RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 002141
(960 letters)
>d1pu6a_ a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III (MagIII)
{Helicobacter pylori [TaxId: 210]}
Length = 217
Score = 93.7 bits (232), Expect = 4e-22
Identities = 29/170 (17%), Positives = 61/170 (35%), Gaps = 10/170 (5%)
Query: 429 KKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEW 488
K D ++ + + + +K+A ++ G N A R+ D +++D +
Sbjct: 55 KNAFILENDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLSGNILKDF-----QS 109
Query: 489 LRDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPE 548
+ + +E+LL +G+G +S + + VD +LG +
Sbjct: 110 FENFKQEVTREWLLDQKGIGKESADAILCYACAKEVMVVDKYSYLFLKKLGIEI--EDYD 167
Query: 549 SLQLHLLELYPVLESIQKYLWPRLCKLDQRTLY-ELHYQMITFGKVFCTK 597
LQ + E++ L + LY H +++ F K
Sbjct: 168 ELQHFFEKGVQ--ENLNSALALYENTISLAQLYARFHGKIVEFSKQKLEL 215
>d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId:
562]}
Length = 214
Score = 56.1 bits (134), Expect = 2e-09
Identities = 37/174 (21%), Positives = 66/174 (37%), Gaps = 26/174 (14%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEY 500
+ ++ I+ G+ A I+ L+ + +VP D+ +
Sbjct: 61 TPHDYIAVPLEELEQDIRSIGLYRNKARNIQKLCAMLIDKYNG-------EVPRDR--DE 111
Query: 501 LLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPV 560
L+ G+G K+ V + A VDT+V R++ RLG+ ++ L+++ P
Sbjct: 112 LMKLPGVGRKTANVVVSVAFGVPAIAVDTHVERVSKRLGFCRWDDSVLEVEKTLMKIIPK 171
Query: 561 LESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
E H++MI FG+ C P C +CP+ CR
Sbjct: 172 EEW-----------------SITHHRMIFFGRYHCKAQSPQCPSCPLLHLCREG 208
>d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId:
562]}
Length = 211
Score = 55.7 bits (133), Expect = 3e-09
Identities = 32/185 (17%), Positives = 58/185 (31%), Gaps = 27/185 (14%)
Query: 430 KERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWL 489
K + + A+ V + IK G+ N A I L+ H E
Sbjct: 49 KATAKLYPVANTPAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNGEVPEDR 108
Query: 490 RDVPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPES 549
+ + G+G K+ V VDT++ R+ R + P +
Sbjct: 109 AAL---------EALPGVGRKTANVVLNTAFGWPTIAVDTHIFRVCNRTQFAPGKN---- 155
Query: 550 LQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRG 609
+++ L + + H+ +I G+ C KP C +C +
Sbjct: 156 --------------VEQVEEKLLKVVPAEFKVDCHHWLILHGRYTCIARKPRCGSCIIED 201
Query: 610 ECRHF 614
C +
Sbjct: 202 LCEYK 206
>d1kg2a_ a.96.1.2 (A:) Catalytic domain of MutY {Escherichia coli
[TaxId: 562]}
Length = 224
Score = 53.5 bits (127), Expect = 2e-08
Identities = 26/124 (20%), Positives = 47/124 (37%), Gaps = 13/124 (10%)
Query: 493 PPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQL 552
+ E + + G+G + + L+L +D NV R+ R V P + ++
Sbjct: 103 KFPETFEEVAALPGVGRSTAGAILSLSLGKHFPILDGNVKRVLARCYAVSGWPGKKEVEN 162
Query: 553 HLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECR 612
L L + + M+ G + CT+SKP C+ CP++ C
Sbjct: 163 KLWSLSEQVTPAVGV-------------ERFNQAMMDLGAMICTRSKPKCSLCPLQNGCI 209
Query: 613 HFAS 616
A+
Sbjct: 210 AAAN 213
>d2noha1 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 190
Score = 52.5 bits (125), Expect = 3e-08
Identities = 27/144 (18%), Positives = 52/144 (36%), Gaps = 10/144 (6%)
Query: 441 DWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSV-DLEWLRDVPPDKAKE 499
+A+ +V A + ++ + G + L+ LR+ ++A +
Sbjct: 48 SLQALAGPEVEAHLRK----LGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHK 103
Query: 500 YLLSFRGLGLKSVECVRLLTLHHL-AFPVDTNVGRIAVRL-GWVPLQPLPESLQLHLLEL 557
L G+G + +C+ L+ L A PVD ++ IA R W P + +
Sbjct: 104 ALCILPGVGTQVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGP---SPQT 160
Query: 558 YPVLESIQKYLWPRLCKLDQRTLY 581
L + + LW L+
Sbjct: 161 NKELGNFFRSLWGPYAGWAAAVLF 184
>d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon
Methanobacterium thermoformicicum [TaxId: 145262]}
Length = 217
Score = 49.2 bits (116), Expect = 5e-07
Identities = 25/116 (21%), Positives = 36/116 (31%), Gaps = 16/116 (13%)
Query: 500 YLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 559
+L G+G + V L A VD N R+ R Y
Sbjct: 114 AILDLPGVGKYTCAAVMCLAFGKKAAMVDANFVRVINRYFGGS---------------YE 158
Query: 560 VLESIQKYLWPRLCKL-DQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHF 614
L K LW L + + ++ F + C KP C C M C ++
Sbjct: 159 NLNYNHKALWELAETLVPGGKCRDFNLGLMDFSAIICAPRKPKCEKCGMSKLCSYY 214
>d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 221
Score = 48.8 bits (115), Expect = 7e-07
Identities = 30/171 (17%), Positives = 57/171 (33%), Gaps = 15/171 (8%)
Query: 446 RCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPDKAKEYLLSFR 505
R + +A+ ++ + + L V + VP D + +
Sbjct: 56 RFPTLEALADADEDEVLKAWEGLGYYSRVRNLHAAVKEVKTRYGGKVPDDP--DEFSRLK 113
Query: 506 GLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQ 565
G+G +V V L V+ NV R+ RL V + +
Sbjct: 114 GVGPYTVGAVLSLAYGVPEPAVNGNVMRVLSRLFLVTDDIAKC-------------STRK 160
Query: 566 KYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFAS 616
++ + + +I G + CT +P+C CP++ C+ FA
Sbjct: 161 RFEQIVREIMAYENPGAFNEALIELGALVCTPRRPSCLLCPVQAYCQAFAE 211
>d1go3e1 b.40.4.5 (E:79-184) C-terminal domain of RNA polymerase II
subunit RBP7 (RpoE) {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 106
Score = 28.1 bits (62), Expect = 1.9
Identities = 10/64 (15%), Positives = 19/64 (29%)
Query: 176 FVELLQMVGSTMLHGNYNHRNGHMSSDENSKDEHSQFQTLESNTQRVKVKDIDDPKVLSR 235
FV L + G + + + E + + + R ++ I R
Sbjct: 20 FVRLGPLDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLKAERKR 79
Query: 236 VSSI 239
S I
Sbjct: 80 GSKI 83
>d1b6aa1 a.4.5.25 (A:375-448) Methionine aminopeptidase, insert
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 26.6 bits (59), Expect = 3.4
Identities = 12/67 (17%), Positives = 20/67 (29%), Gaps = 9/67 (13%)
Query: 609 GECRHFASAFASSRLALPGPEEKAIVSANENRTNTQNPAMMINQLPLPLTHATDLPVGKL 668
EC H+ F + + P K +++ T L L K
Sbjct: 4 MECSHYMKNFDVGHVPIRLPRTKHLLNVINENFGT---------LAFCRRWLDRLGESKY 54
Query: 669 EIAVNNC 675
+A+ N
Sbjct: 55 LMALKNL 61
>d2c8aa1 d.166.1.1 (A:45-251) Exoenzyme c3 {Clostridium botulinum
[TaxId: 1491]}
Length = 207
Score = 28.1 bits (62), Expect = 4.0
Identities = 11/56 (19%), Positives = 26/56 (46%)
Query: 350 KISSGSIDAIESHNALYNRENTQLKSSVSDQNKYDHSFSKELNGIDDATSKSKSTR 405
+S +AI S+ + N +L+ + N + + K++ +D + +K K+
Sbjct: 23 GLSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNKMKTPE 78
>d1r45a_ d.166.1.1 (A:) Exoenzyme c3 {Clostridium botulinum C
bacteriophage [TaxId: 12336]}
Length = 201
Score = 27.4 bits (60), Expect = 6.7
Identities = 11/56 (19%), Positives = 27/56 (48%)
Query: 350 KISSGSIDAIESHNALYNRENTQLKSSVSDQNKYDHSFSKELNGIDDATSKSKSTR 405
+S +AI+ + ++ N L+++ ++N +++ ID + SK K +
Sbjct: 24 GLSKPEQEAIKFYTRDASKINGPLRANQGNENGLPADILQKVKLIDQSFSKMKMPQ 79
>d1dlca2 b.77.2.1 (A:290-499) delta-Endotoxin (insectocide), middle
domain {Bacillus thuringiensis tenebrionis, CRYIIIA
(BT13) [TaxId: 1444]}
Length = 210
Score = 27.3 bits (60), Expect = 7.9
Identities = 14/122 (11%), Positives = 38/122 (31%), Gaps = 10/122 (8%)
Query: 90 REVVSSNNSLESSTSVVSSINESKCKLMNSSEIYPETYNDVLSSPNSLDSSFAPF----- 144
R + SN+ + S S + N ++Y +++ N A +
Sbjct: 78 RPSIGSNDIITSPFYGNKSSEPVQNLEFNGEKVY-----RAVANTNLAVWPSAVYSGVTK 132
Query: 145 ADGTISSSNSNSDAGDSSNVPTLNSFNGSNSFVELLQMVGSTMLHGNYNHRNGHMSSDEN 204
+ + + ++ + + + +S +L L Y+H+ ++
Sbjct: 133 VEFSQYNDQTDEASTQTYDSKRNVGAVSWDSIDQLPPETTDEPLEKGYSHQLNYVMCFLM 192
Query: 205 SK 206
Sbjct: 193 QG 194
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.130 0.380
Gapped
Lambda K H
0.267 0.0496 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,379,469
Number of extensions: 155706
Number of successful extensions: 267
Number of sequences better than 10.0: 1
Number of HSP's gapped: 266
Number of HSP's successfully gapped: 14
Length of query: 960
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 866
Effective length of database: 1,116,976
Effective search space: 967301216
Effective search space used: 967301216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.3 bits)