTFPSAYTFDRVFWGDC-STTQVYEDGAKEIALSVV 99 (960)
Q Consensus 22 ~~~I~V~VRVRPl~~~E~~~~~~~~~~~~-~~~ti~~~~~~~~~s~~~~~F~FD~VF~~~a-tQeeVye~~v~plV~svL 99 (960)
.|.||+|+=+-+-. -+..+.+. .+.+|.... ....|.|++|++... +-.+++..-.+..++-++
T Consensus 58 KG~IRcFAYi~~~~-------~p~~~~idY~~~~It~~~-------~~~~y~FnRiIp~~~~~e~~~l~qE~q~y~DmcL 123 (333)
T 4etp_B 58 KGTMRVYAYVMEQN-------LPENLLFDYENGVITQGL-------SEHVYKFNRVIPHLKVSEDCFFTQEYSVYHDMAL 123 (333)
T ss_dssp HTCCEEEEEECCSS-------CCSSCEEETTTTEEEC---------CCCEEECSEEEETTTCCHHHHHHHTTHHHHHHHH
T ss_pred cCcEEEEEEECccc-------CCccEEEecccceEeecC-------CcceEEEeeeechhhcchHHHHHHHHHHHHHHHH
Confidence 46789998876621 12233333 234554111 246999999997765 344455555999999999
Q ss_pred -CCCCEEEEEeccCCCCCccccCCCchhhHHHHHHHHHhc---cccceEEEeeeeeeecch-hccccCCC
Q 002140 100 -SGINSSIFAYGQTSSGKTYTMTGITECTVADIFDYIHRH---EERAFVLKFSAMEIYNEA-IRDLLSTD 164 (960)
Q Consensus 100 -~G~N~tIfAYGqTGSGKTyTM~GIi~ral~dLF~~I~~~---~~~~f~V~vS~lEIYNE~-V~DLL~~~ 164 (960)
.+.|+.||..|..- .+..-..++..+... -...|.+.+-|+.+-++. ..|||.+.
T Consensus 124 ~~~~NfslIsis~~~----------w~~Lr~~lL~fi~~k~~~Y~~~y~i~lQ~V~Lse~~~S~DlL~~~ 183 (333)
T 4etp_B 124 NQKKNFNLISLSTTP----------HGSLRESLIKFLAEKDTIYQKQYVITLQFVFLSDDEFSQDMLLDY 183 (333)
T ss_dssp HTTCCEEEEEEESSC----------CCHHHHHHHHHHHSTTCHHHHHEEEEEEEEECCSSSCCEESSCC-
T ss_pred ccCCCeeEEEecCCC----------cHHHHHHHHHHHHhcccccccceEEEEEEEEEcCCCchhhhhccc
Confidence 89999999999761 223445566666654 235788899998888776 79999775
No 38
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.13 E-value=0.76 Score=52.69 Aligned_cols=51 Identities=20% Similarity=0.178 Sum_probs=36.5
Q ss_pred eeecceeeCCCCChHHHHhhcHHHHHH-HHhC--C--CCEEEEEeccCCCCCcccc
Q 002140 70 AYTFDRVFWGDCSTTQVYEDGAKEIAL-SVVS--G--INSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 70 ~F~FD~VF~~~atQeeVye~~v~plV~-svL~--G--~N~tIfAYGqTGSGKTyTM 120 (960)
.-+||.|-+-+.--+++.+.+..|+.. ..+. | .--.|+-||+.|+|||++.
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHH
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHH
Confidence 457888888776666677777777753 2332 3 2356889999999999876
No 39
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=79.56 E-value=0.6 Score=48.41 Aligned_cols=51 Identities=16% Similarity=0.188 Sum_probs=32.5
Q ss_pred eeecceeeCCCCChHHHHhhcHHHHH-----HHHhCCCCEEEEEeccCCCCCccccC
Q 002140 70 AYTFDRVFWGDCSTTQVYEDGAKEIA-----LSVVSGINSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 70 ~F~FD~VF~~~atQeeVye~~v~plV-----~svL~G~N~tIfAYGqTGSGKTyTM~ 121 (960)
.+.||.+.+.+...+.+.+. +..+. ..+-......|+-||++|+|||+.+.
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEI-VDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHH-HHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHH-HHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHH
Confidence 57899999887666665543 22211 11111223458899999999999864
No 40
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=79.55 E-value=0.56 Score=48.76 Aligned_cols=45 Identities=18% Similarity=0.220 Sum_probs=21.7
Q ss_pred eeecceeeCCCCChHHHHhhcHHHHHHHHhCCCCEEEEEeccCCCCCcccc
Q 002140 70 AYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 70 ~F~FD~VF~~~atQeeVye~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
.|+||.+.+.+..-..+.+ .+..+.. .+..|+-||++|+|||+..
T Consensus 2 ~~~f~~~ig~~~~~~~~~~-----~~~~~~~-~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 2 AEYKDNLLGEANSFLEVLE-----QVSHLAP-LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp --------CCCHHHHHHHH-----HHHHHTT-SCSCEEEECCTTSCHHHHH
T ss_pred CcccccceeCCHHHHHHHH-----HHHHHhC-CCCCEEEECCCCCcHHHHH
Confidence 4789998865433333322 2223322 3456788999999999875
No 41
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=78.89 E-value=0.73 Score=43.99 Aligned_cols=31 Identities=13% Similarity=0.154 Sum_probs=23.0
Q ss_pred HHHHHHHHhCCCCEEEEEeccCCCCCccccC
Q 002140 91 AKEIALSVVSGINSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 91 v~plV~svL~G~N~tIfAYGqTGSGKTyTM~ 121 (960)
...++..+..+....|+-||++|+|||+.+.
T Consensus 31 ~~~l~~~l~~~~~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 31 IRRAIQILSRRTKNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp HHHHHHHHTSSSSCEEEEESCGGGCHHHHHH
T ss_pred HHHHHHHHhCCCCCceEEECCCCCCHHHHHH
Confidence 3345555556667788999999999999764
No 42
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=78.32 E-value=0.98 Score=45.10 Aligned_cols=48 Identities=17% Similarity=0.248 Sum_probs=28.6
Q ss_pred eeecceeeCCCCChHHHHhhcHHHHHHHHhCCCCEEEEEeccCCCCCccccCC
Q 002140 70 AYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 70 ~F~FD~VF~~~atQeeVye~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~G 122 (960)
.++||.+++.. .+..++.. +..+ +..+....|+-||++|+|||+.+..
T Consensus 24 ~~~~~~~~~~~-~~~~~~~~-l~~~---~~~~~~~~~ll~G~~G~GKT~la~~ 71 (242)
T 3bos_A 24 DETFTSYYPAA-GNDELIGA-LKSA---ASGDGVQAIYLWGPVKSGRTHLIHA 71 (242)
T ss_dssp TCSTTTSCC---CCHHHHHH-HHHH---HHTCSCSEEEEECSTTSSHHHHHHH
T ss_pred CCChhhccCCC-CCHHHHHH-HHHH---HhCCCCCeEEEECCCCCCHHHHHHH
Confidence 35777666532 33444443 2222 2233566788999999999998643
No 43
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=78.22 E-value=0.99 Score=48.38 Aligned_cols=51 Identities=27% Similarity=0.486 Sum_probs=31.5
Q ss_pred ceeecceeeCCCCChHHHHhhcHHHHHHHHhCCCCEEEEEeccCCCCCccccCC
Q 002140 69 SAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 69 ~~F~FD~VF~~~atQeeVye~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~G 122 (960)
..|+||.+.... .+...+.. +..++..-- +....++-||++|+|||+.+..
T Consensus 6 ~~~~f~~fv~g~-~~~~a~~~-~~~~~~~~~-~~~~~lll~G~~GtGKT~la~~ 56 (324)
T 1l8q_A 6 PKYTLENFIVGE-GNRLAYEV-VKEALENLG-SLYNPIFIYGSVGTGKTHLLQA 56 (324)
T ss_dssp TTCCSSSCCCCT-TTHHHHHH-HHHHHHTTT-TSCSSEEEECSSSSSHHHHHHH
T ss_pred CCCCcccCCCCC-cHHHHHHH-HHHHHhCcC-CCCCeEEEECCCCCcHHHHHHH
Confidence 468998876322 34445543 444443321 1234688899999999998754
No 44
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=78.05 E-value=0.73 Score=48.17 Aligned_cols=52 Identities=15% Similarity=0.125 Sum_probs=32.4
Q ss_pred eeecceeeCCCCChHHHHhhcHHHHHH-----HHhCCCCEEEEEeccCCCCCccccC
Q 002140 70 AYTFDRVFWGDCSTTQVYEDGAKEIAL-----SVVSGINSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 70 ~F~FD~VF~~~atQeeVye~~v~plV~-----svL~G~N~tIfAYGqTGSGKTyTM~ 121 (960)
.++||.+.+.+..-+.+.+.+..++.. ..--.....|+-||++|+|||+.+.
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 578999887655444454444333221 1111334568899999999998763
No 45
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.35 E-value=1.5 Score=50.18 Aligned_cols=51 Identities=22% Similarity=0.296 Sum_probs=33.0
Q ss_pred eeecceeeCCCCChHHHHhhcHHHHHH-HHhC--CC--CEEEEEeccCCCCCcccc
Q 002140 70 AYTFDRVFWGDCSTTQVYEDGAKEIAL-SVVS--GI--NSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 70 ~F~FD~VF~~~atQeeVye~~v~plV~-svL~--G~--N~tIfAYGqTGSGKTyTM 120 (960)
.-+||-|-|-+.--+++.+.+..|+.. ..+. |. .-.|+-||+.|+|||+..
T Consensus 168 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 168 DVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp SCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHH
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHH
Confidence 357788877665445555555555543 2222 32 345999999999999876
No 46
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=76.91 E-value=1.2 Score=48.20 Aligned_cols=47 Identities=15% Similarity=0.094 Sum_probs=32.0
Q ss_pred eeecceeeCCCCChHHHHhhcHHHHHHHHhCCCCE--EEEEeccCCCCCccccC
Q 002140 70 AYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINS--SIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 70 ~F~FD~VF~~~atQeeVye~~v~plV~svL~G~N~--tIfAYGqTGSGKTyTM~ 121 (960)
.++||.+.+. +.+... ...++..+..|... .++-||++|+|||+...
T Consensus 40 ~~~~~~ivG~----~~~~~~-l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 40 RQASQGMVGQ----LAARRA-AGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp CSEETTEESC----HHHHHH-HHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHH
T ss_pred CcchhhccCh----HHHHHH-HHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHH
Confidence 4678888764 333332 34455556666654 88999999999998763
No 47
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=76.67 E-value=1.2 Score=46.45 Aligned_cols=22 Identities=27% Similarity=0.194 Sum_probs=18.9
Q ss_pred CCCCEEEEEeccCCCCCccccC
Q 002140 100 SGINSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM~ 121 (960)
......|+-||++|+|||+...
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHH
Confidence 5677889999999999998753
No 48
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=76.49 E-value=0.73 Score=49.38 Aligned_cols=45 Identities=13% Similarity=0.333 Sum_probs=29.5
Q ss_pred ceeecceeeCCCCChHHHHhhcHHHHHHHHhCCCCEEEEEeccCCCCCccccC
Q 002140 69 SAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 69 ~~F~FD~VF~~~atQeeVye~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~ 121 (960)
..|+||.+++.+ .+... +...++.+....|+-||++|+|||+...
T Consensus 19 ~~~~f~~i~G~~----~~~~~----l~~~~~~~~~~~vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 19 PVFPFSAIVGQE----DMKLA----LLLTAVDPGIGGVLVFGDRGTGKSTAVR 63 (350)
T ss_dssp CCCCGGGSCSCH----HHHHH----HHHHHHCGGGCCEEEECCGGGCTTHHHH
T ss_pred CCCCchhccChH----HHHHH----HHHHhhCCCCceEEEECCCCccHHHHHH
Confidence 368899988743 33322 2333444444459999999999998763
No 49
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=76.19 E-value=0.88 Score=48.70 Aligned_cols=52 Identities=13% Similarity=0.084 Sum_probs=32.0
Q ss_pred eeecceeeCCCCChHHHHhhcHHHHHH-----HHhCCCCEEEEEeccCCCCCccccC
Q 002140 70 AYTFDRVFWGDCSTTQVYEDGAKEIAL-----SVVSGINSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 70 ~F~FD~VF~~~atQeeVye~~v~plV~-----svL~G~N~tIfAYGqTGSGKTyTM~ 121 (960)
.++||.|.+.+..-+.+.+.+..|+.. .+--.....|+-||++|+|||+.+.
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHH
Confidence 467888887655444555444433211 1111334568999999999998763
No 50
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=76.19 E-value=0.92 Score=49.87 Aligned_cols=28 Identities=21% Similarity=0.124 Sum_probs=22.2
Q ss_pred HHHHHHhCCCCEEEEEeccCCCCCcccc
Q 002140 93 EIALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 93 plV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
-+-..+-.|...+|+-||++|+|||.++
T Consensus 35 ~L~~~i~~~~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 35 PIYDSLMSSQNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp HHHHHHHTTCCCEEEEECCCSHHHHHHH
T ss_pred HHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 3334445788889999999999999885
No 51
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=75.02 E-value=1 Score=46.50 Aligned_cols=51 Identities=16% Similarity=0.144 Sum_probs=28.7
Q ss_pred eeecceeeCCCCChHHHHhhcHHHHH-HHHhCCC----CEEEEEeccCCCCCccccC
Q 002140 70 AYTFDRVFWGDCSTTQVYEDGAKEIA-LSVVSGI----NSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 70 ~F~FD~VF~~~atQeeVye~~v~plV-~svL~G~----N~tIfAYGqTGSGKTyTM~ 121 (960)
.++||.|.+.+....++- .....+- ..++.++ ...++-||++|+|||+.+.
T Consensus 12 ~~~~~~i~g~~~~~~~l~-~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~ 67 (254)
T 1ixz_A 12 KVTFKDVAGAEEAKEELK-EIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 67 (254)
T ss_dssp SCCGGGCCSCHHHHHHHH-HHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHH
T ss_pred CCCHHHhCCcHHHHHHHH-HHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHH
Confidence 578998887653333322 2122110 0122221 2238999999999999874
No 52
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.70 E-value=1.7 Score=49.36 Aligned_cols=69 Identities=22% Similarity=0.257 Sum_probs=45.9
Q ss_pred eecceeeCCCCChHHHHhhcHHHHHH-HHhC--CC--CEEEEEeccCCCCCccccC-----------------------C
Q 002140 71 YTFDRVFWGDCSTTQVYEDGAKEIAL-SVVS--GI--NSSIFAYGQTSSGKTYTMT-----------------------G 122 (960)
Q Consensus 71 F~FD~VF~~~atQeeVye~~v~plV~-svL~--G~--N~tIfAYGqTGSGKTyTM~-----------------------G 122 (960)
-+||.|-|-+.--+++-+.+.-|+.. .++. |. .-.|+-||+.|+|||+... |
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vG 224 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIG 224 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTT
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccc
Confidence 57788877665556666777776653 2333 32 3468999999999998761 3
Q ss_pred CchhhHHHHHHHHHhcc
Q 002140 123 ITECTVADIFDYIHRHE 139 (960)
Q Consensus 123 Ii~ral~dLF~~I~~~~ 139 (960)
-.+..++.+|.......
T Consensus 225 ese~~vr~lF~~Ar~~a 241 (405)
T 4b4t_J 225 EGSRMVRELFVMAREHA 241 (405)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHhC
Confidence 33456777787766543
No 53
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=71.68 E-value=1.7 Score=43.46 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=19.0
Q ss_pred HHHHHhCCCCEEEEEeccCCCCCccc
Q 002140 94 IALSVVSGINSSIFAYGQTSSGKTYT 119 (960)
Q Consensus 94 lV~svL~G~N~tIfAYGqTGSGKTyT 119 (960)
.+..+++|.| ++..++||||||.+
T Consensus 44 ~i~~~~~~~~--~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 44 AIMPIIEGHD--VLAQAQSGTGKTGT 67 (224)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHhcCCC--EEEECCCCCcHHHH
Confidence 3456678877 67788999999987
No 54
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=71.29 E-value=2 Score=42.36 Aligned_cols=25 Identities=24% Similarity=0.301 Sum_probs=18.3
Q ss_pred HHHHHhCCCCEEEEEeccCCCCCcccc
Q 002140 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 94 lV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
.+..+++|.| ++..++||||||.+.
T Consensus 33 ~i~~~~~~~~--~lv~apTGsGKT~~~ 57 (206)
T 1vec_A 33 SIPIALSGRD--ILARAKNGTGKSGAY 57 (206)
T ss_dssp HHHHHHTTCC--EEEECCSSSTTHHHH
T ss_pred HHHHHccCCC--EEEECCCCCchHHHH
Confidence 3445677877 566789999999654
No 55
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=71.11 E-value=1.8 Score=49.26 Aligned_cols=52 Identities=29% Similarity=0.495 Sum_probs=31.1
Q ss_pred CCceeecceeeCCCCChHHHHhhcHHHHHHHHhCCCCEEEEEeccCCCCCccccCC
Q 002140 67 FPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 67 ~~~~F~FD~VF~~~atQeeVye~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~G 122 (960)
....|+||...... .+...+.. +..++.. .|....++-||++|+|||+.+..
T Consensus 98 l~~~~tfd~fv~g~-~n~~a~~~-~~~~a~~--~~~~~~lll~Gp~G~GKTtLa~a 149 (440)
T 2z4s_A 98 LNPDYTFENFVVGP-GNSFAYHA-ALEVAKH--PGRYNPLFIYGGVGLGKTHLLQS 149 (440)
T ss_dssp CCTTCSGGGCCCCT-TTHHHHHH-HHHHHHS--TTSSCCEEEECSSSSSHHHHHHH
T ss_pred CCCCCChhhcCCCC-chHHHHHH-HHHHHhC--CCCCCeEEEECCCCCCHHHHHHH
Confidence 34578998765322 23334432 3333332 23134688999999999998754
No 56
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=70.85 E-value=1 Score=47.41 Aligned_cols=51 Identities=12% Similarity=0.145 Sum_probs=31.9
Q ss_pred eeecceeeCCCCChHHHHhhcHHHHHH-HHhC---CCCEEEEEeccCCCCCcccc
Q 002140 70 AYTFDRVFWGDCSTTQVYEDGAKEIAL-SVVS---GINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 70 ~F~FD~VF~~~atQeeVye~~v~plV~-svL~---G~N~tIfAYGqTGSGKTyTM 120 (960)
..+||.+.+.+..-+.+.+.+..|+.. .++. .....|+-||++|+|||+.+
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 457888887654444444444444331 1112 23557899999999999876
No 57
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=70.36 E-value=2 Score=42.36 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=18.1
Q ss_pred HHHHhCCCCEEEEEeccCCCCCcccc
Q 002140 95 ALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 95 V~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
+..+++|.| ++..++||||||.+.
T Consensus 32 i~~~~~~~~--~li~~~TGsGKT~~~ 55 (207)
T 2gxq_A 32 LPLALEGKD--LIGQARTGTGKTLAF 55 (207)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHcCCCC--EEEECCCCChHHHHH
Confidence 445677877 566789999999863
No 58
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=70.09 E-value=2.2 Score=41.20 Aligned_cols=19 Identities=21% Similarity=0.553 Sum_probs=15.4
Q ss_pred EEEEEeccCCCCCccccCC
Q 002140 104 SSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 104 ~tIfAYGqTGSGKTyTM~G 122 (960)
..++-||++|+|||+.+..
T Consensus 37 ~~~~l~G~~G~GKTtL~~~ 55 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQA 55 (149)
T ss_dssp SEEEEESSSTTTTCHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 3566799999999998754
No 59
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=69.72 E-value=1 Score=49.61 Aligned_cols=52 Identities=13% Similarity=0.162 Sum_probs=31.2
Q ss_pred eeecceeeCCCCChHHHHhhcHHHHHHHH----hCCCCEEEEEeccCCCCCccccC
Q 002140 70 AYTFDRVFWGDCSTTQVYEDGAKEIALSV----VSGINSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 70 ~F~FD~VF~~~atQeeVye~~v~plV~sv----L~G~N~tIfAYGqTGSGKTyTM~ 121 (960)
..+||.+.+.+..-+.+.+.+..|+...- +.+....|+-||++|+|||+.+.
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHH
Confidence 35677777654433444444333332111 23445678999999999998763
No 60
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=68.91 E-value=1.9 Score=41.94 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=16.8
Q ss_pred CCCCEEEEEeccCCCCCccccC
Q 002140 100 SGINSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM~ 121 (960)
.+....++-||++|+|||+.+.
T Consensus 35 ~~~~~~~ll~G~~G~GKT~l~~ 56 (226)
T 2chg_A 35 RKNIPHLLFSGPPGTGKTATAI 56 (226)
T ss_dssp TTCCCCEEEECSTTSSHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHH
Confidence 3433349999999999998753
No 61
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=67.12 E-value=0.77 Score=48.30 Aligned_cols=51 Identities=16% Similarity=0.144 Sum_probs=28.4
Q ss_pred eeecceeeCCCCChHHHHhhcHHHHH-HHHhCCC----CEEEEEeccCCCCCccccC
Q 002140 70 AYTFDRVFWGDCSTTQVYEDGAKEIA-LSVVSGI----NSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 70 ~F~FD~VF~~~atQeeVye~~v~plV-~svL~G~----N~tIfAYGqTGSGKTyTM~ 121 (960)
.++||.|.+.+....++- ..+..+- ..++.++ ...|+-||++|+|||+.+.
T Consensus 36 ~~~~~~i~g~~~~~~~l~-~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~ 91 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELK-EIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 91 (278)
T ss_dssp CCCGGGSSSCHHHHHHHH-HHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHH
T ss_pred CCCHHHhCChHHHHHHHH-HHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHH
Confidence 578888877653322222 1122110 0122222 2238999999999999864
No 62
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=67.04 E-value=2.5 Score=43.14 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=19.0
Q ss_pred HHHHHhCCCCEEEEEeccCCCCCccc
Q 002140 94 IALSVVSGINSSIFAYGQTSSGKTYT 119 (960)
Q Consensus 94 lV~svL~G~N~tIfAYGqTGSGKTyT 119 (960)
.+..+++|.+ ++..++||||||.+
T Consensus 59 ~i~~~~~~~~--~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 59 AIPVMLHGRE--LLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHH
Confidence 3456678887 57788999999976
No 63
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.00 E-value=1.4 Score=51.08 Aligned_cols=50 Identities=20% Similarity=0.179 Sum_probs=33.1
Q ss_pred eecceeeCCCCChHHHHhhcHHHHHH-HHhC--C--CCEEEEEeccCCCCCcccc
Q 002140 71 YTFDRVFWGDCSTTQVYEDGAKEIAL-SVVS--G--INSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 71 F~FD~VF~~~atQeeVye~~v~plV~-svL~--G--~N~tIfAYGqTGSGKTyTM 120 (960)
-+||-|-+-+.--+++.+.+..|+.. ..+. | .--.|+-||+.|+|||++.
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHH
Confidence 57787777655455565555555543 2333 3 2457999999999999765
No 64
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.67 E-value=1.3 Score=50.68 Aligned_cols=51 Identities=22% Similarity=0.245 Sum_probs=33.6
Q ss_pred eeecceeeCCCCChHHHHhhcHHHHHH-HHhC--CC--CEEEEEeccCCCCCcccc
Q 002140 70 AYTFDRVFWGDCSTTQVYEDGAKEIAL-SVVS--GI--NSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 70 ~F~FD~VF~~~atQeeVye~~v~plV~-svL~--G~--N~tIfAYGqTGSGKTyTM 120 (960)
..+||.|-|-+..-+++.+.+..|+.. .++. |. .-.|+-||+.|+|||++.
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHH
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHH
Confidence 456888877665555565555555543 2333 32 357899999999999876
No 65
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=66.65 E-value=1.6 Score=44.57 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=19.3
Q ss_pred HHHHHhCCCCEEEEEeccCCCCCcccc
Q 002140 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 94 lV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
.+..+++|.| ++..++||||||.+.
T Consensus 60 ai~~i~~~~~--~li~apTGsGKT~~~ 84 (237)
T 3bor_A 60 AIIPCIKGYD--VIAQAQSGTGKTATF 84 (237)
T ss_dssp HHHHHHTTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 4456678877 577899999999763
No 66
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=66.08 E-value=2.7 Score=47.81 Aligned_cols=29 Identities=24% Similarity=0.288 Sum_probs=22.8
Q ss_pred HHHHHHhCCCCEEEEEeccCCCCCccccC
Q 002140 93 EIALSVVSGINSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 93 plV~svL~G~N~tIfAYGqTGSGKTyTM~ 121 (960)
+++..++..-...|.-.|+||||||+||.
T Consensus 157 ~~L~~l~~~~ggii~I~GpnGSGKTTlL~ 185 (418)
T 1p9r_A 157 DNFRRLIKRPHGIILVTGPTGSGKSTTLY 185 (418)
T ss_dssp HHHHHHHTSSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 45556666666788899999999999974
No 67
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=64.88 E-value=3.4 Score=45.43 Aligned_cols=51 Identities=20% Similarity=0.307 Sum_probs=31.8
Q ss_pred eeecceeeCCCCChHHHHhhcHHHHHH-HHhCCC---CEEEEEeccCCCCCcccc
Q 002140 70 AYTFDRVFWGDCSTTQVYEDGAKEIAL-SVVSGI---NSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 70 ~F~FD~VF~~~atQeeVye~~v~plV~-svL~G~---N~tIfAYGqTGSGKTyTM 120 (960)
..+||.|.+.+..-+.+.+.+..|+-. .++.+. ...|+-||++|+|||+..
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 467888887655444555544444322 222221 235888999999999876
No 68
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=64.71 E-value=2.9 Score=42.33 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=18.6
Q ss_pred HHHHHhCCCCEEEEEeccCCCCCcccc
Q 002140 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 94 lV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
.+..+++|.+ ++..++||||||.+.
T Consensus 55 ~i~~~~~~~~--~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 55 TIGLALQGKD--VLGAAKTGSGKTLAF 79 (236)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEEeCCCCcHHHHH
Confidence 3455678877 456689999999863
No 69
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.50 E-value=2.8 Score=48.06 Aligned_cols=70 Identities=14% Similarity=0.197 Sum_probs=43.6
Q ss_pred eeecceeeCCCCChHHHHhhcHHHHHH-HHhC--C--CCEEEEEeccCCCCCccccC-----------------------
Q 002140 70 AYTFDRVFWGDCSTTQVYEDGAKEIAL-SVVS--G--INSSIFAYGQTSSGKTYTMT----------------------- 121 (960)
Q Consensus 70 ~F~FD~VF~~~atQeeVye~~v~plV~-svL~--G--~N~tIfAYGqTGSGKTyTM~----------------------- 121 (960)
.-+||.|-+-+.--+++.+.+..|+.. ..+. | .--.|+-||+.|+|||....
T Consensus 178 ~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~v 257 (437)
T 4b4t_I 178 TESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYL 257 (437)
T ss_dssp CCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSS
T ss_pred CCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccC
Confidence 346777766554445555555555532 2222 3 33579999999999998661
Q ss_pred CCchhhHHHHHHHHHhcc
Q 002140 122 GITECTVADIFDYIHRHE 139 (960)
Q Consensus 122 GIi~ral~dLF~~I~~~~ 139 (960)
|-.+..+..+|.......
T Consensus 258 Gesek~ir~lF~~Ar~~a 275 (437)
T 4b4t_I 258 GDGPRLCRQIFKVAGENA 275 (437)
T ss_dssp SHHHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHHhcC
Confidence 334556777887776543
No 70
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=64.45 E-value=1.5 Score=47.51 Aligned_cols=51 Identities=18% Similarity=0.255 Sum_probs=31.0
Q ss_pred eecceeeCCCCChHHHHhhcHHHHHH-HHhCCC---CEEEEEeccCCCCCccccC
Q 002140 71 YTFDRVFWGDCSTTQVYEDGAKEIAL-SVVSGI---NSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 71 F~FD~VF~~~atQeeVye~~v~plV~-svL~G~---N~tIfAYGqTGSGKTyTM~ 121 (960)
.+||.|.+.+..-+.+.+.+..|+-. .++.|. ...|+-||++|+|||+...
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHH
Confidence 47888877654434444444333332 233332 2468899999999998763
No 71
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=64.36 E-value=1.2 Score=46.05 Aligned_cols=51 Identities=24% Similarity=0.199 Sum_probs=28.8
Q ss_pred eeecceeeCCCCChHHHHhhcHHHHHH-HHhC----CCCEEEEEeccCCCCCccccC
Q 002140 70 AYTFDRVFWGDCSTTQVYEDGAKEIAL-SVVS----GINSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 70 ~F~FD~VF~~~atQeeVye~~v~plV~-svL~----G~N~tIfAYGqTGSGKTyTM~ 121 (960)
.++||.+.+.+..-+.+.+. +..+.. ..+. .....|+-||++|+|||+.+.
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAEL-VEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHH-HHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHH
T ss_pred CCCHHHhcCcHHHHHHHHHH-HHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHH
Confidence 46888888765333333321 222111 0111 234468999999999998763
No 72
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=63.92 E-value=1.5 Score=47.21 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=17.8
Q ss_pred CCCCEEEEEeccCCCCCccccC
Q 002140 100 SGINSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM~ 121 (960)
.+....++-||++|+|||+.+.
T Consensus 41 ~~~~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 41 GEKPSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp SCCCCCEEECBCTTSSHHHHHH
T ss_pred CCCCCcEEEECCCCCCHHHHHH
Confidence 3455688999999999998763
No 73
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=62.97 E-value=1.8 Score=42.64 Aligned_cols=23 Identities=35% Similarity=0.338 Sum_probs=17.4
Q ss_pred HHHhCCCCEEEEEeccCCCCCcccc
Q 002140 96 LSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 96 ~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
..+++|.+ ++..++||+|||.+.
T Consensus 43 ~~~~~~~~--~li~~~tGsGKT~~~ 65 (216)
T 3b6e_A 43 QPALEGKN--IIICLPTGSGKTRVA 65 (216)
T ss_dssp HHHHTTCC--EEEECSCHHHHHHHH
T ss_pred HHHhcCCC--EEEEcCCCCCHHHHH
Confidence 34556766 566899999999876
No 74
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=62.87 E-value=3.3 Score=41.33 Aligned_cols=25 Identities=16% Similarity=0.355 Sum_probs=18.6
Q ss_pred HHHHHhCCCCEEEEEeccCCCCCcccc
Q 002140 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 94 lV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
.+..+++|.| ++..++||||||.+.
T Consensus 44 ~i~~~~~~~~--~li~~~TGsGKT~~~ 68 (220)
T 1t6n_A 44 CIPQAILGMD--VLCQAKSGMGKTAVF 68 (220)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCchhhhh
Confidence 3456678877 566679999999764
No 75
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=62.49 E-value=3 Score=46.40 Aligned_cols=28 Identities=25% Similarity=0.290 Sum_probs=21.2
Q ss_pred HHHHHhCCCCEEEEEeccCCCCCccccC
Q 002140 94 IALSVVSGINSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 94 lV~svL~G~N~tIfAYGqTGSGKTyTM~ 121 (960)
++.+++.--...|.-.|+||||||++|.
T Consensus 114 ~l~~l~~~~~g~i~I~GptGSGKTTlL~ 141 (356)
T 3jvv_A 114 VFKRVSDVPRGLVLVTGPTGSGKSTTLA 141 (356)
T ss_dssp HHHHHHHCSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHhCCCCEEEEECCCCCCHHHHHH
Confidence 4455555555688888999999999973
No 76
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=62.44 E-value=3 Score=45.04 Aligned_cols=42 Identities=29% Similarity=0.421 Sum_probs=26.0
Q ss_pred ecceeeCCCCChHHHHhhcHHHHHHHHhCCCCEEEEEeccCCCCCccccC
Q 002140 72 TFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 72 ~FD~VF~~~atQeeVye~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~ 121 (960)
.|+.+++ |+.+.+ .+-..+-.|.-..++-||+.|+|||+++.
T Consensus 23 ~~~~~~g----~~~~~~----~L~~~i~~g~~~~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 23 TLDEVYG----QNEVIT----TVRKFVDEGKLPHLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp SGGGCCS----CHHHHH----HHHHHHHTTCCCCEEEECSSSSSHHHHHH
T ss_pred cHHHhcC----cHHHHH----HHHHHHhcCCCceEEEECCCCCCHHHHHH
Confidence 4566664 344443 23333445543337889999999999874
No 77
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=62.37 E-value=3.4 Score=41.57 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=18.8
Q ss_pred HHHHHhCCCCEEEEEeccCCCCCcccc
Q 002140 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 94 lV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
.+..+++|.|+ +..++||||||.+.
T Consensus 50 ~i~~~~~~~~~--l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 50 AWPIILQGIDL--IVVAQTGTGKTLSY 74 (228)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHhCCCCE--EEECCCCChHHHHH
Confidence 34566788875 66789999999763
No 78
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=61.51 E-value=4.5 Score=43.59 Aligned_cols=46 Identities=17% Similarity=0.188 Sum_probs=28.0
Q ss_pred eeecceeeCCCCChHHHHhhcHHHHHHHHhCCC-CE--EEEEeccCCCCCcccc
Q 002140 70 AYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGI-NS--SIFAYGQTSSGKTYTM 120 (960)
Q Consensus 70 ~F~FD~VF~~~atQeeVye~~v~plV~svL~G~-N~--tIfAYGqTGSGKTyTM 120 (960)
.|.++.+++ ++...+. +...+..++.|. .. +++-||++|+|||+++
T Consensus 13 ~~~p~~l~g----r~~~~~~-l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 13 SYVPKRLPH----REQQLQQ-LDILLGNWLRNPGHHYPRATLLGRPGTGKTVTL 61 (389)
T ss_dssp TCCCSCCTT----CHHHHHH-HHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred ccCCCCCCC----hHHHHHH-HHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence 345555544 3444444 333444554443 34 6889999999999876
No 79
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=61.43 E-value=4.2 Score=42.74 Aligned_cols=20 Identities=20% Similarity=0.152 Sum_probs=16.5
Q ss_pred CCCEEEEEeccCCCCCcccc
Q 002140 101 GINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 101 G~N~tIfAYGqTGSGKTyTM 120 (960)
.....|+-||++|+|||+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 44457899999999999875
No 80
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=61.22 E-value=10 Score=33.14 Aligned_cols=31 Identities=19% Similarity=0.188 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002140 394 KKDLQIQKMEREIRELTKQRDLAQSRVEDLL 424 (960)
Q Consensus 394 ~k~~~i~~le~ei~el~~q~d~~q~r~~~l~ 424 (960)
+++.+|+..+..|+++.++++...+.+++|.
T Consensus 30 ~K~eELr~kd~~I~eLEk~L~ekd~eI~~Lq 60 (72)
T 3nmd_A 30 EKIEELRQRDALIDELELELDQKDELIQMLQ 60 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344333333333333333
No 81
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=61.09 E-value=3.7 Score=42.09 Aligned_cols=25 Identities=32% Similarity=0.385 Sum_probs=18.2
Q ss_pred HHHHHhCCCCEEEEEeccCCCCCcccc
Q 002140 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 94 lV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
.+..+++|.| ++..++||||||.+.
T Consensus 53 ~i~~i~~~~~--~l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 53 AIPAILEHRD--IMACAQTGSGKTAAF 77 (253)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 3445678877 456679999999763
No 82
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=60.42 E-value=2.6 Score=44.06 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=19.0
Q ss_pred HHHHHHhCCCCEEEEEeccCCCCCccc
Q 002140 93 EIALSVVSGINSSIFAYGQTSSGKTYT 119 (960)
Q Consensus 93 plV~svL~G~N~tIfAYGqTGSGKTyT 119 (960)
.++..++.|.| +++.++||||||.+
T Consensus 83 ~~i~~~~~~~~--~lv~a~TGsGKT~~ 107 (262)
T 3ly5_A 83 KSIRPLLEGRD--LLAAAKTGSGKTLA 107 (262)
T ss_dssp HHHHHHHHTCC--CEECCCTTSCHHHH
T ss_pred HHHHHHhCCCc--EEEEccCCCCchHH
Confidence 34455677877 67789999999976
No 83
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=59.89 E-value=2.3 Score=45.76 Aligned_cols=52 Identities=19% Similarity=0.306 Sum_probs=31.6
Q ss_pred eeecceeeCCCCChHHHHhhcHHHHHHH-HhCCC---CEEEEEeccCCCCCccccC
Q 002140 70 AYTFDRVFWGDCSTTQVYEDGAKEIALS-VVSGI---NSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 70 ~F~FD~VF~~~atQeeVye~~v~plV~s-vL~G~---N~tIfAYGqTGSGKTyTM~ 121 (960)
..+||.|.+.+..-+.+.+.+..|+... ++.+. ...|+-||++|+|||+...
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHH
T ss_pred CCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 3578888775544444444444443321 22222 3468999999999998753
No 84
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=59.52 E-value=25 Score=30.71 Aligned_cols=46 Identities=24% Similarity=0.380 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002140 362 VKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDL 423 (960)
Q Consensus 362 ik~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~~k~~~i~~le~ei~el~~q~d~~q~r~~~l 423 (960)
+++|+..+.+..++| ++++..|+.+++++.+...++..+++++..+
T Consensus 21 i~eLq~~L~~K~eEL----------------r~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 21 LRDLQYALQEKIEEL----------------RQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566666665544443 4555556666666666666666666655544
No 85
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=59.47 E-value=5.9 Score=44.97 Aligned_cols=47 Identities=15% Similarity=0.063 Sum_probs=32.5
Q ss_pred eeecceeeCCCCChHHHHhhcHHHHHHHHhCCCC--EEEEEeccCCCCCccccC
Q 002140 70 AYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGIN--SSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 70 ~F~FD~VF~~~atQeeVye~~v~plV~svL~G~N--~tIfAYGqTGSGKTyTM~ 121 (960)
.|.||.+.+ |+++.+. +..++..+..|.. ..|+-||++|+|||+...
T Consensus 33 ~~~~~~iiG----~~~~~~~-l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 33 KQAASGLVG----QENAREA-CGVIVELIKSKKMAGRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp CSEETTEES----CHHHHHH-HHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHH
T ss_pred hhchhhccC----HHHHHHH-HHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHH
Confidence 567788775 4555544 4456666666654 367889999999998763
No 86
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=59.44 E-value=6 Score=40.31 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=16.5
Q ss_pred CCEEEEEeccCCCCCccccC
Q 002140 102 INSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 102 ~N~tIfAYGqTGSGKTyTM~ 121 (960)
....|+-||++|+|||+...
T Consensus 38 ~~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 44568999999999999764
No 87
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=59.28 E-value=31 Score=32.83 Aligned_cols=66 Identities=17% Similarity=0.238 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 002140 359 KALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGC 429 (960)
Q Consensus 359 ~~lik~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~~k~~~i~~le~ei~el~~q~d~~q~r~~~l~~~~~~ 429 (960)
..+|.+|+.+|.+|+.++.... ......+.+...+|..|+.++.+-+.+++.+...++.|...+..
T Consensus 14 D~~Ie~Lkreie~lk~ele~l~-----~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~ 79 (120)
T 3i00_A 14 DHLIERLYREISGLKAQLENMK-----TESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDE 79 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999885431 12233344555566667777776666666666666666655543
No 88
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=59.12 E-value=4.3 Score=44.07 Aligned_cols=26 Identities=31% Similarity=0.515 Sum_probs=20.6
Q ss_pred HHHHHHhCCCCEEEEEeccCCCCCcccc
Q 002140 93 EIALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 93 plV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
..+..++.|.+ ++..++||||||.+.
T Consensus 69 ~~i~~~~~~~~--~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 69 RAILPCIKGYD--VIAQAQSGTGKTATF 94 (414)
T ss_dssp HHHHHHHTTCC--EEECCCSCSSSHHHH
T ss_pred HHhHHHhCCCC--EEEECCCCCcccHHH
Confidence 44567788988 577899999999773
No 89
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=58.58 E-value=4.4 Score=41.05 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=17.5
Q ss_pred HHHHhCCCCEEEEEeccCCCCCccc
Q 002140 95 ALSVVSGINSSIFAYGQTSSGKTYT 119 (960)
Q Consensus 95 V~svL~G~N~tIfAYGqTGSGKTyT 119 (960)
+..+++|.|+ +..++||||||.+
T Consensus 55 i~~~~~~~~~--l~~a~TGsGKT~~ 77 (230)
T 2oxc_A 55 IPLGRCGLDL--IVQAKSGTGKTCV 77 (230)
T ss_dssp HHHHHTTCCE--EEECCTTSSHHHH
T ss_pred HHHHhCCCCE--EEECCCCCcHHHH
Confidence 4456788774 5667999999976
No 90
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=58.42 E-value=2.2 Score=47.24 Aligned_cols=52 Identities=17% Similarity=0.187 Sum_probs=30.5
Q ss_pred eeecceeeCCCCChHHHHhhcHHHHHH-HHhC---CCCEEEEEeccCCCCCccccC
Q 002140 70 AYTFDRVFWGDCSTTQVYEDGAKEIAL-SVVS---GINSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 70 ~F~FD~VF~~~atQeeVye~~v~plV~-svL~---G~N~tIfAYGqTGSGKTyTM~ 121 (960)
.++||.+.+.+.--+.+.+.+..++.. .++. .-...|+-||++|+|||+...
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHH
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHH
Confidence 467888887544333344333333321 1111 223578999999999998763
No 91
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=58.17 E-value=3.9 Score=41.83 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=19.5
Q ss_pred HHHHHHHhCCCCEEEEEeccCCCCCcccc
Q 002140 92 KEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 92 ~plV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
..++..+..|.+ ++..|+||||||..+
T Consensus 67 ~~~i~~i~~g~~--~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 67 SEILEAISQNSV--VIIRGATGCGKTTQV 93 (235)
T ss_dssp HHHHHHHHHCSE--EEEECCTTSSHHHHH
T ss_pred HHHHHHHhcCCE--EEEEeCCCCCcHHhH
Confidence 445556667754 567899999999765
No 92
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=58.15 E-value=3.8 Score=43.86 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=19.7
Q ss_pred HHHHHhCCCCEEEEEeccCCCCCccc
Q 002140 94 IALSVVSGINSSIFAYGQTSSGKTYT 119 (960)
Q Consensus 94 lV~svL~G~N~tIfAYGqTGSGKTyT 119 (960)
.+..++.|-.--+++.++||||||.+
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~a 147 (300)
T 3fmo_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAA 147 (300)
T ss_dssp HHHHHTSSSCCCEEEECCTTSSHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCCccHH
Confidence 45667787444578889999999976
No 93
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=57.92 E-value=1.1 Score=47.62 Aligned_cols=51 Identities=10% Similarity=0.048 Sum_probs=26.6
Q ss_pred eeecceeeCCCCChHHHHhhcHHHHHH-HHhCCCC----EEEEEeccCCCCCcccc
Q 002140 70 AYTFDRVFWGDCSTTQVYEDGAKEIAL-SVVSGIN----SSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 70 ~F~FD~VF~~~atQeeVye~~v~plV~-svL~G~N----~tIfAYGqTGSGKTyTM 120 (960)
..+||.|-+.+.-.+.+.+.++.|+-. .++++++ ..++-||+.|+|||+.+
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp ------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 356777766554444455444444432 2333222 22889999999999875
No 94
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=57.58 E-value=3.8 Score=41.86 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=17.5
Q ss_pred HHHHhCCCCEEEEEeccCCCCCcccc
Q 002140 95 ALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 95 V~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
+..+++|.|+ +..++||||||.+.
T Consensus 60 i~~~~~g~~~--l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 60 WPVALSGLDM--VGVAQTGSGKTLSY 83 (242)
T ss_dssp HHHHHHTCCE--EEEECTTSCHHHHH
T ss_pred HHHHhCCCCE--EEECCCcCHHHHHH
Confidence 3456688775 45569999999773
No 95
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=57.47 E-value=4.6 Score=41.77 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=18.3
Q ss_pred HHHHHhCCCCEEEEEeccCCCCCcccc
Q 002140 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 94 lV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
.+..+++|.+ ++..++||||||.+.
T Consensus 73 ~i~~i~~~~~--~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 73 AIPLALQGRD--IIGLAETGSGKTGAF 97 (249)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEEcCCCCCchhHh
Confidence 3455678877 456679999999763
No 96
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=56.05 E-value=69 Score=28.60 Aligned_cols=58 Identities=24% Similarity=0.306 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002140 362 VKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVG 428 (960)
Q Consensus 362 ik~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~~k~~~i~~le~ei~el~~q~d~~q~r~~~l~~~~~ 428 (960)
|.-|+-||..||.+-. .......+.......+..++..|+.++..-++|+..|+-++.
T Consensus 22 I~lLqmEieELKekN~---------~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~e 79 (81)
T 2jee_A 22 ITLLQMEIEELKEKNN---------SLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME 79 (81)
T ss_dssp HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH---------HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4556667777766531 112222222333445888899999999999999998887764
No 97
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=55.68 E-value=4.2 Score=47.07 Aligned_cols=50 Identities=18% Similarity=0.146 Sum_probs=30.9
Q ss_pred eecceeeCCCCChHHHHhhcHHHHH-----HHHhCCCCEEEEEeccCCCCCcccc
Q 002140 71 YTFDRVFWGDCSTTQVYEDGAKEIA-----LSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 71 F~FD~VF~~~atQeeVye~~v~plV-----~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
..|+.+.+.+..-+.+.+.+..++- ..+-......|+-||++|+|||+..
T Consensus 201 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHH
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHH
Confidence 4677776655444555555444321 1111244567999999999999875
No 98
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=55.39 E-value=4.5 Score=42.79 Aligned_cols=21 Identities=33% Similarity=0.378 Sum_probs=16.7
Q ss_pred CCCEEEEEeccCCCCCccccC
Q 002140 101 GINSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 101 G~N~tIfAYGqTGSGKTyTM~ 121 (960)
.-...+.-.|+||||||+++.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~ 43 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIA 43 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHH
Confidence 344577788999999999873
No 99
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=55.11 E-value=3.3 Score=41.49 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=17.6
Q ss_pred HHHHhCCCCEEEEEeccCCCCCcccc
Q 002140 95 ALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 95 V~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
+..+++|.|+ +..++||||||.+.
T Consensus 35 i~~~~~~~~~--lv~a~TGsGKT~~~ 58 (219)
T 1q0u_A 35 IPGALRGESM--VGQSQTGTGKTHAY 58 (219)
T ss_dssp HHHHHHTCCE--EEECCSSHHHHHHH
T ss_pred HHHHhCCCCE--EEECCCCChHHHHH
Confidence 3455678774 56789999999863
No 100
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=54.85 E-value=54 Score=29.96 Aligned_cols=64 Identities=17% Similarity=0.145 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002140 359 KALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRM 426 (960)
Q Consensus 359 ~~lik~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~~k~~~i~~le~ei~el~~q~d~~q~r~~~l~~~ 426 (960)
..-.++|++|+..|+.|+...... |.-+.-.+...++.+|.++++.+.+++...++...-....
T Consensus 22 a~~~~~lk~E~~~lk~E~~stSaQ----DeFAKWaKL~Rk~DKl~~ele~l~~~l~~~k~~F~~~~~~ 85 (93)
T 3sjb_C 22 SKKYLAKVKERHELKEFNNSISAQ----DNYAKWTKNNRKLDSLDKEINNLKDEIQSENKAFQAHLHK 85 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCTT----TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHhccchH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445789999999999999765433 3334455666778888888888888888777766544433
No 101
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=54.68 E-value=4.2 Score=43.38 Aligned_cols=42 Identities=24% Similarity=0.302 Sum_probs=26.7
Q ss_pred ecceeeCCCCChHHHHhhcHHHHHHHHhCCCCEEEEEeccCCCCCccccC
Q 002140 72 TFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 72 ~FD~VF~~~atQeeVye~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~ 121 (960)
+|+.+.+.+. ....+...+..|....++-||++|+|||+++.
T Consensus 35 ~~~~i~g~~~--------~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 35 NLDEVTAQDH--------AVTVLKKTLKSANLPHMLFYGPPGTGKTSTIL 76 (353)
T ss_dssp STTTCCSCCT--------THHHHHHHTTCTTCCCEEEECSTTSSHHHHHH
T ss_pred CHHHhhCCHH--------HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHH
Confidence 5666666432 23334444445533348889999999998864
No 102
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=54.59 E-value=5.6 Score=42.77 Aligned_cols=31 Identities=23% Similarity=0.398 Sum_probs=24.3
Q ss_pred HHHHHHHHhCCC---CEEEEEeccCCCCCccccC
Q 002140 91 AKEIALSVVSGI---NSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 91 v~plV~svL~G~---N~tIfAYGqTGSGKTyTM~ 121 (960)
+...+..+++|. --||+-||+.|+|||+...
T Consensus 89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 445577888887 3479999999999998753
No 103
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=53.94 E-value=5 Score=43.35 Aligned_cols=47 Identities=21% Similarity=0.286 Sum_probs=29.3
Q ss_pred ceeecceeeCCCCChHHHHhhcHHHHHHHHhCC-CCEEEEEeccCCCCCcccc
Q 002140 69 SAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSG-INSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 69 ~~F~FD~VF~~~atQeeVye~~v~plV~svL~G-~N~tIfAYGqTGSGKTyTM 120 (960)
..|.++.+++ ++...+. +...+..++.| ....|+-||++|+|||+++
T Consensus 15 ~~~~p~~l~g----r~~~~~~-l~~~l~~~~~~~~~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 15 PLSVFKEIPF----REDILRD-AAIAIRYFVKNEVKFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp HHHHCSSCTT----CHHHHHH-HHHHHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred CccCCCCCCC----hHHHHHH-HHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 3455565554 3444444 23344444443 4558999999999999875
No 104
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=53.67 E-value=5.3 Score=45.02 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=21.4
Q ss_pred HHHHHHhCCCCEEEEEeccCCCCCccc
Q 002140 93 EIALSVVSGINSSIFAYGQTSSGKTYT 119 (960)
Q Consensus 93 plV~svL~G~N~tIfAYGqTGSGKTyT 119 (960)
..+..++.|.+..++..|+||||||..
T Consensus 121 ~ai~~il~~~~~~~l~~a~TGsGKT~~ 147 (479)
T 3fmp_B 121 NALPLMLAEPPQNLIAQSQSGTGKTAA 147 (479)
T ss_dssp HHHHHHTSBSCCEEEEECCSSSSHHHH
T ss_pred HHHHHHHcCCCCcEEEEcCCCCchhHH
Confidence 345566777667789999999999976
No 105
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=53.55 E-value=5.4 Score=43.51 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=19.2
Q ss_pred HHHHHhCCCCEEEEEeccCCCCCcccc
Q 002140 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 94 lV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
.+..+++|.| ++..++||||||.+.
T Consensus 67 ai~~i~~~~~--~lv~a~TGsGKT~~~ 91 (410)
T 2j0s_A 67 AIKQIIKGRD--VIAQSQSGTGKTATF 91 (410)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCCchHHH
Confidence 3456778887 567789999999764
No 106
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=52.49 E-value=6.4 Score=37.14 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=16.5
Q ss_pred CEEEEEeccCCCCCccccCCC
Q 002140 103 NSSIFAYGQTSSGKTYTMTGI 123 (960)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~GI 123 (960)
+..|+-||++|+|||+....+
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i 47 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYF 47 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGG
T ss_pred CCcEEEECCCCccHHHHHHHH
Confidence 345778999999999887554
No 107
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=51.95 E-value=5.6 Score=43.06 Aligned_cols=28 Identities=18% Similarity=0.229 Sum_probs=20.7
Q ss_pred HHHHHHhCCCCEEEEEeccCCCCCcccc
Q 002140 93 EIALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 93 plV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
..+..++.|.+..++..++||||||.+.
T Consensus 54 ~~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 54 NALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp HHHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 3456667775556778899999999873
No 108
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=51.90 E-value=4.4 Score=47.14 Aligned_cols=30 Identities=27% Similarity=0.295 Sum_probs=20.6
Q ss_pred HHHHHHHHhCCCCEEEEEeccCCCCCccccC
Q 002140 91 AKEIALSVVSGINSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 91 v~plV~svL~G~N~tIfAYGqTGSGKTyTM~ 121 (960)
+..++..+..|.+.++++ ++||||||.++.
T Consensus 187 i~~~~~~~~~~~~~~ll~-~~TGsGKT~~~~ 216 (590)
T 3h1t_A 187 INRAVQSVLQGKKRSLIT-MATGTGKTVVAF 216 (590)
T ss_dssp HHHHHHHHHTTCSEEEEE-ECTTSCHHHHHH
T ss_pred HHHHHHHHhcCCCceEEE-ecCCCChHHHHH
Confidence 334445555677665555 899999999964
No 109
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=51.56 E-value=5.6 Score=38.93 Aligned_cols=18 Identities=22% Similarity=0.237 Sum_probs=15.3
Q ss_pred EEEEEeccCCCCCccccC
Q 002140 104 SSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 104 ~tIfAYGqTGSGKTyTM~ 121 (960)
..++-||++|+|||+.+.
T Consensus 46 ~~~ll~G~~G~GKT~l~~ 63 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIAR 63 (250)
T ss_dssp SEEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 478899999999998753
No 110
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=51.41 E-value=2.8 Score=47.57 Aligned_cols=52 Identities=17% Similarity=0.245 Sum_probs=28.8
Q ss_pred eeecceeeCCCCChHHHHhhcHHHHHH-HHhCC---CCEEEEEeccCCCCCccccC
Q 002140 70 AYTFDRVFWGDCSTTQVYEDGAKEIAL-SVVSG---INSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 70 ~F~FD~VF~~~atQeeVye~~v~plV~-svL~G---~N~tIfAYGqTGSGKTyTM~ 121 (960)
..+||.|.+.+..-+.+.+.+..|+-. .++.| ....|+-||++|+|||+...
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHH
Confidence 467888776443222233222222211 12222 23468889999999998763
No 111
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=50.68 E-value=5.3 Score=41.67 Aligned_cols=19 Identities=32% Similarity=0.371 Sum_probs=15.8
Q ss_pred CEEEEEeccCCCCCccccC
Q 002140 103 NSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~ 121 (960)
...|+-||++|+|||++..
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4568889999999998763
No 112
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=50.48 E-value=6.6 Score=41.13 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=17.6
Q ss_pred HHHHhCCCCEEEEEeccCCCCCcccc
Q 002140 95 ALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 95 V~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
+..+++|.+ ++..++||||||.+.
T Consensus 25 i~~i~~~~~--~lv~~~TGsGKT~~~ 48 (337)
T 2z0m_A 25 IPLMLQGKN--VVVRAKTGSGKTAAY 48 (337)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhcCCC--EEEEcCCCCcHHHHH
Confidence 345567876 456689999999765
No 113
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=50.44 E-value=6.2 Score=45.99 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=17.2
Q ss_pred HhCCCCEEEEEeccCCCCCccccC
Q 002140 98 VVSGINSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 98 vL~G~N~tIfAYGqTGSGKTyTM~ 121 (960)
+-.|.+ |.-.|+||||||+||.
T Consensus 257 v~~g~~--i~I~GptGSGKTTlL~ 278 (511)
T 2oap_1 257 IEHKFS--AIVVGETASGKTTTLN 278 (511)
T ss_dssp HHTTCC--EEEEESTTSSHHHHHH
T ss_pred HhCCCE--EEEECCCCCCHHHHHH
Confidence 346776 5667999999999873
No 114
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=50.17 E-value=84 Score=30.44 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 002140 391 LLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGC 429 (960)
Q Consensus 391 ~l~~k~~~i~~le~ei~el~~q~d~~q~r~~~l~~~~~~ 429 (960)
.+...+.+++.+++++.+++++...++.++..|...+++
T Consensus 97 el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 97 ELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666777777777777777777777777665543
No 115
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=49.72 E-value=6.4 Score=42.16 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=19.4
Q ss_pred HHHHHhCCCCEEEEEeccCCCCCcccc
Q 002140 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 94 lV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
.+..++.|-...++..++||||||.+.
T Consensus 35 ~i~~~~~~~~~~~lv~a~TGsGKT~~~ 61 (395)
T 3pey_A 35 ALPLLLHNPPRNMIAQSQSGTGKTAAF 61 (395)
T ss_dssp HHHHHHCSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCcHHHHH
Confidence 345567774345677889999999764
No 116
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=49.12 E-value=6.5 Score=41.22 Aligned_cols=42 Identities=17% Similarity=0.233 Sum_probs=25.7
Q ss_pred ecceeeCCCCChHHHHhhcHHHHHHHHhCCCCEEEEEeccCCCCCccccC
Q 002140 72 TFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 72 ~FD~VF~~~atQeeVye~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~ 121 (960)
+|+.+.+ ++++.+. +...+-.|....++-||++|+|||++..
T Consensus 23 ~~~~~~g----~~~~~~~----l~~~l~~~~~~~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 23 RLDDIVG----QEHIVKR----LKHYVKTGSMPHLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp STTTCCS----CHHHHHH----HHHHHHHTCCCEEEEESCTTSSHHHHHH
T ss_pred CHHHhhC----CHHHHHH----HHHHHHcCCCCeEEEECcCCCCHHHHHH
Confidence 4566554 4444443 2222234544448899999999998864
No 117
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=48.99 E-value=12 Score=39.79 Aligned_cols=32 Identities=22% Similarity=0.266 Sum_probs=23.0
Q ss_pred hcHHHHHHHHhCCC-----CEEEEEeccCCCCCcccc
Q 002140 89 DGAKEIALSVVSGI-----NSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 89 ~~v~plV~svL~G~-----N~tIfAYGqTGSGKTyTM 120 (960)
.....++..++.|+ ...|+..|++|||||+..
T Consensus 14 ~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 14 NRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp HHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHH
Confidence 34556666666553 356888999999999864
No 118
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=48.99 E-value=5.4 Score=41.88 Aligned_cols=18 Identities=33% Similarity=0.305 Sum_probs=15.6
Q ss_pred CEEEEEeccCCCCCcccc
Q 002140 103 NSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 103 N~tIfAYGqTGSGKTyTM 120 (960)
...++-||++|+|||++.
T Consensus 47 ~~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELA 64 (311)
T ss_dssp SEEEEEESCSSSSHHHHH
T ss_pred ceEEEEECCCCcCHHHHH
Confidence 367899999999999875
No 119
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=48.97 E-value=6.6 Score=40.51 Aligned_cols=24 Identities=21% Similarity=-0.058 Sum_probs=17.7
Q ss_pred HHHhCCCCEEEEEeccCCCCCccccC
Q 002140 96 LSVVSGINSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 96 ~svL~G~N~tIfAYGqTGSGKTyTM~ 121 (960)
..++++.+ ++.+|+||+|||+...
T Consensus 103 ~~~~~~~~--~ll~~~tG~GKT~~a~ 126 (237)
T 2fz4_A 103 ERWLVDKR--GCIVLPTGSGKTHVAM 126 (237)
T ss_dssp HHHTTTSE--EEEEESSSTTHHHHHH
T ss_pred HHHHhCCC--EEEEeCCCCCHHHHHH
Confidence 34566655 5667899999998863
No 120
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=48.95 E-value=8.2 Score=41.22 Aligned_cols=44 Identities=16% Similarity=0.150 Sum_probs=28.0
Q ss_pred ecceeeCCCCChHHHHhhcHHHHHHHHh--CCCCEEEEEeccCCCCCcccc
Q 002140 72 TFDRVFWGDCSTTQVYEDGAKEIALSVV--SGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 72 ~FD~VF~~~atQeeVye~~v~plV~svL--~G~N~tIfAYGqTGSGKTyTM 120 (960)
+|+.+.+ ++.+.+. +...+..+. .+....|+-||++|+|||+..
T Consensus 27 ~~~~iiG----~~~~~~~-l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 27 NFDGYIG----QESIKKN-LNVFIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp SGGGCCS----CHHHHHH-HHHHHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhCC----hHHHHHH-HHHHHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 5676665 3444444 333444443 344457899999999999875
No 121
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=48.92 E-value=6.5 Score=42.60 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=18.4
Q ss_pred HHHHHhCCCCEEEEEeccCCCCCcccc
Q 002140 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 94 lV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
.+..++.|.+ ++..++||||||.+.
T Consensus 51 ~i~~i~~~~~--~li~a~TGsGKT~~~ 75 (400)
T 1s2m_A 51 AIPVAITGRD--ILARAKNGTGKTAAF 75 (400)
T ss_dssp HHHHHHHTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhcCCC--EEEECCCCcHHHHHH
Confidence 3455667877 567789999999754
No 122
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=48.55 E-value=5.1 Score=37.90 Aligned_cols=20 Identities=15% Similarity=0.448 Sum_probs=16.2
Q ss_pred CCCEEEEEeccCCCCCcccc
Q 002140 101 GINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 101 G~N~tIfAYGqTGSGKTyTM 120 (960)
..+..|+-||++|+|||+..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 44556889999999999875
No 123
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=48.48 E-value=4 Score=43.68 Aligned_cols=20 Identities=40% Similarity=0.619 Sum_probs=16.6
Q ss_pred CCCEEEEEeccCCCCCcccc
Q 002140 101 GINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 101 G~N~tIfAYGqTGSGKTyTM 120 (960)
+....++-||++|+|||+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 44567889999999999875
No 124
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=47.96 E-value=11 Score=45.17 Aligned_cols=73 Identities=18% Similarity=0.180 Sum_probs=45.1
Q ss_pred eecceeeCCCCChHHHHhhcHHHHHHHHhCCCCEEEEEeccCCCCCccccCCCchh-------------hHHHHHHHHHh
Q 002140 71 YTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITEC-------------TVADIFDYIHR 137 (960)
Q Consensus 71 F~FD~VF~~~atQeeVye~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~GIi~r-------------al~dLF~~I~~ 137 (960)
|.+.. |.|...|..-+.. ++..+-.|... ....|.||||||+||..++.. ....|++.+..
T Consensus 2 ~~~~~-~~~~~~q~~ai~~----l~~~~~~~~~~-~~l~g~tgs~kt~~~a~~~~~~~~~~lvv~~~~~~A~ql~~el~~ 75 (664)
T 1c4o_A 2 FRYRG-PSPKGDQPKAIAG----LVEALRDGERF-VTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAAQLAAEFRE 75 (664)
T ss_dssp CCCCS-CCCCTTHHHHHHH----HHHHHHTTCSE-EEEEECTTSCHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCC-CCCCCCChHHHHH----HHHHHhcCCCc-EEEEcCCCcHHHHHHHHHHHHhCCCEEEEecCHHHHHHHHHHHHH
Confidence 34443 3778888877655 55566677543 345699999999999653321 24566666655
Q ss_pred c-cccceEEEeee
Q 002140 138 H-EERAFVLKFSA 149 (960)
Q Consensus 138 ~-~~~~f~V~vS~ 149 (960)
. ++..+....||
T Consensus 76 ~~~~~~V~~fps~ 88 (664)
T 1c4o_A 76 LFPENAVEYFISY 88 (664)
T ss_dssp HCTTSEEEECCCG
T ss_pred HCCCCeEEEcCch
Confidence 4 33344455565
No 125
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=47.72 E-value=7.5 Score=42.29 Aligned_cols=24 Identities=29% Similarity=0.243 Sum_probs=18.1
Q ss_pred HHHHhCCCCEEEEEeccCCCCCcccc
Q 002140 95 ALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 95 V~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
+..+++|.|+ +..++||||||.+.
T Consensus 46 i~~i~~~~~~--lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 46 IPIIKEKRDL--MACAQTGSGKTAAF 69 (417)
T ss_dssp HHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHccCCCE--EEEcCCCCHHHHHH
Confidence 4456788875 56789999999754
No 126
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=47.45 E-value=5.6 Score=41.43 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=20.4
Q ss_pred HHHHhCCCC--EEEEEeccCCCCCccccCC
Q 002140 95 ALSVVSGIN--SSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 95 V~svL~G~N--~tIfAYGqTGSGKTyTM~G 122 (960)
+..++.|.- -+++-||+.|+|||+....
T Consensus 48 l~~~~~~iPkkn~ili~GPPGtGKTt~a~a 77 (212)
T 1tue_A 48 LKSFLKGTPKKNCLVFCGPANTGKSYFGMS 77 (212)
T ss_dssp HHHHHHTCTTCSEEEEESCGGGCHHHHHHH
T ss_pred HHHHHhcCCcccEEEEECCCCCCHHHHHHH
Confidence 444555632 4699999999999988654
No 127
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=47.16 E-value=7.2 Score=44.55 Aligned_cols=44 Identities=16% Similarity=0.277 Sum_probs=29.5
Q ss_pred ecceeeCCCCChHHHHhhcHHHHHHHHhCCCCEEEEEeccCCCCCcccc
Q 002140 72 TFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 72 ~FD~VF~~~atQeeVye~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
+||.+++ |+.+... ...+...+-.|.-..|+-||++|+|||+..
T Consensus 24 ~l~~ivG----q~~~~~~-~~~L~~~i~~~~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 24 NLAQYIG----QQHLLAA-GKPLPRAIEAGHLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp STTTCCS----CHHHHST-TSHHHHHHHHTCCCEEEEECSTTSSHHHHH
T ss_pred CHHHhCC----cHHHHhc-hHHHHHHHHcCCCcEEEEECCCCCcHHHHH
Confidence 4566654 5555532 344444555566678999999999999875
No 128
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=46.92 E-value=5.7 Score=44.18 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=19.5
Q ss_pred HHHHhCCCCEEEEEeccCCCCCccccC
Q 002140 95 ALSVVSGINSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 95 V~svL~G~N~tIfAYGqTGSGKTyTM~ 121 (960)
+..+.-.-...|.-.|+||||||+++.
T Consensus 128 l~~l~~~~g~~i~ivG~~GsGKTTll~ 154 (372)
T 2ewv_A 128 VLELCHRKMGLILVTGPTGSGKSTTIA 154 (372)
T ss_dssp HHHHTTSSSEEEEEECSSSSSHHHHHH
T ss_pred HHHHhhcCCCEEEEECCCCCCHHHHHH
Confidence 344433445678889999999999873
No 129
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=46.87 E-value=5.4 Score=47.42 Aligned_cols=28 Identities=25% Similarity=0.258 Sum_probs=18.8
Q ss_pred HHHHHhCCCCEEEEEeccCCCCCccccCC
Q 002140 94 IALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 94 lV~svL~G~N~tIfAYGqTGSGKTyTM~G 122 (960)
.|..++..-..+ +-.|+.|||||+|+..
T Consensus 197 AV~~al~~~~~~-lI~GPPGTGKT~ti~~ 224 (646)
T 4b3f_X 197 AVLFALSQKELA-IIHGPPGTGKTTTVVE 224 (646)
T ss_dssp HHHHHHHCSSEE-EEECCTTSCHHHHHHH
T ss_pred HHHHHhcCCCce-EEECCCCCCHHHHHHH
Confidence 345555443444 4669999999999744
No 130
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=45.85 E-value=86 Score=26.89 Aligned_cols=50 Identities=20% Similarity=0.203 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002140 360 ALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQR 413 (960)
Q Consensus 360 ~lik~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~~k~~~i~~le~ei~el~~q~ 413 (960)
.-.++|++|+..|+.++.+.... .+| +.-.+...++.+|.++++.+.+++
T Consensus 6 ~~~~~l~~E~~~lk~E~~stSaQ---DeF-AKWaKL~Rk~DKl~~ele~l~~~l 55 (65)
T 3sja_C 6 KKYLAKVKERHELKEFNNSISAQ---DNY-AKWTKNNRKLDSLDKEINNLKDEI 55 (65)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTT---TTH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchH---HHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35688999999999999775433 233 333344445555555555554443
No 131
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=45.73 E-value=11 Score=41.02 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=19.9
Q ss_pred HHHhCC---CCEEEEE--eccCCCCCccccC
Q 002140 96 LSVVSG---INSSIFA--YGQTSSGKTYTMT 121 (960)
Q Consensus 96 ~svL~G---~N~tIfA--YGqTGSGKTyTM~ 121 (960)
..+..| ....++- ||+.|+|||+.+.
T Consensus 40 ~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 40 NRLLSGAGLSDVNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp HHHHTSSCBCCEEEEEECTTCCSSSHHHHHH
T ss_pred HHHhcCCCCCCCEEEEeCcCcCCCCHHHHHH
Confidence 455556 5567888 9999999998763
No 132
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=45.39 E-value=9.9 Score=40.10 Aligned_cols=46 Identities=13% Similarity=0.134 Sum_probs=27.5
Q ss_pred eecceeeCCCCChHHHHhhcHHHHHHHHh--CCCCEEEEEeccCCCCCccccC
Q 002140 71 YTFDRVFWGDCSTTQVYEDGAKEIALSVV--SGINSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 71 F~FD~VF~~~atQeeVye~~v~plV~svL--~G~N~tIfAYGqTGSGKTyTM~ 121 (960)
.+|+.+.+.+ .+... +...+..+. .+....|+-||++|+|||+...
T Consensus 9 ~~~~~~ig~~----~~~~~-l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 9 KTLDEYIGQE----RLKQK-LRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CSTTTCCSCH----HHHHH-HHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHH
T ss_pred ccHHHhhCHH----HHHHH-HHHHHHHHHccCCCCCcEEEECCCCCCHHHHHH
Confidence 3677766543 33333 233333332 2345678889999999998753
No 133
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=44.89 E-value=12 Score=46.25 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=36.0
Q ss_pred eeecceeeCCCCChHHHHhhcHHHHHH-HHhCCCC----EEEEEeccCCCCCcccc
Q 002140 70 AYTFDRVFWGDCSTTQVYEDGAKEIAL-SVVSGIN----SSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 70 ~F~FD~VF~~~atQeeVye~~v~plV~-svL~G~N----~tIfAYGqTGSGKTyTM 120 (960)
.-+||.|-|-+..-+++.+.+..|+.. .++.++. ..|+-||+.|+|||...
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHH
T ss_pred CCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 457888887776666666665556543 3455544 36999999999999765
No 134
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=43.63 E-value=9.5 Score=40.99 Aligned_cols=25 Identities=16% Similarity=0.355 Sum_probs=18.6
Q ss_pred HHHHHhCCCCEEEEEeccCCCCCcccc
Q 002140 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 94 lV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
.+..++.|.+ ++..++||+|||.+.
T Consensus 38 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 38 CIPQAILGMD--VLCQAKSGMGKTAVF 62 (391)
T ss_dssp HHHHHTTTCC--EEEECSSCSSHHHHH
T ss_pred HHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 4556778877 456679999999764
No 135
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=43.33 E-value=6.3 Score=41.20 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=17.0
Q ss_pred CCCCEEEEEeccCCCCCccccC
Q 002140 100 SGINSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM~ 121 (960)
.|....++-||+.|+|||++..
T Consensus 35 ~~~~~~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 35 RKNIPHLLFSGPPGTGKTATAI 56 (319)
T ss_dssp TTCCCCEEEESSSSSSHHHHHH
T ss_pred CCCCCeEEEECcCCcCHHHHHH
Confidence 4544448999999999998764
No 136
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=42.92 E-value=12 Score=43.07 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=20.5
Q ss_pred HHHHHHhCCCCEEEEEeccCCCCCccc
Q 002140 93 EIALSVVSGINSSIFAYGQTSSGKTYT 119 (960)
Q Consensus 93 plV~svL~G~N~tIfAYGqTGSGKTyT 119 (960)
.++..++.|-+--+++.++||||||.+
T Consensus 101 ~~i~~~l~~~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 101 KTIKPILSSEDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp HHHHHHHSSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHHhcCCCCeEEEECCCCCCccHH
Confidence 345566766666778899999999976
No 137
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=42.81 E-value=9.5 Score=41.87 Aligned_cols=24 Identities=29% Similarity=0.249 Sum_probs=18.2
Q ss_pred HHHHHhCCCCEEEEEeccCCCCCccc
Q 002140 94 IALSVVSGINSSIFAYGQTSSGKTYT 119 (960)
Q Consensus 94 lV~svL~G~N~tIfAYGqTGSGKTyT 119 (960)
.+..+++|.| ++..++||||||..
T Consensus 29 ~i~~i~~~~~--~lv~apTGsGKT~~ 52 (414)
T 3oiy_A 29 WAKRIVQGKS--FTMVAPTGVGKTTF 52 (414)
T ss_dssp HHHHHTTTCC--EECCSCSSSSHHHH
T ss_pred HHHHHhcCCC--EEEEeCCCCCHHHH
Confidence 3445678876 56888999999983
No 138
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=41.36 E-value=11 Score=42.08 Aligned_cols=25 Identities=36% Similarity=0.424 Sum_probs=18.7
Q ss_pred HHHHHhCCCCEEEEEeccCCCCCcccc
Q 002140 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 94 lV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
.+..++.|.+ +++.++||||||.+.
T Consensus 86 ai~~i~~g~d--~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 86 SIPVISSGRD--LMACAQTGSGKTAAF 110 (434)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhcCCC--EEEECCCCCCchHHH
Confidence 3455678877 467779999999753
No 139
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=41.23 E-value=6.4 Score=42.06 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=18.0
Q ss_pred HHHHhCCCCEEEEEeccCCCCCccccC
Q 002140 95 ALSVVSGINSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 95 V~svL~G~N~tIfAYGqTGSGKTyTM~ 121 (960)
...+..|. .|+-||++|+|||+.+.
T Consensus 40 ~~~l~~~~--~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 40 LIGICTGG--HILLEGVPGLAKTLSVN 64 (331)
T ss_dssp HHHHHHTC--CEEEESCCCHHHHHHHH
T ss_pred HHHHHcCC--eEEEECCCCCcHHHHHH
Confidence 33444454 57889999999999864
No 140
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=41.13 E-value=17 Score=37.62 Aligned_cols=32 Identities=25% Similarity=0.246 Sum_probs=20.7
Q ss_pred hcHHHHHHHHhCCCC-----EEEEEeccCCCCCcccc
Q 002140 89 DGAKEIALSVVSGIN-----SSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 89 ~~v~plV~svL~G~N-----~tIfAYGqTGSGKTyTM 120 (960)
.....++..++.|+. ..|+..|+.|||||+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 13 HALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp HHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHH
T ss_pred HHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHH
Confidence 334444445554433 46888999999999753
No 141
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=40.44 E-value=10 Score=43.40 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=19.2
Q ss_pred HHHHhCCCCEEEEEeccCCCCCcccc
Q 002140 95 ALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 95 V~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
+..+++|.+..++..++||||||.+.
T Consensus 150 i~~i~~~~~~~~ll~apTGsGKT~~~ 175 (508)
T 3fho_A 150 LPLLLSNPPRNMIGQSQSGTGKTAAF 175 (508)
T ss_dssp HHHHHCSSCCCEEEECCSSTTSHHHH
T ss_pred HHHHHcCCCCCEEEECCCCccHHHHH
Confidence 34567774455678899999999873
No 142
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=40.23 E-value=7.1 Score=40.87 Aligned_cols=23 Identities=17% Similarity=0.121 Sum_probs=15.8
Q ss_pred HHhCCCCEEEEEeccCCCCCccccC
Q 002140 97 SVVSGINSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 97 svL~G~N~tIfAYGqTGSGKTyTM~ 121 (960)
.++.|.++ | ..++||+|||.+..
T Consensus 124 ~~l~~~~~-l-l~~~tGsGKT~~~~ 146 (282)
T 1rif_A 124 EGLVNRRR-I-LNLPTSAGRSLIQA 146 (282)
T ss_dssp HHHHHSEE-E-ECCCTTSCHHHHHH
T ss_pred HHHhcCCe-E-EEcCCCCCcHHHHH
Confidence 34445444 3 38999999998863
No 143
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=39.93 E-value=7.3 Score=41.73 Aligned_cols=16 Identities=25% Similarity=0.553 Sum_probs=14.3
Q ss_pred EEEeccCCCCCccccC
Q 002140 106 IFAYGQTSSGKTYTMT 121 (960)
Q Consensus 106 IfAYGqTGSGKTyTM~ 121 (960)
++-||++|+|||+++.
T Consensus 39 ~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCM 54 (354)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 7889999999999874
No 144
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=39.87 E-value=12 Score=42.26 Aligned_cols=25 Identities=32% Similarity=0.504 Sum_probs=18.5
Q ss_pred HHHHHhCCCCEEEEEeccCCCCCcccc
Q 002140 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 94 lV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
.+..++.|.| ++..++||||||.+.
T Consensus 15 ~i~~~~~~~~--~l~~~~tGsGKT~~~ 39 (556)
T 4a2p_A 15 LAQPAINGKN--ALICAPTGSGKTFVS 39 (556)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHcCCC--EEEEcCCCChHHHHH
Confidence 3455678877 456789999999764
No 145
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=39.81 E-value=7.3 Score=41.40 Aligned_cols=19 Identities=21% Similarity=0.191 Sum_probs=15.4
Q ss_pred CEEEEEeccCCCCCccccC
Q 002140 103 NSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~ 121 (960)
...++-||++|+|||+++.
T Consensus 48 ~~~~L~~G~~G~GKT~la~ 66 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAK 66 (324)
T ss_dssp CSEEEECSSTTSSHHHHHH
T ss_pred CeEEEeeCcCCCCHHHHHH
Confidence 3567888999999999864
No 146
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=39.70 E-value=14 Score=43.51 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=19.7
Q ss_pred HHHHHHhCCCCEEEEEeccCCCCCcccc
Q 002140 93 EIALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 93 plV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
.++..++.|.+ +++.++||+|||.+.
T Consensus 51 ~~i~~il~g~d--~lv~~pTGsGKTl~~ 76 (591)
T 2v1x_A 51 ETINVTMAGKE--VFLVMPTGGGKSLCY 76 (591)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCTTHHH
T ss_pred HHHHHHHcCCC--EEEEECCCChHHHHH
Confidence 34556778988 567789999999753
No 147
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=39.62 E-value=11 Score=39.39 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=17.1
Q ss_pred hCCCCEEEEEeccCCCCCccccC
Q 002140 99 VSGINSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 99 L~G~N~tIfAYGqTGSGKTyTM~ 121 (960)
-.|.-..++-||+.|+|||+...
T Consensus 38 ~~~~~~~~ll~G~~G~GKt~la~ 60 (323)
T 1sxj_B 38 KDGNMPHMIISGMPGIGKTTSVH 60 (323)
T ss_dssp HSCCCCCEEEECSTTSSHHHHHH
T ss_pred HcCCCCeEEEECcCCCCHHHHHH
Confidence 34543338899999999998764
No 148
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=39.58 E-value=6.4 Score=45.54 Aligned_cols=46 Identities=22% Similarity=0.270 Sum_probs=27.9
Q ss_pred eeecceeeCCCCChHHHHhhcHHHHHHHH-----hCC----CCEEEEEeccCCCCCcccc
Q 002140 70 AYTFDRVFWGDCSTTQVYEDGAKEIALSV-----VSG----INSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 70 ~F~FD~VF~~~atQeeVye~~v~plV~sv-----L~G----~N~tIfAYGqTGSGKTyTM 120 (960)
.++|+.|.+.+..-+++ ..++..+ +.+ ....|+-||++|+|||+.+
T Consensus 12 ~~~f~di~G~~~~~~~l-----~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 12 RVTFKDVGGAEEAIEEL-----KEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCGGGCCSCHHHHHHH-----HHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHH-----HHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 56888887754332233 2333322 111 2345899999999999876
No 149
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=39.50 E-value=5.1 Score=44.84 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=17.5
Q ss_pred CEEEEEeccCCCCCccccCCCch
Q 002140 103 NSSIFAYGQTSSGKTYTMTGITE 125 (960)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~GIi~ 125 (960)
+.-++.+|.||||||.++..+++
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~ 75 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAY 75 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 45578889999999998654444
No 150
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=39.44 E-value=15 Score=36.69 Aligned_cols=30 Identities=13% Similarity=0.060 Sum_probs=19.6
Q ss_pred HHHHHHHHhC--CCCEEEEEeccCCCCCcccc
Q 002140 91 AKEIALSVVS--GINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 91 v~plV~svL~--G~N~tIfAYGqTGSGKTyTM 120 (960)
+..+++.+.. +-.-.|.-.|++|||||+.+
T Consensus 8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 3444444442 34456667799999999875
No 151
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=38.88 E-value=1.4e+02 Score=26.06 Aligned_cols=66 Identities=18% Similarity=0.156 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 002140 363 KHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGCD 430 (960)
Q Consensus 363 k~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~~k~~~i~~le~ei~el~~q~d~~q~r~~~l~~~~~~~ 430 (960)
..+..-+..|+..+-... ....+....|..--..|..|+.++.+|+.+.+.+..+++.|.+.+..-
T Consensus 15 ~~in~~f~~Lr~lvP~~~--~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 15 DHIKDSFHSLRDSVPSLQ--GEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHTTSGGGT--TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555543211 112345667777777888888888888888888888888888777543
No 152
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=38.88 E-value=18 Score=32.49 Aligned_cols=44 Identities=32% Similarity=0.364 Sum_probs=36.8
Q ss_pred hhCCHHHHHHHHHhhCCCCCcccchhhhhhhccCCcccchhHHHHHHHHHHHhhhcccccccc
Q 002140 870 RRLSADERNKLYQKWGIGLNSKRRRLQLANHLWSNSKDMNRITESAAIIAKLIRFVEQGDALK 932 (960)
Q Consensus 870 ~~l~~~ere~ly~kw~i~l~~k~r~lql~~~lw~~~~d~~hv~esa~~vaklv~~~~~~~~~k 932 (960)
..||.||.+.|..||+|.. -||=.-+++|| |||.+|+ .+|+..|
T Consensus 21 ~vLs~eE~~~ll~~y~i~~------~qLP~I~~~DP------------va~~~g~-k~GdVvk 64 (84)
T 4ayb_H 21 EVLSIDEAYKILKELGIRP------EQLPWIRASDP------------VARSINA-KPGDIIR 64 (84)
T ss_dssp EECCHHHHHHHHHHHTCCG------GGSCCEESSSH------------HHHHHTC-CTTCEEE
T ss_pred EECCHHHHHHHHHHhcCCH------hHCCeecccCH------------hHHhhCC-CCCCEEE
Confidence 4689999999999999952 38999999999 9999996 5577655
No 153
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=38.79 E-value=12 Score=37.58 Aligned_cols=30 Identities=23% Similarity=0.277 Sum_probs=21.6
Q ss_pred HHHHHHHhCC-C--CEEEEEeccCCCCCccccC
Q 002140 92 KEIALSVVSG-I--NSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 92 ~plV~svL~G-~--N~tIfAYGqTGSGKTyTM~ 121 (960)
-+-++.++.| + ...+.-+|++|+|||+.+.
T Consensus 10 ~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~ 42 (243)
T 1n0w_A 10 SKELDKLLQGGIETGSITEMFGEFRTGKTQICH 42 (243)
T ss_dssp CHHHHHHTTTSEETTSEEEEECCTTSSHHHHHH
T ss_pred ChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHH
Confidence 3456777754 2 3467788999999998863
No 154
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=38.58 E-value=10 Score=43.28 Aligned_cols=44 Identities=16% Similarity=0.234 Sum_probs=28.3
Q ss_pred ecceeeCCCCChHHHHhhcHHHHHHHHhCCCCEEEEEeccCCCCCccccCCC
Q 002140 72 TFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGI 123 (960)
Q Consensus 72 ~FD~VF~~~atQeeVye~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~GI 123 (960)
.||.|.+. +... ..++..+..+....++-||++|+|||+...++
T Consensus 178 ~ld~iiGr----~~~i----~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~l 221 (468)
T 3pxg_A 178 SLDPVIGR----SKEI----QRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGL 221 (468)
T ss_dssp CSCCCCCC----HHHH----HHHHHHHHCSSSCEEEEESCTTTTTHHHHHHH
T ss_pred CCCCccCc----HHHH----HHHHHHHhccCCCCeEEECCCCCCHHHHHHHH
Confidence 46666654 2222 23444444455566788999999999987553
No 155
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=38.49 E-value=1.6e+02 Score=25.84 Aligned_cols=66 Identities=27% Similarity=0.305 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002140 362 VKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVG 428 (960)
Q Consensus 362 ik~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~~k~~~i~~le~ei~el~~q~d~~q~r~~~l~~~~~ 428 (960)
..+|+.-...|+..+-...... -......|...-..|..|+.+..++..+.+.++.+++.|.+.+.
T Consensus 13 R~~lk~~f~~Lr~~vP~~~~~~-k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 13 RAHLRLSLEKLKGLVPLGPDSS-RHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHSSCCCSSSC-CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566666777664321111 11235677777778888888888888888888888888777654
No 156
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=38.13 E-value=8 Score=41.54 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=18.5
Q ss_pred HHHHHhCCCCEEEEEeccCCCCCcccc
Q 002140 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 94 lV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
.+..++.|.+ ++..++||||||.+.
T Consensus 51 ~i~~i~~~~~--~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 51 AIMPIIEGHD--VLAQAQSGTGKTGTF 75 (394)
T ss_dssp HHHHHHHTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 3455667877 456789999999763
No 157
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=37.99 E-value=28 Score=41.64 Aligned_cols=79 Identities=14% Similarity=0.264 Sum_probs=50.6
Q ss_pred eeecceeeCCCCChHHHHhhcHHHHHHHHhCCCCEEEEEeccCCCCCccccCCCch-------------hhHHHHHHHHH
Q 002140 70 AYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITE-------------CTVADIFDYIH 136 (960)
Q Consensus 70 ~F~FD~VF~~~atQeeVye~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~GIi~-------------ral~dLF~~I~ 136 (960)
.|..-.=|.|...|..-++. ++..+-.|... ....|.|||||||+|..++. .....|++.+.
T Consensus 4 ~~~~~~~~~p~~~Q~~~i~~----l~~~~~~~~~~-~~l~g~~gs~k~~~~a~~~~~~~~~~lvv~~~~~~A~~l~~el~ 78 (661)
T 2d7d_A 4 RFELVSKYQPQGDQPKAIEK----LVKGIQEGKKH-QTLLGATGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQLYSEFK 78 (661)
T ss_dssp CCCCCCSCCCCTTHHHHHHH----HHHHHHTTCSE-EEEEECTTSCHHHHHHHHHHHHCCCEEEECSSHHHHHHHHHHHH
T ss_pred cceeecCCCCCCCCHHHHHH----HHHHHhcCCCc-EEEECcCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHH
Confidence 36666668899999888765 45566667533 34569999999999965332 12456666665
Q ss_pred hc-cccceEEEeeeeeee
Q 002140 137 RH-EERAFVLKFSAMEIY 153 (960)
Q Consensus 137 ~~-~~~~f~V~vS~lEIY 153 (960)
.. ++..+....||+--|
T Consensus 79 ~~~~~~~v~~fps~yd~~ 96 (661)
T 2d7d_A 79 EFFPNNAVEYFVSYYDYY 96 (661)
T ss_dssp HHCTTSEEEEECCCEEEE
T ss_pred HHcCCCcEEEcccccccc
Confidence 54 333455566664333
No 158
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=37.98 E-value=5.2 Score=46.51 Aligned_cols=46 Identities=22% Similarity=0.257 Sum_probs=27.7
Q ss_pred eeecceeeCCCCChHHHHhhcHHHHHHHH-----hCCC----CEEEEEeccCCCCCcccc
Q 002140 70 AYTFDRVFWGDCSTTQVYEDGAKEIALSV-----VSGI----NSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 70 ~F~FD~VF~~~atQeeVye~~v~plV~sv-----L~G~----N~tIfAYGqTGSGKTyTM 120 (960)
.++||.|.+.+..-.++ +.++..+ +..+ ...|+-||++|+|||+.+
T Consensus 27 ~~~f~dv~G~~~~k~~l-----~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 27 KVTFKDVAGAEEAKEEL-----KEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCTTSSCSCHHHHHHH-----HHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHcCCcHHHHHHH-----HHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHH
Confidence 56888887754322222 2333322 2222 224899999999999876
No 159
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=37.90 E-value=14 Score=41.67 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=17.8
Q ss_pred HHHHhCCCCEEEEEeccCCCCCcccc
Q 002140 95 ALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 95 V~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
+..++.|.|+ +..++||||||.+.
T Consensus 13 i~~~~~~~~~--l~~~~tGsGKT~~~ 36 (555)
T 3tbk_A 13 ALPAKKGKNT--IICAPTGCGKTFVS 36 (555)
T ss_dssp HHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHhCCCCE--EEEeCCCChHHHHH
Confidence 4455688774 56689999999763
No 160
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=37.70 E-value=11 Score=39.74 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=17.1
Q ss_pred HHHHhCCCCEEEEEeccCCCCCcccc
Q 002140 95 ALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 95 V~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
+..+++|.. .++..++||||||.+.
T Consensus 37 i~~~~~~~~-~~l~~~~TGsGKT~~~ 61 (367)
T 1hv8_A 37 IPLFLNDEY-NIVAQARTGSGKTASF 61 (367)
T ss_dssp HHHHHHTCS-EEEEECCSSSSHHHHH
T ss_pred HHHHhCCCC-CEEEECCCCChHHHHH
Confidence 344556633 3466789999999874
No 161
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=37.64 E-value=8.1 Score=45.78 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=17.4
Q ss_pred CEEEEEeccCCCCCccccCCCc
Q 002140 103 NSSIFAYGQTSSGKTYTMTGIT 124 (960)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~GIi 124 (960)
+..++..|++|||||+|+..++
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll 185 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLL 185 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHH
Confidence 3467888999999999986543
No 162
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=37.46 E-value=8.3 Score=41.75 Aligned_cols=16 Identities=25% Similarity=0.308 Sum_probs=13.8
Q ss_pred EEEEeccCCCCCcccc
Q 002140 105 SIFAYGQTSSGKTYTM 120 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (960)
.++-||++|+|||+.+
T Consensus 53 ~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CEEEESSTTSSHHHHH
T ss_pred eEEEECCCCCcHHHHH
Confidence 4677999999999876
No 163
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=37.45 E-value=6.6 Score=48.27 Aligned_cols=45 Identities=18% Similarity=0.305 Sum_probs=29.2
Q ss_pred ecceeeCCCCChHHHHhhcHHHHHHHHhCCCCEEEEEeccCCCCCccccCCCc
Q 002140 72 TFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGIT 124 (960)
Q Consensus 72 ~FD~VF~~~atQeeVye~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~GIi 124 (960)
.||.|++.+ + .+..++..+..+....++-||++|+|||+.+.++.
T Consensus 168 ~ld~viGr~----~----~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la 212 (854)
T 1qvr_A 168 KLDPVIGRD----E----EIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLA 212 (854)
T ss_dssp CSCCCCSCH----H----HHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHH
T ss_pred CCcccCCcH----H----HHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHH
Confidence 456666533 2 23344544555655567889999999999876643
No 164
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=37.22 E-value=17 Score=36.18 Aligned_cols=29 Identities=17% Similarity=0.110 Sum_probs=19.8
Q ss_pred HHHHHHHhC---CCCEEEEEeccCCCCCcccc
Q 002140 92 KEIALSVVS---GINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 92 ~plV~svL~---G~N~tIfAYGqTGSGKTyTM 120 (960)
..+++.++. +-...|...|.+|||||+.+
T Consensus 8 ~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 8 DFLCKTILAIKTAGRLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp HHHHHHHHTSCCSSSEEEEEEECTTSSHHHHH
T ss_pred HHHHHHHHHhccCCCeEEEEECCCCCCHHHHH
Confidence 345555543 33457778899999999875
No 165
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=36.59 E-value=9.5 Score=37.09 Aligned_cols=17 Identities=24% Similarity=0.329 Sum_probs=14.2
Q ss_pred EEEEeccCCCCCccccC
Q 002140 105 SIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM~ 121 (960)
.+.-.|++|||||+.+.
T Consensus 11 i~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56678999999999874
No 166
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=36.25 E-value=62 Score=30.47 Aligned_cols=30 Identities=13% Similarity=0.224 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002140 396 DLQIQKMEREIRELTKQRDLAQSRVEDLLR 425 (960)
Q Consensus 396 ~~~i~~le~ei~el~~q~d~~q~r~~~l~~ 425 (960)
...+..|++++..|+...+.++.++.+|.+
T Consensus 34 ~~~~~~Lq~El~~lr~~~~~l~~~iReLEq 63 (111)
T 2v66_B 34 YKQVSVLEDDLSQTRAIKEQLHKYVRELEQ 63 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666666554
No 167
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=36.09 E-value=15 Score=37.38 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=18.0
Q ss_pred HHHHHHhCCCCEEEEEeccCCCCCcccc
Q 002140 93 EIALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 93 plV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
.+++.+-.|--.+ -.|+.|||||+.+
T Consensus 14 ~~l~~i~~Ge~~~--liG~nGsGKSTLl 39 (208)
T 3b85_A 14 HYVDAIDTNTIVF--GLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHHCSEEE--EECCTTSSTTHHH
T ss_pred HHHHhccCCCEEE--EECCCCCCHHHHH
Confidence 3445555565444 4799999999876
No 168
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=35.47 E-value=1.9e+02 Score=28.60 Aligned_cols=57 Identities=23% Similarity=0.331 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002140 360 ALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLR 425 (960)
Q Consensus 360 ~lik~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~~k~~~i~~le~ei~el~~q~d~~q~r~~~l~~ 425 (960)
..+..|+.++..|+.++. +....++++...++.+..|+..|+.+...++.++..+.+
T Consensus 68 ~~I~~L~~El~~l~~ki~---------dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~ 124 (152)
T 3a7p_A 68 NTLAILQKELKSKEQEIR---------RLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKK 124 (152)
T ss_dssp HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777776653 234455666666666666666666666666555555443
No 169
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=35.35 E-value=18 Score=42.04 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=19.3
Q ss_pred HHHHHhCCCCEEEEEeccCCCCCccc
Q 002140 94 IALSVVSGINSSIFAYGQTSSGKTYT 119 (960)
Q Consensus 94 lV~svL~G~N~tIfAYGqTGSGKTyT 119 (960)
++..++.|-+--+++.++||||||.+
T Consensus 51 ~i~~il~~~~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 51 TIKPILSSEDHDVIARAKTGTGKTFA 76 (579)
T ss_dssp HHHHHHCSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHHccCCCeEEEEcCCCcHHHHH
Confidence 44556655555678889999999976
No 170
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=35.18 E-value=1e+02 Score=29.93 Aligned_cols=53 Identities=19% Similarity=0.233 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002140 361 LVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVED 422 (960)
Q Consensus 361 lik~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~~k~~~i~~le~ei~el~~q~d~~q~r~~~ 422 (960)
.++.+.+|+..|+.+|.+ ....+.+...++.++.+++.+|+.+.-.++..+.+
T Consensus 83 ~l~~~~kE~~~lK~el~~---------~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 83 DIENKDKEIYDLKHELIA---------AQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555566655532 22334455556667777777777777776665543
No 171
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=35.14 E-value=14 Score=41.24 Aligned_cols=23 Identities=22% Similarity=-0.052 Sum_probs=17.1
Q ss_pred HHHhCCCCEEEEEeccCCCCCcccc
Q 002140 96 LSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 96 ~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
..++.|.+ ++..|+||+|||.+.
T Consensus 103 ~~i~~~~~--~ll~~~TGsGKT~~~ 125 (472)
T 2fwr_A 103 ERWLVDKR--GCIVLPTGSGKTHVA 125 (472)
T ss_dssp HHHTTTTE--EEEECCTTSCHHHHH
T ss_pred HHHHhcCC--EEEEeCCCCCHHHHH
Confidence 34566654 566789999999875
No 172
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=34.70 E-value=14 Score=36.45 Aligned_cols=29 Identities=24% Similarity=0.155 Sum_probs=19.6
Q ss_pred HHHHHHhC-CC--CEEEEEeccCCCCCccccC
Q 002140 93 EIALSVVS-GI--NSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 93 plV~svL~-G~--N~tIfAYGqTGSGKTyTM~ 121 (960)
+.++.++. |+ ...+.-+|++|+|||+.+.
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHH
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHH
Confidence 34555664 33 2356668999999998864
No 173
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=34.28 E-value=15 Score=43.26 Aligned_cols=25 Identities=32% Similarity=0.356 Sum_probs=18.8
Q ss_pred HHHHHhCCCCEEEEEeccCCCCCcccc
Q 002140 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 94 lV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
++..+++|.| ++..++||+|||.+.
T Consensus 15 ~i~~il~g~~--~ll~~~TGsGKTl~~ 39 (699)
T 4gl2_A 15 VAQPALEGKN--IIICLPTGCGKTRVA 39 (699)
T ss_dssp HHHHHHSSCC--EEECCCTTSCHHHHH
T ss_pred HHHHHHhCCC--EEEEcCCCCcHHHHH
Confidence 4455677877 566789999999864
No 174
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=34.25 E-value=12 Score=34.90 Aligned_cols=16 Identities=31% Similarity=0.341 Sum_probs=13.4
Q ss_pred EEEEeccCCCCCcccc
Q 002140 105 SIFAYGQTSSGKTYTM 120 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (960)
.|+-.|.+|||||+..
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999854
No 175
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=34.07 E-value=68 Score=26.26 Aligned_cols=30 Identities=13% Similarity=0.216 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002140 399 IQKMEREIRELTKQRDLAQSRVEDLLRMVG 428 (960)
Q Consensus 399 i~~le~ei~el~~q~d~~q~r~~~l~~~~~ 428 (960)
++.|..++.+|+.+.+.+..+++++.+.+.
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666666666666666666666554
No 176
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=33.90 E-value=16 Score=36.03 Aligned_cols=29 Identities=28% Similarity=0.280 Sum_probs=21.7
Q ss_pred HHHHHHhC-CCC--EEEEEeccCCCCCccccC
Q 002140 93 EIALSVVS-GIN--SSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 93 plV~svL~-G~N--~tIfAYGqTGSGKTyTM~ 121 (960)
+-++.++. |+. ..+.-+|++|+|||..+.
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~ 38 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLAL 38 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHH
Confidence 45677775 553 467889999999998764
No 177
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=33.78 E-value=18 Score=35.77 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=20.3
Q ss_pred HHHHHHhC-CC--CEEEEEeccCCCCCcccc
Q 002140 93 EIALSVVS-GI--NSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 93 plV~svL~-G~--N~tIfAYGqTGSGKTyTM 120 (960)
+-++.++. |+ ...+.-+|++|||||+.+
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHH
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHH
Confidence 45566664 43 346777899999999876
No 178
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=33.68 E-value=12 Score=42.59 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=19.8
Q ss_pred HhCCCCEEEEEeccCCCCCcccc
Q 002140 98 VVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 98 vL~G~N~tIfAYGqTGSGKTyTM 120 (960)
+++|++..|...|++|+|||+.|
T Consensus 26 vl~~vsf~I~lvG~sGaGKSTLl 48 (418)
T 2qag_C 26 VKRGFEFTLMVVGESGLGKSTLI 48 (418)
T ss_dssp CC-CCCEEEEEECCTTSSHHHHH
T ss_pred EecCCCEEEEEECCCCCcHHHHH
Confidence 58899999999999999999765
No 179
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=33.67 E-value=15 Score=39.31 Aligned_cols=20 Identities=15% Similarity=0.391 Sum_probs=16.6
Q ss_pred CCCEEEEEeccCCCCCcccc
Q 002140 101 GINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 101 G~N~tIfAYGqTGSGKTyTM 120 (960)
..+..|+-||++|+|||+..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH
T ss_pred CCCCcEEEECCCCchHHHHH
Confidence 45667889999999999864
No 180
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=33.67 E-value=10 Score=44.88 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=18.7
Q ss_pred HHHHhCCCCEEEEEeccCCCCCccccCCC
Q 002140 95 ALSVVSGINSSIFAYGQTSSGKTYTMTGI 123 (960)
Q Consensus 95 V~svL~G~N~tIfAYGqTGSGKTyTM~GI 123 (960)
|..++.+ ..++..|+.|||||+|+..+
T Consensus 189 v~~~l~~--~~~li~GppGTGKT~~~~~~ 215 (624)
T 2gk6_A 189 VKTVLQR--PLSLIQGPPGTGKTVTSATI 215 (624)
T ss_dssp HHHHHTC--SEEEEECCTTSCHHHHHHHH
T ss_pred HHHHhcC--CCeEEECCCCCCHHHHHHHH
Confidence 3444432 34567899999999997553
No 181
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=33.53 E-value=16 Score=40.39 Aligned_cols=22 Identities=36% Similarity=0.311 Sum_probs=16.3
Q ss_pred HHhCCCCEEEEEeccCCCCCcccc
Q 002140 97 SVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 97 svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
.+-.|.+..| .|+||||||+++
T Consensus 171 ~i~~G~~i~i--vG~sGsGKSTll 192 (361)
T 2gza_A 171 AVQLERVIVV--AGETGSGKTTLM 192 (361)
T ss_dssp HHHTTCCEEE--EESSSSCHHHHH
T ss_pred HHhcCCEEEE--ECCCCCCHHHHH
Confidence 4446765544 499999999987
No 182
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=33.14 E-value=12 Score=36.71 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=12.8
Q ss_pred EEEEeccCCCCCcccc
Q 002140 105 SIFAYGQTSSGKTYTM 120 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (960)
.|.-.|++|||||+.+
T Consensus 9 ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLV 24 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4556799999999875
No 183
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=33.13 E-value=22 Score=38.09 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=15.5
Q ss_pred CEEEEEeccCCCCCcccc
Q 002140 103 NSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 103 N~tIfAYGqTGSGKTyTM 120 (960)
...++-||+.|+|||+++
T Consensus 38 ~~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp CSEEEEESCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 446889999999999876
No 184
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=33.03 E-value=11 Score=41.06 Aligned_cols=18 Identities=44% Similarity=0.565 Sum_probs=15.5
Q ss_pred CEEEEEeccCCCCCcccc
Q 002140 103 NSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 103 N~tIfAYGqTGSGKTyTM 120 (960)
...|+-||++|+|||++.
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 456889999999999876
No 185
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=32.43 E-value=14 Score=41.77 Aligned_cols=24 Identities=13% Similarity=0.012 Sum_probs=18.6
Q ss_pred HHHHhCCCCEEEEEeccCCCCCccc
Q 002140 95 ALSVVSGINSSIFAYGQTSSGKTYT 119 (960)
Q Consensus 95 V~svL~G~N~tIfAYGqTGSGKTyT 119 (960)
+..+++|.+. +++.|+||||||..
T Consensus 12 i~~~l~~~~~-~lv~a~TGsGKT~~ 35 (451)
T 2jlq_A 12 DEDIFRKKRL-TIMDLHPGAGKTKR 35 (451)
T ss_dssp CGGGGSTTCE-EEECCCTTSSCCTT
T ss_pred HHHHHhcCCe-EEEECCCCCCHhhH
Confidence 4556788775 45779999999986
No 186
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=32.27 E-value=21 Score=38.57 Aligned_cols=17 Identities=29% Similarity=0.489 Sum_probs=14.5
Q ss_pred EEEEEeccCCCCCcccc
Q 002140 104 SSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (960)
..+.-.|++|||||+++
T Consensus 101 ~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 36677899999999987
No 187
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=32.24 E-value=1.3e+02 Score=30.68 Aligned_cols=46 Identities=24% Similarity=0.330 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002140 359 KALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRV 420 (960)
Q Consensus 359 ~~lik~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~~k~~~i~~le~ei~el~~q~d~~q~r~ 420 (960)
..+|..|+.|+..|..+|. .++.+|+.|++++..++.+....+.++
T Consensus 19 d~LV~~L~~En~~L~~ql~----------------~k~~ei~~L~~ql~sl~~~~~~~~~~~ 64 (190)
T 4emc_A 19 DLLVANLVNENFVLSEKLD----------------TKATEIKQLQKQIDSLNAQVKELKTQT 64 (190)
T ss_dssp -CHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 4478889999888887764 445566666666666665554444333
No 188
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=32.03 E-value=12 Score=40.70 Aligned_cols=18 Identities=44% Similarity=0.553 Sum_probs=15.1
Q ss_pred CEEEEEeccCCCCCcccc
Q 002140 103 NSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 103 N~tIfAYGqTGSGKTyTM 120 (960)
...|+-||++|+|||+..
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 356888999999999875
No 189
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=31.93 E-value=16 Score=39.73 Aligned_cols=25 Identities=20% Similarity=0.064 Sum_probs=17.8
Q ss_pred HHHHHhCCCCEEEEEeccCCCCCccccC
Q 002140 94 IALSVVSGINSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 94 lV~svL~G~N~tIfAYGqTGSGKTyTM~ 121 (960)
.+..++.| .++..++||+|||.+..
T Consensus 17 ~i~~~~~~---~~ll~~~tG~GKT~~~~ 41 (494)
T 1wp9_A 17 IYAKCKET---NCLIVLPTGLGKTLIAM 41 (494)
T ss_dssp HHHHGGGS---CEEEECCTTSCHHHHHH
T ss_pred HHHHHhhC---CEEEEcCCCCCHHHHHH
Confidence 34556777 34556899999998763
No 190
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=31.76 E-value=12 Score=40.11 Aligned_cols=24 Identities=25% Similarity=0.464 Sum_probs=16.6
Q ss_pred HHhCCCCEEEEEeccCCCCCcccc
Q 002140 97 SVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 97 svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
.+++|++..|...|++|+|||..|
T Consensus 12 ~~l~~~~~~I~lvG~nG~GKSTLl 35 (301)
T 2qnr_A 12 SVKKGFEFTLMVVGESGLGKSTLI 35 (301)
T ss_dssp ------CEEEEEEEETTSSHHHHH
T ss_pred EEEcCCCEEEEEECCCCCCHHHHH
Confidence 467899999999999999999765
No 191
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=31.41 E-value=13 Score=36.27 Aligned_cols=16 Identities=13% Similarity=0.285 Sum_probs=12.9
Q ss_pred EEEEeccCCCCCcccc
Q 002140 105 SIFAYGQTSSGKTYTM 120 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (960)
.+.-.|++|||||+.+
T Consensus 7 ~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIK 22 (180)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999865
No 192
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=31.39 E-value=21 Score=40.38 Aligned_cols=37 Identities=8% Similarity=0.057 Sum_probs=24.3
Q ss_pred CCChHHHHhhcHHHHHHHHhCCCCEEEEEeccCCCCCccccC
Q 002140 80 DCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 80 ~atQeeVye~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~ 121 (960)
+..|.+++..+ +..+..|- ..++..|..|||||+++.
T Consensus 27 n~~Q~~av~~~----~~~i~~~~-~~~li~G~aGTGKT~ll~ 63 (459)
T 3upu_A 27 TEGQKNAFNIV----MKAIKEKK-HHVTINGPAGTGATTLTK 63 (459)
T ss_dssp CHHHHHHHHHH----HHHHHSSS-CEEEEECCTTSCHHHHHH
T ss_pred CHHHHHHHHHH----HHHHhcCC-CEEEEEeCCCCCHHHHHH
Confidence 34577766553 23333333 378889999999998763
No 193
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=31.34 E-value=48 Score=30.34 Aligned_cols=56 Identities=18% Similarity=0.148 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002140 360 ALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSR 419 (960)
Q Consensus 360 ~lik~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~~k~~~i~~le~ei~el~~q~d~~q~r 419 (960)
.-.++|++|+..|+.|+...... |.-+.-.+...++.+|.++++.+.+++...++.
T Consensus 30 ~~~~~lk~E~~~lk~E~~stSaQ----DEFAKWAKL~Rk~DKl~~ele~l~~~L~s~ks~ 85 (94)
T 3vlc_E 30 KKYLAKVKERHELKEFNNSISAQ----DNYAKWTKNNRKLDSLDKEINNLKDEIQSENKA 85 (94)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTT----TCHHHHHHHHHHHHHHHHHTTTHHHHTTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999765433 223344455566667777777666666554443
No 194
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=31.23 E-value=22 Score=41.93 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=17.0
Q ss_pred HHHhCCCCEEEEEeccCCCCCccc
Q 002140 96 LSVVSGINSSIFAYGQTSSGKTYT 119 (960)
Q Consensus 96 ~svL~G~N~tIfAYGqTGSGKTyT 119 (960)
..++.|.|+ +..++||||||..
T Consensus 23 ~~~l~g~~~--iv~~~TGsGKTl~ 44 (696)
T 2ykg_A 23 LPAMKGKNT--IICAPTGCGKTFV 44 (696)
T ss_dssp HHHHTTCCE--EEECCTTSSHHHH
T ss_pred HHHHcCCCE--EEEcCCCchHHHH
Confidence 445678874 5678999999985
No 195
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=31.13 E-value=14 Score=36.93 Aligned_cols=17 Identities=24% Similarity=0.182 Sum_probs=13.7
Q ss_pred EEEEEeccCCCCCcccc
Q 002140 104 SSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (960)
..|.-.|++|||||+++
T Consensus 9 ~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred cEEEEECcCCCCHHHHH
Confidence 35666799999999875
No 196
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=30.65 E-value=27 Score=38.21 Aligned_cols=18 Identities=39% Similarity=0.388 Sum_probs=15.0
Q ss_pred CEEEEEeccCCCCCcccc
Q 002140 103 NSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 103 N~tIfAYGqTGSGKTyTM 120 (960)
...|.-.|++|+|||+|+
T Consensus 129 g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 356777899999999886
No 197
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=30.49 E-value=10 Score=39.37 Aligned_cols=21 Identities=24% Similarity=0.158 Sum_probs=17.2
Q ss_pred CEEEEEeccCCCCCccccCCC
Q 002140 103 NSSIFAYGQTSSGKTYTMTGI 123 (960)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~GI 123 (960)
...++-||..|+|||..+.|+
T Consensus 12 G~i~litG~mGsGKTT~ll~~ 32 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRR 32 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHH
T ss_pred cEEEEEECCCCCcHHHHHHHH
Confidence 357788999999999987664
No 198
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=29.76 E-value=27 Score=42.14 Aligned_cols=17 Identities=35% Similarity=0.358 Sum_probs=14.9
Q ss_pred EEEEEeccCCCCCcccc
Q 002140 104 SSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (960)
+.|+-||++|+|||+..
T Consensus 522 ~~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 522 GSFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEEESCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 37899999999999875
No 199
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=29.54 E-value=77 Score=28.10 Aligned_cols=33 Identities=21% Similarity=0.405 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002140 394 KKDLQIQKMEREIRELTKQRDLAQSRVEDLLRM 426 (960)
Q Consensus 394 ~k~~~i~~le~ei~el~~q~d~~q~r~~~l~~~ 426 (960)
+.+.-|.+|+.+..++.+..+.++.+.++|.+.
T Consensus 43 KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~ 75 (78)
T 3iv1_A 43 KLEEMVTRLDQEVAEVDKNIELLKKKDEELSSA 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456677777777888888887777777654
No 200
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=29.51 E-value=12 Score=41.16 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=15.6
Q ss_pred CCCCEEEEEeccCCCCCccccCC
Q 002140 100 SGINSSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM~G 122 (960)
.+.| ++..|+||||||+++.-
T Consensus 34 ~~~~--~~i~G~~G~GKs~~~~~ 54 (392)
T 4ag6_A 34 TNSN--WTILAKPGAGKSFTAKM 54 (392)
T ss_dssp CCCC--EEEECCTTSSHHHHHHH
T ss_pred ccCc--eEEEcCCCCCHHHHHHH
Confidence 4444 46679999999998743
No 201
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=29.35 E-value=15 Score=35.44 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=14.1
Q ss_pred EEEEEeccCCCCCcccc
Q 002140 104 SSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (960)
..|.-.|+.|||||+.+
T Consensus 10 ~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIA 26 (191)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45777899999999865
No 202
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=29.22 E-value=32 Score=41.37 Aligned_cols=17 Identities=35% Similarity=0.362 Sum_probs=15.3
Q ss_pred EEEEEeccCCCCCcccc
Q 002140 104 SSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (960)
+.++-||++|+|||++.
T Consensus 489 ~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 57999999999999876
No 203
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=29.02 E-value=17 Score=34.49 Aligned_cols=16 Identities=31% Similarity=0.356 Sum_probs=13.5
Q ss_pred EEEEEeccCCCCCccc
Q 002140 104 SSIFAYGQTSSGKTYT 119 (960)
Q Consensus 104 ~tIfAYGqTGSGKTyT 119 (960)
..|+..|..|||||+.
T Consensus 3 ~~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEecCCCCCHHHH
Confidence 3578899999999984
No 204
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=28.97 E-value=15 Score=38.91 Aligned_cols=19 Identities=26% Similarity=0.434 Sum_probs=15.7
Q ss_pred CCEEEEEeccCCCCCcccc
Q 002140 102 INSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 102 ~N~tIfAYGqTGSGKTyTM 120 (960)
|+-++...|++|+|||+.|
T Consensus 1 f~f~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 1 FDFNIMVVGQSGLGKSTLV 19 (270)
T ss_dssp CEEEEEEEESSSSSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHH
Confidence 3567788899999999875
No 205
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=28.83 E-value=13 Score=36.36 Aligned_cols=15 Identities=27% Similarity=0.492 Sum_probs=12.4
Q ss_pred EEEeccCCCCCcccc
Q 002140 106 IFAYGQTSSGKTYTM 120 (960)
Q Consensus 106 IfAYGqTGSGKTyTM 120 (960)
+.-.|++|||||+++
T Consensus 4 i~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEESSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445799999999876
No 206
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=28.49 E-value=22 Score=41.32 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=19.9
Q ss_pred HHHHHHhCCCCEEEEEeccCCCCCccccCC
Q 002140 93 EIALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 93 plV~svL~G~N~tIfAYGqTGSGKTyTM~G 122 (960)
-++..+..|. -|+-||++|+|||+....
T Consensus 33 ~l~~al~~~~--~VLL~GpPGtGKT~LAra 60 (500)
T 3nbx_X 33 LCLLAALSGE--SVFLLGPPGIAKSLIARR 60 (500)
T ss_dssp HHHHHHHHTC--EEEEECCSSSSHHHHHHH
T ss_pred HHHHHHhcCC--eeEeecCchHHHHHHHHH
Confidence 3444455554 578899999999998743
No 207
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=28.37 E-value=10 Score=37.66 Aligned_cols=19 Identities=26% Similarity=0.247 Sum_probs=15.8
Q ss_pred EEEEeccCCCCCccccCCC
Q 002140 105 SIFAYGQTSSGKTYTMTGI 123 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM~GI 123 (960)
.++-||+.|+|||+.+.++
T Consensus 5 i~vi~G~~gsGKTT~ll~~ 23 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSF 23 (184)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4678999999999987654
No 208
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=28.32 E-value=15 Score=36.67 Aligned_cols=16 Identities=19% Similarity=0.434 Sum_probs=13.2
Q ss_pred EEEEeccCCCCCcccc
Q 002140 105 SIFAYGQTSSGKTYTM 120 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (960)
.+.-.|++|||||+++
T Consensus 6 ~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLL 21 (198)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999886
No 209
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=28.11 E-value=18 Score=34.84 Aligned_cols=16 Identities=31% Similarity=0.436 Sum_probs=13.5
Q ss_pred EEEEeccCCCCCcccc
Q 002140 105 SIFAYGQTSSGKTYTM 120 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (960)
.|+..|.+|||||+..
T Consensus 7 ~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVG 22 (185)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999754
No 210
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=28.05 E-value=22 Score=43.73 Aligned_cols=35 Identities=31% Similarity=0.531 Sum_probs=26.7
Q ss_pred EEEEeccCCCCCcccc-----------------------CCCchhhHHHHHHHHHhcc
Q 002140 105 SIFAYGQTSSGKTYTM-----------------------TGITECTVADIFDYIHRHE 139 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM-----------------------~GIi~ral~dLF~~I~~~~ 139 (960)
.|+-||+.|+|||+.. .|-.+..+..+|.......
T Consensus 513 gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~ 570 (806)
T 3cf2_A 513 GVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAA 570 (806)
T ss_dssp CCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTC
T ss_pred eEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcC
Confidence 5789999999999765 2455677888888876543
No 211
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=28.00 E-value=29 Score=41.82 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=28.0
Q ss_pred ecceeeCCCCChHHHHhhcHHHHHHHHhCCCCEEEEEeccCCCCCccccCC
Q 002140 72 TFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 72 ~FD~VF~~~atQeeVye~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~G 122 (960)
.||.|.+. ++.. ..++..+..+....++-||++|+|||....+
T Consensus 178 ~ld~iiG~----~~~i----~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~ 220 (758)
T 3pxi_A 178 SLDPVIGR----SKEI----QRVIEVLSRRTKNNPVLIGEPGVGKTAIAEG 220 (758)
T ss_dssp CSCCCCCC----HHHH----HHHHHHHHCSSSCEEEEESCTTTTTHHHHHH
T ss_pred CCCCccCc----hHHH----HHHHHHHhCCCCCCeEEECCCCCCHHHHHHH
Confidence 46666654 3333 3344444456666688999999999987654
No 212
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=27.92 E-value=1.9e+02 Score=22.61 Aligned_cols=16 Identities=50% Similarity=0.654 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHh
Q 002140 361 LVKHLQKELARLESEL 376 (960)
Q Consensus 361 lik~Lq~Ei~~Le~eL 376 (960)
++.+|..|++.|+.+-
T Consensus 4 lvaqlenevaslenen 19 (49)
T 3he5_A 4 LVAQLENEVASLENEN 19 (49)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccc
Confidence 6778888888888764
No 213
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=27.78 E-value=24 Score=40.64 Aligned_cols=19 Identities=26% Similarity=0.358 Sum_probs=15.9
Q ss_pred CEEEEEeccCCCCCccccC
Q 002140 103 NSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~ 121 (960)
...++-||++|+|||++..
T Consensus 77 ~~~lLL~GppGtGKTtla~ 95 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAH 95 (516)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3578889999999998863
No 214
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=27.76 E-value=30 Score=42.46 Aligned_cols=17 Identities=35% Similarity=0.378 Sum_probs=15.4
Q ss_pred EEEEEeccCCCCCcccc
Q 002140 104 SSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (960)
+.|+-||++|+|||++.
T Consensus 589 ~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEEBSCSSSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 68999999999999875
No 215
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=27.75 E-value=63 Score=36.46 Aligned_cols=14 Identities=29% Similarity=0.413 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHh
Q 002140 363 KHLQKELARLESEL 376 (960)
Q Consensus 363 k~Lq~Ei~~Le~eL 376 (960)
..||++|.+++.-+
T Consensus 400 ~~~~~~~~~~~~~~ 413 (471)
T 3mq9_A 400 HLLQQELTEAQKGF 413 (471)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhH
Confidence 34666666666544
No 216
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=27.66 E-value=21 Score=35.77 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=18.1
Q ss_pred HHHHhCC-C--CEEEEEeccCCCCCcccc
Q 002140 95 ALSVVSG-I--NSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 95 V~svL~G-~--N~tIfAYGqTGSGKTyTM 120 (960)
++.++.| + ...+.-+|++|+|||..+
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~ 40 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFS 40 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHH
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHH
Confidence 4555433 2 346777899999999875
No 217
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=27.58 E-value=19 Score=34.42 Aligned_cols=17 Identities=29% Similarity=0.384 Sum_probs=14.3
Q ss_pred EEEEEeccCCCCCcccc
Q 002140 104 SSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (960)
..|+-.|.+|||||+..
T Consensus 4 ~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35888999999999865
No 218
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=27.47 E-value=16 Score=36.25 Aligned_cols=15 Identities=33% Similarity=0.463 Sum_probs=12.6
Q ss_pred EEEeccCCCCCcccc
Q 002140 106 IFAYGQTSSGKTYTM 120 (960)
Q Consensus 106 IfAYGqTGSGKTyTM 120 (960)
+.-.|+.|||||+.+
T Consensus 3 i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 3 IIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456899999999876
No 219
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=27.36 E-value=25 Score=42.32 Aligned_cols=45 Identities=13% Similarity=0.172 Sum_probs=28.9
Q ss_pred ecceeeCCCCChHHHHhhcHHHHHHHHhCCCCEEEEEeccCCCCCccccCCCc
Q 002140 72 TFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGIT 124 (960)
Q Consensus 72 ~FD~VF~~~atQeeVye~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM~GIi 124 (960)
.||.|.+. +.. ...++..+.......++-||++|+|||+.+.++.
T Consensus 184 ~~d~~iGr----~~~----i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la 228 (758)
T 1r6b_X 184 GIDPLIGR----EKE----LERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLA 228 (758)
T ss_dssp CSCCCCSC----HHH----HHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCccCC----HHH----HHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHH
Confidence 46666653 333 3334444455555667889999999999876543
No 220
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=27.32 E-value=2.4e+02 Score=25.10 Aligned_cols=66 Identities=20% Similarity=0.280 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 002140 363 KHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGC 429 (960)
Q Consensus 363 k~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~~k~~~i~~le~ei~el~~q~d~~q~r~~~l~~~~~~ 429 (960)
..+..-+..|+..+-...+. .-.+....|..--..|+.|+.+...+..+.+.++.+.+.|.+.+..
T Consensus 19 ~~ln~~f~~Lr~~vP~~~~~-~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~ 84 (88)
T 1nkp_A 19 NELKRSFFALRDQIPELENN-EKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQ 84 (88)
T ss_dssp HHHHHHHHHHHTTCGGGTTC-TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666655432211 1234466777777778888888777777777777777777766643
No 221
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=27.29 E-value=17 Score=35.51 Aligned_cols=16 Identities=25% Similarity=0.237 Sum_probs=13.2
Q ss_pred EEEEeccCCCCCcccc
Q 002140 105 SIFAYGQTSSGKTYTM 120 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (960)
.|.-.|++|||||+.+
T Consensus 8 ~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVR 23 (207)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667799999999765
No 222
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=27.10 E-value=21 Score=43.78 Aligned_cols=52 Identities=19% Similarity=0.170 Sum_probs=34.6
Q ss_pred ceeecceeeCCCCChHHHHhhcHHHHHH-HHhC----CCCEEEEEeccCCCCCcccc
Q 002140 69 SAYTFDRVFWGDCSTTQVYEDGAKEIAL-SVVS----GINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 69 ~~F~FD~VF~~~atQeeVye~~v~plV~-svL~----G~N~tIfAYGqTGSGKTyTM 120 (960)
..++||.|.+.+..-+.+.+.+..|+.. .++. .....|+-||++|||||+.+
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 3578888888776666666655544432 2222 22346889999999999865
No 223
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=26.94 E-value=17 Score=36.44 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=13.7
Q ss_pred EEEEeccCCCCCccccC
Q 002140 105 SIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM~ 121 (960)
.+.-.|++|||||+.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 45558999999998874
No 224
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=26.89 E-value=27 Score=43.96 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=17.6
Q ss_pred HHHHhCCCCEEEEEeccCCCCCccc
Q 002140 95 ALSVVSGINSSIFAYGQTSSGKTYT 119 (960)
Q Consensus 95 V~svL~G~N~tIfAYGqTGSGKTyT 119 (960)
+..+++|.+ ++..|+||||||.+
T Consensus 48 I~~il~g~~--vlv~apTGsGKTlv 70 (997)
T 4a4z_A 48 VYHLEQGDS--VFVAAHTSAGKTVV 70 (997)
T ss_dssp HHHHHTTCE--EEEECCTTSCSHHH
T ss_pred HHHHHcCCC--EEEEECCCCcHHHH
Confidence 445677764 67789999999964
No 225
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=26.88 E-value=18 Score=39.11 Aligned_cols=17 Identities=29% Similarity=0.458 Sum_probs=14.0
Q ss_pred EEEEEeccCCCCCcccc
Q 002140 104 SSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (960)
..|.-.|++|||||+++
T Consensus 103 ~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 35666799999999987
No 226
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=26.76 E-value=15 Score=45.02 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=18.8
Q ss_pred HHHHhCCCCEEEEEeccCCCCCccccCCC
Q 002140 95 ALSVVSGINSSIFAYGQTSSGKTYTMTGI 123 (960)
Q Consensus 95 V~svL~G~N~tIfAYGqTGSGKTyTM~GI 123 (960)
|..++.+ ..++..|+.|||||+|+..+
T Consensus 365 v~~~l~~--~~~lI~GppGTGKT~ti~~~ 391 (800)
T 2wjy_A 365 VKTVLQR--PLSLIQGPPGTGKTVTSATI 391 (800)
T ss_dssp HHHHHTS--SEEEEECCTTSCHHHHHHHH
T ss_pred HHHhccC--CeEEEEcCCCCCHHHHHHHH
Confidence 3444443 34567899999999997653
No 227
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=26.70 E-value=20 Score=36.17 Aligned_cols=16 Identities=19% Similarity=0.208 Sum_probs=9.0
Q ss_pred EEEEeccCCCCCcccc
Q 002140 105 SIFAYGQTSSGKTYTM 120 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (960)
.|.-.|++|||||+++
T Consensus 29 ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EEEEECSCC----CHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3455799999999876
No 228
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=26.60 E-value=16 Score=38.28 Aligned_cols=19 Identities=32% Similarity=0.447 Sum_probs=16.6
Q ss_pred EEEEEeccCCCCCccccCC
Q 002140 104 SSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 104 ~tIfAYGqTGSGKTyTM~G 122 (960)
..||..|..|+||||+|..
T Consensus 7 l~I~~~~kgGvGKTt~a~~ 25 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQ 25 (228)
T ss_dssp EEEEEESSTTSSHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHH
Confidence 5689999999999999854
No 229
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=26.57 E-value=30 Score=38.43 Aligned_cols=17 Identities=29% Similarity=0.489 Sum_probs=14.6
Q ss_pred EEEEEeccCCCCCcccc
Q 002140 104 SSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (960)
..|.-.|++|||||+|+
T Consensus 158 ~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 46777899999999987
No 230
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=26.48 E-value=77 Score=28.68 Aligned_cols=61 Identities=16% Similarity=0.224 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002140 360 ALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLL 424 (960)
Q Consensus 360 ~lik~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~~k~~~i~~le~ei~el~~q~d~~q~r~~~l~ 424 (960)
.-|+.|..+.+.|+.++....... ....-..-+.+|..|..++..+..++..++.++..|.
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~~~~----~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~ 83 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLKGQG----KSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLA 83 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777777776654321110 0111111234455555555555555555555554443
No 231
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=26.44 E-value=17 Score=44.68 Aligned_cols=19 Identities=32% Similarity=0.349 Sum_probs=15.5
Q ss_pred EEEEeccCCCCCccccCCC
Q 002140 105 SIFAYGQTSSGKTYTMTGI 123 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM~GI 123 (960)
.++..|+.|||||+|+..+
T Consensus 377 ~~lI~GppGTGKT~~i~~~ 395 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATI 395 (802)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHH
Confidence 4567899999999997653
No 232
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=26.35 E-value=18 Score=35.11 Aligned_cols=16 Identities=25% Similarity=0.270 Sum_probs=13.3
Q ss_pred EEEEeccCCCCCcccc
Q 002140 105 SIFAYGQTSSGKTYTM 120 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (960)
.+.-.|+.|||||+++
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4566799999999876
No 233
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=25.79 E-value=20 Score=34.57 Aligned_cols=16 Identities=31% Similarity=0.324 Sum_probs=13.7
Q ss_pred EEEEeccCCCCCcccc
Q 002140 105 SIFAYGQTSSGKTYTM 120 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (960)
.|+..|.+|||||+..
T Consensus 13 ~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 13 NILLTGTPGVGKTTLG 28 (180)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEEeCCCCCHHHHH
Confidence 4778999999999865
No 234
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=25.66 E-value=18 Score=41.88 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=18.1
Q ss_pred HHHHHhCCCCEEEEEeccCCCCCcccc
Q 002140 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 94 lV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
++..+++|.++ +..++||+|||.+.
T Consensus 33 ~i~~il~g~d~--lv~apTGsGKTl~~ 57 (523)
T 1oyw_A 33 IIDTVLSGRDC--LVVMPTGGGKSLCY 57 (523)
T ss_dssp HHHHHHTTCCE--EEECSCHHHHHHHH
T ss_pred HHHHHHcCCCE--EEECCCCcHHHHHH
Confidence 34556788875 45679999999753
No 235
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=25.61 E-value=19 Score=35.86 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=14.0
Q ss_pred HhCCCCEEEEEeccCCCCCcccc
Q 002140 98 VVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 98 vL~G~N~tIfAYGqTGSGKTyTM 120 (960)
+-.|- .+.-.|++|||||+++
T Consensus 17 i~~Ge--i~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 17 AAVGR--VVVLSGPSAVGKSTVV 37 (207)
T ss_dssp --CCC--EEEEECSTTSSHHHHH
T ss_pred CCCCC--EEEEECCCCCCHHHHH
Confidence 33444 3445699999999876
No 236
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=25.57 E-value=2.6e+02 Score=24.68 Aligned_cols=56 Identities=21% Similarity=0.226 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002140 360 ALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLR 425 (960)
Q Consensus 360 ~lik~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~~k~~~i~~le~ei~el~~q~d~~q~r~~~l~~ 425 (960)
..|..|..+++.|+.+|..+..-.. ++ . ++..+..++.++..+++.+..|...|..
T Consensus 29 ~~Ie~LE~~i~~le~~ladp~~y~~--d~-~-------~~~~l~~~l~~~e~eLe~~~erWeeLe~ 84 (89)
T 2lw1_A 29 QLLEDLEAKLEALQTQVADASFFSQ--PH-E-------QTQKVLADMAAAEQELEQAFERWEYLEA 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTGGGS--CH-H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccccC--CH-H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577778888888888866543211 11 1 2334445555555555555555555544
No 237
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=25.31 E-value=29 Score=42.13 Aligned_cols=25 Identities=32% Similarity=0.504 Sum_probs=18.4
Q ss_pred HHHHHhCCCCEEEEEeccCCCCCcccc
Q 002140 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 94 lV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
.+..++.|.| ++..++||||||.+.
T Consensus 256 ~i~~~l~~~~--~ll~~~TGsGKTl~~ 280 (797)
T 4a2q_A 256 LAQPAINGKN--ALICAPTGSGKTFVS 280 (797)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHhCCC--EEEEeCCCChHHHHH
Confidence 3445678877 456789999999764
No 238
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=25.30 E-value=12 Score=37.97 Aligned_cols=19 Identities=21% Similarity=0.141 Sum_probs=16.0
Q ss_pred EEEEeccCCCCCccccCCC
Q 002140 105 SIFAYGQTSSGKTYTMTGI 123 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM~GI 123 (960)
.++-||..|||||..+.++
T Consensus 10 i~v~~G~mgsGKTT~ll~~ 28 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRR 28 (191)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 6778999999999887664
No 239
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=24.99 E-value=1.5e+02 Score=34.08 Aligned_cols=37 Identities=19% Similarity=0.327 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcc
Q 002140 399 IQKMEREIRELTKQRDLAQSRVEDLLRMVGCDQDSRQ 435 (960)
Q Consensus 399 i~~le~ei~el~~q~d~~q~r~~~l~~~~~~~~~~~~ 435 (960)
++..++.+.+++++...+.+++.+|.+.+.++-+.++
T Consensus 553 ~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~~~~ 589 (597)
T 3oja_B 553 LDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDTRR 589 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 3444555666666666677777777777777655544
No 240
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=24.90 E-value=35 Score=36.55 Aligned_cols=37 Identities=27% Similarity=0.138 Sum_probs=22.3
Q ss_pred HHHHhhcHHHHHHHHh--CCCCEEEEEeccCCCCCcccc
Q 002140 84 TQVYEDGAKEIALSVV--SGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 84 eeVye~~v~plV~svL--~G~N~tIfAYGqTGSGKTyTM 120 (960)
+.+++.++..+..... .+-...|.-.|.+|||||+.+
T Consensus 10 ~~~~~~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 10 DYTIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp HHHHHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHH
T ss_pred HHHHHHHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHH
Confidence 3455554444443222 244456777799999999865
No 241
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=24.79 E-value=28 Score=34.35 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=15.5
Q ss_pred CCCEEEEEeccCCCCCcccc
Q 002140 101 GINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 101 G~N~tIfAYGqTGSGKTyTM 120 (960)
.-...|.-.|.+|||||+.+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34456777899999999765
No 242
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=24.65 E-value=20 Score=41.87 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=16.3
Q ss_pred CCEEEEEeccCCCCCccccC
Q 002140 102 INSSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 102 ~N~tIfAYGqTGSGKTyTM~ 121 (960)
.++.++..|..|||||+|+.
T Consensus 21 ~~~~~lV~a~aGsGKT~~l~ 40 (647)
T 3lfu_A 21 PRSNLLVLAGAGSGKTRVLV 40 (647)
T ss_dssp CSSCEEEEECTTSCHHHHHH
T ss_pred CCCCEEEEECCCCCHHHHHH
Confidence 35567888999999999974
No 243
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=24.60 E-value=2.2e+02 Score=26.96 Aligned_cols=27 Identities=33% Similarity=0.461 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002140 399 IQKMEREIRELTKQRDLAQSRVEDLLR 425 (960)
Q Consensus 399 i~~le~ei~el~~q~d~~q~r~~~l~~ 425 (960)
++.|+.||..|..++..+..+++.|.+
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~ 99 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRR 99 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444333
No 244
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=24.59 E-value=3.1e+02 Score=24.71 Aligned_cols=39 Identities=13% Similarity=0.236 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002140 390 ALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVG 428 (960)
Q Consensus 390 ~~l~~k~~~i~~le~ei~el~~q~d~~q~r~~~l~~~~~ 428 (960)
..+.....++..+..++.++..++..+..+++.+...+.
T Consensus 64 ~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 64 ELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667777777788887777777777777776665
No 245
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=24.43 E-value=23 Score=36.57 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=15.3
Q ss_pred EEEEeccCCCCCcccc---CCCch
Q 002140 105 SIFAYGQTSSGKTYTM---TGITE 125 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM---~GIi~ 125 (960)
.+.-.|++|||||+.+ .|+++
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 3456799999999876 46543
No 246
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=24.37 E-value=2.3e+02 Score=29.64 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002140 398 QIQKMEREIRELTKQRDLAQSR 419 (960)
Q Consensus 398 ~i~~le~ei~el~~q~d~~q~r 419 (960)
.+..+++++.++..+++.++..
T Consensus 105 ~i~~lE~eile~~e~ie~~~~~ 126 (256)
T 3na7_A 105 RSNQANREIENLQNEIKRKSEK 126 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433333
No 247
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=24.09 E-value=29 Score=43.14 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=18.1
Q ss_pred HHHHhCCCCEEEEEeccCCCCCcccc
Q 002140 95 ALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 95 V~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
+..++.|.|+ +..++||||||.+.
T Consensus 257 i~~il~g~~~--ll~a~TGsGKTl~~ 280 (936)
T 4a2w_A 257 AQPAINGKNA--LICAPTGSGKTFVS 280 (936)
T ss_dssp HHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHcCCCE--EEEeCCCchHHHHH
Confidence 4455788874 56789999999874
No 248
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=23.91 E-value=1.1e+02 Score=29.11 Aligned_cols=34 Identities=6% Similarity=0.141 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002140 394 KKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMV 427 (960)
Q Consensus 394 ~k~~~i~~le~ei~el~~q~d~~q~r~~~l~~~~ 427 (960)
+...+|..|..++++...+.+.+....+.+.-.+
T Consensus 75 eLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 75 ELEGEITTLNHKLQDASAEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHh
Confidence 3344444444444444444444444444444433
No 249
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=23.83 E-value=27 Score=42.82 Aligned_cols=27 Identities=26% Similarity=0.258 Sum_probs=19.5
Q ss_pred HHHHHhCCCCEEEEEeccCCCCCcccc
Q 002140 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 94 lV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
+...+-.|....++..|+||||||...
T Consensus 380 I~~~l~~~~~~~~Ll~a~TGSGKTlva 406 (780)
T 1gm5_A 380 IRNDMISEKPMNRLLQGDVGSGKTVVA 406 (780)
T ss_dssp HHHHHHSSSCCCCEEECCSSSSHHHHH
T ss_pred HHhhccccCCCcEEEEcCCCCCHHHHH
Confidence 344444566566788999999999764
No 250
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=23.64 E-value=28 Score=39.03 Aligned_cols=16 Identities=19% Similarity=0.079 Sum_probs=13.6
Q ss_pred EEEEeccCCCCCcccc
Q 002140 105 SIFAYGQTSSGKTYTM 120 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (960)
.++..|+||||||...
T Consensus 4 ~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRV 19 (431)
T ss_dssp EEEEECCTTSCTTTTH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4678899999999874
No 251
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=23.56 E-value=23 Score=33.96 Aligned_cols=16 Identities=19% Similarity=0.260 Sum_probs=13.5
Q ss_pred EEEEeccCCCCCcccc
Q 002140 105 SIFAYGQTSSGKTYTM 120 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (960)
.|+-.|..|||||+..
T Consensus 5 ~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSS 20 (192)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999854
No 252
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=23.50 E-value=21 Score=38.44 Aligned_cols=17 Identities=41% Similarity=0.651 Sum_probs=14.1
Q ss_pred EEEEeccCCCCCccccC
Q 002140 105 SIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM~ 121 (960)
.|...|++|+|||+|+.
T Consensus 107 vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56667999999999974
No 253
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=23.49 E-value=24 Score=34.76 Aligned_cols=16 Identities=38% Similarity=0.399 Sum_probs=13.7
Q ss_pred EEEEeccCCCCCcccc
Q 002140 105 SIFAYGQTSSGKTYTM 120 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (960)
.|+-.|.+|||||+..
T Consensus 27 ~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLG 42 (199)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5778899999999875
No 254
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=23.49 E-value=18 Score=39.47 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=16.0
Q ss_pred HHhCCCCEEEEEeccCCCCCcccc
Q 002140 97 SVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 97 svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
.+-.|.+ +.-.|+||||||+++
T Consensus 167 ~i~~g~~--v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 167 GIAIGKN--VIVCGGTGSGKTTYI 188 (330)
T ss_dssp HHHHTCC--EEEEESTTSCHHHHH
T ss_pred hccCCCE--EEEECCCCCCHHHHH
Confidence 3445664 445699999999887
No 255
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=23.27 E-value=23 Score=33.58 Aligned_cols=16 Identities=31% Similarity=0.463 Sum_probs=13.5
Q ss_pred EEEEeccCCCCCcccc
Q 002140 105 SIFAYGQTSSGKTYTM 120 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (960)
.|.-.|..|||||+..
T Consensus 6 ~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4777899999999865
No 256
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=23.22 E-value=38 Score=41.01 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=19.6
Q ss_pred CCCCEEEEEeccCCCCCcccc
Q 002140 100 SGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM 120 (960)
.+.|-||+.-|.+|||||.+.
T Consensus 91 ~~~nQsIiisGESGAGKTe~t 111 (697)
T 1lkx_A 91 SQENQCVIISGESGAGKTEAS 111 (697)
T ss_dssp HCCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEecCCCCCCchhhH
Confidence 699999999999999999874
No 257
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=23.22 E-value=26 Score=32.94 Aligned_cols=16 Identities=19% Similarity=0.054 Sum_probs=13.2
Q ss_pred EEEEeccCCCCCcccc
Q 002140 105 SIFAYGQTSSGKTYTM 120 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (960)
.|+-.|..|||||+..
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999764
No 258
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=22.87 E-value=25 Score=36.51 Aligned_cols=15 Identities=47% Similarity=0.552 Sum_probs=12.7
Q ss_pred EEEEeccCCCCCccc
Q 002140 105 SIFAYGQTSSGKTYT 119 (960)
Q Consensus 105 tIfAYGqTGSGKTyT 119 (960)
.|+-.|++|||||+.
T Consensus 3 li~I~G~~GSGKSTl 17 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 467889999999874
No 259
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=22.79 E-value=1.2e+02 Score=25.54 Aligned_cols=34 Identities=24% Similarity=0.405 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002140 395 KDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVG 428 (960)
Q Consensus 395 k~~~i~~le~ei~el~~q~d~~q~r~~~l~~~~~ 428 (960)
+...+..|+.++.+|+.+...+..++..|...++
T Consensus 28 K~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 28 KLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456777888888888888888888887776654
No 260
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=22.79 E-value=2e+02 Score=23.65 Aligned_cols=31 Identities=13% Similarity=0.221 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002140 397 LQIQKMEREIRELTKQRDLAQSRVEDLLRMV 427 (960)
Q Consensus 397 ~~i~~le~ei~el~~q~d~~q~r~~~l~~~~ 427 (960)
.+...|+.++.+|..+...++.++..|...+
T Consensus 29 ~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 29 KKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555556666666666666665555443
No 261
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=22.70 E-value=29 Score=36.37 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=15.1
Q ss_pred EEEEEeccCCCCCcccc
Q 002140 104 SSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (960)
..++-||+.|+|||..+
T Consensus 32 ~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcCCHHHHH
Confidence 57888999999999876
No 262
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=22.70 E-value=30 Score=40.73 Aligned_cols=27 Identities=15% Similarity=0.203 Sum_probs=18.7
Q ss_pred HHHHhCCCCEEEEEeccCCCCCccccCCC
Q 002140 95 ALSVVSGINSSIFAYGQTSSGKTYTMTGI 123 (960)
Q Consensus 95 V~svL~G~N~tIfAYGqTGSGKTyTM~GI 123 (960)
+..++.+ ..++..|..|||||+++..+
T Consensus 198 v~~~~~~--~~~~I~G~pGTGKTt~i~~l 224 (574)
T 3e1s_A 198 LDQLAGH--RLVVLTGGPGTGKSTTTKAV 224 (574)
T ss_dssp HHHHTTC--SEEEEECCTTSCHHHHHHHH
T ss_pred HHHHHhC--CEEEEEcCCCCCHHHHHHHH
Confidence 3344443 45667899999999997543
No 263
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=22.60 E-value=20 Score=36.23 Aligned_cols=15 Identities=20% Similarity=0.377 Sum_probs=12.2
Q ss_pred EEEeccCCCCCcccc
Q 002140 106 IFAYGQTSSGKTYTM 120 (960)
Q Consensus 106 IfAYGqTGSGKTyTM 120 (960)
+.-.|++|||||+.+
T Consensus 26 ~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 26 LVICGPSGVGKGTLI 40 (218)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 345699999999876
No 264
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=22.56 E-value=22 Score=34.15 Aligned_cols=16 Identities=25% Similarity=0.162 Sum_probs=13.3
Q ss_pred EEEEeccCCCCCcccc
Q 002140 105 SIFAYGQTSSGKTYTM 120 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (960)
...-+|++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4567899999999876
No 265
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=22.51 E-value=24 Score=39.87 Aligned_cols=21 Identities=14% Similarity=0.037 Sum_probs=15.5
Q ss_pred HhCCCCEEEEEeccCCCCCcccc
Q 002140 98 VVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 98 vL~G~N~tIfAYGqTGSGKTyTM 120 (960)
++.|.+ ++..|+||||||.+.
T Consensus 125 ~~~~~~--~ll~~~tGsGKT~~~ 145 (510)
T 2oca_A 125 GLVNRR--RILNLPTSAGRSLIQ 145 (510)
T ss_dssp HHHHSE--EEEECCSTTTHHHHH
T ss_pred HHhcCC--cEEEeCCCCCHHHHH
Confidence 344544 466799999999886
No 266
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=22.39 E-value=1.6e+02 Score=37.38 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=19.5
Q ss_pred CCCCEEEEEeccCCCCCcccc
Q 002140 100 SGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM 120 (960)
++.|-||+.-|.+|||||.+.
T Consensus 153 ~~~~QsIiisGESGAGKTe~~ 173 (1080)
T 2dfs_A 153 DERNQSIIVSGESGAGKTVSA 173 (1080)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEcCCCCCCccchH
Confidence 699999999999999999775
No 267
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=22.24 E-value=22 Score=35.59 Aligned_cols=16 Identities=31% Similarity=0.507 Sum_probs=13.4
Q ss_pred EEEEeccCCCCCcccc
Q 002140 105 SIFAYGQTSSGKTYTM 120 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (960)
.+.-.|++|+|||+++
T Consensus 3 ~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CEEEESCCSSCHHHHH
T ss_pred EEEEECCCCChHHHHH
Confidence 3566799999999886
No 268
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=21.99 E-value=25 Score=33.62 Aligned_cols=17 Identities=24% Similarity=0.268 Sum_probs=14.0
Q ss_pred EEEEEeccCCCCCcccc
Q 002140 104 SSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (960)
..|+-.|..|||||+.+
T Consensus 9 ~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp EEEEEECSTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 35777899999999864
No 269
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=21.97 E-value=4.6e+02 Score=25.66 Aligned_cols=64 Identities=14% Similarity=0.146 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 002140 366 QKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGCDQ 431 (960)
Q Consensus 366 q~Ei~~Le~eL~~~~~~~~~~~~~~~l~~k~~~i~~le~ei~el~~q~d~~q~r~~~l~~~~~~~~ 431 (960)
.++|..|-..|-... .+..+-...+++.+.+.+..++++++..++.+.+-.+++++...+.+..
T Consensus 70 akqIe~LIdsLPg~~--~seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~~ia~~~ 133 (151)
T 1yke_B 70 TRQINKLIDSLPGVD--VSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIEDFVDGI 133 (151)
T ss_dssp HHHHHHHHHHCTTSS--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHhCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666663322 2222234445555556666666666666666777777777777666654
No 270
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=21.86 E-value=35 Score=39.78 Aligned_cols=17 Identities=35% Similarity=0.409 Sum_probs=14.4
Q ss_pred EEEEEeccCCCCCcccc
Q 002140 104 SSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (960)
..|.-.|++|||||+++
T Consensus 294 eVI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCcccHHHHH
Confidence 35677899999999987
No 271
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=21.76 E-value=2.3e+02 Score=31.24 Aligned_cols=51 Identities=22% Similarity=0.182 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002140 362 VKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVG 428 (960)
Q Consensus 362 ik~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~~k~~~i~~le~ei~el~~q~d~~q~r~~~l~~~~~ 428 (960)
+..|..|+.+|+..+ ...+.+|+.|+..+..++.+++.+++++.+|...+.
T Consensus 7 ~~~~~~~~~~~e~~i----------------~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~~ 57 (323)
T 1lwu_C 7 VQKILEEVRILEQIG----------------VSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCS 57 (323)
T ss_dssp HHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH----------------hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666666665433 234566777777777777777777777776665543
No 272
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=21.73 E-value=25 Score=36.77 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=17.1
Q ss_pred hCCCCEEEEEeccCCCCCcccc
Q 002140 99 VSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 99 L~G~N~tIfAYGqTGSGKTyTM 120 (960)
-.|+...|...|.+|+|||..+
T Consensus 4 ~~g~~~~I~vvG~~g~GKSTLi 25 (274)
T 3t5d_A 4 GSGFEFTLMVVGESGLGKSTLI 25 (274)
T ss_dssp ---CEEEEEEEECTTSSHHHHH
T ss_pred cCccEEEEEEECCCCCCHHHHH
Confidence 3688999999999999999654
No 273
>1jr5_A 10 kDa anti-sigma factor; all-alpha, helix-turn-helix, coiled-coil, transcription; NMR {Enterobacteria phage T4} SCOP: a.150.1.1 PDB: 1tkv_A 1tl6_A 1tlh_A
Probab=21.73 E-value=61 Score=29.34 Aligned_cols=33 Identities=15% Similarity=0.378 Sum_probs=29.0
Q ss_pred HHHHHhhCCHHHHHHHHHhhCCCCCcccchhhh
Q 002140 865 SKLMRRRLSADERNKLYQKWGIGLNSKRRRLQL 897 (960)
Q Consensus 865 ~~~~~~~l~~~ere~ly~kw~i~l~~k~r~lql 897 (960)
.++|-++||.+||+.|...+..+...=.|+|-.
T Consensus 54 fr~m~~~lt~~ek~elieeFn~G~e~iyr~l~M 86 (90)
T 1jr5_A 54 FRKIVSELTQEDKKTLIDEFNEGFEGVYRYLEM 86 (90)
T ss_dssp HHHHHHTCCHHHHHHHHTTSSSSSTTTTTHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHhccchHHHHHHHH
Confidence 467999999999999999999998888888753
No 274
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=21.71 E-value=43 Score=41.09 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=19.6
Q ss_pred CCCCEEEEEeccCCCCCcccc
Q 002140 100 SGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM 120 (960)
++.|-||+.-|.+|+|||.+.
T Consensus 169 ~~~nQsIiisGESGAGKTe~t 189 (770)
T 1w9i_A 169 DRQNQSLLITGESGAGKTENT 189 (770)
T ss_dssp HCCCEEEEEECSTTSSHHHHH
T ss_pred hcCCcEEEEecCCCCcchHHH
Confidence 699999999999999999874
No 275
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=21.69 E-value=59 Score=37.10 Aligned_cols=20 Identities=35% Similarity=0.260 Sum_probs=15.6
Q ss_pred CEEEEEeccCCCCCccccCC
Q 002140 103 NSSIFAYGQTSSGKTYTMTG 122 (960)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~G 122 (960)
...|+..|.+|+|||+|+..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~k 116 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGK 116 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 35666679999999999743
No 276
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=21.59 E-value=2.2e+02 Score=23.82 Aligned_cols=31 Identities=13% Similarity=0.262 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002140 397 LQIQKMEREIRELTKQRDLAQSRVEDLLRMV 427 (960)
Q Consensus 397 ~~i~~le~ei~el~~q~d~~q~r~~~l~~~~ 427 (960)
.+.+.|+.++.+|..+.+.++.+++.|...+
T Consensus 30 ~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 30 GECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555554443
No 277
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=21.51 E-value=32 Score=33.33 Aligned_cols=21 Identities=24% Similarity=0.120 Sum_probs=16.1
Q ss_pred CCCCEEEEEeccCCCCCcccc
Q 002140 100 SGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM 120 (960)
.+..-.|.-.|.+|||||+..
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVA 25 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHH
T ss_pred ccCceEEEEECCCCCCHHHHH
Confidence 344567888999999999764
No 278
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=21.47 E-value=4.4e+02 Score=25.23 Aligned_cols=69 Identities=25% Similarity=0.409 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCchhH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 002140 359 KALVKHLQKELARLESELRSPAPASSTCDY---------VALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGC 429 (960)
Q Consensus 359 ~~lik~Lq~Ei~~Le~eL~~~~~~~~~~~~---------~~~l~~k~~~i~~le~ei~el~~q~d~~q~r~~~l~~~~~~ 429 (960)
..-+..+++++++|+..+.......+. +| ...+..+..++.++ .+|+..++.++.++..+...+..
T Consensus 12 ~~KvAElekkv~~lek~lk~~~e~d~e-~y~ke~~~~~~qsele~k~aeLe~l----eeL~~ki~eL~~kvA~le~e~~~ 86 (125)
T 2pms_C 12 QAKIAELENQVHRLEQELKEIDESESE-DYAKEGFRAPLQSKLDAKKAKLSKL----EELSDKIDELDAEIAKLEDQLKA 86 (125)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCC-------------CHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhhh-HHHHHHHhHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHH
Confidence 445778999999999999887765432 22 12233333334333 67888888888888888888876
Q ss_pred CCC
Q 002140 430 DQD 432 (960)
Q Consensus 430 ~~~ 432 (960)
-..
T Consensus 87 ~e~ 89 (125)
T 2pms_C 87 AEE 89 (125)
T ss_dssp CCC
T ss_pred HHh
Confidence 543
No 279
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=21.37 E-value=43 Score=41.10 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=19.6
Q ss_pred CCCCEEEEEeccCCCCCcccc
Q 002140 100 SGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM 120 (960)
.+.|.||+.-|.+|||||.+.
T Consensus 137 ~~~nQsIiiSGESGAGKTe~t 157 (784)
T 2v26_A 137 LKLSQSIIVSGESGAGKTENT 157 (784)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEcCCCCCCceehH
Confidence 699999999999999999874
No 280
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=21.34 E-value=59 Score=34.91 Aligned_cols=17 Identities=35% Similarity=0.401 Sum_probs=13.8
Q ss_pred EEEEeccCCCCCccccC
Q 002140 105 SIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM~ 121 (960)
.|...|.+|+|||+++.
T Consensus 100 vi~i~G~~G~GKTT~~~ 116 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAG 116 (297)
T ss_dssp EEEEECSSCSSTTHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 55567999999999873
No 281
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=21.21 E-value=2.4e+02 Score=23.46 Aligned_cols=33 Identities=15% Similarity=0.113 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002140 395 KDLQIQKMEREIRELTKQRDLAQSRVEDLLRMV 427 (960)
Q Consensus 395 k~~~i~~le~ei~el~~q~d~~q~r~~~l~~~~ 427 (960)
.+.+...|+.++.+|..++..++.++..|..++
T Consensus 28 Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 28 LQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666666666665544
No 282
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=21.14 E-value=29 Score=33.18 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=13.9
Q ss_pred EEEEEeccCCCCCcccc
Q 002140 104 SSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (960)
..|+-.|..|||||+..
T Consensus 4 ~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788899999999764
No 283
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=21.09 E-value=32 Score=38.78 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=15.8
Q ss_pred HhCCCCEEEEEeccCCCCCcccc
Q 002140 98 VVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 98 vL~G~N~tIfAYGqTGSGKTyTM 120 (960)
+++|.| ++..|+||||||...
T Consensus 5 l~~g~~--vlv~a~TGSGKT~~~ 25 (440)
T 1yks_A 5 LKKGMT--TVLDFHPGAGKTRRF 25 (440)
T ss_dssp TSTTCE--EEECCCTTSSTTTTH
T ss_pred hhCCCC--EEEEcCCCCCHHHHH
Confidence 345655 467789999999884
No 284
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=20.99 E-value=39 Score=42.65 Aligned_cols=23 Identities=26% Similarity=0.174 Sum_probs=17.3
Q ss_pred HHHHHhCCCCEEEEEeccCCCCCcc
Q 002140 94 IALSVVSGINSSIFAYGQTSSGKTY 118 (960)
Q Consensus 94 lV~svL~G~N~tIfAYGqTGSGKTy 118 (960)
.+..+++|.| +++.|+||||||.
T Consensus 64 ai~~il~g~d--vlv~apTGSGKTl 86 (1054)
T 1gku_B 64 WAKRILRKES--FAATAPTGVGKTS 86 (1054)
T ss_dssp HHHHHHTTCC--EECCCCBTSCSHH
T ss_pred HHHHHHhCCC--EEEEcCCCCCHHH
Confidence 3445678876 5677899999994
No 285
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=20.98 E-value=30 Score=35.19 Aligned_cols=29 Identities=21% Similarity=0.362 Sum_probs=23.0
Q ss_pred EEEeccCCCCCcccc------CCCchhhHHHHHHH
Q 002140 106 IFAYGQTSSGKTYTM------TGITECTVADIFDY 134 (960)
Q Consensus 106 IfAYGqTGSGKTyTM------~GIi~ral~dLF~~ 134 (960)
|+-.|+.||||++-. +|+..-...+||..
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~ 37 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILRE 37 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHH
Confidence 678899999998644 58877778888864
No 286
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=20.97 E-value=33 Score=38.83 Aligned_cols=15 Identities=27% Similarity=0.096 Sum_probs=12.6
Q ss_pred EEEEeccCCCCCccc
Q 002140 105 SIFAYGQTSSGKTYT 119 (960)
Q Consensus 105 tIfAYGqTGSGKTyT 119 (960)
.++..|+||||||..
T Consensus 23 ~vlv~a~TGsGKT~~ 37 (459)
T 2z83_A 23 MTVLDLHPGSGKTRK 37 (459)
T ss_dssp EEEECCCTTSCTTTT
T ss_pred cEEEECCCCCCHHHH
Confidence 456779999999987
No 287
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=20.89 E-value=30 Score=33.06 Aligned_cols=16 Identities=31% Similarity=0.401 Sum_probs=13.1
Q ss_pred EEEEeccCCCCCcccc
Q 002140 105 SIFAYGQTSSGKTYTM 120 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (960)
..+-+|++|||||..+
T Consensus 25 ~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3457899999999875
No 288
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=20.80 E-value=37 Score=39.34 Aligned_cols=28 Identities=18% Similarity=0.103 Sum_probs=19.2
Q ss_pred HHHHHHHHhCCCCEEEEEeccCCCCCcccc
Q 002140 91 AKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 91 v~plV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
+..+...+..|.++ ++-.+||||||.+.
T Consensus 12 ~~~v~~~l~~~~~~--~~~a~TGtGKT~~~ 39 (551)
T 3crv_A 12 KDKVIEGLRNNFLV--ALNAPTGSGKTLFS 39 (551)
T ss_dssp HHHHHHHHHTTCEE--EEECCTTSSHHHHH
T ss_pred HHHHHHHHHcCCcE--EEECCCCccHHHHH
Confidence 44455566788655 45568999998765
No 289
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=20.72 E-value=1.9e+02 Score=21.60 Aligned_cols=30 Identities=20% Similarity=0.272 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 002140 400 QKMEREIRELTKQRDLAQSRVEDLLRMVGC 429 (960)
Q Consensus 400 ~~le~ei~el~~q~d~~q~r~~~l~~~~~~ 429 (960)
.+||..+++|......+++++.-|...++.
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~ll~~ 32 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTKLVGE 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 356777788888888888888877777664
No 290
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=20.67 E-value=30 Score=33.18 Aligned_cols=16 Identities=19% Similarity=0.356 Sum_probs=13.6
Q ss_pred EEEEeccCCCCCcccc
Q 002140 105 SIFAYGQTSSGKTYTM 120 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (960)
.|+-.|..|||||+..
T Consensus 6 ~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQA 21 (186)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788899999999864
No 291
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=20.65 E-value=3.4e+02 Score=23.78 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002140 392 LRKKDLQIQKMEREIRELTKQRDLAQSRVEDLL 424 (960)
Q Consensus 392 l~~k~~~i~~le~ei~el~~q~d~~q~r~~~l~ 424 (960)
+......|..++.++.+++.+........++|+
T Consensus 28 ~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~Ll 60 (84)
T 1gk4_A 28 AANYQDTIGRLQDEIQNMKEEMARHLREYQDLL 60 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555566666665555544444444443
No 292
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=20.63 E-value=24 Score=42.21 Aligned_cols=20 Identities=35% Similarity=0.350 Sum_probs=15.1
Q ss_pred hCCCCEEEEEeccCCCCCcccc
Q 002140 99 VSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 99 L~G~N~tIfAYGqTGSGKTyTM 120 (960)
.+|.| ++..|+||||||...
T Consensus 37 ~~~~~--~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 37 LEGKN--ALISIPTASGKTLIA 56 (720)
T ss_dssp GGTCE--EEEECCGGGCHHHHH
T ss_pred cCCCc--EEEEcCCccHHHHHH
Confidence 45544 677899999999764
No 293
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=20.55 E-value=27 Score=33.59 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=14.4
Q ss_pred EEEEEeccCCCCCcccc
Q 002140 104 SSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (960)
..|+..|..|||||+..
T Consensus 6 ~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLS 22 (193)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46888999999999865
No 294
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=20.54 E-value=45 Score=42.66 Aligned_cols=21 Identities=29% Similarity=0.427 Sum_probs=19.6
Q ss_pred CCCCEEEEEeccCCCCCcccc
Q 002140 100 SGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM 120 (960)
.+.|-||+.-|.+|||||.+.
T Consensus 166 ~~~~Q~i~isGeSGaGKTe~~ 186 (1184)
T 1i84_S 166 DREDQSILCTGESGAGKTENT 186 (1184)
T ss_dssp HTCCEEEECCCSTTSSTTHHH
T ss_pred cCCCcEEEEecCCCCCccHHH
Confidence 699999999999999999874
No 295
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=20.40 E-value=29 Score=34.40 Aligned_cols=16 Identities=19% Similarity=0.381 Sum_probs=12.7
Q ss_pred EEEEeccCCCCCcccc
Q 002140 105 SIFAYGQTSSGKTYTM 120 (960)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (960)
.|+-.|++|||||+.+
T Consensus 14 ~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566899999998754
No 296
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=20.31 E-value=30 Score=35.44 Aligned_cols=20 Identities=20% Similarity=0.293 Sum_probs=14.6
Q ss_pred EEEeccCCCCCcccc---CCCch
Q 002140 106 IFAYGQTSSGKTYTM---TGITE 125 (960)
Q Consensus 106 IfAYGqTGSGKTyTM---~GIi~ 125 (960)
+.-.|+.|||||+.+ .|+++
T Consensus 33 ~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 33 VSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp EEEEECTTSCHHHHHHHHTTSSC
T ss_pred EEEECCCCCCHHHHHHHHhcCCC
Confidence 345699999999876 46543
No 297
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=20.22 E-value=33 Score=36.03 Aligned_cols=18 Identities=17% Similarity=0.327 Sum_probs=15.6
Q ss_pred EEEEEeccCCCCCccccC
Q 002140 104 SSIFAYGQTSSGKTYTMT 121 (960)
Q Consensus 104 ~tIfAYGqTGSGKTyTM~ 121 (960)
..++-||+.|+|||..+.
T Consensus 31 ~~v~i~G~~G~GKT~L~~ 48 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIK 48 (357)
T ss_dssp SEEEEEESTTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 488999999999998763
No 298
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=20.19 E-value=45 Score=42.15 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=19.6
Q ss_pred CCCCEEEEEeccCCCCCcccc
Q 002140 100 SGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM 120 (960)
.+.|-||+.-|.+|||||.+.
T Consensus 169 ~~~~QsIiisGESGAGKTe~~ 189 (1010)
T 1g8x_A 169 DRQNQSLLITGESGAGKTENT 189 (1010)
T ss_dssp HTCCEEEEEEESTTSSHHHHH
T ss_pred cCCCeEEEEeCCCCCCcchHH
Confidence 699999999999999999874
No 299
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=20.10 E-value=27 Score=41.66 Aligned_cols=30 Identities=30% Similarity=0.328 Sum_probs=20.7
Q ss_pred CChHHHHhhcHHHHHHHHhCCCCEEEEEeccCCCCCcccc
Q 002140 81 CSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (960)
Q Consensus 81 atQeeVye~~v~plV~svL~G~N~tIfAYGqTGSGKTyTM 120 (960)
.-|.+++.. +++|.| ++..|+||||||...
T Consensus 28 ~~Q~~~i~~--------i~~~~~--~lv~apTGsGKT~~~ 57 (702)
T 2p6r_A 28 PPQAEAVEK--------VFSGKN--LLLAMPTAAGKTLLA 57 (702)
T ss_dssp CCCHHHHHH--------HTTCSC--EEEECSSHHHHHHHH
T ss_pred HHHHHHHHH--------HhCCCc--EEEEcCCccHHHHHH
Confidence 346666644 456666 466789999999764
No 300
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=20.09 E-value=1.3e+02 Score=26.22 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002140 399 IQKMEREIRELTKQRDLAQSRVEDLLR 425 (960)
Q Consensus 399 i~~le~ei~el~~q~d~~q~r~~~l~~ 425 (960)
.++|.+++--+.-+...++.++++|.+
T Consensus 48 ~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 48 TERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 455666776777777777777766653
No 301
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=20.04 E-value=33 Score=26.16 Aligned_cols=31 Identities=29% Similarity=0.505 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002140 398 QIQKMEREIRELTKQRDLAQSRVEDLLRMVG 428 (960)
Q Consensus 398 ~i~~le~ei~el~~q~d~~q~r~~~l~~~~~ 428 (960)
.+..+++.|+.|+.+.|.++.++..+.+.+|
T Consensus 5 ~i~avKkKiq~lq~q~d~aee~~~~~~~~l~ 35 (37)
T 3azd_A 5 SLEAVRRKIRSLQEQNYHLENEVARLKKLVG 35 (37)
T ss_dssp -CHHHHHHHHHHHHHTTTTHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566778889999999999999988887764
Done!