BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002141
(960 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LK56|DME_ARATH Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME PE=1
SV=2
Length = 1987
Score = 857 bits (2214), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 475/959 (49%), Positives = 614/959 (64%), Gaps = 49/959 (5%)
Query: 20 SSAFMSLAANFPLNSKQKPCHGEEITSVI-EEPAEYVLDPEDTIEWKEKMSHQPVCDQGS 78
SSAFMSLAA FP + SV+ E+P +L+ + W+EK+ H
Sbjct: 1043 SSAFMSLAARFPPKLSSSREDERNVRSVVVEDPEGCILNLNEIPSWQEKVQHP-----SD 1097
Query: 79 MTLHGSESSEEREVVSSNNSLESSTSVVSSINESKCKLMNSSEIYPETYNDVLSSPNSLD 138
M + G +S + ++ +NS + N + + N E +VLSS +S D
Sbjct: 1098 MEVSGVDSGSKEQLRDCSNS------GIERFNFLEKSIQNLEE-------EVLSSQDSFD 1144
Query: 139 SSFAPFADGTISSSNSNSDAGDSSNVPTLNSFNGSNSFVELL--QMVGSTMLHGNYNHRN 196
+ S S S SDA + + +G++ V+ + L GN
Sbjct: 1145 PAIFQSCGRVGSCSCSKSDAEFPTTRCETKTVSGTSQSVQTGSPNLSDEICLQGNERPHL 1204
Query: 197 GHMSSDENSKDEHSQFQTLESNTQRVKVKD---IDDPKVLSRVSSIPPSSFHPCLTQDLS 253
S D ++ + Q + + KD P+ + + P SS+ C T+
Sbjct: 1205 YEGSGDVQKQETTNVAQKKPDLEKTMNWKDSVCFGQPRNDTNWQTTPSSSYEQCATRQPH 1264
Query: 254 V-EVESYEMRREETRSS--GISDVTDKIAL--MPEFASQTTDATKLIVAGPEAPRHGNKQ 308
V ++E + M+ E S IS D++ +P + + G P ++
Sbjct: 1265 VLDIEDFGMQGEGLGYSWMSISPRVDRVKNKNVPRRFFRQGGSVPREFTGQIIPSTPHEL 1324
Query: 309 SRNSMQANKNSIAQHESELFGDSRFAMEPPAHAQKNDLNLPKISSGSIDAIESH-----N 363
+ + +++ +H+ + + + M +H QK L+L S + S +
Sbjct: 1325 PGMGLSGSSSAVQEHQDDTQHNQQDEMNKASHLQKTFLDLLNSSEECLTRQSSTKQNITD 1384
Query: 364 ALYNRENTQ------LKSSVSDQNKY--DHSFSKELNGIDDATSKSKSTR-----VSKEK 410
R+ T L ++ S QN +S +KE ++ + + R ++ K
Sbjct: 1385 GCLPRDRTAEDVVDPLSNNSSLQNILVESNSSNKEQTAVEYKETNATILREMKGTLADGK 1444
Query: 411 QNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRI 470
+ WDSLR+ VE N G++ER ++ DS+D+EA+R A +++I+ IKERGMNNMLA RI
Sbjct: 1445 KPTSQWDSLRKDVEGNEGRQERNKNNMDSIDYEAIRRASISEISEAIKERGMNNMLAVRI 1504
Query: 471 KDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTN 530
KDFL R+V+DHG +DLEWLR+ PPDKAK+YLLS RGLGLKSVECVRLLTLH+LAFPVDTN
Sbjct: 1505 KDFLERIVKDHGGIDLEWLRESPPDKAKDYLLSIRGLGLKSVECVRLLTLHNLAFPVDTN 1564
Query: 531 VGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITF 590
VGRIAVR+GWVPLQPLPESLQLHLLELYPVLESIQK+LWPRLCKLDQRTLYELHYQ+ITF
Sbjct: 1565 VGRIAVRMGWVPLQPLPESLQLHLLELYPVLESIQKFLWPRLCKLDQRTLYELHYQLITF 1624
Query: 591 GKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANENRTNTQNPAMMI 650
GKVFCTKS+PNCNACPMRGECRHFASA+AS+RLALP PEE+++ SA P + I
Sbjct: 1625 GKVFCTKSRPNCNACPMRGECRHFASAYASARLALPAPEERSLTSATIPVPPESYPPVAI 1684
Query: 651 NQLPLPLTHATDLPVGKLEIAVNNCEPIIEEPATPEPERVQVSENDIEDTFC-EDPEEIP 709
+ LPL L G NCEPIIEEPA+P E +++E+DIED + EDP+EIP
Sbjct: 1685 PMIELPLPLEKSLASGAPS-NRENCEPIIEEPASPGQECTEITESDIEDAYYNEDPDEIP 1743
Query: 710 TIKLNMKEFTQTLQNYMQENLELQEGDMSKALVALTAGAASIPAPKLKNVSRLRTEHQVY 769
TIKLN+++F TL+ +M+ N+ELQEGDMSKALVAL SIP PKLKN+SRLRTEHQVY
Sbjct: 1744 TIKLNIEQFGMTLREHMERNMELQEGDMSKALVALHPTTTSIPTPKLKNISRLRTEHQVY 1803
Query: 770 ELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQEHGKMCDEKTCFS 829
ELPDSH LL GM+KREPDDP YLLAIWTPGETANS QPPE +C + GKMC ++TC
Sbjct: 1804 ELPDSHRLLDGMDKREPDDPSPYLLAIWTPGETANSAQPPEQKCGGKASGKMCFDETCSE 1863
Query: 830 CNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWN 889
CNS+RE+ Q VRGT+LIPCRTAMRGSFPLNGTYFQVNE+FADH+SSLKPI+VPR+W+W+
Sbjct: 1864 CNSLREANSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNELFADHESSLKPIDVPRDWIWD 1923
Query: 890 LPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMARLHFPASKL 948
LPRRTVYFGTS+ SIF+GL+TE IQ CFW+G+VCVRGF+QK+RAPRPLMARLHFPASKL
Sbjct: 1924 LPRRTVYFGTSVTSIFRGLSTEQIQFCFWKGFVCVRGFEQKTRAPRPLMARLHFPASKL 1982
>sp|Q9SJQ6|ROS1_ARATH Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 SV=2
Length = 1393
Score = 842 bits (2175), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/554 (71%), Positives = 452/554 (81%), Gaps = 12/554 (2%)
Query: 398 TSKSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTI 457
T K K +V KE++ FDWD LRR+ +A G +E+ T D++DW+A+R ADV ++A TI
Sbjct: 841 TLKEKGKKVLKEEKKAFDWDCLRREAQARAGIREKTRSTMDTVDWKAIRAADVKEVAETI 900
Query: 458 KERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRL 517
K RGMN+ LA RI+ FL+RLV DHGS+DLEWLRDVPPDKAKEYLLSF GLGLKSVECVRL
Sbjct: 901 KSRGMNHKLAERIQGFLDRLVNDHGSIDLEWLRDVPPDKAKEYLLSFNGLGLKSVECVRL 960
Query: 518 LTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQ 577
LTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLE+YP+LESIQKYLWPRLCKLDQ
Sbjct: 961 LTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEMYPMLESIQKYLWPRLCKLDQ 1020
Query: 578 RTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSAN 637
+TLYELHYQMITFGKVFCTKSKPNCNACPM+GECRHFASAFAS+RLALP E+
Sbjct: 1021 KTLYELHYQMITFGKVFCTKSKPNCNACPMKGECRHFASAFASARLALPSTEKGM----- 1075
Query: 638 ENRTNTQNPAMMINQLPLPLTHATDLPV---GKLEIAVNNCEPIIEEPATPEPERVQVSE 694
T +NP + LP P V + V CEPIIEEPA+PEPE +VS
Sbjct: 1076 --GTPDKNPLPL--HLPEPFQREQGSEVVQHSEPAKKVTCCEPIIEEPASPEPETAEVSI 1131
Query: 695 NDIEDTFCEDPEEIPTIKLNMKEFTQTLQNYMQENLELQEGDMSKALVALTAGAASIPAP 754
DIE+ F EDPEEIPTI+LNM FT L+ M+ N ELQ+G+MS ALVALTA AS+P P
Sbjct: 1132 ADIEEAFFEDPEEIPTIRLNMDAFTSNLKKIMEHNKELQDGNMSSALVALTAETASLPMP 1191
Query: 755 KLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCS 814
KLKN+S+LRTEH+VYELPD HPLL +EKREPDDP YLLAIWTPGETA+SIQP S C
Sbjct: 1192 KLKNISQLRTEHRVYELPDEHPLLAQLEKREPDDPCSYLLAIWTPGETADSIQPSVSTCI 1251
Query: 815 SQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHD 874
Q +G +CDE+TCFSCNS++E+ QIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADH
Sbjct: 1252 FQANGMLCDEETCFSCNSIKETRSQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHA 1311
Query: 875 SSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAP 934
SSL PINVPRE +W LPRRTVYFGTS+P+IFKGL+TE IQ CFW+GYVCVRGFD+K+R P
Sbjct: 1312 SSLNPINVPRELIWELPRRTVYFGTSVPTIFKGLSTEKIQACFWKGYVCVRGFDRKTRGP 1371
Query: 935 RPLMARLHFPASKL 948
+PL+ARLHFPASKL
Sbjct: 1372 KPLIARLHFPASKL 1385
Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Query: 20 SSAFMSLAANFPLNSKQKPCHGEEITSVIEEPAEYVLDPEDTIEWKEKMSHQPVCDQGSM 79
SSAFMSLA+ FP+ +S+ Y LD E+T MS P + S+
Sbjct: 615 SSAFMSLASQFPVPFVPSSNFDAGTSSMPSIQITY-LDSEET------MSSPPDHNHSSV 667
Query: 80 TLHGSESSEEREVVSSNNSLESSTSVVSSINESKCKLMNSSE 121
TL ++ EE++ V SN + SS+ + S +ES K +S E
Sbjct: 668 TLKNTQPDEEKDYVPSNETSRSSSEIAISAHESVDKTTDSKE 709
>sp|Q9SR66|DML2_ARATH DEMETER-like protein 2 OS=Arabidopsis thaliana GN=DML2 PE=3 SV=2
Length = 1332
Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/547 (61%), Positives = 402/547 (73%), Gaps = 27/547 (4%)
Query: 410 KQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGR 469
++ DWDSLR++ E+ G K+ER E T D++DW+A+RC DV+KIAN I +RGMNNMLA R
Sbjct: 785 QKKSVDWDSLRKEAESGGRKRERTERTMDTVDWDALRCTDVHKIANIIIKRGMNNMLAER 844
Query: 470 IKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDT 529
IK FLNRLV+ HGS+DLEWLRDVPPDKAKEYLLS GLGLKSVECVRLL+LH +AFPVDT
Sbjct: 845 IKAFLNRLVKKHGSIDLEWLRDVPPDKAKEYLLSINGLGLKSVECVRLLSLHQIAFPVDT 904
Query: 530 NVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMIT 589
NVGRIAVRLGWVPLQPLP+ LQ+HLLELYPVLES+QKYLWPRLCKLDQ+TLYELHY MIT
Sbjct: 905 NVGRIAVRLGWVPLQPLPDELQMHLLELYPVLESVQKYLWPRLCKLDQKTLYELHYHMIT 964
Query: 590 FGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSANENRTNTQNPAMM 649
FGKVFCTK KPNCNACPM+ ECRH++SA AS+RLALP PEE S + ++ ++
Sbjct: 965 FGKVFCTKVKPNCNACPMKAECRHYSSARASARLALPEPEESDRTSVMIHERRSKRKPVV 1024
Query: 650 INQLP-LPLTHATDLPVGKLEIAVNNCEPIIEEPATPEPERVQVSENDIED--------T 700
+N P L L + + + NCEPIIEEPA+PEPE + E+DIED
Sbjct: 1025 VNFRPSLFLYQEKEQEAQRSQ----NCEPIIEEPASPEPEYI---EHDIEDYPRDKNNVG 1077
Query: 701 FCEDPEE----IPTIKLNMKEFTQTLQNYMQENLELQEGDMSKALVALTAGAASIPAPKL 756
EDP E IPTI LN + T + + +E S LV L+ AA+IP KL
Sbjct: 1078 TSEDPWENKDVIPTIILNKEAGTS------HDLVVNKEAGTSHDLVVLSTYAAAIPRRKL 1131
Query: 757 KNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQ 816
K +LRTEH V+ELPD H +L G E+RE +D YLLAIWTPGET NSIQPP+ RC+
Sbjct: 1132 KIKEKLRTEHHVFELPDHHSILEGFERREAEDIVPYLLAIWTPGETVNSIQPPKQRCALF 1191
Query: 817 E-HGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDS 875
E + +C+E CF CN RE E Q VRGTILIPCRTAMRG FPLNGTYFQ NEVFADHDS
Sbjct: 1192 ESNNTLCNENKCFQCNKTREEESQTVRGTILIPCRTAMRGGFPLNGTYFQTNEVFADHDS 1251
Query: 876 SLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPR 935
S+ PI+VP E +W+L RR Y G+S+ SI KGL+ E I++ F GYVCVRGFD+++R P+
Sbjct: 1252 SINPIDVPTELIWDLKRRVAYLGSSVSSICKGLSVEAIKYNFQEGYVCVRGFDRENRKPK 1311
Query: 936 PLMARLH 942
L+ RLH
Sbjct: 1312 SLVKRLH 1318
>sp|O49498|DML3_ARATH DEMETER-like protein 3 OS=Arabidopsis thaliana GN=DML3 PE=2 SV=2
Length = 1044
Score = 516 bits (1329), Expect = e-145, Method: Compositional matrix adjust.
Identities = 273/571 (47%), Positives = 356/571 (62%), Gaps = 48/571 (8%)
Query: 398 TSKSKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTI 457
T+K K+ + + DW++LRR G RPE DS++W VR + N + TI
Sbjct: 484 TAKRKNEKTGIIEDEIVDWNNLRRMYTKEGS---RPEMHMDSVNWSDVRLSGQNVLETTI 540
Query: 458 KERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRL 517
K+RG +L+ RI FLN V +G++DLEWLR+ P K YLL G+GLKS ECVRL
Sbjct: 541 KKRGQFRILSERILKFLNDEVNQNGNIDLEWLRNAPSHLVKRYLLEIEGIGLKSAECVRL 600
Query: 518 LTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQ 577
L L H AFPVDTNVGRIAVRLG VPL+PLP +Q+H L YP ++SIQKYLWPRLCKL Q
Sbjct: 601 LGLKHHAFPVDTNVGRIAVRLGLVPLEPLPNGVQMHQLFEYPSMDSIQKYLWPRLCKLPQ 660
Query: 578 RTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKAIVSAN 637
TLYELHYQMITFGKVFCTK+ PNCNACPM+ EC++FASA+ SS++ L PEEK
Sbjct: 661 ETLYELHYQMITFGKVFCTKTIPNCNACPMKSECKYFASAYVSSKVLLESPEEKM----- 715
Query: 638 ENRTNTQNPAMMINQLPLPLTHATDLPVGKL-------EIAVNNC-------EPIIEEPA 683
P +N H+ D+ V E + C +P++E P+
Sbjct: 716 ------HEPNTFMN------AHSQDVAVDMTSNINLVEECVSSGCSDQAICYKPLVEFPS 763
Query: 684 TPEPERVQVSEN-DIEDT----FCEDPEEIPTIKLNMKEFTQTLQNYMQENLELQEGD-- 736
+P R ++ E+ DIED + +P I ++ +++++ + + + D
Sbjct: 764 SP---RAEIPESTDIEDVPFMNLYQSYASVPKIDFDLDALKKSVEDALVISGRMSSSDEE 820
Query: 737 MSKALVALTAGAASIPAP---KLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYL 793
+SKALV T A IP K+K +RLRTEH VY LPD+H LL E+R+ DDP YL
Sbjct: 821 ISKALVIPTPENACIPIKPPRKMKYYNRLRTEHVVYVLPDNHELLHDFERRKLDDPSPYL 880
Query: 794 LAIWTPGETANSIQPPESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAM 853
LAIW PGET++S PP+ +CSS + K+C K C C ++RE I RGTILIPCRTAM
Sbjct: 881 LAIWQPGETSSSFVPPKKKCSS-DGSKLCKIKNCSYCWTIREQNSNIFRGTILIPCRTAM 939
Query: 854 RGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGI 913
RG+FPLNGTYFQ NEVFADH++SL PI RE L +R +Y G+++ SIFK L T I
Sbjct: 940 RGAFPLNGTYFQTNEVFADHETSLNPIVFRRELCKGLEKRALYCGSTVTSIFKLLDTRRI 999
Query: 914 QHCFWRGYVCVRGFDQKSRAPRPLMARLHFP 944
+ CFW G++C+R FD+K R P+ L+ RLH P
Sbjct: 1000 ELCFWTGFLCLRAFDRKQRDPKELVRRLHTP 1030
>sp|Q9WYK0|END3_THEMA Endonuclease III OS=Thermotoga maritima (strain ATCC 43589 / MSB8 /
DSM 3109 / JCM 10099) GN=nth PE=3 SV=1
Length = 213
Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 47/160 (29%), Positives = 67/160 (41%), Gaps = 27/160 (16%)
Query: 455 NTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVEC 514
+ IKE GM A RI + LV +G PD +E LL G+G K+
Sbjct: 67 DLIKESGMYRQKAERIVEISRILVEKYGGR--------VPDSLEE-LLKLPGVGRKTANI 117
Query: 515 VRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCK 574
V + A VDT+V RI+ RLGWV + PE + L +L P + LW
Sbjct: 118 VLWVGFKKPALAVDTHVHRISNRLGWVKTRT-PEETEEALKKLLP------EDLWG---- 166
Query: 575 LDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
++ M+ FG+ C P C C ++ C +
Sbjct: 167 -------PINGSMVEFGRRICKPQNPLCEECFLKNHCEFY 199
>sp|Q4UK93|END3_RICFE Endonuclease III OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=nth PE=3 SV=1
Length = 213
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 70/164 (42%), Gaps = 27/164 (16%)
Query: 457 IKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVR 516
IK G+ N A I L+ ++ S VP D KE L+ G+G K+ V
Sbjct: 76 IKSIGLFNSKAKNIIALCKILISNYQS-------SVPND-FKE-LIKLPGVGRKTANVVL 126
Query: 517 LLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLD 576
VDT+V R+A R+G PE ++ LL++ ++
Sbjct: 127 NCLFGMPTMAVDTHVFRVAKRIGLARGNS-PEIVEKELLQI-----------------IN 168
Query: 577 QRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFAS 620
++ L H+ +I G+ C KP+C+ CP++ C ++ S S
Sbjct: 169 EKWLTHAHHWLILHGRYICKARKPDCDICPIKEYCEYYNSPIIS 212
>sp|Q8SRB8|NTH1_ENCCU Endonuclease III homolog OS=Encephalitozoon cuniculi (strain GB-M1)
GN=NTH1 PE=1 SV=1
Length = 238
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 76/180 (42%), Gaps = 39/180 (21%)
Query: 437 KDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDK 496
+ L E V +DV I IK+ G +N A +K E LR+ +
Sbjct: 88 RGGLTIERVANSDVKHINECIKKVGFHNRKAANLKKIA------------EILREKGLPR 135
Query: 497 AKEYLLSFRGLGLKSVECVRLLTLHH-----LAFPVDTNVGRIAVRLGWVPLQPLPESLQ 551
+ L+S G+G K + LL + H + VDT+V RI+ R+G V + + ES +
Sbjct: 136 EMKDLISLPGIGNK----MALLYMSHACNRTVGISVDTHVHRISNRIGLVRTRDV-ESTR 190
Query: 552 LHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
L + P E W +T+ + ++ FG+ C +P C C +RG C
Sbjct: 191 RELERVVPRKE------W--------KTINNI---LVGFGQTICVAKRPRCEECCIRGRC 233
>sp|O05956|END3_RICPR Endonuclease III OS=Rickettsia prowazekii (strain Madrid E) GN=nth
PE=3 SV=1
Length = 212
Score = 47.4 bits (111), Expect = 5e-04, Method: Composition-based stats.
Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 19/127 (14%)
Query: 494 PDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 553
P+ KE L+ G+G K+ V VDT+V R++ R+G
Sbjct: 105 PNNFKE-LVKLPGVGRKTANVVLNCLFAMPTMAVDTHVFRVSKRIG-------------- 149
Query: 554 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
L ++K L L +D++ L H+ +I G+ C KP CN CP++ C +
Sbjct: 150 -LAKGNTAAIVEKEL---LQIIDEKWLTYAHHWLILHGRYICKARKPGCNICPIKEYCEY 205
Query: 614 FASAFAS 620
+ + F+S
Sbjct: 206 YINTFSS 212
>sp|P39788|END3_BACSU Probable endonuclease III OS=Bacillus subtilis (strain 168) GN=nth
PE=3 SV=1
Length = 219
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 79/184 (42%), Gaps = 35/184 (19%)
Query: 429 KKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEW 488
K +RPE D+ AV + ++ IK G+ A I+ ++ D+G
Sbjct: 58 KYKRPE------DYLAV---PLEELQQDIKSIGLYRNKAKNIQKLSKMIIEDYGG----- 103
Query: 489 LRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPE 548
+VP D+ + L+ G+G K+ V + A VDT+V R++ RLG +
Sbjct: 104 --EVPRDR--DELVKLPGVGRKTANVVVSVAFGVPAIAVDTHVERVSKRLGICRWKD--- 156
Query: 549 SLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMR 608
VLE ++K L ++ K D H+++I FG+ C P C CP+
Sbjct: 157 ----------SVLE-VEKTLMRKVPKEDWSVT---HHRLIFFGRYHCKAQSPRCAECPLL 202
Query: 609 GECR 612
CR
Sbjct: 203 SLCR 206
>sp|Q92GH4|END3_RICCN Endonuclease III OS=Rickettsia conorii (strain ATCC VR-613 / Malish
7) GN=nth PE=3 SV=1
Length = 210
Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 18/114 (15%)
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
L+ G+G K+ V VDT+V R+A R+G + PE ++ LL++
Sbjct: 111 LIKLPGVGRKTANVVLNCLFGMPTMAVDTHVFRVANRIG-LAKGDTPEIVENELLQI--- 166
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
+D + L H+ +I G+ C KP+C+ CP++ C ++
Sbjct: 167 --------------IDTKWLTHAHHWLILHGRYICKARKPDCDICPIKEYCDYY 206
>sp|Q58829|Y1434_METJA Putative endonuclease MJ1434 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1434 PE=3 SV=1
Length = 220
Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 43/175 (24%), Positives = 77/175 (44%), Gaps = 16/175 (9%)
Query: 437 KDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDK 496
+D L+ + D +K+ I+ G N+ A R+K+ +V ++G+ + D
Sbjct: 59 EDLLEEVKILNVDEDKLKELIRPAGFYNLKAKRLKNVTKFIVENYGNTEEMAKTDKDTLI 118
Query: 497 AKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLE 556
+ LLS G+G ++ + + L L +F VD R+ RLG + + + ++
Sbjct: 119 LRAELLSINGVGKETADSILLYALDRESFVVDAYTKRMFSRLGVINEKAKYDEIK----- 173
Query: 557 LYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
E +K L P+ D E H ++ K FC K K C+ CP++ C
Sbjct: 174 -----EIFEKNL-PK----DLEIYKEYHALIVEHCKKFCRK-KALCDNCPIKEFC 217
>sp|P29588|GTMR_METTF G/T mismatches repair enzyme OS=Methanobacterium thermoformicicum
PE=1 SV=1
Length = 221
Score = 42.7 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 54/240 (22%), Positives = 87/240 (36%), Gaps = 43/240 (17%)
Query: 394 IDDATSKSKSTRVS------KEKQNDFDWDSLR------------RQVEANGGKKERPEH 435
+DDAT+K + VS + DF W R R+ A KK +
Sbjct: 1 MDDATNKKRKVFVSTILTFWNTDRRDFPWRHTRDPYVILITEILLRRTTAGHVKKIYDKF 60
Query: 436 TKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPD 495
+E + ++IA IKE G++N A ++K+ ++ D+G VP
Sbjct: 61 FVKYKCFEDILKTPKSEIAKDIKEIGLSNQRAEQLKELARVVINDYGG-------RVP-- 111
Query: 496 KAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLL 555
+ ++ +L G+G + V L A VD N R+ R +
Sbjct: 112 RNRKAILDLPGVGKYTCAAVMCLAFGKKAAMVDANFVRVINR---------------YFG 156
Query: 556 ELYPVLESIQKYLWPRLCKL-DQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
Y L K LW L + + ++ F + C KP C C M C ++
Sbjct: 157 GSYENLNYNHKALWELAETLVPGGKCRDFNLGLMDFSAIICAPRKPKCEKCGMSKLCSYY 216
>sp|Q68W04|END3_RICTY Endonuclease III OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=nth PE=3 SV=1
Length = 212
Score = 42.4 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 19/127 (14%)
Query: 494 PDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 553
P+ KE L+ G+G K+ V VDT+V R++ R+G
Sbjct: 105 PNDFKE-LVKLPGVGRKTANVVLNCLFAMPTMAVDTHVFRVSKRIG-------------- 149
Query: 554 LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
L ++K L L +D++ L H+ ++ G+ C KP+C C ++ C +
Sbjct: 150 -LAKGNTTVIVEKEL---LQIIDEKWLTHAHHWLVLHGRYICKARKPSCRICHIKEYCEY 205
Query: 614 FASAFAS 620
+ + FAS
Sbjct: 206 YINTFAS 212
>sp|Q9V3I8|OGG1_DROME N-glycosylase/DNA lyase OS=Drosophila melanogaster GN=Ogg1 PE=2
SV=2
Length = 343
Score = 40.4 bits (93), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 489 LRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHL-AFPVDTNVGRIA 535
L+ +P +KA+E L G+G K +C+ L+++ HL + PVD ++ RIA
Sbjct: 229 LKSMPFEKAREELTLLPGIGYKVADCICLMSMGHLESVPVDIHIYRIA 276
>sp|P53397|OGG1_YEAST N-glycosylase/DNA lyase OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=OGG1 PE=1 SV=1
Length = 376
Score = 40.4 bits (93), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 490 RDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAF-PVDTNVGRIAVR 537
+D + +E+L+S+ G+G K +CV L+ LH PVD +V RIA R
Sbjct: 221 KDAQYEDVREHLMSYNGVGPKVADCVCLMGLHMDGIVPVDVHVSRIAKR 269
>sp|P54137|NTH1_CAEEL Probable endonuclease III homolog OS=Caenorhabditis elegans
GN=nth-1 PE=1 SV=2
Length = 298
Score = 38.9 bits (89), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 19/112 (16%)
Query: 501 LLSFRGLGLKSVECVRLLTLHH-LAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
L + G+G K V + + VDT+V RI+ RLGW+ PE Q L L P
Sbjct: 149 LCALPGVGPKMANLVMQIAWGECVGIAVDTHVHRISNRLGWIKTS-TPEKTQKALEILLP 207
Query: 560 VLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGEC 611
K W +++ ++ FG++ C +P C C R C
Sbjct: 208 ------KSEW-----------QPINHLLVGFGQMQCQPVRPKCGTCLCRFTC 242
>sp|Q8R5G2|MUTYH_RAT A/G-specific adenine DNA glycosylase OS=Rattus norvegicus GN=Mutyh
PE=2 SV=1
Length = 516
Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 56/156 (35%), Gaps = 20/156 (12%)
Query: 506 GLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQ 565
G+G + + + + VD NV R+ R+ + P + HL +L L
Sbjct: 185 GVGRYTAGAIASIAFDQVTGVVDGNVIRVLCRVRAIGADPTSSFVSHHLWDLAQQL---- 240
Query: 566 KYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLAL 625
+D + + + G CT +P CN CP++ CR AL
Sbjct: 241 ---------VDPARPGDFNQAAMELGATVCTPQRPLCNHCPVQSLCRAHQRVGQGRLSAL 291
Query: 626 PGPEEKAIVSANENR-------TNTQNPAMMINQLP 654
PG + + N + TN +P M + P
Sbjct: 292 PGSPDIEECALNTRQCQLCLPSTNPWDPNMGVVNFP 327
>sp|O08760|OGG1_MOUSE N-glycosylase/DNA lyase OS=Mus musculus GN=Ogg1 PE=2 SV=2
Length = 345
Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 482 GSVDLEWLRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHH-LAFPVDTNVGRIAVR-LG 539
G L+ LR P ++A + L + G+G K +C+ L+ L A PVD +V +IA R G
Sbjct: 221 GPAWLQQLRVAPYEEAHKALCTLPGVGAKVADCICLMALDKPQAVPVDVHVWQIAHRDYG 280
Query: 540 WVP 542
W P
Sbjct: 281 WHP 283
>sp|Q99P21|MUTYH_MOUSE A/G-specific adenine DNA glycosylase OS=Mus musculus GN=Mutyh PE=2
SV=2
Length = 515
Score = 36.6 bits (83), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 45/122 (36%), Gaps = 13/122 (10%)
Query: 506 GLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQ 565
G+G + + + + VD NV R+ R+ + P + HL L L
Sbjct: 185 GVGRYTAGAIASIAFDQVTGVVDGNVLRVLCRVRAIGADPTSTLVSHHLWNLAQQL---- 240
Query: 566 KYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLAL 625
+D + + + G CT +P C+ CP++ CR + AL
Sbjct: 241 ---------VDPARPGDFNQAAMELGATVCTPQRPLCSHCPVQSLCRAYQRVQRGQLSAL 291
Query: 626 PG 627
PG
Sbjct: 292 PG 293
>sp|O35980|NTHL1_MOUSE Endonuclease III-like protein 1 OS=Mus musculus GN=Nthl1 PE=2 SV=1
Length = 300
Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 21/123 (17%)
Query: 491 DVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLA-FPVDTNVGRIAVRLGWVP-LQPLPE 548
D+P A+ L++ G+G K + ++ VDT+V RIA RL W + PE
Sbjct: 191 DIPASVAE--LVALPGVGPKMAHLAMAVAWGTISGIAVDTHVHRIANRLRWTKKMTKTPE 248
Query: 549 SLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMR 608
+ +L E P + LW E++ ++ FG+ C P C AC +
Sbjct: 249 ETRKNLEEWLP------RVLWS-----------EVNGLLVGFGQQICLPVHPRCQACLNK 291
Query: 609 GEC 611
C
Sbjct: 292 ALC 294
>sp|Q89A45|MUTY_BUCBP A/G-specific adenine glycosylase OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=mutY PE=3 SV=1
Length = 351
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 587 MITFGKVFCTKSKPNCNACPMRGECRHFAS 616
+I G + C KS P CN CP++ C+ + +
Sbjct: 182 LIDIGALICLKSNPKCNICPLKSTCKSYLN 211
>sp|P0AB83|END3_ECOLI Endonuclease III OS=Escherichia coli (strain K12) GN=nth PE=1 SV=1
Length = 211
Score = 35.8 bits (81), Expect = 1.7, Method: Composition-based stats.
Identities = 37/164 (22%), Positives = 63/164 (38%), Gaps = 27/164 (16%)
Query: 450 VNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGL 509
V + IK G+ N A I L+ H +VP D+A L + G+G
Sbjct: 69 VEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNG-------EVPEDRAA--LEALPGVGR 119
Query: 510 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 569
K+ V VDT++ R+ R + P + + E ++ LL++ P +
Sbjct: 120 KTANVVLNTAFGWPTIAVDTHIFRVCNRTQFAPGKNV-EQVEEKLLKVVPAEFKV----- 173
Query: 570 PRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
+ H+ +I G+ C KP C +C + C +
Sbjct: 174 ------------DCHHWLILHGRYTCIARKPRCGSCIIEDLCEY 205
>sp|P0AB84|END3_ECOL6 Endonuclease III OS=Escherichia coli O6:H1 (strain CFT073 / ATCC
700928 / UPEC) GN=nth PE=3 SV=1
Length = 211
Score = 35.8 bits (81), Expect = 1.7, Method: Composition-based stats.
Identities = 37/164 (22%), Positives = 63/164 (38%), Gaps = 27/164 (16%)
Query: 450 VNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGL 509
V + IK G+ N A I L+ H +VP D+A L + G+G
Sbjct: 69 VEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNG-------EVPEDRAA--LEALPGVGR 119
Query: 510 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 569
K+ V VDT++ R+ R + P + + E ++ LL++ P +
Sbjct: 120 KTANVVLNTAFGWPTIAVDTHIFRVCNRTQFAPGKNV-EQVEEKLLKVVPAEFKV----- 173
Query: 570 PRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
+ H+ +I G+ C KP C +C + C +
Sbjct: 174 ------------DCHHWLILHGRYTCIARKPRCGSCIIEDLCEY 205
>sp|P17802|MUTY_ECOLI A/G-specific adenine glycosylase OS=Escherichia coli (strain K12)
GN=mutY PE=1 SV=1
Length = 350
Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 587 MITFGKVFCTKSKPNCNACPMRGEC 611
M+ G + CT+SKP C+ CP++ C
Sbjct: 184 MMDLGAMICTRSKPKCSLCPLQNGC 208
>sp|P44319|END3_HAEIN Endonuclease III OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=nth PE=3 SV=1
Length = 211
Score = 34.7 bits (78), Expect = 3.6, Method: Composition-based stats.
Identities = 37/164 (22%), Positives = 66/164 (40%), Gaps = 27/164 (16%)
Query: 450 VNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFRGLGL 509
++ + + IK G+ N A I L+ H +VP ++ E L + G+G
Sbjct: 69 LDGLKSYIKTIGLFNSKAENIIKTCRDLIEKHNG-------EVPENR--EALEALAGVGR 119
Query: 510 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLW 569
K+ V H VDT++ R+ R + + ++ V E + K +
Sbjct: 120 KTANVVLNTAFGHPTIAVDTHIFRVCNRTNFAAGK-----------DVVKVEEKLLKVV- 167
Query: 570 PRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRH 613
P K+D +H+ +I G+ C KP C +C + C +
Sbjct: 168 PNEFKVD------VHHWLILHGRYTCIARKPRCGSCIIEDLCEY 205
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 356,611,400
Number of Sequences: 539616
Number of extensions: 15124351
Number of successful extensions: 38410
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 291
Number of HSP's that attempted gapping in prelim test: 36150
Number of HSP's gapped (non-prelim): 1730
length of query: 960
length of database: 191,569,459
effective HSP length: 127
effective length of query: 833
effective length of database: 123,038,227
effective search space: 102490843091
effective search space used: 102490843091
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 66 (30.0 bits)