BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002141
(960 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|330370553|gb|AEC12446.1| repressor of gene silencing 1 [Gossypium hirsutum]
Length = 1758
Score = 1183 bits (3061), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 619/996 (62%), Positives = 719/996 (72%), Gaps = 64/996 (6%)
Query: 20 SSAFMSLAANFPLNSKQK-PCHGEEITSVIEEPAEYVLDPEDTIEWKEKMSHQPVCDQGS 78
SSAFMSLAA FP+ SK K + +E TS++ YVL+PE++I+W K + QPV DQ S
Sbjct: 768 SSAFMSLAARFPIKSKSKDKLYHQEGTSLVNGEEFYVLEPEESIKWDAKTAIQPVGDQSS 827
Query: 79 MTLHGSESSEEREVVSSNNSLESSTSVVSSINESKCKLMNSSEIYPETY----------- 127
MT+ G + SEE+EV +S SST+ VSSINE KC L+NSS TY
Sbjct: 828 MTVDGYQDSEEKEVANSEELSGSSTATVSSINEPKCNLLNSSGSGLSTYCDSTANRLNME 887
Query: 128 ---------------NDVLSSPNSL-------DSSFAPFADGTISSSNSNSDAGDSSNVP 165
NDVLSS NS+ D S A+ T S S NS+ D + P
Sbjct: 888 TIRGKTDCFKGDEETNDVLSSQNSVVSSENSGDFSLVQTAERTGSCSEGNSEGADHTKRP 947
Query: 166 TLNSFNGSNSFVELLQMVGSTMLHGNYNHRNGHMSSDENSKDEHSQFQTLESNTQRVKVK 225
N NGS SFV+LLQMVGS LH +H+N MS +E K ++ N QR
Sbjct: 948 IFNILNGSTSFVQLLQMVGSARLHEVQSHQN--MSPNEKLKCQNKPI----PNHQRENCD 1001
Query: 226 DIDDPKVLSRVSSIPPSSFHPCLTQDLSV-EVESYEMRREETRSSGISDVTDKIA----- 279
+ D PK +R +P +++HP LT + V E+ +E +EETR S S D+
Sbjct: 1002 NSDGPKSFTREDLMPSANYHPYLTLNSEVREIGHFETLKEETRVSEASKTIDESMIKRLS 1061
Query: 280 -LMPEFASQTTDATKLI--VAGPEAPRHGNKQSRNSMQANKNSIAQHESELFGDSRFAME 336
L E AS+T D V + N QS + +++ L D+ +E
Sbjct: 1062 PLTQESASRTMDQNDKTRSVQVAQQSSFENFQSSTYTIPVEMTVSHCPKGLLQDTINLVE 1121
Query: 337 PPAHAQKNDL----NLPKISSGSIDAIESHNALYNRENTQLKSSVSDQNKYDHSFSKELN 392
PA AQ ++ ++ K S ++D ES A N+ N Q K S+ +D S +KELN
Sbjct: 1122 SPAEAQNKEMLRHVSMSKHSEETLDITESSTAFDNQRNPQQKMQESNLYTHDSSSNKELN 1181
Query: 393 GIDDATSKSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNK 452
+ KS+ +V KEK++DFDWDSLR+Q E NG K+E+ E T DSLDWEAVRCA+V++
Sbjct: 1182 SMV-GELKSEGRKVKKEKKDDFDWDSLRKQTEVNGRKREKTERTMDSLDWEAVRCAEVHE 1240
Query: 453 IANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSV 512
IA TIKERGMNN+LA RIKDFLNRLVRDHGS+DLEWLRDVPPDKAKEYLLS RGLGLKSV
Sbjct: 1241 IAETIKERGMNNVLAQRIKDFLNRLVRDHGSIDLEWLRDVPPDKAKEYLLSIRGLGLKSV 1300
Query: 513 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRL 572
ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP+LESIQKYLWPRL
Sbjct: 1301 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPILESIQKYLWPRL 1360
Query: 573 CKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKA 632
CKLDQRTLYELHYQMITFGKVFCTK KPNCNACPMRGECRHFASAFAS+RLALPGPEEK+
Sbjct: 1361 CKLDQRTLYELHYQMITFGKVFCTKGKPNCNACPMRGECRHFASAFASARLALPGPEEKS 1420
Query: 633 IVSANENRTNTQNPAMMINQLPLPLTHATDL--------PVGKLEIA--VNNCEPIIEEP 682
IVSA EN T+ +NPA++I+QL LPL + +L L+ A VN C+PIIEEP
Sbjct: 1421 IVSATENGTSDRNPAVIIDQLALPLPQSNELLDRNYQSEANQHLQAASTVNKCDPIIEEP 1480
Query: 683 ATPEPERVQVSENDIEDTFCEDPEEIPTIKLNMKEFTQTLQNYMQENLELQEGDMSKALV 742
A+PEPE QV+ENDIED F EDP+EIPTIKLNM+EFTQTLQNYMQ N+ELQEGDMSKALV
Sbjct: 1481 ASPEPECTQVAENDIEDMFSEDPDEIPTIKLNMEEFTQTLQNYMQNNIELQEGDMSKALV 1540
Query: 743 ALTAGAASIPAPKLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGET 802
ALTA AASIP P+LKNV+RLRTEHQVYELPDSHPLL ++KREPDDP +YLLAIWTPGET
Sbjct: 1541 ALTAEAASIPTPRLKNVNRLRTEHQVYELPDSHPLLNELDKREPDDPCKYLLAIWTPGET 1600
Query: 803 ANSIQPPESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGT 862
ANSIQ PE RC+SQEHGK+CD++TCFSCNS++E+E QIVRGT+LIPCRTAMRGSFPLNGT
Sbjct: 1601 ANSIQQPERRCNSQEHGKLCDDETCFSCNSIQEAESQIVRGTLLIPCRTAMRGSFPLNGT 1660
Query: 863 YFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYV 922
YFQVNEVFADHDSSL PI VPREWLWNLPRR VYFGTSIPSIFKGLTTEGIQHCFWRGYV
Sbjct: 1661 YFQVNEVFADHDSSLNPIAVPREWLWNLPRRMVYFGTSIPSIFKGLTTEGIQHCFWRGYV 1720
Query: 923 CVRGFDQKSRAPRPLMARLHFPASKLNKVPGKADAD 958
CVRGFDQKSRAPRPLMARLHFP S+L K GK +
Sbjct: 1721 CVRGFDQKSRAPRPLMARLHFPVSRLAKAKGKGAGE 1756
>gi|225440992|ref|XP_002277401.1| PREDICTED: transcriptional activator DEMETER-like [Vitis vinifera]
Length = 1942
Score = 1108 bits (2866), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 589/979 (60%), Positives = 695/979 (70%), Gaps = 52/979 (5%)
Query: 20 SSAFMSLAANFPLNSKQKPCHGEEITSVIEEPAEYVLDPEDTIEWKEKMSHQPVCDQGSM 79
SSAFMSLAA+FP +P E ++EEP L+PEDT+ W EKMS+Q VCDQ SM
Sbjct: 972 SSAFMSLAAHFPCKCNHRPSTELETRILVEEPEVCTLNPEDTVTWNEKMSNQAVCDQSSM 1031
Query: 80 TLHGSESSEEREVVSSNNSLESSTSVVSSINESKCKLM--------NSSEIYPETY---- 127
TLH +E E V+SN S +S V +++ SK K++ N S + T
Sbjct: 1032 TLHHTE-----EAVNSNGSYGNSRGTVGTVDISKDKMLDSTGKKMSNKSSVNGTTTQMIG 1086
Query: 128 --------------NDVLSSPNSLDSSFAPFADGTISSSNSNSDAGDSSNVPT---LNSF 170
+D SS NSLD S A A+ S S SNS+ D +PT LN+F
Sbjct: 1087 TELACFIGGDRTAADDAASSQNSLDFSIAQTAEKIGSCSESNSEVEDI--MPTGYGLNNF 1144
Query: 171 NGSNSFVELLQMVGSTMLHGNYNHRNGHMSSDENSKDEHSQFQTLESNTQRVKVKD-IDD 229
+GS SFV LLQM ST LH + N + + N KD + +++ +R + D + D
Sbjct: 1145 DGSTSFVGLLQMAESTRLHEVFCRSNINATCGANPKDVNYHSESMSGYNKRSQNMDGLAD 1204
Query: 230 PKVLSRVSSIPPSSFHPCLTQDLSV-EVESYEMRREETRSSGISD----VTDKIALMPEF 284
+ V+ IP S++H L + V EVE +EM ETRSS IS V+++ L E
Sbjct: 1205 CRSSLGVTIIPSSNYHLHLNPNSGVLEVEGFEMS-GETRSSEISKDQKCVSEQSGLTAES 1263
Query: 285 ASQTTDATKL---IVAGPEAPRHGNKQSRNSMQANKNSIAQHESELFGDSRFAMEPPAHA 341
+Q D KL I AGP + N S N++Q N I + +S GD + +E
Sbjct: 1264 DNQAKDEKKLTESIQAGPTSSCE-NTFSDNNLQGENNKIIESQSSPVGDPKNVVESVGQE 1322
Query: 342 QKNDL----NLPKISSGSIDAIESHNALYNRENTQLKSSVSDQNKYDHSFSKELNGIDDA 397
Q + + NL IS ++D I+ +A N+ + + + S + ++ S SK N I
Sbjct: 1323 QISRMQQSQNLMNISGKALDVIDCPSAFSNQTHIEDRKSETGVKEHGLSSSKASNEIGVD 1382
Query: 398 TSKSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTI 457
TSK+K + +E++N WD+LR++ + NG K+ER +T DSLDWEAVRC+DVN+IANTI
Sbjct: 1383 TSKAKKGKARREEKNTLHWDNLRKEAQVNGRKRERTVNTMDSLDWEAVRCSDVNEIANTI 1442
Query: 458 KERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRL 517
KERGMNNMLA RIKDFLNRLVRDHGS+DLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRL
Sbjct: 1443 KERGMNNMLAERIKDFLNRLVRDHGSIDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRL 1502
Query: 518 LTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQ 577
LTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQ
Sbjct: 1503 LTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQ 1562
Query: 578 RTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSAN 637
RTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFAS+RLAL GPEE++IVS N
Sbjct: 1563 RTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALTGPEERSIVSTN 1622
Query: 638 ENRTNTQNPAMMINQLPLPLTHATDLPVGKLEIAVNNCEPIIEEPATPEPERVQVSENDI 697
N + NP + IN LPL + +NNCEPI+E PATPE E Q+ E+DI
Sbjct: 1623 ANESMDGNPDVTINPLPL-PPPLPQKQSSEANPGINNCEPIVEVPATPEQEHPQILESDI 1681
Query: 698 EDTFCEDPEEIPTIKLNMKEFTQTLQNYMQENLELQEGDMSKALVALTAGAASIPAPKLK 757
EDT EDP+EIPTIKLN++EFT LQNYMQ N+ELQE DMSKALVALT ASIP PKLK
Sbjct: 1682 EDTLYEDPDEIPTIKLNIEEFTHNLQNYMQRNMELQESDMSKALVALTPEVASIPMPKLK 1741
Query: 758 NVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQE 817
NVSRLRTEH VYELPDSHPLL G++KREPDDP YLLAIWTPGETANSIQPPE CSSQE
Sbjct: 1742 NVSRLRTEHHVYELPDSHPLLEGLDKREPDDPCSYLLAIWTPGETANSIQPPERTCSSQE 1801
Query: 818 HGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSL 877
G +CDEKTCFSCNS+RE+ Q VRGT+LIPCRTAMRGSFPLNGTYFQVNEVFADHDSSL
Sbjct: 1802 SGGLCDEKTCFSCNSIREANSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSL 1861
Query: 878 KPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPL 937
PI+VPR W+WNLPRRTVYFGTSIP+IFKGL+TE IQ+CFWRG+VCVRGFDQK+RAPRPL
Sbjct: 1862 NPIDVPRAWIWNLPRRTVYFGTSIPTIFKGLSTEDIQYCFWRGFVCVRGFDQKTRAPRPL 1921
Query: 938 MARLHFPASKLNKVPGKAD 956
MARLHFPAS+L + GK +
Sbjct: 1922 MARLHFPASRLTRTKGKIN 1940
>gi|138996985|dbj|BAF52855.1| repressor of silencing 1 [Nicotiana tabacum]
Length = 1796
Score = 1000 bits (2586), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 534/968 (55%), Positives = 669/968 (69%), Gaps = 55/968 (5%)
Query: 20 SSAFMSLAANFPLNSKQKPCHGEEITSVI-EEPAEYVLDPEDTIEWKEKMSHQPVCDQGS 78
SSAFMSLAA FPL SK EE T +I EEP L+P+DTI W + S P Q
Sbjct: 851 SSAFMSLAAQFPLKSKAGTEKHEERTGIIIEEPEVSGLEPDDTIGWHDDQSSPPTLGQDF 910
Query: 79 MTLHGSESSEEREVVSSNNSLESSTSVVS----SINESKCKLMNSSEIY--PETYNDVLS 132
+ + +ES+ E+ VV+S S E+ST+ S SI++ SS ++ P Y +
Sbjct: 911 LRISSAESNGEKTVVNSIESSENSTNCTSPTENSISQQPGSSRESSCVHHEPAMYGSATA 970
Query: 133 SPNS--LDSSFAPFADGTISSSNSNSDAGDSSNVPTLNS--------FNGSNSFVELLQM 182
+ + L+ P D +SS NS + +S N P + + F+GS SF++LLQM
Sbjct: 971 NAATSFLEDQIGP--DDLLSSQNSVLSSQNSVNFPVVQTLEGTESSNFSGSTSFLKLLQM 1028
Query: 183 VGSTMLHGNYNHRNGHMSSDENSKDEHSQFQ-TLESNTQRVKVKDIDDPKVLSRVSSIPP 241
G++ HG + ++ ++ + D H Q T S+ Q+ D+ + ++ P
Sbjct: 1029 AGTSKSHGVQDQKSENILPE---TDVHGQLHVTCCSHFQK------DEENHKGSLENVCP 1079
Query: 242 SSF-HPCLTQDLSVEVESYEMRREETRSSGISDVTDKIALMPE--FASQTTDATKLIVAG 298
S+ CL ++ + + EE ++ D++ K++ + + ++++T+
Sbjct: 1080 RSYLDSCLMPNVGAQGTKCKDNLEE--AAKFPDLSRKLSALEQSKLSAESTNQALYEEMS 1137
Query: 299 PEAPRHGNKQSRNSMQANKNSIAQHESEL-FGDSRFAMEPPAHAQKNDLNLPKISSGSID 357
+ +++ + + +A E ++ +S + M+ A A P S +D
Sbjct: 1138 EAKISRNHHENKVDIATIDDPVANFELQIQIEESNYNMQRVAEA-------PTFSEAIVD 1190
Query: 358 AIESHNALYNRENTQLKSSVSDQNKYDHSFSKELNGIDDATSKSKSTRVSKEKQNDFDWD 417
E + + + ++ + S+ N H L+ +D T K+K R KEKQN DWD
Sbjct: 1191 VREEVSVVVDSCKSEHIALKSNSNNKKHHADSTLDRANDNT-KAKKERPGKEKQN-VDWD 1248
Query: 418 SLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRL 477
SLR Q + NG K+ER +T DSLDWEAVRCADVN+IA+TI+ERGMNNMLA RIKDFLNR+
Sbjct: 1249 SLRLQAQNNGKKRERTANTMDSLDWEAVRCADVNEIAHTIRERGMNNMLAERIKDFLNRI 1308
Query: 478 VRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVR 537
R+HGS+DLEWLRDVPPDKAKEYLLS RGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVR
Sbjct: 1309 FREHGSIDLEWLRDVPPDKAKEYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVR 1368
Query: 538 LGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTK 597
LGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHY MITFGKVFCTK
Sbjct: 1369 LGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYHMITFGKVFCTK 1428
Query: 598 SKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANENRTNTQNPAMMINQLPLPL 657
SKPNCNACP+RGECRHFASAFAS+RLALP PEEK+IVSA EN+ QNP +QL LPL
Sbjct: 1429 SKPNCNACPLRGECRHFASAFASARLALPAPEEKSIVSATENKAAGQNPFQNFSQLLLPL 1488
Query: 658 THATDLPVGKLEIAVNNC---------EPIIEEPATPEPERVQVSENDIEDTFCEDPEEI 708
A P+ ++ +N+ EPI+EEPA+PEPE+ E DIED + EDP EI
Sbjct: 1489 PQADQTPLEHSKL-INSAPIIEVPATPEPIVEEPASPEPEQ-NAPEVDIEDAYFEDPNEI 1546
Query: 709 PTIKLNMKEFTQTLQNYMQENLELQEGDMSKALVALTAGAASIPAPKLKNVSRLRTEHQV 768
PTI LNM EFTQ ++ +M+ N+ELQ+ +MSKALVALT AASIP PKLK++SRLRTEHQV
Sbjct: 1547 PTITLNMAEFTQNVKKFMENNMELQQVEMSKALVALTPEAASIPVPKLKHISRLRTEHQV 1606
Query: 769 YELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQEHGKMCDEKTCF 828
YEL DSHPLL G +KREPDDP YLLAIWTPGETA+SI PP +C+SQE G++CD++TCF
Sbjct: 1607 YELSDSHPLLEGFDKREPDDPCSYLLAIWTPGETADSIHPPAIKCNSQEAGRLCDDETCF 1666
Query: 829 SCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLW 888
+CNS+RE+ Q VRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSL PI+VPR+WLW
Sbjct: 1667 ACNSLREAHSQTVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPRDWLW 1726
Query: 889 NLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMARLHFPASKL 948
NLPRRTVYFGTSIP+IFKGLTTE IQHCFWRG+VCVRGFD+K+RAPRPLMARLHFPAS+L
Sbjct: 1727 NLPRRTVYFGTSIPTIFKGLTTESIQHCFWRGFVCVRGFDKKTRAPRPLMARLHFPASRL 1786
Query: 949 NKVPGKAD 956
++ GK D
Sbjct: 1787 SRTKGKPD 1794
>gi|225449724|ref|XP_002267310.1| PREDICTED: transcriptional activator DEMETER-like [Vitis vinifera]
Length = 2198
Score = 991 bits (2562), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 546/982 (55%), Positives = 664/982 (67%), Gaps = 76/982 (7%)
Query: 20 SSAFMSLAANFPLNSK-QKPCHGEEITSVIEEPAEYVLDPEDTIEWKEKMSHQPVCDQGS 78
SSAFMSL + FPL+ + K + E + ++EEP +++P+DTI+W EK+SHQ V +Q
Sbjct: 1238 SSAFMSLVSRFPLHPESNKTSYSNEASILVEEPEVCIMNPDDTIKWHEKVSHQQVYNQAF 1297
Query: 79 MTLHGSESSEEREVVSSNNSLESSTSVVSSINESKCKLMNSSEIYPETYNDVLSSPNSLD 138
+ SESSE R S +S S TS+V + N+ +V+SS +S++
Sbjct: 1298 VAY--SESSEHRR--DSPDSGTSETSLVGAPNQ-------------RAEEEVMSSQDSVN 1340
Query: 139 SSFAPFADGTI--SSSNSNSDAGDSSNVPTLNSFNGSNSFVELLQMVGSTMLHGNYNHRN 196
SS T+ S S SNS+A D + N S S +L M + M H N
Sbjct: 1341 SSVV---QTTVLRSCSGSNSEAEDPTTGHKTNKVQASAS-TNILYMEKTFMSQECQYHAN 1396
Query: 197 GHMSSDENS---KDEHSQFQTLESNTQRVKVKD-IDDPKVLSRVSSIPPSSFHPCLTQDL 252
+ DEN+ + ++ + +E++T+ + I+ + ++P S++ +T D
Sbjct: 1397 KSSNFDENTMRYRKQNPRLDRVENHTESSSLTYLINSGNSNKQAPAVPSSNYRLHMTPDS 1456
Query: 253 SV-EVESYEMRREETRSS------GISDVTD------KIALMPEFASQTT-------DAT 292
+ EVE ++ EE+ SS GI++ D M E +TT +
Sbjct: 1457 GILEVECLQVLGEESISSWPSAASGIANPKDVNWTSKGTQQMTESIRKTTAQQNGLMNLQ 1516
Query: 293 KLIVAGPEAPRHGNKQSRNSMQA------NKNSIAQHESELFGDSRFAMEP------PAH 340
+ V P A ++SMQ +K S H+ E + P PA
Sbjct: 1517 EATVGNPNALLRNYPMQQSSMQPGCTTENDKQSCKNHDLERTKTFQMQSMPSREPLKPAE 1576
Query: 341 A--QKNDL------NLPKISSGSIDAIESHNALYNR---ENTQLKSSVSDQNKYDHSFSK 389
A + D N+P+++ + + E +A+ + EN L+ +Q HS +K
Sbjct: 1577 ALDTRRDTTMHQIPNVPELTEEASNVRERDSAVDKQICLENEVLEPLSREQ---VHSSNK 1633
Query: 390 ELNGIDDATSKSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCAD 449
E G K K +V K+ FDWDSLR+QV+ANG K+ER + T DSLD+EA+RCA
Sbjct: 1634 ESGGTTTNILKPKKEKVEGTKKKAFDWDSLRKQVQANGRKRERSKDTMDSLDYEAIRCAH 1693
Query: 450 VNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGL 509
VN I+ IKERGMNNMLA RIKDFLNRLVR+HGS+DLEWLRD PPDKAK+YLLS RGLGL
Sbjct: 1694 VNVISEAIKERGMNNMLAERIKDFLNRLVREHGSIDLEWLRDSPPDKAKDYLLSIRGLGL 1753
Query: 510 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 569
KSVECVRLLTLH LAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP+LESIQKYLW
Sbjct: 1754 KSVECVRLLTLHQLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPMLESIQKYLW 1813
Query: 570 PRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPE 629
PRLCKLDQRTLYELHYQ+ITFGKVFCTK KPNCNACPMRGECRHFASAFAS+RLALP PE
Sbjct: 1814 PRLCKLDQRTLYELHYQLITFGKVFCTKHKPNCNACPMRGECRHFASAFASARLALPAPE 1873
Query: 630 EKAIVSANENRTNTQNPAMMINQLPLPLTHATDLPVGKLEIAVNNCEPIIEEPATPEPER 689
EK+IVS+ +NP IN +PLP + L GK E + CEPIIE PATPEP+
Sbjct: 1874 EKSIVSSTAPSVADRNPTAFINPIPLPSLESNLL--GKEEQDTSKCEPIIEVPATPEPQC 1931
Query: 690 VQVSENDIEDTFCEDPEEIPTIKLNMKEFTQTLQNYMQENLELQEGDMSKALVALTAGAA 749
++ E+DIED F EDP+EIPTIKLN +EFT LQNYMQEN+ELQEGDMSKALVAL A
Sbjct: 1932 IETLESDIEDAFYEDPDEIPTIKLNFEEFTLNLQNYMQENMELQEGDMSKALVALDPKAT 1991
Query: 750 SIPAPKLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPP 809
SIP PKLKNVSRLRTEHQVYELPDSHPLL+GM+ REPDDP YLLAIWTPGETANS QPP
Sbjct: 1992 SIPTPKLKNVSRLRTEHQVYELPDSHPLLKGMDIREPDDPSPYLLAIWTPGETANSSQPP 2051
Query: 810 ESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEV 869
E RC SQE GK+C+EKTCFSCNS+RE+ Q VRGT+LIPCRTAMRGSFPLNGTYFQVNEV
Sbjct: 2052 ERRCESQEPGKLCNEKTCFSCNSLREANSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEV 2111
Query: 870 FADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQ 929
FADHDSS+ PI+VPR W+WNLPRRTVYFGTS+ SIF+GL TEGIQ+CFWRG+VCVRGFDQ
Sbjct: 2112 FADHDSSINPIDVPRAWIWNLPRRTVYFGTSVTSIFRGLPTEGIQYCFWRGFVCVRGFDQ 2171
Query: 930 KSRAPRPLMARLHFPASKLNKV 951
KSRAPRPLMARLH A+KL+K
Sbjct: 2172 KSRAPRPLMARLHLSANKLSKT 2193
>gi|356546049|ref|XP_003541444.1| PREDICTED: protein ROS1-like [Glycine max]
Length = 1881
Score = 966 bits (2498), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 533/984 (54%), Positives = 651/984 (66%), Gaps = 99/984 (10%)
Query: 20 SSAFMSLAANFPL--NSKQKPCHGEEITSVIEEPAEYVLDPEDTIEWKEKMSHQPVCDQG 77
SSAFMSLAA FP +S K H E+ V+ +P ++++PE++ EW K+ +Q V DQ
Sbjct: 906 SSAFMSLAARFPKISSSMCKTHHAEDTRLVVNKPQVHIVEPEESTEWDVKLLNQSVYDQP 965
Query: 78 SMTLHGSESSEEREVVSSNNSLESSTSVVSSINESK--------------CKLMNSSEIY 123
S T+ E S E+E +SN S +++SV+S +ES C M S +
Sbjct: 966 SPTIDIVEHSREKEAFNSNESCGTTSSVISLTDESNSRLSELPQKNIKEHCSPMRSGLLS 1025
Query: 124 P---------------ETYNDVLSSPNSLDSS--FAPFADG-----TISSSNSNSDAGDS 161
+ ND++SS S+ SS F++ S S+SNS+
Sbjct: 1026 ASIEEGEEKSCYDGDRKELNDIVSSQGSVISSQISGDFSNDQNPEKIGSCSDSNSEVEVL 1085
Query: 162 SNVPTLNSFNGSNSFVELLQMVGSTMLHGNYNHRNGHMSSDENSKDEHSQFQTLESNTQR 221
S+ N F + SF +LL+MV ST + + + ++ S EN +D + Q + N
Sbjct: 1086 SSTAKYNHFGSNTSFSKLLEMVSSTKFYADNSQKS---ESIENLRDAYDQHIHRQHNNTI 1142
Query: 222 VKVKDIDDPKVLSRVSSIPPSSFHPCLTQDLS-VEVESYEMRREETRSSGISDVTDKIAL 280
+K + + S I + L +L ++V ++ + E +S D+
Sbjct: 1143 ESLKKSSATQGSAEASIILSDEYTLKLAPNLGMLDVNCFDPFKTEASTSDFLKKKDE--- 1199
Query: 281 MPEFASQTTDATKLIVAGPEAPRHGNKQSRNSMQANK--NSIAQHESELFGDSRFAMEPP 338
N +R+S+Q + +A S+ E
Sbjct: 1200 -------------------------NSMNRSSLQTTEPGGQVATTHSQSIVSQVHPQEQS 1234
Query: 339 AHAQKNDLNLPKISSGSIDAIESHNALYNRENTQLKSSVSDQNKYDHSFSKELNGIDDAT 398
H Q++ N IS + D ++ K SD + ++ N I A
Sbjct: 1235 NHQQQSFFN---ISGQTQDLMQ-------------KGRGSDLGEQKNAMRNGTNEISSAP 1278
Query: 399 SKSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIK 458
K KS KEK++DFDWDSLR + +A GK+E+ ++T DSLDW+AVRCADV++IA TIK
Sbjct: 1279 IKFKSKEQEKEKKDDFDWDSLRIEAQAKAGKREKTDNTMDSLDWDAVRCADVSEIAETIK 1338
Query: 459 ERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLL 518
ERGMNN LA RIK+FLNRLV +HGS+DLEWLRDVPPDKAKEYLLS RGLGLKSVECVRLL
Sbjct: 1339 ERGMNNRLADRIKNFLNRLVEEHGSIDLEWLRDVPPDKAKEYLLSIRGLGLKSVECVRLL 1398
Query: 519 TLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQR 578
TLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQ
Sbjct: 1399 TLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQE 1458
Query: 579 TLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANE 638
TLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFAS+RLALPGPE+K+IVS
Sbjct: 1459 TLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEQKSIVSTTG 1518
Query: 639 NRTNTQNPAMMINQLPLP----LTHATDLPVGKL------EIAVNNCEPIIEEPATPEPE 688
N QNP+ +I+QL LP A D+ + ++ + +N C+PIIEEP TPEPE
Sbjct: 1519 NSVIDQNPSEIISQLHLPPPESTAQADDIQLTEVSRQLESKSEINICQPIIEEPTTPEPE 1578
Query: 689 RVQVSENDIEDTFCEDPEEIPTIKLNMKEFTQTLQNYMQENLELQEGDMSKALVALTAGA 748
+QVS+ DIED F ED EIPTI LN++EFT LQNYMQE +ELQE +MSKALVAL A
Sbjct: 1579 CLQVSQTDIEDAFYEDLCEIPTINLNIEEFTMNLQNYMQEKMELQEAEMSKALVALNPEA 1638
Query: 749 ASIPAPKLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQP 808
ASIP PKLKNVSRLRTEH VYELPD+HPLL+G + REPDDPG+YLLAIWTPGETANSIQP
Sbjct: 1639 ASIPMPKLKNVSRLRTEHCVYELPDTHPLLQGWDTREPDDPGKYLLAIWTPGETANSIQP 1698
Query: 809 PESRCSSQEH-GKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVN 867
PES+CSSQE G++C+E CFSCNS RE+ QIVRGT+LIPCRTA RGSFPLNGTYFQVN
Sbjct: 1699 PESKCSSQEECGQLCNENECFSCNSFREANSQIVRGTLLIPCRTATRGSFPLNGTYFQVN 1758
Query: 868 EVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGF 927
EVFADHDSSL PI+VPR W+WNL RRTVYFGTS+ +IFKGLTT+ IQ CFWRGYVCVRGF
Sbjct: 1759 EVFADHDSSLNPISVPRSWIWNLNRRTVYFGTSVTTIFKGLTTQEIQQCFWRGYVCVRGF 1818
Query: 928 DQKSRAPRPLMARLHFPASKLNKV 951
D+++RAPRPLMARLHFPASKL K
Sbjct: 1819 DREARAPRPLMARLHFPASKLAKT 1842
>gi|297740062|emb|CBI30244.3| unnamed protein product [Vitis vinifera]
Length = 1470
Score = 951 bits (2459), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/571 (78%), Positives = 492/571 (86%), Gaps = 1/571 (0%)
Query: 386 SFSKELNGIDDATSKSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAV 445
S SK N I TSK+K + +E++N WD+LR++ + NG K+ER +T DSLDWEAV
Sbjct: 899 SSSKASNEIGVDTSKAKKGKARREEKNTLHWDNLRKEAQVNGRKRERTVNTMDSLDWEAV 958
Query: 446 RCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFR 505
RC+DVN+IANTIKERGMNNMLA RIKDFLNRLVRDHGS+DLEWLRDVPPDKAKEYLLSFR
Sbjct: 959 RCSDVNEIANTIKERGMNNMLAERIKDFLNRLVRDHGSIDLEWLRDVPPDKAKEYLLSFR 1018
Query: 506 GLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQ 565
GLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQ
Sbjct: 1019 GLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQ 1078
Query: 566 KYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLAL 625
KYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFAS+RLAL
Sbjct: 1079 KYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLAL 1138
Query: 626 PGPEEKAIVSANENRTNTQNPAMMINQLPLPLTHATDLPVGKLEIAVNNCEPIIEEPATP 685
GPEE++IVS N N + NP + IN LPL + +NNCEPI+E PATP
Sbjct: 1139 TGPEERSIVSTNANESMDGNPDVTINPLPL-PPPLPQKQSSEANPGINNCEPIVEVPATP 1197
Query: 686 EPERVQVSENDIEDTFCEDPEEIPTIKLNMKEFTQTLQNYMQENLELQEGDMSKALVALT 745
E E Q+ E+DIEDT EDP+EIPTIKLN++EFT LQNYMQ N+ELQE DMSKALVALT
Sbjct: 1198 EQEHPQILESDIEDTLYEDPDEIPTIKLNIEEFTHNLQNYMQRNMELQESDMSKALVALT 1257
Query: 746 AGAASIPAPKLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANS 805
ASIP PKLKNVSRLRTEH VYELPDSHPLL G++KREPDDP YLLAIWTPGETANS
Sbjct: 1258 PEVASIPMPKLKNVSRLRTEHHVYELPDSHPLLEGLDKREPDDPCSYLLAIWTPGETANS 1317
Query: 806 IQPPESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQ 865
IQPPE CSSQE G +CDEKTCFSCNS+RE+ Q VRGT+LIPCRTAMRGSFPLNGTYFQ
Sbjct: 1318 IQPPERTCSSQESGGLCDEKTCFSCNSIREANSQTVRGTLLIPCRTAMRGSFPLNGTYFQ 1377
Query: 866 VNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVR 925
VNEVFADHDSSL PI+VPR W+WNLPRRTVYFGTSIP+IFKGL+TE IQ+CFWRG+VCVR
Sbjct: 1378 VNEVFADHDSSLNPIDVPRAWIWNLPRRTVYFGTSIPTIFKGLSTEDIQYCFWRGFVCVR 1437
Query: 926 GFDQKSRAPRPLMARLHFPASKLNKVPGKAD 956
GFDQK+RAPRPLMARLHFPAS+L + GK +
Sbjct: 1438 GFDQKTRAPRPLMARLHFPASRLTRTKGKIN 1468
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 94/230 (40%), Gaps = 71/230 (30%)
Query: 20 SSAFMSLAANFPLNSKQKPCHGEEITSVIEEPAEYVLDPEDTIEWKEKMSHQPVCDQGSM 79
SSAFMSLAA+FP +P E ++EEP L+PEDT+ W EKMS+Q VCDQ
Sbjct: 706 SSAFMSLAAHFPCKCNHRPSTELETRILVEEPEVCTLNPEDTVTWNEKMSNQAVCDQ--- 762
Query: 80 TLHGSESSEEREVVSSNNSLESSTSVVSSINESKCKLMNSSEIYPETYNDVLSSPNSLDS 139
N S+ + + S +ES ++ +I P Y
Sbjct: 763 ----------------NFSIAQTAEKIGSCSESNSEV---EDIMPTGYG----------- 792
Query: 140 SFAPFADGTISSSNSNSDAGDSSNVPTLNSFNGSNSFVELLQMVGSTMLHGNYNHRNGHM 199
LN+F+GS SFV LLQM ST LH + N +
Sbjct: 793 ---------------------------LNNFDGSTSFVGLLQMAESTRLHEVFCRSNINA 825
Query: 200 SSDENSKD----EHSQFQ--TLESNTQRVKVKDIDDPKVLSRVSSIPPSS 243
+ N KD H F T ES+ Q D+ K+ + + P SS
Sbjct: 826 TCGANPKDFTGSNHYPFHGLTAESDNQAK-----DEKKLTESIQAGPTSS 870
>gi|356503779|ref|XP_003520681.1| PREDICTED: protein ROS1-like [Glycine max]
Length = 1764
Score = 939 bits (2426), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 528/986 (53%), Positives = 627/986 (63%), Gaps = 118/986 (11%)
Query: 20 SSAFMSLAANFPL--NSKQKPCHGEEITSVIEEPAEYVLDPEDTIEWKEKMSHQPVCDQG 77
SSAFMSLAA FPL +S K C E + VI EP +++PE+ + EK+S Q VC+
Sbjct: 804 SSAFMSLAARFPLRSSSNYKTCPEESTSLVINEPQVIIVEPEENEKLDEKISDQSVCELN 863
Query: 78 SMTLHGSESSEEREVVSSNNSLESSTSVVSSINESKCKLMNSSEIYPETYNDVLSSP--- 134
SMT+ E SEEREVV NNS ++ ++ +ES KL+ S++ + ++ V S
Sbjct: 864 SMTIDIIEHSEEREVVDRNNSCRTNGGLIGVADESNSKLLESAQRHNSEHSPVESGAISA 923
Query: 135 -------NSLDSSFAPFADGTISS-------------------------SNSNSDAGDSS 162
N S +G SS S+SNS+ D S
Sbjct: 924 VTGEGPKNLCHGSLGKELNGVFSSQCSAITSQISGGFSIDQNPEKIGSFSDSNSEIEDLS 983
Query: 163 NVPTLNSFNGSNSFVELLQMVGSTMLHGNYNHRNGHMSSDENSKDEHSQ-----FQTLES 217
+ NS+ SF ELL+M STMLH + R+ S EN D Q L
Sbjct: 984 SAAKYNSYYNRISFSELLEMASSTMLHEVNSQRS---KSTENLGDTCDQSIDMKHDNLAE 1040
Query: 218 NTQRVKVKD--IDDPKVLSRVSSIPPSSFHPCLTQDLSVEVESYEMRREETRSSGISDVT 275
N ++ V + P I P+S +EV Y+ + E SSG S
Sbjct: 1041 NLEKSDVTQGSAEAPITNGYTFKITPNSG--------VLEVNCYDPLKIEVPSSGSSKGK 1092
Query: 276 DKIALMPEFASQTTDATKLIVAGPEAPRHGNKQSRNSMQANKNSIAQHESELFGDSRFAM 335
D+ F ++ +D IV H + S
Sbjct: 1093 DENDNRSSFPTE-SDCQAAIV--------------------------HSQGMLSQS---- 1121
Query: 336 EPPAHAQKNDLNLPKISSGSIDAIESHNAL-YNR-ENTQLKSSVSDQNKYDHSFSKELNG 393
P + N+ IS + D ++ L + R E++++ SS +H K+ N
Sbjct: 1122 HPQQQSNHEQHNVFHISGQTEDPMQKARGLDFGRNESSKIDSSPVKLRSREHGKEKKNNF 1181
Query: 394 IDDATSKSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKI 453
D+ + K ++ + DS LDW+AVR ADV++I
Sbjct: 1182 DWDSLRIQAEAKAGKREKTENTMDS---------------------LDWDAVRRADVSEI 1220
Query: 454 ANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVE 513
AN IKERGMNNMLA RI+ FLN LV HG +DLEWLRDVPPD+AKE+LLS RGLGLKSVE
Sbjct: 1221 ANAIKERGMNNMLAERIQSFLNLLVDKHGGIDLEWLRDVPPDQAKEFLLSIRGLGLKSVE 1280
Query: 514 CVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLC 573
CVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLC
Sbjct: 1281 CVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLC 1340
Query: 574 KLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAI 633
KLDQRTLYELHYQ+ITFGKVFCTKSKPNCNACPMRGECRHFASAFAS+RLALPG E+K+I
Sbjct: 1341 KLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGSEQKSI 1400
Query: 634 VSANENRTNTQNPAMMINQLPLPLTHATDLP-------VGKLEIA--VNNCEPIIEEPAT 684
V N QNP+++INQLPL L + + +LE +N +PIIEEPAT
Sbjct: 1401 VITTGNNATEQNPSLVINQLPLLLPENINQAELQQTEVIRQLEAKSEINISQPIIEEPAT 1460
Query: 685 PEPERVQVSENDIEDTFCEDPEEIPTIKLNMKEFTQTLQNYMQENLELQEGDMSKALVAL 744
PEPE QVSENDIEDTF E+ EIPTIKL+++EFT LQNYMQEN+ELQEG+MSKALVAL
Sbjct: 1461 PEPECSQVSENDIEDTFNEESCEIPTIKLDIEEFTLNLQNYMQENMELQEGEMSKALVAL 1520
Query: 745 TAGAASIPAPKLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETAN 804
GAA IP PKLKNVSRLRTEH VYELPDSHPLL G KREPDDPG+YLLAIWTPGETA+
Sbjct: 1521 HPGAACIPTPKLKNVSRLRTEHYVYELPDSHPLLNGWNKREPDDPGKYLLAIWTPGETAD 1580
Query: 805 SIQPPESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYF 864
SIQPPES+CSSQE G++C+E CFSCNS RE+ QIVRGT+LIPCRTAMRGSFPLNGTYF
Sbjct: 1581 SIQPPESKCSSQECGRLCNENECFSCNSFREASSQIVRGTLLIPCRTAMRGSFPLNGTYF 1640
Query: 865 QVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCV 924
QVNEVFAD+DSSL PI+VPR W+WNL RRTVYFGTSIPSIFKGL+T IQ CFWRGYVCV
Sbjct: 1641 QVNEVFADNDSSLNPISVPRSWIWNLDRRTVYFGTSIPSIFKGLSTREIQQCFWRGYVCV 1700
Query: 925 RGFDQKSRAPRPLMARLHFPASKLNK 950
RGFD++ RAPRPL+ARLHFP S+L K
Sbjct: 1701 RGFDREKRAPRPLLARLHFPVSRLPK 1726
>gi|356537037|ref|XP_003537037.1| PREDICTED: uncharacterized protein LOC100806794 [Glycine max]
Length = 1903
Score = 932 bits (2409), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 528/961 (54%), Positives = 633/961 (65%), Gaps = 112/961 (11%)
Query: 20 SSAFMSLAANFPLNSKQ--KPCHGEEITSVIEEPAEYVLDPEDTIEWKEKMSHQPVCDQG 77
SSAFMSLAA FP NS K H E+ V+ EP ++++PE++ EW K+ +Q V DQ
Sbjct: 984 SSAFMSLAARFPKNSSSMCKRHHKEDTRLVVNEPQVHIVEPEESTEWDVKLLNQSVYDQT 1043
Query: 78 SMTLHGSESSEEREVVSSNNSLESSTSVVSSINESKCKL-----MNSSEIYPETYNDVLS 132
S T+ +E S E+E V+SN S + +SV+S +ES +L N E T + +LS
Sbjct: 1044 S-TIDMAEHSGEKEAVNSNESCGTPSSVISLTDESNSRLSELPQKNIKEHCSPTRSGILS 1102
Query: 133 SPNSLDSSFAPF------------ADGTISSSNSNSDAGDSSNVPTLNSFNGSNSFVELL 180
+ + + + G++ SS + D + N + S + SNS VE+L
Sbjct: 1103 ATIEEGEEKSCYNGDRKELNDIVSSQGSVFSSQISGDFSNDQNPEKIGSCSDSNSEVEVL 1162
Query: 181 QMVGSTMLHGNYNHRNGHMSSDENSKDEHSQFQTLESNTQRVKVKDIDDPKVLSRVSSIP 240
YNH + S K+L VSS
Sbjct: 1163 SSTAK------YNHFGSNTSFS----------------------------KLLEMVSS-- 1186
Query: 241 PSSFHPCLTQDLSVEVESYEMRREETRSSGISDVTDKIALMPEFASQTTDATKLIVAGPE 300
+ F+ +D S + ES E +SG+ +V E + T+D K
Sbjct: 1187 -TKFY----EDNSQKSESIE-------NSGMLEVNGFDPFKTE--ASTSDLKK------- 1225
Query: 301 APRHGNKQSRNSMQANK--NSIAQHESELFGDSRFAMEPPAHAQKNDLNLPKISSGSIDA 358
+ N +R+S+Q + +A S+ E H Q++ N IS + D
Sbjct: 1226 --KDENGMNRSSLQTTEPAGQVAITHSQSIASQVHPREQSNHQQQSFFN---ISGQTQDL 1280
Query: 359 IESHNALYNRENTQLKSSVSDQNKYDHSFSKELNGIDDATSKSKSTRVSKEKQNDFDWDS 418
++ S + +Q + + E I A K K+ KEK++DF+WDS
Sbjct: 1281 MQKERG----------SGLGEQKNATRNGTNE---ISSAPIKLKTKEQGKEKKDDFNWDS 1327
Query: 419 LRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLV 478
LR +A GK+E+ E+T DSLDW+AVRCADV++IA TIKERGMNN LA RIK+FLNRLV
Sbjct: 1328 LRIDAQAKAGKREKTENTMDSLDWDAVRCADVSEIAETIKERGMNNRLAERIKNFLNRLV 1387
Query: 479 RDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRL 538
+H S+DLEWLRDVPPDKAKEYLLS RGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRL
Sbjct: 1388 EEHESIDLEWLRDVPPDKAKEYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRL 1447
Query: 539 GWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKS 598
GWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQ TLYELHYQMITFGKVFCTKS
Sbjct: 1448 GWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQETLYELHYQMITFGKVFCTKS 1507
Query: 599 KPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANENRTNTQNPAMMINQLPLP-- 656
KPNCNACPMR ECRHFASAFAS+R ALPGPE+K+IVS N QNP+ +I+QL LP
Sbjct: 1508 KPNCNACPMRAECRHFASAFASARFALPGPEQKSIVSTTGNSVINQNPSEIISQLHLPPP 1567
Query: 657 ----------LTHATDLPVGKLEIAVNNCEPIIEEPATPEPERVQVSENDIEDTFCEDPE 706
LT + K EI N C+PIIEEP TPEPE +Q S+ DIED F ED
Sbjct: 1568 ENTAQEDEIQLTEVSRQLESKFEI--NICQPIIEEPRTPEPECLQESQTDIEDAFYEDSS 1625
Query: 707 EIPTIKLNMKEFTQTLQNYMQENLELQEGDMSKALVALTAGAASIPAPKLKNVSRLRTEH 766
EIPTI LN++EFT LQNYMQEN+ELQ G+MSKALVAL AASIP PKLKNV RLRTEH
Sbjct: 1626 EIPTINLNIEEFTLNLQNYMQENMELQGGEMSKALVALNPQAASIPMPKLKNVGRLRTEH 1685
Query: 767 QVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQEH-GKMCDEK 825
VYELPD+HPLL+G + REPDDPG+YLLAIWTPGETANSIQPPES CSSQE G++C+EK
Sbjct: 1686 CVYELPDTHPLLQGWDTREPDDPGKYLLAIWTPGETANSIQPPESNCSSQEECGQLCNEK 1745
Query: 826 TCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPRE 885
CFSCNS RE+ QIVRGT+LIPCRTAMRGSFPLNGTYFQVNEVFADHDSSL PI+VPR
Sbjct: 1746 ECFSCNSFREANSQIVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPISVPRS 1805
Query: 886 WLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMARLHFPA 945
W+WNL RRTVYFGTS+ +IFKGLTT+ Q CFWRGY+CVRGFD+++RAPRPLMARLHFPA
Sbjct: 1806 WIWNLNRRTVYFGTSVTTIFKGLTTQETQQCFWRGYICVRGFDREARAPRPLMARLHFPA 1865
Query: 946 S 946
S
Sbjct: 1866 S 1866
>gi|296090400|emb|CBI40219.3| unnamed protein product [Vitis vinifera]
Length = 1621
Score = 929 bits (2400), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/547 (78%), Positives = 474/547 (86%), Gaps = 2/547 (0%)
Query: 405 RVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNN 464
+V K+ FDWDSLR+QV+ANG K+ER + T DSLD+EA+RCA VN I+ IKERGMNN
Sbjct: 1072 KVEGTKKKAFDWDSLRKQVQANGRKRERSKDTMDSLDYEAIRCAHVNVISEAIKERGMNN 1131
Query: 465 MLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLA 524
MLA RIKDFLNRLVR+HGS+DLEWLRD PPDKAK+YLLS RGLGLKSVECVRLLTLH LA
Sbjct: 1132 MLAERIKDFLNRLVREHGSIDLEWLRDSPPDKAKDYLLSIRGLGLKSVECVRLLTLHQLA 1191
Query: 525 FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELH 584
FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP+LESIQKYLWPRLCKLDQRTLYELH
Sbjct: 1192 FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPMLESIQKYLWPRLCKLDQRTLYELH 1251
Query: 585 YQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANENRTNTQ 644
YQ+ITFGKVFCTK KPNCNACPMRGECRHFASAFAS+RLALP PEEK+IVS+ +
Sbjct: 1252 YQLITFGKVFCTKHKPNCNACPMRGECRHFASAFASARLALPAPEEKSIVSSTAPSVADR 1311
Query: 645 NPAMMINQLPLPLTHATDLPVGKLEIAVNNCEPIIEEPATPEPERVQVSENDIEDTFCED 704
NP IN +PLP + L GK E + CEPIIE PATPEP+ ++ E+DIED F ED
Sbjct: 1312 NPTAFINPIPLPSLESNLL--GKEEQDTSKCEPIIEVPATPEPQCIETLESDIEDAFYED 1369
Query: 705 PEEIPTIKLNMKEFTQTLQNYMQENLELQEGDMSKALVALTAGAASIPAPKLKNVSRLRT 764
P+EIPTIKLN +EFT LQNYMQEN+ELQEGDMSKALVAL A SIP PKLKNVSRLRT
Sbjct: 1370 PDEIPTIKLNFEEFTLNLQNYMQENMELQEGDMSKALVALDPKATSIPTPKLKNVSRLRT 1429
Query: 765 EHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQEHGKMCDE 824
EHQVYELPDSHPLL+GM+ REPDDP YLLAIWTPGETANS QPPE RC SQE GK+C+E
Sbjct: 1430 EHQVYELPDSHPLLKGMDIREPDDPSPYLLAIWTPGETANSSQPPERRCESQEPGKLCNE 1489
Query: 825 KTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPR 884
KTCFSCNS+RE+ Q VRGT+LIPCRTAMRGSFPLNGTYFQVNEVFADHDSS+ PI+VPR
Sbjct: 1490 KTCFSCNSLREANSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSINPIDVPR 1549
Query: 885 EWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMARLHFP 944
W+WNLPRRTVYFGTS+ SIF+GL TEGIQ+CFWRG+VCVRGFDQKSRAPRPLMARLH
Sbjct: 1550 AWIWNLPRRTVYFGTSVTSIFRGLPTEGIQYCFWRGFVCVRGFDQKSRAPRPLMARLHLS 1609
Query: 945 ASKLNKV 951
A+KL+K
Sbjct: 1610 ANKLSKT 1616
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%), Gaps = 1/53 (1%)
Query: 20 SSAFMSLAANFPLNSK-QKPCHGEEITSVIEEPAEYVLDPEDTIEWKEKMSHQ 71
SSAFMSL + FPL+ + K + E + ++EEP +++P+DTI+W EK+SHQ
Sbjct: 913 SSAFMSLVSRFPLHPESNKTSYSNEASILVEEPEVCIMNPDDTIKWHEKVSHQ 965
>gi|449440467|ref|XP_004138006.1| PREDICTED: uncharacterized protein LOC101222935 [Cucumis sativus]
Length = 1849
Score = 920 bits (2378), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/580 (74%), Positives = 490/580 (84%), Gaps = 11/580 (1%)
Query: 387 FSKELNGIDDATSKSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVR 446
S E + A+S+S+S +V+KEK N +WD+LR++ E NG ++R E T DSLDWEA+R
Sbjct: 1269 LSNEFKELKPASSRSQSKQVAKEKDN-INWDNLRKRTETNGKTRQRTEDTMDSLDWEAIR 1327
Query: 447 CADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRG 506
CADVN+IA+ I+ERGMNNMLA RIKDFLNRLV+DHGS+DLEWLRDV PD+AKEYLLS RG
Sbjct: 1328 CADVNEIAHAIRERGMNNMLAERIKDFLNRLVKDHGSIDLEWLRDVEPDQAKEYLLSIRG 1387
Query: 507 LGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQK 566
LGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQK
Sbjct: 1388 LGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQK 1447
Query: 567 YLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALP 626
YLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFAS+RL LP
Sbjct: 1448 YLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLGLP 1507
Query: 627 GPEEKAIVSANENRTNTQNPAMMINQ--LPLPLTHATDLPVGKLE-------IAVNNCEP 677
PE+K IVS E R N I+Q L LP + + + + E C P
Sbjct: 1508 APEDKRIVSTTECREPDNNQPRTIDQPMLSLPPSTISSVEIKPSESHQSDGKTTAGACVP 1567
Query: 678 IIEEPATPEPERV-QVSENDIEDTFCEDPEEIPTIKLNMKEFTQTLQNYMQENLELQEGD 736
IIEEPATPE E Q + DIED F EDP+EIPTIKLN++EF+Q LQNY+Q+N+ELQEGD
Sbjct: 1568 IIEEPATPEQETATQDAIIDIEDAFYEDPDEIPTIKLNIEEFSQNLQNYVQKNMELQEGD 1627
Query: 737 MSKALVALTAGAASIPAPKLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAI 796
MSKAL+ALT AASIP PKLKNVSRLRTEHQVYELPD+HPLL +++REPDDP YLLAI
Sbjct: 1628 MSKALIALTPEAASIPTPKLKNVSRLRTEHQVYELPDNHPLLEKLDRREPDDPSSYLLAI 1687
Query: 797 WTPGETANSIQPPESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGS 856
WTPGETANSIQ PE RCSSQEH ++C E+ C SCNSVRE+ +VRGT+LIPCRTAMRGS
Sbjct: 1688 WTPGETANSIQLPEKRCSSQEHHQLCCEEECLSCNSVREANSFMVRGTLLIPCRTAMRGS 1747
Query: 857 FPLNGTYFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHC 916
FPLNGTYFQVNEVFADH+SSL PI+VPR+W+WNLPRRTVYFGTSIP+IFKGL+T+GIQHC
Sbjct: 1748 FPLNGTYFQVNEVFADHESSLNPIDVPRDWIWNLPRRTVYFGTSIPTIFKGLSTQGIQHC 1807
Query: 917 FWRGYVCVRGFDQKSRAPRPLMARLHFPASKLNKVPGKAD 956
FWRG+VCVRGFDQK+RAPRPLMARLHFPASKLN+ GK +
Sbjct: 1808 FWRGFVCVRGFDQKTRAPRPLMARLHFPASKLNRGRGKTE 1847
>gi|449465553|ref|XP_004150492.1| PREDICTED: transcriptional activator DEMETER-like [Cucumis sativus]
Length = 1679
Score = 917 bits (2371), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 516/981 (52%), Positives = 634/981 (64%), Gaps = 90/981 (9%)
Query: 20 SSAFMSLAANFPLNSKQK-PCHGEEITSVI-EEPAEYVLDPEDTIEWKEKMSHQPVCDQG 77
SSAFMSLAA FP+ S GE TS++ E A VL P ++I W
Sbjct: 734 SSAFMSLAARFPVKSASNLRTQGEVETSIVANESAACVLYPAESIRW------------- 780
Query: 78 SMTLHGSESSEEREVVSSNNSLESSTSVVSSINESKCKLMNSSEIYPETYNDVLSSPNSL 137
H E S R S+ + +S E + + E V+SS +S
Sbjct: 781 ----HVQELSVPR-FEMPQTSINHQNQIANSGTEKIFTELGGQIVEEE----VISSQDSF 831
Query: 138 DSSFAPFADGTISSSNSNSDAGDSSNVPTLNSFNGSNS----FVELLQMVGSTMLHGNYN 193
DS+ G S S SNS+A + + S+N S++ F ++ QM + + +++
Sbjct: 832 DSTITQGTAGARSCSGSNSEAEEP-----IVSYNSSSTHYSNFTDIKQMETTATIQKSFS 886
Query: 194 HRNGHMSSDENSKDEHSQFQTLESNTQRVKVKDIDDPKVLSRVS----------SIP--P 241
N SDE S+ +H Q + + + +ID+ S ++ +P P
Sbjct: 887 DLNRSSVSDEVSEHKHWQLPDGKQGSLTSEWNEIDNLSGHSLINFLVNIENQPKQVPDAP 946
Query: 242 SSFHPCLTQDLSV-EVESYEMRREETRSSGISDV----TDK--------IALMPEFASQT 288
S+ +T D V EVE E EE+ SSG S V T+K I + + +T
Sbjct: 947 SNNQLHITPDCGVLEVEGREAFSEESTSSGPSIVSGCSTEKNMTFHRLNIGALEQRLDKT 1006
Query: 289 TDATKLIVAGPEAPR--HGNKQSRNSMQANKNSI---AQHESELFG-------------D 330
+ + E R H S +S+ N I + E L G +
Sbjct: 1007 SAEDNVQARSHETTRMEHSESVSEHSVHLQGNGIQFRSHCEYNLHGKYEPCERNNTSPVE 1066
Query: 331 SRFAMEPPAHAQKNDLNLPKISSGSIDAIESHNALYNRENTQLKSSVSDQNKYDHSFSKE 390
S PP +L+ P S + + H A + + ++ N HS S+
Sbjct: 1067 SVSVTNPPP-----ELDTPAEKSAVSNVVHVH-AHTEKLLPGKGNLINFSNNEAHSLSQA 1120
Query: 391 LNGIDDATSKSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADV 450
N + + SK+K +V+ EK+ DWDSLR+QVEANG KE+ + DS+D+EA+R ADV
Sbjct: 1121 HNEGNISPSKAKRRKVNSEKKGGMDWDSLRKQVEANGQIKEKGKDAMDSIDYEAIRLADV 1180
Query: 451 NKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLK 510
+I+N IKERGMNNMLA RIK+FLNRLV DHGS+DLEWLRDVPPDKAK+YLLS RGLGLK
Sbjct: 1181 REISNAIKERGMNNMLAERIKEFLNRLVTDHGSIDLEWLRDVPPDKAKDYLLSVRGLGLK 1240
Query: 511 SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP 570
SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP
Sbjct: 1241 SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP 1300
Query: 571 RLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEE 630
RLCKLDQRTLYELHYQ+ITFGKVFCTKSKPNCNACPMRGEC+HFASAFAS+RLALP P+E
Sbjct: 1301 RLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECKHFASAFASARLALPAPDE 1360
Query: 631 KAIVSANENRTNTQNPAMMINQLPLPLTHATDLPVGKLEIAVNNCEPIIEEPATPEPERV 690
K IV++ + + P ++ N PLP+ + + CEPI+E PATPEPE
Sbjct: 1361 KGIVASTNPMSTEKQPPIVTN--PLPILPPEGSTYAENTSGPSKCEPIVEVPATPEPEPN 1418
Query: 691 QVSENDIEDTFCEDPEEIPTIKLNMKEFTQTLQNYMQENLELQEGDMSKALVALTAGAAS 750
+++E+DIED F EDP+EIPTIKL+M+EF TLQ+Y + EGDMSKALVAL AA
Sbjct: 1419 EITESDIEDAFYEDPDEIPTIKLSMEEFKTTLQHY------IPEGDMSKALVALNPEAAF 1472
Query: 751 IPAPKLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPE 810
IP PKLKNVSRLRTEHQVYELPDSHPLLR M++REPDDP YLLAIWTPGETANSIQPPE
Sbjct: 1473 IPTPKLKNVSRLRTEHQVYELPDSHPLLREMDRREPDDPSPYLLAIWTPGETANSIQPPE 1532
Query: 811 SRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVF 870
C SQ+ ++C+E TCF+CNS RE+ Q VRGT+L+PCRTAMRGSFPLNGTYFQVNE+F
Sbjct: 1533 QSCGSQDPNRLCNEITCFTCNSRREANSQTVRGTLLVPCRTAMRGSFPLNGTYFQVNEMF 1592
Query: 871 ADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQK 930
ADH+SS+KPI+VPR+WLWNLPRRTVYFGTS+ +IFKGL TE IQ CFWRG+VCVRGFDQK
Sbjct: 1593 ADHESSMKPIDVPRKWLWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRGFVCVRGFDQK 1652
Query: 931 SRAPRPLMARLHFPASKLNKV 951
+RAPRPL+ARLHFPASKL KV
Sbjct: 1653 TRAPRPLIARLHFPASKLAKV 1673
>gi|449512809|ref|XP_004164145.1| PREDICTED: transcriptional activator DEMETER-like [Cucumis sativus]
Length = 1736
Score = 917 bits (2371), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 512/981 (52%), Positives = 639/981 (65%), Gaps = 90/981 (9%)
Query: 20 SSAFMSLAANFPLNSKQK-PCHGEEITSVI-EEPAEYVLDPEDTIEWKEKMSHQPVCDQG 77
SSAFMSLAA FP+ S GE TS++ E A VL P ++I W + P +
Sbjct: 791 SSAFMSLAARFPVKSASNLRTQGEVETSIVANESAACVLYPAESIRWHVQELSVPRFEMP 850
Query: 78 SMTLHGSESSEEREVVSSNNSLESSTSVVSSINESKCKLMNSSEIYPETYNDVLSSPNSL 137
+++ + ++++ + + T + I E +V+SS +S
Sbjct: 851 QTSIN------HQNQIANSGTEKIFTELGGQIVEE----------------EVISSQDSF 888
Query: 138 DSSFAPFADGTISSSNSNSDAGDSSNVPTLNSFNGSNS----FVELLQMVGSTMLHGNYN 193
DS+ G S S SNS+A + + S+N S++ F ++ QM + + +++
Sbjct: 889 DSTITQGTAGARSCSGSNSEAEEP-----IVSYNSSSTHYSNFTDIKQMETTATIQKSFS 943
Query: 194 HRNGHMSSDENSKDEHSQFQTLESNTQRVKVKDIDDPKVLSRVS----------SIP--P 241
N SDE S+ +H Q + + + +ID+ S ++ +P P
Sbjct: 944 DLNRSSVSDEVSEHKHWQLPDGKQGSLTSEWNEIDNLSGHSLINFLVNIENQPKQVPDAP 1003
Query: 242 SSFHPCLTQDLSV-EVESYEMRREETRSSGISDV----TDK--------IALMPEFASQT 288
S+ +T D V EVE E EE+ SSG S V T+K I + + +T
Sbjct: 1004 SNNQLHITPDCGVLEVEGREAFSEESTSSGPSIVSGCSTEKNMTFHRLNIGALEQRLDKT 1063
Query: 289 TDATKLIVAGPEAPR--HGNKQSRNSMQANKNSI---AQHESELFG-------------D 330
+ + E R H S +S+ N I + E L G +
Sbjct: 1064 SAEDNVQARSHETTRMEHSESVSEHSVHLQGNGIQFRSHCEYNLHGKYEPCERNNTSPVE 1123
Query: 331 SRFAMEPPAHAQKNDLNLPKISSGSIDAIESHNALYNRENTQLKSSVSDQNKYDHSFSKE 390
S PP +L+ P S + + H A + + ++ N HS S+
Sbjct: 1124 SVSVTNPPP-----ELDTPAEKSAVSNVVHVH-AHTEKLLPGKGNLINFSNNEAHSLSQA 1177
Query: 391 LNGIDDATSKSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADV 450
N + + SK+K +V+ EK+ DWDSLR+QVEANG KE+ + DS+D+EA+R ADV
Sbjct: 1178 HNEGNISPSKAKRRKVNSEKKGGMDWDSLRKQVEANGQIKEKGKDAMDSIDYEAIRLADV 1237
Query: 451 NKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLK 510
+I+N IKERGMNNMLA RIK+FLNRLV DHGS+DLEWLRDVPPDKAK+YLLS RGLGLK
Sbjct: 1238 REISNAIKERGMNNMLAERIKEFLNRLVTDHGSIDLEWLRDVPPDKAKDYLLSVRGLGLK 1297
Query: 511 SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP 570
SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP
Sbjct: 1298 SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP 1357
Query: 571 RLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEE 630
RLCKLDQRTLYELHYQ+ITFGKVFCTKSKPNCNACPMRGEC+HFASAFAS+RLALP P+E
Sbjct: 1358 RLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECKHFASAFASARLALPAPDE 1417
Query: 631 KAIVSANENRTNTQNPAMMINQLPLPLTHATDLPVGKLEIAVNNCEPIIEEPATPEPERV 690
K IV++ + + P ++ N PLP+ + + CEPI+E PATPEPE
Sbjct: 1418 KGIVASTNPMSTEKQPPIVTN--PLPILPPEGSTYAENTSGPSKCEPIVEVPATPEPEPN 1475
Query: 691 QVSENDIEDTFCEDPEEIPTIKLNMKEFTQTLQNYMQENLELQEGDMSKALVALTAGAAS 750
+++E+DIED F EDP+EIPTIKL+M+EF TLQ+Y + EGDMSKALVAL AA
Sbjct: 1476 EITESDIEDAFYEDPDEIPTIKLSMEEFKTTLQHY------IPEGDMSKALVALNPEAAF 1529
Query: 751 IPAPKLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPE 810
IP PKLKNVSRLRTEHQVYELPDSHPLLR M++REPDDP YLLAIWTPGETANSIQPPE
Sbjct: 1530 IPTPKLKNVSRLRTEHQVYELPDSHPLLREMDRREPDDPSPYLLAIWTPGETANSIQPPE 1589
Query: 811 SRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVF 870
C SQ+ ++C+E TCF+CNS RE+ Q VRGT+L+PCRTAMRGSFPLNGTYFQVNE+F
Sbjct: 1590 QSCGSQDPNRLCNEITCFTCNSRREANSQTVRGTLLVPCRTAMRGSFPLNGTYFQVNEMF 1649
Query: 871 ADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQK 930
ADH+SS+KPI+VPR+WLWNLPRRTVYFGTS+ +IFKGL TE IQ CFWRG+VCVRGFDQK
Sbjct: 1650 ADHESSMKPIDVPRKWLWNLPRRTVYFGTSVSTIFKGLVTEEIQQCFWRGFVCVRGFDQK 1709
Query: 931 SRAPRPLMARLHFPASKLNKV 951
+RAPRPL+ARLHFPASKL KV
Sbjct: 1710 TRAPRPLIARLHFPASKLAKV 1730
>gi|449501064|ref|XP_004161268.1| PREDICTED: uncharacterized protein LOC101230418 [Cucumis sativus]
Length = 1768
Score = 915 bits (2365), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/582 (74%), Positives = 490/582 (84%), Gaps = 13/582 (2%)
Query: 387 FSKELNGIDDATSKSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVR 446
S E + A+S+S+S +V+KEK N +WD+LR++ E NG ++R E T DSLDWEA+R
Sbjct: 1186 LSNEFKELKPASSRSQSKQVAKEKDN-INWDNLRKRTETNGKTRQRTEDTMDSLDWEAIR 1244
Query: 447 CADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRG 506
CADVN+IA+ I+ERGMNNMLA RIKDFLNRLV+DHGS+DLEWLRDV PD+AKEYLLS RG
Sbjct: 1245 CADVNEIAHAIRERGMNNMLAERIKDFLNRLVKDHGSIDLEWLRDVEPDQAKEYLLSIRG 1304
Query: 507 LGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQK 566
LGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQK
Sbjct: 1305 LGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQK 1364
Query: 567 YLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALP 626
YLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFAS+RL LP
Sbjct: 1365 YLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLGLP 1424
Query: 627 GPEEKAIVSANENRTNTQNPAMMINQ--LPLPLTHATDLPVGKLE-------IAVNNCEP 677
PE+K IVS E R N I+Q L LP + + + + E C P
Sbjct: 1425 APEDKRIVSTTECREPDNNQPRTIDQPMLSLPPSTISSVEIKPSESHQSDGKTTAGACVP 1484
Query: 678 IIEEPATPEPER-VQVSENDIEDTFCEDPEEIPTIKLNMKEFTQTLQNYMQENLELQEGD 736
IIEEPATPE E Q + DIED F EDP+EIPTIKLN++EF+Q LQNY+Q+N+ELQEGD
Sbjct: 1485 IIEEPATPEQETATQDAIIDIEDAFYEDPDEIPTIKLNIEEFSQNLQNYVQKNMELQEGD 1544
Query: 737 MSKALVALTAGAASIPAPKLKNVSRLRTEHQVYELPDSHPLLR--GMEKREPDDPGRYLL 794
MSKAL+ALT AASIP PKLKNVSRLRTEHQVYELPD+HPLL +++REPDDP YLL
Sbjct: 1545 MSKALIALTPEAASIPTPKLKNVSRLRTEHQVYELPDNHPLLEKLKLDRREPDDPSSYLL 1604
Query: 795 AIWTPGETANSIQPPESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMR 854
AIWTPGETANSIQ PE RCSSQEH ++C E+ C SCNSVRE+ +VRGT+LIPCRTAMR
Sbjct: 1605 AIWTPGETANSIQLPEKRCSSQEHHQLCCEEECLSCNSVREANSFMVRGTLLIPCRTAMR 1664
Query: 855 GSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQ 914
GSFPLNGTYFQVNEVFADH+SSL PI+VPR+W+WNLPRRTVYFGTSIP+IFKGL+T+GIQ
Sbjct: 1665 GSFPLNGTYFQVNEVFADHESSLNPIDVPRDWIWNLPRRTVYFGTSIPTIFKGLSTQGIQ 1724
Query: 915 HCFWRGYVCVRGFDQKSRAPRPLMARLHFPASKLNKVPGKAD 956
HCFWRG+VCVRGFDQK+RAPRPLMARLHFPASKLN+ GK +
Sbjct: 1725 HCFWRGFVCVRGFDQKTRAPRPLMARLHFPASKLNRGRGKTE 1766
>gi|449451249|ref|XP_004143374.1| PREDICTED: protein ROS1-like [Cucumis sativus]
Length = 1782
Score = 914 bits (2363), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/585 (73%), Positives = 494/585 (84%), Gaps = 11/585 (1%)
Query: 380 QNKYDHSFSKELNGIDDATSKSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDS 439
QNK+DHS S + N K RV KEK+ DWDSLR+QVEA G +++R +T DS
Sbjct: 1196 QNKHDHSLSSKFNDPKSDIIKPNRERVKKEKRVGVDWDSLRKQVEATG-RRDRTTNTMDS 1254
Query: 440 LDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKE 499
LDWEAVRCAD++ IA TI+ERGMNN LA RIKDFL+RLV+DHGS DLEWLRDVPPD+AKE
Sbjct: 1255 LDWEAVRCADIDDIAYTIRERGMNNRLAERIKDFLDRLVKDHGSTDLEWLRDVPPDQAKE 1314
Query: 500 YLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
YLLS RGLGLKSVECVRLLTL +AFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP
Sbjct: 1315 YLLSIRGLGLKSVECVRLLTLQQVAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 1374
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFA 619
VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFA
Sbjct: 1375 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFA 1434
Query: 620 SSRLALPGPEEKAIVSANENRTNTQNPAMMINQLPLPLTHATDLPVGKLE--IAV----N 673
S+RL+LP PEEK++++A E + + N A++++Q PL LT ++ P+ ++ I+V +
Sbjct: 1435 SARLSLPAPEEKSLINATERKADI-NQAVVVHQQPLALTQESE-PIESIQQLISVKSGGS 1492
Query: 674 NCEPIIEEPATPEPERVQVSENDIEDTFCEDPEEIPTIKLNMKEFTQTLQNYMQENLELQ 733
N +PIIEEP TPEPE Q+SE DIEDT EDP+EIPTIKLN++ FT+ +QNYMQEN+ELQ
Sbjct: 1493 NKDPIIEEPQTPEPECPQISEIDIEDTLYEDPDEIPTIKLNIEAFTKHVQNYMQENMELQ 1552
Query: 734 EGDMSKALVALTAGAASIPAPKLKNVSRLRTEHQVYELPDSHPLLRG--MEKREPDDPGR 791
EG MSKALV L+ AASIP PKLKN+SRLRTEHQVYELPDSHPLL +E+REPDDP
Sbjct: 1553 EGSMSKALVLLSPEAASIPMPKLKNISRLRTEHQVYELPDSHPLLEKLQLERREPDDPCF 1612
Query: 792 YLLAIWTPGETANSIQPPESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRT 851
YLLAIWTPGETANS++ + CSSQE G +C EK CFSCNSVRE + ++VRGT+LIPCRT
Sbjct: 1613 YLLAIWTPGETANSVEQLHAHCSSQESGGLCGEKECFSCNSVREPDSEVVRGTLLIPCRT 1672
Query: 852 AMRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTE 911
AMRGSFPLNGTYFQVNEVFADHDSSL PI+VPR WLW L RRTVYFGTSIP+IFKGL+TE
Sbjct: 1673 AMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPRSWLWKLSRRTVYFGTSIPTIFKGLSTE 1732
Query: 912 GIQHCFWRGYVCVRGFDQKSRAPRPLMARLHFPASKLNKVPGKAD 956
IQ CFW+GYVCVRGFDQ +RAPRPL+ARLHFPASK+ ++ GK D
Sbjct: 1733 EIQGCFWKGYVCVRGFDQTTRAPRPLIARLHFPASKMTRIKGKTD 1777
Score = 45.4 bits (106), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 20 SSAFMSLAANFPLNSK--QKPCHGEEITSVIEEPAEYVLDPEDTIEWKEKMSHQPVCDQG 77
SSAFMSLAA +PL SK + E+ + ++ E + ED++ W +++S Q +C Q
Sbjct: 821 SSAFMSLAARYPLKSKSLHESSVDEQTSLILNESQVTLCQAEDSVIWAKQISDQSICKQS 880
Query: 78 SMTLHGSESSEE 89
T+ + +EE
Sbjct: 881 CTTVCEIDQAEE 892
>gi|255580114|ref|XP_002530889.1| conserved hypothetical protein [Ricinus communis]
gi|223529542|gb|EEF31495.1| conserved hypothetical protein [Ricinus communis]
Length = 1876
Score = 892 bits (2304), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 509/944 (53%), Positives = 618/944 (65%), Gaps = 78/944 (8%)
Query: 20 SSAFMSLAANFPLNS-KQKPCHGEEITSVIEEPAEYVLDPEDTIEWKEKMSHQPVCDQGS 78
SSAFM+LAA FPL S + + C +E +I+EP Y+L+P TI+W EK+ P +Q S
Sbjct: 945 SSAFMNLAAKFPLKSMRNRTCERDEPRRLIQEPDIYMLNPNPTIKWHEKLL-TPFYNQSS 1003
Query: 79 MTLHGSESSEEREVVSSNNSLESSTSVVSSINESKCKLMNSSEIYPETYNDVLSSPNSLD 138
MT H ES E R S TS+V + + S PE +VLSS +S D
Sbjct: 1004 MTPH--ESIEHRR--DQETSCTERTSIVEAHSYS-----------PE--EEVLSSQDSFD 1046
Query: 139 SSFAPFADGTISS-SNSNSDAGDSSNVPTLN-SFNGSNS----FVELLQMV-GSTMLHGN 191
SS ++G I S S SN +A D + N + N SN+ F E V G ++ H
Sbjct: 1047 SSIVQ-SNGVIRSYSGSNLEAEDPAKGCKHNENHNTSNAQKLEFEEFFSHVSGRSLFH-- 1103
Query: 192 YNHRNGHMSSDENSKDEHSQFQTLESNTQRVKVKDIDDPKVLSRVSSIPPSSFHPCLTQD 251
E S+ H + + LE Q ++ +D+ S S +
Sbjct: 1104 -----------EGSRHRHRELEDLEDGQQWTRLDRLDN----SLKGSSTFNQHDNSNNSQ 1148
Query: 252 LSVEVESYEMRREETRSSGISDVTDKIALMPEFASQTTDATKLI--VAGPEAPRHGNKQS 309
L VES ++ RE++ SS T K+ + + + + VA P ++G+++
Sbjct: 1149 LQTRVESSQLYREDSISS-WPSSTSKVGKEKDASCTSIRVLQGAENVAKPTTQQYGSEKY 1207
Query: 310 RNSMQANKNSI-------AQHESELF-GDSRFAMEPPAHAQKNDLNLPKISSGSIDAIES 361
+ A ++ Q +L+ G M + P S + D +S
Sbjct: 1208 PETSTAESHAFLCKQLMHEQSNPQLYHGSQSHEMNKTFQLGSKSIAEPVNLSDAQDYRQS 1267
Query: 362 HNALYNRENTQLKSSVSD---------------QNKYDHSFSKE----LNGIDDATSKSK 402
+ QL + V D +N + S SKE N + + SK
Sbjct: 1268 SYGQHVSNIPQLAAKVFDVEERITLMDNKQTDSENNFIGSNSKENTHFTNKANLNRNASK 1327
Query: 403 STRVSKE--KQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKER 460
+ + E +++ DWDSLR+QV NG KKER E DSLD+EA+R A VN+I++TIKER
Sbjct: 1328 ARKAKAESGQKDAVDWDSLRKQVLVNGRKKERSESAMDSLDYEAMRSAHVNEISDTIKER 1387
Query: 461 GMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTL 520
GMNNMLA RIKDFLNRLVR+HGS+DLEWLRDVPPDKAKEYLLS RGLGLKSVECVRLLTL
Sbjct: 1388 GMNNMLAERIKDFLNRLVREHGSIDLEWLRDVPPDKAKEYLLSIRGLGLKSVECVRLLTL 1447
Query: 521 HHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTL 580
HHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP+LESIQKYLWPRLCKLDQRTL
Sbjct: 1448 HHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPILESIQKYLWPRLCKLDQRTL 1507
Query: 581 YELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANENR 640
YELHYQMITFGKVFCTKS+PNCNACPMR ECRHFASAFAS+RLALPGPE+K+IV+A
Sbjct: 1508 YELHYQMITFGKVFCTKSRPNCNACPMRAECRHFASAFASARLALPGPEDKSIVTATVPL 1567
Query: 641 TNTQNPAMMINQLPLPLTHATDLPVGKLEIAVNNCEPIIEEPATPEPERVQVSENDIEDT 700
T ++P ++I+ PLPL A D + + + +C PIIEEPATPE E +V E+DIED
Sbjct: 1568 TTERSPGIVID--PLPLPPAEDNLLTRRGSDIVSCVPIIEEPATPEQEHTEVIESDIEDI 1625
Query: 701 FCEDPEEIPTIKLNMKEFTQTLQNYMQENLELQEGDMSKALVALTAGAASIPAPKLKNVS 760
F EDP+EIPTIKLNM+E T LQNYMQ N+ELQE DMSKALVAL AASIP PKLKNVS
Sbjct: 1626 FDEDPDEIPTIKLNMEELTVNLQNYMQANMELQECDMSKALVALNPEAASIPTPKLKNVS 1685
Query: 761 RLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQEHGK 820
RLRTEHQVYELPDSHPLL M+KR+PDDP YLLAIWTPGETANSIQPPE C Q K
Sbjct: 1686 RLRTEHQVYELPDSHPLLNRMDKRQPDDPSPYLLAIWTPGETANSIQPPERHCQFQGPDK 1745
Query: 821 MCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPI 880
+C+E+TCFSCNS+RE+ Q VRGT+LIPCRTAMRGSFPLNGTYFQVNEVFADH+SSL PI
Sbjct: 1746 LCNEQTCFSCNSIRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHESSLNPI 1805
Query: 881 NVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCV 924
+VPR W+WNLPRR VYFGTS+ +IFKGL+TEGIQ+CFW+G V
Sbjct: 1806 DVPRAWIWNLPRRMVYFGTSVSTIFKGLSTEGIQYCFWKGAYAV 1849
>gi|330370551|gb|AEC12445.1| DNA N-glycosylase/DNA-(apurinic or apyrimidinic site) lyase
[Gossypium hirsutum]
Length = 2055
Score = 876 bits (2263), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/544 (75%), Positives = 459/544 (84%), Gaps = 5/544 (0%)
Query: 385 HSFSKELNGIDDATSKSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEA 444
HS +L + ++ K K + + K N DWD LR+QV+ANG KKER + T DSLD+EA
Sbjct: 1517 HSSENQLG--ESSSLKPKRRKAQEGKNNATDWDQLRKQVQANGLKKERSKDTMDSLDYEA 1574
Query: 445 VRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSF 504
+R A+VN+I+NTIKERGMNNMLA RIKDFLNRLVRDH S+DLEWLRDVPPDKAK+YLLS
Sbjct: 1575 MRNANVNEISNTIKERGMNNMLAERIKDFLNRLVRDHESIDLEWLRDVPPDKAKDYLLSI 1634
Query: 505 RGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESI 564
RGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQP PESLQLHLLELYP+LESI
Sbjct: 1635 RGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPPPESLQLHLLELYPILESI 1694
Query: 565 QKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLA 624
QKYLWPRLCKLDQ TLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFA AFAS+R A
Sbjct: 1695 QKYLWPRLCKLDQYTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFAGAFASARFA 1754
Query: 625 LPGPEEKAIVSANENRTNTQNPAMMINQLPLPLTHATDLPVGKLEIAVNNCEPIIEEPAT 684
LPGPEE++I S+ + NP +NQ+PLP L VG V N EPIIEEP T
Sbjct: 1755 LPGPEERSITSSTAPMISETNPTRAVNQIPLPPPVHNLLKVGP---NVGNNEPIIEEPTT 1811
Query: 685 PEPERVQVSENDIEDTFCEDPEEIPTIKLNMKEFTQTLQNYMQENLELQEGDMSKALVAL 744
PEPE + SE+D ED +DP+EIPTIKLN++EFT LQ+YMQ N+E QEGD+SKALVAL
Sbjct: 1812 PEPEHAEGSESDTEDACYDDPDEIPTIKLNIEEFTANLQHYMQGNMEPQEGDLSKALVAL 1871
Query: 745 TAGAASIPAPKLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETAN 804
AASIP PKLKNVSRLRTEH VYELPD HPLL+ MEKREPDDP YLLAIWTPGETAN
Sbjct: 1872 NPNAASIPTPKLKNVSRLRTEHCVYELPDKHPLLKQMEKREPDDPSPYLLAIWTPGETAN 1931
Query: 805 SIQPPESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYF 864
SIQPPE C SQE G++C+EKTCF+CNSVRE+ + VRGTILIPCRTAMRGSFPLNGTYF
Sbjct: 1932 SIQPPEQSCGSQEPGRLCNEKTCFACNSVREANTETVRGTILIPCRTAMRGSFPLNGTYF 1991
Query: 865 QVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCV 924
QVNEVFADHDSSL P++VPREW+WNLPRRTVYFGTS+ SIFKGL+TEGIQ+CFW+G+VCV
Sbjct: 1992 QVNEVFADHDSSLNPVDVPREWIWNLPRRTVYFGTSVSSIFKGLSTEGIQYCFWKGFVCV 2051
Query: 925 RGFD 928
RGFD
Sbjct: 2052 RGFD 2055
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 85/193 (44%), Gaps = 27/193 (13%)
Query: 20 SSAFMSLAANFPLNSKQKP-CHGEEITSVIEEPAEYVLDPEDTIEWKEKMSHQPVCDQGS 78
SSAFMSLAA FPL S K C+ E T +IEEP L+ E+TI+W EK + Q S
Sbjct: 1103 SSAFMSLAAKFPLKSSCKGDCNAERTTILIEEPEVCELNSEETIKWHEKPFRHQLDSQSS 1162
Query: 79 MTLHGSESSEEREVVSSNNSLESSTSVVSSINESKCKLMNSSEIYPETYNDVLSSPNSLD 138
MT + S + +S S TS + + ++S +VLSS S D
Sbjct: 1163 MTPNRSTDYQR----NSEYSGIERTSFMGTYSQS-------------LEEEVLSSQGSFD 1205
Query: 139 SSFAPFADGTISSSNSNSDAGD--------SSNVPTLNSFNGSNSFVELLQMV-GSTMLH 189
SS G + S S S+ D S + TL+ S S E GS+ LH
Sbjct: 1206 SSVIQANGGIRTYSGSYSETEDPTMSCKFLSIHGSTLDQIENSASVEEFYHCASGSSQLH 1265
Query: 190 GNYNHRNGHMSSD 202
++ ++ +
Sbjct: 1266 EGIKYKQSEVTEE 1278
>gi|218187756|gb|EEC70183.1| hypothetical protein OsI_00912 [Oryza sativa Indica Group]
Length = 1952
Score = 858 bits (2218), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/576 (70%), Positives = 471/576 (81%), Gaps = 28/576 (4%)
Query: 399 SKSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIK 458
SK+K RV K+ +DWD LR++V + G KER ++ KDS+DWE +R A+V +I++TI+
Sbjct: 1386 SKAKRPRVGAGKKKTYDWDMLRKEVLYSHGNKERSQNAKDSIDWETIRQAEVKEISDTIR 1445
Query: 459 ERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLL 518
ERGMNNMLA RIKDFLNRLVRDHGS+DLEWLR V DKAK+YLLS RGLGLKSVECVRLL
Sbjct: 1446 ERGMNNMLAERIKDFLNRLVRDHGSIDLEWLRYVDSDKAKDYLLSIRGLGLKSVECVRLL 1505
Query: 519 TLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQR 578
TLHH+AFPVDTNVGRI VRLGWVPLQPLPESLQLHLLE+YP+LE+IQKYLWPRLCKLDQR
Sbjct: 1506 TLHHMAFPVDTNVGRICVRLGWVPLQPLPESLQLHLLEMYPMLENIQKYLWPRLCKLDQR 1565
Query: 579 TLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANE 638
TLYELHYQMITFGKVFCTKSKPNCNACPMR EC+HFASAFAS+RLALPGPEEK++V+
Sbjct: 1566 TLYELHYQMITFGKVFCTKSKPNCNACPMRAECKHFASAFASARLALPGPEEKSLVT--- 1622
Query: 639 NRTNTQNPAMMINQLPLPLTHATDLP-VGKLEIAVNNC-------EPIIEEPATPEPER- 689
+ T A +Q T+ + P V +LE N C +PIIEEPA+PEPE
Sbjct: 1623 --SGTPIAAETFHQ-----TYISSRPVVSQLEWNSNTCHHGMNNRQPIIEEPASPEPEHE 1675
Query: 690 -VQVSENDIEDTFCEDPEEIPTIKLNMKEFTQTLQNYMQ-ENLELQEGDMSKALVALTAG 747
++ E IED+F +DPEEIPTIKLN +EFTQ L++YMQ N+E+++ DMSKALVA+T
Sbjct: 1676 TEEMKECAIEDSFVDDPEEIPTIKLNFEEFTQNLKSYMQANNIEIEDADMSKALVAITPE 1735
Query: 748 AASIPAPKLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQ 807
ASIP PKLKNVSRLRTEHQVYELPDSHPLL G +REPDDP YLL+IWTPGETA S
Sbjct: 1736 VASIPTPKLKNVSRLRTEHQVYELPDSHPLLEGFNQREPDDPCPYLLSIWTPGETAQSTD 1795
Query: 808 PPESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVN 867
P+S C+SQE+G++C TCFSCNS+RE++ Q VRGT+LIPCRTAMRGSFPLNGTYFQVN
Sbjct: 1796 APKSVCNSQENGELCASNTCFSCNSIREAQAQKVRGTLLIPCRTAMRGSFPLNGTYFQVN 1855
Query: 868 EVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGF 927
EVFADHDSS PI+VPR W+WNLPRRTVYFGTSIP+IFKGLTTE IQHCFWRG+VCVRGF
Sbjct: 1856 EVFADHDSSRNPIDVPRSWIWNLPRRTVYFGTSIPTIFKGLTTEEIQHCFWRGFVCVRGF 1915
Query: 928 DQKSRAPRPLMARLHFPASKLNK-------VPGKAD 956
D+ SRAPRPL ARLHFPASK+ + PG+ D
Sbjct: 1916 DRTSRAPRPLYARLHFPASKITRNKKSAGSAPGRDD 1951
>gi|145334291|ref|NP_001078527.1| transcriptional activator DEMETER [Arabidopsis thaliana]
gi|108935833|sp|Q8LK56.2|DME_ARATH RecName: Full=Transcriptional activator DEMETER; AltName: Full=DNA
glycosylase-related protein DME
gi|84782664|gb|ABC61677.1| DNA glycosylase DEMETER [Arabidopsis thaliana]
gi|332003378|gb|AED90761.1| transcriptional activator DEMETER [Arabidopsis thaliana]
Length = 1987
Score = 857 bits (2214), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 475/959 (49%), Positives = 614/959 (64%), Gaps = 49/959 (5%)
Query: 20 SSAFMSLAANFPLNSKQKPCHGEEITSVI-EEPAEYVLDPEDTIEWKEKMSHQPVCDQGS 78
SSAFMSLAA FP + SV+ E+P +L+ + W+EK+ H
Sbjct: 1043 SSAFMSLAARFPPKLSSSREDERNVRSVVVEDPEGCILNLNEIPSWQEKVQHP-----SD 1097
Query: 79 MTLHGSESSEEREVVSSNNSLESSTSVVSSINESKCKLMNSSEIYPETYNDVLSSPNSLD 138
M + G +S + ++ +NS + N + + N E +VLSS +S D
Sbjct: 1098 MEVSGVDSGSKEQLRDCSNS------GIERFNFLEKSIQNLEE-------EVLSSQDSFD 1144
Query: 139 SSFAPFADGTISSSNSNSDAGDSSNVPTLNSFNGSNSFVELL--QMVGSTMLHGNYNHRN 196
+ S S S SDA + + +G++ V+ + L GN
Sbjct: 1145 PAIFQSCGRVGSCSCSKSDAEFPTTRCETKTVSGTSQSVQTGSPNLSDEICLQGNERPHL 1204
Query: 197 GHMSSDENSKDEHSQFQTLESNTQRVKVKD---IDDPKVLSRVSSIPPSSFHPCLTQDLS 253
S D ++ + Q + + KD P+ + + P SS+ C T+
Sbjct: 1205 YEGSGDVQKQETTNVAQKKPDLEKTMNWKDSVCFGQPRNDTNWQTTPSSSYEQCATRQPH 1264
Query: 254 V-EVESYEMRREETRSS--GISDVTDKIAL--MPEFASQTTDATKLIVAGPEAPRHGNKQ 308
V ++E + M+ E S IS D++ +P + + G P ++
Sbjct: 1265 VLDIEDFGMQGEGLGYSWMSISPRVDRVKNKNVPRRFFRQGGSVPREFTGQIIPSTPHEL 1324
Query: 309 SRNSMQANKNSIAQHESELFGDSRFAMEPPAHAQKNDLNLPKISSGSIDAIESH-----N 363
+ + +++ +H+ + + + M +H QK L+L S + S +
Sbjct: 1325 PGMGLSGSSSAVQEHQDDTQHNQQDEMNKASHLQKTFLDLLNSSEECLTRQSSTKQNITD 1384
Query: 364 ALYNRENTQ------LKSSVSDQNKY--DHSFSKELNGIDDATSKSKSTR-----VSKEK 410
R+ T L ++ S QN +S +KE ++ + + R ++ K
Sbjct: 1385 GCLPRDRTAEDVVDPLSNNSSLQNILVESNSSNKEQTAVEYKETNATILREMKGTLADGK 1444
Query: 411 QNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRI 470
+ WDSLR+ VE N G++ER ++ DS+D+EA+R A +++I+ IKERGMNNMLA RI
Sbjct: 1445 KPTSQWDSLRKDVEGNEGRQERNKNNMDSIDYEAIRRASISEISEAIKERGMNNMLAVRI 1504
Query: 471 KDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTN 530
KDFL R+V+DHG +DLEWLR+ PPDKAK+YLLS RGLGLKSVECVRLLTLH+LAFPVDTN
Sbjct: 1505 KDFLERIVKDHGGIDLEWLRESPPDKAKDYLLSIRGLGLKSVECVRLLTLHNLAFPVDTN 1564
Query: 531 VGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITF 590
VGRIAVR+GWVPLQPLPESLQLHLLELYPVLESIQK+LWPRLCKLDQRTLYELHYQ+ITF
Sbjct: 1565 VGRIAVRMGWVPLQPLPESLQLHLLELYPVLESIQKFLWPRLCKLDQRTLYELHYQLITF 1624
Query: 591 GKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANENRTNTQNPAMMI 650
GKVFCTKS+PNCNACPMRGECRHFASA+AS+RLALP PEE+++ SA P + I
Sbjct: 1625 GKVFCTKSRPNCNACPMRGECRHFASAYASARLALPAPEERSLTSATIPVPPESYPPVAI 1684
Query: 651 NQLPLPLTHATDLPVGKLEIAVNNCEPIIEEPATPEPERVQVSENDIEDTFC-EDPEEIP 709
+ LPL L G NCEPIIEEPA+P E +++E+DIED + EDP+EIP
Sbjct: 1685 PMIELPLPLEKSLASGAPS-NRENCEPIIEEPASPGQECTEITESDIEDAYYNEDPDEIP 1743
Query: 710 TIKLNMKEFTQTLQNYMQENLELQEGDMSKALVALTAGAASIPAPKLKNVSRLRTEHQVY 769
TIKLN+++F TL+ +M+ N+ELQEGDMSKALVAL SIP PKLKN+SRLRTEHQVY
Sbjct: 1744 TIKLNIEQFGMTLREHMERNMELQEGDMSKALVALHPTTTSIPTPKLKNISRLRTEHQVY 1803
Query: 770 ELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQEHGKMCDEKTCFS 829
ELPDSH LL GM+KREPDDP YLLAIWTPGETANS QPPE +C + GKMC ++TC
Sbjct: 1804 ELPDSHRLLDGMDKREPDDPSPYLLAIWTPGETANSAQPPEQKCGGKASGKMCFDETCSE 1863
Query: 830 CNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWN 889
CNS+RE+ Q VRGT+LIPCRTAMRGSFPLNGTYFQVNE+FADH+SSLKPI+VPR+W+W+
Sbjct: 1864 CNSLREANSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNELFADHESSLKPIDVPRDWIWD 1923
Query: 890 LPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMARLHFPASKL 948
LPRRTVYFGTS+ SIF+GL+TE IQ CFW+G+VCVRGF+QK+RAPRPLMARLHFPASKL
Sbjct: 1924 LPRRTVYFGTSVTSIFRGLSTEQIQFCFWKGFVCVRGFEQKTRAPRPLMARLHFPASKL 1982
>gi|30680560|ref|NP_196076.2| transcriptional activator DEMETER [Arabidopsis thaliana]
gi|332003377|gb|AED90760.1| transcriptional activator DEMETER [Arabidopsis thaliana]
Length = 1729
Score = 857 bits (2213), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 475/959 (49%), Positives = 614/959 (64%), Gaps = 49/959 (5%)
Query: 20 SSAFMSLAANFPLNSKQKPCHGEEITSVI-EEPAEYVLDPEDTIEWKEKMSHQPVCDQGS 78
SSAFMSLAA FP + SV+ E+P +L+ + W+EK+ H
Sbjct: 785 SSAFMSLAARFPPKLSSSREDERNVRSVVVEDPEGCILNLNEIPSWQEKVQHP-----SD 839
Query: 79 MTLHGSESSEEREVVSSNNSLESSTSVVSSINESKCKLMNSSEIYPETYNDVLSSPNSLD 138
M + G +S + ++ +NS + N + + N E +VLSS +S D
Sbjct: 840 MEVSGVDSGSKEQLRDCSNS------GIERFNFLEKSIQNLEE-------EVLSSQDSFD 886
Query: 139 SSFAPFADGTISSSNSNSDAGDSSNVPTLNSFNGSNSFVELL--QMVGSTMLHGNYNHRN 196
+ S S S SDA + + +G++ V+ + L GN
Sbjct: 887 PAIFQSCGRVGSCSCSKSDAEFPTTRCETKTVSGTSQSVQTGSPNLSDEICLQGNERPHL 946
Query: 197 GHMSSDENSKDEHSQFQTLESNTQRVKVKD---IDDPKVLSRVSSIPPSSFHPCLTQDLS 253
S D ++ + Q + + KD P+ + + P SS+ C T+
Sbjct: 947 YEGSGDVQKQETTNVAQKKPDLEKTMNWKDSVCFGQPRNDTNWQTTPSSSYEQCATRQPH 1006
Query: 254 V-EVESYEMRREETRSS--GISDVTDKIAL--MPEFASQTTDATKLIVAGPEAPRHGNKQ 308
V ++E + M+ E S IS D++ +P + + G P ++
Sbjct: 1007 VLDIEDFGMQGEGLGYSWMSISPRVDRVKNKNVPRRFFRQGGSVPREFTGQIIPSTPHEL 1066
Query: 309 SRNSMQANKNSIAQHESELFGDSRFAMEPPAHAQKNDLNLPKISSGSIDAIESH-----N 363
+ + +++ +H+ + + + M +H QK L+L S + S +
Sbjct: 1067 PGMGLSGSSSAVQEHQDDTQHNQQDEMNKASHLQKTFLDLLNSSEECLTRQSSTKQNITD 1126
Query: 364 ALYNRENTQ------LKSSVSDQNKY--DHSFSKELNGIDDATSKSKSTR-----VSKEK 410
R+ T L ++ S QN +S +KE ++ + + R ++ K
Sbjct: 1127 GCLPRDRTAEDVVDPLSNNSSLQNILVESNSSNKEQTAVEYKETNATILREMKGTLADGK 1186
Query: 411 QNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRI 470
+ WDSLR+ VE N G++ER ++ DS+D+EA+R A +++I+ IKERGMNNMLA RI
Sbjct: 1187 KPTSQWDSLRKDVEGNEGRQERNKNNMDSIDYEAIRRASISEISEAIKERGMNNMLAVRI 1246
Query: 471 KDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTN 530
KDFL R+V+DHG +DLEWLR+ PPDKAK+YLLS RGLGLKSVECVRLLTLH+LAFPVDTN
Sbjct: 1247 KDFLERIVKDHGGIDLEWLRESPPDKAKDYLLSIRGLGLKSVECVRLLTLHNLAFPVDTN 1306
Query: 531 VGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITF 590
VGRIAVR+GWVPLQPLPESLQLHLLELYPVLESIQK+LWPRLCKLDQRTLYELHYQ+ITF
Sbjct: 1307 VGRIAVRMGWVPLQPLPESLQLHLLELYPVLESIQKFLWPRLCKLDQRTLYELHYQLITF 1366
Query: 591 GKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANENRTNTQNPAMMI 650
GKVFCTKS+PNCNACPMRGECRHFASA+AS+RLALP PEE+++ SA P + I
Sbjct: 1367 GKVFCTKSRPNCNACPMRGECRHFASAYASARLALPAPEERSLTSATIPVPPESYPPVAI 1426
Query: 651 NQLPLPLTHATDLPVGKLEIAVNNCEPIIEEPATPEPERVQVSENDIEDTFC-EDPEEIP 709
+ LPL L G NCEPIIEEPA+P E +++E+DIED + EDP+EIP
Sbjct: 1427 PMIELPLPLEKSLASGAPS-NRENCEPIIEEPASPGQECTEITESDIEDAYYNEDPDEIP 1485
Query: 710 TIKLNMKEFTQTLQNYMQENLELQEGDMSKALVALTAGAASIPAPKLKNVSRLRTEHQVY 769
TIKLN+++F TL+ +M+ N+ELQEGDMSKALVAL SIP PKLKN+SRLRTEHQVY
Sbjct: 1486 TIKLNIEQFGMTLREHMERNMELQEGDMSKALVALHPTTTSIPTPKLKNISRLRTEHQVY 1545
Query: 770 ELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQEHGKMCDEKTCFS 829
ELPDSH LL GM+KREPDDP YLLAIWTPGETANS QPPE +C + GKMC ++TC
Sbjct: 1546 ELPDSHRLLDGMDKREPDDPSPYLLAIWTPGETANSAQPPEQKCGGKASGKMCFDETCSE 1605
Query: 830 CNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWN 889
CNS+RE+ Q VRGT+LIPCRTAMRGSFPLNGTYFQVNE+FADH+SSLKPI+VPR+W+W+
Sbjct: 1606 CNSLREANSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNELFADHESSLKPIDVPRDWIWD 1665
Query: 890 LPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMARLHFPASKL 948
LPRRTVYFGTS+ SIF+GL+TE IQ CFW+G+VCVRGF+QK+RAPRPLMARLHFPASKL
Sbjct: 1666 LPRRTVYFGTSVTSIFRGLSTEQIQFCFWKGFVCVRGFEQKTRAPRPLMARLHFPASKL 1724
>gi|21743571|gb|AAM77215.1| DEMETER protein [Arabidopsis thaliana]
Length = 1729
Score = 857 bits (2213), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 475/959 (49%), Positives = 614/959 (64%), Gaps = 49/959 (5%)
Query: 20 SSAFMSLAANFPLNSKQKPCHGEEITSVI-EEPAEYVLDPEDTIEWKEKMSHQPVCDQGS 78
SSAFMSLAA FP + SV+ E+P +L+ + W+EK+ H
Sbjct: 785 SSAFMSLAARFPPKLSSSREDERNVRSVVVEDPEGCILNLNEIPSWQEKVQHP-----SD 839
Query: 79 MTLHGSESSEEREVVSSNNSLESSTSVVSSINESKCKLMNSSEIYPETYNDVLSSPNSLD 138
M + G +S + ++ +NS + N + + N E +VLSS +S D
Sbjct: 840 MEVSGVDSGSKEQLRDCSNS------GIERFNFLEKSIQNLEE-------EVLSSQDSFD 886
Query: 139 SSFAPFADGTISSSNSNSDAGDSSNVPTLNSFNGSNSFVELL--QMVGSTMLHGNYNHRN 196
+ S S S SDA + + +G++ V+ + L GN
Sbjct: 887 PAIFQSCGRVGSCSCSKSDAEFPTTRCETKTVSGTSQSVQTGSPNLSDEICLQGNERPHL 946
Query: 197 GHMSSDENSKDEHSQFQTLESNTQRVKVKD---IDDPKVLSRVSSIPPSSFHPCLTQDLS 253
S D ++ + Q + + KD P+ + + P SS+ C T+
Sbjct: 947 YEGSGDVQKQETTNVAQKKPDLEKTMNWKDSVCFGQPRNDTNWQTTPSSSYEQCATRQPH 1006
Query: 254 V-EVESYEMRREETRSS--GISDVTDKIAL--MPEFASQTTDATKLIVAGPEAPRHGNKQ 308
V ++E + M+ E S IS D++ +P + + G P ++
Sbjct: 1007 VLDIEDFGMQGEGLGYSWMSISPRVDRVKNKNVPRRFFRQGGSVPREFTGQIIPSTPHEL 1066
Query: 309 SRNSMQANKNSIAQHESELFGDSRFAMEPPAHAQKNDLNLPKISSGSIDAIESH-----N 363
+ + +++ +H+ + + + M +H QK L+L S + S +
Sbjct: 1067 PGMGLSGSSSAVQEHQDDTQHNQQDEMNKASHLQKTFLDLLNSSEECLTRQSSTKQNITD 1126
Query: 364 ALYNRENTQ------LKSSVSDQNKY--DHSFSKELNGIDDATSKSKSTR-----VSKEK 410
R+ T L ++ S QN +S +KE ++ + + R ++ K
Sbjct: 1127 GCLPRDRTAEDVVDPLSNNSSLQNILVESNSSNKEQTAVEYKETNATILREMKGTLADGK 1186
Query: 411 QNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRI 470
+ WDSLR+ VE N G++ER ++ DS+D+EA+R A +++I+ IKERGMNNMLA RI
Sbjct: 1187 KPTSQWDSLRKDVEGNEGRQERNKNNMDSIDYEAIRRASISEISEAIKERGMNNMLAVRI 1246
Query: 471 KDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTN 530
KDFL R+V+DHG +DLEWLR+ PPDKAK+YLLS RGLGLKSVECVRLLTLH+LAFPVDTN
Sbjct: 1247 KDFLERIVKDHGGIDLEWLRESPPDKAKDYLLSIRGLGLKSVECVRLLTLHNLAFPVDTN 1306
Query: 531 VGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITF 590
VGRIAVR+GWVPLQPLPESLQLHLLELYPVLESIQK+LWPRLCKLDQRTLYELHYQ+ITF
Sbjct: 1307 VGRIAVRMGWVPLQPLPESLQLHLLELYPVLESIQKFLWPRLCKLDQRTLYELHYQLITF 1366
Query: 591 GKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANENRTNTQNPAMMI 650
GKVFCTKS+PNCNACPMRGECRHFASA+AS+RLALP PEE+++ SA P + I
Sbjct: 1367 GKVFCTKSRPNCNACPMRGECRHFASAYASARLALPAPEERSLTSATIPVPPESFPPVAI 1426
Query: 651 NQLPLPLTHATDLPVGKLEIAVNNCEPIIEEPATPEPERVQVSENDIEDTFC-EDPEEIP 709
+ LPL L G NCEPIIEEPA+P E +++E+DIED + EDP+EIP
Sbjct: 1427 PMIELPLPLEKSLASGAPS-NRENCEPIIEEPASPGQECTEITESDIEDAYYNEDPDEIP 1485
Query: 710 TIKLNMKEFTQTLQNYMQENLELQEGDMSKALVALTAGAASIPAPKLKNVSRLRTEHQVY 769
TIKLN+++F TL+ +M+ N+ELQEGDMSKALVAL SIP PKLKN+SRLRTEHQVY
Sbjct: 1486 TIKLNIEQFGMTLREHMERNMELQEGDMSKALVALHPTTTSIPTPKLKNISRLRTEHQVY 1545
Query: 770 ELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQEHGKMCDEKTCFS 829
ELPDSH LL GM+KREPDDP YLLAIWTPGETANS QPPE +C + GKMC ++TC
Sbjct: 1546 ELPDSHRLLDGMDKREPDDPSPYLLAIWTPGETANSAQPPEQKCGGKASGKMCFDETCSE 1605
Query: 830 CNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWN 889
CNS+RE+ Q VRGT+LIPCRTAMRGSFPLNGTYFQVNE+FADH+SSLKPI+VPR+W+W+
Sbjct: 1606 CNSLREANSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNELFADHESSLKPIDVPRDWIWD 1665
Query: 890 LPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMARLHFPASKL 948
LPRRTVYFGTS+ SIF+GL+TE IQ CFW+G+VCVRGF+QK+RAPRPLMARLHFPASKL
Sbjct: 1666 LPRRTVYFGTSVTSIFRGLSTEQIQFCFWKGFVCVRGFEQKTRAPRPLMARLHFPASKL 1724
>gi|356574657|ref|XP_003555462.1| PREDICTED: transcriptional activator DEMETER-like [Glycine max]
Length = 1851
Score = 853 bits (2204), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 492/990 (49%), Positives = 615/990 (62%), Gaps = 91/990 (9%)
Query: 20 SSAFMSLAANFPLNSKQ-KPCHGEEITSVIEEPAEYVLDPEDTIE-WKEKMSHQPVCDQG 77
SSAFMSLA+ FPL SK K + + ++++E +++P DTI + +QP
Sbjct: 881 SSAFMSLASRFPLQSKSSKKSYDVDTNTLLKEAGLCIVNPADTITPYGSGTLNQPTYHLC 940
Query: 78 SMTLHGSESSEEREVVSSNNSLESSTSVVSSINESKCKLMNSSEIYPETYNDVLSSPNSL 137
T H + RE+ + + S++ N+S + + LS +SL
Sbjct: 941 FETPHHA-----RELWRDSETSRPKGSLIKPNNQS-------------SEEEFLSPQDSL 982
Query: 138 DSSFAPFADGTISSSNSNSDAGDSSNVPTLNSFNGSNSFVELLQMVGSTMLHGNYNHRNG 197
DSS D SS+ ++ + + + + + LQ+ +TM YN NG
Sbjct: 983 DSSIT--QDARNRSSSGSNSESEGLDCRCEHRETQFLTAINSLQVGKTTMFQEFYNSING 1040
Query: 198 HMSSDENSKDEHSQFQTLESNTQRVKVKDIDDPKVLSRVS-----SIPPSSFHPCL---- 248
+E +KD Q E Q + P + S S + PP P +
Sbjct: 1041 VSLFEERNKD--GQLHPEEYVKQNCSIGRNSSPNICSAFSHPNNFAYPPKQL-PVVPSTD 1097
Query: 249 -------TQDL--------------SVEVESYEMRREETRSSGISDVTDKIALMPEFASQ 287
TQ L +V V S E++ + + + D DK M ++A+
Sbjct: 1098 YRLYYSDTQGLKTFQMNGGKFSWTETVSVHS-ELQDNNSGNRKVGDSADKPTEM-QYANG 1155
Query: 288 TTDATKLIVAGPEAP------------RHGNKQSRNSMQANKNSIAQH----ESELFGDS 331
T + ++ P P + G+ + N N + + Q ES F +S
Sbjct: 1156 TLGSPEIPTIDPYGPLSKYLVLPHDTSQFGSHTNYNQPSPNHHLVGQKSLESESREFTNS 1215
Query: 332 RFAMEPPAHAQ----KNDLNLPKISSG-SIDAIESHNALYNRENTQLKSSVSDQNKYDHS 386
Q K+ N+PK + G + I + N+ EN++ +S+ Q +S
Sbjct: 1216 LNTSHILDRCQDDVVKDSGNIPKHAEGLDSEKISAANSQGCSENSRAESNPLKQVYSPNS 1275
Query: 387 FSKELNGIDDATSKSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVR 446
K+ SK + + EK++ DWD LR++V+ N +KER T DSLD+EA+R
Sbjct: 1276 IDKK---SKIKVSKERKAKPETEKKHASDWDKLRKEVQINRIEKERSTDTMDSLDYEAIR 1332
Query: 447 CADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRG 506
CA V +I+ TIKERGMNNMLA RIK+FLNRLV +HGS+DLEWLR VP DKAK+YLLSFRG
Sbjct: 1333 CASVKEISKTIKERGMNNMLAERIKEFLNRLVTEHGSIDLEWLRHVPQDKAKDYLLSFRG 1392
Query: 507 LGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQK 566
LGLKSVECVRLLTLHH+AFPVDTNVGRIAVRLGWVPLQPLPE+LQLHLLELYPVLE++QK
Sbjct: 1393 LGLKSVECVRLLTLHHIAFPVDTNVGRIAVRLGWVPLQPLPEALQLHLLELYPVLETVQK 1452
Query: 567 YLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALP 626
YLWPRLCKLDQRTLYELHYQMITFGKVFCTK KPNCNACPMR ECRHFASAFAS+RLALP
Sbjct: 1453 YLWPRLCKLDQRTLYELHYQMITFGKVFCTKKKPNCNACPMRAECRHFASAFASARLALP 1512
Query: 627 GPEEKAIVSANENRTNTQNPAMMINQLPLPLTHATDLPVGKLEIAVN----NCEPIIEEP 682
GPEEK IVS + +N + N + LPL L VN CEPIIEEP
Sbjct: 1513 GPEEKRIVSMHVPIATERNYFVNENPMVLPLLE------NNLSRQVNPESWQCEPIIEEP 1566
Query: 683 ATPEPERVQVSENDIEDTFCEDPEEIPTIKLNMKEFTQTLQNYMQENLELQEGDMSKALV 742
ATPE E + E+D+ED D +EI +I LN KE T +QN++QE E EGDMSKALV
Sbjct: 1567 ATPEREWKEAEESDMEDFLKVDSDEILSIGLNAKESTVNVQNHLQEYKEHNEGDMSKALV 1626
Query: 743 ALTAGAASIPAPKLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGET 802
AL +ASIP PKLKNVSRLRTEHQVYELPDSHPLL M+KREPDDP YLLAIWTPGET
Sbjct: 1627 ALNPESASIPTPKLKNVSRLRTEHQVYELPDSHPLLEKMDKREPDDPSPYLLAIWTPGET 1686
Query: 803 ANSIQPPESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGT 862
NS++PPE RC SQ+ +C++ TCFSCNS+RE+ Q VRGTILIPCRTA RGSFPLNGT
Sbjct: 1687 PNSVEPPERRCESQDSANLCNDSTCFSCNSIREANSQTVRGTILIPCRTATRGSFPLNGT 1746
Query: 863 YFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYV 922
YFQVNE+FADH SS++PI++PREW+WNLPRRT YFGTS+ SIFKGL+T+ IQHCFWRG+V
Sbjct: 1747 YFQVNELFADHASSVQPIDIPREWIWNLPRRTAYFGTSVSSIFKGLSTQQIQHCFWRGFV 1806
Query: 923 CVRGFDQKSRAPRPLMARLHFPASKLNKVP 952
CVRGFDQK RAPRPL ARLHF AS+ + P
Sbjct: 1807 CVRGFDQKERAPRPLQARLHFSASRFHLTP 1836
>gi|297827133|ref|XP_002881449.1| hypothetical protein ARALYDRAFT_902767 [Arabidopsis lyrata subsp.
lyrata]
gi|297327288|gb|EFH57708.1| hypothetical protein ARALYDRAFT_902767 [Arabidopsis lyrata subsp.
lyrata]
Length = 1619
Score = 850 bits (2195), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/566 (71%), Positives = 468/566 (82%), Gaps = 6/566 (1%)
Query: 386 SFSKELNGIDDATSKSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAV 445
S KELN D AT +K +V KEK+ FDWDSLRR+ E GK+E+ T DS+DWEA+
Sbjct: 1047 SSCKELNPTDAATLNAKGKKVLKEKKEAFDWDSLRREAEGREGKREKTTRTMDSVDWEAI 1106
Query: 446 RCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFR 505
R ADV+++A TIK+RGMN+MLA RI+ FLNRLV +HGS+DLEWLRD+PPDKAKEYLLSFR
Sbjct: 1107 RTADVSEVAETIKKRGMNHMLAERIQGFLNRLVNEHGSIDLEWLRDIPPDKAKEYLLSFR 1166
Query: 506 GLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQ 565
GLGLKSVECVRLLTLHHLAFPVDTNV RIAVRLGWVPLQPLPESLQLHLLE+YP+LESIQ
Sbjct: 1167 GLGLKSVECVRLLTLHHLAFPVDTNVARIAVRLGWVPLQPLPESLQLHLLEMYPILESIQ 1226
Query: 566 KYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLAL 625
KYLWPRLCKLDQ+TLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAF S+RLAL
Sbjct: 1227 KYLWPRLCKLDQKTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFVSARLAL 1286
Query: 626 PGPEEKAIVSANENRTNTQNPAMMINQLPLPLTHATDLPVGKLEIAVNNCEPIIEEPATP 685
P EK + + ++N P + + + ++ P K V CEPIIEEPA+P
Sbjct: 1287 PS-TEKGMGTPDKNPLPLHLPEPLYREQGSEVKQHSE-PAKK----VTCCEPIIEEPASP 1340
Query: 686 EPERVQVSENDIEDTFCEDPEEIPTIKLNMKEFTQTLQNYMQENLELQEGDMSKALVALT 745
EPE QVS DIED F EDPEEIPTI+LN FT L+ +++N ELQ+G+MS ALVALT
Sbjct: 1341 EPESAQVSIADIEDAFFEDPEEIPTIRLNTDAFTSNLKKIIEQNQELQDGNMSTALVALT 1400
Query: 746 AGAASIPAPKLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANS 805
A AA +P PKLKN+S+LRTEHQVYELPDSHPLL +EKREPDDP YLLAIWTPGETA+S
Sbjct: 1401 AEAAYLPMPKLKNISQLRTEHQVYELPDSHPLLVQLEKREPDDPCSYLLAIWTPGETADS 1460
Query: 806 IQPPESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQ 865
IQP S+C SQE+G++CDE+TCFSCNS++E+ Q VRGTILIPCRTAMRGSFPLNGTYFQ
Sbjct: 1461 IQPTVSKCISQENGQICDEETCFSCNSIKEARSQTVRGTILIPCRTAMRGSFPLNGTYFQ 1520
Query: 866 VNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVR 925
VNEVFADH SSL PI+VPRE LW+L RR VYFGTSIP+IFKGL+TE IQ CFWRGYVCVR
Sbjct: 1521 VNEVFADHASSLNPIDVPRETLWDLTRRAVYFGTSIPTIFKGLSTETIQQCFWRGYVCVR 1580
Query: 926 GFDQKSRAPRPLMARLHFPASKLNKV 951
GFD+++R P+PL+ARLHFP SK+ +
Sbjct: 1581 GFDRETRGPKPLIARLHFPVSKMKSL 1606
>gi|297827135|ref|XP_002881450.1| hypothetical protein ARALYDRAFT_482629 [Arabidopsis lyrata subsp.
lyrata]
gi|297327289|gb|EFH57709.1| hypothetical protein ARALYDRAFT_482629 [Arabidopsis lyrata subsp.
lyrata]
Length = 1432
Score = 847 bits (2189), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/535 (73%), Positives = 449/535 (83%), Gaps = 6/535 (1%)
Query: 414 FDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDF 473
FDWDSLRR+ + G +E+ T D++DWEA+R ADV+++A TIK RGMN+ LA RI+ F
Sbjct: 896 FDWDSLRREAQGREGIREKTARTMDTVDWEAIRAADVSEVAETIKSRGMNHKLAERIQGF 955
Query: 474 LNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGR 533
L+RLV DHGS+DLEWLRDVPPDKAKEYLLSF GLGLKSVECVRLLTLHHLAFPVDTNVGR
Sbjct: 956 LDRLVDDHGSIDLEWLRDVPPDKAKEYLLSFNGLGLKSVECVRLLTLHHLAFPVDTNVGR 1015
Query: 534 IAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKV 593
IAVRLGWVPLQPLPESLQLHLLE+YP+LESIQKYLWPRLCKLDQ+TLYELHYQMITFGKV
Sbjct: 1016 IAVRLGWVPLQPLPESLQLHLLEMYPILESIQKYLWPRLCKLDQKTLYELHYQMITFGKV 1075
Query: 594 FCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANENRTNTQNPAMMINQL 653
FCTKSKPNCNACPMRGECRHFASAFAS+RLALP EK + + ++N P + +
Sbjct: 1076 FCTKSKPNCNACPMRGECRHFASAFASARLALPS-TEKGMATPDKNPLPLHLPEPLQREQ 1134
Query: 654 PLPLTHATDLPVGKLEIAVNNCEPIIEEPATPEPERVQVSENDIEDTFCEDPEEIPTIKL 713
+ ++ P K V EPIIEEPA+PEPE QVS DIED F EDPEEIPTI+L
Sbjct: 1135 GSEVVQHSE-PAKK----VTCSEPIIEEPASPEPESAQVSIADIEDAFFEDPEEIPTIRL 1189
Query: 714 NMKEFTQTLQNYMQENLELQEGDMSKALVALTAGAASIPAPKLKNVSRLRTEHQVYELPD 773
NM FT L+ M+ N ELQ+G+MS ALVALTA AAS+P PKLKN+S+LRTEHQVYELPD
Sbjct: 1190 NMDAFTSNLKKLMEHNKELQDGNMSSALVALTAEAASLPIPKLKNISQLRTEHQVYELPD 1249
Query: 774 SHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQEHGKMCDEKTCFSCNSV 833
HPLL +EKREPDDP YLLAIWTPGETA+SIQP S+C Q +GK+CDE+TCFSCNS+
Sbjct: 1250 EHPLLVHLEKREPDDPCSYLLAIWTPGETADSIQPAVSKCIFQANGKLCDEETCFSCNSI 1309
Query: 834 RESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWNLPRR 893
+E+ QIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADH SSL PI+VPREW+W+LPRR
Sbjct: 1310 KEARTQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHASSLNPIDVPREWIWDLPRR 1369
Query: 894 TVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMARLHFPASKL 948
TVYFGTSIP+IFKGL TE IQ CFW+GYVCVRGFD+ +R P+PL+ARLHFPASKL
Sbjct: 1370 TVYFGTSIPTIFKGLPTETIQQCFWKGYVCVRGFDRTTRGPKPLIARLHFPASKL 1424
>gi|193082832|emb|CAQ58412.1| putative transcriptional activator DEMETER [Hordeum vulgare subsp.
vulgare]
Length = 1981
Score = 845 bits (2183), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/607 (68%), Positives = 484/607 (79%), Gaps = 21/607 (3%)
Query: 353 SGSIDAIESHNALYNRENTQ---LKSSVSDQNKYDHSFSKELNGIDDATSKSKSTRVSKE 409
S ++D + LY E L+ SD + +K L + SK+K TR K+
Sbjct: 1370 SSNMDGSHCSSNLYQNEKANSELLQRVASDSIEKPKDTNKALPEVPADRSKTKKTRAGKK 1429
Query: 410 KQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGR 469
+ +DWD LR++V AN G +ER E+ KD+LDWE +R +V +I+NTI+ERGMNNMLA R
Sbjct: 1430 RT--YDWDILRKEVLANRGNEERSENAKDALDWETIRQINVKEISNTIRERGMNNMLAER 1487
Query: 470 IKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDT 529
IKDFLNR+VRDHGS+DLEWLR V PDKAKEYLLS RGLGLKSVECVRLLTLHH+AFPVDT
Sbjct: 1488 IKDFLNRVVRDHGSIDLEWLRHVDPDKAKEYLLSIRGLGLKSVECVRLLTLHHMAFPVDT 1547
Query: 530 NVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMIT 589
NVGRI VRLGWVPLQPLPESLQLHLLELYP+LE+IQKYLWPRLCKLDQRTLYELHYQMIT
Sbjct: 1548 NVGRICVRLGWVPLQPLPESLQLHLLELYPMLENIQKYLWPRLCKLDQRTLYELHYQMIT 1607
Query: 590 FGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANE--NRTNTQNP- 646
FGKVFCTKSKPNCNACPMR EC+HFASAFAS+RLALPGPEEK++V++ + Q P
Sbjct: 1608 FGKVFCTKSKPNCNACPMRAECKHFASAFASARLALPGPEEKSLVTSGNPIASGSCQQPY 1667
Query: 647 --AMMINQLPLPLTHATDLPVGKLEIAVNNCEPIIEEPATPEPER--VQVSENDIEDTFC 702
M +NQL HA D ++NC+PIIEEPA+PEPE ++ E+ IED F
Sbjct: 1668 ISPMRLNQLDWN-AHAHDH-------ILDNCQPIIEEPASPEPEPETAEMRESAIEDIFL 1719
Query: 703 EDPEEIPTIKLNMKEFTQTLQNYMQ-ENLELQEGDMSKALVALTAGAASIPAPKLKNVSR 761
+DPEEIPTIKLN +EF Q L+NYMQ N+E+++ DMS ALVA+T AASIP P+LKNVSR
Sbjct: 1720 DDPEEIPTIKLNFEEFAQNLKNYMQVNNIEMEDADMSSALVAITPEAASIPTPRLKNVSR 1779
Query: 762 LRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQEHGKM 821
LRTEHQVYELPDSHPLL G ++REPDDP YLL+IWTPGETA SI P++ C+S E GK+
Sbjct: 1780 LRTEHQVYELPDSHPLLEGYDQREPDDPCPYLLSIWTPGETAQSIDAPKTACNSNESGKL 1839
Query: 822 CDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPIN 881
CD CFSCNS+RE++ Q VRGTIL+PCRTAMRGSFPLNGTYFQVNEVFADHDSS P++
Sbjct: 1840 CDSSACFSCNSMREAQAQTVRGTILVPCRTAMRGSFPLNGTYFQVNEVFADHDSSRNPVD 1899
Query: 882 VPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMARL 941
VPR W+W+LPRRTVYFGTS+PSIFKGLTTE IQ CFWRG+VCVRGFD+ SRAPRPL ARL
Sbjct: 1900 VPRRWIWDLPRRTVYFGTSVPSIFKGLTTEDIQQCFWRGFVCVRGFDRTSRAPRPLYARL 1959
Query: 942 HFPASKL 948
HFPASK+
Sbjct: 1960 HFPASKI 1966
>gi|297806437|ref|XP_002871102.1| hypothetical protein ARALYDRAFT_487239 [Arabidopsis lyrata subsp.
lyrata]
gi|297316939|gb|EFH47361.1| hypothetical protein ARALYDRAFT_487239 [Arabidopsis lyrata subsp.
lyrata]
Length = 1997
Score = 843 bits (2179), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/536 (72%), Positives = 455/536 (84%), Gaps = 4/536 (0%)
Query: 416 WDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLN 475
WDSLR+ VE N G+KER + + DS+D+EA+R A +++I++ IKERGMNNMLA RIKDFL
Sbjct: 1458 WDSLRKDVEVNEGRKERSKDSMDSIDYEAIRRASISEISDAIKERGMNNMLAVRIKDFLE 1517
Query: 476 RLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIA 535
R V+DHG +DLEWLRDVPPDKAK+YLLS RGLGLKSVECVRLLTLH+LAFPVDTNVGRIA
Sbjct: 1518 RTVKDHGGIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHNLAFPVDTNVGRIA 1577
Query: 536 VRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFC 595
VRLGWVPLQPLPESLQLHLLELYPVLESIQK+LWPRLCKLDQ TLYELHYQ+ITFGKVFC
Sbjct: 1578 VRLGWVPLQPLPESLQLHLLELYPVLESIQKFLWPRLCKLDQPTLYELHYQLITFGKVFC 1637
Query: 596 TKSKPNCNACPMRGECRHFASAFASSRLALPGP--EEKAIVSANENRTNTQNPAMMINQL 653
TKS+PNCNACPMRGECRHFASA+AS+RLALP P +E+++ SA P + I +
Sbjct: 1638 TKSRPNCNACPMRGECRHFASAYASARLALPAPAPDERSLTSATIPVPPKSFPPVAIPMI 1697
Query: 654 PLPLTHATDLPVGKLEIAVNNCEPIIEEPATPEPERVQVSENDIEDTFC-EDPEEIPTIK 712
LPL L G NCEPIIEEPA+PE E +++E+DIED + EDP+EIPTIK
Sbjct: 1698 ELPLPLEKALARGAPS-NRENCEPIIEEPASPEQECTEITESDIEDAYYNEDPDEIPTIK 1756
Query: 713 LNMKEFTQTLQNYMQENLELQEGDMSKALVALTAGAASIPAPKLKNVSRLRTEHQVYELP 772
LN+++F TL+ +M+ N+ELQEGDMSKALVAL A SIP PKLKN+SRLRTEHQVY+LP
Sbjct: 1757 LNIEQFGMTLREHMERNMELQEGDMSKALVALNPTATSIPTPKLKNISRLRTEHQVYQLP 1816
Query: 773 DSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQEHGKMCDEKTCFSCNS 832
DSHPLL GM+KREPDDP YLLAIWTPGETANS QPPE +C + GKMC ++TC CN+
Sbjct: 1817 DSHPLLDGMDKREPDDPSPYLLAIWTPGETANSAQPPEQKCGGKASGKMCFDETCSECNN 1876
Query: 833 VRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWNLPR 892
VRE+ Q VRGT+LIPCRTAMRGSFPLNGTYFQVNE+FADH+SSL PI+VPR+W+W+LPR
Sbjct: 1877 VREANSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNELFADHESSLNPIDVPRDWIWDLPR 1936
Query: 893 RTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMARLHFPASKL 948
RTVYFGTS+ SIF+GL+TE IQ CFW+G+VCVRGF+QK+RAPRPLMARLHFPASKL
Sbjct: 1937 RTVYFGTSVTSIFRGLSTEQIQFCFWKGFVCVRGFEQKTRAPRPLMARLHFPASKL 1992
>gi|42569673|ref|NP_181190.3| protein ROS1 [Arabidopsis thaliana]
gi|71658826|sp|Q9SJQ6.2|ROS1_ARATH RecName: Full=Protein ROS1; AltName: Full=DEMETER-like protein 1;
AltName: Full=Repressor of silencing 1
gi|30909281|gb|AAP37178.1| ROS1 [Arabidopsis thaliana]
gi|330254169|gb|AEC09263.1| protein ROS1 [Arabidopsis thaliana]
Length = 1393
Score = 842 bits (2175), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/554 (71%), Positives = 452/554 (81%), Gaps = 12/554 (2%)
Query: 398 TSKSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTI 457
T K K +V KE++ FDWD LRR+ +A G +E+ T D++DW+A+R ADV ++A TI
Sbjct: 841 TLKEKGKKVLKEEKKAFDWDCLRREAQARAGIREKTRSTMDTVDWKAIRAADVKEVAETI 900
Query: 458 KERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRL 517
K RGMN+ LA RI+ FL+RLV DHGS+DLEWLRDVPPDKAKEYLLSF GLGLKSVECVRL
Sbjct: 901 KSRGMNHKLAERIQGFLDRLVNDHGSIDLEWLRDVPPDKAKEYLLSFNGLGLKSVECVRL 960
Query: 518 LTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQ 577
LTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLE+YP+LESIQKYLWPRLCKLDQ
Sbjct: 961 LTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEMYPMLESIQKYLWPRLCKLDQ 1020
Query: 578 RTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSAN 637
+TLYELHYQMITFGKVFCTKSKPNCNACPM+GECRHFASAFAS+RLALP E+
Sbjct: 1021 KTLYELHYQMITFGKVFCTKSKPNCNACPMKGECRHFASAFASARLALPSTEKGM----- 1075
Query: 638 ENRTNTQNPAMMINQLPLPLTHATDLPV---GKLEIAVNNCEPIIEEPATPEPERVQVSE 694
T +NP + LP P V + V CEPIIEEPA+PEPE +VS
Sbjct: 1076 --GTPDKNPLPL--HLPEPFQREQGSEVVQHSEPAKKVTCCEPIIEEPASPEPETAEVSI 1131
Query: 695 NDIEDTFCEDPEEIPTIKLNMKEFTQTLQNYMQENLELQEGDMSKALVALTAGAASIPAP 754
DIE+ F EDPEEIPTI+LNM FT L+ M+ N ELQ+G+MS ALVALTA AS+P P
Sbjct: 1132 ADIEEAFFEDPEEIPTIRLNMDAFTSNLKKIMEHNKELQDGNMSSALVALTAETASLPMP 1191
Query: 755 KLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCS 814
KLKN+S+LRTEH+VYELPD HPLL +EKREPDDP YLLAIWTPGETA+SIQP S C
Sbjct: 1192 KLKNISQLRTEHRVYELPDEHPLLAQLEKREPDDPCSYLLAIWTPGETADSIQPSVSTCI 1251
Query: 815 SQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHD 874
Q +G +CDE+TCFSCNS++E+ QIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADH
Sbjct: 1252 FQANGMLCDEETCFSCNSIKETRSQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHA 1311
Query: 875 SSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAP 934
SSL PINVPRE +W LPRRTVYFGTS+P+IFKGL+TE IQ CFW+GYVCVRGFD+K+R P
Sbjct: 1312 SSLNPINVPRELIWELPRRTVYFGTSVPTIFKGLSTEKIQACFWKGYVCVRGFDRKTRGP 1371
Query: 935 RPLMARLHFPASKL 948
+PL+ARLHFPASKL
Sbjct: 1372 KPLIARLHFPASKL 1385
Score = 39.7 bits (91), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Query: 20 SSAFMSLAANFPLNSKQKPCHGEEITSVIEEPAEYVLDPEDTIEWKEKMSHQPVCDQGSM 79
SSAFMSLA+ FP+ +S+ Y LD E+T MS P + S+
Sbjct: 615 SSAFMSLASQFPVPFVPSSNFDAGTSSMPSIQITY-LDSEET------MSSPPDHNHSSV 667
Query: 80 TLHGSESSEEREVVSSNNSLESSTSVVSSINESKCKLMNSSE 121
TL ++ EE++ V SN + SS+ + S +ES K +S E
Sbjct: 668 TLKNTQPDEEKDYVPSNETSRSSSEIAISAHESVDKTTDSKE 709
>gi|356533903|ref|XP_003535497.1| PREDICTED: transcriptional activator DEMETER-like [Glycine max]
Length = 1915
Score = 841 bits (2173), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/993 (49%), Positives = 615/993 (61%), Gaps = 98/993 (9%)
Query: 20 SSAFMSLAANFPLNSKQ-KPCHGEEITSVIEEPAEYVLDPEDTI-EWKEKMSHQPVCDQG 77
SSAFMSLA+ FPL SK K + + ++ +E +L+P DTI + +QP G
Sbjct: 958 SSAFMSLASRFPLQSKSSKKTYDVDTNTLFKEAGLNILNPADTITSYGYGTLNQPTYHLG 1017
Query: 78 SMTLHGSESSEEREVVSSNNSLESSTSVVSSINESKCKLMNSSEIYPETYNDVLSSPNSL 137
T H + +E+ + + S++ KL N S + + LS +SL
Sbjct: 1018 FETPHHA-----KELWRDCETSRTKGSLI--------KLNNQSSV-----EEFLSPQDSL 1059
Query: 138 DSSFAPFADGTISSSNSNSDAG-----DSSNVPTLNSFNGSNSFVELLQMVGSTMLHGNY 192
DSS A SS +++ G + L S N LQ+ +TM Y
Sbjct: 1060 DSSITQDARNRYSSGSNSESEGLDCRCEHRKTQFLTSTNS-------LQVGKTTMFQEFY 1112
Query: 193 NHRNGHMSSDENSKDEHSQFQTLESNTQRVKVKDIDDPKVLSRVSSIPPSSFHPCLTQDL 252
N NG +E +KD Q E Q + P V S S PS+F Q
Sbjct: 1113 NSVNGVSLFEERNKD--GQLHPAEQVKQNCSIGRNSSPNVCSAFSH--PSNFAYPPKQLP 1168
Query: 253 SVEVESYEMRREETRSSGISDV---------TDKIALMPEFAS----------------- 286
V Y + +T+ G+ + T+ +++ EF
Sbjct: 1169 VVPSTDYGLYYSDTQ--GLKTIQMNGEKFSWTETVSVHSEFQDNNSGNRKEGDSADKPTE 1226
Query: 287 -QTTDAT----------------KLIVAGPEAPRHGNKQSRNSMQANKNSIAQH----ES 325
Q T+ T K +V + + G+ + + N + + Q ES
Sbjct: 1227 IQYTNGTLGSPEIPTIDPYEPLSKYLVLPQDTSQFGSHTNYSQPSLNHHIVGQKSLESES 1286
Query: 326 ELFGDSRFAMEPPAHAQ----KNDLNLPKISSGSIDA--IESHNALYNRENTQLKSSVSD 379
F +S A Q + N+PK + G +D+ I + N+ EN++ +S+
Sbjct: 1287 REFTNSLNASRILGRYQDGVVNDSYNIPKDAEG-LDSKKISAANSQGCSENSRAESNPQK 1345
Query: 380 QNKYDHSFSKELNGIDDATSKSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDS 439
Q Y + +K+ SK++ + EK+ DWD LR++V+ NG +KER T DS
Sbjct: 1346 QVYYPNPINKK---SQIKVSKARKEKPETEKKLASDWDKLRKEVQVNGTEKERSMDTMDS 1402
Query: 440 LDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKE 499
LD+EAVRCA V +I+ TIKERGMNN+LA RIK+FL+RLV +HGS+DLEWLR VP DKAK+
Sbjct: 1403 LDYEAVRCASVKEISKTIKERGMNNLLAERIKEFLDRLVTEHGSIDLEWLRHVPQDKAKD 1462
Query: 500 YLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
+LLSFRGLGLKSVECVRLLTL ++AFPVDTNVGRIAVRLGWVPLQPLPE+LQLHLLELYP
Sbjct: 1463 FLLSFRGLGLKSVECVRLLTLQNIAFPVDTNVGRIAVRLGWVPLQPLPEALQLHLLELYP 1522
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFA 619
VLE++QKYLWPRLCKLDQRTLYELHYQMITFGKVFCTK KP CNACPMR ECRHFASAFA
Sbjct: 1523 VLEAVQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKKKPKCNACPMRAECRHFASAFA 1582
Query: 620 SSRLALPGPEEKAIVSANENRTNTQNPAMMINQLPLPLTHATDLPVGKLEIAVNNCEPII 679
S+RLALPGPEEK IVS + +N +N+ P+ L + ++ CEPII
Sbjct: 1583 SARLALPGPEEKHIVSMHVPIAAERN--YFVNENPMVLPLLENNLSRQVSPQSWQCEPII 1640
Query: 680 EEPATPEPERVQVSENDIEDTFCEDPEEIPTIKLNMKEFTQTLQNYMQENLELQEGDMSK 739
EEPATPE E + E+D+ED F ED +EI +I LN K+ T +QNY+QE E EG MSK
Sbjct: 1641 EEPATPEREWTEAEESDMEDFFKEDSDEILSIDLNAKKSTVNVQNYLQEYNEHNEGCMSK 1700
Query: 740 ALVALTAGAASIPAPKLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTP 799
ALVAL +ASIP PKLKNVSRLRTEHQVYELPDSHPLL M+KREPDDP YLLAIWTP
Sbjct: 1701 ALVALNPRSASIPTPKLKNVSRLRTEHQVYELPDSHPLLEKMDKREPDDPSPYLLAIWTP 1760
Query: 800 GETANSIQPPESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPL 859
GET NS++PPE RC SQ+ +C++ TCFSCNS+RE+ Q VRGT+LIPCRTA RGSFPL
Sbjct: 1761 GETPNSVEPPERRCGSQDSA-LCNDNTCFSCNSIREANSQTVRGTLLIPCRTATRGSFPL 1819
Query: 860 NGTYFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWR 919
NGTYFQVNE+FADH SS++PI++PREW+WNLPRRTVYFGTS+ SIFK L+T+ IQHCFWR
Sbjct: 1820 NGTYFQVNELFADHASSVQPIDIPREWIWNLPRRTVYFGTSVSSIFKDLSTQEIQHCFWR 1879
Query: 920 GYVCVRGFDQKSRAPRPLMARLHFPASKLNKVP 952
G+VCVRGFDQK RAPRPL ARLHF AS+ P
Sbjct: 1880 GFVCVRGFDQKERAPRPLQARLHFSASRFRLTP 1912
>gi|224113515|ref|XP_002316517.1| DNA glycosylase [Populus trichocarpa]
gi|222865557|gb|EEF02688.1| DNA glycosylase [Populus trichocarpa]
Length = 519
Score = 839 bits (2168), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/517 (77%), Positives = 448/517 (86%), Gaps = 7/517 (1%)
Query: 438 DSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKA 497
DSLD+EAVR A V +I++ IKERGMNNMLA RI++FLNRLVR+HGS+DLEWLRDVPPDKA
Sbjct: 2 DSLDYEAVRSARVKEISDAIKERGMNNMLAERIQEFLNRLVREHGSIDLEWLRDVPPDKA 61
Query: 498 KEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEL 557
K+YLLS RGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEL
Sbjct: 62 KDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEL 121
Query: 558 YPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASA 617
YP+LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKS+PNCNACPMR ECRHFASA
Sbjct: 122 YPILESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSRPNCNACPMRAECRHFASA 181
Query: 618 FASSRLALPGPEEKAIVSANENRTNTQNPAMMINQLPLPLTHATDLPVGKLEIAVNNCEP 677
FAS+RLALPGPEEK I ++ ++P + IN P+PL D P + + +C P
Sbjct: 182 FASARLALPGPEEKGITTSTVPFMPERSPGIGIN--PMPLPPPEDNPHKRHGSDIGSCVP 239
Query: 678 IIEEPATPEPERVQVSENDIEDTFCEDPEEIPTIKLNMKEFTQTLQNYMQENLELQEGDM 737
IIEEPATP+ E +++E DIED F EDP+EIPTIKLNM+EFT+ LQNYM NLELQEGDM
Sbjct: 240 IIEEPATPDQENTELTETDIED-FGEDPDEIPTIKLNMEEFTENLQNYMHTNLELQEGDM 298
Query: 738 SKALVALTAGAASIPAPKLKNVSRLRTEHQVYELPDSHPLLRG---MEKREPDDPGRYLL 794
SKALVAL ASIP PKLKNVSRLRTEHQVYELPDSHPLL G M++REPDDP YLL
Sbjct: 299 SKALVALNPN-ASIPTPKLKNVSRLRTEHQVYELPDSHPLLEGNLQMDRREPDDPSPYLL 357
Query: 795 AIWTPGETANSIQPPESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMR 854
AIWTPGETANSI+PP+ +C S+E K+CDEKTCFSCNS+RE+ Q VRGT+LIPCRTAMR
Sbjct: 358 AIWTPGETANSIEPPDQQCQSREPNKLCDEKTCFSCNSIREANSQTVRGTLLIPCRTAMR 417
Query: 855 GSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQ 914
GSFPLNGTYFQVNE+FADH+SSL PI+VPR +WNLPRR VYFGTS+ SIFKGL+TEGIQ
Sbjct: 418 GSFPLNGTYFQVNEMFADHESSLNPIDVPRSLIWNLPRRIVYFGTSVSSIFKGLSTEGIQ 477
Query: 915 HCFWRGYVCVRGFDQKSRAPRPLMARLHFPASKLNKV 951
CFWRG+VCVRGFDQK+RAPRPL ARLHFPAS+L K
Sbjct: 478 FCFWRGFVCVRGFDQKTRAPRPLKARLHFPASRLVKT 514
>gi|449527101|ref|XP_004170551.1| PREDICTED: LOW QUALITY PROTEIN: protein ROS1-like, partial [Cucumis
sativus]
Length = 987
Score = 835 bits (2158), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/555 (72%), Positives = 459/555 (82%), Gaps = 18/555 (3%)
Query: 380 QNKYDHSFSKELNGIDDATSKSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDS 439
QNK+DHS S + N K RV KEK+ DWDSLR+QVEA G +++R +T DS
Sbjct: 436 QNKHDHSLSSKFNDPKSDIIKPNRERVKKEKRVGVDWDSLRKQVEATG-RRDRTTNTMDS 494
Query: 440 LDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKE 499
LDWEAVRCAD++ IA TI+ERGMNN LA RIKDFL+RLV+DHGS DLEWLRDVPPD+AKE
Sbjct: 495 LDWEAVRCADIDDIAYTIRERGMNNRLAERIKDFLDRLVKDHGSTDLEWLRDVPPDQAKE 554
Query: 500 YLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
YLLS RGLGLKSVECVRLLTL +AFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP
Sbjct: 555 YLLSIRGLGLKSVECVRLLTLQQVAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 614
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFA 619
VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFA
Sbjct: 615 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFA 674
Query: 620 SSRLALPGPEEKAIVSANENRTNTQNPAMMINQLPLPLTHATDLPVGKLE--IAV----N 673
S+RL+LP PEEK++++A E + + N A++++Q PL LT ++ P+ ++ I+V +
Sbjct: 675 SARLSLPAPEEKSLINATERKADI-NQAVVVHQQPLALTQESE-PIESIQQLISVKSGGS 732
Query: 674 NCEPIIEEPATPEPERVQVSENDIEDTFCEDPEEIPTIKLNMKEFTQTLQNYMQENLELQ 733
N +PIIEEP TPEPE Q+SE DIEDT EDP+EIPTIKLN++ FT+ +QNYMQEN+ELQ
Sbjct: 733 NKDPIIEEPQTPEPECPQISEIDIEDTLYEDPDEIPTIKLNIEAFTKHVQNYMQENMELQ 792
Query: 734 EGDMSKALVALTAGAASIPAPKLKNVSRLRTEHQVYELPDSHPLLRG--MEKREPDDPGR 791
EG MSKALV L+ AASIP PKLKN+SRLRTEHQVYELPDSHPLL +E+REPDDP
Sbjct: 793 EGSMSKALVLLSPEAASIPMPKLKNISRLRTEHQVYELPDSHPLLEKLQLERREPDDPCF 852
Query: 792 YLLAIWTPGETANSIQPPESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTI------ 845
YLLAIWTPGETANS++ + CSSQE G +C EK CFSCNSVRE + ++VRGT
Sbjct: 853 YLLAIWTPGETANSVEQLHAHCSSQESGGLCGEKECFSCNSVREPDSEVVRGTTSANQLQ 912
Query: 846 -LIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSI 904
IPCRTAMRGSFPLNGTYFQVNEVFADHDSSL PI+VPR WLW L RRTVYFGTSIP+I
Sbjct: 913 XXIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPRSWLWKLSRRTVYFGTSIPTI 972
Query: 905 FKGLTTEGIQHCFWR 919
FKGL+TE IQ CFW+
Sbjct: 973 FKGLSTEEIQGCFWK 987
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 98/216 (45%), Gaps = 30/216 (13%)
Query: 20 SSAFMSLAANFPLNSK--QKPCHGEEITSVIEEPAEYVLDPEDTIEWKEKMSHQPVCDQG 77
SSAFMSLAA +PL SK + E+ + ++ E + ED++ W +++S Q +C Q
Sbjct: 57 SSAFMSLAARYPLKSKSLHESSVDEQTSLILNESQVTLCQAEDSVIWAKQISDQSICKQS 116
Query: 78 SMTLHGSESSEEREVVSSNNSLESSTSVVSSINESKCKLMN-SSEIYPETYNDVLSSPNS 136
T+ + +EE + SS++S S T+ V+S+ +C + + SS+ E + L++ +
Sbjct: 117 CTTVCEIDQAEENFLTSSDSS-GSKTAGVTSMRGYQCSVTSYSSKKIVELEDRRLTTEIN 175
Query: 137 LDSSFAPF-----ADGTISSS---------NSNSDAGDSSNVPTLNS------------F 170
AD ISS NS + +P L S
Sbjct: 176 TTVEACSLGNEKTADAAISSQMSVVSEHSINSLCPLSSENRMPCLKSNYGKDLSSKDICG 235
Query: 171 NGSNSFVELLQMVGSTMLHGNYNHRNGHMSSDENSK 206
NG S VE+ Q+ + L ++ + SSDE S+
Sbjct: 236 NGCASSVEVKQITETNKLKSDFKIASATDSSDEKSE 271
>gi|357155497|ref|XP_003577140.1| PREDICTED: uncharacterized protein LOC100841571 [Brachypodium
distachyon]
Length = 1974
Score = 833 bits (2151), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/567 (70%), Positives = 460/567 (81%), Gaps = 8/567 (1%)
Query: 396 DATSKSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIAN 455
D +SK+K RV K+ +DWD LR++V N G +ER + KD+LDWE +R DV +I++
Sbjct: 1407 DGSSKAKKARVGTGKKRAYDWDILRKEVLVNHGNEERANNAKDALDWETIRQIDVKEISD 1466
Query: 456 TIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECV 515
TI+ERGMNNMLA RIK FLNRLV DHGS+DLEWLR V PDKAKEYLLS RGLGLKSVECV
Sbjct: 1467 TIRERGMNNMLAERIKAFLNRLVTDHGSIDLEWLRYVDPDKAKEYLLSIRGLGLKSVECV 1526
Query: 516 RLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKL 575
RLLTLHH+AFPVDTNVGRI VRLGWVPLQPLPESLQLHLLELYP+LE+IQKYLWPRLCKL
Sbjct: 1527 RLLTLHHMAFPVDTNVGRICVRLGWVPLQPLPESLQLHLLELYPMLENIQKYLWPRLCKL 1586
Query: 576 DQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVS 635
DQRTLYELHYQMITFGKVFCTKSKPNCNACPMR EC+HFASAFAS+RLALPGPEEK++V+
Sbjct: 1587 DQRTLYELHYQMITFGKVFCTKSKPNCNACPMRAECKHFASAFASARLALPGPEEKSLVT 1646
Query: 636 ANENRTNTQNPAMMINQLPLPLTHATDLPVGKLEIAVNNCEPIIEEPATPEPER--VQVS 693
+ I+ PL + D + + N +PIIEEPA+PEPE ++
Sbjct: 1647 SGNPIVAESCQQPYISSRPL---NQLDWNAHPHDHVLGNRQPIIEEPASPEPEPETAELK 1703
Query: 694 ENDIEDTFCEDPEEIPTIKLNMKEFTQTLQNYMQ-ENLELQEGDMSKALVALTAGAASIP 752
E IED F +DPEEIPTIKLN +EF Q L+NYMQ N+++++ DMS ALVA+T AASIP
Sbjct: 1704 EGAIEDMFFDDPEEIPTIKLNFEEFAQNLKNYMQVNNIDIEDADMSSALVAITPEAASIP 1763
Query: 753 APKLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESR 812
P+LKNVSRLRTEHQVYELPDSHPLL G ++REPDDP YLL+IWTPGETA S P +
Sbjct: 1764 TPRLKNVSRLRTEHQVYELPDSHPLLEGFDQREPDDPCPYLLSIWTPGETAQSADAPMTS 1823
Query: 813 CSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFAD 872
C+S E GK+CD CFSCNS+RE + Q VRGT+LIPCRTAMRGSFPLNGTYFQVNEVFAD
Sbjct: 1824 CNSHESGKLCDSSACFSCNSIREVQAQKVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFAD 1883
Query: 873 HDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSR 932
HDSS PI+VPR W+WNLPRRTVYFGTS+P+IFKGLTTE IQHCFWRG+VCVRGFD+ SR
Sbjct: 1884 HDSSRNPIDVPRSWIWNLPRRTVYFGTSVPTIFKGLTTEDIQHCFWRGFVCVRGFDRISR 1943
Query: 933 APRPLMARLHFPASKL--NKVPGKADA 957
APRPL ARLHFPASK+ NK P + A
Sbjct: 1944 APRPLYARLHFPASKITRNKKPTASAA 1970
>gi|333471379|gb|AEF38423.1| 5-methylcytosine DNA glycosylase [Triticum aestivum]
Length = 1975
Score = 829 bits (2141), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/545 (72%), Positives = 457/545 (83%), Gaps = 16/545 (2%)
Query: 414 FDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDF 473
+DWD LR++V A+ G +ER E+ KD+LDWE +R DV +I+N I+ERGMNNML+ RI+DF
Sbjct: 1426 YDWDILRKEVLASRGNEERGENAKDALDWETIRQIDVKEISNAIRERGMNNMLSERIQDF 1485
Query: 474 LNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGR 533
LNR+VRDHGS+DLEWLR V PDKAKEYLLS RGLGLKSVECVRLLTLHH+AFPVDTNVGR
Sbjct: 1486 LNRVVRDHGSIDLEWLRYVDPDKAKEYLLSIRGLGLKSVECVRLLTLHHMAFPVDTNVGR 1545
Query: 534 IAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKV 593
I VRLGWVPLQPLPESLQLHLLELYP+LE+IQKYLWPRLCKLDQRTLYELHYQMITFGKV
Sbjct: 1546 ICVRLGWVPLQPLPESLQLHLLELYPMLENIQKYLWPRLCKLDQRTLYELHYQMITFGKV 1605
Query: 594 FCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANE--NRTNTQNP---AM 648
FCTKSKPNCNACPMR EC+HFASAFAS+RLALPGPEEK++V++ + Q P +M
Sbjct: 1606 FCTKSKPNCNACPMRAECKHFASAFASARLALPGPEEKSLVTSGNPIASGSCQQPYISSM 1665
Query: 649 MINQLPLPLTHATDLPVGKLEIAVNNCEPIIEEPATPEPER--VQVSENDIEDTFCEDPE 706
+NQL D + ++N +PIIEEPA+PEPE ++ E+ IED F +DPE
Sbjct: 1666 RLNQL--------DWNANAHDHILDNRQPIIEEPASPEPEPETAEMRESAIEDIFLDDPE 1717
Query: 707 EIPTIKLNMKEFTQTLQNYMQ-ENLELQEGDMSKALVALTAGAASIPAPKLKNVSRLRTE 765
EIPTIKLN +EF Q L+NYMQ N+E+++ DMS ALVA+T AASIP P+LKNVSRLRTE
Sbjct: 1718 EIPTIKLNFEEFAQNLKNYMQVNNIEMEDADMSSALVAITPEAASIPTPRLKNVSRLRTE 1777
Query: 766 HQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQEHGKMCDEK 825
HQVYELPDSHPLL G ++REPDDP YLL+IWTPGETA SI P++ C+S E GK+CD
Sbjct: 1778 HQVYELPDSHPLLEGYDQREPDDPCPYLLSIWTPGETAQSIDAPKTACNSNESGKLCDSS 1837
Query: 826 TCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPRE 885
CFSCNS+RE++ Q VRGTIL+PCRTAMRGSFPLNGTYFQVNEVFADHDSS P++VPR
Sbjct: 1838 ACFSCNSMREAQAQTVRGTILVPCRTAMRGSFPLNGTYFQVNEVFADHDSSRNPVDVPRR 1897
Query: 886 WLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMARLHFPA 945
W+W+LPRRTVYFGTS+PSIFKGLTTE IQ CFWRG+VCVRGFD+ SRAPRPL ARLHFPA
Sbjct: 1898 WIWDLPRRTVYFGTSVPSIFKGLTTEDIQQCFWRGFVCVRGFDRTSRAPRPLYARLHFPA 1957
Query: 946 SKLNK 950
SK+ +
Sbjct: 1958 SKITR 1962
>gi|255575365|ref|XP_002528585.1| Protein ROS1, putative [Ricinus communis]
gi|223531981|gb|EEF33793.1| Protein ROS1, putative [Ricinus communis]
Length = 1634
Score = 828 bits (2139), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/621 (66%), Positives = 464/621 (74%), Gaps = 86/621 (13%)
Query: 355 SIDAIESHNALYNRENTQLKSSVSDQNKYDHSFSKELNGIDDATSKSKSTRVSKEKQNDF 414
++D +ES +AL E K++ SD ++ S KEL+ ++ AT K+KS RV KE + D
Sbjct: 1043 TLDTMESSSALDKPEIFLQKTTESDMIEHGFSEIKELDEMNAATRKAKSRRVGKEIREDV 1102
Query: 415 DWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFL 474
DWD+LR+QVEANG K+ER +T DSLDWEAVRCA+VN IANTIKERGMNN+LA RIK+FL
Sbjct: 1103 DWDALRKQVEANGRKRERTPNTMDSLDWEAVRCAEVNDIANTIKERGMNNVLAERIKNFL 1162
Query: 475 NRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRI 534
NRLVR+HGS+DLEWLRDVPPDKAKEYLLS RGLGLKSVECVRLLTLHHLAFPVDTNVGRI
Sbjct: 1163 NRLVREHGSIDLEWLRDVPPDKAKEYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRI 1222
Query: 535 AVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVF 594
AVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVF
Sbjct: 1223 AVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVF 1282
Query: 595 CTKSKPNCNACPMRGECRHFASAFA----------------------------------- 619
CTKSKPNCNACPMRGECRHFASAFA
Sbjct: 1283 CTKSKPNCNACPMRGECRHFASAFARSKNLNVIKETSYNWSFRLSTMNSMCKQSTGLFPV 1342
Query: 620 --------SSRLALPGPEEKAIVSANENRTNTQNPAMMINQLPLPLTHATD--------- 662
S+RLALPGPEEK +VSA ENRTN NPA M+ QLPLPL AT+
Sbjct: 1343 SKDHHVKCSARLALPGPEEKGMVSATENRTNEPNPAAMVGQLPLPLPQATEQSEENQLSK 1402
Query: 663 -LPVGKLEIAVNNCEPIIEEPATPEPERVQVSENDIEDTFCEDPEEIPTIKLNMKEFTQT 721
+ + + VN+CEPI+EEP++PEPER+QV+END+EDTFCEDP+EIPTIKLN++EFTQ
Sbjct: 1403 SIQQSEAQYGVNSCEPIVEEPSSPEPERIQVTENDMEDTFCEDPDEIPTIKLNIEEFTQN 1462
Query: 722 LQNYMQENLELQEGDMSKALVALTAGAASIPAPKLKNVSRLRTEHQVYELP--DSHPLLR 779
LQNYMQ N+ELQE DMSKAL S ++ H +Y L SH
Sbjct: 1463 LQNYMQNNMELQECDMSKALTG----------------SSIQYGHPLYTLTLFQSHI--- 1503
Query: 780 GMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQEHGKMCDEKTCFSCNSVRESEFQ 839
P + A ETANSIQPPE+ C+ QE GK+CDEKTCFSCNS+RE+ Q
Sbjct: 1504 --------SPSYWTCAC----ETANSIQPPENNCNLQEDGKLCDEKTCFSCNSIREANSQ 1551
Query: 840 IVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGT 899
IVRGT+LIPCRTAMRGSFPLNGTYFQVNEVFADHDSSL PI+VPR W+WNLPRRTVYFGT
Sbjct: 1552 IVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPRSWIWNLPRRTVYFGT 1611
Query: 900 SIPSIFKGLTTEGIQHCFWRG 920
SIP+IFKGLTTEGIQHCFWRG
Sbjct: 1612 SIPTIFKGLTTEGIQHCFWRG 1632
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 84/138 (60%), Gaps = 17/138 (12%)
Query: 20 SSAFMSLAANFPLNSK--QKPCHGEEITSVIEEPAEYVLDPEDTIEWKEKMSHQPVCDQG 77
SSAFMSLAA+FPL S+ + C+ E SVI++P + D EDT++W E+MS+Q +CDQ
Sbjct: 867 SSAFMSLAAHFPLKSQSHNEQCYEERTGSVIDKPIVCMPDLEDTLKWNEEMSNQSICDQT 926
Query: 78 SMTLHGSESSEEREVVSSNNSLESSTSVVSSINESKC-------------KLMNSSEIYP 124
SMTLH SE EERE V SN S SST +V+S C K++++ ++
Sbjct: 927 SMTLHDSELDEEREAVYSNESSTSSTGIVNSSGLETCYESKENRSTTEIIKIIDTCDVRE 986
Query: 125 ET--YNDVLSSPNSLDSS 140
+T ND LS +S+ SS
Sbjct: 987 KTRVTNDALSLQHSVFSS 1004
>gi|333471383|gb|AEF38425.1| 5-methylcytosine DNA glycosylase [Triticum aestivum]
Length = 1981
Score = 827 bits (2137), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/545 (72%), Positives = 457/545 (83%), Gaps = 16/545 (2%)
Query: 414 FDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDF 473
+DWD LR++V A+ G +ER E+ KD+LDWE +R DV +I+N I+ERGMNNML+ RI+DF
Sbjct: 1432 YDWDILRKEVLASRGNEERGENAKDALDWETIRQIDVKEISNAIRERGMNNMLSERIQDF 1491
Query: 474 LNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGR 533
LNR+VRDHGS+DLEWLR V PDKAKEYLLS RGLGLKSVECVRLLTLHH+AFPVDTNVGR
Sbjct: 1492 LNRVVRDHGSIDLEWLRYVDPDKAKEYLLSIRGLGLKSVECVRLLTLHHMAFPVDTNVGR 1551
Query: 534 IAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKV 593
I VRLGWVPLQPLPESLQLHLLELYP+LE+IQKYLWPRLCKLDQRTLYELHYQMITFGKV
Sbjct: 1552 ICVRLGWVPLQPLPESLQLHLLELYPMLENIQKYLWPRLCKLDQRTLYELHYQMITFGKV 1611
Query: 594 FCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANE--NRTNTQNP---AM 648
FCTKSKPNCNACPMR EC+HFASAFAS+RLALPGPEEK++V++ + Q P +M
Sbjct: 1612 FCTKSKPNCNACPMRAECKHFASAFASARLALPGPEEKSLVTSGNPIASGSCQQPYISSM 1671
Query: 649 MINQLPLPLTHATDLPVGKLEIAVNNCEPIIEEPATPEPER--VQVSENDIEDTFCEDPE 706
+NQL D + ++N +PIIEEPA+PEPE ++ E+ IED F +DPE
Sbjct: 1672 RLNQL--------DWNANAHDHILDNRQPIIEEPASPEPEPETAEMRESAIEDIFLDDPE 1723
Query: 707 EIPTIKLNMKEFTQTLQNYMQ-ENLELQEGDMSKALVALTAGAASIPAPKLKNVSRLRTE 765
EIPTIKLN +EF Q L+NYMQ N+E+++ DMS ALVA+T AASIP P+LKNVSRLRTE
Sbjct: 1724 EIPTIKLNFEEFAQNLKNYMQVNNIEMEDADMSSALVAITPEAASIPTPRLKNVSRLRTE 1783
Query: 766 HQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQEHGKMCDEK 825
HQVYELPDSHPLL G ++REPDDP YLL+IWTPGETA SI P++ C+S E GK+CD
Sbjct: 1784 HQVYELPDSHPLLEGYDQREPDDPCPYLLSIWTPGETAQSIDAPKTACNSNESGKLCDSS 1843
Query: 826 TCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPRE 885
CFSCNS+RE++ Q VRGTIL+PCRTAMRGSFPLNGTYFQVNEVFADHDSS P++VPR
Sbjct: 1844 ACFSCNSMREAQAQTVRGTILVPCRTAMRGSFPLNGTYFQVNEVFADHDSSRNPVDVPRR 1903
Query: 886 WLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMARLHFPA 945
W+W+LPRRTVYFGTS+PSIFKGLTTE IQ CFWRG+VCVRGFD+ SRAPRPL ARLHFPA
Sbjct: 1904 WIWDLPRRTVYFGTSVPSIFKGLTTEDIQQCFWRGFVCVRGFDRTSRAPRPLYARLHFPA 1963
Query: 946 SKLNK 950
SK+ +
Sbjct: 1964 SKITR 1968
>gi|333471381|gb|AEF38424.1| 5-methylcytosine DNA glycosylase [Triticum aestivum]
Length = 1982
Score = 826 bits (2133), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/545 (72%), Positives = 457/545 (83%), Gaps = 16/545 (2%)
Query: 414 FDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDF 473
+DWD LR++V A+ G + R E+ KD+LDWE +R DV +I+NTI+ERGMNNML+ RI+DF
Sbjct: 1433 YDWDILRKEVLASRGNEGRGENAKDALDWETIRQIDVKEISNTIRERGMNNMLSERIQDF 1492
Query: 474 LNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGR 533
LNR+VRDHGS+DLEWLR V PDKAKEYLLS RGLGLKSVECVRLLTLHH+AFPVDTNVGR
Sbjct: 1493 LNRVVRDHGSIDLEWLRYVDPDKAKEYLLSIRGLGLKSVECVRLLTLHHMAFPVDTNVGR 1552
Query: 534 IAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKV 593
I VRLGWVPLQPLPESLQLHLLELYP+LE+IQKYLWPRLCKLDQRTLYELHYQMITFGKV
Sbjct: 1553 ICVRLGWVPLQPLPESLQLHLLELYPMLENIQKYLWPRLCKLDQRTLYELHYQMITFGKV 1612
Query: 594 FCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANE--NRTNTQNP---AM 648
FCTKSKPNCNACPMR EC+HFASAFAS+RLALPGPEEK++V++ + Q P +M
Sbjct: 1613 FCTKSKPNCNACPMRAECKHFASAFASARLALPGPEEKSLVTSGNPIASGSCQQPYISSM 1672
Query: 649 MINQLPLPLTHATDLPVGKLEIAVNNCEPIIEEPATPEPER--VQVSENDIEDTFCEDPE 706
+NQL D + ++N +PIIEEPA+PEPE ++ E+ IED F +DPE
Sbjct: 1673 RLNQL--------DWNANAHDHILDNRQPIIEEPASPEPEPETAEMRESAIEDIFLDDPE 1724
Query: 707 EIPTIKLNMKEFTQTLQNYMQ-ENLELQEGDMSKALVALTAGAASIPAPKLKNVSRLRTE 765
EIPTIKLN +EF Q L+NYMQ N+E+++ DMS ALVA+T AASIP P+LKNVSRLRTE
Sbjct: 1725 EIPTIKLNFEEFAQNLKNYMQVNNIEMEDADMSSALVAITPEAASIPTPRLKNVSRLRTE 1784
Query: 766 HQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQEHGKMCDEK 825
HQVYELPDSHPLL G ++REPDDP YLL+IWTPGETA SI P++ C+S E GK+CD
Sbjct: 1785 HQVYELPDSHPLLEGYDQREPDDPCPYLLSIWTPGETAQSIDAPKTACNSNESGKLCDSS 1844
Query: 826 TCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPRE 885
CFSCNS+RE++ Q VRGTIL+PCRTAMRGSFPLNGTYFQVNEVFADHDSS P++VPR
Sbjct: 1845 ACFSCNSMREAQAQTVRGTILVPCRTAMRGSFPLNGTYFQVNEVFADHDSSRNPVDVPRR 1904
Query: 886 WLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMARLHFPA 945
W+W+LPRRTVYFGTS+PSIFKGLTTE IQ CFWRG+VCVRGFD+ SRAPRPL ARLHFPA
Sbjct: 1905 WIWDLPRRTVYFGTSVPSIFKGLTTEDIQQCFWRGFVCVRGFDRTSRAPRPLYARLHFPA 1964
Query: 946 SKLNK 950
SK+ +
Sbjct: 1965 SKVTR 1969
>gi|413925773|gb|AFW65705.1| hypothetical protein ZEAMMB73_319662 [Zea mays]
Length = 1904
Score = 826 bits (2133), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/571 (68%), Positives = 458/571 (80%), Gaps = 23/571 (4%)
Query: 401 SKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKER 460
SK+ + K+ DWDSLR++V +NGG K+R +D++DWEAVR A+V +I+ TI+ER
Sbjct: 1343 SKAKVRGRPKKKTDDWDSLRKKVLSNGGDKQRSHDARDTVDWEAVRQAEVREISETIRER 1402
Query: 461 GMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTL 520
GMNNMLA RIK+FLNRLV DHGS+DLEWLRDV PDKAK++LLS RGLGLKSVECVRLLTL
Sbjct: 1403 GMNNMLAERIKEFLNRLVTDHGSIDLEWLRDVQPDKAKDFLLSIRGLGLKSVECVRLLTL 1462
Query: 521 HHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTL 580
HH+AFPVDTNVGRI VRLGWVPLQPLPESLQLHLLE+YP+LE IQKYLWPRLCKLDQRTL
Sbjct: 1463 HHMAFPVDTNVGRICVRLGWVPLQPLPESLQLHLLEMYPMLEHIQKYLWPRLCKLDQRTL 1522
Query: 581 YELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANENR 640
YELHYQMITFGKVFCTKSKPNCN+CPMR EC+HFASAFAS+RLALP PEEK +V+ +
Sbjct: 1523 YELHYQMITFGKVFCTKSKPNCNSCPMRAECKHFASAFASARLALPAPEEKCLVTLED-- 1580
Query: 641 TNTQNPAMMINQLPLPLTHATDLPVGKLEIAVN--------NCEPIIEEPATP--EPERV 690
N +Q T+ VG+LE + N N +PIIEEP +P E E +
Sbjct: 1581 ---PNVVEFSHQ-----TYINSGSVGQLEWSANYPKHAVSGNHQPIIEEPLSPECETENI 1632
Query: 691 QVSENDIEDTFCEDPEEIPTIKLNMKEFTQTLQNYMQ-ENLELQEGDMSKALVALTAGAA 749
+ E IED FCE+ +EIPTI LN++EFTQ L++YMQ N+E++ DMSKALVA+T AA
Sbjct: 1633 EAHEGAIEDFFCEESDEIPTINLNIEEFTQNLKDYMQANNVEIEYADMSKALVAITPDAA 1692
Query: 750 SIPAPKLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPP 809
SIP PKLKNV+RLRTEHQVYELPDSHPLL G E+REPDDP YLL+IWTPGETA SI P
Sbjct: 1693 SIPTPKLKNVNRLRTEHQVYELPDSHPLLEGFEQREPDDPCPYLLSIWTPGETAQSIDAP 1752
Query: 810 ESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEV 869
++ C S E G++C TCFSCN++RE + Q VRGT+LIPCRTAMRGSFPLNGTYFQVNEV
Sbjct: 1753 KTFCDSGETGRLCGSSTCFSCNNIREMQAQKVRGTLLIPCRTAMRGSFPLNGTYFQVNEV 1812
Query: 870 FADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQ 929
FADH SS PI+VPR W+W+LPRRTVYFGTS+P+IF+GLTTE IQ CFWRG+VCVRGFD+
Sbjct: 1813 FADHCSSQNPIDVPRSWIWDLPRRTVYFGTSVPTIFRGLTTEEIQRCFWRGFVCVRGFDR 1872
Query: 930 KSRAPRPLMARLHFPASKL--NKVPGKADAD 958
RAPRPL ARLHFP SK+ K PG A A+
Sbjct: 1873 TVRAPRPLYARLHFPVSKVVRGKKPGAARAE 1903
>gi|222617989|gb|EEE54121.1| hypothetical protein OsJ_00892 [Oryza sativa Japonica Group]
Length = 1964
Score = 821 bits (2120), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/589 (67%), Positives = 464/589 (78%), Gaps = 42/589 (7%)
Query: 399 SKSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIK 458
SK+K RV K+ +DWD LR++V + G KER ++ KDS+DWE +R A+V +I++TI+
Sbjct: 1386 SKAKRPRVGAGKKKTYDWDMLRKEVLYSHGNKERSQNAKDSIDWETIRQAEVKEISDTIR 1445
Query: 459 ERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVEC---- 514
ERGMNNMLA RIKDFLNRLVRDHGS+DLEWLR V DKAK+YLLS RGLGLKSVEC
Sbjct: 1446 ERGMNNMLAERIKDFLNRLVRDHGSIDLEWLRYVDSDKAKDYLLSIRGLGLKSVECNMCE 1505
Query: 515 ---------VRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQ 565
R+ ++ + VDTNVGRI VRLGWVPLQPLPESLQLHLLE+YP+LE+IQ
Sbjct: 1506 AWMGATSAPTRVSSVAPVG-DVDTNVGRICVRLGWVPLQPLPESLQLHLLEMYPMLENIQ 1564
Query: 566 KYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLAL 625
KYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMR EC+HFASAFAS+RLAL
Sbjct: 1565 KYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRAECKHFASAFASARLAL 1624
Query: 626 PGPEEKAIVSANENRTNTQNPAMMINQLPLPLTHATDLPV-GKLEIAVNNC-------EP 677
PGPEEK++V+ + T A +Q T+ + PV +LE N C +P
Sbjct: 1625 PGPEEKSLVT-----SGTPIAAETFHQ-----TYISSRPVVSQLEWNSNTCHHGMNNRQP 1674
Query: 678 IIEEPATPEPERV--QVSENDIEDTFCEDPEEIPTIKLNMKEFTQTLQNYMQ-ENLELQE 734
IIEEPA+PEPE ++ E IED+F +DPEEIPTIKLN +EFTQ L++YMQ N+E+++
Sbjct: 1675 IIEEPASPEPEHETEEMKECAIEDSFVDDPEEIPTIKLNFEEFTQNLKSYMQANNIEIED 1734
Query: 735 GDMSKALVALTAGAASIPAPKLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLL 794
DMSKALVA+T ASIP PKLKNVSRLRTEHQVYELPDSHPLL G +REPDDP YLL
Sbjct: 1735 ADMSKALVAITPEVASIPTPKLKNVSRLRTEHQVYELPDSHPLLEGFNQREPDDPCPYLL 1794
Query: 795 AIWTPGETANSIQPPESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMR 854
+IWTPGETA S P+S C+SQE+G++C TCFSCNS+RE++ Q VRGT+LIPCRTAMR
Sbjct: 1795 SIWTPGETAQSTDAPKSVCNSQENGELCASNTCFSCNSIREAQAQKVRGTLLIPCRTAMR 1854
Query: 855 GSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQ 914
GSFPLNGTYFQVNEVFADHDSS PI+VPR W+WNLPRRTVYFGTSIP+IFKGLTTE IQ
Sbjct: 1855 GSFPLNGTYFQVNEVFADHDSSRNPIDVPRSWIWNLPRRTVYFGTSIPTIFKGLTTEEIQ 1914
Query: 915 HCFWRGYVCVRGFDQKSRAPRPLMARLHFPASKLNK-------VPGKAD 956
HCFWRG+VCVRGFD+ SRAPRPL ARLHFPASK+ + PG+ D
Sbjct: 1915 HCFWRGFVCVRGFDRTSRAPRPLYARLHFPASKITRNKKSAGSAPGRDD 1963
>gi|357142343|ref|XP_003572540.1| PREDICTED: uncharacterized protein LOC100823274 [Brachypodium
distachyon]
Length = 1946
Score = 796 bits (2057), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/568 (67%), Positives = 456/568 (80%), Gaps = 28/568 (4%)
Query: 398 TSKSKSTRV-SKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANT 456
T KSK +V + K+ +DW++LR++V NGG K+R +TKDS+DWEAVR ADV I+ T
Sbjct: 1385 TDKSKGKKVRGQTKKKAYDWENLRKEVSCNGGNKQRSHNTKDSVDWEAVRQADVRDISET 1444
Query: 457 IKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVR 516
I+ERGMNN+LA RIK+FLNRLV DHGS+DLEWLRD+ PDKAK+YLLS RGLGLKS ECVR
Sbjct: 1445 IRERGMNNVLAERIKEFLNRLVSDHGSIDLEWLRDLQPDKAKDYLLSIRGLGLKSAECVR 1504
Query: 517 LLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLD 576
LLTLHH+AFPVDTNV RI VRLGWVPLQPLPESLQLHLLELYP+LE IQKYLWPRLC+LD
Sbjct: 1505 LLTLHHMAFPVDTNVARICVRLGWVPLQPLPESLQLHLLELYPMLEHIQKYLWPRLCELD 1564
Query: 577 QRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSA 636
Q TLYELHYQMITFGKVFCTKSKPNCN+CPMR EC+HFASAFAS+RL+LPGPEEK++V+
Sbjct: 1565 QLTLYELHYQMITFGKVFCTKSKPNCNSCPMRAECKHFASAFASARLSLPGPEEKSLVA- 1623
Query: 637 NENRTNTQNPAMMINQLPLPLTHATDLPVGKLEIAVNNC--------EPIIEEPATPE-- 686
+ N A +Q T+ PVG+LE N+C +PI+EEP++PE
Sbjct: 1624 ----SEATNAAESCHQ-----TYIDPRPVGQLEWNTNDCRHPGSGNHQPIVEEPSSPEPE 1674
Query: 687 ---PERVQVSENDIEDTFCEDPEEIPTIKLNMKEFTQTLQNYMQ-ENLELQEGDMSKALV 742
E QVS IED F E+P+EIPTI LN+KEF Q L++YMQ N+E+++ DMS+ALV
Sbjct: 1675 PEIAETKQVS---IEDFFTEEPDEIPTISLNIKEFKQNLKSYMQANNIEIEDADMSRALV 1731
Query: 743 ALTAGAASIPAPKLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGET 802
A+T AASIP P+LKNVSRLRTEHQVYELPDSHPLL G ++R+ DDP YLL+IWTPGET
Sbjct: 1732 AITPEAASIPTPRLKNVSRLRTEHQVYELPDSHPLLEGFDRRQTDDPCPYLLSIWTPGET 1791
Query: 803 ANSIQPPESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGT 862
A S P++ C+S+E GK+C TCFSC+S RE + + VR TILIPCRTAMRGSFPLNGT
Sbjct: 1792 AQSTDAPKTFCNSEETGKLCGSSTCFSCSSAREVQARKVRATILIPCRTAMRGSFPLNGT 1851
Query: 863 YFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYV 922
YFQVNE+FADH SS PI+V R +WNLPRRTVYFGTSIP+IF+GLTTE IQ CFWRG+V
Sbjct: 1852 YFQVNELFADHYSSQNPIDVERSLIWNLPRRTVYFGTSIPTIFRGLTTEEIQQCFWRGFV 1911
Query: 923 CVRGFDQKSRAPRPLMARLHFPASKLNK 950
CVRGFD+K RAPRPL RLHFPASK+ +
Sbjct: 1912 CVRGFDRKLRAPRPLFPRLHFPASKVTR 1939
>gi|218196882|gb|EEC79309.1| hypothetical protein OsI_20143 [Oryza sativa Indica Group]
Length = 1873
Score = 780 bits (2014), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/606 (63%), Positives = 458/606 (75%), Gaps = 14/606 (2%)
Query: 359 IESHNALYNRENTQLKSSVSDQNKYDHSFSKELNGIDDATSKS----KSTRVSKEKQNDF 414
+ H +LY +++ + S NG+ D +++ KS SK+ +F
Sbjct: 1267 FQDHESLYATGGVIPETATKADDSTLKSGFASFNGLPDTATQASKPKKSRTTSKKNSENF 1326
Query: 415 DWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFL 474
DWD LRRQ N KER +DS+DWEAVRCADV +I++ I+ERGMNN+LA RI+ FL
Sbjct: 1327 DWDKLRRQACGNYQMKERIFDRRDSVDWEAVRCADVQRISHAIRERGMNNVLAERIQKFL 1386
Query: 475 NRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRI 534
NRLV DHGS+DLEWLRDVPPD AK+YLLS RGLGLKSVECVRLLTLHHLAFPVDTNVGRI
Sbjct: 1387 NRLVTDHGSIDLEWLRDVPPDSAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRI 1446
Query: 535 AVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVF 594
VRLGWVP+QPLPESLQLHLLELYPVLE+IQKYLWPRLCKLDQ+TLYELHYQMITFGKVF
Sbjct: 1447 CVRLGWVPIQPLPESLQLHLLELYPVLETIQKYLWPRLCKLDQQTLYELHYQMITFGKVF 1506
Query: 595 CTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANENRTNTQNPAMMI-NQL 653
CTKS PNCNACPMR ECRHFASAFAS+RLALP P++K +V+ + N+ N M N
Sbjct: 1507 CTKSTPNCNACPMRSECRHFASAFASARLALPSPQDKRLVNLS-NQFAFHNGTMPTPNST 1565
Query: 654 PLPLTHATDLPVGKLEIAVNNCEPIIEEPATP-EPERVQVSENDIEDTFCEDPEEIPTIK 712
PLP + + ++ NN PIIEEPA+P E E ++ ENDIED F ED +EIPTIK
Sbjct: 1566 PLPQLEGS---IHARDVHANNTNPIIEEPASPREEECRELLENDIED-FDEDTDEIPTIK 1621
Query: 713 LNMKEFTQTLQNYMQE-NLELQEGDMSKALVALTAGAASIPAPKLKNVSRLRTEHQVYEL 771
LNM+ F+Q L+N ++E N + Q D++KALVA++ AASIP PKLKNV RLRTEH VYEL
Sbjct: 1622 LNMEAFSQNLENCIKESNKDFQSDDITKALVAISNEAASIPVPKLKNVHRLRTEHYVYEL 1681
Query: 772 PDSHPLLR--GMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQEHGKMCDEKTCFS 829
PDSHPL++ +E+REPDDP YLLAIWTP E ++ + P+ C+ Q G +C + C +
Sbjct: 1682 PDSHPLMQQLALEQREPDDPSPYLLAIWTPDELKDTREAPKPCCNPQTEGGLCSNEMCHN 1741
Query: 830 CNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWN 889
C S RE++++ VRGT+L+PCRTAMRGSFPLNGTYFQVNEVFADH SS PIN+PRE LWN
Sbjct: 1742 CVSERENQYRYVRGTVLVPCRTAMRGSFPLNGTYFQVNEVFADHSSSHNPINIPREQLWN 1801
Query: 890 LPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMARLHFPASKLN 949
L RR VYFGTS+P+IFKGLTTE IQHCFWRG+VCVRGF+ ++RAPRPL H ASKL
Sbjct: 1802 LHRRMVYFGTSVPTIFKGLTTEEIQHCFWRGFVCVRGFNMETRAPRPLCPHFHLAASKLR 1861
Query: 950 KVPGKA 955
+ KA
Sbjct: 1862 RSSKKA 1867
>gi|220682961|gb|ACL80319.1| DNA glycosylase/lyase 701 [Oryza sativa Japonica Group]
Length = 1812
Score = 779 bits (2011), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/619 (62%), Positives = 462/619 (74%), Gaps = 14/619 (2%)
Query: 346 LNLPKISSGSIDAIESHNALYNRENTQLKSSVSDQNKYDHSFSKELNGIDDATSKS---- 401
L+ K S + H +LY +++ + S NG+ D +++
Sbjct: 1193 LHCGKRSCYEASEFQDHESLYATGGVIPETATKADDSTLKSGFASFNGLPDTAAQASKPK 1252
Query: 402 KSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERG 461
KS SK+ +FDWD LRRQ N KER +DS+DWEAVRCADV +I++ I+ERG
Sbjct: 1253 KSRTTSKKNSENFDWDKLRRQACGNYQMKERIFDRRDSVDWEAVRCADVQRISHAIRERG 1312
Query: 462 MNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLH 521
MNN+LA RI+ FLNRLV DHGS+DLEWLRDVPPD AK+YLLS RGLGLKSVECVRLLTLH
Sbjct: 1313 MNNVLAERIQKFLNRLVTDHGSIDLEWLRDVPPDSAKDYLLSIRGLGLKSVECVRLLTLH 1372
Query: 522 HLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLY 581
HLAFPVDTNVGRI VRLGWVP+QPLPESLQLHLLELYPVLE+IQKYLWPRLCKLDQ+TLY
Sbjct: 1373 HLAFPVDTNVGRICVRLGWVPIQPLPESLQLHLLELYPVLETIQKYLWPRLCKLDQQTLY 1432
Query: 582 ELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANENRT 641
ELHYQMITFGKVFCTKSKPNCNACPMR ECRHFASAFAS+RLALP P++K +V+ + N+
Sbjct: 1433 ELHYQMITFGKVFCTKSKPNCNACPMRSECRHFASAFASARLALPSPQDKRLVNLS-NQF 1491
Query: 642 NTQNPAMMI-NQLPLPLTHATDLPVGKLEIAVNNCEPIIEEPATP-EPERVQVSENDIED 699
N M N PLP + + ++ NN PIIEEPA+P E E ++ ENDIED
Sbjct: 1492 AFHNGTMPTPNSTPLPQLEGS---IHARDVHANNTNPIIEEPASPREEECRELLENDIED 1548
Query: 700 TFCEDPEEIPTIKLNMKEFTQTLQNYMQE-NLELQEGDMSKALVALTAGAASIPAPKLKN 758
F ED +EIP IKLNM+ F+Q L+N ++E N + Q D++KALVA++ AASIP PKLKN
Sbjct: 1549 -FDEDTDEIPIIKLNMEAFSQNLENCIKESNKDFQSDDITKALVAISNEAASIPVPKLKN 1607
Query: 759 VSRLRTEHQVYELPDSHPLLR--GMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQ 816
V RLRTEH VYELPDSHPL++ +++REPDDP YLLAIWTP E ++ + P+ C+ Q
Sbjct: 1608 VHRLRTEHYVYELPDSHPLMQQLALDQREPDDPSPYLLAIWTPDELKDTREAPKPCCNPQ 1667
Query: 817 EHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSS 876
G +C + C +C S RE++++ VRGT+L+PCRTAMRGSFPLNGTYFQVNEVFADH SS
Sbjct: 1668 TEGGLCSNEMCHNCVSERENQYRYVRGTVLVPCRTAMRGSFPLNGTYFQVNEVFADHSSS 1727
Query: 877 LKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRP 936
PIN+PRE LWNL RR VYFGTS+P+IFKGLTTE IQHCFWRG+VCVRGF+ ++RAPRP
Sbjct: 1728 HNPINIPREQLWNLHRRMVYFGTSVPTIFKGLTTEEIQHCFWRGFVCVRGFNMETRAPRP 1787
Query: 937 LMARLHFPASKLNKVPGKA 955
L H ASKL + KA
Sbjct: 1788 LCPHFHLAASKLRRSSKKA 1806
>gi|222631766|gb|EEE63898.1| hypothetical protein OsJ_18723 [Oryza sativa Japonica Group]
Length = 1857
Score = 778 bits (2010), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/606 (62%), Positives = 458/606 (75%), Gaps = 14/606 (2%)
Query: 359 IESHNALYNRENTQLKSSVSDQNKYDHSFSKELNGIDDATSKS----KSTRVSKEKQNDF 414
+ H +LY +++ + S NG+ D +++ KS SK+ +F
Sbjct: 1251 FQDHESLYATGGVIPETATKADDSTLKSGFASFNGLPDTAAQASKPKKSRTTSKKNSENF 1310
Query: 415 DWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFL 474
DWD LRRQ N KER +DS+DWEAVRCADV +I++ I+ERGMNN+LA RI+ FL
Sbjct: 1311 DWDKLRRQACGNYQMKERIFDRRDSVDWEAVRCADVQRISHAIRERGMNNVLAERIQKFL 1370
Query: 475 NRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRI 534
NRLV DHGS+DLEWLRDVPPD AK+YLLS RGLGLKSVECVRLLTLHHLAFPVDTNVGRI
Sbjct: 1371 NRLVTDHGSIDLEWLRDVPPDSAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRI 1430
Query: 535 AVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVF 594
VRLGWVP+QPLPESLQLHLLELYPVLE+IQKYLWPRLCKLDQ+TLYELHYQMITFGKVF
Sbjct: 1431 CVRLGWVPIQPLPESLQLHLLELYPVLETIQKYLWPRLCKLDQQTLYELHYQMITFGKVF 1490
Query: 595 CTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANENRTNTQNPAMMI-NQL 653
CTKSKPNCNACPMR ECRHFASAFAS+RLALP P++K +V+ + N+ N M N
Sbjct: 1491 CTKSKPNCNACPMRSECRHFASAFASARLALPSPQDKRLVNLS-NQFAFHNGTMPTPNST 1549
Query: 654 PLPLTHATDLPVGKLEIAVNNCEPIIEEPATP-EPERVQVSENDIEDTFCEDPEEIPTIK 712
PLP + + ++ NN PIIEEPA+P E E ++ ENDIED F ED +EIP IK
Sbjct: 1550 PLPQLEGS---IHARDVHANNTNPIIEEPASPREEECRELLENDIED-FDEDTDEIPIIK 1605
Query: 713 LNMKEFTQTLQNYMQE-NLELQEGDMSKALVALTAGAASIPAPKLKNVSRLRTEHQVYEL 771
LNM+ F+Q L+N ++E N + Q D++KALVA++ AASIP PKLKNV RLRTEH VYEL
Sbjct: 1606 LNMEAFSQNLENCIKESNKDFQSDDITKALVAISNEAASIPVPKLKNVHRLRTEHYVYEL 1665
Query: 772 PDSHPLLR--GMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQEHGKMCDEKTCFS 829
PDSHPL++ +++REPDDP YLLAIWTP E ++ + P+ C+ Q G +C + C +
Sbjct: 1666 PDSHPLMQQLALDQREPDDPSPYLLAIWTPDELKDTREAPKPCCNPQTEGGLCSNEMCHN 1725
Query: 830 CNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWN 889
C S RE++++ VRGT+L+PCRTAMRGSFPLNGTYFQVNEVFADH SS PIN+PRE LWN
Sbjct: 1726 CVSERENQYRYVRGTVLVPCRTAMRGSFPLNGTYFQVNEVFADHSSSHNPINIPREQLWN 1785
Query: 890 LPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMARLHFPASKLN 949
L RR VYFGTS+P+IFKGLTTE IQHCFWRG+VCVRGF+ ++RAPRPL H ASKL
Sbjct: 1786 LHRRMVYFGTSVPTIFKGLTTEEIQHCFWRGFVCVRGFNMETRAPRPLCPHFHLAASKLR 1845
Query: 950 KVPGKA 955
+ KA
Sbjct: 1846 RSSKKA 1851
>gi|147785279|emb|CAN77395.1| hypothetical protein VITISV_035357 [Vitis vinifera]
Length = 1824
Score = 777 bits (2006), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/949 (49%), Positives = 588/949 (61%), Gaps = 91/949 (9%)
Query: 20 SSAFMSLAANFPLNSKQKPCHGEEITSVIEEPAEYVLDPEDTIEWKEKMSHQPVCDQGSM 79
SSAFMSLAA+FP +P E ++EEP L+PEDT+ W EKMS+Q VCDQ SM
Sbjct: 875 SSAFMSLAAHFPCKCNHRPSTELETRILVEEPEVCTLNPEDTVTWNEKMSNQAVCDQSSM 934
Query: 80 TLHGSESSEEREVVSSNNSLESSTSVVSSINESKCKLMNSSEIYPETYNDVLSSPNSLDS 139
TLH +E E V+SN S +S V +++ SK K+++S+ +D SS NSLD
Sbjct: 935 TLHHTE-----EAVNSNGSYGNSRGTVGTVDISKDKMLDSTGGDRTAADDAASSQNSLDF 989
Query: 140 SFAPFADGTISSSNSNSDAGDSSNVPT---LNSFNGSNSFVELLQMVGSTMLHGNYNHRN 196
S A A+ S S SNS+ D +PT LN+F+GS SFV LLQM ST LH + N
Sbjct: 990 SIAQTAEKIGSCSESNSEVEDI--MPTGYGLNNFDGSTSFVGLLQMAESTRLHEVFCRSN 1047
Query: 197 GHMSSDENSKDEHSQFQTLESNTQRVKVKD-IDDPKVLSRVSSIPPSSFHPCLTQDLSV- 254
+ + N KD ++ +++ +R + D + D + V+ IP S++H L + V
Sbjct: 1048 INATCGANPKDVNNHSESMSGYNKRSQNMDGLADCRSSLGVTIIPSSNYHLHLNPNSGVL 1107
Query: 255 EVESYEMRREETRSSGISD----VTDKIALMPEFASQTTDATKL---IVAGPEAPRHGNK 307
EVE +EM ETRSS IS V+++ L E +Q D KL I AGP + N
Sbjct: 1108 EVEGFEMS-GETRSSEISKDQKCVSEQSGLTAESDNQAKDEKKLTESIQAGPTSSCE-NT 1165
Query: 308 QSRNSMQANKNSIAQHESELFGDSRFAMEPPAHAQKNDL----NLPKISSGSIDAIESHN 363
S N++Q N I + +S GD + +E Q + + NL IS ++D I+ +
Sbjct: 1166 FSDNNLQGENNKIIESQSSPVGDXKNVVESVGQEQISRMQQSQNLMNISGKALDVIDXXS 1225
Query: 364 ALYNRENTQLKSSVSDQNKYDHSFSKELNGIDDATSKSKSTRVSKEKQNDFDWDSLRRQV 423
A N+ + + + S + ++ S SK N I TSK+K + +E++N WD+LR++
Sbjct: 1226 AFSNQTHIEDRKSETGVKEHGLSSSKASNEIGVDTSKAKKGKARREEKNTLHWDNLRKEA 1285
Query: 424 EANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGS 483
+ NG K+ER +T DSLDWEAVRC+DVN+IANTIKERGMNNMLA RIKDFLNRLVRDHGS
Sbjct: 1286 QVNGRKRERTVNTMDSLDWEAVRCSDVNEIANTIKERGMNNMLAERIKDFLNRLVRDHGS 1345
Query: 484 VDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPL 543
+DLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPL
Sbjct: 1346 IDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPL 1405
Query: 544 QPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCN 603
QPLPESLQ L LYELHYQMITFGKVFCTKSKPNCN
Sbjct: 1406 QPLPESLQ-----------------------LHLLELYELHYQMITFGKVFCTKSKPNCN 1442
Query: 604 ACPMRGECRHFASAFASSRLALPGPEEKAIVSANENRTNTQNPAMMINQLPLPLTHATDL 663
ACPMRGECRHFASAFAS+RLAL GPEE++IVS N N + NP + IN L
Sbjct: 1443 ACPMRGECRHFASAFASARLALTGPEERSIVSTNANESMDGNPDVTINPL-PLPPPLPQK 1501
Query: 664 PVGKLEIAVNNCEPIIEEPATPEPERVQVSENDIEDTFCEDPEEIPTIKLNMKEFTQTLQ 723
+ +NNCEPI+E PATPE E Q+ E+DIEDT EDP+EIPTIKLN++EFT LQ
Sbjct: 1502 QSSEANPGINNCEPIVEVPATPEQEHPQILESDIEDTLYEDPDEIPTIKLNIEEFTHNLQ 1561
Query: 724 NYMQENLELQEGDMSKALVALTAGAASIPAPKLKNVSRLRTEHQVYELPDSHPLLRGMEK 783
NYMQ N+ELQE DMSKALVALT ASIP PKLKNVSRLRTEH V+ + L+ +
Sbjct: 1562 NYMQRNMELQESDMSKALVALTPEVASIPMPKLKNVSRLRTEHHVWTKEN---LMIHVHT 1618
Query: 784 REPDDPGRYLLAIWTPGETANSIQPPESRCSSQEH-GKMCDEKTCFSCNSVRESEFQIVR 842
P P L + N ++ + + +++ K + C + F +
Sbjct: 1619 FSPFGPQVKLQIPF------NHLKEXVAXRNLEDYVMKRHASRAIIPCRTAMRGSFPL-N 1671
Query: 843 GTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIP 902
GT F +N + ADHDSSL PI+VPR W+WNLPRRTVYFGTSIP
Sbjct: 1672 GTY-----------FQVNEVF-------ADHDSSLNPIDVPRAWIWNLPRRTVYFGTSIP 1713
Query: 903 SIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMARLHFPASKLNKV 951
+IFK G+VCVRGFDQK+RAPRPLMARLHFPAS+L +
Sbjct: 1714 TIFK-------------GFVCVRGFDQKTRAPRPLMARLHFPASRLTRT 1749
>gi|339699499|gb|AEJ87849.1| hypothetical protein [Fragaria x ananassa]
Length = 496
Score = 772 bits (1994), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/500 (73%), Positives = 425/500 (85%), Gaps = 9/500 (1%)
Query: 430 KERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWL 489
+E+ +T DS+DWEAVR A+VN IA TIKERGMNNMLA RIK+FLNRL+R+HGSVDLEWL
Sbjct: 1 REKTRNTMDSVDWEAVRTANVNDIAQTIKERGMNNMLAERIKEFLNRLLREHGSVDLEWL 60
Query: 490 RDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPES 549
RDVPPD+AKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPES
Sbjct: 61 RDVPPDQAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPES 120
Query: 550 LQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRG 609
LQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHY+MITFGKVFCTKSKPNCNACPMRG
Sbjct: 121 LQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYRMITFGKVFCTKSKPNCNACPMRG 180
Query: 610 ECRHFASAFASSRLALPGPEEKAIVSANENRTNTQNPAMMINQLPLPLTHATDLPVGKLE 669
ECRHFASAFAS+RLALPGP +K+IVS+ + +NPA++ N + LP + P+ K
Sbjct: 181 ECRHFASAFASARLALPGPGQKSIVSSTSSPVAEKNPAVVGNIMSLP--PPENYPLQK-- 236
Query: 670 IAVNNCEPIIEEPATPEPERVQVSENDIEDTF-----CEDPEEIPTIKLNMKEFTQTLQN 724
+ EPIIEEP +PE E +S ++IED +DP++I I ++M++ T TLQ+
Sbjct: 237 VGAYRSEPIIEEPVSPEQEFTNLSHSEIEDLLNEEEYDDDPDDITHINISMEQLTDTLQD 296
Query: 725 YMQENLELQEGDMSKALVALTAGAASIPAPKLKNVSRLRTEHQVYELPDSHPLLRGMEKR 784
+MQ N++L++GD+SKALVAL A S+P PKLK+VSRLRTEHQVYELPDSHPLL G+++
Sbjct: 297 HMQNNMDLKDGDLSKALVALNPAATSLPTPKLKDVSRLRTEHQVYELPDSHPLLEGVDRL 356
Query: 785 EPDDPGRYLLAIWTPGETANSIQPPESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGT 844
EPDDP YLLAIWTPGETANS QPPES C S+E +C EKTCF+CNS+RE + QIVRGT
Sbjct: 357 EPDDPSPYLLAIWTPGETANSFQPPESSCGSKEGNTLCSEKTCFTCNSIREEKSQIVRGT 416
Query: 845 ILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSI 904
ILIPCRTAMRGSFPLNGTYFQVNE+FADH SS PI+VPR W+WNLPRR VYFGTS+ SI
Sbjct: 417 ILIPCRTAMRGSFPLNGTYFQVNEMFADHASSANPIDVPRGWIWNLPRRPVYFGTSVTSI 476
Query: 905 FKGLTTEGIQHCFWRGYVCV 924
F+GLTTEGIQ+CFW+GYVCV
Sbjct: 477 FRGLTTEGIQYCFWKGYVCV 496
>gi|242065150|ref|XP_002453864.1| hypothetical protein SORBIDRAFT_04g019820 [Sorghum bicolor]
gi|241933695|gb|EES06840.1| hypothetical protein SORBIDRAFT_04g019820 [Sorghum bicolor]
gi|333471385|gb|AEF38426.1| 5-methylcytosine DNA glycosylase [Sorghum bicolor]
Length = 1891
Score = 763 bits (1970), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/568 (65%), Positives = 437/568 (76%), Gaps = 46/568 (8%)
Query: 401 SKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKER 460
SK+ +V + +DWDSLR++V +NGG K+R +D++DWEAVR A+V +I+ TI+ER
Sbjct: 1353 SKAKKVRGRPRKTYDWDSLRKEVLSNGGDKQRSHDARDTVDWEAVRQAEVREISETIRER 1412
Query: 461 GMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTL 520
GMNNMLA RIK+FLNRLV DHGS+DLEWLRDV PDKAK++LLS RGLGLKSVECVRLLTL
Sbjct: 1413 GMNNMLAERIKEFLNRLVTDHGSIDLEWLRDVQPDKAKDFLLSIRGLGLKSVECVRLLTL 1472
Query: 521 HHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTL 580
HH+AFPVDTNVGRI VRLGWVPLQPLPESLQLHLLE+Y
Sbjct: 1473 HHMAFPVDTNVGRICVRLGWVPLQPLPESLQLHLLEMY---------------------- 1510
Query: 581 YELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANENR 640
ELHYQMITFGKVFCTKSKPNCN+CPMR EC+HFASAFAS+RLALP PEEK + ++ +
Sbjct: 1511 -ELHYQMITFGKVFCTKSKPNCNSCPMRAECKHFASAFASARLALPAPEEKRLATSED-- 1567
Query: 641 TNTQNPAMMINQLPLPLTHATDLPVGKLEIAVN--------NCEPIIEEPATPEPE--RV 690
N +Q T+ VG+LE + N N +PIIEEP +PEPE V
Sbjct: 1568 ---ANVVEFCHQ-----TYINSGTVGQLEWSANYPKHAVSGNHQPIIEEPLSPEPEPENV 1619
Query: 691 QVSENDIEDTFCEDPEEIPTIKLNMKEFTQTLQNYMQ-ENLELQEGDMSKALVALTAGAA 749
+ E IED FCEDP+EIPTI LN++EFTQ L+NYMQ N++++ DMSKALVA+T AA
Sbjct: 1620 EAKEGAIEDFFCEDPDEIPTINLNIEEFTQNLKNYMQANNVDIEYADMSKALVAITPDAA 1679
Query: 750 SIPAPKLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPP 809
SIP PKLKN+SRLRTEHQVYELPDSHPLL G E+REPDDP YLL+IWTPGETA S P
Sbjct: 1680 SIPTPKLKNISRLRTEHQVYELPDSHPLLDGFEQREPDDPCPYLLSIWTPGETAQSTDAP 1739
Query: 810 ESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEV 869
++ C S E G++C TCFSCNS+RE + Q VRGT+LIPCRTAMRGSFPLNGTYFQVNEV
Sbjct: 1740 KTFCDSGETGRLCGSSTCFSCNSIREMQAQKVRGTLLIPCRTAMRGSFPLNGTYFQVNEV 1799
Query: 870 FADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQ 929
FADH SS PI+VPR W+W+LPRRTVYFGTS+P+IF+GLTTE IQ CFWRG+VCVRGFD+
Sbjct: 1800 FADHYSSQNPIDVPRSWIWDLPRRTVYFGTSVPTIFRGLTTEQIQQCFWRGFVCVRGFDR 1859
Query: 930 KSRAPRPLMARLHFPASKL--NKVPGKA 955
RAPRPL ARLHFPASK+ K PG A
Sbjct: 1860 TVRAPRPLYARLHFPASKVVRGKKPGAA 1887
>gi|242085358|ref|XP_002443104.1| hypothetical protein SORBIDRAFT_08g008620 [Sorghum bicolor]
gi|241943797|gb|EES16942.1| hypothetical protein SORBIDRAFT_08g008620 [Sorghum bicolor]
Length = 1856
Score = 761 bits (1964), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/570 (65%), Positives = 440/570 (77%), Gaps = 47/570 (8%)
Query: 399 SKSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIK 458
SK+K R K+ +DWDSLR++V +NGG K+R +D++DWEAVR A+V +I+ TI+
Sbjct: 1316 SKAKKVR-GPPKKKTYDWDSLRKEVLSNGGDKQRSHDARDTVDWEAVRQAEVREISETIR 1374
Query: 459 ERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLL 518
ERGMNNMLA RIK+FL+RLV DHGS+DLEWLRDV PDKAK++LLS RGLGLKSVECVRLL
Sbjct: 1375 ERGMNNMLAERIKEFLDRLVTDHGSIDLEWLRDVQPDKAKDFLLSIRGLGLKSVECVRLL 1434
Query: 519 TLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQR 578
TLHH+AFPVDTNVGRI VRLGWVPLQPLPESLQLHLLE+Y
Sbjct: 1435 TLHHMAFPVDTNVGRICVRLGWVPLQPLPESLQLHLLEMY-------------------- 1474
Query: 579 TLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANE 638
ELHYQMITFGKVFCTKSKPNCN+CPMR EC+HFASAFAS+RLALP PEEK + ++
Sbjct: 1475 ---ELHYQMITFGKVFCTKSKPNCNSCPMRVECKHFASAFASARLALPAPEEKRLATS-- 1529
Query: 639 NRTNTQNPAMMINQLPLPLTHATDLPVGKLEIAVN--------NCEPIIEEPATPEPE-- 688
++P + P+ + T VG+LE N N +PIIEEP +PEPE
Sbjct: 1530 -----EDPNVAEFCHPIYINSGT---VGQLEWTANYPKHAVSDNHQPIIEEPLSPEPEPE 1581
Query: 689 RVQVSENDIEDTFCEDPEEIPTIKLNMKEFTQTLQNYMQ-ENLELQEGDMSKALVALTAG 747
V+ E IED FCEDP+EIPTI LN++EFTQ L+NYMQ N+E++ DMSKALVA+T
Sbjct: 1582 NVEAKEGAIEDFFCEDPDEIPTINLNIEEFTQNLKNYMQANNVEIEYADMSKALVAITPD 1641
Query: 748 AASIPAPKLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQ 807
AASIP PKLKNVSRLRTEHQVYELPDSHPLL G E+REPDDP YLL+IWTPGETA S
Sbjct: 1642 AASIPTPKLKNVSRLRTEHQVYELPDSHPLLEGFEQREPDDPCPYLLSIWTPGETAQSTD 1701
Query: 808 PPESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVN 867
P++ C S E G++C TCFSCNS+RE++ Q VRGT+LIPCRTAMRGSFPLNGTYFQVN
Sbjct: 1702 APKTFCDSGETGRLCGSSTCFSCNSIRETQAQKVRGTLLIPCRTAMRGSFPLNGTYFQVN 1761
Query: 868 EVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGF 927
EVFADH SS PI+VPR W+W+LPRRTVYFGTS+P+IF+GLTTE IQ CFWRG+VCVRGF
Sbjct: 1762 EVFADHYSSQNPIDVPRSWIWDLPRRTVYFGTSVPTIFRGLTTEEIQQCFWRGFVCVRGF 1821
Query: 928 DQKSRAPRPLMARLHFPASKL--NKVPGKA 955
D+ RAPRPL ARLHFPASK+ + PG A
Sbjct: 1822 DRTVRAPRPLYARLHFPASKVVRGRKPGAA 1851
>gi|413936924|gb|AFW71475.1| hypothetical protein ZEAMMB73_049283 [Zea mays]
Length = 1906
Score = 756 bits (1952), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/682 (58%), Positives = 479/682 (70%), Gaps = 69/682 (10%)
Query: 304 HGNKQSRNSMQA---------NKNSIAQHESELFGDSRFAMEPPAHAQKNDLNLPKISSG 354
+GN SRN +A N + +E G +F + Q ND+ ++ +
Sbjct: 1266 YGNDFSRNKTEAAIMEPLVYSNPQELYTTSTEQMGVEQF--QSGCGQQDNDV---RVQTT 1320
Query: 355 SIDAIESHNALYNRENTQLK-----SSVSDQNKYDHSFSKELNGIDDATSKSKSTRVSKE 409
S + +S + L +N+QL+ +S S Q D K + + SK+K R +
Sbjct: 1321 SYERHQS-STLCGNQNSQLEILQGVASGSTQKFIDTQ--KSPSEVQQNGSKAKKVR-GRP 1376
Query: 410 KQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGR 469
K +DWDSLR++V +NGG K+R +D++DWEAVR A+V +I+ TI+ERGMNNMLA R
Sbjct: 1377 KTKTYDWDSLRKEVFSNGGDKQRNNDARDTVDWEAVRQAEVREISETIRERGMNNMLAER 1436
Query: 470 IKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDT 529
IK+FLNRLV DHG +DLEWLRDVPPDKAK++LLS RGLGLKSVECVRLLTLHH+AFPVDT
Sbjct: 1437 IKEFLNRLVTDHGGIDLEWLRDVPPDKAKDFLLSIRGLGLKSVECVRLLTLHHMAFPVDT 1496
Query: 530 NVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMIT 589
NVGRI VRLGWVPLQPLPESLQLHLLE+Y ELHYQMIT
Sbjct: 1497 NVGRICVRLGWVPLQPLPESLQLHLLEMY-----------------------ELHYQMIT 1533
Query: 590 FGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANENRTNTQNPAMM 649
FGKVFCTKSKPNCN+CP+R EC+HFASAFAS+RLALP PEEK + ++ + N
Sbjct: 1534 FGKVFCTKSKPNCNSCPLRAECKHFASAFASARLALPAPEEKRLATSED-----PNVVEF 1588
Query: 650 INQLPLPLTHATDLPVGKLEIAVN--------NCEPIIEEPATPEPERVQVSEND--IED 699
+Q T+ VG+LE + N N +P IEEP +PEPE V D IED
Sbjct: 1589 CHQ-----TYINSGAVGELEWSANYPKHAVCGNLQPFIEEPLSPEPEPENVEAKDGAIED 1643
Query: 700 TFCEDPEEIPTIKLNMKEFTQTLQNYMQEN-LELQEGDMSKALVALTAGAASIPAPKLKN 758
F EDP+EIPTI LN++EFTQ L+NYMQ N +E++ DMSKALVA+T AASIP PKLKN
Sbjct: 1644 FFNEDPDEIPTINLNIEEFTQNLKNYMQANHVEIEYADMSKALVAITPEAASIPTPKLKN 1703
Query: 759 VSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQEH 818
VSRLRTEHQVYELPDSHPLL G E+REPDDP YLL+IWTPGETA S P++ C S E
Sbjct: 1704 VSRLRTEHQVYELPDSHPLLEGFEQREPDDPCPYLLSIWTPGETAQSTNAPKTFCDSGET 1763
Query: 819 GKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLK 878
G++C TCFSCNS+RE + Q VRGT+LIPCRTAMRGSFPLNGTYFQVNEVFADH SS
Sbjct: 1764 GQLCGSLTCFSCNSLREMQAQKVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHCSSQN 1823
Query: 879 PINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLM 938
PI+VPR W+W+LPRRTVYFGTS+P+IF+GLTTE IQ CFWRG+VCVRGFD+ RAPRPL
Sbjct: 1824 PIDVPRSWIWDLPRRTVYFGTSVPTIFRGLTTEEIQQCFWRGFVCVRGFDRTVRAPRPLY 1883
Query: 939 ARLHFPASKL--NKVPGKADAD 958
ARLHFPASK+ K PG A +
Sbjct: 1884 ARLHFPASKVVRGKKPGAASVE 1905
>gi|222631769|gb|EEE63901.1| hypothetical protein OsJ_18726 [Oryza sativa Japonica Group]
Length = 1837
Score = 752 bits (1941), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/605 (61%), Positives = 449/605 (74%), Gaps = 32/605 (5%)
Query: 359 IESHNALYNRENTQLKSSVSDQNKYDHSFSKELNGIDDATSKS----KSTRVSKEKQNDF 414
+ H +LY +++ + S NG+ D +++ K SK+ +F
Sbjct: 1241 FQDHESLYATGGAIPETATKADDSTLKSGFASFNGLPDTAAQASKPKKPRTTSKKNSENF 1300
Query: 415 DWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFL 474
DWD LRRQ N KER +DS+DWEAVRCADV +I++ I+ERGMNN+LA RI+ FL
Sbjct: 1301 DWDKLRRQACGNYQMKERIFDRRDSVDWEAVRCADVQRISHAIRERGMNNVLAERIQKFL 1360
Query: 475 NRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRI 534
NRLV DHGS+DLEWLRDVPPD AK+YLLS RGLGLKSVECVRLLTLHHLAFPVDTNVGRI
Sbjct: 1361 NRLVTDHGSIDLEWLRDVPPDSAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRI 1420
Query: 535 AVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVF 594
VRLGWVP+QPLPESLQLHLLELYPVLE+IQKYLWPRLCKLDQ+TLYELHYQMITFGKVF
Sbjct: 1421 CVRLGWVPIQPLPESLQLHLLELYPVLETIQKYLWPRLCKLDQQTLYELHYQMITFGKVF 1480
Query: 595 CTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANENRTNTQNPAMMINQLP 654
CTKSKPNCNACPMR EC+HFASAFAS+RLALP P++K +V+ + N+ + QN M
Sbjct: 1481 CTKSKPNCNACPMRSECKHFASAFASARLALPSPQDKRLVNMS-NQFDFQNGTM------ 1533
Query: 655 LPLTHATDL-----PVGKLEIAVNNCEPIIEEPATP-EPERVQVSENDIEDTFCEDPEEI 708
P H+T L + ++ NN PIIEEPA+P E E ++ ENDIED F ED +EI
Sbjct: 1534 -PTPHSTPLLQLEGSIHARDVHANNTNPIIEEPASPREEECRELLENDIED-FDEDTDEI 1591
Query: 709 PTIKLNMKEFTQTLQNYMQE-NLELQEGDMSKALVALTAGAASIPAPKLKNVSRLRTEHQ 767
PTIKLNM+ F Q L+N ++E N + Q D++KALVA++ AASIP PKLKNV RLRTEH
Sbjct: 1592 PTIKLNMEAFAQNLENCIKESNKDFQSDDITKALVAISNEAASIPVPKLKNVHRLRTEHY 1651
Query: 768 VYELPDSHPLLR--GMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQEHGKMCDEK 825
VYELPDSHPL++ +++REPDD P E ++ + P+ C+ Q G +C +
Sbjct: 1652 VYELPDSHPLMQQLALDQREPDD----------PNELKDTREAPKPCCNPQTEGGLCSNE 1701
Query: 826 TCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPRE 885
C +C S RE++++ VRGT+L+PCRTAMRGSFPLNGTYFQVNEVFADH SS PIN+PRE
Sbjct: 1702 MCHNCVSERENQYRYVRGTVLVPCRTAMRGSFPLNGTYFQVNEVFADHSSSHNPINIPRE 1761
Query: 886 WLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMARLHFPA 945
LWNL RR VYFGTS+P+IFKGLTTE IQHCFWRG+VCVRGFD ++RAPRPL H A
Sbjct: 1762 QLWNLHRRMVYFGTSVPTIFKGLTTEEIQHCFWRGFVCVRGFDMETRAPRPLCPHFHLAA 1821
Query: 946 SKLNK 950
SKL +
Sbjct: 1822 SKLRR 1826
>gi|413945495|gb|AFW78144.1| hypothetical protein ZEAMMB73_419140 [Zea mays]
Length = 909
Score = 751 bits (1938), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/622 (60%), Positives = 457/622 (73%), Gaps = 28/622 (4%)
Query: 346 LNLPKIS-----------SGSIDA--IESHNALYNRENTQLKSSVSDQNKYDHSFSKELN 392
LN PKIS S S +A ++ H +++ ++++ + S N
Sbjct: 280 LNTPKISTELPVKLHHDKSSSFEAPNLKEHESVFATHEMTVEATRKEDEHTSKSSFTSYN 339
Query: 393 GIDDAT---SKSKSTRVSKEKQND-FDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCA 448
G+ D SK K TR + K + FDW+ LRRQ + G K+R +DS+DWEAVRCA
Sbjct: 340 GVPDTAAQASKPKKTRTTTAKNTENFDWEKLRRQACSEGQMKQRSFERRDSIDWEAVRCA 399
Query: 449 DVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLG 508
DV +I++ I+ERGMNN+LA RI++FLNRLVRDHGS+DLEWLR +PPD AK+YLLS RGLG
Sbjct: 400 DVRRISHAIRERGMNNVLAERIQNFLNRLVRDHGSIDLEWLRYIPPDSAKDYLLSIRGLG 459
Query: 509 LKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYL 568
LKSVECVRLLTLHHLAFPVDTNVGRI VRLGWVP+QPLPESLQLHLLELYP+LE+IQKYL
Sbjct: 460 LKSVECVRLLTLHHLAFPVDTNVGRICVRLGWVPIQPLPESLQLHLLELYPILETIQKYL 519
Query: 569 WPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGP 628
WPRLCKLDQ+TLYELHYQMITFGKVFCTK +PNCNACPMR EC+HFASAFAS+RLALP P
Sbjct: 520 WPRLCKLDQQTLYELHYQMITFGKVFCTKRQPNCNACPMRSECKHFASAFASARLALPAP 579
Query: 629 EEKAIVSANENRTNTQNPAM-MINQLPLPLTHATDLPVGKLEIAVNNCEPIIEEPATPEP 687
+E+++V + N QN +M +N LP + + E N EPIIEEPA+P
Sbjct: 580 QEESLVKLS-NPFAFQNSSMHAMNSTHLPRLEGS---IHSREFLPKNSEPIIEEPASPRE 635
Query: 688 ER-VQVSENDIEDTFCEDPEEIPTIKLNMKEFTQTLQNYMQE-NLELQEGDMSKALVALT 745
ER + ENDIED F ED EIPTIKLNM+ F Q L+N ++E N ELQ D++KALVA++
Sbjct: 636 ERPPETMENDIED-FYED-GEIPTIKLNMEAFAQNLENCIKESNNELQSDDIAKALVAIS 693
Query: 746 AGAASIPAPKLKNVSRLRTEHQVYELPDSHPLLR--GMEKREPDDPGRYLLAIWTPGETA 803
AASIP PKLKNV RLRTEH VYELPD+HPLL+ G+++RE DDP YLLAIWTP
Sbjct: 694 TEAASIPVPKLKNVLRLRTEHYVYELPDAHPLLQQLGLDQREHDDPTPYLLAIWTPDGIK 753
Query: 804 NSIQPPESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTY 863
+ P+ C Q G +C+ + C +C + +E++ + VRGTIL+PCRTAMRGSFPLNGTY
Sbjct: 754 EITKTPKPCCDPQMGGDLCNNEMCHNCTAEKENQSRYVRGTILVPCRTAMRGSFPLNGTY 813
Query: 864 FQVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVC 923
FQVNEVFADH SS PI+V RE LWNL RR V+FGTS+P+IFKGL TE IQ CFWRG+VC
Sbjct: 814 FQVNEVFADHRSSHNPIHVEREMLWNLQRRMVFFGTSVPTIFKGLRTEEIQQCFWRGFVC 873
Query: 924 VRGFDQKSRAPRPLMARLHFPA 945
VRGFD ++RAPRPL LH A
Sbjct: 874 VRGFDMETRAPRPLCPHLHIIA 895
>gi|226499668|ref|NP_001146555.1| uncharacterized protein LOC100280151 [Zea mays]
gi|219887797|gb|ACL54273.1| unknown [Zea mays]
Length = 501
Score = 747 bits (1928), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/510 (70%), Positives = 413/510 (80%), Gaps = 23/510 (4%)
Query: 462 MNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLH 521
MNNMLA RIK+FLNRLV DHGS+DLEWLRDV PDKAK++LLS RGLGLKSVECVRLLTLH
Sbjct: 1 MNNMLAERIKEFLNRLVTDHGSIDLEWLRDVQPDKAKDFLLSIRGLGLKSVECVRLLTLH 60
Query: 522 HLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLY 581
H+AFPVDTNVGRI VRLGWVPLQPLPESLQLHLLE+YP+LE IQKYLWPRLCKLDQRTLY
Sbjct: 61 HMAFPVDTNVGRICVRLGWVPLQPLPESLQLHLLEMYPMLEHIQKYLWPRLCKLDQRTLY 120
Query: 582 ELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANENRT 641
ELHYQMITFGKVFCTKSKPNCN+CPMR EC+HFASAFAS+RLALP PEEK +V+ +
Sbjct: 121 ELHYQMITFGKVFCTKSKPNCNSCPMRAECKHFASAFASARLALPAPEEKCLVTLED--- 177
Query: 642 NTQNPAMMINQLPLPLTHATDLPVGKLEIAVN--------NCEPIIEEPATPE--PERVQ 691
N +Q T+ VG+LE + N N +PIIEEP +PE E ++
Sbjct: 178 --PNVVEFSHQ-----TYINSGSVGQLEWSANYPKHAVSGNHQPIIEEPLSPECETENIE 230
Query: 692 VSENDIEDTFCEDPEEIPTIKLNMKEFTQTLQNYMQ-ENLELQEGDMSKALVALTAGAAS 750
E IED FCE+ +EIPTI LN++EFTQ L++YMQ N+E++ DMSKALVA+T AAS
Sbjct: 231 AHEGAIEDFFCEESDEIPTINLNIEEFTQNLKDYMQANNVEIEYADMSKALVAITPDAAS 290
Query: 751 IPAPKLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPE 810
IP PKLKNV+RLRTEHQVYELPDSHPLL G E+REPDDP YLL+IWTPGETA SI P+
Sbjct: 291 IPTPKLKNVNRLRTEHQVYELPDSHPLLEGFEQREPDDPCPYLLSIWTPGETAQSIDAPK 350
Query: 811 SRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVF 870
+ C S E G++C CFSCN++RE + Q VRGT+LIPCRTAMRGSFPLNGTYFQVNEVF
Sbjct: 351 TFCDSGETGRLCGSSICFSCNNIREMQAQKVRGTLLIPCRTAMRGSFPLNGTYFQVNEVF 410
Query: 871 ADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQK 930
ADH SS PI+VPR W+W+LPRRTVYFGTS+P+IF+GLTTE IQ CFWRG+VCVRGFD+
Sbjct: 411 ADHCSSQNPIDVPRSWIWDLPRRTVYFGTSVPTIFRGLTTEEIQRCFWRGFVCVRGFDRT 470
Query: 931 SRAPRPLMARLHFPASKL--NKVPGKADAD 958
RAPRPL ARLHFP SK+ K PG A A+
Sbjct: 471 VRAPRPLYARLHFPVSKVVRGKKPGAARAE 500
>gi|357152016|ref|XP_003575981.1| PREDICTED: uncharacterized protein LOC100830449 [Brachypodium
distachyon]
Length = 1717
Score = 742 bits (1915), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/561 (64%), Positives = 432/561 (77%), Gaps = 22/561 (3%)
Query: 399 SKSKSTRVSKEKQ-NDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTI 457
SK K TR + +K +FDWD RRQ +G ER +DS++WEAVRCADV +I++ I
Sbjct: 1135 SKPKKTRTTNKKNMENFDWDKFRRQAYDDGHMNERSFERRDSVNWEAVRCADVQRISHAI 1194
Query: 458 KERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRL 517
+ERGMNN+LA RI++FL RLVRDHGS+DLEWLRD+PPD AK+YLLS RGLGLKSVECVRL
Sbjct: 1195 RERGMNNVLAERIQNFLKRLVRDHGSIDLEWLRDIPPDSAKDYLLSIRGLGLKSVECVRL 1254
Query: 518 LTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQ 577
LTLHHLAFPVDTNVGRI VRLGWVP+QPLPESLQLHLLELYPVLE+IQKYLWPRLCKLDQ
Sbjct: 1255 LTLHHLAFPVDTNVGRICVRLGWVPIQPLPESLQLHLLELYPVLETIQKYLWPRLCKLDQ 1314
Query: 578 RTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSAN 637
+TLYELHYQMITFGKVFCTKSKPNCNACPMR EC+HFASAFAS+RLALP P+EK++V ++
Sbjct: 1315 QTLYELHYQMITFGKVFCTKSKPNCNACPMRSECKHFASAFASARLALPAPQEKSLVKSS 1374
Query: 638 ENRTNTQNPAMMINQLPLPLTHATDLP------VGKLEIAVNNCEPIIEEPATPEPERV- 690
N+ + +N LP ++T LP G+ + NN EPI+EEPA+P E
Sbjct: 1375 -NQFSFENGG-------LPTRNSTVLPQLEGSTFGR-DFPANNSEPIVEEPASPREEECP 1425
Query: 691 QVSENDIEDTFCEDPEEIPTIKLNMKEFTQTLQNYMQE-NLELQEGDMSKALVALTAGAA 749
+ NDIED + D EIPTIKLNM+ F + L+N ++E N +LQ GD++KALVA++ AA
Sbjct: 1426 ETLVNDIED-YDVDTGEIPTIKLNMETFARNLENCIKESNNDLQFGDIAKALVAISTQAA 1484
Query: 750 SIPAPKLKNVSRLRTEHQVYELPDSHPLLRGME--KREPDDPGRYLLAIWTPGETANSIQ 807
SIPAPKLKNV RLRTEH VYELPDSH L++ +E +REPDDP YLL IW + +
Sbjct: 1485 SIPAPKLKNVHRLRTEHYVYELPDSHSLVQQLELDQREPDDPSPYLLTIWMEDDIKEMSK 1544
Query: 808 PPESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVN 867
+S C S+ C+ + C C RE++ + VRGTIL+PCRTAM+GSFPLNGTYFQVN
Sbjct: 1545 ASKSCCDSEVETGFCNNE-CHYCVPERENQSRYVRGTILVPCRTAMKGSFPLNGTYFQVN 1603
Query: 868 EVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGF 927
EVFADH SS PI V RE LWNL RR VYFGTS+PSIFKGLTTE +Q CFWRG+VCVRGF
Sbjct: 1604 EVFADHKSSHDPIYVAREQLWNLQRRMVYFGTSVPSIFKGLTTEKVQQCFWRGFVCVRGF 1663
Query: 928 DQKSRAPRPLMARLHFPASKL 948
D ++RAPRPL LH AS+L
Sbjct: 1664 DMETRAPRPLCPHLHLAASRL 1684
>gi|242090707|ref|XP_002441186.1| hypothetical protein SORBIDRAFT_09g021920 [Sorghum bicolor]
gi|241946471|gb|EES19616.1| hypothetical protein SORBIDRAFT_09g021920 [Sorghum bicolor]
Length = 1704
Score = 729 bits (1881), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/563 (64%), Positives = 424/563 (75%), Gaps = 48/563 (8%)
Query: 392 NGIDDATS---KSKSTRVSKEKQ-NDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRC 447
NG+ D + K+K TR + +K +FDWD LRRQ + G K R +DS+DWEAVRC
Sbjct: 1167 NGVPDTAAQAPKAKKTRTATKKDAENFDWDKLRRQAYSEGQMKTRSVERRDSVDWEAVRC 1226
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
AD +I++ I+ERGMNN+LA RI++FLNRLVRDHGS+DLEWLR +PPD AK+YLLS RGL
Sbjct: 1227 ADAQRISHAIRERGMNNILAERIQNFLNRLVRDHGSIDLEWLRYIPPDSAKDYLLSIRGL 1286
Query: 508 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 567
GLKSVECVRLLTLHHLAFPVDTNVGRI VRLGWVP+QPLPESLQLHLLELYP+LE+IQKY
Sbjct: 1287 GLKSVECVRLLTLHHLAFPVDTNVGRICVRLGWVPIQPLPESLQLHLLELYPILETIQKY 1346
Query: 568 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPG 627
LWPRLCKLDQ+TLYELHYQMITFGKVFCTKSKPNCNACPMR EC+HFASAFAS+RLALP
Sbjct: 1347 LWPRLCKLDQQTLYELHYQMITFGKVFCTKSKPNCNACPMRSECKHFASAFASARLALPA 1406
Query: 628 PEEKAIVSANENRTNTQNPAM-MINQLPLPLTHATDLPVGKLEIAVNNCEPIIEEPATPE 686
P+EK++V + N+ QN +M +N LP + + E N EPIIEEPA+P
Sbjct: 1407 PQEKSLVKLS-NQFAFQNSSMHTMNSTHLPRLEGS---LHSREFLPKNSEPIIEEPASPR 1462
Query: 687 PER-VQVSENDIEDTFCEDPEEIPTIKLNMKEFTQTLQNYMQE-NLELQEGDMSKALVAL 744
E + ENDIED F ED EIPTIKLNM+ F Q L+N ++E N ELQ D++KALVA+
Sbjct: 1463 EEGPPETIENDIED-FYED-GEIPTIKLNMEVFAQNLENCIKESNNELQSDDIAKALVAI 1520
Query: 745 TAGAASIPAPKLKNVSRLRTEHQVYELPDSHPLLR--GMEKREPDDPGRYLLAIWTPGET 802
+ AASIP PKLKNV RLRTEH VYELPD+HPLL+ G+++REPDDP YLLAIWTP
Sbjct: 1521 STEAASIPVPKLKNVHRLRTEHYVYELPDAHPLLQQLGLDQREPDDPTPYLLAIWTPE-- 1578
Query: 803 ANSIQPPESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGT 862
+E++ + VRGTIL+PCRTAMRGSFPLNGT
Sbjct: 1579 -------------------------------KENQSRYVRGTILVPCRTAMRGSFPLNGT 1607
Query: 863 YFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYV 922
YFQVNEVFADH SS PI+V RE LWNL RR V+FGTS+P+IFKGLTTE IQ CFWRG+V
Sbjct: 1608 YFQVNEVFADHRSSHNPIHVQREQLWNLQRRMVFFGTSVPTIFKGLTTEEIQQCFWRGFV 1667
Query: 923 CVRGFDQKSRAPRPLMARLHFPA 945
CVRGFD ++RAPRPL LH A
Sbjct: 1668 CVRGFDMETRAPRPLCPHLHVVA 1690
>gi|138996990|dbj|BAF52857.1| repressor of silencing 2b [Nicotiana tabacum]
Length = 1673
Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/519 (64%), Positives = 407/519 (78%), Gaps = 19/519 (3%)
Query: 326 ELFGDSRFAMEPPAHAQKNDLNLPKI------SSGSIDAIESHNALYNRENTQLKSSVSD 379
E ++ +E + D N+P++ S +I+ E + + + ++ ++ S+
Sbjct: 1152 ETVNNAEVNVELQFQTEDRDCNVPQVPEAPTSSETNIEVTERASIVVDSCKSERRAVESN 1211
Query: 380 -QNKYDHSFSKELNGIDDATSKSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKD 438
+N DH+ SK ++ ++D SK+K ++ KEK+N DWDSLR + +ANG K+E+ +T D
Sbjct: 1212 LKNVSDHACSK-VDSVNDNPSKAKKGQLGKEKEN-IDWDSLRLEAQANGKKREKTANTLD 1269
Query: 439 SLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAK 498
SLDWEAVRCA+VN+IA+TI+ERGMNN LA RIK+FLNR+V +HGS+DLEWLRDVPPDKAK
Sbjct: 1270 SLDWEAVRCANVNEIAHTIRERGMNNKLAERIKNFLNRIVSEHGSIDLEWLRDVPPDKAK 1329
Query: 499 EYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY 558
EYLLS RGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY
Sbjct: 1330 EYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY 1389
Query: 559 PVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAF 618
P+LESIQKYLWPRLCKLDQRTLYELHY MITFGKVFCTKSKPNCNACP+RGECRHFASAF
Sbjct: 1390 PILESIQKYLWPRLCKLDQRTLYELHYHMITFGKVFCTKSKPNCNACPLRGECRHFASAF 1449
Query: 619 ASSRLALPGPEEKAIVSANENRTNTQNPAMMINQLPLPLTHATDLPVGKLEIAVNNC--- 675
AS+RLALP PEEK+IVSA EN+ + NP LPLPL PV ++ +N+
Sbjct: 1450 ASARLALPAPEEKSIVSATENKASNNNPRENFTHLPLPLPPGNQQPVEHQKL-INSAPII 1508
Query: 676 ------EPIIEEPATPEPERVQVSENDIEDTFCEDPEEIPTIKLNMKEFTQTLQNYMQEN 729
EPI+E PATPE E++Q E DIEDT+ EDP EIPTI+LNM EFTQ L+ Y++ N
Sbjct: 1509 EVPATPEPIVELPATPEQEQIQAPEIDIEDTYFEDPCEIPTIELNMAEFTQNLKKYVKNN 1568
Query: 730 LELQEGDMSKALVALTAGAASIPAPKLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDP 789
+EL + ++S ALVALT+ AASIP PKLKNVSRLRTEHQVYELPDSHPLL G++KREPDDP
Sbjct: 1569 MELHQVEISNALVALTSEAASIPVPKLKNVSRLRTEHQVYELPDSHPLLEGLDKREPDDP 1628
Query: 790 GRYLLAIWTPGETANSIQPPESRCSSQEHGKMCDEKTCF 828
YLLAIWTPGETANS QPPE++C+SQE GK+C+ +T F
Sbjct: 1629 CSYLLAIWTPGETANSFQPPETQCNSQESGKLCENETMF 1667
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 20 SSAFMSLAANFPLNSKQKPCHGEEITSVI-EEPAEYVLDPEDTIEWKEKMSHQPVCDQGS 78
SSAFMSLAA+FPL +K E T++I EEP DP +I W E +Q Q S
Sbjct: 921 SSAFMSLAAHFPLKTKSSTQKHEGRTAIIIEEPEACATDPIVSIRWHEDQENQSTRCQDS 980
Query: 79 MTLHGSESSEEREVVSSNNSLESSTSVVSSINES 112
+H + S+EE+ VSS+ S E+ST + S S
Sbjct: 981 WRVHNTYSNEEKTAVSSSESSENSTHCIKSAEHS 1014
>gi|240255311|ref|NP_187612.5| protein demeter-like 2 [Arabidopsis thaliana]
gi|378405159|sp|Q9SR66.2|DML2_ARATH RecName: Full=DEMETER-like protein 2
gi|332641327|gb|AEE74848.1| protein demeter-like 2 [Arabidopsis thaliana]
Length = 1332
Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/547 (61%), Positives = 402/547 (73%), Gaps = 27/547 (4%)
Query: 410 KQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGR 469
++ DWDSLR++ E+ G K+ER E T D++DW+A+RC DV+KIAN I +RGMNNMLA R
Sbjct: 785 QKKSVDWDSLRKEAESGGRKRERTERTMDTVDWDALRCTDVHKIANIIIKRGMNNMLAER 844
Query: 470 IKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDT 529
IK FLNRLV+ HGS+DLEWLRDVPPDKAKEYLLS GLGLKSVECVRLL+LH +AFPVDT
Sbjct: 845 IKAFLNRLVKKHGSIDLEWLRDVPPDKAKEYLLSINGLGLKSVECVRLLSLHQIAFPVDT 904
Query: 530 NVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMIT 589
NVGRIAVRLGWVPLQPLP+ LQ+HLLELYPVLES+QKYLWPRLCKLDQ+TLYELHY MIT
Sbjct: 905 NVGRIAVRLGWVPLQPLPDELQMHLLELYPVLESVQKYLWPRLCKLDQKTLYELHYHMIT 964
Query: 590 FGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANENRTNTQNPAMM 649
FGKVFCTK KPNCNACPM+ ECRH++SA AS+RLALP PEE S + ++ ++
Sbjct: 965 FGKVFCTKVKPNCNACPMKAECRHYSSARASARLALPEPEESDRTSVMIHERRSKRKPVV 1024
Query: 650 INQLP-LPLTHATDLPVGKLEIAVNNCEPIIEEPATPEPERVQVSENDIED--------T 700
+N P L L + + + NCEPIIEEPA+PEPE + E+DIED
Sbjct: 1025 VNFRPSLFLYQEKEQEAQRSQ----NCEPIIEEPASPEPEYI---EHDIEDYPRDKNNVG 1077
Query: 701 FCEDPEE----IPTIKLNMKEFTQTLQNYMQENLELQEGDMSKALVALTAGAASIPAPKL 756
EDP E IPTI LN + T + + +E S LV L+ AA+IP KL
Sbjct: 1078 TSEDPWENKDVIPTIILNKEAGTS------HDLVVNKEAGTSHDLVVLSTYAAAIPRRKL 1131
Query: 757 KNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQ 816
K +LRTEH V+ELPD H +L G E+RE +D YLLAIWTPGET NSIQPP+ RC+
Sbjct: 1132 KIKEKLRTEHHVFELPDHHSILEGFERREAEDIVPYLLAIWTPGETVNSIQPPKQRCALF 1191
Query: 817 E-HGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDS 875
E + +C+E CF CN RE E Q VRGTILIPCRTAMRG FPLNGTYFQ NEVFADHDS
Sbjct: 1192 ESNNTLCNENKCFQCNKTREEESQTVRGTILIPCRTAMRGGFPLNGTYFQTNEVFADHDS 1251
Query: 876 SLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPR 935
S+ PI+VP E +W+L RR Y G+S+ SI KGL+ E I++ F GYVCVRGFD+++R P+
Sbjct: 1252 SINPIDVPTELIWDLKRRVAYLGSSVSSICKGLSVEAIKYNFQEGYVCVRGFDRENRKPK 1311
Query: 936 PLMARLH 942
L+ RLH
Sbjct: 1312 SLVKRLH 1318
>gi|138996988|dbj|BAF52856.1| repressor of silencing 2a [Nicotiana tabacum]
Length = 1673
Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/458 (71%), Positives = 381/458 (83%), Gaps = 12/458 (2%)
Query: 380 QNKYDHSFSKELNGIDDATSKSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDS 439
+N DH+ SK ++ ++D SK+K ++ KEK+N DWDSLR + +ANG K+E+ +T DS
Sbjct: 1213 KNVSDHACSK-VDSVNDNPSKAKKGQLGKEKEN-IDWDSLRLEAQANGKKREKTANTLDS 1270
Query: 440 LDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKE 499
LDWEAVRCA+VN+IA+TI+ERGMNN LA RIK+FLNR+V +HGS+DLEWLRDVPPDKAKE
Sbjct: 1271 LDWEAVRCANVNEIAHTIRERGMNNKLAERIKNFLNRIVSEHGSIDLEWLRDVPPDKAKE 1330
Query: 500 YLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
YLLS RGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP
Sbjct: 1331 YLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 1390
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFA 619
+LESIQKYLWPRLCKLDQRTLYELHY MITFGKVFCTKSKPNCNACP+RGECRHFASAFA
Sbjct: 1391 ILESIQKYLWPRLCKLDQRTLYELHYHMITFGKVFCTKSKPNCNACPLRGECRHFASAFA 1450
Query: 620 SSRLALPGPEEKAIVSANENRTNTQNPAMMINQLPLPLTHATDLPVGKLEIAVNNC---- 675
S+RLALP PEEK+IVSA EN+ + NP LPLPL PV ++ +N+
Sbjct: 1451 SARLALPAPEEKSIVSATENKASNNNPRENFTHLPLPLPPGNQQPVEHQKL-INSAPIIE 1509
Query: 676 -----EPIIEEPATPEPERVQVSENDIEDTFCEDPEEIPTIKLNMKEFTQTLQNYMQENL 730
EPI+E PATPE E++Q E DIEDT+ EDP EIPTI+LNM EFTQ L+ Y++ N+
Sbjct: 1510 VPATPEPIVELPATPEQEQIQAPEIDIEDTYFEDPCEIPTIELNMAEFTQNLKKYVKNNM 1569
Query: 731 ELQEGDMSKALVALTAGAASIPAPKLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPG 790
EL + ++S ALVALT+ AASIP PKLKNVSRLRTEHQVYELPDSHPLL G++KREPDDP
Sbjct: 1570 ELHQVEISNALVALTSEAASIPVPKLKNVSRLRTEHQVYELPDSHPLLEGLDKREPDDPC 1629
Query: 791 RYLLAIWTPGETANSIQPPESRCSSQEHGKMCDEKTCF 828
YLLAIWTPGETANS QPPE++C+SQE GK+C+ +T F
Sbjct: 1630 SYLLAIWTPGETANSFQPPETQCNSQESGKLCENETMF 1667
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 20 SSAFMSLAANFPLNSKQKPCHGEEITSVI-EEPAEYVLDPEDTIEWKEKMSHQPVCDQGS 78
SSAFMSLAA+FPL +K E T++I EEP DP +I W E +Q Q S
Sbjct: 921 SSAFMSLAAHFPLKTKSSTQKHEGRTAIIIEEPEACATDPIVSIRWHEDQENQSTRCQDS 980
Query: 79 MTLHGSESSEEREVVSSNNSLESSTSVVSSINES 112
+H + S+EE+ SS+ S E+ST + S S
Sbjct: 981 WRVHNTYSNEEKTAASSSESSENSTHCIKSAEHS 1014
>gi|357129088|ref|XP_003566199.1| PREDICTED: uncharacterized protein LOC100844361 [Brachypodium
distachyon]
Length = 1546
Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/488 (65%), Positives = 377/488 (77%), Gaps = 13/488 (2%)
Query: 471 KDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTN 530
K FLNRLVRDHGS+DLEWLRD+PPD AK+YLLS RGLGLKSVECVRLLTLHHLAFPVDTN
Sbjct: 1041 KSFLNRLVRDHGSIDLEWLRDIPPDSAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTN 1100
Query: 531 VGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITF 590
VGRI VRLGWVP+QPLPESLQLHLLELYPVLE+IQKY+WPRLCKLDQ+TLYELHYQMITF
Sbjct: 1101 VGRICVRLGWVPIQPLPESLQLHLLELYPVLETIQKYIWPRLCKLDQQTLYELHYQMITF 1160
Query: 591 GKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANENRTNTQNPAMMI 650
GKVFCTKSKPNCNACPMR EC+HFASAFAS+RLALP P+EK++V ++ N+ + +N +
Sbjct: 1161 GKVFCTKSKPNCNACPMRSECKHFASAFASARLALPAPQEKSLVKSS-NQFSFENSGLPT 1219
Query: 651 NQLPLPLTHATDLP------VGKLEIAVNNCEPIIEEPATPEPERV-QVSENDIEDTFCE 703
T + LP G+ ++ EPI+EEPA+P E + ENDIED +
Sbjct: 1220 RNHAWNSTVLSVLPQLEGSTYGR-DVLATYSEPIVEEPASPREEECPETLENDIED-YDA 1277
Query: 704 DPEEIPTIKLNMKEFTQTLQNYMQE-NLELQEGDMSKALVALTAGAASIPAPKLKNVSRL 762
D EIPTIKLNM+ F Q L+N ++E N +LQ D++KALVA++ AASIP PKLKNV RL
Sbjct: 1278 DNGEIPTIKLNMEAFAQNLENCIKESNKDLQSDDIAKALVAISTEAASIPVPKLKNVRRL 1337
Query: 763 RTEHQVYELPDSHPLLRGME--KREPDDPGRYLLAIWTPGETANSIQPPESRCSSQEHGK 820
RTEH VYELPDSH L++ +E +REPDDP YLL IW + + P+S C SQ
Sbjct: 1338 RTEHYVYELPDSHSLVQQLELARREPDDPSPYLLTIWMEDDIKEMSKAPKSCCDSQMEAD 1397
Query: 821 MCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPI 880
C+ C C RE++ + VRGTIL+PCRTAM+GSFPLNGTYFQVNEVFADH SS PI
Sbjct: 1398 FCNNGKCHYCVPERENQSRYVRGTILVPCRTAMKGSFPLNGTYFQVNEVFADHKSSHDPI 1457
Query: 881 NVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMAR 940
+V RE LW+L RR VYFGTS+ +IFKGLTTE +Q CFWRG+VCVRGFD +++APRPL
Sbjct: 1458 HVAREQLWSLQRRMVYFGTSVSTIFKGLTTEEVQQCFWRGFVCVRGFDMETKAPRPLCPH 1517
Query: 941 LHFPASKL 948
LH ASKL
Sbjct: 1518 LHLAASKL 1525
>gi|224100667|ref|XP_002311968.1| predicted protein [Populus trichocarpa]
gi|222851788|gb|EEE89335.1| predicted protein [Populus trichocarpa]
Length = 411
Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/413 (74%), Positives = 354/413 (85%), Gaps = 4/413 (0%)
Query: 538 LGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTK 597
LGWVPLQPLPESLQLHLLELYP+LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTK
Sbjct: 1 LGWVPLQPLPESLQLHLLELYPILESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTK 60
Query: 598 SKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANENRTNTQNPAMMINQLPLPL 657
S+PNCNACPMR ECRHFASAF S+RLALPGPE K I ++ ++P+++IN P+PL
Sbjct: 61 SRPNCNACPMRAECRHFASAFTSARLALPGPETKDITTSTVPFMPEKSPSIVIN--PMPL 118
Query: 658 THATDLPVGKLEIAVNNCEPIIEEPATPEPERVQVSENDIEDTFCEDPEEIPTIKLNMKE 717
D + + +CEPIIEEP TP+ E+ +++E DIED F EDP+EIPTIKLNM+E
Sbjct: 119 LPPEDNQHKSVGFDIGSCEPIIEEPVTPDQEQTELAETDIED-FGEDPDEIPTIKLNMEE 177
Query: 718 FTQTLQNYMQENLELQEGDMSKALVALTAGAASIPAPKLKNVSRLRTEHQVYELPDSHPL 777
FT+ LQNY+ N+ELQE DMSKALVAL A SIP PKLKNVSRLRTEHQVYELPDSHPL
Sbjct: 178 FTENLQNYIHSNMELQEYDMSKALVALDPNA-SIPTPKLKNVSRLRTEHQVYELPDSHPL 236
Query: 778 LRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQEHGKMCDEKTCFSCNSVRESE 837
L+GM+KREPDDP YLLAIWTPGETANSI+PPE +C S+E K+C+EK CFSCNS+RE+
Sbjct: 237 LQGMDKREPDDPSPYLLAIWTPGETANSIEPPEQQCQSREPNKLCNEKICFSCNSIREAN 296
Query: 838 FQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYF 897
Q VRGT+LIPCRTAMRGSFPLNGTYFQVNE+FADH+SSL PI+VPR +WNLPRR VYF
Sbjct: 297 SQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEMFADHESSLNPIDVPRSLIWNLPRRIVYF 356
Query: 898 GTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMARLHFPASKLNK 950
GTS+PSIFKGL+TEG+QHCFW+G+VCVRGFDQK+RAPRPL ARLHFP S+L K
Sbjct: 357 GTSVPSIFKGLSTEGVQHCFWKGFVCVRGFDQKTRAPRPLKARLHFPVSRLVK 409
>gi|297734851|emb|CBI17085.3| unnamed protein product [Vitis vinifera]
Length = 906
Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/564 (57%), Positives = 407/564 (72%), Gaps = 22/564 (3%)
Query: 398 TSKSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTI 457
+++ K + + ++ + FDWDSLRR +N G+K R +DSLDWEAVR A+V +A I
Sbjct: 358 SNEGKRGKTNDKEDHSFDWDSLRR-FYSNRGRKSRIHDARDSLDWEAVRDANVTHVAKAI 416
Query: 458 KERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRL 517
RGMNN+LA RIKDFL+RLVRDHG +DLEWLRDVPP+KAK+YLLS RGLGLKSVECVRL
Sbjct: 417 STRGMNNVLAARIKDFLDRLVRDHGKLDLEWLRDVPPEKAKDYLLSIRGLGLKSVECVRL 476
Query: 518 LTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQ 577
LTLHH AFPVDTNVGRI VRLGWVPLQPLP + LH L+ YP +++IQKYLWPRLC LDQ
Sbjct: 477 LTLHHHAFPVDTNVGRITVRLGWVPLQPLPSDVYLHSLDQYPPMDTIQKYLWPRLCTLDQ 536
Query: 578 RTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAI---V 634
+TLYELHYQMITFGKVFCTK P C+ACP+RG+C+H+AS AS + + P+E+ I V
Sbjct: 537 KTLYELHYQMITFGKVFCTKKNPYCDACPLRGDCKHYASVVASRFVCISAPKEEGIPNYV 596
Query: 635 SANENRTNTQNPAMMINQLPL-PLTHATDLPVGKLEIAVNNCEPIIEEPATPEPERVQVS 693
+N ++ N +PL ++ D P + NNCEPIIE P +P P +
Sbjct: 597 GSN---------LVVDNHVPLVSVSILEDGPNYQPGGTYNNCEPIIEMPTSPRP---KSE 644
Query: 694 ENDIEDTFCEDPEEIPTIKLNMKEFTQTLQNYMQENLELQEGDM-SKALVALTAGAASIP 752
E DIED ED +EIPTI+L+ +EF +QN QE D S+ALV++ A SIP
Sbjct: 645 EKDIEDFCDEDFDEIPTIRLD-EEFGAGIQNCPHMYPTPQEEDHGSQALVSV---ATSIP 700
Query: 753 APKLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESR 812
KLKN+SRLRTEH VYELPDSH LL + RE DP +L AIW+PGETA+S + P+ R
Sbjct: 701 TRKLKNISRLRTEHHVYELPDSHHLLTEVSLRESCDPCPFLFAIWSPGETADSFEQPQRR 760
Query: 813 CSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFAD 872
C+ + G++C ++TC CN+ RE + QI+RGT+LIPCRTAMRGSFPLNGTYFQVNEVFAD
Sbjct: 761 CNLEGSGELCKDETCSFCNATREQDSQIIRGTLLIPCRTAMRGSFPLNGTYFQVNEVFAD 820
Query: 873 HDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSR 932
+SS PI V R +WNLPRR YFGTS SIF+GL+ IQ+CFW+G++CVRGF++K+R
Sbjct: 821 DESSRNPIIVRRTEIWNLPRRMAYFGTSATSIFRGLSIMEIQNCFWQGFICVRGFNRKTR 880
Query: 933 APRPLMARLHFPASKLNKVPGKAD 956
AP+PL+ RLH S + K D
Sbjct: 881 APKPLVRRLHISPSHMGKAKAGDD 904
>gi|359479390|ref|XP_002270885.2| PREDICTED: DEMETER-like protein 3-like [Vitis vinifera]
Length = 1372
Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/599 (56%), Positives = 421/599 (70%), Gaps = 30/599 (5%)
Query: 375 SSVSDQ-NKYDHSFSKELNGIDDATSKSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERP 433
+S S+Q N+ + +K LN +++ K + + ++ + FDWDSLRR +N G+K R
Sbjct: 785 TSYSEQRNEMGETENKNLNN----SNEGKRGKTNDKEDHSFDWDSLRR-FYSNRGRKSRI 839
Query: 434 EHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVP 493
+DSLDWEAVR A+V +A I RGMNN+LA RIKDFL+RLVRDHG +DLEWLRDVP
Sbjct: 840 HDARDSLDWEAVRDANVTHVAKAISTRGMNNVLAARIKDFLDRLVRDHGKLDLEWLRDVP 899
Query: 494 PDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 553
P+KAK+YLLS RGLGLKSVECVRLLTLHH AFPVDTNVGRI VRLGWVPLQPLP + LH
Sbjct: 900 PEKAKDYLLSIRGLGLKSVECVRLLTLHHHAFPVDTNVGRITVRLGWVPLQPLPSDVYLH 959
Query: 554 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
L+ YP +++IQKYLWPRLC LDQ+TLYELHYQMITFGKVFCTK P C+ACP+RG+C+H
Sbjct: 960 SLDQYPPMDTIQKYLWPRLCTLDQKTLYELHYQMITFGKVFCTKKNPYCDACPLRGDCKH 1019
Query: 614 FASAFAS----------SRLALPGP-EEKAIVSANENRTNTQNPAMMI-NQLPL-PLTHA 660
+AS AS +L L P E + E N +++ N +PL ++
Sbjct: 1020 YASVVASRLPLIKNGGDGQLDLASPIENQPAAPKEEGIPNYVGSNLVVDNHVPLVSVSIL 1079
Query: 661 TDLPVGKLEIAVNNCEPIIEEPATPEPERVQVSENDIEDTFCEDPEEIPTIKLNMKEFTQ 720
D P + NNCEPIIE P +P P + E DIED ED +EIPTI+L+ +EF
Sbjct: 1080 EDGPNYQPGGTYNNCEPIIEMPTSPRP---KSEEKDIEDFCDEDFDEIPTIRLD-EEFGA 1135
Query: 721 TLQNYMQENLELQEGDM-SKALVALTAGAASIPAPKLKNVSRLRTEHQVYELPDSHPLL- 778
+QN QE D S+ALV++ A SIP KLKN+SRLRTEH VYELPDSH LL
Sbjct: 1136 GIQNCPHMYPTPQEEDHGSQALVSV---ATSIPTRKLKNISRLRTEHHVYELPDSHHLLT 1192
Query: 779 -RGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQEHGKMCDEKTCFSCNSVRESE 837
RGM +RE DP +L AIW+PGETA+S + P+ RC+ + G++C ++TC CN+ RE +
Sbjct: 1193 ERGM-RRESCDPCPFLFAIWSPGETADSFEQPQRRCNLEGSGELCKDETCSFCNATREQD 1251
Query: 838 FQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYF 897
QI+RGT+LIPCRTAMRGSFPLNGTYFQVNEVFAD +SS PI V R +WNLPRR YF
Sbjct: 1252 SQIIRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADDESSRNPIIVRRTEIWNLPRRMAYF 1311
Query: 898 GTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMARLHFPASKLNKVPGKAD 956
GTS SIF+GL+ IQ+CFW+G++CVRGF++K+RAP+PL+ RLH S + K D
Sbjct: 1312 GTSATSIFRGLSIMEIQNCFWQGFICVRGFNRKTRAPKPLVRRLHISPSHMGKAKAGDD 1370
>gi|115464171|ref|NP_001055685.1| Os05g0445900 [Oryza sativa Japonica Group]
gi|113579236|dbj|BAF17599.1| Os05g0445900, partial [Oryza sativa Japonica Group]
Length = 473
Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/472 (67%), Positives = 376/472 (79%), Gaps = 10/472 (2%)
Query: 489 LRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPE 548
LRDVPPD AK+YLLS RGLGLKSVECVRLLTLHHLAFPVDTNVGRI VRLGWVP+QPLPE
Sbjct: 1 LRDVPPDSAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRICVRLGWVPIQPLPE 60
Query: 549 SLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMR 608
SLQLHLLELYPVLE+IQKYLWPRLCKLDQ+TLYELHYQMITFGKVFCTKSKPNCNACPMR
Sbjct: 61 SLQLHLLELYPVLETIQKYLWPRLCKLDQQTLYELHYQMITFGKVFCTKSKPNCNACPMR 120
Query: 609 GECRHFASAFASSRLALPGPEEKAIVSANENRTNTQNPAMMI-NQLPLPLTHATDLPVGK 667
ECRHFASAFAS+RLALP P++K +V+ + N+ N M N PLP + +
Sbjct: 121 SECRHFASAFASARLALPSPQDKRLVNLS-NQFAFHNGTMPTPNSTPLPQLEGS---IHA 176
Query: 668 LEIAVNNCEPIIEEPATP-EPERVQVSENDIEDTFCEDPEEIPTIKLNMKEFTQTLQNYM 726
++ NN PIIEEPA+P E E ++ ENDIED F ED +EIP IKLNM+ F+Q L+N +
Sbjct: 177 RDVHANNTNPIIEEPASPREEECRELLENDIED-FDEDTDEIPIIKLNMEAFSQNLENCI 235
Query: 727 QE-NLELQEGDMSKALVALTAGAASIPAPKLKNVSRLRTEHQVYELPDSHPLLR--GMEK 783
+E N + Q D++KALVA++ AASIP PKLKNV RLRTEH VYELPDSHPL++ +++
Sbjct: 236 KESNKDFQSDDITKALVAISNEAASIPVPKLKNVHRLRTEHYVYELPDSHPLMQQLALDQ 295
Query: 784 REPDDPGRYLLAIWTPGETANSIQPPESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRG 843
REPDDP YLLAIWTP E ++ + P+ C+ Q G +C + C +C S RE++++ VRG
Sbjct: 296 REPDDPSPYLLAIWTPDELKDTREAPKPCCNPQTEGGLCSNEMCHNCVSERENQYRYVRG 355
Query: 844 TILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPS 903
T+L+PCRTAMRGSFPLNGTYFQVNEVFADH SS PIN+PRE LWNL RR VYFGTS+P+
Sbjct: 356 TVLVPCRTAMRGSFPLNGTYFQVNEVFADHSSSHNPINIPREQLWNLHRRMVYFGTSVPT 415
Query: 904 IFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMARLHFPASKLNKVPGKA 955
IFKGLTTE IQHCFWRG+VCVRGF+ ++RAPRPL H ASKL + KA
Sbjct: 416 IFKGLTTEEIQHCFWRGFVCVRGFNMETRAPRPLCPHFHLAASKLRRSSKKA 467
>gi|26451047|dbj|BAC42629.1| unknown protein [Arabidopsis thaliana]
gi|28950995|gb|AAO63421.1| At5g04570 [Arabidopsis thaliana]
Length = 416
Score = 637 bits (1643), Expect = e-180, Method: Compositional matrix adjust.
Identities = 299/413 (72%), Positives = 346/413 (83%), Gaps = 2/413 (0%)
Query: 538 LGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTK 597
+GWVPLQPLPESLQLHLLELYPVLESIQK+LWPRLCKLDQRTLYELHYQ+ITFGKVFCTK
Sbjct: 1 MGWVPLQPLPESLQLHLLELYPVLESIQKFLWPRLCKLDQRTLYELHYQLITFGKVFCTK 60
Query: 598 SKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANENRTNTQNPAMMINQLPLPL 657
S+PNCNACPMRGECRHFASA+AS+RLALP PEE+++ SA P + I + LPL
Sbjct: 61 SRPNCNACPMRGECRHFASAYASARLALPAPEERSLTSATIPVPPESYPPVAIPMIELPL 120
Query: 658 THATDLPVGKLEIAVNNCEPIIEEPATPEPERVQVSENDIEDTFC-EDPEEIPTIKLNMK 716
L G NCEPIIEEPA+P E +++E+DIED + EDP+EIPTIKLN++
Sbjct: 121 PLEKSLASGAPS-NRENCEPIIEEPASPGQECTEITESDIEDAYYNEDPDEIPTIKLNIE 179
Query: 717 EFTQTLQNYMQENLELQEGDMSKALVALTAGAASIPAPKLKNVSRLRTEHQVYELPDSHP 776
+F TL+ +M+ N+ELQEGDMSKALVAL SIP PKLKN+SRLRTEHQVYELPDSH
Sbjct: 180 QFGMTLREHMERNMELQEGDMSKALVALHPTTTSIPTPKLKNISRLRTEHQVYELPDSHR 239
Query: 777 LLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQEHGKMCDEKTCFSCNSVRES 836
LL GM+KREPDDP YLLAIWTPGETANS QPPE +C + GKMC ++TC CNS+RE+
Sbjct: 240 LLDGMDKREPDDPSPYLLAIWTPGETANSAQPPEQKCGGKASGKMCFDETCSECNSLREA 299
Query: 837 EFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWNLPRRTVY 896
Q VRGT+LIPCRTAMRGSFPLNGTYFQVNE+FADH+SSLKPI+VPR+W+W+LPRRTVY
Sbjct: 300 NSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNELFADHESSLKPIDVPRDWIWDLPRRTVY 359
Query: 897 FGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMARLHFPASKLN 949
FGTS+ SIF+GL+TE IQ CFW+G+VCVRGF+QK+RAPRPLMARLHFPASKL
Sbjct: 360 FGTSVTSIFRGLSTEQIQFCFWKGFVCVRGFEQKTRAPRPLMARLHFPASKLK 412
>gi|449456184|ref|XP_004145830.1| PREDICTED: uncharacterized protein LOC101216331 [Cucumis sativus]
Length = 1810
Score = 634 bits (1634), Expect = e-179, Method: Compositional matrix adjust.
Identities = 302/531 (56%), Positives = 378/531 (71%), Gaps = 26/531 (4%)
Query: 416 WDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLN 475
WDSLRR+ + + R DS+DWEAVR A+ KIA+ IKERG +N++AGRIK FL+
Sbjct: 1272 WDSLRRK---HPPCEPRSRDHMDSVDWEAVRFAEPTKIADAIKERGQHNIIAGRIKQFLD 1328
Query: 476 RLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIA 535
R R HG +DLEWLR PP KEYLL GLGLKSVEC+RLL L +AFPVD NVGRIA
Sbjct: 1329 RTARLHGCIDLEWLRHAPPKDVKEYLLEIDGLGLKSVECIRLLALQQVAFPVDINVGRIA 1388
Query: 536 VRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFC 595
VRLGWVPL+PLPE +Q+HLLE +P+++SIQKYLWPRL LDQRTLYELHYQ+ITFGKVFC
Sbjct: 1389 VRLGWVPLEPLPEEVQMHLLETFPMMDSIQKYLWPRLSMLDQRTLYELHYQLITFGKVFC 1448
Query: 596 TKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANENRT----NTQNPAMMIN 651
TK KPNCNACP+R +CRH+ASA+AS+RLALPG +EK IVS + NT+ + I+
Sbjct: 1449 TKRKPNCNACPLRADCRHYASAYASARLALPGLQEKGIVSTMSSEKSFEGNTRASLLHID 1508
Query: 652 QLPLPLTHATDLPVGKLEIAVNNCEPIIEEPATPEPERVQVSENDIEDTFCEDPEEIPTI 711
P +TD NCEPI+E P +PEP + DIED + D +++P I
Sbjct: 1509 ANPFSAECSTD-----------NCEPIVEAPPSPEPAHDESQLTDIEDLYEYDSDDVPII 1557
Query: 712 KLNMKEFTQTLQNYMQENLELQEGDMSKALVALTAGAASIPAPKLKNVSRLRTEHQVYEL 771
+L+ +FT T N + ++ ALV L ASIP KLK++ RLRTEHQVYEL
Sbjct: 1558 RLSSGQFTTTSLNCVDNSI--------GALVPLHPRVASIPMRKLKHIERLRTEHQVYEL 1609
Query: 772 PDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQEHGKMCDEKTCFSCN 831
PD HPLL +E+R+P+DP YLL I +PGET +S +PP + C +E G++C E +C SCN
Sbjct: 1610 PDIHPLLSKLERRDPNDPCPYLLCILSPGETVDSCEPPNTICMYREIGEICSEGSCSSCN 1669
Query: 832 SVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWNLP 891
VR+ V GTILIPCRTAMRG FPLNGTYFQVNEVFAD ++S PI +PREW+W+LP
Sbjct: 1670 IVRQQNSGAVHGTILIPCRTAMRGKFPLNGTYFQVNEVFADDETSKNPIQIPREWIWDLP 1729
Query: 892 RRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMARLH 942
RR YFGTS +IF+GL E IQ+CF +G++CVRGF++++R P+ L RLH
Sbjct: 1730 RRIAYFGTSTTTIFRGLEKEDIQYCFQKGFICVRGFNRRTRTPKRLTERLH 1780
>gi|449530536|ref|XP_004172250.1| PREDICTED: transcriptional activator DEMETER-like [Cucumis sativus]
Length = 1176
Score = 632 bits (1629), Expect = e-178, Method: Compositional matrix adjust.
Identities = 303/531 (57%), Positives = 379/531 (71%), Gaps = 26/531 (4%)
Query: 416 WDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLN 475
WDSLRR+ + + R DS+DWEAVR A+ KIA+ IKERG +N++AGRIK FL+
Sbjct: 638 WDSLRRK---HPPCEPRSRDHMDSVDWEAVRFAEPTKIADAIKERGQHNIIAGRIKQFLD 694
Query: 476 RLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIA 535
R R HG +DLEWLR PP KEYLL GLGLKSVEC+RLL L +AFPVD NVGRIA
Sbjct: 695 RTARLHGCIDLEWLRHAPPKDVKEYLLEIDGLGLKSVECIRLLALQQVAFPVDINVGRIA 754
Query: 536 VRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFC 595
VRLGWVPL+PLPE +Q+HLLE +P+++SIQKYLWPRL LDQRTLYELHYQ+ITFGKVFC
Sbjct: 755 VRLGWVPLEPLPEEVQMHLLETFPMMDSIQKYLWPRLSMLDQRTLYELHYQLITFGKVFC 814
Query: 596 TKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANEN----RTNTQNPAMMIN 651
TK KPNCNACP+R +CRH+ASA+AS+RLALPG +EK IVS + NT+ + I+
Sbjct: 815 TKRKPNCNACPLRADCRHYASAYASARLALPGLQEKGIVSTMSSGKSFEGNTRASLLHID 874
Query: 652 QLPLPLTHATDLPVGKLEIAVNNCEPIIEEPATPEPERVQVSENDIEDTFCEDPEEIPTI 711
P +TD NCEPI+E P +PEP + DIED + D +++P I
Sbjct: 875 ANPFSAECSTD-----------NCEPIVEAPPSPEPAHDESQLTDIEDLYEYDSDDVPII 923
Query: 712 KLNMKEFTQTLQNYMQENLELQEGDMSKALVALTAGAASIPAPKLKNVSRLRTEHQVYEL 771
+L+ +FT T +L +G + ALV L ASIP KLK++ RLRTEHQVYEL
Sbjct: 924 RLSSGQFTTT-------SLNCVDGSIG-ALVPLHPRVASIPMRKLKHIERLRTEHQVYEL 975
Query: 772 PDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQEHGKMCDEKTCFSCN 831
PD HPLL +E+R+P+DP YLL I +PGET +S +PP + C +E G++C E +C SCN
Sbjct: 976 PDIHPLLSKLERRDPNDPCPYLLCILSPGETVDSCEPPNTICMYREIGEICSEGSCSSCN 1035
Query: 832 SVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWNLP 891
VR+ V GTILIPCRTAMRG FPLNGTYFQVNEVFAD ++S PI +PREW+W+LP
Sbjct: 1036 IVRQQNSGAVHGTILIPCRTAMRGKFPLNGTYFQVNEVFADDETSKNPIQIPREWIWDLP 1095
Query: 892 RRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMARLH 942
RR YFGTS +IF+GL E IQ+CF +G++CVRGF++++R P+ L RLH
Sbjct: 1096 RRIAYFGTSTTTIFRGLEKEDIQYCFQKGFICVRGFNRRTRTPKRLTERLH 1146
>gi|125552526|gb|EAY98235.1| hypothetical protein OsI_20146 [Oryza sativa Indica Group]
Length = 1802
Score = 629 bits (1622), Expect = e-177, Method: Compositional matrix adjust.
Identities = 331/603 (54%), Positives = 400/603 (66%), Gaps = 63/603 (10%)
Query: 359 IESHNALYNRENTQLKSSVSDQNKYDHSFSKELNGIDDATSKS----KSTRVSKEKQNDF 414
+ H +LY +++ + S NG+ D +++ K SK+ +F
Sbjct: 1241 FQGHESLYATGGAIPETATKADDSTLKSGFASFNGLPDTAAQASKPKKPRTTSKKNSENF 1300
Query: 415 DWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFL 474
DWD LRRQ N KER +DS+DWEAVRCADV +I++ I+ERGMNN+LA RI+ FL
Sbjct: 1301 DWDKLRRQACGNYQMKERIFDRRDSVDWEAVRCADVQRISHAIRERGMNNVLAERIQKFL 1360
Query: 475 NRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRI 534
NRLV DHGS+DLEWLRDVPPD AK+YLLS RGLGLKSVECVRLLTLHHLAFPVDTNVGRI
Sbjct: 1361 NRLVTDHGSIDLEWLRDVPPDSAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRI 1420
Query: 535 AVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVF 594
VRLGWVP+QPLPESLQLHLLELYPVLE+IQKYLWPRLCKLDQ+TLYELHYQMITFGK
Sbjct: 1421 CVRLGWVPIQPLPESLQLHLLELYPVLETIQKYLWPRLCKLDQQTLYELHYQMITFGK-- 1478
Query: 595 CTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANENRTNTQNPAMMINQLP 654
C C ++F+S + V E + QN M
Sbjct: 1479 -------CKTC----------TSFSSGQK----------VGEYEQSFDFQNGTM------ 1505
Query: 655 LPLTHATDL-----PVGKLEIAVNNCEPIIEEPATP-EPERVQVSENDIEDTFCEDPEEI 708
P H+T L + ++ NN PIIEEPA+P E E ++ ENDIED F ED +EI
Sbjct: 1506 -PTPHSTPLLQLEGSIHARDVHANNTNPIIEEPASPREEECRELLENDIED-FDEDTDEI 1563
Query: 709 PTIKLNMKEFTQTLQNYMQE-NLELQEGDMSKALVALTAGAASIPAPKLKNVSRLRTEHQ 767
PTIKLNM+ F Q L+N ++E N + Q D++KALVA++ AASIP PKLKNV RLRTEH
Sbjct: 1564 PTIKLNMEAFAQNLENCIKESNKDFQSDDITKALVAISNEAASIPVPKLKNVHRLRTEHY 1623
Query: 768 VYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQEHGKMCDEKTC 827
V+ LR P E ++ + P+ C+ Q G +C + C
Sbjct: 1624 VF-----CSQLRTSRFTSPH----------ATDELKDTREAPKPCCNPQTEGGLCSNEMC 1668
Query: 828 FSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWL 887
+C S RE++++ VRGT+L+PCRTAMRGSFPLNGTYFQVNEVFADH SS PIN+PRE L
Sbjct: 1669 HNCVSERENQYRYVRGTVLVPCRTAMRGSFPLNGTYFQVNEVFADHSSSHNPINIPREQL 1728
Query: 888 WNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMARLHFPASK 947
WNL RR VYFGTS+P+IFKGLTTE IQHCFWRG+VCVRGFD ++RAPRPL H ASK
Sbjct: 1729 WNLHRRMVYFGTSVPTIFKGLTTEEIQHCFWRGFVCVRGFDMETRAPRPLCPHFHLAASK 1788
Query: 948 LNK 950
L +
Sbjct: 1789 LRR 1791
>gi|138996994|dbj|BAF52858.1| repressor of silencing 3 [Nicotiana tabacum]
Length = 1662
Score = 605 bits (1560), Expect = e-170, Method: Compositional matrix adjust.
Identities = 310/541 (57%), Positives = 385/541 (71%), Gaps = 59/541 (10%)
Query: 324 ESELFGDSRFAMEPPAHAQKNDLNLPKI------SSGSIDAIESHNALYNRENTQLKSSV 377
++E ++ +E + + N+P++ S +I+ E + +++ + ++
Sbjct: 1164 DTETVNNAEVNVELQFQTEDRNCNVPQVPEAPTSSETNIEVTERASIVFDSCKYEQRAVE 1223
Query: 378 SD-QNKYDHSFSKELNGIDDATSKSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHT 436
S+ +N DH+ SK ++ +++ SK+K ++ KEK+N DWDSLR + +ANG K+ER +T
Sbjct: 1224 SNLKNVSDHACSK-VDSVNENPSKAKKGQLGKEKEN-IDWDSLRLEAQANGKKRERTANT 1281
Query: 437 KDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDK 496
DSLDWEAVRCA+VN+IA+TIKERGMNN LA RIK+FLNR+V +HGS+DLEWLRDVPPDK
Sbjct: 1282 MDSLDWEAVRCANVNEIAHTIKERGMNNKLAERIKNFLNRIVSEHGSIDLEWLRDVPPDK 1341
Query: 497 AKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLE 556
AKEYLLS RGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLE
Sbjct: 1342 AKEYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLE 1401
Query: 557 LYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFAS 616
LYP+LESIQKYLWPRLCKLDQRT
Sbjct: 1402 LYPILESIQKYLWPRLCKLDQRTF------------------------------------ 1425
Query: 617 AFASSRLALPGPEEKAIVSANENRTNTQNPAMMINQLPLPLTHATDLPVGKLEIAVNNC- 675
+RLALP EEK+IVSA EN+ + NP LPLPL PV ++ +N+
Sbjct: 1426 ----ARLALPAQEEKSIVSATENKASNNNPREKFTHLPLPLPPGNQQPVEHQKL-INSAP 1480
Query: 676 --------EPIIEEPATPEPERVQVSENDIEDTFCEDPEEIPTIKLNMKEFTQTLQNYMQ 727
EPI+E PATPE E++Q E DIEDT+ EDP EIPTI++NM EFTQ L+ Y++
Sbjct: 1481 IIEVLATPEPIVELPATPEQEQMQAPEIDIEDTYYEDPCEIPTIEVNMAEFTQNLKKYVE 1540
Query: 728 ENLELQEGDMSKALVALTAGAASIPAPKLKNVSRLRTEHQVYELPDSHPLLRGMEKREPD 787
N+EL + +MS ALVALT+ AASIP PKLKNVSRLRTEHQVYELPDSHPLL G++KREPD
Sbjct: 1541 NNMELHQVEMSNALVALTSEAASIPVPKLKNVSRLRTEHQVYELPDSHPLLEGLDKREPD 1600
Query: 788 DPGRYLLAIWTPGETANSIQPPESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILI 847
DP YLLAIWTPGETANS QPPE++C+SQE GK+C+ +TC SCNS+RE+ Q VRGT+LI
Sbjct: 1601 DPCSYLLAIWTPGETANSFQPPETQCNSQESGKLCENETCSSCNSIREAHSQTVRGTLLI 1660
Query: 848 P 848
P
Sbjct: 1661 P 1661
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 55/94 (58%), Gaps = 1/94 (1%)
Query: 20 SSAFMSLAANFPLNSKQKPCHGEEITSVI-EEPAEYVLDPEDTIEWKEKMSHQPVCDQGS 78
SSAFMSLAA+FPL +K E T+VI EEP DP +I W E ++Q Q S
Sbjct: 935 SSAFMSLAAHFPLKTKSSTQKHEGRTAVIIEEPEVCATDPIVSIRWHEDQANQSSRCQDS 994
Query: 79 MTLHGSESSEEREVVSSNNSLESSTSVVSSINES 112
++ ++S+EE+ V+S+ S E+ST + S S
Sbjct: 995 WRVYNTDSNEEKTAVNSSESSENSTDCIKSAEHS 1028
>gi|297833776|ref|XP_002884770.1| hypothetical protein ARALYDRAFT_341139 [Arabidopsis lyrata subsp.
lyrata]
gi|297330610|gb|EFH61029.1| hypothetical protein ARALYDRAFT_341139 [Arabidopsis lyrata subsp.
lyrata]
Length = 1078
Score = 598 bits (1543), Expect = e-168, Method: Compositional matrix adjust.
Identities = 329/591 (55%), Positives = 399/591 (67%), Gaps = 68/591 (11%)
Query: 372 QLKSSVSDQNKYDHSFSKEL--NGIDDATSK--SKSTRVSKE-KQNDFDWDSLRRQVEAN 426
+L+S++ Q++ +++ ++++ N TSK KST +K K+ FDWDSLR+Q E+
Sbjct: 522 ELESTIQPQDQQENTRTEDVKKNRKKPTTSKLKKKSTEPAKSNKKKSFDWDSLRKQAESG 581
Query: 427 GGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDL 486
G K+ER E T D++DW+A+RC DVNKIAN I +RGMNNMLA RIK FLNRLVR HGS+DL
Sbjct: 582 GRKRERTERTMDTVDWDALRCTDVNKIANIIIKRGMNNMLAERIKAFLNRLVRKHGSIDL 641
Query: 487 EWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPL 546
EWLRD+ PD+AKEYLLS GLGLKSVECVRLL+LH +AFPVDTNVGRIAVRLGWVPLQPL
Sbjct: 642 EWLRDIHPDQAKEYLLSINGLGLKSVECVRLLSLHQIAFPVDTNVGRIAVRLGWVPLQPL 701
Query: 547 PESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACP 606
P+ LQ+HLLELYPVLES+QKYLWPRLCKLDQ+TLYELHY MITFGKVFCTK KPNCNACP
Sbjct: 702 PDELQMHLLELYPVLESVQKYLWPRLCKLDQKTLYELHYHMITFGKVFCTKVKPNCNACP 761
Query: 607 MRGECRHFASAFASSRLALPGPEE--KAIVSANENRTNTQNPAMMINQLP-LPLTHATDL 663
M+ ECRH+ASA AS+RLALP PEE + V +E R + ++N P L L +
Sbjct: 762 MKAECRHYASARASARLALPEPEESDRTTVMVHERRYKRK--PFVVNFRPSLFLFQEKEH 819
Query: 664 PVGKLEIAVNNCEPIIEEPATPEPERVQVSENDIEDT--------FCEDPEE----IPTI 711
+ + NCEPIIEEPA+PEPE + E DIE+ +DP E IPTI
Sbjct: 820 EAQRSQ----NCEPIIEEPASPEPEYI---ERDIEEYPWNNNNVGTSKDPWENKDVIPTI 872
Query: 712 KLNMKEFTQTLQNYMQENLELQEGDMSKALVALTAGAASIPAPKLKNVSRLRTEHQVYEL 771
LN + T L + +E S+ LV L+ AA+IP KLK +LRTEH VYEL
Sbjct: 873 MLNKEAGTSHL-------VVNKEAGTSQDLVVLSTYAAAIPRRKLKIKEKLRTEHNVYEL 925
Query: 772 PDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQEHGKMCDEKTCFSCN 831
P H +L G E+ E DD YLLAI TPGE
Sbjct: 926 PKYHSILEGFERHEDDDLVPYLLAICTPGE------------------------------ 955
Query: 832 SVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWNLP 891
E VRGTILIPCRTAMRG FPLNGTYFQ NEVFADH SS+ PI VP + +W+L
Sbjct: 956 --EEESHNTVRGTILIPCRTAMRGGFPLNGTYFQTNEVFADHGSSINPIEVPTQSIWDLR 1013
Query: 892 RRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMARLH 942
RR YFG+S+ SI KGL+ + I+ F GYVCVRGFD+++R P+ L+ RLH
Sbjct: 1014 RRIAYFGSSVSSICKGLSVKEIEDNFQEGYVCVRGFDRENRKPKSLVKRLH 1064
>gi|255573046|ref|XP_002527453.1| conserved hypothetical protein [Ricinus communis]
gi|223533188|gb|EEF34945.1| conserved hypothetical protein [Ricinus communis]
Length = 1712
Score = 597 bits (1539), Expect = e-168, Method: Compositional matrix adjust.
Identities = 310/564 (54%), Positives = 379/564 (67%), Gaps = 31/564 (5%)
Query: 401 SKSTR-VSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKE 459
+K T+ V KEK W+ L R+ + R DS+DWEAVR A +IA+ IK
Sbjct: 1161 TKGTKNVVKEKSY---WNDLGRKYS-----RPRSSAATDSIDWEAVRQAPETEIADAIKS 1212
Query: 460 RGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLT 519
RG +N++A +IK LNR++ HGS+DLEWLR P D K YLL GLGLKSVEC+RLLT
Sbjct: 1213 RGQHNIMARKIKKSLNRILDYHGSIDLEWLRHAPDDDVKVYLLEIEGLGLKSVECLRLLT 1272
Query: 520 LHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRT 579
L+H AFPVDTNV RIAVRLGWVPL+PLP LQLHLLE YPV+++IQKYLWPRLCKLDQ+T
Sbjct: 1273 LYHDAFPVDTNVARIAVRLGWVPLEPLPGVLQLHLLEEYPVMDTIQKYLWPRLCKLDQKT 1332
Query: 580 LYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPG----PEEKAIVS 635
LYELHYQMITFGKVFCTK KPNC CPMR ECRH ASA AS L LPG EE++ V
Sbjct: 1333 LYELHYQMITFGKVFCTKLKPNCGVCPMRAECRHLASAIASENLCLPGIPKRGEERSKVP 1392
Query: 636 --ANENRTNTQNPAMMINQLPLPLTHATDLPVGKLEIAVNNCEPIIEEPATPEPERVQVS 693
+ E+ N A+++N + L+ K E +CEP+IEEP +PEP
Sbjct: 1393 NMSLESSAVDANDALIVNPTAVSLSGYVKASESKFE--TQSCEPLIEEPKSPEPVA---- 1446
Query: 694 ENDIED------TFCEDPEEIPTIKLNMKEFTQTLQNYMQENL-ELQEGDMSKALVALTA 746
DIED D EEIP I+L+ + F +Q +M E LQ S+ALV L+
Sbjct: 1447 --DIEDFEIANGIDINDGEEIPIIQLSNEPFRANVQYFMDEYRNNLQTDSSSRALVPLSV 1504
Query: 747 GAASIPAPKLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSI 806
S+P KLKN+SRLRTEHQVYE+PD H LL G+ + + +D YLLAIWTPGE+ S
Sbjct: 1505 NVDSVPVRKLKNISRLRTEHQVYEIPDDHELLIGLPRPDRNDQSPYLLAIWTPGESPASC 1564
Query: 807 QPPESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQV 866
QPPE RC+SQ ++C ++TCF C S+ E + VRGTIL+PCRTAMRG FPLNGTYFQV
Sbjct: 1565 QPPEKRCNSQ-GAELCKDETCFYCQSIWEERTETVRGTILVPCRTAMRGRFPLNGTYFQV 1623
Query: 867 NEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRG 926
NEVFADH+SS I VPR +W L RR VY GTS +IFK + + IQ FW+G++CVRG
Sbjct: 1624 NEVFADHESSYNAIIVPRSSIWYLRRRIVYCGTSPNAIFKACSLKEIQENFWKGFICVRG 1683
Query: 927 FDQKSRAPRPLMARLHFPASKLNK 950
+D K+ AP+PL R H P SK+ K
Sbjct: 1684 WDAKTGAPKPLAKRFHCPPSKMVK 1707
>gi|6143875|gb|AAF04422.1|AC010927_15 hypothetical protein [Arabidopsis thaliana]
Length = 1309
Score = 590 bits (1522), Expect = e-165, Method: Compositional matrix adjust.
Identities = 302/530 (56%), Positives = 363/530 (68%), Gaps = 51/530 (9%)
Query: 410 KQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGR 469
++ DWDSLR++ E+ G K+ER E T D++DW+A+RC DV+KIAN I +RGMNNMLA R
Sbjct: 785 QKKSVDWDSLRKEAESGGRKRERTERTMDTVDWDALRCTDVHKIANIIIKRGMNNMLAER 844
Query: 470 IKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDT 529
IK FLNRLV+ HGS+DLEWLRDVPPDKAKEYLLS GLGLKSVECVRLL+LH +AFPVDT
Sbjct: 845 IKAFLNRLVKKHGSIDLEWLRDVPPDKAKEYLLSINGLGLKSVECVRLLSLHQIAFPVDT 904
Query: 530 NVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMIT 589
NVGRIAVRLGWVPLQPLP+ LQ+HLLE LYELHY MIT
Sbjct: 905 NVGRIAVRLGWVPLQPLPDELQMHLLE-----------------------LYELHYHMIT 941
Query: 590 FGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANENRTNTQNPAMM 649
FGKVFCTK KPNCNACPM+ ECRH++SA AS+RLALP PEE S + ++ ++
Sbjct: 942 FGKVFCTKVKPNCNACPMKAECRHYSSARASARLALPEPEESDRTSVMIHERRSKRKPVV 1001
Query: 650 INQLP-LPLTHATDLPVGKLEIAVNNCEPIIEEPATPEPERVQVSENDIED--------T 700
+N P L L + + + NCEPIIEEPA+PEPE + E+DIED
Sbjct: 1002 VNFRPSLFLYQEKEQEAQRSQ----NCEPIIEEPASPEPEYI---EHDIEDYPRDKNNVG 1054
Query: 701 FCEDPEE----IPTIKLNMKEFTQTLQNYMQENLELQEGDMSKALVALTAGAASIPAPKL 756
EDP E IPTI LN + T + + +E S LV L+ AA+IP KL
Sbjct: 1055 TSEDPWENKDVIPTIILNKEAGTS------HDLVVNKEAGTSHDLVVLSTYAAAIPRRKL 1108
Query: 757 KNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQ 816
K +LRTEH V+ELPD H +L G E+RE +D YLLAIWTPGET NSIQPP+ RC+
Sbjct: 1109 KIKEKLRTEHHVFELPDHHSILEGFERREAEDIVPYLLAIWTPGETVNSIQPPKQRCALF 1168
Query: 817 E-HGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDS 875
E + +C+E CF CN RE E Q VRGTILIPCRTAMRG FPLNGTYFQ NEVFADHDS
Sbjct: 1169 ESNNTLCNENKCFQCNKTREEESQTVRGTILIPCRTAMRGGFPLNGTYFQTNEVFADHDS 1228
Query: 876 SLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRG-YVCV 924
S+ PI+VP E +W+L RR Y G+S+ SI KGL+ E I++ F G +C+
Sbjct: 1229 SINPIDVPTELIWDLKRRVAYLGSSVSSICKGLSVEAIKYNFQEGMLICL 1278
>gi|357510919|ref|XP_003625748.1| DNA glycosylase [Medicago truncatula]
gi|355500763|gb|AES81966.1| DNA glycosylase [Medicago truncatula]
Length = 497
Score = 561 bits (1445), Expect = e-157, Method: Compositional matrix adjust.
Identities = 282/441 (63%), Positives = 318/441 (72%), Gaps = 71/441 (16%)
Query: 581 YELHYQMITFGKV--------------------------FCTKSKPNCNACPMRGECRHF 614
YELHYQ+ITFGKV FCTKSKPNCNACPMRGECRHF
Sbjct: 16 YELHYQLITFGKVNYISHASETDHILVKSSLNLNQCMQVFCTKSKPNCNACPMRGECRHF 75
Query: 615 ASAFASSRLALPGPEEKA---IVSANENRTNTQNPAMMINQLPLPL-------------T 658
ASAFAS+RLALPGPE+K +V N QNP+ +NQLPL L T
Sbjct: 76 ASAFASARLALPGPEQKEQKNLVITTGNNATDQNPSTTVNQLPLSLPGLEQKNIEITTGT 135
Query: 659 HATD---------LP------------------VGKLEI--AVNNCEPIIEEPATPEPER 689
ATD LP + +LE+ +NNC+PIIEEP TPEPE
Sbjct: 136 DATDQNSSVVINQLPLSLSENKNQTEELQQTVAIRQLEMNSEINNCQPIIEEPTTPEPEC 195
Query: 690 VQVSENDIEDTFCEDPEEIPTIKLNMKEFTQTLQNYMQENLELQEGDMSKALVALTAGAA 749
VSENDIED F E+ EIPTI L+++EFT LQNYMQEN+ELQEG+MSKALVAL AA
Sbjct: 196 SHVSENDIEDFFYEESNEIPTINLDIEEFTLNLQNYMQENMELQEGEMSKALVALNQEAA 255
Query: 750 SIPAPKLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPP 809
IP KLKNVSRLRTEH VYELPDSHPLL G EKREPDDPG+YLLAIWTPGETANSIQPP
Sbjct: 256 YIPTTKLKNVSRLRTEHSVYELPDSHPLLEGWEKREPDDPGKYLLAIWTPGETANSIQPP 315
Query: 810 ESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEV 869
+ RCS+Q+ G++C+E+ CFSCNS RE+ QIVRGTILIPCRTAMRGSFPLNGTYFQVNEV
Sbjct: 316 DRRCSAQDCGQLCNEEECFSCNSFREANSQIVRGTILIPCRTAMRGSFPLNGTYFQVNEV 375
Query: 870 FADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQ 929
FADH+SSL PI+VPR +WNL RRTV+FGTS+ SIFKGL T IQ CFWRG+VCVRGF++
Sbjct: 376 FADHESSLNPISVPRSLIWNLDRRTVHFGTSVTSIFKGLATPEIQQCFWRGFVCVRGFER 435
Query: 930 KSRAPRPLMARLHFPASKLNK 950
+RAPRPLMARLHFPAS+L K
Sbjct: 436 STRAPRPLMARLHFPASRLAK 456
>gi|52354425|gb|AAU44533.1| hypothetical protein AT4G34060 [Arabidopsis thaliana]
Length = 1044
Score = 516 bits (1330), Expect = e-143, Method: Compositional matrix adjust.
Identities = 273/571 (47%), Positives = 356/571 (62%), Gaps = 48/571 (8%)
Query: 398 TSKSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTI 457
T+K K+ + + DW++LRR G RPE DS++W VR + N + TI
Sbjct: 484 TAKRKNEKTGIIEDEIVDWNNLRRMYTKEGS---RPEMHMDSVNWSDVRLSGQNVLETTI 540
Query: 458 KERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRL 517
K+RG +L+ RI FLN V +G++DLEWLR+ P K YLL G+GLKS ECVRL
Sbjct: 541 KKRGQFRILSERILKFLNDEVNQNGNIDLEWLRNAPSHLVKRYLLEIEGIGLKSAECVRL 600
Query: 518 LTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQ 577
L L H AFPVDTNVGRIAVRLG VPL+PLP +Q+H L YP ++SIQKYLWPRLCKL Q
Sbjct: 601 LGLKHHAFPVDTNVGRIAVRLGLVPLEPLPNGVQMHQLFEYPSMDSIQKYLWPRLCKLPQ 660
Query: 578 RTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSAN 637
TLYELHYQMITFGKVFCTK+ PNCNACPM+ EC++FASA+ SS++ L PEEK
Sbjct: 661 ETLYELHYQMITFGKVFCTKTIPNCNACPMKSECKYFASAYVSSKVLLESPEEKM----- 715
Query: 638 ENRTNTQNPAMMINQLPLPLTHATDLPVGKL-------EIAVNNC-------EPIIEEPA 683
P +N H+ D+ V E + C +P++E P+
Sbjct: 716 ------HEPNTFMN------AHSQDVAVDMTSNINLVEECVSSGCSDQAICYKPLVEFPS 763
Query: 684 TPEPERVQVSEN-DIEDT----FCEDPEEIPTIKLNMKEFTQTLQNYMQENLELQEGD-- 736
+P R ++ E+ DIED + +P I ++ +++++ + + + D
Sbjct: 764 SP---RAEIPESTDIEDVPFMNLYQSYASVPKIDFDLDALKKSVEDALVISGRMSSSDEE 820
Query: 737 MSKALVALTAGAASIPAP---KLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYL 793
+SKALV T A IP K+K +RLRTEH VY LPD+H LL E+R+ DDP YL
Sbjct: 821 ISKALVIPTPENACIPIKPPRKMKYYNRLRTEHVVYVLPDNHELLHDFERRKLDDPSPYL 880
Query: 794 LAIWTPGETANSIQPPESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAM 853
LAIW PGET++S PP+ +CSS + K+C K C C ++RE I RGTILIPCRTAM
Sbjct: 881 LAIWQPGETSSSFVPPKKKCSS-DGSKLCKIKNCSYCWTIREQNSNIFRGTILIPCRTAM 939
Query: 854 RGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGI 913
RG+FPLNGTYFQ NEVFADH++SL PI RE L +R +Y G+++ SIFK L T I
Sbjct: 940 RGAFPLNGTYFQTNEVFADHETSLNPIVFRRELCKGLEKRALYCGSTVTSIFKLLDTRRI 999
Query: 914 QHCFWRGYVCVRGFDQKSRAPRPLMARLHFP 944
+ CFW G++C+R FD+K R P+ L+ RLH P
Sbjct: 1000 ELCFWTGFLCLRAFDRKQRDPKELVRRLHTP 1030
>gi|79496905|ref|NP_195132.3| DEMETER-like protein 3 [Arabidopsis thaliana]
gi|84028203|sp|O49498.2|DML3_ARATH RecName: Full=DEMETER-like protein 3
gi|332660916|gb|AEE86316.1| DEMETER-like protein 3 [Arabidopsis thaliana]
Length = 1044
Score = 516 bits (1329), Expect = e-143, Method: Compositional matrix adjust.
Identities = 273/571 (47%), Positives = 356/571 (62%), Gaps = 48/571 (8%)
Query: 398 TSKSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTI 457
T+K K+ + + DW++LRR G RPE DS++W VR + N + TI
Sbjct: 484 TAKRKNEKTGIIEDEIVDWNNLRRMYTKEGS---RPEMHMDSVNWSDVRLSGQNVLETTI 540
Query: 458 KERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRL 517
K+RG +L+ RI FLN V +G++DLEWLR+ P K YLL G+GLKS ECVRL
Sbjct: 541 KKRGQFRILSERILKFLNDEVNQNGNIDLEWLRNAPSHLVKRYLLEIEGIGLKSAECVRL 600
Query: 518 LTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQ 577
L L H AFPVDTNVGRIAVRLG VPL+PLP +Q+H L YP ++SIQKYLWPRLCKL Q
Sbjct: 601 LGLKHHAFPVDTNVGRIAVRLGLVPLEPLPNGVQMHQLFEYPSMDSIQKYLWPRLCKLPQ 660
Query: 578 RTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSAN 637
TLYELHYQMITFGKVFCTK+ PNCNACPM+ EC++FASA+ SS++ L PEEK
Sbjct: 661 ETLYELHYQMITFGKVFCTKTIPNCNACPMKSECKYFASAYVSSKVLLESPEEKM----- 715
Query: 638 ENRTNTQNPAMMINQLPLPLTHATDLPVGKL-------EIAVNNC-------EPIIEEPA 683
P +N H+ D+ V E + C +P++E P+
Sbjct: 716 ------HEPNTFMN------AHSQDVAVDMTSNINLVEECVSSGCSDQAICYKPLVEFPS 763
Query: 684 TPEPERVQVSEN-DIEDT----FCEDPEEIPTIKLNMKEFTQTLQNYMQENLELQEGD-- 736
+P R ++ E+ DIED + +P I ++ +++++ + + + D
Sbjct: 764 SP---RAEIPESTDIEDVPFMNLYQSYASVPKIDFDLDALKKSVEDALVISGRMSSSDEE 820
Query: 737 MSKALVALTAGAASIPAP---KLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYL 793
+SKALV T A IP K+K +RLRTEH VY LPD+H LL E+R+ DDP YL
Sbjct: 821 ISKALVIPTPENACIPIKPPRKMKYYNRLRTEHVVYVLPDNHELLHDFERRKLDDPSPYL 880
Query: 794 LAIWTPGETANSIQPPESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAM 853
LAIW PGET++S PP+ +CSS + K+C K C C ++RE I RGTILIPCRTAM
Sbjct: 881 LAIWQPGETSSSFVPPKKKCSS-DGSKLCKIKNCSYCWTIREQNSNIFRGTILIPCRTAM 939
Query: 854 RGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGI 913
RG+FPLNGTYFQ NEVFADH++SL PI RE L +R +Y G+++ SIFK L T I
Sbjct: 940 RGAFPLNGTYFQTNEVFADHETSLNPIVFRRELCKGLEKRALYCGSTVTSIFKLLDTRRI 999
Query: 914 QHCFWRGYVCVRGFDQKSRAPRPLMARLHFP 944
+ CFW G++C+R FD+K R P+ L+ RLH P
Sbjct: 1000 ELCFWTGFLCLRAFDRKQRDPKELVRRLHTP 1030
>gi|218190787|gb|EEC73214.1| hypothetical protein OsI_07297 [Oryza sativa Indica Group]
Length = 1165
Score = 516 bits (1328), Expect = e-143, Method: Compositional matrix adjust.
Identities = 260/471 (55%), Positives = 316/471 (67%), Gaps = 74/471 (15%)
Query: 400 KSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKE 459
K+++ R + K +DWD+LR++V N G ++R + KD++DWEA
Sbjct: 737 KARNVR-GRTKMKHYDWDNLRKEVLRNHGNRQRSDKAKDTIDWEA--------------- 780
Query: 460 RGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLT 519
DFLNRLVRDHGS+DLEWLRD+ PDKAK++LLS RGLGLKS ECVRLLT
Sbjct: 781 ------------DFLNRLVRDHGSIDLEWLRDIEPDKAKDFLLSIRGLGLKSTECVRLLT 828
Query: 520 LHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRT 579
LH +AFPVDTNV RI VRLGWVPLQPLPESLQLHLLELYP+LE IQKY+WPRLCKLDQ
Sbjct: 829 LHQMAFPVDTNVARICVRLGWVPLQPLPESLQLHLLELYPMLEHIQKYIWPRLCKLDQLI 888
Query: 580 LYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANEN 639
LYELHYQMITFGKVFC+KSKPNCN+CPMR EC+HFASAFAS+RLALPGP +K N
Sbjct: 889 LYELHYQMITFGKVFCSKSKPNCNSCPMRAECKHFASAFASARLALPGPSKKTSKPEYPN 948
Query: 640 RTNTQNPAMMINQLPLPLTHATDLPVGKLEIAVNNCEPIIEEPATPEPERVQVSENDIED 699
+ + TH+ P+G+L N+ + E E +IED
Sbjct: 949 DAESSHKK---------YTHSR--PMGQLSWNTNHPGHVYE-----------AREAEIED 986
Query: 700 TFCEDPEEIPTIKLNMKEFTQTLQNYMQ-ENLELQEGDMSKALVALTAGAASIPAPKLKN 758
F EDP+EIP I LN+KEF Q L++Y+ N+E+++ DMS ALVA++ AAS+P KLKN
Sbjct: 987 FFSEDPDEIPIINLNVKEFAQNLKSYIHANNIEIEDADMSNALVAISPQAASVPTSKLKN 1046
Query: 759 VSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTP------------------- 799
V+RLRTEHQVYELPDSHPLL G ++REPDDP YLL+IWTP
Sbjct: 1047 VNRLRTEHQVYELPDSHPLLEGFDQREPDDPSPYLLSIWTPGKLMCSHPTFTLIQVILMI 1106
Query: 800 ----GETANSIQPPESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTIL 846
GETA S P++ C+S+E GK C+ TCFSCNS RE + Q VRGT+L
Sbjct: 1107 KISTGETAQSTDAPKTFCNSKETGKFCESSTCFSCNSTREMQSQKVRGTLL 1157
>gi|45935143|gb|AAS79601.1| putative endonuclease III protein [Ipomoea trifida]
gi|118562896|dbj|BAF37786.1| hypothetical protein [Ipomoea trifida]
Length = 1687
Score = 513 bits (1322), Expect = e-142, Method: Compositional matrix adjust.
Identities = 291/614 (47%), Positives = 363/614 (59%), Gaps = 106/614 (17%)
Query: 397 ATSKSKSTRVSKE-KQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIAN 455
+ S K +V+K + D DW+ LRR P DS+DW AVRCA V +IA
Sbjct: 1097 SKSTEKKGKVTKMMPKPDVDWEELRRTYY---NPNRTPGTLMDSIDWNAVRCAPVGEIAK 1153
Query: 456 TIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECV 515
I+ RGMNN+LA +IK FL+RLV DHGS+DLEWL+DVPP+KAKE+LLS RG+GLKS ECV
Sbjct: 1154 VIENRGMNNVLAEKIKAFLDRLVEDHGSIDLEWLKDVPPEKAKEFLLSIRGVGLKSTECV 1213
Query: 516 RLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKL 575
RLLTL H AFPVDTN+ RI VRLGWVPL+PLP LQ+HL L
Sbjct: 1214 RLLTLGHHAFPVDTNIARIVVRLGWVPLEPLPGDLQIHL--------------------L 1253
Query: 576 DQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEK---- 631
DQ Y LHYQ+ITFGKV CTK PNCNACPMR EC+HFASAFASSRL L G EK
Sbjct: 1254 DQ---YVLHYQLITFGKVICTKKNPNCNACPMRAECKHFASAFASSRLRLRGAPEKPGMS 1310
Query: 632 -------------------------------AIVSANENRTNTQNPAMMINQLPLPLTHA 660
AI A+++ T+ I P L +
Sbjct: 1311 NSQPMLPHIPDIEDFPYKFKDSHIRQQPSALAIEIASQDADPTRGLVRDIEDFPYELGNK 1370
Query: 661 TD-LPVGKLEIAVNN---------CEPIIEEPAT-------------------PEPERVQ 691
+ L + ++N CEPIIE PA+ PEPE
Sbjct: 1371 YEILASQEFPYELDNKDEKSYTQTCEPIIEVPASLEPESQTCEPIIEVPASPEPEPESTV 1430
Query: 692 VSENDIEDTFCE---DPEEIPTIKLNMKEFTQTLQNYMQENLELQEGDMSKALVALTAGA 748
E DI + E D +EIP IKL+ +EF + L+ ++ N E ++ ++S ALVALT
Sbjct: 1431 SLERDISNILHETEDDDDEIPHIKLDTEEFKRNLKTFL--NSEFEDEEVSNALVALTPQD 1488
Query: 749 ASIPAPKLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQP 808
+IPAPK+K+V RLRT H+VY +PDSHPLL G E+RE DDP YLLAIW P E+ N
Sbjct: 1489 TTIPAPKIKSVERLRTRHRVYIVPDSHPLLIGFERRELDDPCPYLLAIW-PQESLNV--- 1544
Query: 809 PESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNE 868
+ CS D + F +E+ Q V GTILIPCRTA +GSFPLNGTYFQVNE
Sbjct: 1545 -KESCSQDSLICSGDLDSAF-----QETNNQTVCGTILIPCRTANKGSFPLNGTYFQVNE 1598
Query: 869 VFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFD 928
VFADH+SS+ PIN+PR+W+WNL +R +Y G++ +I +G+ + IQHCFW G+VCVR FD
Sbjct: 1599 VFADHESSVCPINIPRKWIWNLTQRYLYCGSTASAIARGMQMDEIQHCFWNGFVCVRAFD 1658
Query: 929 QKSRAPRPLMARLH 942
+++R P L R H
Sbjct: 1659 RQTRNPIHLSKRFH 1672
>gi|302818184|ref|XP_002990766.1| hypothetical protein SELMODRAFT_161136 [Selaginella moellendorffii]
gi|300141504|gb|EFJ08215.1| hypothetical protein SELMODRAFT_161136 [Selaginella moellendorffii]
Length = 470
Score = 503 bits (1296), Expect = e-139, Method: Compositional matrix adjust.
Identities = 287/506 (56%), Positives = 344/506 (67%), Gaps = 46/506 (9%)
Query: 462 MNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLH 521
MNN+LAGR+K FL+R+ +HGS+DLEW+RDVPP AK++LLS RGLGLKSVEC+RLL L
Sbjct: 1 MNNILAGRMKGFLDRVYEEHGSIDLEWIRDVPPQDAKDFLLSIRGLGLKSVECIRLLALD 60
Query: 522 HLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLY 581
HLAFPVDTNVGRI VRLGWVP+QPLPE L+LHLLELYPV E++QKY+WPRLC LD+ TLY
Sbjct: 61 HLAFPVDTNVGRILVRLGWVPIQPLPEELELHLLELYPVQETVQKYIWPRLCTLDRLTLY 120
Query: 582 ELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANENRT 641
ELHYQMITFGKVFCTK++PNCNACPMR ECRHFASA+AS+RLALP P + ++
Sbjct: 121 ELHYQMITFGKVFCTKTRPNCNACPMRMECRHFASAYASARLALPAPPTQCQQQGDKAGP 180
Query: 642 NTQNPAMMINQLPLPLTHATDLPVGKLEIAV---NNCEPIIEEPATPEPERVQVSEN--- 695
Q + LP P++ LP L V CEPIIEEP +PEPE S
Sbjct: 181 QQQEEVLT---LPPPVS----LPPATLTNVVATPKKCEPIIEEPGSPEPEPESESCEGSS 233
Query: 696 ---DIEDTFCEDPEEIPTIKLNMKEFTQTLQNYMQENLELQEGDMSKALVALTAGAASIP 752
D+ED E T+ LN+ E TQ Y + SK L+ L A IP
Sbjct: 234 TCPDMEDLLFTQGSE--TLHLNLIEQTQAPPQYTVASAS------SKELMVLPPEFAYIP 285
Query: 753 APKLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESR 812
PKLKN+ RLRT H VYELPD HPL++ +E RE DDP YLLA+W+ E QP S+
Sbjct: 286 VPKLKNIFRLRTVHYVYELPDHHPLVQQLEPREKDDPCFYLLALWSQDE-----QPQNSQ 340
Query: 813 CSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFAD 872
+Q+ ++ DE V+GT+LIPCRTAMRGSFPLNGTYFQVNEVFAD
Sbjct: 341 LENQQ--RVDDE---------------FVKGTLLIPCRTAMRGSFPLNGTYFQVNEVFAD 383
Query: 873 HDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSR 932
++ P+NV R LWNL R+ VYFGTS+P+IF+GLT + +Q CFW+GYVCVRGFD+KSR
Sbjct: 384 SETGNFPLNVSRSLLWNLHRKFVYFGTSVPAIFRGLTADEVQACFWKGYVCVRGFDRKSR 443
Query: 933 APRPLMARLHFPASKLNKVPGKADAD 958
+PRPL ARLH S P D D
Sbjct: 444 SPRPLAARLHIAPSNRKGQPIFNDGD 469
>gi|115446213|ref|NP_001046886.1| Os02g0494700 [Oryza sativa Japonica Group]
gi|113536417|dbj|BAF08800.1| Os02g0494700 [Oryza sativa Japonica Group]
Length = 1648
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 265/473 (56%), Positives = 324/473 (68%), Gaps = 66/473 (13%)
Query: 400 KSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKE 459
K+++ R + K +DWD+LR++V N G ++R + KD++DWEA
Sbjct: 1208 KARNVR-GRTKMKHYDWDNLRKEVLHNHGNRQRSDKAKDTIDWEA--------------- 1251
Query: 460 RGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLT 519
DFLNRLVRDHGS+DLEWLRD+ PDKAK +LLS RGLGLKS ECVRLLT
Sbjct: 1252 ------------DFLNRLVRDHGSIDLEWLRDIEPDKAKGFLLSIRGLGLKSTECVRLLT 1299
Query: 520 LHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRT 579
LH +AFPVDTNV RI VRLGWVPLQPLPESLQLHLLELYP+LE IQKY+WPRLCKLDQ
Sbjct: 1300 LHQMAFPVDTNVARICVRLGWVPLQPLPESLQLHLLELYPLLEHIQKYIWPRLCKLDQLI 1359
Query: 580 LYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANEN 639
LYELHYQMITFGKVFC+KSKPNCN+CPMR EC+HFASAFAS+RLALPGP +K N
Sbjct: 1360 LYELHYQMITFGKVFCSKSKPNCNSCPMRAECKHFASAFASARLALPGPSKKTSKPEYPN 1419
Query: 640 RTNTQNPAMMINQLPLPLTHATDLPVGKLEIAVNNCEPIIEEPATPEPER--VQVSENDI 697
+ + TH+ P+G+L N+ + EP+TPEPE + E +I
Sbjct: 1420 DAESSHKK---------YTHSR--PMGQLSWNTNHPGHVY-EPSTPEPEPDIAEAREAEI 1467
Query: 698 EDTFCEDPEEIPTIKLNMKEFTQTLQNYMQ-ENLELQEGDMSKALVALTAGAASIPAPKL 756
ED F EDP+EIP I LN++EF Q L++Y+ N+E+++ DMS ALVA++ AAS+P KL
Sbjct: 1468 EDFFSEDPDEIPIINLNVEEFAQNLKSYIHANNIEIEDADMSNALVAISPQAASVPTSKL 1527
Query: 757 KNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTP----------------- 799
KNV+RLRTEHQVYELPDSHPLL G ++REPDDP YLL+IWTP
Sbjct: 1528 KNVNRLRTEHQVYELPDSHPLLEGFDQREPDDPSPYLLSIWTPGKLMCSHPTFTLIQVIL 1587
Query: 800 ------GETANSIQPPESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTIL 846
GETA S P++ C+S+E GK+C+ TCFSCNS RE + Q VRGT+L
Sbjct: 1588 MIKISTGETAQSTDAPKTFCNSKETGKLCESSTCFSCNSTREMQSQKVRGTLL 1640
>gi|302809902|ref|XP_002986643.1| hypothetical protein SELMODRAFT_450920 [Selaginella moellendorffii]
gi|302809904|ref|XP_002986644.1| hypothetical protein SELMODRAFT_450920 [Selaginella moellendorffii]
gi|300145531|gb|EFJ12206.1| hypothetical protein SELMODRAFT_450920 [Selaginella moellendorffii]
gi|300145532|gb|EFJ12207.1| hypothetical protein SELMODRAFT_450920 [Selaginella moellendorffii]
Length = 469
Score = 501 bits (1289), Expect = e-138, Method: Compositional matrix adjust.
Identities = 286/506 (56%), Positives = 343/506 (67%), Gaps = 47/506 (9%)
Query: 462 MNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLH 521
MNN+LAGR+K FL+R+ +HGS+DLEW+RDVPP AK++LLS RGLGLKSVEC+RLL L
Sbjct: 1 MNNILAGRMKGFLDRVYEEHGSIDLEWIRDVPPQDAKDFLLSIRGLGLKSVECIRLLALD 60
Query: 522 HLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLY 581
HLAFPVDTNVGRI VRLGWVP+QPLPE L+LHLLELYPV E++QKY+WPRLC LD+ TLY
Sbjct: 61 HLAFPVDTNVGRILVRLGWVPIQPLPEELELHLLELYPVQETVQKYVWPRLCTLDRLTLY 120
Query: 582 ELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANENRT 641
ELHYQMITFGKVFCTK++PNCNACPMR ECRHFASA+AS+RLALP P + ++
Sbjct: 121 ELHYQMITFGKVFCTKTRPNCNACPMRMECRHFASAYASARLALPAPPTQCEQQGDKAGA 180
Query: 642 NTQNPAMMINQLPLPLTHATDLPVGKLEIAV---NNCEPIIEEPATPEPERVQVSEN--- 695
Q + LP P++ LP L V CEPIIEEP +PEPE S
Sbjct: 181 QQQE----VLTLPPPVS----LPPATLTNVVATPKKCEPIIEEPRSPEPEPESESCEGSS 232
Query: 696 ---DIEDTFCEDPEEIPTIKLNMKEFTQTLQNYMQENLELQEGDMSKALVALTAGAASIP 752
D+ED E T+ LN+ E Q Y + SK L+ L A IP
Sbjct: 233 TCPDMEDLLFTQGSE--TLHLNLIEQPQAPPQYTVASAS------SKELMVLPPEFAYIP 284
Query: 753 APKLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESR 812
PKLKN+ RLRT H VYELPD HPL++ +E RE DDP YLLA+W+ E QP S+
Sbjct: 285 VPKLKNIFRLRTVHYVYELPDHHPLVQQLEPREKDDPCFYLLALWSQDE-----QPQNSQ 339
Query: 813 CSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFAD 872
+Q+ ++ DE V+GT+LIPCRTAMRGSFPLNGTYFQVNEVFAD
Sbjct: 340 LENQQ--RVDDE---------------FVKGTLLIPCRTAMRGSFPLNGTYFQVNEVFAD 382
Query: 873 HDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSR 932
++ P+NV R LWNL R+ VYFGTS+P+IF+GLT + +Q CFW+GYVCVRGFD+KSR
Sbjct: 383 SETGNFPLNVSRSLLWNLHRKFVYFGTSVPAIFRGLTADEVQACFWKGYVCVRGFDRKSR 442
Query: 933 APRPLMARLHFPASKLNKVPGKADAD 958
+PRPL ARLH S P D D
Sbjct: 443 SPRPLAARLHIAPSNRKGQPIFNDGD 468
>gi|222622896|gb|EEE57028.1| hypothetical protein OsJ_06806 [Oryza sativa Japonica Group]
Length = 1615
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 259/471 (54%), Positives = 316/471 (67%), Gaps = 74/471 (15%)
Query: 400 KSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKE 459
K+++ R + K +DWD+LR++V N G ++R + KD++DWEA
Sbjct: 1187 KARNVR-GRTKMKHYDWDNLRKEVLHNHGNRQRSDKAKDTIDWEA--------------- 1230
Query: 460 RGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLT 519
DFLNRLVRDHGS+DLEWLRD+ PDKAK +LLS RGLGLKS ECVRLLT
Sbjct: 1231 ------------DFLNRLVRDHGSIDLEWLRDIEPDKAKGFLLSIRGLGLKSTECVRLLT 1278
Query: 520 LHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRT 579
LH +AFPVDTNV RI VRLGWVPLQPLPESLQLHLLELYP+LE IQKY+WPRLCKLDQ
Sbjct: 1279 LHQMAFPVDTNVARICVRLGWVPLQPLPESLQLHLLELYPLLEHIQKYIWPRLCKLDQLI 1338
Query: 580 LYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANEN 639
LYELHYQMITFGKVFC+KSKPNCN+CPMR EC+HFASAFAS+RLALPGP +K N
Sbjct: 1339 LYELHYQMITFGKVFCSKSKPNCNSCPMRAECKHFASAFASARLALPGPSKKTSKPEYPN 1398
Query: 640 RTNTQNPAMMINQLPLPLTHATDLPVGKLEIAVNNCEPIIEEPATPEPERVQVSENDIED 699
+ + TH+ P+G+L N+ + E E +IED
Sbjct: 1399 DAESSHKK---------YTHSR--PMGQLSWNTNHPGHVYE-----------AREAEIED 1436
Query: 700 TFCEDPEEIPTIKLNMKEFTQTLQNYMQ-ENLELQEGDMSKALVALTAGAASIPAPKLKN 758
F EDP+EIP I LN++EF Q L++Y+ N+E+++ DMS ALVA++ AAS+P KLKN
Sbjct: 1437 FFSEDPDEIPIINLNVEEFAQNLKSYIHANNIEIEDADMSNALVAISPQAASVPTSKLKN 1496
Query: 759 VSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTP------------------- 799
V+RLRTEHQVYELPDSHPLL G ++REPDDP YLL+IWTP
Sbjct: 1497 VNRLRTEHQVYELPDSHPLLEGFDQREPDDPSPYLLSIWTPGKLMCSHPTFTLIQVILMI 1556
Query: 800 ----GETANSIQPPESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTIL 846
GETA S P++ C+S+E GK+C+ TCFSCNS RE + Q VRGT+L
Sbjct: 1557 KISTGETAQSTDAPKTFCNSKETGKLCESSTCFSCNSTREMQSQKVRGTLL 1607
>gi|224068973|ref|XP_002326244.1| DNA glycosylase [Populus trichocarpa]
gi|222833437|gb|EEE71914.1| DNA glycosylase [Populus trichocarpa]
Length = 257
Score = 470 bits (1209), Expect = e-129, Method: Compositional matrix adjust.
Identities = 215/254 (84%), Positives = 233/254 (91%)
Query: 697 IEDTFCEDPEEIPTIKLNMKEFTQTLQNYMQENLELQEGDMSKALVALTAGAASIPAPKL 756
+EDTFCEDP+EIP IKLN++EFTQ LQNYMQEN+ELQE DMSKALVALTA AASIP PKL
Sbjct: 1 MEDTFCEDPDEIPIIKLNIEEFTQNLQNYMQENMELQEADMSKALVALTAEAASIPVPKL 60
Query: 757 KNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQ 816
KNVSRLRTEHQVYELPDSHPLL+ +++REPDDP YLLAIWTPGETANSIQP E CS
Sbjct: 61 KNVSRLRTEHQVYELPDSHPLLQRLDRREPDDPCSYLLAIWTPGETANSIQPLERSCSLH 120
Query: 817 EHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSS 876
E GK+CDEKTCFSCN++RE QIVRGT+LIPCRTAMRGSFPLNGTYFQVNEVFADHDSS
Sbjct: 121 ECGKLCDEKTCFSCNNIREENSQIVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSS 180
Query: 877 LKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRP 936
L PI+VPR W+WNLPRRTVYFGTSIP+IFKGLTT GIQHCFWRGYVCVRGFDQK+RAPRP
Sbjct: 181 LNPIDVPRAWIWNLPRRTVYFGTSIPTIFKGLTTAGIQHCFWRGYVCVRGFDQKTRAPRP 240
Query: 937 LMARLHFPASKLNK 950
LMARLHFPASKL +
Sbjct: 241 LMARLHFPASKLTQ 254
>gi|357495073|ref|XP_003617825.1| DNA glycosylase [Medicago truncatula]
gi|355519160|gb|AET00784.1| DNA glycosylase [Medicago truncatula]
Length = 1004
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 249/562 (44%), Positives = 336/562 (59%), Gaps = 84/562 (14%)
Query: 416 WDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLN 475
W++LR+ + + +H DS+DWEAVR A+VN++A IK+RG N++A +I+ L
Sbjct: 454 WETLRK---IHSKSDQHIDHA-DSVDWEAVRDANVNEVAAAIKKRGQQNIIAYKIQVALK 509
Query: 476 RLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIA 535
+ +HGS++LEWL+D+PP++AKEY LS GLGLKSVEC+RLLTL H++FPVD NVGRI
Sbjct: 510 GFMVNHGSMNLEWLKDIPPNEAKEYFLSIFGLGLKSVECLRLLTLQHISFPVDVNVGRIV 569
Query: 536 VRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFC 595
VRLGWVPLQPLPES+Q+H LE +P IQ+YLWPRLCKLD +TLYELHYQ+ITFGKVFC
Sbjct: 570 VRLGWVPLQPLPESIQIHNLEKFPDPIKIQQYLWPRLCKLDHQTLYELHYQLITFGKVFC 629
Query: 596 TKSKPNCNACPMRGECRHFASAFASSRLALP--GPEEKAIVSANENRTNTQNPAMMINQL 653
TK PNCNACPM+ C+++AS+ A ++LALP +++IV+ M +
Sbjct: 630 TKRNPNCNACPMKDGCKYYASSLARTKLALPPKSTTDQSIVATQ-----------MDHCF 678
Query: 654 PLP--LTHATDLPVGKLEIAVNNCEPIIEEPATPEPERVQVSENDIEDTFCEDPEEI--- 708
P +++T K CEPI+E PA+PE +D EEI
Sbjct: 679 PYSDYWSNSTSTLFTK---ESKECEPIVEMPASPE--------------LIDDDEEIYHD 721
Query: 709 ---------------------------PTIKLNMKEFTQTLQNYMQENLELQEG-DMSKA 740
PT ++ +E + L Y E G + S++
Sbjct: 722 YTYESDEEDIESDEEDIESDEEDIEDIPTFNISSQESSSCLPMYGNSFEEFDHGVNASQS 781
Query: 741 LVALTAGAASIPAPKLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPG 800
LVA A + K+KN SRL+TE VY L D+HPLL RE DDP YLL +W P
Sbjct: 782 LVAFHPNATNSHLSKMKNASRLKTERTVYVLTDNHPLLAEYPSREHDDPSPYLLVVWRPA 841
Query: 801 ETANSIQPPESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLN 860
E +S + ++ +E S+ + V GT+LIPCRTAMR FPLN
Sbjct: 842 ELESSGESSKTDLHEEE-----------------SSQTETVPGTLLIPCRTAMRARFPLN 884
Query: 861 GTYFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRG 920
GTYFQVNEVFAD+ S KPI+VPR+W+W+L ++ YFGT S+ +GL+ E I+ F +G
Sbjct: 885 GTYFQVNEVFADYASMKKPIHVPRKWIWSLKKQIAYFGTGASSMTRGLSMEEIKDFFCKG 944
Query: 921 YVCVRGFDQKSRAPRPLMARLH 942
++CVR D + APRP+ + LH
Sbjct: 945 FICVRAIDTNTGAPRPISSILH 966
>gi|52353713|gb|AAU44279.1| unknow protein [Oryza sativa Japonica Group]
Length = 375
Score = 453 bits (1165), Expect = e-124, Method: Compositional matrix adjust.
Identities = 227/374 (60%), Positives = 278/374 (74%), Gaps = 10/374 (2%)
Query: 587 MITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANENRTNTQNP 646
MITFGKVFCTKSKPNCNACPMR ECRHFASAFAS+RLALP P++K +V+ + N+ N
Sbjct: 1 MITFGKVFCTKSKPNCNACPMRSECRHFASAFASARLALPSPQDKRLVNLS-NQFAFHNG 59
Query: 647 AMMI-NQLPLPLTHATDLPVGKLEIAVNNCEPIIEEPATPEPERVQVSE-NDIEDTFCED 704
M N PLP + + ++ NN PIIEEPA+P E + NDIED F ED
Sbjct: 60 TMPTPNSTPLPQLEGS---IHARDVHANNTNPIIEEPASPREEECRELLENDIED-FDED 115
Query: 705 PEEIPTIKLNMKEFTQTLQNYMQE-NLELQEGDMSKALVALTAGAASIPAPKLKNVSRLR 763
+EIP IKLNM+ F+Q L+N ++E N + Q D++KALVA++ AASIP PKLKNV RLR
Sbjct: 116 TDEIPIIKLNMEAFSQNLENCIKESNKDFQSDDITKALVAISNEAASIPVPKLKNVHRLR 175
Query: 764 TEHQVYELPDSHPLLR--GMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQEHGKM 821
TEH VYELPDSHPL++ +++REPDDP YLLAIWTP E ++ + P+ C+ Q G +
Sbjct: 176 TEHYVYELPDSHPLMQQLALDQREPDDPSPYLLAIWTPDELKDTREAPKPCCNPQTEGGL 235
Query: 822 CDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPIN 881
C + C +C S RE++++ VRGT+L+PCRTAMRGSFPLNGTYFQVNEVFADH SS PIN
Sbjct: 236 CSNEMCHNCVSERENQYRYVRGTVLVPCRTAMRGSFPLNGTYFQVNEVFADHSSSHNPIN 295
Query: 882 VPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMARL 941
+PRE LWNL RR VYFGTS+P+IFKGLTTE IQHCFWRG+VCVRGF+ ++RAPRPL
Sbjct: 296 IPREQLWNLHRRMVYFGTSVPTIFKGLTTEEIQHCFWRGFVCVRGFNMETRAPRPLCPHF 355
Query: 942 HFPASKLNKVPGKA 955
H ASKL + KA
Sbjct: 356 HLAASKLRRSSKKA 369
>gi|115446223|ref|NP_001046891.1| Os02g0496500 [Oryza sativa Japonica Group]
gi|48716417|dbj|BAD23025.1| transcriptional activator-like [Oryza sativa Japonica Group]
gi|48716542|dbj|BAD23146.1| transcriptional activator-like [Oryza sativa Japonica Group]
gi|113536422|dbj|BAF08805.1| Os02g0496500 [Oryza sativa Japonica Group]
Length = 1207
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 237/546 (43%), Positives = 318/546 (58%), Gaps = 57/546 (10%)
Query: 409 EKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAG 468
E+++ WD LR + + G K + DS DWEAV A +IAN+I RG + ++A
Sbjct: 670 EEKDTSHWDKLREEAYSKG-YKIKGTGISDSADWEAVLHAPAVEIANSIAVRGQHYVIAL 728
Query: 469 RIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVD 528
RI+ FL R+ +DHG+ DL+WLR VP + AK YL+S GLG KSV+C+RLL+L H FPVD
Sbjct: 729 RIQAFLKRVKKDHGNFDLDWLRYVPRESAKNYLISILGLGDKSVDCIRLLSLKHKGFPVD 788
Query: 529 TNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMI 588
NV RI RLGWV LQPLP S + HL+ LYP++ +QKYLWPRLC + + LYELH MI
Sbjct: 789 VNVARIVTRLGWVKLQPLPFSAEFHLVGLYPIMRDVQKYLWPRLCTISKEKLYELHCLMI 848
Query: 589 TFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANENRTNTQNPAM 648
TFGK CTK PNC ACP +C+++ S+ A RL+LP P E E + +T P
Sbjct: 849 TFGKAICTKVSPNCRACPFSAKCKYYNSSLA--RLSLP-PAEGHGHEYGEEQASTATPGR 905
Query: 649 MI----------NQLPLPLTHATDLPVGKLEIAVNNCEPIIEEPATPEPERVQ--VSEND 696
++ Q+ P ++P G+ I CEPIIE P +PE E + +
Sbjct: 906 LLLSNDSHIAGFQQVCQPQIK-INMPAGRESIY--KCEPIIEIPPSPEHEYEESPYEQEL 962
Query: 697 IEDTFCEDPEEIPTIKLNMKEFTQTLQNYMQENLELQEGDMSKALVALTAGAASIPAPKL 756
ED C+ + IP ++ + + +L++ + N + K L + + AS+ +L
Sbjct: 963 YEDDLCDIEDTIPELQYDFEIDLCSLKHTV--NNGSWTPNSGKDLALINSQHASVQNKRL 1020
Query: 757 KNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQ 816
KN+ RLRTEH Y LPD H +L E R P+DP YLL +
Sbjct: 1021 KNIGRLRTEHNAYVLPDDHAILEEFEDRVPEDPCPYLLVV-------------------- 1060
Query: 817 EHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSS 876
SC S+ V+GTILIPCRTA RG+FPLNGTYFQ +EVFADH SS
Sbjct: 1061 -----------ISC-----SDEHTVKGTILIPCRTATRGNFPLNGTYFQDHEVFADHSSS 1104
Query: 877 LKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRP 936
PI +PRE +WNL R VYFG+SI SI KG T + I+ C+ +GY+CVRGFD+ +R P+P
Sbjct: 1105 RSPITIPRECIWNLDRCIVYFGSSIQSIMKGQTRQDIEDCYKKGYICVRGFDRNTRYPKP 1164
Query: 937 LMARLH 942
+ A+LH
Sbjct: 1165 ICAKLH 1170
>gi|186516091|ref|NP_001119112.1| DEMETER-like protein 3 [Arabidopsis thaliana]
gi|332660917|gb|AEE86317.1| DEMETER-like protein 3 [Arabidopsis thaliana]
Length = 957
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 235/495 (47%), Positives = 304/495 (61%), Gaps = 48/495 (9%)
Query: 398 TSKSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTI 457
T+K K+ + + DW++LRR G RPE DS++W VR + N + TI
Sbjct: 484 TAKRKNEKTGIIEDEIVDWNNLRRMYTKEGS---RPEMHMDSVNWSDVRLSGQNVLETTI 540
Query: 458 KERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRL 517
K+RG +L+ RI FLN V +G++DLEWLR+ P K YLL G+GLKS ECVRL
Sbjct: 541 KKRGQFRILSERILKFLNDEVNQNGNIDLEWLRNAPSHLVKRYLLEIEGIGLKSAECVRL 600
Query: 518 LTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQ 577
L L H AFPVDTNVGRIAVRLG VPL+PLP +Q+H L YP ++SIQKYLWPRLCKL Q
Sbjct: 601 LGLKHHAFPVDTNVGRIAVRLGLVPLEPLPNGVQMHQLFEYPSMDSIQKYLWPRLCKLPQ 660
Query: 578 RTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSAN 637
TLYELHYQMITFGKVFCTK+ PNCNACPM+ EC++FASA+ SS++ L PEEK
Sbjct: 661 ETLYELHYQMITFGKVFCTKTIPNCNACPMKSECKYFASAYVSSKVLLESPEEKM----- 715
Query: 638 ENRTNTQNPAMMINQLPLPLTHATDLPVGKL-------EIAVNNC-------EPIIEEPA 683
P +N H+ D+ V E + C +P++E P+
Sbjct: 716 ------HEPNTFMN------AHSQDVAVDMTSNINLVEECVSSGCSDQAICYKPLVEFPS 763
Query: 684 TPEPERVQVSEN-DIEDT----FCEDPEEIPTIKLNMKEFTQTLQNYMQENLELQEGD-- 736
+P R ++ E+ DIED + +P I ++ +++++ + + + D
Sbjct: 764 SP---RAEIPESTDIEDVPFMNLYQSYASVPKIDFDLDALKKSVEDALVISGRMSSSDEE 820
Query: 737 MSKALVALTAGAASIPAP---KLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYL 793
+SKALV T A IP K+K +RLRTEH VY LPD+H LL E+R+ DDP YL
Sbjct: 821 ISKALVIPTPENACIPIKPPRKMKYYNRLRTEHVVYVLPDNHELLHDFERRKLDDPSPYL 880
Query: 794 LAIWTPGETANSIQPPESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAM 853
LAIW PGET++S PP+ +CSS + K+C K C C ++RE I RGTILIPCRTAM
Sbjct: 881 LAIWQPGETSSSFVPPKKKCSS-DGSKLCKIKNCSYCWTIREQNSNIFRGTILIPCRTAM 939
Query: 854 RGSFPLNGTYFQVNE 868
RG+FPLNGTYFQ NE
Sbjct: 940 RGAFPLNGTYFQTNE 954
>gi|357142346|ref|XP_003572541.1| PREDICTED: protein ROS1-like [Brachypodium distachyon]
Length = 992
Score = 404 bits (1037), Expect = e-109, Method: Compositional matrix adjust.
Identities = 237/574 (41%), Positives = 314/574 (54%), Gaps = 76/574 (13%)
Query: 391 LNGIDDATSKSKSTRVSKEK-------QNDFDWDSLRRQVEANGGKKERPEHTKDSLDWE 443
LN + D +S S + + K ++ WD LR + G D +DWE
Sbjct: 444 LNLVKDKSSNSVCSETTLRKFIASLRLEDTAHWDRLRGEACRKGYDNRSETRITDKVDWE 503
Query: 444 AVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLS 503
AV A + ++A I RG + +LA RI+ FL R+ +DHGS DL+WL+ VP + AK YLLS
Sbjct: 504 AVLHAPLIEVAKCIAGRGQHYLLALRIQAFLARIKKDHGSFDLDWLKYVPRESAKNYLLS 563
Query: 504 FRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLES 563
GLG KSV+C+RLL+L AFPVD NV RI RL WV L+ PE + HL++LYP+++
Sbjct: 564 VNGLGAKSVDCIRLLSLKQKAFPVDVNVSRIVTRLEWVELECSPE--EFHLVDLYPLMKD 621
Query: 564 IQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRL 623
IQ YLWPRLC + + LYELH MITFGKV CTK+ PNC ACP R CR++ S A S L
Sbjct: 622 IQTYLWPRLCTIGKEKLYELHCLMITFGKVICTKAAPNCKACPFRARCRYYKSNLARSLL 681
Query: 624 A-------LPGPEEKAIVSANE----NRTNTQNPAMMINQLPLPLTHATDLPVGKLEIAV 672
PG E+ ++V++ N + T + NQ+ T +
Sbjct: 682 PPAEESVHGPGEEQTSMVTSERLLLPNGSCTPGHLVCQNQIKESKTAG--------RVPT 733
Query: 673 NNCEPIIEEPATPEPERVQVSEN----DIEDTFCEDPEEIPTIKLNMKEFTQTLQNYMQE 728
NCEPIIE P +PE E + E DIED D E+ K+N+ + +
Sbjct: 734 RNCEPIIEVPPSPECEHEALDEQEQCLDIEDMM-SDGEQYDA-KINLCSYKPMV------ 785
Query: 729 NLELQEGDMSKALVALTAGAASIPAPKLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDD 788
++ + K LV + S +PKLKN RLRTEH Y LPD H +L EKR P+D
Sbjct: 786 SIGCWTPNRGKDLVLSNSHHTSYQSPKLKNPGRLRTEHHAYVLPDDHVILEEFEKRVPED 845
Query: 789 PGRYLLAIWTPGETANSIQPPESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIP 848
P YLL + I P+ ++V+GT+LIP
Sbjct: 846 PCPYLLVV---------IPCPDD---------------------------EVVKGTMLIP 869
Query: 849 CRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGL 908
CRTA RG+FPLNGTYFQ +EVFAD+ SS PI + RE +W L R VYFG+SI SI KG
Sbjct: 870 CRTASRGNFPLNGTYFQDHEVFADYTSSRFPITIHRELIWELERCIVYFGSSIHSITKGQ 929
Query: 909 TTEGIQHCFWRGYVCVRGFDQKSRAPRPLMARLH 942
T + I+ CF +GYVC+R FD+++R P+ L A LH
Sbjct: 930 TRQDIEDCFKKGYVCIRAFDRQTRYPKRLCATLH 963
>gi|168003630|ref|XP_001754515.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694136|gb|EDQ80485.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 413
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 224/421 (53%), Positives = 276/421 (65%), Gaps = 29/421 (6%)
Query: 538 LGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTK 597
LGWVPL+PLPE LQLHLLELYPV +IQKYLWPRLCKLD +TLYELHYQMI+FGKVFCTK
Sbjct: 1 LGWVPLEPLPEELQLHLLELYPVQATIQKYLWPRLCKLDHQTLYELHYQMISFGKVFCTK 60
Query: 598 SKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANENRTNTQNPAMMINQLPLPL 657
SKPNCNACPMR EC+HFASA +S++LALP PE +R P P +
Sbjct: 61 SKPNCNACPMRPECKHFASAVSSAKLALPAPERP------HDRPTLALP-------PGTI 107
Query: 658 THATDLPVGKLEIAVNNCEPIIEEPATPEPERVQVSENDIEDT--FCEDPEEIPTIKLNM 715
+ + + + C+P +EEP TPE E +DIED E+ EE + L
Sbjct: 108 SSSGEDYLRPPRTVSQYCQPFVEEPMTPESEANVEDLDDIEDYPFSVEEVEEDAVMNLYQ 167
Query: 716 KEFTQTLQNYMQENLELQEGDMSKALVALTAGAASIPAPKLKNVSRLRTEHQVYELPDSH 775
+ + + M + S+ +V + AASIP PKLKNV RLRT H VYELPD+H
Sbjct: 168 ESPSTVTEQSMSGDANPNGSSGSQEMVLVPLEAASIPVPKLKNVGRLRTVHYVYELPDNH 227
Query: 776 PLLRGMEKREPDDPGRYLLAIWTPGETANSI---------QPPESRCSSQEHGKMCDEKT 826
PLL G++ REPDDP YLLAIW+P I + PES + ++ +E+
Sbjct: 228 PLLDGLDSREPDDPCTYLLAIWSPVTRLVLIVAYLELSVGKVPESIPNINDNA---NEEN 284
Query: 827 CFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPREW 886
F+ + E ++ T+L+PCRTAM+GSFPLNGTYFQVNEVFADH SSL+PI VPR
Sbjct: 285 PFASSGSEGDE--SIKATLLVPCRTAMQGSFPLNGTYFQVNEVFADHASSLQPILVPRTL 342
Query: 887 LWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMARLHFPAS 946
LWNL RR V+FGTS+ SIF+G+T E IQ CFWRGYVCVRGFD+ +RAP+PL+ RLH A
Sbjct: 343 LWNLRRRFVFFGTSVTSIFRGMTAEEIQACFWRGYVCVRGFDRTTRAPKPLVGRLHLQAG 402
Query: 947 K 947
K
Sbjct: 403 K 403
>gi|297802586|ref|XP_002869177.1| hypothetical protein ARALYDRAFT_353424 [Arabidopsis lyrata subsp.
lyrata]
gi|297315013|gb|EFH45436.1| hypothetical protein ARALYDRAFT_353424 [Arabidopsis lyrata subsp.
lyrata]
Length = 1072
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 231/567 (40%), Positives = 318/567 (56%), Gaps = 67/567 (11%)
Query: 398 TSKSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTI 457
T+K K+ + + DW +LR+ G RP+ DS++W VR + TI
Sbjct: 540 TAKRKNEKTGIMEDETVDWKTLRKMYTKEGS---RPKMHMDSVNWSDVRLSGQKVFETTI 596
Query: 458 KERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRL 517
+ RG +L+ RI FLN V+ +G++DLEWLR+ P D K YLL G+GLKS ECVRL
Sbjct: 597 RRRGQFRILSERILKFLNDEVQHNGTLDLEWLRNAPSDLVKRYLLEIEGIGLKSAECVRL 656
Query: 518 LTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH-LLELYPVLESIQKYLWPRLCKLD 576
L L H AFPVDTNVGRIAVRLGWVPL+PLP +Q+H L +L ++ I+K +
Sbjct: 657 LGLKHHAFPVDTNVGRIAVRLGWVPLEPLPNGVQMHQLFQLCFLINLIKKIHYTFTNN-- 714
Query: 577 QRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSA 636
Y L + +F +VFCTK PNCNACPM+ EC++FASA+ SS++ L GPEEK
Sbjct: 715 ----YLLSIKTNSF-QVFCTKVIPNCNACPMKSECKYFASAYVSSKVLLEGPEEKM---- 765
Query: 637 NENRTNTQNPAMMINQLPLPLTHATDLPVGKLEIAVNN--------CEPIIEEPATPEPE 688
P +N + +E V+ C+P++E P++P
Sbjct: 766 -------HEPDTFMNAYSQDADVDMTSNINLIEECVSPGCSDQAICCKPLVEFPSSP--- 815
Query: 689 RVQVSEN-DIEDTFCEDPEE----IPTIKLNMKEFTQTLQNYMQEN---LELQEGDMSKA 740
R ++ E+ DIED +P + +P I +M + +++ + + L + ++SKA
Sbjct: 816 RAEIPESTDIEDIPFINPYQLYARVPKIDFDMDALKKNVEDALVKGGRMLSSSDEEISKA 875
Query: 741 LVALTAGAASIPAP---KLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIW 797
LV LT A IP K+K RLRTEH VY LPD+H LL E+RE DDP YLLAIW
Sbjct: 876 LVVLTPENACIPIKPPRKMKYYDRLRTEHVVYVLPDNHELLHDFERRELDDPSPYLLAIW 935
Query: 798 TPGETANSIQPPESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSF 857
PGET++S PP+ +C+S + K+C K+C C ++RE RGTIL
Sbjct: 936 QPGETSSSFIPPKKKCNS-DGSKLCKIKSCSYCWTIREQSSNTFRGTIL----------- 983
Query: 858 PLNGTYFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCF 917
VFADH++SLKPI PRE L +R +Y G+S+ SIF+ L T IQ CF
Sbjct: 984 -----------VFADHETSLKPIVFPRELCDGLEKRALYCGSSVTSIFRFLDTRRIQLCF 1032
Query: 918 WRGYVCVRGFDQKSRAPRPLMARLHFP 944
W G++C+R FD+K R P+ L+ RLH P
Sbjct: 1033 WTGFLCMRAFDRKQRYPKELVRRLHTP 1059
>gi|383100759|emb|CCG47990.1| conserved hypothetical protein, expressed [Triticum aestivum]
Length = 950
Score = 394 bits (1013), Expect = e-106, Method: Compositional matrix adjust.
Identities = 234/595 (39%), Positives = 324/595 (54%), Gaps = 54/595 (9%)
Query: 363 NALYNRENTQLKSSVSDQNKYDHSFSKELN------GIDDATSKSKSTRVSKEK------ 410
+ +Y +EN L + + + F+ ++ G +D + K T + K
Sbjct: 365 STVYVKENLNLTKAPDAGDSTNSVFTNPIDCEEVGYGEEDKSGKPICTEKTLRKFIATLR 424
Query: 411 -QNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGR 469
++ WD LR++ G D ++WEAV+ A +A I RG + +LA R
Sbjct: 425 VEDTAHWDKLRKEAYGKGYDNGSKTRITDKVNWEAVQKASFVDVAKCIAGRGQHYLLALR 484
Query: 470 IKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDT 529
I+ FL R+ +DHGS DL+WLR +P + AK+YLLS GLG KSV+C+RLL+L H AFPVD
Sbjct: 485 IQAFLTRIKKDHGSFDLDWLRCLPRESAKKYLLSINGLGAKSVDCIRLLSLEHKAFPVDV 544
Query: 530 NVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMIT 589
NV RI RL WV LQ E + H ++LYP+++ +Q YLWPRLC +D+ LYELH MIT
Sbjct: 545 NVARIVTRLQWVELQCCSE--EFHSVDLYPLMQDVQSYLWPRLCTIDKEKLYELHCLMIT 602
Query: 590 FGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANENRTNTQNPAMM 649
FGKV CTK PNCNACP RG+CR++ S +R LP P E+ + E + + ++
Sbjct: 603 FGKVICTKVDPNCNACPFRGDCRYYKSKL--TRPLLP-PAEEHVRGGEEKTSIVTSERLL 659
Query: 650 INQLPLPLTHATDLPVGKLEIAVNNCEPIIEEPATPEPERVQVSENDI--EDTFCEDPEE 707
N +P +H + +CEPIIE P +PE E + E + ED + +
Sbjct: 660 SNGSCMP-SHQIEESRTAGRQPSRSCEPIIEVPPSPEYEYEALDEQEYPNEDDLVDIEDI 718
Query: 708 IPTIKLNMKEFTQTLQNYMQENLELQEGDMSKALVALTAGAASIPAPKLKNVSRLRTEHQ 767
+P + ++ E M N + K L + S K+K++ RLRTEH
Sbjct: 719 MPGVHYDV-EINLCSNKPMVSNCSWTP-NHGKDLALSNSQHTSR---KMKHIGRLRTEHL 773
Query: 768 VYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQEHGKMCDEKTC 827
Y LPD HPLL E+R P+DP YLL + PP +
Sbjct: 774 AYVLPDDHPLLEEFEERVPEDPSPYLLVL----HPCPDNPPPGA---------------- 813
Query: 828 FSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWL 887
E +V+GTILIPCRTA RG+FPLNGTYFQ +EVFAD SS PI+ E L
Sbjct: 814 --------VENCMVKGTILIPCRTASRGNFPLNGTYFQDHEVFADDSSSRLPIDFSSECL 865
Query: 888 WNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMARLH 942
+L + VYFG+SI SI KG T + I+ C+ +GYVC+RGFD+++R+PR L A LH
Sbjct: 866 NDLGKCIVYFGSSIHSITKGQTRQDIEDCYKKGYVCIRGFDRRTRSPRRLCAALH 920
>gi|242077266|ref|XP_002448569.1| hypothetical protein SORBIDRAFT_06g029335 [Sorghum bicolor]
gi|241939752|gb|EES12897.1| hypothetical protein SORBIDRAFT_06g029335 [Sorghum bicolor]
Length = 901
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 222/539 (41%), Positives = 289/539 (53%), Gaps = 58/539 (10%)
Query: 415 DWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFL 474
DW LR + G + T D +DWE+V A +++A I RG +N+L+ RI++ L
Sbjct: 385 DWKELREEAYKKGYNDKSGTETSDVVDWESVLNAPFSEVAKCIAVRGQHNILSVRIRELL 444
Query: 475 NRLVRDH-GSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGR 533
+ + + GS DL+WLR + +KAK+ LLS G G+KSV+C+ LL+L H AFPVD NV R
Sbjct: 445 DHVQKAQDGSFDLDWLRFISHEKAKKILLSIHGFGVKSVDCICLLSLRHRAFPVDVNVAR 504
Query: 534 IAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKV 593
I RLGWV LQPL HL+ LYP+L+ +Q+YLWPRLC +D+ LYELH MITFGKV
Sbjct: 505 IVTRLGWVKLQPL-NGADFHLINLYPLLDDVQRYLWPRLCTIDKEKLYELHCLMITFGKV 563
Query: 594 FCTKSKPNCNACPMRGECRHFASAFASSRLALP-------GPEEKAIVSANENRTNTQNP 646
CTK PNC ACP G C ++ S A L LP G ++ ++++ + Q
Sbjct: 564 VCTKQNPNCRACPFSGSCIYYNSLLARKPLPLPEKHEYEQGEQQAKMIASGSCTPSFQQ- 622
Query: 647 AMMINQLPLPLTHATDLPVGKLEIAVNNCEPIIEEPATPEPERVQV---SENDIEDTFCE 703
+ Q +P++ T+ P ++NCEPIIE P +PE E + EN D +
Sbjct: 623 ---MYQYQIPISSTTETP------PIHNCEPIIEMPPSPEYEHNRTPNEQENSYGDYYVC 673
Query: 704 DPEEIPTIKLNMKEFTQTLQNYMQENLELQEGDMSKALVALTAGAASIPAPKLKNVSRLR 763
D E+ + + N K L + + + KLKN+ RLR
Sbjct: 674 DIEDFAPEGVQYDAEINICSSKRVPNSNSWTPSRGKDLAVINPKGSFVRNKKLKNIGRLR 733
Query: 764 TEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQEHGKMCD 823
TEH Y LPD H +L E R P D YLL +
Sbjct: 734 TEHNAYVLPDDHRILEEFEDRVPGDTCPYLLVV--------------------------- 766
Query: 824 EKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVP 883
SC +F V GT+LIPCRTA RG FPLNGTYFQ NEVFAD+ SS PI +P
Sbjct: 767 ----LSC----PDDF-TVEGTVLIPCRTANRGKFPLNGTYFQENEVFADYSSSRNPITIP 817
Query: 884 REWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMARLH 942
RE + L R VYFG+SI SI KG T E IQ CF +GYVCVR F ++SR P L A LH
Sbjct: 818 RECIGLLKRSIVYFGSSIHSITKGQTREDIQECFKKGYVCVRAFHRRSRVPLRLCATLH 876
>gi|7406462|emb|CAB85564.1| putative protein [Arabidopsis thaliana]
Length = 234
Score = 387 bits (995), Expect = e-104, Method: Compositional matrix adjust.
Identities = 175/228 (76%), Positives = 201/228 (88%)
Query: 721 TLQNYMQENLELQEGDMSKALVALTAGAASIPAPKLKNVSRLRTEHQVYELPDSHPLLRG 780
TL+ +M+ N+ELQEGDMSKALVAL SIP PKLKN+SRLRTEHQVYELPDSH LL G
Sbjct: 2 TLREHMERNMELQEGDMSKALVALHPTTTSIPTPKLKNISRLRTEHQVYELPDSHRLLDG 61
Query: 781 MEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQEHGKMCDEKTCFSCNSVRESEFQI 840
M+KREPDDP YLLAIWTPGETANS QPPE +C + GKMC ++TC CNS+RE+ Q
Sbjct: 62 MDKREPDDPSPYLLAIWTPGETANSAQPPEQKCGGKASGKMCFDETCSECNSLREANSQT 121
Query: 841 VRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTS 900
VRGT+LIPCRTAMRGSFPLNGTYFQVNE+FADH+SSLKPI+VPR+W+W+LPRRTVYFGTS
Sbjct: 122 VRGTLLIPCRTAMRGSFPLNGTYFQVNELFADHESSLKPIDVPRDWIWDLPRRTVYFGTS 181
Query: 901 IPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMARLHFPASKL 948
+ SIF+GL+TE IQ CFW+G+VCVRGF+QK+RAPRPLMARLHFPASKL
Sbjct: 182 VTSIFRGLSTEQIQFCFWKGFVCVRGFEQKTRAPRPLMARLHFPASKL 229
>gi|413936930|gb|AFW71481.1| hypothetical protein ZEAMMB73_696780 [Zea mays]
Length = 650
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 222/546 (40%), Positives = 298/546 (54%), Gaps = 65/546 (11%)
Query: 415 DWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFL 474
+W L+ + G + T D +DWE+V A +++A I RG +N+LA RI FL
Sbjct: 125 NWKELQEEAYKKGYNNKSQTETSDVVDWESVLNAPFSEVAKCIAIRGQHNILAVRILAFL 184
Query: 475 NRLVRDH-GSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGR 533
+ + + GS DL+WLR V +KAK++LLS G+G+KS +C+ LL+L H AFPVD NV R
Sbjct: 185 DHVKKAQDGSFDLDWLRFVSREKAKKFLLSIHGIGVKSADCICLLSLRHRAFPVDVNVAR 244
Query: 534 IAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKV 593
I RLGWV LQPL HL++LYP+L+ +Q+YLWPRLC +D+ LYELH MITFGKV
Sbjct: 245 IVTRLGWVKLQPL-NGADFHLIDLYPILDDVQRYLWPRLCTIDKEKLYELHCLMITFGKV 303
Query: 594 FCTKSKPNCNACPMRGECRHFASAFASSRLALP-----GPEEKAIVSANENRTNTQNPAM 648
C K PNC ACP C+++ S+ A L LP G ++ ++V+ ++Q M
Sbjct: 304 VCRKKNPNCGACPFSASCKYYNSSLAKKSLPLPEKHEQGEQQTSMVAYGSCTPSSQQ--M 361
Query: 649 MINQLPLPLTHATDLPVGKLEIAVNNCEPIIEEPATPEPERVQV---SENDIEDTFCEDP 705
Q+ + T T+ P +++CEPI+E P +PE E + E+ ED C+
Sbjct: 362 YRYQIAISST-TTETP------PIHSCEPIVEMPPSPEYEYNETPNEQEDFYEDYACDIE 414
Query: 706 EEIPTIK----LNMKEFTQTLQNYMQENLELQEGDMSKALVALTAGAASIPAPKLKNVSR 761
+ P ++ +N+ TL N + K L + + + KLKN R
Sbjct: 415 DFAPGVQYDSEINICSNKHTLNN------NSWTPNCGKDLAVINPKCSFGQSKKLKNTGR 468
Query: 762 LRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQEHGKM 821
LRTEH Y LPD H +L E R P D YLL + I P+
Sbjct: 469 LRTEHNAYVLPDGHVILEEFEDRVPGDRCPYLLVV---------ISCPD----------- 508
Query: 822 CDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPIN 881
D K V+GT+LIPCRTA RG FPLNGTYFQ NEVFAD+ SS PI
Sbjct: 509 -DYK---------------VKGTVLIPCRTANRGKFPLNGTYFQENEVFADYSSSRNPIT 552
Query: 882 VPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMARL 941
VPRE + L R VYFG+SI SI KG T + IQ C GY+CVR F +K+R P L + L
Sbjct: 553 VPRECIGMLERSIVYFGSSIHSITKGQTRQDIQECLKEGYICVRSFHRKTRIPLRLCSTL 612
Query: 942 HFPASK 947
H +K
Sbjct: 613 HATNTK 618
>gi|293331251|ref|NP_001168988.1| uncharacterized protein LOC100382817 [Zea mays]
gi|223974285|gb|ACN31330.1| unknown [Zea mays]
Length = 650
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 221/546 (40%), Positives = 297/546 (54%), Gaps = 65/546 (11%)
Query: 415 DWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFL 474
+W L+ + G + T D +DWE+V A +++A I RG +N+LA RI FL
Sbjct: 125 NWKELQEEAYKKGYNNKSQTETSDVVDWESVLNAPFSEVAKCIAIRGQHNILAVRILAFL 184
Query: 475 NRLVRDH-GSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGR 533
+ + + GS DL+WLR V +KAK++LLS G+G+KS +C+ LL+L H AFPVD NV R
Sbjct: 185 DHVKKAQDGSFDLDWLRFVSREKAKKFLLSIHGIGVKSADCICLLSLRHRAFPVDVNVAR 244
Query: 534 IAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKV 593
I RLGWV LQPL HL++LYP+L+ +Q+YLWPRLC +D+ LYE H MITFGKV
Sbjct: 245 IVTRLGWVKLQPL-NGADFHLIDLYPILDDVQRYLWPRLCTIDKEKLYEPHCLMITFGKV 303
Query: 594 FCTKSKPNCNACPMRGECRHFASAFASSRLALP-----GPEEKAIVSANENRTNTQNPAM 648
C K PNC ACP C+++ S+ A L LP G ++ ++V+ ++Q M
Sbjct: 304 VCRKKNPNCGACPFSASCKYYNSSLAKKSLPLPEKHEQGEQQTSMVAYGSCTPSSQQ--M 361
Query: 649 MINQLPLPLTHATDLPVGKLEIAVNNCEPIIEEPATPEPERVQV---SENDIEDTFCEDP 705
Q+ + T T+ P +++CEPI+E P +PE E + E+ ED C+
Sbjct: 362 YRYQIAISST-TTETP------PIHSCEPIVEMPPSPEYEYNETPNEQEDFYEDYACDIE 414
Query: 706 EEIPTIK----LNMKEFTQTLQNYMQENLELQEGDMSKALVALTAGAASIPAPKLKNVSR 761
+ P ++ +N+ TL N + K L + + + KLKN R
Sbjct: 415 DFAPGVQYDSEINICSNKHTLNN------NSWTPNCGKDLAVINPKCSFGQSKKLKNTGR 468
Query: 762 LRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQEHGKM 821
LRTEH Y LPD H +L E R P D YLL + I P+
Sbjct: 469 LRTEHNAYVLPDGHVILEEFEDRVPGDRCPYLLVV---------ISCPD----------- 508
Query: 822 CDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPIN 881
D K V+GT+LIPCRTA RG FPLNGTYFQ NEVFAD+ SS PI
Sbjct: 509 -DYK---------------VKGTVLIPCRTANRGKFPLNGTYFQENEVFADYSSSRNPIT 552
Query: 882 VPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMARL 941
VPRE + L R VYFG+SI SI KG T + IQ C GY+CVR F +K+R P L + L
Sbjct: 553 VPRECIGMLERSIVYFGSSIHSITKGQTRQDIQECLKEGYICVRSFHRKTRIPLRLCSTL 612
Query: 942 HFPASK 947
H +K
Sbjct: 613 HATNTK 618
>gi|300681535|emb|CBH32632.1| conserved hypothetical protein, expressed [Triticum aestivum]
Length = 950
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 223/540 (41%), Positives = 299/540 (55%), Gaps = 63/540 (11%)
Query: 416 WDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLN 475
WD LR + G D ++WEAV+ A +A I RG + +LA RI+ FL
Sbjct: 431 WDKLRDEAYRKGYDNGSKTRITDKVNWEAVQQASFVDVAKCIAGRGQHYLLALRIQAFLT 490
Query: 476 RLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIA 535
R+ +DHGS DL+WLR +P + AK+YLLS GLG KSV+C+RLL+L H AFPVD NV RI
Sbjct: 491 RIKKDHGSFDLDWLRCLPRESAKKYLLSINGLGAKSVDCIRLLSLEHKAFPVDVNVARIV 550
Query: 536 VRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFC 595
RL WV LQ E + H ++LYP+++ +Q YLWPRLC +D+ LYELH MITFGKV C
Sbjct: 551 TRLQWVELQCCSE--EFHSVDLYPLMQDVQNYLWPRLCTIDKEKLYELHCLMITFGKVIC 608
Query: 596 TKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANENRTNTQNPAMMINQLPL 655
TK PNCNACP RG+CR++ S +R LP P E+ + E + + ++ N +
Sbjct: 609 TKVDPNCNACPFRGDCRYYKSKL--TRPLLP-PAEEHVRGGEEKTSIVTSERLLSNGSSI 665
Query: 656 PLTHATDLPVGKLEIAVNNCEPIIEEPATPEPERVQVSENDI--EDTFCEDPEEIPT--- 710
P +H + +CEPIIE P +PE E + E + ED D E+I +
Sbjct: 666 P-SHQIEESRTAGRQPSRSCEPIIEMPPSPEYEYEALDEQEYPNEDDLV-DIEDIMSGVH 723
Query: 711 --IKLNMKEFTQTLQNYMQENLELQEGDMSKALVALTAGAASIPAPKLKNVSRLRTEHQV 768
+++N+ T+ N ++ L + + K+K++ RLRTEH
Sbjct: 724 YDVEINLCSNKPTVSNCSWTPNRGKD---------LALSNSQHTSRKMKHIGRLRTEHLA 774
Query: 769 YELPDSHPLLRGMEKREPDDPGRYLLAIW------TPGETANSIQPPESRCSSQEHGKMC 822
Y LPD HPLL E+R P+DP YLL + PG N
Sbjct: 775 YVLPDGHPLLEEFEERVPEDPSPYLLVLHPCPDNPPPGAVQNC----------------- 817
Query: 823 DEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINV 882
+V+GTILIPCRTA G+FPLNGTYFQ +EVFAD SS PI
Sbjct: 818 -----------------MVKGTILIPCRTASTGNFPLNGTYFQDHEVFADDSSSRLPIVF 860
Query: 883 PREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMARLH 942
E L +L + VYFG+SI SI KG T + I+ C+ +GYVC+RGFD+++R+PR L A LH
Sbjct: 861 SSECLNDLGKCIVYFGSSIHSITKGQTRQDIEDCYKKGYVCIRGFDRRTRSPRRLRAALH 920
>gi|413945496|gb|AFW78145.1| hypothetical protein ZEAMMB73_419140 [Zea mays]
Length = 565
Score = 363 bits (932), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 174/277 (62%), Positives = 208/277 (75%), Gaps = 17/277 (6%)
Query: 346 LNLPKIS-----------SGSIDA--IESHNALYNRENTQLKSSVSDQNKYDHSFSKELN 392
LN PKIS S S +A ++ H +++ ++++ + S N
Sbjct: 280 LNTPKISTELPVKLHHDKSSSFEAPNLKEHESVFATHEMTVEATRKEDEHTSKSSFTSYN 339
Query: 393 GIDDAT---SKSKSTRVSKEKQND-FDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCA 448
G+ D SK K TR + K + FDW+ LRRQ + G K+R +DS+DWEAVRCA
Sbjct: 340 GVPDTAAQASKPKKTRTTTAKNTENFDWEKLRRQACSEGQMKQRSFERRDSIDWEAVRCA 399
Query: 449 DVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLG 508
DV +I++ I+ERGMNN+LA RI++FLNRLVRDHGS+DLEWLR +PPD AK+YLLS RGLG
Sbjct: 400 DVRRISHAIRERGMNNVLAERIQNFLNRLVRDHGSIDLEWLRYIPPDSAKDYLLSIRGLG 459
Query: 509 LKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYL 568
LKSVECVRLLTLHHLAFPVDTNVGRI VRLGWVP+QPLPESLQLHLLELYP+LE+IQKYL
Sbjct: 460 LKSVECVRLLTLHHLAFPVDTNVGRICVRLGWVPIQPLPESLQLHLLELYPILETIQKYL 519
Query: 569 WPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNAC 605
WPRLCKLDQ+TLYELHYQMITFGKVFCTK +PNCNAC
Sbjct: 520 WPRLCKLDQQTLYELHYQMITFGKVFCTKRQPNCNAC 556
>gi|4581149|gb|AAD24633.1| hypothetical protein [Arabidopsis thaliana]
Length = 1207
Score = 355 bits (912), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 209/453 (46%), Positives = 261/453 (57%), Gaps = 84/453 (18%)
Query: 398 TSKSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTI 457
T K K +V KE++ FDWD LRR+ +A G +E+ T+ ++D
Sbjct: 813 TLKEKGKKVLKEEKKAFDWDCLRREAQARAGIREK---TRSTMD---------------- 853
Query: 458 KERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRL 517
+VD + +R + E + S RG+ K E ++
Sbjct: 854 -------------------------TVDWKAIRAADVKEVAETIKS-RGMNHKLAERIQY 887
Query: 518 LTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQ 577
LTL+ + + R+ G + L+ W R D
Sbjct: 888 LTLNMKI--MQGFLDRLVNDHGSIDLE------------------------WLRDVPPD- 920
Query: 578 RTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSAN 637
+ YELHYQMITFGKVFCTKSKPNCNACPM+GECRHFASAFAS+RLALP E+
Sbjct: 921 KAKYELHYQMITFGKVFCTKSKPNCNACPMKGECRHFASAFASARLALPSTEKGM----- 975
Query: 638 ENRTNTQNPAMMINQLPLPLTHATDLPV---GKLEIAVNNCEPIIEEPATPEPERVQVSE 694
T +NP + LP P V + V CEPIIEEPA+PEPE +VS
Sbjct: 976 --GTPDKNPLPL--HLPEPFQREQGSEVVQHSEPAKKVTCCEPIIEEPASPEPETAEVSI 1031
Query: 695 NDIEDTFCEDPEEIPTIKLNMKEFTQTLQNYMQENLELQEGDMSKALVALTAGAASIPAP 754
DIE+ F EDPEEIPTI+LNM FT L+ M+ N ELQ+G+MS ALVALTA AS+P P
Sbjct: 1032 ADIEEAFFEDPEEIPTIRLNMDAFTSNLKKIMEHNKELQDGNMSSALVALTAETASLPMP 1091
Query: 755 KLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCS 814
KLKN+S+LRTEH+VYELPD HPLL +EKREPDDP YLLAIWTPGETA+SIQP S C
Sbjct: 1092 KLKNISQLRTEHRVYELPDEHPLLAQLEKREPDDPCSYLLAIWTPGETADSIQPSVSTCI 1151
Query: 815 SQEHGKMCDEKTCFSCNSVRESEFQIVRGTILI 847
Q +G +CDE+TCFSCNS++E+ QIVRGTIL+
Sbjct: 1152 FQANGMLCDEETCFSCNSIKETRSQIVRGTILV 1184
>gi|413925772|gb|AFW65704.1| hypothetical protein ZEAMMB73_319662 [Zea mays]
Length = 1522
Score = 300 bits (769), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 136/180 (75%), Positives = 157/180 (87%)
Query: 401 SKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKER 460
SK+ + K+ DWDSLR++V +NGG K+R +D++DWEAVR A+V +I+ TI+ER
Sbjct: 1343 SKAKVRGRPKKKTDDWDSLRKKVLSNGGDKQRSHDARDTVDWEAVRQAEVREISETIRER 1402
Query: 461 GMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTL 520
GMNNMLA RIK+FLNRLV DHGS+DLEWLRDV PDKAK++LLS RGLGLKSVECVRLLTL
Sbjct: 1403 GMNNMLAERIKEFLNRLVTDHGSIDLEWLRDVQPDKAKDFLLSIRGLGLKSVECVRLLTL 1462
Query: 521 HHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTL 580
HH+AFPVDTNVGRI VRLGWVPLQPLPESLQLHLLE+YP+LE IQKYLWPRLCKLDQRTL
Sbjct: 1463 HHMAFPVDTNVGRICVRLGWVPLQPLPESLQLHLLEMYPMLEHIQKYLWPRLCKLDQRTL 1522
>gi|48716531|dbj|BAD23135.1| putative transcriptional activator DEMETER [Oryza sativa Japonica
Group]
Length = 1552
Score = 296 bits (757), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 151/238 (63%), Positives = 176/238 (73%), Gaps = 33/238 (13%)
Query: 400 KSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKE 459
K+++ R + K +DWD+LR++V N G ++R + KD++DWEA
Sbjct: 1184 KARNVR-GRTKMKHYDWDNLRKEVLHNHGNRQRSDKAKDTIDWEA--------------- 1227
Query: 460 RGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLT 519
DFLNRLVRDHGS+DLEWLRD+ PDKAK +LLS RGLGLKS ECVRLLT
Sbjct: 1228 ------------DFLNRLVRDHGSIDLEWLRDIEPDKAKGFLLSIRGLGLKSTECVRLLT 1275
Query: 520 LHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRT 579
LH +AFPVDTNV RI VRLGWVPLQPLPESLQLHLLELYP+LE IQKY+WPRLCKLDQ
Sbjct: 1276 LHQMAFPVDTNVARICVRLGWVPLQPLPESLQLHLLELYPLLEHIQKYIWPRLCKLDQLI 1335
Query: 580 LYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSAN 637
LYELHYQMITFGKVFC+KSKPNCN+CPMR EC+HFASAFAS P+E I++ N
Sbjct: 1336 LYELHYQMITFGKVFCSKSKPNCNSCPMRAECKHFASAFASE-----DPDEIPIINLN 1388
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 91/168 (54%), Positives = 116/168 (69%), Gaps = 24/168 (14%)
Query: 703 EDPEEIPTIKLNMKEFTQTLQNYMQ-ENLELQEGDMSKALVALTAGAASIPAPKLKNVSR 761
EDP+EIP I LN++EF Q L++Y+ N+E+++ DMS ALVA++ AAS+P KLKNV+R
Sbjct: 1377 EDPDEIPIINLNVEEFAQNLKSYIHANNIEIEDADMSNALVAISPQAASVPTSKLKNVNR 1436
Query: 762 LRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTP---------------------- 799
LRTEHQVYELPDSHPLL G ++REPDDP YLL+IWTP
Sbjct: 1437 LRTEHQVYELPDSHPLLEGFDQREPDDPSPYLLSIWTPGKLMCSHPTFTLIQVILMIKIS 1496
Query: 800 -GETANSIQPPESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTIL 846
GETA S P++ C+S+E GK+C+ TCFSCNS RE + Q VRGT+L
Sbjct: 1497 TGETAQSTDAPKTFCNSKETGKLCESSTCFSCNSTREMQSQKVRGTLL 1544
>gi|357445859|ref|XP_003593207.1| Repressor of silencing [Medicago truncatula]
gi|355482255|gb|AES63458.1| Repressor of silencing [Medicago truncatula]
Length = 731
Score = 283 bits (724), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 145/296 (48%), Positives = 198/296 (66%), Gaps = 14/296 (4%)
Query: 331 SRFAMEPPAHAQKNDLNL--PKISSGSIDAIESHNA-----LYNRENTQLKSSVSDQNKY 383
+RF ++ + Q N++ PK S ++ +E+ A + N+E SS + K
Sbjct: 399 ARFPVKSVSCEQSNNMIFSDPK-SDKKVEEMEAQKANESSKVVNKETQN--SSYLIERKS 455
Query: 384 DHSFSKELNGIDDATSKSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWE 443
+ S +KE D SK + ++ K+ W++LR+ + +R DS+DWE
Sbjct: 456 NSSSNKEETHHDTKKSKKQEEKMMILKKKRQKWEALRKI----HSRSDRHIDHVDSIDWE 511
Query: 444 AVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLS 503
AVR A V ++A IK RG +N++A +I+ LN+ + HG+ DLEWL+ +PP++AKEYLL+
Sbjct: 512 AVRNAKVGEVAEAIKMRGQHNIIAKKIQLALNKFLEHHGTTDLEWLKYIPPNEAKEYLLN 571
Query: 504 FRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLES 563
GLGLKSVEC+RLLTL H++FPVD NVGRI VRLGWVPLQPLPES+Q+H LE +P
Sbjct: 572 IFGLGLKSVECLRLLTLQHISFPVDVNVGRIVVRLGWVPLQPLPESIQIHNLEQFPDPIK 631
Query: 564 IQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFA 619
IQ+YLWPRLCKLD TLYELHYQ+ITFGKVFCTK PNCNACPM+ C+++AS+ A
Sbjct: 632 IQQYLWPRLCKLDHHTLYELHYQLITFGKVFCTKRNPNCNACPMKDNCKYYASSLA 687
>gi|300681534|emb|CBH32631.1| conserved hypothetical protein [Triticum aestivum]
Length = 840
Score = 280 bits (717), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 159/388 (40%), Positives = 219/388 (56%), Gaps = 23/388 (5%)
Query: 416 WDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLN 475
WD LR + G D ++WEAV+ A +A I RG + +LA RI+ FL
Sbjct: 431 WDKLRDEAYRKGYDNGSKTRITDKVNWEAVQQASFVDVAKCIAGRGQHYLLALRIQAFLT 490
Query: 476 RLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIA 535
R+ +DHGS DL+WLR +P + AK+YLLS GLG KSV+C+RLL+L H AFPVD NV RI
Sbjct: 491 RIKKDHGSFDLDWLRCLPRESAKKYLLSINGLGAKSVDCIRLLSLEHKAFPVDVNVARIV 550
Query: 536 VRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFC 595
RL WV LQ E + H ++LYP+++ +Q YLWPRLC +D+ LYELH MITFGKV C
Sbjct: 551 TRLQWVELQCCSE--EFHSVDLYPLMQDVQNYLWPRLCTIDKEKLYELHCLMITFGKVIC 608
Query: 596 TKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANENRTNTQNPAMMINQLPL 655
TK PNCNACP RG+CR++ S +R LP P E+ + E + + ++ N +
Sbjct: 609 TKVDPNCNACPFRGDCRYYKSKL--TRPLLP-PAEEHVRGGEEKTSIVTSERLLSNGSSI 665
Query: 656 PLTHATDLPVGKLEIAVNNCEPIIEEPATPEPERVQVSENDI--EDTFCEDPEEIPT--- 710
P +H + +CEPIIE P +PE E + E + ED D E+I +
Sbjct: 666 P-SHQIEESRTAGRQPSRSCEPIIEMPPSPEYEYEALDEQEYPNEDDLV-DIEDIMSGVH 723
Query: 711 --IKLNMKEFTQTLQNYMQENLELQEGDMSKALVALTAGAASIPAPKLKNVSRLRTEHQV 768
+++N+ T+ N ++ L + + K+K++ RLRTEH
Sbjct: 724 YDVEINLCSNKPTVSNCSWTPNRGKD---------LALSNSQHTSRKMKHIGRLRTEHLA 774
Query: 769 YELPDSHPLLRGMEKREPDDPGRYLLAI 796
Y LPD HPLL E+R P+DP YLL +
Sbjct: 775 YVLPDGHPLLEEFEERVPEDPSPYLLVL 802
>gi|224138760|ref|XP_002326683.1| hypothetical protein POPTRDRAFT_423916 [Populus trichocarpa]
gi|222834005|gb|EEE72482.1| hypothetical protein POPTRDRAFT_423916 [Populus trichocarpa]
Length = 210
Score = 270 bits (689), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 128/212 (60%), Positives = 159/212 (75%), Gaps = 3/212 (1%)
Query: 737 MSKALVALTAGAASIPAPKLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAI 796
MS+ALV++ G + APK+K V+ LRTEHQVYELPD+H +L G++KRE DD YLLAI
Sbjct: 1 MSQALVSV--GTTPLSAPKMKRVTSLRTEHQVYELPDNHEILVGLDKRERDDSVPYLLAI 58
Query: 797 WTPGETANSIQPPESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGS 856
W PGET NS Q PE CSSQ ++CD+KTCF+C +RE + IVRGTILIPCRTA++GS
Sbjct: 59 WQPGETPNSSQQPEKLCSSQ-GSQLCDQKTCFACEGIREQQAGIVRGTILIPCRTALKGS 117
Query: 857 FPLNGTYFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHC 916
FPLNGTYFQVNEVFADH SS PI VPRE LWNL +RT+Y G+S SIF+ L+ + I
Sbjct: 118 FPLNGTYFQVNEVFADHKSSYDPIIVPRELLWNLVKRTLYVGSSTKSIFRDLSLKEIHQN 177
Query: 917 FWRGYVCVRGFDQKSRAPRPLMARLHFPASKL 948
FW G+ CV+ F++ + AP+PL R H ASK+
Sbjct: 178 FWTGFTCVKAFERGTGAPKPLARRFHCSASKM 209
>gi|31296708|gb|AAP46637.1| PG3 [Hordeum vulgare]
Length = 689
Score = 259 bits (662), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 154/389 (39%), Positives = 212/389 (54%), Gaps = 18/389 (4%)
Query: 416 WDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLN 475
WD LR + G D ++WEAV+ A +A I RG + +LA RI+ FL
Sbjct: 251 WDKLREEAYRKGYDNGSKTRITDKVNWEAVQQASFVDVAKCIAGRGQHYVLALRIQAFLT 310
Query: 476 RLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIA 535
R+ +DHGS DL+WLR +P + AK+YL+S GLG KSV+C+RLL+L H AFPVD NV RI
Sbjct: 311 RIKKDHGSFDLDWLRYLPRESAKKYLISINGLGAKSVDCIRLLSLEHKAFPVDVNVPRIV 370
Query: 536 VRLGWVPLQPLPESLQLHLLELYPVLESIQKY-LWPRLCKLDQRTLYELHYQMITFGKVF 594
RL WV LQ E + H ++LY ++ K LWPRLC +D+ LYELH MITFGKV
Sbjct: 371 TRLQWVELQCCSE--EFHSVDLYQLMPGCGKITLWPRLCTIDKEKLYELHCLMITFGKVI 428
Query: 595 CTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANENRTNTQNPAMMINQLP 654
CTK PNCNACP RG+CR++ S +R LP P E+ + E ++ + ++ N
Sbjct: 429 CTKVDPNCNACPFRGDCRYYKSKL--TRPLLP-PAEEHVRGGEEKKSMVTSERLLSNGSC 485
Query: 655 LPLTHATDLPVGKLEIA----VNNCEPIIEEPATPEPERVQVSENDI--EDTFCEDPEEI 708
+P + + A +CEPIIE P +PE E + E + ED D E+I
Sbjct: 486 MPSLQVWQHQIEESRAAGRQPSRSCEPIIEVPPSPEYEYEALDEQEYPNEDDLV-DIEDI 544
Query: 709 PTIKLNMK-EFTQTLQNYMQENLELQEGDMSKALVALTAGAASIPAPKLKNVSRLRTEHQ 767
+ +++ E M N ++ + + LK++ RLRTEH
Sbjct: 545 MSKRVHYDVEINLCSNKPMVSNCSWTPNHGKDWALSNSQHTSR----NLKHIGRLRTEHL 600
Query: 768 VYELPDSHPLLRGMEKREPDDPGRYLLAI 796
Y LPD H LL +E+R P+DP YLL +
Sbjct: 601 AYVLPDGHALLEEVEERVPEDPSPYLLVL 629
>gi|222628678|gb|EEE60810.1| hypothetical protein OsJ_14411 [Oryza sativa Japonica Group]
Length = 1072
Score = 258 bits (660), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 193/573 (33%), Positives = 269/573 (46%), Gaps = 134/573 (23%)
Query: 410 KQNDFD-WDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAG 468
K+ND W SL + G R + D +DWEA+ A + + IK+RG ++ +A
Sbjct: 268 KKNDTSHWHSLYDEARNRG--YIRDDDIPDMVDWEALMNAPFADVVDCIKDRGQHSQMAF 325
Query: 469 RIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAF--- 525
RI FL R+ RDHG++DLEWLR +P KAK+YL S GLG KSV+C+RLL+L H AF
Sbjct: 326 RILAFLIRMKRDHGNIDLEWLRFIPRAKAKQYLHSVIGLGHKSVDCIRLLSLRHRAFPAS 385
Query: 526 ---------PVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLD 576
P+DTN+ I RLGWV L+PLP S + H ++D
Sbjct: 386 YLFSNQIILPIDTNIAHIVTRLGWVQLRPLPSSQEFH--------------------RVD 425
Query: 577 QRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSA 636
+ YELH QMITFGK C KSKPNC ACP EC+++ S F + LALP E + A
Sbjct: 426 K---YELHCQMITFGKAICRKSKPNCGACPFTSECKYYKSQFGRAALALP---EYSQQDA 479
Query: 637 NENRTNTQNPAMMINQLPLPLTHATDLPVGKLEIAVNNCEPIIEEPATPEPE-RVQVSEN 695
++ N +PA + + H + GK +N CEP+IE P TP E R + S+
Sbjct: 480 TKD-ANMDDPAKTYDL--IFKAHQYQIEYGK-NTEMNYCEPVIEIPPTPLHENRGETSDE 535
Query: 696 DIEDT--FCEDPEEIPTIKLNMKEFTQTLQNYMQENLELQEGDMSKALVALTAGAASIP- 752
D E+ F +D E+I +M++ M+ +L + + + T G IP
Sbjct: 536 DDENGYYFDDDMEDIGRHDYDMEDIEHDYD--MEVDLRSAKPTTNTSQAGATPGKEMIPI 593
Query: 753 ------APKLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSI 806
P +K S LRTE+ +PD H +L+ + R P D YLL
Sbjct: 594 NPRAKSTPMVKKFS-LRTEYTACIIPDGHIILKKFDPRVPGDRNPYLLVF---------- 642
Query: 807 QPPESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQV 866
+ DE T V+ TIL
Sbjct: 643 -------------RSFDEHT--------------VKATIL-------------------- 655
Query: 867 NEVFADHDSSLKPINVPREWLWNLPRRT--VYFGTSIPSIFKGLTTEGIQHCFWRGYVCV 924
VFADH SS PI + R+ +W L R+T V+FGT + S+ K GY+C
Sbjct: 656 --VFADHSSSRSPIEINRDLVWELRRQTCIVHFGTRVHSVTK-------------GYICT 700
Query: 925 RGFDQKSRAPRPLMARLHFPASKLNKVPGKADA 957
R FD++++ P+ L +H A+ +NK GK A
Sbjct: 701 REFDRRTKFPKQLCVEIH--ATNVNKDIGKKRA 731
>gi|7406461|emb|CAB85563.1| putative protein [Arabidopsis thaliana]
Length = 555
Score = 251 bits (642), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 192/571 (33%), Positives = 289/571 (50%), Gaps = 55/571 (9%)
Query: 20 SSAFMSLAANFPLNSKQKPCHGEEITSVI-EEPAEYVLDPEDTIEWKEKMSHQPVCDQGS 78
SSAFMSLAA FP + SV+ E+P +L+ + W+EK+ H
Sbjct: 7 SSAFMSLAARFPPKLSSSREDERNVRSVVVEDPEGCILNLNEIPSWQEKVQHP-----SD 61
Query: 79 MTLHGSESSEEREVVSSNNSLESSTSVVSSINESKCKLMNSSEIYPETYNDVLSSPNSLD 138
M + G +S + ++ +NS + N + + N E +VLSS +S D
Sbjct: 62 MEVSGVDSGSKEQLRDCSNS------GIERFNFLEKSIQNLEE-------EVLSSQDSFD 108
Query: 139 SSFAPFADGTISSSNSNSDAGDSSNVPTLNSFNGSNSFVELL--QMVGSTMLHGNYNHRN 196
+ S S S SDA + + +G++ V+ + L GN
Sbjct: 109 PAIFQSCGRVGSCSCSKSDAEFPTTRCETKTVSGTSQSVQTGSPNLSDEICLQGNERPHL 168
Query: 197 GHMSSDENSKDEHSQFQTLESNTQRVKVKD---IDDPKVLSRVSSIPPSSFHPCLTQDLS 253
S D ++ + Q + + KD P+ + + P SS+ C T+
Sbjct: 169 YEGSGDVQKQETTNVAQKKPDLEKTMNWKDSVCFGQPRNDTNWQTTPSSSYEQCATRQPH 228
Query: 254 V-EVESYEMRREETRSS--GISDVTDKIAL--MPEFASQTTDATKLIVAGPEAPRHGNKQ 308
V ++E + M+ E S IS D++ +P + + G P ++
Sbjct: 229 VLDIEDFGMQGEGLGYSWMSISPRVDRVKNKNVPRRFFRQGGSVPREFTGQIIPSTPHEL 288
Query: 309 SRNSMQANKNSIAQHESELFGDSRFAMEPPAHAQKNDLNL---------------PKISS 353
+ + +++ +H+ + + + M +H QK L+L I+
Sbjct: 289 PGMGLSGSSSAVQEHQDDTQHNQQDEMNKASHLQKTFLDLLNSSEECLTRQSSTKQNITD 348
Query: 354 GSI-------DAIESHNALYNRENTQLKSSVSDQNKYDHSFSKELNGIDDATSKSKSTRV 406
G + D ++ + + +N ++S+ S++ + + KE N + +
Sbjct: 349 GCLPRDRTAEDVVDPLSNNSSLQNILVESNSSNKEQTAVEY-KETNA---TILREMKGTL 404
Query: 407 SKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNML 466
+ K+ WDSLR+ VE N G++ER ++ DS+D+EA+R A +++I+ IKERGMNNML
Sbjct: 405 ADGKKPTSQWDSLRKDVEGNEGRQERNKNNMDSIDYEAIRRASISEISEAIKERGMNNML 464
Query: 467 AGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFP 526
A RIKDFL R+V+DHG +DLEWLR+ PPDKAK+YLLS RGLGLKSVECVRLLTLH+LAFP
Sbjct: 465 AVRIKDFLERIVKDHGGIDLEWLRESPPDKAKDYLLSIRGLGLKSVECVRLLTLHNLAFP 524
Query: 527 VDTNVGRIAVRLGWVPLQPLPESLQLHLLEL 557
VDTNVGRIAVR+GWVPLQPLPESLQLHLLEL
Sbjct: 525 VDTNVGRIAVRMGWVPLQPLPESLQLHLLEL 555
>gi|168067245|ref|XP_001785533.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662839|gb|EDQ49643.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1894
Score = 243 bits (621), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 137/274 (50%), Positives = 173/274 (63%), Gaps = 35/274 (12%)
Query: 416 WDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLN 475
W+ LR ++ A R T+D +DW AV+ A V+++A+ IK RG +N LAGR+K FL+
Sbjct: 1218 WEPLRARIVAEQ-TYSRDTLTEDCVDWNAVQQASVHEVADVIKNRGQHNALAGRLKAFLD 1276
Query: 476 RLVRDH-GSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRI 534
R+ RD G +DLEW+R +PP+ AK +LLSFRG+GLKSVEC+RLL LHH +FPVDTNVGRI
Sbjct: 1277 RVHRDQNGVIDLEWIRKLPPEDAKAFLLSFRGVGLKSVECIRLLCLHHPSFPVDTNVGRI 1336
Query: 535 AVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVF 594
AVRLGWVPL+PLPE QLH LYELHY MITFGKVF
Sbjct: 1337 AVRLGWVPLEPLPEETQLH-----------------------LLELYELHYHMITFGKVF 1373
Query: 595 CTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANENRTNTQNPAMMI-NQL 653
CTKSKPNCNACP+R EC+H+AS++AS++L L PE+ N Q+ +
Sbjct: 1374 CTKSKPNCNACPLRSECKHYASSYASAKLLLKWPEKP---------QNKQSTVFALPEHH 1424
Query: 654 PLPLTHATDLPVGKLEIAVNNCEPIIEEPATPEP 687
P P + E+ C PIIEEP +PEP
Sbjct: 1425 PAPQAESVISDSRLTEVQSVACLPIIEEPCSPEP 1458
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 116/272 (42%), Positives = 148/272 (54%), Gaps = 57/272 (20%)
Query: 738 SKALVALTAGAASIPAPKLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDD--------- 788
S+ L+ L A PAPKLKNV RLRT H VYELPD+HPLL M++REPDD
Sbjct: 1603 SQELILLPPCADLAPAPKLKNVQRLRTVHYVYELPDNHPLLFAMDEREPDDPCFYLLAIW 1662
Query: 789 -PGRYL------------LAIWTPGETANSIQP-------------PES----RCSSQEH 818
PG+ L I+ + +SI P PE+ R S +E+
Sbjct: 1663 SPGKLLQFSIKIDNLSNRFEIYLCVLSVSSIAPMLSKLSMSVLLGSPEASAGHRSSIEEY 1722
Query: 819 GKMCDEKTCFSCNSVRESEF------------------QIVRGTILIPCRTAMRGSFPLN 860
T +F + VRGT+LIPC+TAMRG FPLN
Sbjct: 1723 QTKLHSVTIVDEVPATMPKFDDDDARNPFASCDDNHLERTVRGTLLIPCKTAMRGWFPLN 1782
Query: 861 GTYFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRG 920
GTYFQVNEVFADH SSL+PI+VPR LW+L RR VYF T++ ++FK ++ E I+ CF +G
Sbjct: 1783 GTYFQVNEVFADHTSSLQPISVPRTLLWSLRRRFVYFSTAVSNLFKDMSLEEIRCCFQKG 1842
Query: 921 YVCVRGFDQKSRAPRPLMARLHFPASKLNKVP 952
YVC+R FD +R P+ L RLH +K+ K P
Sbjct: 1843 YVCLRAFDLATRQPKILAHRLHQSGAKIVKAP 1874
>gi|218190781|gb|EEC73208.1| hypothetical protein OsI_07289 [Oryza sativa Indica Group]
Length = 1111
Score = 239 bits (611), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 140/362 (38%), Positives = 192/362 (53%), Gaps = 56/362 (15%)
Query: 593 VFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANENRTNTQNPAMMI-- 650
CTK PNC ACP +C+++ S+ A RL+LP P E E + +T P ++
Sbjct: 757 AICTKVSPNCRACPFSAKCKYYNSSLA--RLSLP-PAEGHGHEYGEEQASTATPGRLLLS 813
Query: 651 --------NQLPLPLTHATDLPVGKLEIAVNNCEPIIEEPATPEPERVQ--VSENDIEDT 700
Q+ P ++P G+ I CEPIIE P +PE E + + ED
Sbjct: 814 NDSHIAGFQQVCQPQIK-INMPAGRESIY--KCEPIIEIPPSPEHEYEESPYEQELYEDD 870
Query: 701 FCEDPEEIPTIKLNMKEFTQTLQNYMQENLELQEGDMSKALVALTAGAASIPAPKLKNVS 760
C+ + IP ++ + + +L++ + N + K L + + AS+ KLKN+
Sbjct: 871 LCDIEDTIPELQYDFEIDLCSLKHTV--NNGSWTPNSGKDLALINSQHASVQNKKLKNIG 928
Query: 761 RLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQEHGK 820
RLRTEH Y LPD H +L E R P+DP YLL +
Sbjct: 929 RLRTEHNAYVLPDDHAILEEFEDRVPEDPCPYLLVV------------------------ 964
Query: 821 MCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPI 880
SC S+ V+GTILIPCRTA RG+FPLNGTYFQ +EVFADH SS PI
Sbjct: 965 -------ISC-----SDEHTVKGTILIPCRTATRGNFPLNGTYFQDHEVFADHSSSRSPI 1012
Query: 881 NVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMAR 940
+PRE +WNL R VYFG+SI SI KG T + I+ C+ +GY+CVRGFD+ +R P+P+ A+
Sbjct: 1013 TIPRECIWNLDRCIVYFGSSIQSIMKGQTRQDIEDCYKKGYICVRGFDRNTRYPKPICAK 1072
Query: 941 LH 942
LH
Sbjct: 1073 LH 1074
Score = 112 bits (281), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 77/119 (64%), Gaps = 1/119 (0%)
Query: 409 EKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAG 468
E+++ WD LR + + G K + DS DWEAV A +IAN+I RG + ++A
Sbjct: 640 EEKDTSHWDKLREEAYSKG-YKIKGTGKSDSADWEAVLHAPAVEIANSIAVRGQHYVIAL 698
Query: 469 RIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPV 527
RI+ FL R+ +DHG+ DL+WLR VP + AK YL+S GLG KSV+C+RLL+L H FP
Sbjct: 699 RIQAFLKRVKKDHGNFDLDWLRYVPRESAKNYLISILGLGDKSVDCIRLLSLKHKGFPA 757
>gi|222622899|gb|EEE57031.1| hypothetical protein OsJ_06813 [Oryza sativa Japonica Group]
Length = 1051
Score = 238 bits (607), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 141/362 (38%), Positives = 194/362 (53%), Gaps = 56/362 (15%)
Query: 593 VFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANENRTNTQNPAMMI-- 650
CTK PNC ACP +C+++ S+ A RL+LP P E E + +T P ++
Sbjct: 697 AICTKVSPNCRACPFSAKCKYYNSSLA--RLSLP-PAEGHGHEYGEEQASTATPGRLLLS 753
Query: 651 --------NQLPLPLTHATDLPVGKLEIAVNNCEPIIEEPATPEPERVQ--VSENDIEDT 700
Q+ P ++P G+ I CEPIIE P +PE E + + ED
Sbjct: 754 NDSHIAGFQQVCQPQI-KINMPAGRESIY--KCEPIIEIPPSPEHEYEESPYEQELYEDD 810
Query: 701 FCEDPEEIPTIKLNMKEFTQTLQNYMQENLELQEGDMSKALVALTAGAASIPAPKLKNVS 760
C+ + IP ++ + + +L++ + N + K L + + AS+ +LKN+
Sbjct: 811 LCDIEDTIPELQYDFEIDLCSLKHTV--NNGSWTPNSGKDLALINSQHASVQNKRLKNIG 868
Query: 761 RLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQEHGK 820
RLRTEH Y LPD H +L E R P+DP YLL + + CS
Sbjct: 869 RLRTEHNAYVLPDDHAILEEFEDRVPEDPCPYLLVVIS--------------CS------ 908
Query: 821 MCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPI 880
DE T V+GTILIPCRTA RG+FPLNGTYFQ +EVFADH SS PI
Sbjct: 909 --DEHT--------------VKGTILIPCRTATRGNFPLNGTYFQDHEVFADHSSSRSPI 952
Query: 881 NVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMAR 940
+PRE +WNL R VYFG+SI SI KG T + I+ C+ +GY+CVRGFD+ +R P+P+ A+
Sbjct: 953 TIPRECIWNLDRCIVYFGSSIQSIMKGQTRQDIEDCYKKGYICVRGFDRNTRYPKPICAK 1012
Query: 941 LH 942
LH
Sbjct: 1013 LH 1014
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 77/119 (64%), Gaps = 1/119 (0%)
Query: 409 EKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAG 468
E+++ WD LR + + G K + DS DWEAV A +IAN+I RG + ++A
Sbjct: 580 EEKDTSHWDKLREEAYSKG-YKIKGTGISDSADWEAVLHAPAVEIANSIAVRGQHYVIAL 638
Query: 469 RIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPV 527
RI+ FL R+ +DHG+ DL+WLR VP + AK YL+S GLG KSV+C+RLL+L H FP
Sbjct: 639 RIQAFLKRVKKDHGNFDLDWLRYVPRESAKNYLISILGLGDKSVDCIRLLSLKHKGFPA 697
>gi|326503606|dbj|BAJ86309.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 723
Score = 232 bits (591), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 105/201 (52%), Positives = 135/201 (67%), Gaps = 2/201 (0%)
Query: 416 WDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLN 475
WD LR + G D ++WEAV+ A +A I RG + +LA RI+ FL
Sbjct: 485 WDKLREEAYRKGYDNGSKTRITDKVNWEAVQQASFVDVAKCIAGRGQHYVLALRIQAFLT 544
Query: 476 RLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIA 535
R+ +DHGS DL+WLR +P + AK+YL+S GLG KSV+C+RLL+L H AFPVD NV RI
Sbjct: 545 RIKKDHGSFDLDWLRYLPRESAKKYLISINGLGAKSVDCIRLLSLEHKAFPVDVNVARIV 604
Query: 536 VRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFC 595
RL WV LQ E + H ++LYP+++ +Q YLWPRLC +D+ LYELH MITFGKV C
Sbjct: 605 TRLQWVELQCCSE--EFHSVDLYPLMQDVQSYLWPRLCTIDKEKLYELHCLMITFGKVIC 662
Query: 596 TKSKPNCNACPMRGECRHFAS 616
TK PNCNACP RG+CR++ S
Sbjct: 663 TKVDPNCNACPFRGDCRYYKS 683
>gi|224068969|ref|XP_002326243.1| predicted protein [Populus trichocarpa]
gi|222833436|gb|EEE71913.1| predicted protein [Populus trichocarpa]
Length = 134
Score = 221 bits (562), Expect = 2e-54, Method: Composition-based stats.
Identities = 100/110 (90%), Positives = 107/110 (97%)
Query: 438 DSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKA 497
DSLDWEAVRCADVN+IANTIKERGMNN+LA RIK+ LNRLVR+HGS+DLEWLRD+PPDKA
Sbjct: 2 DSLDWEAVRCADVNEIANTIKERGMNNILAERIKNLLNRLVREHGSIDLEWLRDIPPDKA 61
Query: 498 KEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLP 547
KEYLLS RGLGLKSVEC+RLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLP
Sbjct: 62 KEYLLSIRGLGLKSVECIRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLP 111
>gi|14021063|dbj|BAB47587.1| putative FPPsynthase1 [Euphorbia tirucalli]
Length = 119
Score = 221 bits (562), Expect = 2e-54, Method: Composition-based stats.
Identities = 99/108 (91%), Positives = 105/108 (97%)
Query: 438 DSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKA 497
D LDWEAVRCADV++IANTIKERGMNN+LA RIKDFLNRLVR+HG++DLEWLRDVPPDKA
Sbjct: 12 DYLDWEAVRCADVDEIANTIKERGMNNVLAKRIKDFLNRLVREHGNIDLEWLRDVPPDKA 71
Query: 498 KEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQP 545
KEYLLS RGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQP
Sbjct: 72 KEYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQP 119
>gi|224100671|ref|XP_002311969.1| predicted protein [Populus trichocarpa]
gi|222851789|gb|EEE89336.1| predicted protein [Populus trichocarpa]
Length = 108
Score = 202 bits (514), Expect = 7e-49, Method: Composition-based stats.
Identities = 92/108 (85%), Positives = 101/108 (93%)
Query: 438 DSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKA 497
DSLD+EAVRCA VN+I+ IKERGMN +LA RI++FLNRLVR+HGS+DLEWLRDVPP KA
Sbjct: 1 DSLDYEAVRCAGVNEISEAIKERGMNKILAERIQEFLNRLVREHGSIDLEWLRDVPPGKA 60
Query: 498 KEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQP 545
K+YLLS RGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQP
Sbjct: 61 KDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQP 108
>gi|2911056|emb|CAA17566.1| hypothetical protein [Arabidopsis thaliana]
gi|7270355|emb|CAB80123.1| hypothetical protein [Arabidopsis thaliana]
Length = 917
Score = 202 bits (514), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 146/427 (34%), Positives = 198/427 (46%), Gaps = 125/427 (29%)
Query: 398 TSKSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTI 457
T+K K+ + + DW++LRR G RPE DS++W VR + N + TI
Sbjct: 554 TAKRKNEKTGIIEDEIVDWNNLRRMYTKEGS---RPEMHMDSVNWSDVRLSGQNVLETTI 610
Query: 458 KERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRL 517
K+RG FR L R+
Sbjct: 611 KKRG-----------------------------------------QFRILS------ERI 623
Query: 518 LTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQ 577
L VDTNVGRIAVRLG VPL+PLP +Q+H Q
Sbjct: 624 L--------VDTNVGRIAVRLGLVPLEPLPNGVQMH-----------------------Q 652
Query: 578 RTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSAN 637
YELHYQMITFGKVFCTK+ PNCNACPM+ EC++FASA+ SS++ L PEEK
Sbjct: 653 LFEYELHYQMITFGKVFCTKTIPNCNACPMKSECKYFASAYVSSKVLLESPEEKM----- 707
Query: 638 ENRTNTQNPAMMINQLPLPLTHATDLPVGKL-------EIAVNNC-------EPIIEEPA 683
P +N H+ D+ V E + C +P++E P+
Sbjct: 708 ------HEPNTFMN------AHSQDVAVDMTSNINLVEECVSSGCSDQAICYKPLVEFPS 755
Query: 684 TPEPERVQVSEN-DIEDT----FCEDPEEIPTIKLNMKEFTQTLQNYMQENLELQEGD-- 736
+P R ++ E+ DIED + +P I ++ +++++ + + + D
Sbjct: 756 SP---RAEIPESTDIEDVPFMNLYQSYASVPKIDFDLDALKKSVEDALVISGRMSSSDEE 812
Query: 737 MSKALVALTAGAASIPAP---KLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYL 793
+SKALV T A IP K+K +RLRTEH VY LPD+H LL E+R+ DDP YL
Sbjct: 813 ISKALVIPTPENACIPIKPPRKMKYYNRLRTEHVVYVLPDNHELLHDFERRKLDDPSPYL 872
Query: 794 LAIWTPG 800
LAIW PG
Sbjct: 873 LAIWQPG 879
>gi|297723055|ref|NP_001173891.1| Os04g0358000 [Oryza sativa Japonica Group]
gi|255675367|dbj|BAH92619.1| Os04g0358000 [Oryza sativa Japonica Group]
Length = 1310
Score = 199 bits (507), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 176/581 (30%), Positives = 250/581 (43%), Gaps = 137/581 (23%)
Query: 410 KQNDFD-WDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAG 468
K+ND W SL + G R + D +DWEA+ A + + IK+RG ++ +A
Sbjct: 464 KKNDTSHWHSLYDEARNRG--YIRDDDIPDMVDWEALMNAPFADVVDCIKDRGQHSQMAF 521
Query: 469 RIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVD 528
RI FL R+ RDHG++DLEWLR +P KA R+ A
Sbjct: 522 RILAFLIRMKRDHGNIDLEWLRFIPRAKANYK--------------ARMGATPSFAIISG 567
Query: 529 TNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRT-LYELHYQM 587
+ GR +Q +P L R+C +QRT YELH QM
Sbjct: 568 VSSGRQQNSKFSTLIQAMPGYLSFD-----------------RICLTNQRTNRYELHCQM 610
Query: 588 ITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANENRTNTQNPA 647
ITFGK C KSKPNC ACP EC+++ S F + LALP E + A ++ N +PA
Sbjct: 611 ITFGKAICRKSKPNCGACPFTSECKYYKSQFGRAALALP---EYSQQDATKD-ANMDDPA 666
Query: 648 MMINQLPLPLTHATDLPVGKLEIAVNNCEPIIEEPATPEPE-RVQVSENDIEDT--FCED 704
+ + H + GK +N CEP+IE P TP E R + S+ D E+ F +D
Sbjct: 667 KTYDL--IFKAHQYQIEYGK-NTEMNYCEPVIEIPPTPLHENRGETSDEDDENGYYFDDD 723
Query: 705 PEEIPTIKLNMKEFTQTLQNYMQENLELQEGDMSKALVALTAGAASIP-------APKLK 757
E+I +M++ M+ +L + + + T G IP P +K
Sbjct: 724 MEDIGRHDYDMEDIEHDYD--MEVDLRSAKPTTNTSQAGATPGKEMIPINPRAKSTPMVK 781
Query: 758 NVSRLRTEH-----------------QVYE--LPDSHPLLRGMEKREPDDPGRYLLAIWT 798
S LRTE+ V+ +PD H +L+ + R P D YLL
Sbjct: 782 KFS-LRTEYTAIFYSWALIILVFFTIAVFRCIIPDGHIILKKFDPRVPGDRNPYLLVF-- 838
Query: 799 PGETANSIQPPESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFP 858
+ DE T V+ TIL
Sbjct: 839 ---------------------RSFDEHT--------------VKATIL------------ 851
Query: 859 LNGTYFQVNEVFADHDSSLKPINVPREWLWNLPRRT--VYFGTSIPSIFKGLTTEGIQHC 916
VFADH SS PI + R+ +W L R+T V+FGT + S+ KG T EG+ H
Sbjct: 852 ----------VFADHSSSRSPIEINRDLVWELRRQTCIVHFGTRVHSVTKGQTREGLYHF 901
Query: 917 FWRGYVCVRGFDQKSRAPRPLMARLHFPASKLNKVPGKADA 957
+ GY+C R FD++++ P+ L +H A+ +NK GK A
Sbjct: 902 YNEGYICTREFDRRTKFPKQLCVEIH--ATNVNKDIGKKRA 940
>gi|168050578|ref|XP_001777735.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670836|gb|EDQ57397.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1992
Score = 193 bits (490), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 101/210 (48%), Positives = 141/210 (67%), Gaps = 27/210 (12%)
Query: 359 IESHNALYNRENTQLKSSVS-------DQNKYDHSFSKELNGIDDATSKSKSTRVSKEKQ 411
IE L + +N + S +S + Y+H F+ +LN ++ K+T
Sbjct: 1319 IEKRRKLKSSKNARHVSKISVKELTGGQRATYEHGFNYKLN------AEMKTT------- 1365
Query: 412 NDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIK 471
W++LR +V ++ +K+ DS+DWEAVR ADV +A+ IKERGMNN+L+GRIK
Sbjct: 1366 ----WEALRAKVLSDNFEKDY--SISDSVDWEAVRLADVAVVADLIKERGMNNILSGRIK 1419
Query: 472 DFLNRLVRDH-GSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTN 530
L+R+ RD GS+DLEW+R + P ++ +L++ RGLG+KSVEC+RLLTLHH +FPVDTN
Sbjct: 1420 SLLDRIYRDQDGSLDLEWIRKLSPIDSQNFLINVRGLGIKSVECIRLLTLHHPSFPVDTN 1479
Query: 531 VGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
VGRI VRLGWVPL+PLPE ++LHLLE+Y V
Sbjct: 1480 VGRILVRLGWVPLEPLPEKIRLHLLEMYFV 1509
Score = 189 bits (479), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 123/287 (42%), Positives = 145/287 (50%), Gaps = 86/287 (29%)
Query: 738 SKALVALTAGAASIPAPKLKNVSRLRTEHQVY---------------------------- 769
S+ L+ L AAS PAP LK+V RLRT H VY
Sbjct: 1708 SQELILLPPYAASFPAPLLKSVQRLRTIHYVYVPLHGQFLSDFEIEQNVQVRYTVQLSFL 1767
Query: 770 ------------ELPDSHPLLR--GMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSS 815
ELPD HPLL M+KR+ DDP YLLAIW E ++
Sbjct: 1768 ALIHFNLVDCSYELPDHHPLLHQAKMDKRDSDDPCLYLLAIWNADEVPAAMP-------- 1819
Query: 816 QEHGKMCDEKTC---FSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFAD 872
K+ D+ SCNS +E V GTIL+PCRTA +GSFPLNGTYFQVNEVFAD
Sbjct: 1820 ----KISDDDASNPFASCNSGQE-----VPGTILVPCRTANKGSFPLNGTYFQVNEVFAD 1870
Query: 873 HDSSLKPINVPREWLWNLPRRTVYFGTSIPSIF-------------KGLTTEG------- 912
H SS P+ V R +WNL R+ VYFGTS+ SIF K LT G
Sbjct: 1871 HASSHDPLRVSRTLMWNLKRKFVYFGTSVTSIFRDLKKVRLFASSQKDLTRNGIETDMSQ 1930
Query: 913 --IQHCFWRGYVCVRGFDQKSRAPRPLMARLHFPASKLNKVPGKADA 957
IQ CF +GYVCVR FDQ +R P+PL RLH A+K+ V +A A
Sbjct: 1931 GEIQCCFKKGYVCVRAFDQATRKPKPLAPRLHQSAAKI--VAARAGA 1975
>gi|357445861|ref|XP_003593208.1| Transcriptional activator DEMETER [Medicago truncatula]
gi|355482256|gb|AES63459.1| Transcriptional activator DEMETER [Medicago truncatula]
Length = 251
Score = 177 bits (448), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 106/248 (42%), Positives = 139/248 (56%), Gaps = 42/248 (16%)
Query: 675 CEPIIEEPATPEPERVQ-----------VSENDIEDTFCEDPEEIPTIKLNMKE--FTQT 721
CEPI+E PA+PE E + V END ED E++ T+ L+++ F++
Sbjct: 30 CEPIVEMPASPELESTELIDDEKMYYDYVVEND------EDIEDMMTLNLSIESSCFSKI 83
Query: 722 LQNYMQENLELQEGDMS--KALVALTAGAASIPAPKLKNVSRLRTEHQVYELPDSHPLLR 779
N QE + DM+ +LVAL A K+KN SRL+TE VY L D+HPLL
Sbjct: 84 CDNSFQEF----DHDMTAPTSLVALHPNATINRLSKMKNASRLKTERLVYVLTDNHPLLT 139
Query: 780 GMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQEHGKMCDEKTCFSCNSVRESEFQ 839
RE DDP YLL IW P E +S DE + + S+ +
Sbjct: 140 EYPPREHDDPSPYLLVIWLPDELESS-----------------DESSKTDLHEEESSQTK 182
Query: 840 IVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGT 899
V GT+LIPCRTAM+ FPLNGTYFQVNEVFAD+ S ++PINVPR+W+W+L +R YFGT
Sbjct: 183 TVLGTLLIPCRTAMKACFPLNGTYFQVNEVFADYASMIQPINVPRQWIWSLEKRITYFGT 242
Query: 900 SIPSIFKG 907
+I +G
Sbjct: 243 GTSTITRG 250
>gi|224138764|ref|XP_002326684.1| DNA glycosylase [Populus trichocarpa]
gi|222834006|gb|EEE72483.1| DNA glycosylase [Populus trichocarpa]
Length = 121
Score = 174 bits (442), Expect = 2e-40, Method: Composition-based stats.
Identities = 79/119 (66%), Positives = 95/119 (79%)
Query: 438 DSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKA 497
DS+DWEAVR A+ +K+A+ I+ RG ++AGRIK FL+R+V H S+DLEWLR PPD
Sbjct: 2 DSVDWEAVRQAETSKVASIIEGRGQQTIIAGRIKQFLDRVVDMHKSIDLEWLRYAPPDDV 61
Query: 498 KEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLE 556
K+YLL F GLGLKSVECVRLL+L +AFPVD NV RIAVRLGWVPL+ LP SLQ HL+E
Sbjct: 62 KDYLLEFMGLGLKSVECVRLLSLQQVAFPVDVNVARIAVRLGWVPLKALPGSLQFHLIE 120
>gi|412985467|emb|CCO18913.1| predicted protein [Bathycoccus prasinos]
Length = 2056
Score = 170 bits (431), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 83/179 (46%), Positives = 111/179 (62%), Gaps = 4/179 (2%)
Query: 436 TKDSLDWEAV-RCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPP 494
+D +DW V A ++ I I+ RGM++MLA RIK L R++ + G + LE+LR+
Sbjct: 1121 VRDCVDWHRVLHEASIDDIIECIRCRGMHSMLAHRIKKILRRVLDERGVLSLEFLREAST 1180
Query: 495 DKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHL 554
++A YL G+G K+ CV LL+L + FPVD NVGRI RLGWVPL+ + +L L
Sbjct: 1181 EEANAYLNEIEGMGAKTSACVNLLSLENRDFPVDVNVGRIMARLGWVPLE---DDFKLEL 1237
Query: 555 LELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
LE Y ES+ ++L RL D LYELHY MIT GKVFC K PNC +CPM +C +
Sbjct: 1238 LEQYAPEESVYEFLSERLNTFDVTMLYELHYHMITLGKVFCAKRDPNCASCPMNSDCEY 1296
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 55/97 (56%)
Query: 841 VRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTS 900
++ + A + SFPL+GTYFQVNEVF D S+ KP++V E L P+ G S
Sbjct: 1757 IKCVFFVTALCACKRSFPLHGTYFQVNEVFLDLRSAAKPVSVDIETLKTSPKIVTLLGAS 1816
Query: 901 IPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPL 937
I S+ +G+T + F +CVR +++++ PR L
Sbjct: 1817 IGSVTRGMTRTEVTRLFNHQVLCVRAWERRTGYPREL 1853
>gi|357452085|ref|XP_003596319.1| Repressor of silencing [Medicago truncatula]
gi|355485367|gb|AES66570.1| Repressor of silencing [Medicago truncatula]
Length = 684
Score = 170 bits (431), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 81/122 (66%), Positives = 92/122 (75%), Gaps = 19/122 (15%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
KI + IKERGMNN LA R+++FL RLV DHGS+DLEWLRDVPPD+ KEYL S
Sbjct: 546 KIVDAIKERGMNNKLAKRVQNFLIRLVDDHGSIDLEWLRDVPPDQTKEYLSS-------- 597
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
+AFP+DTNVGRIAVRLGWVPL PLPESLQLHLLELYP++ SIQK+LW R
Sbjct: 598 -----------IAFPIDTNVGRIAVRLGWVPLHPLPESLQLHLLELYPLVNSIQKHLWAR 646
Query: 572 LC 573
LC
Sbjct: 647 LC 648
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/135 (51%), Positives = 88/135 (65%), Gaps = 15/135 (11%)
Query: 405 RVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNN 464
R S + FD DSLR +A GK+E+ E+T DS+DW+ VRC D KIA+ IKERG+NN
Sbjct: 91 RKSNAGKEQFDKDSLRLNAQAKAGKREKTENTMDSVDWDDVRCVDCKKIADAIKERGINN 150
Query: 465 MLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLA 524
LA I++FL RLV DHG +DLE + + LGLKS +CV+LLTLH A
Sbjct: 151 KLAKHIQNFLIRLVDDHGRIDLECVAE---------------LGLKSAKCVQLLTLHQPA 195
Query: 525 FPVDTNVGRIAVRLG 539
FPV TN+GRI++ LG
Sbjct: 196 FPVATNIGRISIHLG 210
Score = 123 bits (308), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 68/148 (45%), Positives = 87/148 (58%), Gaps = 26/148 (17%)
Query: 534 IAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKV 593
I + GWVPLQPLPESLQLHLLEL P++ IQK+LW RL L Y I+ G +
Sbjct: 336 IQIVGGWVPLQPLPESLQLHLLELNPLVNFIQKHLWARLSTLP--------YDYISKGLM 387
Query: 594 FCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANENRTNTQNPAMMINQL 653
+ + K NCNACPMR +CRHFASAFAS+ L P PE+ + A+ N + P ++++Q
Sbjct: 388 Y--QKKTNCNACPMRADCRHFASAFASTTLMFPRPEQ-CFIGASGNSVTDKIPPVVMSQ- 443
Query: 654 PLPLTHATDLPVGKLEIAVNNCEPIIEE 681
L VN C+PIIEE
Sbjct: 444 --------------LHFKVNICQPIIEE 457
>gi|224126427|ref|XP_002329551.1| hypothetical protein POPTRDRAFT_783774 [Populus trichocarpa]
gi|222870260|gb|EEF07391.1| hypothetical protein POPTRDRAFT_783774 [Populus trichocarpa]
Length = 121
Score = 169 bits (429), Expect = 6e-39, Method: Composition-based stats.
Identities = 76/119 (63%), Positives = 92/119 (77%)
Query: 438 DSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKA 497
DS+DWEAVR A+ ++IA+ I+ RG ++AG IK FLNR+V H S+DLEWLR PPD
Sbjct: 2 DSVDWEAVRQAETSEIASIIEARGQQTIIAGSIKGFLNRVVEMHKSIDLEWLRYAPPDDV 61
Query: 498 KEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLE 556
K+YLL F GLGLKSVECVRLL++ H+AFPVD NV I RLGW PL+PLP SLQ HL+E
Sbjct: 62 KDYLLEFTGLGLKSVECVRLLSIQHVAFPVDINVAWIVFRLGWAPLKPLPGSLQFHLIE 120
>gi|384251193|gb|EIE24671.1| hypothetical protein COCSUDRAFT_62092 [Coccomyxa subellipsoidea
C-169]
Length = 1568
Score = 151 bits (381), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/128 (56%), Positives = 82/128 (64%), Gaps = 3/128 (2%)
Query: 486 LEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQP 545
LEWLRDV D A++YL+ GLG KSV CV LL L FPVDTNVGRI RLGW+PL
Sbjct: 722 LEWLRDVAEDDARQYLMGVMGLGRKSVACVMLLALCKHDFPVDTNVGRICARLGWIPLD- 780
Query: 546 LPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNAC 605
L L+ Y + KYL RL D TLYELHYQMIT GKVFC+K PNC AC
Sbjct: 781 --AEEALEDLDRYAPEPEVHKYLHSRLMHFDTETLYELHYQMITLGKVFCSKKDPNCRAC 838
Query: 606 PMRGECRH 613
P+R +C +
Sbjct: 839 PLRPQCEY 846
Score = 110 bits (275), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/94 (53%), Positives = 61/94 (64%)
Query: 844 TILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPS 903
+L+PCRTAMRG FPLNGTYFQVNEVF D S PI V E + RR VYFGTS+ +
Sbjct: 1282 AVLVPCRTAMRGRFPLNGTYFQVNEVFLDETSLRSPIQVADEVVGAWVRRPVYFGTSVAA 1341
Query: 904 IFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPL 937
+ +G+ + F G +CVR FD +R PRPL
Sbjct: 1342 VCRGMGQSEVTRFFLDGLLCVRAFDPITRFPRPL 1375
>gi|413949116|gb|AFW81765.1| hypothetical protein ZEAMMB73_889003 [Zea mays]
Length = 107
Score = 150 bits (380), Expect = 3e-33, Method: Composition-based stats.
Identities = 67/93 (72%), Positives = 77/93 (82%)
Query: 853 MRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEG 912
M GSFPLNGTYFQVNEVF++H SS PI+V RE LWNL R V+FGTS+P+IF+GLTTE
Sbjct: 1 MGGSFPLNGTYFQVNEVFSNHRSSHNPIHVKREQLWNLQRCMVFFGTSVPTIFRGLTTEE 60
Query: 913 IQHCFWRGYVCVRGFDQKSRAPRPLMARLHFPA 945
IQHCFWRG VCVRGFD+++RAPRPL LH A
Sbjct: 61 IQHCFWRGVVCVRGFDRETRAPRPLCPHLHIVA 93
>gi|255072753|ref|XP_002500051.1| DNA glycosylase [Micromonas sp. RCC299]
gi|226515313|gb|ACO61309.1| DNA glycosylase [Micromonas sp. RCC299]
Length = 2192
Score = 147 bits (370), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 83/187 (44%), Positives = 110/187 (58%), Gaps = 4/187 (2%)
Query: 432 RPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDH-GSVDLEWLR 490
R E+T D +DW AV A + + I+ RGM+ M A RI+ L R+ + G + LE+LR
Sbjct: 1387 RSENTYDMIDWRAVMNAPLGDVVECIRCRGMHFMQARRIQRILRRIHDERKGELSLEFLR 1446
Query: 491 DVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESL 550
+ + A+ YLLS G G+K+V C+ LL+L FPVD NVGRI RLGWVPL+
Sbjct: 1447 NCTVEIARGYLLSLEGFGVKTVSCITLLSLFRADFPVDVNVGRIMARLGWVPLE---TEQ 1503
Query: 551 QLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGE 610
L L Y ++ +L RL +TL+ELHY MIT GKVFC K PNC ACP+R
Sbjct: 1504 ALEELAEYAPEPAVYTFLRERLNSFGLQTLFELHYHMITLGKVFCEKRTPNCRACPLRDM 1563
Query: 611 CRHFASA 617
C + +S
Sbjct: 1564 CEYASSG 1570
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 102/207 (49%), Gaps = 28/207 (13%)
Query: 754 PKLKNVSRLRTEHQVYELPDSHPLLRGMEKREPD-DPGRYL-LAIWTPGETANSIQPPES 811
P N+SR+R E + + L S + + +R P+ D G YL + P TA +
Sbjct: 1804 PPPPNMSRIRHELKAWSL-TSDLVPASLLERAPELDVGYYLAVRCGLPSATA------AA 1856
Query: 812 RCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFA 871
R +S+ G+ ++V T+++PCR AM G FPL+GTYFQ NEVF
Sbjct: 1857 RIASESAGR------------------KMVPLTVMVPCRAAMNGKFPLHGTYFQTNEVFL 1898
Query: 872 DHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKS 931
D +++++P V L LP +VY G+S+ SI +G++ + F VCVR ++ +
Sbjct: 1899 DAETAVRPKLVAASELETLPTVSVYLGSSVASICRGMSRAEVASSFANRAVCVRSWEPHT 1958
Query: 932 RAPRPLMARLHFPASKLNKVPGKADAD 958
PRPL R P L G A D
Sbjct: 1959 GHPRPL-PRWACPFIPLGASLGPAPGD 1984
>gi|38346441|emb|CAE04435.2| OSJNBa0018J19.2 [Oryza sativa Japonica Group]
gi|116309571|emb|CAH66631.1| OSIGBa0105P02.5 [Oryza sativa Indica Group]
Length = 798
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 119/372 (31%), Positives = 168/372 (45%), Gaps = 55/372 (14%)
Query: 410 KQNDFD-WDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAG 468
K+ND W SL + G R + D +DWEA+ A + + IK+RG ++ +A
Sbjct: 464 KKNDTSHWHSLYDEARNRG--YIRDDDIPDMVDWEALMNAPFADVVDCIKDRGQHSQMAF 521
Query: 469 RIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVD 528
RI FL R+ RDHG++DLEWLR +P KA R+ A
Sbjct: 522 RILAFLIRMKRDHGNIDLEWLRFIPRAKANYK--------------ARMGATPSFAIISG 567
Query: 529 TNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRT-LYELHYQM 587
+ GR +Q +P L R+C +QRT YELH QM
Sbjct: 568 VSSGRQQNSKFSTLIQAMPGYLSFD-----------------RICLTNQRTNRYELHCQM 610
Query: 588 ITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANENRTNTQNPA 647
ITFGK C KSKPNC ACP EC+++ S F + LALP E + A ++ N +PA
Sbjct: 611 ITFGKAICRKSKPNCGACPFTSECKYYKSQFGRAALALP---EYSQQDATKD-ANMDDPA 666
Query: 648 MMINQLPLPLTHATDLPVGKLEIAVNNCEPIIEEPATPEPE-RVQVSENDIED--TFCED 704
+ + H + GK +N CEP+IE P TP E R + S+ D E+ F +D
Sbjct: 667 KTYDL--IFKAHQYQIEYGK-NTEMNYCEPVIEIPPTPLHENRGETSDEDDENGYYFDDD 723
Query: 705 PEEIPTIKLNMKEFTQTLQNYMQENLELQEGDMSKALVALTAGAASIP-------APKLK 757
E+I +M++ M+ +L + + + T G IP P +K
Sbjct: 724 MEDIGRHDYDMEDIEHDYD--MEVDLRSAKPTTNTSQAGATPGKEMIPINPRAKSTPMVK 781
Query: 758 NVSRLRTEHQVY 769
S LRTE+ Y
Sbjct: 782 KFS-LRTEYTAY 792
>gi|308803847|ref|XP_003079236.1| DEMETER protein (ISS) [Ostreococcus tauri]
gi|116057691|emb|CAL53894.1| DEMETER protein (ISS), partial [Ostreococcus tauri]
Length = 856
Score = 140 bits (353), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 67/138 (48%), Positives = 84/138 (60%), Gaps = 3/138 (2%)
Query: 476 RLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIA 535
R++ G + LE+LR+ P D+A+EYLL+ G+G+K+ CV LL LH FPVD NVGRI
Sbjct: 243 RVMAQRGCLSLEFLREAPTDEAREYLLALDGMGVKTTSCVLLLALHRTDFPVDVNVGRIM 302
Query: 536 VRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFC 595
RLGWVPL+ L L Y ++ +L RL LYELHY MIT GKVFC
Sbjct: 303 ARLGWVPLE---SETALEELAQYAPEPAVYTFLRKRLNSFGIDMLYELHYHMITLGKVFC 359
Query: 596 TKSKPNCNACPMRGECRH 613
K PNC ACP+R C +
Sbjct: 360 GKRLPNCGACPLRDICEY 377
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 60/107 (56%)
Query: 831 NSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWNL 890
S+ E + + IL PC ++M FPL+GTYFQ NEVF D SS+ P+ + + L
Sbjct: 604 TSIDEITKEKIAVAILTPCASSMGNKFPLHGTYFQTNEVFLDEKSSVVPLKILKGALVKC 663
Query: 891 PRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPL 937
R V GTSI SI +G++ + F +CVR +++ ++ P PL
Sbjct: 664 RRVRVLVGTSIGSITRGMSRAQVTAAFASQRICVRSWNRVTKQPGPL 710
>gi|218194662|gb|EEC77089.1| hypothetical protein OsI_15494 [Oryza sativa Indica Group]
Length = 1253
Score = 139 bits (351), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 156/562 (27%), Positives = 224/562 (39%), Gaps = 159/562 (28%)
Query: 410 KQNDFD-WDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAG 468
K+ND W SL + G R + D +DWEA+ A + + IK+RG ++ +A
Sbjct: 467 KKNDTSHWHSLYDEARNRG--YIRDDDIPDMVDWEALMNAPFADVVDCIKDRGQHSQMAF 524
Query: 469 RIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVD 528
RI FL R+ RDHG++DLEWLR +P KA R+ A
Sbjct: 525 RILAFLIRMKRDHGNIDLEWLRFIPRAKANYK--------------ARMGATPSFAIISG 570
Query: 529 TNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRT-LYELHYQM 587
+ GR +Q +P L R+C +QRT YELH QM
Sbjct: 571 VSSGRQQNSKFSTLIQAMPGYLSFD-----------------RICLTNQRTNRYELHCQM 613
Query: 588 ITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANENRTNTQNPA 647
ITFGK + LALP E + A ++ N +PA
Sbjct: 614 ITFGK----------------------------AALALP---EYSQQDATKD-ANMDDPA 641
Query: 648 MMINQLPLPLTHATDLPVGKLEIAVNNCEPIIEEPATPEPE-RVQVSENDIEDT--FCED 704
+ + H + GK +N CEP+IE P TP E R + S+ D E+ F +D
Sbjct: 642 KTYDL--IFKAHQYQIEYGK-NTEMNYCEPVIEIPPTPLHENRGETSDEDDENGYYFDDD 698
Query: 705 PEEIPTIKLNMKEFTQTLQNYMQENLELQEGDMSKALVALTAGAASIP-------APKLK 757
E+I +M++ M+ +L + + + T G IP P +K
Sbjct: 699 MEDIGRHDYDMEDIEHDYD--MEVDLRSAKPTTNTSQAGATPGKEMIPINPRAKSTPMVK 756
Query: 758 NVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQE 817
S LRTE+ +PD H +L+ + R P D YLL
Sbjct: 757 KFS-LRTEYTACIIPDGHIILKKFDPRVPGDRNPYLLVF--------------------- 794
Query: 818 HGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSL 877
+ DE T V+ TIL VFADH SS
Sbjct: 795 --RSFDEHT--------------VKATIL----------------------VFADHSSSR 816
Query: 878 KPINVPREWLWNLPRRT--VYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPR 935
PI + R+ +W L R+T V+FGT + S+ K GY+C R FD++++ P+
Sbjct: 817 SPIEINRDLVWELRRQTCIVHFGTRVHSVTK-------------GYICTREFDRRTKFPK 863
Query: 936 PLMARLHFPASKLNKVPGKADA 957
L +H A+ +NK GK A
Sbjct: 864 QLCVEIH--ATNVNKDIGKKRA 883
>gi|145346471|ref|XP_001417710.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577938|gb|ABO96003.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 107
Score = 115 bits (289), Expect = 8e-23, Method: Composition-based stats.
Identities = 56/107 (52%), Positives = 70/107 (65%)
Query: 438 DSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKA 497
D +DW AV A + +I I+ RGM+ MLA RIK L R++ G + LE+LRD P A
Sbjct: 1 DQVDWYAVLDAPLVEIVKCIRCRGMHWMLARRIKGILKRVMAQRGCLSLEFLRDTPTRDA 60
Query: 498 KEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQ 544
EYLL+ G+G+K+ CV LL LH FPVD NVGRI RLGWVPL+
Sbjct: 61 NEYLLALDGMGVKTTSCVLLLALHRTDFPVDVNVGRIMARLGWVPLE 107
>gi|303277163|ref|XP_003057875.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460532|gb|EEH57826.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 108
Score = 114 bits (286), Expect = 2e-22, Method: Composition-based stats.
Identities = 55/108 (50%), Positives = 73/108 (67%), Gaps = 1/108 (0%)
Query: 438 DSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDH-GSVDLEWLRDVPPDK 496
D +DW AV A + + I+ RGM+ MLA RIK+ L R+ + G++ LE+LRDVP +
Sbjct: 1 DLIDWNAVLKAPIEDVVECIRCRGMHFMLARRIKNLLRRIASERDGALSLEFLRDVPTEL 60
Query: 497 AKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQ 544
A+ YLLS G G+K+V C+ LL L+ FPVD NVGRI RLGWVPL+
Sbjct: 61 ARGYLLSLEGYGVKTVSCILLLALYRADFPVDVNVGRIMARLGWVPLE 108
>gi|302856195|ref|XP_002959522.1| hypothetical protein VOLCADRAFT_36766 [Volvox carteri f.
nagariensis]
gi|300254966|gb|EFJ39413.1| hypothetical protein VOLCADRAFT_36766 [Volvox carteri f.
nagariensis]
Length = 108
Score = 114 bits (285), Expect = 2e-22, Method: Composition-based stats.
Identities = 53/108 (49%), Positives = 73/108 (67%)
Query: 437 KDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDK 496
+D +DWEAVR A +A+ I+ RGM+ MLA RIK FLN++ ++ LEWLR+ ++
Sbjct: 1 EDIVDWEAVRTAPDELLADLIRCRGMHVMLARRIKAFLNQVRTGRSTISLEWLRNANVEE 60
Query: 497 AKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQ 544
A YL++ GLG KSV C+ LL LH FPVD NV R+ RLGW+P++
Sbjct: 61 ATNYLMAVEGLGRKSVACIVLLALHGKEFPVDINVARVFARLGWIPIE 108
>gi|297719745|ref|NP_001172234.1| Os01g0217900 [Oryza sativa Japonica Group]
gi|255673002|dbj|BAH90964.1| Os01g0217900, partial [Oryza sativa Japonica Group]
Length = 70
Score = 112 bits (280), Expect = 1e-21, Method: Composition-based stats.
Identities = 50/69 (72%), Positives = 56/69 (81%), Gaps = 7/69 (10%)
Query: 895 VYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMARLHFPASKLNK---- 950
VYFGTSIP+IFKGLTTE IQHCFWRG+VCVRGFD+ SRAPRPL ARLHFPASK+ +
Sbjct: 1 VYFGTSIPTIFKGLTTEEIQHCFWRGFVCVRGFDRTSRAPRPLYARLHFPASKITRNKKS 60
Query: 951 ---VPGKAD 956
PG+ D
Sbjct: 61 AGSAPGRDD 69
>gi|86605550|ref|YP_474313.1| base excision DNA repair protein [Synechococcus sp. JA-3-3Ab]
gi|86554092|gb|ABC99050.1| base excision DNA repair protein, HhH-GPD family [Synechococcus sp.
JA-3-3Ab]
Length = 222
Score = 103 bits (258), Expect = 3e-19, Method: Composition-based stats.
Identities = 61/170 (35%), Positives = 86/170 (50%), Gaps = 18/170 (10%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYL 501
WEAV AD K+A I+ G+ + A RI++ L +V+ GS+ L++LRD+ A YL
Sbjct: 63 WEAVLAADPTKLAQVIRPGGLAQLKAARIQEILAAIVKRQGSLSLDFLRDLDDADALAYL 122
Query: 502 LSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 561
LS +G+GLK+ CV L L PVDT+V R+A RLG V + ++ +L P
Sbjct: 123 LSLKGVGLKTAACVLLFGLGRDLCPVDTHVHRVANRLGLVRARHPDDTFA----QLSP-- 176
Query: 562 ESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
++ Y LH +I GK C P C CP+R EC
Sbjct: 177 ------------RIPAGKAYSLHVNLIRLGKRICKARMPECGRCPLRHEC 214
>gi|390556756|ref|ZP_10243163.1| DNA-(Apurinic or apyrimidinic site) lyase [Nitrolancetus
hollandicus Lb]
gi|390174670|emb|CCF82450.1| DNA-(Apurinic or apyrimidinic site) lyase [Nitrolancetus
hollandicus Lb]
Length = 247
Score = 103 bits (257), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 95/184 (51%), Gaps = 23/184 (12%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEW---LRDVPPDKAK 498
WEAVR A V +A+ I+ G+ A RI+ L+R++ HG+ D EW L+ +P +AK
Sbjct: 74 WEAVRTAPVADVADAIRSGGLGARKAPRIQAALDRIL-SHGTED-EWSRALKTLPLAEAK 131
Query: 499 EYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY 558
L++ G+G K+ CV L A PVDT+V R++ RLG + +P+ + Q H
Sbjct: 132 ARLMALPGVGPKTAACVLLFACGRPALPVDTHVYRVSKRLGLI--EPVVTAEQAH----- 184
Query: 559 PVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAF 618
+ I+K L P +Y H MI G+ CT KP C CP+R C FA
Sbjct: 185 ---DQIEKLLNP-------EDVYSFHLNMIAHGRQVCTARKPRCEWCPLRSRC-AFAQGK 233
Query: 619 ASSR 622
A SR
Sbjct: 234 AGSR 237
>gi|365873799|ref|ZP_09413332.1| putative endoIII-related endonuclease [Thermanaerovibrio velox DSM
12556]
gi|363983886|gb|EHM10093.1| putative endoIII-related endonuclease [Thermanaerovibrio velox DSM
12556]
Length = 242
Score = 103 bits (256), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 87/170 (51%), Gaps = 17/170 (10%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYL 501
W +V A V ++A IK G+ N A RI++ L + G +E ++ PPD+ +E+L
Sbjct: 83 WGSVAVAPVEEVAEAIKVAGLGNSKAARIREILEVVRGRFGGYTMEPIKHWPPDRVREFL 142
Query: 502 LSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 561
LS G+G K+ CV L L AFPVDT+V R++ RLG+ PL P+ +Q+ VL
Sbjct: 143 LSLPGVGAKTTACVMLFDLGIPAFPVDTHVARLSSRLGFAPLGMEPKDIQV-------VL 195
Query: 562 ESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
E + K +R L H MI G+ C +PNC C + C
Sbjct: 196 EGLLK---------PERYLGA-HVNMICHGRAVCRARRPNCKGCVVTSLC 235
>gi|413945491|gb|AFW78140.1| hypothetical protein ZEAMMB73_391413 [Zea mays]
Length = 78
Score = 101 bits (251), Expect = 2e-18, Method: Composition-based stats.
Identities = 44/55 (80%), Positives = 48/55 (87%)
Query: 853 MRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKG 907
MRGSFPLNGTYFQVNEVFADH SS PI+V RE LWNL RR V+FGTS+P+IFKG
Sbjct: 1 MRGSFPLNGTYFQVNEVFADHRSSHNPIHVEREMLWNLQRRMVFFGTSVPTIFKG 55
>gi|302837608|ref|XP_002950363.1| hypothetical protein VOLCADRAFT_90672 [Volvox carteri f.
nagariensis]
gi|300264368|gb|EFJ48564.1| hypothetical protein VOLCADRAFT_90672 [Volvox carteri f.
nagariensis]
Length = 1442
Score = 99.8 bits (247), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 58/96 (60%), Gaps = 3/96 (3%)
Query: 498 KEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEL 557
+ YL++ GLG KSV C+ LL LH FPVD NV R+ RLGW+P++ L L+
Sbjct: 26 RSYLMAVEGLGRKSVACIVLLALHGKEFPVDINVARVFARLGWIPIE---AEATLEQLDS 82
Query: 558 YPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKV 593
YP + KYL RL D TLYELHYQ IT GK+
Sbjct: 83 YPQEPEVHKYLRSRLMHFDLETLYELHYQSITLGKL 118
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 61/153 (39%), Gaps = 49/153 (32%)
Query: 841 VRGTILIPCRTAMRGSFPLNGTYFQVNEVF------------------------------ 870
+R +L+PCR A+RG FPLNGTYFQ NEVF
Sbjct: 1269 LRAAVLMPCRVALRGGFPLNGTYFQTNEVFLVEHTAQQPLRLRLGQLLGIGVEAGLAALE 1328
Query: 871 -----------------ADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGI 913
+ ++ P VPRE VYFG + SI + +T +
Sbjct: 1329 PPSPSSLPTPSLPQNDAVEMAAAFGPTIVPREVRHEC--TAVYFGHATSSITRDMTAAEV 1386
Query: 914 QHCFWRGYVCVRGFDQKSRAPRPLMARLHFPAS 946
F G VCVR F + PRP+ A L P++
Sbjct: 1387 AELFEEGAVCVRAFCLFTGNPRPIPAFLGAPSA 1419
>gi|312880248|ref|ZP_07740048.1| DNA-(apurinic or apyrimidinic site) lyase [Aminomonas paucivorans
DSM 12260]
gi|310783539|gb|EFQ23937.1| DNA-(apurinic or apyrimidinic site) lyase [Aminomonas paucivorans
DSM 12260]
Length = 232
Score = 98.2 bits (243), Expect = 2e-17, Method: Composition-based stats.
Identities = 60/171 (35%), Positives = 80/171 (46%), Gaps = 17/171 (9%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
DWE+V AD ++ I+ G+ N I+ L RL D G+ L LR PD+A+EY
Sbjct: 69 DWESVALADPGEVQEAIRIAGLANAKGPSIQAILERLREDWGAPTLVPLRSWKPDRAREY 128
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
L + G+G K+ CV + L AFPVDT+V RI RLGWVP P +Q ++E
Sbjct: 129 LEALPGVGPKTAACVMVFDLGFPAFPVDTHVARICRRLGWVPANLPPHRIQ-RVMEETVA 187
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
E Q H +I G+ C P C AC + G C
Sbjct: 188 RERFQG----------------AHLNLIAHGRAVCRARSPRCPACVLVGVC 222
>gi|18419584|gb|AAL69364.1|AF462201_1 unknown [Narcissus pseudonarcissus]
Length = 53
Score = 97.8 bits (242), Expect = 2e-17, Method: Composition-based stats.
Identities = 40/46 (86%), Positives = 43/46 (93%)
Query: 902 PSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMARLHFPASK 947
PSIFKGLTTEGIQHCFWRG+VCVRGFD+ RAP+PL ARLHFPASK
Sbjct: 1 PSIFKGLTTEGIQHCFWRGFVCVRGFDRMMRAPKPLFARLHFPASK 46
>gi|374850043|dbj|BAL53042.1| HhH-GPD family protein [uncultured Chloroflexi bacterium]
Length = 235
Score = 97.4 bits (241), Expect = 3e-17, Method: Composition-based stats.
Identities = 51/172 (29%), Positives = 89/172 (51%), Gaps = 17/172 (9%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYL 501
WEAVR A ++++ I+ G+ A R++ L + + G+++L++L D+P ++A+ +L
Sbjct: 70 WEAVRDAPLDEVIEAIRLAGLAQQKAPRLQQVLREITQQRGALELDFLADLPLEEARRWL 129
Query: 502 LSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 561
+ F+G+G K+ V L +L AFPVDT++ R++ R+G P + E L L+P
Sbjct: 130 MQFKGVGPKTAAIVLLFSLGRPAFPVDTHIYRVSGRIGLRPARMSVEEAHAFLEALFP-- 187
Query: 562 ESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
T Y +H +I G+ C +P C CP+R C +
Sbjct: 188 ---------------PETYYAVHLNLIRLGREVCQARRPQCERCPIREWCDY 224
>gi|320159427|ref|YP_004172651.1| putative DNA glycosylase [Anaerolinea thermophila UNI-1]
gi|319993280|dbj|BAJ62051.1| putative DNA glycosylase [Anaerolinea thermophila UNI-1]
Length = 237
Score = 97.4 bits (241), Expect = 4e-17, Method: Composition-based stats.
Identities = 52/170 (30%), Positives = 91/170 (53%), Gaps = 17/170 (10%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYL 501
WE VR A + ++ I+ G+ N R+++ L ++ + G +DL +L+D+P ++A+ +L
Sbjct: 67 WEDVRDAPLEQVIEAIRPAGLANQKGARLQEVLRQITAERGGLDLSFLQDLPAEEARTWL 126
Query: 502 LSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 561
L F+G+G+K+ V L +L+ AFPVDT+V R++ R+G P Q E +L +++
Sbjct: 127 LRFKGVGVKTASIVLLFSLNKPAFPVDTHVHRVSGRIGLRPPQMSAEDAHAYLAQVF--- 183
Query: 562 ESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
+ ++Y H +I G+ C KP C CP+R C
Sbjct: 184 -TPEQYA-------------AGHLNLIRLGREVCHARKPACPRCPLRAVC 219
>gi|325968210|ref|YP_004244402.1| DNA-(apurinic or apyrimidinic site) lyase [Vulcanisaeta moutnovskia
768-28]
gi|323707413|gb|ADY00900.1| DNA-(apurinic or apyrimidinic site) lyase [Vulcanisaeta moutnovskia
768-28]
Length = 231
Score = 95.9 bits (237), Expect = 9e-17, Method: Composition-based stats.
Identities = 55/166 (33%), Positives = 92/166 (55%), Gaps = 18/166 (10%)
Query: 451 NKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLK 510
+ +AN IK GM+ + A +I + L+R++ ++ DL W++D+P D+A++ LL G+G K
Sbjct: 77 DALANAIKPAGMHRIRARKIIE-LSRVILENYRGDLTWIKDLPLDEARKALLELPGVGEK 135
Query: 511 SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP 570
+ + + L+ L LAFPVDT++ RI++RLG + +S H IQ+ W
Sbjct: 136 TADVI-LVNLGKLAFPVDTHITRISIRLG------IAKSRNYH---------EIQR-AWM 178
Query: 571 RLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFAS 616
R+ D E+H ++I FG+ C P C+ C R C ++ S
Sbjct: 179 RILTPDPSRYLEIHLKLIQFGRDICIARNPRCDMCGFREVCTYYIS 224
>gi|269925878|ref|YP_003322501.1| HhH-GPD family protein [Thermobaculum terrenum ATCC BAA-798]
gi|269789538|gb|ACZ41679.1| HhH-GPD family protein [Thermobaculum terrenum ATCC BAA-798]
Length = 236
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 87/174 (50%), Gaps = 17/174 (9%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
DW+ V A ++A IK G++N+ A RI+ L + GS DL++L+D+P + AKE+
Sbjct: 69 DWKRVMEAPTEEVAQLIKSAGLSNIKAPRIQSVLKEIWSRLGSFDLQFLKDMPINAAKEW 128
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
L S G+G K+ CV + +L PVDT+V R+++RLG +P P + + H +
Sbjct: 129 LTSINGVGPKTAACVLMFSLGLPVMPVDTHVHRVSLRLGLIP--PKTNADRAH-----DI 181
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
L I + Y H +I G+ C P C CP+ C +F
Sbjct: 182 LAQI----------VSPERAYPFHINLIRHGRRVCKAPVPKCTICPLTCLCVYF 225
>gi|440791540|gb|ELR12778.1| base excision DNA repair protein, HhHGPD subfamily protein
[Acanthamoeba castellanii str. Neff]
Length = 494
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 84/174 (48%), Gaps = 19/174 (10%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDH-GSVDLEWLRDVPPDKAKE 499
DWE VR A +++A+ I+ G+ G I+ LN+L + G + LE LRD+P ++ K
Sbjct: 228 DWERVRTAKPSQLADVIRTGGLAQRKGGIIQGLLNQLHEERDGELSLEHLRDMPTEEVKH 287
Query: 500 YLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
L ++G+G K+ CV + + FPVDT+V R++ RLG+V ++ +
Sbjct: 288 ALTKYKGIGPKTASCVLMFNMKRADFPVDTHVHRVSTRLGFVRGTTREQTYEF------- 340
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
P K D +H +I GK C P C C +R +CR+
Sbjct: 341 -----MNATMPDEIKRD------MHVLLIRHGKQVCKARSPKCGECVLRDDCRY 383
>gi|193215044|ref|YP_001996243.1| HhH-GPD family protein [Chloroherpeton thalassium ATCC 35110]
gi|193088521|gb|ACF13796.1| HhH-GPD family protein [Chloroherpeton thalassium ATCC 35110]
Length = 227
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 85/177 (48%), Gaps = 19/177 (10%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
+W + A V +IA +I+ G+ N A RIK L LVR G++ L++L D E+
Sbjct: 68 EWAILLDAPVAEIAKSIEIGGLANQKAQRIKAILQELVRTQGALSLDFLADFSDKAVLEF 127
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
L SF+G+G+K+ CV L L PVDT++ RI RLG + E+ EL P
Sbjct: 128 LTSFKGVGVKTAGCVLLFGLGRDVCPVDTHIHRILNRLGIFSTKHADETFA----ELQPH 183
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASA 617
+ + + Y LH +I GK C KPNC C + +C FA A
Sbjct: 184 IPTGKA--------------YSLHVNLIRHGKRVCCARKPNCQTCMLAEDC-EFARA 225
>gi|86609598|ref|YP_478360.1| base excision DNA repair protein [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86558140|gb|ABD03097.1| base excision DNA repair protein, HhH-GPD family [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 212
Score = 94.0 bits (232), Expect = 3e-16, Method: Composition-based stats.
Identities = 56/170 (32%), Positives = 84/170 (49%), Gaps = 18/170 (10%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYL 501
WEAV AD +A I+ G+ ++ A RI++ L + GS+ L++LRD+ A ++L
Sbjct: 55 WEAVLAADPADLAQVIRSGGLAHLKAARIQEILAAIQERQGSLSLDFLRDLDDAGALDFL 114
Query: 502 LSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 561
LS +G+GLK+ CV L L PVDT+V R+A RLG V + ++ +L P
Sbjct: 115 LSLKGVGLKTATCVLLFGLGRDLCPVDTHVHRVANRLGLVRAKHPDDTFA----QLSP-- 168
Query: 562 ESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
++ + Y LH + GK C P C CP+R C
Sbjct: 169 ------------QIPRGKAYSLHVNFVRLGKRICKARMPECGRCPLRPTC 206
>gi|357419910|ref|YP_004932902.1| HhH-GPD family protein [Thermovirga lienii DSM 17291]
gi|355397376|gb|AER66805.1| HhH-GPD family protein [Thermovirga lienii DSM 17291]
Length = 244
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 103/225 (45%), Gaps = 33/225 (14%)
Query: 396 DATSKSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIAN 455
D K+ ++ + +K D W+SL+ + + W+ V A V ++A+
Sbjct: 53 DGLIKTVLSQNTNDKNRDMAWESLKDRFPS----------------WQQVIDAKVEEVAD 96
Query: 456 TIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECV 515
I+ G+ N+ A RIK L + GS L+ L+ + ++ +L S G+G K++ CV
Sbjct: 97 AIRSAGIANVKAQRIKKILATVNGVWGSCSLKGLKRLEKEEIISFLSSLPGVGPKTIACV 156
Query: 516 RLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKL 575
L L AFPVDT+V R++ RLG+V LPE ++ L EL P
Sbjct: 157 LLFDLGIPAFPVDTHVARLSKRLGFVGGNTLPEDIEKILEELVP---------------- 200
Query: 576 DQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFAS 620
++R L H MI G+ C P C C + C H S A+
Sbjct: 201 EERFLGG-HLNMIAHGRAICKALNPRCQLCSLAHLCEHLNSKGAA 244
>gi|383762204|ref|YP_005441186.1| putative DNA glycosylase [Caldilinea aerophila DSM 14535 = NBRC
104270]
gi|381382472|dbj|BAL99288.1| putative DNA glycosylase [Caldilinea aerophila DSM 14535 = NBRC
104270]
Length = 239
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 82/174 (47%), Gaps = 17/174 (9%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
DW+AVR A ++ I I+ GM N A I L R+ D GS DL L P ++A Y
Sbjct: 69 DWDAVRTAPLDAIKEAIRPAGMYNQKAPAIVATLERIKADWGSYDLRPLAQKPVEEAFTY 128
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
L S G+G K+ V L + AFPVDT++ RI+ R+G + + Y +
Sbjct: 129 LTSLPGVGHKTASIVILFCFNGAAFPVDTHIQRISQRVG----------ISRRRADAYTI 178
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
K +W L ++ Y LH +I G+ C P C CP++ C ++
Sbjct: 179 -----KRIWESL--IEPSAFYALHINLIRHGRRTCQALTPRCELCPLQSMCDYY 225
>gi|397691245|ref|YP_006528499.1| HhH-GPD family protein [Melioribacter roseus P3M]
gi|395812737|gb|AFN75486.1| HhH-GPD family protein [Melioribacter roseus P3M]
Length = 221
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 89/173 (51%), Gaps = 19/173 (10%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
DW + A + +I TIK+ G+ N AG IK+ + L RD+ +D+++++ + +A EY
Sbjct: 48 DWNQLVKAPLKEIEKTIKKAGLTNQKAGAIKNLVVNLSRDN-RLDMKFIKKMDNKEALEY 106
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
L SF+G+G+K+ CV L +L+ PVDT+V R R+G V + PE L + E P
Sbjct: 107 LTSFKGIGIKTASCVLLFSLYRNVCPVDTHVHRTLNRIGIVN-EKSPEKTFLRINENLP- 164
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
E I + LH +I G+ C + P+C CP+ C +
Sbjct: 165 -EGIA---------------HSLHTNLIKLGRGICRPTNPDCTVCPISDLCAY 201
>gi|449015802|dbj|BAM79204.1| similar to endonuclease III [Cyanidioschyzon merolae strain 10D]
Length = 276
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 82/179 (45%), Gaps = 28/179 (15%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVD--------LEWLRDV 492
DW V A V +I TI+ G+ A I+D L L + + LE+LR+V
Sbjct: 101 DWADVLHAPVGEIEETIRIGGLARTKAQHIQDILRELEHNAATTGTDTDWTQGLEFLRNV 160
Query: 493 PPDKAKEYLLSFRGLGLKSVECVRLLTLHHL-AFPVDTNVGRIAVRLGWVPLQPLPESLQ 551
P + EYL + G+G K+ CV + TL +FPVDT++ R+A RLGWVP E Q
Sbjct: 161 PTAQVMEYLTRYPGVGPKTAACVAMFTLERDDSFPVDTHIFRLAKRLGWVPNGHTREQAQ 220
Query: 552 LHLLELYPVLESIQKYLWPRLCKLDQRTL-YELHYQMITFGKVFCTKSKPNCNACPMRG 609
+ L L P TL Y +H MI G+ CT P C C + G
Sbjct: 221 VDLENLIP------------------STLHYPMHILMIEHGRKVCTARGPRCQHCKLAG 261
>gi|413945494|gb|AFW78143.1| hypothetical protein ZEAMMB73_419140 [Zea mays]
Length = 426
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 82/144 (56%), Gaps = 19/144 (13%)
Query: 346 LNLPKIS-----------SGSIDA--IESHNALY-NRENTQLKSSVSDQNKYDHSFSKEL 391
LN PKIS S S +A ++ H +++ E T + D++ SF+
Sbjct: 280 LNTPKISTELPVKLHHDKSSSFEAPNLKEHESVFATHEMTVEATRKEDEHTSKSSFTS-Y 338
Query: 392 NGIDDAT---SKSKSTRVSKEKQND-FDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRC 447
NG+ D SK K TR + K + FDW+ LRRQ + G K+R +DS+DWEAVRC
Sbjct: 339 NGVPDTAAQASKPKKTRTTTAKNTENFDWEKLRRQACSEGQMKQRSFERRDSIDWEAVRC 398
Query: 448 ADVNKIANTIKERGMNNMLAGRIK 471
ADV +I++ I+ERGMNN+LA RI+
Sbjct: 399 ADVRRISHAIRERGMNNVLAERIQ 422
>gi|269792590|ref|YP_003317494.1| DNA-(apurinic or apyrimidinic site) lyase [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269100225|gb|ACZ19212.1| DNA-(apurinic or apyrimidinic site) lyase [Thermanaerovibrio
acidaminovorans DSM 6589]
Length = 232
Score = 88.6 bits (218), Expect = 2e-14, Method: Composition-based stats.
Identities = 53/170 (31%), Positives = 80/170 (47%), Gaps = 17/170 (10%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYL 501
WE+V A V + I+ G+ A RIK+ L ++ G++ L +R D+ + +L
Sbjct: 75 WESVMEAPVEDLEGAIRVAGLGASKARRIKEVLYKVKETLGTLSLGAMRSWRRDEVEAFL 134
Query: 502 LSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 561
+ G+G K+V CV + L AFPVDT+VGR++VR+G P P +QL L L
Sbjct: 135 STLPGVGPKTVACVLVFDLGIPAFPVDTHVGRLSVRMGLAPGGMKPWEIQLRLESL---- 190
Query: 562 ESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
+D H +I G+ C +P C CP+ G C
Sbjct: 191 -------------IDPERYLGAHVNLIFHGRRICKAQRPRCGDCPLLGTC 227
>gi|392407188|ref|YP_006443796.1| endoIII-related endonuclease [Anaerobaculum mobile DSM 13181]
gi|390620324|gb|AFM21471.1| putative endoIII-related endonuclease [Anaerobaculum mobile DSM
13181]
Length = 253
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 82/166 (49%), Gaps = 17/166 (10%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYL 501
W+ V A +IA+ I+ G++N+ A RIK+ L + G L LR + E+L
Sbjct: 88 WDEVLAATHEEIASVIRPAGLSNVKAMRIKEILKIVSDRFGDCSLRDLRRMKKGDIVEFL 147
Query: 502 LSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 561
S G+G K+V CV L L AFPVDT+VGR+ R+GWV + P +Q ++
Sbjct: 148 SSLPGVGPKTVACVLLFDLGLPAFPVDTHVGRLCKRIGWVSAKCSPPEIQ-------KIM 200
Query: 562 ESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPM 607
ESI + + + H +I+ G+ C +P C CP+
Sbjct: 201 ESI----------IPEELYWSAHLDLISHGRNICLARRPQCGECPL 236
>gi|289523004|ref|ZP_06439858.1| endonuclease III [Anaerobaculum hydrogeniformans ATCC BAA-1850]
gi|289503547|gb|EFD24711.1| endonuclease III [Anaerobaculum hydrogeniformans ATCC BAA-1850]
Length = 255
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 78/166 (46%), Gaps = 17/166 (10%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYL 501
WE V ++A IK G++N+ A RIK L + GS L+ L+ + ++ ++L
Sbjct: 88 WEDVLVTAETELAEVIKPAGLSNIKASRIKSVLGLITERFGSCSLKPLKGMKKEEIIDFL 147
Query: 502 LSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 561
S G+G K+V CV L L AFPVDT+V R+ R+GWV + PE Q + + P
Sbjct: 148 SSLPGVGPKTVACVLLFDLGIPAFPVDTHVNRLCKRIGWVSPKSTPEETQKIMGSVIP-- 205
Query: 562 ESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPM 607
+ H +I+ G+ C +P C CP+
Sbjct: 206 ---------------SDLYWSAHLDIISHGRNICVSRRPKCTICPL 236
>gi|116754221|ref|YP_843339.1| HhH-GPD family protein [Methanosaeta thermophila PT]
gi|116665672|gb|ABK14699.1| HhH-GPD family protein [Methanosaeta thermophila PT]
Length = 219
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 81/162 (50%), Gaps = 17/162 (10%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
+IA+ I+ G+ ++ A RIK L RL D GSVDL L+ + +A+ YL S G+G K+
Sbjct: 69 EIADAIRPGGLADIKAARIKGALERLRDDFGSVDLSPLKRMSAVEARNYLKSIPGIGPKT 128
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
+ L A PVDT+V R++ R+G VP E Q L E+ P +KY+
Sbjct: 129 ASVLMLFGFGMSAMPVDTHVYRVSRRMGLVPENASIEETQRILEEITPH----EKYI--- 181
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
LH +I G++ C P C C ++G CR+
Sbjct: 182 ----------SLHINLIRHGRLVCKARNPLCKKCELKGLCRY 213
>gi|361069807|gb|AEW09215.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
Length = 137
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 76/144 (52%), Gaps = 29/144 (20%)
Query: 600 PNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANENRTNTQNPAMMI--------- 650
PNCNACPMR +C+HFASAF S+RL L S E+ ++T NP + +
Sbjct: 1 PNCNACPMRCDCKHFASAFTSARLLL--------TSTKESSSDT-NPLLTLPYKENENAP 51
Query: 651 -NQLPLPLTH--------ATDLPVGKLEIAVNN--CEPIIEEPATPEPERVQVSENDIED 699
LPLP A LP+ LE + CEPIIEEP TPEPE ++ + +E+
Sbjct: 52 STPLPLPTIQQDVNIEKPAEVLPLQLLESNPQDHKCEPIIEEPTTPEPEIIENTNTIVEE 111
Query: 700 TFCEDPEEIPTIKLNMKEFTQTLQ 723
DP+EIP IKLN + +Q
Sbjct: 112 CAYTDPDEIPVIKLNFDQLALHIQ 135
>gi|298242385|ref|ZP_06966192.1| HhH-GPD family protein [Ktedonobacter racemifer DSM 44963]
gi|297555439|gb|EFH89303.1| HhH-GPD family protein [Ktedonobacter racemifer DSM 44963]
Length = 245
Score = 87.0 bits (214), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 84/176 (47%), Gaps = 15/176 (8%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYL 501
WE VR A ++ TI + A RI+ + ++ + G+++L++L +P ++A +L
Sbjct: 81 WEGVRDAPTKEVEETIANVNFPEVKAPRIQAIMRQITEERGNLNLDFLCSLPVEEAAAWL 140
Query: 502 LSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 561
F+G+G K+ CV L + PVD +V R ++R+G + + ++ L L P
Sbjct: 141 NRFQGIGPKTTACVLLFSCKMPILPVDIHVHRTSIRIGLIGNKVTADNAHTLLQALLPN- 199
Query: 562 ESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASA 617
D RT+Y H ++ G+ C +P CN CP+ C ++ +
Sbjct: 200 --------------DARTIYNFHKGLLRLGQRICVYERPRCNQCPLTKLCDYYRTV 241
>gi|294102031|ref|YP_003553889.1| DNA-(apurinic or apyrimidinic site) lyase [Aminobacterium
colombiense DSM 12261]
gi|293617011|gb|ADE57165.1| DNA-(apurinic or apyrimidinic site) lyase [Aminobacterium
colombiense DSM 12261]
Length = 233
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 85/170 (50%), Gaps = 17/170 (10%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYL 501
WE V AD +I I+ G++++ + RIK+ L + GS ++ LR ++A+ +L
Sbjct: 72 WEEVAQADTERIKEAIRVAGLSDIKSKRIKEILVAVQDAFGSYSIKELRKRGREQARAFL 131
Query: 502 LSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 561
G+G K+V CV L L + AFPVDT++ R + R+GW + PE ++ L ++ P
Sbjct: 132 FKLPGVGAKTVACVLLFDLGYPAFPVDTHIHRFSKRIGWAHDRCKPEEIEGMLEQVVPE- 190
Query: 562 ESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
++YL H +IT G+ C +P C+ C + C
Sbjct: 191 ---ERYLGG-------------HINIITHGRNICLARQPRCDKCSVNDLC 224
>gi|307108459|gb|EFN56699.1| hypothetical protein CHLNCDRAFT_11543, partial [Chlorella
variabilis]
Length = 185
Score = 86.7 bits (213), Expect = 6e-14, Method: Composition-based stats.
Identities = 55/172 (31%), Positives = 78/172 (45%), Gaps = 25/172 (14%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYL 501
WE VR A + +A+ I+ G+ ++ AGRI+ L+ L + G LE LR +P AK L
Sbjct: 38 WEGVRTAPLAAVADAIRVGGLADIKAGRIQAILSTLAAERGECSLEHLRGLPAAAAKAEL 97
Query: 502 LSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 561
F+G+G K+ CV L L F VDT+V I+ LGWVP+ + H+ EL P
Sbjct: 98 SRFKGVGKKTAACVLLFALELPEFAVDTHVWEISKALGWVPVNATRDQAYDHMNELVP-- 155
Query: 562 ESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
Y+LH ++ GK C AC G +
Sbjct: 156 ---------------DELKYDLHVLLVRHGK--------QCPACAKAGSAKQ 184
>gi|326436846|gb|EGD82416.1| hypothetical protein PTSG_03059 [Salpingoeca sp. ATCC 50818]
Length = 495
Score = 86.3 bits (212), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 58/101 (57%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYL 501
WE V ADV + I+ G+ + RIK L+ L +HG + LE+LR++P KE L
Sbjct: 271 WEDVHSADVGALEAAIRSAGLAQTKSRRIKSILDTLHAEHGKLSLEYLRELPSHTVKEQL 330
Query: 502 LSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVP 542
F+G+G K++ C+ L + VDT+V R+A R GWVP
Sbjct: 331 ARFKGVGPKTISCLLLFAMQRPDMAVDTHVFRLAKRAGWVP 371
>gi|361069805|gb|AEW09214.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
Length = 137
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 75/144 (52%), Gaps = 29/144 (20%)
Query: 600 PNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANENRTNTQNPAMMI--------- 650
PNCNACPMR +C+HFASAF S+RL L S E ++T NP + +
Sbjct: 1 PNCNACPMRCDCKHFASAFTSARLLL--------TSTKETSSDT-NPMLTLPYKENENAP 51
Query: 651 -NQLPLPLTH--------ATDLPVGKLEIAVNN--CEPIIEEPATPEPERVQVSENDIED 699
LPLP A LP+ L+ + CEPIIEEP TPEPE ++ + +E+
Sbjct: 52 STPLPLPTIQQDVNIEKPAEVLPLQLLKSDPEDHKCEPIIEEPTTPEPEFIENTNTIVEE 111
Query: 700 TFCEDPEEIPTIKLNMKEFTQTLQ 723
DP+EIP IKLN + +Q
Sbjct: 112 CAYTDPDEIPVIKLNFDQLALHIQ 135
>gi|383158249|gb|AFG61482.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
gi|383158250|gb|AFG61483.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
gi|383158251|gb|AFG61484.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
gi|383158252|gb|AFG61485.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
gi|383158253|gb|AFG61486.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
gi|383158254|gb|AFG61487.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
gi|383158255|gb|AFG61488.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
gi|383158256|gb|AFG61489.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
gi|383158257|gb|AFG61490.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
gi|383158258|gb|AFG61491.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
gi|383158259|gb|AFG61492.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
gi|383158260|gb|AFG61493.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
gi|383158261|gb|AFG61494.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
gi|383158262|gb|AFG61495.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
gi|383158263|gb|AFG61496.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
gi|383158264|gb|AFG61497.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
gi|383158265|gb|AFG61498.1| Pinus taeda anonymous locus UMN_535_01 genomic sequence
Length = 137
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 73/135 (54%), Gaps = 11/135 (8%)
Query: 600 PNCNACPMRGECRHFASAFASSRLALPGPEEKA---------IVSANENRTNTQNPAMMI 650
PNCNACPMR +C+HFASAF S+RL L +E + NEN +T P I
Sbjct: 1 PNCNACPMRCDCKHFASAFTSARLLLTSTKESSSDINPMLTLPYKENENAPSTPLPLPTI 60
Query: 651 NQLPLPLTHATDLPVGKLEIAVNN--CEPIIEEPATPEPERVQVSENDIEDTFCEDPEEI 708
Q A LP+ L+ + CEPIIEEP TPEPE ++ + +E+ DP+EI
Sbjct: 61 QQDVNIEKPAEVLPLQLLKSDPEDHKCEPIIEEPTTPEPEFIENTNTIVEECAYTDPDEI 120
Query: 709 PTIKLNMKEFTQTLQ 723
P IKLN + +Q
Sbjct: 121 PVIKLNFDQLALHIQ 135
>gi|167997017|ref|XP_001751215.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697196|gb|EDQ83532.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 272
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 74/151 (49%), Gaps = 17/151 (11%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYL 501
WE V AD K+ + I+ G+ A RI + L+ + + GS+ LE++R + D+ K L
Sbjct: 96 WEEVHAADPKKVEDAIRCGGLAETKAKRIINILDTIFTERGSICLEYVRSMNVDQIKAEL 155
Query: 502 LSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 561
F+G+G K+V CV + L FPVDT+V R++ LGWVP E LH+ P
Sbjct: 156 SRFKGVGPKTVACVLMFHLEQNEFPVDTHVFRLSKMLGWVPASADREKTYLHMNSRVP-- 213
Query: 562 ESIQKYLWPRLCKLDQRTLYELHYQMITFGK 592
Y+LH ++T GK
Sbjct: 214 ---------------DEVKYDLHCLLVTHGK 229
>gi|374857375|dbj|BAL60228.1| endonuclease III [uncultured candidate division OP1 bacterium]
Length = 225
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 81/171 (47%), Gaps = 20/171 (11%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
++E++ A K+A IK G++ A RI++ L R+ R+ G DL +L+D+ + A
Sbjct: 60 NYESIVRAPTEKVAEAIKVGGLHQQKAKRIQEILRRIQRERGDYDLSYLKDLSTEHAVRE 119
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
LL F G+G K+ V +L+ FPVDT++ RI RLG V + P
Sbjct: 120 LLKFDGVGKKTAGVVLTFSLNKPYFPVDTHIHRITQRLGLVKQREDP------------- 166
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
+ L P R Y+LH +I G+ C KP C+ C + C
Sbjct: 167 -HDVMNALVP------DRLKYQLHLHLIWHGRQTCKARKPLCDQCVIADLC 210
>gi|374852558|dbj|BAL55489.1| endonuclease III [uncultured candidate division OP1 bacterium]
Length = 225
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 80/170 (47%), Gaps = 20/170 (11%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYL 501
+E++ A K+A IK G++ A RI++ L R+ R+ G DL +L+D+ + A L
Sbjct: 61 YESIVRAPTEKVAEAIKVGGLHQQKAKRIQEILRRIQRERGDYDLSYLKDLSTEHAVREL 120
Query: 502 LSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 561
L F G+G K+ V +L+ FPVDT++ RI RLG V + P
Sbjct: 121 LKFDGVGKKTAGVVLTFSLNKPYFPVDTHIHRITQRLGLVKQREDP-------------- 166
Query: 562 ESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
+ L P R Y+LH +I G+ C KP C+ C + C
Sbjct: 167 HDVMNALVP------DRLKYQLHLHLIWHGRQTCKARKPLCDQCVIADLC 210
>gi|255074589|ref|XP_002500969.1| predicted protein [Micromonas sp. RCC299]
gi|226516232|gb|ACO62227.1| predicted protein, partial [Micromonas sp. RCC299]
Length = 216
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 73/153 (47%), Gaps = 17/153 (11%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYL 501
WE VR A K+ + I+ G+ + RI+ LN L + G +E+LRD+ D K L
Sbjct: 81 WEQVRTAKPAKVEDAIRCGGLAEVKVSRIQVILNTLKEERGECSMEYLRDMSDDDVKAEL 140
Query: 502 LSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 561
F+G+G K+V CV + L FPVDT+V +IA LGW+P E HL
Sbjct: 141 SRFKGVGPKTVSCVLMFCLKRPDFPVDTHVWKIAKDLGWIPKGAGREDAYEHLNRRV--- 197
Query: 562 ESIQKYLWPRLCKLDQRTLYELHYQMITFGKVF 594
P CK D LH ++ GKV+
Sbjct: 198 --------PDDCKFD------LHVLLVEHGKVY 216
>gi|320333147|ref|YP_004169858.1| HhH-GPD family protein [Deinococcus maricopensis DSM 21211]
gi|319754436|gb|ADV66193.1| HhH-GPD family protein [Deinococcus maricopensis DSM 21211]
Length = 258
Score = 84.3 bits (207), Expect = 3e-13, Method: Composition-based stats.
Identities = 51/171 (29%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
DW+A+ A V ++A+ I+ + A RI+ L + G+ DL +L D+P + ++
Sbjct: 72 DWDAIAEAPVEQVAHAIRASNYPEVKAPRIQATLKAICAQRGNYDLSFLVDLPHEDGLKW 131
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
L G+G+K+ V L FPVDT+V RI R+G +P
Sbjct: 132 LTDLPGVGVKTASLVLLFNFSKPVFPVDTHVHRITTRVGAIPRMG--------------- 176
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
E++ +L D LYELH ++ G+ CT S+P C C +R C
Sbjct: 177 -EAVAHKALLKLLAPDPPFLYELHINLLKHGQQVCTFSRPRCPKCVLRDLC 226
>gi|386855256|ref|YP_006259433.1| Endonuclease III [Deinococcus gobiensis I-0]
gi|379998785|gb|AFD23975.1| Endonuclease III [Deinococcus gobiensis I-0]
Length = 223
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 78/171 (45%), Gaps = 16/171 (9%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
DW + A +A+ I+ A RI++ L R+ G DL++LRD+P A ++
Sbjct: 50 DWADIIAAPTEVVAHAIRRSNYPESKAPRIQETLRRIRDAPGGYDLDFLRDLPVKDALKW 109
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
L G+G+K+ V L H FPVDT+V RI +R+G +P +
Sbjct: 110 LTDLPGVGVKTASLVLLFNYHRPVFPVDTHVFRINIRVGTIP----------------QM 153
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
E L D LYELH +++ G+ CT + P C C +R C
Sbjct: 154 TEQAAHRALLALLPPDPPFLYELHVNLLSHGRQVCTWTAPKCGECFIRERC 204
>gi|282856173|ref|ZP_06265456.1| endonuclease III (DNA-(apurinic or apyrimidinic site)lyase)
[Pyramidobacter piscolens W5455]
gi|282585932|gb|EFB91217.1| endonuclease III (DNA-(apurinic or apyrimidinic site)lyase)
[Pyramidobacter piscolens W5455]
Length = 234
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 71/170 (41%), Gaps = 17/170 (10%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYL 501
W+ V ++IA IK G+ N A I L + G L+ L+ P A +++
Sbjct: 77 WDRVAALPQDRIAEAIKPAGICNNKAATILRVLKTVKERFGEYSLKRLKSGTPAAAWDFM 136
Query: 502 LSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 561
+G+G K+ CV L AFPVDT+V RI+ RLGW + P +Q L L P
Sbjct: 137 THIQGVGPKTAACVLAFDLGFPAFPVDTHVARISKRLGWADAKETPAEIQARLERLVP-- 194
Query: 562 ESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
H +I GK C P C CP+RG C
Sbjct: 195 ---------------DGMKCAGHLDVIQHGKNICKARAPKCGECPLRGIC 229
>gi|392966115|ref|ZP_10331534.1| HhH-GPD family protein [Fibrisoma limi BUZ 3]
gi|387845179|emb|CCH53580.1| HhH-GPD family protein [Fibrisoma limi BUZ 3]
Length = 255
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 86/195 (44%), Gaps = 15/195 (7%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYL 501
WE VR A + + + IK + A I++ L ++R+ G V +++LRD+ + A ++L
Sbjct: 66 WEQVRDAPLPDLIDAIKTANYPEVKAPYIQNVLAHIIRERGDVSIDFLRDLSTEAAMKWL 125
Query: 502 LSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 561
G+GLK+ + L PVDT+V R+ R+G + + E LL P
Sbjct: 126 TDLPGIGLKTATLLLLFNFRKPVLPVDTHVHRVTQRVGLIGPKVSAEKAYAMLLAYLPQ- 184
Query: 562 ESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASS 621
D + L+ H G+ CT P C+ C +R C ++ S
Sbjct: 185 --------------DAKDLFNFHKHFYWHGQRICTWYTPKCHECVLRDMCDYYQSGGTMM 230
Query: 622 RLALPGPEEKAIVSA 636
+ P P+ K + SA
Sbjct: 231 LSSTPVPKSKRVGSA 245
>gi|307596439|ref|YP_003902756.1| HhH-GPD family protein [Vulcanisaeta distributa DSM 14429]
gi|307551640|gb|ADN51705.1| HhH-GPD family protein [Vulcanisaeta distributa DSM 14429]
Length = 232
Score = 84.0 bits (206), Expect = 4e-13, Method: Composition-based stats.
Identities = 52/166 (31%), Positives = 85/166 (51%), Gaps = 18/166 (10%)
Query: 451 NKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLK 510
+ +AN IK GM+ + A +I + L+R++ + DL W+ D P D+A++ LL G+G K
Sbjct: 77 DALANAIKPAGMHRIRARKIIE-LSRVILERYGGDLTWIVDSPLDEARKALLELPGVGEK 135
Query: 511 SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP 570
+ + + L+ L FPVDT++ RI++RLG V + E IQK W
Sbjct: 136 TADVI-LVNLGKPTFPVDTHITRISIRLGIVKSRNYRE---------------IQK-AWM 178
Query: 571 RLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFAS 616
+ D E+H ++I FG+ C P C+ C + C ++ S
Sbjct: 179 GILTPDPSRYLEVHLKLIQFGRDVCRARNPRCDMCGFKEVCNYYMS 224
>gi|255540783|ref|XP_002511456.1| Endonuclease III, putative [Ricinus communis]
gi|223550571|gb|EEF52058.1| Endonuclease III, putative [Ricinus communis]
Length = 291
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 86/176 (48%), Gaps = 9/176 (5%)
Query: 389 KELNGIDDATSKSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLD-----WE 443
+ L G DD +KS+ V+ + + D L + V + + + D+L W+
Sbjct: 64 QRLGGDDD----NKSSDVNSDTAEETVLDGLVKTVLSQNTTEVNSQRAFDNLKSDFPTWQ 119
Query: 444 AVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLS 503
V A+ I N I+ G+ A IK+ LN L+ G + LE+LRD+ D+ K L
Sbjct: 120 DVLAAEPKWIENAIRCGGLAPAKASCIKNILNCLLEKKGKICLEYLRDMSVDEIKAELSQ 179
Query: 504 FRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
F+G+G K+V CV + L FPVDT+V IA LGWVP LHL + P
Sbjct: 180 FKGVGPKTVACVLMFHLQQEDFPVDTHVFEIAKALGWVPEVADRNKTYLHLNQRIP 235
>gi|325283930|ref|YP_004256471.1| HhH-GPD family protein [Deinococcus proteolyticus MRP]
gi|324315739|gb|ADY26854.1| HhH-GPD family protein [Deinococcus proteolyticus MRP]
Length = 248
Score = 83.6 bits (205), Expect = 5e-13, Method: Composition-based stats.
Identities = 52/175 (29%), Positives = 83/175 (47%), Gaps = 16/175 (9%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
DW+A+ A V ++A+ I+ + A RI+ L + G DL++L ++P +A +
Sbjct: 79 DWDAIVAAPVEQVAHAIRRSNYPDQKAPRIQATLRAIREKRGGYDLDFLAELPVAEALSW 138
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
L G+G+K+ V L FPVDT+V RI R+G +P + ++ LL L P
Sbjct: 139 LTDLPGVGVKTASLVLLFNYARPVFPVDTHVHRINTRVGTIP-KMGEQTAHRALLTLLPS 197
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFA 615
D LY+LH ++ G+ CT + P C C +R C +A
Sbjct: 198 ---------------DPPLLYDLHVNLLKHGQQVCTWNNPKCGRCILRERCDAYA 237
>gi|15807425|ref|NP_296158.1| endonuclease III [Deinococcus radiodurans R1]
gi|6460251|gb|AAF11977.1|AE002073_7 endonuclease III [Deinococcus radiodurans R1]
Length = 259
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 82/175 (46%), Gaps = 16/175 (9%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
DW+A+ A + +A+ I+ A RI++ L R+ G DL++LRD+P A ++
Sbjct: 79 DWDAITLAPTDAVAHAIRRSNYPESKAPRIQETLRRIKAAPGGYDLDFLRDLPVKDALKW 138
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
L G+G+K+ V L FPVDT+V R++ R+G +P +
Sbjct: 139 LTDLPGVGVKTASLVLLFNYARPVFPVDTHVHRVSTRVGVIPR----------------M 182
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFA 615
E L D LYELH ++ G+ CT ++P C C +R C +A
Sbjct: 183 GEQAAHRALLALLPPDPPYLYELHINFLSHGRQVCTWTRPKCGKCILRERCDAYA 237
>gi|242095290|ref|XP_002438135.1| hypothetical protein SORBIDRAFT_10g008590 [Sorghum bicolor]
gi|241916358|gb|EER89502.1| hypothetical protein SORBIDRAFT_10g008590 [Sorghum bicolor]
Length = 279
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 81/172 (47%), Gaps = 13/172 (7%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYL 501
W+ V + ++ + I+ G+ A RI+ L + G + LE+LR++ D+ K+ L
Sbjct: 109 WDQVVDEEGKRLEDAIRCGGLATTKAARIRAMLRDVRERRGKICLEYLRELSVDEVKKEL 168
Query: 502 LSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 561
F+G+G K+V CV + L FPVDT+V RI +GWVP E +HL
Sbjct: 169 SRFKGIGPKTVACVLMFYLQKDDFPVDTHVLRITKAMGWVPATASREKAYIHL------- 221
Query: 562 ESIQKYLWPRLCKLDQRTLYELHYQMI--TFGKVFCTKSKPNCNACPMRGEC 611
P K D L+ H ++ KV KSK + ACP+ G C
Sbjct: 222 ----NNKIPDDLKFDLNCLFVTHGKLCQSCTKKVVSDKSKNSNAACPLAGYC 269
>gi|288575002|ref|ZP_06393359.1| HhH-GPD family protein [Dethiosulfovibrio peptidovorans DSM 11002]
gi|288570743|gb|EFC92300.1| HhH-GPD family protein [Dethiosulfovibrio peptidovorans DSM 11002]
Length = 238
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 78/170 (45%), Gaps = 17/170 (10%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYL 501
WE V +++A+ I+ G+ N+ AGR+ D L + + G L L+ D + +L
Sbjct: 80 WEDVASVTPDELADAIRVAGIANVKAGRMLDVLKIIHDELGEYGLTGLKYRDHDGVRAFL 139
Query: 502 LSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 561
G+G K+ CV + + AFPVDT+V R R+ WVP P +Q ++ ++ P
Sbjct: 140 EGLPGVGPKTAACVLVFDMDIPAFPVDTHVARFCRRMEWVPRSATPVRIQEYMEKIVP-- 197
Query: 562 ESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
D+R H +I+ GK C KP C CP+ C
Sbjct: 198 --------------DERK-KGAHLNIISHGKSICKARKPICQRCPLIDLC 232
>gi|303272857|ref|XP_003055790.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463764|gb|EEH61042.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 249
Score = 81.3 bits (199), Expect = 2e-12, Method: Composition-based stats.
Identities = 52/153 (33%), Positives = 75/153 (49%), Gaps = 19/153 (12%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYL 501
WE +R A ++ IK G+ + RIK LN LV + G+ +E+LRD+ D K L
Sbjct: 114 WETIRAAPSAEVEAAIKCGGLAEIKTSRIKVILNTLVEERGAPCMEYLRDMSDDDVKSEL 173
Query: 502 LSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 561
F+G+G K++ CV + L FPVD +V +IA+ LGWVP ++ HL
Sbjct: 174 SRFKGVGPKTIACVLVFCLRR--FPVDAHVWKIAMALGWVPKSASRDAAYEHL------- 224
Query: 562 ESIQKYLWPRLCKLDQRTLYELHYQMITFGKVF 594
P CKLD LH ++ GK +
Sbjct: 225 ----NRRVPDACKLD------LHVLLVEHGKAY 247
>gi|297815970|ref|XP_002875868.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321706|gb|EFH52127.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 294
Score = 81.3 bits (199), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 60/102 (58%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
+WE V A+ I + I+ G+ A IK+ LNRL + G + LE+LR + ++ K
Sbjct: 127 NWEDVLAAESKSIESAIRCGGLAPKKAVCIKNILNRLQTERGVLCLEYLRGLSVEEVKTE 186
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVP 542
L F+G+G K+V CV + L H FPVDT+V IA LGWVP
Sbjct: 187 LSHFKGIGPKTVSCVLMFNLQHNDFPVDTHVFEIAKALGWVP 228
>gi|340516169|gb|EGR46419.1| predicted protein [Trichoderma reesei QM6a]
Length = 274
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 84/200 (42%), Gaps = 26/200 (13%)
Query: 411 QNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRI 470
QN D +S R K+ E S +W ++ K+ TI G++ + + I
Sbjct: 95 QNTSDRNSSR-------AKRAMDETYGGSDNWASIVEGGTEKLQRTIHSGGLSVVKSRVI 147
Query: 471 KDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTN 530
D L++ +G L+ L D D+A LLSF+G+G K+ CV L L +F VDT+
Sbjct: 148 MDILHQTKARYGKYSLDHLLDASDDEAMRELLSFQGVGPKTASCVLLFCLRRDSFAVDTH 207
Query: 531 VGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITF 590
V RI+ LGW+P E Q HL P Y LH M+T
Sbjct: 208 VYRISSLLGWIPPSATREQAQAHLEARVP-----------------DEDKYGLHILMVTH 250
Query: 591 GK--VFCTKSKPNCNACPMR 608
GK C N C +R
Sbjct: 251 GKRCAECKARGKNAGKCALR 270
>gi|296420260|ref|XP_002839693.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295635887|emb|CAZ83884.1| unnamed protein product [Tuber melanosporum]
Length = 441
Score = 80.5 bits (197), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 95/210 (45%), Gaps = 42/210 (20%)
Query: 439 SLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRD----------HGSVDLEW 488
++DW+AVR AD++ + N+I++ GM RIK+ L+ ++ G + L++
Sbjct: 194 TVDWDAVRRADLDDVVNSIRKGGMAPTKGRRIKNLLDAKRKEPLSNPDKDDEDGDLSLDY 253
Query: 489 LRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPE 548
+ + D+A++ L SF G+G K+ CV L L +F VDT+V R++ L WVP + E
Sbjct: 254 IHKLSDDEARQKLTSFDGVGPKTASCVMLFCLRRDSFAVDTHVFRLSKFLKWVPAKATRE 313
Query: 549 SLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMR 608
+ HL P Y LH +I G+ C + C A P
Sbjct: 314 TTYAHLDVRVPAEHK-----------------YALHNLLIRHGRT-CKE----CKAGP-- 349
Query: 609 GECRHFASAFASSRLAL-----PGPEEKAI 633
+H SS +L PGP + +
Sbjct: 350 ---KHKGKKRVSSETSLDLSPEPGPRMRKV 376
>gi|358381882|gb|EHK19556.1| hypothetical protein TRIVIDRAFT_24735, partial [Trichoderma virens
Gv29-8]
Length = 274
Score = 80.5 bits (197), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 73/170 (42%), Gaps = 19/170 (11%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
+WEA+ K+ TI+ G++ + + I + L + +GS L+ L D A
Sbjct: 108 NWEAIVDGGTEKLQRTIRSGGLSVVKSKVIINILRQTKAKYGSYSLDHLLHASNDSAMRE 167
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
LLSF+G+G K+ CV L L +FPVDT+V RI LGW P E Q HL P
Sbjct: 168 LLSFQGVGPKTASCVLLFCLQRDSFPVDTHVYRITGLLGWRPETASREEAQAHLEARVP- 226
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVF--CTKSKPNCNACPMR 608
Y LH ++T GK C CP+R
Sbjct: 227 ----------------DEDKYGLHILLVTHGKTCNECRAGSTKSGKCPLR 260
>gi|18408516|ref|NP_566893.1| HhH-GPD base excision DNA repair protein-related protein
[Arabidopsis thaliana]
gi|332644814|gb|AEE78335.1| HhH-GPD base excision DNA repair protein-related protein
[Arabidopsis thaliana]
Length = 293
Score = 80.1 bits (196), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 59/101 (58%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYL 501
W+ V A+ I N I+ G+ A IK+ LNRL + G + LE+LR + ++ K L
Sbjct: 128 WDDVLNAESKSIENAIRCGGLAPKKAVCIKNILNRLQNERGRLCLEYLRGLSVEEVKTEL 187
Query: 502 LSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVP 542
F+G+G K+V CV + L H FPVDT+V IA LGWVP
Sbjct: 188 SHFKGVGPKTVSCVLMFNLQHNDFPVDTHVFEIAKALGWVP 228
>gi|195645374|gb|ACG42155.1| ROS1 protein [Zea mays]
gi|219887377|gb|ACL54063.1| unknown [Zea mays]
Length = 276
Score = 79.7 bits (195), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 83/172 (48%), Gaps = 13/172 (7%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYL 501
W+ V + ++ + I+ G+ A RI+ L + G + LE+LR++ D+ K+ L
Sbjct: 107 WDQVVDEEGKRLEDAIRCGGLAATKAARIRSMLRDVRERRGKICLEYLRELSVDEVKKEL 166
Query: 502 LSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 561
F+G+G K+V CV + L FPVDT+V RI +GWVP E +HL P
Sbjct: 167 SRFKGIGPKTVACVLMFYLQKDDFPVDTHVLRITKAMGWVPATASREKAYIHLNNKIP-- 224
Query: 562 ESIQKYLWPRLCKLDQRTLYELHYQMI--TFGKVFCTKSKPNCNACPMRGEC 611
+ + K D L+ H ++ KV K K + +ACP+ G C
Sbjct: 225 DDL---------KFDLNCLFVTHGKLCQSCTKKVGSDKRKSSNSACPLAGYC 267
>gi|297801424|ref|XP_002868596.1| hypothetical protein ARALYDRAFT_916063 [Arabidopsis lyrata subsp.
lyrata]
gi|297314432|gb|EFH44855.1| hypothetical protein ARALYDRAFT_916063 [Arabidopsis lyrata subsp.
lyrata]
Length = 93
Score = 79.7 bits (195), Expect = 7e-12, Method: Composition-based stats.
Identities = 33/54 (61%), Positives = 41/54 (75%)
Query: 853 MRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFK 906
M+ FPLNGTYFQ NEVFAD+DSS+ PI+VPR+ +W+L RR YFG+ S K
Sbjct: 1 MKSGFPLNGTYFQTNEVFADYDSSINPIDVPRKLIWDLDRRIAYFGSFYLSFVK 54
>gi|330508003|ref|YP_004384431.1| DNA-(apurinic or apyrimidinic site) lyase [Methanosaeta concilii
GP6]
gi|328928811|gb|AEB68613.1| DNA-(apurinic or apyrimidinic site) lyase, putative [Methanosaeta
concilii GP6]
Length = 224
Score = 79.7 bits (195), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 86/178 (48%), Gaps = 17/178 (9%)
Query: 437 KDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDK 496
+D ++E++ A ++A+ I+E G+ N+ A RI++ L + RD G++D+ +L + D+
Sbjct: 58 RDYGNYESLLLAPTEEVADCIREGGLANIKALRIQEVLLSIKRDRGAMDIGFLEGMDKDE 117
Query: 497 AKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLE 556
A YLL G+G K+ V L PVDT+V R++ RLG VP PE Q
Sbjct: 118 AMSYLLDLPGVGPKTASIVLLFAFGMPFMPVDTHVFRVSQRLGLVPENLSPEKAQ----- 172
Query: 557 LYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
+++++ + P + H +I G+ C P C ++ C F
Sbjct: 173 -----KALERIVPP-------ECYHSFHLNLIRHGRQICRARGPKHEECALKECCDCF 218
>gi|357477261|ref|XP_003608916.1| Ultraviolet N-glycosylase/AP lyase [Medicago truncatula]
gi|355509971|gb|AES91113.1| Ultraviolet N-glycosylase/AP lyase [Medicago truncatula]
Length = 280
Score = 79.3 bits (194), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 64/118 (54%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYL 501
WE V A+ ++ N I+ G+ A IK+ L+ L+ G + LE+LRD+ D+ K L
Sbjct: 115 WEHVHGAESKELENAIRCGGLAPTKAKCIKNLLSCLLERKGKMCLEYLRDLSVDEVKAEL 174
Query: 502 LSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
F+G+G K+V CV + L FPVDT++ IA +GWVP LHL + P
Sbjct: 175 SLFKGIGPKTVSCVLMFNLQLDDFPVDTHIFEIAKTMGWVPAAADRNKTYLHLNQRIP 232
>gi|384248095|gb|EIE21580.1| DNA glycosylase, partial [Coccomyxa subellipsoidea C-169]
Length = 257
Score = 79.3 bits (194), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 83/174 (47%), Gaps = 27/174 (15%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYL 501
WE V A K+ I+ G+ ++ A RIK L L+ + G + +E+LR++ D+ K L
Sbjct: 95 WEDVLRAPPGKMEEAIRMGGLADIKAERIKAILATLLEERGKICMEYLREMSDDEIKAEL 154
Query: 502 LSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 561
F+G+G K+V CV + L FPVDT+V RI+ LGWVP + ++ HL P
Sbjct: 155 --FKGVGKKTVACVLMFCLAREEFPVDTHVWRISKSLGWVPAKATRDAAYEHLNLHVPA- 211
Query: 562 ESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNA-------CPMR 608
D R Y+LH M+ GK C + N CP+R
Sbjct: 212 --------------DVR--YDLHVLMVEHGK-RCPRCASNGKPRKESHGDCPLR 248
>gi|413944180|gb|AFW76829.1| ROS1 protein [Zea mays]
Length = 340
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 81/172 (47%), Gaps = 13/172 (7%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYL 501
W+ V + ++ + I+ G+ A RI+ L + G + LE+LR++ D+ K+ L
Sbjct: 171 WDQVVDEEGKRLEDAIRCGGLAATKAARIRSMLRDVRERRGKICLEYLRELSVDEVKKEL 230
Query: 502 LSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 561
F+G+G K+V CV + L FPVDT+V RI +GWVP E +HL
Sbjct: 231 SRFKGIGPKTVACVLMFYLQKDDFPVDTHVLRITKAMGWVPATASREKAYIHL------- 283
Query: 562 ESIQKYLWPRLCKLDQRTLYELHYQMI--TFGKVFCTKSKPNCNACPMRGEC 611
P K D L+ H ++ KV K K + +ACP+ G C
Sbjct: 284 ----NNKIPDDLKFDLNCLFVTHGKLCQSCTKKVGSDKRKSSNSACPLAGYC 331
>gi|225457138|ref|XP_002283633.1| PREDICTED: endonuclease III-like [Vitis vinifera]
Length = 310
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 61/113 (53%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYL 501
W+ V AD I N I+ G+ A IK L+ L+ G + LE+LRD+ D+ K L
Sbjct: 139 WQDVLAADSKSIENAIRCGGLAVTKASCIKKMLSCLLERKGKLCLEYLRDLTVDEIKTEL 198
Query: 502 LSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHL 554
F+G+G K+V CV + L FPVDT+V +I +GWVP + LHL
Sbjct: 199 SHFKGIGPKTVACVLMFHLQRDDFPVDTHVIQIGKAIGWVPAVADRKKAYLHL 251
>gi|336375725|gb|EGO04061.1| hypothetical protein SERLA73DRAFT_175790 [Serpula lacrymans var.
lacrymans S7.3]
gi|336388834|gb|EGO29978.1| hypothetical protein SERLADRAFT_458392 [Serpula lacrymans var.
lacrymans S7.9]
Length = 366
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 81/181 (44%), Gaps = 21/181 (11%)
Query: 432 RPEHTKDSL----DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLE 487
R +H+ D+ D+ A+ A + I G+ N A I+D L + + HG+ +L+
Sbjct: 157 RAKHSLDTAFGRNDFAAIAKAARPDVVAAIASGGLANKKAKTIQDILESVKQRHGAYNLQ 216
Query: 488 WLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLP 547
L DVP ++A L+S+ G+G K+ CV L +F VDT+V R++ LGWVP
Sbjct: 217 HLADVPDEEAMRELVSYNGVGPKTAACVLSFCLGRESFAVDTHVYRLSRLLGWVPQSADR 276
Query: 548 ESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPM 607
Q HL P Y LH M+ G++ K +CP+
Sbjct: 277 VLAQAHLDVTLP-----------------GELKYALHVMMVKHGRICSGCKKDGKGSCPL 319
Query: 608 R 608
+
Sbjct: 320 K 320
>gi|297733838|emb|CBI15085.3| unnamed protein product [Vitis vinifera]
Length = 310
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 61/113 (53%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYL 501
W+ V AD I N I+ G+ A IK L+ L+ G + LE+LRD+ D+ K L
Sbjct: 139 WQDVLAADSKSIENAIRCGGLAVTKASCIKKMLSCLLERKGKLCLEYLRDLTVDEIKTEL 198
Query: 502 LSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHL 554
F+G+G K+V CV + L FPVDT+V +I +GWVP + LHL
Sbjct: 199 SHFKGIGPKTVACVLMFHLQRDDFPVDTHVIQIGKAIGWVPAVADRKKAYLHL 251
>gi|397619559|gb|EJK65312.1| hypothetical protein THAOC_13838, partial [Thalassiosira oceanica]
Length = 527
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 88/186 (47%), Gaps = 29/186 (15%)
Query: 441 DWEAV-RCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKE 499
DWE V ++ +++A I+ G++ R++ L ++ + G + E+LRD D+ K+
Sbjct: 334 DWEQVAESSNASRVAAAIRCAGLSKTRTERMQLMLQKVKEERGKANFEFLRDCSSDEIKK 393
Query: 500 YLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
LL +G+G K+V CV L L FPVDT+V RI+ + WVP ES +L + P
Sbjct: 394 QLLQHKGMGPKTVSCVLLFALLKPEFPVDTHVLRISKQNRWVPASFSRESAYSYLNGVIP 453
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC---RHFAS 616
D+ L +LH ++ GK +CN C RG+ R F
Sbjct: 454 ----------------DEFKL-DLHCLLVAHGK--------HCNQCAARGKAQFPRDFDC 488
Query: 617 AFASSR 622
A+ R
Sbjct: 489 PLAAMR 494
>gi|229918737|ref|YP_002887383.1| endonuclease III [Exiguobacterium sp. AT1b]
gi|229470166|gb|ACQ71938.1| endonuclease III [Exiguobacterium sp. AT1b]
Length = 219
Score = 77.4 bits (189), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 80/170 (47%), Gaps = 26/170 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
EA+ ADV++I IK G+ A +K ++V +HG + VP D+A L
Sbjct: 63 EAMAAADVSEIEALIKRIGLYRNKAKNVKALSEKIVNEHGGI-------VPSDRAS--LE 113
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
+ G+G K+ V + H AF VDT+V R++ RLG + ++ L++ +P E
Sbjct: 114 ALPGVGRKTANVVLSVAFHEPAFAVDTHVERVSKRLGICRWKDNVRQVEDTLMKKFPREE 173
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
W +LH+Q I FG+ C +P C ACP+ CR
Sbjct: 174 ------WS-----------QLHHQFIFFGRYHCKAQRPGCEACPLLHMCR 206
>gi|224133424|ref|XP_002321564.1| predicted protein [Populus trichocarpa]
gi|222868560|gb|EEF05691.1| predicted protein [Populus trichocarpa]
Length = 309
Score = 77.4 bits (189), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 58/101 (57%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYL 501
WE V A+ I + I+ G+ A I++ L+ L+ G + LE+LRD+P + K L
Sbjct: 144 WENVLAAESKFIEDAIRCGGLAPTKAACIRNILSSLMEKKGRLCLEYLRDLPVAEIKAEL 203
Query: 502 LSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVP 542
F+G+G K+V CV + L FPVDT+V IA +GWVP
Sbjct: 204 SHFKGIGPKTVACVLMFNLQKDDFPVDTHVFEIAKAIGWVP 244
>gi|358400221|gb|EHK49552.1| hypothetical protein TRIATDRAFT_26345, partial [Trichoderma
atroviride IMI 206040]
Length = 268
Score = 76.3 bits (186), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 75/170 (44%), Gaps = 19/170 (11%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
+W+A+ +K+ TIK G++ + + I + L + +G+ L L + D+A
Sbjct: 102 NWDAIVQGGTDKLQQTIKSGGLSVVKSKVIMNILRQTKDQYGTYSLNHLLNASNDEAMRE 161
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
LLSF+G+G K+ CV L L +F VDT+V RI+ LGW P + E Q HL P
Sbjct: 162 LLSFQGVGPKTASCVLLFCLQRDSFAVDTHVYRISGLLGWRPGEANREEAQAHLEATVP- 220
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVF--CTKSKPNCNACPMR 608
Y LH M+T G+ C C +R
Sbjct: 221 ----------------DEDKYGLHVLMVTHGRTCDECKAGGKIAGKCALR 254
>gi|356513571|ref|XP_003525486.1| PREDICTED: endonuclease III-like [Glycine max]
Length = 284
Score = 76.3 bits (186), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 56/101 (55%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYL 501
WE V A+ + N I+ G+ A IK+ L L G + LE+LRD+ D+ K L
Sbjct: 117 WEQVLWAESKDVENAIRCGGLAPTKASCIKNVLRCLRERRGELCLEYLRDLSVDEVKAEL 176
Query: 502 LSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVP 542
F+G+G K+V CV + L FPVDT++ IA +GWVP
Sbjct: 177 SLFKGIGPKTVACVLMFNLQQDDFPVDTHIFEIAKTMGWVP 217
>gi|424780567|ref|ZP_18207440.1| Endonuclease III [Catellicoccus marimammalium M35/04/3]
gi|422842969|gb|EKU27416.1| Endonuclease III [Catellicoccus marimammalium M35/04/3]
Length = 218
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 78/175 (44%), Gaps = 26/175 (14%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
A + + + IK G+ A I +LV + G VP D+ + L+S G+
Sbjct: 68 ASIEDVISKIKTIGLYRNKAKNIIACSQKLVEEFGG-------KVPADRKQ--LMSLPGV 118
Query: 508 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 567
G K+ V + + AF VDT++ RIA RL VPL + ++ + + P
Sbjct: 119 GRKTANVVLSVAFNIPAFAVDTHIQRIAKRLQIVPLDASVDEVEKTITSIMP-------- 170
Query: 568 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSR 622
+ T LH+Q+I FG+ CT KP C+ CP EC ++ S A +
Sbjct: 171 ---------KETWNHLHHQLIYFGRYLCTAKKPKCDQCPFTKECLYYESEVAEKK 216
>gi|448684914|ref|ZP_21693001.1| endonuclease III [Haloarcula japonica DSM 6131]
gi|445782845|gb|EMA33686.1| endonuclease III [Haloarcula japonica DSM 6131]
Length = 277
Score = 75.5 bits (184), Expect = 1e-10, Method: Composition-based stats.
Identities = 65/221 (29%), Positives = 97/221 (43%), Gaps = 26/221 (11%)
Query: 417 DSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNR 476
D L R+ G ++ E DS A+ AD ++A TI G+ N + RI R
Sbjct: 76 DELMRRY--GGDEEANSEGDTDSDLARALADADQPELAETISSAGLYNQKSERIIALAQR 133
Query: 477 LVRDHG--SVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLA-FPVDTNVGR 533
+ ++G S E++R+ P+ + LL G+G K+ +CV L FPVDT+V R
Sbjct: 134 ICEEYGGESGFDEFVREEDPEAVRSTLLDMNGVGPKTADCVLLFAGGRGGVFPVDTHVHR 193
Query: 534 IAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKV 593
IA R+G P E+++ +L P + C H MI FG+
Sbjct: 194 IARRMGLAPADADHETVREYLERDVPAEK----------CGFG-------HTAMIQFGRE 236
Query: 594 FCTKSKPNC----NACPMRGECRHFASAFASSRLALPGPEE 630
+C+ KP C +ACP+ G C AS + P E
Sbjct: 237 YCSARKPACLDDPDACPLAGHCDQIGVYPASGEVVDPAEAE 277
>gi|55378639|ref|YP_136489.1| endonuclease III [Haloarcula marismortui ATCC 43049]
gi|55231364|gb|AAV46783.1| endonuclease III [Haloarcula marismortui ATCC 43049]
Length = 278
Score = 75.5 bits (184), Expect = 1e-10, Method: Composition-based stats.
Identities = 63/222 (28%), Positives = 97/222 (43%), Gaps = 34/222 (15%)
Query: 399 SKSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDW-EAVRCADVNKIANTI 457
S++ S + S+ +D GG+ E DS D A+ AD ++A TI
Sbjct: 63 SQNTSDKASQPAHDDL-------MARYGGGEDANSEGDIDSTDLARALADADQPELAETI 115
Query: 458 KERGMNNMLAGRIKDFLNRLVRDHGS---VDLEWLRDVPPDKAKEYLLSFRGLGLKSVEC 514
G+ N + RI R+ ++G D ++RD P+ + LL G+G K+ +C
Sbjct: 116 SSAGLYNQKSERIIALAQRICEEYGGEAGFD-AFVRDSDPEAVRSTLLDMNGVGPKTADC 174
Query: 515 VRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLC 573
V L FPVDT+V RIA R+G P E+++ +L P + C
Sbjct: 175 VLLFAGGRGGVFPVDTHVHRIARRMGLAPADADHETVRAYLERDVPAAK----------C 224
Query: 574 KLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGEC 611
H +I FG+ +C+ KP C +ACP+ G C
Sbjct: 225 GFG-------HTAIIQFGREYCSARKPACLDDPDACPLAGHC 259
>gi|448626650|ref|ZP_21671429.1| endonuclease III [Haloarcula vallismortis ATCC 29715]
gi|445760262|gb|EMA11526.1| endonuclease III [Haloarcula vallismortis ATCC 29715]
Length = 277
Score = 75.1 bits (183), Expect = 2e-10, Method: Composition-based stats.
Identities = 54/182 (29%), Positives = 83/182 (45%), Gaps = 24/182 (13%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVD--LEWLRDVPPDKAKEYLLSFRGLGL 509
++A TI G+ N + RI R+ ++G D E++R+ PD+ + LL G+G
Sbjct: 109 ELAETISSAGLYNQKSKRIITLAQRICEEYGGEDGFDEFVREGDPDEVRSTLLDMNGVGP 168
Query: 510 KSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYL 568
K+ +CV L FPVDT+V RI R+G P + E+++ +L P +
Sbjct: 169 KTADCVLLFAGGRGGVFPVDTHVHRITRRMGLAPAEADHETVREYLERDVPAAK------ 222
Query: 569 WPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGECRHFASAFASSRLA 624
C H MI FG+ +C+ KP C +ACP+ G C AS +
Sbjct: 223 ----CGFG-------HTAMIQFGREYCSARKPACLDDPDACPLAGHCDQVGVYPASGDVV 271
Query: 625 LP 626
P
Sbjct: 272 DP 273
>gi|440476191|gb|ELQ44813.1| HhH-GPD family base excision DNA repair protein [Magnaporthe oryzae
Y34]
gi|440486908|gb|ELQ66733.1| HhH-GPD family base excision DNA repair protein [Magnaporthe oryzae
P131]
Length = 375
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 87/213 (40%), Gaps = 31/213 (14%)
Query: 411 QNDFDWDSLRRQV---EANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLA 467
QN D +S R + A GG+ + +W AV V K+ I+ G++ + +
Sbjct: 171 QNTSDSNSARAKRSMDRAYGGRHD---------NWPAVVAGGVGKLEEAIRCGGLSVVKS 221
Query: 468 GRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPV 527
I L + +GS L+ LR+ ++A +L+F+G+G K+ CV L L +F V
Sbjct: 222 RVIMSILETCAQRYGSYSLDHLREASDEEAMREMLAFKGVGPKTASCVLLFCLGRESFAV 281
Query: 528 DTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQM 587
DT+V R+ LGW P E LHL P Y LH +
Sbjct: 282 DTHVHRLTGMLGWRPAGTSREEAHLHLDARIP-----------------DEDKYGLHVLL 324
Query: 588 ITFGK--VFCTKSKPNCNACPMRGECRHFASAF 618
IT GK C + C +R R F
Sbjct: 325 ITHGKRCAECKAGGKSSGKCELRRALREKDEGF 357
>gi|429220080|ref|YP_007181724.1| endoIII-related endonuclease [Deinococcus peraridilitoris DSM
19664]
gi|429130943|gb|AFZ67958.1| putative endoIII-related endonuclease [Deinococcus peraridilitoris
DSM 19664]
Length = 263
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 82/175 (46%), Gaps = 15/175 (8%)
Query: 440 LDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKE 499
+ WE V ADV +A I + A I+ L + G ++++L D+P ++
Sbjct: 96 VSWEGVEQADVTALAEAISPSNFAEVKAPNIQRTLRAIREARGEYNIDFLADLPVEEGLR 155
Query: 500 YLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
+LL+ G+GLK+ V L PVDT+V R++ R+G + + + E+ LL L P
Sbjct: 156 WLLALPGVGLKTATLVLLFCFRKSVLPVDTHVHRVSQRVGLIGPKVMHEAAHRLLLALLP 215
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
+ LY H ++T G+ CT S+P C+ C +R C ++
Sbjct: 216 PEPA---------------LLYNFHLNLLTHGQKICTFSRPRCSKCVLREVCDYY 255
>gi|229581431|ref|YP_002839830.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
Y.N.15.51]
gi|228012147|gb|ACP47908.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
Y.N.15.51]
Length = 233
Score = 74.7 bits (182), Expect = 2e-10, Method: Composition-based stats.
Identities = 55/212 (25%), Positives = 92/212 (43%), Gaps = 29/212 (13%)
Query: 411 QNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRI 470
QN D +L+ +E PE D AD++ I N +K G+ A R+
Sbjct: 46 QNSTDKSALKAYLELEKKVGVTPEKLSD---------ADLSDIENALKISGLYKTKAKRL 96
Query: 471 KDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTN 530
K ++ + + L P +E LL F G+G K+ + V L + FP+DT+
Sbjct: 97 KIISKIILEKYNGLIDNLLNSSNP---REELLKFEGIGEKTADVVLLTCRGYEVFPIDTH 153
Query: 531 VGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITF 590
+ R++ RLG VP+ E + L EL+ + L +LH+ +I
Sbjct: 154 ITRVSKRLGIVPMNAKYELISSTLKELFSAYD-----------------LLQLHHLLIAH 196
Query: 591 GKVFCTKSKPNCNACPMRGECRHFASAFASSR 622
G+ C KP CN+C ++ C +++ +R
Sbjct: 197 GRQICKARKPLCNSCIIKECCEYYSHRDGEAR 228
>gi|326510563|dbj|BAJ87498.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 282
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 60/113 (53%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYL 501
W+ V + + + I+ G+ A RI+ L + G++ LE+LRD+ D+ K L
Sbjct: 114 WDQVVDEEGMGLEDAIRCGGLAATKAARIRAMLRGVREKRGAICLEYLRDLSVDEVKREL 173
Query: 502 LSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHL 554
F+G+G K+V CV + L FPVDT+V RI LGWVP E +H+
Sbjct: 174 SQFKGIGPKTVACVLMFYLQKDDFPVDTHVLRITKALGWVPPTATREKAYIHM 226
>gi|395217179|ref|ZP_10401538.1| HhH-GPD family protein [Pontibacter sp. BAB1700]
gi|394455098|gb|EJF09644.1| HhH-GPD family protein [Pontibacter sp. BAB1700]
Length = 235
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 79/181 (43%), Gaps = 15/181 (8%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
DWE V A +++A+ + A +I+ L + D G +++++L D+P D+A +
Sbjct: 65 DWEGVLNAPEDELADAVSTTRYPLQKAPQIQQTLRMIKEDRGEINIDFLADLPIDEAMAW 124
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
L G+G K+ + L PVDT+V R++ R+G + + LLE+ P
Sbjct: 125 LTRLPGVGPKTATLLLLFNFKKPVLPVDTHVFRVSQRVGLIGAKITANKAHDVLLEMLPK 184
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFAS 620
D L+ H + G+ CT S P C C + G C +++ A
Sbjct: 185 ---------------DATELFNFHKHLFWHGQKVCTWSYPKCEKCVLNGICNYYSQVRAK 229
Query: 621 S 621
Sbjct: 230 G 230
>gi|389622827|ref|XP_003709067.1| HhH-GPD family base excision DNA repair protein [Magnaporthe oryzae
70-15]
gi|351648596|gb|EHA56455.1| HhH-GPD family base excision DNA repair protein [Magnaporthe oryzae
70-15]
Length = 382
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 87/213 (40%), Gaps = 31/213 (14%)
Query: 411 QNDFDWDSLRRQV---EANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLA 467
QN D +S R + A GG+ + +W AV V K+ I+ G++ + +
Sbjct: 178 QNTSDSNSARAKRSMDRAYGGRHD---------NWPAVVAGGVGKLEEAIRCGGLSVVKS 228
Query: 468 GRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPV 527
I L + +GS L+ LR+ ++A +L+F+G+G K+ CV L L +F V
Sbjct: 229 RVIMSILETCAQRYGSYSLDHLREASDEEAMREMLAFKGVGPKTASCVLLFCLGRESFAV 288
Query: 528 DTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQM 587
DT+V R+ LGW P E LHL P Y LH +
Sbjct: 289 DTHVHRLTGMLGWRPAGTSREEAHLHLDARIP-----------------DEDKYGLHVLL 331
Query: 588 ITFGK--VFCTKSKPNCNACPMRGECRHFASAF 618
IT GK C + C +R R F
Sbjct: 332 ITHGKRCAECKAGGKSSGKCELRRALREKDEGF 364
>gi|448637456|ref|ZP_21675694.1| endonuclease III [Haloarcula sinaiiensis ATCC 33800]
gi|445764303|gb|EMA15458.1| endonuclease III [Haloarcula sinaiiensis ATCC 33800]
Length = 278
Score = 74.3 bits (181), Expect = 3e-10, Method: Composition-based stats.
Identities = 63/222 (28%), Positives = 97/222 (43%), Gaps = 34/222 (15%)
Query: 399 SKSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDW-EAVRCADVNKIANTI 457
S++ S + S+ +D GG+ E +S D A+ AD ++A TI
Sbjct: 63 SQNTSDKASQPAHDDL-------MARYGGGEDTNSEGNINSTDLARALADADQPELAETI 115
Query: 458 KERGMNNMLAGRIKDFLNRLVRDHGS---VDLEWLRDVPPDKAKEYLLSFRGLGLKSVEC 514
G+ N + RI R+ ++G D ++RD +K + LL G+G K+ +C
Sbjct: 116 SSAGLYNQKSERIIALAQRICEEYGGEAGFD-AFVRDSDSEKVRSTLLDMNGVGPKTADC 174
Query: 515 VRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLC 573
V L FPVDT+V RIA R+G P E+++ +L P + C
Sbjct: 175 VLLFAGGRGGVFPVDTHVHRIARRMGLAPADADHETVRAYLERDVPAAK----------C 224
Query: 574 KLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGEC 611
H MI FG+ +C+ KP C +ACP+ G C
Sbjct: 225 GFG-------HTAMIQFGREYCSARKPACLDDPDACPLAGHC 259
>gi|403178239|ref|XP_003336685.2| hypothetical protein PGTG_18481 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375164069|gb|EFP92266.2| hypothetical protein PGTG_18481 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 424
Score = 73.9 bits (180), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 90/184 (48%), Gaps = 15/184 (8%)
Query: 388 SKELNGIDDATSKSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLD------ 441
++E G++D S++ +T + + D L R + + + K +LD
Sbjct: 79 TEEAEGVEDLASRTIATECGEVGEV---LDGLVRTILSQHTSRANSSRAKQALDQHFGTG 135
Query: 442 -WEAVRCADVNKIANTIKER--GMNNMLAGRIKDFLNRL-VRDHGSVDLEWLRDVPPDKA 497
+ A+R A V+ I +++ G+ + I LN + + + + LE+LR +P +A
Sbjct: 136 NYHAIRRASVSSITAVLQDARVGLAARKSTTIHALLNHIHLNLNPDLSLEFLRYLPDSEA 195
Query: 498 KEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLP--ESLQLHLL 555
E L SF+G+G K+ CV L L FPVDT+V RI LGW+P +P ES HL
Sbjct: 196 METLTSFKGVGAKTASCVLLFCLGRNFFPVDTHVFRITKALGWLPPRPTATRESAFKHLN 255
Query: 556 ELYP 559
+ P
Sbjct: 256 QAVP 259
>gi|125596638|gb|EAZ36418.1| hypothetical protein OsJ_20749 [Oryza sativa Japonica Group]
Length = 277
Score = 73.9 bits (180), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 56/104 (53%)
Query: 451 NKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLK 510
++ + I+ G+ A RI+ L + G + LE+LRD+ D+ K L F+G+G K
Sbjct: 118 KRLEDAIRCGGLAATKAARIRAMLRGVRERRGKICLEYLRDLSVDEVKTELSRFKGIGPK 177
Query: 511 SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHL 554
+V CV + L FPVDT+V RI +GWVP E LHL
Sbjct: 178 TVACVLMFYLQKDDFPVDTHVLRITNAIGWVPATASRERAYLHL 221
>gi|385776592|ref|YP_005649160.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
REY15A]
gi|323475340|gb|ADX85946.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
REY15A]
Length = 233
Score = 73.9 bits (180), Expect = 4e-10, Method: Composition-based stats.
Identities = 55/212 (25%), Positives = 92/212 (43%), Gaps = 29/212 (13%)
Query: 411 QNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRI 470
QN D +L+ +E PE D AD++ I N +K G+ A R+
Sbjct: 46 QNSTDKSALKAYLELEKKVGVTPEKLSD---------ADLSNIENALKISGLYKTKAKRL 96
Query: 471 KDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTN 530
K ++ + + L P +E LL F G+G K+ + V L + FP+DT+
Sbjct: 97 KIISKIILEKYNGLIDNLLNSSNP---REELLKFEGIGEKTADVVLLTCRGYEVFPIDTH 153
Query: 531 VGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITF 590
+ R++ RLG VP+ E + L EL+ + L +LH+ +I
Sbjct: 154 ITRVSKRLGIVPMNAKYELISSTLKELFSAYD-----------------LLQLHHLLIAH 196
Query: 591 GKVFCTKSKPNCNACPMRGECRHFASAFASSR 622
G+ C KP CN+C ++ C +++ +R
Sbjct: 197 GRQTCKARKPLCNSCIIKECCEYYSHRDGEAR 228
>gi|298252264|ref|ZP_06976067.1| HhH-GPD family protein [Ktedonobacter racemifer DSM 44963]
gi|297546856|gb|EFH80724.1| HhH-GPD family protein [Ktedonobacter racemifer DSM 44963]
Length = 242
Score = 73.9 bits (180), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 81/185 (43%), Gaps = 26/185 (14%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRL---------VRDHGSVDLEWLRDV 492
WE VR A +++A IK G+ N+ A RI+ L+ L R + + L+
Sbjct: 65 WEEVRDAPTHEVAEAIKSGGLANVKAPRIQSALHTLSEWQRAKGDTRSLSAFLQDELKGQ 124
Query: 493 PPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQL 552
P ++A YL G+G K+ CV L + P+DT++ R+ RLG + P + Q
Sbjct: 125 PLEEAWRYLQQMPGVGPKTAACVLLFNMGRPLMPIDTHLHRLTHRLGLI--GPKVSADQA 182
Query: 553 HLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
H + L K L P Y LH +I G+ C +P C CP+ EC
Sbjct: 183 HTIFL--------KALPPEWA-------YTLHVNLIRHGRTICHAQRPKCPQCPLLSECA 227
Query: 613 HFASA 617
+ S
Sbjct: 228 YAGSV 232
>gi|51535148|dbj|BAD37860.1| HhH-GPD base excision DNA repair protein-related-like [Oryza sativa
Japonica Group]
gi|51535812|dbj|BAD37897.1| HhH-GPD base excision DNA repair protein-related-like [Oryza sativa
Japonica Group]
gi|218197872|gb|EEC80299.1| hypothetical protein OsI_22321 [Oryza sativa Indica Group]
Length = 277
Score = 73.9 bits (180), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 56/104 (53%)
Query: 451 NKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLK 510
++ + I+ G+ A RI+ L + G + LE+LRD+ D+ K L F+G+G K
Sbjct: 118 KRLEDAIRCGGLAATKAARIRAMLRGVRERRGKICLEYLRDLSVDEVKTELSRFKGIGPK 177
Query: 511 SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHL 554
+V CV + L FPVDT+V RI +GWVP E LHL
Sbjct: 178 TVACVLMFYLQKDDFPVDTHVLRITNAIGWVPATASRERAYLHL 221
>gi|227831027|ref|YP_002832807.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
L.S.2.15]
gi|284998523|ref|YP_003420291.1| HhH-GPD family protein [Sulfolobus islandicus L.D.8.5]
gi|227457475|gb|ACP36162.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
L.S.2.15]
gi|284446419|gb|ADB87921.1| HhH-GPD family protein [Sulfolobus islandicus L.D.8.5]
Length = 233
Score = 73.9 bits (180), Expect = 4e-10, Method: Composition-based stats.
Identities = 55/212 (25%), Positives = 92/212 (43%), Gaps = 29/212 (13%)
Query: 411 QNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRI 470
QN D +L+ +E PE D AD++ I N +K G+ A R+
Sbjct: 46 QNSTDKSALKAYLELEKKVGVTPEKLSD---------ADLSDIENALKISGLYKTKAKRL 96
Query: 471 KDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTN 530
K ++ + + L P +E LL F G+G K+ + V L + FP+DT+
Sbjct: 97 KIISKIILEKYNGLIDNLLNSSNP---REELLKFEGIGEKTADVVLLTCRGYEVFPIDTH 153
Query: 531 VGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITF 590
+ R++ RLG VP+ E + L EL+ + L +LH+ +I
Sbjct: 154 ITRVSKRLGIVPMNAKYELISSTLKELFSAYD-----------------LLQLHHLLIAH 196
Query: 591 GKVFCTKSKPNCNACPMRGECRHFASAFASSR 622
G+ C KP CN+C ++ C +++ +R
Sbjct: 197 GRQTCKARKPLCNSCIIKECCEYYSHRDGEAR 228
>gi|448681086|ref|ZP_21691232.1| endonuclease III [Haloarcula argentinensis DSM 12282]
gi|445768144|gb|EMA19231.1| endonuclease III [Haloarcula argentinensis DSM 12282]
Length = 277
Score = 73.6 bits (179), Expect = 5e-10, Method: Composition-based stats.
Identities = 60/207 (28%), Positives = 93/207 (44%), Gaps = 24/207 (11%)
Query: 427 GGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHG--SV 484
G + E DS A+ AD ++A TI G+ N + RI R+ ++G S
Sbjct: 84 GDENASSEGDTDSDLARALADADQPELAETISSAGLYNQKSERIIALAQRICEEYGGESG 143
Query: 485 DLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPL 543
E++R+ P++ + LL G+G K+ +CV L FPVDT+V RIA R+G P
Sbjct: 144 FDEFVRESDPEEVRSTLLDMNGVGPKTADCVLLFAGGRGGVFPVDTHVHRIARRMGLAPA 203
Query: 544 QPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC- 602
E+++ +L P + C H MI FG+ +C+ KP C
Sbjct: 204 DADHETVREYLERDVPAEK----------CGFG-------HTAMIQFGREYCSARKPACL 246
Query: 603 ---NACPMRGECRHFASAFASSRLALP 626
+ACP+ G C ++ +A P
Sbjct: 247 DDPDACPLAGHCDQVGVYPSTGEVADP 273
>gi|126458694|ref|YP_001054972.1| HhH-GPD family protein [Pyrobaculum calidifontis JCM 11548]
gi|126248415|gb|ABO07506.1| HhH-GPD family protein [Pyrobaculum calidifontis JCM 11548]
Length = 219
Score = 73.6 bits (179), Expect = 5e-10, Method: Composition-based stats.
Identities = 54/169 (31%), Positives = 84/169 (49%), Gaps = 23/169 (13%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
EAV +++A IK GM + A I+ + +R V E LR++ P +A+++LL
Sbjct: 68 EAVLQLSEDELAELIKPAGMYRIRARNIRALADAFIRH--KVTPEKLREMGPVEARKFLL 125
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
S G+G K+ + + L+ L AFPVDT++ RIA R G V + +E P
Sbjct: 126 SLPGVGEKTADVI-LVNLGLPAFPVDTHIRRIAKRWGIVGNH---GEISRRFMEAVPP-- 179
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
+KYL E+H ++I FG+ CT P C+ CP+ +C
Sbjct: 180 --EKYL-------------EVHLKLIQFGRDICTARAPKCHICPIGSKC 213
>gi|227828269|ref|YP_002830049.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
M.14.25]
gi|229579909|ref|YP_002838308.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
Y.G.57.14]
gi|238620462|ref|YP_002915288.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
M.16.4]
gi|227460065|gb|ACP38751.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
M.14.25]
gi|228010624|gb|ACP46386.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
Y.G.57.14]
gi|238381532|gb|ACR42620.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
M.16.4]
Length = 233
Score = 73.6 bits (179), Expect = 5e-10, Method: Composition-based stats.
Identities = 55/212 (25%), Positives = 92/212 (43%), Gaps = 29/212 (13%)
Query: 411 QNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRI 470
QN D +L+ +E PE D AD++ I N +K G+ A R+
Sbjct: 46 QNSTDKSALKAYLELEKKVGVTPEKLSD---------ADLSDIENALKISGLYKTKAKRL 96
Query: 471 KDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTN 530
K ++ + + L P +E LL F G+G K+ + V L + FP+DT+
Sbjct: 97 KIISKIILEKYNGLIDNLLNSSNP---REELLKFEGIGEKTADVVLLTCRGYEVFPIDTH 153
Query: 531 VGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITF 590
+ R++ RLG VP+ E + L EL+ + L +LH+ +I
Sbjct: 154 ITRVSKRLGIVPMNAKYELISSTLKELFSAYD-----------------LLQLHHLLIAH 196
Query: 591 GKVFCTKSKPNCNACPMRGECRHFASAFASSR 622
G+ C KP CN+C ++ C +++ +R
Sbjct: 197 GRQTCKARKPLCNSCIIKECCEYYSHRDGEAR 228
>gi|448671097|ref|ZP_21687089.1| endonuclease III [Haloarcula amylolytica JCM 13557]
gi|445766179|gb|EMA17313.1| endonuclease III [Haloarcula amylolytica JCM 13557]
Length = 278
Score = 73.6 bits (179), Expect = 5e-10, Method: Composition-based stats.
Identities = 56/187 (29%), Positives = 84/187 (44%), Gaps = 26/187 (13%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGS---VDLEWLRDVPPDKAKEYLLSF 504
AD ++A TI G+ N + RI R+ ++G D E++RD P+ + LL
Sbjct: 106 ADQPELAETISSAGLYNQKSERIIALAQRICEEYGGEAGFD-EFVRDSDPEAVRSTLLDM 164
Query: 505 RGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLES 563
G+G K+ +CV L FPVDT+V RIA R+G P E+++ +L P +
Sbjct: 165 NGVGPKTADCVLLFAGGRGGVFPVDTHVHRIARRMGLAPPDADHETVREYLERDVPAAK- 223
Query: 564 IQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGECRHFASAFA 619
C H MI FG+ +C+ KP C +ACP+ G C A
Sbjct: 224 ---------CGFG-------HTAMIQFGREYCSARKPACLDDPDACPLAGHCDQVGVYPA 267
Query: 620 SSRLALP 626
+ + P
Sbjct: 268 ADEITDP 274
>gi|378733828|gb|EHY60287.1| endonuclease III [Exophiala dermatitidis NIH/UT8656]
Length = 442
Score = 73.6 bits (179), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 74/173 (42%), Gaps = 19/173 (10%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYL 501
WEA+ K+ IK G++ + + I LN++ +G L+ L + A +
Sbjct: 258 WEAIAAGGQAKLQEAIKSGGLSAVKSKVIISILNQVYEKYGVYSLDHLHSASSEDAMREM 317
Query: 502 LSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 561
LSF+G+G K+ CV L L +F VDT+V RI LGW P + E Y L
Sbjct: 318 LSFQGVGPKTASCVLLFCLQRESFAVDTHVWRITGLLGWRPKSASRD-------ETYAHL 370
Query: 562 ESIQKYLWPRLCKLDQRTLYELHYQMITFGKVF--CTKSKPNCNACPMRGECR 612
+S K+ Y LH ++T GK C N C +R R
Sbjct: 371 DS----------KIPDEDKYGLHILLVTHGKRCDECKAGGKNLGRCELRKAFR 413
>gi|403170480|ref|XP_003329823.2| hypothetical protein PGTG_11760 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168743|gb|EFP85404.2| hypothetical protein PGTG_11760 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 352
Score = 73.6 bits (179), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 89/184 (48%), Gaps = 15/184 (8%)
Query: 388 SKELNGIDDATSKSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLD------ 441
++E G++D S++ +T + + D L R + + + K +LD
Sbjct: 77 TEEAEGVEDLASRTIATECGEVGEV---LDGLVRTILSQHTSRANSSRAKQALDQHFGTG 133
Query: 442 -WEAVRCADVNKIANTIKER--GMNNMLAGRIKDFLNRL-VRDHGSVDLEWLRDVPPDKA 497
+ A+R A V+ I +++ G+ + I LN + + + + LE+LR +P +A
Sbjct: 134 NYHAIRRASVSSITAVLQDARVGLAARKSTTIHALLNHIHLNLNPDLSLEFLRYLPDSEA 193
Query: 498 KEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLP--ESLQLHLL 555
E L SF+G+G K+ CV L L FPVDT+V RI LGW+P P ES HL
Sbjct: 194 METLTSFKGVGAKTASCVLLFCLGRNFFPVDTHVFRITKALGWLPPGPTATRESAFKHLN 253
Query: 556 ELYP 559
+ P
Sbjct: 254 QAVP 257
>gi|358060340|dbj|GAA93745.1| hypothetical protein E5Q_00391 [Mixia osmundae IAM 14324]
Length = 1544
Score = 73.6 bits (179), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 60/114 (52%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
D+ A++ A V + +I G+ N+ A IK L+++ G +DL +L D+
Sbjct: 643 DYAAIQAASVEDVTESIATGGLANVKAKVIKKVLDQVQEKRGKLDLTYLHDMEDIDVMRE 702
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHL 554
L+SF G+G K+ CV L L +F VDT+V R+ L WVP + E+ HL
Sbjct: 703 LISFDGVGFKTASCVLLFCLGRESFAVDTHVFRLTKALNWVPAKADRETTFQHL 756
>gi|345560267|gb|EGX43392.1| hypothetical protein AOL_s00215g128 [Arthrobotrys oligospora ATCC
24927]
Length = 531
Score = 73.6 bits (179), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 7/111 (6%)
Query: 439 SLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRD-------HGSVDLEWLRD 491
++W V DV ++ I++ G+ N+ + IK L + G + L++L +
Sbjct: 172 GVNWSLVHRRDVKELYKAIEKGGLANIKSKAIKGILEEVCEGTKKRGGKDGEISLDYLHE 231
Query: 492 VPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVP 542
D+ E L+ F+G+G+K+ CV + L AFPVDT+V RI+ LGWVP
Sbjct: 232 KGDDEVMETLMGFKGVGVKTATCVLMFCLRRSAFPVDTHVFRISKLLGWVP 282
>gi|260655074|ref|ZP_05860562.1| base excision DNA repair protein, HhH-GPD family [Jonquetella
anthropi E3_33 E1]
gi|424844920|ref|ZP_18269531.1| putative endoIII-related endonuclease [Jonquetella anthropi DSM
22815]
gi|260630185|gb|EEX48379.1| base excision DNA repair protein, HhH-GPD family [Jonquetella
anthropi E3_33 E1]
gi|363986358|gb|EHM13188.1| putative endoIII-related endonuclease [Jonquetella anthropi DSM
22815]
Length = 234
Score = 73.6 bits (179), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 70/160 (43%), Gaps = 17/160 (10%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
++ + I+ G+ + + I L G L LR P +A ++ S +G+G+K+
Sbjct: 87 ELISLIRPAGLCDSKSATIIRVLGAAKDLTGQYSLGLLRKKKPAEAWNFMTSIKGVGVKT 146
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
CV + L AFPVDT+V R R+GW P + P ++Q + L P
Sbjct: 147 AACVMVFDLGFPAFPVDTHVARFCRRMGWAPEKASPAAIQEMMEGLVP------------ 194
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
D R H +IT G+ C P C C +RG C
Sbjct: 195 ----DSRK-AGAHLNIITHGRRVCKARGPLCGDCLLRGLC 229
>gi|186511539|ref|NP_001118934.1| uncharacterized protein [Arabidopsis thaliana]
gi|332657049|gb|AEE82449.1| uncharacterized protein [Arabidopsis thaliana]
Length = 78
Score = 73.6 bits (179), Expect = 5e-10, Method: Composition-based stats.
Identities = 32/46 (69%), Positives = 38/46 (82%)
Query: 869 VFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQ 914
+FADH SSL PI+VPRE +W+LPRRTV+FGTSIP+IFK GIQ
Sbjct: 30 MFADHASSLNPIDVPRELIWDLPRRTVFFGTSIPTIFKDSKEAGIQ 75
>gi|258406277|ref|YP_003199019.1| HhH-GPD family protein [Desulfohalobium retbaense DSM 5692]
gi|257798504|gb|ACV69441.1| HhH-GPD family protein [Desulfohalobium retbaense DSM 5692]
Length = 218
Score = 73.2 bits (178), Expect = 7e-10, Method: Composition-based stats.
Identities = 53/193 (27%), Positives = 83/193 (43%), Gaps = 24/193 (12%)
Query: 415 DWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFL 474
+W+++RR + A + +LD E ++A I+ G + AGRIK+FL
Sbjct: 44 NWENVRRALNALRAQNLLSAPALAALDTE--------ELAALIRPAGYYRVKAGRIKNFL 95
Query: 475 NRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRI 534
R D L+ +P + +E LL G+G ++ + + L L F VDT RI
Sbjct: 96 -RFFEHEAGFDFTVLQALPTPEIRERLLGVNGIGPETADSIALYALDKPTFVVDTYTARI 154
Query: 535 AVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVF 594
R G +P + LQ + E P D E H Q++ GK +
Sbjct: 155 FGRHGQIPEEISYADLQAYFTEALPE---------------DTALFNEFHAQIVRVGKHW 199
Query: 595 CTKSKPNCNACPM 607
C K +P C+ CP+
Sbjct: 200 CKKKQPQCHRCPL 212
>gi|310800884|gb|EFQ35777.1| base excision DNA repair protein [Glomerella graminicola M1.001]
Length = 389
Score = 72.8 bits (177), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 76/175 (43%), Gaps = 19/175 (10%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
+WE + V+K+ IK G++ + + I LN++ +GS L+ L + ++A +
Sbjct: 217 EWEKIVEGGVHKLQEAIKCGGLSQVKSKVIIGILNQVKEKYGSYTLDHLFNATNEEAMQE 276
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
L+SF+G+G K+ CV L L +F VDT+V RI LGW P + HL P
Sbjct: 277 LISFQGVGPKTASCVLLFCLQRESFAVDTHVWRITGLLGWRPKSASRDETHAHLDVRIP- 335
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVF--CTKSKPNCNACPMRGECRH 613
Y LH ++ GKV C + C +R R
Sbjct: 336 ----------------DEDKYGLHILLVKHGKVCDECKAGGKSIGKCELRKAFRQ 374
>gi|452208019|ref|YP_007488141.1| endonuclease III [Natronomonas moolapensis 8.8.11]
gi|452084119|emb|CCQ37452.1| endonuclease III [Natronomonas moolapensis 8.8.11]
Length = 271
Score = 72.4 bits (176), Expect = 1e-09, Method: Composition-based stats.
Identities = 51/169 (30%), Positives = 79/169 (46%), Gaps = 24/169 (14%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVD--LEWLRDVPPDKAKEYLLSFRGLGL 509
++A TI G+ N + RI D R++ ++G ++R+ PP + +E LL G+G
Sbjct: 97 ELAETISSAGLYNQKSKRIIDIAERVLAEYGDTAGFDRFVREEPPSEVRETLLEMNGVGP 156
Query: 510 KSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYL 568
K+ +CV L FPVDT+V RIA RLG P E+++ ++++ +
Sbjct: 157 KTADCVLLFAGGRGGVFPVDTHVHRIARRLGIAPADADHEAVR----------DALETAV 206
Query: 569 WPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGECRH 613
C H MI FG+ +CT P C +ACPM C
Sbjct: 207 PEEKCGFG-------HTAMIQFGREYCTARTPACLEDPDACPMADVCEQ 248
>gi|409048228|gb|EKM57706.1| hypothetical protein PHACADRAFT_251498 [Phanerochaete carnosa
HHB-10118-sp]
Length = 323
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 82/184 (44%), Gaps = 38/184 (20%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDV-----PPD 495
++EA+ A +++ + ++ G+ N A I+ L+ + HGS L+ L V P +
Sbjct: 124 NFEAIVNAPKSELVDALRTGGLANKKAEVIQRILHEVKERHGSYSLQHLAGVVESQEPGE 183
Query: 496 KAKEY--------LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLP 547
+AK + L+S+ G+G K+ CV L L +F VDT+V R++ LGWVP +
Sbjct: 184 EAKVFSDEDAMKELVSYNGVGPKTASCVLLFCLGRASFAVDTHVFRLSRLLGWVPARANR 243
Query: 548 ESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPM 607
+ Q HL P Y LH M+ G+ CN C
Sbjct: 244 VTAQAHLDLRVP-----------------NDLKYGLHVLMVGHGR--------QCNGCRG 278
Query: 608 RGEC 611
RGEC
Sbjct: 279 RGEC 282
>gi|448411957|ref|ZP_21576313.1| endonuclease III [Halosimplex carlsbadense 2-9-1]
gi|445669891|gb|ELZ22499.1| endonuclease III [Halosimplex carlsbadense 2-9-1]
Length = 279
Score = 72.4 bits (176), Expect = 1e-09, Method: Composition-based stats.
Identities = 52/176 (29%), Positives = 82/176 (46%), Gaps = 24/176 (13%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVD--LEWLRDVPPDKAKEY 500
E++ AD ++A TI G+ N + RI R+ ++G D E+++ P+ +E
Sbjct: 100 ESLAAADQQELAETISSAGLYNQKSERIVALAERICEEYGGADGFDEFVKTGEPNVVRET 159
Query: 501 LLSFRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
LL G+G K+ +CV L + FPVDT+V RIA R+G P E ++
Sbjct: 160 LLDMNGVGPKTADCVLLFSGGRGGVFPVDTHVHRIARRMGLAPADADHEGVR-------- 211
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGEC 611
E+++ + C H MI FG+ +C+ KP C ACP+ C
Sbjct: 212 --EALEAAVPEEKCGFG-------HTAMIQFGREYCSARKPACLDDPEACPLADLC 258
>gi|159898923|ref|YP_001545170.1| DNA-(apurinic or apyrimidinic site) lyase [Herpetosiphon
aurantiacus DSM 785]
gi|159891962|gb|ABX05042.1| DNA-(apurinic or apyrimidinic site) lyase [Herpetosiphon
aurantiacus DSM 785]
Length = 222
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 82/173 (47%), Gaps = 17/173 (9%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYL 501
W AV A+ +++ TI+ G+ + A RI++ L ++ G L++LR++ +A+ +L
Sbjct: 61 WAAVLNAESSELEETIRVGGLAKIKAARIQNTLAVILEQRGEFSLDFLRELGLHEARAWL 120
Query: 502 LSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 561
+ G+G K+ CV + A VDT++ R+A R+G + + ++ L PV
Sbjct: 121 TALPGIGPKTAGCVLCFACNQPAMIVDTHIHRVAKRVGMIGPKVSADAAHDLLESAVPV- 179
Query: 562 ESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
DQ +Y+ H ++ G+ C +P C CP+ C +
Sbjct: 180 --------------DQ--MYQFHVSVLLHGRQICHAQRPACERCPLTEICDFY 216
>gi|297625112|ref|YP_003706546.1| HhH-GPD family protein [Truepera radiovictrix DSM 17093]
gi|297166292|gb|ADI16003.1| HhH-GPD family protein [Truepera radiovictrix DSM 17093]
Length = 241
Score = 72.0 bits (175), Expect = 2e-09, Method: Composition-based stats.
Identities = 49/173 (28%), Positives = 73/173 (42%), Gaps = 14/173 (8%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYL 501
W VR A V ++A I + A I+ + R++ DL +LRD+P D+A +L
Sbjct: 78 WVGVRDAPVAELAEAIAPSNYPEVKAPNIQKTVARVLERSPEADLSFLRDLPLDEALAWL 137
Query: 502 LSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 561
S G+GLK+ V L PVDT+V R++ R+G LL
Sbjct: 138 TSLPGVGLKTASLVLLFCFARPVLPVDTHVYRVSQRVG--------------LLSARVKT 183
Query: 562 ESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
+ L + LY H ++ G+ C P C+ CP+ CR F
Sbjct: 184 PTAAHAPLLALLPPEPAVLYNFHMALLVHGQRLCVWRAPRCSRCPLTARCRWF 236
>gi|229585498|ref|YP_002844000.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
M.16.27]
gi|228020548|gb|ACP55955.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
M.16.27]
Length = 233
Score = 72.0 bits (175), Expect = 2e-09, Method: Composition-based stats.
Identities = 54/212 (25%), Positives = 92/212 (43%), Gaps = 29/212 (13%)
Query: 411 QNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRI 470
QN D +L+ +E PE D A+++ I N +K G+ A R+
Sbjct: 46 QNSTDKSALKAYLELEKKVGVTPEKLSD---------ANLSDIENALKISGLYKTKAKRL 96
Query: 471 KDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTN 530
K ++ + + L P +E LL F G+G K+ + V L + FP+DT+
Sbjct: 97 KIISKIILEKYNGLIDNLLNSSNP---REELLKFEGIGEKTADVVLLTCRGYEVFPIDTH 153
Query: 531 VGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITF 590
+ R++ RLG VP+ E + L EL+ + L +LH+ +I
Sbjct: 154 ITRVSKRLGIVPMNAKYELISSTLKELFSAYD-----------------LLQLHHLLIAH 196
Query: 591 GKVFCTKSKPNCNACPMRGECRHFASAFASSR 622
G+ C KP CN+C ++ C +++ +R
Sbjct: 197 GRQTCKARKPLCNSCIIKECCEYYSHRDGEAR 228
>gi|357124677|ref|XP_003564024.1| PREDICTED: endonuclease III-like [Brachypodium distachyon]
Length = 277
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 60/113 (53%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYL 501
W+ V + + + I+ G+ A RI+ L + G++ LE+LR++ D+ K L
Sbjct: 109 WDQVVDEEGKGLEDAIRCGGLAATKAARIRAMLRDVRERRGAICLEYLRELSVDEVKREL 168
Query: 502 LSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHL 554
F+G+G K++ CV + L FPVDT+V RI +GWVP E +HL
Sbjct: 169 SQFKGIGPKTMACVLMFYLQKDDFPVDTHVLRITKAIGWVPSTATREKAYIHL 221
>gi|380494482|emb|CCF33119.1| base excision DNA repair protein [Colletotrichum higginsianum]
Length = 385
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 76/177 (42%), Gaps = 19/177 (10%)
Query: 439 SLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAK 498
S +WE + V+K+ IK G++ + + I LN++ +GS L+ L + + A
Sbjct: 211 SDEWERIVDGGVSKLQEAIKCGGLSQVKSKVIIGILNQVREKYGSYSLDHLFNASNEDAM 270
Query: 499 EYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY 558
+ L+SF+G+G K+ CV L L +F VDT+V RI +GW P + HL
Sbjct: 271 QELISFQGVGPKTASCVLLFCLQRESFAVDTHVWRITGLMGWRPRSASRDETHAHLDVRI 330
Query: 559 PVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVF--CTKSKPNCNACPMRGECRH 613
P Y LH ++ GKV C + C +R R
Sbjct: 331 P-----------------DEDKYGLHILLVKHGKVCAECKAGGKSVGKCELRKAFRQ 370
>gi|448572049|ref|ZP_21640138.1| endonuclease III [Haloferax lucentense DSM 14919]
gi|448596871|ref|ZP_21654009.1| endonuclease III [Haloferax alexandrinus JCM 10717]
gi|445721082|gb|ELZ72751.1| endonuclease III [Haloferax lucentense DSM 14919]
gi|445740752|gb|ELZ92257.1| endonuclease III [Haloferax alexandrinus JCM 10717]
Length = 268
Score = 71.6 bits (174), Expect = 2e-09, Method: Composition-based stats.
Identities = 54/176 (30%), Positives = 81/176 (46%), Gaps = 24/176 (13%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGS-VDLE-WLRDVPPDKAKEY 500
E++ AD I I+ G+ N + I+ ++ D GS D + ++R+ P ++
Sbjct: 90 ESLAAADREGIVEAIRSGGLYNQKSKLIRGVAEEVLADFGSEADFDRYVREEAPATVRDR 149
Query: 501 LLSFRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
LL +G+G K+ +CV L FPVDT+V RIA R+G P E ++ L P
Sbjct: 150 LLEMKGVGPKTADCVLLFAGGRGGVFPVDTHVHRIARRIGLAPADADHEGVRAALERDIP 209
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGEC 611
D++ + H MI FG+ FCT KP C +ACPM C
Sbjct: 210 ----------------DEKCGFG-HTAMIQFGREFCTARKPACLDGPDACPMADVC 248
>gi|284036648|ref|YP_003386578.1| HhH-GPD family protein [Spirosoma linguale DSM 74]
gi|283815941|gb|ADB37779.1| HhH-GPD family protein [Spirosoma linguale DSM 74]
Length = 241
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 74/176 (42%), Gaps = 15/176 (8%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYL 501
WE VR A + + + I+ + A I++ L L R+ G ++++L + + A +L
Sbjct: 65 WEQVRDAPLPDLIDAIRSANYPEIKAPYIQNLLTHLFRETGQANVDFLGQLSTEDAMAWL 124
Query: 502 LSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 561
G+G+K+ + L PVDT+V R+ RLG + + E LL P
Sbjct: 125 TKLPGIGMKTATILLLFKFQKPVLPVDTHVHRVTQRLGLIGPKVSAEKAHTILLSYLP-- 182
Query: 562 ESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASA 617
LD L+ H G+ CT P C+ C ++ C ++ S
Sbjct: 183 -------------LDALVLFNFHKHFYWHGQRVCTWYFPKCSECVLQTMCDYYQSG 225
>gi|433424488|ref|ZP_20406484.1| endonuclease III [Haloferax sp. BAB2207]
gi|432198075|gb|ELK54399.1| endonuclease III [Haloferax sp. BAB2207]
Length = 268
Score = 71.6 bits (174), Expect = 2e-09, Method: Composition-based stats.
Identities = 54/176 (30%), Positives = 81/176 (46%), Gaps = 24/176 (13%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGS-VDLE-WLRDVPPDKAKEY 500
E++ AD I I+ G+ N + I+ ++ D GS D + ++R+ P ++
Sbjct: 90 ESLAAADREGIVEAIRSGGLYNQKSKLIRGVAEEVLADFGSEADFDRYVREEAPATVRDR 149
Query: 501 LLSFRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
LL +G+G K+ +CV L FPVDT+V RIA R+G P E ++ L P
Sbjct: 150 LLEMKGVGPKTADCVLLFAGGRGGVFPVDTHVHRIARRIGLAPADADHEGVRAALEHDIP 209
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGEC 611
D++ + H MI FG+ FCT KP C +ACPM C
Sbjct: 210 ----------------DEKCGFG-HTAMIQFGREFCTARKPACLDGPDACPMADVC 248
>gi|344212676|ref|YP_004796996.1| endonuclease III [Haloarcula hispanica ATCC 33960]
gi|343784031|gb|AEM58008.1| endonuclease III [Haloarcula hispanica ATCC 33960]
Length = 277
Score = 71.6 bits (174), Expect = 2e-09, Method: Composition-based stats.
Identities = 54/183 (29%), Positives = 84/183 (45%), Gaps = 26/183 (14%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGS---VDLEWLRDVPPDKAKEYLLSFRGLG 508
++A TI G+ N + RI R+ ++G D E++RD P+K + LL G+G
Sbjct: 109 ELAETISSAGLYNQKSERIIALAQRICEEYGGEAGFD-EFVRDSDPEKVRSTLLDMNGVG 167
Query: 509 LKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 567
K+ +CV L FPVDT+V RIA R+G P E+++ E +++
Sbjct: 168 PKTADCVLLFAGGRGGVFPVDTHVHRIARRMGLAPPDADHETVR----------EYLERD 217
Query: 568 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGECRHFASAFASSRL 623
+ C H MI FG+ +C+ KP C +ACP+ G C A+ +
Sbjct: 218 VPGEKCGFG-------HTAMIQFGREYCSARKPACLDDPDACPLAGHCDQVGVYPAADEV 270
Query: 624 ALP 626
P
Sbjct: 271 TDP 273
>gi|302680965|ref|XP_003030164.1| hypothetical protein SCHCODRAFT_57851 [Schizophyllum commune H4-8]
gi|300103855|gb|EFI95261.1| hypothetical protein SCHCODRAFT_57851 [Schizophyllum commune H4-8]
Length = 317
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 78/171 (45%), Gaps = 26/171 (15%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPD-KAKE 499
++ A+ A + +A+ I+ G+ N A I+ L + HGS L+ L DV D +
Sbjct: 129 NFAAIADAPTSAVADAIRSGGLANKKAATIQRVLRDIKAKHGSYSLQHLADVCADAEVMR 188
Query: 500 YLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
L+++ G+G K+ CV L L +F VDT+V R++ LGWVP + Q HL P
Sbjct: 189 ELMAYDGVGPKTASCVLLFCLGRESFAVDTHVFRLSKLLGWVPPKADRVQTQAHLDLRIP 248
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGE 610
D++ Y LH MI G++ C C +G+
Sbjct: 249 G---------------DRK--YGLHVLMIDHGRI--------CTGCKTKGK 274
>gi|385810254|ref|YP_005846650.1| endonuclease III [Ignavibacterium album JCM 16511]
gi|383802302|gb|AFH49382.1| Putative endonuclease III [Ignavibacterium album JCM 16511]
Length = 236
Score = 71.2 bits (173), Expect = 2e-09, Method: Composition-based stats.
Identities = 48/182 (26%), Positives = 77/182 (42%), Gaps = 18/182 (9%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYL 501
WE V ++I IK G+ A IK+ L L + HG + L L+ D+ + L
Sbjct: 60 WEDVLSLKTSQIERIIKVAGLGKQKAKAIKNLLKNLKKYHGKLSLTHLKKKSDDEVLDEL 119
Query: 502 LSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 561
+ +G+G+K+ CV L PVDT+V RI R+G V PE
Sbjct: 120 ILHKGIGVKTASCVLLFAFDRNVCPVDTHVHRILNRVGVVETSN-PEK----------TF 168
Query: 562 ESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASS 621
I+ + + + + H ++ G+ +CT + P C CP+ C + F
Sbjct: 169 NEIKSH-------IPKGAAHSFHTNLLRLGREYCTPTNPKCYECPIENVCNYKEKNFTIK 221
Query: 622 RL 623
+L
Sbjct: 222 KL 223
>gi|436837874|ref|YP_007323090.1| HhH-GPD family protein [Fibrella aestuarina BUZ 2]
gi|384069287|emb|CCH02497.1| HhH-GPD family protein [Fibrella aestuarina BUZ 2]
Length = 236
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 81/176 (46%), Gaps = 15/176 (8%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYL 501
WEAVR A + + + I+ + A I++ L L+ + G+ ++++LR++ ++A ++L
Sbjct: 61 WEAVRDAPLPDLIDAIQTANYPEIKAPYIQNVLRVLIAERGTANIDFLRELSTEEAMQWL 120
Query: 502 LSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 561
+ G+G K+ + L PVDT+V R+ R+G + P + + H L L
Sbjct: 121 TNLPGIGPKTATLLLLFAFQKPVLPVDTHVHRVTQRIG--AIGPKVSAAKAHDLLL---- 174
Query: 562 ESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASA 617
YL D L+ H G+ CT P C AC + +C + S
Sbjct: 175 ----SYL-----PADAPVLFNFHKHFYWHGQRVCTWYNPRCEACVLAPDCDYLQSG 221
>gi|449541266|gb|EMD32251.1| hypothetical protein CERSUDRAFT_22472, partial [Ceriporiopsis
subvermispora B]
Length = 275
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 82/185 (44%), Gaps = 34/185 (18%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAK-- 498
D+ A+ A +++ I+ G+ N AG I+ L + HGS L+ L V +AK
Sbjct: 83 DFAAIAEAPKSEVVEAIRMGGLANKKAGVIQQVLKEVRERHGSYSLQHLAGVVEKEAKGK 142
Query: 499 --------------EYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQ 544
+ L+S+ G+G K+ CV L L +FPVDT+V R++ LGWVP +
Sbjct: 143 AKSSGTPVSDEEAMQELVSYDGVGPKTASCVLLFCLGRASFPVDTHVFRLSKLLGWVPAK 202
Query: 545 PLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFG-KVFCTKSKPNCN 603
+ Q HL K+ Q Y LH MI G + K+ +
Sbjct: 203 ADRVTAQAHL-----------------DLKIPQDLKYGLHVLMIAHGRRCKGCKTSGSRT 245
Query: 604 ACPMR 608
+CP++
Sbjct: 246 SCPLK 250
>gi|71003520|ref|XP_756426.1| hypothetical protein UM00279.1 [Ustilago maydis 521]
gi|46096031|gb|EAK81264.1| hypothetical protein UM00279.1 [Ustilago maydis 521]
Length = 1875
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 73/164 (44%), Gaps = 22/164 (13%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
+W A+ A +++ I+ G+ N A IK LN+ ++ HG + L+ L D D+ +
Sbjct: 1435 NWHAIHAAPESELVEAIRCGGLANNKARTIKGILNQTLQRHGKLSLDHLHDATDDEIMQE 1494
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
L+SF G+G K CV + + VDT+V R+ L WVP + + HL E P
Sbjct: 1495 LVSFNGVGPKVASCVLAFCIGRQSMAVDTHVFRLCKALAWVPEKANRDQTYYHLHERVP- 1553
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNA 604
Y LH +I GK+ C NC+A
Sbjct: 1554 ----------------GPLKYALHVLLIKHGKM-CA----NCSA 1576
>gi|297527052|ref|YP_003669076.1| DNA-(apurinic or apyrimidinic site) lyase [Staphylothermus
hellenicus DSM 12710]
gi|297255968|gb|ADI32177.1| DNA-(apurinic or apyrimidinic site) lyase [Staphylothermus
hellenicus DSM 12710]
Length = 234
Score = 70.5 bits (171), Expect = 4e-09, Method: Composition-based stats.
Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 19/166 (11%)
Query: 450 VNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDL-EWLRDVPPDKAKEYLLSFRGLG 508
++K+ +K GM N A RI + + +L + + + +A++YL+S G+G
Sbjct: 76 IDKLIEALKPAGMYNQRAQRIIELAKIFTEKNVEEELGKLIEEGKLREARKYLVSLPGVG 135
Query: 509 LKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYL 568
LK+ + V L+ FPVDT++ R+ RLG++ E+I +
Sbjct: 136 LKTADVVLLMYYGQPVFPVDTHIRRVTKRLGYIGKDD---------------YEAISSW- 179
Query: 569 WPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
W + +L E H +IT G+ C KP CN CP+R C+++
Sbjct: 180 WMK--QLKPNDYLETHLLLITHGRKTCKARKPLCNICPIRKYCKYY 223
>gi|443896168|dbj|GAC73512.1| nitrogen permease regulator NLRG/NPR2, partial [Pseudozyma
antarctica T-34]
Length = 979
Score = 70.1 bits (170), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 71/169 (42%), Gaps = 25/169 (14%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
+WEA+ A +++ I+ G+ N A IK L++ + HG + L+ L D+ +
Sbjct: 534 NWEAIHAAPESELVEAIRCGGLANNKARTIKGILSQTMEKHGKLSLDHLHTATDDEIMQE 593
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
L+SF G+G K CV + + VDT+V R+ LGWVP + + HL E P
Sbjct: 594 LVSFNGVGPKVASCVLAFCIGRQSMAVDTHVFRLCKSLGWVPEKANRDQTYYHLHERVP- 652
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRG 609
Y LH +I GK C C +G
Sbjct: 653 ----------------GHLKYPLHVLLIQHGK--------RCANCSAKG 677
>gi|159900799|ref|YP_001547046.1| HhH-GPD family protein [Herpetosiphon aurantiacus DSM 785]
gi|159893838|gb|ABX06918.1| HhH-GPD family protein [Herpetosiphon aurantiacus DSM 785]
Length = 224
Score = 70.1 bits (170), Expect = 6e-09, Method: Composition-based stats.
Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 16/170 (9%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYL 501
WEA+ A V +A IK A I+ L +++ + G + +++L ++ + A +L
Sbjct: 62 WEAILAAPVEAVAEAIKPANYAPAKANNIQAALAKILAERGEISIDFLAELSTEAAMAWL 121
Query: 502 LSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 561
RG+G K+ V L PVDT+V R++ RLG V + E+ ++
Sbjct: 122 TGLRGVGPKTASLVLLFCFSKPILPVDTHVHRVSQRLGLVKAKTPTEAHEI--------- 172
Query: 562 ESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
LW +L D L+ H ++ G+ C +P CN CP+ +C
Sbjct: 173 ------LW-QLLPHDAEWLFNYHVALLRHGQRICLAKRPRCNQCPLTAQC 215
>gi|307111853|gb|EFN60087.1| hypothetical protein CHLNCDRAFT_14787, partial [Chlorella
variabilis]
Length = 56
Score = 69.7 bits (169), Expect = 8e-09, Method: Composition-based stats.
Identities = 33/58 (56%), Positives = 39/58 (67%), Gaps = 2/58 (3%)
Query: 484 VDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWV 541
+ LEWLRD P + A+ YL++ GLG KSV C+ LL L FPVDTNVGRI R WV
Sbjct: 1 LSLEWLRDAPDEVARNYLMNINGLGRKSVGCIMLLCLGKKEFPVDTNVGRICAR--WV 56
>gi|147845261|emb|CAN79062.1| hypothetical protein VITISV_036428 [Vitis vinifera]
Length = 449
Score = 69.7 bits (169), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 51/66 (77%)
Query: 528 DTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQM 587
DTN+GRI +LG VP QPL E LQL+LLEL +LE IQKYL RLCKLD TLYE YQ+
Sbjct: 343 DTNIGRIXEKLGXVPFQPLLEPLQLYLLELCHMLEFIQKYLLLRLCKLDXXTLYEQCYQL 402
Query: 588 ITFGKV 593
ITFGK+
Sbjct: 403 ITFGKI 408
>gi|15805952|ref|NP_294652.1| endonuclease III [Deinococcus radiodurans R1]
gi|6458651|gb|AAF10505.1|AE001945_9 endonuclease III, putative [Deinococcus radiodurans R1]
Length = 338
Score = 69.3 bits (168), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 74/177 (41%), Gaps = 22/177 (12%)
Query: 442 WEAVRCADVNKIANTIKERG--MNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPP----- 494
WEA + I T+K G ++ M A I L L HG + L +LR+ P
Sbjct: 156 WEAALLDGPDGIEATLKSAGGGLSRMKADYIYGILAHLQEHHGGLSLRFLREFPHTPEGH 215
Query: 495 DKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHL 554
++A++ L + G+G K+V V L L A PVD N+ R A RL VP ++
Sbjct: 216 EQARQALAALPGVGHKTVALVLLFDLRRPAMPVDGNMERAAKRLELVPAAWNSHKVERWY 275
Query: 555 LELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
E+ P D T + LH + G+ C P C CP+R C
Sbjct: 276 AEVMPA---------------DWETRFALHISGVRHGRDTCRSKHPLCPQCPLREFC 317
>gi|402075883|gb|EJT71306.1| hypothetical protein GGTG_10565 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 393
Score = 69.3 bits (168), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 89/230 (38%), Gaps = 59/230 (25%)
Query: 411 QNDFDWDSLR--RQVEAN-GGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLA 467
QN D +S R R ++A GG+ + +W AV ++ + I+ G+ +
Sbjct: 183 QNTTDANSARAKRAMDAAYGGRHD---------NWAAVAAGGTARLEDAIRCGGLAAAKS 233
Query: 468 GRIKDFLNRLVRDHGS--------------------------VDLEWLRDVPPDKAKEYL 501
I L RL H S LE +RD+P A L
Sbjct: 234 RVIISILERLRERHASSSSLSSLSSSPAVAKDDDEKNQNDSIYSLEHIRDLPTADAMREL 293
Query: 502 LSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 561
LSFRG+G K+ CV L L +F VDT+V RIA LGW P + + LHL P
Sbjct: 294 LSFRGVGPKTASCVLLFCLGRDSFAVDTHVHRIAGLLGWRPPRATRDETHLHLDARVPDT 353
Query: 562 ESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
+ Y LH M+T GK C + K A G C
Sbjct: 354 DK-----------------YGLHVLMVTHGK-RCAECKAGGRAA---GRC 382
>gi|448561313|ref|ZP_21634665.1| endonuclease III [Haloferax prahovense DSM 18310]
gi|445721545|gb|ELZ73213.1| endonuclease III [Haloferax prahovense DSM 18310]
Length = 268
Score = 69.3 bits (168), Expect = 1e-08, Method: Composition-based stats.
Identities = 54/176 (30%), Positives = 80/176 (45%), Gaps = 24/176 (13%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGS-VDLE-WLRDVPPDKAKEY 500
E++ AD I I+ G+ N + I+ ++ D GS D + ++R+ P ++
Sbjct: 90 ESLAAADREGIVEAIRSGGLYNQKSKLIQGVAEDVLADFGSEADFDRYVREEVPATVRDR 149
Query: 501 LLSFRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
LL +G+G K+ +CV L FPVDT+V RIA R+G P E ++ L P
Sbjct: 150 LLEMKGVGPKTADCVLLFAGGRGGVFPVDTHVHRIARRIGLAPADADHEGVRAALERDIP 209
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGEC 611
D++ + H MI FG+ FCT KP C ACPM C
Sbjct: 210 ----------------DEKCGFG-HTAMIQFGREFCTARKPACLDGPEACPMADVC 248
>gi|448590303|ref|ZP_21650179.1| endonuclease III [Haloferax elongans ATCC BAA-1513]
gi|445734936|gb|ELZ86491.1| endonuclease III [Haloferax elongans ATCC BAA-1513]
Length = 267
Score = 69.3 bits (168), Expect = 1e-08, Method: Composition-based stats.
Identities = 51/176 (28%), Positives = 80/176 (45%), Gaps = 24/176 (13%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGS-VDLE-WLRDVPPDKAKEY 500
E++ AD + I+ G+ N + I ++ D GS D + ++R+ P+ +E
Sbjct: 89 ESLAAADREALVEAIRSAGLYNQKSKLIIGVAEAVLADFGSEADFDTYIREADPETVRER 148
Query: 501 LLSFRGLGLKSVECVRLLT-LHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
LL +G+G K+ +CV L FPVDT+V RI+ R+G P E ++
Sbjct: 149 LLEMKGVGPKTADCVLLFAGGRDGVFPVDTHVHRISRRIGLAPADADHEGVR-------- 200
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGEC 611
E +++ + C H MI FG+ +CT KP C ACPM C
Sbjct: 201 --ERLERDVPGEACGFG-------HTAMIQFGREYCTARKPACLDGPEACPMADVC 247
>gi|389846321|ref|YP_006348560.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Haloferax mediterranei ATCC 33500]
gi|448616059|ref|ZP_21664769.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Haloferax mediterranei ATCC 33500]
gi|388243627|gb|AFK18573.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Haloferax mediterranei ATCC 33500]
gi|445750714|gb|EMA02151.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Haloferax mediterranei ATCC 33500]
Length = 268
Score = 69.3 bits (168), Expect = 1e-08, Method: Composition-based stats.
Identities = 55/192 (28%), Positives = 80/192 (41%), Gaps = 24/192 (12%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDL--EWLRDVPPDKAKEY 500
E++ AD I + I+ G+ N + I+ ++ D GS D ++R+ P ++
Sbjct: 90 ESLAAADREGIIDAIRSGGLYNQKSKLIQGVAEEVLADFGSEDDFDRYVREADPSTVRDR 149
Query: 501 LLSFRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
LL +G+G K+ +CV L FPVDT+V RIA RLG P E ++ L P
Sbjct: 150 LLEMKGVGPKTADCVLLFAGGRGGVFPVDTHVHRIARRLGVAPADADHEGVRAALEREVP 209
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGECRHFA 615
+ C H MI FG+ FC KP C + CPM C
Sbjct: 210 AEK----------CGFG-------HTAMIQFGREFCKARKPVCLDGKDECPMADVCEKVG 252
Query: 616 SAFASSRLALPG 627
A + P
Sbjct: 253 VDVAGQSVVDPA 264
>gi|226357357|ref|YP_002787097.1| DNA-(apurinic or apyrimidinic site) lyase [Deinococcus deserti
VCD115]
gi|226319347|gb|ACO47343.1| putative DNA-(apurinic or apyrimidinic site) lyase (endonuclease
III) [Deinococcus deserti VCD115]
Length = 247
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 81/176 (46%), Gaps = 18/176 (10%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDH-GSVDLEWLRDVPPDKAKE 499
DW+A+ A +A+ I+ A RI+ L R +RD G +L++LR++P A +
Sbjct: 72 DWDAIIAAPTEAVAHAIRRSNYPESKAPRIQATL-RAIRDAPGGYNLDFLRELPVKDALK 130
Query: 500 YLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
+L G+G+K+ V L FPVDT+V R+ R+G +P
Sbjct: 131 WLTDLPGVGIKTASLVLLFNYARPVFPVDTHVHRVNTRVGTIPR---------------- 174
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFA 615
+ E L D LYELH ++ G+ CT S+P C C +R C FA
Sbjct: 175 MGEQAAHRALLGLLPPDPPLLYELHINLLKHGQKVCTWSRPRCLQCVLRERCDAFA 230
>gi|448625246|ref|ZP_21671013.1| endonuclease III [Haloferax denitrificans ATCC 35960]
gi|445749008|gb|EMA00454.1| endonuclease III [Haloferax denitrificans ATCC 35960]
Length = 258
Score = 68.9 bits (167), Expect = 1e-08, Method: Composition-based stats.
Identities = 53/176 (30%), Positives = 80/176 (45%), Gaps = 24/176 (13%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGS-VDLE-WLRDVPPDKAKEY 500
E++ AD I + I+ G+ N + I+ ++ D GS D + ++R+ P ++
Sbjct: 90 ESLAAADREGIVDAIRSGGLYNQKSKLIQGVAEEVLADFGSEADFDRYVREEAPATVRDR 149
Query: 501 LLSFRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
LL +G+G K+ +CV L FPVDT+V RIA R+G P E ++ L P
Sbjct: 150 LLEMKGVGPKTADCVLLFAGGRGGVFPVDTHVHRIARRIGLAPADADHEGVRAALERDIP 209
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGEC 611
D++ + H MI FG+ FC KP C ACPM C
Sbjct: 210 ----------------DEKCGFG-HTAMIQFGREFCKARKPACLDGPEACPMADVC 248
>gi|380484040|emb|CCF40248.1| base excision DNA repair protein [Colletotrichum higginsianum]
Length = 361
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 75/174 (43%), Gaps = 25/174 (14%)
Query: 439 SLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAK 498
+ ++EA+ ++K+ + ++ GM N A + L+ + HG DL+ L + ++A
Sbjct: 187 TFNYEAIVEGGMDKLVDALRPGGMQNRKAKILMRLLHDVKERHGKWDLQHLFNASDEEAV 246
Query: 499 EYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY 558
+ ++S+ GLG K C+ + L AF VDT++ RI GW P E Q HL
Sbjct: 247 KEVVSYWGLGPKCAFCLLSICLKRDAFAVDTHIYRITGLWGWRPKDASKELAQAHLDARI 306
Query: 559 PVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
P Y LHYQ I G+ C AC G+ +
Sbjct: 307 P-----------------NEIKYALHYQFIVHGR--------QCPACRGNGDSK 335
>gi|323507809|emb|CBQ67680.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 638
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 70/169 (41%), Gaps = 25/169 (14%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
+W A+ A +++ + I+ G+ N A IK L + + HG + L+ L D D +
Sbjct: 200 NWAAIHAAPESELVDAIRCGGLANNKARTIKGILAQTLEKHGKLSLDHLHDASDDDIMQQ 259
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
L++F G+G K CV + + VDT+V R+ LGWVP + + HL E P
Sbjct: 260 LVAFNGVGPKVASCVLAFCIGRDSMAVDTHVFRLCKALGWVPDKANRDQTYYHLHERVP- 318
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRG 609
Y LH +I GK C C +G
Sbjct: 319 ----------------GHLKYALHVLLIAHGK--------RCANCSAKG 343
>gi|448542485|ref|ZP_21624719.1| endonuclease III [Haloferax sp. ATCC BAA-646]
gi|448549955|ref|ZP_21628560.1| endonuclease III [Haloferax sp. ATCC BAA-645]
gi|445707085|gb|ELZ58948.1| endonuclease III [Haloferax sp. ATCC BAA-646]
gi|445713003|gb|ELZ64784.1| endonuclease III [Haloferax sp. ATCC BAA-645]
Length = 270
Score = 68.9 bits (167), Expect = 1e-08, Method: Composition-based stats.
Identities = 53/176 (30%), Positives = 81/176 (46%), Gaps = 24/176 (13%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGS-VDLE-WLRDVPPDKAKEY 500
E++ AD I I+ G+ N + I+ ++ D GS D + ++R+ P ++
Sbjct: 90 ESLAAADREGIIEAIRSGGLYNQKSKLIQGVAEEVLADFGSEADFDRYVREEAPATVRDR 149
Query: 501 LLSFRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
LL +G+G K+ +CV L FPVDT+V RIA R+G P E ++ L P
Sbjct: 150 LLEMKGVGPKTADCVLLFAGGRGGVFPVDTHVHRIARRMGLAPADADHEGVRAALERDIP 209
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGEC 611
D++ + H MI FG+ FCT KP C +ACP+ C
Sbjct: 210 ----------------DEKCGFG-HTAMIQFGREFCTARKPACLDGPDACPLYDLC 248
>gi|403252796|ref|ZP_10919102.1| repair endonuclease [Thermotoga sp. EMP]
gi|402811884|gb|EJX26367.1| repair endonuclease [Thermotoga sp. EMP]
Length = 232
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 77/164 (46%), Gaps = 19/164 (11%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
K+A I+ G N+ R+K+ L L + DL LRD+P +E L +G+G ++
Sbjct: 82 KMAELIRPAGFFNIKTKRLKELLKFL--KEYNYDLSRLRDLPTHILRERFLKIKGIGKET 139
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
+ + L L F VD+ R+ R+ + L E +L + YP E +Q Y
Sbjct: 140 ADAILLYALEKPIFVVDSYTRRLLKRIFNIELNDYDEVQRLFMTH-YP--EDVQLY---- 192
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFA 615
E H ++ K FC+K+ P C+ACP+R EC H +
Sbjct: 193 ---------QEFHGLIVEHAKKFCSKT-PKCDACPLRKECYHVS 226
>gi|126466261|ref|YP_001041370.1| HhH-GPD family protein [Staphylothermus marinus F1]
gi|126015084|gb|ABN70462.1| HhH-GPD family protein [Staphylothermus marinus F1]
Length = 228
Score = 68.9 bits (167), Expect = 1e-08, Method: Composition-based stats.
Identities = 50/180 (27%), Positives = 84/180 (46%), Gaps = 33/180 (18%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRI----KDFLNRLVRDHGSVDLEWLRDVPPD--- 495
E + + K+ +K GM N A RI K F R V+ E LR + +
Sbjct: 69 EKILSTSIEKLVEALKPAGMYNQRAQRIVELAKIFTERNVK-------EELRKLVEEGKL 121
Query: 496 -KAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHL 554
+A++YL++ G+GLK+ + V L+ FPVDT++ R++ RLG++
Sbjct: 122 REARKYLVNLPGVGLKTADVVLLMYYKQPVFPVDTHIRRVSKRLGYIEKDN--------- 172
Query: 555 LELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
E+I ++ W + +L E H +IT G+ C KP C+ CP+ C+++
Sbjct: 173 ------YETISRW-WMK--QLKPNEYLEAHLLLITHGRKTCKARKPLCDKCPINKYCKYY 223
>gi|94986389|ref|YP_605753.1| HhH-GPD [Deinococcus geothermalis DSM 11300]
gi|94556670|gb|ABF46584.1| HhH-GPD [Deinococcus geothermalis DSM 11300]
Length = 242
Score = 68.6 bits (166), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/171 (27%), Positives = 76/171 (44%), Gaps = 16/171 (9%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
DW+A+ A +A+ I+ A RI+ L + + GS DL++L ++P A ++
Sbjct: 72 DWDAIIAAPTEAVAHAIRRSNYPESKAPRIQATLRAIRDERGSYDLDFLAELPVKDALKW 131
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
L + G+G+K+ V L FPVDT+V R+ R+G +
Sbjct: 132 LTALPGVGIKTASLVLLFNYARPVFPVDTHVHRVTTRVGVIGRMG--------------- 176
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
E +L D L+ELH ++ G+ CT +P C C +R C
Sbjct: 177 -EQAAHRALLQLLPPDPPFLFELHLNLLRHGQKVCTWVRPKCPVCVLRARC 226
>gi|365174645|ref|ZP_09362085.1| hypothetical protein HMPREF1006_00030 [Synergistes sp. 3_1_syn1]
gi|363614442|gb|EHL65936.1| hypothetical protein HMPREF1006_00030 [Synergistes sp. 3_1_syn1]
Length = 231
Score = 68.6 bits (166), Expect = 2e-08, Method: Composition-based stats.
Identities = 44/170 (25%), Positives = 70/170 (41%), Gaps = 17/170 (10%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYL 501
WE V AD+ ++ ++ GM++ RI+ L + G L+ LR + +EYL
Sbjct: 65 WEEVAHADLEELKEVLRIAGMSSTKPPRIQQILAAVKEKFGGYTLKELRGWKQPEVREYL 124
Query: 502 LSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 561
S G+G K+ V L FPVDT++ R++ R GW + P+ +Q L P
Sbjct: 125 TSLPGVGPKTSAIVECFDLGMPGFPVDTHITRLSKRFGWADEKSPPDKIQARLEAALP-- 182
Query: 562 ESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
H + G+ C+ KP+C C + C
Sbjct: 183 ---------------PERFRGGHLNFLDHGRSICSARKPDCARCALAKWC 217
>gi|400601349|gb|EJP68992.1| base excision DNA repair protein [Beauveria bassiana ARSEF 2860]
Length = 361
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 82/210 (39%), Gaps = 30/210 (14%)
Query: 417 DSLRRQVEANGGKKERPEHTKDSLD--------WEAVRCADVNKIANTIKERGMNNMLAG 468
D+L R + + K S+D WEA+ K+ I+ G+ +
Sbjct: 173 DALVRTILSQNTSSANSTRAKQSMDTVYGGSDQWEAIAAGGQAKLQRAIQSGGLAATKSR 232
Query: 469 RIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVD 528
I D L + +G L+ L +A E LL+F G+G K+ C+ L L +F VD
Sbjct: 233 VIIDILAAVRAKYGVYSLDHLFTAGDAEAMEELLAFPGVGPKTASCILLFCLQRPSFAVD 292
Query: 529 TNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMI 588
T+V R+ LGW P + E Q HL K+ Y LH +I
Sbjct: 293 THVYRLTGVLGWRPYEATREQAQAHL-----------------DAKVPDELKYPLHVLLI 335
Query: 589 TFGKVFCTKSKPNCNACPMRGECRHFASAF 618
G+ C+ CNA G+ AF
Sbjct: 336 AHGRT-CS----ACNAKAAAGQTCKLREAF 360
>gi|76802666|ref|YP_330761.1| repair DNA N-glycosylase / DNA-(apurinic or apyrimidinic site)
lyase [Natronomonas pharaonis DSM 2160]
gi|76558531|emb|CAI50123.1| endonuclease III [Natronomonas pharaonis DSM 2160]
Length = 268
Score = 68.2 bits (165), Expect = 2e-08, Method: Composition-based stats.
Identities = 51/166 (30%), Positives = 74/166 (44%), Gaps = 24/166 (14%)
Query: 453 IANTIKERGMNNMLAGRIKDFLNRLVRDHGSVD--LEWLRDVPPDKAKEYLLSFRGLGLK 510
+A TI G+ N + R+ +V +G D ++ + PPD+ +E LL G+G K
Sbjct: 98 LAETISGAGLYNQKSTRLIALAEFVVETYGGADGFDGFVTEAPPDEVRETLLELNGVGPK 157
Query: 511 SVECVRLLT-LHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 569
+ +CV L + FPVDT+V RIA R+G P E+++ L P
Sbjct: 158 TADCVLLFSGGRDGVFPVDTHVHRIARRMGLAPADADHEAVRSALEADVP---------- 207
Query: 570 PRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGEC 611
C H MI FG+ +CT KP C ACP+ C
Sbjct: 208 GEKCGFG-------HTAMIQFGREYCTARKPACLDDPEACPLADRC 246
>gi|269837103|ref|YP_003319331.1| DNA-(apurinic or apyrimidinic site) lyase [Sphaerobacter
thermophilus DSM 20745]
gi|269786366|gb|ACZ38509.1| DNA-(apurinic or apyrimidinic site) lyase [Sphaerobacter
thermophilus DSM 20745]
Length = 247
Score = 68.2 bits (165), Expect = 2e-08, Method: Composition-based stats.
Identities = 51/181 (28%), Positives = 83/181 (45%), Gaps = 17/181 (9%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYL 501
W+ V A V ++A+ I+ G+ A RI+ L + L L +P +AK L
Sbjct: 77 WDEVVAAPVEEVADAIRSGGLARQKAPRIQAALAAALNSGEDPPLASLFTLPLPEAKRRL 136
Query: 502 LSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 561
S G+G K+ CV L A PVDT+V R++ R+G + Q + E+ LE P+L
Sbjct: 137 TSLPGIGPKTAACVLLFACGRPALPVDTHVYRVSRRVGLID-QGVSEAAAHDRLE--PLL 193
Query: 562 ESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASS 621
+ + +Y H +I G+ C ++P C+ C + C ++ + SS
Sbjct: 194 KPDE--------------VYPFHVGLIRHGRRVCKATRPRCDECCISDLCDYYQAGCQSS 239
Query: 622 R 622
R
Sbjct: 240 R 240
>gi|292655041|ref|YP_003534938.1| endonuclease III [Haloferax volcanii DS2]
gi|448292657|ref|ZP_21483063.1| endonuclease III [Haloferax volcanii DS2]
gi|291372380|gb|ADE04607.1| endonuclease III [Haloferax volcanii DS2]
gi|445572413|gb|ELY26953.1| endonuclease III [Haloferax volcanii DS2]
Length = 268
Score = 68.2 bits (165), Expect = 2e-08, Method: Composition-based stats.
Identities = 53/176 (30%), Positives = 79/176 (44%), Gaps = 24/176 (13%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGS-VDLE-WLRDVPPDKAKEY 500
E++ AD I I+ G+ N + I+ ++ D GS D + ++R+ P ++
Sbjct: 90 ESLAAADREGIVEAIRSGGLYNQKSKLIQGVAEEVLADFGSEADFDRYVREEAPATVRDR 149
Query: 501 LLSFRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
LL +G+G K+ +CV L FPVDT+V RIA R+G P E ++ L P
Sbjct: 150 LLEMKGVGPKTADCVLLFAGGRGGVFPVDTHVHRIARRIGLAPADADHEGVRAALERDIP 209
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGEC 611
D++ + H MI FG+ FC KP C ACPM C
Sbjct: 210 ----------------DEKCGFG-HTAMIQFGREFCKARKPACLDGPEACPMTDVC 248
>gi|162447100|ref|YP_001620232.1| endonuclease III [Acholeplasma laidlawii PG-8A]
gi|161985207|gb|ABX80856.1| endonuclease III [Acholeplasma laidlawii PG-8A]
Length = 214
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
ADV+ + +TIK G+ + I RLV D+ + VP ++ L S G+
Sbjct: 67 ADVDDVMDTIKTIGLYKTKSKNIIGLAKRLVEDYDGL-------VPSERKD--LESLPGV 117
Query: 508 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 567
G K+ V A VDT++ RI+ RLG +++ L + +P K
Sbjct: 118 GRKTANVVLSNAFGIPALAVDTHILRISKRLGLADETDDVLEVEMKLNKQFP------KE 171
Query: 568 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFA 619
LW ++LH+Q+I FG+ C KPNC+ C M+ C HF + +
Sbjct: 172 LW-----------HKLHHQLIFFGRYHCIARKPNCDTCKMQDMCPHFKNVIS 212
>gi|448582052|ref|ZP_21645556.1| endonuclease III [Haloferax gibbonsii ATCC 33959]
gi|445731700|gb|ELZ83283.1| endonuclease III [Haloferax gibbonsii ATCC 33959]
Length = 268
Score = 68.2 bits (165), Expect = 2e-08, Method: Composition-based stats.
Identities = 54/177 (30%), Positives = 79/177 (44%), Gaps = 26/177 (14%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGS---VDLEWLRDVPPDKAKE 499
E++ AD I I+ G+ N + I+ ++ D GS D ++R+ P ++
Sbjct: 90 ESLAAADREGIVEAIRSGGLYNQKSKLIQGVAEDVLADFGSEAGFD-RYVREEDPSTVRD 148
Query: 500 YLLSFRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY 558
LL +G+G K+ +CV L FPVDT+V RIA R+G P E ++ L
Sbjct: 149 RLLEMKGVGPKTADCVLLFAGGRGGVFPVDTHVHRIARRIGLAPADADHEGVRAALERDI 208
Query: 559 PVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGEC 611
P D++ + H MI FG+ FCT KP C ACPM C
Sbjct: 209 P----------------DEKCGFG-HTAMIQFGREFCTARKPACLDGPEACPMADVC 248
>gi|239906402|ref|YP_002953143.1| DNA glycosylase [Desulfovibrio magneticus RS-1]
gi|239796268|dbj|BAH75257.1| putative DNA glycosylase [Desulfovibrio magneticus RS-1]
Length = 216
Score = 67.8 bits (164), Expect = 3e-08, Method: Composition-based stats.
Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 16/168 (9%)
Query: 440 LDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKE 499
LD + A + +A I+ G + AGR+K+ + +V + G DL L D+A++
Sbjct: 60 LDPHVLHAASLEAVAERIRPAGHFRVKAGRLKNLMALIVEELGG-DLTALAGYDLDQARD 118
Query: 500 YLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
LLS +G+G ++ + + L L+ AF VD RI R G P + + L+ ++ P
Sbjct: 119 KLLSVKGVGPETADSILLYGLNLPAFVVDAYTARICFRHGLAPEEAGYDELRELFMDALP 178
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPM 607
D R E H ++ G +C P C ACP+
Sbjct: 179 E---------------DVRLYNEFHALLVRVGNAWCRPRAPKCAACPL 211
>gi|433638876|ref|YP_007284636.1| putative endoIII-related endonuclease [Halovivax ruber XH-70]
gi|433290680|gb|AGB16503.1| putative endoIII-related endonuclease [Halovivax ruber XH-70]
Length = 296
Score = 67.8 bits (164), Expect = 3e-08, Method: Composition-based stats.
Identities = 56/198 (28%), Positives = 90/198 (45%), Gaps = 25/198 (12%)
Query: 422 QVEANGGKKERPEHTKDSLDWEAVRC-ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRD 480
+ + NG + T+ + D A AD +IA TI G+ N + I++ + +
Sbjct: 97 EADENGHEGATDGETESTSDLAATLADADREEIAETISAAGLYNQKSRMIQEAAEWVRTE 156
Query: 481 HGSVDL--EWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLT-LHHLAFPVDTNVGRIAVR 537
G+ ++R+ P ++ LLS G+G K+ +CV L +PVDT+V RI+ R
Sbjct: 157 FGTAPAFDAYVRETAPATVRDELLSVHGVGPKTADCVLLFAGGQDGVYPVDTHVHRISRR 216
Query: 538 LGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTK 597
LG P + E ++ E+++ + C H MI FG+ +CT
Sbjct: 217 LGIAPPEAGHEGVR----------EALETTVPGPKCGFG-------HTAMIQFGREYCTA 259
Query: 598 SKPNC----NACPMRGEC 611
KP C ACP+ GEC
Sbjct: 260 RKPACLDGTEACPLAGEC 277
>gi|70607241|ref|YP_256111.1| endonuclease III [Sulfolobus acidocaldarius DSM 639]
gi|68567889|gb|AAY80818.1| endonuclease III [Sulfolobus acidocaldarius DSM 639]
Length = 223
Score = 67.8 bits (164), Expect = 3e-08, Method: Composition-based stats.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 23/172 (13%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
+ ++ AD+N I + I+ G+ N A IK+ + DL+ ++ K +++L
Sbjct: 69 DRIKHADINTIIDAIRVAGLGNSKARYIKNVAEVIN------DLDLNIEIDCQKLRDFLT 122
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
+ G+G K+ + V L FP+DT++ R+ RLG+ L P +
Sbjct: 123 AIEGIGDKTADVVLLTCFRCREFPIDTHIRRVISRLGF--------------LGSSPKYK 168
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
I +Y R D L LH+ +I G+ C KP C+ C +R C+++
Sbjct: 169 DISEYFKTRFSSED---LLNLHHLLIAHGRKTCKSRKPICDKCVIRDYCKYY 217
>gi|449067484|ref|YP_007434566.1| endonuclease III [Sulfolobus acidocaldarius N8]
gi|449069758|ref|YP_007436839.1| endonuclease III [Sulfolobus acidocaldarius Ron12/I]
gi|449035992|gb|AGE71418.1| endonuclease III [Sulfolobus acidocaldarius N8]
gi|449038266|gb|AGE73691.1| endonuclease III [Sulfolobus acidocaldarius Ron12/I]
Length = 225
Score = 67.4 bits (163), Expect = 3e-08, Method: Composition-based stats.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 23/172 (13%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
+ ++ AD+N I + I+ G+ N A IK+ + DL+ ++ K +++L
Sbjct: 71 DRIKHADINTIIDAIRVAGLGNSKARYIKNVAEVIN------DLDLNIEIDCQKLRDFLT 124
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
+ G+G K+ + V L FP+DT++ R+ RLG+ L P +
Sbjct: 125 AIEGIGDKTADVVLLTCFRCREFPIDTHIRRVISRLGF--------------LGSSPKYK 170
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
I +Y R D L LH+ +I G+ C KP C+ C +R C+++
Sbjct: 171 DISEYFKTRFSSED---LLNLHHLLIAHGRKTCKSRKPICDKCVIRDYCKYY 219
>gi|284042265|ref|YP_003392605.1| DNA-(apurinic or apyrimidinic site) lyase [Conexibacter woesei DSM
14684]
gi|283946486|gb|ADB49230.1| DNA-(apurinic or apyrimidinic site) lyase [Conexibacter woesei DSM
14684]
Length = 241
Score = 67.4 bits (163), Expect = 4e-08, Method: Composition-based stats.
Identities = 51/175 (29%), Positives = 79/175 (45%), Gaps = 23/175 (13%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDH---GSVDLEWLRDVPPDKA 497
DW AV A ++ I+ G++ + + RI+ L R + D +DL +LRD
Sbjct: 79 DWRAVLEAPNAEVEEAIRPGGISKVKSKRIQQIL-RAIDDSPEGAGLDLSFLRDASVPDG 137
Query: 498 KEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWV-PLQPLPESLQLHLLE 556
+ YL S G+G K+ CV L PVDT+V R+ +RL + P P E L +L+
Sbjct: 138 QRYLCSLPGVGRKTAACVLLFAYGLRDVPVDTHVSRVGMRLRLLRPGAPF-EELHDEMLD 196
Query: 557 LYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
L P + + E H ++ G+ C +P+C AC +R C
Sbjct: 197 LSPRGQEL-----------------EFHVNLLRHGRRTCHARRPDCPACVLRRVC 234
>gi|322371204|ref|ZP_08045756.1| DNA-(apurinic or apyrimidinic site) lyase [Haladaptatus
paucihalophilus DX253]
gi|320549194|gb|EFW90856.1| DNA-(apurinic or apyrimidinic site) lyase [Haladaptatus
paucihalophilus DX253]
Length = 268
Score = 67.4 bits (163), Expect = 4e-08, Method: Composition-based stats.
Identities = 52/178 (29%), Positives = 82/178 (46%), Gaps = 24/178 (13%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDL--EWLRDVPPDKAKEY 500
E + AD ++A+TI+ G+ N A I + R++ D GS E++R+ P++ +
Sbjct: 90 ETLAKADHGELADTIRSAGLYNQKADVIIESAERVLADFGSAAAFDEFVREEEPNEVRSE 149
Query: 501 LLSFRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
LL G+G K+ +CV L + FPVDT+V RI R+G P E ++
Sbjct: 150 LLDMNGVGPKTADCVLLFSGGQSGVFPVDTHVHRIYRRMGIAPADADHEDVR-------- 201
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGECRH 613
E +++ + C H I FG+ +C+ KP C ACPM C
Sbjct: 202 --EVLEREVPAEKCGFG-------HTASIQFGREYCSARKPACLDGPEACPMFDLCEQ 250
>gi|409074630|gb|EKM75023.1| hypothetical protein AGABI1DRAFT_24137, partial [Agaricus bisporus
var. burnettii JB137-S8]
Length = 235
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 10/124 (8%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPP------ 494
++EA+ A K+ + I+ G+ N A I+ L + HGS L+ L P
Sbjct: 82 NFEAIAAAPKQKVIDAIRSGGLANKKARMIQGLLQAVKEKHGSYSLQHLARKPESTSSAP 141
Query: 495 ----DKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESL 550
D+ + LLS+ G+G K+ CV L + +FPVDT+V R++ LGW+P + +
Sbjct: 142 ALGDDEIMDELLSYDGVGPKTASCVLLFCIGRDSFPVDTHVLRLSHLLGWIPPEANRVTA 201
Query: 551 QLHL 554
Q HL
Sbjct: 202 QAHL 205
>gi|42557689|emb|CAF28664.1| putative endonuclease III [uncultured crenarchaeote]
Length = 219
Score = 67.0 bits (162), Expect = 4e-08, Method: Composition-based stats.
Identities = 50/176 (28%), Positives = 82/176 (46%), Gaps = 27/176 (15%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
D + + A++ I ++I G N+ A RIK + L+ S VP + E
Sbjct: 69 DIDGISKAELKDIRDSIHSIGFYNIKAKRIKQVVQLLIEKFDS-------KVPSNL--EE 119
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
LL+ G+G K+ CV + + A PVD +V RI+ RLG V + + E+ +L L +
Sbjct: 120 LLTLPGVGRKTANCVLVYAFNQPAIPVDVHVHRISNRLGIVNTRKVEET-ELELCNI--- 175
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFAS 616
I K +W E++ +T+G+ C KP CN C ++ C+ + S
Sbjct: 176 ---IDKEMW-----------IEVNDTFVTYGQNVCLPIKPKCNICQLKKMCKFYKS 217
>gi|426195516|gb|EKV45446.1| hypothetical protein AGABI2DRAFT_44066, partial [Agaricus bisporus
var. bisporus H97]
Length = 234
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 10/124 (8%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPP------ 494
++EA+ A K+ + I+ G+ N A I+ L + HGS L+ L P
Sbjct: 81 NFEAIAAAPKQKVIDAIRSGGLANKKARMIQGLLQAVKEKHGSYSLQHLARKPESTSSAP 140
Query: 495 ----DKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESL 550
D+ + LLS+ G+G K+ CV L + +FPVDT+V R++ LGW+P + +
Sbjct: 141 ALRDDEIMDELLSYDGVGPKTASCVLLFCIGRDSFPVDTHVLRLSHLLGWIPPEANRVTA 200
Query: 551 QLHL 554
Q HL
Sbjct: 201 QAHL 204
>gi|399575316|ref|ZP_10769074.1| endoiii-related endonuclease [Halogranum salarium B-1]
gi|399239584|gb|EJN60510.1| endoiii-related endonuclease [Halogranum salarium B-1]
Length = 265
Score = 67.0 bits (162), Expect = 5e-08, Method: Composition-based stats.
Identities = 52/171 (30%), Positives = 77/171 (45%), Gaps = 24/171 (14%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDL--EWLRDVPPDKAKEYLLSFR 505
A+ +++A TI+ G+ N + I +V + G D E++R+ P + LL
Sbjct: 93 AEQSELAETIQSAGLYNQKSEMIVGAAEEIVDEFGGADEFDEFVREEDPQTVRTRLLEIH 152
Query: 506 GLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESI 564
G+G K+ +CV L + FPVDT+V RIA R+G P E ++ HL P +
Sbjct: 153 GVGPKTADCVLLFSGGRGGVFPVDTHVHRIARRMGLAPADADHEEVREHLERDVPAEK-- 210
Query: 565 QKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGEC 611
C H MI FG+ +CT KP C ACP+ C
Sbjct: 211 --------CGFG-------HTAMIQFGREYCTARKPACLDGPEACPLYDLC 246
>gi|408403428|ref|YP_006861411.1| endonuclease III [Candidatus Nitrososphaera gargensis Ga9.2]
gi|408364024|gb|AFU57754.1| putative endonuclease III [Candidatus Nitrososphaera gargensis
Ga9.2]
Length = 223
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 75/167 (44%), Gaps = 27/167 (16%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
AD+++I I G N+ A RIK L+ G VP D + LL G+
Sbjct: 72 ADIDEIKKIIHSIGFYNIKAERIKQVSQMLISKFGG-------RVPSDI--DSLLKLPGV 122
Query: 508 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 567
G K+ CV + A PVD +V RI+ RLG V + PE + L +L + +
Sbjct: 123 GRKTANCVLVYAFDKPAIPVDVHVHRISNRLGLVSTKT-PEQTEQDLSKL------VDRK 175
Query: 568 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
LW ++ + + +G+ C +PNC AC ++ CR++
Sbjct: 176 LWTKV-----------NDTFVMYGQNICLPVRPNCKACDLKKMCRYY 211
>gi|226356223|ref|YP_002785963.1| DNA-(apurinic or apyrimidinic site) lyase [Deinococcus deserti
VCD115]
gi|226318213|gb|ACO46209.1| putative DNA-(apurinic or apyrimidinic site) lyase (Endonuclease
III) [Deinococcus deserti VCD115]
Length = 237
Score = 67.0 bits (162), Expect = 5e-08, Method: Composition-based stats.
Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 17/172 (9%)
Query: 442 WEAVRCADVNKIANTIKERG--MNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKE 499
WEA + I ++ G + M AG I L L G++DL +R + +A+
Sbjct: 54 WEAALLDGPDGIETVLRAAGGGLAQMKAGYIHGILVHLDERLGTLDLSAVRKLNDQEART 113
Query: 500 YLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
L G+G+K+ + L L A PVDTN+ RIA RL VP + PE ++
Sbjct: 114 LLEGLPGVGMKTASLILLFDLLRPALPVDTNIERIAKRLELVPQRWTPEKVERW------ 167
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
+++ + W +R + H + G++ C P C+ C +RG C
Sbjct: 168 -FDAVVRRDWA------ERATF--HVAGVRHGRLTCRPRDPRCDQCVLRGLC 210
>gi|332295602|ref|YP_004437525.1| HhH-GPD family protein [Thermodesulfobium narugense DSM 14796]
gi|332178705|gb|AEE14394.1| HhH-GPD family protein [Thermodesulfobium narugense DSM 14796]
Length = 219
Score = 67.0 bits (162), Expect = 5e-08, Method: Composition-based stats.
Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 19/167 (11%)
Query: 451 NKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLE-WLRDVPPDKAKEYLLSFRGLGL 509
+KI ++IK G+NN + + +++ ++E + + + + E LS G+GL
Sbjct: 70 DKIKDSIKIAGLNNQKTKTLHSLGKKFLQNKNYSNIEDYFKKMKISEIVEVFLSIDGIGL 129
Query: 510 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 569
K+V C L LH AFPVDT++ RI R+ + +++ SI
Sbjct: 130 KTVSCAILFGLHKPAFPVDTHISRIVQRVKKKKISKKDIQIEIE--------GSIH---- 177
Query: 570 PRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFAS 616
D L LH +I G+ C K NC CP++ C + S
Sbjct: 178 ------DWEKLKALHLYLIELGRNICRAKKQNCQMCPIKELCEDYRS 218
>gi|282164121|ref|YP_003356506.1| putative endonuclease III [Methanocella paludicola SANAE]
gi|282156435|dbj|BAI61523.1| putative endonuclease III [Methanocella paludicola SANAE]
Length = 225
Score = 67.0 bits (162), Expect = 5e-08, Method: Composition-based stats.
Identities = 49/163 (30%), Positives = 77/163 (47%), Gaps = 18/163 (11%)
Query: 451 NKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLK 510
+KIA IK G+ + A RIK+ ++RL+ D D++++ P+ A++ LLS G+G K
Sbjct: 69 DKIAELIKIGGLYTIKARRIKE-ISRLILDDYGGDIDFVCTANPEAARKELLSIEGVGPK 127
Query: 511 SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP 570
+ +CV L PVDT+V R+ RLG VP + E L+E P
Sbjct: 128 TADCVLLFACGDDVIPVDTHVFRVTKRLGIVPEKADHEETHRILMENVPA---------- 177
Query: 571 RLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
+R +H +I FG+ C P + C + C +
Sbjct: 178 -----GKRG--SVHVDLIRFGREICRAQSPKHDECFLIDVCDY 213
>gi|322708253|gb|EFY99830.1| base excision DNA repair protein [Metarhizium anisopliae ARSEF 23]
Length = 364
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 69/169 (40%), Gaps = 19/169 (11%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYL 501
WE + ++ +I+ G+ + I L + +G L+ L + + A + +
Sbjct: 185 WEEIANGGQARLEKSIQTGGLAATKSKVIIGILQQTKAKYGLYSLDHLFEASDEDAMKEM 244
Query: 502 LSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 561
+SF+G+G K+ CV L L +F VDT+V RI LGW P E Q HL + P
Sbjct: 245 ISFQGVGPKTASCVLLFCLQRPSFAVDTHVHRITGLLGWRPAAAGREETQAHLDAVVPDE 304
Query: 562 ESIQKYLWPRLCKLDQRTLYELHYQMITFGKVF--CTKSKPNCNACPMR 608
E Y LH +T G+ C N C +R
Sbjct: 305 EK-----------------YPLHVLFVTHGRQCEECKAGGSNAKTCELR 336
>gi|328858824|gb|EGG07935.1| hypothetical protein MELLADRAFT_77474 [Melampsora larici-populina
98AG31]
Length = 371
Score = 66.6 bits (161), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 64/115 (55%), Gaps = 1/115 (0%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLV-RDHGSVDLEWLRDVPPDKAKE 499
++E +R + + ++ TI+ G+ + I LN+++ + G + L+ LR + ++ +
Sbjct: 196 NFEDIRKSGIKELTETIRVGGLAERKSKVIITILNQIISKGDGILSLDKLRLMSDEQVMQ 255
Query: 500 YLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHL 554
L+ F G+G+K+ CV + L FPVDT+V R++ LGWVP + + HL
Sbjct: 256 ELVEFDGVGIKTGACVSMFCLGRDTFPVDTHVHRLSKSLGWVPPKATRDQTFFHL 310
>gi|390959927|ref|YP_006423684.1| putative endoIII-related endonuclease [Terriglobus roseus DSM
18391]
gi|390414845|gb|AFL90349.1| putative endoIII-related endonuclease [Terriglobus roseus DSM
18391]
Length = 258
Score = 66.6 bits (161), Expect = 6e-08, Method: Composition-based stats.
Identities = 48/175 (27%), Positives = 80/175 (45%), Gaps = 14/175 (8%)
Query: 438 DSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKA 497
D + WE +R A + +I +T++ + A ++K L R+ G++ L +L DK
Sbjct: 89 DEVRWERLRDASIPEIEDTLRLATFPDRKAVQLKQTLERITERAGTLSLAFLGKYRTDKV 148
Query: 498 KEYLLSFRGLGLK-SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLE 556
+ ++ G G+K S V +L A +D + RIA+RLG VP ++ L+
Sbjct: 149 RAWIEELPGAGVKASAAVVNFSSLRRRAIAIDGHHQRIAIRLGVVPANATARQVEAALVP 208
Query: 557 LYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
L P W + T+ E H + G+ CT + +CN CP+R C
Sbjct: 209 LAPA-------DWTAV------TMDEHHTLVKKLGQRVCTLREAHCNRCPLREVC 250
>gi|258570499|ref|XP_002544053.1| predicted protein [Uncinocarpus reesii 1704]
gi|237904323|gb|EEP78724.1| predicted protein [Uncinocarpus reesii 1704]
Length = 1143
Score = 66.6 bits (161), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 24/145 (16%)
Query: 437 KDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFL-----------NRLVRD----H 481
K S+DW VR A V +I + IK G+ ++ + IK+ L N L D H
Sbjct: 242 KGSVDWNKVRHAPVGEIRDAIKSGGLADIKSKHIKEILTMVYEENIARRNELQTDGKAKH 301
Query: 482 GS---------VDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVG 532
G+ + L+++ + D+A + + + G+G+K+ CV L L F VDT+V
Sbjct: 302 GNRVDHADEHMLSLDYMHALSKDEAMQRFIKYPGIGVKTAACVVLFCLRRPCFAVDTHVF 361
Query: 533 RIAVRLGWVPLQPLPESLQLHLLEL 557
R++ LGW+P + + E LE+
Sbjct: 362 RLSKWLGWIPSEKVNEITAFRHLEV 386
>gi|448306248|ref|ZP_21496157.1| HhH-GPD family protein [Natronorubrum bangense JCM 10635]
gi|445598662|gb|ELY52717.1| HhH-GPD family protein [Natronorubrum bangense JCM 10635]
Length = 270
Score = 66.6 bits (161), Expect = 6e-08, Method: Composition-based stats.
Identities = 62/220 (28%), Positives = 99/220 (45%), Gaps = 36/220 (16%)
Query: 409 EKQNDFDWDSLRRQV--EANGGKKERPEHTK-------DSLDW-EAVRCADVNKIANTIK 458
++Q+ FD L R + + K +P H D +D E++ AD + +A TI
Sbjct: 50 DRQDAFD--CLVRTILSQNTSDKASQPAHDALLATYDGDDIDLAESLASADQSMLAETIS 107
Query: 459 ERGMNNMLAGRIKDFLNRLVRDHGSVDL--EWLRDVPPDKAKEYLLSFRGLGLKSVECVR 516
G+ N + I D ++ + GS +++D P +E LLS RG+G K+ +CV
Sbjct: 108 GAGLYNQKSETIIDTAAWVLEEFGSAAAFDRYVKDETPSVVRETLLSVRGVGPKTADCVL 167
Query: 517 LLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKL 575
L + FPVDT+V RI R+G P E+++ E++++ + C
Sbjct: 168 LFSGGRSGVFPVDTHVHRIYRRMGIAPPDADHEAVR----------ETLEQDVSAAKCGF 217
Query: 576 DQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGEC 611
H I FG+ +CT P C +ACPM C
Sbjct: 218 G-------HTASIQFGREYCTARTPACLEDPDACPMGDIC 250
>gi|337287836|ref|YP_004627308.1| HhH-GPD family protein [Thermodesulfobacterium sp. OPB45]
gi|334901574|gb|AEH22380.1| HhH-GPD family protein [Thermodesulfobacterium geofontis OPF15]
Length = 218
Score = 66.6 bits (161), Expect = 6e-08, Method: Composition-based stats.
Identities = 50/172 (29%), Positives = 77/172 (44%), Gaps = 16/172 (9%)
Query: 437 KDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDK 496
KD LD + + ++ IK G N A R+K+F+ L+ ++ DL L K
Sbjct: 58 KDLLDPFKLYNIPLESLSQIIKPSGFYNTKAKRLKNFVKFLIENYQG-DLNILFSKGLKK 116
Query: 497 AKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLE 556
A+E LL+ +GLG ++V+ + L + F VD RI R VP + E +Q +E
Sbjct: 117 AREELLNIKGLGKETVDSILLYAGNLPIFVVDAYTYRILHRHSLVPEEATYEEMQALFME 176
Query: 557 LYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMR 608
P D + E H ++ GK FC K +P C CP++
Sbjct: 177 NLP---------------QDPQLFNEFHALLVACGKNFCKKKEPLCETCPLK 213
>gi|374633877|ref|ZP_09706242.1| putative endoIII-related endonuclease [Metallosphaera
yellowstonensis MK1]
gi|373523665|gb|EHP68585.1| putative endoIII-related endonuclease [Metallosphaera
yellowstonensis MK1]
Length = 229
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 82/175 (46%), Gaps = 22/175 (12%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
A + +IA I+ G++N A I++ +++++ + LE + + PDKA+E L+S G+
Sbjct: 67 ASIEEIAKAIRPAGLHNNKAKNIRE-ISKIIHESFHDLLEDILNQSPDKAREILVSMPGI 125
Query: 508 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 567
G K+ + V L+ + FPVDT++ RI+ RLG Y + S+
Sbjct: 126 GTKTADVVLLICKGYRTFPVDTHIFRISRRLGIEGRN-------------YSEISSV--- 169
Query: 568 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSR 622
W R K H +IT G+ C KP C C + C+++ S R
Sbjct: 170 -WVRHVK----DPLNAHLLLITHGRKTCKAVKPKCQECVLIDCCQYYLGVLRSER 219
>gi|159042442|ref|YP_001541694.1| DNA-(apurinic or apyrimidinic site) lyase [Caldivirga
maquilingensis IC-167]
gi|157921277|gb|ABW02704.1| DNA-(apurinic or apyrimidinic site) lyase [Caldivirga
maquilingensis IC-167]
Length = 230
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 68/133 (51%), Gaps = 25/133 (18%)
Query: 486 LEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQP 545
LE++R + D+A+ L++ G+G K+ + V LL L FPVDT++ RI+ RLG
Sbjct: 112 LEFIRGMGTDEARRTLMNLPGVGPKTADVV-LLNLGKPVFPVDTHIMRISHRLG------ 164
Query: 546 LPESLQLHLLELYPVLESIQKY--LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCN 603
V+ +K W +L K ++ + +H +I FG+ C +P C
Sbjct: 165 --------------VMGGYEKVSAFWIKLLKPNEYLM--VHLGLIAFGRAICRSRRPLCE 208
Query: 604 ACPMRGECRHFAS 616
CP+R +C+++ S
Sbjct: 209 HCPLRVKCKYYLS 221
>gi|448605866|ref|ZP_21658459.1| endonuclease III [Haloferax sulfurifontis ATCC BAA-897]
gi|445741189|gb|ELZ92693.1| endonuclease III [Haloferax sulfurifontis ATCC BAA-897]
Length = 268
Score = 66.6 bits (161), Expect = 7e-08, Method: Composition-based stats.
Identities = 52/176 (29%), Positives = 79/176 (44%), Gaps = 24/176 (13%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGS-VDLE-WLRDVPPDKAKEY 500
E++ AD I + I+ G+ N + I+ ++ D GS D + ++R+ P ++
Sbjct: 90 ESLAAADREGIVDAIRSGGLYNQKSNLIQGVAEEVLADFGSEADFDRYVREEDPATVRDR 149
Query: 501 LLSFRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
LL +G+G K+ +CV L FPVDT+V RIA R+G P E ++ L P
Sbjct: 150 LLEMKGVGPKTADCVLLFAGGRGGVFPVDTHVHRIARRIGLAPADADHEGVRAALERDIP 209
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGEC 611
D++ + H MI FG+ FC P C ACPM C
Sbjct: 210 ----------------DEKCGFG-HTAMIQFGREFCKARTPACLDGPGACPMADVC 248
>gi|257389114|ref|YP_003178887.1| DNA-(apurinic or apyrimidinic site) lyase [Halomicrobium mukohataei
DSM 12286]
gi|257171421|gb|ACV49180.1| DNA-(apurinic or apyrimidinic site) lyase [Halomicrobium mukohataei
DSM 12286]
Length = 270
Score = 66.2 bits (160), Expect = 7e-08, Method: Composition-based stats.
Identities = 51/187 (27%), Positives = 83/187 (44%), Gaps = 24/187 (12%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHG-SVDLE-WLRDVPPDKAKEYLLSFR 505
AD ++A TI+ G++N + I R+ ++G + + ++R P + LL +
Sbjct: 97 ADQQRLAETIQPAGLHNQKSETIVRLAGRVCEEYGFGAEFDAFVRGGDPGDVRSALLDMK 156
Query: 506 GLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESI 564
G+G K+ +CV L FPVDT+V RIA R+G P E ++ L + P +
Sbjct: 157 GVGPKTADCVLLFAGGRGGVFPVDTHVHRIARRMGLAPADADHEGVRAALEDDIPAEK-- 214
Query: 565 QKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGECRHFASAFAS 620
C H MI FG+ +C+ KP C ACP+ +C + A+
Sbjct: 215 --------CGFG-------HTAMIQFGREYCSARKPACLDDPEACPLADQCEQLGVSPAT 259
Query: 621 SRLALPG 627
+ P
Sbjct: 260 GEVFDPA 266
>gi|322700299|gb|EFY92055.1| base excision DNA repair protein [Metarhizium acridum CQMa 102]
Length = 364
Score = 66.2 bits (160), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 69/169 (40%), Gaps = 19/169 (11%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYL 501
WE + ++ +I+ G+ + I L + +G L+ L + + A + +
Sbjct: 185 WEEIANGGQARLEKSIQTGGLAATKSKVIIGILQQTKAKYGVYSLDHLFEASDEDAMKEM 244
Query: 502 LSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 561
+SF+G+G K+ CV L L +F VDT+V RI LGW P E Q HL + P
Sbjct: 245 ISFQGVGPKTASCVLLFCLQRPSFAVDTHVHRITGLLGWRPAAAGREETQAHLDAVVPDE 304
Query: 562 ESIQKYLWPRLCKLDQRTLYELHYQMITFGKVF--CTKSKPNCNACPMR 608
E Y LH +T G+ C N C +R
Sbjct: 305 EK-----------------YPLHVLFVTHGRQCEECKAGGRNAKICELR 336
>gi|449469507|ref|XP_004152461.1| PREDICTED: DEMETER-like protein 2-like [Cucumis sativus]
Length = 234
Score = 66.2 bits (160), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 53/90 (58%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYL 501
WE V A+ I + I+ G+ + A IK+ L+ L + G + LE+LRD+ D+ K L
Sbjct: 143 WEDVLSAESKCIEDAIRCGGLASTKASCIKNILSSLSKRRGKLCLEFLRDLSIDEIKAEL 202
Query: 502 LSFRGLGLKSVECVRLLTLHHLAFPVDTNV 531
+F+G+G K+V CV + L FPVDT+V
Sbjct: 203 STFKGIGPKTVACVLMFNLQKDDFPVDTHV 232
>gi|354611948|ref|ZP_09029900.1| HhH-GPD family protein [Halobacterium sp. DL1]
gi|353191526|gb|EHB57032.1| HhH-GPD family protein [Halobacterium sp. DL1]
Length = 269
Score = 66.2 bits (160), Expect = 9e-08, Method: Composition-based stats.
Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 26/172 (15%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGS---VDLEWLRDVPPDKAKEYLLSF 504
A +++A TI G+ N + + ++ ++G D E++R PD ++ LL
Sbjct: 96 AHQDELAETISSAGLYNQKSETLIRLAGQICEEYGGEAGFD-EFVRTEDPDAVRDALLDM 154
Query: 505 RGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLES 563
+G+G K+ +CV L + FPVDT+V RIA R+G P E ++ E+
Sbjct: 155 KGVGPKTADCVLLFSGGRAGVFPVDTHVHRIARRMGLAPPDADHEGVR----------EA 204
Query: 564 IQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGEC 611
++ + C H MI FG+ +CT KP C ACP+ C
Sbjct: 205 LEAAVPAEACGFG-------HTAMIQFGREYCTARKPACLDGPEACPLYDYC 249
>gi|390601386|gb|EIN10780.1| DNA glycosylase [Punctularia strigosozonata HHB-11173 SS5]
Length = 359
Score = 66.2 bits (160), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 76/180 (42%), Gaps = 31/180 (17%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPP------ 494
++ A+ A ++ + I+ G+ N AG I++ L + HG L+ L P
Sbjct: 148 NFAAIADAPRERVVDAIRHGGLANKKAGVIQNLLKEIKARHGDYSLQHLASRPSKSALSD 207
Query: 495 DKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHL 554
D+ L+S+ G+G K+ CV L L +F VDT+V R++ LGWVP + Q HL
Sbjct: 208 DEIMHELVSYDGVGPKTASCVLLFCLERPSFAVDTHVFRLSKMLGWVPAKSDRVLAQAHL 267
Query: 555 LELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRG---EC 611
P Y LH + G+V C P C A P G EC
Sbjct: 268 DARIP-----------------GELKYGLHCGFVKHGRV-C----PACKAGPSGGGKVEC 305
>gi|170288346|ref|YP_001738584.1| HhH-GPD family protein [Thermotoga sp. RQ2]
gi|170175849|gb|ACB08901.1| HhH-GPD family protein [Thermotoga sp. RQ2]
Length = 220
Score = 66.2 bits (160), Expect = 9e-08, Method: Composition-based stats.
Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 19/164 (11%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
K+A IK G N+ R+K L + ++++ + +L LRD+P +E LL +G+G ++
Sbjct: 70 KVAELIKPAGFFNIKTKRLKALL-KFLKEY-NYNLSRLRDLPTHILRERLLKIKGIGKET 127
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
+ + L L F VD+ R+ R+ + L E +L + YP
Sbjct: 128 ADAILLYALEKPIFVVDSYTRRLLKRIFNIELNDYDEVQKLFMTH-YPE----------- 175
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFA 615
D R E H ++ K FC K+ P C CP+R EC H +
Sbjct: 176 ----DVRLYQEFHGLIVEHAKKFCNKT-PKCGVCPLRKECYHVS 214
>gi|147919100|ref|YP_687169.1| endonuclease III [Methanocella arvoryzae MRE50]
gi|110622565|emb|CAJ37843.1| predicted endonuclease III [Methanocella arvoryzae MRE50]
Length = 243
Score = 65.9 bits (159), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 85/177 (48%), Gaps = 23/177 (12%)
Query: 453 IANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSV 512
IA+ I+ G++ A IK+ +++LV D L+++ + P+ A++ LL+ +G+G K+
Sbjct: 73 IADLIRIGGLHEQKAKLIKN-ISQLVIDEYDGTLDFVCETDPEVARKELLTIKGVGPKTA 131
Query: 513 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRL 572
+CV L + PVDT+V RI RLG VP + E + L+E P E ++
Sbjct: 132 DCVLLFSCDRDVIPVDTHVFRITKRLGIVPEKADHEKARQILMEKVP--EGLRG------ 183
Query: 573 CKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPE 629
H +I FG+ C P + C + C +A ++R GPE
Sbjct: 184 ---------STHVALIKFGREICKAQNPRHDQCFLLDLC-DYARQVGTAR----GPE 226
>gi|335437951|ref|ZP_08560708.1| DNA-(apurinic or apyrimidinic site) lyase [Halorhabdus tiamatea
SARL4B]
gi|334893555|gb|EGM31766.1| DNA-(apurinic or apyrimidinic site) lyase [Halorhabdus tiamatea
SARL4B]
Length = 281
Score = 65.9 bits (159), Expect = 1e-07, Method: Composition-based stats.
Identities = 58/200 (29%), Positives = 87/200 (43%), Gaps = 26/200 (13%)
Query: 419 LRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLV 478
L R +G + E D +D A+ A+ ++A TI G+ N + RI R+
Sbjct: 80 LERYGSLDGEDADAAESETDLVD--ALADAEQAELAETISGAGLYNQKSARISQIAERVR 137
Query: 479 RDHGSVDL--EWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLT-LHHLAFPVDTNVGRIA 535
+G D ++R+ P + +E LL+ G+G K+ +CV L FPVDT+V RI
Sbjct: 138 EKYGGEDEFDAFVREEPAEAVRETLLAMTGVGPKTADCVLLFAGGRDGVFPVDTHVHRIY 197
Query: 536 VRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFC 595
RLG P E+++ L E P + C H I FG+ +C
Sbjct: 198 RRLGVAPPDADHEAVRAVLEETVP----------EKKCGFG-------HTATIQFGREYC 240
Query: 596 TKSKPNC----NACPMRGEC 611
+ KP C ACP+ C
Sbjct: 241 SARKPACLDGPEACPLDDLC 260
>gi|448419884|ref|ZP_21580728.1| endoiii-related endonuclease [Halosarcina pallida JCM 14848]
gi|445674798|gb|ELZ27335.1| endoiii-related endonuclease [Halosarcina pallida JCM 14848]
Length = 283
Score = 65.9 bits (159), Expect = 1e-07, Method: Composition-based stats.
Identities = 58/198 (29%), Positives = 88/198 (44%), Gaps = 27/198 (13%)
Query: 424 EANGGKKERP--EHTKDSLDW-EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRD 480
EA + R E T++ D E++ A+ +++A TI G+ N + I R+ +
Sbjct: 82 EARSASETRAGSEATRERSDLAESLAAAEQSELAETISSAGLYNQKSEMIIGAAERICEE 141
Query: 481 HGSVD--LEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVR 537
G D ++ P + +E LL G+G K+ +CV L + FPVDT+V RIA R
Sbjct: 142 FGGADGFDAFVTGGDPGEVRERLLDIHGVGPKTADCVLLFSGGRGGVFPVDTHVHRIARR 201
Query: 538 LGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTK 597
+G P E+++ HL P + C H MI FG+ +CT
Sbjct: 202 MGLAPADADHEAVREHLERDVPAEK----------CGFG-------HTAMIQFGREYCTA 244
Query: 598 SKPNC----NACPMRGEC 611
KP C ACP+ C
Sbjct: 245 RKPACLDGPEACPLYDLC 262
>gi|55376682|ref|YP_134533.1| endonuclease III [Haloarcula marismortui ATCC 43049]
gi|448642537|ref|ZP_21678496.1| endonuclease III [Haloarcula sinaiiensis ATCC 33800]
gi|55229407|gb|AAV44827.1| endonuclease III [Haloarcula marismortui ATCC 43049]
gi|445759337|gb|EMA10615.1| endonuclease III [Haloarcula sinaiiensis ATCC 33800]
Length = 233
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 18/163 (11%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRD-HGSVDLEWLRDVPPDKAKE 499
D+ A+ AD +++A+TI+ G+ + A RI+ L + + G+ L +L +P D+AK
Sbjct: 74 DFAAIESADHDELADTIRVAGLPDQKAARIQRALAAIREETGGAYSLAFLDAMPTDEAKG 133
Query: 500 YLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
+L +G+G K+ V VDT+V R++ R G V + L + P
Sbjct: 134 WLTDIKGVGPKTASVVLNFHFGKPTMAVDTHVERVSKRFGLVTESATNKRAHDELDAIIP 193
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC 602
D+ T Y LH +IT G+ FC+ P+C
Sbjct: 194 ----------------DELT-YPLHVLLITHGREFCSARSPDC 219
>gi|346321129|gb|EGX90729.1| HhH-GPD family base excision DNA repair protein [Cordyceps
militaris CM01]
Length = 330
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 86/214 (40%), Gaps = 36/214 (16%)
Query: 417 DSLRRQVEANGGKKERPEHTKDSLD--------WEAVRCADVNKIANTIKERGMNNMLAG 468
D+L R + + K S+D WEA+ ++ I+ G+ +
Sbjct: 139 DALVRTILSQNTSSANSTRAKRSMDAAYGRSDAWEAIAAGGQPQLQAAIRCGGLAATKSR 198
Query: 469 RIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVD 528
I + L + +G L+ L +A E LL+F G+G K+ CV L L +F VD
Sbjct: 199 VIVNLLAAVHSKYGMYSLDHLFHASDTEAMEELLAFPGVGPKTASCVLLFCLQRPSFAVD 258
Query: 529 TNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMI 588
T+V RIA LGW P + E Q HL P ++++ Y LH +I
Sbjct: 259 THVYRIAGILGWRPPEATREQAQAHLDASIP--DALK---------------YPLHVLLI 301
Query: 589 TFGKVFCTKSKPNCNACPMR---GECRHFASAFA 619
G+ C AC + GE AFA
Sbjct: 302 AHGR--------TCRACGAKAAAGESCKLRKAFA 327
>gi|448574894|ref|ZP_21641417.1| endonuclease III [Haloferax larsenii JCM 13917]
gi|445732573|gb|ELZ84155.1| endonuclease III [Haloferax larsenii JCM 13917]
Length = 267
Score = 65.9 bits (159), Expect = 1e-07, Method: Composition-based stats.
Identities = 49/162 (30%), Positives = 74/162 (45%), Gaps = 24/162 (14%)
Query: 457 IKERGMNNMLAGRIKDFLNRLVRDHGS-VDL-EWLRDVPPDKAKEYLLSFRGLGLKSVEC 514
I+ G+ N + I ++ D GS D +W+R+ P+ +E LL +G+G K+ +C
Sbjct: 103 IRSAGLYNQKSKLIIGVAEAVLSDFGSEADFDQWVREGDPETVRERLLEMKGVGPKTADC 162
Query: 515 VRLLT-LHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLC 573
V L FPVDT+V RI+ R+G P E ++ E +++ + C
Sbjct: 163 VLLFAGGRDGVFPVDTHVHRISRRIGLAPADADHEGVR----------ERLERDVPGEAC 212
Query: 574 KLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGEC 611
H MI FG+ +CT KP C ACPM C
Sbjct: 213 GFG-------HTAMIQFGREYCTARKPACLDGPEACPMDDVC 247
>gi|448627973|ref|ZP_21672205.1| endonuclease III [Haloarcula vallismortis ATCC 29715]
gi|445758595|gb|EMA09901.1| endonuclease III [Haloarcula vallismortis ATCC 29715]
Length = 233
Score = 65.9 bits (159), Expect = 1e-07, Method: Composition-based stats.
Identities = 48/164 (29%), Positives = 79/164 (48%), Gaps = 18/164 (10%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHG-SVDLEWLRDVPPDKAKE 499
D+EA+ AD +K+A+TI+ G+ + A RI+ L + + G + L +L +P ++AK
Sbjct: 74 DFEAIESADHDKLADTIRVAGLPDQKAARIQRALAAIREETGGAYSLAFLDAMPAEEAKG 133
Query: 500 YLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
+L +G+G K+ V VDT+V R++ R G V + L L P
Sbjct: 134 WLTDIKGVGPKTASVVLNFHFGKPTMAVDTHVERVSKRFGLVTESATNKRAHDELDALIP 193
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCN 603
D+ T Y LH +IT G+ FC+ +P+C+
Sbjct: 194 ----------------DELT-YPLHVLLITHGREFCSARRPDCS 220
>gi|223995635|ref|XP_002287491.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220976607|gb|EED94934.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 251
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 18/146 (12%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLS-FRG 506
D +I I+ G+ + A RI+ L + ++ + E+L+ D+ + LS F+G
Sbjct: 95 VDTTRIETAIRVAGLAKIRAARIQGMLKTVQQERNDANFEYLQFYDSDEEIQKELSRFKG 154
Query: 507 LGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQK 566
+G K++ CV L L FPVDT+V RI ++GW+ ES +L E
Sbjct: 155 MGPKTISCVLLFALGRPDFPVDTHVLRITKQIGWIGASHSRESAYEYLNERV-------- 206
Query: 567 YLWPRLCKLDQRTLYELHYQMITFGK 592
P CK+D LH ++T GK
Sbjct: 207 ---PNECKMD------LHCLLVTHGK 223
>gi|356565037|ref|XP_003550751.1| PREDICTED: DEMETER-like protein 2-like [Glycine max]
Length = 172
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 50/87 (57%)
Query: 456 TIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECV 515
+I+ G+ A IK+ L L G + LE+LRD+ D+ K L F+G+G K+V CV
Sbjct: 19 SIRCGGLAPTKASCIKNVLRCLRERRGELCLEYLRDLSVDEVKAELSLFKGIGPKTVACV 78
Query: 516 RLLTLHHLAFPVDTNVGRIAVRLGWVP 542
+ L FPVDT++ IA +GWVP
Sbjct: 79 LMFNLQQDDFPVDTHIFEIAKTMGWVP 105
>gi|332796258|ref|YP_004457758.1| DNA-(apurinic or apyrimidinic site) lyase [Acidianus hospitalis W1]
gi|332693993|gb|AEE93460.1| DNA-(apurinic or apyrimidinic site) lyase [Acidianus hospitalis W1]
Length = 232
Score = 65.5 bits (158), Expect = 1e-07, Method: Composition-based stats.
Identities = 46/168 (27%), Positives = 80/168 (47%), Gaps = 20/168 (11%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
+ + IA+ I+ G+ + A RIK+ L +++++ + DL + D P +A+E LLS G+
Sbjct: 74 SSLEDIASCIRNIGIYRIKAERIKE-LAKIIKEKYNGDLNKILDKEPKEAREELLSLPGI 132
Query: 508 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 567
G K+ + V L + FPVDT++ RI+ RLG E + L+ L+
Sbjct: 133 GEKTADVVLLTCKGYPYFPVDTHIKRISQRLGIASGS--YEQISASLMRLF--------- 181
Query: 568 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFA 615
D + E H+ +I G+ C P C C + C +++
Sbjct: 182 --------DPKDYLEAHHLLIAHGRNVCKAKNPLCEKCILNDCCEYYS 221
>gi|386857015|ref|YP_006261192.1| Endonuclease III [Deinococcus gobiensis I-0]
gi|380000544|gb|AFD25734.1| Endonuclease III, putative [Deinococcus gobiensis I-0]
Length = 213
Score = 65.5 bits (158), Expect = 1e-07, Method: Composition-based stats.
Identities = 51/192 (26%), Positives = 81/192 (42%), Gaps = 18/192 (9%)
Query: 442 WEAVRCADVNKIANTIKERG--MNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKE 499
WEA + I T++ G + + A + L L G + L +L D+ ++A+
Sbjct: 29 WEAALLDGPDGIETTLRRAGGGLTRIKADYLYGILAALEGSRGELSLRFLHDLGDEEARA 88
Query: 500 YLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
L G+G ++ V L L A PVDTN+ R+A RL V PE+ + E +
Sbjct: 89 VLEGLPGVGQRTASLVLLFDLVRPAMPVDTNIARMAARLDLV-----PETWSTNRTEAW- 142
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFA 619
+ ++ D T Y LH + G CT +P C C +R C A+ F
Sbjct: 143 ---------FGQVIARDWETRYALHLSGVRHGHETCTPRRPLCGRCVLRDLCPS-AALFL 192
Query: 620 SSRLALPGPEEK 631
+ P P ++
Sbjct: 193 EGEVPEPSPTKR 204
>gi|85375167|ref|YP_459229.1| endonuclease III family protein [Erythrobacter litoralis HTCC2594]
gi|84788250|gb|ABC64432.1| endonuclease III family protein [Erythrobacter litoralis HTCC2594]
Length = 225
Score = 65.5 bits (158), Expect = 1e-07, Method: Composition-based stats.
Identities = 51/180 (28%), Positives = 82/180 (45%), Gaps = 14/180 (7%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYL 501
WEAV A V ++ ++ + ++ A R+KD LN ++ + G+VDL L ++ + A E+L
Sbjct: 58 WEAVAAAPVEELEVRLQRQTFPSVAAQRLKDCLNAIIAERGAVDLRHLSNLAIEDAMEWL 117
Query: 502 LSFRGLGLKSVECVRLLTL-HHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
G+ K+ V +L A VD + RI R+G VP P ++ + Y
Sbjct: 118 ERLPGVARKNSAGVMNASLFERKAMVVDGHHRRIMQRMGMVP--PKADTAR-----TYDA 170
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFAS 620
L I W + E H + G+ C P+C CP+R +CR A A+
Sbjct: 171 LMPIVPEEW------SAADMDEHHLLLKKLGQTHCRPRAPHCEGCPVRADCRTGTGARAA 224
>gi|171684933|ref|XP_001907408.1| hypothetical protein [Podospora anserina S mat+]
gi|170942427|emb|CAP68079.1| unnamed protein product [Podospora anserina S mat+]
Length = 813
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 66/135 (48%), Gaps = 20/135 (14%)
Query: 439 SLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRL-------VRDHGSVD------ 485
S+DWE VR + + N+I+ G A IK L+++ ++ G+ +
Sbjct: 474 SIDWEKVRVSSPQALVNSIRISGNGPKKAQHIKLILDKVYEENLERMKQAGTAENTDKDG 533
Query: 486 -------LEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRL 538
L+++ + D+A E +SF G+G+K+ CV L L F VDT+V + L
Sbjct: 534 APPDLLSLDYMHAMTKDQAMEKFVSFPGIGIKTAACVSLFCLRMPCFAVDTHVHKFCRWL 593
Query: 539 GWVPLQPLPESLQLH 553
GW P++ P+++ H
Sbjct: 594 GWTPVKADPDNVFRH 608
>gi|333987518|ref|YP_004520125.1| HhH-GPD family protein [Methanobacterium sp. SWAN-1]
gi|333825662|gb|AEG18324.1| HhH-GPD family protein [Methanobacterium sp. SWAN-1]
Length = 212
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 27/167 (16%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
A + I IK+ G ++ A R+K+ +++++ H D DV PD KE LLS G+
Sbjct: 67 APIENIEILIKKSGFYHVKAKRVKE-VSKII--HEEYD-----DVVPDDMKE-LLSLPGV 117
Query: 508 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 567
G K+ CV + H A PVD +V RI+ R+G V + PE ++ L++ P +KY
Sbjct: 118 GRKTANCVLVYGFHKDAIPVDVHVHRISNRIGLVDTKT-PEQTEVELMKTVP-----RKY 171
Query: 568 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
P L+ ++ FG+ C P CP+ C ++
Sbjct: 172 WLP------------LNDLLVQFGQTICRPIGPKHEICPIADLCDYY 206
>gi|425773936|gb|EKV12261.1| Base excision DNA repair protein [Penicillium digitatum PHI26]
gi|425782386|gb|EKV20298.1| Base excision DNA repair protein [Penicillium digitatum Pd1]
Length = 307
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 72/172 (41%), Gaps = 23/172 (13%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
D+ A+ K+ N + G++ A I L ++ H + L L + ++ E
Sbjct: 143 DYNAISKGGETKLQNVLSCGGLHIRKAKFIMSILRQVKARHDAYTLNHLWPLDDEQVMEE 202
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
LS+ G+G K+ CV LTL+ F VDT++ RI LGW PL PE + HL
Sbjct: 203 FLSYNGVGPKTASCVLALTLNRQRFVVDTHIYRITGFLGWRPLHATPEQARAHL------ 256
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNA-CPMRGEC 611
K+ Y LH IT G + P C A ++G C
Sbjct: 257 -----------ETKIPDEFKYSLHLLFITHG-----RECPECKAGGKLKGSC 292
>gi|15643148|ref|NP_228192.1| repair endonuclease [Thermotoga maritima MSB8]
gi|4980885|gb|AAD35467.1|AE001718_4 repair endonuclease, putative [Thermotoga maritima MSB8]
Length = 232
Score = 65.5 bits (158), Expect = 2e-07, Method: Composition-based stats.
Identities = 45/164 (27%), Positives = 78/164 (47%), Gaps = 19/164 (11%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
K+A I+ G N+ R+K+ L + ++++ + +L LRD+P +E LL +G+G ++
Sbjct: 82 KVAELIRPAGFFNIKTKRLKELL-KFLKEY-NYNLSRLRDLPTHILRERLLKIKGIGKET 139
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
+ + L L F VD+ R+ R+ + L E +L + YP
Sbjct: 140 ADAILLYALEKPVFVVDSYTRRLLKRIFNIELNDYDEVQKLFMTH-YPE----------- 187
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFA 615
D R E H ++ K FC+K+ P C CP++ EC H +
Sbjct: 188 ----DVRLYQEFHGLIVEHAKKFCSKT-PKCGVCPLKKECCHVS 226
>gi|260892299|ref|YP_003238396.1| DNA-(apurinic or apyrimidinic site) lyase [Ammonifex degensii KC4]
gi|260864440|gb|ACX51546.1| DNA-(apurinic or apyrimidinic site) lyase [Ammonifex degensii KC4]
Length = 240
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 77/161 (47%), Gaps = 23/161 (14%)
Query: 451 NKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLK 510
++A ++ G++ R L L R+ DL+ L ++P +A++ LL G+G K
Sbjct: 85 QELAEILRPVGLHR----RKAKLLRTLAREVVDFDLKALSNLPTFEARQRLLRLPGVGPK 140
Query: 511 SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP 570
+ + V LL L H FPVDT++ RI RL W +P E +Q +EL+ S + Y
Sbjct: 141 TAD-VLLLHLGHPLFPVDTHIARITWRLSWAK-RPCYEEIQKVWMELF----SPEDY--- 191
Query: 571 RLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
E H ++I +G+ C KP C C +R C
Sbjct: 192 ----------QEAHLRLIQWGREICQARKPRCFTCFLRICC 222
>gi|410464085|ref|ZP_11317553.1| putative endonuclease III-like protein [Desulfovibrio magneticus
str. Maddingley MBC34]
gi|409982800|gb|EKO39221.1| putative endonuclease III-like protein [Desulfovibrio magneticus
str. Maddingley MBC34]
Length = 216
Score = 65.1 bits (157), Expect = 2e-07, Method: Composition-based stats.
Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 16/168 (9%)
Query: 440 LDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKE 499
LD A+ A + +A I+ G + AGR+K+ + +V D G DL L +A++
Sbjct: 60 LDPYALHAASLEAVAEPIRPAGHFRVKAGRLKNLMALIVEDLGG-DLTALAGYDLGQARD 118
Query: 500 YLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
LL+ +G+G ++ + + L L+ AF VD RI R G VP + L+ ++ P
Sbjct: 119 KLLAVKGVGPETADSILLYGLNLPAFVVDAYTARICFRHGLVPEDAGYDELRELFMDALP 178
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPM 607
E + Y E H ++ G +C P C ACP+
Sbjct: 179 --EDVGLY-------------NEFHALLVRVGNAWCRPRAPKCAACPL 211
>gi|327310305|ref|YP_004337202.1| DNA-(apurinic or apyrimidinic site) lyase [Thermoproteus uzoniensis
768-20]
gi|326946784|gb|AEA11890.1| DNA-(apurinic or apyrimidinic site) lyase [Thermoproteus uzoniensis
768-20]
Length = 213
Score = 65.1 bits (157), Expect = 2e-07, Method: Composition-based stats.
Identities = 49/160 (30%), Positives = 77/160 (48%), Gaps = 25/160 (15%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
++A I+ GM+ + A + L L R VDL + D+ ++A+ +L S G+G K+
Sbjct: 71 RLAELIRPAGMHRVRARK----LIELSRSLSDVDLSRIADMDVEEARRFLTSLPGVGEKT 126
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
+ V L L AFPVDT++ RIA R W + E + + L P ++YL
Sbjct: 127 ADVV-LANLGKPAFPVDTHITRIARR--WGIGKRYGEISRWFMERLPP-----ERYL--- 175
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
E+H ++I FG+ +C P C CP+R C
Sbjct: 176 ----------EVHLKLIQFGRDYCRARSPRCGECPVRDLC 205
>gi|84489308|ref|YP_447540.1| endonuclease III [Methanosphaera stadtmanae DSM 3091]
gi|84372627|gb|ABC56897.1| putative endonuclease III [Methanosphaera stadtmanae DSM 3091]
Length = 219
Score = 65.1 bits (157), Expect = 2e-07, Method: Composition-based stats.
Identities = 53/174 (30%), Positives = 78/174 (44%), Gaps = 27/174 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
E + A V+ IAN +++ G N+ A RIK+ N L+ ++ V PD +E LL
Sbjct: 69 EEIADAPVDDIANLVRQAGFYNVKAARIKEVSNILLEEYDGV--------VPDTLEE-LL 119
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
G+G K+ CV + A PVD +V RI+ RLG V PE + L E+ P
Sbjct: 120 KLPGVGRKTANCVLVFGFQKDAIPVDVHVHRISNRLGLVHTDK-PEDTEEVLREIVP--- 175
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFAS 616
Q+Y P ++ M+ FG+ C P CP C+ + S
Sbjct: 176 --QEYWLP------------INDLMVQFGQNICKPINPQHIECPFTDLCQLYKS 215
>gi|374385131|ref|ZP_09642640.1| endonuclease III [Odoribacter laneus YIT 12061]
gi|373226557|gb|EHP48881.1| endonuclease III [Odoribacter laneus YIT 12061]
Length = 211
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 74/175 (42%), Gaps = 32/175 (18%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDH-GSV--DLEWLRDVPPDKAKE 499
EA+ A+V +I IK N A + +LV D G V D+E L+ +P
Sbjct: 63 EAMAKAEVGEIYELIKSISYPNNKAKHLSAMAKKLVSDFDGKVPDDMELLQTLP------ 116
Query: 500 YLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
G+G K+ + + H A PVDT+V R+A R+G V P + L++ P
Sbjct: 117 ------GVGRKTANVIEAVAFHRPAMPVDTHVFRVADRIGLVTNATTPLETEKQLVKNIP 170
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
L H+ +I G+ CT +P C +C +R CR+F
Sbjct: 171 -----------------SEILSTAHHWLILHGRYTCTARRPKCESCGIRDYCRYF 208
>gi|429853280|gb|ELA28361.1| HhH-GPD family base excision DNA repair protein [Colletotrichum
gloeosporioides Nara gc5]
Length = 502
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 95/250 (38%), Gaps = 58/250 (23%)
Query: 439 SLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVR------------------- 479
S+DW AVR + + K+ + G++ + + ++K+ L ++
Sbjct: 234 SIDWNAVRLSPIQKLRKAMITGGLSKVKSEQMKEILEKVFEENQLRKAAFVKEKESGEAA 293
Query: 480 --------------------DHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLT 519
D+G + L+ +R +P +A +L ++G+G+K+ C+ L
Sbjct: 294 SVKGAAKMSQGQKDHQLLKIDNGILTLDHIRTMPAAEAMPEILQYKGIGIKTTSCLLLFC 353
Query: 520 LHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRT 579
L +F VDT+V R + LGWVP + + H Y P K
Sbjct: 354 LQQPSFAVDTHVWRFCLWLGWVPRKASADKTFKHC-----------DYRVPDELKYGLHQ 402
Query: 580 LYELHYQMITFGKVFCTKSKPNCNA--CPMRGECRHFASAFASSRLALPGPEEKAIVSAN 637
L+ +H Q + K NA CP+ H F P KA S
Sbjct: 403 LFIVHGQQCYRCRSGTAKGTAQWNAVVCPL----EHLLDRFEKHEAKAPKNSTKA--SLK 456
Query: 638 ENRTNTQNPA 647
E +T+ + P+
Sbjct: 457 EEKTDIEEPS 466
>gi|418046315|ref|ZP_12684409.1| HhH-GPD family protein [Thermotoga maritima MSB8]
gi|351675868|gb|EHA59028.1| HhH-GPD family protein [Thermotoga maritima MSB8]
Length = 220
Score = 64.7 bits (156), Expect = 2e-07, Method: Composition-based stats.
Identities = 45/164 (27%), Positives = 78/164 (47%), Gaps = 19/164 (11%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
K+A I+ G N+ R+K+ L + ++++ + +L LRD+P +E LL +G+G ++
Sbjct: 70 KVAELIRPAGFFNIKTKRLKELL-KFLKEY-NYNLSRLRDLPTHILRERLLKIKGIGKET 127
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
+ + L L F VD+ R+ R+ + L E +L + YP
Sbjct: 128 ADAILLYALEKPVFVVDSYTRRLLKRIFNIELNDYDEVQKLFMTH-YPE----------- 175
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFA 615
D R E H ++ K FC+K+ P C CP++ EC H +
Sbjct: 176 ----DVRLYQEFHGLIVEHAKKFCSKT-PKCGVCPLKKECCHVS 214
>gi|15789648|ref|NP_279472.1| endonuclease III [Halobacterium sp. NRC-1]
gi|169235361|ref|YP_001688561.1| DNA-(apurinic or apyrimidinic site) lyase endonuclease III
[Halobacterium salinarum R1]
gi|10580010|gb|AAG18952.1| endonuclease III [Halobacterium sp. NRC-1]
gi|167726427|emb|CAP13212.1| endonuclease III [Halobacterium salinarum R1]
Length = 265
Score = 64.3 bits (155), Expect = 3e-07, Method: Composition-based stats.
Identities = 49/166 (29%), Positives = 72/166 (43%), Gaps = 24/166 (14%)
Query: 453 IANTIKERGMNNMLAGRIKDFLNRLVRDHGSVD--LEWLRDVPPDKAKEYLLSFRGLGLK 510
+A+TI G+ N + I +R+ ++G D ++R+ PD + LL G+G K
Sbjct: 98 LADTISMAGLYNQKSATIIRIADRVCEEYGGADGFDAFVREGDPDAVRAALLDMTGVGPK 157
Query: 511 SVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 569
+ +CV L FPVDT+V RIA R+G P E+++ L P
Sbjct: 158 TADCVLLFAGGAPGVFPVDTHVHRIARRMGIAPAAADHEAVRAALEAAVP---------- 207
Query: 570 PRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGEC 611
C H MI FG+ +CT P C ACP+ C
Sbjct: 208 DAACGFG-------HTAMIQFGREYCTARDPACLDDPAACPLAEHC 246
>gi|320354681|ref|YP_004196020.1| DNA-3-methyladenine glycosylase III [Desulfobulbus propionicus DSM
2032]
gi|320123183|gb|ADW18729.1| DNA-3-methyladenine glycosylase III [Desulfobulbus propionicus DSM
2032]
Length = 214
Score = 64.3 bits (155), Expect = 3e-07, Method: Composition-based stats.
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 453 IANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSV 512
+A I+ G N+ AGR+ + L+ + + HG +L+ + P + +E LL+ +G+G ++
Sbjct: 73 LAEYIRPAGYYNIKAGRLHNLLSTINQQHGG-NLQAFLEQPLPQLREQLLAIKGIGRETA 131
Query: 513 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRL 572
+ + L F VD RI VR L++ E+IQ+ L
Sbjct: 132 DSILLYAAGLPIFVVDAYTHRILVRH--------------QLIDEECGYEAIQELFMDNL 177
Query: 573 CKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRG 609
D R E H ++ G V+C K P+C +CP++G
Sbjct: 178 A-CDPRLYNEYHALLVRVGNVYCKKKHPDCASCPLQG 213
>gi|448385412|ref|ZP_21563918.1| HhH-GPD family protein [Haloterrigena thermotolerans DSM 11522]
gi|445656907|gb|ELZ09739.1| HhH-GPD family protein [Haloterrigena thermotolerans DSM 11522]
Length = 307
Score = 64.3 bits (155), Expect = 3e-07, Method: Composition-based stats.
Identities = 61/223 (27%), Positives = 95/223 (42%), Gaps = 35/223 (15%)
Query: 396 DATSKSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIAN 455
DA S S + R +E ++ ANG KD E++ A+ + +A
Sbjct: 91 DANSASDARRERREGLDN-----------ANGEAVSGQPRAKDIDLAESLAAAEQSTLAE 139
Query: 456 TIKERGMNNMLAGRIKDFLNRLVRDHGSVDL--EWLRDVPPDKAKEYLLSFRGLGLKSVE 513
TI G+ N + I D ++ + GS +++D PP + +E LL RG+G K+ +
Sbjct: 140 TISGAGLYNQKSETIIDTAEWVLEEFGSAAAFDAFVKDEPPAEVRETLLGVRGVGPKTAD 199
Query: 514 CVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRL 572
CV L FPVDT+V RI R+G P E+++ E +++ +
Sbjct: 200 CVLLFAGGRGGVFPVDTHVHRIYRRMGIAPPDADHEAVR----------EVLERDVPAAK 249
Query: 573 CKLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGEC 611
C H I FG+ +C P C +ACPM C
Sbjct: 250 CGFG-------HTATIQFGREYCRARTPACLEDPDACPMADRC 285
>gi|18312246|ref|NP_558913.1| DNA-(apurinic or apyrimidinic site) lyase (endonuclease III, PaNth)
[Pyrobaculum aerophilum str. IM2]
gi|7141250|gb|AAF37269.1|AF222334_1 putative DNA glycosylase [Pyrobaculum aerophilum]
gi|18159688|gb|AAL63095.1| DNA-(apurinic or apyrimidinic site) lyase (endonuclease III, PaNth)
[Pyrobaculum aerophilum str. IM2]
Length = 223
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 23/168 (13%)
Query: 450 VNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGL 509
+ + IK GM A +K + + E L ++ P++A+E LLS G+G
Sbjct: 73 IEALEELIKPAGMYRQRARNLKALAEAFI--QLGLTPERLVEMGPERARELLLSLPGVGK 130
Query: 510 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 569
K+ + V L+ L AFPVDT++ RIA R G + E Y + I ++
Sbjct: 131 KTADVV-LVNLGLPAFPVDTHITRIAKRWG--------------IGEKY---DEISRWFM 172
Query: 570 PRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASA 617
RL + + H ++I FG+ C P C CP+ +C F SA
Sbjct: 173 ERL---PRDKYLDFHLKLIQFGRDVCRARNPKCGQCPIGAKCPSFKSA 217
>gi|386002355|ref|YP_005920654.1| hypothetical protein Mhar_1672 [Methanosaeta harundinacea 6Ac]
gi|357210411|gb|AET65031.1| hypothetical protein Mhar_1672 [Methanosaeta harundinacea 6Ac]
Length = 133
Score = 63.9 bits (154), Expect = 4e-07, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 17/128 (13%)
Query: 484 VDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPL 543
+DLE+LR ++A+++L+S G+G K+ V L PVDT+V R++ RLG+VP
Sbjct: 13 IDLEFLRGADAEEARQFLVSLPGVGPKTAAVVLLFAFRMPLLPVDTHVNRLSRRLGFVPA 72
Query: 544 QPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCN 603
E + L E+ P +KY H +I G+ C P+C
Sbjct: 73 GASIEEAERILEEITPR----EKYC-------------SFHVNLIRHGRAVCRARSPSCG 115
Query: 604 ACPMRGEC 611
AC + C
Sbjct: 116 ACVLAEVC 123
>gi|367471322|ref|ZP_09470967.1| Endonuclease III [Patulibacter sp. I11]
gi|365813601|gb|EHN08854.1| Endonuclease III [Patulibacter sp. I11]
Length = 248
Score = 63.9 bits (154), Expect = 4e-07, Method: Composition-based stats.
Identities = 52/189 (27%), Positives = 77/189 (40%), Gaps = 38/189 (20%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVR---------------DHGSVD 485
DWE V A V +I I+ G++ + + RI L+ + D +D
Sbjct: 75 DWELVARAPVEEIEAAIRPGGISKVKSVRIAAILDAIAERSGPTARALGLDPAPDASPLD 134
Query: 486 LEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLG-WVPLQ 544
L W+ P +++L G+G K+ CV L PVDT+V R+ RL + P
Sbjct: 135 LTWMEAAPVAAGRDFLCELPGVGRKTAACVLLFAYGLHDVPVDTHVQRVGTRLALFRPGA 194
Query: 545 PLPESLQLHLLELYPVLESIQKYLW--PRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC 602
PL E LH + LW P L ELH ++ G+ C +P C
Sbjct: 195 PLDE---LH-----------DEMLWITPEGAGL------ELHVNLLRHGRRTCHARRPAC 234
Query: 603 NACPMRGEC 611
+ C +R C
Sbjct: 235 SECALRRMC 243
>gi|239618511|ref|YP_002941833.1| endonuclease III [Kosmotoga olearia TBF 19.5.1]
gi|239507342|gb|ACR80829.1| endonuclease III [Kosmotoga olearia TBF 19.5.1]
Length = 210
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDH-GSVDLEWLRDVPPDKAKE 499
D A+ A + N IK GM A RI + +V + G V PD +E
Sbjct: 57 DVFAIAKAKPEDLYNLIKAAGMYRQKAERIVEISKIIVETYNGKV---------PDTLEE 107
Query: 500 YLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
L G+G K+ V ++ A VDT+V RI+ RLGW+ + PE + L ++ P
Sbjct: 108 -LTKLPGVGRKTANIVLNVSFGKAALAVDTHVHRISNRLGWIKTKQ-PEQSEFELQKILP 165
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFA 615
+ LW L+ M+ FG+ C P CN CP+ CR+F+
Sbjct: 166 ------EELWG-----------PLNGSMVEFGRRVCKPVNPQCNECPINSCCRYFS 204
>gi|385773949|ref|YP_005646516.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
HVE10/4]
gi|323478064|gb|ADX83302.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
HVE10/4]
Length = 233
Score = 63.5 bits (153), Expect = 5e-07, Method: Composition-based stats.
Identities = 54/212 (25%), Positives = 91/212 (42%), Gaps = 29/212 (13%)
Query: 411 QNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRI 470
QN D +L+ +E PE D AD++ I N +K G+ A R+
Sbjct: 46 QNSTDKSALKAYLELEKKVGVTPEKLSD---------ADLSDIENALKISGLYKTKAKRL 96
Query: 471 KDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTN 530
K ++ + + L P +E LL F G+G K+ + V L + FP+DT+
Sbjct: 97 KIISKIILEKYNGLIDNLLNSSNP---REELLKFEGIGEKTADVVLLTCRGYEVFPIDTH 153
Query: 531 VGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITF 590
+ R++ RLG VP+ E + L EL+ + +Q +L +I
Sbjct: 154 ITRVSKRLGIVPMNAKYELISSTLKELFSAYDLLQLHL-----------------LLIAH 196
Query: 591 GKVFCTKSKPNCNACPMRGECRHFASAFASSR 622
G+ C KP CN+C ++ C +++ +R
Sbjct: 197 GRQTCKARKPLCNSCIIKECCEYYSHRDGEAR 228
>gi|448726638|ref|ZP_21709032.1| HhH-GPD family protein [Halococcus morrhuae DSM 1307]
gi|445793968|gb|EMA44532.1| HhH-GPD family protein [Halococcus morrhuae DSM 1307]
Length = 267
Score = 63.5 bits (153), Expect = 5e-07, Method: Composition-based stats.
Identities = 52/182 (28%), Positives = 78/182 (42%), Gaps = 24/182 (13%)
Query: 453 IANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDL--EWLRDVPPDKAKEYLLSFRGLGLK 510
+A TI+ G+ N + + R+V ++GS E++ D P +E LL F G+G K
Sbjct: 100 LAETIEPAGLYNQKSETMIAIAERVVDEYGSAAAFDEFVTDEEPATVRETLLDFSGVGPK 159
Query: 511 SVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 569
+ +CV L + FPVDT+V RI RLG P E ++ E ++ +
Sbjct: 160 TADCVLLFSGGRAGVFPVDTHVHRIYRRLGIAPADADHEKVR----------EVLEAQVP 209
Query: 570 PRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGECRHFASAFASSRLAL 625
C H I FG+ +CT P C +ACPM C A+ +
Sbjct: 210 AEKCGFG-------HTATIQFGREYCTARSPACLDDPDACPMGDLCEQVGVYPATDEVVD 262
Query: 626 PG 627
P
Sbjct: 263 PA 264
>gi|448352659|ref|ZP_21541440.1| HhH-GPD family protein [Natrialba hulunbeirensis JCM 10989]
gi|445641938|gb|ELY95009.1| HhH-GPD family protein [Natrialba hulunbeirensis JCM 10989]
Length = 278
Score = 63.5 bits (153), Expect = 5e-07, Method: Composition-based stats.
Identities = 52/170 (30%), Positives = 74/170 (43%), Gaps = 24/170 (14%)
Query: 451 NKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDL--EWLRDVPPDKAKEYLLSFRGLG 508
+++A TI G+ N +G + D + + GS ++ D PD +E LL RG+G
Sbjct: 108 SQLAETISSAGLYNQKSGMLIDAAEWVCDEFGSAAEFDRFVTDEAPDTVRETLLDVRGVG 167
Query: 509 LKSVECVRLLT-LHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 567
K+ +CV L + FPVDT+V RI R+G P + E ++ L P +
Sbjct: 168 PKTADCVLLFAGGRNGVFPVDTHVHRIYRRMGIAPPEADHEEVRAVLEAEVPAAK----- 222
Query: 568 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGECRH 613
C H I FG+ FCT KP C ACPM C
Sbjct: 223 -----CGFG-------HTATIQFGREFCTARKPACLEDPEACPMADLCEQ 260
>gi|429858184|gb|ELA33014.1| base excision dna repair protein [Colletotrichum gloeosporioides
Nara gc5]
Length = 309
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 12/138 (8%)
Query: 417 DSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNR 476
D+L R + + K S+D EA++C ++ + + + I LN+
Sbjct: 157 DALVRTILSQNTSDTNSTRAKRSMDDEAIKCGGLSAVKSKV------------IISILNQ 204
Query: 477 LVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAV 536
+ +G L+ L + A + L+SF+G+G K+ CV L L +F VDT+V RI
Sbjct: 205 VKEKYGKYSLDHLFSASNEDAMQELISFQGVGPKTASCVLLFCLQRESFAVDTHVWRITG 264
Query: 537 RLGWVPLQPLPESLQLHL 554
LGW P + HL
Sbjct: 265 LLGWRPKSASRDETHAHL 282
>gi|388852390|emb|CCF54005.1| uncharacterized protein [Ustilago hordei]
Length = 635
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 58/119 (48%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
+WEA+ A +++ I+ G+ N A IK L + + HG + L+ L + D+ +
Sbjct: 193 NWEAIHSAPESELVEAIRCGGLANNKARTIKGILAQTMERHGKLSLDHLHNATDDEIMQE 252
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
L+ F G+G K CV + + VDT+V R+ L WVP + + HL E P
Sbjct: 253 LVRFNGVGPKVASCVLAFCIGRQSMAVDTHVFRLCKALRWVPEKANRDQTYYHLHERVP 311
>gi|448737131|ref|ZP_21719183.1| HhH-GPD family protein [Halococcus thailandensis JCM 13552]
gi|445804344|gb|EMA54601.1| HhH-GPD family protein [Halococcus thailandensis JCM 13552]
Length = 267
Score = 63.5 bits (153), Expect = 6e-07, Method: Composition-based stats.
Identities = 51/181 (28%), Positives = 78/181 (43%), Gaps = 24/181 (13%)
Query: 453 IANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDL--EWLRDVPPDKAKEYLLSFRGLGLK 510
+A TI+ G+ N + + R+V ++GS E++ + P +E LL F G+G K
Sbjct: 100 LAETIESAGLYNQKSETMIAIAERVVDEYGSAAAFDEFVTEEEPATVRETLLDFSGVGPK 159
Query: 511 SVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 569
+ +CV L + FPVDT+V RI RLG P E ++ E ++ +
Sbjct: 160 TADCVLLFSGGRAGVFPVDTHVHRIYRRLGIAPADADHEDVR----------EVLEAQVP 209
Query: 570 PRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGECRHFASAFASSRLAL 625
C H I FG+ +CT P C +ACPM C A+ +
Sbjct: 210 AEKCGFG-------HTATIQFGREYCTARSPACLDDPDACPMGDRCEQVGVYPATDEVVD 262
Query: 626 P 626
P
Sbjct: 263 P 263
>gi|289580004|ref|YP_003478470.1| HhH-GPD family protein [Natrialba magadii ATCC 43099]
gi|448281243|ref|ZP_21472550.1| HhH-GPD family protein [Natrialba magadii ATCC 43099]
gi|289529557|gb|ADD03908.1| HhH-GPD family protein [Natrialba magadii ATCC 43099]
gi|445579173|gb|ELY33569.1| HhH-GPD family protein [Natrialba magadii ATCC 43099]
Length = 278
Score = 63.5 bits (153), Expect = 6e-07, Method: Composition-based stats.
Identities = 52/170 (30%), Positives = 73/170 (42%), Gaps = 24/170 (14%)
Query: 451 NKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDL--EWLRDVPPDKAKEYLLSFRGLG 508
+++A TI G+ N + + D + + GS D ++ D PD +E LL RG+G
Sbjct: 108 SQLAETISSAGLYNQKSAMLIDAAEWVCDEFGSADEFDRFVTDETPDTVRETLLDVRGVG 167
Query: 509 LKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 567
K+ +CV L FPVDT+V RI R+G P + E ++ L P +
Sbjct: 168 PKTADCVLLFAGGRGGVFPVDTHVHRIYRRMGIAPPEADHEEVRTVLEAEVPAAK----- 222
Query: 568 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGECRH 613
C H I FG+ FCT KP C ACPM C
Sbjct: 223 -----CGFG-------HTATIQFGREFCTARKPACLEDPEACPMADICEQ 260
>gi|335430781|ref|ZP_08557667.1| endonuclease III [Haloplasma contractile SSD-17B]
gi|334887321|gb|EGM25653.1| endonuclease III [Haloplasma contractile SSD-17B]
Length = 210
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 18/121 (14%)
Query: 494 PDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 553
PD +E L G+G K+ V + AF VDT+V R++ RLG P ++
Sbjct: 105 PD-TREELEKLPGVGRKTANVVLSVCFDQPAFAVDTHVARVSKRLGIANENDTPLKIEKK 163
Query: 554 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
L++++P + LH+QMI FG+ CT KPNC+ C ++ C
Sbjct: 164 LIDVFP-----------------EEKWCALHHQMIFFGRYHCTARKPNCDECKLKDICTE 206
Query: 614 F 614
F
Sbjct: 207 F 207
>gi|385802541|ref|YP_005838941.1| DNA-(apurinic or apyrimidinic site) lyase [Haloquadratum walsbyi
C23]
gi|339728033|emb|CCC39154.1| endonuclease III [Haloquadratum walsbyi C23]
Length = 223
Score = 63.2 bits (152), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 73/174 (41%), Gaps = 20/174 (11%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGS-VDLEWLRDVPPDKAKE 499
D+ A+ A ++A+ I+ G+ N A RI+ L + ++ G L +L + + A+
Sbjct: 58 DYRAMETAPHEELADVIEVAGLKNQKAARIQRALTAIRKETGGEYTLMFLANQSTEAAQS 117
Query: 500 YLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
+L +G+G K+ V F VDT+V R+A R G + + L EL P
Sbjct: 118 WLTDIKGVGPKTASVVLNFHFEKPTFAVDTHVERLAKRFGLLDSTASNKRAHTELNELVP 177
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC--NACPMRGEC 611
Y LH MIT G+ +CT PNC + C C
Sbjct: 178 -----------------DDLKYSLHVLMITHGREYCTAQSPNCANSVCQTYCSC 214
>gi|395325971|gb|EJF58386.1| DNA glycosylase [Dichomitus squalens LYAD-421 SS1]
Length = 353
Score = 63.2 bits (152), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 79/198 (39%), Gaps = 52/198 (26%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWL-RDVPPD---- 495
+++A+ A +++ IK G+ N A I+ L + HG L+ L R V D
Sbjct: 137 NFQAIAEASKDQVVEAIKTGGLANKKAAVIQKILREVYDRHGEYSLQHLARVVQSDVDVN 196
Query: 496 ------------------KAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVR 537
+A + L+S+ G+G K+ CV L L +FPVDT+V R++
Sbjct: 197 SKAKAEGSSQGRAAVSDEEAMQELVSYDGVGPKTASCVLLFCLGRSSFPVDTHVFRLSRL 256
Query: 538 LGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTK 597
LGWVP + + Q HL K+ Y LH M+ G+
Sbjct: 257 LGWVPARADRVTAQAHL-----------------DLKVPDHLKYGLHVLMVGHGR----- 294
Query: 598 SKPNCNACPM----RGEC 611
C C +GEC
Sbjct: 295 ---RCKGCKSTSSGKGEC 309
>gi|148642332|ref|YP_001272845.1| endonuclease III [Methanobrevibacter smithii ATCC 35061]
gi|148551349|gb|ABQ86477.1| endonuclease III [Methanobrevibacter smithii ATCC 35061]
Length = 210
Score = 63.2 bits (152), Expect = 7e-07, Method: Composition-based stats.
Identities = 48/166 (28%), Positives = 72/166 (43%), Gaps = 27/166 (16%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
A + + I+ G + A RIK+ L+ +G PD KE L+ G+
Sbjct: 71 APTDDVEELIRCSGFYRVKAARIKEVSRILIDQYGGE--------VPDNLKE-LVELPGV 121
Query: 508 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 567
G K+ CV + A PVDT+V RI+ R+G V + PE ++ L ++ P K
Sbjct: 122 GRKTANCVLVYAFELPAIPVDTHVHRISNRIGLVNTKT-PEQTEVELAKIAP------KE 174
Query: 568 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
LW +L L M+ FG+ C P C CP+ C +
Sbjct: 175 LWIKLNDL-----------MVQFGQTICKPMSPQCEMCPISDICDY 209
>gi|448337176|ref|ZP_21526258.1| HhH-GPD family protein [Natrinema pallidum DSM 3751]
gi|445626522|gb|ELY79865.1| HhH-GPD family protein [Natrinema pallidum DSM 3751]
Length = 284
Score = 63.2 bits (152), Expect = 7e-07, Method: Composition-based stats.
Identities = 56/203 (27%), Positives = 88/203 (43%), Gaps = 25/203 (12%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDL--EWLRDVPPDKAKEY 500
E++ A+ +A TI G+ N + + D ++ + GS +++D P +E
Sbjct: 100 ESLASAERATLAETISGAGLYNQKSETLIDTAEWVLEEFGSASAFDTFVKDEEPSVVRET 159
Query: 501 LLSFRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
LLS RG+G K+ +CV L FPVDT+V RI R+G P E+++
Sbjct: 160 LLSVRGVGPKTADCVLLFAGGRGGVFPVDTHVHRIYRRMGIAPPDADHEAVR-------- 211
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGECRHFA 615
E +++ + C H I FG+ +C KP C +ACPM C
Sbjct: 212 --EVLERDVPAAKCGFG-------HTATIQFGREYCRARKPACLEDPDACPMADVCEQVG 262
Query: 616 SAFASSRLALPGPEEKAIVSANE 638
A+ + P E A AN+
Sbjct: 263 VFPATGEVVDPA-ETSAATEAND 284
>gi|392561532|gb|EIW54713.1| DNA glycosylase [Trametes versicolor FP-101664 SS1]
Length = 307
Score = 63.2 bits (152), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 63/128 (49%), Gaps = 14/128 (10%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLR--DVPP---- 494
++ A+ A + IK G+ N AG I+ L + R HG+ L+ L DV
Sbjct: 103 NFAAIADAKTADVVEAIKTGGLANKKAGVIQKILAEVHRRHGAYSLQHLAGADVKGKGKA 162
Query: 495 --------DKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPL 546
+ A + L+S+ G+G K+ CV L L +FPVDT+V R++ LGWVP +
Sbjct: 163 AGGAPASDEAAMQELVSYDGVGPKTASCVLLFCLGRSSFPVDTHVFRLSRLLGWVPQKAD 222
Query: 547 PESLQLHL 554
+ Q HL
Sbjct: 223 RVTAQAHL 230
>gi|448313759|ref|ZP_21503471.1| HhH-GPD family protein [Natronolimnobius innermongolicus JCM 12255]
gi|445597069|gb|ELY51147.1| HhH-GPD family protein [Natronolimnobius innermongolicus JCM 12255]
Length = 286
Score = 63.2 bits (152), Expect = 7e-07, Method: Composition-based stats.
Identities = 52/173 (30%), Positives = 74/173 (42%), Gaps = 24/173 (13%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDL--EWLRDVPPDKAKEYLLSFR 505
A+ + +A TI G+ N + I ++ + GS E+++D P+ +E LL R
Sbjct: 97 AERSALAETISSAGLYNQKSEVIIATAEWVIEEFGSAVAFDEYVKDEAPETVRETLLDVR 156
Query: 506 GLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESI 564
G+G K+ +CV L FPVDT+V RI RLG P E ++ L P +
Sbjct: 157 GVGPKTADCVLLFAGGRGGVFPVDTHVHRIYRRLGIAPADADHEDVRAVLEREVPAAK-- 214
Query: 565 QKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGECRH 613
C H I FG+ +CT KP C ACPM C
Sbjct: 215 --------CGFG-------HTATIQFGREYCTARKPACLEDPEACPMADRCEQ 252
>gi|124365544|gb|ABN09778.1| hypothetical protein MtrDRAFT_AC152184g6v2 [Medicago truncatula]
Length = 52
Score = 63.2 bits (152), Expect = 7e-07, Method: Composition-based stats.
Identities = 27/35 (77%), Positives = 32/35 (91%), Gaps = 2/35 (5%)
Query: 914 QHCFWRGYVCVRGFDQKSRAPRPLMARLHFPASKL 948
Q+C GYVCVRGF++K+RAPRPLMARLHFPA+KL
Sbjct: 3 QYC--GGYVCVRGFERKTRAPRPLMARLHFPANKL 35
>gi|110667125|ref|YP_656936.1| endonuclease III; DNA-(apurinic or apyrimidinic site) lyase
[Haloquadratum walsbyi DSM 16790]
gi|109624872|emb|CAJ51281.1| endonuclease III [Haloquadratum walsbyi DSM 16790]
Length = 223
Score = 63.2 bits (152), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 73/174 (41%), Gaps = 20/174 (11%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGS-VDLEWLRDVPPDKAKE 499
D+ A+ A ++A+ I+ G+ N A RI+ L + ++ G L +L + + A+
Sbjct: 58 DYRAMETAPHEELADIIEVAGLKNQKAARIQRALTAIRKETGGEYTLMFLANQSTEAAQS 117
Query: 500 YLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
+L +G+G K+ V F VDT+V R+A R G + + L EL P
Sbjct: 118 WLTDIKGVGPKTASVVLNFHFEKPTFAVDTHVERLAKRFGLLDSTASNKRAHTELNELVP 177
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC--NACPMRGEC 611
Y LH MIT G+ +CT PNC + C C
Sbjct: 178 -----------------DDLKYSLHVLMITHGREYCTAQSPNCANSVCQTYCSC 214
>gi|448400249|ref|ZP_21571316.1| HhH-GPD family protein [Haloterrigena limicola JCM 13563]
gi|445667789|gb|ELZ20429.1| HhH-GPD family protein [Haloterrigena limicola JCM 13563]
Length = 270
Score = 62.8 bits (151), Expect = 8e-07, Method: Composition-based stats.
Identities = 55/182 (30%), Positives = 82/182 (45%), Gaps = 25/182 (13%)
Query: 438 DSLDW-EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDL--EWLRDVPP 494
D LD E++ A+ + +A TI G+ N + I D ++ + GS +++D P
Sbjct: 86 DDLDLAESLAHAEQSTLAETISSAGLYNQKSETIIDTAEWVLEEFGSAAAFDTFVKDEAP 145
Query: 495 DKAKEYLLSFRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLH 553
+E LL RG+G K+ +CV L FPVDT+V RI RLG P E+++
Sbjct: 146 AAVRETLLEVRGVGPKTADCVLLFAGGRGGVFPVDTHVHRIYRRLGIAPPDADHETVR-- 203
Query: 554 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRG 609
E +++ + C H I FG+ +CT KP C ACPM
Sbjct: 204 --------EILERDVPAAKCGFG-------HTATIQFGREYCTARKPACLDDPEACPMAD 248
Query: 610 EC 611
C
Sbjct: 249 LC 250
>gi|171184578|ref|YP_001793497.1| DNA-(apurinic or apyrimidinic site) lyase [Pyrobaculum neutrophilum
V24Sta]
gi|170933790|gb|ACB39051.1| DNA-(apurinic or apyrimidinic site) lyase [Pyrobaculum neutrophilum
V24Sta]
Length = 222
Score = 62.8 bits (151), Expect = 9e-07, Method: Composition-based stats.
Identities = 52/179 (29%), Positives = 83/179 (46%), Gaps = 23/179 (12%)
Query: 439 SLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAK 498
S+ EAV ++A IK GM + A +K ++ HG + + L ++ ++A+
Sbjct: 61 SITPEAVAKLAEEELAALIKPAGMYRIRARALKALAEAFLK-HG-ITPQRLLEMGAERAR 118
Query: 499 EYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY 558
+L+S G+G K+ + V L+ + AFPVDT++ RIA R G +
Sbjct: 119 AFLMSLPGVGKKTADVV-LVNIGLPAFPVDTHITRIARRWG-----------------IG 160
Query: 559 PVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASA 617
+ I ++ RL R L E H ++I FG+ C P C CP+ C F SA
Sbjct: 161 RSYDEISRWFMDRLPP--ARYL-EFHLKLIQFGRDVCRARSPRCGVCPIGERCPSFKSA 216
>gi|148269671|ref|YP_001244131.1| HhH-GPD family protein [Thermotoga petrophila RKU-1]
gi|281411619|ref|YP_003345698.1| HhH-GPD family protein [Thermotoga naphthophila RKU-10]
gi|147735215|gb|ABQ46555.1| DNA-3-methyladenine glycosylase III [Thermotoga petrophila RKU-1]
gi|281372722|gb|ADA66284.1| HhH-GPD family protein [Thermotoga naphthophila RKU-10]
Length = 220
Score = 62.8 bits (151), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 77/164 (46%), Gaps = 19/164 (11%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
K+A I+ G N+ R+K L + ++++ + +L LRD+P +E LL +G+G ++
Sbjct: 70 KVAELIRPAGFFNIKTKRLKALL-KFLKEY-NYNLSRLRDLPTHILRERLLKIKGIGKET 127
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
+ + L L F VD+ R+ R+ + L E +L + YP
Sbjct: 128 ADAILLYALEKPIFVVDSYTRRLLKRIFNIELNDYDEVQRLFMTH-YPE----------- 175
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFA 615
D R E H ++ K FC+K+ P C CP++ EC H +
Sbjct: 176 ----DVRLYQEFHGLIVEHAKKFCSKT-PKCGVCPLKKECCHVS 214
>gi|119872647|ref|YP_930654.1| HhH-GPD family protein [Pyrobaculum islandicum DSM 4184]
gi|119674055|gb|ABL88311.1| HhH-GPD family protein [Pyrobaculum islandicum DSM 4184]
Length = 222
Score = 62.8 bits (151), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 23/167 (13%)
Query: 451 NKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLK 510
++A IK GM A +K+ ++ + + L ++ ++A+ +LL+ G+G K
Sbjct: 73 GELAELIKPAGMYRQRARVLKNLAETFLKY--DITPQRLLEMGAERARAFLLTLPGVGKK 130
Query: 511 SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP 570
+ + + L+ L AFPVDT++ RIA R G + + I ++
Sbjct: 131 TADVI-LVNLGLPAFPVDTHITRIARRWG-----------------IGKSYDEISRWFIE 172
Query: 571 RLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASA 617
RL Q ELH ++I FG+ C P C+ CP+ C + SA
Sbjct: 173 RL---PQHKYLELHLKLIQFGREICKARNPKCDVCPIGQRCPSYKSA 216
>gi|448346319|ref|ZP_21535205.1| HhH-GPD family protein [Natrinema altunense JCM 12890]
gi|445632908|gb|ELY86114.1| HhH-GPD family protein [Natrinema altunense JCM 12890]
Length = 310
Score = 62.8 bits (151), Expect = 9e-07, Method: Composition-based stats.
Identities = 55/203 (27%), Positives = 89/203 (43%), Gaps = 25/203 (12%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDL--EWLRDVPPDKAKEY 500
E++ A+ + +A TI G+ N + + D ++ + GS +++D P +E
Sbjct: 126 ESLASAEQSTLAETISGAGLYNQKSETLIDTAEWVLEEFGSAPAFDAFVKDEGPSIVRET 185
Query: 501 LLSFRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
LLS RG+G K+ +CV L FPVDT+V RI R+G P E+++
Sbjct: 186 LLSVRGVGPKTADCVLLFAGGRGGVFPVDTHVHRIYRRMGIAPPDADHEAVR-------- 237
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGECRHFA 615
E +++ + C H I FG+ +C KP C +ACPM C
Sbjct: 238 --EVLERDVPAAKCGFG-------HTATIQFGREYCRARKPACLEDPDACPMADVCEQVG 288
Query: 616 SAFASSRLALPGPEEKAIVSANE 638
A+ + P E A A++
Sbjct: 289 VFPATGEVVDPA-ETSAATEADD 310
>gi|222444488|ref|ZP_03607003.1| hypothetical protein METSMIALI_00099 [Methanobrevibacter smithii
DSM 2375]
gi|261350964|ref|ZP_05976381.1| endonuclease III [Methanobrevibacter smithii DSM 2374]
gi|222434053|gb|EEE41218.1| endonuclease III [Methanobrevibacter smithii DSM 2375]
gi|288860304|gb|EFC92602.1| endonuclease III [Methanobrevibacter smithii DSM 2374]
Length = 208
Score = 62.8 bits (151), Expect = 9e-07, Method: Composition-based stats.
Identities = 48/166 (28%), Positives = 72/166 (43%), Gaps = 27/166 (16%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
A + + I+ G + A RIK+ L+ +G PD KE L+ G+
Sbjct: 69 APTDDVEELIRCSGFYRVKAARIKEVSRILIDQYGGE--------VPDNLKE-LVELPGV 119
Query: 508 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 567
G K+ CV + A PVDT+V RI+ R+G V + PE ++ L ++ P K
Sbjct: 120 GRKTANCVLVYAFELPAIPVDTHVHRISNRIGLVNTKT-PEQTEVELAKIAP------KE 172
Query: 568 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
LW +L L M+ FG+ C P C CP+ C +
Sbjct: 173 LWIKLNDL-----------MVQFGQTICKPMSPQCEMCPISDICDY 207
>gi|433590937|ref|YP_007280433.1| putative endoIII-related endonuclease [Natrinema pellirubrum DSM
15624]
gi|448334470|ref|ZP_21523645.1| HhH-GPD family protein [Natrinema pellirubrum DSM 15624]
gi|433305717|gb|AGB31529.1| putative endoIII-related endonuclease [Natrinema pellirubrum DSM
15624]
gi|445619802|gb|ELY73319.1| HhH-GPD family protein [Natrinema pellirubrum DSM 15624]
Length = 272
Score = 62.8 bits (151), Expect = 1e-06, Method: Composition-based stats.
Identities = 50/176 (28%), Positives = 80/176 (45%), Gaps = 24/176 (13%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDL--EWLRDVPPDKAKEY 500
E++ A+ + +A TI G+ N + I D ++ + GS +++D PP + +E
Sbjct: 92 ESLAAAEQSTLAETISGAGLYNQKSETIIDTAEWVLEEFGSAAAFDAFVKDEPPAEVRET 151
Query: 501 LLSFRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
LL RG+G K+ +CV L FPVDT+V RI R+G P E+++
Sbjct: 152 LLEVRGVGPKTADCVLLFAGGRGGVFPVDTHVHRIYRRMGIAPPDADHEAVR-------- 203
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGEC 611
E +++ + C H I FG+ +C P C +ACPM C
Sbjct: 204 --EVLERDVPAAKCGFG-------HTATIQFGREYCRARTPACLEDPDACPMADRC 250
>gi|448702713|ref|ZP_21700146.1| HhH-GPD family protein [Halobiforma lacisalsi AJ5]
gi|445777274|gb|EMA28244.1| HhH-GPD family protein [Halobiforma lacisalsi AJ5]
Length = 268
Score = 62.8 bits (151), Expect = 1e-06, Method: Composition-based stats.
Identities = 52/176 (29%), Positives = 78/176 (44%), Gaps = 24/176 (13%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDL--EWLRDVPPDKAKEY 500
E++ A+ + +A TI G+ N + I + ++ + GS +++D P +E
Sbjct: 92 ESLAGAEQSALAETISSAGLYNQKSEIIIETAEWVLEEFGSAAAFDAFVKDENPGTVRET 151
Query: 501 LLSFRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
LL RG+G K+ +CV L FPVDT+V RI RLG P E ++ L + P
Sbjct: 152 LLEVRGVGPKTADCVLLFAGGRTGVFPVDTHVHRIYRRLGIAPADADHEEVRAVLEDEVP 211
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGEC 611
+ C H I FG+ +CT KP C +ACPM C
Sbjct: 212 AAK----------CGFG-------HTATIQFGREYCTARKPACLEDPDACPMGDLC 250
>gi|448322514|ref|ZP_21511984.1| HhH-GPD family protein [Natronococcus amylolyticus DSM 10524]
gi|445601272|gb|ELY55261.1| HhH-GPD family protein [Natronococcus amylolyticus DSM 10524]
Length = 270
Score = 62.8 bits (151), Expect = 1e-06, Method: Composition-based stats.
Identities = 53/178 (29%), Positives = 79/178 (44%), Gaps = 28/178 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNN----MLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAK 498
E++ A+ +++A TI G+ N M+ G ++ L G D ++R+ P+ +
Sbjct: 92 ESLADAEQSELAETISSAGLYNQKSAMIVGAAEEILEEFDSAAGFDD--FVREAEPETVR 149
Query: 499 EYLLSFRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEL 557
E LL G+G K+ +CV L FPVDT+V RI RLG P E+++ L
Sbjct: 150 ERLLEIHGVGPKTADCVLLFAGGRGGVFPVDTHVHRIYRRLGIAPADADHEAVRAVLERD 209
Query: 558 YPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGEC 611
P + C H I FG+ +CT KP C +ACPM C
Sbjct: 210 IPAAK----------CGFG-------HTASIQFGREYCTARKPACLEDPDACPMADVC 250
>gi|383318935|ref|YP_005379776.1| EndoIII-related endonuclease [Methanocella conradii HZ254]
gi|379320305|gb|AFC99257.1| putative EndoIII-related endonuclease [Methanocella conradii HZ254]
Length = 291
Score = 62.8 bits (151), Expect = 1e-06, Method: Composition-based stats.
Identities = 54/199 (27%), Positives = 85/199 (42%), Gaps = 33/199 (16%)
Query: 417 DSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERG---MNNMLAGRIKDF 473
DS RR R + +D + CAD ++ I+ G + M+
Sbjct: 110 DSARRTFH-------RLQRRYKGIDVHKMACADKRELEELIRFSGPYKASYMIE------ 156
Query: 474 LNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGR 533
+R + + LEW+R P D+A+ LLS G+G K+ +CV L +L H PVDT++ R
Sbjct: 157 CSRQIEERWGGSLEWMRRAPTDEARRALLSLHGVGPKTADCVLLFSLGHSVVPVDTHICR 216
Query: 534 IAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYL-WPRLCKLDQRTLYELHYQMITFGK 592
++ RLG L S+ V E +++ L P + H +I G+
Sbjct: 217 VSQRLG------LSMSMGDSEAAKRRVKEDLERGLKMPGMA----------HLLIINLGR 260
Query: 593 VFCTKSKPNCNACPMRGEC 611
FC P + CP+ C
Sbjct: 261 DFCKALAPLHHICPVEELC 279
>gi|156041124|ref|XP_001587548.1| hypothetical protein SS1G_11541 [Sclerotinia sclerotiorum 1980]
gi|154695924|gb|EDN95662.1| hypothetical protein SS1G_11541 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 347
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 16/124 (12%)
Query: 430 KERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFL------NRLVRDHGS 483
+ +P +DWEAVR A + K+ IK GM N+ + K L N + R G
Sbjct: 203 RRKPGTGPGIVDWEAVRLAPLEKLYEAIKTEGMGNVKSRSCKAILDMVHEENVIRRQRGK 262
Query: 484 V----------DLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGR 533
V LE +R + D+A + ++F G+G K+ C+ + + H AF VDT+V +
Sbjct: 263 VATNSRGIDLLSLEHMRSLSKDEAFDKFITFPGVGPKTAACIISICMQHNAFAVDTHVYQ 322
Query: 534 IAVR 537
I+ R
Sbjct: 323 ISDR 326
>gi|448391644|ref|ZP_21566739.1| HhH-GPD family protein [Haloterrigena salina JCM 13891]
gi|445665056|gb|ELZ17734.1| HhH-GPD family protein [Haloterrigena salina JCM 13891]
Length = 274
Score = 62.8 bits (151), Expect = 1e-06, Method: Composition-based stats.
Identities = 53/197 (26%), Positives = 85/197 (43%), Gaps = 24/197 (12%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDL--EWLRDVPPDKAKEY 500
E++ A+ +++A TI G+ N + + ++ + GS +++D P + ++
Sbjct: 90 ESLAAAERSRLAETISSAGLYNQKSEVLIRTAEWILEEFGSAAAFDAFVKDEEPAEVRDT 149
Query: 501 LLSFRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
LLS RG+G K+ +CV L FPVDT+V RI R+G P E ++ L P
Sbjct: 150 LLSVRGVGPKTADCVLLFAGGRGGVFPVDTHVHRIYRRMGIAPAAADHEDVRAVLEREVP 209
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGECRHFA 615
+ C H I FG+ +CT KP C +ACPM C
Sbjct: 210 AAK----------CGFG-------HTATIQFGREYCTARKPACLEDPDACPMADVCDQVG 252
Query: 616 SAFASSRLALPGPEEKA 632
A+ + P +A
Sbjct: 253 VYPATGEVVDPAEATEA 269
>gi|357501423|ref|XP_003621000.1| DNA glycosylase [Medicago truncatula]
gi|355496015|gb|AES77218.1| DNA glycosylase [Medicago truncatula]
Length = 50
Score = 62.4 bits (150), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/31 (80%), Positives = 29/31 (93%)
Query: 918 WRGYVCVRGFDQKSRAPRPLMARLHFPASKL 948
W YVCVRGF++K+RAPRPLMARLHFPA+KL
Sbjct: 3 WYRYVCVRGFERKTRAPRPLMARLHFPANKL 33
>gi|257053763|ref|YP_003131596.1| DNA-(apurinic or apyrimidinic site) lyase [Halorhabdus utahensis
DSM 12940]
gi|256692526|gb|ACV12863.1| DNA-(apurinic or apyrimidinic site) lyase [Halorhabdus utahensis
DSM 12940]
Length = 274
Score = 62.4 bits (150), Expect = 1e-06, Method: Composition-based stats.
Identities = 53/192 (27%), Positives = 86/192 (44%), Gaps = 24/192 (12%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDL--EWLRDVPPDKAKEY 500
+A+ A+ ++A TI G+ N + RI + R+ ++G D ++R+ P + +E
Sbjct: 95 DALADAEQAELAETISGAGLYNQKSARIIEIAQRIREEYGGEDDFDAFVREEPAEAVRET 154
Query: 501 LLSFRGLGLKSVECVRLLT-LHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
LL+ G+G K+ +CV L FPVDT+V RI RLG P E+++
Sbjct: 155 LLAMNGVGPKTADCVLLFAGGRDGVFPVDTHVHRIYRRLGIAPPGADHEAVR-------- 206
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGECRHFA 615
E ++K + C H I FG+ +C+ +P C ACP+ C
Sbjct: 207 --EVLEKKVPEGKCGFG-------HTASIQFGREYCSAREPACLDGPEACPLYDLCDRVG 257
Query: 616 SAFASSRLALPG 627
AS + P
Sbjct: 258 IEPASGDVVDPA 269
>gi|422327448|ref|ZP_16408475.1| endonuclease III [Erysipelotrichaceae bacterium 6_1_45]
gi|371663288|gb|EHO28478.1| endonuclease III [Erysipelotrichaceae bacterium 6_1_45]
Length = 215
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 71/165 (43%), Gaps = 26/165 (15%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
AD++ I + I+ G+ A I++ L LE V P+ KE L S G+
Sbjct: 64 ADIHDIEDKIRRIGLYRNKARSIQNLSRSL--------LESFNGVVPESMKE-LTSLAGV 114
Query: 508 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 567
G K+ VR + + VDT+V RI+ RLG +Q E ++ L +++
Sbjct: 115 GRKTANVVRSVCFDIPSIAVDTHVERISKRLGLAKVQDSVEVVEQKLKR------KLKRE 168
Query: 568 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
W R H+ I FG+ FCT P C CP + C+
Sbjct: 169 RWNRA-----------HHLFIFFGRYFCTARNPKCEECPFKEFCK 202
>gi|313901141|ref|ZP_07834629.1| endonuclease III [Clostridium sp. HGF2]
gi|373121433|ref|ZP_09535301.1| endonuclease III [Erysipelotrichaceae bacterium 21_3]
gi|312954099|gb|EFR35779.1| endonuclease III [Clostridium sp. HGF2]
gi|371665451|gb|EHO30616.1| endonuclease III [Erysipelotrichaceae bacterium 21_3]
Length = 215
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 71/165 (43%), Gaps = 26/165 (15%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
AD++ I + I+ G+ A I++ L LE V P+ KE L S G+
Sbjct: 64 ADIHDIEDKIRRIGLYRNKARSIQNLSRSL--------LESFNGVVPESMKE-LTSLAGV 114
Query: 508 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 567
G K+ VR + + VDT+V RI+ RLG +Q E ++ L +++
Sbjct: 115 GRKTANVVRSVCFDIPSIAVDTHVERISKRLGLAKVQDSVEVVEQKLKR------KLKRE 168
Query: 568 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
W R H+ I FG+ FCT P C CP + C+
Sbjct: 169 RWNRA-----------HHLFIFFGRYFCTARNPKCEECPFKEFCK 202
>gi|374327779|ref|YP_005085979.1| hypothetical protein P186_2339 [Pyrobaculum sp. 1860]
gi|356643048|gb|AET33727.1| hypothetical protein P186_2339 [Pyrobaculum sp. 1860]
Length = 224
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 23/179 (12%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
EA+ ++ I+ GM+ A +K + ++ + + L ++ P +A+ LL
Sbjct: 67 EALLALSTEELEELIRPAGMHRQRARNLKALADAFIKL--GITPQRLVEMGPGEARRLLL 124
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
S G+G K+ + V L+ L AFPVDT++ RIA R G + + +E+ P
Sbjct: 125 SLPGVGEKTADVV-LVNLGLPAFPVDTHITRIAKRWG---VGDRYGQISRWFMEMVPP-- 178
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASS 621
++YL E+H ++I FG+ C P C CP+ C + SA SS
Sbjct: 179 --ERYL-------------EIHLKLIQFGRYVCKARDPRCGVCPIGERCPSYRSAGRSS 222
>gi|170101314|ref|XP_001881874.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164643229|gb|EDR07482.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 308
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 75/176 (42%), Gaps = 32/176 (18%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWL-------RDVP 493
++ A+ A ++ + I+ G+ N A I++ L+ + HG L+ L R +
Sbjct: 134 NFVAIAQAPRERLVDAIRSGGLANKKAATIQNLLHSIRGKHGEYSLQHLAAAESSGRRMS 193
Query: 494 PDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 553
D+ + L+S+ G+G K+ CV L L +F VDT+V R++ LGWVP + Q H
Sbjct: 194 DDEIMKELISYDGVGPKTASCVLLFCLGRNSFAVDTHVFRLSKLLGWVPQKSDRVLAQAH 253
Query: 554 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRG 609
L P Y+LH MI G++ C C G
Sbjct: 254 LDIRVP-----------------DELKYDLHVLMIQHGRL--------CKGCKKTG 284
>gi|284165866|ref|YP_003404145.1| HhH-GPD family protein [Haloterrigena turkmenica DSM 5511]
gi|284015521|gb|ADB61472.1| HhH-GPD family protein [Haloterrigena turkmenica DSM 5511]
Length = 269
Score = 62.0 bits (149), Expect = 1e-06, Method: Composition-based stats.
Identities = 52/187 (27%), Positives = 79/187 (42%), Gaps = 24/187 (12%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDL--EWLRDVPPDKAKEYLLSFR 505
A+ +++A TI G+ N + + ++ + GS +++D P +E LLS R
Sbjct: 96 AEQSRLAETISSAGLYNQKSEVLIRTAEWVLEEFGSAAAFDAFVKDEDPAAVRETLLSIR 155
Query: 506 GLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESI 564
G+G K+ +CV L FPVDT+V RI R+G P E ++ L P +
Sbjct: 156 GIGPKTADCVLLFAGGRGGVFPVDTHVHRIYRRMGIAPAAADHEGVRAVLEREVPAAK-- 213
Query: 565 QKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGECRHFASAFAS 620
C H I FG+ +CT KP C +ACPM C A+
Sbjct: 214 --------CGFG-------HTATIQFGREYCTARKPACLEDPDACPMADVCEQVGVYPAT 258
Query: 621 SRLALPG 627
+ P
Sbjct: 259 GEVVDPA 265
>gi|448298656|ref|ZP_21488684.1| HhH-GPD family protein [Natronorubrum tibetense GA33]
gi|445591326|gb|ELY45532.1| HhH-GPD family protein [Natronorubrum tibetense GA33]
Length = 298
Score = 62.0 bits (149), Expect = 2e-06, Method: Composition-based stats.
Identities = 51/171 (29%), Positives = 78/171 (45%), Gaps = 24/171 (14%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDL--EWLRDVPPDKAKEYLLSFR 505
A+ +++A TI G+ N + + D ++ + GS ++++D P + + LLS R
Sbjct: 122 AEQSELAETISGAGLYNQKSETLIDTAEWVLEEFGSATAFDDYVKDEDPSEVRATLLSVR 181
Query: 506 GLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESI 564
G+G K+ +CV L FPVDT+V RI RLG P E+++ L P +
Sbjct: 182 GVGPKTADCVLLFAGGRGGVFPVDTHVHRIYRRLGIAPADADHEAVRAVLERDIPAAK-- 239
Query: 565 QKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGEC 611
C H I FG+ +CT KP C +ACPM C
Sbjct: 240 --------CGF-------AHTATIQFGREYCTARKPACLEDPDACPMGDLC 275
>gi|242780797|ref|XP_002479670.1| HhH-GPD family base excision DNA repair protein [Talaromyces
stipitatus ATCC 10500]
gi|218719817|gb|EED19236.1| HhH-GPD family base excision DNA repair protein [Talaromyces
stipitatus ATCC 10500]
Length = 407
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 60/144 (41%), Gaps = 38/144 (26%)
Query: 437 KDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRL------------------- 477
K S+DW AVR A +N++ +K G+ + IK+ LN +
Sbjct: 219 KGSVDWNAVRVAPINEVFEAMKSGGLATTKSKYIKEILNMVYEENLARKEAHIKSEEEGN 278
Query: 478 -------------------VRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLL 518
+ D + L+W+ + ++A L+ F G+G K+ CV L
Sbjct: 279 SGPAGAEHESKAQKEVEIALTDENVLSLDWIHALDKEEAMLELIKFPGIGPKTAACVVLF 338
Query: 519 TLHHLAFPVDTNVGRIAVRLGWVP 542
L F VDT++ RI LGW+P
Sbjct: 339 CLQRPCFAVDTHIFRICKWLGWLP 362
>gi|389861151|ref|YP_006363391.1| HhH-GPD family protein [Thermogladius cellulolyticus 1633]
gi|388526055|gb|AFK51253.1| HhH-GPD family protein [Thermogladius cellulolyticus 1633]
Length = 227
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 79/174 (45%), Gaps = 19/174 (10%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
E V DV ++A IK G++ A RI + + L RD +R + +A+E L+
Sbjct: 67 EKVLSLDVGELAQLIKPAGLHLQRARRIVELASYL-RDRLEEFESEVRRMDVLEAREVLM 125
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
+ G+G K+ + V L+ AFPVDT++ RI RLG+V + L P
Sbjct: 126 NLPGVGDKTADVVLLVYFGKPAFPVDTHIKRITTRLGFVKGGSYKKVSGFWQSCLPP--- 182
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFAS 616
KYL E H +I G+ C KP C+ CP++ C ++ S
Sbjct: 183 --DKYL-------------ETHLLLIQHGRAICKARKPLCHECPIKEFCEYYKS 221
>gi|448733380|ref|ZP_21715625.1| HhH-GPD family protein [Halococcus salifodinae DSM 8989]
gi|445803114|gb|EMA53414.1| HhH-GPD family protein [Halococcus salifodinae DSM 8989]
Length = 279
Score = 62.0 bits (149), Expect = 2e-06, Method: Composition-based stats.
Identities = 49/171 (28%), Positives = 78/171 (45%), Gaps = 24/171 (14%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDL--EWLRDVPPDKAKEYLLSFR 505
AD +A TI+ G+ N + + R+V ++G + ++ + P+ ++ LL F
Sbjct: 105 ADQPTLAETIESAGLYNQKSATMIAIAERIVDEYGGAEEFNGFVAEGDPETVRDALLDFS 164
Query: 506 GLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESI 564
G+G K+ +CV L + FPVDT+V RI RLG P + E ++ + + P +
Sbjct: 165 GVGPKTADCVLLFSGGRAGVFPVDTHVHRIYRRLGIAPPEADHEEVRAVVEDQVPAEK-- 222
Query: 565 QKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGEC 611
C H I FG+ +CT KP C +ACPM C
Sbjct: 223 --------CGFG-------HTASIQFGREYCTARKPACLDDPDACPMADLC 258
>gi|379005350|ref|YP_005261022.1| putative EndoIII-related endonuclease [Pyrobaculum oguniense TE7]
gi|375160803|gb|AFA40415.1| putative EndoIII-related endonuclease [Pyrobaculum oguniense TE7]
Length = 218
Score = 62.0 bits (149), Expect = 2e-06, Method: Composition-based stats.
Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 23/176 (13%)
Query: 439 SLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAK 498
S+ E++R + ++ IK GM A +K + + + E L + D A+
Sbjct: 62 SITPESLRGISLGELEELIKPAGMYRQRARYLKALADAFITLE--ITPEKLVKMGADAAR 119
Query: 499 EYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY 558
+ L+ G+G K+ + V L+ L AFPVDT++ RIA R G +
Sbjct: 120 KLLMGLPGVGRKTADVV-LVNLGLPAFPVDTHITRIAKRWG-----------------VG 161
Query: 559 PVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
E I ++ +L K +R L E H ++I FG+ C KP C CP+ C F
Sbjct: 162 SRYEDISRWFMEQLQK--ERCL-EFHLKLIQFGRDICKARKPRCEECPIGERCPSF 214
>gi|359417776|ref|ZP_09209845.1| HhH-GPD family protein [Candidatus Haloredivivus sp. G17]
gi|358031869|gb|EHK00704.1| HhH-GPD family protein [Candidatus Haloredivivus sp. G17]
Length = 215
Score = 61.6 bits (148), Expect = 2e-06, Method: Composition-based stats.
Identities = 48/172 (27%), Positives = 78/172 (45%), Gaps = 18/172 (10%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
D+E +R AD ++ +TI+ G+ A RI++ LN + + GS +E+L ++ D+ K++
Sbjct: 61 DFEEIRYADKEELIDTIRIAGLGPTKAERIQEALNIIYEEEGSYSVEFLDELSLDEGKKW 120
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
L G+G K+ + PVDT+V R+A R G VP + + +
Sbjct: 121 LTDIPGIGPKTASVILGFHFKKPTIPVDTHVHRLANRYGLVPEGSSRK-------RTHDI 173
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
LE K+ Y H +I G+ C SK C C + E R
Sbjct: 174 LEE----------KVPDEIKYSFHRLLIEHGRAECKASKDECQ-CELCEEYR 214
>gi|374308995|ref|YP_005055425.1| iron-sulfur cluster loop [Granulicella mallensis MP5ACTX8]
gi|358751005|gb|AEU34395.1| iron-sulfur cluster loop [Granulicella mallensis MP5ACTX8]
Length = 261
Score = 61.6 bits (148), Expect = 2e-06, Method: Composition-based stats.
Identities = 55/189 (29%), Positives = 79/189 (41%), Gaps = 15/189 (7%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
+WE+VR A V +I I + A R+K L + +GS+ L++L DK + +
Sbjct: 85 NWESVRDATVAEIERAIAVVTFPEVKAPRLKAALMGITERYGSLTLDFLARYRTDKIRSW 144
Query: 501 LLSFRGLGLK-SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
L F G+G + S V TL A +D N R+ RL VP + + L+ L P
Sbjct: 145 LEQFEGVGPQVSAAVVNFSTLRRRAISIDANHLRVVQRLCVVPRADAAIT-EERLMRLVP 203
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFA 619
W D L E H + G+ CT S+P C ACP+ C
Sbjct: 204 -------ETW------DAEMLDEHHSLVKLHGQTLCTFSEPRCEACPLLDICPTGKRNTG 250
Query: 620 SSRLALPGP 628
+L P P
Sbjct: 251 ELKLTAPTP 259
>gi|217076701|ref|YP_002334417.1| nth endonuclease III [Thermosipho africanus TCF52B]
gi|217036554|gb|ACJ75076.1| nth endonuclease III [Thermosipho africanus TCF52B]
Length = 203
Score = 61.6 bits (148), Expect = 2e-06, Method: Composition-based stats.
Identities = 48/160 (30%), Positives = 69/160 (43%), Gaps = 27/160 (16%)
Query: 453 IANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSV 512
I IK G+ A RI + +V + + PD +E LL G+G K+
Sbjct: 66 IYELIKPAGLYRQKAKRIIEISKIIVEKYSGI--------VPDSLEE-LLKLPGVGRKTA 116
Query: 513 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRL 572
V ++ A VDT+V RI+ RLGWV + PE + L+E+ P K LW
Sbjct: 117 NIVLYVSFSKSALAVDTHVHRISNRLGWVNTKT-PEETEFKLMEILP------KNLWG-- 167
Query: 573 CKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
++ M+ FGK C PNC CP+ C+
Sbjct: 168 ---------PINGSMVEFGKKVCKPVSPNCKICPISKYCK 198
>gi|407477461|ref|YP_006791338.1| endonuclease III [Exiguobacterium antarcticum B7]
gi|407061540|gb|AFS70730.1| Endonuclease III [Exiguobacterium antarcticum B7]
Length = 222
Score = 61.6 bits (148), Expect = 2e-06, Method: Composition-based stats.
Identities = 49/170 (28%), Positives = 74/170 (43%), Gaps = 26/170 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
E + A V +I IK G+ A IK RLV H +VP D+A L
Sbjct: 63 ERLAAAPVEQIEEKIKRLGLYRNKAKNIKALAERLVTLHDG-------EVPTDRAG--LE 113
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
+ G+G K+ V + AF VDT+V R++ RLG + +++ L+ +
Sbjct: 114 ALPGVGRKTANVVLSVAFDVPAFAVDTHVERVSKRLGICRWKDNVTQVEVTLMRRF---- 169
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
++ W +L H+Q I FG+ C +PNC CP+ CR
Sbjct: 170 --KRERWSKL-----------HHQFIFFGRYHCKAQRPNCLECPLLDMCR 206
>gi|337283826|ref|YP_004623300.1| endonuclease III [Pyrococcus yayanosii CH1]
gi|334899760|gb|AEH24028.1| endonuclease III [Pyrococcus yayanosii CH1]
Length = 234
Score = 61.6 bits (148), Expect = 2e-06, Method: Composition-based stats.
Identities = 42/127 (33%), Positives = 58/127 (45%), Gaps = 18/127 (14%)
Query: 494 PDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 553
PD +E L+ G+G K V A PVDT+V R++ RLG PL+ PE ++ +
Sbjct: 126 PDTLEE-LMKLPGIGRKCANIVLAYGFGKPAIPVDTHVNRVSKRLGLAPLEASPEKVEEY 184
Query: 554 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
L L P E W LY +++ M+ GK C KP CN CP+R C
Sbjct: 185 LKVLIPKEE------W----------LY-VNHAMVDHGKKVCRPIKPKCNECPVRNLCPK 227
Query: 614 FASAFAS 620
F +
Sbjct: 228 VGIKFGT 234
>gi|220931064|ref|YP_002507972.1| HhH-GPD family protein [Halothermothrix orenii H 168]
gi|219992374|gb|ACL68977.1| HhH-GPD family protein [Halothermothrix orenii H 168]
Length = 224
Score = 61.6 bits (148), Expect = 2e-06, Method: Composition-based stats.
Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 16/154 (10%)
Query: 454 ANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVE 513
A IK G NM A +IK F+N L D+G L+ + P K ++ LL G+G ++ +
Sbjct: 84 AKMIKPAGYYNMKARKIKAFINFLFEDYGG-SLDEMFQEPLSKIRDKLLEVYGIGPETAD 142
Query: 514 CVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLC 573
+ L F +D RI R+G++ +LQ +++ P I
Sbjct: 143 SILLYAGEFPVFVIDAYTKRIFSRIGYIEENIGYHTLQKMIMDNLPARTGIYN------- 195
Query: 574 KLDQRTLYELHYQMITFGKVFCTKSKPNCNACPM 607
E H ++ GK C K+ P C CP+
Sbjct: 196 --------EYHALLVALGKEICKKNNPLCEKCPL 221
>gi|302871235|ref|YP_003839871.1| HhH-GPD family protein [Caldicellulosiruptor obsidiansis OB47]
gi|302574094|gb|ADL41885.1| HhH-GPD family protein [Caldicellulosiruptor obsidiansis OB47]
Length = 234
Score = 61.6 bits (148), Expect = 2e-06, Method: Composition-based stats.
Identities = 50/165 (30%), Positives = 77/165 (46%), Gaps = 19/165 (11%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
K+A IK G N A R+K+F N L R+ S DLE L + ++ LLS +G+G ++
Sbjct: 84 KLAELIKPAGYYNQKAKRLKEFCNFLKREFNS-DLEKLFALDILSLRKILLSQKGIGFET 142
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
+ + L F VD+ R+ RLG L ES ++ +L ++
Sbjct: 143 ADSIILYGAEKPIFVVDSYTKRLFYRLG------LIESEKISYSDLQAII---------- 186
Query: 572 LCKLDQRTLY--ELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
+ KL +T + E H ++ K C KP CN C +R C +F
Sbjct: 187 MAKLTPQTKFFNEFHALIVKHCKEICKSKKPICNKCCLRLICNYF 231
>gi|73668473|ref|YP_304488.1| endonuclease III [Methanosarcina barkeri str. Fusaro]
gi|72395635|gb|AAZ69908.1| endonuclease III [Methanosarcina barkeri str. Fusaro]
Length = 204
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 76/169 (44%), Gaps = 28/169 (16%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
E VR ADV++I IK+ G + AGRIK+ L+ +G VP D E LL
Sbjct: 59 EMVR-ADVSEIETLIKDVGFYRVKAGRIKEISRLLLEKYGG-------RVPDDM--EALL 108
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
G+G K+ CV A VDT+V RI+ RLG V + +PE + L +++P
Sbjct: 109 ELPGVGRKTANCVLAHAFLKDALAVDTHVHRISNRLGLVETK-VPEETETELKKIFP--- 164
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
QKY W ++ ++ G+ C P C C + C
Sbjct: 165 --QKY-W-----------RHVNLLLVKLGQNTCRPISPRCKTCTLDDIC 199
>gi|254424749|ref|ZP_05038467.1| hypothetical protein S7335_4909 [Synechococcus sp. PCC 7335]
gi|196192238|gb|EDX87202.1| hypothetical protein S7335_4909 [Synechococcus sp. PCC 7335]
Length = 254
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 79/172 (45%), Gaps = 14/172 (8%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
DW+ VR A + I A RI+ L ++ ++ G++ +++L D+P +A+ +
Sbjct: 83 DWKLVRDAKTEAVQAAIAPCTWPEQKAPRIQQILQQITKERGTLSIDFLADIPVAEARAW 142
Query: 501 LLSFRGLGLKSVECVRLL-TLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
L + G+G K+ V TL A PVD++ R+AVR +P ++ + +
Sbjct: 143 LETLTGVGPKTSAAVLAFSTLRRRALPVDSHHHRVAVRTELIP-------KKVTVGPSHA 195
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
+LE+ W + +Y+ H ++ G+ C P C+ C + C
Sbjct: 196 ILEAQLPEDW------SAQQVYDNHEVLMLHGQHCCHYRNPTCDRCVILDLC 241
>gi|303324187|ref|XP_003072081.1| HhH-GPD family base excision DNA repair protein [Coccidioides
posadasii C735 delta SOWgp]
gi|240111791|gb|EER29936.1| HhH-GPD family base excision DNA repair protein [Coccidioides
posadasii C735 delta SOWgp]
gi|320037075|gb|EFW19013.1| helix-hairpin-helix domain-containing protein [Coccidioides
posadasii str. Silveira]
Length = 444
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 23/144 (15%)
Query: 437 KDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRL------------------- 477
K S++W VR A V +I + IK G+ + + IK+ L +
Sbjct: 236 KGSVNWNKVREATVQEIRDAIKSGGLADTKSKHIKEILTMVYEQNIARRKDLVDAKQGGD 295
Query: 478 ----VRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGR 533
+ D + L+ + + D+A + + + G+G+K+ CV L L F VDT+V R
Sbjct: 296 ETVHLSDEHMLSLDHMHGLSKDEAMQEFIKYPGIGVKTAACVVLFCLRRPCFAVDTHVFR 355
Query: 534 IAVRLGWVPLQPLPESLQLHLLEL 557
+ LGWVP + + E LE+
Sbjct: 356 LCKWLGWVPPEKVNEITAFRHLEV 379
>gi|118430904|ref|NP_147001.2| endonuclease III [Aeropyrum pernix K1]
gi|116062229|dbj|BAA79061.2| endonuclease III [Aeropyrum pernix K1]
Length = 229
Score = 61.6 bits (148), Expect = 2e-06, Method: Composition-based stats.
Identities = 46/172 (26%), Positives = 76/172 (44%), Gaps = 25/172 (14%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
EA+ A + + I+E G+ A +K +VR G +L PP++ +E L+
Sbjct: 76 EAILEASYDDLVEAIREAGLPRQKASALKALAEAVVRWGGE---NYLLKAPPEELREKLM 132
Query: 503 SFRGLGLKSVECVRLLTLHHLA---FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
S RG+G K+ + L+L A F VDT+ R+A R G V + + +
Sbjct: 133 SIRGIGPKTADV--FLSLVRKAPGVFAVDTHAARVARRWGLVGEKAGYDEIS-------- 182
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
+++ Y P + E H +I G+ +C +P C CP+R C
Sbjct: 183 --KALYNYFGPGNSE-------EAHRLIIALGRTYCKARRPRCRECPLRSVC 225
>gi|11499282|ref|NP_070520.1| endonuclease III [Archaeoglobus fulgidus DSM 4304]
gi|2648861|gb|AAB89556.1| endonuclease III (nth) [Archaeoglobus fulgidus DSM 4304]
Length = 209
Score = 61.2 bits (147), Expect = 2e-06, Method: Composition-based stats.
Identities = 51/158 (32%), Positives = 73/158 (46%), Gaps = 28/158 (17%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
+IA IK G + A R+K+ +LV D+ S +VP + E L+ G+G KS
Sbjct: 73 EIAELIKGVGFYRVKAKRLKELAKKLVEDYSS-------EVP--LSFEELVKLPGIGRKS 123
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
V L A PVDT+V RIA RLGW PE + L L+P+ W +
Sbjct: 124 ANVV-LAYSDIPAIPVDTHVHRIANRLGWARTTK-PEETEEVLKRLFPL------EFWEK 175
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRG 609
+ + M+ FG+ C KP C+ CP++G
Sbjct: 176 VNR-----------AMVGFGQTVCKPQKPLCDECPIKG 202
>gi|336252280|ref|YP_004595387.1| HhH-GPD family protein [Halopiger xanaduensis SH-6]
gi|335336269|gb|AEH35508.1| HhH-GPD family protein [Halopiger xanaduensis SH-6]
Length = 274
Score = 61.2 bits (147), Expect = 2e-06, Method: Composition-based stats.
Identities = 53/178 (29%), Positives = 79/178 (44%), Gaps = 24/178 (13%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDL--EWLRDVPPDKAKEY 500
E++ A+ + +A TI+ G+ N + I D ++ GS E+++D P + +E
Sbjct: 91 ESLAGAEQSILAETIQPAGLYNQKSEIIIDTAEWVLEAFGSAAAFDEFVKDEDPAEVRET 150
Query: 501 LLSFRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
LL RG+G K+ +CV L FPVDT+V RI RLG P E+++ L P
Sbjct: 151 LLEVRGVGPKTADCVLLFAGGRGGVFPVDTHVHRIYRRLGIAPADADHEAVRAVLEREVP 210
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGECRH 613
+ C H I FG+ +C+ KP C ACPM C
Sbjct: 211 AEK----------CGFG-------HTASIQFGREYCSARKPACLEDPEACPMADLCEQ 251
>gi|406911545|gb|EKD51317.1| Helix-hairpin-helix motif:HhH-GPD [uncultured bacterium]
Length = 212
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 71/171 (41%), Gaps = 17/171 (9%)
Query: 440 LDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKE 499
L +E + +A IK G N+ R+K FL + R+ G D + L + +E
Sbjct: 58 LSFERLLATPAQSVAELIKPAGYFNIKTKRLKSFLGAIKREQG--DFDTLSSLSTSSLRE 115
Query: 500 YLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
+LLS G+G ++ + + L F VD R+ R V E+ L
Sbjct: 116 FLLSISGIGPETADSMMLYAFERPVFVVDAYTNRMLTRHSLVD----EEADYFRL----- 166
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGE 610
Q+Y L K D E H ++ GK FC KS P C CP+R E
Sbjct: 167 -----QEYFEDHLEK-DVALFNEYHALIVKLGKEFCRKSNPKCEECPLREE 211
>gi|346314278|ref|ZP_08855799.1| endonuclease III [Erysipelotrichaceae bacterium 2_2_44A]
gi|345906636|gb|EGX76360.1| endonuclease III [Erysipelotrichaceae bacterium 2_2_44A]
Length = 215
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 70/165 (42%), Gaps = 26/165 (15%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
AD+ I + I+ G+ A I++ L LE V P+ KE L S G+
Sbjct: 64 ADIRDIEDKIRRIGLYRNKARSIQNLSRSL--------LESFDGVVPESMKE-LTSLAGV 114
Query: 508 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 567
G K+ VR + + VDT+V RI+ RLG +Q E ++ L +++
Sbjct: 115 GRKTANVVRSVCFDIPSIAVDTHVERISKRLGLAKVQDSVEVVEQKLKR------KLKRE 168
Query: 568 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
W R H+ I FG+ FCT P C CP + C+
Sbjct: 169 RWNRA-----------HHLFIFFGRYFCTARNPKCEECPFKEFCK 202
>gi|332800460|ref|YP_004461959.1| HhH-GPD family protein [Tepidanaerobacter acetatoxydans Re1]
gi|438003859|ref|YP_007273602.1| Endonuclease III [Tepidanaerobacter acetatoxydans Re1]
gi|332698195|gb|AEE92652.1| HhH-GPD family protein [Tepidanaerobacter acetatoxydans Re1]
gi|432180653|emb|CCP27626.1| Endonuclease III [Tepidanaerobacter acetatoxydans Re1]
Length = 217
Score = 61.2 bits (147), Expect = 2e-06, Method: Composition-based stats.
Identities = 45/175 (25%), Positives = 72/175 (41%), Gaps = 16/175 (9%)
Query: 437 KDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDK 496
K L +A+ D +K+A IK N A ++K+F + +++G P+
Sbjct: 56 KGLLSLDAILAVDKDKLAALIKSTMYYNQKALKLKNFCRYIKQNYGGDIYSLFEKSIPNM 115
Query: 497 AKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLE 556
E LLS +G+G ++ + + L F VD RI RLG++P +Q +
Sbjct: 116 RAE-LLSIKGIGPETADSIILYAAAKPIFVVDAYTRRIFSRLGFLPDDAKYSQMQDFFMS 174
Query: 557 LYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
P D E H ++ GK +C KP CN CP++ C
Sbjct: 175 NLPS---------------DVNLFNEYHALIVRLGKDYCKNKKPLCNECPVKNHC 214
>gi|313127078|ref|YP_004037348.1| endoiii-related endonuclease [Halogeometricum borinquense DSM
11551]
gi|448288454|ref|ZP_21479653.1| endoiii-related endonuclease [Halogeometricum borinquense DSM
11551]
gi|312293443|gb|ADQ67903.1| predicted endoIII-related endonuclease [Halogeometricum borinquense
DSM 11551]
gi|445569605|gb|ELY24177.1| endoiii-related endonuclease [Halogeometricum borinquense DSM
11551]
Length = 277
Score = 61.2 bits (147), Expect = 3e-06, Method: Composition-based stats.
Identities = 49/168 (29%), Positives = 72/168 (42%), Gaps = 24/168 (14%)
Query: 451 NKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVD--LEWLRDVPPDKAKEYLLSFRGLG 508
+++A TI G+ N + I R+ G D E+++D PD ++ LL G+G
Sbjct: 108 SELAETIASAGLYNQKSEMIIGAAERICESFGGADGFDEFVKDEDPDTVRKRLLDIHGVG 167
Query: 509 LKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 567
K+ +CV L + FPVDT+V RI R+G E ++ HL P +
Sbjct: 168 PKTADCVLLFSGGRGGVFPVDTHVHRIGRRMGLASADADHEDVREHLEADVPAEK----- 222
Query: 568 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGEC 611
C H MI FG+ +C KP C ACP+ C
Sbjct: 223 -----CGFG-------HTAMIQFGREYCKARKPACLDGPEACPLYDLC 258
>gi|341583175|ref|YP_004763667.1| endonuclease III [Thermococcus sp. 4557]
gi|340810833|gb|AEK73990.1| endonuclease III [Thermococcus sp. 4557]
Length = 238
Score = 61.2 bits (147), Expect = 3e-06, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 56/118 (47%), Gaps = 18/118 (15%)
Query: 494 PDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 553
PD KE L+ G+G K V A PVDT+V RI+ RLG P + PE ++ +
Sbjct: 126 PDDIKE-LMKLPGIGRKCANIVLAYGFGRQAIPVDTHVNRISKRLGLAPPRVQPEKVEEY 184
Query: 554 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
L EL P +K+++ +++ M+ GK C P C+ CP+R C
Sbjct: 185 LAELIPY----EKWIY-------------VNHAMVDHGKSICRPIGPKCDECPLRELC 225
>gi|419759441|ref|ZP_14285740.1| endonuclease III [Thermosipho africanus H17ap60334]
gi|407515451|gb|EKF50196.1| endonuclease III [Thermosipho africanus H17ap60334]
Length = 203
Score = 61.2 bits (147), Expect = 3e-06, Method: Composition-based stats.
Identities = 48/160 (30%), Positives = 69/160 (43%), Gaps = 27/160 (16%)
Query: 453 IANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSV 512
I IK G+ A RI + +V + + PD +E LL G+G K+
Sbjct: 66 IYELIKPAGLYRQKAKRIIEISKIIVEKYSGI--------VPDSLEE-LLKLPGVGRKTA 116
Query: 513 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRL 572
V ++ A VDT+V RI+ RLGWV + PE + L+E+ P K LW
Sbjct: 117 NIVLYVSFSKPALAVDTHVHRISNRLGWVNTKT-PEETEFKLMEILP------KNLWG-- 167
Query: 573 CKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
++ M+ FGK C PNC CP+ C+
Sbjct: 168 ---------PINGSMVEFGKKVCKPVSPNCKICPISKYCK 198
>gi|383788526|ref|YP_005473095.1| DNA glycosylase [Caldisericum exile AZM16c01]
gi|381364163|dbj|BAL80992.1| DNA glycosylase [Caldisericum exile AZM16c01]
Length = 241
Score = 61.2 bits (147), Expect = 3e-06, Method: Composition-based stats.
Identities = 49/173 (28%), Positives = 80/173 (46%), Gaps = 33/173 (19%)
Query: 449 DVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLG 508
D+ +++N IKE G + A R+K+FL+ + + +L L + + + LL+ +G+G
Sbjct: 79 DIQELSNYIKESGFYRLKAQRLKNFLDFFKK--YNFELLDLTHIEIENLRNELLNIKGVG 136
Query: 509 LKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYL 568
++ + + L L F VD R AVR G +LE++ Y
Sbjct: 137 KETADSIILYALEKPIFVVDNYTKRFAVRFG--------------------ILENMSSYD 176
Query: 569 WPRLCKLD-------QRTLY---ELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
RL D + TL E+H ++ GK FC K +PNC+ACP+ C
Sbjct: 177 EIRLLFEDALKSENEKETLIRFKEMHALIVELGKNFC-KKEPNCSACPLGNLC 228
>gi|116747801|ref|YP_844488.1| HhH-GPD family protein [Syntrophobacter fumaroxidans MPOB]
gi|116696865|gb|ABK16053.1| DNA-3-methyladenine glycosylase III [Syntrophobacter fumaroxidans
MPOB]
Length = 222
Score = 61.2 bits (147), Expect = 3e-06, Method: Composition-based stats.
Identities = 48/171 (28%), Positives = 73/171 (42%), Gaps = 19/171 (11%)
Query: 440 LDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKE 499
L +EA+ +A I+ G N A ++K F R V + G L+ D +
Sbjct: 62 LSFEALCAVPEPLLAELIRSSGYYNQKARKLKAFC-RHVCETGHAGLDGFLAQDTDTLRS 120
Query: 500 YLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLE-LY 558
LL RG+G ++ + + L H +F VDT R+ R GWV P + L+ ++ L
Sbjct: 121 ELLRIRGVGPETADSIVLYAAHKPSFVVDTYTHRVFSRHGWVQESPSYDELRGFFMDCLE 180
Query: 559 PVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRG 609
P D ELH ++ G +FC K+ P C CP+ G
Sbjct: 181 P----------------DVGLFQELHALLVRTGHLFCRKT-PRCGGCPLEG 214
>gi|304314918|ref|YP_003850065.1| endonuclease III [Methanothermobacter marburgensis str. Marburg]
gi|302588377|gb|ADL58752.1| endonuclease III [Methanothermobacter marburgensis str. Marburg]
Length = 215
Score = 61.2 bits (147), Expect = 3e-06, Method: Composition-based stats.
Identities = 51/174 (29%), Positives = 81/174 (46%), Gaps = 27/174 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
E V A V K+ +++ G ++ A RI++ L+ ++G VP D + LL
Sbjct: 61 EDVAYAPVEKLEQLVRKAGFYHVKARRIREVSRILLEEYGG-------RVPDDI--DELL 111
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
G+G K+ CV + + PVDT+V RI+ R+G V + PE + L+E+ P
Sbjct: 112 KLPGVGRKTANCVLVYAFNKPVVPVDTHVHRISNRIGLVNTRT-PEETERVLMEVIP--- 167
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFAS 616
+KY W EL+ M+ FG+ C P CP+ EC ++ S
Sbjct: 168 --RKY-W-----------IELNDLMVQFGQDICRPVGPRHEECPIADECDYYKS 207
>gi|20093393|ref|NP_619468.1| DNA-(apurinic or apyrimidinic site) lyase [Methanosarcina
acetivorans C2A]
gi|19918762|gb|AAM07948.1| DNA-(apurinic or apyrimidinic site) lyase [Methanosarcina
acetivorans C2A]
Length = 216
Score = 61.2 bits (147), Expect = 3e-06, Method: Composition-based stats.
Identities = 50/164 (30%), Positives = 73/164 (44%), Gaps = 27/164 (16%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
ADV +I IK+ G + +GRIK+ L+ ++ +VP D E LL G+
Sbjct: 75 ADVEEIEALIKDVGFYRVKSGRIKEISGILLEEYDG-------EVPDDM--ETLLKLPGV 125
Query: 508 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 567
G K+ CV A VDT+V RI+ RLG V + PE +L L +++P QKY
Sbjct: 126 GRKTANCVLAHAFLKDALAVDTHVHRISNRLGLVETKT-PEETELELKKIFP-----QKY 179
Query: 568 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
W + L ++ G+ C P C C + C
Sbjct: 180 -WKHINLL-----------LVKLGQNICRPISPKCEVCVLNDMC 211
>gi|294496431|ref|YP_003542924.1| DNA-(apurinic or apyrimidinic site) lyase [Methanohalophilus mahii
DSM 5219]
gi|292667430|gb|ADE37279.1| DNA-(apurinic or apyrimidinic site) lyase [Methanohalophilus mahii
DSM 5219]
Length = 206
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 69/164 (42%), Gaps = 27/164 (16%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
ADV KI IK+ G + AGRIK+ L+ ++ S VP + LL G+
Sbjct: 63 ADVEKIEILIKDVGFYRVKAGRIKEISQILIDEYDS-------QVPASMVE--LLKLPGV 113
Query: 508 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 567
G K+ CV A VDT+V RI+ RLG V P+ ++ L + PV
Sbjct: 114 GRKTANCVLSYAFLEKAIAVDTHVHRISNRLGLVD-TVTPDQTEIELQKQVPV------S 166
Query: 568 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
W R + EL Q FGK C P C C + C
Sbjct: 167 YW--------REVNELFVQ---FGKTVCKPLSPACEVCAIEDLC 199
>gi|240103334|ref|YP_002959643.1| Endonuclease III (nth) [Thermococcus gammatolerans EJ3]
gi|239910888|gb|ACS33779.1| Endonuclease III (nth) [Thermococcus gammatolerans EJ3]
Length = 230
Score = 61.2 bits (147), Expect = 3e-06, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 18/118 (15%)
Query: 494 PDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 553
PD KE L+ G+G K V A PVDT+V RI+ RLG P + PE ++ +
Sbjct: 118 PDDIKE-LMKLPGIGRKCANIVLAYGFGRQAIPVDTHVNRISKRLGLAPPRVPPEKVEEY 176
Query: 554 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
L+EL P +K+++ +++ M+ G+ C +P C +CP++ C
Sbjct: 177 LMELIPK----EKWIY-------------VNHAMVDHGRSICRPIRPKCESCPLKELC 217
>gi|119173285|ref|XP_001239121.1| hypothetical protein CIMG_10143 [Coccidioides immitis RS]
Length = 434
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 23/144 (15%)
Query: 437 KDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRL------------------- 477
K S++W VR A V +I + IK G+ + + IK+ L +
Sbjct: 226 KGSVNWNKVREAPVQEIRDAIKSGGLADTKSKHIKEILTMVFEQNIARRKDLVDAKQGGN 285
Query: 478 ----VRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGR 533
+ D + L+ + + D+A + + + G+G+K+ CV L L F VDT+V R
Sbjct: 286 ETVHLSDEHMLSLDHMHGLSKDEAMQEFIKYPGIGVKTAACVVLFCLRRPCFAVDTHVFR 345
Query: 534 IAVRLGWVPLQPLPESLQLHLLEL 557
+ LGWVP + + E LE+
Sbjct: 346 LCKWLGWVPPEKVNEITAFRHLEV 369
>gi|85375166|ref|YP_459228.1| endonuclease III [Erythrobacter litoralis HTCC2594]
gi|84788249|gb|ABC64431.1| endonuclease III [Erythrobacter litoralis HTCC2594]
Length = 224
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 66/167 (39%), Gaps = 27/167 (16%)
Query: 449 DVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLG 508
D IA IK G+ NM I+ F L+ +H R V PD +E LLS G+G
Sbjct: 76 DDEAIAQAIKPCGLYNMKTRNIRKFNQALLAEH--------RGVVPD-TREGLLSLPGIG 126
Query: 509 LKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYL 568
K + V T VDT+V R+ R+G + ++ + L E P +
Sbjct: 127 RKCADIVMSFTFGKDVIAVDTHVHRVCNRIGLTDAKTADKTAE-QLEERAPRWAHADGHF 185
Query: 569 WPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFA 615
W +I FGK CT P C CP+ C +A
Sbjct: 186 W-----------------LIQFGKRVCTSRAPKCERCPVSDLCLWYA 215
>gi|114566352|ref|YP_753506.1| HhH-GPD [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
gi|114337287|gb|ABI68135.1| DNA-3-methyladenine glycosylase III [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
Length = 222
Score = 60.8 bits (146), Expect = 3e-06, Method: Composition-based stats.
Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 18/173 (10%)
Query: 440 LDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHG-SVDLEWLRDVPPDKAK 498
LD+ A+R ++A+ IK + A R+K L+ + ++G +DL + +P +A+
Sbjct: 59 LDFPALRSIAEEELADFIKPALYHRQKARRLKILLDFIAENYGGDIDLMFSEPLPQIRAR 118
Query: 499 EYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY 558
LL+ G+G ++ + + L ++ F VD RI RLGWV + E +Q +
Sbjct: 119 --LLALWGIGPETADSILLYAGNYPVFVVDAYTIRIFTRLGWVEDKCSYEKMQGLMQNHL 176
Query: 559 PVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
PV D + E H ++ G +C K K C CP+ C
Sbjct: 177 PV---------------DTQIYNEYHALLVALGANYCKKKKALCQECPLAEYC 214
>gi|15897075|ref|NP_341680.1| DNA endonuclease III, (ntH-1) [Sulfolobus solfataricus P2]
gi|284173420|ref|ZP_06387389.1| DNA endonuclease III, (ntH-1) [Sulfolobus solfataricus 98/2]
gi|384433576|ref|YP_005642934.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus solfataricus
98/2]
gi|1707778|emb|CAA69576.1| endonuclease III [Sulfolobus solfataricus P2]
gi|13813246|gb|AAK40470.1| DNA endonuclease III, probable (ntH-1) [Sulfolobus solfataricus P2]
gi|261601730|gb|ACX91333.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus solfataricus
98/2]
Length = 236
Score = 60.8 bits (146), Expect = 3e-06, Method: Composition-based stats.
Identities = 48/179 (26%), Positives = 86/179 (48%), Gaps = 29/179 (16%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLV--RDHGSVDLEWLRDVPPDKAKEY 500
E + A++ I + +K G+ A R+K+ ++R++ R +G +D + A++
Sbjct: 69 EKLSNANLADIESALKISGLYRTKAKRLKE-ISRIILERYNGLID----SLLNTSNARDE 123
Query: 501 LLSFRGLGLKSVECVRLLTLH----HLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLE 556
LL G+G K+ + V LLT + + FPVDT++ R++ RLG VP + L E
Sbjct: 124 LLKLEGIGEKTADVV-LLTCYGYYGYKVFPVDTHITRVSKRLGIVPTNAKYSLISSTLKE 182
Query: 557 LYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFA 615
L+ + L LH+ +I G+ C KP CN+C ++ C +++
Sbjct: 183 LFSAYD-----------------LLHLHHMLIAHGRQTCKARKPLCNSCIIKECCEYYS 224
>gi|453088940|gb|EMF16980.1| DNA glycosylase [Mycosphaerella populorum SO2202]
Length = 489
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 89/237 (37%), Gaps = 52/237 (21%)
Query: 404 TRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMN 463
TR+S N + R V G KE K S+DW AVR A + I+ G+
Sbjct: 195 TRLSANTTNSNSSTAFRGLVSRFGTLKE--GIGKGSVDWNAVRLAPQQDVFKAIERGGLA 252
Query: 464 NMLAGRIKDFLNRLVR-----------------------------------DHGSVDLEW 488
N+ + IK+ L + D + L+
Sbjct: 253 NVKSKDIKNILQMVYEENQERRAALLTSNDNASESQSAPESSTQTEEITKADQDVISLDH 312
Query: 489 LRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPE 548
L + + A + L+++ G+G K+ CV L L +F VDT+V R+ LGWVP
Sbjct: 313 LHLMSTNDAIDKLITYPGIGPKTASCVALFCLQRPSFAVDTHVFRLVQYLGWVPKSTKKG 372
Query: 549 SLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNAC 605
++ Y ++ K+ Y+LHY +I GK C P C A
Sbjct: 373 QPKVDRNTTYSHCDA----------KIPDEYKYKLHYLLIKHGKT-C----PRCRAA 414
>gi|448302984|ref|ZP_21492934.1| HhH-GPD family protein [Natronorubrum sulfidifaciens JCM 14089]
gi|445593991|gb|ELY48158.1| HhH-GPD family protein [Natronorubrum sulfidifaciens JCM 14089]
Length = 270
Score = 60.8 bits (146), Expect = 3e-06, Method: Composition-based stats.
Identities = 61/225 (27%), Positives = 93/225 (41%), Gaps = 42/225 (18%)
Query: 429 KKERPEHTK-------DSLDW-EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRD 480
K +P H + D +D E++ A+ + +A TI G+ N + I D ++ +
Sbjct: 70 KASQPAHDELMSTYGGDDIDLAESLASAEQSILAETISGAGLYNQKSETIIDTAAWVLEE 129
Query: 481 HGSVDL--EWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVR 537
GS +++D P ++ LLS RG+G K+ +CV L FPVDT+V RI R
Sbjct: 130 FGSAAAFDTFVKDEAPSTVRDTLLSVRGVGPKTADCVLLFAGGRGGVFPVDTHVHRIYRR 189
Query: 538 LGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTK 597
+G P E+++ L P + C H I FG+ +CT
Sbjct: 190 MGIAPPDADHEAVRAVLERDVPAAK----------CGFG-------HTASIQFGREYCTA 232
Query: 598 SKPNC----NACPMRGECRHFASAFASSRLALPGPEEKAIVSANE 638
P C +ACPM C PE A+V +E
Sbjct: 233 RTPACLEDPDACPMGDICEQVGVY----------PETGAVVDPSE 267
>gi|392869327|gb|EAS27228.2| HhH-GPD family base excision DNA repair protein [Coccidioides
immitis RS]
Length = 444
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 23/144 (15%)
Query: 437 KDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRL------------------- 477
K S++W VR A V +I + IK G+ + + IK+ L +
Sbjct: 236 KGSVNWNKVREAPVQEIRDAIKSGGLADTKSKHIKEILTMVFEQNIARRKDLVDAKQGGN 295
Query: 478 ----VRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGR 533
+ D + L+ + + D+A + + + G+G+K+ CV L L F VDT+V R
Sbjct: 296 ETVHLSDEHMLSLDHMHGLSKDEAMQEFIKYPGIGVKTAACVVLFCLRRPCFAVDTHVFR 355
Query: 534 IAVRLGWVPLQPLPESLQLHLLEL 557
+ LGWVP + + E LE+
Sbjct: 356 LCKWLGWVPPEKVNEITAFRHLEV 379
>gi|222099288|ref|YP_002533856.1| Repair endonuclease [Thermotoga neapolitana DSM 4359]
gi|221571678|gb|ACM22490.1| Repair endonuclease [Thermotoga neapolitana DSM 4359]
Length = 396
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 78/160 (48%), Gaps = 19/160 (11%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
+IA+ I+ G N+ A R+K L +R++ + +L+ L+ +P +E LL +G+G ++
Sbjct: 247 RIAHLIRPAGFFNIKAKRLKALLE-FLREY-NFNLKLLKRMPLGALRELLLKIKGIGKET 304
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
+ + L L F VD+ R+ R+ + L+ E +Q + YP
Sbjct: 305 ADAILLYALEKPIFVVDSYTKRLLARIFNIELKDYDE-IQKLFMSCYPH----------- 352
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
D R ELH ++ K FC+K+ P C CP++ +C
Sbjct: 353 ----DVRLYQELHGLIVEHAKRFCSKN-PKCRECPLKKKC 387
>gi|312623064|ref|YP_004024677.1| hhh-gpd family protein [Caldicellulosiruptor kronotskyensis 2002]
gi|312203531|gb|ADQ46858.1| HhH-GPD family protein [Caldicellulosiruptor kronotskyensis 2002]
Length = 225
Score = 60.8 bits (146), Expect = 4e-06, Method: Composition-based stats.
Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 15/163 (9%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
K+A IK G N A R+K+F N L R+ S DLE L + ++ LLS +G+G ++
Sbjct: 75 KLAELIKAAGYYNQKAKRLKEFCNFLKREFNS-DLEKLFALDISSLRQVLLSQKGIGFET 133
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
+ + L F VD+ R+ RLG L ES ++ +L + I L P+
Sbjct: 134 ADSIILYGAEKPIFVVDSYTKRLFYRLG------LIESEKISYNDLQAI---IMANLTPQ 184
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
+ E H ++ K C KP CN C +R C ++
Sbjct: 185 -----TKFFNEFHALIVKHCKEICKSKKPICNKCCLRLICNYY 222
>gi|409728179|ref|ZP_11271049.1| HhH-GPD family protein [Halococcus hamelinensis 100A6]
gi|448722675|ref|ZP_21705208.1| HhH-GPD family protein [Halococcus hamelinensis 100A6]
gi|445789100|gb|EMA39793.1| HhH-GPD family protein [Halococcus hamelinensis 100A6]
Length = 270
Score = 60.8 bits (146), Expect = 4e-06, Method: Composition-based stats.
Identities = 52/191 (27%), Positives = 80/191 (41%), Gaps = 24/191 (12%)
Query: 444 AVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDL--EWLRDVPPDKAKEYL 501
A+ D + +A TI+ G+ N + + R+V ++G E++ P ++ L
Sbjct: 92 ALSETDQDDLAETIQPAGLYNQKSETLGRIAGRVVEEYGGAAAFDEFVTAEDPATVRDTL 151
Query: 502 LSFRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
L F G+G K+ +CV L + FPVDT+V RI R+G P E ++ L + P
Sbjct: 152 LDFSGVGPKTADCVLLFSGGRAGVFPVDTHVHRIYRRIGVAPPDADHEGVRAVLEDQVPA 211
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGECRHFAS 616
+ C H I FG+ FC KP C +ACPM C
Sbjct: 212 EK----------CGFG-------HTATIQFGREFCKARKPACLDDPDACPMADLCDQVGV 254
Query: 617 AFASSRLALPG 627
A+ + P
Sbjct: 255 YPATDEVVDPA 265
>gi|448651578|ref|ZP_21680628.1| endonuclease III [Haloarcula californiae ATCC 33799]
gi|445770458|gb|EMA21521.1| endonuclease III [Haloarcula californiae ATCC 33799]
Length = 233
Score = 60.8 bits (146), Expect = 4e-06, Method: Composition-based stats.
Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 18/163 (11%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHG-SVDLEWLRDVPPDKAKE 499
D+ A+ AD +++A+TI+ G+ + A RI+ L + + G + L +L +P D+AK
Sbjct: 74 DFAAIESADHDELADTIRVAGLPDQKAARIQRALAAIREETGGAYSLAFLDAMPTDEAKG 133
Query: 500 YLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
+L +G+G K+ V VDT+V R++ R G V + L + P
Sbjct: 134 WLTDIKGVGPKTASVVLNFHFGKPTMAVDTHVERVSKRFGLVTESATNKRAHDELDAIIP 193
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC 602
D+ T Y LH +IT G+ FC+ P+C
Sbjct: 194 ----------------DELT-YPLHVLLITHGREFCSARSPDC 219
>gi|448330815|ref|ZP_21520091.1| HhH-GPD family protein [Natrinema versiforme JCM 10478]
gi|445610651|gb|ELY64420.1| HhH-GPD family protein [Natrinema versiforme JCM 10478]
Length = 272
Score = 60.8 bits (146), Expect = 4e-06, Method: Composition-based stats.
Identities = 55/198 (27%), Positives = 86/198 (43%), Gaps = 26/198 (13%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDL--EWLRDVPPDKAKEY 500
E++ A+ + +A TI G+ N + + D ++ + GS +++D P +E
Sbjct: 92 ESLASAEQSTLAETISGAGLYNQKSETLIDTAEWVLAEFGSAAAFDTFVKDEEPSAVRET 151
Query: 501 LLSFRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
LLS RG+G K+ +CV L FPVDT+V RI R+G P E+++ L P
Sbjct: 152 LLSVRGVGPKTADCVLLFAGGRGGVFPVDTHVHRIYRRMGIAPPDADHEAVRAVLERDVP 211
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGECRHFA 615
+ C H I FG+ +CT P C +ACPM C
Sbjct: 212 AEK----------CGFG-------HTATIQFGREYCTARTPACLEDPDACPMADICDQVG 254
Query: 616 SAFASSRLALP--GPEEK 631
A+ + P PE++
Sbjct: 255 VYPATDEVVDPAAAPEDE 272
>gi|406886945|gb|EKD33865.1| hypothetical protein ACD_75C02568G0003 [uncultured bacterium]
Length = 223
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 74/170 (43%), Gaps = 16/170 (9%)
Query: 440 LDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKE 499
+ +E + +IA IK G N+ AGR+++ LN ++ +H L+ A+E
Sbjct: 67 MTYETLSLCSAEEIAVYIKPAGYYNLKAGRLRNLLN-MIAEHYDGQLDCFLQEKLAVARE 125
Query: 500 YLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
LL +G+G ++ + + L + H F VD R+ R V + ++Q ++
Sbjct: 126 RLLDVKGIGPETADSILLYSCGHPIFVVDMYTHRVFSRHNLVAEETDYHAMQALFMD--- 182
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRG 609
+L P D E H ++ FC K+ P C CP+RG
Sbjct: 183 -------HLSP-----DPVLFNEFHALVVRVAATFCKKTNPQCETCPLRG 220
>gi|340975657|gb|EGS22772.1| hypothetical protein CTHT_0012470 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 628
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 24/139 (17%)
Query: 439 SLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRD------------------ 480
S+DW+ VR ++A TIK G A IK L+ + +
Sbjct: 376 SIDWDKVRLGSHRELAETIKIAGNGPKKASHIKQILDMVYAENLEHIEAQTVDKGSEPGG 435
Query: 481 -HGS-----VDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRI 534
HG+ + L+++ + D+A L+++ G+G+K+ CV L L F VDT+V +
Sbjct: 436 KHGTDRQDLLSLDYMHRMTKDEAMAKLVTYPGVGIKTAACVTLFCLRLPCFAVDTHVHKF 495
Query: 535 AVRLGWVPLQPLPESLQLH 553
LGWVP P++ H
Sbjct: 496 CRWLGWVPPNADPDNCFRH 514
>gi|78043065|ref|YP_359967.1| endonuclease III [Carboxydothermus hydrogenoformans Z-2901]
gi|77995180|gb|ABB14079.1| endonuclease III [Carboxydothermus hydrogenoformans Z-2901]
Length = 210
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 20/136 (14%)
Query: 477 LVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAV 536
L++ +D E+ VP A+ LL G+G K+ E + + + +FPVDT+V R+A
Sbjct: 89 LIKIAEILDREYHGQVPDSFAE--LLKLPGVGPKTAEVIVGVGFNKPSFPVDTHVFRVAR 146
Query: 537 RLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCT 596
RLG + PE + L +++P + +LH+++I FG+ C
Sbjct: 147 RLGLSKART-PEGVSFDLKKIFP-----------------PNSWIDLHHRLIFFGRRICK 188
Query: 597 KSKPNCNACPMRGECR 612
KP+CN CP C+
Sbjct: 189 AQKPSCNICPFPEFCQ 204
>gi|288560832|ref|YP_003424318.1| endonuclease III Nth [Methanobrevibacter ruminantium M1]
gi|288543542|gb|ADC47426.1| endonuclease III Nth [Methanobrevibacter ruminantium M1]
Length = 215
Score = 60.5 bits (145), Expect = 4e-06, Method: Composition-based stats.
Identities = 49/176 (27%), Positives = 74/176 (42%), Gaps = 27/176 (15%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
D AV A V + IK G + A RI + L+ +G +VP + +
Sbjct: 64 DIYAVADAPVEHVQELIKPAGFYRVKAARILEVSRILIDQYGG-------EVP--REMDE 114
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
+L G+G K+ CV + A PVDT+V RI+ R G + E+ Q+ +
Sbjct: 115 MLKLPGVGRKTANCVIVFAFQDAAIPVDTHVHRISNRWGIADTKDPEETEQV-------L 167
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFAS 616
+E + K LW L L M+ FG+ C P C+ CP+ C + S
Sbjct: 168 MEKVPKDLWVDLNDL-----------MVQFGQTICRPIGPQCDKCPISDLCDYDVS 212
>gi|212224145|ref|YP_002307381.1| endonuclease III [Thermococcus onnurineus NA1]
gi|212009102|gb|ACJ16484.1| endonuclease III [Thermococcus onnurineus NA1]
Length = 243
Score = 60.5 bits (145), Expect = 4e-06, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 56/118 (47%), Gaps = 18/118 (15%)
Query: 494 PDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 553
PD E L+ G+G K V A PVDT+V RI+ RLG P + PE ++ +
Sbjct: 126 PDDIHE-LMKLPGIGRKCANIVLAYGFGRQAIPVDTHVNRISKRLGLAPPRVQPERVEDY 184
Query: 554 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
L EL P +K+++ +++ M+ GK C KP C+ CP+R C
Sbjct: 185 LRELIPR----EKWIY-------------VNHAMVDHGKTICRPIKPRCDECPLRELC 225
>gi|170751703|ref|YP_001757963.1| helix-hairpin-helix DNA-binding motif-containing protein
[Methylobacterium radiotolerans JCM 2831]
gi|170658225|gb|ACB27280.1| helix-hairpin-helix motif protein [Methylobacterium radiotolerans
JCM 2831]
Length = 253
Score = 60.5 bits (145), Expect = 4e-06, Method: Composition-based stats.
Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 14/172 (8%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
DWEAV ADV +I I + A RI+D L L G +DL +L D+ + A+ +
Sbjct: 85 DWEAVIDADVPEIEAAIAGVTWPELKAPRIRDVLRALRDRCGGLDLAFLADMEVEAARVW 144
Query: 501 LLSFRGLGLK-SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
L + G+G K S + TL A PVD++ R+A RLG + + + +P
Sbjct: 145 LQAIPGVGPKTSAAVLSFSTLRMPALPVDSHHHRVAQRLGLI-------GKTVDVGPSHP 197
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
+L + W + LY+ H ++ G+ C +P C C + C
Sbjct: 198 ILRAQLPADW------SAQDLYDNHEILMLHGQKVCHHRRPACGRCVLVDLC 243
>gi|448362246|ref|ZP_21550857.1| HhH-GPD family protein [Natrialba asiatica DSM 12278]
gi|445648767|gb|ELZ01715.1| HhH-GPD family protein [Natrialba asiatica DSM 12278]
Length = 293
Score = 60.5 bits (145), Expect = 5e-06, Method: Composition-based stats.
Identities = 55/187 (29%), Positives = 77/187 (41%), Gaps = 24/187 (12%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDL--EWLRDVPPDKAKEYLLSFR 505
A+ ++A TI G+ N + I R+ + GS ++ D P + +E LL R
Sbjct: 120 AEQTQLAETISSAGLYNQKSEVIIGAAERVCDEFGSAAAFDAFVTDEAPGEVRETLLDVR 179
Query: 506 GLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESI 564
G+G K+ +CV L FPVDT+V RI RLG P E ++ L + P +
Sbjct: 180 GVGPKTADCVLLFAGGRSGVFPVDTHVHRIYRRLGIAPPDADHEDVREVLEDEVPTAK-- 237
Query: 565 QKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGECRHFASAFAS 620
C H I FG+ FCT KP C ACPM C A+
Sbjct: 238 --------CGFG-------HTATIQFGREFCTARKPACLDDPEACPMADICDQVGVYPAT 282
Query: 621 SRLALPG 627
+ P
Sbjct: 283 GEVVDPA 289
>gi|333911156|ref|YP_004484889.1| HhH-GPD family protein [Methanotorris igneus Kol 5]
gi|333751745|gb|AEF96824.1| HhH-GPD family protein [Methanotorris igneus Kol 5]
Length = 220
Score = 60.5 bits (145), Expect = 5e-06, Method: Composition-based stats.
Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 15/165 (9%)
Query: 449 DVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLG 508
D K+ IK G N+ A R+K+ + +V+++GS + + + ++ LL+ +G+G
Sbjct: 65 DTEKLKKLIKPAGFYNIKAERLKNITHHIVKNYGSTENLAKLPIKLEDLRKELLNVKGIG 124
Query: 509 LKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYL 568
++ + + L L F VD RI RLG + + ++ H+ E E++ K
Sbjct: 125 KETADSILLYALDRPIFVVDAYTKRIFSRLGVIEGGEEYDEIR-HIFE-----ENLPK-- 176
Query: 569 WPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
D + E H ++ GK +C K P C CP+ C +
Sbjct: 177 -------DLKIYKEYHALIVELGKHYCKKRNPACEKCPLSDLCDY 214
>gi|51892440|ref|YP_075131.1| endonuclease III [Symbiobacterium thermophilum IAM 14863]
gi|51856129|dbj|BAD40287.1| endonuclease III [Symbiobacterium thermophilum IAM 14863]
Length = 232
Score = 60.5 bits (145), Expect = 5e-06, Method: Composition-based stats.
Identities = 42/151 (27%), Positives = 63/151 (41%), Gaps = 18/151 (11%)
Query: 477 LVRDH-GSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIA 535
L+RD G+V LE LR P D+ +L+S G+G+K+ CV L L FP D + R+
Sbjct: 91 LLRDRFGAVTLEPLRQWPDDECLAFLMSLPGMGMKTALCVMLYGLDRPVFPADAHCIRVL 150
Query: 536 VRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFC 595
R+G + + Q L + P Y LH ++ G+ C
Sbjct: 151 KRMGVIDARLAHRPAQRELARIVP-----------------GHLGYVLHVNLVAHGQQIC 193
Query: 596 TKSKPNCNACPMRGECRHFASAFASSRLALP 626
T P C C + C +A ++ LP
Sbjct: 194 TARCPRCAECVVANYCLLGEAAQQAAEGQLP 224
>gi|212526396|ref|XP_002143355.1| HhH-GPD family base excision DNA repair protein [Talaromyces
marneffei ATCC 18224]
gi|210072753|gb|EEA26840.1| HhH-GPD family base excision DNA repair protein [Talaromyces
marneffei ATCC 18224]
Length = 449
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 79/210 (37%), Gaps = 63/210 (30%)
Query: 437 KDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRL------------------- 477
K S+DW AVR A +N++ +K G+ + IK LN +
Sbjct: 232 KGSVDWNAVRVAPINEVFEAMKSGGLATTKSKYIKGILNMVYEENLARKAAHLKSEEEPG 291
Query: 478 --------------------VRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRL 517
+ D + L+W+ + ++A L+ + G+G K+ CV L
Sbjct: 292 KPGPVGAEHESKAQKEVEIALTDENVLSLDWIHALDKEEAMLELIKYPGIGPKTAACVVL 351
Query: 518 LTLHHLAFPVDTNVGRIAVRLGWVP---LQPLPESLQLHLLELYPVLESIQKYLWPRLCK 574
L F VDT++ RI LGW+P + + E + LE+ +
Sbjct: 352 FCLQRPCFAVDTHIFRICKWLGWLPSSDTKRVTEIMAFSHLEV----------------R 395
Query: 575 LDQRTLYELHYQMITFGKVFCTKSKPNCNA 604
+ Y LH +I G KS P C A
Sbjct: 396 IPDHLKYPLHQLLIRHG-----KSCPRCRA 420
>gi|448613277|ref|ZP_21663157.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Haloferax mucosum ATCC BAA-1512]
gi|445740174|gb|ELZ91680.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Haloferax mucosum ATCC BAA-1512]
Length = 268
Score = 60.1 bits (144), Expect = 5e-06, Method: Composition-based stats.
Identities = 51/178 (28%), Positives = 78/178 (43%), Gaps = 24/178 (13%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGS-VDLE-WLRDVPPDKAKEY 500
E++ AD I + I+ G+ N + I+ ++ + GS D + ++R+ P ++
Sbjct: 90 ESLAAADREGIIDAIRSGGLYNRKSKLIQGVAEDVLTNFGSEADFDRYVREEDPSTVRDR 149
Query: 501 LLSFRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
LL G+G K+ +CV L FPVDT+V RIA RLG + E+++ L P
Sbjct: 150 LLEMNGVGPKTADCVLLFAGGRGGVFPVDTHVHRIARRLGIASVDADHEAVRATLEREVP 209
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGECRH 613
+ C H MI FG+ FCT P C + CPM C
Sbjct: 210 AEK----------CGFG-------HTAMIQFGREFCTARSPVCLDDDDECPMADVCEQ 250
>gi|336264806|ref|XP_003347179.1| hypothetical protein SMAC_05479 [Sordaria macrospora k-hell]
gi|380093873|emb|CCC08838.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 560
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 61/136 (44%), Gaps = 21/136 (15%)
Query: 439 SLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRL------------VRDHG---- 482
S++WE V K+A IK G N A IK L+ + V + G
Sbjct: 371 SINWEKVATEPQEKLAQAIKVSGNGNQKAKNIKLILDMVALEMAQMAREKSVNNGGGEQE 430
Query: 483 -----SVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVR 537
+++L+ + + D+A L+ + G+G+KS CV L L F VDT+V R
Sbjct: 431 VAFPETLNLDHMHTLTKDEAMTKLVRYPGIGIKSAACVTLFCLRKPCFGVDTHVHRFCRW 490
Query: 538 LGWVPLQPLPESLQLH 553
LGWVP + PE H
Sbjct: 491 LGWVPEKANPEDCFRH 506
>gi|315230941|ref|YP_004071377.1| endonuclease III [Thermococcus barophilus MP]
gi|315183969|gb|ADT84154.1| endonuclease III [Thermococcus barophilus MP]
Length = 236
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 60/127 (47%), Gaps = 19/127 (14%)
Query: 494 PDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 553
PD +E L+ G+G K V A PVDT+V RI+ RLG P + PE ++ +
Sbjct: 122 PDMLEE-LVKLPGIGRKCANIVLAYGFGKQAIPVDTHVNRISKRLGLAPPKAPPEKVEEY 180
Query: 554 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
L EL P K LW +Y +++ M+ GK C P C+ CP++ C
Sbjct: 181 LKELIP------KELW----------IY-VNHAMVDHGKAICRPISPRCDECPLKTLC-P 222
Query: 614 FASAFAS 620
+A F S
Sbjct: 223 YAKGFIS 229
>gi|448456097|ref|ZP_21594950.1| HhH-GPD family protein [Halorubrum lipolyticum DSM 21995]
gi|445812932|gb|EMA62918.1| HhH-GPD family protein [Halorubrum lipolyticum DSM 21995]
Length = 233
Score = 60.1 bits (144), Expect = 6e-06, Method: Composition-based stats.
Identities = 47/177 (26%), Positives = 77/177 (43%), Gaps = 20/177 (11%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHG-SVDLEWLRDVPPDKAKEY 500
+EA+ AD +++A TI+ G+ + A RI+ L + + G + L +L + D AKE+
Sbjct: 74 FEAIEAADHDELAETIRVAGLADQKAARIQRALAAIREETGGAYSLAFLDAMATDDAKEW 133
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
L + +G+G K+ V VDT+V R++ R G VP + L EL P
Sbjct: 134 LTAIKGVGPKTASVVLNFHFGKPTMAVDTHVERVSKRFGLVPESASNRAAHDALDELVP- 192
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCN--ACPMRGECRHFA 615
+Y LH +I G+ C+ +C+ C +C A
Sbjct: 193 ----------------DELIYPLHVLLIRHGRTHCSARGADCDNPVCEAHCDCEFCA 233
>gi|448728587|ref|ZP_21710911.1| endonuclease III [Halococcus saccharolyticus DSM 5350]
gi|445796772|gb|EMA47269.1| endonuclease III [Halococcus saccharolyticus DSM 5350]
Length = 272
Score = 60.1 bits (144), Expect = 6e-06, Method: Composition-based stats.
Identities = 48/170 (28%), Positives = 76/170 (44%), Gaps = 24/170 (14%)
Query: 449 DVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDL--EWLRDVPPDKAKEYLLSFRG 506
D +A TI+ G+ N + + R+V ++GS ++ + P+ ++ LL F G
Sbjct: 99 DQPTLAETIQSAGLYNQKSATMIAIAERVVDEYGSAAEFDAFVTEKDPETVRDALLDFSG 158
Query: 507 LGLKSVECVRLLT-LHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQ 565
+G K+ +CV L + FPVDT+V RI RLG P E ++ + + P +
Sbjct: 159 VGPKTADCVLLFSGGREGVFPVDTHVHRIYRRLGIAPSDADHEEVRTVVEDQVPAAK--- 215
Query: 566 KYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGEC 611
C H I FG+ +C+ KP C +ACPM C
Sbjct: 216 -------CGFG-------HTASIQFGREYCSARKPACLDDPDACPMADLC 251
>gi|392410783|ref|YP_006447390.1| putative endonuclease III-like protein [Desulfomonile tiedjei DSM
6799]
gi|390623919|gb|AFM25126.1| putative endonuclease III-like protein [Desulfomonile tiedjei DSM
6799]
Length = 225
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 19/170 (11%)
Query: 439 SLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDH-GSVDLEWLRDVPPDKA 497
+LD A+ + ++A I+ G N+ A R+++F+N LV H GS+D + DV +
Sbjct: 62 ALDPLAIYHSSHEQLAAWIRPAGYYNIKAVRLRNFINYLVERHSGSLDSLFSDDVQVLRT 121
Query: 498 KEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEL 557
LLS +G+G ++ + + L H F +D GR+ R G VP + +Q E
Sbjct: 122 N--LLSIKGIGKETADSMILYAAHKPIFVIDAYTGRVMKRHGIVPYSANYDVMQELFHEN 179
Query: 558 YPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPM 607
PV D + H Q + G +C K P C+ CP+
Sbjct: 180 LPV---------------DVELYNDFHAQFVALGHHYCKKV-PLCHFCPL 213
>gi|344997006|ref|YP_004799349.1| HhH-GPD family protein [Caldicellulosiruptor lactoaceticus 6A]
gi|343965225|gb|AEM74372.1| HhH-GPD family protein [Caldicellulosiruptor lactoaceticus 6A]
Length = 232
Score = 60.1 bits (144), Expect = 6e-06, Method: Composition-based stats.
Identities = 49/163 (30%), Positives = 74/163 (45%), Gaps = 15/163 (9%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
K+A IK G N R+K+F N L R+ S DLE L + ++ LLS +G+G ++
Sbjct: 83 KLAELIKPAGYYNQKTKRLKEFCNFLKREFNS-DLEKLFALDISSLRQVLLSQKGIGFET 141
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
+ + L F VD+ R+ RLG L ES ++ +L + I L P+
Sbjct: 142 ADSIILYGAEKPIFVVDSYTKRLFYRLG------LIESEKISYNDLQAI---IMANLTPQ 192
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
+ E H ++ K C KP CN C +R C +F
Sbjct: 193 -----TKFFNEFHALIVKHCKEICKSKKPICNKCCLRLICNYF 230
>gi|312134533|ref|YP_004001871.1| hhh-gpd family protein [Caldicellulosiruptor owensensis OL]
gi|311774584|gb|ADQ04071.1| HhH-GPD family protein [Caldicellulosiruptor owensensis OL]
Length = 234
Score = 60.1 bits (144), Expect = 6e-06, Method: Composition-based stats.
Identities = 49/165 (29%), Positives = 76/165 (46%), Gaps = 19/165 (11%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
K+A IK G N A R+K+F N L R+ S DLE L + ++ LLS +G+G ++
Sbjct: 84 KLAELIKPAGYYNQKAKRLKEFCNFLKREFNS-DLEKLFALDISSLRKALLSQKGIGFET 142
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
+ + L F VD+ R+ RLG L ES ++ +L ++
Sbjct: 143 ADSIILYGAEKPIFVVDSYTKRLFYRLG------LIESEKISYSDLQAII---------- 186
Query: 572 LCKLDQRTLY--ELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
+ KL +T + E H ++ K C KP CN C +R C +
Sbjct: 187 MAKLTPQTKFFNEFHALIVKHCKEICKSKKPICNKCCLRLICNYL 231
>gi|291288604|ref|YP_003505420.1| endonuclease III [Denitrovibrio acetiphilus DSM 12809]
gi|290885764|gb|ADD69464.1| endonuclease III [Denitrovibrio acetiphilus DSM 12809]
Length = 210
Score = 60.1 bits (144), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 70/169 (41%), Gaps = 27/169 (15%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
AD+ +A IK GM M + I LV +HG +VP D + LL+ G+
Sbjct: 68 ADIEDVAKIIKSTGMYKMKSKNIIGMAKALVENHGG-------EVPQDM--DELLALSGV 118
Query: 508 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 567
G K+ VR VDT+V RI+ R+G PE ++ L +L
Sbjct: 119 GRKTANVVRGNFWQKPGVVVDTHVKRISGRVGLTD-NTTPEKVEKDLEKLIK-------- 169
Query: 568 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFAS 616
+ C R +Y FG+ CT P C C + C+++AS
Sbjct: 170 -GEKQCDWCHRVIY--------FGREICTARSPKCGICGVSHVCKYYAS 209
>gi|392588793|gb|EIW78124.1| DNA glycosylase, partial [Coniophora puteana RWD-64-598 SS2]
Length = 276
Score = 60.1 bits (144), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 68/166 (40%), Gaps = 33/166 (19%)
Query: 453 IANTIKERGMNNMLAGRIKDFLNRLVRDH--GSVDLEWL--RDVPPDKAKEYLLSFRGLG 508
+ IK G+ N A I++ L + H G DL+ L DV ++ L+ + G+G
Sbjct: 119 VVEAIKHGGLANRKARIIQNLLVSVKEAHPEGRYDLQHLLAGDVSDEEVMRSLVQYNGVG 178
Query: 509 LKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHL-LELYPVLESIQKY 567
K+ CV + AF VDT+V RI LGWVP S Q HL L + P L+
Sbjct: 179 PKTAACVLAFCMGRDAFAVDTHVFRITRMLGWVPRHADRVSTQAHLELRVPPELK----- 233
Query: 568 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACP--MRGEC 611
Y LH + G+ C C RGEC
Sbjct: 234 -------------YGLHVMFVKHGRA--------CKGCKNGSRGEC 258
>gi|134082233|emb|CAL00988.1| unnamed protein product [Aspergillus niger]
Length = 475
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 79/203 (38%), Gaps = 56/203 (27%)
Query: 437 KDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGS---VDLEWLRDVP 493
K S+DW+AVR A + + IK G+ ++ + +IK L+ + ++ + L+ RD P
Sbjct: 248 KGSVDWDAVRQAPLKDVFEAIKRGGLADIKSKKIKAILDMVYEENQQRRDMLLKGSRDAP 307
Query: 494 PD------KAKEY--------------------------LLSFRGLGLKSVECVRLLTLH 521
D K+Y L+ + G+G K+ CV L L
Sbjct: 308 QDLIKKSEGGKQYEIACADQHFLSLNHLHSLATEDAMVELVKYPGIGPKTAACVLLFCLQ 367
Query: 522 HLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLY 581
F VDT++ RI LGWVP E LE+ ++ Y
Sbjct: 368 RPCFAVDTHIFRICKWLGWVPSDKATEITAFSHLEV----------------RIPDHLKY 411
Query: 582 ELHYQMITFGKVFCTKSKPNCNA 604
LH +I G KS P C A
Sbjct: 412 SLHQLLIRHG-----KSCPRCRA 429
>gi|385830614|ref|YP_005868427.1| endonuclease III [Lactococcus lactis subsp. lactis CV56]
gi|326406622|gb|ADZ63693.1| endonuclease III [Lactococcus lactis subsp. lactis CV56]
Length = 218
Score = 59.7 bits (143), Expect = 7e-06, Method: Composition-based stats.
Identities = 52/194 (26%), Positives = 78/194 (40%), Gaps = 23/194 (11%)
Query: 419 LRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLV 478
L Q G K P D + + A V +I I+ G+ A I LV
Sbjct: 39 LSAQATDKGVNKATPALFATFPDAQTMSQAKVEEIEKLIRTIGLYKTKAKNILRTSQMLV 98
Query: 479 RDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRL 538
D G + L D+P DK + L + G+G K+ V VDT+V R++ RL
Sbjct: 99 TDFGDL----LPDLPKDK--KVLQTLPGVGRKTANVVLAEAYGIPGIAVDTHVERVSKRL 152
Query: 539 GWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKS 598
VP + ++ L++L P Q+ + H+ +I FG+ CT
Sbjct: 153 DIVPQKATVLEVEEKLMKLIP-----------------QKKWVQAHHHLIFFGRYHCTAK 195
Query: 599 KPNCNACPMRGECR 612
KP C CP+ C+
Sbjct: 196 KPKCADCPVLDYCK 209
>gi|317035622|ref|XP_001396714.2| HhH-GPD family base excision DNA repair protein [Aspergillus niger
CBS 513.88]
Length = 472
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 79/203 (38%), Gaps = 56/203 (27%)
Query: 437 KDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGS---VDLEWLRDVP 493
K S+DW+AVR A + + IK G+ ++ + +IK L+ + ++ + L+ RD P
Sbjct: 245 KGSVDWDAVRQAPLKDVFEAIKRGGLADIKSKKIKAILDMVYEENQQRRDMLLKGSRDAP 304
Query: 494 PD------KAKEY--------------------------LLSFRGLGLKSVECVRLLTLH 521
D K+Y L+ + G+G K+ CV L L
Sbjct: 305 QDLIKKSEGGKQYEIACADQHFLSLNHLHSLATEDAMVELVKYPGIGPKTAACVLLFCLQ 364
Query: 522 HLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLY 581
F VDT++ RI LGWVP E LE+ ++ Y
Sbjct: 365 RPCFAVDTHIFRICKWLGWVPSDKATEITAFSHLEV----------------RIPDHLKY 408
Query: 582 ELHYQMITFGKVFCTKSKPNCNA 604
LH +I G KS P C A
Sbjct: 409 SLHQLLIRHG-----KSCPRCRA 426
>gi|448652011|ref|ZP_21681024.1| endonuclease III [Haloarcula californiae ATCC 33799]
gi|445769414|gb|EMA20488.1| endonuclease III [Haloarcula californiae ATCC 33799]
Length = 238
Score = 59.7 bits (143), Expect = 7e-06, Method: Composition-based stats.
Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 13/161 (8%)
Query: 399 SKSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDW-EAVRCADVNKIANTI 457
S++ S + S+ +D GG+ E DS D A+ AD ++A TI
Sbjct: 63 SQNTSDKASQSAHDDL-------MARYGGGEDANSEGDIDSTDLARALADADQPELAETI 115
Query: 458 KERGMNNMLAGRIKDFLNRLVRDHGS---VDLEWLRDVPPDKAKEYLLSFRGLGLKSVEC 514
G+ N + RI R+ ++G D ++RD +K + LL G+G K+ +C
Sbjct: 116 SSAGLYNQKSERIIALAQRICEEYGGEAGFD-AFVRDSDSEKVRSTLLDMNGVGPKTADC 174
Query: 515 VRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHL 554
V L FPVDT+V RIA R+G P E+++ +L
Sbjct: 175 VLLFAGGRGGVFPVDTHVHRIARRIGLAPADAAHETVRAYL 215
>gi|167043370|gb|ABZ08073.1| putative HhH-GPD superfamily base excision DNA repair protein
[uncultured marine crenarchaeote HF4000_ANIW141O9]
Length = 217
Score = 59.7 bits (143), Expect = 7e-06, Method: Composition-based stats.
Identities = 51/178 (28%), Positives = 80/178 (44%), Gaps = 36/178 (20%)
Query: 446 RCADVNKIANTIKERGMNNMLAGRIKDFLNR-LVRDHGSV--DLEWLRDVPPDKAKEYLL 502
+ DV KI IK G ++ + RI + N L + HG V D++ L ++P
Sbjct: 73 KAKDVEKI---IKSVGFYHVKSRRIIEVANIILTKYHGKVPADIDKLVEIP--------- 120
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
G+G K+ CV + A PVDT+V RI+ RLG V + PE ++ L + P
Sbjct: 121 ---GVGRKTANCVLVYAFEKPAIPVDTHVHRISNRLGLVDTKT-PEETEMELRKKVP--- 173
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFAS 620
+KY P ++ + +G+ C P C+ C +R C +F + AS
Sbjct: 174 --KKYWLP------------INNTFVMYGQNICKPISPMCSVCKIRNSCNYFKTKNAS 217
>gi|350636184|gb|EHA24544.1| hypothetical protein ASPNIDRAFT_129349 [Aspergillus niger ATCC
1015]
Length = 1031
Score = 59.7 bits (143), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 79/203 (38%), Gaps = 56/203 (27%)
Query: 437 KDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGS---VDLEWLRDVP 493
K S+DW+AVR A + + IK G+ ++ + +IK L+ + ++ + L+ RD P
Sbjct: 817 KGSVDWDAVRQAPLKDVFEAIKRGGLADIKSKKIKAILDMVYEENQQRRDMLLKGSRDAP 876
Query: 494 PD------KAKEY--------------------------LLSFRGLGLKSVECVRLLTLH 521
D K+Y L+ + G+G K+ CV L L
Sbjct: 877 QDLIKKSEGGKQYEIACADQHFLSLNHLHSLATEDAMVELVKYPGIGPKTAACVLLFCLQ 936
Query: 522 HLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLY 581
F VDT++ RI LGWVP E LE+ ++ Y
Sbjct: 937 RPCFAVDTHIFRICKWLGWVPSDKATEITAFSHLEV----------------RIPDHLKY 980
Query: 582 ELHYQMITFGKVFCTKSKPNCNA 604
LH +I G KS P C A
Sbjct: 981 SLHQLLIRHG-----KSCPRCRA 998
>gi|20093633|ref|NP_613480.1| EndoIII-related endonuclease [Methanopyrus kandleri AV19]
gi|19886502|gb|AAM01410.1| Predicted EndoIII-related endonuclease [Methanopyrus kandleri AV19]
Length = 233
Score = 59.7 bits (143), Expect = 8e-06, Method: Composition-based stats.
Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 22/166 (13%)
Query: 448 ADVN--KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFR 505
A+VN + T+++ G+ A IK+ R++ D +DLE + P ++A+ L+
Sbjct: 81 AEVNLKDLVETLRDAGLYRQKAKMIKECCERILAD--GLDLEEIVQKPTEEARRELMRLP 138
Query: 506 GLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQ 565
G+G K+ + V L H PVDT+V R++ RLG + E + V E++
Sbjct: 139 GVGPKTADVVLLFAGGHDVCPVDTHVARVSRRLGLTDSK-----------EYFEVQEAVH 187
Query: 566 KYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
+ + + + H +I FG+ C KP C C +R C
Sbjct: 188 EM-------VPEGERGKAHLALIQFGREICRPRKPQCELCFVRRFC 226
>gi|85114220|ref|XP_964657.1| hypothetical protein NCU02035 [Neurospora crassa OR74A]
gi|10303298|emb|CAC10093.1| conserved hypothetical protein [Neurospora crassa]
gi|28926447|gb|EAA35421.1| predicted protein [Neurospora crassa OR74A]
Length = 572
Score = 59.7 bits (143), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 55/123 (44%), Gaps = 19/123 (15%)
Query: 439 SLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLN-------------------RLVR 479
S++WE V K+A IK G N A IK L+ R V
Sbjct: 378 SINWEKVASEPEEKLAQAIKVSGNGNQKAKHIKLILDMVALEMAQMAMENKGTGGKREVA 437
Query: 480 DHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLG 539
+++L+ + V D+A L+ + G+G+KS CV L L F VDT+V R LG
Sbjct: 438 FSETLNLDHMHTVTKDEAMAKLVQYPGIGIKSAACVTLFCLRMPCFAVDTHVHRFCRWLG 497
Query: 540 WVP 542
WVP
Sbjct: 498 WVP 500
>gi|46128543|ref|XP_388825.1| hypothetical protein FG08649.1 [Gibberella zeae PH-1]
Length = 486
Score = 59.3 bits (142), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 64/157 (40%), Gaps = 39/157 (24%)
Query: 437 KDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLV------------------ 478
K S+DW VR A + I +IK G++ + IK L +
Sbjct: 259 KGSVDWNKVRTAPLPTIVESIKTGGLSQVKGKDIKAILELVYEENTKRREAFLEEKSGGK 318
Query: 479 ---------RDHGSVDLEWLR------------DVPPDKAKEYLLSFRGLGLKSVECVRL 517
+ G DLE L+ + PD+A + L F G+G+K+ CV L
Sbjct: 319 ATGITGAEGKTQGQKDLEILKTDQEILSLDHIHGMVPDEAMQTLTKFPGIGVKTASCVIL 378
Query: 518 LTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHL 554
L +F VDT+V RI+ L W+P + + HL
Sbjct: 379 FCLQQPSFAVDTHVHRISGWLKWMPRKATRDQTFSHL 415
>gi|408388582|gb|EKJ68263.1| hypothetical protein FPSE_11566 [Fusarium pseudograminearum CS3096]
Length = 486
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 60/145 (41%), Gaps = 39/145 (26%)
Query: 437 KDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLV------------------ 478
K S+DW VR A + I +IK G++ + IK L +
Sbjct: 259 KGSVDWNKVRTAPLPTIVESIKTGGLSQVKGKDIKTILELVYEENTKRREAFLEEKSGGK 318
Query: 479 ---------RDHGSVDLEWLR------------DVPPDKAKEYLLSFRGLGLKSVECVRL 517
+ G DLE L+ + PD+A + L F G+G+K+ CV L
Sbjct: 319 ATGLTGAEGKTQGQKDLEILKTDQEILSLDHIHGMVPDEAMQTLTKFPGIGVKTASCVIL 378
Query: 518 LTLHHLAFPVDTNVGRIAVRLGWVP 542
L +F VDT+V RI+ L W+P
Sbjct: 379 FCLQQPSFAVDTHVHRISGWLKWMP 403
>gi|403175797|ref|XP_003334554.2| endonuclease III [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
gi|375171758|gb|EFP90135.2| endonuclease III [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
Length = 465
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 80/177 (45%), Gaps = 38/177 (21%)
Query: 435 HTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPP 494
H KDSL +++R A + +I N I + G A IK + L H S DVP
Sbjct: 160 HLKDSLTVDSLRNASLTEIENCINKVGFWKKKAQYIKLMADDLFLKHES-------DVP- 211
Query: 495 DKAKEYLLSFRGLGLKSVECVRLLTLH-----HLAFPVDTNVGRIAVRLGWVPLQPLPES 549
K + L++ +G+G K + L L +L VDT+V RI+ RLGW+ PE+
Sbjct: 212 -KTLDELVALKGVGPK----MAFLALSNAWAINLGIGVDTHVHRISNRLGWLQTSD-PEA 265
Query: 550 LQLHLLELYPVLESIQKYLWPRLCKLDQRTLY-ELHYQMITFGKVFCTKSKPNCNAC 605
+++L P R L+ E+++ ++ FG+V C P C C
Sbjct: 266 TRINLESWLP------------------RDLFQEINHLLVGFGQVICLPVGPKCEDC 304
>gi|380300663|ref|ZP_09850356.1| endonuclease III [Brachybacterium squillarum M-6-3]
Length = 224
Score = 59.3 bits (142), Expect = 1e-05, Method: Composition-based stats.
Identities = 46/166 (27%), Positives = 70/166 (42%), Gaps = 27/166 (16%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
A+ +A ++ GM A R++ L+RDH VP D+A L + G+
Sbjct: 77 AEQEDLARLLRPLGMGATRAERVRGLAAALLRDHDGA-------VPDDQAA--LEALPGV 127
Query: 508 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 567
G K+ VR + H VDT+VGR+A RLGW P ++ +LE
Sbjct: 128 GRKTAHVVRGVWFGHPLLAVDTHVGRLARRLGWTTASD-PRRIEEDVLE----------- 175
Query: 568 LWPRLCKLD--QRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
C+ D + L ++I G+ CT P C C + +C
Sbjct: 176 ----RCREDGAGADVTGLGLRLILHGRRVCTARAPRCGDCALAADC 217
>gi|255513717|gb|EET89982.1| HhH-GPD family protein [Candidatus Micrarchaeum acidiphilum
ARMAN-2]
Length = 252
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 74/170 (43%), Gaps = 22/170 (12%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKA--KEYLLSFRGLGL 509
++ I+ G A R+K ++ GSV + DKA ++ LLS G+G
Sbjct: 103 RLQKLIRSSGFYRQKAKRLKAVSKHIISSSGSVKAF----LSKDKAALRKELLSMDGIGP 158
Query: 510 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 569
++ + V L F VD RI RL + + LQ H P SI K
Sbjct: 159 ETADSVLLYAAGKRIFVVDAYTKRIMSRLYGTNPKIGYDELQSHFHAELPKSVSIYK--- 215
Query: 570 PRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFA 619
++H Q++ GK +C K+KP C+ CP++G C+++ + A
Sbjct: 216 ------------DMHAQLVELGKNYC-KTKPECSPCPLKGGCKYYKANIA 252
>gi|167628251|ref|YP_001678750.1| base excision repair protein, hhh-gpd family [Heliobacterium
modesticaldum Ice1]
gi|167590991|gb|ABZ82739.1| base excision repair protein, hhh-gpd family [Heliobacterium
modesticaldum Ice1]
Length = 231
Score = 59.3 bits (142), Expect = 1e-05, Method: Composition-based stats.
Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 18/176 (10%)
Query: 440 LDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKE 499
LD A+ A ++A ++ N A R++ F R+V ++G LE L + + ++
Sbjct: 61 LDISALAEAPREQVARLVRSTRYYNQKAERLQGFARRIVDEYGG-RLENLLSLEAGELRK 119
Query: 500 YLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLE-LY 558
LL +G+G ++ +C+ L F VD RI RLG+ + + +Q E L
Sbjct: 120 RLLDIKGIGKETADCIILYGAQQPIFVVDAYTRRIFSRLGYFSEKVGYDEMQAFFAERLE 179
Query: 559 PVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
P L Q+Y H Q+ G +C P+C CP+ C ++
Sbjct: 180 PDLYLFQEY----------------HAQIDGLGNRYCLAKGPSCAECPLGDCCTYY 219
>gi|224113519|ref|XP_002316518.1| predicted protein [Populus trichocarpa]
gi|222865558|gb|EEF02689.1| predicted protein [Populus trichocarpa]
Length = 1312
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 93/198 (46%), Gaps = 25/198 (12%)
Query: 20 SSAFMSLAANFPLNSKQK-PCHGEEITSVIEEPAEYVLDPEDTIEWKEKMSHQPVCDQGS 78
SSAFMSLA+ FPL + C E + VIEEP +L+P D I+W + P+ +Q S
Sbjct: 935 SSAFMSLASLFPLKLRSSGACDRERTSIVIEEPDTCILNPND-IKW----NSNPLYNQSS 989
Query: 79 MTLHGSESSEEREVVSSNNSLESSTSVVSSINESKCKLMNSSEIYPETYNDVLSSPNSLD 138
+T HGS + +S T + E + S E + VLS +S D
Sbjct: 990 VTHHGSAEPHK----------DSETLFI----ERASMVETQSHSLEEEF--VLSQ-DSFD 1032
Query: 139 SSFAPFADGTISSSNSNSDAGDSSNVPTLNSFNGSNSFVELLQMVGSTMLHGNYNHRNGH 198
SS A+G S S SNS+A D + S N SF++LLQM T+L Y G
Sbjct: 1033 SSTVQ-ANGVRSYSGSNSEAEDPA-TGCKPSMNDDLSFMDLLQMESPTLLGEFYGCEGGS 1090
Query: 199 MSSDENSKDEHSQFQTLE 216
+ S+ E Q + L+
Sbjct: 1091 SLFHKESRHEKEQAEDLQ 1108
>gi|406893033|gb|EKD38207.1| hypothetical protein ACD_75C00822G0003 [uncultured bacterium]
Length = 223
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 75/170 (44%), Gaps = 16/170 (9%)
Query: 440 LDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKE 499
+ +E++ V++IA IK G N+ A R+++ L+ ++ +H L+ D A+E
Sbjct: 67 MTYESLSQCGVDEIAQYIKPSGYYNLKARRLRNLLD-MIGNHYDGQLDRFLDDDAQAARE 125
Query: 500 YLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
LL +G+G ++ + + L H F VD R+ R V + +++Q + P
Sbjct: 126 MLLGVKGIGPETADSILLYACGHPIFVVDMYTHRVFSRHNMVDEETDYQTMQAVFMNQLP 185
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRG 609
D E H ++ +C K+ P C+ CP++G
Sbjct: 186 C---------------DAELFNEFHALVVRVAVTYCKKTIPLCDRCPLQG 220
>gi|114704391|ref|ZP_01437299.1| endonuclease III [Fulvimarina pelagi HTCC2506]
gi|114539176|gb|EAU42296.1| endonuclease III [Fulvimarina pelagi HTCC2506]
Length = 222
Score = 58.9 bits (141), Expect = 1e-05, Method: Composition-based stats.
Identities = 46/178 (25%), Positives = 74/178 (41%), Gaps = 27/178 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
+A+ D +A IK G+ N +K L+ E+ R VP + +E L+
Sbjct: 72 DAILALDDEAVAKAIKPCGLYNNKTKSLKKLCTALIE-------EYDRTVP--QTREGLM 122
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
S G+G K + V T VDT+V R++ R+G + ++ L E P
Sbjct: 123 SLPGVGRKCADIVMSFTFGADVIAVDTHVHRVSNRIGLTDAKTADQTAA-QLEENAPA-- 179
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFAS 620
W ++ H+ +I FGK C KP C CP+ CR++ + A+
Sbjct: 180 ------W---------AFHDGHFWLIQFGKAICVSRKPKCETCPVNDLCRYYTATGAA 222
>gi|15673053|ref|NP_267227.1| endonuclease III [Lactococcus lactis subsp. lactis Il1403]
gi|418037871|ref|ZP_12676231.1| DNA-(apurinic or apyrimidinic site) lyase [Lactococcus lactis
subsp. cremoris CNCM I-1631]
gi|12724026|gb|AAK05169.1|AE006340_2 endonuclease III [Lactococcus lactis subsp. lactis Il1403]
gi|354693995|gb|EHE93702.1| DNA-(apurinic or apyrimidinic site) lyase [Lactococcus lactis
subsp. cremoris CNCM I-1631]
Length = 218
Score = 58.9 bits (141), Expect = 1e-05, Method: Composition-based stats.
Identities = 52/194 (26%), Positives = 77/194 (39%), Gaps = 23/194 (11%)
Query: 419 LRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLV 478
L Q G K P D + + A V +I I+ G+ A I LV
Sbjct: 39 LSAQATDKGVNKATPALFATFPDAQTMSQAKVEEIEKLIRTIGLYKTKAKNILRTSQMLV 98
Query: 479 RDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRL 538
D G + L D+P DK + L + G+G K+ V VDT+V R++ RL
Sbjct: 99 TDFGDL----LPDLPKDK--KVLQTLPGVGRKTANVVLAEAYGIPGIAVDTHVERVSKRL 152
Query: 539 GWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKS 598
VP + ++ L++L P Q + H+ +I FG+ CT
Sbjct: 153 DIVPQKATVLEVEEKLMKLIP-----------------QEKWVQAHHHLIFFGRYHCTAK 195
Query: 599 KPNCNACPMRGECR 612
KP C CP+ C+
Sbjct: 196 KPKCADCPVLDYCK 209
>gi|357454617|ref|XP_003597589.1| Repressor of silencing 2b [Medicago truncatula]
gi|355486637|gb|AES67840.1| Repressor of silencing 2b [Medicago truncatula]
Length = 136
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 425 ANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIK-DFLNRLVRDHGS 483
A GK+E+ E T D L WEA+ A+VN+IA K+ L + +LN LV H +
Sbjct: 65 AKAGKREKTEMTMDFLYWEAMSRANVNEIAEHSKKEAWITCLQNLFRVSYLNLLVDAHRA 124
Query: 484 VDLEWLRDVPPD 495
DL WLRDV PD
Sbjct: 125 TDLVWLRDVSPD 136
>gi|374673082|dbj|BAL50973.1| endonuclease III [Lactococcus lactis subsp. lactis IO-1]
Length = 218
Score = 58.9 bits (141), Expect = 1e-05, Method: Composition-based stats.
Identities = 52/194 (26%), Positives = 79/194 (40%), Gaps = 23/194 (11%)
Query: 419 LRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLV 478
L Q G K P D + + A+V +I I+ G+ A I LV
Sbjct: 39 LSAQATDKGVNKATPALFAAFPDAQTMSQANVEEIEKLIRTIGLYKTKAKNILRTSQMLV 98
Query: 479 RDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRL 538
D G + L D+P DK + L + G+G K+ V VDT+V R++ RL
Sbjct: 99 TDFGDL----LPDLPKDK--KVLQTLPGVGRKTANVVLAEAYGIPGIAVDTHVERVSKRL 152
Query: 539 GWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKS 598
VP + ++ L++L P + +Q H+ +I FG+ CT
Sbjct: 153 DIVPQKATVLEVEEKLMQLIPEEKWVQA-----------------HHHLIFFGRYHCTAK 195
Query: 599 KPNCNACPMRGECR 612
KP C CP+ C+
Sbjct: 196 KPKCADCPVLDYCK 209
>gi|448317595|ref|ZP_21507145.1| HhH-GPD family protein [Natronococcus jeotgali DSM 18795]
gi|445602986|gb|ELY56956.1| HhH-GPD family protein [Natronococcus jeotgali DSM 18795]
Length = 271
Score = 58.9 bits (141), Expect = 1e-05, Method: Composition-based stats.
Identities = 54/194 (27%), Positives = 82/194 (42%), Gaps = 28/194 (14%)
Query: 443 EAVRCADVNKIANTIKERGMNN----MLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAK 498
E++ A+ +++A TI G+ N M+ G ++ L G D ++R+ P+ +
Sbjct: 92 ESLADAERSELAETISSAGLYNQKSEMIIGAAEEILEEFGSAAGFDD--FVREEEPEDVR 149
Query: 499 EYLLSFRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEL 557
+ LL G+G K+ +CV L FPVDT+V RI RLG P E ++ L
Sbjct: 150 QRLLEIHGVGPKTADCVLLFASGRGGVFPVDTHVHRIYRRLGIAPPDADHEVVRAVLERE 209
Query: 558 YPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGECRH 613
P + C H I FG+ +CT KP C +ACPM C
Sbjct: 210 VPAAK----------CGFG-------HTASIQFGREYCTARKPACLEDPDACPMADVCEQ 252
Query: 614 FASAFASSRLALPG 627
A+ + P
Sbjct: 253 VGVYPATGEVVDPA 266
>gi|336463475|gb|EGO51715.1| hypothetical protein NEUTE1DRAFT_89368 [Neurospora tetrasperma FGSC
2508]
gi|350297308|gb|EGZ78285.1| DNA glycosylase [Neurospora tetrasperma FGSC 2509]
Length = 381
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 55/123 (44%), Gaps = 19/123 (15%)
Query: 439 SLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHG---------------- 482
S++WE V K+A IK G N A IK L+ + +
Sbjct: 187 SINWEKVASEPEEKLAQAIKVSGNGNQKAKHIKLILDMVALEMAQLAMENNGTGGKREVA 246
Query: 483 ---SVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLG 539
+++L+ + V D+A L+ + G+G+KS CV L L F VDT+V R LG
Sbjct: 247 FPETLNLDHMHTVTKDEAMAKLVQYPGIGIKSAACVTLFCLRMPCFAVDTHVHRFCRWLG 306
Query: 540 WVP 542
WVP
Sbjct: 307 WVP 309
>gi|172057780|ref|YP_001814240.1| endonuclease III [Exiguobacterium sibiricum 255-15]
gi|171990301|gb|ACB61223.1| endonuclease III [Exiguobacterium sibiricum 255-15]
Length = 222
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 26/165 (15%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
A V +I IK G+ A IK +L+ HG +VP D+A L + G+
Sbjct: 68 APVEEIEEKIKRLGLYRNKAKNIKALAEQLLVLHGG-------EVPTDRAG--LEALPGV 118
Query: 508 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 567
G K+ V + AF VDT+V R++ RLG + ++ L++ + ++
Sbjct: 119 GRKTANVVLSVAFDVPAFAVDTHVERVSKRLGICRWKDNVMQVEQTLMKRF------KRE 172
Query: 568 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
W +L H+Q I FG+ C +PNC CP+ CR
Sbjct: 173 RWSKL-----------HHQFIFFGRYHCKAQRPNCLECPLLDMCR 206
>gi|14591284|ref|NP_143362.1| endonuclease III [Pyrococcus horikoshii OT3]
gi|3257923|dbj|BAA30606.1| 222aa long hypothetical endonuclease III [Pyrococcus horikoshii
OT3]
Length = 222
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 52/118 (44%), Gaps = 18/118 (15%)
Query: 494 PDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 553
PDK +E L+ G+G K V A PVDT+V RI+ RLG P PE ++
Sbjct: 112 PDKFEE-LIKLPGIGRKCANIVLAYGFGIPAIPVDTHVYRISRRLGLAPWDASPEEVEER 170
Query: 554 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
L L P E I +++ M+ GK C KP C CP+RG C
Sbjct: 171 LKSLIPREEWIY-----------------VNHAMVDHGKSVCKPIKPRCWECPLRGLC 211
>gi|429192463|ref|YP_007178141.1| endoIII-related endonuclease [Natronobacterium gregoryi SP2]
gi|448325876|ref|ZP_21515254.1| HhH-GPD family protein [Natronobacterium gregoryi SP2]
gi|429136681|gb|AFZ73692.1| putative endoIII-related endonuclease [Natronobacterium gregoryi
SP2]
gi|445613968|gb|ELY67653.1| HhH-GPD family protein [Natronobacterium gregoryi SP2]
Length = 270
Score = 58.5 bits (140), Expect = 2e-05, Method: Composition-based stats.
Identities = 49/166 (29%), Positives = 72/166 (43%), Gaps = 24/166 (14%)
Query: 453 IANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDL--EWLRDVPPDKAKEYLLSFRGLGLK 510
+A TI G+ N + + +V + GS E++ + P+ +E LL RG+G K
Sbjct: 102 LAETISSAGLYNQKSRVLITTAEWVVSEFGSATAFDEFVTEKAPETVRETLLEVRGVGPK 161
Query: 511 SVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 569
+ +CV L FPVDT+V RI RLG E ++ L E+ P
Sbjct: 162 TADCVLLFAGGRTGVFPVDTHVHRIYRRLGIASPDADHEEVRTVLEEVVPA--------- 212
Query: 570 PRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGEC 611
+ C H I FG+ +CT KP C +ACP+ C
Sbjct: 213 -KKCGFG-------HTATIQFGREYCTARKPACLEDPDACPLGDRC 250
>gi|325279570|ref|YP_004252112.1| endonuclease III [Odoribacter splanchnicus DSM 20712]
gi|324311379|gb|ADY31932.1| endonuclease III [Odoribacter splanchnicus DSM 20712]
Length = 212
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 72/179 (40%), Gaps = 32/179 (17%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRD-HGSV--DLEWLRDVPPDKA 497
D +A+ V I + IK N A + + +L RD G V D+E L+ +P
Sbjct: 61 DAKAMAAGTVEDIYHLIKSISYPNNKAKHLHEMAQKLERDFQGKVPEDMELLQTLP---- 116
Query: 498 KEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEL 557
G+G K+ V + H A PVDT+V R++ R+G V P + L++
Sbjct: 117 --------GVGRKTANVVMAVAFHKPAMPVDTHVFRVSNRIGLVNNTKTPLETEKQLVKN 168
Query: 558 YPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFAS 616
P L H+ +I G+ C KP C C +R CR F S
Sbjct: 169 IPA-----------------EILSTAHHWLILHGRYVCLARKPKCEECGIRQWCRFFQS 210
>gi|389844120|ref|YP_006346200.1| endonuclease III [Mesotoga prima MesG1.Ag.4.2]
gi|387858866|gb|AFK06957.1| endonuclease III, DNA-(apurinic or apyrimidinic site) lyase
[Mesotoga prima MesG1.Ag.4.2]
Length = 220
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 71/163 (43%), Gaps = 27/163 (16%)
Query: 453 IANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSV 512
+ + IK GM A RI + +V E V PD +E L++ G+G K+
Sbjct: 71 LYDLIKASGMYRQKAARIINCARMIV--------ESFAGVVPDTLEE-LVTIPGVGRKTA 121
Query: 513 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRL 572
V ++ A VDT+V RIA RLGWV + P+ + L+++ P +W
Sbjct: 122 NIVLNVSFKKEALAVDTHVHRIANRLGWVKTK-TPDDTEFALMKILP------PSIWG-- 172
Query: 573 CKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFA 615
++ M+ FG+ C P CN C + C +F+
Sbjct: 173 ---------PVNGSMVEFGREICRPIGPKCNLCGISQCCEYFS 206
>gi|255994514|ref|ZP_05427649.1| endonuclease III [Eubacterium saphenum ATCC 49989]
gi|255993227|gb|EEU03316.1| endonuclease III [Eubacterium saphenum ATCC 49989]
Length = 211
Score = 58.5 bits (140), Expect = 2e-05, Method: Composition-based stats.
Identities = 53/196 (27%), Positives = 82/196 (41%), Gaps = 27/196 (13%)
Query: 418 SLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRL 477
+L Q K PE K EA+ ADVN + + I GM + + I N+L
Sbjct: 37 ALSAQTTDKSVNKITPELFKAYPTTEALAKADVNDVMDIIHTIGMYKVKSKNIIALANKL 96
Query: 478 VRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVR 537
D+G DVP + E L S G+G K+ VR + + + VDT+V R R
Sbjct: 97 QNDYGG-------DVP--SSYEELESLPGVGRKTANVVRAVGFNIPSLAVDTHVFRTGKR 147
Query: 538 LGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTK 597
+G+ + + ++ L+++ P K W R H+ +I G+ CT
Sbjct: 148 IGFSNGNTV-DKVERDLMKIIP------KKRWIRA-----------HHSLIFHGRNLCTA 189
Query: 598 SKPNCNACPMRGECRH 613
P CN C + C +
Sbjct: 190 RNPKCNLCDIMKYCEY 205
>gi|281491571|ref|YP_003353551.1| endonuclease III [Lactococcus lactis subsp. lactis KF147]
gi|281375289|gb|ADA64802.1| Endonuclease III [Lactococcus lactis subsp. lactis KF147]
Length = 218
Score = 58.5 bits (140), Expect = 2e-05, Method: Composition-based stats.
Identities = 52/194 (26%), Positives = 77/194 (39%), Gaps = 23/194 (11%)
Query: 419 LRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLV 478
L Q G K P D + + A V +I I+ G+ A I LV
Sbjct: 39 LSAQATDKGVNKATPALFAAFPDAQTMSQAKVEEIEKLIRTIGLYKTKAKNILRTSQMLV 98
Query: 479 RDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRL 538
D G + L D+P DK + L + G+G K+ V VDT+V R++ RL
Sbjct: 99 TDFGDL----LPDLPKDK--KVLQTLPGVGRKTANVVLAEAYGIPGIAVDTHVERVSKRL 152
Query: 539 GWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKS 598
VP + ++ L++L P Q + H+ +I FG+ CT
Sbjct: 153 DIVPQKATVLEVEEKLMKLIP-----------------QEKWVQAHHHLIFFGRYHCTAK 195
Query: 599 KPNCNACPMRGECR 612
KP C CP+ C+
Sbjct: 196 KPKCADCPVLDYCK 209
>gi|146304857|ref|YP_001192173.1| DNA-(apurinic or apyrimidinic site) lyase [Metallosphaera sedula
DSM 5348]
gi|145703107|gb|ABP96249.1| DNA-(apurinic or apyrimidinic site) lyase [Metallosphaera sedula
DSM 5348]
Length = 230
Score = 58.5 bits (140), Expect = 2e-05, Method: Composition-based stats.
Identities = 51/212 (24%), Positives = 91/212 (42%), Gaps = 28/212 (13%)
Query: 419 LRRQVEANGGKKERPEHTKD-SLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRL 477
L + G KK E K+ + E + AD I I++ G++N IK+ ++
Sbjct: 44 LTQNTTDKGAKKAYEELDKEVGITAEGLSRADPEVIKRCIRKVGLHNNKTKVIKEVSTKI 103
Query: 478 VRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVR 537
+ ++G D+ + D+ KA+E L+ G+G K+ + + + + FP+DT++ RI+ R
Sbjct: 104 LNEYGG-DINKVLDLGLPKAREKLVELPGVGKKTADVLLITCRDYPVFPIDTHIFRISKR 162
Query: 538 LGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTK 597
LG + Y + S + ++ H +IT G+ C
Sbjct: 163 LG--------------IDGNYDKVSSFWR-------EVSDNLRLRAHLLLITHGRATCKA 201
Query: 598 SKPNCNACPMRGECRHFASAFASSRLALPGPE 629
KP C+ C + C ++A S GPE
Sbjct: 202 IKPKCDTCVLNDCCEYYARLRGSQ-----GPE 228
>gi|330834042|ref|YP_004408770.1| DNA-(apurinic or apyrimidinic site) lyase [Metallosphaera cuprina
Ar-4]
gi|329566181|gb|AEB94286.1| DNA-(apurinic or apyrimidinic site) lyase [Metallosphaera cuprina
Ar-4]
Length = 224
Score = 58.5 bits (140), Expect = 2e-05, Method: Composition-based stats.
Identities = 47/170 (27%), Positives = 78/170 (45%), Gaps = 29/170 (17%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
AD+ I IK G+ N + I++ L R +++ D+ L DV P+ A++ L +G+
Sbjct: 75 ADLEVIKFCIKSIGLYNNKSITIRE-LARFIQETYHGDINKLLDVDPELARKELTRIKGI 133
Query: 508 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 567
G K+V+ V L + FPVDT++ RI+ RLG + Y V+ K
Sbjct: 134 GNKTVDVVLLTCKGYKTFPVDTHIFRISKRLG--------------IKGNYKVVSEFWK- 178
Query: 568 LWPRLCKLDQRTLYEL---HYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
++Y+ H +IT G+ C P C +C + CR++
Sbjct: 179 ----------NSVYDTLNAHLILITHGRKTCKAINPKCESCMINDCCRYY 218
>gi|345870606|ref|ZP_08822557.1| HhH-GPD family protein [Thiorhodococcus drewsii AZ1]
gi|343921419|gb|EGV32135.1| HhH-GPD family protein [Thiorhodococcus drewsii AZ1]
Length = 247
Score = 58.5 bits (140), Expect = 2e-05, Method: Composition-based stats.
Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 20/180 (11%)
Query: 440 LDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKE 499
L E++ DV +A+ ++ G N+ A R++DF + V G L+ L + D+ ++
Sbjct: 81 LSAESILSLDVEALADALRPAGYFNLKAQRLRDFCSFYVASGG---LDALSRIETDRLRD 137
Query: 500 YLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
LL+ +G+G ++ + + L F VD R+ RLG QL E Y
Sbjct: 138 QLLAVKGIGPETADDMLLYAFDRPVFVVDAYTRRLFSRLG-----------QLSGDEGYE 186
Query: 560 -VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAF 618
+ + + L P D L E H ++ K C P C+ C +R +C AF
Sbjct: 187 GIRAAFEAVLGP-----DVAMLKEYHALLVRHAKEACRSRHPRCSTCSLRSDCPAGLDAF 241
>gi|448377863|ref|ZP_21560559.1| DNA-(apurinic or apyrimidinic site) lyase, partial [Halovivax
asiaticus JCM 14624]
gi|445655807|gb|ELZ08652.1| DNA-(apurinic or apyrimidinic site) lyase, partial [Halovivax
asiaticus JCM 14624]
Length = 153
Score = 58.2 bits (139), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/129 (31%), Positives = 62/129 (48%), Gaps = 22/129 (17%)
Query: 488 WLRDVPPDKAKEYLLSFRGLGLKSVECVRLLT-LHHLAFPVDTNVGRIAVRLGWVPLQPL 546
++R+ P ++ LLS G+G K+ +CV L FPVDT+V RI+ RLG P
Sbjct: 23 YVRETEPATVRDELLSVHGVGPKTADCVLLFAGGQDGVFPVDTHVHRISRRLGIAP---- 78
Query: 547 PESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC---- 602
PE+ + V E+++ + C H MI FG+ +C+ KP C
Sbjct: 79 PEA------DHEGVREALEAAVPGPKCGFG-------HTAMIQFGREYCSARKPACLDGP 125
Query: 603 NACPMRGEC 611
ACP+ +C
Sbjct: 126 EACPLAADC 134
>gi|239947055|ref|ZP_04698808.1| endonuclease III [Rickettsia endosymbiont of Ixodes scapularis]
gi|239921331|gb|EER21355.1| endonuclease III [Rickettsia endosymbiont of Ixodes scapularis]
Length = 212
Score = 58.2 bits (139), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 19/127 (14%)
Query: 494 PDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 553
P+ KE L+ G+G K+ V VDT+V R+A R+G+ PE ++
Sbjct: 105 PNDFKE-LVKLPGVGRKTANVVLNCLFGMPTMAVDTHVFRVAKRIGFAKGNS-PEIVEKE 162
Query: 554 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
LL++ +D++ L HY +I G+ C KP+C+ CP++ C +
Sbjct: 163 LLQI-----------------IDEKWLTHAHYWLILHGRYICKARKPDCDICPIKEYCEY 205
Query: 614 FASAFAS 620
+ +AF+S
Sbjct: 206 YINAFSS 212
>gi|342873258|gb|EGU75465.1| hypothetical protein FOXB_14013 [Fusarium oxysporum Fo5176]
Length = 552
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 60/146 (41%), Gaps = 41/146 (28%)
Query: 437 KDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLV------------------ 478
K S+DW VR A + I +IK G+ + IK L LV
Sbjct: 324 KGSVDWNKVRVAPLPTIVESIKTGGLAQVKGKDIKAILE-LVHEENTKRREAFMQEKKGG 382
Query: 479 ----------RDHGSVDLEWLR------------DVPPDKAKEYLLSFRGLGLKSVECVR 516
+ G DLE L+ + PD+A + L F G+G+K+ CV
Sbjct: 383 NLSGITGADNKTQGQKDLEILKTEQDILSLDHIHGMAPDEAMQTLTKFPGIGVKTASCVI 442
Query: 517 LLTLHHLAFPVDTNVGRIAVRLGWVP 542
L L +F VDT+V RI+ L W+P
Sbjct: 443 LFCLQQPSFAVDTHVHRISGWLKWIP 468
>gi|398380961|ref|ZP_10539074.1| endonuclease III [Rhizobium sp. AP16]
gi|397720025|gb|EJK80586.1| endonuclease III [Rhizobium sp. AP16]
Length = 259
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 71/162 (43%), Gaps = 27/162 (16%)
Query: 451 NKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLK 510
++I + IK G+ A + +L+RD +VP + +E L++ G+G K
Sbjct: 99 DRIRDYIKTIGLYRNKAKNVVALSEKLLRDFDG-------EVP--QTREELMTLPGVGRK 149
Query: 511 SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP 570
+ V + H VDT+V RIA RL P + P+ ++ LL++ P
Sbjct: 150 TANVVMSMAFGHATLAVDTHVFRIANRLLLAPGK-TPDEVEQRLLKVIP----------- 197
Query: 571 RLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
DQ LY H+ +I G+ C KP C C + CR
Sbjct: 198 -----DQ-YLYHAHHWLILHGRYVCKARKPECERCVIADLCR 233
>gi|325958693|ref|YP_004290159.1| DNA-(apurinic or apyrimidinic site) lyase [Methanobacterium sp.
AL-21]
gi|325330125|gb|ADZ09187.1| DNA-(apurinic or apyrimidinic site) lyase [Methanobacterium sp.
AL-21]
Length = 216
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 78/172 (45%), Gaps = 27/172 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
E + A ++ IK+ G ++ A R+++ ++R++ + ++ VP D A+ LL
Sbjct: 63 EEIANAPTEEVEKLIKKSGFYHVKASRVRE-VSRIIHE------DYNDTVPEDMAE--LL 113
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
S G+G K+ CV + H A PVD +V RI+ R+G V P+ + L+++ P
Sbjct: 114 SLPGVGRKTANCVLVYGFHKDAIPVDVHVHRISNRIGLVN-TGTPDETEEKLMKIVP--- 169
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
K W L L + FG+ C P CP+ C ++
Sbjct: 170 ---KKFWLPLNDL-----------FVQFGQTICKPIGPKHEICPIAEYCDYY 207
>gi|448473653|ref|ZP_21601795.1| HhH-GPD family protein [Halorubrum aidingense JCM 13560]
gi|445819165|gb|EMA69014.1| HhH-GPD family protein [Halorubrum aidingense JCM 13560]
Length = 232
Score = 58.2 bits (139), Expect = 2e-05, Method: Composition-based stats.
Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 20/176 (11%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHG-SVDLEWLRDVPPDKAKE 499
D+ A+ AD +++A TI+ G+ + A RI+ L + + G + L +L + D AK
Sbjct: 73 DFAAIEAADHDELAETIRVAGLADQKAARIQRALAAIREETGGAYSLAFLDAMATDAAKA 132
Query: 500 YLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
+L +G+G K+ V VDT+V R++ R G VP ++ L E+ P
Sbjct: 133 WLTDIKGVGPKTASVVLNFHFGKPTMAVDTHVERVSKRFGLVPASASNQAAHNRLDEIVP 192
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCN--ACPMRGECRH 613
+Y LH +I G+ C+ +C+ C +C +
Sbjct: 193 -----------------DELIYPLHVLLIRHGREHCSARGADCDNPVCATYCDCEY 231
>gi|435848105|ref|YP_007310355.1| putative endoIII-related endonuclease [Natronococcus occultus SP4]
gi|433674373|gb|AGB38565.1| putative endoIII-related endonuclease [Natronococcus occultus SP4]
Length = 270
Score = 58.2 bits (139), Expect = 2e-05, Method: Composition-based stats.
Identities = 51/170 (30%), Positives = 73/170 (42%), Gaps = 28/170 (16%)
Query: 451 NKIANTIKERGMNN----MLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRG 506
+++A TI G+ N M+ G ++ L G D ++R+ P+ +E LL G
Sbjct: 100 SELAETISSAGLYNQKSEMIIGAAEEILAEFESAAGFDD--FVREAAPEGVRERLLEIHG 157
Query: 507 LGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQ 565
+G K+ +CV L FPVDT+V RI RLG P E ++ L P +
Sbjct: 158 VGPKTADCVLLFAGGRGGVFPVDTHVHRIYRRLGVAPPDADHEDVRAVLEREVPAAK--- 214
Query: 566 KYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGEC 611
C H I FG+ +CT KP C +ACPM C
Sbjct: 215 -------CGFG-------HTASIQFGREYCTARKPACLEDPDACPMGDVC 250
>gi|390961830|ref|YP_006425664.1| hypothetical protein CL1_1673 [Thermococcus sp. CL1]
gi|390520138|gb|AFL95870.1| hypothetical protein CL1_1673 [Thermococcus sp. CL1]
Length = 238
Score = 58.2 bits (139), Expect = 2e-05, Method: Composition-based stats.
Identities = 49/174 (28%), Positives = 77/174 (44%), Gaps = 32/174 (18%)
Query: 446 RCADVNKIANT--------IKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKA 497
R D+ IANT ++ERG+ G K +V+ + E+ VP D
Sbjct: 76 RYRDIETIANTPVEEMQRFLRERGV-----GLWKTKGEWIVKASRIILEEYGGKVPDDIH 130
Query: 498 KEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEL 557
+ L+ G+G K V A PVDT+V RI+ RLG P + PE ++ +L EL
Sbjct: 131 E--LMKLPGIGRKCANIVLAYGFGKQAIPVDTHVNRISKRLGLAPPRVPPEKVEEYLREL 188
Query: 558 YPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
P +K+++ +++ M+ GK C +P C CP++ C
Sbjct: 189 IPR----EKWIY-------------VNHAMVDHGKNICNPIRPKCGECPLKELC 225
>gi|291294869|ref|YP_003506267.1| endonuclease III [Meiothermus ruber DSM 1279]
gi|290469828|gb|ADD27247.1| endonuclease III [Meiothermus ruber DSM 1279]
Length = 235
Score = 58.2 bits (139), Expect = 2e-05, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 69/155 (44%), Gaps = 27/155 (17%)
Query: 457 IKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVR 516
IK G+ A I RLV HG +VP DKAK L + G+G K+ V
Sbjct: 102 IKTIGLYRSKARNIVLLARRLVEQHGG-------EVPVDKAK--LRALPGVGWKTATVVL 152
Query: 517 LLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLD 576
VDT++ R+A RLG + Q PE + L L+P +K+++
Sbjct: 153 GAAFGVPGIAVDTHLTRLAARLG-LSAQKDPEKIGGDLERLFPK----EKWVF------- 200
Query: 577 QRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
+H+ +I FG+ CT KP C CP+ +C
Sbjct: 201 ------VHHALILFGRYRCTARKPQCPGCPLYDDC 229
>gi|389690704|ref|ZP_10179597.1| putative endoIII-related endonuclease [Microvirga sp. WSM3557]
gi|388588947|gb|EIM29236.1| putative endoIII-related endonuclease [Microvirga sp. WSM3557]
Length = 255
Score = 58.2 bits (139), Expect = 2e-05, Method: Composition-based stats.
Identities = 46/172 (26%), Positives = 73/172 (42%), Gaps = 14/172 (8%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
DW A+ A ++ TI+ A R++ L + HGS+ L++L +P D+A+ +
Sbjct: 66 DWRAMMDAPTEEVEETIQGVTWPEQKAPRLQAVLRAIEERHGSLSLDFLDTMPVDEARAW 125
Query: 501 LLSFRGLGLKSVECVRLLT-LHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
L S G+G K+ V + L A PVD++ R+A R G +P L L P
Sbjct: 126 LESIPGVGPKTSAAVLSFSKLRKAALPVDSHHHRVAQRTGLIPQSTAVGPSHAVLAALLP 185
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
D + +Y+ H M+ G+ C P C C + C
Sbjct: 186 E-------------DWDAQQVYDHHEVMMLHGQRCCFFKSPACERCAILDLC 224
>gi|282165629|ref|YP_003358014.1| putative endonuclease III [Methanocella paludicola SANAE]
gi|282157943|dbj|BAI63031.1| putative endonuclease III [Methanocella paludicola SANAE]
Length = 293
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 79/178 (44%), Gaps = 18/178 (10%)
Query: 434 EHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVP 493
+H + +D + AD ++ I G A I + +++ G LEW++ V
Sbjct: 122 QHRYNGIDVHKMAGADKKELEELIHYSGPYK--AAYIIECSRQIIERWGG-SLEWMKKVS 178
Query: 494 PDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 553
++A+E LLS G+G K+ +CV L +L H PVDT++ R++ RLG E+ +
Sbjct: 179 TEEAREALLSLYGVGPKTADCVLLFSLGHSVTPVDTHICRVSQRLGLSTSTGDSEAAK-- 236
Query: 554 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
V E ++K R H +I G+ FC P + CP+ C
Sbjct: 237 ----RKVKEDLEK---------KHRIPGMAHLLIINLGRDFCKALVPLHHICPVEDIC 281
>gi|14520880|ref|NP_126355.1| endonuclease III [Pyrococcus abyssi GE5]
gi|5458097|emb|CAB49586.1| nth endonuclease III [Pyrococcus abyssi GE5]
gi|380741424|tpe|CCE70058.1| TPA: endonuclease III [Pyrococcus abyssi GE5]
Length = 222
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 60/137 (43%), Gaps = 18/137 (13%)
Query: 475 NRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRI 534
+ + + + LE + PDK +E L+ G+G K V A PVDT+V RI
Sbjct: 93 GKWIVETSRIILEKYKGRVPDKFEE-LIKLPGIGRKCANIVLAYGFGIPAIPVDTHVYRI 151
Query: 535 AVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVF 594
+ RLG P PE ++ L EL P E I +++ M+ GK
Sbjct: 152 SRRLGLAPWDASPEEVEERLKELIPREEWIY-----------------VNHAMVDHGKSV 194
Query: 595 CTKSKPNCNACPMRGEC 611
C KP C+ CP++ C
Sbjct: 195 CRPIKPRCDECPLKELC 211
>gi|337286496|ref|YP_004625969.1| HhH-GPD family protein [Thermodesulfatator indicus DSM 15286]
gi|335359324|gb|AEH45005.1| HhH-GPD family protein [Thermodesulfatator indicus DSM 15286]
Length = 217
Score = 57.8 bits (138), Expect = 3e-05, Method: Composition-based stats.
Identities = 45/158 (28%), Positives = 73/158 (46%), Gaps = 18/158 (11%)
Query: 453 IANTIKERGMNNMLAGRIKDFLNRLVRD-HGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
+A I+ G + A R+K+F++ LV + HG +LE L + +KA+E LL +G+G ++
Sbjct: 74 LAKLIRPAGYFRVKAKRLKNFVHLLVEEYHG--ELEALFSLGLEKAREKLLLVKGIGPET 131
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
+ + L + F +D RI +R G E LQ ++ P
Sbjct: 132 ADSMLLYAGNLPIFVIDAYTRRILLRHGLAHEDMSYEDLQSLFMKNLPK----------- 180
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRG 609
D + E H ++ GK FC KP C CP++G
Sbjct: 181 ----DVKLFNEYHALLVACGKNFCRPKKPLCEECPLKG 214
>gi|210623502|ref|ZP_03293847.1| hypothetical protein CLOHIR_01797 [Clostridium hiranonis DSM 13275]
gi|210153560|gb|EEA84566.1| hypothetical protein CLOHIR_01797 [Clostridium hiranonis DSM 13275]
Length = 213
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 68/163 (41%), Gaps = 27/163 (16%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
+I IK G+ A +IK L D+ S +VP + E L+ G+G K+
Sbjct: 73 EIGEMIKTCGLYKSKAKKIKMTSEILYNDYNS-------EVP--DSLEELIKLPGVGRKT 123
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
V H A PVDT+V RI R+G V PE + L+++ P K W +
Sbjct: 124 AGVVLSNAFGHPAIPVDTHVFRIVNRIGIVETST-PEKTEFELMKVLP------KERWSK 176
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
H+ I G+ C KP C CP++ C +F
Sbjct: 177 A-----------HHLFIFLGRRMCKARKPECTDCPIKKHCNYF 208
>gi|257388060|ref|YP_003177833.1| HhH-GPD family protein [Halomicrobium mukohataei DSM 12286]
gi|257170367|gb|ACV48126.1| HhH-GPD family protein [Halomicrobium mukohataei DSM 12286]
Length = 236
Score = 57.8 bits (138), Expect = 3e-05, Method: Composition-based stats.
Identities = 45/164 (27%), Positives = 74/164 (45%), Gaps = 18/164 (10%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHG-SVDLEWLRDVPPDKAKE 499
D+ A+ AD +++A TI+ G+ + A RI+ L + + G + L +L +P +AK
Sbjct: 74 DFAAIEAADHDELAETIRVAGLPDQKAARIQRALTAIREETGGAYSLAFLDALPTAEAKA 133
Query: 500 YLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
+L +G+G K+ V VDT+V R++ R G VP E L + P
Sbjct: 134 WLTDIKGVGPKTASVVLNFHFGKPTMAVDTHVERVSKRFGLVPEDASNERAHDALDAVVP 193
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCN 603
D+ T Y LH +I G+ C+ P+C+
Sbjct: 194 ----------------DELT-YPLHVLLIRHGRTHCSARNPDCD 220
>gi|312792801|ref|YP_004025724.1| hhh-gpd family protein [Caldicellulosiruptor kristjanssonii 177R1B]
gi|312179941|gb|ADQ40111.1| HhH-GPD family protein [Caldicellulosiruptor kristjanssonii 177R1B]
Length = 232
Score = 57.8 bits (138), Expect = 3e-05, Method: Composition-based stats.
Identities = 47/163 (28%), Positives = 74/163 (45%), Gaps = 15/163 (9%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
K+A +K G N R+K+F N L ++ S DLE L + ++ LLS +G+G ++
Sbjct: 83 KLAELVKPAGYYNQKTKRLKEFCNFLKKEFNS-DLEKLFALDISSLRQVLLSQKGIGFET 141
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
+ + L F VD+ R+ RLG L ES ++ +L + I L P+
Sbjct: 142 ADSIILYGAEKPIFVVDSYTKRLFYRLG------LIESEKISYNDLQAI---IMANLTPQ 192
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
+ E H ++ K C KP CN C +R C +F
Sbjct: 193 -----TKFFNEFHALIVKHCKEICKSKKPICNKCCLRLICNYF 230
>gi|125624307|ref|YP_001032790.1| endonuclease III [Lactococcus lactis subsp. cremoris MG1363]
gi|389854667|ref|YP_006356911.1| endonuclease III [Lactococcus lactis subsp. cremoris NZ9000]
gi|124493115|emb|CAL98079.1| putative endonuclease III (DNA repair) [Lactococcus lactis subsp.
cremoris MG1363]
gi|300071089|gb|ADJ60489.1| putative endonuclease III (DNA repair) [Lactococcus lactis subsp.
cremoris NZ9000]
Length = 218
Score = 57.8 bits (138), Expect = 3e-05, Method: Composition-based stats.
Identities = 52/194 (26%), Positives = 78/194 (40%), Gaps = 23/194 (11%)
Query: 419 LRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLV 478
L Q G K P D +A+ A V +I I+ G+ A I LV
Sbjct: 39 LSAQATDKGVNKATPALFAAFPDAQAMSQAKVEEIEALIRTIGLYKTKAKNILRTSQMLV 98
Query: 479 RDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRL 538
D G + L D+P DK + L + G+G K+ V VDT+V R++ RL
Sbjct: 99 ADFGGI----LPDLPKDK--KLLQTLPGVGRKTANVVLAEAYGIPGIAVDTHVERVSKRL 152
Query: 539 GWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKS 598
V + ++ L++L P + +Q H+ +I FG+ CT
Sbjct: 153 DIVAQKATVLEVEEKLMKLIPEDKWVQS-----------------HHHLIFFGRYHCTAK 195
Query: 599 KPNCNACPMRGECR 612
KP C CP+ C+
Sbjct: 196 KPKCAGCPVLDYCK 209
>gi|222087212|ref|YP_002545747.1| endonuclease III [Agrobacterium radiobacter K84]
gi|221724660|gb|ACM27816.1| endonuclease III [Agrobacterium radiobacter K84]
Length = 259
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 71/162 (43%), Gaps = 27/162 (16%)
Query: 451 NKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLK 510
++I + IK G+ A + +L+RD +VP + +E L++ G+G K
Sbjct: 99 DRIRDYIKTIGLYRNKAKNVVALSEKLLRDFDG-------EVP--QTREELMTLPGVGRK 149
Query: 511 SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP 570
+ V + H VDT+V RIA RL P + P+ ++ L+++ P
Sbjct: 150 TANVVMSMAFGHATLAVDTHVFRIANRLLLAPGK-TPDEVEQRLMKVIP----------- 197
Query: 571 RLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
DQ LY H+ +I G+ C KP C C + CR
Sbjct: 198 -----DQ-YLYHAHHWLILHGRYVCKARKPECERCVIADLCR 233
>gi|145590366|ref|YP_001152368.1| HhH-GPD family protein [Pyrobaculum arsenaticum DSM 13514]
gi|145282134|gb|ABP49716.1| HhH-GPD family protein [Pyrobaculum arsenaticum DSM 13514]
Length = 218
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 76/172 (44%), Gaps = 23/172 (13%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
E++R + ++ IK GM A +K + + + E L + D A++ L+
Sbjct: 66 ESLRGISLGELEELIKPAGMYRQRARYLKALADAFITLE--ITPEKLVKMGADAARKLLM 123
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
S G+G K+ + V L L AFPVDT++ RIA R G + E
Sbjct: 124 SLPGVGRKTADVV-LANLGLPAFPVDTHITRIAKRWG-----------------VGSRYE 165
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
I ++ +L K +R L E H ++I FG+ C P C CP+ C F
Sbjct: 166 DISRWFMEQLPK--ERYL-EFHLKLIQFGRDICRARNPRCEECPIGERCPSF 214
>gi|448510854|ref|ZP_21616067.1| HhH-GPD family protein [Halorubrum distributum JCM 9100]
gi|448523661|ref|ZP_21618848.1| HhH-GPD family protein [Halorubrum distributum JCM 10118]
gi|445695608|gb|ELZ47710.1| HhH-GPD family protein [Halorubrum distributum JCM 9100]
gi|445700734|gb|ELZ52725.1| HhH-GPD family protein [Halorubrum distributum JCM 10118]
Length = 233
Score = 57.8 bits (138), Expect = 3e-05, Method: Composition-based stats.
Identities = 46/164 (28%), Positives = 73/164 (44%), Gaps = 18/164 (10%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHG-SVDLEWLRDVPPDKAKE 499
D+ AV AD ++ TI+ G+ + A RI+ L + + G + L +L +P D+AK+
Sbjct: 73 DFAAVESADHEELKETIRVAGLTDQKAARIQRALTAIREETGGAYSLAFLDAMPTDEAKD 132
Query: 500 YLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
+L +G+G K+ V VDT+V R++ R G VP E L E P
Sbjct: 133 WLTEIKGVGPKTASVVLNFHFGKPTMAVDTHVERVSKRFGLVPESASNERAHEALDEQVP 192
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCN 603
D+ T Y LH +I G+ C+ +C+
Sbjct: 193 ----------------DELT-YPLHVLLIRHGREHCSARGADCD 219
>gi|147920603|ref|YP_685600.1| endonuclease III [Methanocella arvoryzae MRE50]
gi|110620996|emb|CAJ36274.1| predicted endonuclease III [Methanocella arvoryzae MRE50]
Length = 307
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 77/183 (42%), Gaps = 24/183 (13%)
Query: 432 RPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRL---VRDHGSVDLEW 488
R +H +D + AD ++ I+ G DF+ R + D LEW
Sbjct: 130 RLQHHYKGIDVYKMASADKKELEELIRTSGPYK------ADFIIRCSQEIIDRWGGSLEW 183
Query: 489 LRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPE 548
+R P +A+E L+S G+G K+ +CV L L H VDT++ R++ R G E
Sbjct: 184 MRTAPTQEAREALMSLYGVGPKTADCVLLFALGHSVVAVDTHICRVSERTGLSLATGDSE 243
Query: 549 SLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMR 608
+ + + E + +K+ P + H +I G+ FC P + CP+
Sbjct: 244 AAKRRVKE-----DLERKHRIPGMA----------HLLIINLGRDFCKAVLPLHHECPVE 288
Query: 609 GEC 611
C
Sbjct: 289 DIC 291
>gi|303246513|ref|ZP_07332792.1| HhH-GPD family protein [Desulfovibrio fructosovorans JJ]
gi|302492223|gb|EFL52098.1| HhH-GPD family protein [Desulfovibrio fructosovorans JJ]
Length = 216
Score = 57.4 bits (137), Expect = 3e-05, Method: Composition-based stats.
Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 18/166 (10%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
EA+ V ++A I+ G + A R+++ L +V + G D+ L D D A+E LL
Sbjct: 63 EALYALPVEELAELIRPAGYFRVKAARLRNLLALIVHELGG-DITALADGGLDAARERLL 121
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
+ +G+G ++ + + L L +F VD RI R P E L+ ++ P
Sbjct: 122 AVKGVGPETADSILLYGLSLPSFVVDAYTARICNRHALAPEDAGYEELRELFMDALP--- 178
Query: 563 SIQKYLWPRLCKLDQRTLY-ELHYQMITFGKVFCTKSKPNCNACPM 607
+ LY E H ++ G +C P C++CP+
Sbjct: 179 -------------EDTALYNEFHALLVRVGNGWCRPRAPRCDSCPL 211
>gi|336421321|ref|ZP_08601480.1| endonuclease III [Lachnospiraceae bacterium 5_1_57FAA]
gi|336001507|gb|EGN31644.1| endonuclease III [Lachnospiraceae bacterium 5_1_57FAA]
Length = 208
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 74/171 (43%), Gaps = 27/171 (15%)
Query: 444 AVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLS 503
A AD+ ++ IK G + A I + +V + +VP K+ E L S
Sbjct: 63 AFASADLKELEQDIKPTGFYHNKAKNIISCMKDIVDKYDG-------EVP--KSLEELTS 113
Query: 504 FRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLES 563
G+G K+ +R H + VDT+V RI+ RLG Q PE ++ L++ P
Sbjct: 114 LAGVGRKTANVIRGNIYHEPSVVVDTHVKRISNRLGLTKNQD-PEKIEQDLMKELPK--- 169
Query: 564 IQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
D LY + Q+ITFG+ CT P C C ++ C+ +
Sbjct: 170 ------------DHWILYNI--QIITFGRTICTARSPRCEECFLQKYCKEY 206
>gi|305664312|ref|YP_003860600.1| HhH-GPD family protein [Ignisphaera aggregans DSM 17230]
gi|304378881|gb|ADM28720.1| HhH-GPD family protein [Ignisphaera aggregans DSM 17230]
Length = 239
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 15/123 (12%)
Query: 489 LRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPE 548
L+++ D A++ LLS G+G K+ + L+ FP+DT++ R+ RLG V E
Sbjct: 126 LKNLSVDDARKALLSIYGIGYKTADVFLLMIYKKPTFPIDTHIMRVLKRLGIV-----HE 180
Query: 549 SLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMR 608
+ E I+K++ + + + L LH +I G++ C P C+ CP+
Sbjct: 181 DMG---------YEDIRKFILG-VVEHNPEELLSLHISLIAHGRMICKARNPRCSECPIN 230
Query: 609 GEC 611
+C
Sbjct: 231 TKC 233
>gi|115375240|ref|ZP_01462505.1| endonuclease III (DNA-(apurinic or apyrimidinic site)lyase)
[Stigmatella aurantiaca DW4/3-1]
gi|310820220|ref|YP_003952578.1| endonuclease III [Stigmatella aurantiaca DW4/3-1]
gi|115367707|gb|EAU66677.1| endonuclease III (DNA-(apurinic or apyrimidinic site)lyase)
[Stigmatella aurantiaca DW4/3-1]
gi|309393292|gb|ADO70751.1| Endonuclease III (DNA-(Apurinic or apyrimidinic site)lyase)
[Stigmatella aurantiaca DW4/3-1]
Length = 237
Score = 57.4 bits (137), Expect = 4e-05, Method: Composition-based stats.
Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 15/174 (8%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLV-RDHGSVDLEWLRDVPPDKAKEY 500
WEAVR A ++ I A R++ L + R G + L++L +P +A+ +
Sbjct: 69 WEAVRDAPCAEVQEAIAPVTWPEQKAPRLQHILREITARRGGDMALDFLGALPVPQARAW 128
Query: 501 LLSFRGLGLKSVECVRLLT-LHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
L S G+G K+ V L + L A PVD++ R+AVRLG + S ++ + +
Sbjct: 129 LESLPGVGPKTSAAVLLFSRLRRPALPVDSHHYRVAVRLGLL-------SARIPVGPSHA 181
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
+L ++ W + +Y+ H ++ G+ C P C CP+ C H
Sbjct: 182 LLAALLPQEW------GAQQVYDHHEVLMLHGQRCCYHQSPACGRCPVLELCPH 229
>gi|398399341|ref|XP_003853090.1| hypothetical protein MYCGRDRAFT_40778 [Zymoseptoria tritici IPO323]
gi|339472972|gb|EGP88066.1| hypothetical protein MYCGRDRAFT_40778 [Zymoseptoria tritici IPO323]
Length = 484
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 59/140 (42%), Gaps = 34/140 (24%)
Query: 437 KDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLN--------RLVRDHGS----- 483
K S+DW+AVR A + + I+ G+ + + I+ L R GS
Sbjct: 234 KGSVDWDAVRTASNHDVFKAIERGGLAKIKSKDIQSILQIAYEENQERKAALTGSAEDPA 293
Query: 484 ---------------------VDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHH 522
+ L+ L + D A ++ F G+GLK+ CV L + H
Sbjct: 294 GAEHAQESEKQDEIEKAEQNVISLDHLHLLSRDDAIRKMVEFPGIGLKTASCVALFCMGH 353
Query: 523 LAFPVDTNVGRIAVRLGWVP 542
+F VDT+V R+ LGWVP
Sbjct: 354 ASFAVDTHVFRLCQYLGWVP 373
>gi|167758647|ref|ZP_02430774.1| hypothetical protein CLOSCI_00987 [Clostridium scindens ATCC 35704]
gi|167663843|gb|EDS07973.1| endonuclease III [Clostridium scindens ATCC 35704]
Length = 208
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 74/171 (43%), Gaps = 27/171 (15%)
Query: 444 AVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLS 503
A AD+ ++ IK G + A I + +V + +VP K+ E L S
Sbjct: 63 AFASADLKELEQDIKPTGFYHNKAKNIISCMKDIVDKYDG-------EVP--KSLEELTS 113
Query: 504 FRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLES 563
G+G K+ +R H + VDT+V RI+ RLG Q PE ++ L++ P
Sbjct: 114 LAGVGRKTANVIRGNIYHEPSVVVDTHVKRISNRLGLTKNQD-PEKIEQDLMKELPK--- 169
Query: 564 IQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
D LY + Q+ITFG+ CT P C C ++ C+ +
Sbjct: 170 ------------DHWILYNI--QIITFGRTICTARSPRCEECFLQKYCKEY 206
>gi|389852800|ref|YP_006355034.1| endonuclease III [Pyrococcus sp. ST04]
gi|388250106|gb|AFK22959.1| endonuclease III [Pyrococcus sp. ST04]
Length = 216
Score = 57.4 bits (137), Expect = 4e-05, Method: Composition-based stats.
Identities = 43/136 (31%), Positives = 61/136 (44%), Gaps = 18/136 (13%)
Query: 476 RLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIA 535
R + + + LE V P+ +E L+ G+G K V A PVDT+V R++
Sbjct: 93 RWIVESTRIILEKYGGVVPNTLEE-LMKLPGIGRKCANIVLAYGFGIPAIPVDTHVNRVS 151
Query: 536 VRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFC 595
RLG VP PE +E I K L P+ LY +++ M+ GK C
Sbjct: 152 KRLGLVPPNATPEK-----------VEEILKKLLPK-----DEWLY-VNHAMVDHGKAVC 194
Query: 596 TKSKPNCNACPMRGEC 611
KP C+ CP+R C
Sbjct: 195 RPIKPKCDECPLRDIC 210
>gi|197124333|ref|YP_002136284.1| DNA-cytosine methyltransferase [Anaeromyxobacter sp. K]
gi|196174182|gb|ACG75155.1| DNA-cytosine methyltransferase [Anaeromyxobacter sp. K]
Length = 657
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 70/173 (40%), Gaps = 11/173 (6%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYL 501
WE + A ++ + G+ + L LV GS L + +E+L
Sbjct: 88 WEELLRAPEREVEAIVHRGGLGKRKTASLVGALQALVDRFGSCTLRPALQWKDEALEEFL 147
Query: 502 LSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 561
S + KS C+ + ++ FPVDT+VGR+ RLG L L+ +
Sbjct: 148 CSLPEISRKSAYCIMMYSMGRSVFPVDTHVGRVLQRLGIYK----GTGFSLEGLDHKQLQ 203
Query: 562 ESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
++ + P L + LH ++ G+ C P C+AC +R C H+
Sbjct: 204 RTLADVVPPNLRR-------SLHINLVLHGREVCKAVAPACDACELRQLCSHY 249
>gi|309775704|ref|ZP_07670702.1| endonuclease III [Erysipelotrichaceae bacterium 3_1_53]
gi|308916543|gb|EFP62285.1| endonuclease III [Erysipelotrichaceae bacterium 3_1_53]
Length = 215
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 68/165 (41%), Gaps = 26/165 (15%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
A + I + I+ G+ A I++ L+ V E ++D L S G+
Sbjct: 64 AQLQDIEDKIRRIGLYRNKAHSIQNLSRSLLDSFDGVVPESMKD---------LTSLAGV 114
Query: 508 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 567
G K+ VR + + VDT+V RI+ RLG +Q E ++ L +++
Sbjct: 115 GRKTANVVRSVCFDIPSIAVDTHVERISKRLGLAKVQDSVEVVEQKLKR------KLKRE 168
Query: 568 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
W R H+ I FG+ FCT P C CP R C+
Sbjct: 169 RWNRA-----------HHLFIFFGRYFCTARNPKCEECPFREFCK 202
>gi|415719736|ref|ZP_11467775.1| Putative EndoIII-related endonuclease [Gardnerella vaginalis 1500E]
gi|388058996|gb|EIK81763.1| Putative EndoIII-related endonuclease [Gardnerella vaginalis 1500E]
Length = 223
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 73/172 (42%), Gaps = 22/172 (12%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRD-HGSVDLEWLRDVPPDKAKE 499
D ++ A V ++ + IK G + A I RL D HG V P + ++
Sbjct: 66 DSRSLSAASVKQVESIIKPLGFYRVKAQHIIALSVRLESDFHGVV---------PSRMED 116
Query: 500 YLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
L S G+G K+ VR FPVDT+V R+ RLGW P+ Y
Sbjct: 117 -LTSLPGVGRKTANVVRGNAFGLPGFPVDTHVIRVTGRLGWRRDCNKPKK--------YA 167
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
ESI+K + D L +++I G+ CT P C +CP++ C
Sbjct: 168 NPESIEKEI---TSYFDPADWTNLSHRLILHGRKICTARNPRCASCPLKTTC 216
>gi|332157727|ref|YP_004423006.1| endonuclease III [Pyrococcus sp. NA2]
gi|331033190|gb|AEC51002.1| endonuclease III [Pyrococcus sp. NA2]
Length = 220
Score = 57.4 bits (137), Expect = 4e-05, Method: Composition-based stats.
Identities = 40/118 (33%), Positives = 51/118 (43%), Gaps = 18/118 (15%)
Query: 494 PDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 553
PDK E LL G+G K V A PVDT+V RI+ RLG P PE ++
Sbjct: 112 PDKFDE-LLKLPGIGRKCANIVLAYGFGIPAIPVDTHVYRISRRLGLAPWDASPEEVEER 170
Query: 554 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
L L P E I +++ M+ GK C +P CN CP+R C
Sbjct: 171 LKSLIPREEWIY-----------------VNHAMVDHGKRICRPVEPRCNECPLRDLC 211
>gi|390938170|ref|YP_006401908.1| HhH-GPD family protein [Desulfurococcus fermentans DSM 16532]
gi|390191277|gb|AFL66333.1| HhH-GPD family protein [Desulfurococcus fermentans DSM 16532]
Length = 234
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 18/123 (14%)
Query: 495 DKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHL 554
++A+ L+ G+G K+ + V L FPVDT++ RI +R+G+ + H+
Sbjct: 125 EEARRLLMELPGVGWKTADVVLLRYFRKPVFPVDTHITRITMRMGFTGSRSYK-----HI 179
Query: 555 LELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
+ S + YL +LH +IT G+ C KP CN C +R CR+
Sbjct: 180 SRFWMDNTSPENYL-------------DLHLYLITHGRRTCRARKPLCNKCVLRDMCRYG 226
Query: 615 ASA 617
A
Sbjct: 227 VDA 229
>gi|418620110|ref|ZP_13182921.1| endonuclease III [Staphylococcus hominis VCU122]
gi|374823673|gb|EHR87668.1| endonuclease III [Staphylococcus hominis VCU122]
Length = 223
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 70/165 (42%), Gaps = 26/165 (15%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
D+ ++ N IK G+ A IK L+ +G VP + L S G+
Sbjct: 68 VDIEELQNDIKSIGLYRNKAKNIKKLCQSLLDQYGG-------QVP--HTHKDLESLAGV 118
Query: 508 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 567
G K+ V + + VDT+V R++ RLG + + ++ L ++ P K
Sbjct: 119 GRKTANVVMSVAFDEPSLAVDTHVERVSKRLGINKWKDNVKQVEERLCDIIP------KE 172
Query: 568 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
W + H+Q+I FG+ C KP C+ CP+ +CR
Sbjct: 173 RWSKS-----------HHQLIFFGRYHCIARKPKCDICPLLEDCR 206
>gi|399519845|ref|ZP_10760636.1| endonuclease III [Pseudomonas pseudoalcaligenes CECT 5344]
gi|399112242|emb|CCH37195.1| endonuclease III [Pseudomonas pseudoalcaligenes CECT 5344]
Length = 212
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 74/173 (42%), Gaps = 27/173 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
EA+ V ++ IK G+ N A + + L+ HGS VP ++ E L
Sbjct: 62 EAIYALGVEGLSEYIKTIGLYNSKAKNVIEACRILIEKHGS-------QVPDNR--EDLE 112
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
+ G+G K+ V LA VDT++ R++ R G P + + E ++ LL+ P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQLAMAVDTHIFRVSNRTGIAPGKNVVE-VEKKLLKFVP--- 168
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFA 615
+ L + H+ +I G+ CT KP C AC + C + A
Sbjct: 169 --------------KDYLLDAHHWLILHGRYVCTARKPRCGACRIEDLCEYKA 207
>gi|423091165|ref|ZP_17079423.1| endonuclease III [Clostridium difficile 70-100-2010]
gi|357555447|gb|EHJ37097.1| endonuclease III [Clostridium difficile 70-100-2010]
Length = 350
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 29/166 (17%)
Query: 450 VNKIANTIKERGMNNMLAGRIKDFLNRLVRDH-GSVDLEWLRDVPPDKAKEYLLSFRGLG 508
+ +I+ IK G+ + +IKD +L + G V PD + E L+ G+G
Sbjct: 206 IEEISKEIKSCGLYKSKSQKIKDTSEQLCELYDGEV---------PD-SLEKLIKLPGVG 255
Query: 509 LKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYL 568
K+ V +H A VDT+V R++ R+G V +P P+ + L+E P K
Sbjct: 256 RKTAGVVLSNAFNHPAIAVDTHVFRVSNRIGIVD-EPNPQKTEFALMETIP------KER 308
Query: 569 WPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
W H+ +I G+ C P C +CP++ +C ++
Sbjct: 309 WSHS-----------HHVLIFHGRRMCKARNPECASCPIKEDCNYY 343
>gi|424814711|ref|ZP_18239889.1| putative EndoIII-related endonuclease [Candidatus Nanosalina sp.
J07AB43]
gi|339758327|gb|EGQ43584.1| putative EndoIII-related endonuclease [Candidatus Nanosalina sp.
J07AB43]
Length = 239
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 78/179 (43%), Gaps = 25/179 (13%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVD---LEWLRDVPPDKA 497
+++ + +DV ++A+TI G+ A R+K L L R+HG + +++L D+ A
Sbjct: 63 NYKEIENSDVGRLADTINPAGLPQTKAQRLKRTLTAL-REHGEKEDYSVDFLGDMEDSNA 121
Query: 498 KEYLLSFRGLGLKSVECVRLLTLHHLA--FPVDTNVGRIAVRLGWVPLQPLPESLQLHLL 555
+E+L +G+G K+ LL H A PVDT+V RI+ R +P + L
Sbjct: 122 QEWLEQIKGIGPKTASV--LLNFHFDADVIPVDTHVERISKRFRLIPFSASNQKAHDLLN 179
Query: 556 ELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
E P I+ H +I GK CT P C ++ C +
Sbjct: 180 ESVP--HDIKN---------------SFHKLVIEHGKNNCTARNPTCGNTKLKKYCSRY 221
>gi|228476057|ref|ZP_04060765.1| endonuclease III [Staphylococcus hominis SK119]
gi|228269880|gb|EEK11360.1| endonuclease III [Staphylococcus hominis SK119]
Length = 223
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 70/165 (42%), Gaps = 26/165 (15%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
D+ ++ N IK G+ A IK L+ +G VP + L S G+
Sbjct: 68 VDIEELQNDIKSIGLYRNKAKNIKKLCQSLLDQYGG-------QVP--HTHKDLESLAGV 118
Query: 508 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 567
G K+ V + + VDT+V R++ RLG + + ++ L ++ P K
Sbjct: 119 GRKTANVVMSVAFDEPSLAVDTHVERVSKRLGINKWKDNVKQVEERLCDIIP------KE 172
Query: 568 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
W + H+Q+I FG+ C KP C+ CP+ +CR
Sbjct: 173 RWSKS-----------HHQLIFFGRYHCIARKPKCDICPLLEDCR 206
>gi|314936413|ref|ZP_07843760.1| endonuclease III [Staphylococcus hominis subsp. hominis C80]
gi|313655032|gb|EFS18777.1| endonuclease III [Staphylococcus hominis subsp. hominis C80]
Length = 223
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 70/165 (42%), Gaps = 26/165 (15%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
D+ ++ N IK G+ A IK L+ +G VP + L S G+
Sbjct: 68 VDIEELQNDIKSIGLYRNKAKNIKKLCQSLLDQYGG-------QVP--HTHKDLESLAGV 118
Query: 508 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 567
G K+ V + + VDT+V R++ RLG + + ++ L ++ P K
Sbjct: 119 GRKTANVVMSVAFDEPSLAVDTHVERVSKRLGINKWKDNVKQVEERLCDIIP------KE 172
Query: 568 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
W + H+Q+I FG+ C KP C+ CP+ +CR
Sbjct: 173 RWSKS-----------HHQLIFFGRYHCIARKPKCDICPLLEDCR 206
>gi|260587425|ref|ZP_05853338.1| endonuclease III [Blautia hansenii DSM 20583]
gi|260542292|gb|EEX22861.1| endonuclease III [Blautia hansenii DSM 20583]
Length = 217
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 79/174 (45%), Gaps = 27/174 (15%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
D +A AD+ ++ IK G + A I R+ + +G +VP ++ E
Sbjct: 60 DMQAFAKADLKELEQDIKPTGFYHNKAKNIIGCAQRICQVYGG-------EVP--RSLED 110
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
L+S G+G K+ +R H + VDT+V RI+ RLG+ + PE ++ L+++ P
Sbjct: 111 LVSLPGVGRKTANVIRGNIFHEPSVVVDTHVKRISKRLGFTKEED-PEKIEQDLMKVLP- 168
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
K W LY + Q+ITFG+ C P C C + C+ +
Sbjct: 169 -----KEHW---------ILYNI--QIITFGRQICFARSPKCEECFLTEYCKEY 206
>gi|452209864|ref|YP_007489978.1| Endonuclease III [Methanosarcina mazei Tuc01]
gi|452099766|gb|AGF96706.1| Endonuclease III [Methanosarcina mazei Tuc01]
Length = 205
Score = 57.0 bits (136), Expect = 5e-05, Method: Composition-based stats.
Identities = 53/165 (32%), Positives = 72/165 (43%), Gaps = 28/165 (16%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
ADV I I++ G + AGRIK+ L+ D+ VP D E LL G+
Sbjct: 63 ADVEDIEELIRDVGFYRVKAGRIKEISRILLEDYNG-------RVPDD--METLLKLPGV 113
Query: 508 GLKSVECVRLLT-LHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQK 566
G K+ CV L A VDT+V RI+ RLG V + PE ++ L +L P QK
Sbjct: 114 GRKTANCVLAHAFLKEDALAVDTHVHRISNRLGLV-VTKNPEETEMELKKLLP-----QK 167
Query: 567 YLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
Y W + L ++ FG+ C P C C + C
Sbjct: 168 Y-WRHVNIL-----------LVKFGQNVCRPISPRCGICVLNDIC 200
>gi|448480701|ref|ZP_21604703.1| HhH-GPD family protein [Halorubrum arcis JCM 13916]
gi|445822018|gb|EMA71793.1| HhH-GPD family protein [Halorubrum arcis JCM 13916]
Length = 233
Score = 57.0 bits (136), Expect = 5e-05, Method: Composition-based stats.
Identities = 46/164 (28%), Positives = 73/164 (44%), Gaps = 18/164 (10%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHG-SVDLEWLRDVPPDKAKE 499
D+ AV AD ++ TI+ G+ + A RI+ L + + G + L +L +P D+AK+
Sbjct: 73 DFAAVESADHEELKETIRVAGLADQKAARIQRALTAIREETGGAYSLAFLDAMPTDEAKD 132
Query: 500 YLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
+L +G+G K+ V VDT+V R++ R G VP E L E P
Sbjct: 133 WLTEIKGVGPKTASVVLNFHFGKPTIAVDTHVERVSKRFGLVPESASNERAHEALDEQVP 192
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCN 603
D+ T Y LH +I G+ C+ +C+
Sbjct: 193 ----------------DELT-YPLHVLLIRHGREHCSARGADCD 219
>gi|255305554|ref|ZP_05349726.1| endonuclease III [Clostridium difficile ATCC 43255]
Length = 405
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 29/166 (17%)
Query: 450 VNKIANTIKERGMNNMLAGRIKDFLNRLVRDH-GSVDLEWLRDVPPDKAKEYLLSFRGLG 508
+ +I+ IK G+ + +IKD +L + G V PD + E L+ G+G
Sbjct: 261 IEEISKEIKSCGLYKSKSQKIKDTSEQLCELYDGEV---------PD-SLEKLIKLPGVG 310
Query: 509 LKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYL 568
K+ V +H A VDT+V R++ R+G V +P P+ + L+E P K
Sbjct: 311 RKTAGVVLSNAFNHPAIAVDTHVFRVSNRIGIVD-EPNPQKTEFALMEAIP------KER 363
Query: 569 WPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
W H+ +I G+ C P C +CP++ +C ++
Sbjct: 364 WSHS-----------HHVLIFHGRRMCKARNPECASCPIKEDCNYY 398
>gi|397772834|ref|YP_006540380.1| HhH-GPD family protein [Natrinema sp. J7-2]
gi|448340522|ref|ZP_21529493.1| HhH-GPD family protein [Natrinema gari JCM 14663]
gi|397681927|gb|AFO56304.1| HhH-GPD family protein [Natrinema sp. J7-2]
gi|445629955|gb|ELY83225.1| HhH-GPD family protein [Natrinema gari JCM 14663]
Length = 276
Score = 57.0 bits (136), Expect = 5e-05, Method: Composition-based stats.
Identities = 54/203 (26%), Positives = 87/203 (42%), Gaps = 25/203 (12%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVR--DHGSVDLEWLRDVPPDKAKEY 500
E++ A+ + +A TI G+ N + + D ++ D S +++D P +E
Sbjct: 92 ESLASAERSTLAETISGAGLYNQKSETLIDTAEWVLAEFDSASAFDAFVKDEEPSVVRET 151
Query: 501 LLSFRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
LLS RG+G K+ +CV L FPVDT+V RI R+G P E+++
Sbjct: 152 LLSVRGVGPKTADCVLLFAGGRGGVFPVDTHVHRIYRRMGIAPPDADHEAVR-------- 203
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGECRHFA 615
E +++ + C H I FG+ +C P C +ACPM C
Sbjct: 204 --EVLERDVPAAKCGFG-------HTATIQFGREYCRARTPACLEDPDACPMADVCEQVG 254
Query: 616 SAFASSRLALPGPEEKAIVSANE 638
A+ + P E A A++
Sbjct: 255 VFPATGEVVDPA-ETPAATEADD 276
>gi|297585115|ref|YP_003700895.1| HhH-GPD family protein [Bacillus selenitireducens MLS10]
gi|297143572|gb|ADI00330.1| HhH-GPD family protein [Bacillus selenitireducens MLS10]
Length = 211
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 70/169 (41%), Gaps = 19/169 (11%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
E +R ++ I+ G M A R++ FL HG D+ L+ V D +E LL
Sbjct: 58 ERIRAMTDEELEERIRPSGFFRMKAQRLRAFLE-WFESHGD-DVRALQQVETDVLREELL 115
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
+G+G ++ + + L L+ F +D RI R+G+ P+
Sbjct: 116 QVKGIGAETADSILLYALYRPVFVIDAYTHRIMNRIGY----QFPKKYN----------- 160
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
Q + L K D+ + H Q + K C K KP C CP+ EC
Sbjct: 161 QAQAFFEEALPK-DEALYNDFHAQFVRHAKEHC-KKKPVCEGCPLEPEC 207
>gi|448501053|ref|ZP_21612062.1| HhH-GPD family protein [Halorubrum coriense DSM 10284]
gi|445695794|gb|ELZ47894.1| HhH-GPD family protein [Halorubrum coriense DSM 10284]
Length = 233
Score = 57.0 bits (136), Expect = 5e-05, Method: Composition-based stats.
Identities = 46/176 (26%), Positives = 73/176 (41%), Gaps = 20/176 (11%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHG-SVDLEWLRDVPPDKAKE 499
D+ A+ AD ++ TI+ G+ + A RI+ L + + G + L +L +P D AK
Sbjct: 73 DFAAIEAADHEELRETIRVAGLPDQKAARIQRSLTAIREETGGAYSLAFLDALPTDDAKA 132
Query: 500 YLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
+L +G+G K+ V VDT+V R++ R G VP E L E P
Sbjct: 133 WLTEIKGVGPKTASVVLNFHFGKPTMAVDTHVERVSKRFGLVPESASNERAHDVLDERVP 192
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCN--ACPMRGECRH 613
+Y LH +I G+ C+ +C+ C +C H
Sbjct: 193 -----------------DELIYPLHVLLIRHGREHCSARNADCDNPVCEAYCDCEH 231
>gi|123505745|ref|XP_001329048.1| HhH-GPD superfamily base excision DNA repair protein [Trichomonas
vaginalis G3]
gi|121911998|gb|EAY16825.1| HhH-GPD superfamily base excision DNA repair protein [Trichomonas
vaginalis G3]
Length = 238
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 74/178 (41%), Gaps = 36/178 (20%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
AD + + IK G AG I + + E D P KE L SF G+
Sbjct: 84 ADYDVVLECIKSVGFAKKKAGYI--------IEAAKICHEKYNDDIPKTLKE-LTSFNGV 134
Query: 508 GLKSVECVRLLTLHH-----LAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
G+K + L + H + VD +V RI+ LGWV + P+ +L L ++ P
Sbjct: 135 GVK----MGTLAMAHCWGEQIGIGVDVHVHRISNLLGWVKTKK-PDDTELALQKILP--- 186
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFAS 620
K +W E+++ ++ FG+ C KP C+ CP++ C AS
Sbjct: 187 ---KEIWS-----------EVNHTLVGFGQTICDAKKPKCDECPIKDTCPALQRGSAS 230
>gi|255099671|ref|ZP_05328648.1| endonuclease III [Clostridium difficile QCD-63q42]
Length = 405
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 18/116 (15%)
Query: 499 EYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY 558
E L+ G+G K+ V +H A VDT+V R++ R+G V +P P+ + L+E
Sbjct: 301 EKLIKLPGVGRKTAGVVLSNAFNHPAIAVDTHVFRVSNRIGIVD-EPNPQKTEFALMEAI 359
Query: 559 PVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
P K W H+ +I G+ C P C +CP++ +C ++
Sbjct: 360 P------KERWSHS-----------HHVLIFHGRRMCKARNPECASCPIKEDCNYY 398
>gi|385805176|ref|YP_005841574.1| HhH-GPD family protein [Fervidicoccus fontis Kam940]
gi|383795039|gb|AFH42122.1| HhH-GPD family protein [Fervidicoccus fontis Kam940]
Length = 225
Score = 57.0 bits (136), Expect = 5e-05, Method: Composition-based stats.
Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 21/173 (12%)
Query: 440 LDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKE 499
LD+ + + ++ I+ G+ A IK L +D + L+ L PP++A+
Sbjct: 70 LDFRKLNSMSLGELEEIIRISGLYKSKAETIKRLAGFLSKDE--LFLKNLCKKPPEEARR 127
Query: 500 YLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
L S +G+G K+ + + + FPVD ++ R+ RL L+
Sbjct: 128 ELTSIKGIGKKTADLFLSVYCNMPLFPVDRHIKRVTERL----------------LDKKM 171
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
E + ++ W + LD+ L E HY++I G+ FC C+ CP+ CR
Sbjct: 172 DYEEVSQF-WREV--LDRNLLKEAHYKLIYVGRKFCRPKGEKCDLCPLADICR 221
>gi|423083243|ref|ZP_17071818.1| endonuclease III [Clostridium difficile 002-P50-2011]
gi|423086615|ref|ZP_17075014.1| endonuclease III [Clostridium difficile 050-P50-2011]
gi|357546324|gb|EHJ28255.1| endonuclease III [Clostridium difficile 050-P50-2011]
gi|357546344|gb|EHJ28274.1| endonuclease III [Clostridium difficile 002-P50-2011]
Length = 350
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 29/166 (17%)
Query: 450 VNKIANTIKERGMNNMLAGRIKDFLNRLVRDH-GSVDLEWLRDVPPDKAKEYLLSFRGLG 508
+ +I+ IK G+ + +IKD +L + G V PD + E L+ G+G
Sbjct: 206 IEEISKEIKSCGLYKSKSQKIKDTSEQLCELYDGEV---------PD-SLEKLIKLPGVG 255
Query: 509 LKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYL 568
K+ V +H A VDT+V R++ R+G V +P P+ + L+E P K
Sbjct: 256 RKTAGVVLSNAFNHPAIAVDTHVFRVSNRIGIVD-EPNPQKTEFALMEAIP------KER 308
Query: 569 WPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
W H+ +I G+ C P C +CP++ +C ++
Sbjct: 309 WSHS-----------HHVLIFHGRRMCKARNPECASCPIKEDCNYY 343
>gi|146306430|ref|YP_001186895.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Pseudomonas mendocina ymp]
gi|421504740|ref|ZP_15951681.1| endonuclease III [Pseudomonas mendocina DLHK]
gi|145574631|gb|ABP84163.1| DNA-(apurinic or apyrimidinic site) lyase [Pseudomonas mendocina
ymp]
gi|400344698|gb|EJO93067.1| endonuclease III [Pseudomonas mendocina DLHK]
Length = 212
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 74/173 (42%), Gaps = 27/173 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
EA+ V ++ IK G+ N A + + L+ HGS VP ++ E L
Sbjct: 62 EAIYALGVEGLSEYIKTIGLYNSKAKNVIEACRILIEKHGS-------QVPDNR--EDLE 112
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
+ G+G K+ V LA VDT++ R++ R G P + + E ++ LL+ P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQLAMAVDTHIFRVSNRTGIAPGKNVVE-VEKKLLKFVP--- 168
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFA 615
+ L + H+ +I G+ CT KP C AC + C + A
Sbjct: 169 --------------KDYLLDAHHWLILHGRYVCTARKPRCGACRIEDLCEYKA 207
>gi|319790406|ref|YP_004152039.1| HhH-GPD family protein [Thermovibrio ammonificans HB-1]
gi|317114908|gb|ADU97398.1| HhH-GPD family protein [Thermovibrio ammonificans HB-1]
Length = 221
Score = 56.6 bits (135), Expect = 6e-05, Method: Composition-based stats.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 19/171 (11%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
EA+ D ++ N IK G A +K+ +VR+ G +E L+ P + LL
Sbjct: 62 EALSSTDEGELQNLIKPAGFFRQKARYLKELSRFVVREGG---IEGLKAQPLKVLRPKLL 118
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLL--ELYPV 560
+ +G+G ++ + + L L +F VD R+ RLG + + + + L+ E+ P
Sbjct: 119 NVKGIGPETADSILLYALDKPSFVVDKYTKRLLYRLGVLEGESVSYNRVKTLVEGEIPPT 178
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
E +++Y ELH ++ K +C K++PNC CP+R C
Sbjct: 179 EEHLKEY-------------KELHALIVELCKRYC-KTRPNCRECPLRELC 215
>gi|375084054|ref|ZP_09731064.1| endonuclease III [Thermococcus litoralis DSM 5473]
gi|374741220|gb|EHR77648.1| endonuclease III [Thermococcus litoralis DSM 5473]
Length = 237
Score = 56.6 bits (135), Expect = 6e-05, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 494 PDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 553
PDK +E L+ G+G K V PVDT+V RI+ RLG P + PE ++ +
Sbjct: 125 PDKIEE-LMKLPGIGRKCANIVLAYGFGKQTIPVDTHVNRISKRLGLAPPKVSPEKVEEY 183
Query: 554 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
L +L P K LW +Y +++ M+ GK C P C CP++ C
Sbjct: 184 LKQLIP------KDLW----------IY-VNHAMVDHGKRICKPINPKCTECPLQDLC 224
>gi|225871801|ref|YP_002753255.1| base excision DNA repair protein, HhH-GPD family [Acidobacterium
capsulatum ATCC 51196]
gi|225793588|gb|ACO33678.1| base excision DNA repair protein, HhH-GPD family [Acidobacterium
capsulatum ATCC 51196]
Length = 239
Score = 56.6 bits (135), Expect = 6e-05, Method: Composition-based stats.
Identities = 43/178 (24%), Positives = 77/178 (43%), Gaps = 11/178 (6%)
Query: 437 KDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDK 496
+D L ++A+ +++ I+ G A ++ L + ++G LE + P +
Sbjct: 57 RDLLQFDALLALPEDELRELIRPSGFMQRKAATLRALLELVANEYGG-SLERFAEAPAET 115
Query: 497 AKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLE 556
A+ LL+ G+G ++ + + L L A VD + R+ VR G P + +Q L
Sbjct: 116 ARAQLLAITGIGPETADAILLYALGQPAMVVDEYLRRVVVRHGLAPERVRYAEVQQ--LA 173
Query: 557 LYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
L E C E H ++ GK C ++ PNC CP+RG+ ++
Sbjct: 174 LAAFAEETDPAALADHCN-------EFHALVVQVGKAHCGRT-PNCAQCPLRGDLEYY 223
>gi|330837763|ref|YP_004412404.1| DNA-(apurinic or apyrimidinic site) lyase [Sphaerochaeta coccoides
DSM 17374]
gi|329749666|gb|AEC03022.1| DNA-(apurinic or apyrimidinic site) lyase [Sphaerochaeta coccoides
DSM 17374]
Length = 237
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 67/160 (41%), Gaps = 27/160 (16%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
+I I G A I + +LV +HG + VPPDK E L+S G+G K+
Sbjct: 96 QIETAIAPAGFFRTKARNILEISKKLVEEHGGL-------VPPDK--EALVSLPGVGTKT 146
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
L A VD +V IA R GWV + PE + L ++ P
Sbjct: 147 ANLTLNLGFGIDAICVDCHVHTIANRTGWVSTKN-PEQTEKELEKILP------------ 193
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
+R L+ ++++G+ CT P C+ CP+ C
Sbjct: 194 -----RRFWIPLNELLVSYGQKICTSVSPRCSICPIASTC 228
>gi|255654585|ref|ZP_05399994.1| endonuclease III [Clostridium difficile QCD-23m63]
gi|296449359|ref|ZP_06891141.1| endonuclease III [Clostridium difficile NAP08]
gi|296880707|ref|ZP_06904659.1| endonuclease III [Clostridium difficile NAP07]
gi|296261829|gb|EFH08642.1| endonuclease III [Clostridium difficile NAP08]
gi|296428280|gb|EFH14175.1| endonuclease III [Clostridium difficile NAP07]
Length = 285
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 27/165 (16%)
Query: 450 VNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGL 509
+ +I+ IK G+ + +IKD +L E PD + E L+ G+G
Sbjct: 141 IEEISKEIKSCGLYKSKSQKIKDTSEQLC--------ELYDGEVPD-SLEKLIKLPGVGR 191
Query: 510 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 569
K+ V +H A VDT+V R++ R+G V +P P+ + L+E P K W
Sbjct: 192 KTAGVVLSNAFNHPAIAVDTHVFRVSNRIGIVD-EPNPQKTEFALMEAIP------KERW 244
Query: 570 PRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
H+ +I G+ C P C +CP++ +C ++
Sbjct: 245 SHS-----------HHVLIFHGRRMCKARNPECASCPIKEDCNYY 278
>gi|223477172|ref|YP_002581604.1| Endonuclease III [Thermococcus sp. AM4]
gi|214032398|gb|EEB73228.1| Endonuclease III [Thermococcus sp. AM4]
Length = 239
Score = 56.6 bits (135), Expect = 6e-05, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 18/118 (15%)
Query: 494 PDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 553
PD E L+ G+G K V A PVDT+V RI+ RLG P + PE ++ +
Sbjct: 118 PDDINE-LMKLPGIGRKCANIVLAYGFGKQAIPVDTHVNRISKRLGLAPPRVPPEKVEEY 176
Query: 554 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
L EL P +K+++ +++ M+ G+ C +P C +CP++ C
Sbjct: 177 LRELIPK----EKWIY-------------VNHAMVDHGRSICKPIRPKCESCPLKELC 217
>gi|403223295|dbj|BAM41426.1| endonuclease III [Theileria orientalis strain Shintoku]
Length = 426
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 102/238 (42%), Gaps = 39/238 (16%)
Query: 386 SFSKELNGIDDATSKSKS------TRVSKEKQNDFDWDSLRRQVEANGGKKE-----RPE 434
+F+K NGI + +K + + E+ DF++ +L + ++ K E +
Sbjct: 203 NFTKVWNGIANKRNKELAPVDQYGSHCLAEQGKDFEFQTLVACMLSSQTKDEVTASCMEK 262
Query: 435 HTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPP 494
K L E + +V+++ + I + G + + IK L +G VP
Sbjct: 263 LKKRGLTLENMLKMEVSELDSLISKVGFHATKSKNIKKVAEILKEKYGG-------KVPS 315
Query: 495 DKAKEYLLSFRGLGLKSVECVRLLTLHHL-AFPVDTNVGRIAVRLGWVPLQPLPESLQLH 553
+K L S G+G K ++ + + + VD +V RI RLGWV + PE ++
Sbjct: 316 NKKD--LESLPGIGPKMANLIQQIAFNIVDGIAVDLHVHRITNRLGWVKTKT-PEETRVK 372
Query: 554 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
L EL P K LW E++ ++ FG+ FCT + P C CP+ C
Sbjct: 373 LEELLP------KSLWS-----------EVNPLLVGFGQTFCTAAGPGCPTCPVNKWC 413
>gi|392530023|ref|ZP_10277160.1| endonuclease III [Carnobacterium maltaromaticum ATCC 35586]
Length = 214
Score = 56.6 bits (135), Expect = 7e-05, Method: Composition-based stats.
Identities = 47/170 (27%), Positives = 73/170 (42%), Gaps = 26/170 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
EA V I + IK G+ A I+ +L+ E+ +VP K ++ L
Sbjct: 63 EAFLAVPVEAIMDDIKTIGLFRNKARHIQGCCRKLIE-------EFNGEVP--KTRKELT 113
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
S G+G+K+ V A VDT+V R+ RLG L+ ++ L++
Sbjct: 114 SLPGVGIKTANVVLGDAFGVPAIAVDTHVERVTKRLGICRLKDSVGEVEATLMK------ 167
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
KL + E H+++I FG+ CT P C+ CP+ ECR
Sbjct: 168 -----------KLPESMWVEAHHRLIFFGRYHCTARSPKCDICPLLEECR 206
>gi|167042822|gb|ABZ07540.1| putative HhH-GPD superfamily base excision DNA repair protein
[uncultured marine microorganism HF4000_ANIW137I15]
Length = 257
Score = 56.6 bits (135), Expect = 7e-05, Method: Composition-based stats.
Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 13/170 (7%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
++A+ I+ N+ A R+K F+ L H DL L +P D ++YLL +G+G ++
Sbjct: 81 RLAHLIRPARFFNVKADRLKAFVRFLWVGHQG-DLNLLFGLPADLLRKYLLELKGIGPET 139
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
+ + L F VD RI RLG Q P + + E++Q+ + R
Sbjct: 140 ADSILLYAAEFPVFVVDAYTHRIFSRLGL--YQGPPSGRKGY--------EALQEG-FHR 188
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASS 621
D E H ++ GK +C + +P C CP+ C + ++A +S
Sbjct: 189 FLSRDAPLYNEYHALLVELGKEYC-RPRPKCEFCPLSSICAYPSAAPEAS 237
>gi|433773185|ref|YP_007303652.1| endonuclease III [Mesorhizobium australicum WSM2073]
gi|433665200|gb|AGB44276.1| endonuclease III [Mesorhizobium australicum WSM2073]
Length = 270
Score = 56.6 bits (135), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 68/162 (41%), Gaps = 27/162 (16%)
Query: 451 NKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLK 510
K+ + I+ G+ A + L+RDHG +VP D+ + L+ G+G K
Sbjct: 108 TKVGDHIRTIGLWRNKAKNVIALSQALIRDHGG-------EVPDDR--DELVKLPGVGRK 158
Query: 511 SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP 570
+ V + VDT++ RI RLG P + PE ++ LL++ P
Sbjct: 159 TANVVLNMAFGQHTMAVDTHILRIGNRLGLAPGK-TPEQVEQGLLKIIP----------- 206
Query: 571 RLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
+ H+ +I G+ C KP+C AC + C+
Sbjct: 207 ------DEYMRHAHHWLILHGRYVCKARKPDCPACVIADICK 242
>gi|448716619|ref|ZP_21702549.1| HhH-GPD family protein [Halobiforma nitratireducens JCM 10879]
gi|445786833|gb|EMA37595.1| HhH-GPD family protein [Halobiforma nitratireducens JCM 10879]
Length = 321
Score = 56.6 bits (135), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 80/196 (40%), Gaps = 37/196 (18%)
Query: 453 IANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDL--EWLRDVPPDKAKEYLLSFRGLGLK 510
+A TI G+ N + + D ++ GS + ++ D PD ++ LL G+G K
Sbjct: 104 LAETISGAGLYNQKSEVLIDVAEWVLETFGSAEAFDAFVTDEEPDTVRKTLLEVSGVGPK 163
Query: 511 SVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLES--IQKY 567
+ +CV L FPVDT+V RI RLG P + E+++ L E P + +
Sbjct: 164 TADCVLLFAGGRPGVFPVDTHVHRIYRRLGVAPPEADHEAVRAVLEEAVPAAKCGFGPQN 223
Query: 568 LWPRLCKLDQR--------TLYEL--------------------HYQMITFGKVFCTKSK 599
+ R + DQ YE+ H I FG+ +CT K
Sbjct: 224 IAKRYNEGDQSEEEGFHKGGTYEVNGEVVAFAHGGVPPEKCGFGHTATIQFGREYCTARK 283
Query: 600 PNC----NACPMRGEC 611
P C +CP+ C
Sbjct: 284 PACLDGPESCPLFDLC 299
>gi|358374017|dbj|GAA90612.1| HhH-GPD family base excision DNA repair protein [Aspergillus
kawachii IFO 4308]
Length = 458
Score = 56.6 bits (135), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 79/203 (38%), Gaps = 56/203 (27%)
Query: 437 KDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGS---VDLEWLRDVP 493
K S+DW+AVR A + + IK G+ ++ + +IK L+ + ++ + L+ +D P
Sbjct: 232 KGSVDWDAVRRAPLKDVFEAIKRGGLADVKSKKIKAILDMVYEENQQRRDMLLKGSQDAP 291
Query: 494 PD------KAKEY--------------------------LLSFRGLGLKSVECVRLLTLH 521
D K+Y L+ + G+G K+ CV L L
Sbjct: 292 QDLLTKSEGGKQYEIACADQNFLSLNHLHSLATEDAMVELVKYPGIGPKTAACVLLFCLQ 351
Query: 522 HLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLY 581
F VDT++ RI LGWVP E LE+ ++ Y
Sbjct: 352 RPCFAVDTHIFRICKWLGWVPPDKATEITAFSHLEV----------------RIPDHLKY 395
Query: 582 ELHYQMITFGKVFCTKSKPNCNA 604
LH +I G KS P C A
Sbjct: 396 SLHQLLIRHG-----KSCPRCRA 413
>gi|167645377|ref|YP_001683040.1| HhH-GPD family protein [Caulobacter sp. K31]
gi|167347807|gb|ABZ70542.1| HhH-GPD family protein [Caulobacter sp. K31]
Length = 242
Score = 56.6 bits (135), Expect = 7e-05, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 14/135 (10%)
Query: 478 VRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLK-SVECVRLLTLHHLAFPVDTNVGRIAV 536
VR + L+ L ++ D A+ +L G+G+K + + L+ A VDT+V R+A
Sbjct: 103 VRSGWKLSLDHLAELELDSARWWLQGLPGVGVKVAASVLNFSPLNMRALVVDTHVHRVAS 162
Query: 537 RLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCT 596
R+G VP L++L P + + LYELH+ M G++ C+
Sbjct: 163 RMGLVPASYDTAHAYRALMDLVPDSWTAED-------------LYELHWLMKGLGQLLCS 209
Query: 597 KSKPNCNACPMRGEC 611
P C AC ++ C
Sbjct: 210 HHAPRCGACALKATC 224
>gi|448449860|ref|ZP_21591955.1| HhH-GPD family protein [Halorubrum litoreum JCM 13561]
gi|445812626|gb|EMA62617.1| HhH-GPD family protein [Halorubrum litoreum JCM 13561]
Length = 233
Score = 56.6 bits (135), Expect = 7e-05, Method: Composition-based stats.
Identities = 46/164 (28%), Positives = 73/164 (44%), Gaps = 18/164 (10%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHG-SVDLEWLRDVPPDKAKE 499
D+ AV AD ++ TI+ G+ + A RI+ L + + G + L +L +P D+AK+
Sbjct: 73 DFAAVEGADHEELKETIRVAGLADQKAARIQRALTAIREETGGAYSLAFLDAMPTDEAKD 132
Query: 500 YLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
+L +G+G K+ V VDT+V R++ R G VP E L E P
Sbjct: 133 WLTEIKGVGPKTASVVLNFHFGKPTMAVDTHVERVSKRFGLVPESASNERAHEALDEQVP 192
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCN 603
D+ T Y LH +I G+ C+ +C+
Sbjct: 193 ----------------DELT-YPLHVLLIRHGREHCSARGADCD 219
>gi|407929765|gb|EKG22575.1| hypothetical protein MPH_00043 [Macrophomina phaseolina MS6]
Length = 342
Score = 56.6 bits (135), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 69/163 (42%), Gaps = 19/163 (11%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
K+ TI+ G++ I L + R HG DL+ L D + A + L+S++ +G KS
Sbjct: 21 KLQETIRCGGLHVRKTRIIMSILEEVRRRHGRWDLDHLLDASDEDAMKELMSYKYIGPKS 80
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
V L F VDT+V RIA GW P + E Q HL + PV
Sbjct: 81 AFVVMGWCLKRNRFTVDTHVYRIAGLWGWRPKEATREKTQSHLDAVIPV----------- 129
Query: 572 LCKLDQRTLYELHYQMITFGKV--FCTKSKPNCNACPMRGECR 612
++LH+ +I G+ C + C ++ E +
Sbjct: 130 ------ELKFKLHFFLIQHGRTCPACRGGSKGDHQCAVQAEVK 166
>gi|222528627|ref|YP_002572509.1| HhH-GPD family protein [Caldicellulosiruptor bescii DSM 6725]
gi|222455474|gb|ACM59736.1| HhH-GPD family protein [Caldicellulosiruptor bescii DSM 6725]
Length = 225
Score = 56.2 bits (134), Expect = 8e-05, Method: Composition-based stats.
Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 17/163 (10%)
Query: 453 IANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSV 512
++ IK G N A R+K+F N L R+ S DLE L + ++ LLS +G+G ++
Sbjct: 76 LSELIKPAGYYNQKAKRLKEFCNFLKREFNS-DLEKLFALDISSLRQVLLSQKGIGFETA 134
Query: 513 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRL 572
+ + L F VD+ R+ RLG L ES ++ +L + + L P
Sbjct: 135 DSIILYGAEKPIFVVDSYTKRLFYRLG------LIESEKISYNDLQAI---VMTNLTP-- 183
Query: 573 CKLDQRTLY-ELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
Q LY E H ++ K C KP CN C ++ C ++
Sbjct: 184 ----QTQLYNEFHALIVKHCKEICKSKKPICNKCCLKLICNYY 222
>gi|330502366|ref|YP_004379235.1| DNA-(apurinic or apyrimidinic site) lyase/endonuclease III
[Pseudomonas mendocina NK-01]
gi|328916652|gb|AEB57483.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Pseudomonas mendocina NK-01]
Length = 212
Score = 56.2 bits (134), Expect = 8e-05, Method: Composition-based stats.
Identities = 47/173 (27%), Positives = 75/173 (43%), Gaps = 27/173 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
EA+ V ++ IK G+ N A + + L+ HGSV VP ++ E L
Sbjct: 62 EAIYALGVEGLSEYIKTIGLYNSKAKNVIEACRILIEKHGSV-------VPDNR--EDLE 112
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
+ G+G K+ V LA VDT++ R++ R G P + + E ++ LL+ P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQLAMAVDTHIFRVSNRTGIAPGKNVVE-VEKKLLKFVP--- 168
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFA 615
+ L + H+ +I G+ CT KP C AC + C + A
Sbjct: 169 --------------KDYLLDAHHWLILHGRYVCTARKPRCGACRIEDLCEYKA 207
>gi|302921021|ref|XP_003053199.1| hypothetical protein NECHADRAFT_77955 [Nectria haematococca mpVI
77-13-4]
gi|256734139|gb|EEU47486.1| hypothetical protein NECHADRAFT_77955 [Nectria haematococca mpVI
77-13-4]
Length = 485
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 58/145 (40%), Gaps = 39/145 (26%)
Query: 437 KDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFL------NRLVRD---------- 480
K S+DW VR A + I IK G+ + IK L N RD
Sbjct: 259 KGSVDWNKVRTAPLTTIVEAIKTGGLAQVKGKDIKAILELVHEENVKRRDAFIQERKSGK 318
Query: 481 -----------HGSVDLEWLR------------DVPPDKAKEYLLSFRGLGLKSVECVRL 517
G DLE L+ + PD+A + L F G+G+K+ CV L
Sbjct: 319 MSGAFKADGKTQGQKDLEILKTEQDILSLDHIHGMHPDEAMQTLTKFPGIGVKTASCVIL 378
Query: 518 LTLHHLAFPVDTNVGRIAVRLGWVP 542
L +F VDT+V R+ L W+P
Sbjct: 379 FCLQQPSFAVDTHVHRLTGWLKWMP 403
>gi|254974165|ref|ZP_05270637.1| endonuclease III [Clostridium difficile QCD-66c26]
gi|255091566|ref|ZP_05321044.1| endonuclease III [Clostridium difficile CIP 107932]
gi|255313292|ref|ZP_05354875.1| endonuclease III [Clostridium difficile QCD-76w55]
gi|255515983|ref|ZP_05383659.1| endonuclease III [Clostridium difficile QCD-97b34]
gi|255649074|ref|ZP_05395976.1| endonuclease III [Clostridium difficile QCD-37x79]
gi|306519188|ref|ZP_07405535.1| endonuclease III [Clostridium difficile QCD-32g58]
gi|384359832|ref|YP_006197684.1| endonuclease III [Clostridium difficile BI1]
Length = 350
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 29/166 (17%)
Query: 450 VNKIANTIKERGMNNMLAGRIKDFLNRLVRDH-GSVDLEWLRDVPPDKAKEYLLSFRGLG 508
+ +I+ IK G+ + +IKD +L + G V PD + E L+ G+G
Sbjct: 206 IEEISKEIKSCGLYKSKSQKIKDTSEQLCELYDGEV---------PD-SLEKLIKLPGVG 255
Query: 509 LKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYL 568
K+ V +H A VDT+V R++ R+G V +P P+ + L+E P K
Sbjct: 256 RKTAGVVLSNAFNHPAIAVDTHVFRVSNRIGIVD-EPNPQKTEFALMEAIP------KER 308
Query: 569 WPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
W H+ +I G+ C P C +CP++ +C ++
Sbjct: 309 WSHS-----------HHVLIFHGRRMCKARNPECASCPIKEDCNYY 343
>gi|376295286|ref|YP_005166516.1| HhH-GPD family protein [Desulfovibrio desulfuricans ND132]
gi|323457847|gb|EGB13712.1| HhH-GPD family protein [Desulfovibrio desulfuricans ND132]
Length = 217
Score = 56.2 bits (134), Expect = 8e-05, Method: Composition-based stats.
Identities = 48/171 (28%), Positives = 75/171 (43%), Gaps = 20/171 (11%)
Query: 440 LDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKE 499
L+ E + V ++A I+ G N+ A RI +FL + ++D DL L+D + +
Sbjct: 60 LEAEPLHALSVPRLAELIRPAGYYNIKAKRIHNFL-QFLKDEAEFDLLALKDRELAELRP 118
Query: 500 YLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVR--LGWVPLQPLPESLQLHLLEL 557
+LS G+G ++ +C+ L L F VD RI R L W E + H
Sbjct: 119 KVLSINGIGPETGDCILLYALDFPTFVVDAYTARILGRHGLAW-------EDIDYH---- 167
Query: 558 YPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMR 608
L+SI P D E H ++ G +C K C+ACP++
Sbjct: 168 --GLQSIFMDALPE----DVALYNEYHALIVRVGANWCRKKAGLCDACPLQ 212
>gi|302349120|ref|YP_003816758.1| endoIII-related endonuclease [Acidilobus saccharovorans 345-15]
gi|302329532|gb|ADL19727.1| predicted EndoIII-related endonuclease [Acidilobus saccharovorans
345-15]
Length = 230
Score = 56.2 bits (134), Expect = 8e-05, Method: Composition-based stats.
Identities = 55/205 (26%), Positives = 81/205 (39%), Gaps = 37/205 (18%)
Query: 407 SKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNML 466
S ++ + +D L+R A G R D L+ R V + A I+E + +
Sbjct: 53 SNDRNSIAAYDDLKR---ATGLDPARILALGDGLEQVIRRAGMVRQKARAIRE--LARLA 107
Query: 467 AGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFP 526
R DFL +HG ++ + + LLS RG+G K+V+ L F
Sbjct: 108 LERGVDFL-----EHGDIN----------EVERALLSIRGIGSKTVDVFLSLYRKVPRFA 152
Query: 527 VDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQ 586
VDT+ RIA R G E + LL + S E H
Sbjct: 153 VDTHAKRIAARWGLTRKGASYEEVSGALLNFFGPERS-----------------DEAHRL 195
Query: 587 MITFGKVFCTKSKPNCNACPMRGEC 611
+I FG+ +CT P C+ CP+R C
Sbjct: 196 LIAFGRAYCTARNPRCSECPLRQYC 220
>gi|70984374|ref|XP_747701.1| HhH-GPD family base excision DNA repair protein [Aspergillus
fumigatus Af293]
gi|66845328|gb|EAL85663.1| HhH-GPD family base excision DNA repair protein [Aspergillus
fumigatus Af293]
Length = 470
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 77/200 (38%), Gaps = 53/200 (26%)
Query: 437 KDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDH-------------GS 483
K S++W+AVR A + + IK G+ + + +IK L+ + +++ GS
Sbjct: 239 KGSVNWDAVRQAPLKDVFEAIKRGGLAEIKSRKIKAILDMVYQENQERKEFLVKGESDGS 298
Query: 484 VD-------------------LEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLA 524
D L L + + A L+ + G+G K+ CV L L
Sbjct: 299 SDLMPGEKEYEIACADQNFLSLNHLHTLSTEDAMTELVKYPGIGPKTAACVILFCLQRPC 358
Query: 525 FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELH 584
F VDT++ RI LGWVP E LE+ I YL Y LH
Sbjct: 359 FAVDTHIFRICKWLGWVPPGKATEVTAFSHLEV-----RIPDYL-----------KYSLH 402
Query: 585 YQMITFGKVFCTKSKPNCNA 604
+I GK P C A
Sbjct: 403 QLLIRHGKTC-----PRCRA 417
>gi|159041229|ref|YP_001540481.1| HhH-GPD family protein [Caldivirga maquilingensis IC-167]
gi|157920064|gb|ABW01491.1| HhH-GPD family protein [Caldivirga maquilingensis IC-167]
Length = 233
Score = 56.2 bits (134), Expect = 9e-05, Method: Composition-based stats.
Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 475 NRLVRDHGSVD----LEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTN 530
+RLVR ++ L L + D+ + LLS G+G ++ + + L L+ + P+ T
Sbjct: 99 SRLVRIARTITSMGGLRALSKLSDDEVRVMLLSMDGVGYETADSIMLFALNRVTIPISTY 158
Query: 531 VGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYE---LHYQM 587
R+ R+ + L E +L L++L P R LYE H +
Sbjct: 159 TIRVIKRI-YGYLGGGYEDWRLTLMKLLP------------------RGLYEYKLFHAGV 199
Query: 588 ITFGKVFCTKSKPNCNACPMRGECR 612
+T GK +C K P C CP+R +CR
Sbjct: 200 VTTGKEWCLKETPRCIECPLRNQCR 224
>gi|116748504|ref|YP_845191.1| endonuclease III [Syntrophobacter fumaroxidans MPOB]
gi|116697568|gb|ABK16756.1| endonuclease III / DNA-(apurinic or apyrimidinic site) lyase
[Syntrophobacter fumaroxidans MPOB]
Length = 227
Score = 56.2 bits (134), Expect = 9e-05, Method: Composition-based stats.
Identities = 43/169 (25%), Positives = 72/169 (42%), Gaps = 27/169 (15%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
A + ++ +K G A IK+ L +HG ++PP+ + L+ G+
Sbjct: 81 APLEQLETDVKSTGFYRNKARNIKEACRVLAEEHGG-------EIPPNL--DILVKLPGI 131
Query: 508 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 567
G K+ + VDT+VGR++ RLG + PE ++ L+E+ P +
Sbjct: 132 GRKTANVILGNAFGIPGIVVDTHVGRVSERLGLTS-EKDPEKIERDLMEIIP------RE 184
Query: 568 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFAS 616
W + C +Q+I G+ C KP CP+R C H A+
Sbjct: 185 KWIKFC-----------HQLIGLGREICQARKPKTGVCPLRPHCDHAAA 222
>gi|451343149|ref|ZP_21912225.1| endonuclease III [Eggerthia catenaformis OT 569 = DSM 20559]
gi|449338145|gb|EMD17297.1| endonuclease III [Eggerthia catenaformis OT 569 = DSM 20559]
Length = 222
Score = 56.2 bits (134), Expect = 9e-05, Method: Composition-based stats.
Identities = 46/166 (27%), Positives = 69/166 (41%), Gaps = 26/166 (15%)
Query: 447 CADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRG 506
CAD+N + IK G+ A I+ L+ D+ V VP E L+ G
Sbjct: 74 CADINDLQRYIKRIGLYRNKAKNIQAMCQVLINDYQGV-------VP--SVMEELIDLPG 124
Query: 507 LGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQK 566
+G K+ V + VDT+V RIA RL + L+ +++ L +
Sbjct: 125 VGRKTANVVLADAFNIPGIAVDTHVTRIAKRLKFCYLKDNVGTIEKKLRK---------- 174
Query: 567 YLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
K+ Q + H+QMI FG+ C P+C CP+ CR
Sbjct: 175 -------KIPQDRWIKSHHQMIFFGRYHCKAINPHCYECPLIDICR 213
>gi|336436197|ref|ZP_08615910.1| endonuclease III [Lachnospiraceae bacterium 1_4_56FAA]
gi|336008237|gb|EGN38256.1| endonuclease III [Lachnospiraceae bacterium 1_4_56FAA]
Length = 211
Score = 56.2 bits (134), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 76/171 (44%), Gaps = 27/171 (15%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
AD+ ++ IK G + A I + R VRD + +VP ++ E L S G+
Sbjct: 67 ADLRELEQDIKPTGFYHNKAKNIISCM-RDVRDR------FGGEVP--RSLEDLTSLAGV 117
Query: 508 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 567
G K+ +R H + VDT+V RI+ RLG Q PE ++ L++ P
Sbjct: 118 GRKTANVIRGNIYHDASVVVDTHVKRISNRLGLTKNQD-PEKIEQDLMKELPK------- 169
Query: 568 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAF 618
D LY + Q+ITFG+ CT P C C +R C+ + +
Sbjct: 170 --------DHWILYNI--QIITFGRSICTARSPKCEECFLRAYCKTISKSI 210
>gi|448428859|ref|ZP_21584485.1| HhH-GPD family protein [Halorubrum terrestre JCM 10247]
gi|445675837|gb|ELZ28365.1| HhH-GPD family protein [Halorubrum terrestre JCM 10247]
Length = 233
Score = 56.2 bits (134), Expect = 9e-05, Method: Composition-based stats.
Identities = 45/164 (27%), Positives = 73/164 (44%), Gaps = 18/164 (10%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHG-SVDLEWLRDVPPDKAKE 499
D+ A+ AD ++ TI+ G+ + A RI+ L + + G + L +L +P D+AK+
Sbjct: 73 DFAAIEGADHEELKETIRVAGLADQKAARIQRALTAIREETGGAYSLAFLDAMPTDEAKD 132
Query: 500 YLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
+L +G+G K+ V VDT+V R++ R G VP E L E P
Sbjct: 133 WLTEIKGVGPKTASVVLNFHFGKPTMAVDTHVERVSKRFGLVPESASNERAHEALDEQVP 192
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCN 603
D+ T Y LH +I G+ C+ +C+
Sbjct: 193 ----------------DELT-YPLHVLLIRHGREHCSARGADCD 219
>gi|451996449|gb|EMD88916.1| hypothetical protein COCHEDRAFT_1226992 [Cochliobolus
heterostrophus C5]
Length = 525
Score = 56.2 bits (134), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 78/204 (38%), Gaps = 44/204 (21%)
Query: 437 KDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDH--------------- 481
K S+DW VR AD +I IK G+ ++ + IK L + ++
Sbjct: 241 KGSVDWNKVRQADQKEIFEAIKSGGLADVKSKDIKKILQMVWEENQARRKELQSSSHKAP 300
Query: 482 GS-------------------VDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHH 522
GS V L+ L + + A L + G+G K+ CV L L
Sbjct: 301 GSANEAEEEKNTEIEKANQDVVSLDHLHLLSSEDAFNALTKYPGIGPKTASCVLLFCLQR 360
Query: 523 LAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY--PVLESIQKYLWPRLCKLDQRTL 580
+F VDT+V R+ LGWVP L + P S + R +
Sbjct: 361 PSFAVDTHVFRLCKWLGWVPPPGDSRGLAPGAKGTFAGPTRNSTYAHCEVR---IPDHLK 417
Query: 581 YELHYQMITFGKVFCTKSKPNCNA 604
Y+LHY +I G KS P C A
Sbjct: 418 YQLHYLLIKHG-----KSCPRCRA 436
>gi|414083690|ref|YP_006992398.1| endonuclease III [Carnobacterium maltaromaticum LMA28]
gi|412997274|emb|CCO11083.1| endonuclease III [Carnobacterium maltaromaticum LMA28]
Length = 214
Score = 55.8 bits (133), Expect = 1e-04, Method: Composition-based stats.
Identities = 47/170 (27%), Positives = 73/170 (42%), Gaps = 26/170 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
EA V I + IK G+ A I+ +L+ E+ +VP K ++ L
Sbjct: 63 EAFLAVPVEAIMDDIKTIGLFRNKARHIQGCCRKLID-------EFNGEVP--KTRKELT 113
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
S G+G+K+ V A VDT+V R+ RLG L+ ++ L++
Sbjct: 114 SLPGVGIKTANVVLGDAFGVPAIAVDTHVERVTKRLGICRLKDSVGEVEATLMK------ 167
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
KL + E H+++I FG+ CT P C+ CP+ ECR
Sbjct: 168 -----------KLPESMWVEAHHRLIFFGRYHCTARSPKCDICPLLEECR 206
>gi|116511912|ref|YP_809128.1| endonuclease III / DNA-(apurinic or apyrimidinic site) lyase
[Lactococcus lactis subsp. cremoris SK11]
gi|385838143|ref|YP_005875773.1| Endonuclease III [Lactococcus lactis subsp. cremoris A76]
gi|116107566|gb|ABJ72706.1| DNA-(apurinic or apyrimidinic site) lyase [Lactococcus lactis
subsp. cremoris SK11]
gi|358749371|gb|AEU40350.1| Endonuclease III [Lactococcus lactis subsp. cremoris A76]
Length = 218
Score = 55.8 bits (133), Expect = 1e-04, Method: Composition-based stats.
Identities = 51/194 (26%), Positives = 77/194 (39%), Gaps = 23/194 (11%)
Query: 419 LRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLV 478
L Q G K P D + + A V +I I+ G+ A I LV
Sbjct: 39 LSAQATDKGVNKATPALFAAFPDAQTMSQAKVEEIEALIRTIGLYKTKAKNILRTSQMLV 98
Query: 479 RDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRL 538
D G + L D+P DK + L + G+G K+ V VDT+V R++ RL
Sbjct: 99 ADFGGI----LPDLPKDK--KLLQTLPGVGRKTANVVLAEAYGIPGIAVDTHVERVSKRL 152
Query: 539 GWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKS 598
V + ++ L++L P + +Q H+ +I FG+ CT
Sbjct: 153 DIVAQKATVLEVEEKLMKLIPEDKWVQS-----------------HHHLIFFGRYHCTAK 195
Query: 599 KPNCNACPMRGECR 612
KP C CP+ C+
Sbjct: 196 KPKCAGCPVLDYCK 209
>gi|88602750|ref|YP_502928.1| HhH-GPD [Methanospirillum hungatei JF-1]
gi|88188212|gb|ABD41209.1| DNA-3-methyladenine glycosylase III [Methanospirillum hungatei
JF-1]
Length = 226
Score = 55.8 bits (133), Expect = 1e-04, Method: Composition-based stats.
Identities = 45/171 (26%), Positives = 73/171 (42%), Gaps = 17/171 (9%)
Query: 438 DSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKA 497
D +D + + A + IA I+ N A +I FL+ + D+ + +P D+
Sbjct: 60 DLMDADILYQAGQDTIAPLIRSSRYYNQKARKIMTFLSWFLETCDG-DVSRMASLPTDQV 118
Query: 498 KEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEL 557
+E LL+ G G ++V+ + L L F VD RI R GW E
Sbjct: 119 REELLNLSGFGPETVDSILLYALEKPVFVVDAYTRRIGSRQGW--------------FED 164
Query: 558 YPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMR 608
+ +Q++ RL D + H Q++ G C K+ P C+ CP+R
Sbjct: 165 DASYDQMQEFFMNRLSP-DVPLYNDYHAQIVYLGNKLCKKT-PLCSICPVR 213
>gi|429216868|ref|YP_007174858.1| endoIII-related endonuclease [Caldisphaera lagunensis DSM 15908]
gi|429133397|gb|AFZ70409.1| putative endoIII-related endonuclease [Caldisphaera lagunensis DSM
15908]
Length = 235
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 80/177 (45%), Gaps = 22/177 (12%)
Query: 435 HTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPP 494
+ K LD E + V+ ++ I+ G+ + I + L + V++ G ++L + P
Sbjct: 76 YEKTGLDPEKIVDLGVDNVSEIIRTAGLPKQKSHSIIE-LAKFVKEKGE---KYLLEKDP 131
Query: 495 DKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHL 554
+ K L+ G+G K+ + T ++ FPVDT++ RIA+R G +S+ L
Sbjct: 132 LQLKNELMRIPGIGEKTSDVFLSFTRNYPVFPVDTHIRRIALRWGLSDKNSY-KSISQAL 190
Query: 555 LELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
+E + P L + H +ITFG+++C P C C ++ C
Sbjct: 191 IE----------FFGPDLSN-------KAHKLLITFGRIYCKAKNPRCKECFLKEIC 230
>gi|237756607|ref|ZP_04585124.1| endonuclease III [Sulfurihydrogenibium yellowstonense SS-5]
gi|237691238|gb|EEP60329.1| endonuclease III [Sulfurihydrogenibium yellowstonense SS-5]
Length = 215
Score = 55.8 bits (133), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 19/138 (13%)
Query: 476 RLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIA 535
+++++ + +E PD E LLSF+G+G K+ V A VD +V RI+
Sbjct: 93 KIIKEISKILVEKFNSKVPDDL-ETLLSFKGVGRKTANLVLSEGFGKPAICVDVHVHRIS 151
Query: 536 VRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFC 595
R+G V + PE + L+E+ P +KY W ++++ + FG+ C
Sbjct: 152 NRIGLVKTKN-PEETEFKLMEILP-----KKY-WK-----------DINFVFVAFGQTIC 193
Query: 596 TKSKPNCNACPMRGECRH 613
KP CN CP+ C +
Sbjct: 194 KPVKPKCNQCPIIKYCEY 211
>gi|383319923|ref|YP_005380764.1| DNA-3-methyladenine glycosylase III [Methanocella conradii HZ254]
gi|379321293|gb|AFD00246.1| DNA-3-methyladenine glycosylase III [Methanocella conradii HZ254]
Length = 240
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 19/159 (11%)
Query: 450 VNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGL 509
V IA IK N A +IK+F+ +++G DL + ++ LL+ +GLG
Sbjct: 79 VEDIAPLIKPARFYNSKAVKIKNFMEFFFKEYGG-DLAAMSSEDSASLRKKLLAVKGLGK 137
Query: 510 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 569
++V+C+ L F VD RI +R G + P + +Q + + P
Sbjct: 138 ETVDCILLYACGKPVFVVDAYTKRIFLRYGILNGDPTYDEIQGYFMASLP---------- 187
Query: 570 PRLCKLDQRTLY-ELHYQMITFGKVFCTKSKPNCNACPM 607
LY + H Q++ G C + KP C +CP+
Sbjct: 188 ------PNAALYNDYHAQIVHLGSSIC-RPKPLCGSCPI 219
>gi|320105404|ref|YP_004180994.1| iron-sulfur cluster loop [Terriglobus saanensis SP1PR4]
gi|319923925|gb|ADV81000.1| iron-sulfur cluster loop [Terriglobus saanensis SP1PR4]
Length = 258
Score = 55.8 bits (133), Expect = 1e-04, Method: Composition-based stats.
Identities = 46/171 (26%), Positives = 77/171 (45%), Gaps = 14/171 (8%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYL 501
W+ +R A V +I +I + A ++K L + R G + L+ L +K + +L
Sbjct: 84 WDKLRDAPVAEIEESIALATFPDRKAPQLKQTLEEITRRVGKLSLDSLATYKTEKIRAWL 143
Query: 502 LSFRGLGLK-SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
F G+G+K S V LH A +D++ RIA+RLG P +++ L+ + P
Sbjct: 144 EQFPGVGVKTSGAVVNFSWLHRKAICIDSHHQRIAIRLGLAPKGADARAVEEQLMAIAP- 202
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
W + +L +LH G+ CT +P C+ C +R C
Sbjct: 203 ------EEWTAEQMDEHHSLVKLH------GQERCTFREPRCSRCALREVC 241
>gi|319790239|ref|YP_004151872.1| iron-sulfur cluster loop protein [Thermovibrio ammonificans HB-1]
gi|317114741|gb|ADU97231.1| iron-sulfur cluster loop protein [Thermovibrio ammonificans HB-1]
Length = 214
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 85/205 (41%), Gaps = 39/205 (19%)
Query: 411 QNDFDWDS---LRRQVEANGGKK-ERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNML 466
QN D ++ L R A GGK E P+ T D L EA+R + K KER +
Sbjct: 40 QNTTDLNASRCLERLKRATGGKLLEIPQLTTDELV-EAIRPCGMFKQ----KERAL---- 90
Query: 467 AGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFP 526
++ ++R R E LR++PP++ + L +G K+ + FP
Sbjct: 91 ----RELVSRWPRLE-----EKLRELPPEEGIKLLTELPYIGPKTARVILTFGFGKNTFP 141
Query: 527 VDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQ 586
+DT+ ++ RLG P E + +K+ R + ELHY
Sbjct: 142 IDTHCKKVLSRLGIFPKGWSTEEIS----------RFFEKHFSARFNR-------ELHYN 184
Query: 587 MITFGKVFCTKSKPNCNACPMRGEC 611
+I G+ C KP C CP+R C
Sbjct: 185 LIRLGRRVCKARKPECERCPLRNLC 209
>gi|114566493|ref|YP_753647.1| endonuclease III [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
gi|114337428|gb|ABI68276.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Syntrophomonas wolfei subsp. wolfei str. Goettingen]
Length = 207
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 70/169 (41%), Gaps = 27/169 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
EA+ D++ + I+ G+ A +K +V + +VP D + LL
Sbjct: 60 EALAAIDLSLLEEKIRGVGLYRNKARHLKKMAQIIVEQYQG-------EVPSDF--DELL 110
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
S G+G KS +R + VDT+V R+A RLG V LPE + L E P
Sbjct: 111 SLPGVGRKSANVIRSVVFKKPGLGVDTHVHRVANRLGLVN-SKLPEQTEKALKEQIP--- 166
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
++ E H+ +I G+ C KP CN C + G C
Sbjct: 167 --------------EKCWSEAHHLLIFHGRRICQARKPQCNNCVLEGLC 201
>gi|313886400|ref|ZP_07820122.1| endonuclease III [Porphyromonas asaccharolytica PR426713P-I]
gi|312924146|gb|EFR34933.1| endonuclease III [Porphyromonas asaccharolytica PR426713P-I]
Length = 219
Score = 55.8 bits (133), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 55/121 (45%), Gaps = 18/121 (14%)
Query: 498 KEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPL-PESLQLHLLE 556
+E L + G+G KS + + A PVDT+V R+A R+G + P +++ L++
Sbjct: 109 REELEALPGVGRKSASVMLAVCFETPAMPVDTHVYRVAKRIGLASSRATTPLAVEQALVK 168
Query: 557 LYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFAS 616
P Q L H+Q+I G+ C KP C C + CRH+A+
Sbjct: 169 RIP-----------------QAQLIRAHHQLILLGRYICKARKPLCAECTLHACCRHYAT 211
Query: 617 A 617
A
Sbjct: 212 A 212
>gi|367021722|ref|XP_003660146.1| hypothetical protein MYCTH_2298082 [Myceliophthora thermophila ATCC
42464]
gi|347007413|gb|AEO54901.1| hypothetical protein MYCTH_2298082 [Myceliophthora thermophila ATCC
42464]
Length = 573
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 18/133 (13%)
Query: 439 SLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLV------------------RD 480
S+DW +R + ++A IK G M + IK L+ + +
Sbjct: 351 SIDWNKIRLSSHQELAQVIKVAGNGPMKSKHIKQILDIVFDENVQRAMMQDPAPEAGKKA 410
Query: 481 HGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGW 540
+ L+++ + D+A +S+ G+G+K+ CV L L F VDT+V + LGW
Sbjct: 411 QDLLSLDYMHGMTKDEAMAKFVSYPGVGIKTAACVTLFCLRLPCFAVDTHVHKFCRWLGW 470
Query: 541 VPLQPLPESLQLH 553
VP P++ H
Sbjct: 471 VPENADPDNCFRH 483
>gi|218281634|ref|ZP_03488042.1| hypothetical protein EUBIFOR_00609 [Eubacterium biforme DSM 3989]
gi|218217269|gb|EEC90807.1| hypothetical protein EUBIFOR_00609 [Eubacterium biforme DSM 3989]
Length = 208
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 71/166 (42%), Gaps = 28/166 (16%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLV-RDHGSVDLEWLRDVPPDKAKEYLLSFRG 506
A V+++ IK G+ A I + LV R HG V P K+ L+S G
Sbjct: 64 ATVSELEPYIKRIGLYRNKARSISNLSKDLVERYHGQV---------PYTYKD-LMSLAG 113
Query: 507 LGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQK 566
+G K+ VR + +F VDT+V R++ RLG E ++ E +++
Sbjct: 114 VGRKTANVVRSVAFDIPSFAVDTHVNRVSKRLGLAKYNDSVEKVE----------EKLKR 163
Query: 567 YLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
K+D+ + H+ I FG+ C P C CP + C+
Sbjct: 164 -------KIDRSRWNQGHHDFIFFGRYLCHSRNPECERCPFKSFCK 202
>gi|148269689|ref|YP_001244149.1| endonuclease III [Thermotoga petrophila RKU-1]
gi|170288365|ref|YP_001738603.1| endonuclease III [Thermotoga sp. RQ2]
gi|281411600|ref|YP_003345679.1| endonuclease III [Thermotoga naphthophila RKU-10]
gi|147735233|gb|ABQ46573.1| endonuclease III [Thermotoga petrophila RKU-1]
gi|170175868|gb|ACB08920.1| endonuclease III [Thermotoga sp. RQ2]
gi|281372703|gb|ADA66265.1| endonuclease III [Thermotoga naphthophila RKU-10]
Length = 213
Score = 55.8 bits (133), Expect = 1e-04, Method: Composition-based stats.
Identities = 48/160 (30%), Positives = 67/160 (41%), Gaps = 27/160 (16%)
Query: 455 NTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVEC 514
N IKE GM A RI + LV +G PD +E LL G+G K+
Sbjct: 67 NLIKESGMYRQKAARIVEISRILVERYGGR--------VPDSLEE-LLKLPGVGRKTANI 117
Query: 515 VRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCK 574
V + A VDT+V RI+ RLGWV + PE + L +L P + LW
Sbjct: 118 VLWVGFRKPALAVDTHVHRISNRLGWVKTRT-PEETEEALKKLLP------EDLWG---- 166
Query: 575 LDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
++ M+ FG+ C P C C ++ C +
Sbjct: 167 -------PINGSMVEFGRRICKPQNPLCEECFLKNHCEFY 199
>gi|398830894|ref|ZP_10589075.1| endonuclease III [Phyllobacterium sp. YR531]
gi|398213474|gb|EJN00068.1| endonuclease III [Phyllobacterium sp. YR531]
Length = 252
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 27/161 (16%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
K+ + I+ G+ A + L+ D+GSV PD +++ L+ G+G K+
Sbjct: 99 KVGDYIRTIGLWRNKAKNVITLSQTLINDYGSVV--------PD-SRDELVKLPGVGRKT 149
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
V + VDT++ RI RLG P + PE ++ L+++ P
Sbjct: 150 ANVVLSMAFGQATMAVDTHIFRIGNRLGLAPGK-TPEQVEDKLMKIIPA----------- 197
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
LY H+ +I G+ C KP C AC + C+
Sbjct: 198 ------EYLYHAHHWLILHGRYTCKARKPECPACIIADICK 232
>gi|354603229|ref|ZP_09021228.1| hypothetical protein HMPREF9450_00143 [Alistipes indistinctus YIT
12060]
gi|353349106|gb|EHB93372.1| hypothetical protein HMPREF9450_00143 [Alistipes indistinctus YIT
12060]
Length = 242
Score = 55.8 bits (133), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/125 (31%), Positives = 57/125 (45%), Gaps = 19/125 (15%)
Query: 492 VPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQ 551
VP D E L G+G K+ V ++ A PVDT+V R+A RLG P +
Sbjct: 107 VPEDI--EQLQRLPGVGRKTANVVGIVAFGKRAMPVDTHVFRVADRLGLSTGAKTPLQTE 164
Query: 552 LHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
+ L E +P P + L H+ +I G+ CT KP+C AC + C
Sbjct: 165 MQLTEGFP----------PEVLPL-------AHHWLILHGRYVCTARKPHCEACGLTPWC 207
Query: 612 RHFAS 616
R++A+
Sbjct: 208 RYYAT 212
>gi|188997187|ref|YP_001931438.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfurihydrogenibium sp.
YO3AOP1]
gi|188932254|gb|ACD66884.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 215
Score = 55.5 bits (132), Expect = 1e-04, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 19/138 (13%)
Query: 476 RLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIA 535
+++++ + +E PD E LLSF+G+G K+ V A VD +V RI+
Sbjct: 93 KIIKEISKILVEKFNSKVPDDL-ETLLSFKGVGRKTANLVLSEGFGKPAICVDVHVHRIS 151
Query: 536 VRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFC 595
R+G V + PE + L+++ P +KY W ++++ ++ FG+ C
Sbjct: 152 NRIGLVKTKN-PEETEFKLMKILP-----KKY-WK-----------DINFVLVAFGQTIC 193
Query: 596 TKSKPNCNACPMRGECRH 613
KP C CP+ C H
Sbjct: 194 KPVKPKCKECPIVKYCEH 211
>gi|374622424|ref|ZP_09694949.1| HhH-GPD family protein [Ectothiorhodospira sp. PHS-1]
gi|373941550|gb|EHQ52095.1| HhH-GPD family protein [Ectothiorhodospira sp. PHS-1]
Length = 221
Score = 55.5 bits (132), Expect = 1e-04, Method: Composition-based stats.
Identities = 46/177 (25%), Positives = 73/177 (41%), Gaps = 27/177 (15%)
Query: 440 LDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKE 499
LD E++ N +A I+ G N+ AGR++ F + + G L R + +
Sbjct: 59 LDAESLAALPRNDLAGLIRPSGYFNVKAGRLQAFCHWYLEQGGETAL---RGWSTEALRR 115
Query: 500 YLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRL----GWVPLQPLPESLQLHLL 555
LLS +G+G ++ + + L F VD R+ RL G P L ++ L
Sbjct: 116 GLLSVKGVGPETADDILLYAFERPVFVVDAYTRRLFARLELAGGDEPYDVLRTGVEAVLG 175
Query: 556 ELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
PVL E H ++ GK FC + +P+C CP+R C+
Sbjct: 176 ADVPVLN-------------------EFHALIVAHGKTFC-RPRPSCEGCPLRAMCQ 212
>gi|294508391|ref|YP_003572449.1| endonuclease III [Salinibacter ruber M8]
gi|294344720|emb|CBH25498.1| Endonuclease III [Salinibacter ruber M8]
Length = 386
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 18/116 (15%)
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPL-PESLQLHLLELYP 559
L + G+G K+ V + A PVDT+V R+A R+G V P+ ++ L + P
Sbjct: 216 LETLTGVGRKTARVVAQVAHDADALPVDTHVFRVANRIGLVKEDATTPKKVEQQLKRVIP 275
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFA 615
E W E H+ +I G+ CT P+C+ CP+ EC+H+
Sbjct: 276 KAE------WG-----------EAHHLLILHGRYTCTARSPDCHDCPIHEECKHYG 314
>gi|295690296|ref|YP_003593989.1| iron-sulfur cluster loop [Caulobacter segnis ATCC 21756]
gi|295432199|gb|ADG11371.1| iron-sulfur cluster loop [Caulobacter segnis ATCC 21756]
Length = 241
Score = 55.5 bits (132), Expect = 1e-04, Method: Composition-based stats.
Identities = 55/219 (25%), Positives = 89/219 (40%), Gaps = 31/219 (14%)
Query: 396 DATSKSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIAN 455
D S+ + +S Q+ WD+ R A +W+ + A V +A
Sbjct: 33 DPISQLVKSSISGRTQDAVSWDAFLRLRAAFK-------------NWDDLADAPVAAVAR 79
Query: 456 TIKERGMNNMLAGRIKDFLNRLVRDH-GSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVEC 514
I++ A + L R++RD G + L L+ + D+A+ L + G+G+K C
Sbjct: 80 IIEDVTFPADKARYLTTAL-RMIRDKVGWLSLSHLKGLTVDQARWELQALPGVGVKVAAC 138
Query: 515 V-RLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLC 573
V L A VD++V R+A R+G V + Y L + W
Sbjct: 139 VLNFSDLAMRALVVDSHVDRVAKRIGLVGAGDTTHT--------YHTLMGLAPDAW---- 186
Query: 574 KLDQRTLYELHYQMIT-FGKVFCTKSKPNCNACPMRGEC 611
L+ELH+ M G++ C P C ACP++ C
Sbjct: 187 --TADDLFELHWLMKRGLGQMLCPHEGPKCGACPVKAMC 223
>gi|440638042|gb|ELR07961.1| hypothetical protein GMDG_02820 [Geomyces destructans 20631-21]
Length = 696
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 58/145 (40%), Gaps = 39/145 (26%)
Query: 437 KDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRL------------------- 477
K S++W VR ADV I IK G+ + IK L+ +
Sbjct: 436 KGSVNWNKVREADVKDIEAAIKRGGLGKSKSIDIKKILDMVHDENIARREAFLKEKESGE 495
Query: 478 --------------------VRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRL 517
V D + L+++ + PD+A E + G+G+K+ CV L
Sbjct: 496 KANVVGGESFKQGQKDMEIAVADKEILSLQYMHGLTPDEAMEEFTKYPGIGVKTASCVIL 555
Query: 518 LTLHHLAFPVDTNVGRIAVRLGWVP 542
L +F VDT++ R+ L W+P
Sbjct: 556 FCLRRPSFAVDTHIFRLCRWLKWIP 580
>gi|116193597|ref|XP_001222611.1| hypothetical protein CHGG_06516 [Chaetomium globosum CBS 148.51]
gi|88182429|gb|EAQ89897.1| hypothetical protein CHGG_06516 [Chaetomium globosum CBS 148.51]
Length = 549
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 63/148 (42%), Gaps = 15/148 (10%)
Query: 414 FDWDSLR--------RQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNM 465
+W+ +R + ++ G R +H K LD K+ E G
Sbjct: 317 INWEKVRLSTHAELTQVIKVAGNGPNRSQHIKRILDMVHEENVQRAKMQRPETEAGQTQA 376
Query: 466 LAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAF 525
+A K L+ L DH +R + D+A LS+ G+G+K+ CV L L F
Sbjct: 377 VAEAGKTALHLLSLDH-------MRAMSKDEAMAKFLSYPGIGIKTAACVTLFCLQKPCF 429
Query: 526 PVDTNVGRIAVRLGWVPLQPLPESLQLH 553
VDT+V + LGWVP + P++ H
Sbjct: 430 AVDTHVHKFCRWLGWVPDKADPDNCFRH 457
>gi|448358879|ref|ZP_21547553.1| HhH-GPD family protein [Natrialba chahannaoensis JCM 10990]
gi|445644559|gb|ELY97572.1| HhH-GPD family protein [Natrialba chahannaoensis JCM 10990]
Length = 299
Score = 55.5 bits (132), Expect = 1e-04, Method: Composition-based stats.
Identities = 51/175 (29%), Positives = 74/175 (42%), Gaps = 24/175 (13%)
Query: 444 AVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDL--EWLRDVPPDKAKEYL 501
A+ A+ +++A TI G+ N + + + + GS ++ D PD +E L
Sbjct: 122 ALAHAEQSQLAETISSAGLYNQKSEMLIGAAEWVCDEFGSAAEFDRFVTDEAPDTVRETL 181
Query: 502 LSFRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
L RG+G K+ +CV L FPVDT+V RI R+G P + E ++ L P
Sbjct: 182 LDVRGVGPKTADCVLLFAGGRGGVFPVDTHVHRIYRRMGIAPAEADHEEVRAVLEAEVPA 241
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGEC 611
+ C H I FG+ CT KP C ACPM C
Sbjct: 242 AK----------CGFG-------HTATIQFGRECCTARKPACLEDPEACPMADIC 279
>gi|347525379|ref|YP_004832127.1| endonuclease III / DNA lyase [Lactobacillus ruminis ATCC 27782]
gi|345284338|gb|AEN78191.1| endonuclease III / DNA lyase [Lactobacillus ruminis ATCC 27782]
Length = 213
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 71/171 (41%), Gaps = 34/171 (19%)
Query: 448 ADVNKIANTIKERGMNN----MLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLS 503
AD +++ IK G+ + L G KD + R D K +E L+
Sbjct: 68 ADPSEVEKYIKTIGLYHNKAKYLVGCAKDLVERF-------------DGKVPKTREELMD 114
Query: 504 FRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLES 563
G+G K+ AF VDT+V R+A RL V +P L++ ++E
Sbjct: 115 LTGVGRKTANVELAECFGIPAFAVDTHVSRVANRLALV--EPTKNVLEIE----RQLMEQ 168
Query: 564 IQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
+ + W E H+ +I +G+ C KP C CP+ EC++F
Sbjct: 169 VDESRW-----------IEAHHLLIAWGRNQCLARKPKCETCPLSFECKYF 208
>gi|452988619|gb|EME88374.1| hypothetical protein MYCFIDRAFT_25275 [Pseudocercospora fijiensis
CIRAD86]
Length = 470
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 34/140 (24%)
Query: 437 KDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRD---------------- 480
K S+DW+AVR A +++ I+ G+ + + I++ L +
Sbjct: 225 KGSVDWDAVRRAPNHEVFKAIERGGLAKIKSKDIQEILQMAYEENQERRSALTSPSGDPA 284
Query: 481 ------------------HGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHH 522
+ L+ L + ++A E +LSF G+G K+ CV L L
Sbjct: 285 GAEHEPESEKQEEIAKAKQNVISLDHLHLLSTNEAIEKMLSFPGIGPKTASCVALFCLQR 344
Query: 523 LAFPVDTNVGRIAVRLGWVP 542
+F VDT+V R+ LGWVP
Sbjct: 345 PSFAVDTHVFRLCQYLGWVP 364
>gi|193212151|ref|YP_001998104.1| endonuclease III [Chlorobaculum parvum NCIB 8327]
gi|193085628|gb|ACF10904.1| endonuclease III [Chlorobaculum parvum NCIB 8327]
Length = 214
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 73/178 (41%), Gaps = 27/178 (15%)
Query: 434 EHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVP 493
E K + D EA+ DV+ I I+ N A I RLV + G DVP
Sbjct: 56 ELFKAAPDAEAMSRMDVDDIKTIIRPINYYNNKAKNILAMSQRLVDEFGG-------DVP 108
Query: 494 PDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 553
++E L S G+G K+ V PVDT+V R++ R+G PE +
Sbjct: 109 --ASREALESLPGVGRKTANVVLSNAFGVPTMPVDTHVHRVSNRIGLCKTSK-PEQTEEA 165
Query: 554 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
LL++ P + + + H+ ++ G+ C KP C+ CP+ C
Sbjct: 166 LLKIIP-----------------ESRMIDFHHYLVLHGRYTCKAKKPECSKCPIIEAC 206
>gi|83816451|ref|YP_446456.1| endonuclease III [Salinibacter ruber DSM 13855]
gi|83757845|gb|ABC45958.1| endonuclease III [Salinibacter ruber DSM 13855]
Length = 324
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 18/115 (15%)
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPL-PESLQLHLLELYP 559
L + G+G K+ V + A PVDT+V R+A R+G V P+ ++ L + P
Sbjct: 154 LETLTGVGRKTARVVAQVAHDADALPVDTHVFRVANRIGLVKEDATTPKKVEQQLKRVIP 213
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
E W E H+ +I G+ CT P+C+ CP+ EC+H+
Sbjct: 214 KAE------WG-----------EAHHLLILHGRYTCTARSPDCHDCPIHEECKHY 251
>gi|312128249|ref|YP_003993123.1| hhh-gpd family protein [Caldicellulosiruptor hydrothermalis 108]
gi|311778268|gb|ADQ07754.1| HhH-GPD family protein [Caldicellulosiruptor hydrothermalis 108]
Length = 235
Score = 55.5 bits (132), Expect = 1e-04, Method: Composition-based stats.
Identities = 48/164 (29%), Positives = 72/164 (43%), Gaps = 15/164 (9%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
K++ IK G N A R+K+F N L R+ S DLE L + ++ LLS +G+G ++
Sbjct: 83 KLSELIKPAGYYNQKAKRLKEFCNFLKREFNS-DLEKLFALDISSLRQVLLSQKGIGFET 141
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
+ + L F VD+ R+ RLG L ES + E IQ +
Sbjct: 142 ADSIILYGAEKPIFVVDSYTKRLFYRLG------LIESEKAK-------YEDIQNLVMQN 188
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFA 615
L +LD E H ++ K C KP C C + C + +
Sbjct: 189 L-ELDTYIFNEFHALIVKHCKERCKSKKPMCKNCCLSAFCIYLS 231
>gi|227528843|ref|ZP_03958892.1| DNA-(apurinic or apyrimidinic site) lyase [Lactobacillus vaginalis
ATCC 49540]
gi|227351236|gb|EEJ41527.1| DNA-(apurinic or apyrimidinic site) lyase [Lactobacillus vaginalis
ATCC 49540]
Length = 213
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 56/120 (46%), Gaps = 18/120 (15%)
Query: 494 PDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 553
P KE L S G+G K V + AFPVDT+V R+A RLG V +P LQ+
Sbjct: 106 PHTMKE-LTSLAGVGRKVANVVLAECFNIPAFPVDTHVSRVARRLGMV--KPNATVLQIE 162
Query: 554 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
+ E++ K W LD H+ MI FG+ CT P C CP+ C++
Sbjct: 163 ----KRLKEAVPKDEW-----LDA------HHAMIFFGRYQCTAKNPKCTKCPLLPICKY 207
>gi|410668198|ref|YP_006920569.1| ultraviolet N-glycosylase/AP lyase Pdg [Thermacetogenium phaeum DSM
12270]
gi|409105945|gb|AFV12070.1| ultraviolet N-glycosylase/AP lyase Pdg [Thermacetogenium phaeum DSM
12270]
Length = 219
Score = 55.5 bits (132), Expect = 1e-04, Method: Composition-based stats.
Identities = 49/177 (27%), Positives = 73/177 (41%), Gaps = 27/177 (15%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
D A+ A V+++A+ IK G+ A + ++ +HG +VP D
Sbjct: 67 DVTALARASVDEVADVIKSTGLYRSKAAHLVAAAKKIAAEHGG-------EVPSDLHP-- 117
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
LL G+G K+ V VDT+V R+A R+G + PE + L EL P
Sbjct: 118 LLELPGVGRKTANVVLANAFGKPGLGVDTHVHRVANRIGLCS-EKHPEGTEKRLKELLP- 175
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASA 617
+R H+ +I G+ FC KP C +C +R CR SA
Sbjct: 176 ----------------ERDWGRAHHLLIFHGRRFCRARKPECPSCVLRDICRSSPSA 216
>gi|296133481|ref|YP_003640728.1| HhH-GPD family protein [Thermincola potens JR]
gi|296032059|gb|ADG82827.1| HhH-GPD family protein [Thermincola potens JR]
Length = 232
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 75/174 (43%), Gaps = 18/174 (10%)
Query: 440 LDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRD-HGSVDLEWLRDVPPDKAK 498
L EA+ A + +I I M A +++ F+N ++ + HG +D +D ++ +
Sbjct: 65 LTLEAMYKAPIEEIEKHIVPTLYWRMKAKKLRAFVNHIMDNYHGDLDKFLQKD--KEELR 122
Query: 499 EYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY 558
LLS G+G ++ + + L F VD RI RLG+ + +Q ++
Sbjct: 123 RELLSLYGIGPETADSIILYAAEQPVFVVDAYTRRIFHRLGFFEESVSYDEMQQFFMKHI 182
Query: 559 PVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
P D R E H ++ G FC+ KP+C CP++ CR
Sbjct: 183 PP---------------DVRYYNEYHALIVGIGNRFCSNKKPDCGNCPIQSVCR 221
>gi|317128625|ref|YP_004094907.1| endonuclease III [Bacillus cellulosilyticus DSM 2522]
gi|315473573|gb|ADU30176.1| endonuclease III [Bacillus cellulosilyticus DSM 2522]
Length = 221
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 26/165 (15%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
A ++++ N I+ G+ A IK L+ D+ ++P +K++ L+ G+
Sbjct: 68 APLDELENDIRSIGLFRSKAKNIKKLCQSLIEDYNG-------EIPKEKSE--LVKLAGV 118
Query: 508 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 567
G K+ V + + A VDT+V R++ RLG + VLE ++K
Sbjct: 119 GRKTANVVASVAFNEPAIAVDTHVERVSKRLGICRWKD-------------SVLE-VEKT 164
Query: 568 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
L +L K + H+++I FG+ C P CN CP+ CR
Sbjct: 165 LMKKLPKEEWSVS---HHRLIFFGRYHCKAQSPRCNECPLLSLCR 206
>gi|384440189|ref|YP_005654913.1| Endonuclease III [Thermus sp. CCB_US3_UF1]
gi|359291322|gb|AEV16839.1| Endonuclease III [Thermus sp. CCB_US3_UF1]
Length = 215
Score = 55.5 bits (132), Expect = 1e-04, Method: Composition-based stats.
Identities = 47/169 (27%), Positives = 70/169 (41%), Gaps = 27/169 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
EA+ A + I+ G+ A + RLV +HG +VP DK + L+
Sbjct: 68 EALAAASPEAVEPYIRRIGLYKTKAKNLVALARRLVAEHGG-------EVPRDK--KALM 118
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
+ G+G K+ V VDT+V R++ RLG + L PE + L L+P
Sbjct: 119 ALPGVGWKTATVVLGAAFGVPGIAVDTHVARVSRRLG-LSLAKRPEQVGAELEALFP--- 174
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
K W LH+ ++ G+ CT KP C CP+ C
Sbjct: 175 ---KEDW-----------VFLHHALVLHGRYVCTARKPRCRDCPLAPSC 209
>gi|222479474|ref|YP_002565711.1| HhH-GPD family protein [Halorubrum lacusprofundi ATCC 49239]
gi|222452376|gb|ACM56641.1| HhH-GPD family protein [Halorubrum lacusprofundi ATCC 49239]
Length = 233
Score = 55.5 bits (132), Expect = 1e-04, Method: Composition-based stats.
Identities = 42/164 (25%), Positives = 72/164 (43%), Gaps = 18/164 (10%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHG-SVDLEWLRDVPPDKAKE 499
D+ A+ AD ++ TI+ G+ + A RI+ L + + G + L +L + D AKE
Sbjct: 73 DFAAIEAADHEELKETIRVAGLADQKAARIQRALAAIREETGGAYSLAFLDAMATDDAKE 132
Query: 500 YLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
+L+ +G+G K+ V VDT+V R++ R G VP ++ L +L P
Sbjct: 133 WLMEIKGVGPKTASVVLNFHFGKPTMAVDTHVERVSKRFGLVPESASNQAAHDALDKLVP 192
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCN 603
+Y LH +I G+ C+ +C+
Sbjct: 193 -----------------DELIYPLHVLLIRHGRERCSARGADCD 219
>gi|283768320|ref|ZP_06341232.1| endonuclease III [Bulleidia extructa W1219]
gi|283104712|gb|EFC06084.1| endonuclease III [Bulleidia extructa W1219]
Length = 213
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 71/172 (41%), Gaps = 28/172 (16%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLV-RDHGSVDLEWLRDVPPDKAKE 499
+ E++ A ++ + I G+ A I F +V R HG ++P + E
Sbjct: 60 NLESLANAKAREVESYIARLGLYRAKAANIIGFAKGVVDRFHG--------EIP--SSME 109
Query: 500 YLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
L S G+G K ++ H + VDT+V RIA RLG V + E ++ L + P
Sbjct: 110 DLTSLPGVGRKCANVIQGECFHLPSLAVDTHVSRIAKRLGLVYQKDSVEVIERKLKKKLP 169
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
K W + H+QMI FG+ C KP C CP C
Sbjct: 170 ------KERWTKA-----------HHQMIFFGRYLCQARKPQCYRCPFVEHC 204
>gi|336121084|ref|YP_004575859.1| HhH-GPD family protein [Methanothermococcus okinawensis IH1]
gi|334855605|gb|AEH06081.1| HhH-GPD family protein [Methanothermococcus okinawensis IH1]
Length = 217
Score = 55.5 bits (132), Expect = 2e-04, Method: Composition-based stats.
Identities = 42/183 (22%), Positives = 78/183 (42%), Gaps = 17/183 (9%)
Query: 437 KDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDK 496
+D +D + + + K+ IK G N+ A R+K+ +V ++ + D + +
Sbjct: 50 EDLIDEKRILKINTEKLKELIKPAGFYNIKAERLKNITKYIVDNYKTTDELAKTEKDTNI 109
Query: 497 AKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLE 556
+ LL+ +G+G ++ + + L L F VD RI R G + + ++L +
Sbjct: 110 LRNELLNIKGVGKETADSILLYALDRKIFVVDAYTRRIFSRYGIINKDMDYDEIRLIFED 169
Query: 557 -LYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFA 615
+ P L ++Y H ++ GK +C K P CN CP+ CR
Sbjct: 170 NIIPSLNIYKEY----------------HALIVELGKNYCKKKNPLCNTCPLNLYCRKLF 213
Query: 616 SAF 618
+ F
Sbjct: 214 NKF 216
>gi|399069064|ref|ZP_10749265.1| putative endoIII-related endonuclease [Caulobacter sp. AP07]
gi|398045317|gb|EJL38052.1| putative endoIII-related endonuclease [Caulobacter sp. AP07]
Length = 242
Score = 55.5 bits (132), Expect = 2e-04, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 14/135 (10%)
Query: 478 VRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLK-SVECVRLLTLHHLAFPVDTNVGRIAV 536
VR + L+ L ++ D A+ +L G+G+K + + L+ A VDT+V R+A
Sbjct: 103 VRSGWKLSLDHLSELELDSARWWLQGLPGVGVKVAASVLNFSPLNMRALVVDTHVHRVAG 162
Query: 537 RLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCT 596
RLG +P L++L P + + LYELH+ M G++ C
Sbjct: 163 RLGLIPASYDTAHAYRALMDLVPDSWTAED-------------LYELHWLMKGLGQLLCG 209
Query: 597 KSKPNCNACPMRGEC 611
P C AC ++ C
Sbjct: 210 HHAPRCGACSLKATC 224
>gi|338731336|ref|YP_004660728.1| endonuclease III [Thermotoga thermarum DSM 5069]
gi|335365687|gb|AEH51632.1| endonuclease III [Thermotoga thermarum DSM 5069]
Length = 208
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 73/175 (41%), Gaps = 27/175 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
E++ A +I + IK GM A RI + ++ + VP D + LL
Sbjct: 59 ESLAKAKPEEIYDLIKPSGMYRQKAERIIEVSKIILEKYNG-------KVPSDL--DELL 109
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
G+G K+ V A VDT+V RI+ RLG+V + PE + L ++ P
Sbjct: 110 KLPGVGRKTANIVLFQGFSIPAIAVDTHVHRISNRLGFVKTK-TPEQTEEELSKVLP--- 165
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASA 617
K LW ++ M+ FG+ C P C CP EC++ SA
Sbjct: 166 ---KRLWG-----------PINVAMVNFGRNICLPRNPRCEKCPFSKECKYHNSA 206
>gi|10640069|emb|CAC11921.1| endonuclease III related protein [Thermoplasma acidophilum]
Length = 197
Score = 55.5 bits (132), Expect = 2e-04, Method: Composition-based stats.
Identities = 47/181 (25%), Positives = 80/181 (44%), Gaps = 27/181 (14%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
D + + AD +++ I + G + + ++ + + R++RD + + PD E
Sbjct: 42 DIDGLADADPDEVGRIISKVGFWRVKSRKVVE-IARIIRDRYNYRV-------PDSIDE- 92
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
L+S G+GLK+ + V + A VDT+V RI+ R+GW + PE L + PV
Sbjct: 93 LVSLPGVGLKTAKVVLAEGFNRPAIAVDTHVFRISHRIGWSSART-PEETSEELERIIPV 151
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFAS 620
+Q P M+ FGK C +P C+ CP+ CR++
Sbjct: 152 --DLQVGFNP---------------MMVEFGKAICRPVRPLCDRCPVSEYCRYYEEKVKD 194
Query: 621 S 621
S
Sbjct: 195 S 195
>gi|386811544|ref|ZP_10098769.1| putative glycosylase [planctomycete KSU-1]
gi|386403814|dbj|GAB61650.1| putative glycosylase [planctomycete KSU-1]
Length = 214
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 85/167 (50%), Gaps = 19/167 (11%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDH-GSVDLEWLRDVPPDKAKEYL 501
EA+ +V +++ I+ G N+ A RIK F++ L ++ GS+ + +D+ +++ L
Sbjct: 63 EAIHELNVTELSQLIRPSGFFNVKARRIKTFMDWLFSNYGGSLSRLFAQDLQTLRSE--L 120
Query: 502 LSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 561
L+ +G+G ++ + + L + F VDT RI R G++P + + ++ L E
Sbjct: 121 LAVKGIGPETADSILLYAGNLPTFVVDTYTYRIFSRHGFIPEESSYDEIK-SLFE----- 174
Query: 562 ESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMR 608
E++ K D + E H ++ GK+FC K K C CP++
Sbjct: 175 ENLPK---------DVKLFNEYHALLVNTGKMFC-KPKKFCEQCPLK 211
>gi|119467552|ref|XP_001257582.1| hypothetical protein NFIA_050280 [Neosartorya fischeri NRRL 181]
gi|119405734|gb|EAW15685.1| conserved hypothetical protein [Neosartorya fischeri NRRL 181]
Length = 473
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 75/203 (36%), Gaps = 56/203 (27%)
Query: 437 KDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFL-----------NRLVR------ 479
K S++W+A+R A + + IK G+ ++ + +IK L N LV+
Sbjct: 239 KGSVNWDAIRQAPLKDVFEAIKRGGLADIKSKKIKAILDMVYQENQERKNILVKGESDGS 298
Query: 480 ------------------DHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLH 521
D + L L + + A L+ + G+G K+ CV L L
Sbjct: 299 SDLTANTEGEKEYEIACADQNFLSLNHLHTLSTEDAMTELVKYPGIGPKTAACVILFCLQ 358
Query: 522 HLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLY 581
F VDT++ RI LGWVP E LE+ ++ Y
Sbjct: 359 RPCFAVDTHIFRICKWLGWVPPGKATEVTAFSHLEV----------------RIPDHLKY 402
Query: 582 ELHYQMITFGKVFCTKSKPNCNA 604
LH +I GK P C A
Sbjct: 403 SLHQLLIRHGKTC-----PRCRA 420
>gi|300770189|ref|ZP_07080068.1| DNA-(apurinic or apyrimidinic site) lyase [Sphingobacterium
spiritivorum ATCC 33861]
gi|300762665|gb|EFK59482.1| DNA-(apurinic or apyrimidinic site) lyase [Sphingobacterium
spiritivorum ATCC 33861]
Length = 228
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 72/176 (40%), Gaps = 26/176 (14%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
EA+ A V+++ + I+ N A + N L+ E + D L+
Sbjct: 63 EALAAASVDEVFSYIRSVSYPNNKAKHLVGMANMLIEKFNGEVPEQIED---------LI 113
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
G+G K+ + + + A VDT+V R++ RLG P +++ L++ P
Sbjct: 114 KLPGVGRKTANVISSVVYNKPAMAVDTHVFRVSNRLGLTSRATTPLAVEKQLVKFLP--- 170
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAF 618
+ T+ H+ +I G+ C KP C CP+ C+++ + F
Sbjct: 171 --------------EETIAVAHHWLILHGRYICLARKPKCEICPITYMCKYYETQF 212
>gi|227494411|ref|ZP_03924727.1| endonuclease III [Actinomyces coleocanis DSM 15436]
gi|226832145|gb|EEH64528.1| endonuclease III [Actinomyces coleocanis DSM 15436]
Length = 226
Score = 55.1 bits (131), Expect = 2e-04, Method: Composition-based stats.
Identities = 46/172 (26%), Positives = 73/172 (42%), Gaps = 27/172 (15%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
AD +A+ + G N A ++++ LV E+ +VP ++ E L G+
Sbjct: 82 ADHADLASITRVLGFQNKRATQLQELSQALVA-------EYAGEVPANR--EALQKLPGV 132
Query: 508 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 567
G K+ V A VDT+VGR+ RLGW + P +++ + +L P Y
Sbjct: 133 GRKTAHVVLGNAFGIPAITVDTHVGRVTTRLGWSQAKT-PLAIEKDIAKLLP------GY 185
Query: 568 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFA 619
W LC +++I G+ C KP C CP++ C A A
Sbjct: 186 DWTLLC-----------HRLIEHGRAICDARKPLCGQCPLQQLCPASADYLA 226
>gi|159122487|gb|EDP47608.1| conserved hypothetical protein [Aspergillus fumigatus A1163]
Length = 470
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 76/200 (38%), Gaps = 53/200 (26%)
Query: 437 KDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDH-------------GS 483
K S++W+AVR A + + IK G+ + + +IK L+ + +++ GS
Sbjct: 239 KGSVNWDAVRQAPLKDVFEAIKRGGLAEIKSRKIKAILDMVYQENQERKEFLVKGESDGS 298
Query: 484 VD-------------------LEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLA 524
D L L + + A L+ + G+G K+ CV L L
Sbjct: 299 SDLMPGEKEYEIACADQNFLSLNHLHTLSTEDAMTELVKYPGIGPKTAACVILFCLQRPC 358
Query: 525 FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELH 584
F VDT++ RI LGWVP E LE+ ++ Y LH
Sbjct: 359 FAVDTHIFRICKWLGWVPPGKATEVTAFSHLEV----------------RIPDHLKYSLH 402
Query: 585 YQMITFGKVFCTKSKPNCNA 604
+I GK P C A
Sbjct: 403 QLLIRHGKTC-----PRCRA 417
>gi|157364361|ref|YP_001471128.1| endonuclease III [Thermotoga lettingae TMO]
gi|157314965|gb|ABV34064.1| endonuclease III [Thermotoga lettingae TMO]
Length = 217
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 72/176 (40%), Gaps = 27/176 (15%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
D ++ A ++I + IK GM A RI +V L D
Sbjct: 60 DVYSLSMAKPSQIYDLIKASGMYRQKAERIIKVSQIIVEKFNGKIPANLHD--------- 110
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
LLS G+G K+ V A VDT+V RI+ RLG+V + PE + L ++ P
Sbjct: 111 LLSLPGVGRKTANIVLYHCFCQPALAVDTHVHRISNRLGFVKTK-TPEQTEEGLKKIIP- 168
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFAS 616
+K+ P ++ M+ FGK C KP C CP+ C +F S
Sbjct: 169 ----EKFWGP------------INGAMVEFGKKVCLPRKPKCQECPVNKYCEYFNS 208
>gi|16082555|ref|NP_394252.1| endonuclease III [Thermoplasma acidophilum DSM 1728]
Length = 217
Score = 55.1 bits (131), Expect = 2e-04, Method: Composition-based stats.
Identities = 47/181 (25%), Positives = 80/181 (44%), Gaps = 27/181 (14%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
D + + AD +++ I + G + + ++ + + R++RD + + PD E
Sbjct: 62 DIDGLADADPDEVGRIISKVGFWRVKSRKVVE-IARIIRDRYNYRV-------PDSIDE- 112
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
L+S G+GLK+ + V + A VDT+V RI+ R+GW + PE L + PV
Sbjct: 113 LVSLPGVGLKTAKVVLAEGFNRPAIAVDTHVFRISHRIGWSSART-PEETSEELERIIPV 171
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFAS 620
+Q P M+ FGK C +P C+ CP+ CR++
Sbjct: 172 --DLQVGFNP---------------MMVEFGKAICRPVRPLCDRCPVSEYCRYYEEKVKD 214
Query: 621 S 621
S
Sbjct: 215 S 215
>gi|23098497|ref|NP_691963.1| DNA-lyase [Oceanobacillus iheyensis HTE831]
gi|22776723|dbj|BAC12998.1| DNA-(apurinic or apyrimidinic site) lyase [Oceanobacillus iheyensis
HTE831]
Length = 222
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 19/161 (11%)
Query: 451 NKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLK 510
N++A I+ G + A RIK F+ + + V + ++ +P DK + LLS +G+G +
Sbjct: 69 NELAEKIRPSGFYRIKAARIKAFITWFRKYNYDVSI--VQQIPHDKLRSELLSIKGIGDE 126
Query: 511 SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP 570
+ + + + AF D RI R+G L++ Y L+ + + P
Sbjct: 127 TADVMLVYAFKKQAFIADQYANRIFNRIG------------LNVPSTYRSLQKVVERDLP 174
Query: 571 RLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
L Q E H ++ K+ C K KP CN CP++ C
Sbjct: 175 NDSLLYQ----EYHALLVEHAKIHC-KVKPICNTCPVQTIC 210
>gi|325968642|ref|YP_004244834.1| HhH-GPD family protein [Vulcanisaeta moutnovskia 768-28]
gi|323707845|gb|ADY01332.1| HhH-GPD family protein [Vulcanisaeta moutnovskia 768-28]
Length = 230
Score = 55.1 bits (131), Expect = 2e-04, Method: Composition-based stats.
Identities = 45/169 (26%), Positives = 70/169 (41%), Gaps = 20/169 (11%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
E + D N +A IK A R+ F + G L DV +++LL
Sbjct: 75 EVIANTDPNYLAEVIKGVNYRFTKAQRLVKFAKNVTMIGGLGKLRLRGDV-----RDFLL 129
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
+ G+G ++ + + L L+ P+ R+ RL L L L + Y + +
Sbjct: 130 NQEGVGRETADSIMLFALNIPTMPISQYTKRVFSRL-----------LGLKLGDNYDMWK 178
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
+ L PR D T +H +IT GK +C + P CN CP+R C
Sbjct: 179 EFLEGLLPR----DLYTYKLIHASIITIGKKYCLPTDPLCNKCPLRDVC 223
>gi|317153228|ref|YP_004121276.1| HhH-GPD family protein [Desulfovibrio aespoeensis Aspo-2]
gi|316943479|gb|ADU62530.1| HhH-GPD family protein [Desulfovibrio aespoeensis Aspo-2]
Length = 219
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 436 TKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPD 495
+D L A+ D ++A I+ G N+ A R+++FLN + D ++E L+ D
Sbjct: 56 ARDLLSARAMHALDTGELAELIRPAGYYNIKAARLRNFLN-FLNDEAGFEIESLKTQGMD 114
Query: 496 KAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLL 555
+ + +LS G+G ++ + + L L F VD R+ R G E + H
Sbjct: 115 ELRSKVLSINGVGPETADSILLYALEMPTFVVDAYTYRMMDRHGLAH-----EGIDYH-- 167
Query: 556 ELYPVLESIQKYLWPRLCKLDQRTLY-ELHYQMITFGKVFCTKSKPNCNACPMR 608
L SI P + +LY E H ++ GK +C K C CP++
Sbjct: 168 ----GLRSIFMDALP-----EDVSLYNEFHALIVRVGKDWCRKKAGLCATCPLQ 212
>gi|320334742|ref|YP_004171453.1| iron-sulfur cluster loop [Deinococcus maricopensis DSM 21211]
gi|319756031|gb|ADV67788.1| iron-sulfur cluster loop [Deinococcus maricopensis DSM 21211]
Length = 247
Score = 54.7 bits (130), Expect = 2e-04, Method: Composition-based stats.
Identities = 53/213 (24%), Positives = 91/213 (42%), Gaps = 22/213 (10%)
Query: 403 STRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERG- 461
+ RVS E +D L +Q +++ + W+A + I +++ G
Sbjct: 43 APRVSAEPLDDLIEAVLNQQNTRATTERQYAALRRAYPTWDAALADGPDGIEAVLRDAGG 102
Query: 462 -MNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTL 520
+ + A + + L L+ + G + L+ LR + A+ L S G+G+K+ + L L
Sbjct: 103 GLARVKADYVWNILYALL-ERGDLSLQHLRHLDDADARTALESLPGVGMKTASALLLFDL 161
Query: 521 HHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY--LWPRLCKLDQR 578
A PVD ++ R++ RL +P E + VL++ + Y + PR D
Sbjct: 162 ARPAMPVDGHIDRVSKRLHLIP-------------ERWNVLKAERWYDEVLPR----DWA 204
Query: 579 TLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
Y H I G+ C P CNAC +R C
Sbjct: 205 QRYAYHVATIRHGRETCLTRAPRCNACVLRDLC 237
>gi|421874622|ref|ZP_16306225.1| endonuclease III [Brevibacillus laterosporus GI-9]
gi|372456478|emb|CCF15774.1| endonuclease III [Brevibacillus laterosporus GI-9]
Length = 190
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 26/162 (16%)
Query: 450 VNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGL 509
+ ++ + I++ G+ A I+ L+ ++G +VP E L+ G+G
Sbjct: 38 LEELQDDIRQIGLYKNKAKHIQSLCRLLLEEYGG-------EVP--NKHEELVKLPGVGR 88
Query: 510 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 569
K+ V + A VDT+V RI+ RLG+ P P ++ L++
Sbjct: 89 KTANVVVSVAFGVPAIAVDTHVERISKRLGFCPDDATPVQVEEILMK------------- 135
Query: 570 PRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
K+ ++ + H++MI FG+ C P C+ CP+ C
Sbjct: 136 ----KIPKKDWSDTHHRMIFFGRYHCKAQSPQCDICPLEDVC 173
>gi|21227382|ref|NP_633304.1| endonuclease III [Methanosarcina mazei Go1]
gi|20905743|gb|AAM30976.1| Endonuclease III [Methanosarcina mazei Go1]
Length = 205
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 72/165 (43%), Gaps = 28/165 (16%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
A+V I I++ G + AGRIK+ L+ D+ VP D E LL G+
Sbjct: 63 ANVEDIEELIRDVGFYRVKAGRIKEISRILLEDYNG-------KVPDD--METLLKLPGV 113
Query: 508 GLKSVECVRL-LTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQK 566
G K+ CV L A VDT+V RI+ RLG V + PE ++ L +L P QK
Sbjct: 114 GRKTANCVLAHAFLKEDALAVDTHVHRISNRLGRVVTKN-PEETEMELKKLLP-----QK 167
Query: 567 YLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
Y W ++ ++ FG+ C P C C + C
Sbjct: 168 Y-W-----------RHVNILLVKFGQNVCRPISPRCGICILNDIC 200
>gi|325283633|ref|YP_004256174.1| iron-sulfur cluster loop [Deinococcus proteolyticus MRP]
gi|324315442|gb|ADY26557.1| iron-sulfur cluster loop [Deinococcus proteolyticus MRP]
Length = 227
Score = 54.7 bits (130), Expect = 3e-04, Method: Composition-based stats.
Identities = 50/178 (28%), Positives = 75/178 (42%), Gaps = 29/178 (16%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGR----IKDFLNRLVRDHGSVDLEWLRDVPPDKA 497
WEA A+ +I + RG LA + L RL + G L +L +PP +A
Sbjct: 58 WEAALLAEPEEIETVL--RGAGGGLACSKSRAVWGILRRLEEERGRPSLRFLHRLPPAEA 115
Query: 498 KEYLLSFRGLGLKSVECVRLLTLHHLAFP---VDTNVGRIAVRLGWVPLQPLPESLQLHL 554
+ L + G+G ++ LL L HLA P VD+N+ R+ RL VP
Sbjct: 116 RTVLQALPGVGQRTAS---LLLLFHLAQPAAAVDSNIERLLHRLEVVP------------ 160
Query: 555 LELYPVLESIQKYLWPR-LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
P ++ ++ LW + D H + G+ CT+ P C AC +R C
Sbjct: 161 ----PGWKADRQELWLEGVLPADAPLRAAFHRAGVRHGREICTRHAPRCPACVLREWC 214
>gi|57641076|ref|YP_183554.1| endonuclease III [Thermococcus kodakarensis KOD1]
gi|57159400|dbj|BAD85330.1| endonuclease III [Thermococcus kodakarensis KOD1]
Length = 246
Score = 54.7 bits (130), Expect = 3e-04, Method: Composition-based stats.
Identities = 40/153 (26%), Positives = 63/153 (41%), Gaps = 34/153 (22%)
Query: 494 PDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 553
PD E L+ G+G K V A PVDT+V RI+ RLG P + PE ++ +
Sbjct: 125 PDDIHE-LMKLPGIGRKCANIVLAYGFGKQAIPVDTHVNRISKRLGLAPPRVAPEKVEEY 183
Query: 554 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
L L P +K+++ +++ M+ G+ C P C CP+R C
Sbjct: 184 LTALIPK----EKWIY-------------VNHAMVDHGRSICRPINPKCEECPLREFC-- 224
Query: 614 FASAFASSRLALPGPEEKAIVSANENRTNTQNP 646
P K +V+ + + N + P
Sbjct: 225 --------------PYAKGLVTDEDIKGNARKP 243
>gi|227538653|ref|ZP_03968702.1| DNA-(apurinic or apyrimidinic site) lyase [Sphingobacterium
spiritivorum ATCC 33300]
gi|227241572|gb|EEI91587.1| DNA-(apurinic or apyrimidinic site) lyase [Sphingobacterium
spiritivorum ATCC 33300]
Length = 228
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 73/179 (40%), Gaps = 26/179 (14%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
EA+ A V+++ + I+ N A + N L+ E + D L+
Sbjct: 63 EALAVASVDEVFSYIRSVSYPNNKAKHLVGMANMLIEKFNGEVPEQIED---------LI 113
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
G+G K+ + + + A VDT+V R++ RLG P +++ L++ P
Sbjct: 114 KLPGVGRKTANVISSVVYNKPAMAVDTHVFRVSNRLGLTSRATTPLAVEKQLVKFLP--- 170
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASS 621
+ T+ H+ +I G+ C KP C CP+ C+++ + F +
Sbjct: 171 --------------EETIAVAHHWLILHGRYICLARKPKCEICPITYMCKYYETQFLKT 215
>gi|409095774|ref|ZP_11215798.1| endonuclease III [Thermococcus zilligii AN1]
Length = 242
Score = 54.7 bits (130), Expect = 3e-04, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 18/118 (15%)
Query: 494 PDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 553
P+ E L+ G+G K V A PVDT+V RI+ RLG P PE ++ +
Sbjct: 118 PEDINE-LMKLPGIGRKCANIVLAYGFGKQAIPVDTHVNRISKRLGLAPPGVAPEKVEEY 176
Query: 554 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
L L P + + +Y +++ M+ G+ C KP C+ CP+R C
Sbjct: 177 LAGLIP----------------EDKWIY-VNHAMVDHGRSICRPIKPKCDECPLRELC 217
>gi|330836808|ref|YP_004411449.1| DNA-(apurinic or apyrimidinic site) lyase [Sphaerochaeta coccoides
DSM 17374]
gi|329748711|gb|AEC02067.1| DNA-(apurinic or apyrimidinic site) lyase [Sphaerochaeta coccoides
DSM 17374]
Length = 224
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 70/171 (40%), Gaps = 27/171 (15%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
D ++ AD+NK+ I+ G N A I D L + +G W+ P +E
Sbjct: 66 DVRSLAGADINKVKEIIRSTGHFNTKARHIIDCATILQKTYGG----WI----PSTMEE- 116
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
L + G+G K+ CV VDT+ GR++ RL V PE ++ + EL P
Sbjct: 117 LTALPGVGRKTASCVLGEVYGQPVIIVDTHFGRVSQRLELV-TSARPEIIEQQMKELLP- 174
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
+Q Y + FG+ CT KP C+ CP+ C
Sbjct: 175 -PDMQ---------------YRFSMTLNLFGRNCCTARKPQCHNCPLYALC 209
>gi|402846670|ref|ZP_10894979.1| endonuclease III [Porphyromonas sp. oral taxon 279 str. F0450]
gi|402267362|gb|EJU16757.1| endonuclease III [Porphyromonas sp. oral taxon 279 str. F0450]
Length = 220
Score = 54.7 bits (130), Expect = 3e-04, Method: Composition-based stats.
Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 26/169 (15%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
A+V+ I ++ AG + RLV D+ +VP ++ E L+ G+
Sbjct: 68 AEVDDIFELVRSVSYPRAKAGYLVAMAQRLVADYQG-------EVPEER--EELMKLPGV 118
Query: 508 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 567
G K+ + + + VDT+V R++ R+G P +L L++ P ++
Sbjct: 119 GRKTANVIASVIYNRPTMAVDTHVFRVSNRIGLTTNSKTPLETELTLIKYIP------EH 172
Query: 568 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFAS 616
L P+ H+ +I G+ CT KP C C + CR+FA+
Sbjct: 173 LIPKA-----------HHWLILHGRYVCTARKPQCMTCGLAPYCRYFAA 210
>gi|386714544|ref|YP_006180867.1| endonuclease III [Halobacillus halophilus DSM 2266]
gi|384074100|emb|CCG45593.1| endonuclease III [Halobacillus halophilus DSM 2266]
Length = 220
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 70/165 (42%), Gaps = 26/165 (15%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
+ ++ N IK G+ A IK LV VPP KE L S G+
Sbjct: 68 VSLEELQNDIKRIGLYRNKAKNIKKLSQTLVDQFNG-------QVPP--TKEELESLAGV 118
Query: 508 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 567
G K+ V + + A VDT+V R++ RLG + VLE ++K
Sbjct: 119 GRKTANVVASVAFNEPAIAVDTHVERVSKRLGICRWKD-------------SVLE-VEKT 164
Query: 568 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
L ++ K + H++MI FG+ C +PNC CP+ CR
Sbjct: 165 LMRKVPKEEWSVT---HHRMIFFGRYHCKAKRPNCEECPLLVLCR 206
>gi|332299912|ref|YP_004441833.1| endonuclease III [Porphyromonas asaccharolytica DSM 20707]
gi|332176975|gb|AEE12665.1| endonuclease III [Porphyromonas asaccharolytica DSM 20707]
Length = 219
Score = 54.7 bits (130), Expect = 3e-04, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 18/121 (14%)
Query: 498 KEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPL-PESLQLHLLE 556
+E L + G+G KS + + A PVDT+V R+A R+G + P +++ L++
Sbjct: 109 REELEALPGVGRKSASVMLAVCFETPAMPVDTHVYRVAKRIGLASSRATTPLAVEQALVK 168
Query: 557 LYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFAS 616
P Q L H+Q+I G+ C KP C C + CRH+A
Sbjct: 169 RIP-----------------QAQLIRAHHQLILLGRYICKARKPLCAECTLHACCRHYAV 211
Query: 617 A 617
A
Sbjct: 212 A 212
>gi|330995722|ref|ZP_08319620.1| endonuclease III [Paraprevotella xylaniphila YIT 11841]
gi|329574781|gb|EGG56342.1| endonuclease III [Paraprevotella xylaniphila YIT 11841]
Length = 222
Score = 54.3 bits (129), Expect = 3e-04, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 20/133 (15%)
Query: 491 DVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQ-PLPES 549
+VP D + L+ G+G K+ ++ + A VDT+V R++ R+G VP P S
Sbjct: 104 EVPSDL--DELVKLPGVGRKTANVIQAVVFEKAAMAVDTHVFRVSHRIGLVPATCTTPYS 161
Query: 550 LQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRG 609
++ L+ +P P + K H+ +I G+ CT P C AC ++
Sbjct: 162 VEKQLVRYFPA---------PIIPKA--------HHWLILHGRYTCTARTPKCEACGLKM 204
Query: 610 ECRHFASAFASSR 622
CRH+ ++R
Sbjct: 205 ICRHYLRTHGAAR 217
>gi|163785187|ref|ZP_02179872.1| endonuclease III [Hydrogenivirga sp. 128-5-R1-1]
gi|159879544|gb|EDP73363.1| endonuclease III [Hydrogenivirga sp. 128-5-R1-1]
Length = 218
Score = 54.3 bits (129), Expect = 3e-04, Method: Composition-based stats.
Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 19/137 (13%)
Query: 476 RLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIA 535
+ ++D + LE PD E LL F+G+G K+ V + A VD +V RI+
Sbjct: 93 KTIKDISKIILEKYNGKVPDTL-EKLLKFKGVGRKTANLVLSEGFNKPAICVDIHVHRIS 151
Query: 536 VRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFC 595
RLG+V + PE + L+E P +KY W ++ KL ++ FG+ C
Sbjct: 152 NRLGFVKTKT-PEKTEFALMEKLP-----EKY-WNKINKL-----------LVGFGQTIC 193
Query: 596 TKSKPNCNACPMRGECR 612
P C+ CP+ C+
Sbjct: 194 KPVSPYCSKCPVENLCK 210
>gi|41615185|ref|NP_963683.1| hypothetical protein NEQ398 [Nanoarchaeum equitans Kin4-M]
gi|40068909|gb|AAR39244.1| NEQ398 [Nanoarchaeum equitans Kin4-M]
Length = 212
Score = 54.3 bits (129), Expect = 3e-04, Method: Composition-based stats.
Identities = 45/167 (26%), Positives = 72/167 (43%), Gaps = 31/167 (18%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
D++ + A + +I + IK G+ A IK R + D ++R++P
Sbjct: 66 DYKNLAKAPIEEIEDLIKNVGLYKQKAKWIKTIAQRWDYNK-KCDESFIRNLP------- 117
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
G+G K L + VD +V RIA RLGWV + PE + L ++ P
Sbjct: 118 -----GVGRKVGNVYLNLVCNKPYIAVDVHVHRIANRLGWVKTKT-PEETEKQLYKIIP- 170
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPM 607
K WP+L ++ ++ FG+ C SKP C+ CP+
Sbjct: 171 -----KEYWPKL-----------NHMLVLFGRNICLPSKPKCDICPL 201
>gi|433462947|ref|ZP_20420515.1| endonuclease III [Halobacillus sp. BAB-2008]
gi|432188084|gb|ELK45302.1| endonuclease III [Halobacillus sp. BAB-2008]
Length = 224
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 26/163 (15%)
Query: 450 VNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGL 509
+ ++ + IK G+ A IK L+ L++ VPP + + L S G+G
Sbjct: 70 LEELQDDIKRIGLFRNKAKNIKKLSETLI-------LQFDGQVPPTQKE--LESLAGVGR 120
Query: 510 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 569
K+ V + A VDT+V R++ RLG + VLE ++K L
Sbjct: 121 KTANVVASVAFGEPAIAVDTHVERVSKRLGICRWKD-------------SVLE-VEKTL- 165
Query: 570 PRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
+ K+ + + H++MI FG+ C +PNC ACP+ CR
Sbjct: 166 --MRKIPREEWSDTHHRMIFFGRYHCKAQRPNCEACPLLDLCR 206
>gi|18977601|ref|NP_578958.1| glycosylase [Pyrococcus furiosus DSM 3638]
gi|397651727|ref|YP_006492308.1| endonuclease III [Pyrococcus furiosus COM1]
gi|18893320|gb|AAL81353.1| glycosylase putative; mutY-nth family [Pyrococcus furiosus DSM
3638]
gi|393189318|gb|AFN04016.1| endonuclease III [Pyrococcus furiosus COM1]
Length = 225
Score = 54.3 bits (129), Expect = 3e-04, Method: Composition-based stats.
Identities = 36/113 (31%), Positives = 48/113 (42%), Gaps = 17/113 (15%)
Query: 499 EYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY 558
E L+ G+G K V A PVDT+V RI+ RLG P+ PE ++ L L
Sbjct: 125 EELMKLPGIGRKCANIVLAYGFGKPAIPVDTHVYRISRRLGLAPINSTPEKVEEILKTLI 184
Query: 559 PVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
PV E I +++ M+ GK C KP C CP+ C
Sbjct: 185 PVEEWIY-----------------VNHAMVDHGKSICRPIKPKCELCPLNELC 220
>gi|331083706|ref|ZP_08332817.1| endonuclease III [Lachnospiraceae bacterium 6_1_63FAA]
gi|330403917|gb|EGG83469.1| endonuclease III [Lachnospiraceae bacterium 6_1_63FAA]
Length = 217
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 78/174 (44%), Gaps = 27/174 (15%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
D +A AD+ ++ IK G + A I R+ + + +VP ++ E
Sbjct: 60 DMQAFAKADLKELEQDIKPTGFYHNKAKNIIGCAQRICQVYSG-------EVP--RSLED 110
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
L+S G+G K+ +R H + VDT+V RI+ RLG+ + PE ++ L+++ P
Sbjct: 111 LVSLPGVGRKTANVIRGNIFHEPSVVVDTHVKRISKRLGFTKEED-PEKIEQDLMKVLP- 168
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
K W LY + Q+ITFG+ C P C C + C+ +
Sbjct: 169 -----KEHW---------ILYNI--QIITFGRQICFARSPKCEECFLTEYCKEY 206
>gi|409387026|ref|ZP_11239323.1| Endonuclease III [Lactococcus raffinolactis 4877]
gi|399205796|emb|CCK20238.1| Endonuclease III [Lactococcus raffinolactis 4877]
Length = 214
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 80/197 (40%), Gaps = 27/197 (13%)
Query: 419 LRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLV 478
L Q G K P D +++ ADV+ + N IK G+ A I V
Sbjct: 39 LSAQATDKGVNKATPALFAKYPDSQSLASADVSDVENLIKTIGLYRSKAKNI-------V 91
Query: 479 RDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRL 538
R ++ E+ ++P DK + L + G+G K+ V VDT+V R++ RL
Sbjct: 92 RTAEMIETEFGGEIPRDK--DLLQTLPGVGRKTANVVLGDAFGIPGIAVDTHVERVSKRL 149
Query: 539 GWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKS 598
V ++ L+++ P E + H+++I FG+ CT
Sbjct: 150 QLVKQSATVTEVEEKLMKVVPESEWVVT-----------------HHRLIFFGRYHCTAR 192
Query: 599 KPNCNACPMRGECRHFA 615
P C ACP+ C HF
Sbjct: 193 APKCVACPVLPYC-HFG 208
>gi|339008005|ref|ZP_08640579.1| putative endonuclease III [Brevibacillus laterosporus LMG 15441]
gi|338775208|gb|EGP34737.1| putative endonuclease III [Brevibacillus laterosporus LMG 15441]
Length = 221
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 26/162 (16%)
Query: 450 VNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGL 509
+ ++ + I++ G+ A I+ L+ ++G +VP E L+ G+G
Sbjct: 69 LEELQDDIRQIGLYKNKAKHIQSLCRLLLEEYGG-------EVP--NKHEELVKLPGVGR 119
Query: 510 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 569
K+ V + A VDT+V RI+ RLG+ P P ++ L++
Sbjct: 120 KTANVVVSVAFGVPAIAVDTHVERISKRLGFCPDDATPVQVEEILMK------------- 166
Query: 570 PRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
K+ ++ + H++MI FG+ C P C+ CP+ C
Sbjct: 167 ----KIPKKDWSDTHHRMIFFGRYHCKAQSPQCDICPLEDVC 204
>gi|323339826|ref|ZP_08080095.1| endonuclease III [Lactobacillus ruminis ATCC 25644]
gi|417974103|ref|ZP_12614927.1| endonuclease III [Lactobacillus ruminis ATCC 25644]
gi|323092699|gb|EFZ35302.1| endonuclease III [Lactobacillus ruminis ATCC 25644]
gi|346329558|gb|EGX97853.1| endonuclease III [Lactobacillus ruminis ATCC 25644]
Length = 213
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 71/171 (41%), Gaps = 34/171 (19%)
Query: 448 ADVNKIANTIKERGMNN----MLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLS 503
AD +++ IK G+ + L G +D + R D K +E L+
Sbjct: 68 ADPSEVEKYIKTIGLYHNKAKYLVGCARDLVERF-------------DGKVPKTREELME 114
Query: 504 FRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLES 563
G+G K+ AF VDT+V R+A RL V +P L++ ++E
Sbjct: 115 LTGVGRKTANVELAECFGIPAFAVDTHVSRVANRLALV--EPTKNVLEIE----RQLMEQ 168
Query: 564 IQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
+ + W E H+ +I +G+ C KP C CP+ EC++F
Sbjct: 169 VDESRW-----------IEAHHLLIAWGRHQCLARKPKCETCPLSFECKYF 208
>gi|403069784|ref|ZP_10911116.1| HhH-GPD family protein [Oceanobacillus sp. Ndiop]
Length = 213
Score = 54.3 bits (129), Expect = 3e-04, Method: Composition-based stats.
Identities = 44/170 (25%), Positives = 76/170 (44%), Gaps = 21/170 (12%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
E + ++++A I+ G N+ A RIK F+N R H ++E ++ + ++ + LL
Sbjct: 59 ELIEELSIDELAQLIRSSGYFNIKAKRIKAFMNWFKRYH--YNIEEIKKMDSNQLRYELL 116
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
G+G ++ + + L F VD RI R+G+ +P + L++ L
Sbjct: 117 KVNGIGKETADVMLLYAFDKPIFVVDAYARRIFYRIGY----DMPTAYDGFRLDVEKQLP 172
Query: 563 S-IQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
S +Q+Y E H ++ KV C KS P C CP+ C
Sbjct: 173 SHLQQY-------------NEYHALLVEHAKVHC-KSSPICKGCPLHSIC 208
>gi|150020336|ref|YP_001305690.1| endonuclease III [Thermosipho melanesiensis BI429]
gi|149792857|gb|ABR30305.1| endonuclease III [Thermosipho melanesiensis BI429]
Length = 203
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 19/119 (15%)
Query: 494 PDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 553
PD +E LL+ G+G K+ V ++ A VDT+V RI+ RLGW + P +
Sbjct: 99 PDTLEE-LLTLPGVGRKTANIVLYVSFSKPALAVDTHVHRISNRLGWCKTKN-PNETEFA 156
Query: 554 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
L++L P K LW ++ M+ FGK C P C+ CP+ C+
Sbjct: 157 LMKLLP------KDLWG-----------PINGSMVKFGKNVCLPRNPKCDICPIYDYCK 198
>gi|421767561|ref|ZP_16204310.1| Endonuclease III [Lactococcus garvieae DCC43]
gi|407623979|gb|EKF50770.1| Endonuclease III [Lactococcus garvieae DCC43]
Length = 214
Score = 54.3 bits (129), Expect = 3e-04, Method: Composition-based stats.
Identities = 51/213 (23%), Positives = 81/213 (38%), Gaps = 35/213 (16%)
Query: 409 EKQNDFDWDS---------LRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKE 459
E + +W++ L Q G K P D E++ AD+ + I+
Sbjct: 20 EAHGELEWETPFQLLIATILSAQATDKGVNKATPALFAKYPDPESLAQADIADVEQCIRT 79
Query: 460 RGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLT 519
G+ A I LVRD ++P DK + L + G+G K+ V T
Sbjct: 80 IGLYKTKAKNIVKTAQMLVRDFNG-------ELPRDK--KLLQTLPGVGRKTANVVLGET 130
Query: 520 LHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRT 579
VDT+V R++ RL VP + ++ L+ L P +
Sbjct: 131 YGIPGIAVDTHVERVSKRLDIVPQKASVLEVEEKLMRLIP-----------------EDR 173
Query: 580 LYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
+ H+ +I FG+ CT P C CP+ C+
Sbjct: 174 WVKTHHHLIFFGRYHCTARAPKCEECPVLEYCK 206
>gi|16126511|ref|NP_421075.1| endonuclease III family protein [Caulobacter crescentus CB15]
gi|221235291|ref|YP_002517728.1| endonuclease III [Caulobacter crescentus NA1000]
gi|13423785|gb|AAK24243.1| endonuclease III family protein [Caulobacter crescentus CB15]
gi|220964464|gb|ACL95820.1| endonuclease III [Caulobacter crescentus NA1000]
Length = 241
Score = 54.3 bits (129), Expect = 3e-04, Method: Composition-based stats.
Identities = 48/185 (25%), Positives = 77/185 (41%), Gaps = 16/185 (8%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYL 501
WE + A ++A I++ A R+ L + G + L L+ + D+A+ L
Sbjct: 66 WEDLAEAKTARVAMAIQDVTFPEDKARRLITALRMIEEKVGWLSLSHLKTLEVDQARWEL 125
Query: 502 LSFRGLGLKSVECV-RLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
+ G+G+K CV L A VDT+V R+A R+G V + Y
Sbjct: 126 QALPGVGVKVAACVLNFSDLAMRALVVDTHVDRVARRIGLVGSGDTTNT--------YHT 177
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMIT-FGKVFCTKSKPNCNACPMRGECRHFASAFA 619
L ++ W L+ELH+ M G++ C P C ACP++ C +
Sbjct: 178 LMAMAPASW------TADDLFELHWLMKRGLGQMLCGAEAPKCGACPVKQMCAKAGVGHS 231
Query: 620 SSRLA 624
+ LA
Sbjct: 232 AEVLA 236
>gi|15678789|ref|NP_275906.1| endonuclease III [Methanothermobacter thermautotrophicus str. Delta
H]
gi|2621854|gb|AAB85267.1| endonuclease III [Methanothermobacter thermautotrophicus str. Delta
H]
Length = 233
Score = 54.3 bits (129), Expect = 3e-04, Method: Composition-based stats.
Identities = 47/172 (27%), Positives = 78/172 (45%), Gaps = 27/172 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
E V A + +I I++ G ++ A R+++ ++R++ LE PD E LL
Sbjct: 78 EDVAYAPLEEIEALIRKAGFYHVKARRVRE-VSRII-------LEEYDGKVPDDINE-LL 128
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
G+G K+ CV + A PVDT+V RI+ R+G V + PE + L+++ P
Sbjct: 129 KLPGVGRKTANCVLVYAFGRPAIPVDTHVHRISNRIGLVDTRT-PEETERALMKVIP--- 184
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
+ W EL+ M+ FG+ C P CP+ C ++
Sbjct: 185 ---REYW-----------IELNDLMVQFGQDICRPLGPRHEECPIADHCDYY 222
>gi|390443653|ref|ZP_10231441.1| endonuclease III [Nitritalea halalkaliphila LW7]
gi|389666256|gb|EIM77710.1| endonuclease III [Nitritalea halalkaliphila LW7]
Length = 233
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 62/148 (41%), Gaps = 19/148 (12%)
Query: 482 GSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWV 541
G + +E + P E L+ G+G K+ + + H VDT+V R++ RLG
Sbjct: 94 GKMLVEEFQSEVPQTVNE-LIKLPGVGRKTANVITSVIWHQPNMAVDTHVFRVSRRLGLA 152
Query: 542 PLQP-LPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKP 600
PL P ++ HL+ P + +++ H+ +I G+ C P
Sbjct: 153 PLTAKTPLEVEKHLIRHIP-----------------KEHVHQAHHWLILHGRYTCLARSP 195
Query: 601 NCNACPMRGECRHFASAFASSRLALPGP 628
C+AC + C+HF + R P P
Sbjct: 196 KCSACSITHLCKHFERGLRAKRKKDPLP 223
>gi|392375899|ref|YP_003207732.1| hypothetical protein DAMO_2860 [Candidatus Methylomirabilis
oxyfera]
gi|258593592|emb|CBE69933.1| A/G-specific adenine glycosylase (fragment) [Candidatus
Methylomirabilis oxyfera]
Length = 238
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 13/116 (11%)
Query: 499 EYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY 558
E L +F+G+G + V A +DTNV R+ R+ P++ HL +L
Sbjct: 119 EELQAFKGIGRYTAGAVMSFAFRKDAPILDTNVKRLLQRVFLGPIKSNGSKSVKHLWDLS 178
Query: 559 PVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
VL + Y+ + M+ FG + CT KPNC CPMR CR +
Sbjct: 179 TVL-------------IPNGKAYDFNQAMMDFGALICTARKPNCPICPMRPLCRSY 221
>gi|403383159|ref|ZP_10925216.1| endonuclease III [Kurthia sp. JC30]
Length = 219
Score = 54.3 bits (129), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 26/163 (15%)
Query: 450 VNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGL 509
+ ++ N I+ G+ A I+ RL+ +G ++P ++ E L++ G+G
Sbjct: 70 LEELENDIRSIGLFRSKAKNIQKLCARLLEVYGG-------EIPAER--EELVTLPGVGR 120
Query: 510 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 569
K+ V + + A VDT+V RI RLG + ++ ++ P+ W
Sbjct: 121 KTANVVLSVAFNVPAMAVDTHVERITKRLGLCRWKDSVLEVEQTIMRKTPIER------W 174
Query: 570 PRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
+ H+QMI FG+ C +P C+ CP+ +CR
Sbjct: 175 NKA-----------HHQMIFFGRYHCKAQRPQCDTCPLFDDCR 206
>gi|407465823|ref|YP_006776705.1| DNA-(apurinic or apyrimidinic site) lyase [Candidatus
Nitrosopumilus sp. AR2]
gi|407049011|gb|AFS83763.1| DNA-(apurinic or apyrimidinic site) lyase [Candidatus
Nitrosopumilus sp. AR2]
Length = 216
Score = 54.3 bits (129), Expect = 4e-04, Method: Composition-based stats.
Identities = 38/145 (26%), Positives = 65/145 (44%), Gaps = 20/145 (13%)
Query: 476 RLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIA 535
R++ +D ++ VP + E L+ G+G K+ CV + A PVD +V RI+
Sbjct: 92 RIIEVAKIIDKKYKGKVPDNL--ETLVELPGVGRKTANCVLVYAFEKPAIPVDIHVHRIS 149
Query: 536 VRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFC 595
RLG V + E+ Q +++ IQK W +++ + +G+ C
Sbjct: 150 NRLGLVDTKNPEETEQ-------ELMKKIQKKYW-----------IDINDTFVMYGQNIC 191
Query: 596 TKSKPNCNACPMRGECRHFASAFAS 620
P CN C ++ C+ + S AS
Sbjct: 192 KPISPMCNVCKIKKSCKFYKSKNAS 216
>gi|440227974|ref|YP_007335065.1| endonuclease III [Rhizobium tropici CIAT 899]
gi|440039485|gb|AGB72519.1| endonuclease III [Rhizobium tropici CIAT 899]
Length = 259
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 27/161 (16%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
+I IK G+ A + +L+ D G +VP + +E L++ G+G K+
Sbjct: 100 RIREYIKTIGLYRNKAKNVVALSEKLITDFGG-------EVP--RTREELITLPGVGRKT 150
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
V + VDT++ RIA RL P + P+ ++ L+++ P
Sbjct: 151 ANVVLSMAFGQATMAVDTHIFRIANRLLLAPGK-TPDEVEHRLMKIIP------------ 197
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
DQ LY H+ +I G+ C KP C C + CR
Sbjct: 198 ----DQ-YLYHAHHWLILHGRYVCKARKPECERCVIADLCR 233
>gi|413944179|gb|AFW76828.1| hypothetical protein ZEAMMB73_573219 [Zea mays]
Length = 264
Score = 53.9 bits (128), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 49/89 (55%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYL 501
W+ V + ++ + I+ G+ A RI+ L + G + LE+LR++ D+ K+ L
Sbjct: 171 WDQVVDEEGKRLEDAIRCGGLAATKAARIRSMLRDVRERRGKICLEYLRELSVDEVKKEL 230
Query: 502 LSFRGLGLKSVECVRLLTLHHLAFPVDTN 530
F+G+G K+V CV + L FPVDT+
Sbjct: 231 SRFKGIGPKTVACVLMFYLQKDDFPVDTH 259
>gi|393201411|ref|YP_006463253.1| EndoIII-related endonuclease [Solibacillus silvestris StLB046]
gi|406665654|ref|ZP_11073426.1| Endonuclease III [Bacillus isronensis B3W22]
gi|327440742|dbj|BAK17107.1| predicted EndoIII-related endonuclease [Solibacillus silvestris
StLB046]
gi|405386519|gb|EKB45946.1| Endonuclease III [Bacillus isronensis B3W22]
Length = 219
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 26/163 (15%)
Query: 450 VNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGL 509
+ ++ N I+ G+ A I+ RL+ ++G +VP ++E L++ G+G
Sbjct: 70 LEELQNDIRSIGLYRNKAKNIQLLCARLINEYGG-------EVPA--SREELVTLPGVGR 120
Query: 510 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 569
K+ V + A VDT+V R++ RLG + ++ +++ P+ W
Sbjct: 121 KTANVVLSVAFDIPAMAVDTHVERVSKRLGLCRWKDSVLEVEETIMKKTPIER------W 174
Query: 570 PRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
R H+Q+I FG+ C P C CP+ +CR
Sbjct: 175 SRA-----------HHQIIFFGRYHCKAQNPGCGTCPLLDDCR 206
>gi|170741581|ref|YP_001770236.1| helix-hairpin-helix DNA-binding motif-containing protein
[Methylobacterium sp. 4-46]
gi|168195855|gb|ACA17802.1| helix-hairpin-helix motif [Methylobacterium sp. 4-46]
Length = 239
Score = 53.9 bits (128), Expect = 4e-04, Method: Composition-based stats.
Identities = 47/176 (26%), Positives = 73/176 (41%), Gaps = 22/176 (12%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
DW + A V ++ I A R++ L + HGS+ L++LRD+ A+ +
Sbjct: 63 DWAELIAAPVAEVEAVITGVTWPEQKAPRLQAVLRAVRERHGSLSLDFLRDLDVASARAW 122
Query: 501 LLSFRGLGLK-SVECVRLLTLHHLAFPVDTNVGRIAVRLGW----VPLQPLPESLQLHLL 555
L + G+G K S + TL A PVD++ R+A RLG V + P L+ L
Sbjct: 123 LEAIPGIGPKTSAAVLSFSTLRRPALPVDSHHHRVAQRLGLIGPKVDVGPAHAILRAQLP 182
Query: 556 ELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
E + + LY+ H M+ G+ C P C C + C
Sbjct: 183 EAWSA-----------------QDLYDNHEVMMLHGQRCCFHRAPACGTCVLLDLC 221
>gi|335357361|ref|ZP_08549231.1| endonuclease III [Lactobacillus animalis KCTC 3501]
Length = 212
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 18/126 (14%)
Query: 486 LEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQP 545
+E V P KE L+S G+G K+ + V AF VDT+V R+A RLG VP
Sbjct: 98 VERFNGVVPKTRKE-LMSLSGVGRKTADVVLAECFGIPAFAVDTHVSRVAKRLGMVPADS 156
Query: 546 LPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNAC 605
+++ L++ P + LW + H++MI +G+ C P C++C
Sbjct: 157 DVLTIEKILMQKVP------QDLW-----------IKGHHRMIFWGRYQCMARNPKCSSC 199
Query: 606 PMRGEC 611
P+ C
Sbjct: 200 PLLDIC 205
>gi|399216845|emb|CCF73532.1| unnamed protein product [Babesia microti strain RI]
Length = 392
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 71/173 (41%), Gaps = 28/173 (16%)
Query: 440 LDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKE 499
L E + A V +I I + G +N A +K ++RD + PD +
Sbjct: 239 LTIEKILTASVEEIDKHIGKVGFHNTKAKNLKKIC-EILRDKFDKKI-------PDNFND 290
Query: 500 YLLSFRGLGLKSVECVRLLTLHHL-AFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY 558
L S G+G K + L + VD +V RIA RLGWV PE + L ++
Sbjct: 291 -LTSLPGIGPKMAHLILQLGFGKVEGIAVDVHVNRIANRLGWVKSNS-PEGTREQLEKII 348
Query: 559 PVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
P K W +L L ++ FG++ CTK+ P C+ C C
Sbjct: 349 P------KKFWAQLNVL-----------LVGFGQMICTKAGPGCSTCLANSYC 384
>gi|301105551|ref|XP_002901859.1| endonuclease III, HhH-GPD superfamily base excision DNA repair,
putative [Phytophthora infestans T30-4]
gi|262099197|gb|EEY57249.1| endonuclease III, HhH-GPD superfamily base excision DNA repair,
putative [Phytophthora infestans T30-4]
Length = 287
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 89/212 (41%), Gaps = 45/212 (21%)
Query: 436 TKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRL-VRDHGSVDLEWLRDVPP 494
+++ L E V+ K++ +K G + A ++K L R HG D+P
Sbjct: 107 SEEGLTIEVVQSVSEEKLSEALKPVGFYHRKAHQLKRVAAILRTRFHG--------DIP- 157
Query: 495 DKAKEYLLSFRGLGLKSVECVRLLTLHHL-AFPVDTNVGRIAVRLGWVPLQPLPESLQLH 553
++ + LL G+G K + LL + VDT+V R+A RLGW PE +
Sbjct: 158 -RSLDELLQLPGIGPKIGRVITLLAWGQVDGIVVDTHVHRLAQRLGWSSTTT-PEDTRKE 215
Query: 554 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
L + P K W +L + ++ FG+ CT P+C+ CP+ +C
Sbjct: 216 LEDWIP------KEHWGKLSLV-----------VVGFGQTVCTAKHPSCSKCPLATKC-- 256
Query: 614 FASAFASSRLALPGPEEKAIVSANENRTNTQN 645
SAF K + S ++ RT+ N
Sbjct: 257 -PSAF------------KVVASNSKKRTSQTN 275
>gi|153815003|ref|ZP_01967671.1| hypothetical protein RUMTOR_01218 [Ruminococcus torques ATCC 27756]
gi|317501555|ref|ZP_07959751.1| endonuclease III [Lachnospiraceae bacterium 8_1_57FAA]
gi|331088583|ref|ZP_08337494.1| endonuclease III [Lachnospiraceae bacterium 3_1_46FAA]
gi|336440472|ref|ZP_08620059.1| endonuclease III [Lachnospiraceae bacterium 1_1_57FAA]
gi|145847571|gb|EDK24489.1| endonuclease III [Ruminococcus torques ATCC 27756]
gi|316897066|gb|EFV19141.1| endonuclease III [Lachnospiraceae bacterium 8_1_57FAA]
gi|330407540|gb|EGG87040.1| endonuclease III [Lachnospiraceae bacterium 3_1_46FAA]
gi|336012917|gb|EGN42808.1| endonuclease III [Lachnospiraceae bacterium 1_1_57FAA]
Length = 207
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 18/113 (15%)
Query: 499 EYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY 558
E L S G+G K+ +R H + VDT+V RI+ RLG+ Q PE ++ L++
Sbjct: 109 EDLTSLAGVGRKTANVIRGNIYHDASVVVDTHVKRISNRLGFTK-QSDPEKIEQDLMKEL 167
Query: 559 PVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
P D LY + Q+ITFG+ CT P C C ++ C
Sbjct: 168 PK---------------DHWILYNI--QIITFGRSICTARNPKCGECFLKKYC 203
>gi|347521618|ref|YP_004779189.1| endonuclease III [Lactococcus garvieae ATCC 49156]
gi|385832997|ref|YP_005870772.1| endonuclease III [Lactococcus garvieae Lg2]
gi|343180186|dbj|BAK58525.1| endonuclease III [Lactococcus garvieae ATCC 49156]
gi|343182150|dbj|BAK60488.1| endonuclease III [Lactococcus garvieae Lg2]
Length = 214
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 82/213 (38%), Gaps = 35/213 (16%)
Query: 409 EKQNDFDWDS---------LRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKE 459
E + +W++ L Q G K P D E++ AD+ + I+
Sbjct: 20 EAHGELEWETPFQLLIATILSAQATDKGVNKATPGLFAKYPDPESLAQADIADVEQCIRT 79
Query: 460 RGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLT 519
G+ A I LV + S ++P DK + L + G+G K+ V T
Sbjct: 80 IGLYKTKAKNIVKTSQMLVENFNS-------ELPRDK--KLLQTLSGVGRKTANVVLGET 130
Query: 520 LHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRT 579
VDT+V RI+ RL VP + ++ L++L P +
Sbjct: 131 YGIPGIAVDTHVERISKRLDIVPQKASVLEVEEKLMKLIP-----------------EER 173
Query: 580 LYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
E H+ +I FG+ CT P C CP+ C+
Sbjct: 174 WVESHHHLIFFGRYHCTARAPKCEECPVLEYCK 206
>gi|126698144|ref|YP_001087041.1| endonuclease III [Clostridium difficile 630]
gi|260682265|ref|YP_003213550.1| endonuclease iii [Clostridium difficile CD196]
gi|260685864|ref|YP_003216997.1| endonuclease iii [Clostridium difficile R20291]
gi|115249581|emb|CAJ67398.1| Endonuclease III [Clostridium difficile 630]
gi|260208428|emb|CBA60983.1| endonuclease iii [Clostridium difficile CD196]
gi|260211880|emb|CBE02318.1| endonuclease iii [Clostridium difficile R20291]
Length = 201
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 27/165 (16%)
Query: 450 VNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGL 509
+ +I+ IK G+ + +IKD +L L D + E L+ G+G
Sbjct: 57 IEEISKEIKSCGLYKSKSQKIKDTSEQLCE---------LYDGEVPDSLEKLIKLPGVGR 107
Query: 510 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 569
K+ V +H A VDT+V R++ R+G V +P P+ + L+E P K W
Sbjct: 108 KTAGVVLSNAFNHPAIAVDTHVFRVSNRIGIVD-EPNPQKTEFALMEAIP------KERW 160
Query: 570 PRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
H+ +I G+ C P C +CP++ +C ++
Sbjct: 161 SHS-----------HHVLIFHGRRMCKARNPECASCPIKEDCNYY 194
>gi|397780479|ref|YP_006544952.1| endonuclease III related protein [Methanoculleus bourgensis MS2]
gi|396938981|emb|CCJ36236.1| endonuclease III related protein [Methanoculleus bourgensis MS2]
Length = 233
Score = 53.9 bits (128), Expect = 4e-04, Method: Composition-based stats.
Identities = 49/180 (27%), Positives = 71/180 (39%), Gaps = 17/180 (9%)
Query: 440 LDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKE 499
LD + + AD IA I N A RI++F V + D + V +E
Sbjct: 63 LDPDLLAAADTGDIARLIIPSRFYNQKAERIQEFAGIYVAEF-QADPAVMAAVETGALRE 121
Query: 500 YLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
LL+ RG G ++V+ + L F VD RI R G +P + + Q + P
Sbjct: 122 RLLAVRGFGKETVDTILLYACRKPVFVVDAYTRRIFSRYGLLPEKVSYDRTQRLFSDHLP 181
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFA 619
D + + H Q++ GK C KS P C+ CP+R C A A
Sbjct: 182 P---------------DVKLFNDYHAQIVRLGKTACRKS-PLCDRCPIRRVCGSLRCAAA 225
>gi|390449495|ref|ZP_10235100.1| endonuclease III [Nitratireductor aquibiodomus RA22]
gi|389663992|gb|EIM75503.1| endonuclease III [Nitratireductor aquibiodomus RA22]
Length = 246
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 27/162 (16%)
Query: 451 NKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLK 510
K+ I+ G+ A + L+RDHGS VP ++E L++ G+G K
Sbjct: 93 QKVGEYIRTIGLWRNKAKNVIALSEALIRDHGS-------QVP--DSREALVTLPGVGRK 143
Query: 511 SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP 570
+ V ++ VDT++ RI R+G P + PE ++ L+++ P
Sbjct: 144 TANVVLNMSFGQPTMAVDTHILRIGNRIGLAPGK-TPEQVEDTLVKIIPA---------- 192
Query: 571 RLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
+ H+ +I G+ C KP+C AC + C+
Sbjct: 193 -------EFMRHAHHWLILHGRYVCKARKPDCPACVIADICK 227
>gi|225848833|ref|YP_002728997.1| endonuclease III [Sulfurihydrogenibium azorense Az-Fu1]
gi|225644602|gb|ACN99652.1| endonuclease III [Sulfurihydrogenibium azorense Az-Fu1]
Length = 208
Score = 53.9 bits (128), Expect = 4e-04, Method: Composition-based stats.
Identities = 45/175 (25%), Positives = 72/175 (41%), Gaps = 29/175 (16%)
Query: 437 KDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDK 496
++ L +E + D+ K+ N IK G N + +KD + D
Sbjct: 57 ENCLSFECIDKIDIEKLKNLIKPSGFYNQKSRTLKDLAKLFLSKK-------------DI 103
Query: 497 AKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLE 556
+E LLS +G+G ++ E + L L F VD R+ RLG+ E++
Sbjct: 104 GREDLLSIKGIGQETAESILLYALDKPYFVVDNYTKRLFYRLGFT-----AENIS----- 153
Query: 557 LYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
+QK++ RL +D E H ++ K FC K KP C C + +C
Sbjct: 154 ----YSDLQKFITGRL-PVDLEIYKEFHALIVKHCKEFCQK-KPKCENCFLSHKC 202
>gi|378828254|ref|YP_005190986.1| endonuclease III [Sinorhizobium fredii HH103]
gi|365181306|emb|CCE98161.1| putative endonuclease III protein [Sinorhizobium fredii HH103]
Length = 275
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 27/161 (16%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
K+ + IK G+ A + RL+ D G VP K +E L++ G+G K+
Sbjct: 118 KLRDAIKTIGLYRNKAKNVIALSERLIADFGGA-------VP--KTREELMTLPGVGRKT 168
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
V + VDT++ RIA R+ P + P+ ++ +L+ + P QKYL
Sbjct: 169 ANVVLQMAFGQSTIAVDTHLFRIANRIRLAPGK-TPDEVEANLMRVIP-----QKYL--- 219
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
Y H+ +I G+ C +P C C + C+
Sbjct: 220 ---------YHAHHWLILHGRYVCKARRPECERCIIADICK 251
>gi|302410315|ref|XP_003002991.1| base excision DNA repair protein [Verticillium albo-atrum VaMs.102]
gi|261358015|gb|EEY20443.1| base excision DNA repair protein [Verticillium albo-atrum VaMs.102]
Length = 327
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 63/154 (40%), Gaps = 25/154 (16%)
Query: 457 IKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVR 516
IK G+ + + I L + +G+ L+ + D ++A L+ F+G+G K+ CV
Sbjct: 163 IKCGGLAAVKSKVILGILEQAKARYGAYSLDHMFDKTDEEAMRELIGFQGVGPKTASCVL 222
Query: 517 LLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLD 576
L L +F VDT+V RI LGW P + HL P +
Sbjct: 223 LFCLRRESFAVDTHVWRITGLLGWRPKTASRDETYAHLDVRIPDEDK------------- 269
Query: 577 QRTLYELHYQMITFGKVFCTKSKPNCNACPMRGE 610
Y LH ++ GKV C+ C G+
Sbjct: 270 ----YGLHILLVKHGKV--------CDECKAGGK 291
>gi|228469748|ref|ZP_04054714.1| endonuclease III [Porphyromonas uenonis 60-3]
gi|228308683|gb|EEK17416.1| endonuclease III [Porphyromonas uenonis 60-3]
Length = 214
Score = 53.9 bits (128), Expect = 4e-04, Method: Composition-based stats.
Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 25/175 (14%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
EA+ A V+ + + N A + R+ ++H V VP +E L
Sbjct: 63 EAMARASVDDLLAFMGSVSYPNNKAKHLIGLSERIAQEHHGV-------VP--STREELE 113
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
+ G+G KS + + A PVDT+V R+A R+G L S L + L
Sbjct: 114 ALPGVGRKSASVMLAVCFDTPAMPVDTHVFRVAKRIG------LASSRATTPLAVEQALR 167
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASA 617
++ + L H+Q+I G+ C KP C+ C + CRH+A+A
Sbjct: 168 R----------RIPREQLIRAHHQLILLGRYICKARKPLCDECTLTACCRHYATA 212
>gi|347758515|ref|YP_004866077.1| endonuclease III [Micavibrio aeruginosavorus ARL-13]
gi|347591033|gb|AEP10075.1| endonuclease III [Micavibrio aeruginosavorus ARL-13]
Length = 211
Score = 53.9 bits (128), Expect = 4e-04, Method: Composition-based stats.
Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 27/159 (16%)
Query: 453 IANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSV 512
+ + IK G+ N A + LVRD+G VP D+ + L+ G+G K+
Sbjct: 72 LKDHIKTIGLYNTKAKNVMAAAEMLVRDYGG-------KVPEDR--DELVKLPGVGRKTA 122
Query: 513 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRL 572
V + H VDT++ R++ R G P PE+++ L ++ P P
Sbjct: 123 NVVLNIAFGHETIAVDTHLFRVSNRTGLAP-GATPEAVEAKLEKVIP----------PEF 171
Query: 573 CKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
+ H+ +I G+ C KP+C CP+R C
Sbjct: 172 RR-------HAHHWLILHGRYICKARKPSCPVCPVRDVC 203
>gi|335996612|ref|ZP_08562529.1| DNA lyase [Lactobacillus ruminis SPM0211]
gi|335351682|gb|EGM53173.1| DNA lyase [Lactobacillus ruminis SPM0211]
Length = 213
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 71/171 (41%), Gaps = 34/171 (19%)
Query: 448 ADVNKIANTIKERGMNN----MLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLS 503
AD +++ IK G+ + L G +D + R D K +E L+
Sbjct: 68 ADPSEVEKYIKTIGLYHNKAKYLVGCARDLVERF-------------DGKVPKTREELME 114
Query: 504 FRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLES 563
G+G K+ AF VDT+V R+A RL V +P L++ ++E
Sbjct: 115 LTGVGRKTANVELAECFGIPAFAVDTHVSRVANRLALV--EPTKNVLEIE----RQLMEQ 168
Query: 564 IQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
+ + W E H+ +I +G+ C KP C CP+ EC++F
Sbjct: 169 VDENRW-----------IEAHHLLIAWGRHQCLARKPKCETCPLSFECKYF 208
>gi|225569891|ref|ZP_03778916.1| hypothetical protein CLOHYLEM_05985 [Clostridium hylemonae DSM
15053]
gi|225161361|gb|EEG73980.1| hypothetical protein CLOHYLEM_05985 [Clostridium hylemonae DSM
15053]
Length = 208
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 74/172 (43%), Gaps = 27/172 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
EA AD+ ++ IK G + A I + + G +VP + E L+
Sbjct: 62 EAFAQADLKELEQDIKPTGFYHTKARNIIACMKEIRDRFGG-------EVP--RELEELV 112
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
S G+G K+ +R H + VDT+V RI+ RLG PE ++ L++ P
Sbjct: 113 SLAGVGRKTANVIRGNIYHEPSVVVDTHVKRISNRLGLTENND-PEKIEQDLMKELP--- 168
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
D LY + Q+ITFG+ CT KP C C ++ C+ +
Sbjct: 169 ------------RDHWILYNI--QIITFGRSVCTARKPKCRDCFLQKYCKEY 206
>gi|225574096|ref|ZP_03782707.1| hypothetical protein RUMHYD_02161 [Blautia hydrogenotrophica DSM
10507]
gi|225038696|gb|EEG48942.1| endonuclease III [Blautia hydrogenotrophica DSM 10507]
Length = 210
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 74/167 (44%), Gaps = 27/167 (16%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
AD+ ++ IK G + A I RLV ++G +VP D E L+S G+
Sbjct: 68 ADLRELEQDIKPTGFYHNKAKNIIGCAQRLVNEYGG-------EVPSDL--EALVSLPGV 118
Query: 508 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 567
G K+ +R H + VDT+V RI+ RLG + + P ++ L+++ P +
Sbjct: 119 GRKTANVIRGNIFHEPSVVVDTHVKRISRRLG-LTREEDPVKIEKDLMKVLP------RE 171
Query: 568 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
W LY + Q+ITFG+ C P C C + C +
Sbjct: 172 HW---------ILYNI--QIITFGRQICFARSPKCEECFLTKYCSEY 207
>gi|408420792|ref|YP_006762206.1| endonuclease III Nth [Desulfobacula toluolica Tol2]
gi|405108005|emb|CCK81502.1| Nth: endonuclease III [Desulfobacula toluolica Tol2]
Length = 210
Score = 53.9 bits (128), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 72/171 (42%), Gaps = 27/171 (15%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
D EA+ A ++ I I G N A IK ++ H + VP D +K
Sbjct: 62 DPEALSHASLDNIKKIIYSTGFYNNKAKNIKACAKAILERHEGM-------VPEDISK-- 112
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
L++ G+G K+ V H A VDT+V RI+ RLG + P ++ L+++ P
Sbjct: 113 LVNLPGVGRKTANVVLSAAFGHQAIVVDTHVLRISKRLGLTD-KTDPVKVEHELMQIIP- 170
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
K W +L Q+I FG+ C KP C CP+ C
Sbjct: 171 -----KVSWS-----------DLSLQLIYFGREICDAKKPLCQDCPLFKIC 205
>gi|259480217|tpe|CBF71146.1| TPA: hypothetical base excision DNA repair protein (Eurofung)
[Aspergillus nidulans FGSC A4]
Length = 502
Score = 53.9 bits (128), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 75/209 (35%), Gaps = 62/209 (29%)
Query: 437 KDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFL-----------NRLVR------ 479
K S++W+AVR A V + IK G+ + + IK L N LV+
Sbjct: 274 KGSVNWDAVRRAPVKDVFEAIKSGGLADSKSKNIKAILDMVYKENQERRNILVKGQDTNS 333
Query: 480 ------------------------DHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECV 515
D + L +L +P ++ L+ + G+G K+ CV
Sbjct: 334 DSGKFVQQLNDKPEGEKQYEIACADQNFLSLNYLHGLPTEEVMTELMKYPGIGPKTAACV 393
Query: 516 RLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKL 575
L L F VDT++ RI L WVP E LE+ ++
Sbjct: 394 LLFCLQRPCFAVDTHIFRICKWLNWVPPDRATEITAFSHLEV----------------RI 437
Query: 576 DQRTLYELHYQMITFGKVFCTKSKPNCNA 604
Y LH +I G KS P C A
Sbjct: 438 PDHLKYPLHQLLIRHG-----KSCPRCRA 461
>gi|428671556|gb|EKX72474.1| endonuclease III family member protein [Babesia equi]
Length = 666
Score = 53.9 bits (128), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 53/119 (44%), Gaps = 20/119 (16%)
Query: 494 PDKAKEYLLSFRGLGLKSVECVRLLTLHHL-AFPVDTNVGRIAVRLGWVPLQPLPESLQL 552
PD +E L+S G+G K V L + VD +V RI+ RLGWV + P+ +L
Sbjct: 556 PDTMEE-LVSLPGVGPKMANLVIQLAFKRIDGISVDLHVHRISNRLGWVKTK-TPDETRL 613
Query: 553 HLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
L EL P Q+ E+++ ++ FG+ CT + P C C C
Sbjct: 614 QLQELIP-----------------QKLWAEVNHLLVGFGQTICTAAGPGCATCGANKWC 655
>gi|357023960|ref|ZP_09086126.1| endonuclease III [Mesorhizobium amorphae CCNWGS0123]
gi|355544051|gb|EHH13161.1| endonuclease III [Mesorhizobium amorphae CCNWGS0123]
Length = 273
Score = 53.9 bits (128), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 66/161 (40%), Gaps = 27/161 (16%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
K+ + I+ G+ A + L+ DHG +VP D+ E L+ G+G K+
Sbjct: 115 KVGDYIRTIGLWRNKARNVIALSQALIADHGG-------EVPDDR--EQLVKLPGVGRKT 165
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
V + VDT++ RI RLG P + PE ++ LL + P
Sbjct: 166 ANVVLNMAFGQHTMAVDTHILRIGNRLGLAPGK-TPEQVEQGLLTVIP------------ 212
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
+ H+ +I G+ C KP+C AC + C+
Sbjct: 213 -----DEYMRHAHHWLILHGRYVCKARKPDCPACVIADICK 248
>gi|420145504|ref|ZP_14652968.1| Endonuclease III [Lactobacillus coryniformis subsp. coryniformis
CECT 5711]
gi|398402878|gb|EJN56169.1| Endonuclease III [Lactobacillus coryniformis subsp. coryniformis
CECT 5711]
Length = 216
Score = 53.9 bits (128), Expect = 5e-04, Method: Composition-based stats.
Identities = 48/182 (26%), Positives = 74/182 (40%), Gaps = 26/182 (14%)
Query: 430 KERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWL 489
K P+ +D D EA+ A + I G+ A +K L+ D V
Sbjct: 50 KVTPKLFRDFPDPEAMAAASETALQADIHSIGLYRNKAKHMKAASQALLDDFNGV----- 104
Query: 490 RDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPES 549
VP +A+ L+ G+G K+ + V AF VDT+V R+ RL VP +
Sbjct: 105 --VPSTRAE--LMQLPGVGRKTADVVLADAFGIPAFAVDTHVTRVTKRLRMVPQKATVLE 160
Query: 550 LQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRG 609
++ +++L P + LW H++MI FG+ C P C CP+
Sbjct: 161 IEQRMMKLLP------EDLW-----------VTAHHRMIYFGRYHCLARAPKCEQCPLLS 203
Query: 610 EC 611
C
Sbjct: 204 MC 205
>gi|70726461|ref|YP_253375.1| endonuclease-like protein [Staphylococcus haemolyticus JCSC1435]
gi|68447185|dbj|BAE04769.1| endonuclease-like protein [Staphylococcus haemolyticus JCSC1435]
Length = 219
Score = 53.9 bits (128), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 67/165 (40%), Gaps = 26/165 (15%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
D+ ++ N I+ G+ A I+ L LE P KE L S G+
Sbjct: 68 VDIEELQNDIRSIGLYRNKAKNIQKLCQSL--------LEQFNGQIPSTHKE-LESLAGV 118
Query: 508 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 567
G K+ V + + VDT+V R++ RLG + ++ L + P K
Sbjct: 119 GRKTANVVMSVAFDEPSLAVDTHVERVSKRLGINRWKDNVTQVEDRLCSIIP------KE 172
Query: 568 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
W R H+Q+I FG+ C KP C+ CP+ +CR
Sbjct: 173 RWSRS-----------HHQLIFFGRYHCLARKPKCDICPLLDDCR 206
>gi|323489718|ref|ZP_08094945.1| endonuclease III [Planococcus donghaensis MPA1U2]
gi|323396849|gb|EGA89668.1| endonuclease III [Planococcus donghaensis MPA1U2]
Length = 226
Score = 53.9 bits (128), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 86/197 (43%), Gaps = 36/197 (18%)
Query: 417 DSLRRQVEANGGKK-ERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLN 475
D L +V A+ +K +PE D+ AV + ++ I+ G+ A I+
Sbjct: 45 DKLVNRVTADLFQKYHKPE------DYVAV---SLEELQQDIRSIGLFRNKAKNIQALSQ 95
Query: 476 RLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIA 535
L+ +H SV VP D+ + L++ G+G K+ V + A VDT+V R+A
Sbjct: 96 ILIDEHNSV-------VPADR--DLLMTLPGVGRKTANVVVSVAFGIPALAVDTHVERVA 146
Query: 536 VRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFC 595
RLG + P ++ +++ P + W + H+Q+I FG+ C
Sbjct: 147 KRLGLSRWKDNPLQVEETIMKKTPADD------WSKT-----------HHQIIFFGRYHC 189
Query: 596 TKSKPNCNACPMRGECR 612
P C+ CP+ CR
Sbjct: 190 KSQNPGCHICPLFDRCR 206
>gi|383785899|ref|YP_005470468.1| DNA-(apurinic or apyrimidinic site) lyase [Fervidobacterium
pennivorans DSM 9078]
gi|383108746|gb|AFG34349.1| endonuclease III [Fervidobacterium pennivorans DSM 9078]
Length = 220
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 56/121 (46%), Gaps = 19/121 (15%)
Query: 494 PDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 553
PD +E LLS G+G K+ V ++ A VDT+V RI+ RLGWV + PE +
Sbjct: 115 PDNLEE-LLSLPGVGRKTANIVLHVSFGQQALAVDTHVHRISNRLGWVNTKT-PEQTE-- 170
Query: 554 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
E ++K L P L ++ M+ FGK C P C C + C++
Sbjct: 171 --------EELKKILDPNL-------WGPVNGSMVEFGKQICRPISPKCEECFLTACCKY 215
Query: 614 F 614
F
Sbjct: 216 F 216
>gi|325663087|ref|ZP_08151537.1| hypothetical protein HMPREF0490_02277 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325470541|gb|EGC73771.1| hypothetical protein HMPREF0490_02277 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 275
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 482 GSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHL-AFPVDTNV 531
G VDL+ +R +P KAK+ LL G+G K +C+ L LHHL AFP+DT++
Sbjct: 183 GEVDLDAIRHLPYAKAKKELLKLFGVGEKVADCICLFALHHLQAFPIDTHI 233
>gi|432328581|ref|YP_007246725.1| putative endoIII-related endonuclease [Aciduliprofundum sp.
MAR08-339]
gi|432135290|gb|AGB04559.1| putative endoIII-related endonuclease [Aciduliprofundum sp.
MAR08-339]
Length = 209
Score = 53.5 bits (127), Expect = 5e-04, Method: Composition-based stats.
Identities = 50/174 (28%), Positives = 80/174 (45%), Gaps = 27/174 (15%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
D +++ A V++IA I G A +IK+ + R++ D E+ VP + +
Sbjct: 57 DPSSLKNAPVDEIARLIYPAGFYKQKARKIKE-IARII------DEEYDGVVP--RTLDE 107
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
LL G+G K+ V VD +V RI+ RLGWV + PE + L+++ P
Sbjct: 108 LLKLPGVGRKTANIVLSRCFDQDVIAVDVHVHRISNRLGWVSTRT-PEETERELMKILP- 165
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
+KY W R + EL ++ FG+ C P C+ CP+ C +F
Sbjct: 166 ----KKY-W--------REINEL---LVMFGRTICRPVGPKCDECPVSDFCDYF 203
>gi|284161459|ref|YP_003400082.1| DNA-(apurinic or apyrimidinic site) lyase [Archaeoglobus profundus
DSM 5631]
gi|284011456|gb|ADB57409.1| DNA-(apurinic or apyrimidinic site) lyase [Archaeoglobus profundus
DSM 5631]
Length = 211
Score = 53.5 bits (127), Expect = 5e-04, Method: Composition-based stats.
Identities = 52/164 (31%), Positives = 68/164 (41%), Gaps = 28/164 (17%)
Query: 451 NKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLK 510
+ I IK G + A +K LV ++G PD +E LL G+G K
Sbjct: 70 DDIDELIKPVGFHRTKAKNLKKLAEVLVNNYGGK--------VPDNLEE-LLKLPGVGRK 120
Query: 511 SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP 570
V L L A VDT+V RIA RLG V + PE + L ++ P K LW
Sbjct: 121 VANIV-LAHLGKPAIAVDTHVHRIANRLGVVRTKR-PEETEKELKKIVP------KDLWS 172
Query: 571 RLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
RL K + FG+ C KP C CP + C +F
Sbjct: 173 RLNK-----------AFVGFGQTVCKPLKPLCEECPFKSFCEYF 205
>gi|367042070|ref|XP_003651415.1| hypothetical protein THITE_2111678 [Thielavia terrestris NRRL 8126]
gi|346998677|gb|AEO65079.1| hypothetical protein THITE_2111678 [Thielavia terrestris NRRL 8126]
Length = 588
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 62/148 (41%), Gaps = 27/148 (18%)
Query: 439 SLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFL--------------------NRLV 478
S++WE VR + ++ IK G A IK L N +
Sbjct: 365 SINWEKVRLSSHQELVEVIKIAGNGPKKARHIKQILDMVYEENLQRAQGQPSLTKANPIQ 424
Query: 479 RDHGS-------VDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNV 531
R G+ + L+ + + D+A +S+ G+G+K+ CV L L F VDT+V
Sbjct: 425 RGDGTCVATQNLLSLDHMHSMSKDEAMAKFVSYPGIGIKTAACVTLFCLRMPCFAVDTHV 484
Query: 532 GRIAVRLGWVPLQPLPESLQLHLLELYP 559
+ LGWVP + P++ H + P
Sbjct: 485 HKFCRWLGWVPAKADPDNCFRHGEVMVP 512
>gi|224476573|ref|YP_002634179.1| putative endonuclease III [Staphylococcus carnosus subsp. carnosus
TM300]
gi|222421180|emb|CAL27994.1| putative endonuclease III [Staphylococcus carnosus subsp. carnosus
TM300]
Length = 223
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 54/121 (44%), Gaps = 19/121 (15%)
Query: 492 VPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQ 551
VP D+A L S G+G K+ V + A VDT+V R++ RLG + + ++
Sbjct: 105 VPHDRAD--LESLAGVGRKTANVVMSVAFGEPALAVDTHVERVSKRLGICRWKDSVKEVE 162
Query: 552 LHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
L + P K W + H+Q+I FG+ C P C+ CP+ EC
Sbjct: 163 SRLCSIIP------KDRWTKS-----------HHQLIFFGRYHCLARAPKCDICPLFDEC 205
Query: 612 R 612
R
Sbjct: 206 R 206
>gi|425736476|ref|ZP_18854780.1| DNA-(apurinic or apyrimidinic site) lyase [Brevibacterium casei
S18]
gi|425478146|gb|EKU45347.1| DNA-(apurinic or apyrimidinic site) lyase [Brevibacterium casei
S18]
Length = 245
Score = 53.5 bits (127), Expect = 5e-04, Method: Composition-based stats.
Identities = 45/175 (25%), Positives = 69/175 (39%), Gaps = 27/175 (15%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
D A+ A++ ++ I+ G A I N LV D+ +VP + E
Sbjct: 77 DAHALAVANLGEVEELIRSTGFYRAKARNIVKLANDLVDDYDG-------EVP--RTMEE 127
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
L+ G+G K+ V VDT++GR+A R GW + P + + L+P
Sbjct: 128 LVKLAGVGRKTANVVLGNAFDTPGITVDTHMGRLARRFGWTT-ETDPVKAEEDIAALFPT 186
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFA 615
E L L +++I G+ C KP C ACP+ C F
Sbjct: 187 KE-----------------LTLLSHRVIFHGRRICHSRKPACGACPLMALCPSFG 224
>gi|71027073|ref|XP_763180.1| endonuclease III [Theileria parva strain Muguga]
gi|68350133|gb|EAN30897.1| endonuclease III, putative [Theileria parva]
Length = 418
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 72/176 (40%), Gaps = 28/176 (15%)
Query: 437 KDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDK 496
K L + + D ++ + I + G + A IK L +G VP +K
Sbjct: 259 KRGLTLDNILKMDEEELDSIISKVGFHKTKAKNIKKAAQILKDQYGG-------KVPSNK 311
Query: 497 AKEYLLSFRGLGLKSVECVRLLTLHHL-AFPVDTNVGRIAVRLGWVPLQPLPESLQLHLL 555
L S G+G K + + + + VD +V RI RLGWV + PE L L
Sbjct: 312 KD--LESLPGIGPKMANLILQVAFNMVDGVAVDIHVHRITNRLGWVKTKT-PEETSLKLQ 368
Query: 556 ELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
EL P K LW ++ L ++ FG+ FCT + P C CP+ C
Sbjct: 369 ELLP------KDLWSKINPL-----------LVGFGQTFCTAAGPGCPTCPVNKWC 407
>gi|333901551|ref|YP_004475424.1| endonuclease III [Pseudomonas fulva 12-X]
gi|333116816|gb|AEF23330.1| endonuclease III [Pseudomonas fulva 12-X]
Length = 212
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 73/171 (42%), Gaps = 27/171 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
EA+ V+ ++ IK G+ N A + + L+ HGS VP ++ E L
Sbjct: 62 EAIYALGVDGLSEYIKTIGLYNSKAKNVIEACRILIEKHGS-------QVPDNR--EDLE 112
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
+ G+G K+ V LA VDT++ R++ R G P + + E ++ LL+ P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQLAMAVDTHIFRVSNRTGIAPGKNVVE-VEKKLLKFVP--- 168
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
+ L + H+ +I G+ C KP C +C + C +
Sbjct: 169 --------------RDYLLDAHHWLILHGRYVCQARKPRCGSCRIEDLCEY 205
>gi|414074236|ref|YP_006999453.1| Endonuclease III [Lactococcus lactis subsp. cremoris UC509.9]
gi|413974156|gb|AFW91620.1| Endonuclease III [Lactococcus lactis subsp. cremoris UC509.9]
Length = 218
Score = 53.5 bits (127), Expect = 6e-04, Method: Composition-based stats.
Identities = 50/194 (25%), Positives = 76/194 (39%), Gaps = 23/194 (11%)
Query: 419 LRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLV 478
L Q G K P D + + A V +I I+ G+ A I LV
Sbjct: 39 LSAQATDKGVNKATPGLFAAFPDAQTMSQAKVEEIEALIRTIGLYKTKAKNILRTSQMLV 98
Query: 479 RDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRL 538
D G + L D+P DK + L + G+G K+ V VDT+V R++ RL
Sbjct: 99 ADFGGI----LPDLPKDK--KLLQTLPGVGRKTANVVLAEAYGIPGIAVDTHVERVSKRL 152
Query: 539 GWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKS 598
V + ++ L++L P + +Q H+ +I FG+ C
Sbjct: 153 DIVAQKATVLEVEEKLMKLIPEDKWVQS-----------------HHHLIFFGRYHCKAK 195
Query: 599 KPNCNACPMRGECR 612
KP C CP+ C+
Sbjct: 196 KPKCAGCPVLDYCK 209
>gi|94268173|ref|ZP_01291108.1| Helix-hairpin-helix motif:HhH-GPD [delta proteobacterium MLMS-1]
gi|93451700|gb|EAT02475.1| Helix-hairpin-helix motif:HhH-GPD [delta proteobacterium MLMS-1]
Length = 217
Score = 53.5 bits (127), Expect = 6e-04, Method: Composition-based stats.
Identities = 41/157 (26%), Positives = 66/157 (42%), Gaps = 19/157 (12%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
++A I+ G N+ AGR+++ L R+ +H S L + LL +G+G ++
Sbjct: 75 ELAALIRPAGYYNIKAGRLQNLLGRIHAEHDS--LAAFLAQQSTTLRRQLLEIKGIGPET 132
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
+ + L F VDT RI R G +P + +Q + P
Sbjct: 133 ADSIMLYAAQRPVFVVDTYTHRIFSRHGLLPEEADYHQVQEIFHDALPA----------- 181
Query: 572 LCKLDQRTLY-ELHYQMITFGKVFCTKSKPNCNACPM 607
+ LY E H ++ GK +C KS P C CP+
Sbjct: 182 -----EAPLYNEYHALIVRLGKEYCRKSNPRCPTCPL 213
>gi|67540934|ref|XP_664241.1| hypothetical protein AN6637.2 [Aspergillus nidulans FGSC A4]
gi|40738976|gb|EAA58166.1| hypothetical protein AN6637.2 [Aspergillus nidulans FGSC A4]
Length = 1085
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 75/209 (35%), Gaps = 62/209 (29%)
Query: 437 KDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFL-----------NRLVR------ 479
K S++W+AVR A V + IK G+ + + IK L N LV+
Sbjct: 857 KGSVNWDAVRRAPVKDVFEAIKSGGLADSKSKNIKAILDMVYKENQERRNILVKGQDTNS 916
Query: 480 ------------------------DHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECV 515
D + L +L +P ++ L+ + G+G K+ CV
Sbjct: 917 DSGKFVQQLNDKPEGEKQYEIACADQNFLSLNYLHGLPTEEVMTELMKYPGIGPKTAACV 976
Query: 516 RLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKL 575
L L F VDT++ RI L WVP E LE+ ++
Sbjct: 977 LLFCLQRPCFAVDTHIFRICKWLNWVPPDRATEITAFSHLEV----------------RI 1020
Query: 576 DQRTLYELHYQMITFGKVFCTKSKPNCNA 604
Y LH +I G KS P C A
Sbjct: 1021 PDHLKYPLHQLLIRHG-----KSCPRCRA 1044
>gi|398355789|ref|YP_006401253.1| endonuclease III [Sinorhizobium fredii USDA 257]
gi|390131115|gb|AFL54496.1| endonuclease III [Sinorhizobium fredii USDA 257]
Length = 275
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 71/161 (44%), Gaps = 27/161 (16%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
K+ + IK G+ A + +L+ D GS +VP K +E L++ G+G K+
Sbjct: 118 KLRDAIKTIGLYRNKATNVIALSEKLLADFGS-------EVP--KTREELMTLPGVGRKT 168
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
V + VDT++ RIA R+ P + P+ ++ +L+ + P +KYL
Sbjct: 169 ANVVLQMAFGQSTIAVDTHLFRIANRIRLAPGK-TPDEVEANLMRVIP-----EKYL--- 219
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
Y H+ +I G+ C +P C C + C+
Sbjct: 220 ---------YHAHHWLILHGRYVCKARRPECERCIIADICK 251
>gi|448488148|ref|ZP_21607078.1| HhH-GPD family protein [Halorubrum californiensis DSM 19288]
gi|445696410|gb|ELZ48499.1| HhH-GPD family protein [Halorubrum californiensis DSM 19288]
Length = 233
Score = 53.5 bits (127), Expect = 6e-04, Method: Composition-based stats.
Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 18/164 (10%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHG-SVDLEWLRDVPPDKAKE 499
D+ AV AD ++ TI+ G+ + A RI+ L + + G + L +L +P D+AK
Sbjct: 73 DFAAVEAADHEELKETIRVAGLADQKAARIQRALTAIREETGGAYSLAFLDAMPTDEAKG 132
Query: 500 YLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
+L +G+G K+ V VDT+V R++ R G VP E +
Sbjct: 133 WLTEIKGVGPKTASVVLNFHFGKPTMAVDTHVERVSKRFGLVPESASNE-------RAHE 185
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCN 603
VL+ ++ Y LH +I G+ C+ +C+
Sbjct: 186 VLDG----------RIPDELTYPLHVLLIRHGRERCSARGADCD 219
>gi|13541635|ref|NP_111323.1| endonuclease III [Thermoplasma volcanium GSS1]
gi|14325034|dbj|BAB59960.1| endonuclease III [Thermoplasma volcanium GSS1]
Length = 215
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 27/172 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
E + ADV+ + + I + G + A +I + +++RD E+ VP + + LL
Sbjct: 63 EGLASADVSDVGSIISKVGFWRVKAKKII-MIAQIIRD------EYGSKVPA--SMDQLL 113
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
S G+G+K+ V L VDT+V RI+ R+GW + PE L+++ P
Sbjct: 114 SLPGVGVKTASVVLAEGLGIPMIAVDTHVFRISHRIGWSSSKT-PEQTAQDLMQIIP--- 169
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
K LW + ++ FGK C P C+ C + C ++
Sbjct: 170 ---KDLW-----------IGFNPTLVEFGKAVCRPVSPKCSMCRINEFCEYY 207
>gi|160902966|ref|YP_001568547.1| HhH-GPD family protein [Petrotoga mobilis SJ95]
gi|160360610|gb|ABX32224.1| HhH-GPD family protein [Petrotoga mobilis SJ95]
Length = 216
Score = 53.5 bits (127), Expect = 6e-04, Method: Composition-based stats.
Identities = 45/196 (22%), Positives = 88/196 (44%), Gaps = 27/196 (13%)
Query: 416 WDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLN 475
W+++ + +E K+R D L+ E + + +A I+ G N+ + R+K+FL
Sbjct: 41 WNNVEKSIE---NLKQR-----DLLEPEKLSKIKEDDLAQLIRSSGFYNLKSKRLKNFLE 92
Query: 476 RLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIA 535
L + + D++ +++ +E LLS +G+G ++ + + L F +D R+
Sbjct: 93 WLKK--YNYDIDKIKNKSVTSLREELLSIKGIGKETADSILLYAFEMPVFVIDAYTKRMF 150
Query: 536 VRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFC 595
RLG + L + Q + L K D + E H ++ KV+C
Sbjct: 151 SRLGLI---------------LSREYDEFQDFFEKNLTK-DVQLYNEYHALIVKHSKVYC 194
Query: 596 TKSKPNCNACPMRGEC 611
K+ P C+ C ++ +C
Sbjct: 195 KKT-PKCSDCFLKEKC 209
>gi|169350613|ref|ZP_02867551.1| hypothetical protein CLOSPI_01384 [Clostridium spiroforme DSM 1552]
gi|169292667|gb|EDS74800.1| endonuclease III [Clostridium spiroforme DSM 1552]
Length = 214
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 50/112 (44%), Gaps = 17/112 (15%)
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
L S G+G K+ VR + AF VDT+V RI+ RLG+ +++ L
Sbjct: 111 LESLPGVGRKTANVVRSVAFDIPAFAVDTHVERISKRLGFAKKDDNVLNVEKKLCR---- 166
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
SI K W + H+Q I FG+ FC + PNC C + C+
Sbjct: 167 --SIPKERWNKA-----------HHQFIFFGRYFCKATNPNCKECKLFDMCK 205
>gi|218883640|ref|YP_002428022.1| Endonuclease III [Desulfurococcus kamchatkensis 1221n]
gi|218765256|gb|ACL10655.1| Endonuclease III [Desulfurococcus kamchatkensis 1221n]
Length = 238
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 18/128 (14%)
Query: 495 DKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHL 554
++A+ L+ G+G K+ + V L FPVDT++ RI +R+G+ + H+
Sbjct: 129 EEARRLLMELPGVGWKTADVVLLRYFRKPVFPVDTHITRITMRMGFTGSRSYK-----HI 183
Query: 555 LELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
+ S YL +LH +IT G+ C KP CN C +R C++
Sbjct: 184 SRFWMDNTSPGNYL-------------DLHLYLITHGRRTCRARKPLCNKCVLRDMCKYG 230
Query: 615 ASAFASSR 622
R
Sbjct: 231 VDTLDDKR 238
>gi|258648124|ref|ZP_05735593.1| endonuclease III [Prevotella tannerae ATCC 51259]
gi|260852003|gb|EEX71872.1| endonuclease III [Prevotella tannerae ATCC 51259]
Length = 215
Score = 53.5 bits (127), Expect = 6e-04, Method: Composition-based stats.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 16/114 (14%)
Query: 499 EYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY 558
E L G+G K+ V+ + H A VDT+V R++ RLG VP Y
Sbjct: 110 EELTRLPGVGRKTANVVQAVAFHKAALAVDTHVFRVSHRLGLVPKTANTP---------Y 160
Query: 559 PVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
V +++KY + + + H+ ++ G+ CT +P C+ C +RG C+
Sbjct: 161 KVEMALKKY-------IPEEKVAPSHFWLLLHGRYVCTALRPKCDKCDLRGLCK 207
>gi|154249096|ref|YP_001409921.1| endonuclease III [Fervidobacterium nodosum Rt17-B1]
gi|154153032|gb|ABS60264.1| endonuclease III [Fervidobacterium nodosum Rt17-B1]
Length = 221
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 61/135 (45%), Gaps = 19/135 (14%)
Query: 486 LEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQP 545
LE V P+K +E LL G+G K+ V ++ A VDT+V RI+ RLGWV +
Sbjct: 104 LEKYDGVVPNKLEE-LLELPGVGRKTANIVLHVSFDQAALAVDTHVHRISNRLGWVKTKT 162
Query: 546 LPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNAC 605
PE + E ++K + P+L ++ M+ FGK C P C C
Sbjct: 163 -PEQTE----------EELKKIMSPQL-------WGPINGSMVEFGKNICKPISPRCEQC 204
Query: 606 PMRGECRHFASAFAS 620
+ C F + + S
Sbjct: 205 FLTECCDFFKNKYNS 219
>gi|334339915|ref|YP_004544895.1| endonuclease III [Desulfotomaculum ruminis DSM 2154]
gi|334091269|gb|AEG59609.1| endonuclease III [Desulfotomaculum ruminis DSM 2154]
Length = 224
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 69/161 (42%), Gaps = 27/161 (16%)
Query: 451 NKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLK 510
+++AN IK G+ + + + LV +G +VP D+ E L+ G+G K
Sbjct: 80 DQLANDIKGCGLFRNKSKHLVETSRILVEQYGG-------EVPQDR--ESLMLLPGVGRK 130
Query: 511 SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP 570
+ V + FPVDT+V R+A RLG + PE +L L L P + W
Sbjct: 131 TANVVLGVVFGQATFPVDTHVHRLAHRLGLSSGKS-PEQTELDLCALIPPEQ------WQ 183
Query: 571 RLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
R H+Q+I G+ C KP C C + C
Sbjct: 184 R-----------AHHQLIYHGRRVCDARKPKCPDCCVNDLC 213
>gi|325263223|ref|ZP_08129958.1| 8-oxoguanine-DNA-glycosylase [Clostridium sp. D5]
gi|324031616|gb|EGB92896.1| 8-oxoguanine-DNA-glycosylase [Clostridium sp. D5]
Length = 269
Score = 53.1 bits (126), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 481 HGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHL-AFPVDTNVGR 533
+G + L+ +R +P KAKE LL G+G K +C+ L LHHL AFPVDT++ +
Sbjct: 182 NGEISLDAIRKMPYKKAKEELLKLYGVGEKVADCICLFALHHLAAFPVDTHINQ 235
>gi|392377719|ref|YP_004984878.1| DNA-(Apurinic or apyrimidinic site) lyase [Azospirillum brasilense
Sp245]
gi|356879200|emb|CCD00104.1| DNA-(Apurinic or apyrimidinic site) lyase [Azospirillum brasilense
Sp245]
Length = 230
Score = 53.1 bits (126), Expect = 7e-04, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 19/120 (15%)
Query: 494 PDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 553
PD + L++F G+G K + A VD +V RI R G+V P PE +
Sbjct: 123 PD-TPDALMAFHGVGPKIAALTLAVGFGIPAVAVDVHVHRIVNRWGFVA-APTPERTMVA 180
Query: 554 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
L+EL P ++ W E++ +++ FGK CT +P C+ C M CR
Sbjct: 181 LMELLP------RHYW-----------VEINERLVPFGKWICTGDRPRCSTCAMLSMCRQ 223
>gi|154505234|ref|ZP_02041972.1| hypothetical protein RUMGNA_02748 [Ruminococcus gnavus ATCC 29149]
gi|336433960|ref|ZP_08613767.1| endonuclease III [Lachnospiraceae bacterium 2_1_58FAA]
gi|153794432|gb|EDN76852.1| endonuclease III [Ruminococcus gnavus ATCC 29149]
gi|336014865|gb|EGN44696.1| endonuclease III [Lachnospiraceae bacterium 2_1_58FAA]
Length = 208
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 72/167 (43%), Gaps = 27/167 (16%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
AD+ ++ IK G + A I L+ G +VP ++ E L S G+
Sbjct: 67 ADLKELEQDIKPTGFYHNKAKNIIACTRDLLYRFGG-------EVP--RSLEDLTSLAGV 117
Query: 508 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 567
G K+ +R H + VDT+V RI+ RLG + PE ++ L++ P
Sbjct: 118 GRKTANVIRGNIYHDPSVVVDTHVKRISRRLGLTKNED-PEKIETDLMKELPK------- 169
Query: 568 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
D LY + Q+ITFG+ CT P C C ++ C+ F
Sbjct: 170 --------DHWILYNI--QIITFGRSICTARSPKCEQCFLQKYCKEF 206
>gi|456012482|gb|EMF46170.1| Endonuclease III [Planococcus halocryophilus Or1]
Length = 226
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 75/172 (43%), Gaps = 29/172 (16%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
D+ AV + ++ I+ G+ A I+ L+ +H SV VP D+ +
Sbjct: 64 DYVAV---SLEELQQDIRSIGLFRNKAKNIQALSRILIDEHNSV-------VPADR--DL 111
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
L++ G+G K+ V + A VDT+V R+A RLG + P ++ +++ P
Sbjct: 112 LMTLPGVGRKTANVVVSVAFGIPALAVDTHVERVAKRLGLSRWKDNPLQVEETIMKKTPA 171
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
+ W + H+Q+I FG+ C P C+ CP+ CR
Sbjct: 172 DD------WSKT-----------HHQIIFFGRYHCKSQNPGCHICPLFDRCR 206
>gi|15643134|ref|NP_228177.1| endonuclease III [Thermotoga maritima MSB8]
gi|403252815|ref|ZP_10919120.1| endonuclease III [Thermotoga sp. EMP]
gi|418046300|ref|ZP_12684394.1| endonuclease III [Thermotoga maritima MSB8]
gi|8134433|sp|Q9WYK0.1|END3_THEMA RecName: Full=Endonuclease III; AltName: Full=DNA-(apurinic or
apyrimidinic site) lyase
gi|4980869|gb|AAD35453.1|AE001716_16 endonuclease III [Thermotoga maritima MSB8]
gi|351675853|gb|EHA59013.1| endonuclease III [Thermotoga maritima MSB8]
gi|402811577|gb|EJX26061.1| endonuclease III [Thermotoga sp. EMP]
Length = 213
Score = 53.1 bits (126), Expect = 7e-04, Method: Composition-based stats.
Identities = 47/160 (29%), Positives = 67/160 (41%), Gaps = 27/160 (16%)
Query: 455 NTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVEC 514
+ IKE GM A RI + LV +G PD +E LL G+G K+
Sbjct: 67 DLIKESGMYRQKAERIVEISRILVEKYGGR--------VPDSLEE-LLKLPGVGRKTANI 117
Query: 515 VRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCK 574
V + A VDT+V RI+ RLGWV + PE + L +L P + LW
Sbjct: 118 VLWVGFKKPALAVDTHVHRISNRLGWVKTRT-PEETEEALKKLLP------EDLWG---- 166
Query: 575 LDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
++ M+ FG+ C P C C ++ C +
Sbjct: 167 -------PINGSMVEFGRRICKPQNPLCEECFLKNHCEFY 199
>gi|420144137|ref|ZP_14651625.1| Endonuclease III [Lactococcus garvieae IPLA 31405]
gi|391855589|gb|EIT66138.1| Endonuclease III [Lactococcus garvieae IPLA 31405]
Length = 214
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 82/213 (38%), Gaps = 35/213 (16%)
Query: 409 EKQNDFDWDS---------LRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKE 459
E + +W++ L Q G K P D E++ AD+ + I+
Sbjct: 20 EAHGELEWETPFQLLIATILSAQATDKGVNKATPGLFAKYPDPESLAQADIADVEQCIRT 79
Query: 460 RGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLT 519
G+ A I LV + S ++P DK + L + G+G K+ V T
Sbjct: 80 IGLYKTKAKNIVKTSQMLVENFNS-------ELPRDK--KLLQTLPGVGRKTANVVLGET 130
Query: 520 LHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRT 579
VDT+V RI+ RL VP + ++ L++L P +
Sbjct: 131 YGIPGIAVDTHVERISKRLDIVPQKASVLEVEEKLMKLIP-----------------EER 173
Query: 580 LYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
E H+ +I FG+ CT P C CP+ C+
Sbjct: 174 WVESHHHLIFFGRYHCTARAPKCEECPVLEYCK 206
>gi|429331422|ref|ZP_19212179.1| endonuclease III [Pseudomonas putida CSV86]
gi|428763895|gb|EKX86053.1| endonuclease III [Pseudomonas putida CSV86]
Length = 212
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 72/170 (42%), Gaps = 27/170 (15%)
Query: 444 AVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLS 503
A+ V ++ IK G+ N A + + LV HGS +VP + +E L +
Sbjct: 63 AIHALGVEGLSEYIKTIGLYNSKAKNVIETCRILVEQHGS-------EVP--QTREALEA 113
Query: 504 FRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLES 563
G+G K+ V LA VDT++ R++ R G P + + E ++ LL+ P
Sbjct: 114 LPGVGRKTANVVLNTAFRQLAMAVDTHIFRVSNRTGIAPGKNVVE-VEKALLKFVP---- 168
Query: 564 IQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
+ L + H+ +I G+ C KP C +C + C +
Sbjct: 169 -------------KAYLLDAHHWLILHGRYVCQARKPRCGSCRIEDLCEY 205
>gi|81428527|ref|YP_395527.1| DNA repair protein, endonuclease III [Lactobacillus sakei subsp.
sakei 23K]
gi|78610169|emb|CAI55218.1| Putative DNA repair protein, endonuclease III [Lactobacillus sakei
subsp. sakei 23K]
Length = 216
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 68/164 (41%), Gaps = 26/164 (15%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
AD+ I I+ G+ + A I+ +L+ D G +VP A+ L G+
Sbjct: 68 ADLTAIEADIRSIGLYHNKAKHIRTCCQQLITDFGG-------EVPQTHAE--LEQLAGV 118
Query: 508 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 567
G K+ V + +F VDT+V RIA RL + S+++
Sbjct: 119 GRKTANVVLGDAFNVPSFAVDTHVSRIAKRL-----------------TISAENASVRQI 161
Query: 568 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
KL Q+ + H+ +I FG+ CT P CN CP+ C
Sbjct: 162 ETDFQTKLPQKEWVQAHHTLILFGRQVCTARNPKCNQCPLLSIC 205
>gi|300712085|ref|YP_003737899.1| DNA-(apurinic or apyrimidinic site) lyase [Halalkalicoccus jeotgali
B3]
gi|448295774|ref|ZP_21485838.1| DNA-(apurinic or apyrimidinic site) lyase [Halalkalicoccus jeotgali
B3]
gi|299125768|gb|ADJ16107.1| DNA-(apurinic or apyrimidinic site) lyase [Halalkalicoccus jeotgali
B3]
gi|445583873|gb|ELY38202.1| DNA-(apurinic or apyrimidinic site) lyase [Halalkalicoccus jeotgali
B3]
Length = 267
Score = 53.1 bits (126), Expect = 7e-04, Method: Composition-based stats.
Identities = 49/176 (27%), Positives = 79/176 (44%), Gaps = 24/176 (13%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGS-VDLE-WLRDVPPDKAKEY 500
EA+ A +++A TI G+ N + + + + GS + + ++R+ P+ +
Sbjct: 90 EALAEAHRDELAETISSAGLYNQKSDVMIAAAEEIREEFGSEAEFDAFVRESEPETVRSR 149
Query: 501 LLSFRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
LL G+G K+ +CV L + FPVDT+V RI R+G P + E+++ L E P
Sbjct: 150 LLEINGVGPKTADCVLLFSGGRGGVFPVDTHVHRIYRRMGIAPPEADHEAVREVLEEQVP 209
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMRGEC 611
+ C H I FG+ FC+ KP C ACP+ C
Sbjct: 210 AEK----------CGFG-------HTASIQFGREFCSARKPACLDGPEACPLYDCC 248
>gi|121703826|ref|XP_001270177.1| helix-hairpin-helix motif protein [Aspergillus clavatus NRRL 1]
gi|119398321|gb|EAW08751.1| helix-hairpin-helix motif protein [Aspergillus clavatus NRRL 1]
Length = 465
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 75/203 (36%), Gaps = 56/203 (27%)
Query: 437 KDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFL-----------NRLVR------ 479
K S++W+AVR A + + IK G+ ++ + +K L N LV
Sbjct: 242 KGSVNWDAVRQAPLKDVFEAIKRGGLADVKSKNLKAILDMVYEENQARRNILVEGEPGES 301
Query: 480 ------------------DHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLH 521
D + L L + ++A L+ + G+G K+ CV L L
Sbjct: 302 ANVKLKTEGAKEYEIACADQNFLSLNHLHHLSTEEAMTELVKYPGIGPKTAACVLLFCLQ 361
Query: 522 HLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLY 581
F VDT++ RI+ LGWVP E LE+ ++ Y
Sbjct: 362 RPCFAVDTHIFRISKWLGWVPAGKATEVTAFSHLEV----------------RIPDHLKY 405
Query: 582 ELHYQMITFGKVFCTKSKPNCNA 604
LH I GK C P C A
Sbjct: 406 SLHQLFIRHGKT-C----PRCRA 423
>gi|160915277|ref|ZP_02077490.1| hypothetical protein EUBDOL_01286 [Eubacterium dolichum DSM 3991]
gi|158433076|gb|EDP11365.1| endonuclease III [Eubacterium dolichum DSM 3991]
Length = 215
Score = 53.1 bits (126), Expect = 7e-04, Method: Composition-based stats.
Identities = 47/170 (27%), Positives = 74/170 (43%), Gaps = 26/170 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
EA+ A + I IK G+ A ++ LV S +VP A + L
Sbjct: 59 EAMANASLEDIEACIKRIGLYRNKAKSVQALSKALVERFHS-------EVP--HAHKDLT 109
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
S G+G K+ V+ + A VDT+V RI+ RLG L ++Y +E
Sbjct: 110 SLAGVGRKTANVVQSVCFDIPAIAVDTHVERISKRLG--------------LAKVYDNVE 155
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
+++K L K+ + + H+ I FG+ +CT P+C CP C+
Sbjct: 156 TVEKKLKR---KIRKERWNKAHHLFIFFGRYYCTAKNPHCEGCPFVSICK 202
>gi|163852137|ref|YP_001640180.1| HhH-GPD family protein [Methylobacterium extorquens PA1]
gi|163663742|gb|ABY31109.1| HhH-GPD family protein [Methylobacterium extorquens PA1]
Length = 254
Score = 53.1 bits (126), Expect = 7e-04, Method: Composition-based stats.
Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 14/172 (8%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
DW + A V +I TI + A RIK L + G++ L++L D+ D+A+ +
Sbjct: 86 DWTEIEAASVEEIEATIHGVTWPELKAPRIKAVLAAVQERVGALSLDFLGDMSVDEARGW 145
Query: 501 LLSFRGLGLK-SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
L + G+G K S + TL A PVD++ R+A R G + ++ + +
Sbjct: 146 LEAIPGIGPKTSAAVLSFSTLRMPALPVDSHHHRVAQRTGLI-------GAKVDVGPSHA 198
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
VL + W + LY+ H ++ G+ C P C C + C
Sbjct: 199 VLRAQLPDDW------SAQKLYDNHEVLMLHGQRVCFHRSPTCGRCVLLDIC 244
>gi|339442257|ref|YP_004708262.1| hypothetical protein CXIVA_11940 [Clostridium sp. SY8519]
gi|338901658|dbj|BAK47160.1| hypothetical protein CXIVA_11940 [Clostridium sp. SY8519]
Length = 214
Score = 53.1 bits (126), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 70/165 (42%), Gaps = 27/165 (16%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
ADV ++ I+ G A I + +L+ D G +VP A E L+S G+
Sbjct: 69 ADVEEMEQDIRSIGFYRNKARNIINCARKLISDFGG-------EVPS--ALEDLISLPGV 119
Query: 508 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 567
G K+ +R + VDT+V RI+ RLG+ Q PE ++ L++ P K
Sbjct: 120 GRKTANVIRGNIYKDPSIVVDTHVKRISNRLGFTKEQD-PEKIEYDLMKKLP------KD 172
Query: 568 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
W + Q+IT G+ CT P C C + C+
Sbjct: 173 HW-----------ISYNMQIITLGRTICTARSPKCGECFLSDLCK 206
>gi|431805722|ref|YP_007232623.1| endonuclease III [Liberibacter crescens BT-1]
gi|430799697|gb|AGA64368.1| Endonuclease III [Liberibacter crescens BT-1]
Length = 227
Score = 53.1 bits (126), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 27/162 (16%)
Query: 451 NKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLK 510
+KI N IK G+ + I + +++ D S +VP K +E L+S G+G K
Sbjct: 83 DKIRNYIKTIGLYHTKTKNIINLSKKIIEDFNS-------EVP--KTREKLMSLPGVGRK 133
Query: 511 SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP 570
+ V VDT+V RI+ R+ + PE ++ L+ + P
Sbjct: 134 TANVVLSTAFGIKTIAVDTHVFRISNRINLAKGKT-PEKVEEKLMHIVP----------- 181
Query: 571 RLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
++ +Y H ++ G+ C KPNC +C + C+
Sbjct: 182 ------EKYIYHAHNWLVLHGRYICKARKPNCKSCIIADICK 217
>gi|325106521|ref|YP_004276175.1| endonuclease III [Pedobacter saltans DSM 12145]
gi|324975369|gb|ADY54353.1| endonuclease III [Pedobacter saltans DSM 12145]
Length = 239
Score = 53.1 bits (126), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 18/157 (11%)
Query: 482 GSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWV 541
+ L + P+ K+ L G+G K+ + + H A VDT+V R+A R+G
Sbjct: 94 AKILLNEFNGIVPEDVKD-LQKMPGVGRKTANVISSVIYHAPAMAVDTHVFRVANRIGLT 152
Query: 542 PLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPN 601
P +++ L+ P Q ++ H+ +I G+ C P
Sbjct: 153 TNAKTPLAVEKQLVAHLP-----------------QDKIHIAHHWLILHGRYICLARSPK 195
Query: 602 CNACPMRGECRHFASAFASSRLALPGPEEKAIVSANE 638
C+ CP+ G C+++A S L G E A E
Sbjct: 196 CDICPLTGFCKYYAQHNTPSALKRKGELEAKAKIAKE 232
>gi|410459338|ref|ZP_11313089.1| endonuclease III [Bacillus azotoformans LMG 9581]
gi|409930314|gb|EKN67315.1| endonuclease III [Bacillus azotoformans LMG 9581]
Length = 217
Score = 53.1 bits (126), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 77/179 (43%), Gaps = 29/179 (16%)
Query: 434 EHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVP 493
E K D+ AV + ++ N I+ G+ A I+ N L+ ++G V VP
Sbjct: 57 EKYKKPEDYLAV---SLEELQNDIRSIGLFRNKAKNIQKLCNMLLEEYGGV-------VP 106
Query: 494 PDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 553
D+ L+ G+G K+ V + A VDT+V R++ RLG + ++
Sbjct: 107 KDRLS--LMKLPGVGRKTANVVMSVAYGIPAIAVDTHVERVSKRLGICRWKDSVLEVEET 164
Query: 554 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
L++ P + LW + H+++I FG+ C +P C CP+ CR
Sbjct: 165 LMKKVP------EELWS-----------QTHHRLIFFGRYHCKAQRPQCEICPLLDICR 206
>gi|383479909|ref|YP_005388803.1| endonuclease III protein Nth [Streptococcus pyogenes MGAS15252]
gi|383493824|ref|YP_005411500.1| endonuclease III protein Nth [Streptococcus pyogenes MGAS1882]
gi|378927899|gb|AFC66105.1| endonuclease III protein Nth [Streptococcus pyogenes MGAS15252]
gi|378929552|gb|AFC67969.1| endonuclease III protein Nth [Streptococcus pyogenes MGAS1882]
Length = 218
Score = 52.8 bits (125), Expect = 8e-04, Method: Composition-based stats.
Identities = 45/223 (20%), Positives = 91/223 (40%), Gaps = 35/223 (15%)
Query: 409 EKQNDFDWDS---------LRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKE 459
E + + DW++ L Q K P + + E + A+++ + N ++
Sbjct: 21 EAKGELDWETPFQLLIAVILSAQTTDKAVNKVTPGLWQSYPEIEDLAFAELSDVENALRT 80
Query: 460 RGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLT 519
G+ K+ +++ ++ ++ VP K E L S G+G K+ V
Sbjct: 81 IGL-------YKNKAKNIIKTAQAIRDDFKGQVP--KTHEELESLPGVGRKTANVVLAEV 131
Query: 520 LHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRT 579
A VDT+V R++ RL L + ++ L+ K+ ++
Sbjct: 132 YGVPAIAVDTHVARVSKRLNISSLDADVKQIEADLM-----------------AKIPKKD 174
Query: 580 LYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSR 622
H+++I FG+ C KP C CP++ C+++ + + S+
Sbjct: 175 WIITHHRLIFFGRYHCLAKKPKCEICPVQSYCKYYQNTYGKSK 217
>gi|312136836|ref|YP_004004173.1| endonuclease iii ;DNA-(apurinic or apyrimidinic site) lyase
[Methanothermus fervidus DSM 2088]
gi|311224555|gb|ADP77411.1| endonuclease III ;DNA-(apurinic or apyrimidinic site) lyase
[Methanothermus fervidus DSM 2088]
Length = 209
Score = 52.8 bits (125), Expect = 8e-04, Method: Composition-based stats.
Identities = 55/206 (26%), Positives = 86/206 (41%), Gaps = 37/206 (17%)
Query: 417 DSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANT--------IKERGMNNMLAG 468
D + +E ++ + E+TK + + + KIAN IK G + A
Sbjct: 26 DPYKVLIETILSQRTKDENTKKASKKLFSKYDTIEKIANAQEKDLEKLIKCVGFYRVKAK 85
Query: 469 RIKDFLNRLVRDH-GSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPV 527
RIK L+ + G V P KE LL G+G K+ CV + + A PV
Sbjct: 86 RIKKISKILINKYDGKV---------PKNLKE-LLKLPGVGRKTANCVLVYGFNEDAIPV 135
Query: 528 DTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQM 587
DT+V R+A R+G V + PE + L ++ P + W + KL
Sbjct: 136 DTHVHRVANRIGLVNTKT-PEETEKTLRKIIP------RDYWKEVNKL-----------F 177
Query: 588 ITFGKVFCTKSKPNCNACPMRGECRH 613
+ FGK C + P CP++ C++
Sbjct: 178 VEFGKNICKPTNPKHEKCPIKKFCKY 203
>gi|254168132|ref|ZP_04874979.1| base excision DNA repair protein, HhH-GPD family [Aciduliprofundum
boonei T469]
gi|197622898|gb|EDY35466.1| base excision DNA repair protein, HhH-GPD family [Aciduliprofundum
boonei T469]
Length = 211
Score = 52.8 bits (125), Expect = 8e-04, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 19/121 (15%)
Query: 494 PDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 553
PD ++ LL G+G K+ V VDT+V RI+ RLGWV + PE +
Sbjct: 104 PDNLED-LLKLPGVGRKTANIVLSRCYDKDVIAVDTHVHRISNRLGWVNTKT-PEETERE 161
Query: 554 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
L+++ P +KY W + +L ++ FG+ C P C+ CP++ C++
Sbjct: 162 LMKVLP-----KKY-WKDINEL-----------LVMFGRTICRPVAPKCDVCPIKKYCKY 204
Query: 614 F 614
+
Sbjct: 205 Y 205
>gi|380490652|emb|CCF35867.1| base excision DNA repair protein [Colletotrichum higginsianum]
Length = 143
Score = 52.8 bits (125), Expect = 9e-04, Method: Composition-based stats.
Identities = 47/161 (29%), Positives = 67/161 (41%), Gaps = 33/161 (20%)
Query: 476 RLVRD----HGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNV 531
RL+ D HG DL+ L + ++A + ++S+ GLG K C+ + L AF VDT++
Sbjct: 2 RLLXDVKERHGKWDLQHLFNASDEEAVKEVVSYWGLGPKCAFCLLSICLKRDAFAVDTHI 61
Query: 532 GRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFG 591
RI GW P E Q HL P Y LHYQ I G
Sbjct: 62 YRITGLWGWRPKDASKELAQAHLDARIP-----------------NEIKYALHYQFIVHG 104
Query: 592 KVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKA 632
+ C AC G+ + A ++AL E+K+
Sbjct: 105 R--------QCPACRGNGDSK----ARCEYKVALKEVEKKS 133
>gi|239623210|ref|ZP_04666241.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239522176|gb|EEQ62042.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 261
Score = 52.8 bits (125), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 69/169 (40%), Gaps = 27/169 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
E AD+ ++ I G +M A I LV G + + D L
Sbjct: 115 EKFAAADLKELEKDIHSTGFYHMKAKNIIACCKDLVEKFGGQVPDTIED---------LT 165
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
S G+G K+ +R + + VDT+V RI+ +LG + PE ++ L+++ P
Sbjct: 166 SLAGVGRKTANVIRGNIYNEPSIVVDTHVKRISRKLGLTKEED-PEKIEYDLMKVLPK-- 222
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
D L+ +H +IT G+ C +P C C +R +C
Sbjct: 223 -------------DHWILWNIH--IITLGRTICIARRPGCGQCFLREDC 256
>gi|448350252|ref|ZP_21539071.1| HhH-GPD family protein [Natrialba taiwanensis DSM 12281]
gi|445637759|gb|ELY90907.1| HhH-GPD family protein [Natrialba taiwanensis DSM 12281]
Length = 276
Score = 52.8 bits (125), Expect = 9e-04, Method: Composition-based stats.
Identities = 43/139 (30%), Positives = 57/139 (41%), Gaps = 22/139 (15%)
Query: 494 PDKAKEYLLSFRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQL 552
P + +E LL RG+G K+ +CV L FPVDT+V RI RLG P E ++
Sbjct: 151 PGEVRETLLDVRGVGPKTADCVLLFAGGRGGVFPVDTHVHRIYRRLGIAPPDADHEDVR- 209
Query: 553 HLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMR 608
E ++ + C H I FG+ FCT KP C ACPM
Sbjct: 210 ---------EVVEDEVPTAKCGFG-------HTATIQFGREFCTARKPACLDDPEACPMA 253
Query: 609 GECRHFASAFASSRLALPG 627
C A+ + P
Sbjct: 254 DICDQVGVYPATDEVVDPA 272
>gi|13472772|ref|NP_104339.1| endonuclease III [Mesorhizobium loti MAFF303099]
gi|14023519|dbj|BAB50125.1| endonuclease III [Mesorhizobium loti MAFF303099]
Length = 238
Score = 52.8 bits (125), Expect = 9e-04, Method: Composition-based stats.
Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 27/161 (16%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
K+ + I+ G+ A + L+RDHG V PD ++ L+ G+G K+
Sbjct: 77 KVGDYIRTIGLWRNKAKNVIALSEALIRDHGGV--------VPD-GRDELVKLPGVGRKT 127
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
V + VDT++ RI RLG P + PE ++ LL++ P
Sbjct: 128 ANVVLNMAFGQHTMAVDTHIFRIGNRLGLAPGKT-PEQVEQGLLKIIP------------ 174
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
+ H+ +I G+ C KP+C AC + C+
Sbjct: 175 -----DEYMRHAHHWLILHGRYVCKARKPDCPACVIADICK 210
>gi|404398986|ref|ZP_10990570.1| endonuclease III [Pseudomonas fuscovaginae UPB0736]
Length = 212
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 27/171 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
EA+ V ++ IK G+ N A + + L+ HGS +VP + +E L
Sbjct: 62 EAIYALGVEGLSEYIKTIGLYNSKAKNVIETCRLLIELHGS-------EVP--QTREALE 112
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
+ G+G K+ V L VDT++ R++ R G P + + E ++ L++ P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQLTMAVDTHIFRVSNRTGLAPGKNVLE-VEKQLMKFVP--- 168
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
++YL LD H+ +I G+ C KP C +C + C +
Sbjct: 169 --KQYL------LDS------HHWLILLGRYVCQARKPRCGSCRIEDLCEY 205
>gi|254561880|ref|YP_003068975.1| hypothetical protein METDI3481 [Methylobacterium extorquens DM4]
gi|254269158|emb|CAX25124.1| hypothetical protein METDI3481 [Methylobacterium extorquens DM4]
Length = 254
Score = 52.8 bits (125), Expect = 0.001, Method: Composition-based stats.
Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 14/172 (8%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
DW + A V +I TI + A RIK L + G++ L++L D+ D+A+ +
Sbjct: 86 DWTEIGAASVEEIETTIHGVTWPELKAPRIKAVLAAVQERVGALTLDFLGDMSVDEARGW 145
Query: 501 LLSFRGLGLK-SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
L + G+G K S + TL A PVD++ R+A R G + ++ + +
Sbjct: 146 LEAIPGIGPKTSAAVLSFSTLRMPALPVDSHHHRVAQRTGLI-------GAKVDVGPSHA 198
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
VL + W + LY+ H ++ G+ C P C+ C + C
Sbjct: 199 VLRAQLPDDW------SAQKLYDNHEVLMLHGQRVCFHRSPACDRCVLLDIC 244
>gi|415726092|ref|ZP_11470593.1| Putative EndoIII-related endonuclease [Gardnerella vaginalis
00703Dmash]
gi|388063965|gb|EIK86533.1| Putative EndoIII-related endonuclease [Gardnerella vaginalis
00703Dmash]
Length = 223
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 68/165 (41%), Gaps = 22/165 (13%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRD-HGSVDLEWLRDVPPDKAKEYLLSFRG 506
A V ++ + IK G + A + RL HG V P K ++ L S G
Sbjct: 73 ASVEQVESIIKPLGFYRVKAQHVIALSLRLESAFHGVV---------PSKMED-LTSLPG 122
Query: 507 LGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQK 566
+G K+ VR FPVDT+V R+ RLGW P+ Y ESI+K
Sbjct: 123 VGRKTANVVRGNAFGLPGFPVDTHVIRVTGRLGWRKDCNKPKK--------YANPESIEK 174
Query: 567 YLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
+ D L +++I G+ CT P C CP++ C
Sbjct: 175 EI---TSYFDPADWANLSHRLILHGRKICTARNPKCALCPLKTTC 216
>gi|126667563|ref|ZP_01738533.1| endonuclease III [Marinobacter sp. ELB17]
gi|126627989|gb|EAZ98616.1| endonuclease III [Marinobacter sp. ELB17]
Length = 212
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 70/169 (41%), Gaps = 27/169 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
EA+ V+ + IK G+ N AG + L+ H S VP + +E L
Sbjct: 62 EAIFALGVDGLKEYIKTIGLFNSKAGNVIKTCRALIDRHAS-------QVP--RTREELE 112
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
+ G+G K+ V +A VDT++ R++ R G P + + E ++ L+ L P
Sbjct: 113 ALPGVGRKTANVVLNTAFGQIAMAVDTHIFRVSNRTGIAPGKNVLE-VEKRLIRLVP--- 168
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
Q L + H+ +I G+ C KP C AC + C
Sbjct: 169 --------------QEFLLDAHHWLILHGRYTCIARKPRCGACLIEDLC 203
>gi|389748166|gb|EIM89344.1| DNA glycosylase [Stereum hirsutum FP-91666 SS1]
Length = 405
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 66/160 (41%), Gaps = 20/160 (12%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDV--PPDKAKEYLLSFR 505
A + IK G+ AG I+ L + G L++L + + L+S+
Sbjct: 209 APTEDVVEAIKSGGLARRKAGIIQGLLKSVKEKWGRYSLQFLMEGRWSDEAIMRELVSYP 268
Query: 506 GLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQ 565
G+G K+ CV L L +F VDT+V R++ LGWVP + + + L+
Sbjct: 269 GVGPKTAACVLLFCLGRDSFAVDTHVFRLSRVLGWVPRAKSATKVAIDRVNTQMHLDV-- 326
Query: 566 KYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNAC 605
++ P L Y LH M+T G+ C C
Sbjct: 327 -HIPPHL-------KYPLHVLMVTHGRA--------CKGC 350
>gi|110635893|ref|YP_676101.1| endonuclease III / DNA-(apurinic or apyrimidinic site) lyase
[Chelativorans sp. BNC1]
gi|110286877|gb|ABG64936.1| endonuclease III / DNA-(apurinic or apyrimidinic site) lyase
[Chelativorans sp. BNC1]
Length = 268
Score = 52.8 bits (125), Expect = 0.001, Method: Composition-based stats.
Identities = 43/161 (26%), Positives = 67/161 (41%), Gaps = 27/161 (16%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
K+ I+ G+ A + L+RDHG VP D+ E L G+G K+
Sbjct: 104 KLGEYIRTIGLWRNKAKNVIALCEALIRDHGG-------QVPEDR--EALTKLPGVGRKT 154
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
V + H VDT++ RI+ R+ P + PE ++ LL++ P
Sbjct: 155 ANVVLNVAFGHPTMAVDTHIFRISNRILLAPGKT-PEEVEQALLKVIP------------ 201
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
Q L H+ +I G+ C KP+C AC + C+
Sbjct: 202 -----QHYLLHAHHWLILHGRYVCKARKPDCPACVIADLCK 237
>gi|409082861|gb|EKM83219.1| hypothetical protein AGABI1DRAFT_33588 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 335
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 85/190 (44%), Gaps = 36/190 (18%)
Query: 439 SLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAK 498
+L +A+ A+ + ++ I + G AG IK RL+ D S DVP K
Sbjct: 128 TLSIDAIVSAEESTVSAAINKVGFWRRKAGYIKQTAQRLLHDFDS-------DVP--KTV 178
Query: 499 EYLLSFRGLGLKSVECVRLLTLH-----HLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 553
+ L S G+G K + +L LH + VD++V RI LGW +P + +
Sbjct: 179 KELCSLPGVGPK----MAILALHVAWDINTGIGVDSHVHRITNLLGWYN-KPTKSAEETR 233
Query: 554 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPM--RGEC 611
L S+Q +L + E++ ++ FG+V C +KP C+ C + RG C
Sbjct: 234 L--------SLQSWLPAEFHR-------EINGLLVGFGQVICLPTKPRCDTCELSARGLC 278
Query: 612 RHFASAFASS 621
+ AF ++
Sbjct: 279 PNARMAFKAT 288
>gi|297584383|ref|YP_003700163.1| endonuclease III [Bacillus selenitireducens MLS10]
gi|297142840|gb|ADH99597.1| endonuclease III [Bacillus selenitireducens MLS10]
Length = 217
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 67/156 (42%), Gaps = 26/156 (16%)
Query: 457 IKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVR 516
I+ G+ A IK ++ D+ ++P K+K L G+G K+ V
Sbjct: 77 IRSIGLYRSKAKNIKKLAQSVIDDYQG-------EIP--KSKTELKKLAGVGRKTANVVA 127
Query: 517 LLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLD 576
+ A VDT+V R++ RLG + VLE ++K L + K+
Sbjct: 128 SVAFDEPAIAVDTHVERVSKRLGICRWKD-------------SVLE-VEKTL---MKKIP 170
Query: 577 QRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
+ H++MI FG+ C PNC ACP+ CR
Sbjct: 171 REEWSVTHHRMIFFGRYHCKAQNPNCTACPLSDMCR 206
>gi|156937657|ref|YP_001435453.1| HhH-GPD family protein [Ignicoccus hospitalis KIN4/I]
gi|156566641|gb|ABU82046.1| HhH-GPD family protein [Ignicoccus hospitalis KIN4/I]
Length = 212
Score = 52.8 bits (125), Expect = 0.001, Method: Composition-based stats.
Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 20/114 (17%)
Query: 498 KEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEL 557
K L +G+G K+ + V L++ H FPVDT+V R+A RLG V E
Sbjct: 111 KGVLTRIKGIGEKTADVV-LMSFGHEEFPVDTHVKRVAKRLGLVDGNAYKE--------- 160
Query: 558 YPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
+ RL +L + E H +I G+ +C KP C+ CP+ C
Sbjct: 161 ----------VSSRLKELFKGRTREAHMYLILLGRKYCKAKKPLCSECPLSDLC 204
>gi|161527564|ref|YP_001581390.1| DNA-(apurinic or apyrimidinic site) lyase [Nitrosopumilus maritimus
SCM1]
gi|160338865|gb|ABX11952.1| DNA-(apurinic or apyrimidinic site) lyase [Nitrosopumilus maritimus
SCM1]
Length = 218
Score = 52.8 bits (125), Expect = 0.001, Method: Composition-based stats.
Identities = 36/145 (24%), Positives = 66/145 (45%), Gaps = 20/145 (13%)
Query: 476 RLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIA 535
R++ +D ++ VP D + L+ G+G K+ CV + A PVD +V RI+
Sbjct: 94 RIIEVAKIIDSKYKGKVPEDL--DTLVQLPGVGRKTANCVLVYAFEKPAIPVDIHVHRIS 151
Query: 536 VRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFC 595
RLG V + PE + L++ K+D++ +++ + +G+ C
Sbjct: 152 NRLGLVETKN-PEETEQELMK-----------------KVDKKFWIDINDTFVMYGQNIC 193
Query: 596 TKSKPNCNACPMRGECRHFASAFAS 620
P C+ C ++ C+ + S AS
Sbjct: 194 KPISPMCDVCKIKRSCKFYKSKNAS 218
>gi|149185053|ref|ZP_01863370.1| endonuclease III [Erythrobacter sp. SD-21]
gi|148831164|gb|EDL49598.1| endonuclease III [Erythrobacter sp. SD-21]
Length = 215
Score = 52.4 bits (124), Expect = 0.001, Method: Composition-based stats.
Identities = 46/178 (25%), Positives = 72/178 (40%), Gaps = 35/178 (19%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
EA+ D + IA IK G+ N I+ F L+ +HG V PD +E L+
Sbjct: 67 EAMLELDDSAIAAAIKPCGLYNTKTRSIRRFCEALLAEHGGV--------VPD-TREGLM 117
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
G+G K + V T VDT+V R+ R+G + ++
Sbjct: 118 RLPGIGRKCADIVLSFTFGKDVIAVDTHVHRVCNRIGLTAAKTAEKTAA----------- 166
Query: 563 SIQKYLWPRLCKLDQRT----LYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFAS 616
+LD+R+ L + H+ ++ FGK CT P C CP+ C + +
Sbjct: 167 -----------QLDERSPEWALGDGHFWLVQFGKRICTARAPKCQTCPVGSLCEAYPA 213
>gi|266619530|ref|ZP_06112465.1| endonuclease III [Clostridium hathewayi DSM 13479]
gi|288868941|gb|EFD01240.1| endonuclease III [Clostridium hathewayi DSM 13479]
Length = 217
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 69/164 (42%), Gaps = 27/164 (16%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
AD+ ++ I G +M A I L+ G VP + E L S G+
Sbjct: 76 ADLKELEKDIHSIGFYHMKAKNIISCCQGLLERFGG-------QVP--RTIEELTSLAGV 126
Query: 508 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 567
G K+ +R H + VDT+V RI+ +LG+ + PE +++ L+++ P I
Sbjct: 127 GRKTANVIRGNIYHEPSIVVDTHVKRISRKLGFAKAED-PEKIEMELMKVLPKEHWI--- 182
Query: 568 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
LW + Q+IT G+ C P C C +R C
Sbjct: 183 LW--------------NIQIITLGRSICFARSPKCKECFLREYC 212
>gi|85710083|ref|ZP_01041148.1| Endonuclease III/Nth [Erythrobacter sp. NAP1]
gi|85688793|gb|EAQ28797.1| Endonuclease III/Nth [Erythrobacter sp. NAP1]
Length = 217
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 63/159 (39%), Gaps = 27/159 (16%)
Query: 453 IANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSV 512
IA IK G+ N I+ F L+ +H V PD +E L+S G+G K
Sbjct: 77 IAKAIKPCGLYNNKTKNIRKFCTALIEEHDGV--------VPD-TREGLMSLPGIGRKCA 127
Query: 513 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRL 572
+ V T VDT+V R+ R+G + ++ Q L E P
Sbjct: 128 DIVMSFTFGKDVIAVDTHVHRVCNRIGLTDAKTAEKTAQ-QLEERSP------------- 173
Query: 573 CKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
+ L + H+ +I FGK C P C+ C + C
Sbjct: 174 ----EWALADGHFWLIQFGKRVCRSRIPKCDICVVSDLC 208
>gi|269986417|gb|EEZ92704.1| DNA-(apurinic or apyrimidinic site) lyase [Candidatus Parvarchaeum
acidiphilum ARMAN-4]
Length = 229
Score = 52.4 bits (124), Expect = 0.001, Method: Composition-based stats.
Identities = 46/162 (28%), Positives = 67/162 (41%), Gaps = 26/162 (16%)
Query: 450 VNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGL 509
+N+I I G + A +K N L+++ S VP KE L++ G+G
Sbjct: 69 INQIEKLIYPVGFFHTKAKLVKSACNVLIKEFNS-------KVP--STKEKLMTIPGVGN 119
Query: 510 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 569
K V + VDT+V RI+ RLG VP PE +L +LESI
Sbjct: 120 KVASLVLEWGFNLPYIAVDTHVNRISQRLGIVPEGTKPEKTEL-------ILESI----- 167
Query: 570 PRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
L+ + +Y + FG+ C P C CP+ C
Sbjct: 168 -----LNPKLRITTNYSFVKFGREICRPINPLCGKCPVYSYC 204
>gi|452820109|gb|EME27156.1| HhH-GPD base excision DNA repair protein-related protein [Galdieria
sulphuraria]
Length = 203
Score = 52.4 bits (124), Expect = 0.001, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 44/86 (51%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
DW V A + + I+ G+ A RIK+ L L ++ G + LE LR + ++
Sbjct: 110 DWNQVIEAPLRDVEECIRVAGLAKTKAARIKELLETLQKERGELSLESLRGSCTETVEKE 169
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFP 526
L F+G+GLK++ CV +L FP
Sbjct: 170 LSRFKGVGLKTMACVSAFSLGLQVFP 195
>gi|315425726|dbj|BAJ47382.1| endonuclease III [Candidatus Caldiarchaeum subterraneum]
gi|343484521|dbj|BAJ50175.1| endonuclease III [Candidatus Caldiarchaeum subterraneum]
Length = 217
Score = 52.4 bits (124), Expect = 0.001, Method: Composition-based stats.
Identities = 48/179 (26%), Positives = 75/179 (41%), Gaps = 26/179 (14%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
D + ADV +A IK G A RIK + G VP ++A+
Sbjct: 62 DPRDIASADVRTVARLIKPVGFYRQKAKRIKQLAKIVYGKLGG-------RVPDNRAE-- 112
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
LL G+G KS + V + + VDT+V +A RLG + +
Sbjct: 113 LLKLPGVGPKSADIVLSIAFNRPEIAVDTHVETVAKRLG--------------IADGKAG 158
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFA 619
E ++K L L K D L +++ + FG+ C + +P C+ CP+ CR++ A
Sbjct: 159 YEEVKKAL-TTLSKPDDIRL--INHLFVKFGREICRRPRPRCSLCPITEYCRYYREVIA 214
>gi|78356480|ref|YP_387929.1| HhH-GPD family protein [Desulfovibrio alaskensis G20]
gi|78218885|gb|ABB38234.1| HhH-GPD family protein [Desulfovibrio alaskensis G20]
Length = 221
Score = 52.4 bits (124), Expect = 0.001, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 73/183 (39%), Gaps = 16/183 (8%)
Query: 426 NGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVD 485
N G+ + + D L V A + + ++ G A ++ + + + + D
Sbjct: 46 NAGQALQRMRSADMLSESGVAAAAPDTLEELVRPAGFYRQKAATLRRLV-QFLYEEADGD 104
Query: 486 LEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQP 545
+ L D + LL +G+G ++ + + L L +F VD RI VR G +P
Sbjct: 105 IRNLAGTSMDSLRARLLDIKGIGPETADSILLYALDMPSFVVDAYTRRICVRHGLLPEDV 164
Query: 546 LPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNAC 605
++ +++ P D E H ++ K +C K+ P C++C
Sbjct: 165 QYAEMREFFMDVLPA---------------DVSVYNEYHALLVRVAKEWCRKTHPRCDSC 209
Query: 606 PMR 608
P+R
Sbjct: 210 PLR 212
>gi|398829286|ref|ZP_10587486.1| putative endoIII-related endonuclease [Phyllobacterium sp. YR531]
gi|398218144|gb|EJN04661.1| putative endoIII-related endonuclease [Phyllobacterium sp. YR531]
Length = 232
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 71/173 (41%), Gaps = 14/173 (8%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYL 501
WEAV A +I + I + + I + L+ +++ +GS++L+ L + ++A +L
Sbjct: 67 WEAVANASPERINDCIYKITFSQTYCVFIPEALSTIIKRYGSLNLDTLSGMTVEQALHFL 126
Query: 502 LSFRGLGLKSVECV-RLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
RG+G K CV TLH A VDT+ R A R + Q
Sbjct: 127 QQLRGVGPKISACVLNFSTLHMRALVVDTHYLRFAARFQLIKSQK----------NYVKN 176
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
+ IQ+ + D E H + + FC P C CP+ C +
Sbjct: 177 IRVIQRLVPNSWLASDTE---EHHVLVKQLAQEFCVAGTPRCARCPLSDLCNY 226
>gi|333396087|ref|ZP_08477904.1| endonuclease III [Lactobacillus coryniformis subsp. coryniformis
KCTC 3167]
Length = 216
Score = 52.4 bits (124), Expect = 0.001, Method: Composition-based stats.
Identities = 47/182 (25%), Positives = 74/182 (40%), Gaps = 26/182 (14%)
Query: 430 KERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWL 489
K P+ +D D +A+ A + I G+ A +K L+ D V
Sbjct: 50 KVTPKLFRDFPDPQAMAAASETALQADIHSIGLYRNKAKHMKAASQALLDDFNGV----- 104
Query: 490 RDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPES 549
VP +A+ L+ G+G K+ + V AF VDT+V R+ RL VP +
Sbjct: 105 --VPSTRAE--LMQLPGVGRKTADVVLADAFGIPAFAVDTHVTRVTKRLRMVPQKATVLE 160
Query: 550 LQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRG 609
++ +++L P + LW H++MI FG+ C P C CP+
Sbjct: 161 IEQRMMKLLP------EDLW-----------VTAHHRMIYFGRYHCLARAPKCEQCPLLS 203
Query: 610 EC 611
C
Sbjct: 204 MC 205
>gi|325264606|ref|ZP_08131336.1| endonuclease III [Clostridium sp. D5]
gi|324030268|gb|EGB91553.1| endonuclease III [Clostridium sp. D5]
Length = 208
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 72/167 (43%), Gaps = 27/167 (16%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
AD+ ++ IK G + A I L+ G +VP ++ E L S G+
Sbjct: 67 ADLEELEQDIKPTGFYHTKAKNIIACTRALINRFGG-------EVP--RSLEDLTSLAGV 117
Query: 508 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 567
G K+ +R + + VDT+V RI+ RLG + PE ++ L++ P
Sbjct: 118 GRKTANVIRGNIYYEPSVVVDTHVKRISKRLGLTKHED-PEKIEQDLMKELPK------- 169
Query: 568 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
D LY + Q+ITFG+ CT P C C ++ C+ +
Sbjct: 170 --------DHWILYNI--QIITFGRSICTARSPKCGECFLQKYCKEY 206
>gi|225683840|gb|EEH22124.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 451
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 25/128 (19%)
Query: 439 SLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGS--------------- 483
S+DW+ VR A + ++ N +K G+ + + IK L+ +V + G
Sbjct: 219 SVDWDKVRQATLEEVYNAMKAGGLGRVKSRYIKRILD-MVHEEGVARRNAMGMGGDIYQE 277
Query: 484 ---------VDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRI 534
+ L L + D+A + G+G+K+ CV L L F VDT+V R+
Sbjct: 278 GDGNGHEHILSLNHLHTLSKDEAMLEFTKYPGIGVKTAACVILFCLRQPCFAVDTHVVRL 337
Query: 535 AVRLGWVP 542
LGW+P
Sbjct: 338 CKWLGWLP 345
>gi|302890387|ref|XP_003044078.1| hypothetical protein NECHADRAFT_5986 [Nectria haematococca mpVI
77-13-4]
gi|256724997|gb|EEU38365.1| hypothetical protein NECHADRAFT_5986 [Nectria haematococca mpVI
77-13-4]
Length = 243
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 67/163 (41%), Gaps = 22/163 (13%)
Query: 451 NKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWL-RDVPPDKAKEYLLSFRGLGL 509
+K+ + ++ GM N A + L + +G DL+ L D+ + + F G+G
Sbjct: 95 DKLVDALRPGGMQNRKAKILMTLLKDVEAKYGKWDLQHLFTKTDDDEVIDEVTKFWGIGP 154
Query: 510 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 569
K C+ + L F VDT++ R++ GW P + + Q HL P
Sbjct: 155 KCAHCLLSICLKRDVFAVDTHIYRLSGLWGWRPAKATKLTAQAHLDARIP---------- 204
Query: 570 PRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
+ LHY MI+ G C K + N N RG C+
Sbjct: 205 -------NELKFPLHYLMISHGSS-CPKCRGNGNP---RGHCK 236
>gi|403667443|ref|ZP_10932749.1| endonuclease III [Kurthia sp. JC8E]
Length = 219
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 72/163 (44%), Gaps = 26/163 (15%)
Query: 450 VNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGL 509
+ ++ I+ G+ A I+ RL+ +G ++P +E L++ G+G
Sbjct: 70 LEELEQDIRSIGLFRSKAKNIQKLCQRLLDVYGG-------EIPA--VREELVTLPGVGR 120
Query: 510 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 569
K+ V + A VDT+V RIA RLG + ++LE V ++I K
Sbjct: 121 KTANVVLSVAFGEPAMAVDTHVERIAKRLGLCRWKD-------NVLE---VEQTIMK--- 167
Query: 570 PRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
K + + H+QMI FG+ C KP C CP+ CR
Sbjct: 168 ----KTPRERWSKAHHQMIFFGRYHCKSQKPGCGECPLFTLCR 206
>gi|317148991|ref|XP_003190266.1| HhH-GPD family base excision DNA repair protein [Aspergillus oryzae
RIB40]
Length = 457
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 73/203 (35%), Gaps = 56/203 (27%)
Query: 437 KDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVR----------------- 479
K S++W+AVR A + + IK G+ ++ + +K L+ + +
Sbjct: 227 KGSVNWDAVRQAPLKDVFEAIKSGGLADVKSKNLKAILDMVHKENQERREILVKGEDAGP 286
Query: 480 ------------------DHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLH 521
D + L L + ++ E L+ + G+G K+ CV L L
Sbjct: 287 PDLMQKSEGSKQYEIACADQHFLSLNHLHTLNTEQVMEELIKYPGIGPKTAACVLLFCLQ 346
Query: 522 HLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLY 581
F VDT++ RI LGWVP E LE+ ++ Y
Sbjct: 347 RPCFAVDTHIFRICKWLGWVPPDKATEITAFGHLEV----------------RIPDHLKY 390
Query: 582 ELHYQMITFGKVFCTKSKPNCNA 604
LH I GK P C A
Sbjct: 391 SLHQLFIRHGKTC-----PRCRA 408
>gi|313672755|ref|YP_004050866.1| hhh-gpd family protein [Calditerrivibrio nitroreducens DSM 19672]
gi|312939511|gb|ADR18703.1| HhH-GPD family protein [Calditerrivibrio nitroreducens DSM 19672]
Length = 212
Score = 52.4 bits (124), Expect = 0.001, Method: Composition-based stats.
Identities = 48/199 (24%), Positives = 89/199 (44%), Gaps = 30/199 (15%)
Query: 416 WDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLN 475
W ++ R +E N K E L E + D +++AN I+ G N A R+ F +
Sbjct: 37 WRNVERSIE-NLKKFEL-------LSPEKILGLDFSELANLIRPSGFYNQKAERLIIF-S 87
Query: 476 RLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIA 535
R + + + D+++L + A++ LL +G+G ++ + + L H F +D R+
Sbjct: 88 RFILEECNGDIKYLNKLETADARKRLLLLKGVGPETADSILLYACDHTIFVIDKYTMRMF 147
Query: 536 VR--LGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKV 593
R +GW + Q +++EL P +I ++ H ++ K
Sbjct: 148 NRVGMGWSEKYDI---FQKNIMELLPHDLNIYRH---------------YHALIVENSKN 189
Query: 594 FCTKSKPNCNACPMRGECR 612
+C +SKP C CP+ C+
Sbjct: 190 YC-RSKPFCEGCPIAKICK 207
>gi|238494280|ref|XP_002378376.1| HhH-GPD family base excision DNA repair protein [Aspergillus flavus
NRRL3357]
gi|220695026|gb|EED51369.1| HhH-GPD family base excision DNA repair protein [Aspergillus flavus
NRRL3357]
Length = 468
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 76/203 (37%), Gaps = 56/203 (27%)
Query: 437 KDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNR-----------LVR--DHGS 483
K S++W+AVR A + + IK G+ ++ + +K L+ LV+ D G
Sbjct: 238 KGSVNWDAVRQAPLKDVFEAIKSGGLADVKSKNLKAILDMVHKENQERREILVKGEDAGP 297
Query: 484 VDL----------------------EWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLH 521
DL L + ++ E L+ + G+G K+ CV L L
Sbjct: 298 SDLMQKSEGSKQYEIACADQHFLSLNHLHTLNTEQVMEELIKYPGIGPKTAACVLLFCLQ 357
Query: 522 HLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLY 581
F VDT++ RI LGWVP E LE+ ++ Y
Sbjct: 358 RPCFAVDTHIFRICKWLGWVPPDKATEITAFGHLEV----------------RIPDHLKY 401
Query: 582 ELHYQMITFGKVFCTKSKPNCNA 604
LH I GK C P C A
Sbjct: 402 SLHQLFIRHGKT-C----PRCRA 419
>gi|312899629|ref|ZP_07758955.1| endonuclease III [Enterococcus faecalis TX0470]
gi|311293308|gb|EFQ71864.1| endonuclease III [Enterococcus faecalis TX0470]
Length = 215
Score = 52.4 bits (124), Expect = 0.001, Method: Composition-based stats.
Identities = 47/170 (27%), Positives = 71/170 (41%), Gaps = 26/170 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
EA+ A V +I + IK G+ A IK +L+ +VP + ++ L+
Sbjct: 63 EALAAAPVEEIIDKIKTIGLYRNKAKNIKACAQQLLERFNG-------EVP--QTRDELV 113
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
S G+G K+ V AF VDT+V R++ RL L ++ L+ P
Sbjct: 114 SLPGVGRKTANVVMGDAFGEPAFAVDTHVERVSKRLRICKLNANVTEVEQTLMRKVP--- 170
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
K LW + H+ MI FG+ C P C ACP+ C+
Sbjct: 171 ---KELWVKT-----------HHTMIFFGRYHCLARAPKCEACPLLYMCQ 206
>gi|325298553|ref|YP_004258470.1| endonuclease III [Bacteroides salanitronis DSM 18170]
gi|324318106|gb|ADY35997.1| endonuclease III [Bacteroides salanitronis DSM 18170]
Length = 214
Score = 52.4 bits (124), Expect = 0.001, Method: Composition-based stats.
Identities = 47/182 (25%), Positives = 75/182 (41%), Gaps = 29/182 (15%)
Query: 433 PEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDH-GSVDLEWLRD 491
P +D EA+ + + I+ N A + LVRD+ G V
Sbjct: 53 PALFRDFPTAEAMAATTPDVVYEYIRSVSYPNNKAKHLVGMAQMLVRDYEGQV------- 105
Query: 492 VPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVP-LQPLPESL 550
PD +E L+ G+G K+ ++ + H A VDT+V R++ R+G VP P +
Sbjct: 106 --PDTLEE-LVKLPGVGRKTANVIQSVVFHKAAMAVDTHVFRVSHRIGLVPGTCTTPLAT 162
Query: 551 QLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGE 610
+ HL P + L P+ H+ +I G+ CT P C+ C + G
Sbjct: 163 EKHLTRYIP------EALIPK-----------AHHWLILHGRYVCTARNPKCDKCGLNGI 205
Query: 611 CR 612
C+
Sbjct: 206 CQ 207
>gi|333384285|ref|ZP_08475925.1| endonuclease III [Dysgonomonas gadei ATCC BAA-286]
gi|332826778|gb|EGJ99595.1| endonuclease III [Dysgonomonas gadei ATCC BAA-286]
Length = 211
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 70/173 (40%), Gaps = 26/173 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
E + + + I + IK N A + +LV D G PD +E L
Sbjct: 63 EVMAVSSTDAIYHYIKSVSYPNNKAKNLLGMAKKLVDDFGGKV--------PDSMEE-LE 113
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
+ G+G K+ + ++ + A PVDT+V R++ R+G PE + L++ P
Sbjct: 114 TIPGVGRKTANVMLIVAFNKPAMPVDTHVFRVSNRIGLTDNSKNPEQTERELIKYIPT-- 171
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFA 615
+ L + H+ +I G+ C KP C C + C+ F+
Sbjct: 172 ---------------KYLSKAHHWLILHGRYICVARKPKCEECGLTPYCKFFS 209
>gi|218530896|ref|YP_002421712.1| endonuclease III FCL domain-containing protein [Methylobacterium
extorquens CM4]
gi|218523199|gb|ACK83784.1| Endonuclease III FCL domain protein [Methylobacterium extorquens
CM4]
Length = 254
Score = 52.0 bits (123), Expect = 0.001, Method: Composition-based stats.
Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 14/172 (8%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
DW + A V +I TI + A RIK L + G++ L++L D+ D+A+ +
Sbjct: 86 DWTEIDAASVKEIEATIHGVTWPELKAPRIKAVLAAVQERVGALSLDFLGDMSVDEARGW 145
Query: 501 LLSFRGLGLK-SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
L + G+G K S + TL A PVD++ R+A R G + ++ + +
Sbjct: 146 LEAIPGIGPKTSAAVLSFSTLRMPALPVDSHHHRVAQRTGLI-------GAKVDVGPSHA 198
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
VL + W + LY+ H ++ G+ C P C C + C
Sbjct: 199 VLRAQLPDDW------SAQKLYDNHEVLMLHGQRVCFHRSPACGRCVLLDIC 244
>gi|296282210|ref|ZP_06860208.1| endonuclease III family protein [Citromicrobium bathyomarinum
JL354]
Length = 235
Score = 52.0 bits (123), Expect = 0.001, Method: Composition-based stats.
Identities = 49/193 (25%), Positives = 74/193 (38%), Gaps = 22/193 (11%)
Query: 428 GKKERPEHTKDSLD--------WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVR 479
G + R E + + D WEAV A + + + + N+ R+K L LV
Sbjct: 48 GARTRSETSNAATDRLLAEYGSWEAVADAPLEALQAQLATQTYPNVAGERLKACLTDLVA 107
Query: 480 DHGSVDLEWLRDVPPDKAKEYLLSFRGLGLK-SVECVRLLTLHHLAFPVDTNVGRIAVRL 538
G+VDL L + D A +L G+G K + V TL A +D++ R+ R+
Sbjct: 108 RRGAVDLSHLEPMETDAAMVWLEQLPGVGRKIAAGVVNTSTLDRKALVLDSHHRRVLQRM 167
Query: 539 GWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKS 598
G VP + ++ P S Y E H M G+ FC +
Sbjct: 168 GLVPQKADTARAYAAIMPAMPSEWSAADY-------------DEHHLLMKEIGRAFCRPA 214
Query: 599 KPNCNACPMRGEC 611
C CP + C
Sbjct: 215 SMACGECPAQALC 227
>gi|225848427|ref|YP_002728590.1| endonuclease III [Sulfurihydrogenibium azorense Az-Fu1]
gi|225644019|gb|ACN99069.1| probable endonuclease III (DNA-(apurinic orapyrimidinic site)
lyase) [Sulfurihydrogenibium azorense Az-Fu1]
Length = 216
Score = 52.0 bits (123), Expect = 0.001, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 19/136 (13%)
Query: 476 RLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIA 535
+ +++ + LE PD ++ LLS +G+G K+ V A VD +V RI+
Sbjct: 93 KTIKEISKIILEKYAGKVPDNLED-LLSLKGVGRKTANLVLSEGYKKPAICVDVHVHRIS 151
Query: 536 VRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFC 595
RLG V + PE + L+E+ P +KY W ++++ ++ FG+ C
Sbjct: 152 NRLGVVKTKT-PEETEFKLMEILP-----KKY-W-----------RDVNWVLVAFGQTIC 193
Query: 596 TKSKPNCNACPMRGEC 611
KP C+ CP++ C
Sbjct: 194 KPIKPMCDICPVKNFC 209
>gi|254168035|ref|ZP_04874883.1| base excision DNA repair protein, HhH-GPD family [Aciduliprofundum
boonei T469]
gi|289596043|ref|YP_003482739.1| DNA-(apurinic or apyrimidinic site) lyase [Aciduliprofundum boonei
T469]
gi|197623078|gb|EDY35645.1| base excision DNA repair protein, HhH-GPD family [Aciduliprofundum
boonei T469]
gi|289533830|gb|ADD08177.1| DNA-(apurinic or apyrimidinic site) lyase [Aciduliprofundum boonei
T469]
Length = 211
Score = 52.0 bits (123), Expect = 0.001, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 19/121 (15%)
Query: 494 PDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 553
PD +E LL G+G K+ V VDT+V RI+ RLGWV + PE +
Sbjct: 104 PDNLEE-LLKLPGVGRKTANIVLSRCYDKDVIAVDTHVHRISNRLGWVNTKT-PEETERE 161
Query: 554 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
L+++ ++KY W + +L ++ FG+ C P C+ CP++ C++
Sbjct: 162 LMKVL-----LKKY-WKDINEL-----------LVMFGRTICRPVAPKCDVCPIKKYCKY 204
Query: 614 F 614
+
Sbjct: 205 Y 205
>gi|448529547|ref|ZP_21620567.1| HhH-GPD family protein [Halorubrum hochstenium ATCC 700873]
gi|445708716|gb|ELZ60554.1| HhH-GPD family protein [Halorubrum hochstenium ATCC 700873]
Length = 232
Score = 52.0 bits (123), Expect = 0.001, Method: Composition-based stats.
Identities = 42/164 (25%), Positives = 68/164 (41%), Gaps = 18/164 (10%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHG-SVDLEWLRDVPPDKAKE 499
D+ A+ AD ++ TI+ G+ + A RI+ L + + G + L +L + D AK
Sbjct: 73 DFAAIEAADHEELRETIRVAGLPDQKAARIQRALTAIREETGGAYSLAFLDAMATDDAKA 132
Query: 500 YLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
+L +G+G K+ V VDT+V R++ R G VP L E P
Sbjct: 133 WLTEIKGVGPKTASVVLNFHFGKPTMAVDTHVERVSKRFGLVPESASNGRAHEVLDEQVP 192
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCN 603
+Y LH +I G+ C+ P+C+
Sbjct: 193 -----------------DELIYPLHVLLIRHGREHCSARNPDCD 219
>gi|358449635|ref|ZP_09160117.1| endonuclease III [Marinobacter manganoxydans MnI7-9]
gi|385331026|ref|YP_005884977.1| endonuclease III [Marinobacter adhaerens HP15]
gi|311694176|gb|ADP97049.1| endonuclease III [Marinobacter adhaerens HP15]
gi|357226157|gb|EHJ04640.1| endonuclease III [Marinobacter manganoxydans MnI7-9]
Length = 212
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 27/169 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
EA+ V+ + IK G+ N A + L+ HG VP + +E L
Sbjct: 62 EAILALGVDGLKEYIKTIGLFNSKAENVIKTCRILIEKHGG-------QVP--ERREDLE 112
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
+ G+G K+ V H+A VDT++ R++ R G P + + E ++ L+ L P
Sbjct: 113 ALPGVGRKTANVVLNTAFGHMAMAVDTHIYRVSNRTGIAPGKNVLE-VENRLMRLVP--- 168
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
+ L + H+ +I G+ CT KP C AC + C
Sbjct: 169 --------------KEFLLDAHHWLILHGRYTCTARKPKCGACIIEDLC 203
>gi|415728037|ref|ZP_11471640.1| Putative EndoIII-related endonuclease [Gardnerella vaginalis
6119V5]
gi|388065563|gb|EIK88045.1| Putative EndoIII-related endonuclease [Gardnerella vaginalis
6119V5]
Length = 223
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 68/165 (41%), Gaps = 22/165 (13%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRD-HGSVDLEWLRDVPPDKAKEYLLSFRG 506
A V ++ + IK G + A I RL HG V P + ++ L S G
Sbjct: 73 ASVEQVESIIKPLGFYRVKAQHIIALSLRLESAFHGVV---------PSRMED-LTSLPG 122
Query: 507 LGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQK 566
+G K+ VR FPVDT+V R+ RLGW P+ Y ESI+K
Sbjct: 123 VGRKTANVVRGNAFGLPGFPVDTHVIRVTGRLGWRKDCNKPKK--------YANPESIEK 174
Query: 567 YLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
+ D L +++I G+ CT P C CP++ C
Sbjct: 175 EI---TSYFDPADWTNLSHRLILHGRKVCTARNPKCALCPLKTTC 216
>gi|332876792|ref|ZP_08444550.1| endonuclease III [Capnocytophaga sp. oral taxon 329 str. F0087]
gi|357047392|ref|ZP_09108999.1| endonuclease III [Paraprevotella clara YIT 11840]
gi|332685351|gb|EGJ58190.1| endonuclease III [Capnocytophaga sp. oral taxon 329 str. F0087]
gi|355529993|gb|EHG99418.1| endonuclease III [Paraprevotella clara YIT 11840]
Length = 222
Score = 52.0 bits (123), Expect = 0.002, Method: Composition-based stats.
Identities = 43/181 (23%), Positives = 74/181 (40%), Gaps = 27/181 (14%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
EA+ A I I+ N A + LV ++ S +VP D + L+
Sbjct: 63 EAMAAATPETIYEYIRSVSYPNNKAKHLVGMARMLVENYHS-------EVPSDL--DELV 113
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVP-LQPLPESLQLHLLELYPVL 561
G+G K+ ++ + A VDT+V R++ R+G VP P S++ L+ +P
Sbjct: 114 KLPGVGRKTANVIQAVVFEKAAMAVDTHVFRVSHRIGLVPDTCTTPYSVEKQLVRYFP-- 171
Query: 562 ESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASS 621
+ + H+ +I G+ CT P C C ++ CRH+ ++
Sbjct: 172 ---------------DPIIPKAHHWLILHGRYTCTARTPKCEVCGLKMICRHYLRTHGAA 216
Query: 622 R 622
R
Sbjct: 217 R 217
>gi|393766633|ref|ZP_10355188.1| helix-hairpin-helix DNA-binding motif-containing protein
[Methylobacterium sp. GXF4]
gi|392727951|gb|EIZ85261.1| helix-hairpin-helix DNA-binding motif-containing protein
[Methylobacterium sp. GXF4]
Length = 253
Score = 52.0 bits (123), Expect = 0.002, Method: Composition-based stats.
Identities = 46/172 (26%), Positives = 78/172 (45%), Gaps = 14/172 (8%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
DWE+V A+V +I I + A RI++ L + GS+DL +L D+ A+ +
Sbjct: 85 DWESVIDAEVPEIQAAIAGVTWPELKAPRIREVLIAVRERCGSLDLAFLGDMDVAAARAW 144
Query: 501 LLSFRGLGLK-SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
L + G+G K S + TL A PVD++ R+A RLG + ++ + +
Sbjct: 145 LEAIPGIGPKTSAAVLSFSTLRMPALPVDSHHHRVAQRLGLI-------GPRVDVGPSHA 197
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
+L + W + LY+ H ++ G+ C +P C C + C
Sbjct: 198 ILRAQLPADW------SAQALYDNHEILMLHGQQVCHHRRPACGRCVLVDLC 243
>gi|386867584|ref|YP_006280578.1| EndoIII-related endonuclease [Bifidobacterium animalis subsp.
animalis ATCC 25527]
gi|385701667|gb|AFI63615.1| Putative EndoIII-related endonuclease [Bifidobacterium animalis
subsp. animalis ATCC 25527]
Length = 247
Score = 52.0 bits (123), Expect = 0.002, Method: Composition-based stats.
Identities = 45/173 (26%), Positives = 71/173 (41%), Gaps = 30/173 (17%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
EA+ A + + + I+ G ++ A I ++V G +VP + E L
Sbjct: 69 EALADARLEDVESIIRPLGFYHVKAEHIIAVARQIVERFGG-------EVP--QTMEELT 119
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRL----GWVPLQPLPESLQLHLLELY 558
S G+G K+ V H FPVDT+V R+ RL W+ PE ++ + +
Sbjct: 120 SLPGVGRKTANVVLGNAFHVPGFPVDTHVIRVTGRLHWRDDWMKANTTPERIEQEITGCF 179
Query: 559 PVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
P E W +L +++I FG+ CT P C CP+ C
Sbjct: 180 PESE------WT-----------DLSHRLIIFGRNICTSRSPECETCPLLPTC 215
>gi|374628503|ref|ZP_09700888.1| endonuclease III [Methanoplanus limicola DSM 2279]
gi|373906616|gb|EHQ34720.1| endonuclease III [Methanoplanus limicola DSM 2279]
Length = 217
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 75/174 (43%), Gaps = 36/174 (20%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
A+++KI I+ G + I+ LVR++ V PD +E L+ G+
Sbjct: 70 AEISKIEEIIRPTGFYRAKSKNIRGASEMLVREYDGV--------VPDSMEE-LIKLPGV 120
Query: 508 GLKSVECVRLLTLHHL-----AFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
G K+ V L+H VDT+V R++ RLG P+ ++ L LYP
Sbjct: 121 GRKTANIV----LNHAYGIDAGIAVDTHVKRVSYRLGMTD-NTDPDKIERDLTALYP--- 172
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFAS 616
Q ++++ +I+ G+ C KP C C ++ CR++++
Sbjct: 173 --------------QEVWGKMNFLLISHGRAVCDAKKPACERCCIKDYCRYYSN 212
>gi|225849644|ref|YP_002729878.1| endonuclease III [Persephonella marina EX-H1]
gi|225645619|gb|ACO03805.1| endonuclease III [Persephonella marina EX-H1]
Length = 213
Score = 52.0 bits (123), Expect = 0.002, Method: Composition-based stats.
Identities = 46/177 (25%), Positives = 73/177 (41%), Gaps = 29/177 (16%)
Query: 437 KDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDK 496
+D +D E V C K+ IK G + + +F R +D+ DK
Sbjct: 59 EDLVDLEKVSCIHEEKLQEIIKPAGFYKRKSRTLIEFSRRF------------KDIEKDK 106
Query: 497 -AKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLL 555
++ LLS +G+G ++ + + L L+ F VD R+ R+G+ + +Q
Sbjct: 107 ITRDLLLSVKGIGKETADSILLYALNRPYFVVDAYTRRVFSRIGFFDKNLSYDEIQ---- 162
Query: 556 ELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
E +K L P D E H ++ GK FC K KP C CP+ C+
Sbjct: 163 ------ELFEKNL-PE----DTDIYKEYHALIVELGKSFCRK-KPLCKDCPLFANCK 207
>gi|410668427|ref|YP_006920798.1| endonuclease [Thermacetogenium phaeum DSM 12270]
gi|409106174|gb|AFV12299.1| putative endonuclease [Thermacetogenium phaeum DSM 12270]
Length = 261
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 67/161 (41%), Gaps = 16/161 (9%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
++A ++ +N A +++ F +V + G +LE + + ++ LL+ G+G ++
Sbjct: 74 ELAALVRPARYHNQKAKKLQSFCRVVVEEFGG-ELEDFLALEMKELRKRLLAVYGIGPET 132
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
+ + L F +D GRI RLG+ + E +Q + P
Sbjct: 133 ADAIILYAAEKPIFVIDAYTGRIFSRLGFFSEKAGYEEMQRFFMTHLPP----------- 181
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
D R E H + G C KS+P C CP+ C+
Sbjct: 182 ----DVRLYNEYHALIDALGHYTCCKSQPRCGECPLEYRCK 218
>gi|331086694|ref|ZP_08335771.1| hypothetical protein HMPREF0987_02074 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330409860|gb|EGG89295.1| hypothetical protein HMPREF0987_02074 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 275
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 482 GSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHL-AFPVDTNV 531
G VDL+ ++ +P KAK+ LL G+G K +C+ L LHHL AFP+DT++
Sbjct: 183 GEVDLDAIQHLPYAKAKKELLKLFGVGEKVADCICLFALHHLQAFPIDTHI 233
>gi|223043195|ref|ZP_03613242.1| endonuclease III [Staphylococcus capitis SK14]
gi|314933636|ref|ZP_07841001.1| endonuclease III [Staphylococcus caprae C87]
gi|417907904|ref|ZP_12551671.1| endonuclease III [Staphylococcus capitis VCU116]
gi|222443406|gb|EEE49504.1| endonuclease III [Staphylococcus capitis SK14]
gi|313653786|gb|EFS17543.1| endonuclease III [Staphylococcus caprae C87]
gi|341594991|gb|EGS37669.1| endonuclease III [Staphylococcus capitis VCU116]
Length = 219
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 18/128 (14%)
Query: 494 PDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 553
P+ KE L S G+G K+ V + + VDT+V R++ RLG + ++
Sbjct: 106 PETHKE-LESLAGVGRKTANVVMSVAFGEPSLAVDTHVERVSKRLGINRWKDNVRQVEDR 164
Query: 554 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
L ++ P + W R H+Q+I FG+ C KP C+ CP+ +CR
Sbjct: 165 LCDIIP------RERWNRS-----------HHQLIFFGRYHCLARKPKCDICPLLDDCRE 207
Query: 614 FASAFASS 621
+ +S
Sbjct: 208 GQKRYKAS 215
>gi|302504713|ref|XP_003014315.1| hypothetical protein ARB_07622 [Arthroderma benhamiae CBS 112371]
gi|291177883|gb|EFE33675.1| hypothetical protein ARB_07622 [Arthroderma benhamiae CBS 112371]
Length = 475
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 73/209 (34%), Gaps = 62/209 (29%)
Query: 437 KDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNR-------------------- 476
K S+DW VR A V I +K G+ + IK L
Sbjct: 236 KGSVDWNKVREAPVEDIYKAMKCGGLGVAKSKYIKQILEMVYEENKARRDALVESKTGKE 295
Query: 477 --LVRDHGSVD-------------------LEWLRDVPPDKAKEYLLSFRGLGLKSVECV 515
L R GS++ L L + D+A + + G+G+K+ CV
Sbjct: 296 IDLTRAPGSINETEEQKDNEITMANENVLSLNHLHSLSKDEAMLEFVKYPGIGVKTAACV 355
Query: 516 RLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKL 575
L L F VDT+V R++ LGW+P + E LE+ K+
Sbjct: 356 ILFCLQRPCFAVDTHVFRLSKWLGWIPPDKVNEITAFSHLEV----------------KI 399
Query: 576 DQRTLYELHYQMITFGKVFCTKSKPNCNA 604
Y LH I GK C P C A
Sbjct: 400 PDHLKYSLHQLFIRHGKA-C----PRCRA 423
>gi|430750009|ref|YP_007212917.1| endonuclease III [Thermobacillus composti KWC4]
gi|430733974|gb|AGA57919.1| endonuclease III [Thermobacillus composti KWC4]
Length = 215
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 80/184 (43%), Gaps = 35/184 (19%)
Query: 429 KKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEW 488
K +RPE D+ AV + ++ I+ G+ A I+ L+ HG
Sbjct: 57 KYKRPE------DYLAV---PIEELEQDIRRIGLYRNKAANIQKLCRMLIEKHGG----- 102
Query: 489 LRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPE 548
+VP D E L+ G+G K+ V A VDT+V R++ RLG P+
Sbjct: 103 --EVPRDY--ESLVELPGVGRKTANVVISNAFGVPAIAVDTHVERVSKRLGIAK----PD 154
Query: 549 SLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMR 608
VLE +K + RL D+ T+ H+++I FG+ C +PNC CP+
Sbjct: 155 D---------SVLEVEKKLM--RLVPRDEWTIT--HHRLIFFGRYHCKAQRPNCPECPLL 201
Query: 609 GECR 612
C+
Sbjct: 202 DLCK 205
>gi|320100933|ref|YP_004176525.1| DNA-(apurinic or apyrimidinic site) lyase [Desulfurococcus mucosus
DSM 2162]
gi|319753285|gb|ADV65043.1| DNA-(apurinic or apyrimidinic site) lyase [Desulfurococcus mucosus
DSM 2162]
Length = 223
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 18/120 (15%)
Query: 495 DKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHL 554
++A+ L+ G+G K+ + V L FPVDT++ RI R+G+ + +
Sbjct: 114 NEARRRLMELPGVGEKTADVVLLRYFGIPVFPVDTHISRITRRMGFTETGRYSDVSSFWM 173
Query: 555 LELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
P W L ELH +IT G+ C KP C+ C +R C+H+
Sbjct: 174 ENTSP---------WNYL---------ELHLYLITHGRRICKARKPLCDECVLRDLCKHY 215
>gi|300088667|ref|YP_003759189.1| HhH-GPD family protein [Dehalogenimonas lykanthroporepellens
BL-DC-9]
gi|299528400|gb|ADJ26868.1| HhH-GPD family protein [Dehalogenimonas lykanthroporepellens
BL-DC-9]
Length = 224
Score = 52.0 bits (123), Expect = 0.002, Method: Composition-based stats.
Identities = 43/171 (25%), Positives = 73/171 (42%), Gaps = 26/171 (15%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
++A I+ G N A ++K + L D+E L+D P + + LL+ G+G ++
Sbjct: 76 ELAPVIRSSGYYNAKASKLKALADWLAGYDD--DIESLKDRDPAEFRRELLAVHGVGPET 133
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
+ + L L F +D R+ RLG VP + + W R
Sbjct: 134 ADSILLYALDVPVFVIDAYTRRLFSRLGIVPPRDTYDE-------------------WQR 174
Query: 572 L--CKLDQRT--LYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAF 618
L L+Q+ E H ++ K C +S+P+C C + GECR+ +
Sbjct: 175 LFETNLEQQAGLFNEYHALIVRHAKEVC-RSRPDCAECCLAGECRYLKRGY 224
>gi|307268732|ref|ZP_07550100.1| endonuclease III [Enterococcus faecalis TX4248]
gi|306514860|gb|EFM83407.1| endonuclease III [Enterococcus faecalis TX4248]
Length = 215
Score = 52.0 bits (123), Expect = 0.002, Method: Composition-based stats.
Identities = 47/170 (27%), Positives = 71/170 (41%), Gaps = 26/170 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
EA+ A V++I IK G+ A IK +L+ +VP + ++ L+
Sbjct: 63 EALAAAPVDEIIAKIKTIGLYRNKAKNIKACAQQLLERFNG-------EVP--QTRDELV 113
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
S G+G K+ V AF VDT+V R++ RL L ++ L+ P
Sbjct: 114 SLPGVGRKTANVVMGDAFGEPAFAVDTHVERVSKRLRICKLNANVTEVEQTLMRKVP--- 170
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
K LW + H+ MI FG+ C P C ACP+ C+
Sbjct: 171 ---KELWVKT-----------HHTMIFFGRYHCLARAPKCEACPLLYMCQ 206
>gi|167044454|gb|ABZ09130.1| putative HhH-GPD superfamily base excision DNA repair protein
[uncultured marine crenarchaeote HF4000_APKG6D9]
Length = 216
Score = 52.0 bits (123), Expect = 0.002, Method: Composition-based stats.
Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 19/127 (14%)
Query: 494 PDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 553
PD + L+ G+G K+ CV + A PVD +V RI+ RLG V + PE +
Sbjct: 109 PDNL-DTLVELPGVGRKTANCVLVYAFEKPAIPVDIHVHRISNRLGLVDTKN-PEETEQE 166
Query: 554 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
L++ P +KY W +++ + +G+ C P C+ C ++ C++
Sbjct: 167 LMKKIP-----KKY-W-----------IDINDTFVMYGQNICKPISPMCDVCKIKKNCKY 209
Query: 614 FASAFAS 620
+ + +AS
Sbjct: 210 YKTKYAS 216
>gi|49078760|gb|AAT49817.1| PA3495, partial [synthetic construct]
Length = 213
Score = 52.0 bits (123), Expect = 0.002, Method: Composition-based stats.
Identities = 43/171 (25%), Positives = 71/171 (41%), Gaps = 27/171 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
EA+ V ++ IK G+ N A + + L+ HG VP ++ E L
Sbjct: 62 EAIHALGVEGLSEYIKTIGLYNSKAKNVIETCRILIEKHGG-------QVPDNR--EDLE 112
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
+ G+G K+ V LA VDT++ R+A R G P + + E ++ LL+ P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQLAMAVDTHIFRVANRTGIAPGKNVLE-VEKKLLKFVP--- 168
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
+ L + H+ +I G+ C KP C +C + C +
Sbjct: 169 --------------REYLLDAHHWLILHGRYVCKARKPQCGSCRIEDLCEY 205
>gi|407461561|ref|YP_006772878.1| DNA-(apurinic or apyrimidinic site) lyase [Candidatus
Nitrosopumilus koreensis AR1]
gi|407045183|gb|AFS79936.1| DNA-(apurinic or apyrimidinic site) lyase [Candidatus
Nitrosopumilus koreensis AR1]
Length = 215
Score = 52.0 bits (123), Expect = 0.002, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 20/141 (14%)
Query: 476 RLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIA 535
R++ +D ++ VP D E L+ G+G K+ CV + A PVD +V RI+
Sbjct: 92 RIIEVAKIIDSKYKGKVPEDL--ETLVELPGVGRKTANCVLVYAFEKPAIPVDIHVHRIS 149
Query: 536 VRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFC 595
R+G V + PE + L++ K+D++ +++ + +G+ C
Sbjct: 150 NRIGLVDTKN-PEETEQELMK-----------------KIDKKFWIDINDTFVMYGQNIC 191
Query: 596 TKSKPNCNACPMRGECRHFAS 616
P C+ C ++ C+ + S
Sbjct: 192 KPISPMCDVCKIKRNCKFYKS 212
>gi|51893925|ref|YP_076616.1| endonuclease III [Symbiobacterium thermophilum IAM 14863]
gi|51857614|dbj|BAD41772.1| endonuclease III [Symbiobacterium thermophilum IAM 14863]
Length = 235
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 77/198 (38%), Gaps = 34/198 (17%)
Query: 450 VNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGL 509
V++I I++ G+ A I+ L+ HG +VP E L+ G+G
Sbjct: 71 VDEIGEMIRDCGLWKSKAKNIQGLSQMLLEKHGG-------EVP--STMEELIQLPGVGR 121
Query: 510 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 569
K+ V A VDT+V R+A RLG + PE + L+E P + W
Sbjct: 122 KTANVVLSNAFGIPAIAVDTHVFRVANRLGLAEAKT-PEETERQLMERIP------REYW 174
Query: 570 PRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPE 629
+ H+ +I G+ C P C+ CP+ CR R A G
Sbjct: 175 S-----------QAHHWLIYHGRQVCHARNPQCSQCPLLPHCRF-------GRQAGKGSV 216
Query: 630 EKAIVSANENRTNTQNPA 647
++A VS+ PA
Sbjct: 217 QRARVSSGRAARRAGGPA 234
>gi|448446559|ref|ZP_21590781.1| HhH-GPD family protein [Halorubrum saccharovorum DSM 1137]
gi|445683703|gb|ELZ36093.1| HhH-GPD family protein [Halorubrum saccharovorum DSM 1137]
Length = 232
Score = 52.0 bits (123), Expect = 0.002, Method: Composition-based stats.
Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 20/176 (11%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHG-SVDLEWLRDVPPDKAKE 499
D+ A+ AD ++ TI+ G+ + A RI+ L + + G + L +L + D AK
Sbjct: 73 DFAAIEAADHEELRETIRVAGLADQKAARIQRALAAIREETGGAYSLAFLDAMATDDAKA 132
Query: 500 YLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
+L +G+G K+ V VDT+V R++ R G VP ++ L L P
Sbjct: 133 WLTEIKGVGPKTASVVLNFHFGKPTMAVDTHVERVSKRFGLVPESASNQAAHDALDALVP 192
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCN--ACPMRGECRH 613
D+ T Y LH +I G+ C+ +C+ C +C +
Sbjct: 193 ----------------DELT-YPLHVLLIRHGREHCSARGADCDNPVCEAYCDCEY 231
>gi|355640219|ref|ZP_09051638.1| endonuclease III [Pseudomonas sp. 2_1_26]
gi|354831431|gb|EHF15446.1| endonuclease III [Pseudomonas sp. 2_1_26]
Length = 212
Score = 51.6 bits (122), Expect = 0.002, Method: Composition-based stats.
Identities = 43/171 (25%), Positives = 71/171 (41%), Gaps = 27/171 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
EA+ V ++ IK G+ N A + + L+ HG VP ++ E L
Sbjct: 62 EAIHALGVEGLSEYIKTIGLYNSKAKNVIETCRILIEKHGG-------QVPDNR--EDLE 112
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
+ G+G K+ V LA VDT++ R+A R G P + + E ++ LL+ P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQLAMAVDTHIFRVANRTGIAPGKNVLE-VEKKLLKFVP--- 168
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
+ L + H+ +I G+ C KP C +C + C +
Sbjct: 169 --------------REYLLDAHHWLILHGRYVCKARKPQCGSCRIEDLCEY 205
>gi|326469311|gb|EGD93320.1| HhH-GPD family base excision DNA repair protein [Trichophyton
tonsurans CBS 112818]
gi|326483423|gb|EGE07433.1| HhH-GPD superfamily base excision DNA repair protein [Trichophyton
equinum CBS 127.97]
Length = 478
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 73/209 (34%), Gaps = 62/209 (29%)
Query: 437 KDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNR-------------------- 476
K S+DW VR A V I +K G+ + IK L
Sbjct: 236 KGSVDWNKVREAPVEDIYEAMKCGGLGVAKSKYIKQILEMVYEENKARRDALIESKTGKN 295
Query: 477 --LVRDHGSVD-------------------LEWLRDVPPDKAKEYLLSFRGLGLKSVECV 515
L R GS++ L L + D+A + + G+G+K+ CV
Sbjct: 296 LDLTRAPGSINETEEQKDNEIAMTNEHVLSLNHLHSLSKDEAMLEFVKYPGIGVKTAACV 355
Query: 516 RLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKL 575
L L F VDT+V R++ LGW+P + E LE+ K+
Sbjct: 356 VLFCLQRPCFAVDTHVFRLSKWLGWIPPDKVNEITAFSHLEV----------------KI 399
Query: 576 DQRTLYELHYQMITFGKVFCTKSKPNCNA 604
Y LH I GK C P C A
Sbjct: 400 PDHLKYSLHQLFIRHGKA-C----PRCRA 423
>gi|224541854|ref|ZP_03682393.1| hypothetical protein CATMIT_01026 [Catenibacterium mitsuokai DSM
15897]
gi|224525204|gb|EEF94309.1| endonuclease III [Catenibacterium mitsuokai DSM 15897]
Length = 211
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 17/112 (15%)
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
L+S G+G K+ V + A VDT+V RI+ RLG+ PE L + + +
Sbjct: 111 LISLPGVGRKTANVVMAEGFGYPAIAVDTHVERISKRLGFAK----PEDTVLTVEK--KL 164
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
+++I K W + H+QMI FG+ C P+C CP+ C+
Sbjct: 165 MKTIPKNRWIKT-----------HHQMIFFGRYHCKAMSPHCKECPLVDICK 205
>gi|452976633|gb|EME76448.1| endonuclease III [Bacillus sonorensis L12]
Length = 220
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 73/177 (41%), Gaps = 26/177 (14%)
Query: 450 VNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGL 509
+ ++ IK G+ A I+ L+ ++G +VP D+ + L+ G+G
Sbjct: 70 LEELQQDIKSIGLYRNKAKNIQKLCKMLIEEYGG-------EVPRDR--DELVKLPGVGR 120
Query: 510 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 569
K+ V + A VDT+V R++ RLG+ + ++ L++ P E W
Sbjct: 121 KTANVVVSVAFGVPAIAVDTHVERVSKRLGFCRWKDSVTEVEKTLMKKIPESE------W 174
Query: 570 PRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALP 626
H+++I FG+ C +P C CP+ CR + + LP
Sbjct: 175 S-----------ATHHRLIFFGRYHCKAQRPKCEECPLFSLCREGQKRYKKGLVKLP 220
>gi|397906310|ref|ZP_10507123.1| Endonuclease III [Caloramator australicus RC3]
gi|397160659|emb|CCJ34460.1| Endonuclease III [Caloramator australicus RC3]
Length = 208
Score = 51.6 bits (122), Expect = 0.002, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 19/122 (15%)
Query: 494 PDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 553
P+K ++ L+ G+G K+ V A VDT+V R+A RLG L + LQ
Sbjct: 103 PNKMED-LIKLPGVGRKTANVVLSNAFGKDAIAVDTHVFRVANRLG---LANAKDVLQTE 158
Query: 554 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
++E+I K W R H+ +I G+ CT KP C+ C +R C++
Sbjct: 159 ----KQLMENIPKSYWSRA-----------HHWLIWHGRKICTARKPKCDLCKLRDFCKY 203
Query: 614 FA 615
FA
Sbjct: 204 FA 205
>gi|389817685|ref|ZP_10208278.1| endonuclease III [Planococcus antarcticus DSM 14505]
gi|388464453|gb|EIM06784.1| endonuclease III [Planococcus antarcticus DSM 14505]
Length = 226
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 71/163 (43%), Gaps = 26/163 (15%)
Query: 450 VNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGL 509
+ ++ I+ G+ A I+ L+ + G + VP D+ + L++ G+G
Sbjct: 70 LEELQQDIRSIGLFRNKAKNIQALSRILIDEQGGI-------VPADR--DLLMTLPGVGR 120
Query: 510 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 569
K+ V + A VDT+V R+A RLG + P ++ +++ P + W
Sbjct: 121 KTANVVVSVAFGIPALAVDTHVERVAKRLGLNRWKDNPLQVEETIMKKTPADD------W 174
Query: 570 PRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
+ H+Q+I FG+ C KP C+ CP+ CR
Sbjct: 175 SKT-----------HHQIIFFGRYHCKSQKPGCHICPLFDRCR 206
>gi|225850162|ref|YP_002730396.1| endonuclease III (DNA-(apurinic orapyrimidinic site) lyase)
[Persephonella marina EX-H1]
gi|225646537|gb|ACO04723.1| probable endonuclease III (DNA-(apurinic orapyrimidinic site)
lyase) [Persephonella marina EX-H1]
Length = 219
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 67/160 (41%), Gaps = 27/160 (16%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
KIA I G A IK+ ++V+D G PD E LL +G+G K+
Sbjct: 78 KIAEAIYPAGFYRNKAKVIKEISGKIVKDFGGK--------VPDSIDE-LLKLKGVGRKT 128
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
V L A VDT+V RI+ RLG+V + E+ ++ L + P + W
Sbjct: 129 ANLVVALGYGKPAICVDTHVHRISNRLGFVKTKTAEET-EMALRKKVP------REYWN- 180
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
E++ + FG+ C P C+ CP+ C
Sbjct: 181 ----------EINDLFVAFGQTICKPVSPKCSECPVSSYC 210
>gi|340345847|ref|ZP_08668979.1| DNA-(Apurinic or apyrimidinic site) lyase [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339520988|gb|EGP94711.1| DNA-(Apurinic or apyrimidinic site) lyase [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 217
Score = 51.6 bits (122), Expect = 0.002, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 19/123 (15%)
Query: 492 VPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQ 551
+ PD E L+ G+G K+ CV + A PVD +V RI+ RLG V + PE +
Sbjct: 109 IVPDTLDE-LIQLPGVGRKTANCVLVYAFDKPAIPVDIHVHRISNRLGLVNTKS-PEETE 166
Query: 552 LHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
L L++ P +KY W +++ + +G+ C P CN C ++ C
Sbjct: 167 LVLMKKIP-----KKY-W-----------IKINDTFVMYGQNICKPINPMCNVCKIKKNC 209
Query: 612 RHF 614
+++
Sbjct: 210 KYY 212
>gi|315640880|ref|ZP_07895977.1| endonuclease III [Enterococcus italicus DSM 15952]
gi|315483358|gb|EFU73857.1| endonuclease III [Enterococcus italicus DSM 15952]
Length = 215
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 73/166 (43%), Gaps = 28/166 (16%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
A VN+I IK G+ A I+ +L+ + VP ++E L+S G+
Sbjct: 68 ASVNEIIPYIKSIGLFRNKAKNIQLCSQQLIATYDG-------QVPA--SREELMSLAGV 118
Query: 508 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY-PVLESIQK 566
G K+ V A VDT+V RI+ RL L +++E+ +++ I +
Sbjct: 119 GRKTANVVLGDAFGVPAIAVDTHVERISKRLRICKLTA-------NVIEVEETLMKKIPE 171
Query: 567 YLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
LW R H+ MI FG+ CT KPNC CP+ C+
Sbjct: 172 NLWIRA-----------HHTMIFFGRYHCTARKPNCAQCPLLDMCQ 206
>gi|283782700|ref|YP_003373454.1| endonuclease III [Gardnerella vaginalis 409-05]
gi|298253131|ref|ZP_06976923.1| EndoIII-like endonuclease [Gardnerella vaginalis 5-1]
gi|283442104|gb|ADB14570.1| endonuclease III [Gardnerella vaginalis 409-05]
gi|297532526|gb|EFH71412.1| EndoIII-like endonuclease [Gardnerella vaginalis 5-1]
Length = 224
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 48/113 (42%), Gaps = 15/113 (13%)
Query: 499 EYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY 558
E L+S G+G K+ V FPVDT+V R+ RLGW +Q P + +
Sbjct: 122 EALISLPGVGRKTANVVLGNAFGLPGFPVDTHVIRVTGRLGWRKVQNRPNPVAIE----- 176
Query: 559 PVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
I Y P + L +++I G+ CT P C +CP+ C
Sbjct: 177 ---REITAYFAP-------KEWTNLSHRLILHGRKICTARNPKCVSCPLNTTC 219
>gi|82596217|ref|XP_726170.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23481466|gb|EAA17735.1| Drosophila melanogaster CG9272 gene product [Plasmodium yoelii
yoelii]
Length = 386
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 21/130 (16%)
Query: 491 DVPPDKAKEYLLSFRGLGLKSVECVRLLTLH-HLAFPVDTNVGRIAVRLGWVPLQPLPES 549
D+P + E L+ G+G K + + L+ H VD +V RI+ RL WV + ++
Sbjct: 265 DIPHNY--EELIKLPGIGEKVSQLILQTALNKHEGIAVDIHVHRISNRLNWVYTKNEADT 322
Query: 550 LQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRG 609
Q+ L + K LW EL++ ++ FG+V C KP C C +
Sbjct: 323 -QIKLKSF------VDKELWS-----------ELNHLLVGFGQVICKGKKPLCEKCTLTD 364
Query: 610 ECRHFASAFA 619
C+++ F
Sbjct: 365 YCQYYNDNFV 374
>gi|302654297|ref|XP_003018956.1| hypothetical protein TRV_06967 [Trichophyton verrucosum HKI 0517]
gi|291182646|gb|EFE38311.1| hypothetical protein TRV_06967 [Trichophyton verrucosum HKI 0517]
Length = 473
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 73/209 (34%), Gaps = 62/209 (29%)
Query: 437 KDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNR-------------------- 476
K S+DW VR A V I +K G+ + IK L
Sbjct: 236 KGSVDWNKVREAPVEDIYEAMKCGGLGVAKSKYIKQILEMVYEENKARRDALVESKTGRE 295
Query: 477 --LVRDHGSVD-------------------LEWLRDVPPDKAKEYLLSFRGLGLKSVECV 515
L R GS++ L L + D+A + + G+G+K+ CV
Sbjct: 296 IDLTRAPGSINETEEQKDNEIAMANENVLSLNHLHSLSKDEAMLEFVKYPGIGVKTAACV 355
Query: 516 RLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKL 575
L L F VDT++ R++ LGW+P + E LE+ K+
Sbjct: 356 VLFCLQRPCFAVDTHIFRLSKWLGWIPSDKVNEITAFSHLEV----------------KI 399
Query: 576 DQRTLYELHYQMITFGKVFCTKSKPNCNA 604
Y LH I GK C P C A
Sbjct: 400 PDHLKYSLHQLFIRHGKA-C----PRCRA 423
>gi|218782481|ref|YP_002433799.1| endonuclease III [Desulfatibacillum alkenivorans AK-01]
gi|218763865|gb|ACL06331.1| endonuclease III [Desulfatibacillum alkenivorans AK-01]
Length = 210
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 70/163 (42%), Gaps = 27/163 (16%)
Query: 450 VNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGL 509
+ ++ I G + A R+K+ L+ HG V VP D E LL+ G+G
Sbjct: 71 LKELEELIHATGFFHTKAKRVKECAAALMEKHGGV-------VPRDM--ESLLALPGVGR 121
Query: 510 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 569
K+ V VDT+V RI+ RLG+ + P ++ L++L P K W
Sbjct: 122 KTANVVLNAAFEIPGIVVDTHVQRISQRLGFTKFKD-PVKIEFDLMKLLP------KESW 174
Query: 570 PRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
+D + LH +I G+ CT KP C C + C+
Sbjct: 175 -----ID----FSLH--LIYHGRAVCTARKPKCGECTLAEWCK 206
>gi|357054857|ref|ZP_09115936.1| endonuclease III [Clostridium clostridioforme 2_1_49FAA]
gi|355383794|gb|EHG30869.1| endonuclease III [Clostridium clostridioforme 2_1_49FAA]
Length = 231
Score = 51.6 bits (122), Expect = 0.002, Method: Composition-based stats.
Identities = 45/169 (26%), Positives = 72/169 (42%), Gaps = 27/169 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
E AD+ ++ I G +M A I LV G +VP K+ + L
Sbjct: 85 EKFAMADLKELEQDIHSIGFYHMKAKNIIACCRDLVERFGG-------EVP--KSIDELT 135
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
S G+G K+ +R + + VDT+V RI+ +LG + PE ++ L+++ P
Sbjct: 136 SLAGVGRKTANVIRGNIYNEPSIVVDTHVKRISRKLGLTKEED-PEKIEYALMKVLPK-- 192
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
D L+ +H +IT G+ C +P C C +R EC
Sbjct: 193 -------------DHWILWNIH--IITLGRTICVARRPKCCECFLREEC 226
>gi|139438722|ref|ZP_01772206.1| Hypothetical protein COLAER_01208 [Collinsella aerofaciens ATCC
25986]
gi|133775802|gb|EBA39622.1| endonuclease III [Collinsella aerofaciens ATCC 25986]
Length = 221
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 74/172 (43%), Gaps = 29/172 (16%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
EA+ A V +A+TIK G A + +V D+G +VP D + L+
Sbjct: 69 EAMAGASVADVADTIKSLGFYKSKAKHAVEAAQMIVADYGG-------EVPADMKE--LV 119
Query: 503 SFRGLGLKSVECVRLLTLHHL-AFPVDTNVGRIAVRLGWVPLQPLPESLQLH--LLELYP 559
G+G K+ V + + VDT+V RIA RL P E L+ LL++ P
Sbjct: 120 KLPGVGRKTANIVLNVGYGIVEGIAVDTHVNRIAHRLMLSPKTHAKEPLKTEQDLLKILP 179
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
+Y W +++Q ITFG+ C KP C+ CP+ C
Sbjct: 180 -----HEY-WE-----------SVNHQWITFGREICDARKPKCDECPLADLC 214
>gi|189423447|ref|YP_001950624.1| HhH-GPD family protein [Geobacter lovleyi SZ]
gi|189419706|gb|ACD94104.1| HhH-GPD family protein [Geobacter lovleyi SZ]
Length = 225
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 75/161 (46%), Gaps = 19/161 (11%)
Query: 457 IKERGMNNMLAGRIKDFLNRLVRDH-GSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECV 515
I+ G N+ A R++ F L + + GS+D L P + + LL+ +G+G ++ + +
Sbjct: 76 IRPAGYFNVKAVRLQAFTTFLQQQYQGSLDR--LFAAPWQQTRTELLAVKGIGPETADSI 133
Query: 516 RLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKL 575
L H +F VD RI RLG V + + L+ H ++ RL L
Sbjct: 134 LLYAGHKPSFVVDAYTRRIFSRLGLVDERISYDGLRRHFMD--------------RL-TL 178
Query: 576 DQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFAS 616
D E H ++ GK C + +P C++C + +C + A+
Sbjct: 179 DTALFNEYHALLVELGKQAC-RPRPQCSSCCLAAQCSYNAT 218
>gi|15598691|ref|NP_252185.1| endonuclease III [Pseudomonas aeruginosa PAO1]
gi|107103025|ref|ZP_01366943.1| hypothetical protein PaerPA_01004094 [Pseudomonas aeruginosa PACS2]
gi|116051512|ref|YP_789652.1| endonuclease III [Pseudomonas aeruginosa UCBPP-PA14]
gi|218890260|ref|YP_002439124.1| endonuclease III [Pseudomonas aeruginosa LESB58]
gi|254236439|ref|ZP_04929762.1| endonuclease III [Pseudomonas aeruginosa C3719]
gi|254242175|ref|ZP_04935497.1| endonuclease III [Pseudomonas aeruginosa 2192]
gi|296387984|ref|ZP_06877459.1| endonuclease III [Pseudomonas aeruginosa PAb1]
gi|313108859|ref|ZP_07794842.1| endonuclease III [Pseudomonas aeruginosa 39016]
gi|386057540|ref|YP_005974062.1| endonuclease III [Pseudomonas aeruginosa M18]
gi|386067541|ref|YP_005982845.1| endonuclease III [Pseudomonas aeruginosa NCGM2.S1]
gi|392982768|ref|YP_006481355.1| endonuclease III [Pseudomonas aeruginosa DK2]
gi|416867830|ref|ZP_11916116.1| endonuclease III [Pseudomonas aeruginosa 138244]
gi|416875861|ref|ZP_11918934.1| endonuclease III [Pseudomonas aeruginosa 152504]
gi|418584272|ref|ZP_13148336.1| endonuclease III [Pseudomonas aeruginosa MPAO1/P1]
gi|418591842|ref|ZP_13155728.1| endonuclease III [Pseudomonas aeruginosa MPAO1/P2]
gi|419754900|ref|ZP_14281258.1| endonuclease III [Pseudomonas aeruginosa PADK2_CF510]
gi|420138609|ref|ZP_14646508.1| endonuclease III [Pseudomonas aeruginosa CIG1]
gi|421152679|ref|ZP_15612257.1| endonuclease III [Pseudomonas aeruginosa ATCC 14886]
gi|421158996|ref|ZP_15618178.1| endonuclease III [Pseudomonas aeruginosa ATCC 25324]
gi|421166302|ref|ZP_15624564.1| endonuclease III [Pseudomonas aeruginosa ATCC 700888]
gi|421173249|ref|ZP_15631001.1| endonuclease III [Pseudomonas aeruginosa CI27]
gi|421179340|ref|ZP_15636932.1| endonuclease III [Pseudomonas aeruginosa E2]
gi|421518036|ref|ZP_15964710.1| endonuclease III [Pseudomonas aeruginosa PAO579]
gi|424939679|ref|ZP_18355442.1| endonuclease III [Pseudomonas aeruginosa NCMG1179]
gi|451987559|ref|ZP_21935715.1| Endonuclease III [Pseudomonas aeruginosa 18A]
gi|9949641|gb|AAG06883.1|AE004770_8 endonuclease III [Pseudomonas aeruginosa PAO1]
gi|115586733|gb|ABJ12748.1| endonuclease III [Pseudomonas aeruginosa UCBPP-PA14]
gi|126168370|gb|EAZ53881.1| endonuclease III [Pseudomonas aeruginosa C3719]
gi|126195553|gb|EAZ59616.1| endonuclease III [Pseudomonas aeruginosa 2192]
gi|218770483|emb|CAW26248.1| endonuclease III [Pseudomonas aeruginosa LESB58]
gi|310881344|gb|EFQ39938.1| endonuclease III [Pseudomonas aeruginosa 39016]
gi|334833542|gb|EGM12621.1| endonuclease III [Pseudomonas aeruginosa 138244]
gi|334841489|gb|EGM20117.1| endonuclease III [Pseudomonas aeruginosa 152504]
gi|346056125|dbj|GAA16008.1| endonuclease III [Pseudomonas aeruginosa NCMG1179]
gi|347303846|gb|AEO73960.1| endonuclease III [Pseudomonas aeruginosa M18]
gi|348036100|dbj|BAK91460.1| endonuclease III [Pseudomonas aeruginosa NCGM2.S1]
gi|375046119|gb|EHS38687.1| endonuclease III [Pseudomonas aeruginosa MPAO1/P1]
gi|375049324|gb|EHS41825.1| endonuclease III [Pseudomonas aeruginosa MPAO1/P2]
gi|384398718|gb|EIE45123.1| endonuclease III [Pseudomonas aeruginosa PADK2_CF510]
gi|392318273|gb|AFM63653.1| endonuclease III [Pseudomonas aeruginosa DK2]
gi|403248618|gb|EJY62175.1| endonuclease III [Pseudomonas aeruginosa CIG1]
gi|404347518|gb|EJZ73867.1| endonuclease III [Pseudomonas aeruginosa PAO579]
gi|404524991|gb|EKA35279.1| endonuclease III [Pseudomonas aeruginosa ATCC 14886]
gi|404536198|gb|EKA45844.1| endonuclease III [Pseudomonas aeruginosa CI27]
gi|404538732|gb|EKA48254.1| endonuclease III [Pseudomonas aeruginosa ATCC 700888]
gi|404547208|gb|EKA56220.1| endonuclease III [Pseudomonas aeruginosa E2]
gi|404548847|gb|EKA57786.1| endonuclease III [Pseudomonas aeruginosa ATCC 25324]
gi|451754792|emb|CCQ88238.1| Endonuclease III [Pseudomonas aeruginosa 18A]
gi|453047484|gb|EME95198.1| endonuclease III [Pseudomonas aeruginosa PA21_ST175]
Length = 212
Score = 51.6 bits (122), Expect = 0.002, Method: Composition-based stats.
Identities = 43/171 (25%), Positives = 71/171 (41%), Gaps = 27/171 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
EA+ V ++ IK G+ N A + + L+ HG VP ++ E L
Sbjct: 62 EAIHALGVEGLSEYIKTIGLYNSKAKNVIETCRILIEKHGG-------QVPDNR--EDLE 112
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
+ G+G K+ V LA VDT++ R+A R G P + + E ++ LL+ P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQLAMAVDTHIFRVANRTGIAPGKNVLE-VEKKLLKFVP--- 168
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
+ L + H+ +I G+ C KP C +C + C +
Sbjct: 169 --------------REYLLDAHHWLILHGRYVCKARKPQCGSCRIEDLCEY 205
>gi|365830798|ref|ZP_09372361.1| endonuclease III [Coprobacillus sp. 3_3_56FAA]
gi|374627265|ref|ZP_09699672.1| endonuclease III [Coprobacillus sp. 8_2_54BFAA]
gi|365262808|gb|EHM92680.1| endonuclease III [Coprobacillus sp. 3_3_56FAA]
gi|373913288|gb|EHQ45126.1| endonuclease III [Coprobacillus sp. 8_2_54BFAA]
Length = 213
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 72/170 (42%), Gaps = 26/170 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
EAV A + ++ IK G+ A N L H V +E + P K+ L
Sbjct: 62 EAVSQASLPELEQDIKTIGLYRNKAK------NLLALSH--VLIEQFDGIVPSDQKQ-LE 112
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
S G+G K+ VR + AF VDT+V RI+ RLG+ +++ L
Sbjct: 113 SLPGVGRKTANVVRSVAFDIPAFAVDTHVERISKRLGFAKRDDNVLTVEKKLCR------ 166
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
SI + W + H+Q I FG+ FC + P+C C + C+
Sbjct: 167 SIPRNRWNKS-----------HHQFIFFGRYFCKATNPSCTECKLVDMCK 205
>gi|307288541|ref|ZP_07568525.1| endonuclease III [Enterococcus faecalis TX0109]
gi|422703006|ref|ZP_16760834.1| endonuclease III [Enterococcus faecalis TX1302]
gi|306500448|gb|EFM69781.1| endonuclease III [Enterococcus faecalis TX0109]
gi|315165565|gb|EFU09582.1| endonuclease III [Enterococcus faecalis TX1302]
Length = 215
Score = 51.6 bits (122), Expect = 0.002, Method: Composition-based stats.
Identities = 47/170 (27%), Positives = 70/170 (41%), Gaps = 26/170 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
EA+ A V +I IK G+ A IK +L+ +VP + ++ L+
Sbjct: 63 EALAAAPVEEIIAKIKTIGLYRNKAKNIKACAQQLLERFNG-------EVP--QTRDELV 113
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
S G+G K+ V AF VDT+V R++ RL L ++ L+ P
Sbjct: 114 SLPGVGRKTANVVMGDAFGEPAFAVDTHVERVSKRLRICKLNANVTEVEQTLMRKVP--- 170
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
K LW + H+ MI FG+ C P C ACP+ C+
Sbjct: 171 ---KELWVKT-----------HHTMILFGRYHCLARAPKCEACPLLYMCQ 206
>gi|160937835|ref|ZP_02085194.1| hypothetical protein CLOBOL_02727 [Clostridium bolteae ATCC
BAA-613]
gi|158439274|gb|EDP17027.1| hypothetical protein CLOBOL_02727 [Clostridium bolteae ATCC
BAA-613]
Length = 273
Score = 51.6 bits (122), Expect = 0.002, Method: Composition-based stats.
Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 27/169 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
E AD+ ++ I G +M A I LV G +VP + E L
Sbjct: 127 EKFAAADLKELEQDIHSIGFYHMKAKNIIACCRDLVERFGG-------EVP--RTIEELT 177
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
S G+G K+ +R + + VDT+V RI+ +LG + PE ++ L+++ P
Sbjct: 178 SLAGVGRKTANVIRGNIYNEPSIVVDTHVKRISRKLGLTKEEE-PEKIEYDLMKVLPK-- 234
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
D L+ +H +IT G+ C +P C C +R EC
Sbjct: 235 -------------DHWILWNIH--IITLGRTICIARRPKCCECFLREEC 268
>gi|167754535|ref|ZP_02426662.1| hypothetical protein CLORAM_00037 [Clostridium ramosum DSM 1402]
gi|237733826|ref|ZP_04564307.1| conserved hypothetical protein [Mollicutes bacterium D7]
gi|167705367|gb|EDS19946.1| endonuclease III [Clostridium ramosum DSM 1402]
gi|229383164|gb|EEO33255.1| conserved hypothetical protein [Coprobacillus sp. D7]
Length = 220
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 72/170 (42%), Gaps = 26/170 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
EAV A + ++ IK G+ A N L H V +E + P K+ L
Sbjct: 69 EAVSQASLPELEQDIKTIGLYRNKAK------NLLALSH--VLIEQFDGIVPSDQKQ-LE 119
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
S G+G K+ VR + AF VDT+V RI+ RLG+ +++ L
Sbjct: 120 SLPGVGRKTANVVRSVAFDIPAFAVDTHVERISKRLGFAKRDDNVLTVEKKLCR------ 173
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
SI + W + H+Q I FG+ FC + P+C C + C+
Sbjct: 174 SIPRNRWNKS-----------HHQFIFFGRYFCKATNPSCTECKLFDMCK 212
>gi|259501844|ref|ZP_05744746.1| endonuclease III [Lactobacillus antri DSM 16041]
gi|259170169|gb|EEW54664.1| endonuclease III [Lactobacillus antri DSM 16041]
Length = 213
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 71/171 (41%), Gaps = 29/171 (16%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
D A ADV IK G+ + A + + +LV D V P KE
Sbjct: 64 DLAAAEPADVEPY---IKRLGLYHNKAKYLVNCARKLVTDFNGVV--------PQTLKE- 111
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
L S G+G K + V AFPVDT+V R+A RL VP + +++ L+E P
Sbjct: 112 LTSLPGVGRKVADVVLAECFAIPAFPVDTHVSRVARRLAMVPPKASLLTIEKKLMEAVPR 171
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
K+L + H+ MI +G+ C P C+ CP+ C
Sbjct: 172 ----DKWL-------------DAHHSMIFWGRYRCMARNPRCSDCPLLPMC 205
>gi|296242399|ref|YP_003649886.1| HhH-GPD family protein [Thermosphaera aggregans DSM 11486]
gi|296094983|gb|ADG90934.1| HhH-GPD family protein [Thermosphaera aggregans DSM 11486]
Length = 230
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 57/141 (40%), Gaps = 26/141 (18%)
Query: 473 FLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVG 532
F +L+R+ D+E R + L+ G+G K+ + V L+ FPVDT++
Sbjct: 106 FEEKLIREVEKNDVEASRKI--------LMRLPGVGPKTADVVLLVFFGKPVFPVDTHIR 157
Query: 533 RIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGK 592
RI RLG+V E I + W Q LH +I G+
Sbjct: 158 RITKRLGYVKKDNYYE---------------ISNF-WA--SNTSQTNYMSLHLLLIAHGR 199
Query: 593 VFCTKSKPNCNACPMRGECRH 613
C KP C CP+ G C H
Sbjct: 200 RTCRALKPFCETCPINGFCEH 220
>gi|355670657|ref|ZP_09057404.1| hypothetical protein HMPREF9469_00441 [Clostridium citroniae
WAL-17108]
gi|354816094|gb|EHF00683.1| hypothetical protein HMPREF9469_00441 [Clostridium citroniae
WAL-17108]
Length = 301
Score = 51.6 bits (122), Expect = 0.002, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 473 FLNRLVRD--HGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHL-AFPVDT 529
+++RL +D G++DL+ L + ++A EYL F G+G K CV L LHH+ AFPVDT
Sbjct: 183 YIHRLCQDAVSGALDLKGLAQMGYEEAMEYLTGFYGIGKKVANCVCLFGLHHISAFPVDT 242
Query: 530 NVGRI 534
+ +I
Sbjct: 243 WIEKI 247
>gi|426200731|gb|EKV50655.1| hypothetical protein AGABI2DRAFT_217472 [Agaricus bisporus var.
bisporus H97]
Length = 249
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 86/190 (45%), Gaps = 36/190 (18%)
Query: 439 SLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAK 498
+L +A+ A+ + ++ I + G AG IK RL+ D S DVP K
Sbjct: 60 TLSIDAIVSAEESTVSAAINKVGFWRRKAGYIKQTAQRLLHDFDS-------DVP--KTV 110
Query: 499 EYLLSFRGLGLKSVECVRLLTLH-----HLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 553
+ L S G+G K + +L LH + VD++V RI LGW +P + +
Sbjct: 111 KELCSLPGVGPK----MAILALHVAWDINTGIGVDSHVHRITNLLGWHN-KPTKSAEETR 165
Query: 554 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPM--RGEC 611
L S+Q +L + E++ ++ FG+V C +KP+C+ C + RG C
Sbjct: 166 L--------SLQSWLPAEFHR-------EINGLLVGFGQVICLPTKPHCDTCKLSARGLC 210
Query: 612 RHFASAFASS 621
+ AF ++
Sbjct: 211 PNARMAFKAT 220
>gi|365127857|ref|ZP_09340279.1| endonuclease III [Subdoligranulum sp. 4_3_54A2FAA]
gi|363623787|gb|EHL74889.1| endonuclease III [Subdoligranulum sp. 4_3_54A2FAA]
Length = 221
Score = 51.6 bits (122), Expect = 0.002, Method: Composition-based stats.
Identities = 46/170 (27%), Positives = 72/170 (42%), Gaps = 26/170 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
EA+ A + I IK G+ A + N L+R++G VP +A E LL
Sbjct: 63 EALAAAGPDAIEAIIKPCGLGKSKARDLAGMANMLLREYGG-------KVP--QAMEDLL 113
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
G+G KS +R H A DT+ R+A R+G+V P ++ L+++ P E
Sbjct: 114 RLPGVGRKSANLIRGDIFHLPAVVADTHCIRMANRIGFVTDTTDPVQVERALVKVLPPEE 173
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
S + ++ + G+V CT K C C ++ CR
Sbjct: 174 S-----------------NDFCHRCVMHGRVVCTARKALCEVCCLQDVCR 206
>gi|67479287|ref|XP_655025.1| endonuclease III [Entamoeba histolytica HM-1:IMSS]
gi|56472130|gb|EAL49639.1| endonuclease III, putative [Entamoeba histolytica HM-1:IMSS]
gi|449707262|gb|EMD46954.1| endonuclease III, putative [Entamoeba histolytica KU27]
Length = 241
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 74/180 (41%), Gaps = 28/180 (15%)
Query: 436 TKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPD 495
T L + + + + N IK G A R+K H V ++ +
Sbjct: 85 TLGELSVDVINNTSLEVLINCIKGVGFYTTKAKRLK---------HCCVIMKEQYNNQVP 135
Query: 496 KAKEYLLSFRGLGLKSVECVRLLTLHHL-AFPVDTNVGRIAVRLGWVPLQPLPESLQLHL 554
+ K+ LL+ G+G K + + L + +DT+V I+ RLGW PE ++L L
Sbjct: 136 QTKQQLLTLPGVGPKIASLILSIGFDRLESLAIDTHVFVISQRLGWAD-GSTPEKVRLQL 194
Query: 555 LELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
P E WP K ++ FG+ C K+ P C CP++ +C+++
Sbjct: 195 ESWLPKEE------WPLFNK-----------SLVAFGQCCCRKTHPKCKQCPIQDKCQYY 237
>gi|393796715|ref|ZP_10380079.1| DNA-(apurinic or apyrimidinic site) lyase [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 175
Score = 51.6 bits (122), Expect = 0.002, Method: Composition-based stats.
Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 19/127 (14%)
Query: 494 PDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 553
PD E L+ G+G K+ CV + A PVD +V RI+ RLG V + PE +
Sbjct: 68 PDNL-EKLVELPGVGRKTANCVLVYAFDKPAIPVDIHVHRISNRLGLVDTKT-PEETEQE 125
Query: 554 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
L+ + P K W +++ + +G+ C P C+ C ++ +C+
Sbjct: 126 LMRIIP------KKFW-----------IDINDTFVMYGQNICKPISPMCSVCKIKNDCKF 168
Query: 614 FASAFAS 620
+ + AS
Sbjct: 169 YKTKNAS 175
>gi|299538661|ref|ZP_07051944.1| endonuclease III [Lysinibacillus fusiformis ZC1]
gi|424736041|ref|ZP_18164502.1| endonuclease III [Lysinibacillus fusiformis ZB2]
gi|298726248|gb|EFI66840.1| endonuclease III [Lysinibacillus fusiformis ZC1]
gi|422950070|gb|EKU44440.1| endonuclease III [Lysinibacillus fusiformis ZB2]
Length = 220
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 26/163 (15%)
Query: 450 VNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGL 509
+ ++ I+ G+ A I+ RL+ ++G ++P +E L++ G+G
Sbjct: 70 LEELQQDIRSIGLYRNKAKNIQALCQRLLDEYGG-------EIPA--TREALVTLPGVGR 120
Query: 510 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 569
K+ V + A VDT+V R++ RLG + + V E+I K
Sbjct: 121 KTANVVLSVAFDIPALAVDTHVERVSKRLGLCRWKD----------SVLEVEETIMK--- 167
Query: 570 PRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
K + H+Q+I FG+ C P C CP+ +CR
Sbjct: 168 ----KTPMEKWSKTHHQLIFFGRYHCKAQNPGCRTCPLLNDCR 206
>gi|424811992|ref|ZP_18237232.1| putative EndoIII-related endonuclease [Candidatus Nanosalinarum sp.
J07AB56]
gi|339756214|gb|EGQ39797.1| putative EndoIII-related endonuclease [Candidatus Nanosalinarum sp.
J07AB56]
Length = 219
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDH--GSVDLEWLRDVPPDKAKE 499
W V A ++ + ++ G+ A RI+ L LVR+ G +++L ++ + AKE
Sbjct: 61 WREVEEAPEGELTDVVRVAGLGPTKAERIQKALE-LVREETGGDYSVDFLDEMSTEDAKE 119
Query: 500 YLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVP 542
+L S G+G K+ V + FPVDT+V R++ R G VP
Sbjct: 120 WLESLPGVGPKTAAIVLCFHMGRAVFPVDTHVHRLSKRWGIVP 162
>gi|124027163|ref|YP_001012483.1| EndoIII-related endonuclease [Hyperthermus butylicus DSM 5456]
gi|123977857|gb|ABM80138.1| predicted EndoIII-related endonuclease [Hyperthermus butylicus DSM
5456]
Length = 242
Score = 51.2 bits (121), Expect = 0.003, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 51/123 (41%), Gaps = 17/123 (13%)
Query: 489 LRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPE 548
L ++P + +E+LLS G+G K+ + L F VDT+ RIA R G V + +
Sbjct: 121 LLEMPWRELREFLLSIPGVGKKTADVFLQLVRKAPVFAVDTHAARIAKRWGLVGEKAGYD 180
Query: 549 SLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMR 608
LLE + S H +I G+ +C P C+ CP+R
Sbjct: 181 ETSRALLEFFGPERS-----------------ENAHRLLIALGRTYCRARNPRCDVCPLR 223
Query: 609 GEC 611
C
Sbjct: 224 DIC 226
>gi|293400780|ref|ZP_06644925.1| endonuclease III [Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291305806|gb|EFE47050.1| endonuclease III [Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 215
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 50/119 (42%), Gaps = 18/119 (15%)
Query: 494 PDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 553
P KE L S G+G K+ VR + A VDT+V RIA RLG + E ++
Sbjct: 102 PQSMKE-LTSLAGVGRKTANVVRSVCFDIPAIAVDTHVERIAKRLGLAKVGDSVEVVEQK 160
Query: 554 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
L I++ W R H+ I FG+ CT P C+ CP C+
Sbjct: 161 LKR------KIKRERWNRA-----------HHLFIFFGRYQCTARNPQCDQCPFASFCK 202
>gi|29375731|ref|NP_814885.1| endonuclease III [Enterococcus faecalis V583]
gi|227518409|ref|ZP_03948458.1| DNA-(apurinic or apyrimidinic site) lyase [Enterococcus faecalis
TX0104]
gi|227552941|ref|ZP_03982990.1| DNA-(apurinic or apyrimidinic site) lyase [Enterococcus faecalis
HH22]
gi|229550352|ref|ZP_04439077.1| DNA-(apurinic or apyrimidinic site) lyase [Enterococcus faecalis
ATCC 29200]
gi|255973123|ref|ZP_05423709.1| endonuclease III/Nth [Enterococcus faecalis T1]
gi|255976166|ref|ZP_05426752.1| endonuclease III/Nth [Enterococcus faecalis T2]
gi|256618739|ref|ZP_05475585.1| endonuclease III/Nth [Enterococcus faecalis ATCC 4200]
gi|256762163|ref|ZP_05502743.1| endonuclease III [Enterococcus faecalis T3]
gi|256958651|ref|ZP_05562822.1| endonuclease III/Nth [Enterococcus faecalis DS5]
gi|256962250|ref|ZP_05566421.1| endonuclease III/Nth [Enterococcus faecalis Merz96]
gi|256965444|ref|ZP_05569615.1| endonuclease III/Nth [Enterococcus faecalis HIP11704]
gi|257077995|ref|ZP_05572356.1| endonuclease III/Nth [Enterococcus faecalis JH1]
gi|257082883|ref|ZP_05577244.1| endonuclease III [Enterococcus faecalis E1Sol]
gi|257085585|ref|ZP_05579946.1| endonuclease III/Nth [Enterococcus faecalis Fly1]
gi|257086509|ref|ZP_05580870.1| endonuclease III/Nth [Enterococcus faecalis D6]
gi|257089566|ref|ZP_05583927.1| endonuclease III [Enterococcus faecalis CH188]
gi|257415773|ref|ZP_05592767.1| endonuclease III/Nth [Enterococcus faecalis ARO1/DG]
gi|257418983|ref|ZP_05595977.1| endonuclease III/Nth [Enterococcus faecalis T11]
gi|257422928|ref|ZP_05599918.1| endonuclease III [Enterococcus faecalis X98]
gi|293383279|ref|ZP_06629194.1| endonuclease III [Enterococcus faecalis R712]
gi|293387564|ref|ZP_06632113.1| endonuclease III [Enterococcus faecalis S613]
gi|294781025|ref|ZP_06746377.1| endonuclease III [Enterococcus faecalis PC1.1]
gi|300859914|ref|ZP_07106002.1| endonuclease III [Enterococcus faecalis TUSoD Ef11]
gi|307274543|ref|ZP_07555723.1| endonuclease III [Enterococcus faecalis TX2134]
gi|307278810|ref|ZP_07559873.1| endonuclease III [Enterococcus faecalis TX0860]
gi|312903687|ref|ZP_07762863.1| endonuclease III [Enterococcus faecalis TX0635]
gi|312905786|ref|ZP_07764806.1| endonuclease III [Enterococcus faecalis DAPTO 512]
gi|312909159|ref|ZP_07768018.1| endonuclease III [Enterococcus faecalis DAPTO 516]
gi|312951406|ref|ZP_07770304.1| endonuclease III [Enterococcus faecalis TX0102]
gi|384512896|ref|YP_005707989.1| endonuclease III [Enterococcus faecalis OG1RF]
gi|384518260|ref|YP_005705565.1| endonuclease III [Enterococcus faecalis 62]
gi|397699542|ref|YP_006537330.1| endonuclease III [Enterococcus faecalis D32]
gi|421512166|ref|ZP_15958979.1| Endonuclease III [Enterococcus faecalis ATCC 29212]
gi|422689556|ref|ZP_16747665.1| endonuclease III [Enterococcus faecalis TX0630]
gi|422691633|ref|ZP_16749666.1| endonuclease III [Enterococcus faecalis TX0031]
gi|422694151|ref|ZP_16752155.1| endonuclease III [Enterococcus faecalis TX4244]
gi|422700613|ref|ZP_16758459.1| endonuclease III [Enterococcus faecalis TX1342]
gi|422705899|ref|ZP_16763690.1| endonuclease III [Enterococcus faecalis TX0043]
gi|422711028|ref|ZP_16767962.1| endonuclease III [Enterococcus faecalis TX0027]
gi|422712347|ref|ZP_16769117.1| endonuclease III [Enterococcus faecalis TX0309A]
gi|422718091|ref|ZP_16774763.1| endonuclease III [Enterococcus faecalis TX0309B]
gi|422721186|ref|ZP_16777781.1| endonuclease III [Enterococcus faecalis TX0017]
gi|422721893|ref|ZP_16778473.1| endonuclease III [Enterococcus faecalis TX2137]
gi|422726706|ref|ZP_16783150.1| endonuclease III [Enterococcus faecalis TX0312]
gi|422729113|ref|ZP_16785518.1| endonuclease III [Enterococcus faecalis TX0012]
gi|422733017|ref|ZP_16789343.1| endonuclease III [Enterococcus faecalis TX0645]
gi|422734872|ref|ZP_16791154.1| endonuclease III [Enterococcus faecalis TX1341]
gi|422739571|ref|ZP_16794747.1| endonuclease III [Enterococcus faecalis TX2141]
gi|424671493|ref|ZP_18108492.1| endonuclease III [Enterococcus faecalis 599]
gi|424678455|ref|ZP_18115294.1| endonuclease III [Enterococcus faecalis ERV103]
gi|424681894|ref|ZP_18118678.1| endonuclease III [Enterococcus faecalis ERV116]
gi|424685054|ref|ZP_18121760.1| endonuclease III [Enterococcus faecalis ERV129]
gi|424687158|ref|ZP_18123808.1| endonuclease III [Enterococcus faecalis ERV25]
gi|424692115|ref|ZP_18128629.1| endonuclease III [Enterococcus faecalis ERV31]
gi|424693250|ref|ZP_18129696.1| endonuclease III [Enterococcus faecalis ERV37]
gi|424697506|ref|ZP_18133833.1| endonuclease III [Enterococcus faecalis ERV41]
gi|424700671|ref|ZP_18136854.1| endonuclease III [Enterococcus faecalis ERV62]
gi|424703642|ref|ZP_18139775.1| endonuclease III [Enterococcus faecalis ERV63]
gi|424712278|ref|ZP_18144470.1| endonuclease III [Enterococcus faecalis ERV65]
gi|424718347|ref|ZP_18147596.1| endonuclease III [Enterococcus faecalis ERV68]
gi|424721223|ref|ZP_18150317.1| endonuclease III [Enterococcus faecalis ERV72]
gi|424725925|ref|ZP_18154614.1| endonuclease III [Enterococcus faecalis ERV73]
gi|424727389|ref|ZP_18156021.1| endonuclease III [Enterococcus faecalis ERV81]
gi|424739690|ref|ZP_18168107.1| endonuclease III [Enterococcus faecalis ERV85]
gi|424751534|ref|ZP_18179562.1| endonuclease III [Enterococcus faecalis ERV93]
gi|428766664|ref|YP_007152775.1| endonuclease III [Enterococcus faecalis str. Symbioflor 1]
gi|430360541|ref|ZP_19426330.1| endonuclease III [Enterococcus faecalis OG1X]
gi|430369976|ref|ZP_19428832.1| endonuclease III [Enterococcus faecalis M7]
gi|29343192|gb|AAO80955.1| endonuclease III [Enterococcus faecalis V583]
gi|227074087|gb|EEI12050.1| DNA-(apurinic or apyrimidinic site) lyase [Enterococcus faecalis
TX0104]
gi|227177911|gb|EEI58883.1| DNA-(apurinic or apyrimidinic site) lyase [Enterococcus faecalis
HH22]
gi|229304474|gb|EEN70470.1| DNA-(apurinic or apyrimidinic site) lyase [Enterococcus faecalis
ATCC 29200]
gi|255964141|gb|EET96617.1| endonuclease III/Nth [Enterococcus faecalis T1]
gi|255969038|gb|EET99660.1| endonuclease III/Nth [Enterococcus faecalis T2]
gi|256598266|gb|EEU17442.1| endonuclease III/Nth [Enterococcus faecalis ATCC 4200]
gi|256683414|gb|EEU23109.1| endonuclease III [Enterococcus faecalis T3]
gi|256949147|gb|EEU65779.1| endonuclease III/Nth [Enterococcus faecalis DS5]
gi|256952746|gb|EEU69378.1| endonuclease III/Nth [Enterococcus faecalis Merz96]
gi|256955940|gb|EEU72572.1| endonuclease III/Nth [Enterococcus faecalis HIP11704]
gi|256986025|gb|EEU73327.1| endonuclease III/Nth [Enterococcus faecalis JH1]
gi|256990913|gb|EEU78215.1| endonuclease III [Enterococcus faecalis E1Sol]
gi|256993615|gb|EEU80917.1| endonuclease III/Nth [Enterococcus faecalis Fly1]
gi|256994539|gb|EEU81841.1| endonuclease III/Nth [Enterococcus faecalis D6]
gi|256998378|gb|EEU84898.1| endonuclease III [Enterococcus faecalis CH188]
gi|257157601|gb|EEU87561.1| endonuclease III/Nth [Enterococcus faecalis ARO1/DG]
gi|257160811|gb|EEU90771.1| endonuclease III/Nth [Enterococcus faecalis T11]
gi|257164752|gb|EEU94712.1| endonuclease III [Enterococcus faecalis X98]
gi|291079302|gb|EFE16666.1| endonuclease III [Enterococcus faecalis R712]
gi|291083074|gb|EFE20037.1| endonuclease III [Enterococcus faecalis S613]
gi|294451971|gb|EFG20421.1| endonuclease III [Enterococcus faecalis PC1.1]
gi|295112731|emb|CBL31368.1| DNA-(apurinic or apyrimidinic site) lyase /endonuclease III
[Enterococcus sp. 7L76]
gi|300850732|gb|EFK78481.1| endonuclease III [Enterococcus faecalis TUSoD Ef11]
gi|306504481|gb|EFM73688.1| endonuclease III [Enterococcus faecalis TX0860]
gi|306508695|gb|EFM77785.1| endonuclease III [Enterococcus faecalis TX2134]
gi|310628125|gb|EFQ11408.1| endonuclease III [Enterococcus faecalis DAPTO 512]
gi|310630666|gb|EFQ13949.1| endonuclease III [Enterococcus faecalis TX0102]
gi|310633040|gb|EFQ16323.1| endonuclease III [Enterococcus faecalis TX0635]
gi|311290583|gb|EFQ69139.1| endonuclease III [Enterococcus faecalis DAPTO 516]
gi|315028111|gb|EFT40043.1| endonuclease III [Enterococcus faecalis TX2137]
gi|315031632|gb|EFT43564.1| endonuclease III [Enterococcus faecalis TX0017]
gi|315034925|gb|EFT46857.1| endonuclease III [Enterococcus faecalis TX0027]
gi|315144668|gb|EFT88684.1| endonuclease III [Enterococcus faecalis TX2141]
gi|315148491|gb|EFT92507.1| endonuclease III [Enterococcus faecalis TX4244]
gi|315150361|gb|EFT94377.1| endonuclease III [Enterococcus faecalis TX0012]
gi|315153677|gb|EFT97693.1| endonuclease III [Enterococcus faecalis TX0031]
gi|315156505|gb|EFU00522.1| endonuclease III [Enterococcus faecalis TX0043]
gi|315158331|gb|EFU02348.1| endonuclease III [Enterococcus faecalis TX0312]
gi|315160901|gb|EFU04918.1| endonuclease III [Enterococcus faecalis TX0645]
gi|315168422|gb|EFU12439.1| endonuclease III [Enterococcus faecalis TX1341]
gi|315171005|gb|EFU15022.1| endonuclease III [Enterococcus faecalis TX1342]
gi|315573746|gb|EFU85937.1| endonuclease III [Enterococcus faecalis TX0309B]
gi|315577515|gb|EFU89706.1| endonuclease III [Enterococcus faecalis TX0630]
gi|315582639|gb|EFU94830.1| endonuclease III [Enterococcus faecalis TX0309A]
gi|323480393|gb|ADX79832.1| endonuclease III [Enterococcus faecalis 62]
gi|327534785|gb|AEA93619.1| endonuclease III [Enterococcus faecalis OG1RF]
gi|397336181|gb|AFO43853.1| endonuclease III [Enterococcus faecalis D32]
gi|401674735|gb|EJS81080.1| Endonuclease III [Enterococcus faecalis ATCC 29212]
gi|402350027|gb|EJU84940.1| endonuclease III [Enterococcus faecalis ERV116]
gi|402351433|gb|EJU86317.1| endonuclease III [Enterococcus faecalis ERV103]
gi|402358521|gb|EJU93189.1| endonuclease III [Enterococcus faecalis 599]
gi|402359907|gb|EJU94527.1| endonuclease III [Enterococcus faecalis ERV129]
gi|402360640|gb|EJU95236.1| endonuclease III [Enterococcus faecalis ERV31]
gi|402365539|gb|EJU99958.1| endonuclease III [Enterococcus faecalis ERV25]
gi|402373403|gb|EJV07480.1| endonuclease III [Enterococcus faecalis ERV62]
gi|402374735|gb|EJV08739.1| endonuclease III [Enterococcus faecalis ERV37]
gi|402376056|gb|EJV10026.1| endonuclease III [Enterococcus faecalis ERV41]
gi|402381314|gb|EJV15023.1| endonuclease III [Enterococcus faecalis ERV65]
gi|402381902|gb|EJV15595.1| endonuclease III [Enterococcus faecalis ERV68]
gi|402384517|gb|EJV18069.1| endonuclease III [Enterococcus faecalis ERV63]
gi|402390268|gb|EJV23623.1| endonuclease III [Enterococcus faecalis ERV73]
gi|402391893|gb|EJV25171.1| endonuclease III [Enterococcus faecalis ERV72]
gi|402396860|gb|EJV29904.1| endonuclease III [Enterococcus faecalis ERV81]
gi|402402961|gb|EJV35657.1| endonuclease III [Enterococcus faecalis ERV85]
gi|402405448|gb|EJV38039.1| endonuclease III [Enterococcus faecalis ERV93]
gi|427184837|emb|CCO72061.1| endonuclease III [Enterococcus faecalis str. Symbioflor 1]
gi|429512818|gb|ELA02414.1| endonuclease III [Enterococcus faecalis OG1X]
gi|429515703|gb|ELA05213.1| endonuclease III [Enterococcus faecalis M7]
Length = 215
Score = 51.2 bits (121), Expect = 0.003, Method: Composition-based stats.
Identities = 47/170 (27%), Positives = 70/170 (41%), Gaps = 26/170 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
EA+ A V +I IK G+ A IK +L+ +VP + ++ L+
Sbjct: 63 EALAAAPVEEIIAKIKTIGLYRNKAKNIKACAQQLLERFNG-------EVP--QTRDELV 113
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
S G+G K+ V AF VDT+V R++ RL L ++ L+ P
Sbjct: 114 SLPGVGRKTANVVMGDAFGEPAFAVDTHVERVSKRLRICKLNANVTEVEQTLMRKVP--- 170
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
K LW + H+ MI FG+ C P C ACP+ C+
Sbjct: 171 ---KELWVKT-----------HHTMIFFGRYHCLARAPKCEACPLLYMCQ 206
>gi|410697701|gb|AFV76769.1| endonuclease III [Thermus oshimai JL-2]
Length = 217
Score = 51.2 bits (121), Expect = 0.003, Method: Composition-based stats.
Identities = 45/155 (29%), Positives = 64/155 (41%), Gaps = 28/155 (18%)
Query: 457 IKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVR 516
IK G+ A + RLV +HG +VP DK + L+ G+G K+ V
Sbjct: 85 IKRIGLYRTKARNLVALARRLVEEHGG-------EVPRDK--KALMRLPGVGWKTATVV- 134
Query: 517 LLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLD 576
L L VDT+V R+A RL + PE + L L+P
Sbjct: 135 LGVLGVPGIAVDTHVARLARRL-CLSQAKRPEKIGADLEALFP----------------- 176
Query: 577 QRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
Q +H+ ++ G+ CT KP C ACP+ C
Sbjct: 177 QEDWVFVHHALVLHGRYVCTARKPKCAACPLAPHC 211
>gi|422696813|ref|ZP_16754764.1| endonuclease III [Enterococcus faecalis TX1346]
gi|315174673|gb|EFU18690.1| endonuclease III [Enterococcus faecalis TX1346]
Length = 215
Score = 51.2 bits (121), Expect = 0.003, Method: Composition-based stats.
Identities = 47/170 (27%), Positives = 70/170 (41%), Gaps = 26/170 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
EA+ A V +I IK G+ A IK +L+ +VP + ++ L+
Sbjct: 63 EALAAAPVEEIIAKIKTIGLYRNKAKNIKACAQQLLERFNG-------EVP--QTRDELV 113
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
S G+G K+ V AF VDT+V R++ RL L ++ L+ P
Sbjct: 114 SLPGVGRKTANVVMGDVFGEPAFAVDTHVERVSKRLRICKLNANVTEVEQTLMRKVP--- 170
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
K LW + H+ MI FG+ C P C ACP+ C+
Sbjct: 171 ---KELWVKT-----------HHTMIFFGRYHCLARAPKCEACPLLYMCQ 206
>gi|229546166|ref|ZP_04434891.1| DNA-(apurinic or apyrimidinic site) lyase [Enterococcus faecalis
TX1322]
gi|256852805|ref|ZP_05558175.1| endonuclease III [Enterococcus faecalis T8]
gi|307291137|ref|ZP_07571022.1| endonuclease III [Enterococcus faecalis TX0411]
gi|422684523|ref|ZP_16742757.1| endonuclease III [Enterococcus faecalis TX4000]
gi|424759883|ref|ZP_18187541.1| endonuclease III [Enterococcus faecalis R508]
gi|229308690|gb|EEN74677.1| DNA-(apurinic or apyrimidinic site) lyase [Enterococcus faecalis
TX1322]
gi|256711264|gb|EEU26302.1| endonuclease III [Enterococcus faecalis T8]
gi|306497791|gb|EFM67323.1| endonuclease III [Enterococcus faecalis TX0411]
gi|315030680|gb|EFT42612.1| endonuclease III [Enterococcus faecalis TX4000]
gi|402404286|gb|EJV36916.1| endonuclease III [Enterococcus faecalis R508]
Length = 215
Score = 51.2 bits (121), Expect = 0.003, Method: Composition-based stats.
Identities = 47/170 (27%), Positives = 70/170 (41%), Gaps = 26/170 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
EA+ A V +I IK G+ A IK +L+ +VP + ++ L+
Sbjct: 63 EALAAAPVEEIIAKIKTIGLYRNKAKNIKACAQQLLERFNG-------EVP--QTRDELV 113
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
S G+G K+ V AF VDT+V R++ RL L ++ L+ P
Sbjct: 114 SLPGVGRKTANVVMGDAFGEPAFAVDTHVERVSKRLRICKLNANVTEVEQTLMRKVP--- 170
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
K LW + H+ MI FG+ C P C ACP+ C+
Sbjct: 171 ---KELWVKT-----------HHTMIFFGRYHCLARAPKCEACPLLYMCQ 206
>gi|289192102|ref|YP_003458043.1| HhH-GPD family protein [Methanocaldococcus sp. FS406-22]
gi|288938552|gb|ADC69307.1| HhH-GPD family protein [Methanocaldococcus sp. FS406-22]
Length = 222
Score = 51.2 bits (121), Expect = 0.003, Method: Composition-based stats.
Identities = 45/168 (26%), Positives = 75/168 (44%), Gaps = 16/168 (9%)
Query: 440 LDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKE 499
LD E + D +K+ IK G N+ A R+K+ +V ++G+ + D +
Sbjct: 62 LDEEKILNVDEDKLKELIKPAGFYNLKAKRLKNVTKFIVDNYGNTEEMAKTDKDTLTLRA 121
Query: 500 YLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
LLS G+G ++ + + L L +F VD R+ RLG + + + ++
Sbjct: 122 ELLSINGVGKETADSILLYALDRESFVVDAYTKRMFSRLGIINEKAKYDEIK-------- 173
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPM 607
E +K L P+ D E H ++ K FC K KP C+ CP+
Sbjct: 174 --EIFEKSL-PK----DLEIYKEYHALIVEHCKKFCRK-KPLCDNCPI 213
>gi|188582085|ref|YP_001925530.1| HhH-GPD family protein [Methylobacterium populi BJ001]
gi|179345583|gb|ACB80995.1| HhH-GPD family protein [Methylobacterium populi BJ001]
Length = 259
Score = 51.2 bits (121), Expect = 0.003, Method: Composition-based stats.
Identities = 50/176 (28%), Positives = 75/176 (42%), Gaps = 22/176 (12%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
DW + A V I TI+ + A RIK L + G++ L++L D+ D+A+ +
Sbjct: 86 DWAEIEQASVEDIEATIRSVTWPELKAPRIKAVLAAVRERVGALSLDFLGDMSVDEARGW 145
Query: 501 LLSFRGLGLK-SVECVRLLTLHHLAFPVDTNVGRIAVRLGW----VPLQPLPESLQLHLL 555
L + G+G K S + TL A PVD++ R+A R G V + P L+ L
Sbjct: 146 LEAIPGIGPKTSAAVLSFSTLRMPALPVDSHHHRVAQRTGLIGSKVDVGPSHAVLRAQL- 204
Query: 556 ELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
P S QK LY+ H ++ G+ C P C C + C
Sbjct: 205 ---PDDWSAQK-------------LYDNHEVLMLHGQRVCFHHSPACGRCVLLDIC 244
>gi|330811337|ref|YP_004355799.1| DNA lyase [Pseudomonas brassicacearum subsp. brassicacearum NFM421]
gi|423698896|ref|ZP_17673386.1| endonuclease III [Pseudomonas fluorescens Q8r1-96]
gi|327379445|gb|AEA70795.1| DNA-(apurinic or apyrimidinic site) lyase [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|387996602|gb|EIK57932.1| endonuclease III [Pseudomonas fluorescens Q8r1-96]
Length = 212
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 72/171 (42%), Gaps = 27/171 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
EA+ V ++ IK G+ N A + + L+ HGS +VP + +E L
Sbjct: 62 EAIYALGVEGLSEYIKTIGLFNSKAKNVIETCRLLIERHGS-------EVP--QTREALE 112
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
+ G+G K+ V L VDT++ R++ R G P + + E ++ L++ P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQLTMAVDTHIFRVSNRTGLAPGKNVVE-VEKKLMKFVP--- 168
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
+ L + H+ +I G+ C KP C +C + C +
Sbjct: 169 --------------KEFLLDSHHWLILHGRYVCLARKPRCGSCRIEDLCEY 205
>gi|160937119|ref|ZP_02084482.1| hypothetical protein CLOBOL_02010 [Clostridium bolteae ATCC
BAA-613]
gi|158440020|gb|EDP17768.1| hypothetical protein CLOBOL_02010 [Clostridium bolteae ATCC
BAA-613]
Length = 318
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 462 MNNMLAGRIKDFLNRLVRD--HGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLT 519
M L R K +++RL +D G +DL L + ++A EYL F G+G K CV L
Sbjct: 190 MGLKLGYRAK-YIHRLCQDAVSGRLDLSHLAALNYEEAMEYLTGFYGIGKKVANCVCLFG 248
Query: 520 LHHL-AFPVDTNVGRI 534
LHH+ AFPVDT + +I
Sbjct: 249 LHHIDAFPVDTWIEKI 264
>gi|120553864|ref|YP_958215.1| endonuclease III [Marinobacter aquaeolei VT8]
gi|120323713|gb|ABM18028.1| endonuclease III [Marinobacter aquaeolei VT8]
Length = 212
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 70/169 (41%), Gaps = 27/169 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
EA+ V+ + IK G+ N A + L+ HGS +VP + E L
Sbjct: 62 EAILALGVDGLKEYIKTIGLFNSKAENVIKTCRILIEKHGS-------EVPARR--EDLE 112
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
+ G+G K+ V A VDT++ R++ R G P + + E ++ LL L P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQPAMAVDTHIFRVSNRTGIAPGKNVLE-VEKRLLRLVP--- 168
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
+ L + H+ +I G+ CT KP C AC + C
Sbjct: 169 --------------KEFLMDAHHWLILHGRYTCTARKPKCGACIIEDLC 203
>gi|150391360|ref|YP_001321409.1| endonuclease III [Alkaliphilus metalliredigens QYMF]
gi|149951222|gb|ABR49750.1| endonuclease III [Alkaliphilus metalliredigens QYMF]
Length = 216
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 70/163 (42%), Gaps = 27/163 (16%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
++ IK G NM + I + L+ HG +VP ++ E L++ G+G K+
Sbjct: 76 ELGQWIKSCGFYNMKSKNILATCHLLMEKHGG-------EVPEER--EALMALPGVGRKT 126
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
V A VDT+V R++ RLG + ++ Q +++SI K +W
Sbjct: 127 ANVVISNVFGQDAIAVDTHVFRVSNRLGLAHSDNVDDTEQ-------DLMKSIPKSMWS- 178
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
+ H+ +I G+ C +P C CP+ C H+
Sbjct: 179 ----------DAHHWIILHGRRICKARRPLCEECPLTTYCLHY 211
>gi|448432620|ref|ZP_21585676.1| HhH-GPD family protein [Halorubrum tebenquichense DSM 14210]
gi|445686876|gb|ELZ39180.1| HhH-GPD family protein [Halorubrum tebenquichense DSM 14210]
Length = 232
Score = 51.2 bits (121), Expect = 0.003, Method: Composition-based stats.
Identities = 42/164 (25%), Positives = 67/164 (40%), Gaps = 18/164 (10%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHG-SVDLEWLRDVPPDKAKE 499
D+ A+ AD + TI+ G+ + A RI+ L + + G + L +L + D AK
Sbjct: 73 DFAAIEAADHEALRETIRVAGLPDQKAARIQRALAAIREETGGAYSLAFLDAMATDDAKA 132
Query: 500 YLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
+L +G+G K+ V VDT+V R++ R G VP L E P
Sbjct: 133 WLTDIKGVGPKTASVVLNFHFGKPTMAVDTHVERVSKRFGLVPESASNGRAHEVLDERVP 192
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCN 603
+Y LH +I G+ C+ P+C+
Sbjct: 193 -----------------DELIYPLHVLLIRHGREHCSARNPDCD 219
>gi|373451906|ref|ZP_09543824.1| endonuclease III [Eubacterium sp. 3_1_31]
gi|371967338|gb|EHO84809.1| endonuclease III [Eubacterium sp. 3_1_31]
Length = 215
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 50/119 (42%), Gaps = 18/119 (15%)
Query: 494 PDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 553
P KE L S G+G K+ VR + A VDT+V RIA RLG + E ++
Sbjct: 102 PQSMKE-LTSLAGVGRKTANVVRSVCFDIPAIAVDTHVERIAKRLGLAKVGDSVEVVEQK 160
Query: 554 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
L I++ W R H+ I FG+ CT P C+ CP C+
Sbjct: 161 LKR------KIKRERWNRA-----------HHLFIFFGRYQCTARNPQCDQCPFASFCK 202
>gi|404496830|ref|YP_006720936.1| endonuclease III-like DNA glycosidase [Geobacter metallireducens
GS-15]
gi|418065220|ref|ZP_12702594.1| DNA-(apurinic or apyrimidinic site) lyase [Geobacter
metallireducens RCH3]
gi|78194435|gb|ABB32202.1| endonuclease III-related DNA glycosidase, HhH-GPD superfamily
[Geobacter metallireducens GS-15]
gi|373562398|gb|EHP88609.1| DNA-(apurinic or apyrimidinic site) lyase [Geobacter
metallireducens RCH3]
Length = 218
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 76/195 (38%), Gaps = 31/195 (15%)
Query: 418 SLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRL 477
SLR Q G ER D+ +D I I G A +I D L
Sbjct: 45 SLRTQDRTTGPASERLFGLADTPAKMLFLSSDA--IEQAIYPVGFYRNKAAQILDICRTL 102
Query: 478 VRDH-GSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAV 536
V + G V PD E LL+FRG+G K+ V L LA VDT+V RI
Sbjct: 103 VDKYDGQV---------PDDLDE-LLTFRGVGRKTANLVLTLGFGKLAICVDTHVHRICN 152
Query: 537 RLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCT 596
R G+ + P + L P QKY WP ++ ++TFG+ CT
Sbjct: 153 RWGYTSTKT-PAETEFALRAKLP-----QKY-WP-----------VINDYLVTFGQNQCT 194
Query: 597 KSKPNCNACPMRGEC 611
P C+ C + C
Sbjct: 195 PVSPRCSTCVLVCFC 209
>gi|379023259|ref|YP_005299920.1| endonuclease III [Rickettsia canadensis str. CA410]
gi|376324197|gb|AFB21438.1| endonuclease III [Rickettsia canadensis str. CA410]
Length = 209
Score = 51.2 bits (121), Expect = 0.003, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 19/124 (15%)
Query: 494 PDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 553
P+ KE L+ G+G K+ V VDT+V R+A R+G + PE ++
Sbjct: 105 PNSFKE-LVKLPGVGRKTANVVLNCLFGMPTMAVDTHVFRVAKRIG-LAQGSTPEVVEKE 162
Query: 554 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
LL++ L+++ L H+ +I G+ C KP+C+ CP++ C +
Sbjct: 163 LLQI-----------------LNKKWLMHAHHWLILHGRYICKARKPDCDICPVKKYCEY 205
Query: 614 FASA 617
+ +A
Sbjct: 206 YLNA 209
>gi|228476833|ref|ZP_04061478.1| endonuclease III [Streptococcus salivarius SK126]
gi|387761465|ref|YP_006068442.1| endonuclease III [Streptococcus salivarius 57.I]
gi|228251407|gb|EEK10552.1| endonuclease III [Streptococcus salivarius SK126]
gi|339292232|gb|AEJ53579.1| endonuclease III [Streptococcus salivarius 57.I]
Length = 214
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 64/147 (43%), Gaps = 19/147 (12%)
Query: 468 GRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPV 527
G K+ +++ +V + + VP K + L S G+G K+ V + V
Sbjct: 81 GLYKNKAKNIIKTARAVLMNFDGQVP--KTHKELESLPGVGRKTANVVLAEVYGIPSIAV 138
Query: 528 DTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQM 587
DT+V R++ RL VP E ++ L++ K+ +R H++M
Sbjct: 139 DTHVSRVSKRLNIVPEDASVEEIEAELMK-----------------KIPKRDWIISHHRM 181
Query: 588 ITFGKVFCTKSKPNCNACPMRGECRHF 614
I FG+ C P C CP++ C+++
Sbjct: 182 IFFGRYHCLAKNPKCQTCPLQSYCKYY 208
>gi|291561112|emb|CBL39911.1| 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase
[butyrate-producing bacterium SS3/4]
Length = 298
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Query: 462 MNNMLA---GRIKDFLNRLVRD--HGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVR 516
++++LA G ++ R D G +DL+ LR + + E LLS G+G+K C+
Sbjct: 160 LDDLLALKLGYRAKYIKRTCEDVCSGKMDLDRLRGLNYSDSMEALLSCYGIGVKVANCIC 219
Query: 517 LLTLHHL-AFPVDTNVGRIAVR 537
L LHH+ AFPVDT + +I +R
Sbjct: 220 LFGLHHIGAFPVDTWIKKILLR 241
>gi|160902834|ref|YP_001568415.1| endonuclease III [Petrotoga mobilis SJ95]
gi|160360478|gb|ABX32092.1| endonuclease III [Petrotoga mobilis SJ95]
Length = 210
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 68/160 (42%), Gaps = 29/160 (18%)
Query: 453 IANTIKERGMNNMLAGRIKDFLNRLVRDH-GSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
+ + IK GM + RI + L+ + G V PD+ +E L+ G+G K+
Sbjct: 68 LYDLIKPAGMYKQKSERIINISKILIEKYNGKV---------PDELEE-LIELPGVGRKT 117
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
V ++ A VDT+V RI+ RLGWV + PE + L ++ P LW
Sbjct: 118 ANIVLYVSFGKEALAVDTHVHRISNRLGWVKTK-TPEETEEQLKKIIP------SELWG- 169
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
L+ M+ FG+ C P C+ C + C
Sbjct: 170 ----------PLNGSMVNFGQKICKPISPKCDECFLNEVC 199
>gi|255021570|ref|ZP_05293613.1| HhH-GPD family protein [Acidithiobacillus caldus ATCC 51756]
gi|254968958|gb|EET26477.1| HhH-GPD family protein [Acidithiobacillus caldus ATCC 51756]
Length = 238
Score = 51.2 bits (121), Expect = 0.003, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 15/116 (12%)
Query: 498 KEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEL 557
+ LL G+G ++ + + L L VD R+A RLGW +
Sbjct: 117 RRKLLGVYGVGEETADSILLYALQRPISVVDAYTKRLAQRLGWA--------------DA 162
Query: 558 YPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
++Q + +L + D R ELH ++ GK +C +S+P C CP+ +CRH
Sbjct: 163 RVSYAALQSRMEAQLRRNDVRGRQELHALIVVHGKTYC-RSRPVCADCPLLRDCRH 217
>gi|297243033|ref|ZP_06926971.1| EndoIII-like endonuclease [Gardnerella vaginalis AMD]
gi|296889244|gb|EFH27978.1| EndoIII-like endonuclease [Gardnerella vaginalis AMD]
Length = 224
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 48/113 (42%), Gaps = 15/113 (13%)
Query: 499 EYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY 558
E L+S G+G K+ V FPVDT+V R+ RLGW +Q P + +
Sbjct: 122 EDLISLPGVGRKTANVVLGNAFGLPGFPVDTHVIRVTGRLGWRKVQNRPNPVAIE----- 176
Query: 559 PVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
I Y P + L +++I G+ CT P C +CP+ C
Sbjct: 177 ---REITAYFAP-------KEWTNLSHRLILHGRKICTARNPKCVSCPLNTTC 219
>gi|405972859|gb|EKC37606.1| N-glycosylase/DNA lyase [Crassostrea gigas]
Length = 364
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 6/89 (6%)
Query: 459 ERGMNNMLAGRIKDFLNR----LVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVEC 514
E + N+ G ++N+ ++ G L LR++P +AK+ LL+ G+G K +C
Sbjct: 196 ESELRNLGFGYRAKYINKSAQQILEKGGETWLRALREIPYAEAKKELLALNGVGAKVADC 255
Query: 515 VRLLTLHHL-AFPVDTNVGRIAVRLGWVP 542
V L++L A PVDT+V +IA R G++P
Sbjct: 256 VCLMSLDKTDALPVDTHVWQIAAR-GYMP 283
>gi|347753384|ref|YP_004860949.1| endonuclease III [Bacillus coagulans 36D1]
gi|347585902|gb|AEP02169.1| endonuclease III [Bacillus coagulans 36D1]
Length = 219
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 70/163 (42%), Gaps = 26/163 (15%)
Query: 450 VNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGL 509
+ ++ I+ G+ A I+ L+ ++G R+VP + +E L+ G+G
Sbjct: 70 LEELQQDIRSIGLYRNKAKNIQKLCRMLIEEYG-------REVP--QTREELMKLPGVGR 120
Query: 510 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 569
K+ V + A VDT+V R++ RLG+ + ++ L++ P E W
Sbjct: 121 KTANVVLSVAFGIPAIAVDTHVERVSKRLGFCRYKDSVLEVEQTLMKKVPKEE------W 174
Query: 570 PRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
H++MI FG+ C +P C CP+ CR
Sbjct: 175 S-----------ITHHRMIFFGRYHCKAQRPQCEICPLLDLCR 206
>gi|438000126|ref|YP_007183859.1| endonuclease III [Candidatus Kinetoplastibacterium blastocrithidii
(ex Strigomonas culicis)]
gi|451813058|ref|YP_007449511.1| endonuclease III [Candidatus Kinetoplastibacterium blastocrithidii
TCC012E]
gi|429339360|gb|AFZ83782.1| endonuclease III [Candidatus Kinetoplastibacterium blastocrithidii
(ex Strigomonas culicis)]
gi|451779027|gb|AGF49907.1| endonuclease III [Candidatus Kinetoplastibacterium blastocrithidii
TCC012E]
Length = 210
Score = 51.2 bits (121), Expect = 0.003, Method: Composition-based stats.
Identities = 41/163 (25%), Positives = 75/163 (46%), Gaps = 27/163 (16%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
++ N I++ G+ +M A I + +V G+ VP +++E L S G+G K+
Sbjct: 72 EMENLIRKIGLYHMKARNILKTCDLIVNKFGN-------KVP--ESREELESLPGVGRKT 122
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
V + + VDT+V R+A R G + P ++ L++ P +KYL
Sbjct: 123 ANVVLNVAFNQPTIAVDTHVFRVANRTG-IAKGKNPLDVEKKLIKNIP-----KKYL--- 173
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
+ H+ ++ FG+ CTK P C+ C ++ C ++
Sbjct: 174 ---------HNAHHSLVLFGRYICTKRNPKCDQCTIKNLCEYY 207
>gi|410454551|ref|ZP_11308486.1| DNA-lyase [Bacillus bataviensis LMG 21833]
gi|409931832|gb|EKN68807.1| DNA-lyase [Bacillus bataviensis LMG 21833]
Length = 213
Score = 51.2 bits (121), Expect = 0.003, Method: Composition-based stats.
Identities = 46/169 (27%), Positives = 72/169 (42%), Gaps = 19/169 (11%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
E + + +A I+ G N+ A RIK ++ +DL ++ + + LL
Sbjct: 59 EGIAQLPIEDLAQLIRPSGFFNIKAKRIKSYMAWFKTLEYDIDL--IKKIDKHLLRNELL 116
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
S +G+G ++ + + L F VD RI RLG+ +PES +
Sbjct: 117 SIKGIGRETGDVILLYAFDTPIFIVDAYARRIFYRLGY----DMPESYD-------AFRK 165
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
I+K L PR D E H ++ K C K+KP C CP+ G C
Sbjct: 166 QIEKEL-PR----DLVLYNEFHALVVEHAKEHC-KAKPICEGCPLLGIC 208
>gi|410721172|ref|ZP_11360516.1| putative endoIII-related endonuclease [Methanobacterium sp.
Maddingley MBC34]
gi|410599623|gb|EKQ54169.1| putative endoIII-related endonuclease [Methanobacterium sp.
Maddingley MBC34]
Length = 213
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 53/121 (43%), Gaps = 19/121 (15%)
Query: 494 PDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 553
PD K LL G+G K+ CV + A PVD +V RI+ RLG V + PE +
Sbjct: 104 PDYMKG-LLELPGVGRKTANCVLVYGFQKPAIPVDVHVHRISNRLGLVDTKH-PEETEAE 161
Query: 554 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
L +L P + W EL+ M+ FG+ C P CP++ C +
Sbjct: 162 LEKLVP------REYW-----------IELNDLMVQFGQTICRPQSPRHEECPLQELCDY 204
Query: 614 F 614
+
Sbjct: 205 Y 205
>gi|157804115|ref|YP_001492664.1| endonuclease III [Rickettsia canadensis str. McKiel]
gi|157785378|gb|ABV73879.1| Endonuclease III [Rickettsia canadensis str. McKiel]
Length = 209
Score = 51.2 bits (121), Expect = 0.003, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 19/124 (15%)
Query: 494 PDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 553
P+ KE L+ G+G K+ V VDT+V R+A R+G + PE ++
Sbjct: 105 PNSFKE-LVKLPGVGRKTANVVLNCLFGMPTMAVDTHVFRVAKRIG-LAQGSTPEVVEKE 162
Query: 554 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
LL++ L+++ L H+ +I G+ C KP+C+ CP++ C +
Sbjct: 163 LLQI-----------------LNKKWLMHAHHWLILHGRYICKARKPDCDICPVKKYCEY 205
Query: 614 FASA 617
+ +A
Sbjct: 206 YLNA 209
>gi|415709635|ref|ZP_11463260.1| endonuclease III [Gardnerella vaginalis 6420B]
gi|388056307|gb|EIK79183.1| endonuclease III [Gardnerella vaginalis 6420B]
Length = 224
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 48/113 (42%), Gaps = 15/113 (13%)
Query: 499 EYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY 558
E L+S G+G K+ V FPVDT+V R+ RLGW +Q P + +
Sbjct: 122 EDLISLPGVGRKTANVVLGNAFGLPGFPVDTHVIRVTGRLGWRKVQNRPNPVAIE----- 176
Query: 559 PVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
I Y P + L +++I G+ CT P C +CP+ C
Sbjct: 177 ---REITAYFAP-------KEWTNLSHRLILHGRKICTARNPKCVSCPLNTTC 219
>gi|451941382|ref|YP_007462019.1| endonuclease III [Bartonella vinsonii subsp. berkhoffii str.
Winnie]
gi|451900769|gb|AGF75231.1| endonuclease III [Bartonella vinsonii subsp. berkhoffii str.
Winnie]
Length = 246
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 76/177 (42%), Gaps = 32/177 (18%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
+IA I+ G+ A + N L+ +G VP + +E L+S G+G K+
Sbjct: 89 EIACHIRTIGLWRAKARNVYALCNFLIDQYGG-------KVP--EKREDLMSLPGVGRKT 139
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
V + H VDT++ R+ RLG P + PE ++ LL++ P+
Sbjct: 140 ANVVLNVAFGHPTLAVDTHILRLGNRLGLAPGKT-PEIVEEKLLKIIPI----------- 187
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGP 628
R L+ H+ +I G+ C K C C + C+ +A ++ A+P P
Sbjct: 188 ------RYLHHAHHWLILHGRYICQARKVQCTQCIIADLCK---AAIKTN--AIPAP 233
>gi|374636071|ref|ZP_09707655.1| HhH-GPD family protein [Methanotorris formicicus Mc-S-70]
gi|373560329|gb|EHP86596.1| HhH-GPD family protein [Methanotorris formicicus Mc-S-70]
Length = 218
Score = 50.8 bits (120), Expect = 0.003, Method: Composition-based stats.
Identities = 37/163 (22%), Positives = 69/163 (42%), Gaps = 15/163 (9%)
Query: 449 DVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLG 508
D+ K+ IK G N+ A R+K+ +V ++ + + + + ++ +L+ +G+G
Sbjct: 65 DIEKLKKLIKPAGFYNIKAERLKNITKFIVENYKNTENLAKLSIKLEDLRKEILNVKGIG 124
Query: 509 LKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYL 568
++ + + L L F +D RI R L ++E + I+
Sbjct: 125 KETADSILLYALDREIFVIDAYTRRIFSR--------------LRIIEGGEEYDEIRGIF 170
Query: 569 WPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
L K D + E H ++ GK +C K P C CP+ C
Sbjct: 171 EKNLPK-DLKIYKEYHALIVELGKHYCKKKNPVCEKCPLHNLC 212
>gi|337266339|ref|YP_004610394.1| endonuclease III [Mesorhizobium opportunistum WSM2075]
gi|336026649|gb|AEH86300.1| endonuclease III [Mesorhizobium opportunistum WSM2075]
Length = 266
Score = 50.8 bits (120), Expect = 0.003, Method: Composition-based stats.
Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 27/161 (16%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
K+ + I+ G+ A + L+RDHG VP D+ + L+ G+G K+
Sbjct: 109 KVGDHIRTIGLWRNKAKNVIALSEALIRDHGGA-------VPDDR--DELVKLPGVGRKT 159
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
V + VDT++ RI RLG P + PE ++ LL++ P
Sbjct: 160 ANVVLNMAFGQHTMAVDTHIFRIGNRLGLAPGKT-PEQVEHGLLKIIP------------ 206
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
+ H+ +I G+ C KP+C AC + C+
Sbjct: 207 -----DEYMRHAHHWLILHGRYVCKARKPDCPACVIADICK 242
>gi|393796716|ref|ZP_10380080.1| DNA-(apurinic or apyrimidinic site) lyase [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 175
Score = 50.8 bits (120), Expect = 0.003, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 19/123 (15%)
Query: 494 PDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 553
PD E L+ G+G K+ CV + A PVD +V RI+ RLG V + PE +
Sbjct: 68 PDNL-EKLVELPGVGRKTANCVLVYAFDKPAIPVDIHVHRISNRLGLVNTKT-PEETEQE 125
Query: 554 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
L+ + P K W +++ + +G+ C P CN C ++ C+
Sbjct: 126 LMRIIP------KKFW-----------IDINDTFVMYGQNICKPISPMCNVCKIKNNCKF 168
Query: 614 FAS 616
+ +
Sbjct: 169 YKT 171
>gi|222099270|ref|YP_002533838.1| Endonuclease III [Thermotoga neapolitana DSM 4359]
gi|221571660|gb|ACM22472.1| Endonuclease III [Thermotoga neapolitana DSM 4359]
Length = 208
Score = 50.8 bits (120), Expect = 0.003, Method: Composition-based stats.
Identities = 47/161 (29%), Positives = 67/161 (41%), Gaps = 29/161 (18%)
Query: 455 NTIKERGMNNMLAGRIKDFLNRLVRDH-GSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVE 513
+ IKE GM A RI +V + G V PD +E LL G+G K+
Sbjct: 67 DLIKESGMYRQKAERIVKISKIIVEKYSGKV---------PDTLEE-LLRLPGVGRKTAN 116
Query: 514 CVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLC 573
V + A VDT+V RI+ RLGWV + PE + L L P + LW
Sbjct: 117 IVLWVGFRKPALAVDTHVHRISNRLGWVKTKT-PEETEKALKRLLP------EKLWG--- 166
Query: 574 KLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
++ M+ FG+ C P C C ++ C ++
Sbjct: 167 --------PINGSMVEFGRNVCRPVNPKCEDCFLKKHCEYY 199
>gi|387783942|ref|YP_006070025.1| putative endonuclease III (DNA-(apurinic or apyrimidinic site)
lyase) [Streptococcus salivarius JIM8777]
gi|338744824|emb|CCB95190.1| putative endonuclease III (DNA-(apurinic or apyrimidinic site)
lyase) [Streptococcus salivarius JIM8777]
Length = 214
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 64/147 (43%), Gaps = 19/147 (12%)
Query: 468 GRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPV 527
G K+ +++ +V + + VP K + L S G+G K+ V + V
Sbjct: 81 GLYKNKARNIIKTARAVLMNFDGQVP--KTHKELESLPGVGRKTANVVLAEVYGIPSIAV 138
Query: 528 DTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQM 587
DT+V R++ RL VP E ++ L++ K+ +R H++M
Sbjct: 139 DTHVSRVSKRLNIVPEDASVEEIEAELMK-----------------KIPKRDWIISHHRM 181
Query: 588 ITFGKVFCTKSKPNCNACPMRGECRHF 614
I FG+ C P C CP++ C+++
Sbjct: 182 IFFGRYHCLAKNPKCQTCPLQSYCKYY 208
>gi|332296597|ref|YP_004438520.1| HhH-GPD family protein [Thermodesulfobium narugense DSM 14796]
gi|332179700|gb|AEE15389.1| HhH-GPD family protein [Thermodesulfobium narugense DSM 14796]
Length = 221
Score = 50.8 bits (120), Expect = 0.004, Method: Composition-based stats.
Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 15/156 (9%)
Query: 451 NKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLK 510
+K+A IK G N+ A R+K+ ++ + R+ + E ++ + A+ +LL G+G +
Sbjct: 71 DKLAMFIKSVGYYNIKAKRLKNLISEIYRNFKKI--EEVKKLDLIDARRFLLGINGIGYE 128
Query: 511 SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP 570
+ + + L L + F +DT R W L+ L + E+Y Q +
Sbjct: 129 TADSILLYALEYPIFVIDTYTLR------W--LERLNIKFSGNKKEIY---HKSQDFFMK 177
Query: 571 RLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACP 606
L + E H ++ GK FC K KP+C CP
Sbjct: 178 NLPN-ETELFKEYHALIVKLGKEFC-KKKPDCKECP 211
>gi|193083940|gb|ACF09617.1| endonuclease III [uncultured marine crenarchaeote AD1000-325-A12]
Length = 212
Score = 50.8 bits (120), Expect = 0.004, Method: Composition-based stats.
Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 28/165 (16%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
AD+ + N IK G ++ A RIK+ RL ++ S VP + E LL+ G+
Sbjct: 66 ADIRNVKNIIKSTGYYSLKANRIKNTSKRLKNNYNS-------KVPDN--MEDLLTLDGV 116
Query: 508 GLKSVECVRLLTLH-HLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQK 566
G K+ V + + ++ VDT+V R++ RL PE +++ L+++ P K
Sbjct: 117 GRKTANIVLSVGFNKNVGIAVDTHVIRLSNRLKLTK-NTNPEKIEIDLIKILP------K 169
Query: 567 YLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
LW + L +I G+ C KP+C+ C + C
Sbjct: 170 ELWNKFSIL-----------LILHGRNICQAKKPDCSNCVLNDLC 203
>gi|342732970|ref|YP_004771809.1| endonuclease III [Candidatus Arthromitus sp. SFB-mouse-Japan]
gi|384456337|ref|YP_005668934.1| endonuclease III [Candidatus Arthromitus sp. SFB-mouse-Yit]
gi|417967782|ref|ZP_12608847.1| Endonuclease III [Candidatus Arthromitus sp. SFB-co]
gi|418015623|ref|ZP_12655188.1| endonuclease III [Candidatus Arthromitus sp. SFB-mouse-NYU]
gi|418373221|ref|ZP_12965312.1| Endonuclease III [Candidatus Arthromitus sp. SFB-mouse-SU]
gi|342330425|dbj|BAK57067.1| endonuclease III [Candidatus Arthromitus sp. SFB-mouse-Japan]
gi|345505958|gb|EGX28252.1| endonuclease III [Candidatus Arthromitus sp. SFB-mouse-NYU]
gi|346984682|dbj|BAK80358.1| endonuclease III [Candidatus Arthromitus sp. SFB-mouse-Yit]
gi|380340820|gb|EIA29370.1| Endonuclease III [Candidatus Arthromitus sp. SFB-co]
gi|380341610|gb|EIA30084.1| Endonuclease III [Candidatus Arthromitus sp. SFB-mouse-SU]
Length = 209
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 18/119 (15%)
Query: 496 KAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLL 555
+ ++ L++ G+G K+ V AF VD +V R++ R+G + P PE +L L+
Sbjct: 105 RTRDELITLPGVGRKTANVVISNCFGVQAFAVDVHVFRVSNRIG-IANSPTPEKTELDLM 163
Query: 556 ELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
+ +I + LW +C H+ +I G+ CT KPNC C + C+++
Sbjct: 164 K------NIDENLWT-IC----------HHTIIFHGRRCCTSRKPNCGECKISEYCKYY 205
>gi|291522888|emb|CBK81181.1| 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase
[Coprococcus catus GD/7]
Length = 271
Score = 50.8 bits (120), Expect = 0.004, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 482 GSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHL-AFPVDTNVGRI 534
G VDL W+ + KA+ LL G+G K +C+ L LHHL AFPVDT++ ++
Sbjct: 183 GEVDLAWISSLNYQKARAELLKLFGVGEKVADCICLFALHHLDAFPVDTHIRQV 236
>gi|418935954|ref|ZP_13489702.1| endonuclease III [Rhizobium sp. PDO1-076]
gi|375057344|gb|EHS53520.1| endonuclease III [Rhizobium sp. PDO1-076]
Length = 259
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 27/161 (16%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
K+ + IK G+ A + LV D GSV VP K +E L+ G+G K+
Sbjct: 102 KVRDYIKTIGLYRNKAKNVIALSRMLVDDFGSV-------VP--KTREELVKLPGVGRKT 152
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
V + VDT++ RIA R+ P + P++++ L+++ P
Sbjct: 153 ANVVMSMAFGIPTMAVDTHILRIANRIRLAPAK-TPDAIEDILMKIVP------------ 199
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
++ L+ H+ +I G+ C KP C C + C+
Sbjct: 200 -----KQYLFHAHHWLILHGRYCCKARKPECERCVIADICK 235
>gi|340782445|ref|YP_004749052.1| HhH-GPD family protein [Acidithiobacillus caldus SM-1]
gi|340556597|gb|AEK58351.1| HhH-GPD family protein [Acidithiobacillus caldus SM-1]
Length = 238
Score = 50.8 bits (120), Expect = 0.004, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 15/116 (12%)
Query: 498 KEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEL 557
+ LL G+G ++ + + L L VD R+A RLGW +
Sbjct: 117 RRKLLGVYGVGEETADSILLYALQRPISVVDAYTKRLAQRLGWA--------------DA 162
Query: 558 YPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
++Q + +L + D R ELH ++ GK +C +S+P C CP+ +CRH
Sbjct: 163 RVSYAALQSRMEAQLRRNDVRGRQELHALIVVHGKTYC-RSRPVCADCPLLRDCRH 217
>gi|108864224|gb|ABA92590.2| Endonuclease III-like protein 1, putative, expressed [Oryza sativa
Japonica Group]
Length = 362
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 87/207 (42%), Gaps = 38/207 (18%)
Query: 437 KDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDK 496
K LD +A+ D +AN IK G A + +++ + LE PD
Sbjct: 187 KGLLDPDAIVRTDEATLANLIKPVGFYQRKA--------KFIKEASKICLERFGGDIPDS 238
Query: 497 AKEYLLSFRGLGLKSVECVRLLTLHHL-AFPVDTNVGRIAVRLGWVPLQ------PLPES 549
E LL+ +G+G K V + + VDT+V RI+ RLGWV + PE
Sbjct: 239 LNE-LLALKGVGPKMAHLVMSIAWKNTQGICVDTHVHRISNRLGWVFREGTKQKTTTPEQ 297
Query: 550 LQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRG 609
++ L + P K W + L ++ FG+ CT +P C+ C +
Sbjct: 298 TRMSLEKWLP------KDEWEPINPL-----------LVGFGQTICTPLRPKCDMCGINN 340
Query: 610 ECRHFASAFASSRLALPGPEEKAIVSA 636
C SAF S + P P++K + S+
Sbjct: 341 IC---PSAFKES--SSPNPKQKKMRSS 362
>gi|406967816|gb|EKD92806.1| hypothetical protein ACD_28C00327G0009 [uncultured bacterium]
Length = 224
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 52/115 (45%), Gaps = 18/115 (15%)
Query: 499 EYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY 558
E L S G+GLKS V AFPVDT+V R+A R+G V H
Sbjct: 110 EDLTSLPGVGLKSAGVVLSQAFAIPAFPVDTHVFRVANRIGLV-----------HEKTRD 158
Query: 559 PVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
+++K L P+ C +D H Q+I G+ C KP C CP++ C +
Sbjct: 159 KTAYALEKTL-PQDCWID------FHLQLIFHGRKTCKSQKPRCYECPVKDLCEY 206
>gi|417961869|ref|ZP_12604193.1| Endonuclease III [Candidatus Arthromitus sp. SFB-2]
gi|380331928|gb|EIA22866.1| Endonuclease III [Candidatus Arthromitus sp. SFB-2]
Length = 155
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 18/119 (15%)
Query: 496 KAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLL 555
+ ++ L++ G+G K+ V AF VD +V R++ R+G + P PE +L L+
Sbjct: 51 RTRDELITLPGVGRKTANVVISNCFGVQAFAVDVHVFRVSNRIG-IANSPTPEKTELDLM 109
Query: 556 ELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
+ +I + LW +C H+ +I G+ CT KPNC C + C+++
Sbjct: 110 K------NIDENLWT-IC----------HHTIIFHGRRCCTSRKPNCGECKISEYCKYY 151
>gi|153853551|ref|ZP_01994931.1| hypothetical protein DORLON_00920 [Dorea longicatena DSM 13814]
gi|149753706|gb|EDM63637.1| endonuclease III [Dorea longicatena DSM 13814]
Length = 208
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 18/116 (15%)
Query: 499 EYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY 558
E LLS G+G K+ +R H + VDT+V RI+ RLG Q P+ ++ L++
Sbjct: 109 EDLLSLAGVGRKTANVIRGNIYHVPSVVVDTHVKRISNRLGLTKNQD-PDKIEQDLMKEL 167
Query: 559 PVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
P D L+ +H +ITFG+ C+ P C C ++ C+ +
Sbjct: 168 PE---------------DHWILWNIH--IITFGRTICSARSPKCEDCFLQKYCKEY 206
>gi|451947518|ref|YP_007468113.1| putative endonuclease III-like protein [Desulfocapsa sulfexigens
DSM 10523]
gi|451906866|gb|AGF78460.1| putative endonuclease III-like protein [Desulfocapsa sulfexigens
DSM 10523]
Length = 218
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 69/157 (43%), Gaps = 16/157 (10%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
++A I+ G N+ A R+K+ L +++ D +L + ++++E LL +G+G ++
Sbjct: 74 QLAEYIRPSGYYNIKARRLKNLL-QMISDKYEGELTYFLKDSLEESRENLLKVKGVGPET 132
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
+ + L F +DT R+ R V +LQ ++ P
Sbjct: 133 ADAILLYAAEKPVFVIDTYTHRVFSRHQLVEEDTDYFTLQQEFMDNLPE----------- 181
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMR 608
D E H ++ K FC K+KP C+ CP++
Sbjct: 182 ----DPVLFNEFHALIVAVAKEFCKKAKPRCSDCPLQ 214
>gi|429214593|ref|ZP_19205756.1| endonuclease III [Pseudomonas sp. M1]
gi|428154879|gb|EKX01429.1| endonuclease III [Pseudomonas sp. M1]
Length = 212
Score = 50.8 bits (120), Expect = 0.004, Method: Composition-based stats.
Identities = 43/171 (25%), Positives = 72/171 (42%), Gaps = 27/171 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
EA+ V+ ++ IK G+ N A + + L+ HGS VP ++ E L
Sbjct: 62 EAIYALGVDGLSEYIKTIGLYNSKAKNVIETCRILIEKHGS-------KVPENR--EDLE 112
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
+ G+G K+ V LA VDT++ R+A R P + + E ++ LL+ P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQLAMAVDTHIFRVANRTNIAPGKNVLE-VERKLLKFVP--- 168
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
+ L + H+ +I G+ C KP C +C + C +
Sbjct: 169 --------------REYLLDAHHWLILHGRYVCKARKPQCGSCRIEDLCEY 205
>gi|417960104|ref|ZP_12602758.1| Endonuclease III [Candidatus Arthromitus sp. SFB-1]
gi|380331776|gb|EIA22753.1| Endonuclease III [Candidatus Arthromitus sp. SFB-1]
Length = 209
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 18/119 (15%)
Query: 496 KAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLL 555
+ ++ L++ G+G K+ V AF VD +V R++ R+G + P PE +L L+
Sbjct: 105 RTRDELITLPGVGRKTANVVISNCFGVQAFAVDVHVFRVSNRIG-IANSPTPEKTELDLM 163
Query: 556 ELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
+ +I + LW +C H+ +I G+ CT KPNC C + C+++
Sbjct: 164 K------NIDENLWT-IC----------HHTIIFHGRRCCTSRKPNCGECKISEYCKYY 205
>gi|169831405|ref|YP_001717387.1| HhH-GPD family protein [Candidatus Desulforudis audaxviator MP104C]
gi|169638249|gb|ACA59755.1| HhH-GPD family protein [Candidatus Desulforudis audaxviator MP104C]
Length = 250
Score = 50.8 bits (120), Expect = 0.004, Method: Composition-based stats.
Identities = 45/181 (24%), Positives = 68/181 (37%), Gaps = 16/181 (8%)
Query: 437 KDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDK 496
+DSL E + ++ I+ N R+KD + D G D P
Sbjct: 71 RDSLSVEGILALPHAELGLLIRPTRYYNQKTQRLKDVCLVIREDFGG-DTGLFLQQEPGA 129
Query: 497 AKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLE 556
+ LL+ RG+G ++ + + L F +D RI RLG + LQ HL E
Sbjct: 130 LRRRLLAVRGIGKETADSILLYAAGRPVFVIDHYTHRILKRLGLAHGGESYDQLQ-HLFE 188
Query: 557 LYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFAS 616
+ L+ E H ++T G C K+ P C CP+ C H +
Sbjct: 189 AH--------------LPLNAALFNEYHALLVTHGHRLCLKTGPRCPECPLSDLCAHASQ 234
Query: 617 A 617
A
Sbjct: 235 A 235
>gi|146276253|ref|YP_001166412.1| endonuclease III [Rhodobacter sphaeroides ATCC 17025]
gi|145554494|gb|ABP69107.1| endonuclease III / DNA-(apurinic or apyrimidinic site) lyase
[Rhodobacter sphaeroides ATCC 17025]
Length = 214
Score = 50.8 bits (120), Expect = 0.004, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 61/138 (44%), Gaps = 26/138 (18%)
Query: 474 LNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGR 533
L+RL+ DH + +VP +A L S G+G K+ V + H A VDT++ R
Sbjct: 96 LSRLLVDH------YDGEVPASRAA--LQSLPGVGRKTANVVLNMWFHQPAMAVDTHIFR 147
Query: 534 IAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKV 593
+A R G P + + E+++ L + P ++ + W +I G+
Sbjct: 148 VANRTGIAPGRDV-EAVERALEDHVPAPFALHAHHW-----------------LILHGRY 189
Query: 594 FCTKSKPNCNACPMRGEC 611
C KP C CP+R C
Sbjct: 190 ICVARKPKCGICPIRDLC 207
>gi|407777228|ref|ZP_11124498.1| endonuclease III [Nitratireductor pacificus pht-3B]
gi|407300928|gb|EKF20050.1| endonuclease III [Nitratireductor pacificus pht-3B]
Length = 248
Score = 50.8 bits (120), Expect = 0.004, Method: Composition-based stats.
Identities = 45/175 (25%), Positives = 75/175 (42%), Gaps = 30/175 (17%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
++ N I+ G+ A + L+ DHGS +VP ++ E L++ G+G K+
Sbjct: 95 EVGNHIRTIGLWRNKAKNVIALSEALIHDHGS-------EVPGNR--EALVTLPGVGRKT 145
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
V + VDT++ RI RLG P + PE ++ L+ + P P
Sbjct: 146 ANVVLNMAFGQPTMAVDTHILRIGNRLGLAPGKT-PEQVEDTLVHIIP----------PE 194
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALP 626
+ H+ +I G+ C KP+C AC + C+ SA +S + P
Sbjct: 195 FMR-------HAHHWLILHGRYVCKARKPDCPACVIADICK---SAEKTSEMPAP 239
>gi|451812331|ref|YP_007448785.1| endonuclease III [Candidatus Kinetoplastibacterium galatii TCC219]
gi|451778233|gb|AGF49181.1| endonuclease III [Candidatus Kinetoplastibacterium galatii TCC219]
Length = 210
Score = 50.8 bits (120), Expect = 0.004, Method: Composition-based stats.
Identities = 43/163 (26%), Positives = 72/163 (44%), Gaps = 27/163 (16%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
K+ N IK+ G+ + A I + +V + G VP +E L S G+G K+
Sbjct: 72 KMENLIKKVGLYHTKARNILKTCDLIVNEFGG-------KVP--NTREELESLPGVGRKT 122
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
V + + VDT+V R++ R G + P ++ L++ P +KYL
Sbjct: 123 SNVVLNIAFNQPTIAVDTHVFRVSNRTG-IAKGKNPLDVEKELVKNVP-----EKYL--- 173
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
+ H+ +I FG+ C K KP CN C ++ C ++
Sbjct: 174 ---------HNAHHLLILFGRYICIKRKPKCNQCIIKDLCEYY 207
>gi|195437932|ref|XP_002066893.1| GK24310 [Drosophila willistoni]
gi|194162978|gb|EDW77879.1| GK24310 [Drosophila willistoni]
Length = 351
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 54/121 (44%), Gaps = 22/121 (18%)
Query: 494 PDKAKEYLLSFRGLGLKSVECVRLLTLHHL-AFPVDTNVGRIAVRLGWV--PLQPLPESL 550
PD K+ L+ G+G K + H + VD +V RI+ RLGW+ P + PE
Sbjct: 237 PDNVKD-LIGLPGVGPKMAHICMSVAWHKITGIGVDVHVHRISNRLGWLKTPTKE-PEQT 294
Query: 551 QLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGE 610
+L L + P K LW E+++ + FG+ CT KPNC C R
Sbjct: 295 RLGLEKWLP------KSLW-----------SEVNHLFVGFGQTICTPVKPNCAQCLNRDV 337
Query: 611 C 611
C
Sbjct: 338 C 338
>gi|300779992|ref|ZP_07089848.1| DNA-(apurinic or apyrimidinic site) lyase [Corynebacterium
genitalium ATCC 33030]
gi|300534102|gb|EFK55161.1| DNA-(apurinic or apyrimidinic site) lyase [Corynebacterium
genitalium ATCC 33030]
Length = 275
Score = 50.8 bits (120), Expect = 0.004, Method: Composition-based stats.
Identities = 52/206 (25%), Positives = 86/206 (41%), Gaps = 30/206 (14%)
Query: 433 PEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDV 492
PE + D + A+V++IA I+ G AG +K LV HG DV
Sbjct: 87 PELFRRYPDAASYAAANVDEIAEIIRPTGFFRAKAGHLKGIGEALVDKHGG-------DV 139
Query: 493 PPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPL-PESLQ 551
P A E L+ G+G K+ VR VDT+ R+ R+ + P +++
Sbjct: 140 P--TAIEDLVKLPGVGRKTAHVVRGNAFGMPGLTVDTHFQRLVHRMMLIDASITDPVAIE 197
Query: 552 LHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
+ + I+K W T++ +++I G+ C KP C ACP+ +C
Sbjct: 198 ------HAIASVIEKREW---------TMFS--HRIIFHGRRVCHARKPACGACPVAFDC 240
Query: 612 RHFASA---FASSRLALPGPEEKAIV 634
F + + + + GPE + I+
Sbjct: 241 PSFGTGPVEWDEAEKLVTGPEREHIL 266
>gi|150398564|ref|YP_001329031.1| endonuclease III [Sinorhizobium medicae WSM419]
gi|150030079|gb|ABR62196.1| endonuclease III [Sinorhizobium medicae WSM419]
Length = 236
Score = 50.8 bits (120), Expect = 0.004, Method: Composition-based stats.
Identities = 38/161 (23%), Positives = 68/161 (42%), Gaps = 27/161 (16%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
++ + IK G+ A + +L+ D G +VP + +E L++ G+G K+
Sbjct: 79 RVRDYIKTIGLYRNKAKNVIALSRKLITDFGG-------EVP--RTREELVTLPGVGRKT 129
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
V + VDT++ RIA R+ P + P+ ++ HLL + P
Sbjct: 130 ANVVLSMAFGEATIAVDTHIFRIAHRIRIAPGKT-PDEVEAHLLRVIP------------ 176
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
+ LY H+ +I G+ C +P C C + C+
Sbjct: 177 -----EHRLYHAHHWLILHGRYVCKARRPECERCVIADICK 212
>gi|153001566|ref|YP_001367247.1| A/G-specific adenine glycosylase [Shewanella baltica OS185]
gi|151366184|gb|ABS09184.1| A/G-specific adenine glycosylase [Shewanella baltica OS185]
Length = 363
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 25/120 (20%)
Query: 499 EYLLSFRGLGLKSVECVRLLTL--HHLAFPV-DTNVGRIAVRLGWVPLQPLPESLQLHLL 555
E +L+ G+G + V L+L HH P+ D NV R+ R G + P ++++ L
Sbjct: 110 EQVLALPGIGRSTAGAVLSLSLGQHH---PILDGNVKRVLARHGAIAGWPGQKTVEAQLW 166
Query: 556 EL---YPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
+L Y + IQKY + M+ G CT+SKPNC ACP+ +C+
Sbjct: 167 QLTDTYTPQQDIQKY----------------NQAMMDIGASICTRSKPNCAACPVAIDCK 210
>gi|227823996|ref|YP_002827969.1| endonuclease III [Sinorhizobium fredii NGR234]
gi|227342998|gb|ACP27216.1| putative endonuclease III protein [Sinorhizobium fredii NGR234]
Length = 317
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 27/161 (16%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
K+ + IK G+ A + RL+ D G VP K +E L++ G+G K+
Sbjct: 160 KLRDHIKTIGLYRNKAKNVIALSERLIADFGGA-------VP--KTREELMTLPGVGRKT 210
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
V + VDT++ RIA R+ P + P+ ++ L+ + P KYL
Sbjct: 211 ANVVLQMAFGQSTIAVDTHLFRIANRIRLAPGK-TPDEVEAKLMRVIP-----PKYL--- 261
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
Y H+ +I G+ C +P C C + C+
Sbjct: 262 ---------YHAHHWLILHGRYVCKARRPECERCIIADICK 293
>gi|373950389|ref|ZP_09610350.1| A/G-specific adenine glycosylase [Shewanella baltica OS183]
gi|386323773|ref|YP_006019890.1| A/G-specific adenine glycosylase [Shewanella baltica BA175]
gi|333817918|gb|AEG10584.1| A/G-specific adenine glycosylase [Shewanella baltica BA175]
gi|373886989|gb|EHQ15881.1| A/G-specific adenine glycosylase [Shewanella baltica OS183]
Length = 363
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 25/120 (20%)
Query: 499 EYLLSFRGLGLKSVECVRLLTL--HHLAFPV-DTNVGRIAVRLGWVPLQPLPESLQLHLL 555
E +L+ G+G + V L+L HH P+ D NV R+ R G + P ++++ L
Sbjct: 110 EQVLALPGIGRSTAGAVLSLSLGQHH---PILDGNVKRVLARHGAIAGWPGQKTVEAQLW 166
Query: 556 EL---YPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
+L Y + IQKY + M+ G CT+SKPNC ACP+ +C+
Sbjct: 167 QLTDTYTPQQDIQKY----------------NQAMMDIGASICTRSKPNCAACPVAIDCK 210
>gi|407972954|ref|ZP_11153867.1| endonuclease III [Nitratireductor indicus C115]
gi|407431725|gb|EKF44396.1| endonuclease III [Nitratireductor indicus C115]
Length = 246
Score = 50.8 bits (120), Expect = 0.004, Method: Composition-based stats.
Identities = 43/177 (24%), Positives = 72/177 (40%), Gaps = 32/177 (18%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
K+ + I+ G+ A + L+RDHGS VP +++ L + G+G K+
Sbjct: 94 KVGDHIRTIGLWRNKAKNVIALSEALIRDHGS-------QVP--DSRDALTTLPGVGRKT 144
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
V + VDT++ RI R+G P + PE ++ L+ + P
Sbjct: 145 ANVVLNMAFGQPTMAVDTHILRIGNRIGLAPGKT-PEQVEAILVRIIPA----------- 192
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGP 628
+ H+ +I G+ C KP+C AC + C+ A A+P P
Sbjct: 193 ------EYMRHAHHWLILHGRYVCKARKPDCPACVIADICKS-----AEKTTAIPAP 238
>gi|307273846|ref|ZP_07555068.1| endonuclease III [Enterococcus faecalis TX0855]
gi|306509531|gb|EFM78579.1| endonuclease III [Enterococcus faecalis TX0855]
Length = 215
Score = 50.8 bits (120), Expect = 0.004, Method: Composition-based stats.
Identities = 47/170 (27%), Positives = 70/170 (41%), Gaps = 26/170 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
EA+ A V +I IK G+ A IK +L+ +VP + ++ L+
Sbjct: 63 EALAAAPVEEIIAKIKTIGLYRNKAKNIKACAQQLLERFNG-------EVP--QTRDELV 113
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
S G+G K+ V AF VDT+V R++ RL L ++ L+ P
Sbjct: 114 SLPGVGRKTANVVMGDAFGEPAFAVDTHVERVSKRLRICKLNANVTEVEQTLMRKVP--- 170
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
K LW + H+ MI FG+ C P C ACP+ C+
Sbjct: 171 ---KELWVKT-----------HHTMIFFGRYHCLAIAPKCEACPLLYMCQ 206
>gi|119719059|ref|YP_919554.1| HhH-GPD family protein [Thermofilum pendens Hrk 5]
gi|119524179|gb|ABL77551.1| HhH-GPD family protein [Thermofilum pendens Hrk 5]
Length = 236
Score = 50.4 bits (119), Expect = 0.004, Method: Composition-based stats.
Identities = 43/177 (24%), Positives = 76/177 (42%), Gaps = 20/177 (11%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
E +R A ++++A I+ G+ A IK + L +G D+ L ++ L
Sbjct: 77 EKIRKAGLSELAEAIRPAGLQEQKAKAIKQVASLLYEKYG-CDIGKLLSRGVEEVIRELK 135
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
G+G K+++ V L + P+DT+V R++VRLG P S Y ++
Sbjct: 136 QIEGIGDKTID-VLLANYGYPVLPIDTHVRRVSVRLGLAR----PGS--------YRAMQ 182
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFA 619
+ +LD H +I G+ C P C+ CP+ C ++ ++ A
Sbjct: 183 KSLHGFFREEARLDA------HLYLIKLGRTLCRAKNPLCDECPLSDLCCYYRTSRA 233
>gi|283796626|ref|ZP_06345779.1| endonuclease III [Clostridium sp. M62/1]
gi|291076049|gb|EFE13413.1| endonuclease III [Clostridium sp. M62/1]
Length = 271
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 18/113 (15%)
Query: 499 EYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY 558
E L S G+G K+ +R + + VDT+V RI+ +LG + PE ++ L+++
Sbjct: 117 EELTSLAGVGRKTANVIRGNIYNEPSIVVDTHVKRISRKLGLTKEED-PEKIEYALMKVL 175
Query: 559 PVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
P D L+ +H +IT G+ CT P C C +R +C
Sbjct: 176 P---------------RDHWILWNIH--IITLGRTICTARNPRCRECFLRYDC 211
>gi|225390500|ref|ZP_03760224.1| hypothetical protein CLOSTASPAR_04255 [Clostridium asparagiforme
DSM 15981]
gi|225043429|gb|EEG53675.1| hypothetical protein CLOSTASPAR_04255 [Clostridium asparagiforme
DSM 15981]
Length = 293
Score = 50.4 bits (119), Expect = 0.004, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 3/68 (4%)
Query: 473 FLNRLVRDH--GSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHL-AFPVDT 529
+++RL +D G +DL+ L + +A EYL F G+G K CV L LHH+ AFPVDT
Sbjct: 174 YIHRLSQDAAAGILDLKNLETMEYGQAMEYLTGFYGIGKKVANCVCLFGLHHIEAFPVDT 233
Query: 530 NVGRIAVR 537
+ +I +R
Sbjct: 234 WIEKILLR 241
>gi|323485385|ref|ZP_08090733.1| hypothetical protein HMPREF9474_02484 [Clostridium symbiosum
WAL-14163]
gi|323694147|ref|ZP_08108326.1| endonuclease III [Clostridium symbiosum WAL-14673]
gi|355625585|ref|ZP_09048320.1| endonuclease III [Clostridium sp. 7_3_54FAA]
gi|323401248|gb|EGA93598.1| hypothetical protein HMPREF9474_02484 [Clostridium symbiosum
WAL-14163]
gi|323501864|gb|EGB17747.1| endonuclease III [Clostridium symbiosum WAL-14673]
gi|354821278|gb|EHF05669.1| endonuclease III [Clostridium sp. 7_3_54FAA]
Length = 218
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 69/164 (42%), Gaps = 27/164 (16%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
AD+ ++ I G +M A I LV + G +VP + E L S G+
Sbjct: 75 ADLKELEKDIHSTGFYHMKAKNIIACCKSLVENFGG-------EVP--RTLEELTSLAGV 125
Query: 508 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 567
G K+ +R + + VDT+V RI+ +LG + PE ++ L+++ P I
Sbjct: 126 GRKTANVIRGNIYNEPSIVVDTHVKRISRKLGLTKEED-PEKIEYDLMKVLPKEHWI--- 181
Query: 568 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
LW + Q+IT G+ C P C C +R C
Sbjct: 182 LW--------------NIQIITLGRSICIARSPKCGECFLRENC 211
>gi|388543463|ref|ZP_10146754.1| endonuclease III [Pseudomonas sp. M47T1]
gi|388278775|gb|EIK98346.1| endonuclease III [Pseudomonas sp. M47T1]
Length = 212
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 27/168 (16%)
Query: 444 AVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLS 503
A+ V ++ IK G+ N A + + LV HG +VP D+ E L +
Sbjct: 63 AIYALGVEGLSEYIKTIGLYNSKARNVIEACRMLVELHGG-------EVPQDR--ESLEA 113
Query: 504 FRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLES 563
G+G K+ V L VDT++ R++ R G P + + E ++ +LL+ P
Sbjct: 114 LPGVGRKTANVVLNTAFRQLTMAVDTHIFRVSNRTGIAPGKNVIE-VEKNLLKFVP---- 168
Query: 564 IQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
++YL LD H+ +I G+ C KP C +C + C
Sbjct: 169 -RQYL------LDS------HHWLILHGRYVCQARKPRCGSCRIEDLC 203
>gi|325969490|ref|YP_004245682.1| iron-sulfur cluster loop [Vulcanisaeta moutnovskia 768-28]
gi|323708693|gb|ADY02180.1| iron-sulfur cluster loop [Vulcanisaeta moutnovskia 768-28]
Length = 307
Score = 50.4 bits (119), Expect = 0.004, Method: Composition-based stats.
Identities = 47/157 (29%), Positives = 71/157 (45%), Gaps = 30/157 (19%)
Query: 470 IKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL----SFRGLGLKSVECVRLLTLHHLAF 525
I++ ++RL G D P + K YLL RGL LK + +
Sbjct: 154 IEELIDRLSMMAGYED--------PVRKKAYLLIKFLVLRGL-LK-------IKPQEMKL 197
Query: 526 PVDTNVGRIAVRLGWVPLQPLPESL---QLHL-LELYPVLESIQKYLWP---RLCKLDQR 578
P+D ++ RIA RLG V L+ L +HL EL L + W R+ KLD
Sbjct: 198 PIDNHLTRIAYRLGIVRLEDWVLELMRRDMHLSRELDIELRLAVRDAWDAVIRVSKLDPI 257
Query: 579 TLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFA 615
+ + +++ G+ C + KP C+ CP+RG C +A
Sbjct: 258 AIDDFLWRL---GRTICIRDKPQCDKCPLRGLCSAYA 291
>gi|307595236|ref|YP_003901553.1| iron-sulfur cluster loop [Vulcanisaeta distributa DSM 14429]
gi|307550437|gb|ADN50502.1| iron-sulfur cluster loop [Vulcanisaeta distributa DSM 14429]
Length = 307
Score = 50.4 bits (119), Expect = 0.004, Method: Composition-based stats.
Identities = 40/129 (31%), Positives = 62/129 (48%), Gaps = 14/129 (10%)
Query: 494 PDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESL--- 550
P + K YLL + L L+ + V+ + P+D ++ RIA RLG V L+ L
Sbjct: 170 PVRKKAYLL-IKFLVLRGLLKVKQ---QEIKLPIDNHLTRIAYRLGIVKLEDWVLELMRR 225
Query: 551 QLHL-LELYPVLESIQKYLWP---RLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACP 606
+H EL L + W R+ KLD L + ++ FG+ C + KP C+ CP
Sbjct: 226 DVHFSRELDVELRLAVRDAWDAVIRIGKLDPIALDDFLWR---FGRTICVRDKPQCDKCP 282
Query: 607 MRGECRHFA 615
++G C +A
Sbjct: 283 LKGVCSAYA 291
>gi|240139469|ref|YP_002963944.1| hypothetical protein MexAM1_META1p2915 [Methylobacterium extorquens
AM1]
gi|418059134|ref|ZP_12697091.1| iron-sulfur cluster loop [Methylobacterium extorquens DSM 13060]
gi|240009441|gb|ACS40667.1| hypothetical protein MexAM1_META1p2915 [Methylobacterium extorquens
AM1]
gi|373567329|gb|EHP93301.1| iron-sulfur cluster loop [Methylobacterium extorquens DSM 13060]
Length = 254
Score = 50.4 bits (119), Expect = 0.004, Method: Composition-based stats.
Identities = 44/172 (25%), Positives = 75/172 (43%), Gaps = 14/172 (8%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
DW + A V +I TI + A RIK L + G++ L++L D+ ++A+ +
Sbjct: 86 DWTEIEAASVEEIEATIHGVTWPELKAPRIKAVLAAVQERVGALTLDFLGDMSVNEARGW 145
Query: 501 LLSFRGLGLK-SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
L + G+G K S + TL A PVD++ R+A R G + ++ + +
Sbjct: 146 LEAIPGIGPKTSAAVLSFSTLRMPALPVDSHHHRVAQRTGLI-------GAKVDVGPSHA 198
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
VL + W + LY+ H ++ G+ C P C C + C
Sbjct: 199 VLRAQLPDDW------SAQKLYDNHEVLMLHGQRVCFHRSPACGRCVLLDIC 244
>gi|218295273|ref|ZP_03496109.1| endonuclease III [Thermus aquaticus Y51MC23]
gi|218244476|gb|EED11001.1| endonuclease III [Thermus aquaticus Y51MC23]
Length = 217
Score = 50.4 bits (119), Expect = 0.004, Method: Composition-based stats.
Identities = 45/171 (26%), Positives = 71/171 (41%), Gaps = 27/171 (15%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
D +A+ A ++ I++ G+ A + RL+ D+G +VP DK E
Sbjct: 69 DAKALAAATPEEVEPYIRKIGLYRTKARNLVALARRLLEDYGG-------EVPRDK--EA 119
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
L+ G+G K+ V VDT+V R+A RL + PE + L L+P
Sbjct: 120 LMRLPGVGWKTATVVLGAAFGVPGIAVDTHVARLARRLCLSEART-PEKIAEDLEALFP- 177
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
K W +H+ ++ G+ CT +P C ACP+ C
Sbjct: 178 -----KDHW-----------VFVHHALVLHGRYVCTARRPRCGACPLAPHC 212
>gi|418562457|ref|ZP_13126914.1| endonuclease III [Staphylococcus aureus subsp. aureus 21262]
gi|371973561|gb|EHO90909.1| endonuclease III [Staphylococcus aureus subsp. aureus 21262]
Length = 219
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 70/170 (41%), Gaps = 28/170 (16%)
Query: 453 IANTIKERGMNNMLAGRIKDFLNRLV-RDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
+ N I+ G+ A IK L+ + +G + P KE L S G+G K+
Sbjct: 73 LMNDIRSIGLYRNKAKNIKKLCQSLIDQFNGEI---------PQTHKE-LESLAGVGRKT 122
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
V + + VDT+V R++ RLG + ++ L + P + W R
Sbjct: 123 ANVVMSVAFDEPSLAVDTHVERVSKRLGINRWKDNVRQVEDRLCSVIP------RDRWNR 176
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASS 621
H+Q+I FG+ C KP C+ CP+ ECR + +S
Sbjct: 177 -----------SHHQLIFFGRYHCLARKPKCDICPLLEECREGQKRYKAS 215
>gi|169827624|ref|YP_001697782.1| endonuclease III [Lysinibacillus sphaericus C3-41]
gi|168992112|gb|ACA39652.1| Probable endonuclease III [Lysinibacillus sphaericus C3-41]
Length = 220
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 70/163 (42%), Gaps = 26/163 (15%)
Query: 450 VNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGL 509
+ ++ I+ G+ A I+ RL+ ++ ++P +E L++ G+G
Sbjct: 70 LEELQQDIRSIGLYRNKAKNIQALCQRLLDEYNG-------EIPA--TREALVTLPGVGR 120
Query: 510 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 569
K+ V + A VDT+V R++ RLG + + V E+I K
Sbjct: 121 KTANVVLSVAFDIPALAVDTHVERVSKRLGLCRWKD----------SVLEVEETIMK--- 167
Query: 570 PRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
K + H+Q+I FG+ C P C+ACP+ +CR
Sbjct: 168 ----KTPMDKWSKTHHQLIFFGRYHCKAQNPGCHACPLLSDCR 206
>gi|157826170|ref|YP_001493890.1| endonuclease III [Rickettsia akari str. Hartford]
gi|157800128|gb|ABV75382.1| endonuclease III [Rickettsia akari str. Hartford]
Length = 228
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 71/167 (42%), Gaps = 27/167 (16%)
Query: 457 IKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVR 516
IK G+ N A I L+ ++ + VP D + L+ G+G K+ V+
Sbjct: 76 IKSIGLFNSKAKNIIALCKILISNYQA-------SVPNDF--QELVKLPGVGRKTANVVQ 126
Query: 517 LLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLD 576
VDT+V R+A R+G PE ++ LL++ +D
Sbjct: 127 NCLFGMPTMAVDTHVFRVAKRIGLAKGNS-PEIVEKELLQI-----------------ID 168
Query: 577 QRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRL 623
+ L H+ +I G+ C KP+C+ CP++ +C ++ + + +
Sbjct: 169 GKWLTHAHHWLILHGRYICKARKPDCDICPIKDDCEYYINKLTVNEI 215
>gi|398989592|ref|ZP_10692829.1| endonuclease III [Pseudomonas sp. GM24]
gi|399015076|ref|ZP_10717352.1| endonuclease III [Pseudomonas sp. GM16]
gi|398109087|gb|EJL99026.1| endonuclease III [Pseudomonas sp. GM16]
gi|398147214|gb|EJM35929.1| endonuclease III [Pseudomonas sp. GM24]
Length = 212
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 71/170 (41%), Gaps = 27/170 (15%)
Query: 444 AVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLS 503
A+ V ++ IK G+ N A + + LV HGSV VP + +E L +
Sbjct: 63 AIHALGVEGLSEYIKTIGLYNSKAKNVIETCRLLVERHGSV-------VP--QTREELEA 113
Query: 504 FRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLES 563
G+G K+ V L VDT++ R++ R G P + + E ++ L++ P
Sbjct: 114 LPGVGRKTANVVLNTAFRQLTMAVDTHIFRVSNRTGIAPGKNVVE-VENKLMKFVP---- 168
Query: 564 IQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
+ L + H+ +I G+ C KP C +C + C +
Sbjct: 169 -------------KEFLLDSHHWLILHGRYVCLARKPRCGSCRIEDLCEY 205
>gi|320335030|ref|YP_004171741.1| endonuclease III [Deinococcus maricopensis DSM 21211]
gi|319756319|gb|ADV68076.1| endonuclease III [Deinococcus maricopensis DSM 21211]
Length = 224
Score = 50.4 bits (119), Expect = 0.005, Method: Composition-based stats.
Identities = 46/174 (26%), Positives = 74/174 (42%), Gaps = 30/174 (17%)
Query: 438 DSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKA 497
D+ A R DV TI G+ A + LV HG DVP D
Sbjct: 72 DAFALAAARVEDVEGFIRTI---GLYRNKARNLVALAGLLVERHGG-------DVPNDF- 120
Query: 498 KEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEL 557
+ +++ G G K+ V A VDT+VGR+A RLG+ + P+ +++ L L
Sbjct: 121 -DAVVALPGAGRKTANVVLSNAFGFPAIAVDTHVGRLARRLGFTA-ETNPDKVEVQLQRL 178
Query: 558 YPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
+P +++++ LH+ +I G+ C +P C+AC + C
Sbjct: 179 FPR----EQWVF-------------LHHALILHGRRVCLARRPVCSACALAAVC 215
>gi|223986376|ref|ZP_03636383.1| hypothetical protein HOLDEFILI_03694 [Holdemania filiformis DSM
12042]
gi|223961667|gb|EEF66172.1| hypothetical protein HOLDEFILI_03694 [Holdemania filiformis DSM
12042]
Length = 226
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 70/174 (40%), Gaps = 26/174 (14%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
EA+ A + I + I+ G+ + A I+ +V G V + + E L
Sbjct: 59 EALAEAPLEDIEDCIRRIGLYHNKAKSIQGLARGVVEQFGGVMPQTM---------EELT 109
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
S G+G KS + + A VDT+V R++ RLG P+ VLE
Sbjct: 110 SLPGVGRKSANVIMSVCFGMPAIAVDTHVERVSKRLGLAA----PKDT---------VLE 156
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFAS 616
+K + KL + H+ I FG+ FC P C CP CR + +
Sbjct: 157 VEKKLMR----KLPKAEWSHAHHLFIFFGRYFCKAKNPQCPDCPFTSFCREYKA 206
>gi|160876302|ref|YP_001555618.1| A/G-specific adenine glycosylase [Shewanella baltica OS195]
gi|378709502|ref|YP_005274396.1| A/G-specific adenine glycosylase [Shewanella baltica OS678]
gi|418024049|ref|ZP_12663033.1| A/G-specific adenine glycosylase [Shewanella baltica OS625]
gi|160861824|gb|ABX50358.1| A/G-specific adenine glycosylase [Shewanella baltica OS195]
gi|315268491|gb|ADT95344.1| A/G-specific adenine glycosylase [Shewanella baltica OS678]
gi|353536922|gb|EHC06480.1| A/G-specific adenine glycosylase [Shewanella baltica OS625]
Length = 363
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 25/120 (20%)
Query: 499 EYLLSFRGLGLKSVECVRLLTL--HHLAFPV-DTNVGRIAVRLGWVPLQPLPESLQLHLL 555
E +L+ G+G + V L+L HH P+ D NV R+ R G + P ++++ L
Sbjct: 110 EQVLALPGIGRSTAGAVLSLSLGQHH---PILDGNVKRVLARHGAIAGWPGQKTVEAQLW 166
Query: 556 EL---YPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
+L Y + IQKY + M+ G CT+SKPNC ACP+ +C+
Sbjct: 167 QLTDTYTPQQDIQKY----------------NQAMMDIGASICTRSKPNCAACPVAIDCK 210
>gi|322437279|ref|YP_004219491.1| iron-sulfur cluster loop [Granulicella tundricola MP5ACTX9]
gi|321165006|gb|ADW70711.1| iron-sulfur cluster loop [Granulicella tundricola MP5ACTX9]
Length = 241
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 76/172 (44%), Gaps = 17/172 (9%)
Query: 442 WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYL 501
WE +R A V +I T++ + A +K L + G + LE+L +K + +L
Sbjct: 69 WENLRDAAVAEIEQTLQIITFPEVKALWLKKDLMEITARCGELSLEFLAKYRTNKIRSWL 128
Query: 502 LSFRGLGLK-SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
F G+G K S V TL A VD++ R+ RLG P + + + ++
Sbjct: 129 EQFEGVGAKTSAAVVNFSTLRRRALCVDSHHLRVTQRLGLTPRADAAITEERLMRKIPAD 188
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMIT-FGKVFCTKSKPNCNACPMRGEC 611
++I KLD H+ +I G+ CT ++P+C CP+ C
Sbjct: 189 WDAI---------KLDD------HHSLIKKHGQELCTFAEPHCRRCPLLDMC 225
>gi|157826446|ref|YP_001495510.1| endonuclease III [Rickettsia bellii OSU 85-389]
gi|157801750|gb|ABV78473.1| Endonuclease III [Rickettsia bellii OSU 85-389]
Length = 213
Score = 50.4 bits (119), Expect = 0.005, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 18/119 (15%)
Query: 499 EYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY 558
E L+ G+G K+ V VDT+V R+A R+G + PE+++ LL++
Sbjct: 109 EELVKLPGVGRKTANVVLNCLFGLPTMAVDTHVFRVAKRIG-LAKGNTPEAVEKELLQI- 166
Query: 559 PVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASA 617
+D + L H+ +I G+ C KP+C CP++ C ++ SA
Sbjct: 167 ----------------IDGKWLSHAHHWLILHGRYICKARKPDCEICPIKEYCEYYKSA 209
>gi|126175241|ref|YP_001051390.1| A/G-specific adenine glycosylase [Shewanella baltica OS155]
gi|386341993|ref|YP_006038359.1| A/G-specific adenine glycosylase [Shewanella baltica OS117]
gi|125998446|gb|ABN62521.1| A/G-specific DNA-adenine glycosylase [Shewanella baltica OS155]
gi|334864394|gb|AEH14865.1| A/G-specific adenine glycosylase [Shewanella baltica OS117]
Length = 363
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 25/120 (20%)
Query: 499 EYLLSFRGLGLKSVECVRLLTL--HHLAFPV-DTNVGRIAVRLGWVPLQPLPESLQLHLL 555
E +L+ G+G + V L+L HH P+ D NV R+ R G + P ++++ L
Sbjct: 110 EQVLALPGIGRSTAGAVLSLSLGQHH---PILDGNVKRVLARHGAIAGWPGQKTVEAQLW 166
Query: 556 EL---YPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
+L Y + IQKY + M+ G CT+SKPNC ACP+ +C+
Sbjct: 167 QLTDTYTPQQDIQKY----------------NQAMMDIGASICTRSKPNCAACPVAIDCK 210
>gi|194697286|gb|ACF82727.1| unknown [Zea mays]
Length = 352
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 79/194 (40%), Gaps = 36/194 (18%)
Query: 440 LDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKE 499
LD +A+ D +AN IK G A + +++ + LE PD E
Sbjct: 180 LDPDAIVRTDETTLANLIKPVGFYQRKA--------QFIKEASKICLERFGGDIPDSLNE 231
Query: 500 YLLSFRGLGLKSVECVRLLTLHHL-AFPVDTNVGRIAVRLGWVPLQ------PLPESLQL 552
LL+ RG+G K V + + VDT+V RI+ RLGWV + PE ++
Sbjct: 232 -LLALRGVGPKMAHLVMSIAWKNTQGICVDTHVHRISNRLGWVFREGTRQKTTTPEQTRI 290
Query: 553 HLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
L + P K W + L ++ FG+ CT +P C+ C + C
Sbjct: 291 SLEKWLP------KDEWEPINPL-----------LVGFGQTICTPLRPKCDKCGINNIC- 332
Query: 613 HFASAFASSRLALP 626
SAF S +P
Sbjct: 333 --PSAFKESSSPIP 344
>gi|226293223|gb|EEH48643.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 519
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 25/128 (19%)
Query: 439 SLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGS--------------- 483
S+DW+ VR A + ++ + +K G+ + + IK L+ +V + G
Sbjct: 287 SVDWDKVRQATLEEVYDAMKAGGLGRVKSRYIKRILD-MVHEEGVARRNAMGMGGDVYQE 345
Query: 484 ---------VDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRI 534
+ L L + D+A + G+G+K+ CV L L F VDT+V R+
Sbjct: 346 GDGNGHEHILSLNHLHTLSKDEAMLEFTKYPGIGVKTAACVILFCLRQPCFAVDTHVVRL 405
Query: 535 AVRLGWVP 542
LGW+P
Sbjct: 406 CKWLGWLP 413
>gi|153808497|ref|ZP_01961165.1| hypothetical protein BACCAC_02791 [Bacteroides caccae ATCC 43185]
gi|423219425|ref|ZP_17205921.1| endonuclease III [Bacteroides caccae CL03T12C61]
gi|149128819|gb|EDM20036.1| endonuclease III [Bacteroides caccae ATCC 43185]
gi|392625320|gb|EIY19389.1| endonuclease III [Bacteroides caccae CL03T12C61]
Length = 225
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 62/132 (46%), Gaps = 19/132 (14%)
Query: 494 PDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQ-PLPESLQL 552
PD ++ L+ G+G K+ ++ + H A VDT+V R++ R+G VP P S++
Sbjct: 106 PDNMED-LIKLPGVGRKTANVIQSVVFHKAAMAVDTHVFRVSHRIGLVPDSCTTPFSVEK 164
Query: 553 HLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
L++ P ++ + H+ +I G+ C P C+ C ++ C+
Sbjct: 165 ELMKNIP-----------------EKLVPIAHHWLILHGRYVCQARTPKCDTCGLQMMCK 207
Query: 613 HFASAFASSRLA 624
+F + + ++ A
Sbjct: 208 YFCNTYKVTKEA 219
>gi|417647056|ref|ZP_12296905.1| endonuclease III [Staphylococcus epidermidis VCU144]
gi|329725405|gb|EGG61888.1| endonuclease III [Staphylococcus epidermidis VCU144]
Length = 219
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 68/161 (42%), Gaps = 28/161 (17%)
Query: 453 IANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSV 512
+ N I+ G+ A IK + L+ E P KE L S G+G K+
Sbjct: 73 LQNDIRSIGLYRNKAKNIKKLCHSLI--------EQFNGQIPQTHKE-LESLAGVGRKTA 123
Query: 513 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRL 572
V + + VDT+V R++ RLG + +S+ + + RL
Sbjct: 124 NVVMSVAFGEPSLAVDTHVERVSKRLG---INRWKDSV---------------RQVEDRL 165
Query: 573 CKLDQRTLY-ELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
C + R + + H+Q+I FG+ C KP C CP+ +CR
Sbjct: 166 CDIIPRDRWNKSHHQLIFFGRYHCLARKPKCEICPLLNDCR 206
>gi|104780422|ref|YP_606920.1| endonuclease III [Pseudomonas entomophila L48]
gi|95109409|emb|CAK14109.1| endonuclease III [Pseudomonas entomophila L48]
Length = 212
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 72/171 (42%), Gaps = 27/171 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
+A+ V +++ IK G+ N A + + LV H +VP + +E L
Sbjct: 62 QAIHALGVEGLSDYIKTIGLYNSKAKNVIETCRLLVEQHDG-------EVP--QTREALE 112
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
+ G+G K+ V LA VDT++ R++ R G P + + E ++ LL+ P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQLAMAVDTHIFRVSNRTGIAPGKTVLE-VEKKLLKFVP--- 168
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
+ L + H+ +I G+ C KP C +C + C +
Sbjct: 169 --------------KDYLLDAHHWLILHGRYVCQARKPRCGSCRIEDLCEY 205
>gi|449298566|gb|EMC94581.1| hypothetical protein BAUCODRAFT_73567 [Baudoinia compniacensis UAMH
10762]
Length = 452
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 58/142 (40%), Gaps = 36/142 (25%)
Query: 437 KDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRD---------------- 480
K S+DW+AVR A ++ I+ G+ + + I+ L +
Sbjct: 192 KGSVDWDAVRRAPQKEVFKAIERGGLADRKSKDIQAILQLAYEENQERKAALTAESANAT 251
Query: 481 ------------HGSVD--------LEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTL 520
H V+ L+ L + A E +LS+ G+G K+ CV L L
Sbjct: 252 AVGAEQEAESEKHAEVEKASQNIISLDHLHLLSTSAAIEKMLSYPGIGPKTASCVALFCL 311
Query: 521 HHLAFPVDTNVGRIAVRLGWVP 542
+F VDT+V R+ LGWVP
Sbjct: 312 QRPSFAVDTHVFRLCQYLGWVP 333
>gi|226499382|ref|NP_001151454.1| endonuclease III-like protein 1 [Zea mays]
gi|195646916|gb|ACG42926.1| endonuclease III-like protein 1 [Zea mays]
Length = 364
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 79/194 (40%), Gaps = 36/194 (18%)
Query: 440 LDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKE 499
LD +A+ D +AN IK G A + +++ + LE PD E
Sbjct: 192 LDPDAIVRTDETTLANLIKPVGFYQRKA--------QFIKEASKICLERFGGDIPDSLNE 243
Query: 500 YLLSFRGLGLKSVECVRLLTLHHL-AFPVDTNVGRIAVRLGWVPLQ------PLPESLQL 552
LL+ RG+G K V + + VDT+V RI+ RLGWV + PE ++
Sbjct: 244 -LLALRGVGPKMAHLVMSIAWKNTQGICVDTHVHRISNRLGWVFREGTRQKTTTPEQTRI 302
Query: 553 HLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
L + P K W + L ++ FG+ CT +P C+ C + C
Sbjct: 303 SLEKWLP------KDEWEPINPL-----------LVGFGQTICTPLRPKCDKCGINNLC- 344
Query: 613 HFASAFASSRLALP 626
SAF S +P
Sbjct: 345 --PSAFKESSSPIP 356
>gi|403238043|ref|ZP_10916629.1| endonuclease III [Bacillus sp. 10403023]
Length = 219
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 76/179 (42%), Gaps = 29/179 (16%)
Query: 434 EHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVP 493
E K D+ AV + ++ N I+ G+ A I+ L+ D+G + +P
Sbjct: 57 EKYKTPEDYLAV---SLEELQNDIRSIGLYRNKAKNIQKLCQMLLEDYGGI-------LP 106
Query: 494 PDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 553
D+ + L G+G K+ V + A VDT+V R++ RLG+ +
Sbjct: 107 QDR--DELTKLPGVGRKTANVVVSVAFGIPAIAVDTHVERVSKRLGFCRWKD-------- 156
Query: 554 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
VLE ++K L K+ + H++MI FG+ C P C CP+ CR
Sbjct: 157 -----SVLE-VEKTLMK---KVPKEEWSATHHRMIFFGRYHCKAQNPQCEICPLLEVCR 206
>gi|312143859|ref|YP_003995305.1| endonuclease III [Halanaerobium hydrogeniformans]
gi|311904510|gb|ADQ14951.1| endonuclease III [Halanaerobium hydrogeniformans]
Length = 216
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 54/121 (44%), Gaps = 19/121 (15%)
Query: 494 PDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 553
P K KE LL G+G K+ V AFPVDT+V R++ RL + PE +
Sbjct: 109 PHKRKE-LLKLAGVGRKTANVVLANAFDKAAFPVDTHVFRVSSRLALSSAKN-PEVTEKE 166
Query: 554 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
L EL P +KY W +LH+ +I G+ C P+C+ C C +
Sbjct: 167 LTELIP-----KKY-W-----------IDLHHWLIDHGRAICKAQNPDCDNCFCSHLCPY 209
Query: 614 F 614
+
Sbjct: 210 Y 210
>gi|448369885|ref|ZP_21556338.1| HhH-GPD family protein [Natrialba aegyptia DSM 13077]
gi|445650325|gb|ELZ03249.1| HhH-GPD family protein [Natrialba aegyptia DSM 13077]
Length = 276
Score = 50.4 bits (119), Expect = 0.005, Method: Composition-based stats.
Identities = 40/123 (32%), Positives = 52/123 (42%), Gaps = 22/123 (17%)
Query: 494 PDKAKEYLLSFRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVPLQPLPESLQL 552
P + +E LL RG+G K+ +CV L FPVDT+V RI RLG P E ++
Sbjct: 151 PGEVRETLLDVRGVGPKTADCVLLFAGGRGGVFPVDTHVHRIYRRLGIAPPDADHEDVR- 209
Query: 553 HLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC----NACPMR 608
E ++ + C H I FG+ CT KP C ACPM
Sbjct: 210 ---------EVVEDEVPTAKCGFG-------HTATIQFGRELCTARKPACLDDPEACPMA 253
Query: 609 GEC 611
C
Sbjct: 254 DIC 256
>gi|420184436|ref|ZP_14690545.1| endonuclease III [Staphylococcus epidermidis NIHLM040]
gi|394257087|gb|EJE02009.1| endonuclease III [Staphylococcus epidermidis NIHLM040]
Length = 219
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 68/161 (42%), Gaps = 28/161 (17%)
Query: 453 IANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSV 512
+ N I+ G+ A IK + L+ E P KE L S G+G K+
Sbjct: 73 LQNDIRSIGLYRNKAKNIKKLCHSLI--------EQFNGQIPQTHKE-LESLAGVGRKTA 123
Query: 513 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRL 572
V + + VDT+V R++ RLG + +S+ + + RL
Sbjct: 124 NVVMSVAFGEPSLAVDTHVERVSKRLG---INRWKDSV---------------RQVEDRL 165
Query: 573 CKLDQRTLY-ELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
C + R + + H+Q+I FG+ C KP C CP+ +CR
Sbjct: 166 CDIIPRDRWNKSHHQLIFFGRYHCLARKPKCEICPLLNDCR 206
>gi|307352991|ref|YP_003894042.1| endonuclease III [Methanoplanus petrolearius DSM 11571]
gi|307156224|gb|ADN35604.1| endonuclease III [Methanoplanus petrolearius DSM 11571]
Length = 215
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 71/167 (42%), Gaps = 36/167 (21%)
Query: 453 IANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSV 512
+ IK+ G A I + L D G +VP + E L++ G+G K+
Sbjct: 75 VETIIKKTGFFRAKAKNIIESSKILCSDFGG-------EVP--RTMEELVTLPGVGRKTA 125
Query: 513 ECVRLLTLHHL-----AFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 567
V L+H VDT+V R++ R+G P +++ L L+P K
Sbjct: 126 NIV----LNHAFGIDEGIAVDTHVKRVSWRIGLTD-NTDPVKIEMDLTALFP------KD 174
Query: 568 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
W ++ +Y +I+ G+ CT KP+C C ++ CR+F
Sbjct: 175 AWGKM-----------NYLLISHGRAICTARKPDCERCVIKDFCRYF 210
>gi|332559505|ref|ZP_08413827.1| Endonuclease III / DNA-(Apurinic or apyrimidinic site) lyase
[Rhodobacter sphaeroides WS8N]
gi|332277217|gb|EGJ22532.1| Endonuclease III / DNA-(Apurinic or apyrimidinic site) lyase
[Rhodobacter sphaeroides WS8N]
Length = 214
Score = 50.4 bits (119), Expect = 0.005, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 61/138 (44%), Gaps = 26/138 (18%)
Query: 474 LNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGR 533
L+RL+ DH + +VP +A L S G+G K+ V + H A VDT++ R
Sbjct: 96 LSRLLVDH------YDGEVPSSRAA--LQSLPGVGRKTANVVLNMWFHQPAMAVDTHIFR 147
Query: 534 IAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKV 593
+A R G P + + E+++ L + P ++ + W +I G+
Sbjct: 148 VANRTGIAPGRDV-EAVERALEDHVPAPFALHAHHW-----------------LILHGRY 189
Query: 594 FCTKSKPNCNACPMRGEC 611
C KP C CP+R C
Sbjct: 190 ICVARKPRCGICPIRDLC 207
>gi|312870016|ref|ZP_07730153.1| endonuclease III [Lactobacillus oris PB013-T2-3]
gi|417885775|ref|ZP_12529926.1| endonuclease III [Lactobacillus oris F0423]
gi|311094413|gb|EFQ52720.1| endonuclease III [Lactobacillus oris PB013-T2-3]
gi|341594694|gb|EGS37378.1| endonuclease III [Lactobacillus oris F0423]
Length = 213
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 68/156 (43%), Gaps = 28/156 (17%)
Query: 457 IKERGMNNMLAGRIKDFLNRLVRD-HGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECV 515
IK G+ + A + + +LV D +G V P KE L S G+G K + V
Sbjct: 77 IKRLGLYHNKAKYLVNCARKLVTDFNGGV---------PQTLKE-LTSLPGVGRKVADVV 126
Query: 516 RLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKL 575
AFPVDT+V R+A RL VP + +++ L+E P K+L
Sbjct: 127 LAECFTIPAFPVDTHVSRVARRLAMVPPKASLLAIEKKLMEAVPE----DKWL------- 175
Query: 576 DQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
+ H+ MI +G+ C P C+ CP+ C
Sbjct: 176 ------DAHHSMIFWGRYRCMARNPRCSDCPLLPMC 205
>gi|398850623|ref|ZP_10607324.1| endonuclease III [Pseudomonas sp. GM80]
gi|398248446|gb|EJN33860.1| endonuclease III [Pseudomonas sp. GM80]
Length = 212
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 71/170 (41%), Gaps = 27/170 (15%)
Query: 444 AVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLS 503
A+ V ++ IK G+ N A + + LV HGS +VP + +E L +
Sbjct: 63 AIHALGVEGLSEYIKTIGLYNSKAKNVIETCRLLVERHGS-------EVP--QTREELEA 113
Query: 504 FRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLES 563
G+G K+ V L VDT++ R++ R G P + + E ++ L++ P
Sbjct: 114 LPGVGRKTANVVLNTAFRQLTMAVDTHIFRVSNRTGIAPGKNVVE-VEKKLMKFVP---- 168
Query: 564 IQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
+ L + H+ +I G+ C KP C +C + C +
Sbjct: 169 -------------KEFLLDSHHWLILHGRYVCLARKPRCGSCRIEDLCEY 205
>gi|27468058|ref|NP_764695.1| endonuclease-like protein [Staphylococcus epidermidis ATCC 12228]
gi|57866952|ref|YP_188599.1| endonuclease III [Staphylococcus epidermidis RP62A]
gi|293366579|ref|ZP_06613256.1| endonuclease III [Staphylococcus epidermidis M23864:W2(grey)]
gi|417659749|ref|ZP_12309349.1| endonuclease III [Staphylococcus epidermidis VCU045]
gi|417908579|ref|ZP_12552336.1| endonuclease III [Staphylococcus epidermidis VCU037]
gi|418325513|ref|ZP_12936719.1| endonuclease III [Staphylococcus epidermidis VCU071]
gi|418411871|ref|ZP_12985137.1| endonuclease III [Staphylococcus epidermidis BVS058A4]
gi|418605708|ref|ZP_13169015.1| endonuclease III [Staphylococcus epidermidis VCU041]
gi|418606697|ref|ZP_13169967.1| endonuclease III [Staphylococcus epidermidis VCU057]
gi|418609641|ref|ZP_13172777.1| endonuclease III [Staphylococcus epidermidis VCU065]
gi|418613314|ref|ZP_13176328.1| endonuclease III [Staphylococcus epidermidis VCU117]
gi|418616304|ref|ZP_13179229.1| endonuclease III [Staphylococcus epidermidis VCU120]
gi|418625074|ref|ZP_13187732.1| endonuclease III [Staphylococcus epidermidis VCU125]
gi|418627778|ref|ZP_13190348.1| endonuclease III [Staphylococcus epidermidis VCU126]
gi|418629175|ref|ZP_13191689.1| endonuclease III [Staphylococcus epidermidis VCU127]
gi|419769540|ref|ZP_14295634.1| endonuclease III [Staphylococcus aureus subsp. aureus IS-250]
gi|419771661|ref|ZP_14297707.1| endonuclease III [Staphylococcus aureus subsp. aureus IS-K]
gi|420163168|ref|ZP_14669915.1| endonuclease III [Staphylococcus epidermidis NIHLM095]
gi|420165458|ref|ZP_14672149.1| endonuclease III [Staphylococcus epidermidis NIHLM088]
gi|420167856|ref|ZP_14674508.1| endonuclease III [Staphylococcus epidermidis NIHLM087]
gi|420170173|ref|ZP_14676734.1| endonuclease III [Staphylococcus epidermidis NIHLM070]
gi|420183123|ref|ZP_14689256.1| endonuclease III [Staphylococcus epidermidis NIHLM049]
gi|420194758|ref|ZP_14700555.1| endonuclease III [Staphylococcus epidermidis NIHLM021]
gi|420201589|ref|ZP_14707199.1| endonuclease III [Staphylococcus epidermidis NIHLM018]
gi|420206222|ref|ZP_14711732.1| endonuclease III [Staphylococcus epidermidis NIHLM008]
gi|420208965|ref|ZP_14714403.1| endonuclease III [Staphylococcus epidermidis NIHLM003]
gi|420211696|ref|ZP_14717054.1| endonuclease III [Staphylococcus epidermidis NIHLM001]
gi|420213920|ref|ZP_14719200.1| endonuclease III [Staphylococcus epidermidis NIH05005]
gi|420217896|ref|ZP_14723026.1| endonuclease III [Staphylococcus epidermidis NIH05001]
gi|420220811|ref|ZP_14725768.1| endonuclease III [Staphylococcus epidermidis NIH04008]
gi|420221756|ref|ZP_14726682.1| endonuclease III [Staphylococcus epidermidis NIH08001]
gi|420225656|ref|ZP_14730483.1| endonuclease III [Staphylococcus epidermidis NIH06004]
gi|420229563|ref|ZP_14734269.1| endonuclease III [Staphylococcus epidermidis NIH04003]
gi|420231978|ref|ZP_14736620.1| endonuclease III [Staphylococcus epidermidis NIH051668]
gi|420234622|ref|ZP_14739182.1| endonuclease III [Staphylococcus epidermidis NIH051475]
gi|27315603|gb|AAO04737.1|AE016747_234 endonuclease-like protein [Staphylococcus epidermidis ATCC 12228]
gi|57637610|gb|AAW54398.1| endonuclease III [Staphylococcus epidermidis RP62A]
gi|291319348|gb|EFE59717.1| endonuclease III [Staphylococcus epidermidis M23864:W2(grey)]
gi|329735386|gb|EGG71678.1| endonuclease III [Staphylococcus epidermidis VCU045]
gi|341655940|gb|EGS79663.1| endonuclease III [Staphylococcus epidermidis VCU037]
gi|365228115|gb|EHM69300.1| endonuclease III [Staphylococcus epidermidis VCU071]
gi|374401411|gb|EHQ72484.1| endonuclease III [Staphylococcus epidermidis VCU041]
gi|374406580|gb|EHQ77472.1| endonuclease III [Staphylococcus epidermidis VCU065]
gi|374407473|gb|EHQ78335.1| endonuclease III [Staphylococcus epidermidis VCU057]
gi|374816249|gb|EHR80456.1| endonuclease III [Staphylococcus epidermidis VCU117]
gi|374821130|gb|EHR85197.1| endonuclease III [Staphylococcus epidermidis VCU120]
gi|374825962|gb|EHR89878.1| endonuclease III [Staphylococcus epidermidis VCU125]
gi|374828925|gb|EHR92748.1| endonuclease III [Staphylococcus epidermidis VCU126]
gi|374834606|gb|EHR98245.1| endonuclease III [Staphylococcus epidermidis VCU127]
gi|383358159|gb|EID35620.1| endonuclease III [Staphylococcus aureus subsp. aureus IS-250]
gi|383360480|gb|EID37875.1| endonuclease III [Staphylococcus aureus subsp. aureus IS-K]
gi|394234857|gb|EJD80431.1| endonuclease III [Staphylococcus epidermidis NIHLM095]
gi|394235259|gb|EJD80831.1| endonuclease III [Staphylococcus epidermidis NIHLM088]
gi|394237884|gb|EJD83370.1| endonuclease III [Staphylococcus epidermidis NIHLM087]
gi|394240511|gb|EJD85934.1| endonuclease III [Staphylococcus epidermidis NIHLM070]
gi|394249586|gb|EJD94799.1| endonuclease III [Staphylococcus epidermidis NIHLM049]
gi|394263818|gb|EJE08539.1| endonuclease III [Staphylococcus epidermidis NIHLM021]
gi|394271857|gb|EJE16336.1| endonuclease III [Staphylococcus epidermidis NIHLM018]
gi|394278061|gb|EJE22378.1| endonuclease III [Staphylococcus epidermidis NIHLM008]
gi|394279193|gb|EJE23501.1| endonuclease III [Staphylococcus epidermidis NIHLM003]
gi|394280650|gb|EJE24925.1| endonuclease III [Staphylococcus epidermidis NIHLM001]
gi|394283842|gb|EJE28003.1| endonuclease III [Staphylococcus epidermidis NIH05005]
gi|394285699|gb|EJE29772.1| endonuclease III [Staphylococcus epidermidis NIH04008]
gi|394286338|gb|EJE30349.1| endonuclease III [Staphylococcus epidermidis NIH05001]
gi|394290167|gb|EJE34034.1| endonuclease III [Staphylococcus epidermidis NIH08001]
gi|394293090|gb|EJE36813.1| endonuclease III [Staphylococcus epidermidis NIH06004]
gi|394299329|gb|EJE42880.1| endonuclease III [Staphylococcus epidermidis NIH04003]
gi|394301700|gb|EJE45154.1| endonuclease III [Staphylococcus epidermidis NIH051668]
gi|394303865|gb|EJE47275.1| endonuclease III [Staphylococcus epidermidis NIH051475]
gi|410891454|gb|EKS39251.1| endonuclease III [Staphylococcus epidermidis BVS058A4]
Length = 219
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 68/161 (42%), Gaps = 28/161 (17%)
Query: 453 IANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSV 512
+ N I+ G+ A IK + L+ E P KE L S G+G K+
Sbjct: 73 LQNDIRSIGLYRNKAKNIKKLCHSLI--------EQFNGQIPQTHKE-LESLAGVGRKTA 123
Query: 513 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRL 572
V + + VDT+V R++ RLG + +S+ + + RL
Sbjct: 124 NVVMSVAFGEPSLAVDTHVERVSKRLG---INRWKDSV---------------RQVEDRL 165
Query: 573 CKLDQRTLY-ELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
C + R + + H+Q+I FG+ C KP C CP+ +CR
Sbjct: 166 CDIIPRDRWNKSHHQLIFFGRYHCLARKPKCEICPLLNDCR 206
>gi|296004674|ref|XP_966134.2| endonuclease III homologue, putative [Plasmodium falciparum 3D7]
gi|225631743|emb|CAG25386.2| endonuclease III homologue, putative [Plasmodium falciparum 3D7]
Length = 437
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 23/126 (18%)
Query: 491 DVPPDKAKEYLLSFRGLGLKSVECVRLLTLH-HLAFPVDTNVGRIAVRLGWVPLQ-PLPE 548
D+P E L G+G K + + L+ H VD +V RIA RL WV + L
Sbjct: 318 DIPH--TYEELKKLPGIGEKIAQLILQTALNKHEGIAVDIHVHRIANRLNWVNSKNELDT 375
Query: 549 SLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMR 608
++L +QK LW E+++ ++ FG+V C KP C C +
Sbjct: 376 QMKLK--------SYVQKELWS-----------EINHVLVGFGQVICKGKKPLCEKCTLT 416
Query: 609 GECRHF 614
+C+++
Sbjct: 417 NKCQYY 422
>gi|406909226|gb|EKD49522.1| hypothetical protein ACD_63C00115G0009 [uncultured bacterium]
Length = 220
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 74/172 (43%), Gaps = 29/172 (16%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDH-GSVDLEWLRDVPPDKAKE 499
D ++ AD+N + +K G + IK L++ + G+V R++P
Sbjct: 62 DVRSLARADLNSLRKILKPAGFFRQKSKHIKSVAETLLKKYNGNVP----RNLPE----- 112
Query: 500 YLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
L+ G+G K+ CV + A PVDT+V RI+ R+G V + PE + L++ P
Sbjct: 113 -LVKLPGVGRKTANCVLVYAYKLPAIPVDTHVHRISNRIGLVRTKA-PEETEFALMKTVP 170
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
K W +D L LH GK C P C++C + C
Sbjct: 171 ------KRYW-----IDMNRLLVLH------GKKTCLPRGPKCDSCVVAEYC 205
>gi|313679175|ref|YP_004056914.1| DNA-(apurinic or apyrimidinic site) lyase [Oceanithermus profundus
DSM 14977]
gi|313151890|gb|ADR35741.1| endonuclease III; DNA-(apurinic or apyrimidinic site) lyase
[Oceanithermus profundus DSM 14977]
Length = 223
Score = 50.1 bits (118), Expect = 0.005, Method: Composition-based stats.
Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 27/169 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
EA+ A ++ I+ G+ A + +LV +HG +VP DK E L+
Sbjct: 76 EALAAATPGEVEPFIRRIGLFRTKARNLVALARKLVEEHGG-------EVPRDK--EALM 126
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
+ G+G K+ V VDT++ R+A RL + PE + L L+P
Sbjct: 127 ALPGVGWKTATVVLGAAFGVPGIAVDTHLARLAHRL-CLSRARTPEKIGAELEALFPR-- 183
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
+K+++ +H+ +I G+ CT KP C+AC + +C
Sbjct: 184 --EKWVF-------------VHHALILHGRYVCTARKPKCDACVLADDC 217
>gi|406025340|ref|YP_006705641.1| Endonuclease III [Cardinium endosymbiont cEper1 of Encarsia
pergandiella]
gi|404432939|emb|CCM10221.1| Endonuclease III [Cardinium endosymbiont cEper1 of Encarsia
pergandiella]
Length = 212
Score = 50.1 bits (118), Expect = 0.005, Method: Composition-based stats.
Identities = 42/175 (24%), Positives = 70/175 (40%), Gaps = 27/175 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
E + C ++ I+ G+ N A I N L+ + S VP + L+
Sbjct: 62 EKIVCLGEERLKQYIRSIGLFNHKAKNIIALSNLLINHYNS-------RVP--NHFDALV 112
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
G+G K+ V + VDT+V R+A R+G + PE ++ LL
Sbjct: 113 QLPGVGRKTANVVLNCLFNQPTIAVDTHVFRVAKRIG-LAKGITPEKVEQELL------- 164
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASA 617
+DQ+ H+ +I G+ C KPNC CP++ C ++ +
Sbjct: 165 ----------AAIDQKWRKHAHHWLILHGRYICKARKPNCTICPIQTYCTYYQKS 209
>gi|319892444|ref|YP_004149319.1| endonuclease III [Staphylococcus pseudintermedius HKU10-03]
gi|317162140|gb|ADV05683.1| Endonuclease III [Staphylococcus pseudintermedius HKU10-03]
Length = 224
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 17/123 (13%)
Query: 499 EYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY 558
E L G+G K+ V + A VDT+V R++ RLG + ++ L +
Sbjct: 110 EQLEGLAGVGRKTANVVMSVAFGEPALAVDTHVERVSKRLGICRWKDSVAEVERRLTSII 169
Query: 559 PVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAF 618
P + W + H+Q+I FG+ C KP C CP+ +CR +
Sbjct: 170 P------RERWTKS-----------HHQLIFFGRYHCLAKKPKCGVCPLFEDCREGQKRY 212
Query: 619 ASS 621
+S
Sbjct: 213 RAS 215
>gi|406907516|gb|EKD48319.1| hypothetical protein ACD_65C00015G0005 [uncultured bacterium]
Length = 210
Score = 50.1 bits (118), Expect = 0.005, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 18/119 (15%)
Query: 496 KAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLL 555
+ + L S G+G K+ + + + AFPVDT++ R+A RLG + PE + L
Sbjct: 106 QTQSELESLAGVGQKTAQVILSQIWNKPAFPVDTHIHRVANRLGLCDAKT-PEQTEKCLK 164
Query: 556 ELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
+ + QKY W ++LH QMI G+ C KP C C ++ C ++
Sbjct: 165 KTFA-----QKY-W-----------HDLHLQMIFHGRGTCKARKPLCEKCALKKLCTYY 206
>gi|301300783|ref|ZP_07206967.1| endonuclease III [Lactobacillus salivarius ACS-116-V-Col5a]
gi|418961299|ref|ZP_13513186.1| endonuclease III [Lactobacillus salivarius SMXD51]
gi|300851633|gb|EFK79333.1| endonuclease III [Lactobacillus salivarius ACS-116-V-Col5a]
gi|380344966|gb|EIA33312.1| endonuclease III [Lactobacillus salivarius SMXD51]
Length = 213
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 68/165 (41%), Gaps = 26/165 (15%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
AD ++A IK G+ A + + LV + SV VP K + L+S G+
Sbjct: 68 ADPKEVAKYIKTIGLYKNKAKYLVECSKMLVENFNSV-------VP--KTHKELMSLSGV 118
Query: 508 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 567
G K+ + V AF VDT+V RI+ RL VP + L+ P + I+
Sbjct: 119 GRKTADVVLAERFGVPAFAVDTHVHRISKRLAIVPEDATVRETERILMSKVPKEDWIKS- 177
Query: 568 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
H++MI +G+ C P C CP+ C+
Sbjct: 178 ----------------HHRMIFWGRYQCMARAPKCETCPLLEICQ 206
>gi|409417881|ref|ZP_11257900.1| endonuclease III [Pseudomonas sp. HYS]
Length = 212
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 73/171 (42%), Gaps = 27/171 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
EA+ V ++ IK G+ N A + + L+ H S VP + +E L
Sbjct: 62 EAIYALGVEGLSEYIKTIGLYNSKAKNVIETCRLLIEQHES-------RVP--ETREALE 112
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
+ G+G K+ V LA VDT++ R++ R G P + + E V +
Sbjct: 113 ALPGVGRKTANVVLNTAFRQLAMAVDTHIFRVSNRTGIAPGKTVLE-----------VEK 161
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
++ K++ P+ LD H+ +I G+ C KP C +C + C +
Sbjct: 162 ALMKFV-PKAYLLDA------HHWLILHGRYVCQARKPRCGSCRIEDLCEY 205
>gi|323456431|gb|EGB12298.1| hypothetical protein AURANDRAFT_5189, partial [Aureococcus
anophagefferens]
Length = 202
Score = 50.1 bits (118), Expect = 0.006, Method: Composition-based stats.
Identities = 39/131 (29%), Positives = 52/131 (39%), Gaps = 23/131 (17%)
Query: 486 LEWLRDVPPDKA-KEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQ 544
L+WL D K L SF+G+G K+V CV + T+ FPVDT+V IA W+P
Sbjct: 86 LQWLHGERDDAVVKRTLSSFKGVGPKTVSCVMMFTMGRAEFPVDTHVLHIAKMCKWLPEA 145
Query: 545 PLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC-- 602
E HL P + LH ++ GK CT+ N
Sbjct: 146 ATREKAYEHLNRRVP-----------------DEVKFALHVLLVEHGKC-CTRCAKNGKL 187
Query: 603 --NACPMRGEC 611
C + G C
Sbjct: 188 QKKECALAGPC 198
>gi|420197340|ref|ZP_14703064.1| endonuclease III [Staphylococcus epidermidis NIHLM020]
gi|420227244|ref|ZP_14732016.1| endonuclease III [Staphylococcus epidermidis NIH05003]
gi|394266147|gb|EJE10793.1| endonuclease III [Staphylococcus epidermidis NIHLM020]
gi|394297334|gb|EJE40935.1| endonuclease III [Staphylococcus epidermidis NIH05003]
Length = 219
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 68/161 (42%), Gaps = 28/161 (17%)
Query: 453 IANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSV 512
+ N I+ G+ A IK + L+ E P KE L S G+G K+
Sbjct: 73 LQNDIRSIGLYRNKAKNIKKLCHSLI--------EQFNGQIPQTHKE-LESLAGVGRKTA 123
Query: 513 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRL 572
V + + VDT+V R++ RLG + +S+ + + RL
Sbjct: 124 NVVMSVAFGEPSLAVDTHVERVSKRLG---INRWKDSV---------------RQVEDRL 165
Query: 573 CKLDQRTLY-ELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
C + R + + H+Q+I FG+ C KP C CP+ +CR
Sbjct: 166 CDIIPRDRWNKSHHQLIFFGRYHCLARKPKCEICPLLNDCR 206
>gi|386319282|ref|YP_006015445.1| endonuclease III [Staphylococcus pseudintermedius ED99]
gi|323464453|gb|ADX76606.1| endonuclease III [Staphylococcus pseudintermedius ED99]
Length = 224
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 17/123 (13%)
Query: 499 EYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY 558
E L G+G K+ V + A VDT+V R++ RLG + ++ L +
Sbjct: 110 EQLEGLAGVGRKTANVVMSVAFGEPALAVDTHVERVSKRLGICRWKDSVTEVERRLTSII 169
Query: 559 PVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAF 618
P + W + H+Q+I FG+ C KP C CP+ +CR +
Sbjct: 170 P------RERWTKS-----------HHQLIFFGRYHCLAKKPKCGVCPLFEDCREGQKRY 212
Query: 619 ASS 621
+S
Sbjct: 213 RAS 215
>gi|322418099|ref|YP_004197322.1| HhH-GPD family protein [Geobacter sp. M18]
gi|320124486|gb|ADW12046.1| HhH-GPD family protein [Geobacter sp. M18]
Length = 221
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 77/171 (45%), Gaps = 18/171 (10%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
EA++ +++A I+ G N+ + R+K F+ L+ HGS+D + D ++ L+
Sbjct: 66 EAIQEIHRDRLAELIRPSGFFNVKSVRLKGFVGWLLERHGSLDAMFRGDW--RALRDELI 123
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
RG+G ++ + + L +F VD R+ RLG V + + V
Sbjct: 124 KVRGVGPETCDSILLYAGEKPSFVVDAYTRRLFSRLGVVKEDD----------DYHRVRS 173
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
++L P D E H ++ K C K KP+C+ CP+R C H
Sbjct: 174 LFMEHLPP-----DVPLFNEYHALIVEQCKRHCRK-KPSCDGCPLRHVCSH 218
>gi|163867394|ref|YP_001608588.1| endonuclease III [Bartonella tribocorum CIP 105476]
gi|161017035|emb|CAK00593.1| endonuclease III [Bartonella tribocorum CIP 105476]
Length = 253
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 72/177 (40%), Gaps = 32/177 (18%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
+IA+ I+ G+ A + N L+ +G PD E L+S G+G K+
Sbjct: 96 EIAHHIRSIGLWRAKARNVYALSNCLIDQYGGQV--------PDTC-EALMSLPGVGRKT 146
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
V + VDT++ R++ RLG P + PE ++ LL++ PV
Sbjct: 147 ANVVLNVAFGQPTLAVDTHIFRLSNRLGLAPGKT-PEIVEKKLLKIIPV----------- 194
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGP 628
L H+ +I G+ C KP C C + C+ AS A+P P
Sbjct: 195 ------HYLRHAHHWLILHGRYICQARKPQCTQCIIADLCKA-----ASKTNAIPAP 240
>gi|323483384|ref|ZP_08088772.1| 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase
[Clostridium symbiosum WAL-14163]
gi|323403238|gb|EGA95548.1| 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase
[Clostridium symbiosum WAL-14163]
Length = 293
Score = 50.1 bits (118), Expect = 0.006, Method: Composition-based stats.
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 480 DHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHL-AFPVDTNVGRI 534
D+G++DL L + A EYLL F G+G K C+ L LHH+ AFPVDT + +I
Sbjct: 184 DNGTLDLNRLSAMGYRDAMEYLLGFYGIGTKVANCICLFGLHHIEAFPVDTWIQQI 239
>gi|87312107|ref|ZP_01094213.1| HhH-GPD protein [Blastopirellula marina DSM 3645]
gi|87285203|gb|EAQ77131.1| HhH-GPD protein [Blastopirellula marina DSM 3645]
Length = 221
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 66/158 (41%), Gaps = 17/158 (10%)
Query: 450 VNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGL 509
V ++A I+ G + A R+++ + R V D S DLE + D +E LL+ G+G
Sbjct: 68 VEELAEIIRPAGYYRLKAKRLQNLM-RYVVDVHSGDLEAMFACSVDSLREDLLALNGIGP 126
Query: 510 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 569
++ + + L + F VDT R+ R GW+ + +Q + P
Sbjct: 127 ETADAILLYAGNLPTFVVDTYTSRVLKRHGWIEQEADYHQIQDQFVSQLPE--------- 177
Query: 570 PRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPM 607
D E H ++ G C K+ P C CP+
Sbjct: 178 ------DVALFNEYHALLVRVGNGHCRKT-PKCETCPL 208
>gi|379021167|ref|YP_005297829.1| Endonuclease III [Staphylococcus aureus subsp. aureus M013]
gi|418949947|ref|ZP_13502164.1| endonuclease III [Staphylococcus aureus subsp. aureus IS-160]
gi|359830476|gb|AEV78454.1| Endonuclease III [Staphylococcus aureus subsp. aureus M013]
gi|375378019|gb|EHS81445.1| endonuclease III [Staphylococcus aureus subsp. aureus IS-160]
Length = 219
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 70/170 (41%), Gaps = 28/170 (16%)
Query: 453 IANTIKERGMNNMLAGRIKDFLNRLV-RDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
+ N I+ G+ A IK L+ + +G + P KE L S G+G K+
Sbjct: 73 LMNDIRSIGLYRNKAKNIKKLCQSLIDQFNGEI---------PQTHKE-LESLAGVGRKT 122
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
V + + VDT+V R++ RLG + ++ L + P + W R
Sbjct: 123 ANVVMSVAFGEPSLAVDTHVERVSKRLGINRWKDNVRQVEDRLCSVIP------RDRWNR 176
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASS 621
H+Q+I FG+ C KP C+ CP+ ECR + +S
Sbjct: 177 -----------SHHQLIFFGRYHCLARKPKCDICPLLEECREGQKRYKAS 215
>gi|438001671|ref|YP_007271414.1| 8-oxoguanine-DNA-glycosylase [Tepidanaerobacter acetatoxydans Re1]
gi|432178465|emb|CCP25438.1| 8-oxoguanine-DNA-glycosylase [Tepidanaerobacter acetatoxydans Re1]
Length = 285
Score = 50.1 bits (118), Expect = 0.006, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 476 RLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHL-AFPVDTNVGRI 534
R++ D G VDL LR++P D+A+E LL+ G+G K +C+ L ++ AFP+D + R+
Sbjct: 179 RMIAD-GKVDLYGLRELPTDEAREVLLTLPGVGRKVADCIMLYSMRKFDAFPIDVWIKRV 237
>gi|332798680|ref|YP_004460179.1| DNA-(apurinic or apyrimidinic site) lyase [Tepidanaerobacter
acetatoxydans Re1]
gi|332696415|gb|AEE90872.1| DNA-(apurinic or apyrimidinic site) lyase [Tepidanaerobacter
acetatoxydans Re1]
Length = 285
Score = 50.1 bits (118), Expect = 0.006, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 476 RLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHL-AFPVDTNVGRI 534
R++ D G VDL LR++P D+A+E LL+ G+G K +C+ L ++ AFP+D + R+
Sbjct: 179 RMIAD-GKVDLYGLRELPTDEAREVLLTLPGVGRKVADCIMLYSMRKFDAFPIDVWIKRV 237
>gi|379713444|ref|YP_005301782.1| endonuclease III [Rickettsia massiliae str. AZT80]
gi|376334090|gb|AFB31322.1| endonuclease III [Rickettsia massiliae str. AZT80]
Length = 210
Score = 50.1 bits (118), Expect = 0.006, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 19/121 (15%)
Query: 494 PDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 553
P+ KE L+ G+G K+ V VDT+V R+A R+G + PE ++
Sbjct: 105 PNDFKE-LIKLPGVGRKTANVVLNCLFGMPTMAVDTHVFRVATRIG-LAKGGTPEIVEKE 162
Query: 554 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
LL++ +D++ L H+ +I G+ C KP+C+ CP++ C +
Sbjct: 163 LLQI-----------------IDKKWLTHAHHWLILHGRYICKARKPDCDICPIKEYCDY 205
Query: 614 F 614
+
Sbjct: 206 Y 206
>gi|378952456|ref|YP_005209944.1| hypothetical protein PSF113_4559 [Pseudomonas fluorescens F113]
gi|359762470|gb|AEV64549.1| Nth [Pseudomonas fluorescens F113]
Length = 212
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 71/171 (41%), Gaps = 27/171 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
E + V ++ IK G+ N A + + L+ HGS +VP + +E L
Sbjct: 62 ETIHALGVEGLSEYIKTIGLFNSKAKNVIETCRLLIERHGS-------EVP--QTREALE 112
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
+ G+G K+ V L VDT++ R++ R G P + + E ++ L++ P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQLTMAVDTHIFRVSNRTGLAPGKNVVE-VEKKLMKFVP--- 168
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
+ L + H+ +I G+ C KP C +C + C +
Sbjct: 169 --------------KEFLLDSHHWLILHGRYVCLARKPRCGSCRIEDLCEY 205
>gi|302384786|ref|YP_003820608.1| endonuclease III [Clostridium saccharolyticum WM1]
gi|302195414|gb|ADL02985.1| endonuclease III [Clostridium saccharolyticum WM1]
Length = 225
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 70/164 (42%), Gaps = 27/164 (16%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
AD+ ++ I G +M A I LV +G +VP + E L S G+
Sbjct: 76 ADLKELEKDIHSLGFYHMKAKNIISCCQDLVEKYGG-------EVP--RTMEELTSLAGV 126
Query: 508 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 567
G K+ +R + + VDT+V RI+ +LG+ + PE ++ L+++ P I
Sbjct: 127 GRKTANVIRGNIYNEPSIVVDTHVKRISRKLGFAREED-PEKIEFELMKVLPKDHWI--- 182
Query: 568 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
LW + Q+IT G+ C P C C ++ C
Sbjct: 183 LW--------------NIQIITLGRSICVARNPKCCQCFLQTLC 212
>gi|323702821|ref|ZP_08114480.1| endonuclease III [Desulfotomaculum nigrificans DSM 574]
gi|333923896|ref|YP_004497476.1| endonuclease III [Desulfotomaculum carboxydivorans CO-1-SRB]
gi|323532209|gb|EGB22089.1| endonuclease III [Desulfotomaculum nigrificans DSM 574]
gi|333749457|gb|AEF94564.1| endonuclease III [Desulfotomaculum carboxydivorans CO-1-SRB]
Length = 223
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 18/114 (15%)
Query: 498 KEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEL 557
+E L G+G K+ + + H FPVDT+V R+A RLG + PE + L L
Sbjct: 117 RETLEKLPGVGRKTANVILGVAFGHHTFPVDTHVHRVARRLG-LSQGKTPEQTEQDLCAL 175
Query: 558 YPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
+P LW R H+Q+I G+ C P C C ++ C
Sbjct: 176 FP------PELWQR-----------AHHQIIYHGRRVCDARNPRCWECCLKELC 212
>gi|239636874|ref|ZP_04677873.1| endonuclease III [Staphylococcus warneri L37603]
gi|239597548|gb|EEQ80046.1| endonuclease III [Staphylococcus warneri L37603]
Length = 219
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 17/121 (14%)
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
L S G+G K+ V + + + VDT+V R++ RLG + ++ L + P
Sbjct: 112 LESLAGVGRKTANVVMSVAFNEPSLAVDTHVERVSKRLGINRWKDNVRQVEDRLCSVIP- 170
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFAS 620
K W + H+Q+I FG+ C KP C+ CP+ +CR + +
Sbjct: 171 -----KERWNKS-----------HHQLIFFGRYHCLARKPKCDICPLFNDCREGQKRYKA 214
Query: 621 S 621
S
Sbjct: 215 S 215
>gi|387814765|ref|YP_005430252.1| DNA glycosylase and apyrimidinic (AP) lyase [Marinobacter
hydrocarbonoclasticus ATCC 49840]
gi|381339782|emb|CCG95829.1| DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)
[Marinobacter hydrocarbonoclasticus ATCC 49840]
Length = 212
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 70/169 (41%), Gaps = 27/169 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
EA+ V+ + IK G+ N A + L+ HGS +VP + E L
Sbjct: 62 EAILALGVDGLKEYIKTIGLFNSKAENVIKTCRILIEKHGS-------EVPARR--EDLE 112
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
+ G+G K+ V A VDT++ R++ R G P + + E ++ L+ L P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQPAMAVDTHIFRVSNRTGIAPGKNVLE-VEKRLVRLVP--- 168
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
+ L + H+ +I G+ CT KP C AC + C
Sbjct: 169 --------------KEFLMDAHHWLILHGRYTCTARKPKCGACIIEDLC 203
>gi|436842028|ref|YP_007326406.1| conserved protein of unknown function [Desulfovibrio hydrothermalis
AM13 = DSM 14728]
gi|432170934|emb|CCO24305.1| conserved protein of unknown function [Desulfovibrio hydrothermalis
AM13 = DSM 14728]
Length = 217
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 71/170 (41%), Gaps = 16/170 (9%)
Query: 438 DSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKA 497
D L + +R K+ I+ G M A R+ +FL+ L R+ + L V +
Sbjct: 58 DGLTMQGLRKFSEEKLQELIRPSGFFRMKAARLNNFLDFLSRNSAECITD-LETVETYEL 116
Query: 498 KEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEL 557
+E LL +G+G ++ + + L L+ F VD RI R V E + H
Sbjct: 117 REKLLEVKGIGPETADSILLYALNKPVFVVDAYTRRIFNRHMLVH-----EEIDYH---- 167
Query: 558 YPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPM 607
+Q++ L D E H ++ K +C K+ P+C CP+
Sbjct: 168 -----ELQEFFMDVLSH-DVNLFNEYHALIVMTAKNWCKKTSPDCEKCPL 211
>gi|331087788|ref|ZP_08336714.1| hypothetical protein HMPREF1025_00297 [Lachnospiraceae bacterium
3_1_46FAA]
gi|330409769|gb|EGG89205.1| hypothetical protein HMPREF1025_00297 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 274
Score = 50.1 bits (118), Expect = 0.006, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 42/66 (63%), Gaps = 3/66 (4%)
Query: 482 GSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHL-AFPVDTNVGRI--AVRL 538
G+V+LE ++++ D+AK+ LL G+G K +C+ L LH L AFPVDT++ ++ V
Sbjct: 186 GTVNLEKIKEMSYDEAKKELLKLSGIGSKVADCICLFALHKLDAFPVDTHIQKVIDTVYA 245
Query: 539 GWVPLQ 544
G P +
Sbjct: 246 GKFPFE 251
>gi|153814191|ref|ZP_01966859.1| hypothetical protein RUMTOR_00400 [Ruminococcus torques ATCC 27756]
gi|317499986|ref|ZP_07958222.1| 8-oxoguanine DNA glycosylase [Lachnospiraceae bacterium 8_1_57FAA]
gi|336438213|ref|ZP_08617853.1| hypothetical protein HMPREF0990_00247 [Lachnospiraceae bacterium
1_1_57FAA]
gi|145848587|gb|EDK25505.1| 8-oxoguanine DNA-glycosylase (ogg) [Ruminococcus torques ATCC
27756]
gi|316898703|gb|EFV20738.1| 8-oxoguanine DNA glycosylase [Lachnospiraceae bacterium 8_1_57FAA]
gi|336014019|gb|EGN43882.1| hypothetical protein HMPREF0990_00247 [Lachnospiraceae bacterium
1_1_57FAA]
Length = 274
Score = 50.1 bits (118), Expect = 0.006, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 42/66 (63%), Gaps = 3/66 (4%)
Query: 482 GSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHL-AFPVDTNVGRI--AVRL 538
G+V+LE ++++ D+AK+ LL G+G K +C+ L LH L AFPVDT++ ++ V
Sbjct: 186 GTVNLEKIKEMSYDEAKKELLKLSGIGSKVADCICLFALHKLDAFPVDTHIQKVIDTVYA 245
Query: 539 GWVPLQ 544
G P +
Sbjct: 246 GKFPFE 251
>gi|355682119|ref|ZP_09062320.1| endonuclease III [Clostridium citroniae WAL-17108]
gi|354811228|gb|EHE95862.1| endonuclease III [Clostridium citroniae WAL-17108]
Length = 223
Score = 50.1 bits (118), Expect = 0.006, Method: Composition-based stats.
Identities = 44/164 (26%), Positives = 68/164 (41%), Gaps = 27/164 (16%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
AD+ ++ I G +M A I LV G VP + E L S G+
Sbjct: 82 ADLKELEQDIHSIGFYHMKAKNIIACCRDLVEKFGG-------KVP--ETIEELTSLAGV 132
Query: 508 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 567
G K+ +R + + VDT+V RI+ +LG + PE ++ L+ + P
Sbjct: 133 GRKTANVIRGNIYNEPSIVVDTHVKRISGKLGLTKEED-PEKIEYDLMRVLPK------- 184
Query: 568 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
D L+ +H +IT G+ C +P C C +R EC
Sbjct: 185 --------DHWILWNIH--IITLGRTICIARRPKCVECFLRDEC 218
>gi|90961668|ref|YP_535584.1| endonuclease III [Lactobacillus salivarius UCC118]
gi|417788262|ref|ZP_12435945.1| endonuclease III [Lactobacillus salivarius NIAS840]
gi|417810344|ref|ZP_12457023.1| endonuclease III [Lactobacillus salivarius GJ-24]
gi|90820862|gb|ABD99501.1| Endonuclease III [Lactobacillus salivarius UCC118]
gi|334308439|gb|EGL99425.1| endonuclease III [Lactobacillus salivarius NIAS840]
gi|335349140|gb|EGM50640.1| endonuclease III [Lactobacillus salivarius GJ-24]
Length = 213
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 68/165 (41%), Gaps = 26/165 (15%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
AD ++A IK G+ A + + LV + SV VP K + L+S G+
Sbjct: 68 ADPKEVAEYIKTIGLYKNKAKYLVECSKMLVENFNSV-------VP--KTHKELMSLSGV 118
Query: 508 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 567
G K+ + V AF VDT+V RI+ RL VP + L+ P + I+
Sbjct: 119 GRKTADVVLAERFGVPAFAVDTHVHRISKRLAIVPEDATVRETEKILMSKVPKEDWIKS- 177
Query: 568 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
H++MI +G+ C P C CP+ C+
Sbjct: 178 ----------------HHRMIFWGRYQCMARAPKCETCPLLEICQ 206
>gi|254492670|ref|ZP_05105841.1| A/G-specific adenine glycosylase [Methylophaga thiooxidans DMS010]
gi|224462191|gb|EEF78469.1| A/G-specific adenine glycosylase [Methylophaga thiooxydans DMS010]
Length = 347
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 27/127 (21%)
Query: 496 KAKEYLLSFRGLGLKSVECVRLLTLHHLAFPV-DTNVGRIAVRL----GWVPLQPLPESL 550
K E L++ G+G +S L +H FP+ D NV R+ R GW
Sbjct: 107 KTLEQLIALPGIG-RSTAGAILTLAYHQPFPILDGNVKRVLTRFDAISGW---------- 155
Query: 551 QLHLLELYPVLESIQKYLWPRLCKL--DQRTLYELHYQMITFGKVFCTKSKPNCNACPMR 608
P + ++ LW R +L ++R + QM G CT+SKP+C CPM+
Sbjct: 156 --------PGNKQVENKLWQRAEQLLPNRRIANYIQAQM-DLGATLCTRSKPDCQNCPMQ 206
Query: 609 GECRHFA 615
C+ FA
Sbjct: 207 HHCQAFA 213
>gi|413916132|gb|AFW56064.1| endonuclease III-like protein 1 [Zea mays]
Length = 287
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 79/194 (40%), Gaps = 36/194 (18%)
Query: 440 LDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKE 499
LD +A+ D +AN IK G A + +++ + LE PD E
Sbjct: 115 LDPDAIVRTDETTLANLIKPVGFYQRKA--------QFIKEASKICLERFGGDIPDSLNE 166
Query: 500 YLLSFRGLGLKSVECVRLLTLHHL-AFPVDTNVGRIAVRLGWVPLQ------PLPESLQL 552
LL+ RG+G K V + + VDT+V RI+ RLGWV + PE ++
Sbjct: 167 -LLALRGVGPKMAHLVMSIAWKNTQGICVDTHVHRISNRLGWVFREGTRQKTTTPEQTRI 225
Query: 553 HLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
L + P K W + L ++ FG+ CT +P C+ C + C
Sbjct: 226 SLEKWLP------KDEWEPINPL-----------LVGFGQTICTPLRPKCDKCGINNIC- 267
Query: 613 HFASAFASSRLALP 626
SAF S +P
Sbjct: 268 --PSAFKESSSPIP 279
>gi|417644265|ref|ZP_12294273.1| endonuclease III [Staphylococcus warneri VCU121]
gi|445059639|ref|YP_007385043.1| endonuclease III [Staphylococcus warneri SG1]
gi|330685004|gb|EGG96679.1| endonuclease III [Staphylococcus epidermidis VCU121]
gi|443425696|gb|AGC90599.1| endonuclease III [Staphylococcus warneri SG1]
Length = 219
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 17/121 (14%)
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
L S G+G K+ V + + + VDT+V R++ RLG + ++ L + P
Sbjct: 112 LESLAGVGRKTANVVMSVAFNEPSLAVDTHVERVSKRLGINRWKDNVRQVEDRLCSVIP- 170
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFAS 620
K W + H+Q+I FG+ C KP C+ CP+ +CR + +
Sbjct: 171 -----KERWNKS-----------HHQLIFFGRYHCLARKPKCDICPLFNDCREGQKRYKA 214
Query: 621 S 621
S
Sbjct: 215 S 215
>gi|418017971|ref|ZP_12657527.1| endonuclease III [Streptococcus salivarius M18]
gi|345526820|gb|EGX30131.1| endonuclease III [Streptococcus salivarius M18]
Length = 214
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 17/119 (14%)
Query: 496 KAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLL 555
K + L S G+G K+ V + VDT+V R++ RL VP E ++ L+
Sbjct: 107 KTHKELESLPGVGRKTANVVLAEVYGIPSIAVDTHVSRVSKRLNIVPEDASVEEIEAELM 166
Query: 556 ELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
+ K+ +R H++MI FG+ C P C CP++ C+++
Sbjct: 167 K-----------------KIPKRDWIISHHRMIFFGRYHCLAKNPKCQTCPLQSYCKYY 208
>gi|340354779|ref|ZP_08677477.1| endonuclease III [Sporosarcina newyorkensis 2681]
gi|339623031|gb|EGQ27540.1| endonuclease III [Sporosarcina newyorkensis 2681]
Length = 215
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 69/163 (42%), Gaps = 26/163 (15%)
Query: 450 VNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGL 509
+ ++ I+ G+ + I+ L+ +HG +VP +++ +++ G+G
Sbjct: 70 IEELQQDIRSIGLYRNKSKNIQALSGILIEEHGG-------EVPA--SRDVMMTLPGVGR 120
Query: 510 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 569
K+ V A VDT+V R+A RLG + P ++ ++ P+ + Q
Sbjct: 121 KTANVVVSNAFGVPALAVDTHVERVAKRLGMNRWKDRPIDVEEKIMRWTPMEKWTQT--- 177
Query: 570 PRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
H+Q+I FG+ C PNC CP+ CR
Sbjct: 178 --------------HHQIIFFGRYHCKAQNPNCPECPLLHLCR 206
>gi|422868162|ref|ZP_16914710.1| endonuclease III [Enterococcus faecalis TX1467]
gi|329576491|gb|EGG58001.1| endonuclease III [Enterococcus faecalis TX1467]
Length = 215
Score = 50.1 bits (118), Expect = 0.007, Method: Composition-based stats.
Identities = 47/170 (27%), Positives = 70/170 (41%), Gaps = 26/170 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
EA+ A V +I IK G+ A IK +L+ +VP + ++ L+
Sbjct: 63 EALAAAPVLEIIAKIKTIGLYRNKAKNIKACAQQLLERFNG-------EVP--QTRDELV 113
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
S G+G K+ V AF VDT+V R++ RL L ++ L+ P
Sbjct: 114 SLPGVGRKTANVVMGDAFGEPAFAVDTHVERVSKRLRICKLNANVTEVEQTLMRKVP--- 170
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
K LW + H+ MI FG+ C P C ACP+ C+
Sbjct: 171 ---KELWVKT-----------HHTMIFFGRYHCLARAPKCEACPLLYMCQ 206
>gi|325107269|ref|YP_004268337.1| DNA-(apurinic or apyrimidinic site) lyase [Planctomyces
brasiliensis DSM 5305]
gi|324967537|gb|ADY58315.1| DNA-(apurinic or apyrimidinic site) lyase [Planctomyces
brasiliensis DSM 5305]
Length = 231
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 68/165 (41%), Gaps = 27/165 (16%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
+IA IK G+ N A I F L+ E+ VP +A+ L+S G+G K
Sbjct: 88 EIAAAIKPCGLYNSKAKNIHRFCEVLLS-------EFDGRVPRTRAE--LMSLPGIGRKC 138
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
+ V+ VDT+V R+ R G L + ++ + L R
Sbjct: 139 ADIVQQFAFDIDVIAVDTHVHRVCNRTG---------------LAVGKTADATARSLEER 183
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFAS 616
+ TL+E H+ +I FGK C P C C + CR++ S
Sbjct: 184 A---PEWTLHEGHFWLIQFGKQICHARTPRCENCSLNHLCRYYRS 225
>gi|159486950|ref|XP_001701499.1| DNA repair glycosylase [Chlamydomonas reinhardtii]
gi|158271560|gb|EDO97376.1| DNA repair glycosylase [Chlamydomonas reinhardtii]
Length = 292
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 75/188 (39%), Gaps = 32/188 (17%)
Query: 433 PEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDH-GSVDLEWLRD 491
PE + D EA+ + ++I I+ G+ A ++ LV + G V W
Sbjct: 126 PELFRRGPDAEAMAKLEASEIEGIIRVLGLAPTKAKNVRAMSQILVEQYDGQVPGSW--- 182
Query: 492 VPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQ 551
E L + G+G K+ V H AFPVDT++ R+A R G
Sbjct: 183 -------EGLEALPGVGHKTASVVMSQAFGHAAFPVDTHIHRLAQRWG------------ 223
Query: 552 LHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
L +E ++ L L + T + H Q+I FG+ C + + ACP+ C
Sbjct: 224 ---LSNGKSVEQTEQDL---KTLLPECTWRDAHLQIIYFGREHCPAQRHDATACPI---C 274
Query: 612 RHFASAFA 619
A A A
Sbjct: 275 SWAAPAAA 282
>gi|156742725|ref|YP_001432854.1| DNA-(apurinic or apyrimidinic site) lyase [Roseiflexus castenholzii
DSM 13941]
gi|156234053|gb|ABU58836.1| DNA-(apurinic or apyrimidinic site) lyase [Roseiflexus castenholzii
DSM 13941]
Length = 219
Score = 50.1 bits (118), Expect = 0.007, Method: Composition-based stats.
Identities = 45/160 (28%), Positives = 68/160 (42%), Gaps = 27/160 (16%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
+IA I G A I+ RL+ +HG VP D + LL+ G+G K+
Sbjct: 78 EIAELIYPVGFYRNKARTIRAICRRLIEEHGG-------KVPADL--DALLALPGVGRKT 128
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
V VDT+V RI R G+V + PE ++ L E+ P +Y W
Sbjct: 129 ANLVLTAGFDLPGICVDTHVHRICNRWGYVQTRT-PEETEMKLREILPF-----EY-WK- 180
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
E++ ++T G+ C + P C+ACP+ C
Sbjct: 181 ----------EINGLLVTLGQNICHPTSPRCSACPLAHLC 210
>gi|357055226|ref|ZP_09116300.1| hypothetical protein HMPREF9467_03272 [Clostridium clostridioforme
2_1_49FAA]
gi|355383182|gb|EHG30268.1| hypothetical protein HMPREF9467_03272 [Clostridium clostridioforme
2_1_49FAA]
Length = 327
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 462 MNNMLAGRIKDFLNRLVRD--HGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLT 519
M L R K +++RL +D G ++L L + + A EYL F G+G K CV L
Sbjct: 199 MGLKLGYRAK-YIHRLCQDAVSGRLELSHLSTLDYEGAMEYLTGFYGIGKKVANCVCLFG 257
Query: 520 LHHL-AFPVDTNVGRIAV 536
LHH+ AFPVDT + +I +
Sbjct: 258 LHHIDAFPVDTWIEKILM 275
>gi|253702180|ref|YP_003023369.1| HhH-GPD family protein [Geobacter sp. M21]
gi|251777030|gb|ACT19611.1| HhH-GPD family protein [Geobacter sp. M21]
Length = 228
Score = 49.7 bits (117), Expect = 0.007, Method: Composition-based stats.
Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 26/176 (14%)
Query: 440 LDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDL----EWLRDVPPD 495
L EA+R D ++A +I+ G N+ + R+K F+ L+ +GS+D +W+R
Sbjct: 67 LSAEALREIDEGRLAESIRPSGFFNVKSARLKGFVEWLLERYGSLDAMFEGDWVR----- 121
Query: 496 KAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLL 555
+E L + RG+G ++ + + L +F VD R+ RLG V + ++ +
Sbjct: 122 -LREELSAVRGIGPETCDSILLYAGGKPSFVVDAYTRRLFSRLGLVREEDDYHQVRALFM 180
Query: 556 ELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
+ P + E H ++ K C K KP C CP+ C
Sbjct: 181 DHLPAKVPL---------------FNEYHALIVEQCKRHCRK-KPLCEGCPLSRFC 220
>gi|242084784|ref|XP_002442817.1| hypothetical protein SORBIDRAFT_08g003320 [Sorghum bicolor]
gi|241943510|gb|EES16655.1| hypothetical protein SORBIDRAFT_08g003320 [Sorghum bicolor]
Length = 367
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 83/199 (41%), Gaps = 38/199 (19%)
Query: 440 LDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKE 499
LD +A+ D +AN IK G A + +++ + LE PD E
Sbjct: 195 LDPDAIVRTDETTLANLIKPVGFYQRKA--------QFIKEASKICLERFGGDIPDSLNE 246
Query: 500 YLLSFRGLGLKSVECVRLLTLHHL-AFPVDTNVGRIAVRLGWVPLQ------PLPESLQL 552
LL+ RG+G K V + + VDT+V RI+ RLGWV + PE ++
Sbjct: 247 -LLALRGVGPKMAHLVMSIAWKNTQGICVDTHVHRISNRLGWVFREGTKQKTTTPEQTRI 305
Query: 553 HLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
L + P K W + L ++ FG+ CT +P C+ C + C
Sbjct: 306 SLEKWLP------KDEWEPINPL-----------LVGFGQTICTPLRPKCDNCGINNLC- 347
Query: 613 HFASAFASSRLALPGPEEK 631
SAF S + P P++K
Sbjct: 348 --PSAFKES--SSPNPKQK 362
>gi|407363495|ref|ZP_11110027.1| endonuclease III [Pseudomonas mandelii JR-1]
Length = 212
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 27/170 (15%)
Query: 444 AVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLS 503
A+ V ++ IK G+ N A + + LV HG +VP +E L +
Sbjct: 63 AIYALGVEGLSEYIKTIGLFNSKAKNVIETCRLLVERHGG-------EVP--HTREELEA 113
Query: 504 FRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLES 563
G+G K+ V L VDT++ R++ R G P + + E +++ L++ P
Sbjct: 114 LPGVGRKTANVVLNTAFRQLTMAVDTHIFRVSNRTGIAPGKNVVE-VEMKLMKFVP---- 168
Query: 564 IQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
++YL LD H+ +I G+ C KP C +C + C +
Sbjct: 169 -KQYL------LDS------HHWLILHGRYVCLARKPRCGSCRIEDLCEY 205
>gi|160880161|ref|YP_001559129.1| 8-oxoguanine DNA glycosylase [Clostridium phytofermentans ISDg]
gi|160428827|gb|ABX42390.1| 8-oxoguanine DNA glycosylase domain protein [Clostridium
phytofermentans ISDg]
Length = 272
Score = 49.7 bits (117), Expect = 0.007, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 482 GSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHL-AFPVDTNVGRI 534
GS DLE L ++ + AK+ L+ G+G+K EC+ L LHH AFP+DT++ ++
Sbjct: 183 GSFDLEGLPNLSYEDAKKELMKLYGVGIKVSECICLYALHHFDAFPIDTHIQKV 236
>gi|442323962|ref|YP_007363983.1| base excision DNA repair protein [Myxococcus stipitatus DSM 14675]
gi|441491604|gb|AGC48299.1| base excision DNA repair protein [Myxococcus stipitatus DSM 14675]
Length = 233
Score = 49.7 bits (117), Expect = 0.007, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 18/115 (15%)
Query: 499 EYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY 558
+ L SF+G+G K + H VD +V R+ R G+V + P++
Sbjct: 130 QVLQSFKGVGPKCAHLALGIACGHDVISVDIHVHRVTNRWGYVKTRT-PQA--------- 179
Query: 559 PVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
LE+++ +L +R E++ ++ FGK CT ++P C+ CP+ +CR
Sbjct: 180 -TLEALE-------ARLPRRYWVEINRLLVPFGKHVCTGARPRCSTCPVLKQCRQ 226
>gi|257795492|ref|ZP_05644471.1| endonuclease III [Staphylococcus aureus A9781]
gi|258420592|ref|ZP_05683534.1| endonuclease III [Staphylococcus aureus A9719]
gi|418433408|ref|ZP_13006170.1| endonuclease III [Staphylococcus aureus subsp. aureus VRS4]
gi|257789464|gb|EEV27804.1| endonuclease III [Staphylococcus aureus A9781]
gi|257843540|gb|EEV67947.1| endonuclease III [Staphylococcus aureus A9719]
gi|387725408|gb|EIK13024.1| endonuclease III [Staphylococcus aureus subsp. aureus VRS4]
Length = 219
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 70/170 (41%), Gaps = 28/170 (16%)
Query: 453 IANTIKERGMNNMLAGRIKDFLNRLV-RDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
+ N I+ G+ A IK L+ + +G + P KE L S G+G K+
Sbjct: 73 LMNDIRSIGLYRNKAKNIKKLCQSLIDQFNGEI---------PQTHKE-LESLAGVGRKT 122
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
V + + VDT+V R++ RLG + ++ L + P + W R
Sbjct: 123 ANVVMSVAFDEPSLAVDTHVERVSKRLGINRWKDNARQVEDRLCSVIP------RDRWNR 176
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASS 621
H+Q+I FG+ C KP C+ CP+ +CR + +S
Sbjct: 177 -----------SHHQLIFFGRYHCLARKPKCDICPLLEDCREGQKRYKAS 215
>gi|242373761|ref|ZP_04819335.1| DNA-(apurinic or apyrimidinic site) lyase [Staphylococcus
epidermidis M23864:W1]
gi|242348498|gb|EES40100.1| DNA-(apurinic or apyrimidinic site) lyase [Staphylococcus
epidermidis M23864:W1]
Length = 219
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 18/128 (14%)
Query: 494 PDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 553
P KE L S G+G K+ V + + VDT+V R++ RLG + ++
Sbjct: 106 PQTHKE-LESLAGVGRKTANVVMSVAFGEPSLAVDTHVERVSKRLGINRWKDNVRQVEDR 164
Query: 554 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
L ++ P + W + H+Q+I FG+ C KP C+ CP+ +CR
Sbjct: 165 LCDIIP------RERWNK-----------SHHQLIFFGRYHCLARKPKCDICPLLDDCRE 207
Query: 614 FASAFASS 621
+ +S
Sbjct: 208 GQKRYKAS 215
>gi|118579102|ref|YP_900352.1| HhH-GPD family protein [Pelobacter propionicus DSM 2379]
gi|118501812|gb|ABK98294.1| HhH-GPD family protein [Pelobacter propionicus DSM 2379]
Length = 218
Score = 49.7 bits (117), Expect = 0.007, Method: Composition-based stats.
Identities = 55/194 (28%), Positives = 80/194 (41%), Gaps = 29/194 (14%)
Query: 418 SLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRL 477
SLR + E R DS + ++ A+ ++IA I G AG+I +RL
Sbjct: 45 SLRTKDEVTAAASARMFARADSAE-RMLKLAE-DEIAALIYPAGFYRTKAGQIHGIAHRL 102
Query: 478 VRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVR 537
V + G +VP + E LL FRG+G K+ V L VDT+V RI R
Sbjct: 103 VTEFGG-------NVPDEM--EDLLRFRGVGRKTANLVLTLGFGKPGICVDTHVHRICNR 153
Query: 538 LGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTK 597
LG+V + PE ++ L P +Y W + L ++ FG+ C
Sbjct: 154 LGYVSTRS-PEQTEMALRAQLP-----GEY-WIAINDL-----------LVAFGQNHCHP 195
Query: 598 SKPNCNACPMRGEC 611
P C C + C
Sbjct: 196 ISPRCTTCRIAEFC 209
>gi|398993563|ref|ZP_10696509.1| endonuclease III [Pseudomonas sp. GM21]
gi|398134559|gb|EJM23709.1| endonuclease III [Pseudomonas sp. GM21]
Length = 212
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 72/170 (42%), Gaps = 27/170 (15%)
Query: 444 AVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLS 503
A+ V ++ IK G+ N A + + LV HG +VP + +E L +
Sbjct: 63 AIHALGVEGLSEYIKTIGLFNSKAKNVIETCRLLVERHGG-------EVP--QTREELEA 113
Query: 504 FRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLES 563
G+G K+ V L VDT++ R++ R G P + + E Q L++ P
Sbjct: 114 LPGVGRKTANVVLNTAFRQLTMAVDTHIFRVSNRTGIAPGKNVVEVEQ-KLMKFVP---- 168
Query: 564 IQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
++YL LD H+ +I G+ C KP C +C + C +
Sbjct: 169 -KQYL------LDS------HHWLILHGRYVCLARKPRCGSCRIEDLCEY 205
>gi|387126931|ref|YP_006295536.1| A/G-specific adenine glycosylase [Methylophaga sp. JAM1]
gi|386273993|gb|AFI83891.1| A/G-specific adenine glycosylase [Methylophaga sp. JAM1]
Length = 296
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 17/138 (12%)
Query: 482 GSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWV 541
+V ++ L D + + LL G+G + + L H +D NV R+ R
Sbjct: 91 AAVQIQQLHDAQVPEDFQSLLDLPGIGRSTAGAIMALAFHQRYPILDGNVKRVLARYD-- 148
Query: 542 PLQPLPESLQLHLLELYPVLESIQKYLWPRLCKL--DQRTLYELHYQMITFGKVFCTKSK 599
+ ++P + + +W R L +QR + QM G CT+S+
Sbjct: 149 ------------AINVWPGEKHAEATMWQRAETLLPEQRIANYIQAQM-DLGATLCTRSR 195
Query: 600 PNCNACPMRGECRHFASA 617
P C CP++ +C+ FAS
Sbjct: 196 PACQKCPLQTDCQAFASG 213
>gi|418284055|ref|ZP_12896787.1| endonuclease III [Staphylococcus aureus subsp. aureus 21202]
gi|418558749|ref|ZP_13123299.1| endonuclease III [Staphylococcus aureus subsp. aureus 21252]
gi|418994123|ref|ZP_13541758.1| endonuclease III [Staphylococcus aureus subsp. aureus CIG290]
gi|365164919|gb|EHM56749.1| endonuclease III [Staphylococcus aureus subsp. aureus 21202]
gi|371977068|gb|EHO94348.1| endonuclease III [Staphylococcus aureus subsp. aureus 21252]
gi|377743920|gb|EHT67898.1| endonuclease III [Staphylococcus aureus subsp. aureus CIG290]
Length = 219
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 70/170 (41%), Gaps = 28/170 (16%)
Query: 453 IANTIKERGMNNMLAGRIKDFLNRLV-RDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
+ N I+ G+ A IK L+ + +G V P KE L S G+G K+
Sbjct: 73 LMNDIRSIGLYRNKAKNIKKLCQSLIDQFNGEV---------PQTHKE-LESLAGVGRKT 122
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
V + + VDT+V R++ RLG + ++ L + P + W R
Sbjct: 123 ANVVMSVAFDEPSLAVDTHVERVSKRLGINRWKDNVRQVEDRLCSVIP------RDRWNR 176
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASS 621
H+Q+I FG+ C KP C+ CP+ +CR + +S
Sbjct: 177 -----------SHHQLIFFGRYHCLARKPKCDICPLLEDCREGQKRYKAS 215
>gi|404317060|ref|ZP_10964993.1| endonuclease III [Ochrobactrum anthropi CTS-325]
Length = 249
Score = 49.7 bits (117), Expect = 0.008, Method: Composition-based stats.
Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 27/164 (16%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
K+ + I+ G+ A + L+RDHG +VP D+ + L+ G+G K+
Sbjct: 97 KVGDHIRTIGLWRNKAKNVILLSEALIRDHGG-------EVPGDR--DELVKLPGVGRKT 147
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
V + VDT++ RI R+G P + PE+++ L+ + P
Sbjct: 148 ANVVLNMAFGQPTMAVDTHILRIGNRIGLAPGKT-PEAVEAILVRVIPA----------- 195
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFA 615
+ H+ +I G+ C KP C C + C++ A
Sbjct: 196 ------EYMLHAHHWLILHGRYVCKARKPECEKCVIADICKYPA 233
>gi|398857977|ref|ZP_10613672.1| endonuclease III [Pseudomonas sp. GM79]
gi|399001819|ref|ZP_10704528.1| endonuclease III [Pseudomonas sp. GM18]
gi|398126760|gb|EJM16186.1| endonuclease III [Pseudomonas sp. GM18]
gi|398239983|gb|EJN25678.1| endonuclease III [Pseudomonas sp. GM79]
Length = 212
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 69/170 (40%), Gaps = 27/170 (15%)
Query: 444 AVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLS 503
A+ V ++ IK G+ N A + + LV HG +VP + +E L +
Sbjct: 63 AIHALGVEGLSEYIKTIGLFNSKAKNVIETCRLLVERHGG-------EVP--QTREALEA 113
Query: 504 FRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLES 563
G+G K+ V L VDT++ R++ R G P + + E Q L++ P
Sbjct: 114 LPGVGRKTANVVLNTAFRQLTMAVDTHIFRVSNRTGIAPGKNVVEVEQ-KLMKFVP---- 168
Query: 564 IQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
+ L + H+ +I G+ C KP C +C + C +
Sbjct: 169 -------------KEYLLDAHHWLILHGRYVCLARKPRCGSCRIEDLCEY 205
>gi|373856599|ref|ZP_09599343.1| endonuclease III [Bacillus sp. 1NLA3E]
gi|372453578|gb|EHP27045.1| endonuclease III [Bacillus sp. 1NLA3E]
Length = 236
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 17/117 (14%)
Query: 496 KAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLL 555
K+++ L+ G+G K+ V + A VDT+V R++ RLG+ +
Sbjct: 125 KSQDELMRLPGVGRKTANVVASVAFGVPAIAVDTHVERVSKRLGYCRWKD---------- 174
Query: 556 ELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
PVLE ++K L ++ K + H+++I FG+ C P C ACP+ CR
Sbjct: 175 ---PVLE-VEKTLMKKIPKEEWSVT---HHRLIFFGRYHCKAQNPQCKACPLLDVCR 224
>gi|95928500|ref|ZP_01311247.1| HhH-GPD [Desulfuromonas acetoxidans DSM 684]
gi|95135290|gb|EAT16942.1| HhH-GPD [Desulfuromonas acetoxidans DSM 684]
Length = 220
Score = 49.7 bits (117), Expect = 0.008, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 51/122 (41%), Gaps = 18/122 (14%)
Query: 498 KEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEL 557
++ LL G+G ++ +C+ L F VD RI RLG LL+
Sbjct: 116 RQRLLDQPGIGPETADCMVLYGAGLPIFVVDAYTRRIFSRLG--------------LLDA 161
Query: 558 YPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASA 617
+ +Q+Y L D E H ++ GKV C P C ACP+ CR SA
Sbjct: 162 KARYDMVQRYAMQHL-PADTSLFNEFHALLVELGKVCCRSRNPRCEACPLNQHCR---SA 217
Query: 618 FA 619
F+
Sbjct: 218 FS 219
>gi|333378080|ref|ZP_08469812.1| endonuclease III [Dysgonomonas mossii DSM 22836]
gi|332883585|gb|EGK03866.1| endonuclease III [Dysgonomonas mossii DSM 22836]
Length = 225
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 18/123 (14%)
Query: 494 PDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 553
PD +E L S G+G K+ + ++ + A PVDT+V R++ R+G P +
Sbjct: 119 PDTLEE-LESIPGVGRKTANVMLIVAFNKPAMPVDTHVFRVSNRIGLTDNSKKPAQTERE 177
Query: 554 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
L++ P R L + H+ +I G+ C KP C C + C++
Sbjct: 178 LIKYIP-----------------SRYLSKAHHWLILHGRYVCLARKPKCEECGLTPFCKY 220
Query: 614 FAS 616
F +
Sbjct: 221 FTN 223
>gi|379795814|ref|YP_005325812.1| putative endonuclease [Staphylococcus aureus subsp. aureus
MSHR1132]
gi|356872804|emb|CCE59143.1| putative endonuclease [Staphylococcus aureus subsp. aureus
MSHR1132]
Length = 219
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 69/170 (40%), Gaps = 28/170 (16%)
Query: 453 IANTIKERGMNNMLAGRIKDFLNRLVRDH-GSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
+ N I+ G+ A IK L+ + G + P KE L S G+G K+
Sbjct: 73 LMNDIRSIGLYRNKAKNIKKLCQSLLDQYNGEI---------PQTHKE-LESLAGVGRKT 122
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
V + + VDT+V R++ RLG + ++ L + P + W R
Sbjct: 123 ANVVMSVAFGEPSLAVDTHVERVSKRLGINRWKDNVRQVEDRLCSIIP------RDRWNR 176
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASS 621
H+Q+I FG+ C KP C+ CP+ +CR + +S
Sbjct: 177 -----------SHHQLIFFGRYHCLARKPKCDICPLLDDCREGQKRYKAS 215
>gi|354807740|ref|ZP_09041198.1| endonuclease III [Lactobacillus curvatus CRL 705]
gi|354513783|gb|EHE85772.1| endonuclease III [Lactobacillus curvatus CRL 705]
Length = 216
Score = 49.7 bits (117), Expect = 0.008, Method: Composition-based stats.
Identities = 44/165 (26%), Positives = 71/165 (43%), Gaps = 26/165 (15%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
A++ I I G+ + A IK +L+ D G +VP A+ L G+
Sbjct: 68 AEIADIEVDIHSIGLYHNKAKHIKTCCQQLMADFGG-------EVPRTHAE--LEQLAGV 118
Query: 508 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 567
G K+ V + +F VDT+V RIA RL + + + + Q
Sbjct: 119 GRKTANVVLGDAFNVPSFAVDTHVTRIAKRL----------KISAQDASVIQIEKDFQ-- 166
Query: 568 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
KL ++T + H+ +I FG+ CT KP+C+ CP+ C+
Sbjct: 167 -----AKLPKKTWVQAHHTLILFGRQVCTARKPHCDECPLLRICQ 206
>gi|339499799|ref|YP_004697834.1| endonuclease III [Spirochaeta caldaria DSM 7334]
gi|338834148|gb|AEJ19326.1| endonuclease III [Spirochaeta caldaria DSM 7334]
Length = 224
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 69/164 (42%), Gaps = 27/164 (16%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
AD ++ + I G + A + D ++RD+G PD +E L RG+
Sbjct: 68 ADKVEVESLIYSTGFYHDKARALLDLSRSILRDYGGH--------VPDTMEE-LTRLRGV 118
Query: 508 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 567
G K+ + + A VDT+V RI +RLG+ + P+ ++ L LY Q+
Sbjct: 119 GRKTASVILSACYNKPALIVDTHVSRICLRLGFTTTRD-PDKVEAALALLY------QEN 171
Query: 568 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
W + + + G+ CT KP C ACP+ C
Sbjct: 172 QW-----------ITIGHCLNQHGRRVCTARKPQCTACPLSSNC 204
>gi|418032607|ref|ZP_12671090.1| endonuclease III [Bacillus subtilis subsp. subtilis str. SC-8]
gi|351471470|gb|EHA31591.1| endonuclease III [Bacillus subtilis subsp. subtilis str. SC-8]
Length = 185
Score = 49.7 bits (117), Expect = 0.008, Method: Composition-based stats.
Identities = 49/184 (26%), Positives = 79/184 (42%), Gaps = 35/184 (19%)
Query: 429 KKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEW 488
K +RPE D+ AV + ++ IK G+ A I+ ++ D+G
Sbjct: 24 KYKRPE------DYLAV---PLEELQQDIKSIGLYRNKAKNIQKLSKMIIEDYGG----- 69
Query: 489 LRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPE 548
+VP D+ + L+ G+G K+ V + A VDT+V R++ RLG +
Sbjct: 70 --EVPRDR--DELVKLPGVGRKTANVVVSVAFGVPAIAVDTHVERVSKRLGICRWKD--- 122
Query: 549 SLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMR 608
VLE ++K L ++ K D H+++I FG+ C P C CP+
Sbjct: 123 ----------SVLE-VEKTLMRKVPKEDWSVT---HHRLIFFGRYHCKAQSPRCAECPLL 168
Query: 609 GECR 612
CR
Sbjct: 169 SLCR 172
>gi|414564257|ref|YP_006043218.1| endonuclease III [Streptococcus equi subsp. zooepidemicus ATCC
35246]
gi|338847322|gb|AEJ25534.1| endonuclease III [Streptococcus equi subsp. zooepidemicus ATCC
35246]
Length = 220
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 73/177 (41%), Gaps = 28/177 (15%)
Query: 448 ADVNKIANTIKERGM-NNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRG 506
A+V+ + N ++ G+ N IK L++ G V P KE L S G
Sbjct: 71 ANVSDVENHLRTIGLYKNKAKNIIKTAQQLLIQFDGQV---------PKTHKE-LESLPG 120
Query: 507 LGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQK 566
+G K+ V A VDT+V RIA RL ++ L
Sbjct: 121 VGRKTANVVLAEIYGVPAIAVDTHVSRIAKRLNISAPDADVTEIEADL------------ 168
Query: 567 YLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRL 623
+ KL ++ H+++I FG+ C P C++CP++G C ++ + + ++
Sbjct: 169 -----MAKLPKKDWIITHHRLIFFGRYHCLAKHPKCDSCPVQGYCSYYKTTYGKKKV 220
>gi|296814514|ref|XP_002847594.1| helix-hairpin-helix domain-containing protein [Arthroderma otae CBS
113480]
gi|238840619|gb|EEQ30281.1| helix-hairpin-helix domain-containing protein [Arthroderma otae CBS
113480]
Length = 481
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 76/222 (34%), Gaps = 73/222 (32%)
Query: 437 KDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFL-----------NRLVRDHGSVD 485
K S+DW VR A V I +K G+ + IK L + LV D
Sbjct: 235 KGSVDWNKVRGAPVEDIYEAMKCGGLGVAKSNYIKQILEMVYTENKARRDALVESRNGKD 294
Query: 486 LEWLRDVP-------------------------------PDKAKEYLLSFRGLGLKSVEC 514
L+ L+ VP D+A + + G+G+K+ C
Sbjct: 295 LD-LKRVPGLINETEKQKENEIALANEHVLSLNHLHSLSKDEAMLEFVKYPGIGVKTAAC 353
Query: 515 VRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCK 574
V L L F VDT+V R++ LGWVP + E LE+ +
Sbjct: 354 VILFCLQRPCFAVDTHVFRLSKWLGWVPPEKANEITAFSHLEV----------------R 397
Query: 575 LDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFAS 616
+ Y LH I GK ACP CR S
Sbjct: 398 VPDNLKYSLHQLFIRHGK-----------ACP---RCRAITS 425
>gi|338972439|ref|ZP_08627812.1| endonuclease III [Bradyrhizobiaceae bacterium SG-6C]
gi|338234224|gb|EGP09341.1| endonuclease III [Bradyrhizobiaceae bacterium SG-6C]
Length = 287
Score = 49.7 bits (117), Expect = 0.008, Method: Composition-based stats.
Identities = 43/161 (26%), Positives = 68/161 (42%), Gaps = 27/161 (16%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
K+ + IK G+ A + +L+ HGS +VP D+A L + G+G K+
Sbjct: 148 KLRDYIKTIGLYRTKAKNVIALSEQLIALHGS-------EVPRDRAA--LEALPGVGRKT 198
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
V + VDT++ R+ R G P + P +++L LLE+ P PR
Sbjct: 199 ANVVLNIAFGEPTIAVDTHLFRVGNRTGLAPGKT-PLAVELGLLEIVP----------PR 247
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
+ H+ +I G+ C KP C C + CR
Sbjct: 248 FAR-------HAHHWLILHGRYTCVARKPRCEVCIINDLCR 281
>gi|260587448|ref|ZP_05853361.1| 8-oxoguanine DNA glycosylase [Blautia hansenii DSM 20583]
gi|331083728|ref|ZP_08332839.1| hypothetical protein HMPREF0992_01763 [Lachnospiraceae bacterium
6_1_63FAA]
gi|260542315|gb|EEX22884.1| 8-oxoguanine DNA glycosylase [Blautia hansenii DSM 20583]
gi|330403939|gb|EGG83491.1| hypothetical protein HMPREF0992_01763 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 272
Score = 49.7 bits (117), Expect = 0.008, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 482 GSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHL-AFPVDTNVGR 533
G +DL+ + + KAKE LL G+G+K +C+ L LHHL AFPVDT++ +
Sbjct: 183 GEIDLQAIEKMKYAKAKEELLKIFGVGVKVADCICLFGLHHLEAFPVDTHINQ 235
>gi|118577076|ref|YP_876819.1| EndoIII-related endonuclease [Cenarchaeum symbiosum A]
gi|118195597|gb|ABK78515.1| EndoIII-related endonuclease [Cenarchaeum symbiosum A]
Length = 277
Score = 49.7 bits (117), Expect = 0.008, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 20/139 (14%)
Query: 484 VDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPL 543
+D ++ VP D E L+ G+G K+ CV + A PVD +V RI+ RLG V
Sbjct: 100 IDTKYGGRVPDDL--ETLVGLPGVGRKTANCVLVYAFEKPAIPVDIHVHRISNRLGLVDT 157
Query: 544 QPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCN 603
+ PE + L + K+ +R ++ + +G+ C P C
Sbjct: 158 RT-PEETEAALTK-----------------KVPKRHWLHVNDIFVMYGQNICKPVSPMCE 199
Query: 604 ACPMRGECRHFASAFASSR 622
C +R C+++A++ + S+
Sbjct: 200 VCGIRSLCKYYANSASLSK 218
>gi|383788949|ref|YP_005473518.1| putative DNA glycosylase/AP lyase [Caldisericum exile AZM16c01]
gi|381364586|dbj|BAL81415.1| putative DNA glycosylase/AP lyase [Caldisericum exile AZM16c01]
Length = 218
Score = 49.7 bits (117), Expect = 0.008, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 20/120 (16%)
Query: 492 VPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQ 551
VP D E LL +G+G K+ V VDT+V RI+ RLGWV + PE +
Sbjct: 110 VPNDL--EELLKLKGVGRKTANLVITEAFDDYGICVDTHVHRISNRLGWVKTKN-PEQTE 166
Query: 552 LHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
+ L ++ P +KY W + + ++TFG+ C P C+ CP+ C
Sbjct: 167 MELRKILP-----KKY-WKTINPI-----------LVTFGQNICKPISPLCSKCPIEPLC 209
>gi|295090684|emb|CBK76791.1| 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase
[Clostridium cf. saccharolyticum K10]
Length = 308
Score = 49.7 bits (117), Expect = 0.008, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 459 ERGMNNMLAGRIKDFLNRLVRD--HGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVR 516
E + + G ++ RL +D G +DLE L+ + +A YL SF G+G K C+
Sbjct: 174 ETELRELKLGYRAKYIFRLCQDAVEGRLDLELLQRLSYGEAMTYLGSFYGIGTKVANCIC 233
Query: 517 LLTLHHL-AFPVDTNVGRI 534
L LHH+ AFPVDT + +I
Sbjct: 234 LFGLHHIEAFPVDTWIEQI 252
>gi|283798664|ref|ZP_06347817.1| putative N-glycosylase/DNA lyase [Clostridium sp. M62/1]
gi|291073649|gb|EFE11013.1| 8-oxoguanine DNA-glycosylase (ogg) [Clostridium sp. M62/1]
Length = 308
Score = 49.7 bits (117), Expect = 0.008, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 459 ERGMNNMLAGRIKDFLNRLVRD--HGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVR 516
E + + G ++ RL +D G +DLE L+ + +A YL SF G+G K C+
Sbjct: 174 ETELRELKLGYRAKYIFRLCQDAVEGRLDLELLQRLSYGEAMTYLGSFYGIGTKVANCIC 233
Query: 517 LLTLHHL-AFPVDTNVGRI 534
L LHH+ AFPVDT + +I
Sbjct: 234 LFGLHHIEAFPVDTWIEQI 252
>gi|217972505|ref|YP_002357256.1| A/G-specific adenine glycosylase [Shewanella baltica OS223]
gi|217497640|gb|ACK45833.1| A/G-specific adenine glycosylase [Shewanella baltica OS223]
Length = 363
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 25/120 (20%)
Query: 499 EYLLSFRGLGLKSVECVRLLTL--HHLAFPV-DTNVGRIAVRLGWVPLQPLPESLQLHLL 555
E +L+ G+G + V L+L HH P+ D NV R+ R G + P ++++ L
Sbjct: 110 EQVLALPGIGRSTAGAVLSLSLGQHH---PILDGNVKRVLARHGAIAGWPGQKTVEAQLW 166
Query: 556 ELYPVL---ESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
+L + + IQKY + M+ G CT+SKPNC ACP+ +C+
Sbjct: 167 QLTDAVTPQQDIQKY----------------NQAMMDIGASICTRSKPNCAACPVAIDCK 210
>gi|347542986|ref|YP_004857623.1| endonuclease III [Candidatus Arthromitus sp. SFB-rat-Yit]
gi|346986022|dbj|BAK81697.1| endonuclease III [Candidatus Arthromitus sp. SFB-rat-Yit]
Length = 209
Score = 49.7 bits (117), Expect = 0.008, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 63/128 (49%), Gaps = 20/128 (15%)
Query: 487 EWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPL 546
E+ +VP K ++ L++ G+G K+ V AF VD +V R++ R+G +
Sbjct: 98 EFNGEVP--KTRDELITLPGVGRKTANVVISNCFGVQAFAVDVHVFRVSNRIG-IANSKT 154
Query: 547 PESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACP 606
PE +L L++ +I + LW +C H+ +I G+ CT KPNC C
Sbjct: 155 PEQTELELMK------NIDESLWT-IC----------HHTIIFHGRRCCTSRKPNCGECK 197
Query: 607 MRGECRHF 614
++ C+++
Sbjct: 198 IKEYCKYY 205
>gi|336114200|ref|YP_004568967.1| endonuclease III [Bacillus coagulans 2-6]
gi|335367630|gb|AEH53581.1| endonuclease III [Bacillus coagulans 2-6]
Length = 219
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 70/163 (42%), Gaps = 26/163 (15%)
Query: 450 VNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGL 509
+ ++ I+ G+ A I+ L+ ++G R+VP + +E L+ G+G
Sbjct: 70 LEELQQDIRSIGLYRNKAKNIQKLCRILIGEYG-------REVP--QTREELMKLPGVGR 120
Query: 510 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 569
K+ V + A VDT+V R++ RLG+ + ++ L++ P E W
Sbjct: 121 KTANVVLSVAFGIPAIAVDTHVERVSKRLGFCRYKDSVLEVEQTLMKKVPKEE------W 174
Query: 570 PRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
H++MI FG+ C +P C CP+ CR
Sbjct: 175 S-----------ITHHRMIFFGRYHCKAQRPQCEICPLLDLCR 206
>gi|413916131|gb|AFW56063.1| hypothetical protein ZEAMMB73_227959 [Zea mays]
Length = 291
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 79/194 (40%), Gaps = 36/194 (18%)
Query: 440 LDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKE 499
LD +A+ D +AN IK G A + +++ + LE PD E
Sbjct: 119 LDPDAIVRTDETTLANLIKPVGFYQRKA--------QFIKEASKICLERFGGDIPDSLNE 170
Query: 500 YLLSFRGLGLKSVECVRLLTLHHL-AFPVDTNVGRIAVRLGWVPLQ------PLPESLQL 552
LL+ RG+G K V + + VDT+V RI+ RLGWV + PE ++
Sbjct: 171 -LLALRGVGPKMAHLVMSIAWKNTQGICVDTHVHRISNRLGWVFREGTRQKTTTPEQTRI 229
Query: 553 HLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
L + P K W + L ++ FG+ CT +P C+ C + C
Sbjct: 230 SLEKWLP------KDEWEPINPL-----------LVGFGQTICTPLRPKCDKCGINNIC- 271
Query: 613 HFASAFASSRLALP 626
SAF S +P
Sbjct: 272 --PSAFKESSSPIP 283
>gi|291280018|ref|YP_003496853.1| endonuclease III [Deferribacter desulfuricans SSM1]
gi|290754720|dbj|BAI81097.1| endonuclease III [Deferribacter desulfuricans SSM1]
Length = 212
Score = 49.7 bits (117), Expect = 0.009, Method: Composition-based stats.
Identities = 50/179 (27%), Positives = 76/179 (42%), Gaps = 28/179 (15%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
++E + AD+ +I I+ G A IK V LE V P E
Sbjct: 62 NFEDFKNADLEEIMEDIRPTGFFRNKAKNIKKL--------SEVILEKYEGVIPVDINE- 112
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
L+ G+G K+ + + VDT+V RI+ RLG P+ ++ L+E+ P
Sbjct: 113 LVKLPGIGRKTANVLLGNCFNIPGIVVDTHVKRISQRLGLTD-NDNPDKIEQDLMEVIP- 170
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFA 619
K W + +Q+I FG+ CT KP C+ C MR C+ FA++ A
Sbjct: 171 -----KEKWTKWS-----------HQVIDFGRKICTAKKPKCDICEMRDVCK-FANSEA 212
>gi|91206121|ref|YP_538476.1| endonuclease III [Rickettsia bellii RML369-C]
gi|91069665|gb|ABE05387.1| Endonuclease III [Rickettsia bellii RML369-C]
Length = 315
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 27/161 (16%)
Query: 457 IKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVR 516
IK G+ N A + L+ ++ S VP + E L+ G+G K+ V
Sbjct: 178 IKSIGLFNSKAKNVIALCQILISNYDS-------KVPNNF--EELVKLPGVGRKTANVVL 228
Query: 517 LLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLD 576
VDT+V R+A R+G PE+++ LL++ +D
Sbjct: 229 NCLFGLPTMAVDTHVFRVAKRIGLAKGNT-PEAVEKELLQI-----------------ID 270
Query: 577 QRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASA 617
+ L H+ +I G+ C KP+C CP++ C ++ SA
Sbjct: 271 GKWLSHAHHWLILHGRYICKARKPDCEICPIKEYCEYYKSA 311
>gi|46580743|ref|YP_011551.1| HhH-GPD family DNA repair protein [Desulfovibrio vulgaris str.
Hildenborough]
gi|120601969|ref|YP_966369.1| HhH-GPD family protein [Desulfovibrio vulgaris DP4]
gi|387154013|ref|YP_005702949.1| HhH-GPD family protein [Desulfovibrio vulgaris RCH1]
gi|46450163|gb|AAS96811.1| DNA repair protein, HhH-GPD family [Desulfovibrio vulgaris str.
Hildenborough]
gi|120562198|gb|ABM27942.1| DNA-3-methyladenine glycosylase III [Desulfovibrio vulgaris DP4]
gi|311234457|gb|ADP87311.1| HhH-GPD family protein [Desulfovibrio vulgaris RCH1]
Length = 226
Score = 49.7 bits (117), Expect = 0.009, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 21/116 (18%)
Query: 495 DKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQ--- 551
D +E LLS +G+G ++ + + L H +F VD RI R G +P + ++
Sbjct: 120 DALRERLLSVKGIGPETADSILLYAFGHPSFVVDAYTRRILSRHGLLPEDVHYDEMRDFF 179
Query: 552 LHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPM 607
+ +L+ PVL + E H ++ K +C KS+P+C ACP+
Sbjct: 180 MDVLDPDPVLYN------------------EFHALIVRVAKGWCHKSRPDCAACPL 217
>gi|398839352|ref|ZP_10596600.1| endonuclease III [Pseudomonas sp. GM102]
gi|398902044|ref|ZP_10650755.1| endonuclease III [Pseudomonas sp. GM50]
gi|398113069|gb|EJM02920.1| endonuclease III [Pseudomonas sp. GM102]
gi|398179053|gb|EJM66678.1| endonuclease III [Pseudomonas sp. GM50]
Length = 212
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 69/170 (40%), Gaps = 27/170 (15%)
Query: 444 AVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLS 503
A+ V ++ IK G+ N A + + LV HG +VP + +E L +
Sbjct: 63 AIHALGVEGLSEYIKTIGLFNSKAKNVIETCRLLVERHGG-------EVP--QTREALEA 113
Query: 504 FRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLES 563
G+G K+ V L VDT++ R++ R G P + + E Q L++ P
Sbjct: 114 LPGVGRKTANVVLNTAFRQLTMAVDTHIFRVSNRTGIAPGKNVVEVEQ-KLMKFVP---- 168
Query: 564 IQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
+ L + H+ +I G+ C KP C +C + C +
Sbjct: 169 -------------KEYLLDAHHWLILHGRYVCLARKPRCGSCRIEDLCEY 205
>gi|408381370|ref|ZP_11178919.1| endonuclease III [Methanobacterium formicicum DSM 3637]
gi|407815837|gb|EKF86400.1| endonuclease III [Methanobacterium formicicum DSM 3637]
Length = 213
Score = 49.7 bits (117), Expect = 0.009, Method: Composition-based stats.
Identities = 45/167 (26%), Positives = 70/167 (41%), Gaps = 27/167 (16%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
AD + I+ G ++ A RI + +L L+ + PD K LL G+
Sbjct: 66 ADPTLLEPLIRPAGFYHVKAQRIVEVSRKL--------LDKFKGQVPDDMKN-LLELPGV 116
Query: 508 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 567
G K+ CV + A PVD +V RI+ RLG V + PE + L ++ P +
Sbjct: 117 GRKTANCVLVYGFQIPAIPVDVHVHRISNRLGLVNTKT-PEETEAELEKIVP------RE 169
Query: 568 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
W EL+ M+ FG+ C P CP++ C ++
Sbjct: 170 YW-----------IELNDLMVQFGQTICRPQSPRHEECPLQELCDYY 205
>gi|402850491|ref|ZP_10898688.1| Endonuclease III [Rhodovulum sp. PH10]
gi|402499258|gb|EJW10973.1| Endonuclease III [Rhodovulum sp. PH10]
Length = 259
Score = 49.7 bits (117), Expect = 0.009, Method: Composition-based stats.
Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 27/162 (16%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
++ + IK G+ N A + RL+ +HG + VP +E L + G+G K+
Sbjct: 113 RLRDYIKTIGLFNTKAKNVIALSERLIAEHGGI-------VP--ATREALETLPGVGRKT 163
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
V + F VDT++ R++ R G P + LE+ LE + P+
Sbjct: 164 ANVVLNIAYGQETFAVDTHIFRVSNRTGLAPGKTP--------LEVEQKLEQVV----PK 211
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
+L H+ +I G+ CT +P C CP+ CR+
Sbjct: 212 DFRL------HAHHWLILHGRYVCTALRPRCPVCPIADLCRY 247
>gi|260583584|ref|ZP_05851332.1| endonuclease III [Granulicatella elegans ATCC 700633]
gi|260158210|gb|EEW93278.1| endonuclease III [Granulicatella elegans ATCC 700633]
Length = 212
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 52/115 (45%), Gaps = 19/115 (16%)
Query: 498 KEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEL 557
+E L+S G+G K+ V + + AF VDT+V RI+ RL + +LE+
Sbjct: 109 REELVSLAGVGRKTANVVMSVAFNIPAFAVDTHVERISKRLQICRQKDT-------VLEV 161
Query: 558 YPVL-ESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
L I K LW R H+ MI FG+ C KP C+ CP+ C
Sbjct: 162 EETLCRKIPKELWSRA-----------HHWMIFFGRYHCIARKPKCHECPLLEMC 205
>gi|154411860|ref|XP_001578964.1| HhH-GPD superfamily base excision DNA repair protein [Trichomonas
vaginalis G3]
gi|121913166|gb|EAY17978.1| HhH-GPD superfamily base excision DNA repair protein [Trichomonas
vaginalis G3]
Length = 239
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 70/169 (41%), Gaps = 30/169 (17%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
AD I + I G N I++ R H D D P KE+ F+G+
Sbjct: 84 ADRETILSCISCVGFANRKTDYIREAAKRC---HEKYD-----DDVPKTLKEFT-EFKGV 134
Query: 508 GLK--SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQ 565
G+K ++ R + VD +V RI+ LGWV P+ + L ++ P
Sbjct: 135 GIKMGTLAMARCWN-EQIGIGVDVHVHRISNLLGWVKTNH-PDETETALQKVLP------ 186
Query: 566 KYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
K +WP E+++ ++ FG+ C K C CP+ CR++
Sbjct: 187 KDIWP-----------EVNHCLVGFGQTVCGSKKRKCEECPISSTCRYY 224
>gi|62734175|gb|AAX96284.1| endonuclease III homologue [Oryza sativa Japonica Group]
gi|62734224|gb|AAX96333.1| endonuclease III homologue [Oryza sativa Japonica Group]
gi|218185559|gb|EEC67986.1| hypothetical protein OsI_35754 [Oryza sativa Indica Group]
gi|222615819|gb|EEE51951.1| hypothetical protein OsJ_33589 [Oryza sativa Japonica Group]
Length = 373
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 85/204 (41%), Gaps = 38/204 (18%)
Query: 437 KDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDK 496
K LD +A+ D +AN IK G A + +++ + LE PD
Sbjct: 187 KGLLDPDAIVRTDEATLANLIKPVGFYQRKA--------KFIKEASKICLERFGGDIPDS 238
Query: 497 AKEYLLSFRGLGLKSVECVRLLTLHHL-AFPVDTNVGRIAVRLGWVPLQ------PLPES 549
E LL+ +G+G K V + + VDT+V RI+ RLGWV + PE
Sbjct: 239 LNE-LLALKGVGPKMAHLVMSIAWKNTQGICVDTHVHRISNRLGWVFREGTKQKTTTPEQ 297
Query: 550 LQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRG 609
++ L + P K W + L ++ FG+ CT +P C+ C +
Sbjct: 298 TRMSLEKWLP------KDEWEPINPL-----------LVGFGQTICTPLRPKCDMCGINN 340
Query: 610 ECRHFASAFASSRLALPGPEEKAI 633
C SAF S + P P++K +
Sbjct: 341 IC---PSAFKES--SSPNPKQKKM 359
>gi|420199396|ref|ZP_14705074.1| endonuclease III [Staphylococcus epidermidis NIHLM031]
gi|394272178|gb|EJE16647.1| endonuclease III [Staphylococcus epidermidis NIHLM031]
Length = 219
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 65/160 (40%), Gaps = 26/160 (16%)
Query: 453 IANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSV 512
+ N I+ G+ A IK + L+ E P KE L S G+G K+
Sbjct: 73 LQNDIRSIGLYRNKAKNIKKLCHSLI--------EQFNGQIPQTHKE-LESLAGVGRKTA 123
Query: 513 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRL 572
V + + VDT+V R++ RLG + ++ L ++ P + W +
Sbjct: 124 NVVMSVAFGEPSLAVDTHVERVSKRLGINRWKDNVRQVEDQLCDIIP------RDRWNKS 177
Query: 573 CKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
H+Q+I FG+ C KP C CP+ +CR
Sbjct: 178 -----------HHQLIFFGRYHCLARKPKCEICPLLNDCR 206
>gi|312959249|ref|ZP_07773767.1| endonuclease III [Pseudomonas fluorescens WH6]
gi|311286509|gb|EFQ65072.1| endonuclease III [Pseudomonas fluorescens WH6]
Length = 212
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 74/171 (43%), Gaps = 27/171 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
EA+ V+ ++ IK G+ N A + + L+ HGS +VP + +E L
Sbjct: 62 EAIYALGVDGLSEYIKTIGLYNSKAKNVIETCRLLIEQHGS-------EVP--QTREALE 112
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
+ G+G K+ V L VDT++ R++ R G + + E ++ L++ P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQLTMAVDTHIFRVSNRTGIARGKNVVE-VEKQLMKFVP--- 168
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
+ YL LD H+ +I G+ C KP C +C + C +
Sbjct: 169 --KPYL------LDS------HHWLILHGRYVCQARKPRCGSCRIEDLCEY 205
>gi|395648781|ref|ZP_10436631.1| endonuclease III [Pseudomonas extremaustralis 14-3 substr. 14-3b]
Length = 212
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 74/171 (43%), Gaps = 27/171 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
EA+ V ++ IK G+ N A + + L+ HGS +VP + +E L
Sbjct: 62 EAIYALGVEGLSEYIKTIGLYNSKAKNVIETCRLLIERHGS-------EVP--QTREALE 112
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
+ G+G K+ V L VDT++ R++ R G + + E ++ L++ P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQLTMAVDTHIFRVSNRTGIARGKNVVE-VEKQLMKFVP--- 168
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
++YL LD H+ +I G+ C KP C +C + C +
Sbjct: 169 --KQYL------LDS------HHWLILHGRYVCQARKPRCGSCRIEDLCEY 205
>gi|24374879|ref|NP_718922.1| adenine glycosylase MutY [Shewanella oneidensis MR-1]
gi|24349580|gb|AAN56366.1| adenine glycosylase MutY [Shewanella oneidensis MR-1]
Length = 365
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 499 EYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY 558
E +L+ G+G + V L+L +D NV R+ R G +E +
Sbjct: 110 EQVLALPGIGRSTAGAVLSLSLGQHHPILDGNVKRVLARHG--------------AIEGW 155
Query: 559 PVLESIQKYLWPRLCKLD-QRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
P + +++ LW +L Q+ + + + M+ G CT+SKPNC ACP+ +C+
Sbjct: 156 PGQKPVEERLWQLTEQLTPQQDIQKYNQAMMDIGASICTRSKPNCAACPVAVDCK 210
>gi|257075651|ref|ZP_05570012.1| endonuclease III [Ferroplasma acidarmanus fer1]
Length = 217
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 73/178 (41%), Gaps = 30/178 (16%)
Query: 438 DSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKA 497
DS+ E ADV I IK G +N+ + RI + + ++G PD
Sbjct: 57 DSVGLENADPADVKAI---IKYVGFSNVKSLRIIEIARIINHEYGGK--------VPDTH 105
Query: 498 KEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEL 557
E L+ G G K+ V + A VDT+V R++ R+G V + P+ + L +
Sbjct: 106 DE-LVKLPGTGSKTANIVLTQGFNIPAIAVDTHVFRVSNRIGLVHTKN-PDETEEALKSI 163
Query: 558 YPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFA 615
P+ + E + M+ FGK C P CN CP+ C +FA
Sbjct: 164 VPLEYQV-----------------EFNPVMVEFGKNICKPVSPRCNICPVSDCCDYFA 204
>gi|345862301|ref|ZP_08814530.1| endonuclease III [Desulfosporosinus sp. OT]
gi|344324588|gb|EGW36137.1| endonuclease III [Desulfosporosinus sp. OT]
Length = 214
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 71/168 (42%), Gaps = 33/168 (19%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSV---DLEWLRDVPPDKAKEYLLSFRGLG 508
++ N I+ G+ + A I +V D + D++ LR +P G+G
Sbjct: 74 ELENRIRSLGLYHNKAKNILAACRVIVEDFAGLVPNDIDSLRKLP------------GVG 121
Query: 509 LKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYL 568
K+ V A VDT+V R+A RLG + PE ++ LL ++P +
Sbjct: 122 RKTANVVASNAFGIPALAVDTHVFRVAHRLG-IANGKTPEKVEEELLRIFP------RER 174
Query: 569 WPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFAS 616
W ++H+ +I G+ C KPNC CP+ C+ + +
Sbjct: 175 WT-----------QVHHLLIFHGRRICVARKPNCEECPLTVVCKMYQA 211
>gi|157960936|ref|YP_001500970.1| A/G-specific adenine glycosylase [Shewanella pealeana ATCC 700345]
gi|157845936|gb|ABV86435.1| A/G-specific adenine glycosylase [Shewanella pealeana ATCC 700345]
Length = 354
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 62/139 (44%), Gaps = 26/139 (18%)
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPV-DTNVGRIAVRLG----WVPLQPLPESLQLHLL 555
+L+ G+G + V L+L L FP+ D NV R+ R G W +P+ + L L
Sbjct: 112 VLALPGIGRSTAGAVLSLSLG-LNFPILDGNVKRVLARHGAIEGWPGKKPVEQQLWLLTE 170
Query: 556 ELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFA 615
L P + IQKY + M+ G CT+SKPNC CP+ +C+
Sbjct: 171 NLTPA-KDIQKY----------------NQAMMDIGATVCTRSKPNCAQCPVAIDCK--- 210
Query: 616 SAFASSRLALPGPEEKAIV 634
+ + + PG + K +
Sbjct: 211 AQLSGRQSEFPGKKPKKTI 229
>gi|67459583|ref|YP_247207.1| endonuclease III [Rickettsia felis URRWXCal2]
gi|75536019|sp|Q4UK93.1|END3_RICFE RecName: Full=Endonuclease III; AltName: Full=DNA-(apurinic or
apyrimidinic site) lyase
gi|67005116|gb|AAY62042.1| Endonuclease III [Rickettsia felis URRWXCal2]
Length = 213
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 70/164 (42%), Gaps = 27/164 (16%)
Query: 457 IKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVR 516
IK G+ N A I L+ ++ S VP D KE L+ G+G K+ V
Sbjct: 76 IKSIGLFNSKAKNIIALCKILISNYQS-------SVPND-FKE-LIKLPGVGRKTANVVL 126
Query: 517 LLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLD 576
VDT+V R+A R+G PE ++ LL++ ++
Sbjct: 127 NCLFGMPTMAVDTHVFRVAKRIGLARGNS-PEIVEKELLQI-----------------IN 168
Query: 577 QRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFAS 620
++ L H+ +I G+ C KP+C+ CP++ C ++ S S
Sbjct: 169 EKWLTHAHHWLILHGRYICKARKPDCDICPIKEYCEYYNSPIIS 212
>gi|359689881|ref|ZP_09259882.1| endonuclease III [Leptospira licerasiae serovar Varillal str.
MMD0835]
gi|418749244|ref|ZP_13305536.1| putative endonuclease III [Leptospira licerasiae str. MMD4847]
gi|418757752|ref|ZP_13313939.1| putative endonuclease III [Leptospira licerasiae serovar Varillal
str. VAR 010]
gi|384115529|gb|EIE01787.1| putative endonuclease III [Leptospira licerasiae serovar Varillal
str. VAR 010]
gi|404276313|gb|EJZ43627.1| putative endonuclease III [Leptospira licerasiae str. MMD4847]
Length = 231
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 74/171 (43%), Gaps = 30/171 (17%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
E++ A + KI I G A + F N L+ ++G P KE L+
Sbjct: 81 ESLASAPLKKIEKIIYPTGFYRNKAKSVSGFANLLLHEYGGKL--------PKSIKE-LI 131
Query: 503 SFRGLGLKSVECVRLLTLHHLA--FPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
G+G K+ V L +HH++ F VDT+V R++ +LG Q P ++ L++
Sbjct: 132 KLPGIGRKTANVV-LNEIHHISEGFVVDTHVKRVSKKLGLTK-QTDPVKVEKDLMQ---- 185
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
++Q W L +LY I G+ +C K C C +R EC
Sbjct: 186 --NVQPEYWMDL------SLY-----FIFLGRKYCKAHKTFCETCILRKEC 223
>gi|327309186|ref|XP_003239284.1| HhH-GPD family base excision DNA repair protein [Trichophyton
rubrum CBS 118892]
gi|326459540|gb|EGD84993.1| HhH-GPD family base excision DNA repair protein [Trichophyton
rubrum CBS 118892]
Length = 467
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 75/221 (33%), Gaps = 71/221 (32%)
Query: 437 KDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFL------NRLVRD---------- 480
K S+DW VR A V I ++K G+ + IK L N+ RD
Sbjct: 237 KGSVDWNKVREAPVEDIYESMKCGGLGVAKSKYIKQILEMVYEENKARRDALVESKTGKE 296
Query: 481 -------------------------HGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECV 515
+ L L + D+A + + G+G+K+ CV
Sbjct: 297 LDLTRAPGFRNETEEQKDNEIAMTNENVLSLNHLHSLSKDEAMLEFVKYPGIGVKTAACV 356
Query: 516 RLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKL 575
L L F VDT+V R++ LGW+P + E LE+ K+
Sbjct: 357 VLFCLQRPCFAVDTHVFRLSKWLGWIPTDKVNEITAFSHLEV----------------KI 400
Query: 576 DQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFAS 616
Y LH I GK ACP CR +
Sbjct: 401 PDHLKYSLHQLFILHGK-----------ACP---RCRGITT 427
>gi|298675584|ref|YP_003727334.1| DNA-(apurinic or apyrimidinic site) lyase [Methanohalobium
evestigatum Z-7303]
gi|298288572|gb|ADI74538.1| DNA-(apurinic or apyrimidinic site) lyase [Methanohalobium
evestigatum Z-7303]
Length = 203
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 69/165 (41%), Gaps = 29/165 (17%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDH-GSVDLEWLRDVPPDKAKEYLLSFRG 506
D ++I + IK G + RIK ++ ++ G V PD + LL G
Sbjct: 63 TDEDEIESLIKNVGFYRVKTQRIKQISEMILDEYDGQV---------PDNLND-LLKLPG 112
Query: 507 LGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQK 566
+G K+ CV A VDT+V RI+ RLG V + PE + L ++ P +
Sbjct: 113 VGRKTANCVLTYAFSKKAIAVDTHVHRISNRLGLVETKT-PEKTEKDLKKIVP------E 165
Query: 567 YLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
LW ++ +L + FG+ C P C+ C + C
Sbjct: 166 NLWNKINEL-----------FVRFGQNTCRPVSPRCDVCVLNDTC 199
>gi|387770312|ref|ZP_10126495.1| endonuclease III [Pasteurella bettyae CCUG 2042]
gi|386904674|gb|EIJ69463.1| endonuclease III [Pasteurella bettyae CCUG 2042]
Length = 211
Score = 49.3 bits (116), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 71/171 (41%), Gaps = 27/171 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
E + V+ + IK G+ N A I L+ H S VP ++ E L
Sbjct: 62 EDILALGVDGLKEYIKTIGLYNAKAENIIKTCRTLIEKHHS-------QVPENR--EALE 112
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
+ G+G K+ V H VDT++ R++ R G+ P + + E V E
Sbjct: 113 ALAGVGRKTANVVLNTAFGHPTIAVDTHIFRVSNRTGFAPGKDVLE-----------VEE 161
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
+ K + P K+D +H+ +I FG+ C KP C +C + C +
Sbjct: 162 KLNKVV-PDEFKMD------VHHWLILFGRYTCIARKPRCGSCLIEDLCEY 205
>gi|320451065|ref|YP_004203161.1| endonuclease III [Thermus scotoductus SA-01]
gi|320151234|gb|ADW22612.1| endonuclease III [Thermus scotoductus SA-01]
Length = 217
Score = 49.3 bits (116), Expect = 0.010, Method: Composition-based stats.
Identities = 44/171 (25%), Positives = 69/171 (40%), Gaps = 27/171 (15%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
D +A+ A ++ I+ G+ A + RLV +HG +VP DK +
Sbjct: 69 DPQALAKATPEEVEPYIRRIGLYRTKAKNLVALARRLVEEHGG-------EVPRDK--KA 119
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
L+ G+G K+ V VDT+V R+A RL + L PE + L L+P
Sbjct: 120 LMKLPGVGWKTATVVLGAAFGVPGIAVDTHVARLARRL-CLSLAKAPERIGAELEALFPK 178
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
E + +H+ ++ G+ C KP C AC + C
Sbjct: 179 EEWVF-----------------VHHALVLHGRYVCLARKPRCGACSLAPHC 212
>gi|121997381|ref|YP_001002168.1| HhH-GPD family protein [Halorhodospira halophila SL1]
gi|121588786|gb|ABM61366.1| HhH-GPD family protein [Halorhodospira halophila SL1]
Length = 234
Score = 49.3 bits (116), Expect = 0.010, Method: Composition-based stats.
Identities = 42/168 (25%), Positives = 72/168 (42%), Gaps = 19/168 (11%)
Query: 440 LDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKE 499
LD A+ AD ++A I+ G N+ R+++ +++ ++ R + +E
Sbjct: 70 LDPVALIEADPEEVATAIRPAGYFNVKTRRLRNLCITYLQEGCMEGMQLQRT---EALRE 126
Query: 500 YLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
LL+ G+G ++ + + L H F VD RI RLGW+ E L+
Sbjct: 127 KLLAVNGVGRETADDILLYAFHRPVFVVDAYTRRILQRLGWIQGDEGYERLR-------- 178
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPM 607
++ L P + ELH Q++ GK C + P C CP+
Sbjct: 179 --GGVEAALGPNTAAFN-----ELHAQIVALGKDTC-RPTPRCPDCPL 218
>gi|256811111|ref|YP_003128480.1| HhH-GPD family protein [Methanocaldococcus fervens AG86]
gi|256794311|gb|ACV24980.1| HhH-GPD family protein [Methanocaldococcus fervens AG86]
Length = 211
Score = 49.3 bits (116), Expect = 0.010, Method: Composition-based stats.
Identities = 45/168 (26%), Positives = 75/168 (44%), Gaps = 16/168 (9%)
Query: 440 LDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKE 499
L+ E + D +K+ IK G N+ A R+K+ +V ++GS + D ++
Sbjct: 58 LEEEKILNIDEDKLKELIKPAGFYNLKAKRLKNTTKFIVDNYGSTEGMAKTDKDTLTLRK 117
Query: 500 YLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
LLS G+G ++ + + L L +F VD R+ RLG + + + ++
Sbjct: 118 ELLSINGVGKETADSILLYALDRESFVVDAYTKRMFSRLGIINEKAKYDEIK-------- 169
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPM 607
E +K L P+ D E H ++ K FC K KP C CP+
Sbjct: 170 --EIFEKSL-PK----DLEIYKEYHALIVEHCKKFCRK-KPLCEKCPI 209
>gi|452963265|gb|EME68342.1| EndoIII-related endonuclease [Magnetospirillum sp. SO-1]
Length = 211
Score = 49.3 bits (116), Expect = 0.010, Method: Composition-based stats.
Identities = 47/183 (25%), Positives = 74/183 (40%), Gaps = 28/183 (15%)
Query: 429 KKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEW 488
K RP T+ + EA+ +A I+ G+ A + + RL+ HG
Sbjct: 49 KATRPLFTRVNTP-EAMVALGEEGLAECIRTIGLYKTKARNVVELSRRLLARHGG----- 102
Query: 489 LRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPE 548
VP D+A L + G+G K+ V + VDT+ R+A R G P + + E
Sbjct: 103 --KVPHDRAA--LEALPGVGRKTANVVLNIAFGEPTIAVDTHCFRVANRTGLAPGRTV-E 157
Query: 549 SLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMR 608
+++ L+ P R L H+ +I G+ C KP+C AC +R
Sbjct: 158 AVEEGLMRATPA-----------------RWLQHAHHWLILHGRYVCKARKPDCGACVVR 200
Query: 609 GEC 611
C
Sbjct: 201 DLC 203
>gi|336310578|ref|ZP_08565550.1| A/G-specific adenine glycosylase [Shewanella sp. HN-41]
gi|335866308|gb|EGM71299.1| A/G-specific adenine glycosylase [Shewanella sp. HN-41]
Length = 363
Score = 49.3 bits (116), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 25/120 (20%)
Query: 499 EYLLSFRGLGLKSVECVRLLTL--HHLAFPV-DTNVGRIAVRLGWVPLQPLPESLQLHLL 555
E +L+ G+G + V L+L HH P+ D NV R+ R G + P ++++ L
Sbjct: 110 EQVLALPGIGRSTAGAVLSLSLGQHH---PILDGNVKRVLARHGAIAGWPGQKNVEEQLW 166
Query: 556 EL---YPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
+L Y ++IQKY + M+ G CT+SKPNC ACP+ +C+
Sbjct: 167 QLTDTYTPQQNIQKY----------------NQAMMDIGASICTRSKPNCAACPVAIDCK 210
>gi|340398994|ref|YP_004728019.1| putative endonuclease III [Streptococcus salivarius CCHSS3]
gi|338742987|emb|CCB93495.1| putative endonuclease III (DNA-(apurinic or apyrimidinic site)
lyase) [Streptococcus salivarius CCHSS3]
Length = 214
Score = 49.3 bits (116), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 64/147 (43%), Gaps = 19/147 (12%)
Query: 468 GRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPV 527
G K+ +++ +V + + VP K ++ L S G+G K+ V + V
Sbjct: 81 GLYKNKAKNIIKTARAVLMNFDGQVP--KTRKELESLPGVGRKTANVVLAEVYGIPSIAV 138
Query: 528 DTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQM 587
DT+V R++ RL P E ++ L++ K+ ++ H++M
Sbjct: 139 DTHVSRVSKRLNIAPEDASVEEIEAELMK-----------------KIPKKDWIISHHRM 181
Query: 588 ITFGKVFCTKSKPNCNACPMRGECRHF 614
I FG+ C P C CP++ C+++
Sbjct: 182 IFFGRYHCLAKNPKCQTCPLQSYCKYY 208
>gi|251810880|ref|ZP_04825353.1| DNA-(apurinic or apyrimidinic site) lyase [Staphylococcus
epidermidis BCM-HMP0060]
gi|282876114|ref|ZP_06284981.1| endonuclease III [Staphylococcus epidermidis SK135]
gi|417656037|ref|ZP_12305728.1| endonuclease III [Staphylococcus epidermidis VCU028]
gi|417912237|ref|ZP_12555932.1| endonuclease III [Staphylococcus epidermidis VCU105]
gi|417913746|ref|ZP_12557409.1| endonuclease III [Staphylococcus epidermidis VCU109]
gi|418621823|ref|ZP_13184588.1| endonuclease III [Staphylococcus epidermidis VCU123]
gi|418664624|ref|ZP_13226092.1| endonuclease III [Staphylococcus epidermidis VCU081]
gi|420172512|ref|ZP_14679011.1| endonuclease III [Staphylococcus epidermidis NIHLM067]
gi|420187337|ref|ZP_14693358.1| endonuclease III [Staphylococcus epidermidis NIHLM039]
gi|421607047|ref|ZP_16048297.1| endonuclease III [Staphylococcus epidermidis AU12-03]
gi|251805560|gb|EES58217.1| DNA-(apurinic or apyrimidinic site) lyase [Staphylococcus
epidermidis BCM-HMP0060]
gi|281295139|gb|EFA87666.1| endonuclease III [Staphylococcus epidermidis SK135]
gi|329737287|gb|EGG73541.1| endonuclease III [Staphylococcus epidermidis VCU028]
gi|341651248|gb|EGS75053.1| endonuclease III [Staphylococcus epidermidis VCU105]
gi|341654768|gb|EGS78506.1| endonuclease III [Staphylococcus epidermidis VCU109]
gi|374410434|gb|EHQ81192.1| endonuclease III [Staphylococcus epidermidis VCU081]
gi|374828251|gb|EHR92090.1| endonuclease III [Staphylococcus epidermidis VCU123]
gi|394241673|gb|EJD87082.1| endonuclease III [Staphylococcus epidermidis NIHLM067]
gi|394256316|gb|EJE01249.1| endonuclease III [Staphylococcus epidermidis NIHLM039]
gi|406657340|gb|EKC83729.1| endonuclease III [Staphylococcus epidermidis AU12-03]
Length = 219
Score = 49.3 bits (116), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 68/161 (42%), Gaps = 28/161 (17%)
Query: 453 IANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSV 512
+ N I+ G+ A IK + L+ E P KE L S G+G K+
Sbjct: 73 LQNDIRSIGLYRNKAKNIKKLCHSLI--------EQFNGQIPQTHKE-LESLAGVGRKTA 123
Query: 513 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRL 572
V + + VDT+V R++ RLG + +S+ + + RL
Sbjct: 124 NVVMSVAFGEPSLAVDTHVERVSKRLG---INRWKDSV---------------RQVEDRL 165
Query: 573 CKLDQRTLY-ELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
C + R + + H+Q+I FG+ C KP C CP+ +CR
Sbjct: 166 CDIIPRDRWNKSHHQLIFFGRYHCLARKPKCEICPLLYDCR 206
>gi|115374385|ref|ZP_01461668.1| endonuclease III (DNA-(apurinic or apyrimidinic site)lyase)
[Stigmatella aurantiaca DW4/3-1]
gi|115368587|gb|EAU67539.1| endonuclease III (DNA-(apurinic or apyrimidinic site)lyase)
[Stigmatella aurantiaca DW4/3-1]
Length = 195
Score = 49.3 bits (116), Expect = 0.010, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 20/122 (16%)
Query: 492 VPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQ 551
+P D E L SFRG+G K + H A VD +V R+ R G+V + ++L+
Sbjct: 87 LPADA--EVLQSFRGVGPKCAHLALGVACGHEAISVDIHVHRVTNRWGYVRTRSPEQTLK 144
Query: 552 LHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
LE+ +L + E++ ++ FGK CT S+P C+ CP+ C
Sbjct: 145 --------ALEA----------RLPRAYWIEINRLLVPFGKHVCTGSRPQCSRCPVLAMC 186
Query: 612 RH 613
+
Sbjct: 187 QQ 188
>gi|408423596|emb|CCJ11007.1| DNA-(Apurinic or apyrimidinic site) lyase [Staphylococcus aureus
subsp. aureus ST228]
gi|408425586|emb|CCJ12973.1| DNA-(Apurinic or apyrimidinic site) lyase [Staphylococcus aureus
subsp. aureus ST228]
gi|408427574|emb|CCJ14937.1| DNA-(Apurinic or apyrimidinic site) lyase [Staphylococcus aureus
subsp. aureus ST228]
gi|408429562|emb|CCJ26727.1| DNA-(Apurinic or apyrimidinic site) lyase [Staphylococcus aureus
subsp. aureus ST228]
gi|408431549|emb|CCJ18864.1| Endonuclease-like protein [Staphylococcus aureus subsp. aureus
ST228]
gi|408433543|emb|CCJ20828.1| Endonuclease-like protein [Staphylococcus aureus subsp. aureus
ST228]
gi|408435535|emb|CCJ22795.1| Endonuclease-like protein [Staphylococcus aureus subsp. aureus
ST228]
gi|408437519|emb|CCJ24762.1| Endonuclease-like protein [Staphylococcus aureus subsp. aureus
ST228]
Length = 210
Score = 49.3 bits (116), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 71/171 (41%), Gaps = 28/171 (16%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLV-RDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLK 510
++ N I+ G+ A IK L+ + +G + P KE L S G+G K
Sbjct: 63 ELMNDIRSIGLYRNKAKNIKKLCQSLIDQFNGEI---------PQTHKE-LESLAGVGRK 112
Query: 511 SVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP 570
+ V + + VDT+V R++ RLG + ++ L + P + W
Sbjct: 113 TANVVMSVAFDEPSLAVDTHVERVSKRLGINRWKDNVRQVEDRLCSVIP------RDRWN 166
Query: 571 RLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASS 621
R H+Q+I FG+ C KP C+ CP+ +CR + +S
Sbjct: 167 R-----------SHHQLIFFGRYHCLARKPKCDICPLLEDCREGQKRYKAS 206
>gi|94543806|gb|ABF33854.1| Endonuclease III [Streptococcus pyogenes MGAS10270]
Length = 218
Score = 49.3 bits (116), Expect = 0.010, Method: Composition-based stats.
Identities = 44/223 (19%), Positives = 90/223 (40%), Gaps = 35/223 (15%)
Query: 409 EKQNDFDWDS---------LRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKE 459
E + + DW++ L Q K P + + E + A+V+ + N ++
Sbjct: 21 EAKGELDWETPFQLLIAVILSAQTTDKAVNKVTPGLWQSYPEIEDLAFAEVSDVENALRT 80
Query: 460 RGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLT 519
G+ K+ +++ ++ ++ VP K + L S G+G K+ V
Sbjct: 81 IGL-------YKNKAKNIIKTAQAIRDDFKGQVP--KTHKELESLPGVGRKTANVVLAEV 131
Query: 520 LHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRT 579
A VDT+V R++ RL + ++ L+ K+ ++
Sbjct: 132 YGVPAIAVDTHVARVSKRLNISSPDADVKQIEADLM-----------------AKIPKKD 174
Query: 580 LYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSR 622
H+++I FG+ C KP C CP++ C+++ + + S+
Sbjct: 175 WIITHHRLIFFGRYHCLAKKPKCEICPVQSYCKYYQNTYGKSK 217
>gi|6850320|gb|AAF29397.1|AC009999_17 Contains similarity to an endonuclease III homolog from Homo
sapiens gb|U81285, and contains an Endonuclease III
PF|00730 domain [Arabidopsis thaliana]
Length = 402
Score = 49.3 bits (116), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 78/193 (40%), Gaps = 18/193 (9%)
Query: 426 NGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVD 485
G ER H L EA+ AD + I I G A +K +
Sbjct: 198 TGAAVER-LHQNGLLTPEAIDKADESTIKELIYPVGFYTRKATNVKKVAKICL------- 249
Query: 486 LEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHL-AFPVDTNVGRIAVRLGWVPLQ 544
+E+ D+P + E LLS G+G K V + + + VDT+V RI RLGWV +
Sbjct: 250 MEYDGDIP--RTLEELLSLPGVGPKIAHLVLHVAWNDVQGICVDTHVHRICNRLGWVS-K 306
Query: 545 PLPESLQLHLLELYPVLESIQKYLWPRLCK------LDQRTLYELHYQMITFGKVFCTKS 598
P + LL Y QK P + L + +++ ++ FG+ CT
Sbjct: 307 PGTKQFAYLLLVTYLYFVLDQKTSSPEETRVALQQWLPKGEWVAINFLLVGFGQTICTPL 366
Query: 599 KPNCNACPMRGEC 611
+P+C C + C
Sbjct: 367 RPHCGTCSITEIC 379
>gi|398875557|ref|ZP_10630728.1| endonuclease III [Pseudomonas sp. GM67]
gi|398885581|ref|ZP_10640490.1| endonuclease III [Pseudomonas sp. GM60]
gi|398192306|gb|EJM79464.1| endonuclease III [Pseudomonas sp. GM60]
gi|398206914|gb|EJM93671.1| endonuclease III [Pseudomonas sp. GM67]
Length = 212
Score = 49.3 bits (116), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 74/171 (43%), Gaps = 27/171 (15%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
+A+ V ++ IK G+ N A + + LV HG +VP + +E L
Sbjct: 62 QAIYALGVEGLSEYIKTIGLFNSKAKNVIETCRLLVERHGG-------EVP--QTREELE 112
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
+ G+G K+ V L VDT++ R++ R G P + + E ++ L++ P
Sbjct: 113 ALPGVGRKTANVVLNTAFRQLTMAVDTHIFRVSNRTGIAPGKNVVE-VEKKLMKFVP--- 168
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
++YL LD H+ +I G+ C KP C +C + C +
Sbjct: 169 --KEYL------LDS------HHWLILHGRYVCLARKPRCGSCRIEDLCEY 205
>gi|425738168|ref|ZP_18856435.1| endonuclease III [Staphylococcus massiliensis S46]
gi|425480304|gb|EKU47471.1| endonuclease III [Staphylococcus massiliensis S46]
Length = 220
Score = 49.3 bits (116), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 17/121 (14%)
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
L S G+G K+ V + + VDT+V R++ RLG + ++ L + P
Sbjct: 112 LESLAGVGRKTANVVMSVAFGEPSLAVDTHVERVSKRLGICRYKDNVREVERKLTSIIP- 170
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFAS 620
+ W + H+Q+I FG+ C KP C+ CP+ +CR + +
Sbjct: 171 -----REQWTKS-----------HHQLIFFGRYHCLAKKPKCSECPLLQDCREGQKRYRA 214
Query: 621 S 621
S
Sbjct: 215 S 215
>gi|253732094|ref|ZP_04866259.1| DNA-(apurinic or apyrimidinic site) lyase [Staphylococcus aureus
subsp. aureus USA300_TCH959]
gi|418321648|ref|ZP_12932987.1| endonuclease III [Staphylococcus aureus subsp. aureus VCU006]
gi|418875393|ref|ZP_13429650.1| endonuclease III [Staphylococcus aureus subsp. aureus CIGC93]
gi|448742901|ref|ZP_21724815.1| DNA-(apurinic or apyrimidinic site) lyase [Staphylococcus aureus
KT/Y21]
gi|253724141|gb|EES92870.1| DNA-(apurinic or apyrimidinic site) lyase [Staphylococcus aureus
subsp. aureus USA300_TCH959]
gi|365224263|gb|EHM65528.1| endonuclease III [Staphylococcus aureus subsp. aureus VCU006]
gi|377769949|gb|EHT93715.1| endonuclease III [Staphylococcus aureus subsp. aureus CIGC93]
gi|445563588|gb|ELY19745.1| DNA-(apurinic or apyrimidinic site) lyase [Staphylococcus aureus
KT/Y21]
Length = 219
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 70/170 (41%), Gaps = 28/170 (16%)
Query: 453 IANTIKERGMNNMLAGRIKDFLNRLV-RDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
+ N I+ G+ A IK L+ + +G + P KE L S G+G K+
Sbjct: 73 LMNDIRSIGLYRNKAKNIKKLCQSLIDQFNGEI---------PQTHKE-LESLAGVGRKT 122
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
V + + VDT+V R++ RLG + ++ L + P + W R
Sbjct: 123 ANVVMSVAFDEPSLAVDTHVERVSKRLGINRWKDNVRQVEDRLCSVIP------RDRWNR 176
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASS 621
H+Q+I FG+ C KP C+ CP+ +CR + +S
Sbjct: 177 -----------SHHQLIFFGRYHCLARKPKCDICPLLEDCREGQKRYKAS 215
>gi|113969524|ref|YP_733317.1| A/G-specific DNA-adenine glycosylase [Shewanella sp. MR-4]
gi|113884208|gb|ABI38260.1| A/G-specific DNA-adenine glycosylase [Shewanella sp. MR-4]
Length = 372
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 30/143 (20%)
Query: 499 EYLLSFRGLGLKSVECVRLLTL--HHLAFPV-DTNVGRIAVR----LGWVPLQPLPESLQ 551
E +L+ G+G + V L+L HH P+ D NV R+ R GW +P+ E L
Sbjct: 110 EQVLALPGIGRSTAGAVLSLSLGQHH---PILDGNVKRVLARHGAIAGWPGQKPVEEQLW 166
Query: 552 LHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
+L P + IQKY + M+ G CT+SKPNC ACP+ +C
Sbjct: 167 QLTEQLTPG-QDIQKY----------------NQAMMDIGASICTRSKPNCAACPVAIDC 209
Query: 612 RHFASAFASSRLALPGPEEKAIV 634
+ + + PG + K +
Sbjct: 210 K---AQLMGRQTEFPGKKPKKTI 229
>gi|15924442|ref|NP_371976.1| endonuclease-like protein [Staphylococcus aureus subsp. aureus
Mu50]
gi|15927033|ref|NP_374566.1| endonuclease-like protein [Staphylococcus aureus subsp. aureus
N315]
gi|21283071|ref|NP_646159.1| endonuclease-like protein [Staphylococcus aureus subsp. aureus MW2]
gi|49483641|ref|YP_040865.1| endonuclease [Staphylococcus aureus subsp. aureus MRSA252]
gi|57650407|ref|YP_186336.1| endonuclease III [Staphylococcus aureus subsp. aureus COL]
gi|87160441|ref|YP_494040.1| endonuclease III [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|88195186|ref|YP_499987.1| endonuclease III [Staphylococcus aureus subsp. aureus NCTC 8325]
gi|148267938|ref|YP_001246881.1| endonuclease III [Staphylococcus aureus subsp. aureus JH9]
gi|150394001|ref|YP_001316676.1| endonuclease III [Staphylococcus aureus subsp. aureus JH1]
gi|151221575|ref|YP_001332397.1| hypothetical protein NWMN_1363 [Staphylococcus aureus subsp. aureus
str. Newman]
gi|156979771|ref|YP_001442030.1| endonuclease-like protein [Staphylococcus aureus subsp. aureus Mu3]
gi|161509620|ref|YP_001575279.1| DNA-(apurinic or apyrimidinic site) lyase [Staphylococcus aureus
subsp. aureus USA300_TCH1516]
gi|221140981|ref|ZP_03565474.1| DNA-(apurinic or apyrimidinic site) lyase [Staphylococcus aureus
subsp. aureus str. JKD6009]
gi|253315961|ref|ZP_04839174.1| endonuclease III [Staphylococcus aureus subsp. aureus str.
CF-Marseille]
gi|253733301|ref|ZP_04867466.1| endonuclease family protein [Staphylococcus aureus subsp. aureus
TCH130]
gi|255006239|ref|ZP_05144840.2| endonuclease III [Staphylococcus aureus subsp. aureus Mu50-omega]
gi|257425518|ref|ZP_05601943.1| endonuclease III [Staphylococcus aureus subsp. aureus 55/2053]
gi|257428177|ref|ZP_05604575.1| endonuclease III [Staphylococcus aureus subsp. aureus 65-1322]
gi|257430807|ref|ZP_05607189.1| endonuclease III [Staphylococcus aureus subsp. aureus 68-397]
gi|257433565|ref|ZP_05609923.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
E1410]
gi|257436407|ref|ZP_05612454.1| endonuclease III [Staphylococcus aureus subsp. aureus M876]
gi|258413301|ref|ZP_05681577.1| DNA-(apurinic or apyrimidinic site) lyase [Staphylococcus aureus
A9763]
gi|258422516|ref|ZP_05685424.1| endonuclease III [Staphylococcus aureus A9635]
gi|258426788|ref|ZP_05688008.1| endonuclease III [Staphylococcus aureus A9299]
gi|258444786|ref|ZP_05693115.1| endonuclease III/DNA-(apurinic or apyrimidinic site) lyase
[Staphylococcus aureus A8115]
gi|258447380|ref|ZP_05695524.1| DNA-(apurinic or apyrimidinic site) lyase [Staphylococcus aureus
A6300]
gi|258449735|ref|ZP_05697836.1| endonuclease III/DNA-(apurinic or apyrimidinic site) lyase
[Staphylococcus aureus A6224]
gi|258451110|ref|ZP_05699145.1| endonuclease III [Staphylococcus aureus A5948]
gi|258454596|ref|ZP_05702560.1| endonuclease III/DNA-(apurinic or apyrimidinic site) lyase
[Staphylococcus aureus A5937]
gi|262048978|ref|ZP_06021857.1| endonuclease-like protein [Staphylococcus aureus D30]
gi|262051624|ref|ZP_06023844.1| endonuclease-like protein [Staphylococcus aureus 930918-3]
gi|269203077|ref|YP_003282346.1| endonuclease III [Staphylococcus aureus subsp. aureus ED98]
gi|282892948|ref|ZP_06301183.1| endonuclease III [Staphylococcus aureus A8117]
gi|282904035|ref|ZP_06311923.1| endonuclease III [Staphylococcus aureus subsp. aureus C160]
gi|282905800|ref|ZP_06313655.1| endonuclease III/DNA-(apurinic or apyrimidinic site) lyase
[Staphylococcus aureus subsp. aureus Btn1260]
gi|282908770|ref|ZP_06316588.1| endonuclease III [Staphylococcus aureus subsp. aureus WW2703/97]
gi|282911031|ref|ZP_06318833.1| endonuclease III [Staphylococcus aureus subsp. aureus WBG10049]
gi|282914243|ref|ZP_06322030.1| endonuclease III [Staphylococcus aureus subsp. aureus M899]
gi|282919166|ref|ZP_06326901.1| endonuclease III [Staphylococcus aureus subsp. aureus C427]
gi|282921698|ref|ZP_06329415.1| endonuclease III [Staphylococcus aureus A9765]
gi|282924350|ref|ZP_06332024.1| endonuclease III [Staphylococcus aureus subsp. aureus C101]
gi|282927979|ref|ZP_06335588.1| endonuclease III [Staphylococcus aureus A10102]
gi|283958217|ref|ZP_06375668.1| endonuclease III [Staphylococcus aureus subsp. aureus A017934/97]
gi|284024451|ref|ZP_06378849.1| endonuclease III [Staphylococcus aureus subsp. aureus 132]
gi|293501269|ref|ZP_06667120.1| endonuclease III [Staphylococcus aureus subsp. aureus 58-424]
gi|293510230|ref|ZP_06668938.1| endonuclease III [Staphylococcus aureus subsp. aureus M809]
gi|293526825|ref|ZP_06671509.1| endonuclease III [Staphylococcus aureus subsp. aureus M1015]
gi|294848416|ref|ZP_06789162.1| endonuclease III [Staphylococcus aureus A9754]
gi|295407202|ref|ZP_06817002.1| endonuclease III [Staphylococcus aureus A8819]
gi|295427962|ref|ZP_06820594.1| endonuclease III [Staphylococcus aureus subsp. aureus EMRSA16]
gi|296275350|ref|ZP_06857857.1| endonuclease III [Staphylococcus aureus subsp. aureus MR1]
gi|297207888|ref|ZP_06924321.1| endonuclease III [Staphylococcus aureus subsp. aureus ATCC 51811]
gi|297244626|ref|ZP_06928509.1| endonuclease III [Staphylococcus aureus A8796]
gi|297591068|ref|ZP_06949706.1| endonuclease III [Staphylococcus aureus subsp. aureus MN8]
gi|300911973|ref|ZP_07129416.1| endonuclease III [Staphylococcus aureus subsp. aureus TCH70]
gi|304380966|ref|ZP_07363624.1| endonuclease III [Staphylococcus aureus subsp. aureus ATCC BAA-39]
gi|379014662|ref|YP_005290898.1| endonuclease III [Staphylococcus aureus subsp. aureus VC40]
gi|384862054|ref|YP_005744774.1| DNA-(apurinic or apyrimidinic site) lyase [Staphylococcus aureus
subsp. aureus str. JKD6008]
gi|384864677|ref|YP_005750036.1| endonuclease III [Staphylococcus aureus subsp. aureus ECT-R 2]
gi|384867638|ref|YP_005747834.1| endonuclease III [Staphylococcus aureus subsp. aureus TCH60]
gi|384869994|ref|YP_005752708.1| Endonuclease III / DNA-(Apurinic or apyrimidinic site) lyase
[Staphylococcus aureus subsp. aureus T0131]
gi|385781678|ref|YP_005757849.1| endonuclease III [Staphylococcus aureus subsp. aureus 11819-97]
gi|386831004|ref|YP_006237658.1| putative endonuclease [Staphylococcus aureus subsp. aureus HO 5096
0412]
gi|387143062|ref|YP_005731455.1| putative endonuclease [Staphylococcus aureus subsp. aureus TW20]
gi|387150593|ref|YP_005742157.1| Endonuclease III [Staphylococcus aureus 04-02981]
gi|387602727|ref|YP_005734248.1| endonuclease III [Staphylococcus aureus subsp. aureus ST398]
gi|387780553|ref|YP_005755351.1| putative endonuclease [Staphylococcus aureus subsp. aureus LGA251]
gi|404478800|ref|YP_006710230.1| endonuclease [Staphylococcus aureus 08BA02176]
gi|415682250|ref|ZP_11447566.1| DNA-(apurinic or apyrimidinic site) lyase [Staphylococcus aureus
subsp. aureus CGS00]
gi|415687470|ref|ZP_11451345.1| DNA-(apurinic or apyrimidinic site) lyase [Staphylococcus aureus
subsp. aureus CGS01]
gi|415693517|ref|ZP_11455296.1| DNA-(apurinic or apyrimidinic site) lyase [Staphylococcus aureus
subsp. aureus CGS03]
gi|416841209|ref|ZP_11904271.1| endonuclease III-like protein [Staphylococcus aureus O11]
gi|416847506|ref|ZP_11907188.1| endonuclease III-like protein [Staphylococcus aureus O46]
gi|417650517|ref|ZP_12300287.1| endonuclease III [Staphylococcus aureus subsp. aureus 21189]
gi|417651020|ref|ZP_12300783.1| endonuclease III [Staphylococcus aureus subsp. aureus 21172]
gi|417654353|ref|ZP_12304076.1| endonuclease III [Staphylococcus aureus subsp. aureus 21193]
gi|417797532|ref|ZP_12444728.1| endonuclease III [Staphylococcus aureus subsp. aureus 21305]
gi|417800228|ref|ZP_12447352.1| endonuclease III [Staphylococcus aureus subsp. aureus 21310]
gi|417800800|ref|ZP_12447908.1| endonuclease III [Staphylococcus aureus subsp. aureus 21318]
gi|417889192|ref|ZP_12533290.1| endonuclease III [Staphylococcus aureus subsp. aureus 21195]
gi|417889871|ref|ZP_12533950.1| endonuclease III [Staphylococcus aureus subsp. aureus 21200]
gi|417893008|ref|ZP_12537045.1| endonuclease III [Staphylococcus aureus subsp. aureus 21201]
gi|417897977|ref|ZP_12541903.1| endonuclease III [Staphylococcus aureus subsp. aureus 21259]
gi|417901945|ref|ZP_12545821.1| endonuclease III [Staphylococcus aureus subsp. aureus 21266]
gi|418277040|ref|ZP_12891721.1| endonuclease III [Staphylococcus aureus subsp. aureus 21178]
gi|418284474|ref|ZP_12897194.1| endonuclease III [Staphylococcus aureus subsp. aureus 21209]
gi|418308058|ref|ZP_12919718.1| endonuclease III [Staphylococcus aureus subsp. aureus 21194]
gi|418310302|ref|ZP_12921849.1| endonuclease III [Staphylococcus aureus subsp. aureus 21331]
gi|418312010|ref|ZP_12923523.1| endonuclease III [Staphylococcus aureus subsp. aureus 21334]
gi|418318782|ref|ZP_12930175.1| endonuclease III [Staphylococcus aureus subsp. aureus 21232]
gi|418424599|ref|ZP_12997716.1| endonuclease III [Staphylococcus aureus subsp. aureus VRS1]
gi|418427594|ref|ZP_13000601.1| endonuclease III [Staphylococcus aureus subsp. aureus VRS2]
gi|418430428|ref|ZP_13003343.1| endonuclease III [Staphylococcus aureus subsp. aureus VRS3a]
gi|418437069|ref|ZP_13008868.1| nth- endonuclease III [Staphylococcus aureus subsp. aureus VRS5]
gi|418439935|ref|ZP_13011640.1| nth- endonuclease III [Staphylococcus aureus subsp. aureus VRS6]
gi|418442991|ref|ZP_13014591.1| endonuclease III [Staphylococcus aureus subsp. aureus VRS7]
gi|418446050|ref|ZP_13017526.1| nth- endonuclease III [Staphylococcus aureus subsp. aureus VRS8]
gi|418448997|ref|ZP_13020385.1| nth- endonuclease III [Staphylococcus aureus subsp. aureus VRS9]
gi|418451816|ref|ZP_13023150.1| nth- endonuclease III [Staphylococcus aureus subsp. aureus VRS10]
gi|418454873|ref|ZP_13026133.1| nth- endonuclease III [Staphylococcus aureus subsp. aureus VRS11a]
gi|418457747|ref|ZP_13028949.1| nth- endonuclease III [Staphylococcus aureus subsp. aureus VRS11b]
gi|418565387|ref|ZP_13129794.1| endonuclease III [Staphylococcus aureus subsp. aureus 21264]
gi|418568531|ref|ZP_13132876.1| endonuclease III [Staphylococcus aureus subsp. aureus 21272]
gi|418571675|ref|ZP_13135901.1| endonuclease III [Staphylococcus aureus subsp. aureus 21283]
gi|418572827|ref|ZP_13137029.1| endonuclease III [Staphylococcus aureus subsp. aureus 21333]
gi|418579313|ref|ZP_13143408.1| endonuclease III [Staphylococcus aureus subsp. aureus CIG1114]
gi|418582318|ref|ZP_13146396.1| endonuclease III [Staphylococcus aureus subsp. aureus CIG1605]
gi|418595983|ref|ZP_13159566.1| endonuclease III [Staphylococcus aureus subsp. aureus 21342]
gi|418600322|ref|ZP_13163786.1| endonuclease III [Staphylococcus aureus subsp. aureus 21343]
gi|418603357|ref|ZP_13166744.1| endonuclease III [Staphylococcus aureus subsp. aureus 21345]
gi|418637965|ref|ZP_13200268.1| endonuclease III [Staphylococcus aureus subsp. aureus IS-3]
gi|418641956|ref|ZP_13204161.1| endonuclease III [Staphylococcus aureus subsp. aureus IS-24]
gi|418645410|ref|ZP_13207535.1| endonuclease III [Staphylococcus aureus subsp. aureus IS-55]
gi|418646852|ref|ZP_13208943.1| endonuclease III [Staphylococcus aureus subsp. aureus IS-88]
gi|418650682|ref|ZP_13212700.1| endonuclease III [Staphylococcus aureus subsp. aureus IS-91]
gi|418652933|ref|ZP_13214895.1| endonuclease III [Staphylococcus aureus subsp. aureus IS-99]
gi|418655275|ref|ZP_13217145.1| endonuclease III [Staphylococcus aureus subsp. aureus IS-105]
gi|418659548|ref|ZP_13221214.1| endonuclease III [Staphylococcus aureus subsp. aureus IS-111]
gi|418662092|ref|ZP_13223646.1| endonuclease III [Staphylococcus aureus subsp. aureus IS-122]
gi|418871662|ref|ZP_13426036.1| endonuclease III [Staphylococcus aureus subsp. aureus IS-125]
gi|418878302|ref|ZP_13432537.1| endonuclease III [Staphylococcus aureus subsp. aureus CIG1165]
gi|418881133|ref|ZP_13435351.1| endonuclease III [Staphylococcus aureus subsp. aureus CIG1213]
gi|418883987|ref|ZP_13438180.1| endonuclease III [Staphylococcus aureus subsp. aureus CIG1769]
gi|418886717|ref|ZP_13440865.1| endonuclease III [Staphylococcus aureus subsp. aureus CIG1150]
gi|418889270|ref|ZP_13443403.1| endonuclease III [Staphylococcus aureus subsp. aureus CIG1524]
gi|418892120|ref|ZP_13446233.1| endonuclease III [Staphylococcus aureus subsp. aureus CIG1176]
gi|418895152|ref|ZP_13449247.1| endonuclease III [Staphylococcus aureus subsp. aureus CIG1057]
gi|418898024|ref|ZP_13452094.1| endonuclease III [Staphylococcus aureus subsp. aureus CIGC341D]
gi|418900892|ref|ZP_13454949.1| endonuclease III [Staphylococcus aureus subsp. aureus CIG1214]
gi|418903693|ref|ZP_13457734.1| endonuclease III [Staphylococcus aureus subsp. aureus CIG1770]
gi|418906397|ref|ZP_13460423.1| endonuclease III [Staphylococcus aureus subsp. aureus CIGC345D]
gi|418909200|ref|ZP_13463199.1| endonuclease III [Staphylococcus aureus subsp. aureus CIG149]
gi|418912064|ref|ZP_13466045.1| endonuclease III [Staphylococcus aureus subsp. aureus CIG547]
gi|418914552|ref|ZP_13468524.1| endonuclease III [Staphylococcus aureus subsp. aureus CIGC340D]
gi|418917284|ref|ZP_13471243.1| endonuclease III [Staphylococcus aureus subsp. aureus CIG1267]
gi|418920533|ref|ZP_13474465.1| endonuclease III [Staphylococcus aureus subsp. aureus CIGC348]
gi|418923067|ref|ZP_13476983.1| endonuclease III [Staphylococcus aureus subsp. aureus CIG1233]
gi|418925716|ref|ZP_13479618.1| endonuclease III [Staphylococcus aureus subsp. aureus CIG2018]
gi|418928738|ref|ZP_13482624.1| endonuclease III [Staphylococcus aureus subsp. aureus CIG1612]
gi|418931527|ref|ZP_13485368.1| endonuclease III [Staphylococcus aureus subsp. aureus CIG1750]
gi|418934361|ref|ZP_13488183.1| endonuclease III [Staphylococcus aureus subsp. aureus CIGC128]
gi|418949102|ref|ZP_13501363.1| endonuclease III [Staphylococcus aureus subsp. aureus IS-157]
gi|418955573|ref|ZP_13507510.1| endonuclease III [Staphylococcus aureus subsp. aureus IS-189]
gi|418982396|ref|ZP_13530104.1| endonuclease III [Staphylococcus aureus subsp. aureus CIG1242]
gi|418986063|ref|ZP_13533749.1| endonuclease III [Staphylococcus aureus subsp. aureus CIG1500]
gi|418988459|ref|ZP_13536131.1| endonuclease III [Staphylococcus aureus subsp. aureus CIG1835]
gi|418991315|ref|ZP_13538976.1| endonuclease III [Staphylococcus aureus subsp. aureus CIG1096]
gi|419773575|ref|ZP_14299576.1| endonuclease III [Staphylococcus aureus subsp. aureus CO-23]
gi|419786057|ref|ZP_14311798.1| endonuclease III [Staphylococcus aureus subsp. aureus IS-M]
gi|421150469|ref|ZP_15610125.1| endonuclease III-like protein [Staphylococcus aureus subsp. aureus
str. Newbould 305]
gi|422743937|ref|ZP_16797915.1| endonuclease III [Staphylococcus aureus subsp. aureus MRSA177]
gi|422746325|ref|ZP_16800258.1| endonuclease III [Staphylococcus aureus subsp. aureus MRSA131]
gi|424773595|ref|ZP_18200652.1| endonuclease III [Staphylococcus aureus subsp. aureus CM05]
gi|424785290|ref|ZP_18212093.1| Endonuclease III [Staphylococcus aureus CN79]
gi|440707266|ref|ZP_20887965.1| endonuclease III [Staphylococcus aureus subsp. aureus 21282]
gi|440734904|ref|ZP_20914515.1| endonuclease III [Staphylococcus aureus subsp. aureus DSM 20231]
gi|443637858|ref|ZP_21121924.1| endonuclease III [Staphylococcus aureus subsp. aureus 21236]
gi|443638779|ref|ZP_21122812.1| endonuclease III [Staphylococcus aureus subsp. aureus 21196]
gi|13701250|dbj|BAB42545.1| endonuclease-like protein [Staphylococcus aureus subsp. aureus
N315]
gi|14247223|dbj|BAB57614.1| endonuclease-like protein [Staphylococcus aureus subsp. aureus
Mu50]
gi|21204511|dbj|BAB95207.1| endonuclease-like protein [Staphylococcus aureus subsp. aureus MW2]
gi|49241770|emb|CAG40461.1| putative endonuclease [Staphylococcus aureus subsp. aureus MRSA252]
gi|57284593|gb|AAW36687.1| endonuclease III [Staphylococcus aureus subsp. aureus COL]
gi|87126415|gb|ABD20929.1| endonuclease III [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87202744|gb|ABD30554.1| endonuclease III, putative [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|147741007|gb|ABQ49305.1| endonuclease III / DNA-(apurinic or apyrimidinic site) lyase
[Staphylococcus aureus subsp. aureus JH9]
gi|149946453|gb|ABR52389.1| endonuclease III [Staphylococcus aureus subsp. aureus JH1]
gi|150374375|dbj|BAF67635.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
str. Newman]
gi|156721906|dbj|BAF78323.1| endonuclease-like protein [Staphylococcus aureus subsp. aureus Mu3]
gi|160368429|gb|ABX29400.1| DNA-(apurinic or apyrimidinic site) lyase [Staphylococcus aureus
subsp. aureus USA300_TCH1516]
gi|253728841|gb|EES97570.1| endonuclease family protein [Staphylococcus aureus subsp. aureus
TCH130]
gi|257271975|gb|EEV04113.1| endonuclease III [Staphylococcus aureus subsp. aureus 55/2053]
gi|257275018|gb|EEV06505.1| endonuclease III [Staphylococcus aureus subsp. aureus 65-1322]
gi|257278935|gb|EEV09554.1| endonuclease III [Staphylococcus aureus subsp. aureus 68-397]
gi|257281658|gb|EEV11795.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
E1410]
gi|257284689|gb|EEV14809.1| endonuclease III [Staphylococcus aureus subsp. aureus M876]
gi|257839865|gb|EEV64333.1| DNA-(apurinic or apyrimidinic site) lyase [Staphylococcus aureus
A9763]
gi|257847273|gb|EEV71279.1| endonuclease III [Staphylococcus aureus A9635]
gi|257849949|gb|EEV73907.1| endonuclease III [Staphylococcus aureus A9299]
gi|257850279|gb|EEV74232.1| endonuclease III/DNA-(apurinic or apyrimidinic site) lyase
[Staphylococcus aureus A8115]
gi|257853571|gb|EEV76530.1| DNA-(apurinic or apyrimidinic site) lyase [Staphylococcus aureus
A6300]
gi|257856983|gb|EEV79883.1| endonuclease III/DNA-(apurinic or apyrimidinic site) lyase
[Staphylococcus aureus A6224]
gi|257861165|gb|EEV83978.1| endonuclease III [Staphylococcus aureus A5948]
gi|257862979|gb|EEV85743.1| endonuclease III/DNA-(apurinic or apyrimidinic site) lyase
[Staphylococcus aureus A5937]
gi|259160465|gb|EEW45489.1| endonuclease-like protein [Staphylococcus aureus 930918-3]
gi|259162910|gb|EEW47473.1| endonuclease-like protein [Staphylococcus aureus D30]
gi|262075367|gb|ACY11340.1| endonuclease III [Staphylococcus aureus subsp. aureus ED98]
gi|269940945|emb|CBI49329.1| putative endonuclease [Staphylococcus aureus subsp. aureus TW20]
gi|282313737|gb|EFB44130.1| endonuclease III [Staphylococcus aureus subsp. aureus C101]
gi|282316976|gb|EFB47350.1| endonuclease III [Staphylococcus aureus subsp. aureus C427]
gi|282322311|gb|EFB52635.1| endonuclease III [Staphylococcus aureus subsp. aureus M899]
gi|282324726|gb|EFB55036.1| endonuclease III [Staphylococcus aureus subsp. aureus WBG10049]
gi|282327034|gb|EFB57329.1| endonuclease III [Staphylococcus aureus subsp. aureus WW2703/97]
gi|282331092|gb|EFB60606.1| endonuclease III/DNA-(apurinic or apyrimidinic site) lyase
[Staphylococcus aureus subsp. aureus Btn1260]
gi|282590276|gb|EFB95356.1| endonuclease III [Staphylococcus aureus A10102]
gi|282593960|gb|EFB98949.1| endonuclease III [Staphylococcus aureus A9765]
gi|282595653|gb|EFC00617.1| endonuclease III [Staphylococcus aureus subsp. aureus C160]
gi|282764945|gb|EFC05070.1| endonuclease III [Staphylococcus aureus A8117]
gi|283470665|emb|CAQ49876.1| endonuclease III [Staphylococcus aureus subsp. aureus ST398]
gi|283790366|gb|EFC29183.1| endonuclease III [Staphylococcus aureus subsp. aureus A017934/97]
gi|285817132|gb|ADC37619.1| Endonuclease III [Staphylococcus aureus 04-02981]
gi|290920383|gb|EFD97447.1| endonuclease III [Staphylococcus aureus subsp. aureus M1015]
gi|291096274|gb|EFE26535.1| endonuclease III [Staphylococcus aureus subsp. aureus 58-424]
gi|291467174|gb|EFF09692.1| endonuclease III [Staphylococcus aureus subsp. aureus M809]
gi|294824442|gb|EFG40865.1| endonuclease III [Staphylococcus aureus A9754]
gi|294967915|gb|EFG43944.1| endonuclease III [Staphylococcus aureus A8819]
gi|295128320|gb|EFG57954.1| endonuclease III [Staphylococcus aureus subsp. aureus EMRSA16]
gi|296887462|gb|EFH26362.1| endonuclease III [Staphylococcus aureus subsp. aureus ATCC 51811]
gi|297178656|gb|EFH37902.1| endonuclease III [Staphylococcus aureus A8796]
gi|297575954|gb|EFH94670.1| endonuclease III [Staphylococcus aureus subsp. aureus MN8]
gi|300886219|gb|EFK81421.1| endonuclease III [Staphylococcus aureus subsp. aureus TCH70]
gi|302751283|gb|ADL65460.1| DNA-(apurinic or apyrimidinic site) lyase [Staphylococcus aureus
subsp. aureus str. JKD6008]
gi|304340491|gb|EFM06427.1| endonuclease III [Staphylococcus aureus subsp. aureus ATCC BAA-39]
gi|312438143|gb|ADQ77214.1| endonuclease III [Staphylococcus aureus subsp. aureus TCH60]
gi|312829844|emb|CBX34686.1| endonuclease III [Staphylococcus aureus subsp. aureus ECT-R 2]
gi|315129167|gb|EFT85162.1| DNA-(apurinic or apyrimidinic site) lyase [Staphylococcus aureus
subsp. aureus CGS03]
gi|315195350|gb|EFU25737.1| DNA-(apurinic or apyrimidinic site) lyase [Staphylococcus aureus
subsp. aureus CGS00]
gi|315197802|gb|EFU28136.1| DNA-(apurinic or apyrimidinic site) lyase [Staphylococcus aureus
subsp. aureus CGS01]
gi|320140376|gb|EFW32232.1| endonuclease III [Staphylococcus aureus subsp. aureus MRSA131]
gi|320142697|gb|EFW34500.1| endonuclease III [Staphylococcus aureus subsp. aureus MRSA177]
gi|323439545|gb|EGA97266.1| endonuclease III-like protein [Staphylococcus aureus O11]
gi|323442216|gb|EGA99847.1| endonuclease III-like protein [Staphylococcus aureus O46]
gi|329314129|gb|AEB88542.1| Endonuclease III / DNA-(Apurinic or apyrimidinic site) lyase
[Staphylococcus aureus subsp. aureus T0131]
gi|329723209|gb|EGG59740.1| endonuclease III [Staphylococcus aureus subsp. aureus 21189]
gi|329727204|gb|EGG63660.1| endonuclease III [Staphylococcus aureus subsp. aureus 21172]
gi|329731338|gb|EGG67704.1| endonuclease III [Staphylococcus aureus subsp. aureus 21193]
gi|334267024|gb|EGL85494.1| endonuclease III [Staphylococcus aureus subsp. aureus 21305]
gi|334271694|gb|EGL90077.1| endonuclease III [Staphylococcus aureus subsp. aureus 21310]
gi|334277680|gb|EGL95904.1| endonuclease III [Staphylococcus aureus subsp. aureus 21318]
gi|341845784|gb|EGS86986.1| endonuclease III [Staphylococcus aureus subsp. aureus 21266]
gi|341849479|gb|EGS90622.1| endonuclease III [Staphylococcus aureus subsp. aureus 21259]
gi|341852649|gb|EGS93536.1| endonuclease III [Staphylococcus aureus subsp. aureus 21195]
gi|341855564|gb|EGS96408.1| endonuclease III [Staphylococcus aureus subsp. aureus 21200]
gi|341856373|gb|EGS97212.1| endonuclease III [Staphylococcus aureus subsp. aureus 21201]
gi|344177655|emb|CCC88133.1| putative endonuclease [Staphylococcus aureus subsp. aureus LGA251]
gi|364522667|gb|AEW65417.1| endonuclease III [Staphylococcus aureus subsp. aureus 11819-97]
gi|365173334|gb|EHM63902.1| endonuclease III [Staphylococcus aureus subsp. aureus 21209]
gi|365173830|gb|EHM64264.1| endonuclease III [Staphylococcus aureus subsp. aureus 21178]
gi|365237147|gb|EHM78008.1| endonuclease III [Staphylococcus aureus subsp. aureus 21331]
gi|365239132|gb|EHM79954.1| endonuclease III [Staphylococcus aureus subsp. aureus 21334]
gi|365242087|gb|EHM82813.1| endonuclease III [Staphylococcus aureus subsp. aureus 21194]
gi|365242124|gb|EHM82846.1| endonuclease III [Staphylococcus aureus subsp. aureus 21232]
gi|371974056|gb|EHO91398.1| endonuclease III [Staphylococcus aureus subsp. aureus 21264]
gi|371979359|gb|EHO96592.1| endonuclease III [Staphylococcus aureus subsp. aureus 21272]
gi|371979491|gb|EHO96722.1| endonuclease III [Staphylococcus aureus subsp. aureus 21283]
gi|371983759|gb|EHP00899.1| endonuclease III [Staphylococcus aureus subsp. aureus 21333]
gi|374363359|gb|AEZ37464.1| endonuclease III [Staphylococcus aureus subsp. aureus VC40]
gi|374393172|gb|EHQ64487.1| endonuclease III [Staphylococcus aureus subsp. aureus 21345]
gi|374394263|gb|EHQ65550.1| endonuclease III [Staphylococcus aureus subsp. aureus 21343]
gi|374399238|gb|EHQ70380.1| endonuclease III [Staphylococcus aureus subsp. aureus 21342]
gi|375018411|gb|EHS11991.1| endonuclease III [Staphylococcus aureus subsp. aureus IS-24]
gi|375020855|gb|EHS14366.1| endonuclease III [Staphylococcus aureus subsp. aureus IS-99]
gi|375023189|gb|EHS16652.1| endonuclease III [Staphylococcus aureus subsp. aureus IS-3]
gi|375023478|gb|EHS16934.1| endonuclease III [Staphylococcus aureus subsp. aureus IS-55]
gi|375027968|gb|EHS21326.1| endonuclease III [Staphylococcus aureus subsp. aureus IS-91]
gi|375031870|gb|EHS25131.1| endonuclease III [Staphylococcus aureus subsp. aureus IS-88]
gi|375034923|gb|EHS28065.1| endonuclease III [Staphylococcus aureus subsp. aureus IS-111]
gi|375037037|gb|EHS30091.1| endonuclease III [Staphylococcus aureus subsp. aureus IS-122]
gi|375037606|gb|EHS30628.1| endonuclease III [Staphylococcus aureus subsp. aureus IS-105]
gi|375367942|gb|EHS71875.1| endonuclease III [Staphylococcus aureus subsp. aureus IS-125]
gi|375369765|gb|EHS73628.1| endonuclease III [Staphylococcus aureus subsp. aureus IS-157]
gi|375370659|gb|EHS74457.1| endonuclease III [Staphylococcus aureus subsp. aureus IS-189]
gi|377694424|gb|EHT18789.1| endonuclease III [Staphylococcus aureus subsp. aureus CIG1165]
gi|377694958|gb|EHT19322.1| endonuclease III [Staphylococcus aureus subsp. aureus CIG1057]
gi|377697340|gb|EHT21695.1| endonuclease III [Staphylococcus aureus subsp. aureus CIG1114]
gi|377703360|gb|EHT27676.1| endonuclease III [Staphylococcus aureus subsp. aureus CIG1214]
gi|377704677|gb|EHT28986.1| endonuclease III [Staphylococcus aureus subsp. aureus CIG1242]
gi|377705881|gb|EHT30185.1| endonuclease III [Staphylococcus aureus subsp. aureus CIG1500]
gi|377710728|gb|EHT34966.1| endonuclease III [Staphylococcus aureus subsp. aureus CIG1605]
gi|377714322|gb|EHT38523.1| endonuclease III [Staphylococcus aureus subsp. aureus CIG1769]
gi|377714809|gb|EHT39008.1| endonuclease III [Staphylococcus aureus subsp. aureus CIG1750]
gi|377717552|gb|EHT41727.1| endonuclease III [Staphylococcus aureus subsp. aureus CIG1835]
gi|377722321|gb|EHT46447.1| endonuclease III [Staphylococcus aureus subsp. aureus CIG547]
gi|377723437|gb|EHT47562.1| endonuclease III [Staphylococcus aureus subsp. aureus CIG1096]
gi|377725670|gb|EHT49783.1| endonuclease III [Staphylococcus aureus subsp. aureus CIG1150]
gi|377730414|gb|EHT54481.1| endonuclease III [Staphylococcus aureus subsp. aureus CIG1176]
gi|377731323|gb|EHT55379.1| endonuclease III [Staphylococcus aureus subsp. aureus CIG1213]
gi|377735026|gb|EHT59062.1| endonuclease III [Staphylococcus aureus subsp. aureus CIG1233]
gi|377738650|gb|EHT62659.1| endonuclease III [Staphylococcus aureus subsp. aureus CIG1612]
gi|377742708|gb|EHT66693.1| endonuclease III [Staphylococcus aureus subsp. aureus CIG1770]
gi|377744785|gb|EHT68762.1| endonuclease III [Staphylococcus aureus subsp. aureus CIG2018]
gi|377750458|gb|EHT74396.1| endonuclease III [Staphylococcus aureus subsp. aureus CIG1267]
gi|377752606|gb|EHT76525.1| endonuclease III [Staphylococcus aureus subsp. aureus CIG149]
gi|377752778|gb|EHT76696.1| endonuclease III [Staphylococcus aureus subsp. aureus CIG1524]
gi|377758054|gb|EHT81942.1| endonuclease III [Staphylococcus aureus subsp. aureus CIGC340D]
gi|377761059|gb|EHT84935.1| endonuclease III [Staphylococcus aureus subsp. aureus CIGC341D]
gi|377763302|gb|EHT87158.1| endonuclease III [Staphylococcus aureus subsp. aureus CIGC345D]
gi|377764259|gb|EHT88112.1| endonuclease III [Staphylococcus aureus subsp. aureus CIGC348]
gi|377770455|gb|EHT94216.1| endonuclease III [Staphylococcus aureus subsp. aureus CIGC128]
gi|383361358|gb|EID38732.1| endonuclease III [Staphylococcus aureus subsp. aureus IS-M]
gi|383972635|gb|EID88666.1| endonuclease III [Staphylococcus aureus subsp. aureus CO-23]
gi|385196396|emb|CCG16024.1| putative endonuclease [Staphylococcus aureus subsp. aureus HO 5096
0412]
gi|387718147|gb|EIK06133.1| endonuclease III [Staphylococcus aureus subsp. aureus VRS2]
gi|387718397|gb|EIK06367.1| endonuclease III [Staphylococcus aureus subsp. aureus VRS3a]
gi|387719807|gb|EIK07738.1| endonuclease III [Staphylococcus aureus subsp. aureus VRS1]
gi|387727370|gb|EIK14886.1| nth- endonuclease III [Staphylococcus aureus subsp. aureus VRS5]
gi|387730556|gb|EIK17934.1| nth- endonuclease III [Staphylococcus aureus subsp. aureus VRS6]
gi|387735978|gb|EIK23088.1| nth- endonuclease III [Staphylococcus aureus subsp. aureus VRS8]
gi|387737007|gb|EIK24088.1| endonuclease III [Staphylococcus aureus subsp. aureus VRS7]
gi|387737252|gb|EIK24326.1| nth- endonuclease III [Staphylococcus aureus subsp. aureus VRS9]
gi|387744697|gb|EIK31461.1| nth- endonuclease III [Staphylococcus aureus subsp. aureus VRS10]
gi|387745365|gb|EIK32123.1| nth- endonuclease III [Staphylococcus aureus subsp. aureus VRS11a]
gi|387746952|gb|EIK33669.1| nth- endonuclease III [Staphylococcus aureus subsp. aureus VRS11b]
gi|394329859|gb|EJE55961.1| endonuclease III-like protein [Staphylococcus aureus subsp. aureus
str. Newbould 305]
gi|402347234|gb|EJU82280.1| endonuclease III [Staphylococcus aureus subsp. aureus CM05]
gi|404440289|gb|AFR73482.1| putative endonuclease [Staphylococcus aureus 08BA02176]
gi|421956700|gb|EKU09029.1| Endonuclease III [Staphylococcus aureus CN79]
gi|436430999|gb|ELP28353.1| endonuclease III [Staphylococcus aureus subsp. aureus DSM 20231]
gi|436506022|gb|ELP41861.1| endonuclease III [Staphylococcus aureus subsp. aureus 21282]
gi|443404895|gb|ELS63512.1| endonuclease III [Staphylococcus aureus subsp. aureus 21236]
gi|443408613|gb|ELS67131.1| endonuclease III [Staphylococcus aureus subsp. aureus 21196]
Length = 219
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 70/170 (41%), Gaps = 28/170 (16%)
Query: 453 IANTIKERGMNNMLAGRIKDFLNRLV-RDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
+ N I+ G+ A IK L+ + +G + P KE L S G+G K+
Sbjct: 73 LMNDIRSIGLYRNKAKNIKKLCQSLIDQFNGEI---------PQTHKE-LESLAGVGRKT 122
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
V + + VDT+V R++ RLG + ++ L + P + W R
Sbjct: 123 ANVVMSVAFDEPSLAVDTHVERVSKRLGINRWKDNVRQVEDRLCSVIP------RDRWNR 176
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASS 621
H+Q+I FG+ C KP C+ CP+ +CR + +S
Sbjct: 177 -----------SHHQLIFFGRYHCLARKPKCDICPLLEDCREGQKRYKAS 215
>gi|406875070|gb|EKD24905.1| hypothetical protein ACD_80C00145G0039 [uncultured bacterium (gcode
4)]
Length = 231
Score = 49.3 bits (116), Expect = 0.011, Method: Composition-based stats.
Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 19/129 (14%)
Query: 494 PDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 553
PD +E L+ F G+G+K+ + V + L VDT++ R++ RLG V PE
Sbjct: 116 PDTLEE-LMQFPGIGIKTAKVVAHVLYDKLFIAVDTHIHRVSNRLGLVKTTS-PEKTS-- 171
Query: 554 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
E ++K ++ + H+ ++ FG+ +CT P C C ++ C +
Sbjct: 172 --------ELLEK-------RIPDNYKHLAHHALVLFGRYYCTARNPKCEICKLKQICLY 216
Query: 614 FASAFASSR 622
+ + +S+
Sbjct: 217 YKANVIASK 225
>gi|420239451|ref|ZP_14743771.1| endonuclease III [Rhizobium sp. CF080]
gi|398080505|gb|EJL71315.1| endonuclease III [Rhizobium sp. CF080]
Length = 267
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 67/160 (41%), Gaps = 27/160 (16%)
Query: 453 IANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSV 512
+ IK G+ A + L+ + GS +VP K +E L+ G+G K+
Sbjct: 110 VTQYIKTIGLYRNKAKNVIALCRMLIDEFGS-------EVP--KTREELIRLPGVGRKTA 160
Query: 513 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRL 572
V + VDT+V RIA RL P + P+ ++ +LL++ P
Sbjct: 161 NVVMSMAFGVPTLAVDTHVFRIANRLLMAPGK-TPDEVEENLLKVIP------------- 206
Query: 573 CKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
DQ L+ H+ +I G+ C KP C C + CR
Sbjct: 207 ---DQ-YLFHAHHWLILHGRYCCKARKPECERCVIADLCR 242
>gi|288556139|ref|YP_003428074.1| endonuclease III [Bacillus pseudofirmus OF4]
gi|288547299|gb|ADC51182.1| endonuclease III [Bacillus pseudofirmus OF4]
Length = 218
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 68/165 (41%), Gaps = 26/165 (15%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
A + ++ I+ G+ A IK LV + +VP D+ + L+ G+
Sbjct: 68 APLEELEEDIRRIGLFRSKAKNIKKLSQSLVEQYNG-------EVPKDR--DELVKLAGV 118
Query: 508 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 567
G K+ V + A VDT+V R++ RLG + ++ L++ P+
Sbjct: 119 GRKTANVVTSVAFGVPAIAVDTHVERVSKRLGICRWKDNVNVVEQTLMKKIPI------E 172
Query: 568 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
LW + H+++I FG+ C P C CP+ CR
Sbjct: 173 LWS-----------DSHHRLIFFGRYHCKAQSPKCETCPLLDRCR 206
>gi|225419859|ref|ZP_03762162.1| hypothetical protein CLOSTASPAR_06200 [Clostridium asparagiforme
DSM 15981]
gi|225041483|gb|EEG51729.1| hypothetical protein CLOSTASPAR_06200 [Clostridium asparagiforme
DSM 15981]
Length = 219
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 69/164 (42%), Gaps = 27/164 (16%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
AD+ ++ I G +M A I LV HGS +VP + E L + G+
Sbjct: 76 ADLKELEQDIHSTGFYHMKAKNIIACCRDLVDKHGS-------EVP--RTIEELTALAGV 126
Query: 508 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 567
G K+ +R + + VDT+V RI+ +LG + P ++ L++ P
Sbjct: 127 GRKTANVIRGNIYNEPSIVVDTHVKRISRKLGLTKSED-PVKIEQDLMKALP-------- 177
Query: 568 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
D L+ +H +IT G+ C +P C C +R C
Sbjct: 178 -------RDHWILWNIH--IITLGRSICIARRPKCGECFLREFC 212
>gi|114046757|ref|YP_737307.1| A/G-specific DNA-adenine glycosylase [Shewanella sp. MR-7]
gi|113888199|gb|ABI42250.1| A/G-specific DNA-adenine glycosylase [Shewanella sp. MR-7]
Length = 372
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 56/121 (46%), Gaps = 27/121 (22%)
Query: 499 EYLLSFRGLGLKSVECVRLLTL--HHLAFPV-DTNVGRIAVR----LGWVPLQPLPESLQ 551
E +L+ G+G + V L+L HH P+ D NV R+ R GW +P+ E L
Sbjct: 110 EQVLALPGIGRSTAGAVLSLSLGQHH---PILDGNVKRVLARHGAIAGWPGQKPVEEQLW 166
Query: 552 LHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
+L P + IQKY + M+ G CT+SKPNC ACP+ +C
Sbjct: 167 QLTEQLTPE-QDIQKY----------------NQAMMDIGASICTRSKPNCAACPVAVDC 209
Query: 612 R 612
+
Sbjct: 210 K 210
>gi|405363125|ref|ZP_11026123.1| Endonuclease III [Chondromyces apiculatus DSM 436]
gi|397090068|gb|EJJ20954.1| Endonuclease III [Myxococcus sp. (contaminant ex DSM 436)]
Length = 227
Score = 49.3 bits (116), Expect = 0.011, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 18/115 (15%)
Query: 499 EYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY 558
+ L SF+G+G K + H A VD +V R+ R G+V + PE+
Sbjct: 124 QVLQSFKGVGPKCAHLALGIACGHEAISVDIHVHRVTNRWGYVQART-PEA--------- 173
Query: 559 PVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
+E+++ L PR + EL+ ++ FGK CT ++P C+ CP+ CR
Sbjct: 174 -TMEALEAQL-PRAWWV------ELNRLLVPFGKHICTGTRPKCSTCPVLDACRQ 220
>gi|383642104|ref|ZP_09954510.1| endonuclease III [Sphingomonas elodea ATCC 31461]
Length = 221
Score = 49.3 bits (116), Expect = 0.011, Method: Composition-based stats.
Identities = 41/155 (26%), Positives = 60/155 (38%), Gaps = 27/155 (17%)
Query: 457 IKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVR 516
IK G+ N A + L+RDHG VP D+ + L G+G K+ V
Sbjct: 76 IKTIGLFNTKAKNVIALSEALIRDHGGA-------VPEDR--DALEQLPGVGRKTANVVM 126
Query: 517 LLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLD 576
H F VDT++ R+ R G P + P +++L L + P
Sbjct: 127 NTAFGHETFAVDTHIFRVGNRTGLAPGKT-PLAVELKLEKAVP----------------- 168
Query: 577 QRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
Q H+ +I G+ C P C CP+ C
Sbjct: 169 QPFRLHAHHWLILHGRYICKARTPECWRCPVADLC 203
>gi|418316454|ref|ZP_12927892.1| endonuclease III [Staphylococcus aureus subsp. aureus 21340]
gi|365241138|gb|EHM81893.1| endonuclease III [Staphylococcus aureus subsp. aureus 21340]
Length = 219
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 70/170 (41%), Gaps = 28/170 (16%)
Query: 453 IANTIKERGMNNMLAGRIKDFLNRLV-RDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
+ N I+ G+ A IK L+ + +G + P KE L S G+G K+
Sbjct: 73 LMNDIRSIGLYRNKAKNIKKLCQSLIDQFNGEI---------PQTHKE-LESLAGVGRKT 122
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
V + + VDT+V R++ RLG + ++ L + P + W R
Sbjct: 123 ANVVMSVAFDEPSLAVDTHVERVSKRLGINRWKDNVRQVEDRLCSVIP------RDRWNR 176
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASS 621
H+Q+I FG+ C KP C+ CP+ +CR + +S
Sbjct: 177 -----------SHHQLIFFGRYHCLARKPKCDICPLLEDCREGQKRYKAS 215
>gi|224026016|ref|ZP_03644382.1| hypothetical protein BACCOPRO_02769 [Bacteroides coprophilus DSM
18228]
gi|224019252|gb|EEF77250.1| hypothetical protein BACCOPRO_02769 [Bacteroides coprophilus DSM
18228]
Length = 216
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 66/155 (42%), Gaps = 42/155 (27%)
Query: 461 GMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTL 520
GM ML +KDF HG V PD E L+ G+G K+ ++ +
Sbjct: 92 GMAQML---VKDF-------HGEV---------PDTL-EQLVKLPGVGRKTANVIQSVVF 131
Query: 521 HHLAFPVDTNVGRIAVRLGWVP---LQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQ 577
+ A VDT+V R++ R+G VP PL + +KYL + + +
Sbjct: 132 NKAAMAVDTHVFRVSHRIGLVPQTCTTPL----------------ATEKYL---IKYIPE 172
Query: 578 RTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
+ H+ +I G+ CT P C +C + G C+
Sbjct: 173 ELIPTAHHWLILHGRYVCTARSPKCESCGLNGLCK 207
>gi|418633032|ref|ZP_13195449.1| endonuclease III [Staphylococcus epidermidis VCU129]
gi|420190076|ref|ZP_14696020.1| endonuclease III [Staphylococcus epidermidis NIHLM037]
gi|420204377|ref|ZP_14709935.1| endonuclease III [Staphylococcus epidermidis NIHLM015]
gi|374839851|gb|EHS03358.1| endonuclease III [Staphylococcus epidermidis VCU129]
gi|394258967|gb|EJE03837.1| endonuclease III [Staphylococcus epidermidis NIHLM037]
gi|394273387|gb|EJE17818.1| endonuclease III [Staphylococcus epidermidis NIHLM015]
Length = 219
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 65/160 (40%), Gaps = 26/160 (16%)
Query: 453 IANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSV 512
+ N I+ G+ A IK + L+ E P KE L S G+G K+
Sbjct: 73 LQNDIRSIGLYRNKAKNIKKLCHSLI--------EQFNGQIPQTHKE-LESLAGVGRKTA 123
Query: 513 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRL 572
V + + VDT+V R++ RLG + ++ L ++ P + W +
Sbjct: 124 NVVMSVAFGEPSLAVDTHVERVSKRLGINRWKDNVRQVEDRLCDIIP------RDRWNK- 176
Query: 573 CKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
H+Q+I FG+ C KP C CP+ +CR
Sbjct: 177 ----------SHHQLIFFGRYHCLARKPKCEICPLLNDCR 206
>gi|260437726|ref|ZP_05791542.1| endonuclease III [Butyrivibrio crossotus DSM 2876]
gi|292809748|gb|EFF68953.1| endonuclease III [Butyrivibrio crossotus DSM 2876]
Length = 211
Score = 49.3 bits (116), Expect = 0.011, Method: Composition-based stats.
Identities = 42/165 (25%), Positives = 68/165 (41%), Gaps = 27/165 (16%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
AD+ ++ I+ G + A IK L+ H +VP D E L + G+
Sbjct: 69 ADIKELEEDIRSTGFYHNKAKNIKACATELLERHNG-------EVPRDI--ESLTALSGV 119
Query: 508 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 567
G K+ +R H + VDT+V RI+ +LG + P ++ L+++ P
Sbjct: 120 GRKTANVIRGNIYHEPSIVVDTHVKRISRKLGLTK-EDDPVKIEFDLMKVLPK------- 171
Query: 568 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
D LY + Q+I G+ C P C C +R C+
Sbjct: 172 --------DHWILYNI--QIIRLGRNICFARNPKCEECFLRDLCK 206
>gi|198474869|ref|XP_002132792.1| GA26017 [Drosophila pseudoobscura pseudoobscura]
gi|198138583|gb|EDY70194.1| GA26017 [Drosophila pseudoobscura pseudoobscura]
Length = 396
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 82/189 (43%), Gaps = 35/189 (18%)
Query: 435 HTKDSLDWEAVRCADVNKI-ANTIKERGMNNMLAGRIKDFLN---------RLVRDHGSV 484
TKD +EA+ N++ A T+ + +M G ++ L+ + ++ +
Sbjct: 216 QTKDQTTYEAM-----NRLKARTLTPDSLKDMPIGELETLLHPVSFYKNKAKYLKQTTQI 270
Query: 485 DLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHL-AFPVDTNVGRIAVRLGWVPL 543
++ P+ AKE L++ G+G K + L VD +V RI+ RLGW+P
Sbjct: 271 LIDKYDSDIPNNAKE-LIALPGVGPKMAHICMAVAWDKLTGIGVDVHVHRISNRLGWLP- 328
Query: 544 QPLPESLQLHLLELYPVLES-IQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNC 602
+P E Q + LES + LW E+++ + FG+ CT KPNC
Sbjct: 329 RPTKEPEQTRV-----ALESWLPSTLW-----------AEVNHLFVGFGQTVCTPLKPNC 372
Query: 603 NACPMRGEC 611
C + C
Sbjct: 373 GQCLNKDIC 381
>gi|150020420|ref|YP_001305774.1| HhH-GPD family protein [Thermosipho melanesiensis BI429]
gi|149792941|gb|ABR30389.1| HhH-GPD family protein [Thermosipho melanesiensis BI429]
Length = 216
Score = 49.3 bits (116), Expect = 0.011, Method: Composition-based stats.
Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 21/165 (12%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
K+A IK G N+ A RIK+ LN L + + +L+++ P +E LL +G+G ++
Sbjct: 68 KLAEIIKPAGFFNIKAERIKNLLNFLKKR--NFNLKYVEKEP--NLREKLLKIKGIGKET 123
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
+ + L F VD R+ R+ + +E Y ++ + +P+
Sbjct: 124 ADSILLYAFEFPIFVVDAYTKRLLKRIYGLN------------IEDYDKIQELFHKNYPK 171
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFAS 616
D R E H ++ K +C K KP C+ C +C + S
Sbjct: 172 ----DTRLYQEFHGLIVEHAKKYCRK-KPLCSKCFFGKKCNYLTS 211
>gi|423713258|ref|ZP_17687518.1| endonuclease III [Bartonella vinsonii subsp. arupensis OK-94-513]
gi|395423299|gb|EJF89494.1| endonuclease III [Bartonella vinsonii subsp. arupensis OK-94-513]
Length = 246
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 66/161 (40%), Gaps = 27/161 (16%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
+IA I+ G+ A + N L+ +G PDK +E L+S G+G K+
Sbjct: 89 EIARHIRTIGLWRAKARNVYALCNFLIDQYGGK--------VPDK-REDLMSLPGVGRKT 139
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
V + H VDT++ R+ RLG P + PE ++ LL++ PV
Sbjct: 140 ANVVLNVAFGHPTLAVDTHILRLGNRLGLAPGKT-PEIVEEKLLKIIPV----------- 187
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
L H+ +I G+ C K C C + C+
Sbjct: 188 ------HYLRHAHHWLILHGRYICQARKTQCTRCIIADLCK 222
>gi|410583666|ref|ZP_11320771.1| DNA-(apurinic or apyrimidinic site) lyase [Thermaerobacter
subterraneus DSM 13965]
gi|410504528|gb|EKP94038.1| DNA-(apurinic or apyrimidinic site) lyase [Thermaerobacter
subterraneus DSM 13965]
Length = 258
Score = 49.3 bits (116), Expect = 0.011, Method: Composition-based stats.
Identities = 44/154 (28%), Positives = 64/154 (41%), Gaps = 33/154 (21%)
Query: 458 KERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRL 517
+ + N + A RI LV HG VP + +E L+ G+G K+ V
Sbjct: 100 RNKARNLLAACRI------LVERHGG-------QVP--RTREELMQLPGVGRKTANVVLS 144
Query: 518 LTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQ 577
A VDT+V R+A RLG + PE ++ L+E +P E W R
Sbjct: 145 NAFGIPAIAVDTHVFRVARRLG-LATGTTPERVEQELMEKFPEAE------WSRA----- 192
Query: 578 RTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
H+ +I G+ C P C AC +R +C
Sbjct: 193 ------HHWLIWHGRRICHARNPRCQACALRPDC 220
>gi|255037376|ref|YP_003087997.1| endonuclease III [Dyadobacter fermentans DSM 18053]
gi|254950132|gb|ACT94832.1| endonuclease III [Dyadobacter fermentans DSM 18053]
Length = 220
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 22/112 (19%)
Query: 506 GLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQ---PLPESLQLHLLELYPVLE 562
G+G K+ + + A VDT+V R++ RLG VP+ PL +L +
Sbjct: 117 GVGRKTANVIASVIFSMPAMAVDTHVFRVSRRLGLVPMTAKTPLAVEREL--------VT 168
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
I K+L +++ H+ +I G+ CT P C CP+ CR+F
Sbjct: 169 HIPKHL-----------IHKAHHWLILHGRYVCTARNPQCFQCPLSPFCRYF 209
>gi|157964887|ref|YP_001499711.1| endonuclease III [Rickettsia massiliae MTU5]
gi|157844663|gb|ABV85164.1| Endonuclease III [Rickettsia massiliae MTU5]
Length = 210
Score = 49.3 bits (116), Expect = 0.011, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 19/121 (15%)
Query: 494 PDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 553
P+ KE L+ G+G K+ V VDT+V R+A R+G + PE ++
Sbjct: 105 PNDFKE-LIKLPGVGRKTANVVLNCLFGMPTMAVDTHVFRVAKRIG-LAKGGTPEIVEKE 162
Query: 554 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
LL++ +D++ L H+ +I G+ C KP+C+ CP++ C +
Sbjct: 163 LLQI-----------------IDKKWLTHAHHWLILHGRYICKARKPDCDICPIKEYCDY 205
Query: 614 F 614
+
Sbjct: 206 Y 206
>gi|395792597|ref|ZP_10472021.1| endonuclease III [Bartonella vinsonii subsp. arupensis Pm136co]
gi|395432154|gb|EJF98143.1| endonuclease III [Bartonella vinsonii subsp. arupensis Pm136co]
Length = 246
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 66/161 (40%), Gaps = 27/161 (16%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
+IA I+ G+ A + N L+ +G PDK +E L+S G+G K+
Sbjct: 89 EIARHIRTIGLWRAKARNVYALCNFLIDQYGGK--------VPDK-REDLMSLPGVGRKT 139
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
V + H VDT++ R+ RLG P + PE ++ LL++ PV
Sbjct: 140 ANVVLNVAFGHPTLAVDTHILRLGNRLGLAPGKT-PEIVEEKLLKIIPV----------- 187
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
L H+ +I G+ C K C C + C+
Sbjct: 188 ------HYLRHAHHWLILHGRYICQARKTQCTRCIIADLCK 222
>gi|386729151|ref|YP_006195534.1| endonuclease III [Staphylococcus aureus subsp. aureus 71193]
gi|418978105|ref|ZP_13525906.1| Endonuclease III [Staphylococcus aureus subsp. aureus DR10]
gi|379993721|gb|EIA15166.1| Endonuclease III [Staphylococcus aureus subsp. aureus DR10]
gi|384230444|gb|AFH69691.1| Endonuclease III [Staphylococcus aureus subsp. aureus 71193]
Length = 220
Score = 49.3 bits (116), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 70/170 (41%), Gaps = 28/170 (16%)
Query: 453 IANTIKERGMNNMLAGRIKDFLNRLV-RDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
+ N I+ G+ A IK L+ + +G + P KE L S G+G K+
Sbjct: 74 LMNDIRSIGLYRNKAKNIKKLCQSLIDQFNGEI---------PQTHKE-LESLAGVGRKT 123
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
V + + VDT+V R++ RLG + ++ L + P + W R
Sbjct: 124 ANVVMSVAFDEPSLAVDTHVERVSKRLGINRWKDNVRQVEDRLCSVIP------RDRWNR 177
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASS 621
H+Q+I FG+ C KP C+ CP+ +CR + +S
Sbjct: 178 -----------SHHQLIFFGRYHCLARKPKCDICPLLEDCREGQKRYKAS 216
>gi|418630605|ref|ZP_13193086.1| endonuclease III [Staphylococcus epidermidis VCU128]
gi|374837795|gb|EHS01358.1| endonuclease III [Staphylococcus epidermidis VCU128]
Length = 219
Score = 49.3 bits (116), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 65/160 (40%), Gaps = 26/160 (16%)
Query: 453 IANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSV 512
+ N I+ G+ A IK + L+ E P KE L S G+G K+
Sbjct: 73 LQNDIRSIGLYRNKAKNIKKLCHSLI--------EQFNGQIPQTHKE-LESLAGVGRKTA 123
Query: 513 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRL 572
V + + VDT+V R++ RLG + ++ L ++ P + W +
Sbjct: 124 NVVMSVAFGEPSLAVDTHVERVSKRLGINRWKDNVRQVEDRLCDIIP------RDRWNK- 176
Query: 573 CKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
H+Q+I FG+ C KP C CP+ +CR
Sbjct: 177 ----------SHHQLIFFGRYHCLARKPKCEICPLLNDCR 206
>gi|242242733|ref|ZP_04797178.1| DNA-(apurinic or apyrimidinic site) lyase [Staphylococcus
epidermidis W23144]
gi|418327918|ref|ZP_12939050.1| endonuclease III [Staphylococcus epidermidis 14.1.R1.SE]
gi|418614689|ref|ZP_13177651.1| endonuclease III [Staphylococcus epidermidis VCU118]
gi|420174776|ref|ZP_14681224.1| endonuclease III [Staphylococcus epidermidis NIHLM061]
gi|420178159|ref|ZP_14684492.1| endonuclease III [Staphylococcus epidermidis NIHLM057]
gi|420179821|ref|ZP_14686098.1| endonuclease III [Staphylococcus epidermidis NIHLM053]
gi|420192210|ref|ZP_14698070.1| endonuclease III [Staphylococcus epidermidis NIHLM023]
gi|242233869|gb|EES36181.1| DNA-(apurinic or apyrimidinic site) lyase [Staphylococcus
epidermidis W23144]
gi|365232477|gb|EHM73473.1| endonuclease III [Staphylococcus epidermidis 14.1.R1.SE]
gi|374819225|gb|EHR83353.1| endonuclease III [Staphylococcus epidermidis VCU118]
gi|394244680|gb|EJD90015.1| endonuclease III [Staphylococcus epidermidis NIHLM061]
gi|394246785|gb|EJD92037.1| endonuclease III [Staphylococcus epidermidis NIHLM057]
gi|394252416|gb|EJD97451.1| endonuclease III [Staphylococcus epidermidis NIHLM053]
gi|394261421|gb|EJE06218.1| endonuclease III [Staphylococcus epidermidis NIHLM023]
Length = 219
Score = 49.3 bits (116), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 65/160 (40%), Gaps = 26/160 (16%)
Query: 453 IANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSV 512
+ N I+ G+ A IK + L+ E P KE L S G+G K+
Sbjct: 73 LQNDIRSIGLYRNKAKNIKKLCHSLI--------EQFNGQIPQTHKE-LESLAGVGRKTA 123
Query: 513 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRL 572
V + + VDT+V R++ RLG + ++ L ++ P + W +
Sbjct: 124 NVVMSVAFGEPSLAVDTHVERVSKRLGINRWKDNVRQVEDRLCDIIP------RDRWNK- 176
Query: 573 CKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
H+Q+I FG+ C KP C CP+ +CR
Sbjct: 177 ----------SHHQLIFFGRYHCLARKPKCEICPLLNDCR 206
>gi|319781489|ref|YP_004140965.1| endonuclease III [Mesorhizobium ciceri biovar biserrulae WSM1271]
gi|317167377|gb|ADV10915.1| endonuclease III [Mesorhizobium ciceri biovar biserrulae WSM1271]
Length = 274
Score = 48.9 bits (115), Expect = 0.012, Method: Composition-based stats.
Identities = 39/161 (24%), Positives = 67/161 (41%), Gaps = 27/161 (16%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
++ I+ G+ A + L+RDHG +VP ++ + L+ G+G K+
Sbjct: 109 RVGEYIRTIGLWRNKAKNVIALSQALIRDHGG-------EVPDNR--DELVKLPGVGRKT 159
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
V + VDT++ RI RLG P + PE ++ LL++ P
Sbjct: 160 ANVVLNMAFGQHTMAVDTHILRIGNRLGLAPGKT-PEQVEQGLLKIIP------------ 206
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
+ H+ +I G+ C KP+C AC + C+
Sbjct: 207 -----DEYMRHAHHWLILHGRYVCKARKPDCPACVIADICK 242
>gi|146295729|ref|YP_001179500.1| HhH-GPD family protein [Caldicellulosiruptor saccharolyticus DSM
8903]
gi|145409305|gb|ABP66309.1| HhH-GPD family protein [Caldicellulosiruptor saccharolyticus DSM
8903]
Length = 224
Score = 48.9 bits (115), Expect = 0.012, Method: Composition-based stats.
Identities = 42/162 (25%), Positives = 68/162 (41%), Gaps = 21/162 (12%)
Query: 453 IANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSV 512
+A I+ G N A R+KDF + L + S DL+ L + + +E LLS +G+G ++
Sbjct: 75 LAQLIRPTGYYNQKAKRLKDFCSFLKNEFNS-DLQKLFSLEISELREKLLSQKGIGYETA 133
Query: 513 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLP-ESLQLHLLELYPVLESIQKYLWPR 571
+ + L F VD R+ RLG + + + LQ ++E
Sbjct: 134 DSIILYGAEKPIFVVDAYTKRLFFRLGLIESEKIDYNQLQSTIME--------------- 178
Query: 572 LCKLDQRT--LYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
L+ +T E H ++ K C KP C C + C
Sbjct: 179 --NLEHKTSLFNEFHALIVKHCKEICKNKKPECKKCCLHKMC 218
>gi|310824392|ref|YP_003956750.1| base excision DNA repair protein [Stigmatella aurantiaca DW4/3-1]
gi|309397464|gb|ADO74923.1| Base excision DNA repair protein, HhH-GPD family [Stigmatella
aurantiaca DW4/3-1]
Length = 226
Score = 48.9 bits (115), Expect = 0.012, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 20/122 (16%)
Query: 492 VPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQ 551
+P D E L SFRG+G K + H A VD +V R+ R G+V + ++L+
Sbjct: 118 LPADA--EVLQSFRGVGPKCAHLALGVACGHEAISVDIHVHRVTNRWGYVRTRSPEQTLK 175
Query: 552 LHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
LE+ +L + E++ ++ FGK CT S+P C+ CP+ C
Sbjct: 176 --------ALEA----------RLPRAYWIEINRLLVPFGKHVCTGSRPQCSRCPVLAMC 217
Query: 612 RH 613
+
Sbjct: 218 QQ 219
>gi|384550214|ref|YP_005739466.1| DNA-(apurinic or apyrimidinic site) lyase [Staphylococcus aureus
subsp. aureus JKD6159]
gi|302333063|gb|ADL23256.1| DNA-(apurinic or apyrimidinic site) lyase [Staphylococcus aureus
subsp. aureus JKD6159]
Length = 219
Score = 48.9 bits (115), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 70/170 (41%), Gaps = 28/170 (16%)
Query: 453 IANTIKERGMNNMLAGRIKDFLNRLV-RDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKS 511
+ N I+ G+ A IK L+ + +G + P KE L S G+G K+
Sbjct: 73 LMNDIRSIGLYRNKAKNIKKLCQSLIDQFNGEI---------PQTHKE-LESLAGVGRKT 122
Query: 512 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPR 571
V + + VDT+V R++ RLG + ++ L + P + W R
Sbjct: 123 ANVVMSVAFDEPSLAVDTHVERVSKRLGINRWKDNVRQVEDRLCSVIP------RDRWNR 176
Query: 572 LCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASS 621
H+Q+I FG+ C KP C+ CP+ +CR + +S
Sbjct: 177 -----------SHHQLIFFGRYHCLARKPKCDICPLLEDCREGQKRYKAS 215
>gi|227499736|ref|ZP_03929836.1| DNA-(apurinic or apyrimidinic site) lyase [Anaerococcus tetradius
ATCC 35098]
gi|227218203|gb|EEI83466.1| DNA-(apurinic or apyrimidinic site) lyase [Anaerococcus tetradius
ATCC 35098]
Length = 203
Score = 48.9 bits (115), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 69/167 (41%), Gaps = 27/167 (16%)
Query: 448 ADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGL 507
AD+ I N IK G+ A I L +D+ S VP D KE L+ G+
Sbjct: 59 ADIKTIENYIKTVGIYKNKAKNISATSKILYKDYNS-------KVPKD-IKE-LMKLPGV 109
Query: 508 GLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKY 567
G K+ V + A VDT+V R++ RLG + ++ + ++ +I K
Sbjct: 110 GRKTANVVASNAFNIPAIAVDTHVFRVSNRLGLACANNVEKTEE-------QLMANIDKN 162
Query: 568 LWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
W + H+Q+IT G+ C P C C + C ++
Sbjct: 163 RWRKT-----------HHQLITHGRALCKARNPLCEECDLNVLCEYY 198
>gi|117919630|ref|YP_868822.1| A/G-specific DNA-adenine glycosylase [Shewanella sp. ANA-3]
gi|117611962|gb|ABK47416.1| A/G-specific DNA-adenine glycosylase [Shewanella sp. ANA-3]
Length = 372
Score = 48.9 bits (115), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 30/143 (20%)
Query: 499 EYLLSFRGLGLKSVECVRLLTL--HHLAFPV-DTNVGRIAVR----LGWVPLQPLPESLQ 551
E +L+ G+G + V L+L HH P+ D NV R+ R GW +P+ E L
Sbjct: 110 EQVLALPGIGRSTAGAVLSLSLGQHH---PILDGNVKRVLARHGAIAGWPGQKPVEEQLW 166
Query: 552 LHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
+L P + IQKY + M+ G CT+SKPNC ACP+ +C
Sbjct: 167 QLTEQLTPE-QDIQKY----------------NQAMMDIGASICTRSKPNCAACPVAIDC 209
Query: 612 RHFASAFASSRLALPGPEEKAIV 634
+ + + PG + K +
Sbjct: 210 K---AQLMGRQTEFPGKKPKKTI 229
>gi|255528039|ref|ZP_05394875.1| endonuclease III [Clostridium carboxidivorans P7]
gi|296185709|ref|ZP_06854118.1| endonuclease III [Clostridium carboxidivorans P7]
gi|255508278|gb|EET84682.1| endonuclease III [Clostridium carboxidivorans P7]
gi|296049837|gb|EFG89262.1| endonuclease III [Clostridium carboxidivorans P7]
Length = 212
Score = 48.9 bits (115), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 19/128 (14%)
Query: 494 PDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 553
PD +E LL G+G K+ V A VDT+V R++ RLG + PE ++
Sbjct: 104 PDTMEE-LLKLPGVGRKTANVVLSNAFGVPAIAVDTHVFRVSNRLG-IAKGDTPEQVEKG 161
Query: 554 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
L++ P + +W + H+ +I G++ C KP+C CP+ C +
Sbjct: 162 LMKNVP------RDMWS-----------DTHHYLIWHGRLICKSRKPDCEKCPLAPYCEY 204
Query: 614 FASAFASS 621
F+ S+
Sbjct: 205 FSGGDTSA 212
>gi|386772508|ref|ZP_10094886.1| endonuclease III [Brachybacterium paraconglomeratum LC44]
Length = 231
Score = 48.9 bits (115), Expect = 0.013, Method: Composition-based stats.
Identities = 42/159 (26%), Positives = 62/159 (38%), Gaps = 20/159 (12%)
Query: 453 IANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSV 512
+ ++ GM A RI L+ DH +VP D+A L G+G K+
Sbjct: 86 VTEQVRPLGMGATRARRIIGLSRALLVDHDG-------EVPDDQAA--LERLPGVGRKTA 136
Query: 513 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRL 572
VR H VDT+VGR++ RLGW P +++ E + +
Sbjct: 137 HVVRGAWFGHSLLAVDTHVGRLSRRLGWTTATD-PRAVE----------EDVVARVEADG 185
Query: 573 CKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
D L L ++I G+ CT P C C + C
Sbjct: 186 TGADAEDLTMLGLRLILHGRRVCTARAPRCGECVLADLC 224
>gi|338732107|ref|YP_004670580.1| putative endonuclease III [Simkania negevensis Z]
gi|336481490|emb|CCB88089.1| putative endonuclease III [Simkania negevensis Z]
Length = 204
Score = 48.9 bits (115), Expect = 0.013, Method: Composition-based stats.
Identities = 46/165 (27%), Positives = 69/165 (41%), Gaps = 27/165 (16%)
Query: 443 EAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLL 502
+A+ V I IK G++ A IK L+ D+GS VP K E L
Sbjct: 63 KAMAALPVQTIQAIIKPCGLSPTKAKNIKKLSEILLEDYGS-------QVP--KELEELE 113
Query: 503 SFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLE 562
G+G K+ V AFPVDT++ R A R G + + ++ E
Sbjct: 114 KLPGVGHKTASVVVAQAFKQPAFPVDTHIHRCAKRWGLSSGKNVKQT------------E 161
Query: 563 SIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPM 607
K L+P+ ++ +LH Q+I FG+ FC + CP+
Sbjct: 162 KDLKALFPK------KSWRKLHLQIIYFGRAFCMARAHKVSECPI 200
>gi|345303642|ref|YP_004825544.1| endonuclease III [Rhodothermus marinus SG0.5JP17-172]
gi|345112875|gb|AEN73707.1| endonuclease III [Rhodothermus marinus SG0.5JP17-172]
Length = 280
Score = 48.9 bits (115), Expect = 0.013, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 58/138 (42%), Gaps = 25/138 (18%)
Query: 494 PDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 553
PD + E L S G+G K+ V + A PVDT+V R+A R+G V P ++
Sbjct: 106 PD-SLEALESLPGVGPKTARVVASVAFGVAALPVDTHVYRVAHRIGLVRRARTPLEVERR 164
Query: 554 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
L P R E H+ +I G+ CT +P+C+ C + C H
Sbjct: 165 LKRQLPA-----------------RDWGEAHHLLILHGRYTCTARQPHCDRCVLTDLCDH 207
Query: 614 FASAFASSRL-ALPGPEE 630
+ RL LP P E
Sbjct: 208 Y------RRLRRLPAPLE 219
>gi|338532530|ref|YP_004665864.1| base excision DNA repair protein [Myxococcus fulvus HW-1]
gi|337258626|gb|AEI64786.1| base excision DNA repair protein [Myxococcus fulvus HW-1]
Length = 211
Score = 48.9 bits (115), Expect = 0.013, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 18/115 (15%)
Query: 499 EYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY 558
+ L SF+G+G K + H A VD +V R+ R G+V + PE+
Sbjct: 108 QVLQSFKGVGPKCAHLALGIACGHEAISVDIHVHRVTNRWGYVRART-PEA--------- 157
Query: 559 PVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
LE+++ L PR EL+ ++ FGK CT ++P C+ CP+ CR
Sbjct: 158 -TLEALEAVL-PR------AYWVELNRLLVPFGKHVCTGTRPRCSTCPVLRFCRQ 204
>gi|315053601|ref|XP_003176175.1| hypothetical protein MGYG_00265 [Arthroderma gypseum CBS 118893]
gi|311338021|gb|EFQ97223.1| hypothetical protein MGYG_00265 [Arthroderma gypseum CBS 118893]
Length = 712
Score = 48.9 bits (115), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 74/209 (35%), Gaps = 62/209 (29%)
Query: 437 KDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFL------NRLVRDH--------- 481
K S++W VR A V I +K G+ + IK L NR RD
Sbjct: 236 KGSVNWNKVREAPVEDIYEAMKCGGLGVAKSKYIKQILEMVYTENRTRRDALVESKSGKH 295
Query: 482 -------GSV-------------------DLEWLRDVPPDKAKEYLLSFRGLGLKSVECV 515
GSV L L + D+A + + G+G+K+ CV
Sbjct: 296 LDLTQAPGSVKKTEEQKDNEIAMADENVLSLNHLHSLSKDEAMLEFVKYPGIGVKTAACV 355
Query: 516 RLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKL 575
L L F VDT+V R++ LGW+P + E LE+ ++
Sbjct: 356 VLFCLQRPCFAVDTHVFRLSKWLGWIPSDKVNEITAFSHLEV----------------RI 399
Query: 576 DQRTLYELHYQMITFGKVFCTKSKPNCNA 604
Y LH I GK C P C A
Sbjct: 400 PDNLKYSLHQLFIHHGKA-C----PRCRA 423
>gi|15614261|ref|NP_242564.1| endonuclease III [Bacillus halodurans C-125]
gi|10174315|dbj|BAB05417.1| endonuclease III (DNA repair) [Bacillus halodurans C-125]
Length = 218
Score = 48.9 bits (115), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 26/156 (16%)
Query: 457 IKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVR 516
I+ G+ A IK L+ +G +VP D+ + L+ G+G K+ V
Sbjct: 77 IRSIGLYRNKAKNIKKLCQSLLEQYGG-------EVPQDR--DELVKLAGVGRKTANVVA 127
Query: 517 LLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLD 576
+ A VDT+V R++ RLG + ++ L++ P +D
Sbjct: 128 SVAFGVPAIAVDTHVERVSKRLGICRWKDNVTQVEQTLMKKIP---------------MD 172
Query: 577 QRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
+ ++ H+++I FG+ C P C+ CP+ CR
Sbjct: 173 EWSIS--HHRLIFFGRYHCKAQNPQCDICPLLDMCR 206
>gi|358059307|ref|ZP_09147609.1| endonuclease III [Staphylococcus simiae CCM 7213]
gi|357256611|gb|EHJ06963.1| endonuclease III [Staphylococcus simiae CCM 7213]
Length = 219
Score = 48.9 bits (115), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 17/121 (14%)
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
L S G+G K+ V + + VDT+V R++ RLG + ++ L + P
Sbjct: 112 LESLAGVGRKTANVVMSVAFGEPSLAVDTHVERVSKRLGINRWKDNVRQVEDRLCSIIP- 170
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFAS 620
K W + H+Q+I FG+ C KP C+ CP+ +CR + +
Sbjct: 171 -----KDRWTKS-----------HHQLIFFGRYHCLARKPKCDICPLLDDCREGQKRYKA 214
Query: 621 S 621
S
Sbjct: 215 S 215
>gi|423334271|ref|ZP_17312051.1| endonuclease III [Lactobacillus reuteri ATCC 53608]
gi|337728079|emb|CCC03169.1| endonuclease III [Lactobacillus reuteri ATCC 53608]
Length = 213
Score = 48.9 bits (115), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 54/118 (45%), Gaps = 18/118 (15%)
Query: 494 PDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 553
P KE L++ G+G K + V + AFPVDT+V R+A RL V +P L +
Sbjct: 106 PHTLKE-LMTLSGVGRKVADVVLAECFNIPAFPVDTHVSRVARRLRMV--EPKASVLAIE 162
Query: 554 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
++++I W LD H+ MI +G+ CT P C CP+ C
Sbjct: 163 ----KKLMKTIPPEHW-----LDA------HHSMIFWGRYVCTARNPKCQTCPLLSLC 205
>gi|327311608|ref|YP_004338505.1| iron-sulfur cluster loop containing protein [Thermoproteus
uzoniensis 768-20]
gi|326948087|gb|AEA13193.1| iron-sulfur cluster loop containing protein [Thermoproteus
uzoniensis 768-20]
Length = 294
Score = 48.9 bits (115), Expect = 0.013, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 526 PVDTNVGRIAVRLGW--VPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYEL 583
PVD ++ RIA RLG V + L E L+L E V + + K W + K + L
Sbjct: 188 PVDNHLSRIAYRLGIADVDYRQLFEGLELSREEDAEVRQKV-KLAWRLVAKFSGVDPFTL 246
Query: 584 HYQMITFGKVFCTKSKPNCNACPMRGECR 612
+ +FG+ CT+ P C CP R C+
Sbjct: 247 DDFLWSFGRRVCTREAPKCGQCPFRSVCK 275
>gi|295099302|emb|CBK88391.1| Predicted EndoIII-related endonuclease [Eubacterium cylindroides
T2-87]
Length = 106
Score = 48.9 bits (115), Expect = 0.013, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 17/111 (15%)
Query: 502 LSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 561
+S G+G K+ VR + +F VDT+V RI+ RLG L + Y +
Sbjct: 1 MSLAGVGRKTANVVRSVAFDIPSFAVDTHVDRISKRLG--------------LAKPYDSV 46
Query: 562 ESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
E +++ L K+D+ H++ I FG+ C P C CP C+
Sbjct: 47 EKVEEKLKR---KIDRDRWNRGHHEFIFFGRYLCHSRNPECYRCPFIDICK 94
>gi|336364947|gb|EGN93300.1| hypothetical protein SERLA73DRAFT_189864 [Serpula lacrymans var.
lacrymans S7.3]
gi|336377515|gb|EGO18677.1| hypothetical protein SERLADRAFT_481001 [Serpula lacrymans var.
lacrymans S7.9]
Length = 439
Score = 48.9 bits (115), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 12/97 (12%)
Query: 452 KIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDL-------EWL---RDVPPDKAKEYL 501
++ T++ G A I+ LV HG L EWL RD+ D+A+E L
Sbjct: 204 EVVGTLRSLGFGYR-ASFIQRTAKMLVDTHGHTSLSSLEASEEWLMTLRDLTTDEAREEL 262
Query: 502 LSFRGLGLKSVECVRLLTLHHL-AFPVDTNVGRIAVR 537
L F G+G K +CV L+++ PVDT+V +IA++
Sbjct: 263 LKFMGVGRKVADCVLLMSMDKKDVIPVDTHVHQIAIK 299
>gi|406861525|gb|EKD14579.1| base excision DNA repair protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 607
Score = 48.9 bits (115), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 484 VDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPL 543
+ + ++ + + A E L+ + G+G+K+ CV L L +F VDT+V R LGWVP
Sbjct: 312 LTMHYVFQMTDEDAMEELIQYYGVGVKTASCVMLFCLQRNSFAVDTHVHRFCRWLGWVPF 371
Query: 544 Q 544
+
Sbjct: 372 R 372
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.314 0.130 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,990,395,993
Number of Sequences: 23463169
Number of extensions: 632243626
Number of successful extensions: 1543591
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 4071
Number of HSP's that attempted gapping in prelim test: 1515262
Number of HSP's gapped (non-prelim): 13973
length of query: 960
length of database: 8,064,228,071
effective HSP length: 153
effective length of query: 807
effective length of database: 8,769,330,510
effective search space: 7076849721570
effective search space used: 7076849721570
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 82 (36.2 bits)