Query 002143
Match_columns 960
No_of_seqs 302 out of 1421
Neff 4.0
Searched_HMMs 46136
Date Thu Mar 28 17:29:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002143.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002143hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0323 TFIIF-interacting CTD 100.0 4.8E-48 1E-52 445.1 17.3 336 609-959 112-531 (635)
2 TIGR02250 FCP1_euk FCP1-like p 100.0 3.5E-34 7.6E-39 282.8 12.8 155 641-805 1-156 (156)
3 KOG1605 TFIIF-interacting CTD 100.0 2.1E-34 4.4E-39 305.4 9.3 172 640-864 83-258 (262)
4 TIGR02251 HIF-SF_euk Dullard-l 100.0 1.4E-30 3E-35 257.4 13.5 158 646-845 1-159 (162)
5 PF03031 NIF: NLI interacting 100.0 4.4E-30 9.6E-35 248.7 12.6 157 647-859 1-159 (159)
6 TIGR02245 HAD_IIID1 HAD-superf 99.9 8.9E-28 1.9E-32 245.9 12.8 163 641-864 16-190 (195)
7 KOG2832 TFIIF-interacting CTD 99.9 6.2E-23 1.3E-27 223.8 11.5 171 631-867 173-345 (393)
8 smart00577 CPDc catalytic doma 99.8 8.9E-21 1.9E-25 184.2 12.9 144 645-806 1-145 (148)
9 COG5190 FCP1 TFIIF-interacting 99.8 2E-20 4.4E-25 207.9 9.4 181 633-864 199-380 (390)
10 COG5190 FCP1 TFIIF-interacting 99.5 1.4E-14 3E-19 161.7 9.5 274 638-943 18-350 (390)
11 PF12738 PTCB-BRCT: twin BRCT 99.4 3.2E-13 6.8E-18 114.0 6.9 63 873-940 1-63 (63)
12 PF00533 BRCT: BRCA1 C Terminu 99.4 1.1E-12 2.5E-17 111.7 7.3 75 866-945 2-78 (78)
13 KOG3226 DNA repair protein [Re 99.3 9.6E-13 2.1E-17 144.4 4.9 88 866-958 314-401 (508)
14 smart00292 BRCT breast cancer 99.2 5.1E-11 1.1E-15 99.2 7.4 77 868-948 1-80 (80)
15 cd00027 BRCT Breast Cancer Sup 99.2 7.5E-11 1.6E-15 96.1 8.0 71 872-946 1-72 (72)
16 PLN03122 Poly [ADP-ribose] pol 98.5 1.5E-07 3.4E-12 114.1 7.4 87 866-958 186-277 (815)
17 PLN03123 poly [ADP-ribose] pol 98.4 2.9E-07 6.4E-12 113.7 6.9 89 865-958 389-480 (981)
18 KOG1929 Nucleotide excision re 98.2 1.5E-06 3.3E-11 105.3 5.4 100 856-960 90-190 (811)
19 PRK14350 ligA NAD-dependent DN 97.9 5.6E-05 1.2E-09 91.1 10.3 74 868-945 592-665 (669)
20 KOG1929 Nucleotide excision re 97.8 7.4E-06 1.6E-10 99.6 2.6 98 857-959 481-578 (811)
21 PRK07956 ligA NAD-dependent DN 97.8 8.7E-05 1.9E-09 89.5 10.4 73 870-946 591-663 (665)
22 COG4996 Predicted phosphatase 97.7 7.1E-05 1.5E-09 74.3 7.2 135 648-803 2-146 (164)
23 KOG0323 TFIIF-interacting CTD 97.7 3.9E-06 8.4E-11 99.7 -2.1 251 458-730 377-634 (635)
24 PRK06063 DNA polymerase III su 97.7 0.0001 2.2E-09 81.4 7.8 72 869-945 232-305 (313)
25 PRK14351 ligA NAD-dependent DN 97.7 0.0002 4.4E-09 86.6 10.9 74 869-946 609-683 (689)
26 cd01427 HAD_like Haloacid deha 97.6 9.7E-05 2.1E-09 66.6 5.3 62 648-738 1-63 (139)
27 COG0272 Lig NAD-dependent DNA 97.5 0.00027 5.8E-09 84.6 9.1 73 868-944 593-665 (667)
28 KOG3524 Predicted guanine nucl 97.5 3.2E-05 7E-10 91.6 1.4 80 869-958 118-197 (850)
29 PRK06195 DNA polymerase III su 97.5 0.00025 5.5E-09 78.0 8.0 71 869-943 220-304 (309)
30 TIGR01685 MDP-1 magnesium-depe 97.4 0.0002 4.4E-09 73.3 6.1 138 647-799 3-153 (174)
31 TIGR01681 HAD-SF-IIIC HAD-supe 97.4 0.00013 2.8E-09 70.2 3.4 80 700-787 29-119 (128)
32 KOG3548 DNA damage checkpoint 97.3 0.00016 3.4E-09 88.0 4.5 92 861-958 916-1035(1176)
33 TIGR01684 viral_ppase viral ph 97.3 0.00054 1.2E-08 75.8 7.2 74 641-751 121-196 (301)
34 TIGR00575 dnlj DNA ligase, NAD 97.2 0.00047 1E-08 83.1 7.0 69 868-940 583-651 (652)
35 KOG2043 Signaling protein SWIF 97.2 0.00051 1.1E-08 85.1 6.3 79 873-959 660-739 (896)
36 COG5275 BRCT domain type II [G 97.1 0.00082 1.8E-08 71.2 6.3 80 862-945 149-229 (276)
37 PHA03398 viral phosphatase sup 97.1 0.00086 1.9E-08 74.3 6.7 74 641-751 123-198 (303)
38 PF12689 Acid_PPase: Acid Phos 97.0 0.00084 1.8E-08 68.8 5.2 121 646-787 3-135 (169)
39 TIGR01662 HAD-SF-IIIA HAD-supe 97.0 0.0025 5.5E-08 60.3 7.8 101 647-785 1-112 (132)
40 KOG4362 Transcriptional regula 96.9 0.0011 2.5E-08 79.5 5.3 80 872-959 478-563 (684)
41 KOG0966 ATP-dependent DNA liga 96.8 0.0029 6.2E-08 76.8 7.9 81 868-952 632-715 (881)
42 TIGR01686 FkbH FkbH-like domai 96.7 0.0017 3.6E-08 71.5 5.1 107 645-787 2-114 (320)
43 TIGR01261 hisB_Nterm histidino 96.5 0.0066 1.4E-07 61.2 7.3 108 647-786 2-130 (161)
44 PF05152 DUF705: Protein of un 96.4 0.0073 1.6E-07 66.6 7.5 76 640-751 116-192 (297)
45 PHA02530 pseT polynucleotide k 96.4 0.0027 5.8E-08 68.2 4.1 130 643-799 155-292 (300)
46 TIGR01664 DNA-3'-Pase DNA 3'-p 96.3 0.014 3E-07 59.0 8.3 110 645-786 12-137 (166)
47 TIGR01672 AphA HAD superfamily 96.3 0.0046 9.9E-08 66.4 4.9 100 642-751 59-168 (237)
48 TIGR01656 Histidinol-ppas hist 96.3 0.018 4E-07 56.3 8.4 65 647-738 1-81 (147)
49 TIGR01489 DKMTPPase-SF 2,3-dik 96.2 0.0087 1.9E-07 58.8 6.2 49 699-749 71-120 (188)
50 TIGR01533 lipo_e_P4 5'-nucleot 96.2 0.013 2.9E-07 64.0 7.9 89 643-751 72-172 (266)
51 KOG2481 Protein required for n 96.2 0.0047 1E-07 72.1 4.4 80 867-958 325-415 (570)
52 PRK08942 D,D-heptose 1,7-bisph 96.0 0.017 3.6E-07 58.1 7.1 53 646-726 3-56 (181)
53 TIGR00213 GmhB_yaeD D,D-heptos 96.0 0.016 3.5E-07 58.2 6.9 28 699-726 25-53 (176)
54 TIGR01549 HAD-SF-IA-v1 haloaci 95.9 0.0069 1.5E-07 58.3 3.4 82 698-786 62-144 (154)
55 COG5163 NOP7 Protein required 95.7 0.01 2.2E-07 67.6 4.2 81 867-958 348-439 (591)
56 KOG3524 Predicted guanine nucl 94.7 0.008 1.7E-07 72.2 -0.2 95 858-958 199-293 (850)
57 PRK11009 aphA acid phosphatase 94.7 0.06 1.3E-06 58.0 6.2 100 643-751 60-170 (237)
58 TIGR02253 CTE7 HAD superfamily 94.4 0.042 9.1E-07 56.0 4.2 84 698-786 92-177 (221)
59 PF13419 HAD_2: Haloacid dehal 94.3 0.05 1.1E-06 51.7 4.1 86 697-787 74-161 (176)
60 PRK05446 imidazole glycerol-ph 94.2 0.17 3.7E-06 57.6 8.8 54 645-724 1-55 (354)
61 PRK08238 hypothetical protein; 94.1 0.063 1.4E-06 63.2 5.3 48 699-751 71-119 (479)
62 TIGR01689 EcbF-BcbF capsule bi 93.4 0.18 3.9E-06 49.7 6.3 49 701-750 25-86 (126)
63 TIGR02254 YjjG/YfnB HAD superf 93.1 0.11 2.5E-06 52.6 4.6 84 698-786 95-180 (224)
64 TIGR01449 PGP_bact 2-phosphogl 93.0 0.13 2.9E-06 51.9 4.9 97 698-799 83-181 (213)
65 TIGR01663 PNK-3'Pase polynucle 92.7 0.2 4.4E-06 59.8 6.4 113 643-786 165-294 (526)
66 PRK13288 pyrophosphatase PpaX; 92.5 0.22 4.9E-06 50.9 5.8 87 698-789 80-168 (214)
67 TIGR01509 HAD-SF-IA-v3 haloaci 92.5 0.16 3.5E-06 49.6 4.5 83 699-787 84-168 (183)
68 PLN02770 haloacid dehalogenase 92.4 0.18 3.8E-06 53.6 5.0 97 698-799 106-204 (248)
69 PRK06769 hypothetical protein; 92.3 0.25 5.4E-06 50.0 5.7 27 700-726 28-55 (173)
70 PRK11133 serB phosphoserine ph 92.2 0.11 2.5E-06 58.1 3.5 89 698-787 179-275 (322)
71 PF08645 PNK3P: Polynucleotide 92.1 0.2 4.4E-06 50.6 4.8 53 647-724 1-54 (159)
72 TIGR01668 YqeG_hyp_ppase HAD s 92.0 0.31 6.7E-06 49.2 5.9 93 644-786 23-118 (170)
73 TIGR01428 HAD_type_II 2-haloal 92.0 0.17 3.8E-06 51.0 4.2 83 699-786 91-175 (198)
74 TIGR01454 AHBA_synth_RP 3-amin 91.8 0.28 6E-06 49.9 5.4 97 698-799 73-171 (205)
75 PRK13222 phosphoglycolate phos 91.6 0.31 6.8E-06 49.6 5.6 87 698-789 91-179 (226)
76 PLN03243 haloacid dehalogenase 91.5 0.21 4.7E-06 54.0 4.5 87 698-789 107-195 (260)
77 PF13344 Hydrolase_6: Haloacid 91.4 0.39 8.5E-06 45.0 5.5 35 702-736 16-51 (101)
78 PRK09449 dUMP phosphatase; Pro 91.2 0.26 5.6E-06 50.6 4.5 83 699-786 94-178 (224)
79 TIGR01459 HAD-SF-IIA-hyp4 HAD- 91.2 0.42 9.1E-06 50.5 6.2 67 645-750 7-76 (242)
80 TIGR01993 Pyr-5-nucltdase pyri 91.1 0.16 3.5E-06 50.7 2.9 83 699-787 83-169 (184)
81 TIGR01422 phosphonatase phosph 90.7 0.34 7.3E-06 51.1 4.9 96 699-798 98-196 (253)
82 TIGR01675 plant-AP plant acid 90.5 0.71 1.5E-05 49.9 7.2 102 630-751 61-172 (229)
83 PRK10563 6-phosphogluconate ph 90.0 0.21 4.4E-06 51.3 2.5 96 698-799 86-182 (221)
84 COG2179 Predicted hydrolase of 89.7 0.58 1.3E-05 48.8 5.5 114 639-802 21-140 (175)
85 PRK10826 2-deoxyglucose-6-phos 89.5 0.45 9.7E-06 49.1 4.6 94 699-797 91-186 (222)
86 PRK00192 mannosyl-3-phosphogly 89.1 0.86 1.9E-05 49.0 6.5 57 646-739 4-61 (273)
87 PRK13226 phosphoglycolate phos 88.9 0.65 1.4E-05 48.6 5.3 87 698-789 93-181 (229)
88 TIGR01670 YrbI-phosphatas 3-de 88.7 1.2 2.5E-05 44.4 6.7 75 699-789 29-105 (154)
89 COG2503 Predicted secreted aci 88.3 0.68 1.5E-05 50.8 5.1 29 634-662 67-95 (274)
90 TIGR00338 serB phosphoserine p 88.3 0.69 1.5E-05 47.3 5.0 49 698-747 83-132 (219)
91 PRK14988 GMP/IMP nucleotidase; 88.2 0.44 9.4E-06 50.1 3.5 94 699-797 92-187 (224)
92 PRK11587 putative phosphatase; 87.8 0.8 1.7E-05 47.3 5.1 86 698-789 81-168 (218)
93 PF08282 Hydrolase_3: haloacid 87.7 0.94 2E-05 45.7 5.5 35 704-738 19-54 (254)
94 TIGR01456 CECR5 HAD-superfamil 87.7 0.85 1.8E-05 50.7 5.6 51 647-735 1-60 (321)
95 PRK10725 fructose-1-P/6-phosph 87.4 0.44 9.6E-06 47.3 2.8 86 699-790 87-173 (188)
96 PTZ00445 p36-lilke protein; Pr 87.3 1.1 2.4E-05 48.3 5.8 73 630-728 29-104 (219)
97 PLN02575 haloacid dehalogenase 87.3 0.74 1.6E-05 53.1 4.9 86 699-789 215-302 (381)
98 PRK13223 phosphoglycolate phos 87.2 0.91 2E-05 49.2 5.3 86 699-789 100-187 (272)
99 TIGR02009 PGMB-YQAB-SF beta-ph 87.2 0.52 1.1E-05 46.5 3.2 82 699-787 87-170 (185)
100 COG0561 Cof Predicted hydrolas 87.1 1.5 3.2E-05 46.5 6.7 59 645-740 2-61 (264)
101 COG1011 Predicted hydrolase (H 87.1 0.82 1.8E-05 46.6 4.6 84 699-787 98-182 (229)
102 TIGR03333 salvage_mtnX 2-hydro 86.5 1.2 2.6E-05 46.2 5.5 50 698-747 68-118 (214)
103 TIGR01487 SPP-like sucrose-pho 85.7 1.7 3.8E-05 44.7 6.2 38 703-740 21-59 (215)
104 TIGR02461 osmo_MPG_phos mannos 85.7 1.8 3.8E-05 45.9 6.4 35 704-738 19-54 (225)
105 PRK09456 ?-D-glucose-1-phospha 85.1 0.62 1.4E-05 47.4 2.6 89 697-789 81-171 (199)
106 PRK03669 mannosyl-3-phosphogly 85.0 2 4.4E-05 46.1 6.5 59 644-739 5-64 (271)
107 TIGR02463 MPGP_rel mannosyl-3- 84.7 1.7 3.6E-05 44.8 5.5 34 705-738 21-55 (221)
108 PLN02779 haloacid dehalogenase 84.1 1.2 2.7E-05 48.7 4.5 96 699-798 143-241 (286)
109 PRK13478 phosphonoacetaldehyde 84.0 1.7 3.6E-05 46.5 5.4 87 699-789 100-189 (267)
110 TIGR00099 Cof-subfamily Cof su 83.9 2.3 5E-05 44.9 6.2 37 703-739 19-56 (256)
111 TIGR01491 HAD-SF-IB-PSPlk HAD- 83.8 2.4 5.3E-05 42.3 6.1 50 699-749 79-129 (201)
112 PRK10530 pyridoxal phosphate ( 83.7 3.2 6.9E-05 43.8 7.2 58 646-740 3-61 (272)
113 PRK10513 sugar phosphate phosp 83.6 2.2 4.8E-05 45.2 6.0 57 646-739 3-60 (270)
114 TIGR02252 DREG-2 REG-2-like, H 83.3 1.7 3.6E-05 44.0 4.8 82 699-786 104-187 (203)
115 TIGR01544 HAD-SF-IE haloacid d 83.1 1.9 4.1E-05 48.0 5.4 52 698-749 119-174 (277)
116 TIGR01548 HAD-SF-IA-hyp1 haloa 83.0 1.7 3.6E-05 44.2 4.7 81 700-786 106-188 (197)
117 TIGR03351 PhnX-like phosphonat 82.7 1.7 3.8E-05 44.5 4.7 85 699-787 86-174 (220)
118 PF11019 DUF2608: Protein of u 82.7 2.1 4.5E-05 46.7 5.5 101 645-746 19-128 (252)
119 PRK01158 phosphoglycolate phos 82.2 3.5 7.5E-05 42.5 6.7 57 647-740 4-61 (230)
120 TIGR01484 HAD-SF-IIB HAD-super 82.0 2.3 5.1E-05 43.1 5.3 36 702-737 19-55 (204)
121 TIGR02247 HAD-1A3-hyp Epoxide 81.9 0.9 2E-05 46.3 2.3 87 698-789 92-182 (211)
122 PLN02940 riboflavin kinase 81.7 1.2 2.5E-05 51.0 3.3 84 699-787 92-178 (382)
123 PRK10444 UMP phosphatase; Prov 81.6 2.6 5.6E-05 45.5 5.7 52 648-737 3-55 (248)
124 PRK05601 DNA polymerase III su 81.4 2.8 6E-05 48.6 6.1 74 869-947 294-369 (377)
125 TIGR01691 enolase-ppase 2,3-di 81.3 1.8 4E-05 46.1 4.4 85 698-789 93-182 (220)
126 PF03767 Acid_phosphat_B: HAD 81.2 2.9 6.3E-05 44.8 5.9 78 643-740 69-156 (229)
127 PRK13225 phosphoglycolate phos 81.0 2.1 4.5E-05 46.9 4.8 81 699-787 141-223 (273)
128 TIGR02137 HSK-PSP phosphoserin 80.4 2.6 5.6E-05 44.3 5.0 50 699-749 67-116 (203)
129 smart00775 LNS2 LNS2 domain. T 80.3 3.2 7E-05 41.9 5.5 30 701-730 28-58 (157)
130 PRK13582 thrH phosphoserine ph 79.9 2.5 5.5E-05 42.7 4.7 49 698-747 66-114 (205)
131 PHA02597 30.2 hypothetical pro 79.5 1.5 3.3E-05 44.3 3.0 95 698-800 72-171 (197)
132 KOG3109 Haloacid dehalogenase- 79.4 2.3 5.1E-05 46.2 4.4 83 699-789 99-191 (244)
133 TIGR01482 SPP-subfamily Sucros 79.1 3.9 8.5E-05 41.9 5.8 32 706-737 21-53 (225)
134 COG0637 Predicted phosphatase/ 79.1 1.6 3.4E-05 46.1 3.0 84 699-787 85-170 (221)
135 PRK15126 thiamin pyrimidine py 78.9 4.2 9.2E-05 43.4 6.2 57 647-740 3-60 (272)
136 PRK09552 mtnX 2-hydroxy-3-keto 78.6 2.5 5.5E-05 43.9 4.3 38 699-736 73-111 (219)
137 TIGR01488 HAD-SF-IB Haloacid D 78.6 4 8.6E-05 40.1 5.4 49 699-748 72-121 (177)
138 PLN02645 phosphoglycolate phos 78.5 3.4 7.4E-05 45.8 5.5 54 646-737 28-82 (311)
139 TIGR01486 HAD-SF-IIB-MPGP mann 78.5 4.6 9.9E-05 42.9 6.2 34 705-738 21-55 (256)
140 PRK06698 bifunctional 5'-methy 77.8 3.1 6.7E-05 48.4 5.2 83 699-788 329-412 (459)
141 PRK10976 putative hydrolase; P 77.7 5.1 0.00011 42.4 6.3 56 647-739 3-59 (266)
142 TIGR01458 HAD-SF-IIA-hyp3 HAD- 77.1 4.3 9.2E-05 43.8 5.6 55 648-736 3-58 (257)
143 TIGR01452 PGP_euk phosphoglyco 76.6 4.6 9.9E-05 43.9 5.7 24 702-725 20-44 (279)
144 TIGR01990 bPGM beta-phosphoglu 76.5 2.5 5.5E-05 41.7 3.4 82 699-787 86-169 (185)
145 TIGR01680 Veg_Stor_Prot vegeta 76.3 9.4 0.0002 42.7 8.0 50 702-751 147-197 (275)
146 PLN02954 phosphoserine phospha 75.0 6.4 0.00014 40.5 6.0 50 699-748 83-134 (224)
147 PLN02811 hydrolase 74.6 2.8 6.1E-05 43.5 3.3 86 699-789 77-170 (220)
148 COG0241 HisB Histidinol phosph 73.8 11 0.00023 39.9 7.3 108 646-786 5-132 (181)
149 TIGR01457 HAD-SF-IIA-hyp2 HAD- 73.6 6.1 0.00013 42.4 5.6 14 648-661 3-16 (249)
150 KOG0966 ATP-dependent DNA liga 73.5 12 0.00027 46.9 8.7 62 896-957 808-881 (881)
151 COG4502 5'(3')-deoxyribonucleo 73.5 2.1 4.4E-05 44.0 1.9 30 699-728 67-96 (180)
152 PRK09484 3-deoxy-D-manno-octul 72.8 9.6 0.00021 39.0 6.6 60 714-787 63-123 (183)
153 TIGR01493 HAD-SF-IA-v2 Haloaci 72.7 1.3 2.8E-05 43.7 0.3 77 699-786 89-166 (175)
154 PRK10187 trehalose-6-phosphate 72.5 5 0.00011 43.7 4.7 60 645-736 13-74 (266)
155 PF09419 PGP_phosphatase: Mito 71.6 6.8 0.00015 40.8 5.2 60 642-737 37-106 (168)
156 PLN02919 haloacid dehalogenase 70.8 5.2 0.00011 51.8 5.1 83 701-787 162-246 (1057)
157 COG3882 FkbH Predicted enzyme 70.6 2.3 5E-05 50.6 1.8 117 641-791 217-342 (574)
158 PLN03017 trehalose-phosphatase 69.7 7.5 0.00016 45.0 5.5 64 639-734 104-167 (366)
159 COG0647 NagD Predicted sugar p 69.5 7.3 0.00016 43.3 5.2 55 644-736 6-61 (269)
160 PTZ00174 phosphomannomutase; P 68.8 10 0.00022 40.5 6.0 17 645-661 4-20 (247)
161 TIGR01460 HAD-SF-IIA Haloacid 67.9 6.8 0.00015 41.7 4.4 33 703-735 17-54 (236)
162 PLN02423 phosphomannomutase 67.4 9.9 0.00021 40.9 5.6 18 644-661 5-22 (245)
163 COG4359 Uncharacterized conser 66.8 10 0.00023 40.6 5.4 51 699-749 72-123 (220)
164 TIGR01485 SPP_plant-cyano sucr 65.7 10 0.00023 40.1 5.3 15 646-660 1-15 (249)
165 PRK12702 mannosyl-3-phosphogly 65.6 14 0.00031 41.8 6.6 35 705-739 23-58 (302)
166 TIGR00685 T6PP trehalose-phosp 63.9 5.1 0.00011 42.6 2.6 63 645-740 2-64 (244)
167 PLN02887 hydrolase family prot 63.6 12 0.00027 45.6 6.0 61 642-739 304-365 (580)
168 TIGR01490 HAD-SF-IB-hyp1 HAD-s 63.1 11 0.00023 38.2 4.6 49 699-748 86-135 (202)
169 KOG3548 DNA damage checkpoint 61.9 6.8 0.00015 49.7 3.5 99 854-952 1044-1159(1176)
170 PLN03243 haloacid dehalogenase 59.3 7.5 0.00016 42.3 2.9 24 637-661 16-39 (260)
171 PRK14502 bifunctional mannosyl 58.8 19 0.00041 44.9 6.5 59 644-739 414-473 (694)
172 PLN02151 trehalose-phosphatase 58.2 18 0.00038 41.9 5.7 63 639-733 91-153 (354)
173 TIGR01548 HAD-SF-IA-hyp1 haloa 57.2 5.8 0.00012 40.3 1.6 14 648-661 2-15 (197)
174 PRK10725 fructose-1-P/6-phosph 55.8 6.7 0.00014 39.0 1.7 43 887-937 142-184 (188)
175 PHA02597 30.2 hypothetical pro 54.9 7 0.00015 39.6 1.7 43 891-943 134-178 (197)
176 TIGR02244 HAD-IG-Ncltidse HAD 54.7 13 0.00029 42.6 4.0 42 696-737 180-223 (343)
177 PRK11587 putative phosphatase; 53.2 7.2 0.00016 40.4 1.5 15 647-661 4-18 (218)
178 COG0546 Gph Predicted phosphat 53.0 26 0.00057 36.7 5.6 86 699-789 88-175 (220)
179 TIGR01993 Pyr-5-nucltdase pyri 52.7 7.1 0.00015 39.1 1.4 14 648-661 2-15 (184)
180 PRK11590 hypothetical protein; 51.4 8.7 0.00019 40.0 1.8 39 699-737 94-134 (211)
181 TIGR02253 CTE7 HAD superfamily 50.8 8.5 0.00018 39.3 1.6 15 647-661 3-17 (221)
182 COG1877 OtsB Trehalose-6-phosp 50.6 42 0.00091 37.4 6.9 64 639-734 11-76 (266)
183 PLN02580 trehalose-phosphatase 50.6 25 0.00054 41.1 5.4 63 640-734 113-175 (384)
184 TIGR03351 PhnX-like phosphonat 50.4 9.4 0.0002 39.2 1.8 15 647-661 2-16 (220)
185 PRK13288 pyrophosphatase PpaX; 50.0 8.9 0.00019 39.3 1.6 17 646-662 3-19 (214)
186 COG0560 SerB Phosphoserine pho 49.4 29 0.00063 36.9 5.3 50 698-748 75-125 (212)
187 TIGR02252 DREG-2 REG-2-like, H 48.6 10 0.00022 38.4 1.8 14 648-661 2-15 (203)
188 PRK13223 phosphoglycolate phos 47.3 9.6 0.00021 41.4 1.4 16 646-661 13-28 (272)
189 TIGR02009 PGMB-YQAB-SF beta-ph 46.5 9.8 0.00021 37.6 1.2 15 647-661 2-16 (185)
190 PF06941 NT5C: 5' nucleotidase 45.9 12 0.00027 38.3 1.9 81 699-799 72-158 (191)
191 PRK13226 phosphoglycolate phos 45.7 10 0.00022 39.8 1.3 15 647-661 13-27 (229)
192 PRK13478 phosphonoacetaldehyde 44.4 13 0.00027 40.0 1.7 15 647-661 5-19 (267)
193 PF13419 HAD_2: Haloacid dehal 44.1 11 0.00025 35.7 1.2 13 649-661 1-13 (176)
194 TIGR01990 bPGM beta-phosphoglu 43.7 11 0.00023 37.3 1.0 14 648-661 1-14 (185)
195 TIGR01454 AHBA_synth_RP 3-amin 43.6 9.1 0.0002 39.0 0.5 13 649-661 1-13 (205)
196 TIGR01422 phosphonatase phosph 43.6 14 0.00029 39.2 1.8 15 647-661 3-17 (253)
197 PLN02770 haloacid dehalogenase 43.5 11 0.00025 40.1 1.2 15 647-661 23-37 (248)
198 PRK11590 hypothetical protein; 42.4 33 0.00072 35.7 4.4 18 644-661 4-21 (211)
199 PRK10748 flavin mononucleotide 42.2 12 0.00026 39.5 1.2 83 699-791 112-197 (238)
200 PF00702 Hydrolase: haloacid d 42.1 68 0.0015 32.1 6.4 44 697-740 124-168 (215)
201 COG1105 FruK Fructose-1-phosph 41.9 54 0.0012 37.5 6.2 57 854-910 112-168 (310)
202 PF13701 DDE_Tnp_1_4: Transpos 41.5 69 0.0015 38.0 7.3 126 603-743 102-244 (448)
203 TIGR01509 HAD-SF-IA-v3 haloaci 41.4 13 0.00028 36.4 1.2 14 648-661 1-14 (183)
204 COG0546 Gph Predicted phosphat 41.1 16 0.00034 38.4 1.8 18 645-662 3-20 (220)
205 TIGR01428 HAD_type_II 2-haloal 40.6 14 0.0003 37.4 1.3 14 648-661 3-16 (198)
206 TIGR01449 PGP_bact 2-phosphogl 40.3 11 0.00024 38.2 0.5 13 649-661 1-13 (213)
207 PRK13225 phosphoglycolate phos 39.9 14 0.00029 40.7 1.2 16 646-661 62-77 (273)
208 TIGR02254 YjjG/YfnB HAD superf 39.9 15 0.00031 37.5 1.3 46 887-940 152-199 (224)
209 TIGR01493 HAD-SF-IA-v2 Haloaci 39.4 14 0.0003 36.5 1.0 13 649-661 2-14 (175)
210 TIGR00338 serB phosphoserine p 39.4 17 0.00036 37.4 1.6 17 645-661 13-29 (219)
211 TIGR01511 ATPase-IB1_Cu copper 39.3 52 0.0011 39.8 5.9 41 699-739 404-445 (562)
212 TIGR02247 HAD-1A3-hyp Epoxide 39.2 18 0.00039 36.9 1.9 14 648-661 4-17 (211)
213 KOG3120 Predicted haloacid deh 39.0 51 0.0011 36.5 5.2 50 699-750 83-134 (256)
214 PRK10748 flavin mononucleotide 38.9 24 0.00051 37.4 2.7 15 647-661 11-25 (238)
215 PRK10826 2-deoxyglucose-6-phos 38.2 18 0.00038 37.5 1.6 17 645-661 6-22 (222)
216 PRK13222 phosphoglycolate phos 38.1 16 0.00035 37.3 1.3 15 647-661 7-21 (226)
217 PLN02382 probable sucrose-phos 38.0 16 0.00035 42.5 1.5 21 640-660 3-23 (413)
218 PF12710 HAD: haloacid dehalog 38.0 29 0.00063 34.3 3.0 47 701-747 86-138 (192)
219 TIGR01491 HAD-SF-IB-PSPlk HAD- 37.5 18 0.0004 36.1 1.6 15 647-661 5-19 (201)
220 PRK09449 dUMP phosphatase; Pro 36.5 17 0.00036 37.5 1.1 47 887-939 150-196 (224)
221 TIGR01545 YfhB_g-proteo haloac 36.4 45 0.00097 35.2 4.3 37 699-735 93-131 (210)
222 PLN02779 haloacid dehalogenase 36.3 21 0.00045 39.3 1.9 17 645-661 39-55 (286)
223 COG3769 Predicted hydrolase (H 36.1 91 0.002 34.7 6.5 36 708-743 31-67 (274)
224 PRK14501 putative bifunctional 36.0 65 0.0014 40.1 6.2 61 643-735 489-551 (726)
225 PRK14988 GMP/IMP nucleotidase; 35.5 20 0.00043 37.8 1.5 16 646-661 10-25 (224)
226 PF05116 S6PP: Sucrose-6F-phos 34.9 48 0.001 35.8 4.3 31 705-735 24-55 (247)
227 PRK10563 6-phosphogluconate ph 32.6 23 0.0005 36.5 1.4 16 646-661 4-19 (221)
228 TIGR02726 phenyl_P_delta pheny 31.8 2.1E+02 0.0046 29.6 8.2 59 714-786 49-108 (169)
229 PRK13582 thrH phosphoserine ph 31.0 26 0.00057 35.5 1.5 12 648-659 3-14 (205)
230 PLN02954 phosphoserine phospha 27.6 31 0.00067 35.5 1.3 18 645-662 11-28 (224)
231 COG0637 Predicted phosphatase/ 27.6 30 0.00065 36.6 1.3 15 647-661 3-17 (221)
232 PRK06698 bifunctional 5'-methy 27.2 28 0.0006 40.7 1.0 16 647-662 242-257 (459)
233 PF05822 UMPH-1: Pyrimidine 5' 25.4 94 0.002 34.6 4.5 40 697-736 87-127 (246)
234 PF08235 LNS2: LNS2 (Lipin/Ned 25.2 1.1E+02 0.0025 31.8 4.9 64 648-737 1-65 (157)
235 TIGR02471 sucr_syn_bact_C sucr 24.9 33 0.00072 36.0 1.0 13 649-661 2-14 (236)
236 TIGR02137 HSK-PSP phosphoserin 24.9 35 0.00076 35.9 1.2 13 648-660 3-15 (203)
237 PLN02575 haloacid dehalogenase 24.4 43 0.00093 39.1 1.9 19 643-661 128-146 (381)
238 COG1011 Predicted hydrolase (H 24.3 42 0.00091 34.3 1.6 16 646-661 4-19 (229)
239 PF06888 Put_Phosphatase: Puta 24.2 1.1E+02 0.0024 33.5 4.8 50 698-749 69-121 (234)
240 TIGR01525 ATPase-IB_hvy heavy 23.3 1E+02 0.0022 37.1 4.8 45 699-744 383-429 (556)
241 PRK09552 mtnX 2-hydroxy-3-keto 23.2 42 0.00091 35.0 1.4 16 646-661 3-18 (219)
242 COG0560 SerB Phosphoserine pho 22.4 44 0.00096 35.6 1.4 17 644-660 3-19 (212)
243 cd02514 GT13_GLCNAC-TI GT13_GL 21.3 88 0.0019 36.0 3.5 40 697-736 6-52 (334)
244 PLN02940 riboflavin kinase 21.2 44 0.00096 38.5 1.2 16 647-662 12-27 (382)
245 PRK09456 ?-D-glucose-1-phospha 20.6 53 0.0011 33.6 1.4 47 887-941 141-187 (199)
No 1
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=100.00 E-value=4.8e-48 Score=445.07 Aligned_cols=336 Identities=36% Similarity=0.536 Sum_probs=272.8
Q ss_pred cCCcchhccCCChhHHHHHhHHHHhhhHHHhhhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcce
Q 002143 609 WGDVEHLFEGYDDQQKAAIQKERTRRLEEQKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRH 688 (960)
Q Consensus 609 ~~~f~~L~~g~~~~q~~~i~ke~akrL~~q~~lls~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~ 688 (960)
..-|.++..+.+..+.... ..+.+..+..++..++|+||+|||+||+|+.....+.... .+...+... ...+..
T Consensus 112 ~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~L~lv~Dld~tllh~~~~~~l~e~~--~~l~~~~~~-~~sn~d 185 (635)
T KOG0323|consen 112 GRSFDYLVKGLQLSNEMVA---FTKTLTTQFSSLNRKKLHLVLDLDHTLLHTILKSDLSETE--KYLKEEAES-VESNKD 185 (635)
T ss_pred ccchhcccchhhhhhhhhh---hhhHHHHHHHHHhhhcceeehhhhhHHHHhhccchhhhhh--hhccccccc-cccccc
Confidence 4556777888776666553 5677777788888888999999999999998644333211 111111110 011223
Q ss_pred eEeec----cceEEEeeccCHHHHHHHhhcceEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCC
Q 002143 689 LFRFP----HMGMWTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVP 764 (960)
Q Consensus 689 ~F~l~----~~~~yVkLRPgL~EFLeeLSk~YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~ 764 (960)
.|+++ ...||||+||++.+||++++++|||||||+|++.||..|+++|||+|.||++|||+|++... .
T Consensus 186 l~~~~~~~~~~~~~vKlRP~~~efL~~~sklfemhVyTmg~R~YA~~i~~liDP~~~lF~dRIisrde~~~--------~ 257 (635)
T KOG0323|consen 186 LFRFNPLGHDTEYLVKLRPFVHEFLKEANKLFEMHVYTMGTRDYALEIAKLIDPEGKYFGDRIISRDESPF--------F 257 (635)
T ss_pred ceeecccCCCceEEEEeCccHHHHHHHHHhhceeEEEeccchHHHHHHHHHhCCCCccccceEEEecCCCc--------c
Confidence 44443 24689999999999999999999999999999999999999999999999999999997421 3
Q ss_pred ccccCCcccCCC-CcEEEEcCCCCccccCccCcccccceecccCcccccCC-----------------------------
Q 002143 765 KSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRRQFGL----------------------------- 814 (960)
Q Consensus 765 yiKDLsrVLGrd-s~VVIVDDsp~vw~~qpdN~I~IkpY~yF~~s~~q~g~----------------------------- 814 (960)
..+||...+.+. ++||||||+.+||.+++.|+|.|.+|.||....+....
T Consensus 258 kt~dL~~~~p~g~smvvIIDDr~dVW~~~~~nLI~i~~y~yF~~~gd~nap~~~~~~~~~~~~~~~~~~k~~~~s~~~~~ 337 (635)
T KOG0323|consen 258 KTLDLVLLFPCGDSMVVIIDDRSDVWPDHKRNLIQIAPYPYFSGQGDINAPPPLHVLRNVACSVRGAFFKEFDPSLKSRI 337 (635)
T ss_pred cccccccCCCCCCccEEEEeCccccccCCCcceEEeeeeecccCcccccCCcccccccchhcccccccccccCccccccc
Confidence 567887666666 89999999999999998899999999999987644321
Q ss_pred --------------------------------------------CCCCcccccccCcccchhhHHHHHHHHHHHhhcccc
Q 002143 815 --------------------------------------------LGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSH 850 (960)
Q Consensus 815 --------------------------------------------p~pSl~Ei~~Dedp~D~eLlsLL~~Le~IH~~FF~~ 850 (960)
-..++.+...|+.+.|++|.+++++|+.||..||..
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~s~~~~~~de~~~D~~L~~~~kvl~~vH~~ff~~ 417 (635)
T KOG0323|consen 338 SEVRYEDDDESNPTSYSVELSANPGPLKQDGMDEFVPEENAPEARSGSYREKKSDESDEDGELANLLKVLKPVHKGFFAK 417 (635)
T ss_pred ccccccccccccCcccccccccccCcccccccccccccccchhhcccccccccccccccchhHHHHhhhhcccchhhhhc
Confidence 123444555677888999999999999999999997
Q ss_pred C-----CCCcchhHHHHHHHHHhhhcCceeeeeecccCCCCCCCChhHHHHHHHhCCEEecccCCCccEEEecCCCCHHH
Q 002143 851 Q-----SLDDVDVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKV 925 (960)
Q Consensus 851 ~-----~L~~~DVR~ILkelRrqILkGcvIvFSG~fP~~~~npe~~~LwklAe~LGAtVssdVd~kVTHLVAss~gT~Kv 925 (960)
. .+...|||.+|+++|+++|+||.++|||++|.+.+. .+..+...+..+|+..+.+++..+||+|+.+.+|.|+
T Consensus 418 ~~~~~e~~~~~Dvr~~i~~~~~~v~~~~~~vfSg~~P~~~~~-~~s~~~~~~~~~g~vs~~~~~~~~th~i~~~~gt~k~ 496 (635)
T KOG0323|consen 418 YDEVEETLESPDVRLLIPELRTKVLKGSQIVFSGLHPTGSTD-ESADILGVAQQLGAVSAPDVSDKTTHLIAANAGTKKV 496 (635)
T ss_pred cccccccccCCChhhhhhhhhhHHhhccceeecccccCcCCc-chhhhhhhhhcccceecccccchhhhHHhhccCccee
Confidence 5 356799999999999999999999999999987532 3356666789999999999999999999999999999
Q ss_pred HHHHhCC-CcEEcHHHHHHHHHhccCCCCCCCCCC
Q 002143 926 NWALSTG-RFVVHPGWVEASALLYRRANEQDFAIK 959 (960)
Q Consensus 926 ~~Alk~G-I~IVSpdWLedC~~~wkRvDEs~YlL~ 959 (960)
.+|...+ ++||.+.|++.|+..|.+++|..|.+.
T Consensus 497 ~~a~~~~~~~Vv~~~wl~~~~e~w~~v~ek~~~l~ 531 (635)
T KOG0323|consen 497 YKAVVSGSAKVVNAAWLWRSLEKWGKVEEKLEPLD 531 (635)
T ss_pred eccccccceeEechhHHHHHHHHhcchhccccccc
Confidence 9998866 999999999999999999999999763
No 2
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=100.00 E-value=3.5e-34 Score=282.77 Aligned_cols=155 Identities=43% Similarity=0.704 Sum_probs=127.9
Q ss_pred hhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHHHHhhcceEEEE
Q 002143 641 MFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHL 720 (960)
Q Consensus 641 lls~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFLeeLSk~YEIvI 720 (960)
|+.++|++||||||||||||+....+.. .+.+...+......+....|.+....+|+++|||+.+||+++++.||++|
T Consensus 1 ~~~~~kl~LVLDLDeTLihs~~~~~~~~--~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~~yel~I 78 (156)
T TIGR02250 1 LLREKKLHLVLDLDQTLIHTTKDPTLSE--WEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASKLYEMHV 78 (156)
T ss_pred CCcCCceEEEEeCCCCcccccccCccch--hhhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHhhcEEEE
Confidence 5789999999999999999986443221 11110001111112344667777778999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCcccCCC-CcEEEEcCCCCccccCccCcccc
Q 002143 721 YTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNLIVV 799 (960)
Q Consensus 721 yTAgtreYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLGrd-s~VVIVDDsp~vw~~qpdN~I~I 799 (960)
||++.+.||++|++.|||.+.+|++|+++|++|. | .++|||++++|++ ++||||||++.+|..|++|+|+|
T Consensus 79 ~T~~~~~yA~~vl~~ldp~~~~F~~ri~~rd~~~----~----~~~KdL~~i~~~d~~~vvivDd~~~~~~~~~~N~i~i 150 (156)
T TIGR02250 79 YTMGTRAYAQAIAKLIDPDGKYFGDRIISRDESG----S----PHTKSLLRLFPADESMVVIIDDREDVWPWHKRNLIQI 150 (156)
T ss_pred EeCCcHHHHHHHHHHhCcCCCeeccEEEEeccCC----C----CccccHHHHcCCCcccEEEEeCCHHHhhcCccCEEEe
Confidence 9999999999999999999999988999999874 2 5899998789988 99999999999999999999999
Q ss_pred cceecc
Q 002143 800 ERYTYF 805 (960)
Q Consensus 800 kpY~yF 805 (960)
+||.||
T Consensus 151 ~~~~~f 156 (156)
T TIGR02250 151 EPYNYF 156 (156)
T ss_pred CCcccC
Confidence 999997
No 3
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=100.00 E-value=2.1e-34 Score=305.44 Aligned_cols=172 Identities=31% Similarity=0.423 Sum_probs=144.5
Q ss_pred hhhcCCCeEEEEeCCCceeeccc-CCCCCCchhhhhhhhhccccCCCcceeEeec--cceEEEeeccCHHHHHHHhhcce
Q 002143 640 KMFSARKLCLVLDLDHTLLNSAK-FHEVDPVHDEILRKKEEQDREKPHRHLFRFP--HMGMWTKLRPGIWTFLERASKLF 716 (960)
Q Consensus 640 ~lls~kKLTLVLDLDETLVHSs~-~~eldP~~~eil~~~ee~D~~~P~~~~F~l~--~~~~yVkLRPgL~EFLeeLSk~Y 716 (960)
++...+|+||||||||||||++. ++...+ .+.. ..+.++ ...+||.+|||+++||+.++++|
T Consensus 83 ~~~~~~kk~lVLDLDeTLvHss~~~~~~~~-~d~~--------------~~v~~~~~~~~~yV~kRP~vdeFL~~~s~~~ 147 (262)
T KOG1605|consen 83 RLATVGRKTLVLDLDETLVHSSLNLKPIVN-ADFT--------------VPVEIDGHIHQVYVRKRPHVDEFLSRVSKWY 147 (262)
T ss_pred ccccCCCceEEEeCCCcccccccccCCCCC-ccee--------------eeeeeCCcceEEEEEcCCCHHHHHHHhHHHH
Confidence 44578999999999999999984 221111 0111 112222 35789999999999999999999
Q ss_pred EEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCcccCCC-CcEEEEcCCCCccccCccC
Q 002143 717 EMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLN 795 (960)
Q Consensus 717 EIvIyTAgtreYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLGrd-s~VVIVDDsp~vw~~qpdN 795 (960)
|++||||+.+.||++|+++|||.+.+|.+|+| |++|+ ..+| .|+|||+ ++|++ ++||||||+|.+|.+||+|
T Consensus 148 e~v~FTAs~~~Ya~~v~D~LD~~~~i~~~Rly-R~~C~-~~~g----~yvKdls-~~~~dL~~viIiDNsP~sy~~~p~N 220 (262)
T KOG1605|consen 148 ELVLFTASLEVYADPLLDILDPDRKIISHRLY-RDSCT-LKDG----NYVKDLS-VLGRDLSKVIIVDNSPQSYRLQPEN 220 (262)
T ss_pred HHHHHHhhhHHHHHHHHHHccCCCCeeeeeec-ccceE-eECC----cEEEEcc-eeccCcccEEEEcCChHHhccCccC
Confidence 99999999999999999999998889999987 77775 4666 6999998 78999 8999999999999999999
Q ss_pred cccccceecccCcccccCCCCCCcccccccCcccchhhHHHHHHHHHHHhhccccCCCCcchhHHHHHH
Q 002143 796 LIVVERYTYFPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAA 864 (960)
Q Consensus 796 ~I~IkpY~yF~~s~~q~g~p~pSl~Ei~~Dedp~D~eLlsLL~~Le~IH~~FF~~~~L~~~DVR~ILke 864 (960)
+|+|++|. .++.|.+|++|+|||+.|.. ..|||.+|+.
T Consensus 221 gIpI~sw~----------------------~d~~D~eLL~LlpfLe~L~~---------~~Dvr~~l~~ 258 (262)
T KOG1605|consen 221 GIPIKSWF----------------------DDPTDTELLKLLPFLEALAF---------VDDVRPILAR 258 (262)
T ss_pred CCcccccc----------------------cCCChHHHHHHHHHHHHhcc---------cccHHHHHHH
Confidence 99999997 26889999999999999974 5899999975
No 4
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=99.97 E-value=1.4e-30 Score=257.36 Aligned_cols=158 Identities=29% Similarity=0.346 Sum_probs=128.4
Q ss_pred CeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHHHHhhcceEEEEEcCCc
Q 002143 646 KLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMGN 725 (960)
Q Consensus 646 KLTLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFLeeLSk~YEIvIyTAgt 725 (960)
|++||||||||||||+.. +... ..+ ......+......+||++|||+.|||++|+++|||+|||++.
T Consensus 1 k~~lvlDLDeTLi~~~~~----~~~~-------~~~--~~~~~~~~~~~~~~~v~~RPgl~eFL~~l~~~yei~I~Ts~~ 67 (162)
T TIGR02251 1 KKTLVLDLDETLVHSTFK----MPKV-------DAD--FKVPVLIDGKIIPVYVFKRPHVDEFLERVSKWYELVIFTASL 67 (162)
T ss_pred CcEEEEcCCCCcCCCCCC----CCCC-------CCc--eEEEEEecCcEEEEEEEECCCHHHHHHHHHhcCEEEEEcCCc
Confidence 689999999999999742 2100 000 000011111245799999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCcccCCC-CcEEEEcCCCCccccCccCcccccceec
Q 002143 726 KLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNLIVVERYTY 804 (960)
Q Consensus 726 reYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLGrd-s~VVIVDDsp~vw~~qpdN~I~IkpY~y 804 (960)
+.||++|++.|||.+.+|.++++ |++|.. ..| .+.|||+ .+|++ +++|||||++..|..++.|+|+|.+|.+
T Consensus 68 ~~yA~~il~~ldp~~~~f~~~l~-r~~~~~-~~~----~~~K~L~-~l~~~~~~vIiVDD~~~~~~~~~~NgI~i~~f~~ 140 (162)
T TIGR02251 68 EEYADPVLDILDRGGKVISRRLY-RESCVF-TNG----KYVKDLS-LVGKDLSKVIIIDNSPYSYSLQPDNAIPIKSWFG 140 (162)
T ss_pred HHHHHHHHHHHCcCCCEEeEEEE-ccccEE-eCC----CEEeEch-hcCCChhhEEEEeCChhhhccCccCEeecCCCCC
Confidence 99999999999999889998765 777743 233 4899999 58998 9999999999999999999999999973
Q ss_pred ccCcccccCCCCCCcccccccCcccchhhHHHHHHHHHHHh
Q 002143 805 FPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHK 845 (960)
Q Consensus 805 F~~s~~q~g~p~pSl~Ei~~Dedp~D~eLlsLL~~Le~IH~ 845 (960)
+.+|.+|..|+++|+.|+.
T Consensus 141 ----------------------~~~D~~L~~l~~~L~~l~~ 159 (162)
T TIGR02251 141 ----------------------DPNDTELLNLIPFLEGLRF 159 (162)
T ss_pred ----------------------CCCHHHHHHHHHHHHHHhc
Confidence 5789999999999999985
No 5
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=99.96 E-value=4.4e-30 Score=248.71 Aligned_cols=157 Identities=39% Similarity=0.512 Sum_probs=114.1
Q ss_pred eEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHHHHhhcceEEEEEcCCcH
Q 002143 647 LCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMGNK 726 (960)
Q Consensus 647 LTLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFLeeLSk~YEIvIyTAgtr 726 (960)
++|||||||||||+...... +. + ........+++|++|||+++||++++++|||+|||++.+
T Consensus 1 k~LVlDLD~TLv~~~~~~~~-~~-----------~------~~~~~~~~~~~v~~RP~l~~FL~~l~~~~ev~i~T~~~~ 62 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPL-PY-----------D------FKIIDQRGGYYVKLRPGLDEFLEELSKHYEVVIWTSASE 62 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCT-T------------S------EEEETEEEEEEEEE-TTHHHHHHHHHHHCEEEEE-SS-H
T ss_pred CEEEEeCCCcEEEEeecCCC-Cc-----------c------cceeccccceeEeeCchHHHHHHHHHHhceEEEEEeehh
Confidence 68999999999999853211 00 0 000012356899999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCcccCCC-CcEEEEcCCCCccccCccCcccccceecc
Q 002143 727 LYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNLIVVERYTYF 805 (960)
Q Consensus 727 eYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLGrd-s~VVIVDDsp~vw~~qpdN~I~IkpY~yF 805 (960)
.||++|++.|||++.+|.+++ +|++|.. ..| .++|||+ .+|++ +++|||||++.+|..++.|+|+|++|..
T Consensus 63 ~ya~~v~~~ldp~~~~~~~~~-~r~~~~~-~~~----~~~KdL~-~l~~~~~~vvivDD~~~~~~~~~~N~i~v~~f~~- 134 (159)
T PF03031_consen 63 EYAEPVLDALDPNGKLFSRRL-YRDDCTF-DKG----SYIKDLS-KLGRDLDNVVIVDDSPRKWALQPDNGIPVPPFFG- 134 (159)
T ss_dssp HHHHHHHHHHTTTTSSEEEEE-EGGGSEE-ETT----EEE--GG-GSSS-GGGEEEEES-GGGGTTSGGGEEE----SS-
T ss_pred hhhhHHHHhhhhhcccccccc-ccccccc-ccc----ccccchH-HHhhccccEEEEeCCHHHeeccCCceEEeccccC-
Confidence 999999999999988998765 5777742 222 4589999 56887 9999999999999999999999999862
Q ss_pred cCcccccCCCCCCcccccccCc-ccchhhHHHHHHHHHHHhhccccCCCCcchhH
Q 002143 806 PCSRRQFGLLGPSLLEIDHDER-SEDGTLASSLGVIERLHKIFFSHQSLDDVDVR 859 (960)
Q Consensus 806 ~~s~~q~g~p~pSl~Ei~~Ded-p~D~eLlsLL~~Le~IH~~FF~~~~L~~~DVR 859 (960)
+ ++|.+|..|+++|+.|+. .+|||
T Consensus 135 ---------------------~~~~D~~L~~l~~~L~~l~~---------~~Dvr 159 (159)
T PF03031_consen 135 ---------------------DTPNDRELLRLLPFLEELAK---------EDDVR 159 (159)
T ss_dssp ---------------------CHTT--HHHHHHHHHHHHHT---------HS-CH
T ss_pred ---------------------CCcchhHHHHHHHHHHHhCc---------ccCCC
Confidence 3 689999999999999985 57887
No 6
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=99.95 E-value=8.9e-28 Score=245.89 Aligned_cols=163 Identities=18% Similarity=0.162 Sum_probs=128.0
Q ss_pred hhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHHHHhhcceEEEE
Q 002143 641 MFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHL 720 (960)
Q Consensus 641 lls~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFLeeLSk~YEIvI 720 (960)
....+|++|||||||||||+.. +. ...|+.+||||++||+.++++|||+|
T Consensus 16 ~~~~~kklLVLDLDeTLvh~~~-----~~-------------------------~~~~~~kRP~l~eFL~~~~~~feIvV 65 (195)
T TIGR02245 16 PPREGKKLLVLDIDYTLFDHRS-----PA-------------------------ETGEELMRPYLHEFLTSAYEDYDIVI 65 (195)
T ss_pred CCCCCCcEEEEeCCCceEcccc-----cC-------------------------CCceEEeCCCHHHHHHHHHhCCEEEE
Confidence 3457899999999999999742 10 12478899999999999999999999
Q ss_pred EcCCcHHHHHHHHHHhcCCCc-eeeeeeeecCCCCCC-----CCCCCCCCccccCCcc---cCC--C-CcEEEEcCCCCc
Q 002143 721 YTMGNKLYATEMAKVLDPKGV-LFAGRVISRGDDGDP-----FDGDERVPKSKDLEGV---LGM--E-SAVVIIDDSVRV 788 (960)
Q Consensus 721 yTAgtreYAd~VLdiLDP~g~-lF~~RIySRddc~~~-----~dGder~~yiKDLsrV---LGr--d-s~VVIVDDsp~v 788 (960)
|||+.+.||+.+++.|++.+. .+..+++ +++|+.. ..| ..++|||+.+ +|+ + +++|||||++.+
T Consensus 66 wTAa~~~ya~~~l~~l~~~~~~~~~i~~~-ld~~~~~~~~~~~~g---~~~vKdL~~lw~~l~~~~~~~ntiiVDd~p~~ 141 (195)
T TIGR02245 66 WSATSMKWIEIKMTELGVLTNPNYKITFL-LDSTAMITVHTPRRG---KFDVKPLGVIWALLPEFYSMKNTIMFDDLRRN 141 (195)
T ss_pred EecCCHHHHHHHHHHhcccCCccceEEEE-eccccceeeEeeccC---cEEEeecHHhhhhcccCCCcccEEEEeCCHHH
Confidence 999999999999999976432 2333333 5666321 122 1359999965 233 4 799999999999
Q ss_pred cccCccCcccccceecccCcccccCCCCCCcccccccCcccchhhHHHHHHHHHHHhhccccCCCCcchhHHHHHH
Q 002143 789 WPHNKLNLIVVERYTYFPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAA 864 (960)
Q Consensus 789 w~~qpdN~I~IkpY~yF~~s~~q~g~p~pSl~Ei~~Dedp~D~eLlsLL~~Le~IH~~FF~~~~L~~~DVR~ILke 864 (960)
+..||.|+|+|++|.+- +.++++|.+|..|+++|+.|+. .+|||.++..
T Consensus 142 ~~~~P~N~i~I~~f~~~------------------~~~~~~D~eL~~L~~yL~~la~---------~~Dvr~~~~~ 190 (195)
T TIGR02245 142 FLMNPQNGLKIRPFKKA------------------HANRGTDQELLKLTQYLKTIAE---------LEDFSSLDHK 190 (195)
T ss_pred HhcCCCCccccCCcccc------------------CCCCcccHHHHHHHHHHHHHhc---------Ccccchhhhc
Confidence 99999999999999631 1136789999999999999985 7899999863
No 7
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=99.88 E-value=6.2e-23 Score=223.80 Aligned_cols=171 Identities=24% Similarity=0.407 Sum_probs=146.1
Q ss_pred HHhhhHHH-hhhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHH
Q 002143 631 RTRRLEEQ-KKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFL 709 (960)
Q Consensus 631 ~akrL~~q-~~lls~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFL 709 (960)
+++.|+.+ .......++||||||.++|||..+. + ..++.+++|||++.||
T Consensus 173 ~~~LLPdpl~pPy~Qp~yTLVleledvLVhpdws--------------------------~---~tGwRf~kRPgvD~FL 223 (393)
T KOG2832|consen 173 RAKLLPDPLPPPYEQPPYTLVLELEDVLVHPDWS--------------------------Y---KTGWRFKKRPGVDYFL 223 (393)
T ss_pred hhhhCCCCCCCcccCCCceEEEEeeeeEeccchh--------------------------h---hcCceeccCchHHHHH
Confidence 34444443 3334578999999999999998641 0 0357789999999999
Q ss_pred HHhhcceEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCcccCCC-CcEEEEcCCCCc
Q 002143 710 ERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRV 788 (960)
Q Consensus 710 eeLSk~YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLGrd-s~VVIVDDsp~v 788 (960)
.+++++|||+|||.....||.+|++.|||+| ++++|+| |+ |+.+++| +++|||+ .|+|| .+||+||-.+..
T Consensus 224 ~~~a~~yEIVi~sse~gmt~~pl~d~lDP~g-~IsYkLf-r~-~t~y~~G----~HvKdls-~LNRdl~kVivVd~d~~~ 295 (393)
T KOG2832|consen 224 GHLAKYYEIVVYSSEQGMTVFPLLDALDPKG-YISYKLF-RG-ATKYEEG----HHVKDLS-KLNRDLQKVIVVDFDANS 295 (393)
T ss_pred HhhcccceEEEEecCCccchhhhHhhcCCcc-eEEEEEe-cC-cccccCc----cchhhhh-hhccccceeEEEEccccc
Confidence 9999999999999999999999999999997 7889998 56 4566777 7999999 68999 999999999999
Q ss_pred cccCccCcccccceecccCcccccCCCCCCcccccccCcccchhhHHHHHHHHHHHhhccccCCCCcchhHHHHHHHHH
Q 002143 789 WPHNKLNLIVVERYTYFPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAAEQR 867 (960)
Q Consensus 789 w~~qpdN~I~IkpY~yF~~s~~q~g~p~pSl~Ei~~Dedp~D~eLlsLL~~Le~IH~~FF~~~~L~~~DVR~ILkelRr 867 (960)
+..||+|.|++++|. ++++|..|.+|++||+.||+ -+.+|||++|+.+.+
T Consensus 296 ~~l~P~N~l~l~~W~----------------------Gn~dDt~L~dL~~FL~~ia~-------~~~eDvR~vL~~y~~ 345 (393)
T KOG2832|consen 296 YKLQPENMLPLEPWS----------------------GNDDDTSLFDLLAFLEYIAQ-------QQVEDVRPVLQSYSQ 345 (393)
T ss_pred cccCcccccccCcCC----------------------CCcccchhhhHHHHHHHHHH-------ccHHHHHHHHHHhcc
Confidence 999999999999997 25778999999999999997 357999999987664
No 8
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.84 E-value=8.9e-21 Score=184.20 Aligned_cols=144 Identities=38% Similarity=0.512 Sum_probs=112.2
Q ss_pred CCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHHHHhhcceEEEEEcCC
Q 002143 645 RKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMG 724 (960)
Q Consensus 645 kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFLeeLSk~YEIvIyTAg 724 (960)
||++|||||||||||+..-+.. + +. ....+-...+......+++++|||+.+||++|.+.|+|+|||++
T Consensus 1 ~k~~lvldld~tl~~~~~~~~~-~----~~------~~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~~~~~l~I~Ts~ 69 (148)
T smart00577 1 KKKTLVLDLDETLVHSTHRSFK-E----WT------NRDFIVPVLIDGHPHGVYVKKRPGVDEFLKRASELFELVVFTAG 69 (148)
T ss_pred CCcEEEEeCCCCeECCCCCcCC-C----CC------ccceEEEEEeCCceEEEEEEECCCHHHHHHHHHhccEEEEEeCC
Confidence 6899999999999999631111 1 10 00111122233334578999999999999999999999999999
Q ss_pred cHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCcccCCC-CcEEEEcCCCCccccCccCccccccee
Q 002143 725 NKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNLIVVERYT 803 (960)
Q Consensus 725 treYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLGrd-s~VVIVDDsp~vw~~qpdN~I~IkpY~ 803 (960)
.+.||+.+++.||+.+.+|. +++++++|.. .++ .|.|+|+ .+|.+ +.+|+|||++..|..++.|+|.|++|.
T Consensus 70 ~~~~~~~il~~l~~~~~~f~-~i~~~~d~~~-~KP----~~~k~l~-~l~~~p~~~i~i~Ds~~~~~aa~~ngI~i~~f~ 142 (148)
T smart00577 70 LRMYADPVLDLLDPKKYFGY-RRLFRDECVF-VKG----KYVKDLS-LLGRDLSNVIIIDDSPDSWPFHPENLIPIKPWF 142 (148)
T ss_pred cHHHHHHHHHHhCcCCCEee-eEEECccccc-cCC----eEeecHH-HcCCChhcEEEEECCHHHhhcCccCEEEecCcC
Confidence 99999999999999764455 6888887643 222 3889998 57887 899999999999999999999999998
Q ss_pred ccc
Q 002143 804 YFP 806 (960)
Q Consensus 804 yF~ 806 (960)
++.
T Consensus 143 ~~~ 145 (148)
T smart00577 143 GDP 145 (148)
T ss_pred CCC
Confidence 753
No 9
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.82 E-value=2e-20 Score=207.91 Aligned_cols=181 Identities=28% Similarity=0.373 Sum_probs=144.5
Q ss_pred hhhHHHhhhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHHHHh
Q 002143 633 RRLEEQKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERA 712 (960)
Q Consensus 633 krL~~q~~lls~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFLeeL 712 (960)
..+..+..--...+.+|++|||+||+|+.... + ...++... .........+||..||++++||..+
T Consensus 199 ~~l~~~~~~~~~~~k~L~l~lde~l~~S~~~~-~-~~~df~~~------------~e~~~~~~~~~v~kRp~l~~fl~~l 264 (390)
T COG5190 199 DTLEPPVSKSTSPKKTLVLDLDETLVHSSFRY-I-TLLDFLVK------------VEISLLQHLVYVSKRPELDYFLGKL 264 (390)
T ss_pred ccccchhhcCCCCccccccCCCccceeecccc-c-cccchhhc------------cccccceeEEEEcCChHHHHHHhhh
Confidence 34445544456789999999999999998521 1 11111110 0111112578999999999999999
Q ss_pred hcceEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCcccCCC-CcEEEEcCCCCcccc
Q 002143 713 SKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPH 791 (960)
Q Consensus 713 Sk~YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLGrd-s~VVIVDDsp~vw~~ 791 (960)
+++|++++||++.+.||++|+++||+.+ .|++|+| |.+|. ...| .|+|||. .++++ ..+||||++|..|..
T Consensus 265 s~~~~l~~ft~s~~~y~~~v~d~l~~~k-~~~~~lf-r~sc~-~~~G----~~ikDis-~i~r~l~~viiId~~p~SY~~ 336 (390)
T COG5190 265 SKIHELVYFTASVKRYADPVLDILDSDK-VFSHRLF-RESCV-SYLG----VYIKDIS-KIGRSLDKVIIIDNSPASYEF 336 (390)
T ss_pred hhhEEEEEEecchhhhcchHHHhccccc-eeehhhh-cccce-eccC----chhhhHH-hhccCCCceEEeeCChhhhhh
Confidence 9999999999999999999999999998 8999988 55564 4566 5999999 67888 999999999999999
Q ss_pred CccCcccccceecccCcccccCCCCCCcccccccCcccchhhHHHHHHHHHHHhhccccCCCCcchhHHHHHH
Q 002143 792 NKLNLIVVERYTYFPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAA 864 (960)
Q Consensus 792 qpdN~I~IkpY~yF~~s~~q~g~p~pSl~Ei~~Dedp~D~eLlsLL~~Le~IH~~FF~~~~L~~~DVR~ILke 864 (960)
++.|+|+|.+|.. ++.|.+|.+++++|+.|.. -+..||+.++..
T Consensus 337 ~p~~~i~i~~W~~----------------------d~~d~el~~ll~~le~L~~-------~~~~d~~~~l~~ 380 (390)
T COG5190 337 HPENAIPIEKWIS----------------------DEHDDELLNLLPFLEDLPD-------RDLKDVSSILQS 380 (390)
T ss_pred CccceeccCcccc----------------------cccchhhhhhccccccccc-------ccchhhhhhhhh
Confidence 9999999999972 5789999999999999964 247899998853
No 10
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.54 E-value=1.4e-14 Score=161.74 Aligned_cols=274 Identities=25% Similarity=0.396 Sum_probs=187.3
Q ss_pred HhhhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHHHHhhcceE
Q 002143 638 QKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFE 717 (960)
Q Consensus 638 q~~lls~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFLeeLSk~YE 717 (960)
+..+...+++.||+|+|.|.+|+.... .+|... ... -+..........+......+++++||++..|+...++.||
T Consensus 18 ~~~l~q~~~~~l~~~~~~~~~h~~~~~-~~p~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~i~~~~e 93 (390)
T COG5190 18 MEALRQDKKLILVVDLDQTIIHTTVDP-NDPNNV-NQS--LERTLKSVNDRDPVQEKCAYYVKARPKLFPFLTKISPLYE 93 (390)
T ss_pred HHHhhcCcccccccccccceecccccC-CCCCch-hhh--hhccccchhccccccccccceeeecccccchhhhhchhcc
Confidence 344567899999999999999998532 222211 000 0000000000111122356899999999999999999999
Q ss_pred EEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCcccCCC-CcEEEEcCCCCcc---ccCc
Q 002143 718 MHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVW---PHNK 793 (960)
Q Consensus 718 IvIyTAgtreYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLGrd-s~VVIVDDsp~vw---~~qp 793 (960)
+++||+|++.||..+++++||.|.+|..|+..++.... ...|-+++++..+ ..+||+||++++| ..+
T Consensus 94 ~~~~~~~~~~~~~~~~~i~d~~g~~~~d~~~~~~~~~~--------~~~~s~~~l~p~~~n~~vi~~d~~~~~~~~d~~- 164 (390)
T COG5190 94 LHIYTMGTRAYAERIAKIIDPTGKLFNDRILSRDESGS--------LSQKSLSRLFPKDQNMVVIIDDRGDVWGVGDMN- 164 (390)
T ss_pred eeeEeeccccchhhhhhccccccccccccccccccccc--------chhhhhhhcCccccccccccccccccCCccchh-
Confidence 99999999999999999999999999999998875421 4578899888888 8999999999999 444
Q ss_pred cCcccccceecccCccc----------ccCCCC-----C----------------------Ccc--------cccccCc-
Q 002143 794 LNLIVVERYTYFPCSRR----------QFGLLG-----P----------------------SLL--------EIDHDER- 827 (960)
Q Consensus 794 dN~I~IkpY~yF~~s~~----------q~g~p~-----p----------------------Sl~--------Ei~~Ded- 827 (960)
.|++...++..+..... .....+ + |.. ...++.+
T Consensus 165 ~~~v~~~~~~~~~~~~~i~d~~~~~~~~~r~~~~~~l~~~~~~~~~~~k~L~l~lde~l~~S~~~~~~~~df~~~~e~~~ 244 (390)
T COG5190 165 SNFVAKSPFSKYESDKDIVDLPRLERKLSREAGIDTLEPPVSKSTSPKKTLVLDLDETLVHSSFRYITLLDFLVKVEISL 244 (390)
T ss_pred hhhhcccccccccccccccCcccccchhhhhcccccccchhhcCCCCccccccCCCccceeeccccccccchhhcccccc
Confidence 68888888544332210 111100 0 000 0011112
Q ss_pred -------ccchhhHHHHHHHHHHHhhccccCC--CCcchhHHHHHHHHHhhhcCceeeeeecccCCCCCCCChhHHHHHH
Q 002143 828 -------SEDGTLASSLGVIERLHKIFFSHQS--LDDVDVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAE 898 (960)
Q Consensus 828 -------p~D~eLlsLL~~Le~IH~~FF~~~~--L~~~DVR~ILkelRrqILkGcvIvFSG~fP~~~~npe~~~LwklAe 898 (960)
..|.+|..++..|.++|.-+|.... .-...|..+|...+ +|.+|.+.++++++.+. ....|.
T Consensus 245 ~~~~~~v~kRp~l~~fl~~ls~~~~l~~ft~s~~~y~~~v~d~l~~~k--~~~~~lfr~sc~~~~G~---~ikDis---- 315 (390)
T COG5190 245 LQHLVYVSKRPELDYFLGKLSKIHELVYFTASVKRYADPVLDILDSDK--VFSHRLFRESCVSYLGV---YIKDIS---- 315 (390)
T ss_pred ceeEEEEcCChHHHHHHhhhhhhEEEEEEecchhhhcchHHHhccccc--eeehhhhcccceeccCc---hhhhHH----
Confidence 2467899999999999987776432 22455888998877 99999999999877642 111222
Q ss_pred HhCCEEecccCCCccEEEecCCCCHHHHHHHhCCCcEEcHHHHHH
Q 002143 899 QFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPGWVEA 943 (960)
Q Consensus 899 ~LGAtVssdVd~kVTHLVAss~gT~Kv~~Alk~GI~IVSpdWLed 943 (960)
..| ..-.-||+|+.++.+- +....+.|+.+.|+.+
T Consensus 316 ~i~------r~l~~viiId~~p~SY----~~~p~~~i~i~~W~~d 350 (390)
T COG5190 316 KIG------RSLDKVIIIDNSPASY----EFHPENAIPIEKWISD 350 (390)
T ss_pred hhc------cCCCceEEeeCChhhh----hhCccceeccCccccc
Confidence 222 2335699999887554 5667789999999998
No 11
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=99.42 E-value=3.2e-13 Score=114.03 Aligned_cols=63 Identities=27% Similarity=0.330 Sum_probs=54.0
Q ss_pred ceeeeeecccCCCCCCCChhHHHHHHHhCCEEecccCCCccEEEecCCCCHHHHHHHhCCCcEEcHHH
Q 002143 873 CRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPGW 940 (960)
Q Consensus 873 cvIvFSG~fP~~~~npe~~~LwklAe~LGAtVssdVd~kVTHLVAss~gT~Kv~~Alk~GI~IVSpdW 940 (960)
|+|||||+.+. ++..|+++++++||.|..+++.+||||||....++||++|+++||+||+++|
T Consensus 1 ~~i~~sg~~~~-----~~~~l~~~i~~~Gg~~~~~lt~~~THLI~~~~~~~K~~~A~~~gi~vV~~~W 63 (63)
T PF12738_consen 1 VVICFSGFSGK-----ERSQLRKLIEALGGKYSKDLTKKTTHLICSSPEGKKYRKAKEWGIPVVSPDW 63 (63)
T ss_dssp -EEEEEEB-TT-----TCCHHHHHHHCTT-EEESSSSTT-SEEEEES--HHHHHHHHHCTSEEEEHHH
T ss_pred CEEEECCCCHH-----HHHHHHHHHHHCCCEEeccccCCceEEEEeCCCcHHHHHHHHCCCcEECCCC
Confidence 68999998654 4778999999999999999999999999999999999999999999999999
No 12
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=99.37 E-value=1.1e-12 Score=111.74 Aligned_cols=75 Identities=25% Similarity=0.432 Sum_probs=67.3
Q ss_pred HHhhhcCceeeeeecccCCCCCCCChhHHHHHHHhCCEEecccCCCccEEEecCC--CCHHHHHHHhCCCcEEcHHHHHH
Q 002143 866 QRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSL--GTDKVNWALSTGRFVVHPGWVEA 943 (960)
Q Consensus 866 RrqILkGcvIvFSG~fP~~~~npe~~~LwklAe~LGAtVssdVd~kVTHLVAss~--gT~Kv~~Alk~GI~IVSpdWLed 943 (960)
+..+|+||.++++++- ..++..+.++++.+||++...+++.|||||+... .+.|+..|...|++||+++||++
T Consensus 2 ~~~~F~g~~f~i~~~~-----~~~~~~l~~~i~~~GG~v~~~~~~~~thvI~~~~~~~~~k~~~~~~~~i~iV~~~Wi~~ 76 (78)
T PF00533_consen 2 KPKIFEGCTFCISGFD-----SDEREELEQLIKKHGGTVSNSFSKKTTHVIVGNPNKRTKKYKAAIANGIPIVSPDWIED 76 (78)
T ss_dssp STTTTTTEEEEESSTS-----SSHHHHHHHHHHHTTEEEESSSSTTSSEEEESSSHCCCHHHHHHHHTTSEEEETHHHHH
T ss_pred CCCCCCCEEEEEccCC-----CCCHHHHHHHHHHcCCEEEeecccCcEEEEeCCCCCccHHHHHHHHCCCeEecHHHHHH
Confidence 4578999999996542 3356789999999999999999999999999987 89999999999999999999999
Q ss_pred HH
Q 002143 944 SA 945 (960)
Q Consensus 944 C~ 945 (960)
|+
T Consensus 77 ci 78 (78)
T PF00533_consen 77 CI 78 (78)
T ss_dssp HH
T ss_pred hC
Confidence 96
No 13
>KOG3226 consensus DNA repair protein [Replication, recombination and repair]
Probab=99.32 E-value=9.6e-13 Score=144.35 Aligned_cols=88 Identities=20% Similarity=0.264 Sum_probs=84.0
Q ss_pred HHhhhcCceeeeeecccCCCCCCCChhHHHHHHHhCCEEecccCCCccEEEecCCCCHHHHHHHhCCCcEEcHHHHHHHH
Q 002143 866 QRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPGWVEASA 945 (960)
Q Consensus 866 RrqILkGcvIvFSG~fP~~~~npe~~~LwklAe~LGAtVssdVd~kVTHLVAss~gT~Kv~~Alk~GI~IVSpdWLedC~ 945 (960)
-.++|+|+++|+||| .||++..|...|..|||+|..||+..+|||||+..+|.||.+.+-+|..||+-+||.+|.
T Consensus 314 l~klL~GVV~VlSGf-----qNP~Rs~LRskAl~LGAkY~pDW~~gsThLICAF~NTPKy~QV~g~Gg~IV~keWI~~Cy 388 (508)
T KOG3226|consen 314 LSKLLEGVVFVLSGF-----QNPERSTLRSKALTLGAKYQPDWNAGSTHLICAFPNTPKYRQVEGNGGTIVSKEWITECY 388 (508)
T ss_pred HHHhhhceEEEEecc-----cCchHHHHHHHHHhhcccccCCcCCCceeEEEecCCCcchhhcccCCceEeeHHHHHHHH
Confidence 456899999999998 478999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCCCCCC
Q 002143 946 LLYRRANEQDFAI 958 (960)
Q Consensus 946 ~~wkRvDEs~YlL 958 (960)
...++++-..|+|
T Consensus 389 ~~kk~lp~rrYlm 401 (508)
T KOG3226|consen 389 AQKKLLPIRRYLM 401 (508)
T ss_pred HHHhhccHHHHHh
Confidence 9999999999987
No 14
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=99.18 E-value=5.1e-11 Score=99.20 Aligned_cols=77 Identities=22% Similarity=0.287 Sum_probs=65.0
Q ss_pred hhhcCceeeeeecccCCCCCCCChhHHHHHHHhCCEEecccCC-CccEEEecCCCCHH--HHHHHhCCCcEEcHHHHHHH
Q 002143 868 KILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDD-QVTHVVANSLGTDK--VNWALSTGRFVVHPGWVEAS 944 (960)
Q Consensus 868 qILkGcvIvFSG~fP~~~~npe~~~LwklAe~LGAtVssdVd~-kVTHLVAss~gT~K--v~~Alk~GI~IVSpdWLedC 944 (960)
.+|+||+|||+|-+ ..+....+++++..+||++...++. .+||+|+......+ +..|...+++||+++||.+|
T Consensus 1 ~~f~g~~~~~~g~~----~~~~~~~l~~~i~~~Gg~~~~~~~~~~~thvi~~~~~~~~~~~~~~~~~~~~iV~~~Wi~~~ 76 (80)
T smart00292 1 KLFKGKVFVITGKF----DKNERDELKELIEALGGKVTSSLSSKTTTHVIVGSPEGGKLELLLAIALGIPIVTEDWLLDC 76 (80)
T ss_pred CccCCeEEEEeCCC----CCccHHHHHHHHHHcCCEEecccCccceeEEEEcCCCCccHHHHHHHHcCCCCccHHHHHHH
Confidence 37999999999922 2345678999999999999999998 99999999865544 57788899999999999999
Q ss_pred HHhc
Q 002143 945 ALLY 948 (960)
Q Consensus 945 ~~~w 948 (960)
+..+
T Consensus 77 ~~~~ 80 (80)
T smart00292 77 LKAG 80 (80)
T ss_pred HHCc
Confidence 8753
No 15
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=99.18 E-value=7.5e-11 Score=96.07 Aligned_cols=71 Identities=24% Similarity=0.352 Sum_probs=62.6
Q ss_pred CceeeeeecccCCCCCCCChhHHHHHHHhCCEEecccCCCccEEEecCCCCHH-HHHHHhCCCcEEcHHHHHHHHH
Q 002143 872 GCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDK-VNWALSTGRFVVHPGWVEASAL 946 (960)
Q Consensus 872 GcvIvFSG~fP~~~~npe~~~LwklAe~LGAtVssdVd~kVTHLVAss~gT~K-v~~Alk~GI~IVSpdWLedC~~ 946 (960)
||.|+|+|..+ ..++..+.++++.+||++..+++..+||||+......+ +..|...+++||+++||.+|+.
T Consensus 1 ~~~~~i~g~~~----~~~~~~l~~~i~~~Gg~v~~~~~~~~thvI~~~~~~~~~~~~~~~~~~~iV~~~Wi~~~~~ 72 (72)
T cd00027 1 GLTFVITGDLP----SEERDELKELIEKLGGKVTSSVSKKTTHVIVGSDAGPKKLLKAIKLGIPIVTPEWLLDCLK 72 (72)
T ss_pred CCEEEEEecCC----CcCHHHHHHHHHHcCCEEeccccCCceEEEECCCCCchHHHHHHHcCCeEecHHHHHHHhC
Confidence 78999999864 23567899999999999999999999999999876665 8888999999999999999973
No 16
>PLN03122 Poly [ADP-ribose] polymerase; Provisional
Probab=98.50 E-value=1.5e-07 Score=114.12 Aligned_cols=87 Identities=20% Similarity=0.243 Sum_probs=77.2
Q ss_pred HHhhhcCceeeeeecccCCCCCCCChhHHHHHHHhCCEEecccCCCccEEEecC-----CCCHHHHHHHhCCCcEEcHHH
Q 002143 866 QRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANS-----LGTDKVNWALSTGRFVVHPGW 940 (960)
Q Consensus 866 RrqILkGcvIvFSG~fP~~~~npe~~~LwklAe~LGAtVssdVd~kVTHLVAss-----~gT~Kv~~Alk~GI~IVSpdW 940 (960)
....|.|++|||+|.++. .+..+.++++.+||+++..| .++||+|++. .++.|+.+|++.||+||+.+|
T Consensus 186 ~~kpL~G~~fviTGtl~~-----sr~elK~~Ie~~GGkvsssV-s~~T~lIvt~~ev~k~gsSKlkkAk~lgIpIVsEd~ 259 (815)
T PLN03122 186 PGKPFSGMMISLSGRLSR-----THQYWKKDIEKHGGKVANSV-EGVTCLVVSPAERERGGSSKIAEAMERGIPVVREAW 259 (815)
T ss_pred cCCCcCCcEEEEeCCCCC-----CHHHHHHHHHHcCCEEcccc-ccceEEEEcCccccccCccHHHHHHHcCCcCccHHH
Confidence 456799999999998753 35688999999999999999 7788999986 245899999999999999999
Q ss_pred HHHHHHhccCCCCCCCCC
Q 002143 941 VEASALLYRRANEQDFAI 958 (960)
Q Consensus 941 LedC~~~wkRvDEs~YlL 958 (960)
|.+|+...+.+++..|.+
T Consensus 260 L~d~i~~~k~~~~~~y~l 277 (815)
T PLN03122 260 LIDSIEKQEAQPLEAYDV 277 (815)
T ss_pred HHHHHhcCCcccchhhhh
Confidence 999999999999999986
No 17
>PLN03123 poly [ADP-ribose] polymerase; Provisional
Probab=98.42 E-value=2.9e-07 Score=113.68 Aligned_cols=89 Identities=8% Similarity=0.072 Sum_probs=78.0
Q ss_pred HHHhhhcCceeeeeecccCCCCCCCChhHHHHHHHhCCEEecccCCCccEEEecC---CCCHHHHHHHhCCCcEEcHHHH
Q 002143 865 EQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANS---LGTDKVNWALSTGRFVVHPGWV 941 (960)
Q Consensus 865 lRrqILkGcvIvFSG~fP~~~~npe~~~LwklAe~LGAtVssdVd~kVTHLVAss---~gT~Kv~~Alk~GI~IVSpdWL 941 (960)
...+.|+|++|+++|-|+. ....+.++++.+||+++..++..|||||+.. ....|+++|.+.||+||+.+||
T Consensus 389 ~~~~~l~~~~i~i~G~~~~-----~~~~~k~~Ie~~GG~~s~~v~~~~t~l~tt~e~~k~~~kv~qAk~~~ipIVsedwL 463 (981)
T PLN03123 389 SESEFLGDLKVSIVGASKE-----KVTEWKAKIEEAGGVFHATVKKDTNCLVVCGELDDEDAEMRKARRMKIPIVREDYL 463 (981)
T ss_pred ccCCCcCCeEEEEecCCCC-----cHHHHHHHHHhcCCEEeeeccCCceEEEccHHhhhcchHHHHHHhcCCCcccHHHH
Confidence 4567899999999998753 2356778899999999999999999999985 4567899999999999999999
Q ss_pred HHHHHhccCCCCCCCCC
Q 002143 942 EASALLYRRANEQDFAI 958 (960)
Q Consensus 942 edC~~~wkRvDEs~YlL 958 (960)
.+|.....++++..|.+
T Consensus 464 ~ds~~~~~~~p~~~y~~ 480 (981)
T PLN03123 464 VDCFKKKKKLPFDKYKL 480 (981)
T ss_pred HHHHhccccCcchhhhh
Confidence 99999999999998865
No 18
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair]
Probab=98.18 E-value=1.5e-06 Score=105.32 Aligned_cols=100 Identities=12% Similarity=0.097 Sum_probs=88.5
Q ss_pred chhHHHHHHHHHhhhcCceeeeeecccCCCCCCCChhHHHHHHHhCCEEecccCCCccEEEecC-CCCHHHHHHHhCCCc
Q 002143 856 VDVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANS-LGTDKVNWALSTGRF 934 (960)
Q Consensus 856 ~DVR~ILkelRrqILkGcvIvFSG~fP~~~~npe~~~LwklAe~LGAtVssdVd~kVTHLVAss-~gT~Kv~~Alk~GI~ 934 (960)
.+.++.-..++-.+|.||+||.+|+- ..+++++..++-.|||++...++..|+|++... ..|+||++|++|+++
T Consensus 90 ~~~~~l~~~~~~p~~~~~~Vc~tgl~-----~~eK~ei~~~v~k~gg~~~~~L~s~v~~~~~~~~~~~~kYe~al~wn~~ 164 (811)
T KOG1929|consen 90 RLLDPLRDTMKCPGFFGLKVCLTGLS-----GDEKSEIKILVPKHGGTLHRSLSSDVNSLKILPEVKTEKYEQALKWNIP 164 (811)
T ss_pred ccCccchhhhcCCcccceEEEecccc-----hHHHHHHHHHhhhcccEEehhhhhhhheeeeccccchHHHHHHHhhCCc
Confidence 34555667788999999999999983 346789999999999999999999998888876 566999999999999
Q ss_pred EEcHHHHHHHHHhccCCCCCCCCCCC
Q 002143 935 VVHPGWVEASALLYRRANEQDFAIKP 960 (960)
Q Consensus 935 IVSpdWLedC~~~wkRvDEs~YlL~p 960 (960)
||+.+|+++|+.....+++..|.+.|
T Consensus 165 v~~~~w~~~s~~~~~~~~~~~~e~~~ 190 (811)
T KOG1929|consen 165 VVSDDWLFDSIEKTAVLETKPYEGAP 190 (811)
T ss_pred cccHHHHhhhhccccccccccccccc
Confidence 99999999999999999999998765
No 19
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=97.85 E-value=5.6e-05 Score=91.06 Aligned_cols=74 Identities=12% Similarity=0.073 Sum_probs=65.8
Q ss_pred hhhcCceeeeeecccCCCCCCCChhHHHHHHHhCCEEecccCCCccEEEecCCCCHHHHHHHhCCCcEEcHHHHHHHH
Q 002143 868 KILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPGWVEASA 945 (960)
Q Consensus 868 qILkGcvIvFSG~fP~~~~npe~~~LwklAe~LGAtVssdVd~kVTHLVAss~gT~Kv~~Alk~GI~IVSpdWLedC~ 945 (960)
..|.|.++||||.++. ..+.++.++++++||++...|+.+++.|||....+.|+.+|.+.||+|++.+.+.+-+
T Consensus 592 ~~l~gktfV~TG~l~~----~~R~e~~~lie~~Ggkv~ssVSkktd~LV~G~~aGsKl~KA~~LGI~Ii~e~~f~~~l 665 (669)
T PRK14350 592 SFLFGKKFCITGSFNG----YSRSVLIDKLTKKGAIFNTCVTKYLDFLLVGEKAGLKLKKANNLGIKIMSLFDIKSYV 665 (669)
T ss_pred CccCCcEEEEecccCC----CCHHHHHHHHHHcCCEEeccccCCCcEEEECCCCCchHHHHHHcCCEEecHHHHHHHh
Confidence 3599999999998764 2477899999999999999999999999999877799999999999999999887643
No 20
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair]
Probab=97.84 E-value=7.4e-06 Score=99.56 Aligned_cols=98 Identities=19% Similarity=0.195 Sum_probs=86.6
Q ss_pred hhHHHHHHHHHhhhcCceeeeeecccCCCCCCCChhHHHHHHHhCCEEecccCCCccEEEecCCCCHHHHHHHhCCCcEE
Q 002143 857 DVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVV 936 (960)
Q Consensus 857 DVR~ILkelRrqILkGcvIvFSG~fP~~~~npe~~~LwklAe~LGAtVssdVd~kVTHLVAss~gT~Kv~~Alk~GI~IV 936 (960)
-+|.+....=.++|.||.|++++. +.+++.-+...+..+||.....+..+.||||+.+....|+..|.+|+++||
T Consensus 481 ~~~~vp~~~l~~~~e~~~~~~s~~-----~~~~~e~ln~~~~~~gas~~~~f~r~~~~l~~~~~k~s~~~~~~kw~ip~v 555 (811)
T KOG1929|consen 481 NLRPVPAAALSQPFENLTISNSQS-----AEAEREKLNNLANDLGASNVKTFTRKSTTLLTTSAKGSKYEIAGKWSIPIV 555 (811)
T ss_pred hcCcchhhcccccccCceEEeeec-----hHHHHHHHhHhhhhccccccceeeecccEEeccccccchhhhccccCCCcc
Confidence 467788888899999999999974 233455677789999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhccCCCCCCCCCC
Q 002143 937 HPGWVEASALLYRRANEQDFAIK 959 (960)
Q Consensus 937 SpdWLedC~~~wkRvDEs~YlL~ 959 (960)
+++||++|.++.+..++..|++.
T Consensus 556 T~~wL~e~~rq~~~~~~e~~l~~ 578 (811)
T KOG1929|consen 556 TPDWLYECVRQNKGERNEGFLNG 578 (811)
T ss_pred ChhHHHhhccccCcccceeeccc
Confidence 99999999999999999998763
No 21
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=97.78 E-value=8.7e-05 Score=89.46 Aligned_cols=73 Identities=19% Similarity=0.109 Sum_probs=65.6
Q ss_pred hcCceeeeeecccCCCCCCCChhHHHHHHHhCCEEecccCCCccEEEecCCCCHHHHHHHhCCCcEEcHHHHHHHHH
Q 002143 870 LAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPGWVEASAL 946 (960)
Q Consensus 870 LkGcvIvFSG~fP~~~~npe~~~LwklAe~LGAtVssdVd~kVTHLVAss~gT~Kv~~Alk~GI~IVSpdWLedC~~ 946 (960)
|.|.++||||.+... .+.++.++++.+||+|+..|+.+++.|||....+.|+.+|.+.||+|++.+.+.+.+.
T Consensus 591 ~~g~~~v~TG~l~~~----~R~e~~~~i~~~G~~v~~sVs~kt~~lv~G~~~gsK~~kA~~lgI~ii~E~~f~~~l~ 663 (665)
T PRK07956 591 LAGKTVVLTGTLEQL----SRDEAKEKLEALGAKVSGSVSKKTDLVVAGEAAGSKLAKAQELGIEVLDEEEFLRLLG 663 (665)
T ss_pred ccccEEEEeCCCCCC----CHHHHHHHHHHcCCEEeCcccCCCCEEEECCCCChHHHHHHHcCCeEEcHHHHHHHHh
Confidence 899999999987542 4678999999999999999999999999998767999999999999999988887654
No 22
>COG4996 Predicted phosphatase [General function prediction only]
Probab=97.74 E-value=7.1e-05 Score=74.31 Aligned_cols=135 Identities=19% Similarity=0.159 Sum_probs=89.7
Q ss_pred EEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHHHHhhc-ceEEEEEcCCcH
Q 002143 648 CLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTMGNK 726 (960)
Q Consensus 648 TLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFLeeLSk-~YEIvIyTAgtr 726 (960)
.+|||+|+||+.....+.+.|....+-.. . -.+..+.-|.+||++.+||+++.. -|-+..+|+...
T Consensus 2 ~i~~d~d~t~wdhh~iSsl~pPf~rVs~n------------~-i~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN~~ 68 (164)
T COG4996 2 AIVFDADKTLWDHHNISSLEPPFRRVSSN------------T-IEDSKGREVHLFPDVKETLKWARNSGYILGLASWNFE 68 (164)
T ss_pred cEEEeCCCcccccccchhcCCcceecCcc------------c-eecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecCch
Confidence 48999999999877666666643322100 0 012357889999999999999985 588999999999
Q ss_pred HHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCccc---CC---CCcEEEEcCCCCcccc---CccCcc
Q 002143 727 LYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVL---GM---ESAVVIIDDSVRVWPH---NKLNLI 797 (960)
Q Consensus 727 eYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVL---Gr---ds~VVIVDDsp~vw~~---qpdN~I 797 (960)
.-|-++++.||-.. ||.+-++ +-+. .++. +..+=|.++- +. ++++|.+||+.-.+.. +.+|+-
T Consensus 69 ~kA~~aLral~~~~-yFhy~Vi-ePhP---~K~~---ML~~llr~i~~er~~~ikP~~Ivy~DDR~iH~~~Iwe~~G~V~ 140 (164)
T COG4996 69 DKAIKALRALDLLQ-YFHYIVI-EPHP---YKFL---MLSQLLREINTERNQKIKPSEIVYLDDRRIHFGNIWEYLGNVK 140 (164)
T ss_pred HHHHHHHHHhchhh-hEEEEEe-cCCC---hhHH---HHHHHHHHHHHhhccccCcceEEEEecccccHHHHHHhcCCee
Confidence 99999999999986 8987555 3331 1110 1112121110 11 2789999999854432 345666
Q ss_pred ccccee
Q 002143 798 VVERYT 803 (960)
Q Consensus 798 ~IkpY~ 803 (960)
.|+.|.
T Consensus 141 ~~~~~~ 146 (164)
T COG4996 141 CLEMWK 146 (164)
T ss_pred eeEeec
Confidence 666654
No 23
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=97.73 E-value=3.9e-06 Score=99.67 Aligned_cols=251 Identities=29% Similarity=0.329 Sum_probs=146.1
Q ss_pred CCCCcccCceecccCCCcccccccccccC--CCCCCccccCCCCCCCCCCCccchhhhhccCCCCCCcccccc----cCC
Q 002143 458 SKPMDELGKVRMKPRDPRRVLHGNALQRS--GSLGPEFKTDGPSAPCTQGSKENLNFQKQLGAPEAKPVLSQS----VLQ 531 (960)
Q Consensus 458 ~~~~~~~~~~~mkprdprr~lh~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----~~~ 531 (960)
-+|..++|++++|++|++|.-+.-.-+-. .......+.-.. ...++-+..|++..-.+..++.+-.-- -..
T Consensus 377 ~~~~~~~~s~~~~~~de~~~D~~L~~~~kvl~~vH~~ff~~~~---~~~e~~~~~Dvr~~i~~~~~~v~~~~~~vfSg~~ 453 (635)
T KOG0323|consen 377 NAPEARSGSYREKKSDESDEDGELANLLKVLKPVHKGFFAKYD---EVEETLESPDVRLLIPELRTKVLKGSQIVFSGLH 453 (635)
T ss_pred cchhhcccccccccccccccchhHHHHhhhhcccchhhhhccc---cccccccCCChhhhhhhhhhHHhhccceeecccc
Confidence 34568899999999999997542222111 111111111111 112222334444444333322222211 122
Q ss_pred CchhhHHhhcccccccccccCccCCCCCCCCCCCCCCCCCCccccccccccccCCCcCCCCCCCCCCC-CCCCCCCCccC
Q 002143 532 PDITQQFTKNLKHIADFMSVSQPLTSEPMVSQNSPIQPGQIKSGADMKAVVTNHDDKQTGTGSGPEAG-PVGAHPQSAWG 610 (960)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~pq~~~~ 610 (960)
|....+++ +|++-++|+.....++- ++...-+. ...++........... +++.+++ ......+..|+
T Consensus 454 P~~~~~~~------s~~~~~~~~~g~vs~~~----~~~~~th~-i~~~~gt~k~~~a~~~-~~~~Vv~~~wl~~~~e~w~ 521 (635)
T KOG0323|consen 454 PTGSTDES------ADILGVAQQLGAVSAPD----VSDKTTHL-IAANAGTKKVYKAVVS-GSAKVVNAAWLWRSLEKWG 521 (635)
T ss_pred cCcCCcch------hhhhhhhhcccceeccc----ccchhhhH-HhhccCcceeeccccc-cceeEechhHHHHHHHHhc
Confidence 33333333 67777776655222211 11111110 0122222222222222 2244444 56677888999
Q ss_pred CcchhccCCChhHHHHHhHHHHhhhHHHhhhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeE
Q 002143 611 DVEHLFEGYDDQQKAAIQKERTRRLEEQKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLF 690 (960)
Q Consensus 611 ~f~~L~~g~~~~q~~~i~ke~akrL~~q~~lls~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F 690 (960)
...+.+..+.+.+++.+.++.-.+...+..+.. .++.++.++|++++.+..+..++-....++...++.....++..+|
T Consensus 522 ~v~ek~~~l~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~d~~~~~~~~~l~ 600 (635)
T KOG0323|consen 522 KVEEKLEPLDDDQRAAIRRESLARLYEQEKVFP-PKLSLVAPLDNELQESGKENEVNSRTELLDETGEDVSSEPPDRHLE 600 (635)
T ss_pred chhcccccccccccchhcccchhhhhhhhcccc-hhhhccCccchhhhhccccchhcccchhhccccCcccCCCCCccch
Confidence 999999999999998888877777777777777 8999999999999988765444444344444444444455566777
Q ss_pred eeccceEEEeeccCHHHHHHHhhcceEEEEEcCCcHHHHH
Q 002143 691 RFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMGNKLYAT 730 (960)
Q Consensus 691 ~l~~~~~yVkLRPgL~EFLeeLSk~YEIvIyTAgtreYAd 730 (960)
+......+++.+ ++.....|+..-||++.+-||.
T Consensus 601 ~~~~~~~~~~~~------~~~~~~~~~~~~~~s~~~~~~~ 634 (635)
T KOG0323|consen 601 RELPSSMWIKLL------LEKASKLYELHLYTSGNKHRAE 634 (635)
T ss_pred hhccccCccccc------hhhhhhHHHhccCCcccccccC
Confidence 776778888888 8888999999999999887764
No 24
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=97.66 E-value=0.0001 Score=81.45 Aligned_cols=72 Identities=18% Similarity=0.153 Sum_probs=62.8
Q ss_pred hhcCceeeeeecccCCCCCCCChhHHHHHHHhCCEEecccCCCccEEEecCCCC--HHHHHHHhCCCcEEcHHHHHHHH
Q 002143 869 ILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGT--DKVNWALSTGRFVVHPGWVEASA 945 (960)
Q Consensus 869 ILkGcvIvFSG~fP~~~~npe~~~LwklAe~LGAtVssdVd~kVTHLVAss~gT--~Kv~~Alk~GI~IVSpdWLedC~ 945 (960)
+|.|.+|||||-+.. .+.+++++++.+||+|...|+++++.|||....+ .|.++|.+.||+|++.+=+.+-+
T Consensus 232 l~~g~~~v~TG~l~~-----~R~e~~~~~~~~G~~v~~sVs~~t~~lv~g~~~~~ssK~~kA~~~gi~ii~e~~f~~ll 305 (313)
T PRK06063 232 LVQGMRVALSAEVSR-----THEELVERILHAGLAYSDSVDRDTSLVVCNDPAPEQGKGYHARQLGVPVLDEAAFLELL 305 (313)
T ss_pred ccCCCEEEEecCCCC-----CHHHHHHHHHHcCCEecCccccCccEEEECCCCCcccHHHHHHHcCCccccHHHHHHHH
Confidence 579999999998752 4678999999999999999999999999997544 79999999999999987666544
No 25
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=97.66 E-value=0.0002 Score=86.64 Aligned_cols=74 Identities=15% Similarity=0.045 Sum_probs=65.0
Q ss_pred hhcCceeeeeecccCCCCCCCChhHHHHHHHhCCEEecccCCCccEEEecCCCC-HHHHHHHhCCCcEEcHHHHHHHHH
Q 002143 869 ILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGT-DKVNWALSTGRFVVHPGWVEASAL 946 (960)
Q Consensus 869 ILkGcvIvFSG~fP~~~~npe~~~LwklAe~LGAtVssdVd~kVTHLVAss~gT-~Kv~~Alk~GI~IVSpdWLedC~~ 946 (960)
.|.|.++||||.+... .+.++.++++.+||++...|+.+++.||+...-+ .|..+|.+.||+|++.+.+.+-+.
T Consensus 609 ~l~g~~~v~TG~l~~~----~R~~~~~~i~~~Gg~v~~sVs~kt~~Lv~G~~~g~sKl~kA~~lgi~ii~E~~f~~ll~ 683 (689)
T PRK14351 609 ALDGLTFVFTGSLSGY----TRSEAQELVEAHGGNATGSVSGNTDYLVVGENPGQSKRDDAEANDVPTLDEEEFEELLA 683 (689)
T ss_pred CCCCcEEEEccCCCCC----CHHHHHHHHHHcCCEEcCCcCCCccEEEEcCCCChhHHHHHHHCCCeEecHHHHHHHHH
Confidence 5999999999987542 4678999999999999999999999999987544 899999999999999988877554
No 26
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=97.59 E-value=9.7e-05 Score=66.61 Aligned_cols=62 Identities=24% Similarity=0.208 Sum_probs=50.1
Q ss_pred EEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHHHHhhcc-eEEEEEcCCcH
Q 002143 648 CLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FEMHLYTMGNK 726 (960)
Q Consensus 648 TLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFLeeLSk~-YEIvIyTAgtr 726 (960)
++|||+|+||+........ ...+.++|++.+||+++.+. +.++|+|++.+
T Consensus 1 ~~vfD~D~tl~~~~~~~~~-----------------------------~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~ 51 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIAE-----------------------------IEELELYPGVKEALKELKEKGIKLALATNKSR 51 (139)
T ss_pred CeEEccCCceEccCccccc-----------------------------cccCCcCcCHHHHHHHHHHCCCeEEEEeCchH
Confidence 4899999999987531000 12466899999999999986 99999999999
Q ss_pred HHHHHHHHHhcC
Q 002143 727 LYATEMAKVLDP 738 (960)
Q Consensus 727 eYAd~VLdiLDP 738 (960)
.++..+++.+.-
T Consensus 52 ~~~~~~~~~~~~ 63 (139)
T cd01427 52 REVLELLEELGL 63 (139)
T ss_pred HHHHHHHHHcCC
Confidence 999999988754
No 27
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=97.52 E-value=0.00027 Score=84.61 Aligned_cols=73 Identities=19% Similarity=0.107 Sum_probs=65.2
Q ss_pred hhhcCceeeeeecccCCCCCCCChhHHHHHHHhCCEEecccCCCccEEEecCCCCHHHHHHHhCCCcEEcHHHHHHH
Q 002143 868 KILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPGWVEAS 944 (960)
Q Consensus 868 qILkGcvIvFSG~fP~~~~npe~~~LwklAe~LGAtVssdVd~kVTHLVAss~gT~Kv~~Alk~GI~IVSpdWLedC 944 (960)
.+|.|.++||||.++.- .+.++..+++.+||+|+..|+.++..||+...-+.|+.+|.+.||+|.+.+|+.+-
T Consensus 593 ~~l~gkt~V~TGtL~~~----sR~eak~~le~lGakv~~SVSkktD~vvaG~~aGSKl~kA~eLgv~i~~E~~~~~l 665 (667)
T COG0272 593 SPLAGKTFVLTGTLEGM----SRDEAKALLEALGAKVSGSVSKKTDYVVAGENAGSKLAKAQELGVKIIDEEEFLAL 665 (667)
T ss_pred cccCCCEEEEeccCCCC----CHHHHHHHHHHcCCEEeceecccccEEEEcCCCChHHHHHHHcCCeEecHHHHHHh
Confidence 35999999999988642 46788999999999999999999999999998888999999999999999888653
No 28
>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms]
Probab=97.51 E-value=3.2e-05 Score=91.57 Aligned_cols=80 Identities=20% Similarity=0.355 Sum_probs=69.6
Q ss_pred hhcCceeeeeecccCCCCCCCChhHHHHHHHhCCEEecccCCCccEEEecCCCCHHHHHHHhCCCcEEcHHHHHHHHHhc
Q 002143 869 ILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPGWVEASALLY 948 (960)
Q Consensus 869 ILkGcvIvFSG~fP~~~~npe~~~LwklAe~LGAtVssdVd~kVTHLVAss~gT~Kv~~Alk~GI~IVSpdWLedC~~~w 948 (960)
.|+|+++||+|+.++. ..+..++..|||.|..+...++||+||+..+++|+..|+-. .+++.|+||.+| |
T Consensus 118 ~m~~vvlcfTg~rkk~------e~lv~lvh~mgg~irkd~nsktthli~n~s~gek~~~a~t~-~~~~rp~wv~~a---w 187 (850)
T KOG3524|consen 118 LMKDVVMCFTGERKKK------EELVDLVHYMGGSIRKDTNSKTTHLIANKVEGEKQSIALVG-VPTMRPDWVTEA---W 187 (850)
T ss_pred hhcCceeeeeccchhh------HHHHHHHHHhcceeEeeeccCceEEEeecccceEEEEEeec-cceechHhhhhh---h
Confidence 6899999999987642 27999999999999999999999999999999999888777 999999999999 6
Q ss_pred cCCCCCCCCC
Q 002143 949 RRANEQDFAI 958 (960)
Q Consensus 949 kRvDEs~YlL 958 (960)
++-++..|.+
T Consensus 188 ~~rn~~yfda 197 (850)
T KOG3524|consen 188 KHRNDSYFDA 197 (850)
T ss_pred cCcchhhhhh
Confidence 7766665543
No 29
>PRK06195 DNA polymerase III subunit epsilon; Validated
Probab=97.49 E-value=0.00025 Score=77.96 Aligned_cols=71 Identities=11% Similarity=0.074 Sum_probs=60.4
Q ss_pred hhcCceeeeeecccCCCCCCCChhHHHHHHHhCCEEecccCCCccEEEecC---------CCCHHHHHHHhC-----CCc
Q 002143 869 ILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANS---------LGTDKVNWALST-----GRF 934 (960)
Q Consensus 869 ILkGcvIvFSG~fP~~~~npe~~~LwklAe~LGAtVssdVd~kVTHLVAss---------~gT~Kv~~Alk~-----GI~ 934 (960)
.|.|.++||||.+... .+.+++++++.+||+|...|+.+++.||+.. ..+.|+++|.+. ||+
T Consensus 220 ~l~g~~~vfTG~l~~~----~R~~~~~~~~~~Gg~v~~sVs~~t~~lV~G~~~~~~~~~~~~~~K~~kA~~l~~~g~~i~ 295 (309)
T PRK06195 220 AFKEEVVVFTGGLASM----TRDEAMILVRRLGGTVGSSVTKKTTYLVTNTKDIEDLNREEMSNKLKKAIDLKKKGQNIK 295 (309)
T ss_pred cccCCEEEEccccCCC----CHHHHHHHHHHhCCEecCCcccCceEEEECCCcchhhcccCcChHHHHHHHHHhCCCCcE
Confidence 6999999999987532 4678999999999999999999999999984 346899999886 899
Q ss_pred EEcHHHHHH
Q 002143 935 VVHPGWVEA 943 (960)
Q Consensus 935 IVSpdWLed 943 (960)
|++.+=+++
T Consensus 296 ii~E~~f~~ 304 (309)
T PRK06195 296 FLNEEEFLQ 304 (309)
T ss_pred EecHHHHHH
Confidence 999754443
No 30
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=97.45 E-value=0.0002 Score=73.32 Aligned_cols=138 Identities=14% Similarity=0.050 Sum_probs=81.3
Q ss_pred eEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHHHHhhc-ceEEEEEcCC-
Q 002143 647 LCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTMG- 724 (960)
Q Consensus 647 LTLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFLeeLSk-~YEIvIyTAg- 724 (960)
..+|+|||.||+.....+-..+. +-..+ +. .-........-+.++||+.++|+.|.+ .+.+.|.|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-------~~-~~~~~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~ 71 (174)
T TIGR01685 3 RVIVFDLDGTLWDHYMISLLGGP---FKPVK-------QN-NSIIIDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWND 71 (174)
T ss_pred cEEEEeCCCCCcCcccccccCCC---ceecc-------CC-CCeEEeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCC
Confidence 35899999999987654311111 00000 00 000111233467899999999999974 5999999988
Q ss_pred cHHHHHHHHHHhcCC--C------ceeeeeeeecCCCCCCCCCCCCCCccccCCccc--CCC-CcEEEEcCCCCccccCc
Q 002143 725 NKLYATEMAKVLDPK--G------VLFAGRVISRGDDGDPFDGDERVPKSKDLEGVL--GME-SAVVIIDDSVRVWPHNK 793 (960)
Q Consensus 725 treYAd~VLdiLDP~--g------~lF~~RIySRddc~~~~dGder~~yiKDLsrVL--Grd-s~VVIVDDsp~vw~~qp 793 (960)
...|++.+++.++-. | .+|.. +++-++. ...... ....+.+...+ |.. +.+|+|||++.-...-.
T Consensus 72 ~~~~~~~~L~~~~l~~~~~~~~~~~~Fd~-iv~~~~~-~~~kp~--~~i~~~~~~~~~~gl~p~e~l~VgDs~~di~aA~ 147 (174)
T TIGR01685 72 VPEWAYEILGTFEITYAGKTVPMHSLFDD-RIEIYKP-NKAKQL--EMILQKVNKVDPSVLKPAQILFFDDRTDNVREVW 147 (174)
T ss_pred ChHHHHHHHHhCCcCCCCCcccHHHhcee-eeeccCC-chHHHH--HHHHHHhhhcccCCCCHHHeEEEcChhHhHHHHH
Confidence 999999999998854 2 46765 4432221 100000 00112222222 355 89999999997665444
Q ss_pred cCcccc
Q 002143 794 LNLIVV 799 (960)
Q Consensus 794 dN~I~I 799 (960)
.+++.+
T Consensus 148 ~aGi~~ 153 (174)
T TIGR01685 148 GYGVTS 153 (174)
T ss_pred HhCCEE
Confidence 455544
No 31
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=97.37 E-value=0.00013 Score=70.18 Aligned_cols=80 Identities=15% Similarity=0.059 Sum_probs=53.7
Q ss_pred eeccCHHHHHHHhhc-ceEEEEEcCC-cHHHHHHHHHHhcCC------CceeeeeeeecCCCCCCCCCCCCCCccccCCc
Q 002143 700 KLRPGIWTFLERASK-LFEMHLYTMG-NKLYATEMAKVLDPK------GVLFAGRVISRGDDGDPFDGDERVPKSKDLEG 771 (960)
Q Consensus 700 kLRPgL~EFLeeLSk-~YEIvIyTAg-treYAd~VLdiLDP~------g~lF~~RIySRddc~~~~dGder~~yiKDLsr 771 (960)
++.||+.++|+++.+ .+.++|.|++ .+.|+..+++.+.+. ..+|.. ++..++. -+ ...+.+=+.
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~~~~i~~l~~~f~~-~~~~~~~---pk---p~~~~~a~~- 100 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFEDFGIIFPLAEYFDP-LTIGYWL---PK---SPRLVEIAL- 100 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccccccchhhHhhhhh-hhhcCCC---cH---HHHHHHHHH-
Confidence 578999999999975 6999999999 999999999887631 123433 2221110 01 112333343
Q ss_pred ccC--CC-CcEEEEcCCCC
Q 002143 772 VLG--ME-SAVVIIDDSVR 787 (960)
Q Consensus 772 VLG--rd-s~VVIVDDsp~ 787 (960)
.+| .. +.+|+|||++.
T Consensus 101 ~lg~~~~p~~~l~igDs~~ 119 (128)
T TIGR01681 101 KLNGVLKPKSILFVDDRPD 119 (128)
T ss_pred HhcCCCCcceEEEECCCHh
Confidence 467 66 89999999964
No 32
>KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair]
Probab=97.35 E-value=0.00016 Score=87.96 Aligned_cols=92 Identities=17% Similarity=0.230 Sum_probs=66.8
Q ss_pred HHHHHHH-hhhcCceeeeeecccCCCCCCCChhHHHHHHHhCCEEecccCCC-cc-------------------------
Q 002143 861 ILAAEQR-KILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQ-VT------------------------- 913 (960)
Q Consensus 861 ILkelRr-qILkGcvIvFSG~fP~~~~npe~~~LwklAe~LGAtVssdVd~k-VT------------------------- 913 (960)
.+.+.+. .||.||+++|++.+-. ........+.+||.+....-.. .+
T Consensus 916 ~lEe~~gkniFd~cvF~lTsa~~s------d~~~r~s~e~~gg~vle~gl~~~Fn~p~~g~~~~lr~Ln~~q~~ks~~qa 989 (1176)
T KOG3548|consen 916 MLEEAIGKNIFDGCVFMLTSANRS------DSASRPSMEKHGGLVLEKGLMNLFNTPFKGGGIVLRQLNSFQERKSNYQA 989 (1176)
T ss_pred cchhhhCcchhcceeEEEeccccc------hhhhhhhhhccCChhhhccccccccccccCCcchHHhhhHHhhhccccce
Confidence 4444443 6999999999996432 3445566666787775433211 11
Q ss_pred EEEecC-CCCHHHHHHHhCCCcEEcHHHHHHHHHhccCCCCCCCCC
Q 002143 914 HVVANS-LGTDKVNWALSTGRFVVHPGWVEASALLYRRANEQDFAI 958 (960)
Q Consensus 914 HLVAss-~gT~Kv~~Alk~GI~IVSpdWLedC~~~wkRvDEs~YlL 958 (960)
-||+-. .+|.||..|++.||++||+.||.+|+..++.+|-.+|+|
T Consensus 990 lLIsdth~Rt~KYLeaLA~giPcVh~~fI~aC~e~nr~Vdy~~YLL 1035 (1176)
T KOG3548|consen 990 LLISDTHYRTHKYLEALARGIPCVHNTFIQACGEQNRCVDYTDYLL 1035 (1176)
T ss_pred eEeehhhhHHHHHHHHHHcCCCcccHHHHHHHHhccccccchhhcc
Confidence 233322 568899999999999999999999999999999999987
No 33
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=97.27 E-value=0.00054 Score=75.76 Aligned_cols=74 Identities=24% Similarity=0.357 Sum_probs=60.1
Q ss_pred hhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeec-cCHHHHHHHhhcc-eEE
Q 002143 641 MFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLR-PGIWTFLERASKL-FEM 718 (960)
Q Consensus 641 lls~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLR-PgL~EFLeeLSk~-YEI 718 (960)
+.-+....+|+|||+||+.... -|.+| |++.++|++|.+. +.+
T Consensus 121 ~~~~~~kvIvFDLDgTLi~~~~-----------------------------------~v~irdPgV~EaL~~LkekGikL 165 (301)
T TIGR01684 121 KVFEPPHVVVFDLDSTLITDEE-----------------------------------PVRIRDPRIYDSLTELKKRGCIL 165 (301)
T ss_pred cccccceEEEEecCCCCcCCCC-----------------------------------ccccCCHHHHHHHHHHHHCCCEE
Confidence 4456777999999999997631 13468 9999999999986 899
Q ss_pred EEEcCCcHHHHHHHHHHhcCCCceeeeeeeecC
Q 002143 719 HLYTMGNKLYATEMAKVLDPKGVLFAGRVISRG 751 (960)
Q Consensus 719 vIyTAgtreYAd~VLdiLDP~g~lF~~RIySRd 751 (960)
+|+|.+.+.++..+++.++-.+ +|. .|++.+
T Consensus 166 aIaTS~~Re~v~~~L~~lGLd~-YFd-vIIs~G 196 (301)
T TIGR01684 166 VLWSYGDRDHVVESMRKVKLDR-YFD-IIISGG 196 (301)
T ss_pred EEEECCCHHHHHHHHHHcCCCc-ccC-EEEECC
Confidence 9999999999999999998875 674 355543
No 34
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=97.25 E-value=0.00047 Score=83.15 Aligned_cols=69 Identities=16% Similarity=0.146 Sum_probs=61.0
Q ss_pred hhhcCceeeeeecccCCCCCCCChhHHHHHHHhCCEEecccCCCccEEEecCCCCHHHHHHHhCCCcEEcHHH
Q 002143 868 KILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPGW 940 (960)
Q Consensus 868 qILkGcvIvFSG~fP~~~~npe~~~LwklAe~LGAtVssdVd~kVTHLVAss~gT~Kv~~Alk~GI~IVSpdW 940 (960)
..|.|..+||||.+... .+.++.++++.+||++...|+.+++.||+....+.|+.+|.+.||+|++.+.
T Consensus 583 ~~l~gk~~v~TG~l~~~----~R~~~~~~i~~~G~~v~~sVs~kt~~lv~G~~~gsKl~kA~~lgi~ii~E~~ 651 (652)
T TIGR00575 583 SPLAGKTFVLTGTLSQM----SRDEAKELLENLGGKVASSVSKKTDYVIAGEKAGSKLAKAQELGIPIINEEE 651 (652)
T ss_pred CCccCcEEEEeccCCCC----CHHHHHHHHHHcCCEEeCCcCCCccEEEECCCCChHHHHHHHcCCcEechhh
Confidence 35999999999987642 4678999999999999999999999999998666799999999999998764
No 35
>KOG2043 consensus Signaling protein SWIFT and related BRCT domain proteins [Transcription; Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.17 E-value=0.00051 Score=85.11 Aligned_cols=79 Identities=20% Similarity=0.260 Sum_probs=66.7
Q ss_pred ceeeeeecccCCCCCCCChhHHHHHHHhCCEEecccCCCccEEEecC-CCCHHHHHHHhCCCcEEcHHHHHHHHHhccCC
Q 002143 873 CRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANS-LGTDKVNWALSTGRFVVHPGWVEASALLYRRA 951 (960)
Q Consensus 873 cvIvFSG~fP~~~~npe~~~LwklAe~LGAtVssdVd~kVTHLVAss-~gT~Kv~~Alk~GI~IVSpdWLedC~~~wkRv 951 (960)
..+.|+++.. ...+.+.++.+|+.|.... .+.||+|+.+ ..|.|+..|+..|++||+++||.+|++.+..+
T Consensus 660 ~~~lfs~~~~-------~~~~k~~~k~lg~s~~ss~-~e~Th~i~~rirRT~k~Leai~~G~~ivT~~wL~s~~k~g~~~ 731 (896)
T KOG2043|consen 660 IEVLFSDKND-------GKNYKLAKKFLGGSVASSD-SEATHFIADRIRRTLKFLEAISSGKPLVTPQWLVSSLKSGEKL 731 (896)
T ss_pred eeeeeeeccC-------chhhhhHHhhccceeeccc-ccceeeeehhhhccHHHHhhhccCCcccchHHHHHHhhccccc
Confidence 6678888632 2346677888898888654 5899999987 67999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 002143 952 NEQDFAIK 959 (960)
Q Consensus 952 DEs~YlL~ 959 (960)
||..|.+.
T Consensus 732 dek~yil~ 739 (896)
T KOG2043|consen 732 DEKPYILH 739 (896)
T ss_pred cCcccccc
Confidence 99999874
No 36
>COG5275 BRCT domain type II [General function prediction only]
Probab=97.12 E-value=0.00082 Score=71.24 Aligned_cols=80 Identities=14% Similarity=0.113 Sum_probs=68.8
Q ss_pred HHHHHHhhhcCceeeeeecccCCCCCCCChhHHHHHHHhCCEEecccCCCccEEEecC-CCCHHHHHHHhCCCcEEcHHH
Q 002143 862 LAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANS-LGTDKVNWALSTGRFVVHPGW 940 (960)
Q Consensus 862 LkelRrqILkGcvIvFSG~fP~~~~npe~~~LwklAe~LGAtVssdVd~kVTHLVAss-~gT~Kv~~Alk~GI~IVSpdW 940 (960)
..+..+.+|+|.+|+|+|+++. ..+.....++..+||.|......++|.||+.. .|..|++.+++++|+.+..+-
T Consensus 149 ~peg~~~cL~G~~fVfTG~l~T----lsR~~a~~lvk~yGgrvT~~pSskTtflvlGdnaGP~K~ekiKqlkIkaidEeg 224 (276)
T COG5275 149 VPEGERECLKGKVFVFTGDLKT----LSRDDAKTLVKVYGGRVTAVPSSKTTFLVLGDNAGPSKMEKIKQLKIKAIDEEG 224 (276)
T ss_pred CCCCCcccccccEEEEeccccc----ccchhHHHHHHHhCCeeecccccceeEEEecCCCChHHHHHHHHhCCccccHHH
Confidence 4567899999999999999873 23556778899999999999999999999986 788999999999999999887
Q ss_pred HHHHH
Q 002143 941 VEASA 945 (960)
Q Consensus 941 LedC~ 945 (960)
+..-+
T Consensus 225 f~~LI 229 (276)
T COG5275 225 FDSLI 229 (276)
T ss_pred HHHHH
Confidence 76544
No 37
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=97.11 E-value=0.00086 Score=74.26 Aligned_cols=74 Identities=23% Similarity=0.358 Sum_probs=59.7
Q ss_pred hhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeec-cCHHHHHHHhhcc-eEE
Q 002143 641 MFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLR-PGIWTFLERASKL-FEM 718 (960)
Q Consensus 641 lls~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLR-PgL~EFLeeLSk~-YEI 718 (960)
+.-+.+..+|+|||+||+.... -|.+| |++.++|++|.+. +.+
T Consensus 123 ~~~~~~~~i~~D~D~TL~~~~~-----------------------------------~v~irdp~V~EtL~eLkekGikL 167 (303)
T PHA03398 123 LVWEIPHVIVFDLDSTLITDEE-----------------------------------PVRIRDPFVYDSLDELKERGCVL 167 (303)
T ss_pred eEeeeccEEEEecCCCccCCCC-----------------------------------ccccCChhHHHHHHHHHHCCCEE
Confidence 4556778999999999997631 13468 9999999999975 999
Q ss_pred EEEcCCcHHHHHHHHHHhcCCCceeeeeeeecC
Q 002143 719 HLYTMGNKLYATEMAKVLDPKGVLFAGRVISRG 751 (960)
Q Consensus 719 vIyTAgtreYAd~VLdiLDP~g~lF~~RIySRd 751 (960)
.|+|++.++++..+++.+.-.+ +|.. +++.+
T Consensus 168 aIvTNg~Re~v~~~Le~lgL~~-yFDv-II~~g 198 (303)
T PHA03398 168 VLWSYGNREHVVHSLKETKLEG-YFDI-IICGG 198 (303)
T ss_pred EEEcCCChHHHHHHHHHcCCCc-cccE-EEECC
Confidence 9999999999999999988865 6653 55443
No 38
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=97.01 E-value=0.00084 Score=68.81 Aligned_cols=121 Identities=20% Similarity=0.205 Sum_probs=65.2
Q ss_pred CeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHHHHhhc-ceEEEEEc-C
Q 002143 646 KLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYT-M 723 (960)
Q Consensus 646 KLTLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFLeeLSk-~YEIvIyT-A 723 (960)
...+|+|||.||+.......+.|.....- . ..-..+..+.-|.+-|++.+.|++|.+ -.+|.|-| +
T Consensus 3 PklvvFDLD~TlW~~~~~~~~~~Pf~~~~----------~--~~~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt 70 (169)
T PF12689_consen 3 PKLVVFDLDYTLWPPWMDTHVGPPFKKIS----------N--GNVVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRT 70 (169)
T ss_dssp -SEEEE-STTTSSSS-TTTSS-S-EEE-T----------T--S--EEETT--EE---TTHHHHHHHHHHCT--EEEEE--
T ss_pred CcEEEEcCcCCCCchhHhhccCCCceecC----------C--CCEEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECC
Confidence 35689999999998765443333221100 0 001122356679999999999999985 68999998 5
Q ss_pred CcHHHHHHHHHHhcCC---------CceeeeeeeecCCCCCCCCCCCCCCccccCCcccCCC-CcEEEEcCCCC
Q 002143 724 GNKLYATEMAKVLDPK---------GVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVR 787 (960)
Q Consensus 724 gtreYAd~VLdiLDP~---------g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLGrd-s~VVIVDDsp~ 787 (960)
..+++|.++|+.|+-. ..+|.+--++.. + + ..+.+.|.+-.|-+ +.++++||...
T Consensus 71 ~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~g-s-K-------~~Hf~~i~~~tgI~y~eMlFFDDe~~ 135 (169)
T PF12689_consen 71 DEPDWARELLKLLEIDDADGDGVPLIEYFDYLEIYPG-S-K-------TTHFRRIHRKTGIPYEEMLFFDDESR 135 (169)
T ss_dssp S-HHHHHHHHHHTT-C----------CCECEEEESSS---H-------HHHHHHHHHHH---GGGEEEEES-HH
T ss_pred CChHHHHHHHHhcCCCccccccccchhhcchhheecC-c-h-------HHHHHHHHHhcCCChhHEEEecCchh
Confidence 7899999999998876 124544222222 1 0 12445555555777 88999999854
No 39
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=96.98 E-value=0.0025 Score=60.34 Aligned_cols=101 Identities=17% Similarity=0.096 Sum_probs=64.2
Q ss_pred eEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHHHHhhcc-eEEEEEcCCc
Q 002143 647 LCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FEMHLYTMGN 725 (960)
Q Consensus 647 LTLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFLeeLSk~-YEIvIyTAgt 725 (960)
..|+||+|+||++... ..++. -+..+.|++.++|++|.+. |.++|.|++.
T Consensus 1 k~~~~D~dgtL~~~~~--~~~~~---------------------------~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~ 51 (132)
T TIGR01662 1 KGVVLDLDGTLTDDVP--YVDDE---------------------------DERILYPEVPDALAELKEAGYKVVIVTNQS 51 (132)
T ss_pred CEEEEeCCCceecCCC--CCCCH---------------------------HHheeCCCHHHHHHHHHHCCCEEEEEECCc
Confidence 3689999999996421 11110 1245789999999999754 9999999999
Q ss_pred --------HHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCccc-CCC-CcEEEEcCC
Q 002143 726 --------KLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVL-GME-SAVVIIDDS 785 (960)
Q Consensus 726 --------reYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVL-Grd-s~VVIVDDs 785 (960)
..++..+++.++-. ++. ++....+. +. ....+.+-++ .+ +.+ +.+|+|+|+
T Consensus 52 ~~~~~~~~~~~~~~~l~~~~l~--~~~--~~~~~~~~---KP-~~~~~~~~~~-~~~~~~~~~~v~IGD~ 112 (132)
T TIGR01662 52 GIGRGKFSSGRVARRLEELGVP--IDV--LYACPHCR---KP-KPGMFLEALK-RFNEIDPEESVYVGDQ 112 (132)
T ss_pred cccccHHHHHHHHHHHHHCCCC--EEE--EEECCCCC---CC-ChHHHHHHHH-HcCCCChhheEEEcCC
Confidence 88888888887653 222 22211111 11 0112333333 45 355 889999994
No 40
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=96.87 E-value=0.0011 Score=79.53 Aligned_cols=80 Identities=26% Similarity=0.345 Sum_probs=66.6
Q ss_pred CceeeeeecccCCCCCCCChhHHHHHHHhCCEEecccCCCccEEEecC------CCCHHHHHHHhCCCcEEcHHHHHHHH
Q 002143 872 GCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANS------LGTDKVNWALSTGRFVVHPGWVEASA 945 (960)
Q Consensus 872 GcvIvFSG~fP~~~~npe~~~LwklAe~LGAtVssdVd~kVTHLVAss------~gT~Kv~~Alk~GI~IVSpdWLedC~ 945 (960)
-.+.+.+|..|. +...+.+.|.. ++...+++.|||+|++. .+|.||..++.+|+||++..|+.+|+
T Consensus 478 k~~~~~s~l~p~-----ek~~v~~~a~~---t~~k~~~~~~thvi~~~~~~g~c~rTlk~~~gil~gkwi~~~~w~~~s~ 549 (684)
T KOG4362|consen 478 KLVLLVSGLTPS-----EKQLVEKFAVD---TISKFWIEPVTHVIASTDLEGACLRTLKVLMGILRGKWILSYDWVLASL 549 (684)
T ss_pred ceeeeeccCCcc-----hHHHHHHHHHH---HHhhccCCCceeeeeecccccchhhhHHHHHHhhcCceeeeHHHHHHHH
Confidence 345677777554 23456666766 78888899999999985 57999999999999999999999999
Q ss_pred HhccCCCCCCCCCC
Q 002143 946 LLYRRANEQDFAIK 959 (960)
Q Consensus 946 ~~wkRvDEs~YlL~ 959 (960)
+..+.++|..|.|.
T Consensus 550 k~~~~~~eepfEl~ 563 (684)
T KOG4362|consen 550 KLRKWVSEEPFELQ 563 (684)
T ss_pred HhcCCCCCCCeeEe
Confidence 99999999999873
No 41
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair]
Probab=96.79 E-value=0.0029 Score=76.77 Aligned_cols=81 Identities=16% Similarity=0.133 Sum_probs=64.7
Q ss_pred hhhcCceee-eeecccCCCCCCCChhHHHHHHHhCCEEecccCCCccEEEe--cCCCCHHHHHHHhCCCcEEcHHHHHHH
Q 002143 868 KILAGCRIV-FSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVA--NSLGTDKVNWALSTGRFVVHPGWVEAS 944 (960)
Q Consensus 868 qILkGcvIv-FSG~fP~~~~npe~~~LwklAe~LGAtVssdVd~kVTHLVA--ss~gT~Kv~~Alk~GI~IVSpdWLedC 944 (960)
.+|.|+.+| ++|.- -.+..+.+-+++-.+||.+...+.+.+||.|+ ....+.+-.+|+++++-||+|.||++|
T Consensus 632 ~if~gl~f~Vlsgt~----~~~tk~~le~~ivenGG~iv~nv~p~~~~ci~~a~~et~~vk~~~~~~~cdVl~p~Wlldc 707 (881)
T KOG0966|consen 632 NIFDGLEFCVLSGTS----ETHTKAKLEEIIVENGGKIVQNVGPSDTLCIATAGKETTRVKAQAIKRSCDVLKPAWLLDC 707 (881)
T ss_pred hhhcCeeEEEecCCc----ccccHHHHHHHHHHcCCEEEEcCCCCCcceEEeccccchHHHHHHHhccCceeeHHHHHHH
Confidence 489999884 55541 12234789999999999999999999999997 445566666788889999999999999
Q ss_pred HHhccCCC
Q 002143 945 ALLYRRAN 952 (960)
Q Consensus 945 ~~~wkRvD 952 (960)
+...+.++
T Consensus 708 c~~~~l~p 715 (881)
T KOG0966|consen 708 CKKQRLLP 715 (881)
T ss_pred Hhhhhccc
Confidence 99777555
No 42
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=96.73 E-value=0.0017 Score=71.47 Aligned_cols=107 Identities=21% Similarity=0.241 Sum_probs=67.2
Q ss_pred CCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHHHHhhc-ceEEEEEcC
Q 002143 645 RKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTM 723 (960)
Q Consensus 645 kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFLeeLSk-~YEIvIyTA 723 (960)
.+++||||||+||+..... + +.+ .-+. +....|++.++|+++.+ -+.+.|.|.
T Consensus 2 ~~k~~v~DlDnTlw~gv~~---e---~g~--------------~~i~------~~~~~~~~~e~L~~L~~~Gi~lai~S~ 55 (320)
T TIGR01686 2 ALKVLVLDLDNTLWGGVLG---E---DGI--------------DNLN------LSPLHKTLQEKIKTLKKQGFLLALASK 55 (320)
T ss_pred CeEEEEEcCCCCCCCCEEc---c---CCc--------------cccc------cCccHHHHHHHHHHHHhCCCEEEEEcC
Confidence 4689999999999976421 0 000 0000 12247899999999985 489999999
Q ss_pred CcHHHHHHHHHH----hcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCcccCCC-CcEEEEcCCCC
Q 002143 724 GNKLYATEMAKV----LDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVR 787 (960)
Q Consensus 724 gtreYAd~VLdi----LDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLGrd-s~VVIVDDsp~ 787 (960)
..+.+|..+++. +.... +|..-... +.. +. ..++-+...+|.. ..+|+|||++.
T Consensus 56 n~~~~a~~~l~~~~~~~~~~~-~f~~~~~~----~~p-k~----~~i~~~~~~l~i~~~~~vfidD~~~ 114 (320)
T TIGR01686 56 NDEDDAKKVFERRKDFILQAE-DFDARSIN----WGP-KS----ESLRKIAKKLNLGTDSFLFIDDNPA 114 (320)
T ss_pred CCHHHHHHHHHhCccccCcHH-HeeEEEEe----cCc-hH----HHHHHHHHHhCCCcCcEEEECCCHH
Confidence 999999999987 54433 45431111 110 00 1122222235655 78999999984
No 43
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=96.53 E-value=0.0066 Score=61.18 Aligned_cols=108 Identities=14% Similarity=0.075 Sum_probs=66.7
Q ss_pred eEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHHHHhhc-ceEEEEEcCC-
Q 002143 647 LCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTMG- 724 (960)
Q Consensus 647 LTLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFLeeLSk-~YEIvIyTAg- 724 (960)
+.|.||.|+||++...+ . |... ..-++++-||+.++|++|.+ -|.++|.|+.
T Consensus 2 ~~~~~d~dg~l~~~~~~----~---------------------~~~~-~~~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~ 55 (161)
T TIGR01261 2 KILFIDRDGTLIEEPPS----D---------------------FQVD-ALEKLRFEKGVIPALLKLKKAGYKFVMVTNQD 55 (161)
T ss_pred CEEEEeCCCCccccCCC----c---------------------cccC-CHHHeeECCCHHHHHHHHHHCCCeEEEEeCCc
Confidence 57999999999985321 0 0000 01146789999999999986 5999999996
Q ss_pred --------------cHHHHHHHHHHhcCCCceeeeeeee----cCCCCCCCCCCCCCCccccCCcccCCC-CcEEEEcCC
Q 002143 725 --------------NKLYATEMAKVLDPKGVLFAGRVIS----RGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDS 785 (960)
Q Consensus 725 --------------treYAd~VLdiLDP~g~lF~~RIyS----Rddc~~~~dGder~~yiKDLsrVLGrd-s~VVIVDDs 785 (960)
...|+..+++.++-. |...+++ .+++. ..+.. ...+..-++ .++.+ +.+++|+|+
T Consensus 56 g~~~~~~~~~~~~~~~~~~~~~l~~~gl~---fd~ii~~~~~~~~~~~-~~KP~-~~~~~~~~~-~~~~~~~e~l~IGD~ 129 (161)
T TIGR01261 56 GLGTPSFPQADFDGPHNLMLQIFRSQGII---FDDVLICPHFPDDNCD-CRKPK-IKLLEPYLK-KNLIDKARSYVIGDR 129 (161)
T ss_pred cccCCcCCHHHHHHHHHHHHHHHHHCCCc---eeEEEECCCCCCCCCC-CCCCC-HHHHHHHHH-HcCCCHHHeEEEeCC
Confidence 366777777777754 6544454 22221 12211 001111122 34555 789999998
Q ss_pred C
Q 002143 786 V 786 (960)
Q Consensus 786 p 786 (960)
.
T Consensus 130 ~ 130 (161)
T TIGR01261 130 E 130 (161)
T ss_pred H
Confidence 4
No 44
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=96.44 E-value=0.0073 Score=66.63 Aligned_cols=76 Identities=24% Similarity=0.329 Sum_probs=59.3
Q ss_pred hhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHHHHhhcce-EE
Q 002143 640 KMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLF-EM 718 (960)
Q Consensus 640 ~lls~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFLeeLSk~Y-EI 718 (960)
.+.-+.+-++|+|||+|||...... ++ .-|.+.+.|.++.+.+ -+
T Consensus 116 ~~~~~~phVIVfDlD~TLItd~~~v--------------------------~I--------r~~~v~~sL~~Lk~~g~vL 161 (297)
T PF05152_consen 116 SLVWEPPHVIVFDLDSTLITDEGDV--------------------------RI--------RDPAVYDSLRELKEQGCVL 161 (297)
T ss_pred hccCCCCcEEEEECCCcccccCCcc--------------------------cc--------CChHHHHHHHHHHHcCCEE
Confidence 3455778899999999999764200 00 2377889999999875 89
Q ss_pred EEEcCCcHHHHHHHHHHhcCCCceeeeeeeecC
Q 002143 719 HLYTMGNKLYATEMAKVLDPKGVLFAGRVISRG 751 (960)
Q Consensus 719 vIyTAgtreYAd~VLdiLDP~g~lF~~RIySRd 751 (960)
++|+.|.++||..-++.++-.+ +|.- |+++.
T Consensus 162 vLWSyG~~eHV~~sl~~~~L~~-~Fd~-ii~~G 192 (297)
T PF05152_consen 162 VLWSYGNREHVRHSLKELKLEG-YFDI-IICGG 192 (297)
T ss_pred EEecCCCHHHHHHHHHHhCCcc-ccEE-EEeCC
Confidence 9999999999999999999775 7875 77654
No 45
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.43 E-value=0.0027 Score=68.15 Aligned_cols=130 Identities=15% Similarity=0.127 Sum_probs=84.0
Q ss_pred cCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHHHHhhcc-eEEEEE
Q 002143 643 SARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FEMHLY 721 (960)
Q Consensus 643 s~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFLeeLSk~-YEIvIy 721 (960)
..++..+++|+|+||....... +. +|.. .....+.|++.++|+++.+. +.++|.
T Consensus 155 ~~~~~~~~~D~dgtl~~~~~~~---~~--~~~~--------------------~~~~~~~~~~~~~l~~l~~~g~~i~i~ 209 (300)
T PHA02530 155 PGLPKAVIFDIDGTLAKMGGRS---PY--DWTK--------------------VKEDKPNPMVVELVKMYKAAGYEIIVV 209 (300)
T ss_pred CCCCCEEEEECCCcCcCCCCCC---cc--chhh--------------------cccCCCChhHHHHHHHHHhCCCEEEEE
Confidence 4457899999999999764211 10 1110 01234699999999999765 999999
Q ss_pred cCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCC----CC-CCCCCccccCCcccCC-C-CcEEEEcCCCCccccCcc
Q 002143 722 TMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPF----DG-DERVPKSKDLEGVLGM-E-SAVVIIDDSVRVWPHNKL 794 (960)
Q Consensus 722 TAgtreYAd~VLdiLDP~g~lF~~RIySRddc~~~~----dG-der~~yiKDLsrVLGr-d-s~VVIVDDsp~vw~~qpd 794 (960)
|+....++..+++.|+..+.+|.. ++..+.+..+. ++ .+...+.+.|.+ ++. . ..+|+|||++.....-..
T Consensus 210 T~r~~~~~~~~l~~l~~~~~~f~~-i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~-~~~~~~~~~~~vgD~~~d~~~a~~ 287 (300)
T PHA02530 210 SGRDGVCEEDTVEWLRQTDIWFDD-LIGRPPDMHFQREQGDKRPDDVVKEEIFWE-KIAPKYDVLLAVDDRDQVVDMWRR 287 (300)
T ss_pred eCCChhhHHHHHHHHHHcCCchhh-hhCCcchhhhcccCCCCCCcHHHHHHHHHH-HhccCceEEEEEcCcHHHHHHHHH
Confidence 999999999999999988767764 55444210000 00 001123334443 355 3 789999999976654445
Q ss_pred Ccccc
Q 002143 795 NLIVV 799 (960)
Q Consensus 795 N~I~I 799 (960)
++|.+
T Consensus 288 ~Gi~~ 292 (300)
T PHA02530 288 IGLEC 292 (300)
T ss_pred hCCeE
Confidence 66654
No 46
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=96.33 E-value=0.014 Score=58.98 Aligned_cols=110 Identities=14% Similarity=0.108 Sum_probs=63.2
Q ss_pred CCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHHHHhh-cceEEEEEcC
Q 002143 645 RKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERAS-KLFEMHLYTM 723 (960)
Q Consensus 645 kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFLeeLS-k~YEIvIyTA 723 (960)
.+.+++||+|+||+-+.... ..+. .| .-|..+-||+.++|++|. +.|.++|.|+
T Consensus 12 ~~k~~~~D~Dgtl~~~~~~~-~~~~--------------~~----------~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN 66 (166)
T TIGR01664 12 QSKVAAFDLDGTLITTRSGK-VFPT--------------SA----------SDWRFLYPEIPAKLQELDDEGYKIVIFTN 66 (166)
T ss_pred cCcEEEEeCCCceEecCCCC-cccC--------------Ch----------HHeEEecCCHHHHHHHHHHCCCEEEEEeC
Confidence 45678999999999764210 0000 00 114445699999999996 5799999999
Q ss_pred CcHH------------HHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCcccC--CC-CcEEEEcCCC
Q 002143 724 GNKL------------YATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLG--ME-SAVVIIDDSV 786 (960)
Q Consensus 724 gtre------------YAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLG--rd-s~VVIVDDsp 786 (960)
+... ++..+++.++-. + .-++.-+.. ...+.. ...+..-+. .+| .+ +.+++|.|++
T Consensus 67 ~~~~~~~~~~~~~~~~~i~~~l~~~gl~---~-~~ii~~~~~-~~~KP~-p~~~~~~~~-~~~~~~~~~~~v~VGD~~ 137 (166)
T TIGR01664 67 QSGIGRGKLSAESFKNKIEAFLEKLKVP---I-QVLAATHAG-LYRKPM-TGMWEYLQS-QYNSPIKMTRSFYVGDAA 137 (166)
T ss_pred CcccccCcccHHHHHHHHHHHHHHcCCC---E-EEEEecCCC-CCCCCc-cHHHHHHHH-HcCCCCCchhcEEEECCC
Confidence 8763 456666766642 2 123322221 111110 001222222 345 44 7899999986
No 47
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=96.30 E-value=0.0046 Score=66.36 Aligned_cols=100 Identities=10% Similarity=0.101 Sum_probs=58.5
Q ss_pred hcCCCeEEEEeCCCceeecccCC--C---CCCchhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHHHHhhcc-
Q 002143 642 FSARKLCLVLDLDHTLLNSAKFH--E---VDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL- 715 (960)
Q Consensus 642 ls~kKLTLVLDLDETLVHSs~~~--e---ldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFLeeLSk~- 715 (960)
-.++++.++|||||||+.++..- . .++..-..+. ..+....+. ....-.....|++.+||+++.+.
T Consensus 59 ~~~~p~aViFDlDgTLlDSs~~~~~G~~~~s~~~~~~l~-------g~~~w~~~~-~~~~~~s~p~~~a~elL~~l~~~G 130 (237)
T TIGR01672 59 EGRPPIAVSFDIDDTVLFSSPGFWRGKKTFSPGSEDYLK-------NQVFWEKVN-NGWDEFSIPKEVARQLIDMHQRRG 130 (237)
T ss_pred CCCCCeEEEEeCCCccccCcHHHhCCcccCCHHHhhhhc-------ChHHHHHHH-HhcccCCcchhHHHHHHHHHHHCC
Confidence 34556799999999999997520 0 0110000000 000000000 00112334455599999999864
Q ss_pred eEEEEEcCC----cHHHHHHHHHHhcCCCceeeeeeeecC
Q 002143 716 FEMHLYTMG----NKLYATEMAKVLDPKGVLFAGRVISRG 751 (960)
Q Consensus 716 YEIvIyTAg----treYAd~VLdiLDP~g~lF~~RIySRd 751 (960)
+.|+|.|+. .+.+++.+++.+.-.. +|.- ++..+
T Consensus 131 ~~i~iVTnr~~~k~~~~a~~ll~~lGi~~-~f~~-i~~~d 168 (237)
T TIGR01672 131 DAIFFVTGRTPGKTDTVSKTLAKNFHIPA-MNPV-IFAGD 168 (237)
T ss_pred CEEEEEeCCCCCcCHHHHHHHHHHhCCch-heeE-EECCC
Confidence 999999998 6779999999887654 5643 55543
No 48
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=96.25 E-value=0.018 Score=56.27 Aligned_cols=65 Identities=18% Similarity=0.096 Sum_probs=46.2
Q ss_pred eEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHHHHhhc-ceEEEEEcCCc
Q 002143 647 LCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTMGN 725 (960)
Q Consensus 647 LTLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFLeeLSk-~YEIvIyTAgt 725 (960)
.+|+||+|+||+...... +. ..+ --+.+.||+.++|+.|.+ -|.++|.|++.
T Consensus 1 ~~~~~d~dgtl~~~~~~~-~~---~~~-----------------------~~~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~ 53 (147)
T TIGR01656 1 PALFLDRDGVINEDTVSD-YP---RSL-----------------------DDWQLRPGAVPALLTLRAAGYTVVVVTNQS 53 (147)
T ss_pred CeEEEeCCCceeccCCcc-cC---CCH-----------------------HHeEEcCChHHHHHHHHHCCCEEEEEeCCC
Confidence 368999999999885310 00 000 013578999999999975 59999999987
Q ss_pred H---------------HHHHHHHHHhcC
Q 002143 726 K---------------LYATEMAKVLDP 738 (960)
Q Consensus 726 r---------------eYAd~VLdiLDP 738 (960)
+ .++..+++.++-
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l 81 (147)
T TIGR01656 54 GIGRGYFSAEAFRAPNGRVLELLRQLGV 81 (147)
T ss_pred cccCCcCCHHHHHHHHHHHHHHHHhCCC
Confidence 4 566677776654
No 49
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=96.25 E-value=0.0087 Score=58.85 Aligned_cols=49 Identities=16% Similarity=0.372 Sum_probs=40.4
Q ss_pred EeeccCHHHHHHHhhcc-eEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeee
Q 002143 699 TKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVIS 749 (960)
Q Consensus 699 VkLRPgL~EFLeeLSk~-YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIyS 749 (960)
+.++|++.++|+.+.+. +.++|.|++...+++.+++.++-.. +|.. +++
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~~-i~~ 120 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEKD-VFIE-IYS 120 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCChh-heeE-Eec
Confidence 68999999999999764 9999999999999999999876443 4543 443
No 50
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=96.20 E-value=0.013 Score=63.96 Aligned_cols=89 Identities=21% Similarity=0.295 Sum_probs=56.9
Q ss_pred cCCCeEEEEeCCCceeecccC--------CCCCCc-hhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHHHHhh
Q 002143 643 SARKLCLVLDLDHTLLNSAKF--------HEVDPV-HDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERAS 713 (960)
Q Consensus 643 s~kKLTLVLDLDETLVHSs~~--------~eldP~-~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFLeeLS 713 (960)
+.+++.+|||||||++..+.. ..+++. .++|.. ..-...-||+.+||+.+.
T Consensus 72 ~~kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~~w~~wv~--------------------~~~a~~ipGA~e~L~~L~ 131 (266)
T TIGR01533 72 KDKKYAIVLDLDETVLDNSPYQGYQVLNNKPFDPETWDKWVQ--------------------AAQAKPVAGALDFLNYAN 131 (266)
T ss_pred CCCCCEEEEeCccccccChHHHHHHhcCCCcCCHHHHHHHHH--------------------cCCCCcCccHHHHHHHHH
Confidence 578899999999999987521 001110 111111 112346799999999996
Q ss_pred c-ceEEEEEcCCcHHHHHHHHHHhcCCCc--eeeeeeeecC
Q 002143 714 K-LFEMHLYTMGNKLYATEMAKVLDPKGV--LFAGRVISRG 751 (960)
Q Consensus 714 k-~YEIvIyTAgtreYAd~VLdiLDP~g~--lF~~RIySRd 751 (960)
+ -+.|+|.|+....+.+..++.|.-.|. .+...|+.|+
T Consensus 132 ~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~~d~lllr~ 172 (266)
T TIGR01533 132 SKGVKIFYVSNRSEKEKAATLKNLKRFGFPQADEEHLLLKK 172 (266)
T ss_pred HCCCeEEEEeCCCcchHHHHHHHHHHcCcCCCCcceEEeCC
Confidence 5 589999999987777766666654442 1223466554
No 51
>KOG2481 consensus Protein required for normal rRNA processing [RNA processing and modification]
Probab=96.17 E-value=0.0047 Score=72.07 Aligned_cols=80 Identities=23% Similarity=0.378 Sum_probs=63.3
Q ss_pred HhhhcCceeeeeecccCCCCCCCChhHHHHHHHhCCEEeccc----------CCCccEEEecCCC-CHHHHHHHhCCCcE
Q 002143 867 RKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHI----------DDQVTHVVANSLG-TDKVNWALSTGRFV 935 (960)
Q Consensus 867 rqILkGcvIvFSG~fP~~~~npe~~~LwklAe~LGAtVssdV----------d~kVTHLVAss~g-T~Kv~~Alk~GI~I 935 (960)
+.+|+||++.++.-+|. ..|.=+|..+||.|..+- +..+||=|+-.++ +.+| .|...
T Consensus 325 kslF~glkFfl~reVPr-------esL~fiI~s~GG~V~wd~~~~g~~~~~~d~~ITH~IvDrP~~~~~v-----~gR~Y 392 (570)
T KOG2481|consen 325 KSLFSGLKFFLNREVPR-------ESLEFIIRSFGGKVSWDPLGIGATYDESDERITHQIVDRPGQQTSV-----IGRTY 392 (570)
T ss_pred HHHhhcceeeeeccCch-------HHHHHHHHHcCCceecCccCCCCcccccccceeeeeecccCcccee-----eeeee
Confidence 45899999999987664 356667999999998882 3467999998765 1122 47889
Q ss_pred EcHHHHHHHHHhccCCCCCCCCC
Q 002143 936 VHPGWVEASALLYRRANEQDFAI 958 (960)
Q Consensus 936 VSpdWLedC~~~wkRvDEs~YlL 958 (960)
|.|+||+||+-...+++-..|..
T Consensus 393 vQPQWvfDsvNar~llpt~~Y~~ 415 (570)
T KOG2481|consen 393 VQPQWVFDSVNARLLLPTEKYFP 415 (570)
T ss_pred ecchhhhhhccchhhccHhhhCC
Confidence 99999999999999999888864
No 52
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=96.03 E-value=0.017 Score=58.11 Aligned_cols=53 Identities=13% Similarity=0.035 Sum_probs=38.1
Q ss_pred CeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHHHHhhcc-eEEEEEcCC
Q 002143 646 KLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FEMHLYTMG 724 (960)
Q Consensus 646 KLTLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFLeeLSk~-YEIvIyTAg 724 (960)
.+.|+||+|+||+-... .... . .. .+.+.||+.++|++|.+. |.++|.|++
T Consensus 3 ~~~~~~d~~~t~~~~~~-----~~~~-~---------------------~~-~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~ 54 (181)
T PRK08942 3 MKAIFLDRDGVINVDSD-----GYVK-S---------------------PD-EWIPIPGSIEAIARLKQAGYRVVVATNQ 54 (181)
T ss_pred ccEEEEECCCCcccCCc-----cccC-C---------------------HH-HeEECCCHHHHHHHHHHCCCEEEEEeCC
Confidence 46899999999875431 1100 0 00 245789999999999875 999999998
Q ss_pred cH
Q 002143 725 NK 726 (960)
Q Consensus 725 tr 726 (960)
..
T Consensus 55 ~~ 56 (181)
T PRK08942 55 SG 56 (181)
T ss_pred cc
Confidence 73
No 53
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=96.01 E-value=0.016 Score=58.21 Aligned_cols=28 Identities=18% Similarity=0.253 Sum_probs=24.2
Q ss_pred EeeccCHHHHHHHhhcc-eEEEEEcCCcH
Q 002143 699 TKLRPGIWTFLERASKL-FEMHLYTMGNK 726 (960)
Q Consensus 699 VkLRPgL~EFLeeLSk~-YEIvIyTAgtr 726 (960)
+.+.||+.++|++|.+. |.++|.|+...
T Consensus 25 ~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~ 53 (176)
T TIGR00213 25 FEFIDGVIDALRELKKMGYALVLVTNQSG 53 (176)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCcc
Confidence 34679999999999865 99999999885
No 54
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=95.86 E-value=0.0069 Score=58.33 Aligned_cols=82 Identities=16% Similarity=0.174 Sum_probs=54.6
Q ss_pred EEeeccCHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCcccCCC
Q 002143 698 WTKLRPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 776 (960)
Q Consensus 698 yVkLRPgL~EFLeeLS-k~YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLGrd 776 (960)
.....||+.++|+.+. +.+.++|.|++.+.++..+++.+ -..+|. .++..++.. .+.+ ...+.+=+. .+|..
T Consensus 62 ~~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~--l~~~f~-~i~~~~~~~--~Kp~-~~~~~~~~~-~~~~~ 134 (154)
T TIGR01549 62 EEAYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH--LGDYFD-LILGSDEFG--AKPE-PEIFLAALE-SLGLP 134 (154)
T ss_pred hheeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH--HHhcCc-EEEecCCCC--CCcC-HHHHHHHHH-HcCCC
Confidence 3456699999999996 45999999999999999999984 123565 366655432 2211 112333333 34443
Q ss_pred CcEEEEcCCC
Q 002143 777 SAVVIIDDSV 786 (960)
Q Consensus 777 s~VVIVDDsp 786 (960)
..+|+|+|+.
T Consensus 135 ~~~l~iGDs~ 144 (154)
T TIGR01549 135 PEVLHVGDNL 144 (154)
T ss_pred CCEEEEeCCH
Confidence 3799999984
No 55
>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]
Probab=95.66 E-value=0.01 Score=67.59 Aligned_cols=81 Identities=20% Similarity=0.315 Sum_probs=62.5
Q ss_pred HhhhcCceeeeeecccCCCCCCCChhHHHHHHHhCCEEe-----------cccCCCccEEEecCCCCHHHHHHHhCCCcE
Q 002143 867 RKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCT-----------KHIDDQVTHVVANSLGTDKVNWALSTGRFV 935 (960)
Q Consensus 867 rqILkGcvIvFSG~fP~~~~npe~~~LwklAe~LGAtVs-----------sdVd~kVTHLVAss~gT~Kv~~Alk~GI~I 935 (960)
..+|.|+++.+|.-+|. ..|.=+|..+||.|. .+++..|||-||-.+- ..-+--|...
T Consensus 348 ~slFS~f~FyisreVp~-------dsLefiilscGG~V~~~p~~~~i~~~~~vD~~vth~i~drp~----~~~kvegrtY 416 (591)
T COG5163 348 KSLFSGFKFYISREVPG-------DSLEFIILSCGGSVVGSPCEADIHVSEKVDEKVTHQIVDRPV----MKNKVEGRTY 416 (591)
T ss_pred hhhhhceEEEEeccccc-------hHHHHHHHHcCCcccCchhhccCCchhhccchhhhhhccchh----hhhhhcceee
Confidence 45899999999987664 235556889999884 4567789999997652 1122248899
Q ss_pred EcHHHHHHHHHhccCCCCCCCCC
Q 002143 936 VHPGWVEASALLYRRANEQDFAI 958 (960)
Q Consensus 936 VSpdWLedC~~~wkRvDEs~YlL 958 (960)
|.|+||+||+..+++..-..|.+
T Consensus 417 iQPQw~fDsiNkG~l~~~~~Y~~ 439 (591)
T COG5163 417 IQPQWLFDSINKGKLACVENYCV 439 (591)
T ss_pred echHHHHhhhccccchhhhhccc
Confidence 99999999999999998888865
No 56
>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms]
Probab=94.72 E-value=0.008 Score=72.18 Aligned_cols=95 Identities=18% Similarity=0.229 Sum_probs=77.5
Q ss_pred hHHHHHHHHHhhhcCceeeeeecccCCCCCCCChhHHHHHHHhCCEEecccCCCccEEEecCCCCHHHHHHHhCCCcEEc
Q 002143 858 VRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVH 937 (960)
Q Consensus 858 VR~ILkelRrqILkGcvIvFSG~fP~~~~npe~~~LwklAe~LGAtVssdVd~kVTHLVAss~gT~Kv~~Alk~GI~IVS 937 (960)
++.....+|-..|.||.++|-|| + ..+...+....+.-||+|.. =+..|||||.....+.-.-.+.+....+|.
T Consensus 199 ~~~f~d~hrl~~feg~~~~f~gF-~----~ee~~~m~~sle~~gg~~a~-~d~~cthvvv~e~~~~~~p~~~s~~~~~vk 272 (850)
T KOG3524|consen 199 EPCFVDKHRLGVFEGLSLFFHGF-K----QEEIDDMLRSLENTGGKLAP-SDTLCTHVVVNEDNDEVEPLAVSSNQVHVK 272 (850)
T ss_pred ccchhhhhccccccCCeEeecCC-c----HHHHHHHHHHHHhcCCcccC-CCCCceeEeecCCccccccccccccceeec
Confidence 45566778889999999999997 2 23445677788999999999 567899999988765555556777789999
Q ss_pred HHHHHHHHHhccCCCCCCCCC
Q 002143 938 PGWVEASALLYRRANEQDFAI 958 (960)
Q Consensus 938 pdWLedC~~~wkRvDEs~YlL 958 (960)
.+|+|-++..+.+..|.+|+.
T Consensus 273 ~ewfw~siq~g~~a~e~~yl~ 293 (850)
T KOG3524|consen 273 KEWFWVSIQRGCCAIEDNYLL 293 (850)
T ss_pred ccceEEEEecchhccccceec
Confidence 999999999999999999975
No 57
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=94.65 E-value=0.06 Score=57.99 Aligned_cols=100 Identities=7% Similarity=-0.038 Sum_probs=57.0
Q ss_pred cCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCc---c--eeEeeccceEEEeeccCHHHHHHHhh-cce
Q 002143 643 SARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPH---R--HLFRFPHMGMWTKLRPGIWTFLERAS-KLF 716 (960)
Q Consensus 643 s~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~---~--~~F~l~~~~~yVkLRPgL~EFLeeLS-k~Y 716 (960)
..+++.+|+|+|||+++++..... +. ..+... ...+ . ..+.......+....||+.+||+++. +-+
T Consensus 60 ~~~p~av~~DIDeTvldnsp~~~~-~~--~~f~~~-----~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~ 131 (237)
T PRK11009 60 GRPPMAVGFDIDDTVLFSSPGFWR-GK--KTFSPG-----SEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHVKRGD 131 (237)
T ss_pred CCCCcEEEEECcCccccCCchhee-ee--eccCCC-----cccccChHHHHHHHHhcccccCcchHHHHHHHHHHHHCCC
Confidence 345779999999999987531000 00 000000 0000 0 00000112345667777999999994 669
Q ss_pred EEEEEcC----CcHHHHHHHHHHhcC-CCceeeeeeeecC
Q 002143 717 EMHLYTM----GNKLYATEMAKVLDP-KGVLFAGRVISRG 751 (960)
Q Consensus 717 EIvIyTA----gtreYAd~VLdiLDP-~g~lF~~RIySRd 751 (960)
+|++-|+ ....+++.+++.+.- ...+|.- ++..+
T Consensus 132 ~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~v-il~gd 170 (237)
T PRK11009 132 SIYFITGRTATKTETVSKTLADDFHIPADNMNPV-IFAGD 170 (237)
T ss_pred eEEEEeCCCCcccHHHHHHHHHHcCCCcccceeE-EEcCC
Confidence 9999999 456788888886654 2335643 55443
No 58
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=94.44 E-value=0.042 Score=55.96 Aligned_cols=84 Identities=19% Similarity=0.298 Sum_probs=61.0
Q ss_pred EEeeccCHHHHHHHhhcc-eEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCcccCCC
Q 002143 698 WTKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 776 (960)
Q Consensus 698 yVkLRPgL~EFLeeLSk~-YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLGrd 776 (960)
++.+.||+.+||++|.+. +.++|.|++...++...++.++-.. +|.. +++.++.+. .+.+ ...+.+-++ .+|-+
T Consensus 92 ~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~-~f~~-i~~~~~~~~-~KP~-~~~~~~~~~-~~~~~ 166 (221)
T TIGR02253 92 YLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVRD-FFDA-VITSEEEGV-EKPH-PKIFYAALK-RLGVK 166 (221)
T ss_pred hCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChHH-hccE-EEEeccCCC-CCCC-HHHHHHHHH-HcCCC
Confidence 468999999999999875 9999999999999999999887654 6765 665554321 1111 112334444 46766
Q ss_pred -CcEEEEcCCC
Q 002143 777 -SAVVIIDDSV 786 (960)
Q Consensus 777 -s~VVIVDDsp 786 (960)
+.+|+|+|++
T Consensus 167 ~~~~~~igDs~ 177 (221)
T TIGR02253 167 PEEAVMVGDRL 177 (221)
T ss_pred hhhEEEECCCh
Confidence 7899999997
No 59
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=94.28 E-value=0.05 Score=51.70 Aligned_cols=86 Identities=23% Similarity=0.307 Sum_probs=61.6
Q ss_pred EEEeeccCHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCcccCC
Q 002143 697 MWTKLRPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGM 775 (960)
Q Consensus 697 ~yVkLRPgL~EFLeeLS-k~YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLGr 775 (960)
....+.|++.+||+.+. +.|.++|.|++...++..+++.+.-. .+|.. +++.++.+. .+.+ ...|.+-++ .+|.
T Consensus 74 ~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~-~~f~~-i~~~~~~~~-~Kp~-~~~~~~~~~-~~~~ 148 (176)
T PF13419_consen 74 SKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLD-DYFDE-IISSDDVGS-RKPD-PDAYRRALE-KLGI 148 (176)
T ss_dssp GGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHG-GGCSE-EEEGGGSSS-STTS-HHHHHHHHH-HHTS
T ss_pred hccchhhhhhhhhhhcccccceeEEeecCCcccccccccccccc-ccccc-ccccchhhh-hhhH-HHHHHHHHH-HcCC
Confidence 46899999999999999 78999999999999999999988665 46774 665554321 1111 011222233 3465
Q ss_pred C-CcEEEEcCCCC
Q 002143 776 E-SAVVIIDDSVR 787 (960)
Q Consensus 776 d-s~VVIVDDsp~ 787 (960)
. +.+|+|||++.
T Consensus 149 ~p~~~~~vgD~~~ 161 (176)
T PF13419_consen 149 PPEEILFVGDSPS 161 (176)
T ss_dssp SGGGEEEEESSHH
T ss_pred CcceEEEEeCCHH
Confidence 5 88999999973
No 60
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=94.23 E-value=0.17 Score=57.62 Aligned_cols=54 Identities=19% Similarity=0.188 Sum_probs=40.2
Q ss_pred CCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHHHHhhc-ceEEEEEcC
Q 002143 645 RKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTM 723 (960)
Q Consensus 645 kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFLeeLSk-~YEIvIyTA 723 (960)
+|.+|+||=|+||+..... . +. ...-..+.+.||+.+||++|.+ .|.++|.|+
T Consensus 1 ~~k~l~lDrDgtl~~~~~~----~-----y~-----------------~~~~~~~~l~pGV~e~L~~Lk~~G~kL~IvTN 54 (354)
T PRK05446 1 MQKILFIDRDGTLIEEPPT----D-----FQ-----------------VDSLDKLAFEPGVIPALLKLQKAGYKLVMVTN 54 (354)
T ss_pred CCcEEEEeCCCCccCCCCc----c-----cc-----------------ccCcccceECcCHHHHHHHHHhCCCeEEEEEC
Confidence 4789999999999987420 0 00 0011247789999999999986 599999999
Q ss_pred C
Q 002143 724 G 724 (960)
Q Consensus 724 g 724 (960)
.
T Consensus 55 q 55 (354)
T PRK05446 55 Q 55 (354)
T ss_pred C
Confidence 4
No 61
>PRK08238 hypothetical protein; Validated
Probab=94.13 E-value=0.063 Score=63.15 Aligned_cols=48 Identities=19% Similarity=0.223 Sum_probs=39.5
Q ss_pred EeeccCHHHHHHHhhc-ceEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecC
Q 002143 699 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRG 751 (960)
Q Consensus 699 VkLRPgL~EFLeeLSk-~YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIySRd 751 (960)
+.++|++.++|+++.+ -+.++|-|++.+.|++++++.++- |.. ++.-+
T Consensus 71 lp~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGl----Fd~-Vigsd 119 (479)
T PRK08238 71 LPYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLGL----FDG-VFASD 119 (479)
T ss_pred CCCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC----CCE-EEeCC
Confidence 3578999999999975 599999999999999999998853 553 56544
No 62
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=93.40 E-value=0.18 Score=49.75 Aligned_cols=49 Identities=12% Similarity=0.021 Sum_probs=37.4
Q ss_pred eccCHHHHHHHh-hcceEEEEEcCCcHHHHH------------HHHHHhcCCCceeeeeeeec
Q 002143 701 LRPGIWTFLERA-SKLFEMHLYTMGNKLYAT------------EMAKVLDPKGVLFAGRVISR 750 (960)
Q Consensus 701 LRPgL~EFLeeL-Sk~YEIvIyTAgtreYAd------------~VLdiLDP~g~lF~~RIySR 750 (960)
..+.+.+.|+++ .+-++|+++|+-...+.. .++++|+-.+.-|.. |+-|
T Consensus 25 ~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipYd~-l~~~ 86 (126)
T TIGR01689 25 PILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPYDE-IYVG 86 (126)
T ss_pred cCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCCce-EEeC
Confidence 577788889888 567999999998888876 788899887754443 5444
No 63
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=93.12 E-value=0.11 Score=52.58 Aligned_cols=84 Identities=20% Similarity=0.262 Sum_probs=61.0
Q ss_pred EEeeccCHHHHHHHhhcceEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCccc-CCC
Q 002143 698 WTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVL-GME 776 (960)
Q Consensus 698 yVkLRPgL~EFLeeLSk~YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVL-Grd 776 (960)
.+.++||+.++|+++.+.|.++|-|++...++..+++.++-.+ +|.. +++.+++.. .+.+ ...+.+-+. .+ |..
T Consensus 95 ~~~~~~g~~~~L~~l~~~~~~~i~Sn~~~~~~~~~l~~~~l~~-~fd~-i~~~~~~~~-~KP~-~~~~~~~~~-~~~~~~ 169 (224)
T TIGR02254 95 GHQLLPGAFELMENLQQKFRLYIVTNGVRETQYKRLRKSGLFP-FFDD-IFVSEDAGI-QKPD-KEIFNYALE-RMPKFS 169 (224)
T ss_pred cCeeCccHHHHHHHHHhcCcEEEEeCCchHHHHHHHHHCCcHh-hcCE-EEEcCccCC-CCCC-HHHHHHHHH-HhcCCC
Confidence 3689999999999999779999999999999999999876554 6764 665444321 2211 112344444 45 655
Q ss_pred -CcEEEEcCCC
Q 002143 777 -SAVVIIDDSV 786 (960)
Q Consensus 777 -s~VVIVDDsp 786 (960)
+.+|+|+|++
T Consensus 170 ~~~~v~igD~~ 180 (224)
T TIGR02254 170 KEEVLMIGDSL 180 (224)
T ss_pred chheEEECCCc
Confidence 8899999986
No 64
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=93.00 E-value=0.13 Score=51.93 Aligned_cols=97 Identities=18% Similarity=0.098 Sum_probs=64.6
Q ss_pred EEeeccCHHHHHHHhhc-ceEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCcccCCC
Q 002143 698 WTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 776 (960)
Q Consensus 698 yVkLRPgL~EFLeeLSk-~YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLGrd 776 (960)
.+.++||+.++|+++.+ .|.++|.|++.+.++..+++.++-.+ +|.. +++.++.. ..+.+ ...+.+-++ .+|..
T Consensus 83 ~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~~-~~~~~~~~-~~Kp~-p~~~~~~~~-~~~~~ 157 (213)
T TIGR01449 83 LTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLAK-YFSV-LIGGDSLA-QRKPH-PDPLLLAAE-RLGVA 157 (213)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHh-hCcE-EEecCCCC-CCCCC-hHHHHHHHH-HcCCC
Confidence 46889999999999975 49999999999999999999887654 5753 66554321 11110 112333343 45665
Q ss_pred -CcEEEEcCCCCccccCccCcccc
Q 002143 777 -SAVVIIDDSVRVWPHNKLNLIVV 799 (960)
Q Consensus 777 -s~VVIVDDsp~vw~~qpdN~I~I 799 (960)
+.+++|+|+..-...-...++.+
T Consensus 158 ~~~~~~igDs~~d~~aa~~aG~~~ 181 (213)
T TIGR01449 158 PQQMVYVGDSRVDIQAARAAGCPS 181 (213)
T ss_pred hhHeEEeCCCHHHHHHHHHCCCeE
Confidence 78999999975443322344443
No 65
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=92.65 E-value=0.2 Score=59.76 Aligned_cols=113 Identities=15% Similarity=0.153 Sum_probs=67.5
Q ss_pred cCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHHHHhhc-ceEEEEE
Q 002143 643 SARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLY 721 (960)
Q Consensus 643 s~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFLeeLSk-~YEIvIy 721 (960)
..+.+++.||||+||+.+.....+ +. + + .-|..+-|++.+.|++|.+ -|.|+|+
T Consensus 165 ~~~~Kia~fD~DGTLi~t~sg~~~-~~-----------~---~----------~d~~~l~pgV~e~L~~L~~~Gy~IvIv 219 (526)
T TIGR01663 165 KGQEKIAGFDLDGTIIKTKSGKVF-PK-----------G---P----------DDWQIIFPEIPEKLKELEADGFKICIF 219 (526)
T ss_pred CccCcEEEEECCCCccccCCCccC-CC-----------C---H----------HHeeecccCHHHHHHHHHHCCCEEEEE
Confidence 356789999999999976421000 00 0 0 0133356999999999986 4999999
Q ss_pred cCCcH------------HHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCc---cccCCcccCCC-CcEEEEcCC
Q 002143 722 TMGNK------------LYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPK---SKDLEGVLGME-SAVVIIDDS 785 (960)
Q Consensus 722 TAgtr------------eYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~y---iKDLsrVLGrd-s~VVIVDDs 785 (960)
|+... .++..|++.|+- .|. -+++-++|. +.+.. ..++ .+++..-++-+ +..++|-|.
T Consensus 220 TNQ~gI~~G~~~~~~~~~ki~~iL~~lgi---pfd-viia~~~~~-~RKP~-pGm~~~a~~~~~~~~~Id~~~S~~VGDa 293 (526)
T TIGR01663 220 TNQGGIARGKINADDFKAKIEAIVAKLGV---PFQ-VFIAIGAGF-YRKPL-TGMWDHLKEEANDGTEIQEDDCFFVGDA 293 (526)
T ss_pred ECCcccccCcccHHHHHHHHHHHHHHcCC---ceE-EEEeCCCCC-CCCCC-HHHHHHHHHhcCcccCCCHHHeEEeCCc
Confidence 99766 467778877763 355 255544332 11210 0011 12221111345 789999998
Q ss_pred C
Q 002143 786 V 786 (960)
Q Consensus 786 p 786 (960)
.
T Consensus 294 a 294 (526)
T TIGR01663 294 A 294 (526)
T ss_pred c
Confidence 7
No 66
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=92.54 E-value=0.22 Score=50.89 Aligned_cols=87 Identities=18% Similarity=0.181 Sum_probs=61.7
Q ss_pred EEeeccCHHHHHHHhhc-ceEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCcccCCC
Q 002143 698 WTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 776 (960)
Q Consensus 698 yVkLRPgL~EFLeeLSk-~YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLGrd 776 (960)
.+.+.||+.++|+++.+ .+.++|.|++.+.++..+++.++-.. ||.. +++.+++.. .+.. ...+.+-+. .++..
T Consensus 80 ~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~~-~f~~-i~~~~~~~~-~Kp~-p~~~~~~~~-~~~~~ 154 (214)
T PRK13288 80 LVTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDE-FFDV-VITLDDVEH-AKPD-PEPVLKALE-LLGAK 154 (214)
T ss_pred hcccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChh-ceeE-EEecCcCCC-CCCC-cHHHHHHHH-HcCCC
Confidence 46788999999999975 59999999999999999999987665 7875 666554321 1110 112333333 34555
Q ss_pred -CcEEEEcCCCCcc
Q 002143 777 -SAVVIIDDSVRVW 789 (960)
Q Consensus 777 -s~VVIVDDsp~vw 789 (960)
+++|+|+|++.-.
T Consensus 155 ~~~~~~iGDs~~Di 168 (214)
T PRK13288 155 PEEALMVGDNHHDI 168 (214)
T ss_pred HHHEEEECCCHHHH
Confidence 8899999997444
No 67
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=92.49 E-value=0.16 Score=49.62 Aligned_cols=83 Identities=27% Similarity=0.261 Sum_probs=54.7
Q ss_pred EeeccCHHHHHHHhhc-ceEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCcccCCC-
Q 002143 699 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 776 (960)
Q Consensus 699 VkLRPgL~EFLeeLSk-~YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLGrd- 776 (960)
+.+.||+.+||+++.+ .|.++|.|++...+ ..++..++-.. +|.. ++.-++... .+.+ ...+.+-++ .+|.+
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~~-~f~~-i~~~~~~~~-~KP~-~~~~~~~~~-~~~~~~ 157 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLRD-LFDV-VIFSGDVGR-GKPD-PDIYLLALK-KLGLKP 157 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCHH-HCCE-EEEcCCCCC-CCCC-HHHHHHHHH-HcCCCc
Confidence 6789999999999986 59999999999999 66665566544 5765 443333221 1110 112222232 45666
Q ss_pred CcEEEEcCCCC
Q 002143 777 SAVVIIDDSVR 787 (960)
Q Consensus 777 s~VVIVDDsp~ 787 (960)
+.+|+|||++.
T Consensus 158 ~~~~~vgD~~~ 168 (183)
T TIGR01509 158 EECLFVDDSPA 168 (183)
T ss_pred ceEEEEcCCHH
Confidence 88999999963
No 68
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=92.41 E-value=0.18 Score=53.57 Aligned_cols=97 Identities=20% Similarity=0.146 Sum_probs=66.6
Q ss_pred EEeeccCHHHHHHHhhc-ceEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCcccCCC
Q 002143 698 WTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 776 (960)
Q Consensus 698 yVkLRPgL~EFLeeLSk-~YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLGrd 776 (960)
.+.+.||+.++|++|.+ .|.+.|-|++.+.+++.+++.++-.. ||.. +++.+++.. .+.+ ...+.+-+. .+|.+
T Consensus 106 ~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~-~Fd~-iv~~~~~~~-~KP~-p~~~~~a~~-~~~~~ 180 (248)
T PLN02770 106 QLKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSD-FFQA-VIIGSECEH-AKPH-PDPYLKALE-VLKVS 180 (248)
T ss_pred cCCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChh-hCcE-EEecCcCCC-CCCC-hHHHHHHHH-HhCCC
Confidence 36788999999999965 59999999999999999999988664 7865 666554322 1211 113444454 35665
Q ss_pred -CcEEEEcCCCCccccCccCcccc
Q 002143 777 -SAVVIIDDSVRVWPHNKLNLIVV 799 (960)
Q Consensus 777 -s~VVIVDDsp~vw~~qpdN~I~I 799 (960)
..+|+|+|++.-...-...++.+
T Consensus 181 ~~~~l~vgDs~~Di~aA~~aGi~~ 204 (248)
T PLN02770 181 KDHTFVFEDSVSGIKAGVAAGMPV 204 (248)
T ss_pred hhHEEEEcCCHHHHHHHHHCCCEE
Confidence 88999999984332223445543
No 69
>PRK06769 hypothetical protein; Validated
Probab=92.34 E-value=0.25 Score=50.05 Aligned_cols=27 Identities=15% Similarity=0.087 Sum_probs=23.4
Q ss_pred eeccCHHHHHHHhhc-ceEEEEEcCCcH
Q 002143 700 KLRPGIWTFLERASK-LFEMHLYTMGNK 726 (960)
Q Consensus 700 kLRPgL~EFLeeLSk-~YEIvIyTAgtr 726 (960)
.+-||+.++|++|.+ -|.++|.|++..
T Consensus 28 ~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~ 55 (173)
T PRK06769 28 TLFPFTKASLQKLKANHIKIFSFTNQPG 55 (173)
T ss_pred EECCCHHHHHHHHHHCCCEEEEEECCch
Confidence 467999999999976 599999999875
No 70
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=92.20 E-value=0.11 Score=58.06 Aligned_cols=89 Identities=17% Similarity=0.193 Sum_probs=55.4
Q ss_pred EEeeccCHHHHHHHhhcc-eEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecC------CCCCCCCCCCCCCccccCC
Q 002143 698 WTKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRG------DDGDPFDGDERVPKSKDLE 770 (960)
Q Consensus 698 yVkLRPgL~EFLeeLSk~-YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIySRd------dc~~~~dGder~~yiKDLs 770 (960)
.+.++||+.+||+++.+. |.+.|.|.+...|++.+++.|+-.. +|.+++-..+ .++...++......++.+.
T Consensus 179 ~l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld~-~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~la 257 (322)
T PRK11133 179 NLPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLDA-AVANELEIMDGKLTGNVLGDIVDAQYKADTLTRLA 257 (322)
T ss_pred hCCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCCe-EEEeEEEEECCEEEeEecCccCCcccHHHHHHHHH
Confidence 367899999999999865 9999999999999999999877543 3333221111 0111111110001223333
Q ss_pred cccCCC-CcEEEEcCCCC
Q 002143 771 GVLGME-SAVVIIDDSVR 787 (960)
Q Consensus 771 rVLGrd-s~VVIVDDsp~ 787 (960)
..+|-+ +.+|.|-|...
T Consensus 258 ~~lgi~~~qtIaVGDg~N 275 (322)
T PRK11133 258 QEYEIPLAQTVAIGDGAN 275 (322)
T ss_pred HHcCCChhhEEEEECCHH
Confidence 334655 78999999863
No 71
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=92.07 E-value=0.2 Score=50.55 Aligned_cols=53 Identities=26% Similarity=0.387 Sum_probs=34.1
Q ss_pred eEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHHHHhhc-ceEEEEEcCC
Q 002143 647 LCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTMG 724 (960)
Q Consensus 647 LTLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFLeeLSk-~YEIvIyTAg 724 (960)
+++.+|||+|||........ .. + + .=|..+-|++.+-|+++.+ -|.|+|+|+.
T Consensus 1 Kia~fD~DgTLi~~~s~~~f--------~~----~---~----------~D~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ 54 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKSGKKF--------PK----D---P----------DDWKFFPPGVPEALRELHKKGYKIVIVTNQ 54 (159)
T ss_dssp SEEEE-SCTTTEE-STSTTS---------S----S---T----------CGGEEC-TTHHHHHHHHHHTTEEEEEEEE-
T ss_pred CEEEEeCCCCccCCCCCCcC--------cC----C---H----------HHhhhcchhHHHHHHHHHhcCCeEEEEeCc
Confidence 46889999999998532110 00 0 0 0144567889999999986 6999999985
No 72
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=91.99 E-value=0.31 Score=49.23 Aligned_cols=93 Identities=17% Similarity=0.261 Sum_probs=61.3
Q ss_pred CCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHHHHhhcc-eEEEEEc
Q 002143 644 ARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FEMHLYT 722 (960)
Q Consensus 644 ~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFLeeLSk~-YEIvIyT 722 (960)
..-..||+|+|+||+.... ..+.|++.++|++|.+. +.++|.|
T Consensus 23 ~~v~~vv~D~Dgtl~~~~~------------------------------------~~~~pgv~e~L~~Lk~~g~~l~I~S 66 (170)
T TIGR01668 23 VGIKGVVLDKDNTLVYPDH------------------------------------NEAYPALRDWIEELKAAGRKLLIVS 66 (170)
T ss_pred CCCCEEEEecCCccccCCC------------------------------------CCcChhHHHHHHHHHHcCCEEEEEe
Confidence 4557899999999996421 11468999999999866 9999999
Q ss_pred CCc-HHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCcccCCC-CcEEEEcCCC
Q 002143 723 MGN-KLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSV 786 (960)
Q Consensus 723 Agt-reYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLGrd-s~VVIVDDsp 786 (960)
++. ..++..+++.++-. + +. . +.+.. . ..+.+-++ .+|.+ +.+++|+|+.
T Consensus 67 n~~~~~~~~~~~~~~gl~---~----~~-~-~~KP~-p---~~~~~~l~-~~~~~~~~~l~IGDs~ 118 (170)
T TIGR01668 67 NNAGEQRAKAVEKALGIP---V----LP-H-AVKPP-G---CAFRRAHP-EMGLTSEQVAVVGDRL 118 (170)
T ss_pred CCchHHHHHHHHHHcCCE---E----Ec-C-CCCCC-h---HHHHHHHH-HcCCCHHHEEEECCcc
Confidence 998 67777777766522 1 11 1 11110 0 02222233 35665 8899999996
No 73
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=91.97 E-value=0.17 Score=50.96 Aligned_cols=83 Identities=14% Similarity=0.180 Sum_probs=58.2
Q ss_pred EeeccCHHHHHHHhhcc-eEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCcccCCC-
Q 002143 699 TKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 776 (960)
Q Consensus 699 VkLRPgL~EFLeeLSk~-YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLGrd- 776 (960)
+.+.|++.++|+++.+. |.++|.|++...++..+++.+.-. .+|.. +++.++.. ..+.+ ...|.+=++ .+|..
T Consensus 91 ~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~-~~fd~-i~~s~~~~-~~KP~-~~~~~~~~~-~~~~~p 165 (198)
T TIGR01428 91 LPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLD-DPFDA-VLSADAVR-AYKPA-PQVYQLALE-ALGVPP 165 (198)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCCh-hhhhe-eEehhhcC-CCCCC-HHHHHHHHH-HhCCCh
Confidence 56789999999999986 999999999999999999887643 36764 66544432 11211 111222232 35665
Q ss_pred CcEEEEcCCC
Q 002143 777 SAVVIIDDSV 786 (960)
Q Consensus 777 s~VVIVDDsp 786 (960)
+.+|+|+|++
T Consensus 166 ~~~~~vgD~~ 175 (198)
T TIGR01428 166 DEVLFVASNP 175 (198)
T ss_pred hhEEEEeCCH
Confidence 8899999997
No 74
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=91.78 E-value=0.28 Score=49.90 Aligned_cols=97 Identities=15% Similarity=0.095 Sum_probs=65.0
Q ss_pred EEeeccCHHHHHHHhhc-ceEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCcccCCC
Q 002143 698 WTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 776 (960)
Q Consensus 698 yVkLRPgL~EFLeeLSk-~YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLGrd 776 (960)
.+.+.||+.++|+++.+ .|.++|.|++...++..+++.++-.+ +|.. +++.+++. ..+.. ...+.+-+. .+|.+
T Consensus 73 ~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~-~f~~-i~~~~~~~-~~KP~-~~~~~~~~~-~~~~~ 147 (205)
T TIGR01454 73 EVEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLLP-LFDH-VIGSDEVP-RPKPA-PDIVREALR-LLDVP 147 (205)
T ss_pred ccccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChh-heee-EEecCcCC-CCCCC-hHHHHHHHH-HcCCC
Confidence 46789999999999975 59999999999999999999888765 6764 66555432 11111 111222232 35665
Q ss_pred -CcEEEEcCCCCccccCccCcccc
Q 002143 777 -SAVVIIDDSVRVWPHNKLNLIVV 799 (960)
Q Consensus 777 -s~VVIVDDsp~vw~~qpdN~I~I 799 (960)
+.+|+|+|+..-...-...++.+
T Consensus 148 ~~~~l~igD~~~Di~aA~~~Gi~~ 171 (205)
T TIGR01454 148 PEDAVMVGDAVTDLASARAAGTAT 171 (205)
T ss_pred hhheEEEcCCHHHHHHHHHcCCeE
Confidence 78999999974443323445543
No 75
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=91.60 E-value=0.31 Score=49.61 Aligned_cols=87 Identities=18% Similarity=0.218 Sum_probs=59.4
Q ss_pred EEeeccCHHHHHHHhhc-ceEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCcccCCC
Q 002143 698 WTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 776 (960)
Q Consensus 698 yVkLRPgL~EFLeeLSk-~YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLGrd 776 (960)
.+.++||+.+||+.+.+ .+.++|.|++...++..+++.++-.. +|. .+++.+++. ..+.. ...+.+-+. .++..
T Consensus 91 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~-~~~~~~~~~-~~kp~-~~~~~~~~~-~~~~~ 165 (226)
T PRK13222 91 GSRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIAD-YFS-VVIGGDSLP-NKKPD-PAPLLLACE-KLGLD 165 (226)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCcc-Ccc-EEEcCCCCC-CCCcC-hHHHHHHHH-HcCCC
Confidence 36799999999999985 59999999999999999999887654 565 366544321 11110 001222222 45555
Q ss_pred -CcEEEEcCCCCcc
Q 002143 777 -SAVVIIDDSVRVW 789 (960)
Q Consensus 777 -s~VVIVDDsp~vw 789 (960)
+.+|+|+|+..-.
T Consensus 166 ~~~~i~igD~~~Di 179 (226)
T PRK13222 166 PEEMLFVGDSRNDI 179 (226)
T ss_pred hhheEEECCCHHHH
Confidence 8899999997433
No 76
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=91.52 E-value=0.21 Score=53.96 Aligned_cols=87 Identities=18% Similarity=0.212 Sum_probs=62.5
Q ss_pred EEeeccCHHHHHHHhhc-ceEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCcccCCC
Q 002143 698 WTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 776 (960)
Q Consensus 698 yVkLRPgL~EFLeeLSk-~YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLGrd 776 (960)
.+.+.||+.++|++|.+ .|.++|.|++.+.|+..+++.++-.. ||.. +++.+++. ..+.+ ...+.+-+. .+|..
T Consensus 107 ~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~-~Fd~-ii~~~d~~-~~KP~-Pe~~~~a~~-~l~~~ 181 (260)
T PLN03243 107 LYRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEG-FFSV-VLAAEDVY-RGKPD-PEMFMYAAE-RLGFI 181 (260)
T ss_pred CcccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHh-hCcE-EEecccCC-CCCCC-HHHHHHHHH-HhCCC
Confidence 35689999999999986 49999999999999999999887554 6775 66555432 11211 113444444 45766
Q ss_pred -CcEEEEcCCCCcc
Q 002143 777 -SAVVIIDDSVRVW 789 (960)
Q Consensus 777 -s~VVIVDDsp~vw 789 (960)
+.+|+|+|+..-.
T Consensus 182 p~~~l~IgDs~~Di 195 (260)
T PLN03243 182 PERCIVFGNSNSSV 195 (260)
T ss_pred hHHeEEEcCCHHHH
Confidence 8899999997433
No 77
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=91.35 E-value=0.39 Score=45.02 Aligned_cols=35 Identities=23% Similarity=0.152 Sum_probs=24.3
Q ss_pred ccCHHHHHHHhhcc-eEEEEEcCCcHHHHHHHHHHh
Q 002143 702 RPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVL 736 (960)
Q Consensus 702 RPgL~EFLeeLSk~-YEIvIyTAgtreYAd~VLdiL 736 (960)
=||..+||+++.+. ..+++.|+++..=...+++.|
T Consensus 16 ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L 51 (101)
T PF13344_consen 16 IPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKL 51 (101)
T ss_dssp -TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHH
T ss_pred CcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHH
Confidence 48999999999975 999999999844434444333
No 78
>PRK09449 dUMP phosphatase; Provisional
Probab=91.24 E-value=0.26 Score=50.61 Aligned_cols=83 Identities=18% Similarity=0.171 Sum_probs=59.5
Q ss_pred EeeccCHHHHHHHhhcceEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCcccCC-C-
Q 002143 699 TKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGM-E- 776 (960)
Q Consensus 699 VkLRPgL~EFLeeLSk~YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLGr-d- 776 (960)
+.+.||+.++|++|.+.|.+.|.|++...++..+++.++-.+ +|.. +++.+++.. .+.+ ...+.+-++ .+|. .
T Consensus 94 ~~~~~g~~~~L~~L~~~~~~~i~Tn~~~~~~~~~l~~~~l~~-~fd~-v~~~~~~~~-~KP~-p~~~~~~~~-~~~~~~~ 168 (224)
T PRK09449 94 CTPLPGAVELLNALRGKVKMGIITNGFTELQQVRLERTGLRD-YFDL-LVISEQVGV-AKPD-VAIFDYALE-QMGNPDR 168 (224)
T ss_pred CccCccHHHHHHHHHhCCeEEEEeCCcHHHHHHHHHhCChHH-HcCE-EEEECccCC-CCCC-HHHHHHHHH-HcCCCCc
Confidence 568999999999999889999999999999999998876554 6764 665554321 2221 112334444 3564 3
Q ss_pred CcEEEEcCCC
Q 002143 777 SAVVIIDDSV 786 (960)
Q Consensus 777 s~VVIVDDsp 786 (960)
+.+|+|+|+.
T Consensus 169 ~~~~~vgD~~ 178 (224)
T PRK09449 169 SRVLMVGDNL 178 (224)
T ss_pred ccEEEEcCCc
Confidence 6799999996
No 79
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=91.21 E-value=0.42 Score=50.50 Aligned_cols=67 Identities=16% Similarity=0.090 Sum_probs=49.5
Q ss_pred CCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHHHHhhc-ceEEEEEcC
Q 002143 645 RKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTM 723 (960)
Q Consensus 645 kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFLeeLSk-~YEIvIyTA 723 (960)
+-..+++|+|+||++... .-||+.++|++|.+ -+.++|.|+
T Consensus 7 ~~~~~~~D~dG~l~~~~~--------------------------------------~~pga~e~L~~L~~~G~~~~ivTN 48 (242)
T TIGR01459 7 DYDVFLLDLWGVIIDGNH--------------------------------------TYPGAVQNLNKIIAQGKPVYFVSN 48 (242)
T ss_pred cCCEEEEecccccccCCc--------------------------------------cCccHHHHHHHHHHCCCEEEEEeC
Confidence 344789999999987531 36899999999985 599999999
Q ss_pred CcHHHHH--HHHHHhcCCCceeeeeeeec
Q 002143 724 GNKLYAT--EMAKVLDPKGVLFAGRVISR 750 (960)
Q Consensus 724 gtreYAd--~VLdiLDP~g~lF~~RIySR 750 (960)
+.+.+++ +.++.++-...+|.. |++.
T Consensus 49 ~~~~~~~~~~~L~~~gl~~~~~~~-Ii~s 76 (242)
T TIGR01459 49 SPRNIFSLHKTLKSLGINADLPEM-IISS 76 (242)
T ss_pred CCCChHHHHHHHHHCCCCccccce-EEcc
Confidence 9998776 666766654324543 5543
No 80
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=91.13 E-value=0.16 Score=50.68 Aligned_cols=83 Identities=20% Similarity=0.261 Sum_probs=57.0
Q ss_pred EeeccCHHHHHHHhhcceEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCC---CCCCCCCCccccCCcccCC
Q 002143 699 TKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDP---FDGDERVPKSKDLEGVLGM 775 (960)
Q Consensus 699 VkLRPgL~EFLeeLSk~YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIySRddc~~~---~dGder~~yiKDLsrVLGr 775 (960)
++..||+.++|++|. +.++|.|++.+.++..+++.++-.. +|.. +++.++.... .+.+ ...+.+-+. .+|.
T Consensus 83 ~~~~~g~~~~L~~L~--~~~~i~Tn~~~~~~~~~l~~~gl~~-~fd~-i~~~~~~~~~~~~~KP~-p~~~~~~~~-~~~~ 156 (184)
T TIGR01993 83 LKPDPELRNLLLRLP--GRKIIFTNGDRAHARRALNRLGIED-CFDG-IFCFDTANPDYLLPKPS-PQAYEKALR-EAGV 156 (184)
T ss_pred CCCCHHHHHHHHhCC--CCEEEEeCCCHHHHHHHHHHcCcHh-hhCe-EEEeecccCccCCCCCC-HHHHHHHHH-HhCC
Confidence 557899999999998 6899999999999999999887543 7775 6654432210 1111 112333343 3566
Q ss_pred C-CcEEEEcCCCC
Q 002143 776 E-SAVVIIDDSVR 787 (960)
Q Consensus 776 d-s~VVIVDDsp~ 787 (960)
+ +.+++|+|++.
T Consensus 157 ~~~~~l~vgD~~~ 169 (184)
T TIGR01993 157 DPERAIFFDDSAR 169 (184)
T ss_pred CccceEEEeCCHH
Confidence 6 78999999863
No 81
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=90.66 E-value=0.34 Score=51.06 Aligned_cols=96 Identities=14% Similarity=0.016 Sum_probs=64.3
Q ss_pred EeeccCHHHHHHHhhc-ceEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCcccCC--
Q 002143 699 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGM-- 775 (960)
Q Consensus 699 VkLRPgL~EFLeeLSk-~YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLGr-- 775 (960)
+.+.||+.++|+.|.+ .+.+.|-|++.+.+++.+++.++-.+ +|.+.+++.++... .+.+ ...+.+-+. .+|.
T Consensus 98 ~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~-~f~d~ii~~~~~~~-~KP~-p~~~~~a~~-~l~~~~ 173 (253)
T TIGR01422 98 SSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQG-YRPDYNVTTDDVPA-GRPA-PWMALKNAI-ELGVYD 173 (253)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcC-CCCceEEccccCCC-CCCC-HHHHHHHHH-HcCCCC
Confidence 5789999999999976 49999999999999999999887666 44345776654321 1211 113444444 3564
Q ss_pred CCcEEEEcCCCCccccCccCccc
Q 002143 776 ESAVVIIDDSVRVWPHNKLNLIV 798 (960)
Q Consensus 776 ds~VVIVDDsp~vw~~qpdN~I~ 798 (960)
.+.+|+|.|++.=...-...++.
T Consensus 174 ~~~~l~IGDs~~Di~aA~~aGi~ 196 (253)
T TIGR01422 174 VAACVKVGDTVPDIEEGRNAGMW 196 (253)
T ss_pred chheEEECCcHHHHHHHHHCCCe
Confidence 37899999997433322334443
No 82
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=90.52 E-value=0.71 Score=49.92 Aligned_cols=102 Identities=16% Similarity=0.111 Sum_probs=62.7
Q ss_pred HHHhhhHHHhhhhcCCCeEEEEeCCCceeecccC------C--CCCCc-hhhhhhhhhccccCCCcceeEeeccceEEEe
Q 002143 630 ERTRRLEEQKKMFSARKLCLVLDLDHTLLNSAKF------H--EVDPV-HDEILRKKEEQDREKPHRHLFRFPHMGMWTK 700 (960)
Q Consensus 630 e~akrL~~q~~lls~kKLTLVLDLDETLVHSs~~------~--eldP~-~~eil~~~ee~D~~~P~~~~F~l~~~~~yVk 700 (960)
+.+........+-..+|..+|||+|||++..... . .+++. .++|+... --.
T Consensus 61 ~~a~~y~~~~~~~~dg~~A~V~DIDET~LsN~py~~~~~~g~~~~~~~~~~~wv~~~--------------------~ap 120 (229)
T TIGR01675 61 DEAYFYAKSLALSGDGMDAWIFDVDDTLLSNIPYYKKHGYGTEKTDPTAFWLWLGKG--------------------AAP 120 (229)
T ss_pred HHHHHHHHHhhccCCCCcEEEEccccccccCHHHHHHhccCCCcCCHHHHHHHHHcC--------------------CCC
Confidence 4555555544455679999999999999987521 0 01110 11222110 013
Q ss_pred eccCHHHHHHHhhc-ceEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecC
Q 002143 701 LRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRG 751 (960)
Q Consensus 701 LRPgL~EFLeeLSk-~YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIySRd 751 (960)
.-|++.+|++++.+ -++|++.|.-.....+..++.|.-.|--.-.+++-|.
T Consensus 121 aip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~~~LiLR~ 172 (229)
T TIGR01675 121 ALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFTGWKHLILRG 172 (229)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCCcCeeeecC
Confidence 56889999999864 6999999999887766666666555511013566564
No 83
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=89.99 E-value=0.21 Score=51.31 Aligned_cols=96 Identities=15% Similarity=0.069 Sum_probs=62.8
Q ss_pred EEeeccCHHHHHHHhhcceEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCcccCCC-
Q 002143 698 WTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 776 (960)
Q Consensus 698 yVkLRPgL~EFLeeLSk~YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLGrd- 776 (960)
.+.+.||+.+||+.+. +.++|.|++.+.+++.+++.++-.. +|...+++.++.. ..+.+ ...+.+-+. .+|..
T Consensus 86 ~~~~~~gv~~~L~~L~--~~~~ivTn~~~~~~~~~l~~~~l~~-~F~~~v~~~~~~~-~~KP~-p~~~~~a~~-~~~~~p 159 (221)
T PRK10563 86 ELEPIAGANALLESIT--VPMCVVSNGPVSKMQHSLGKTGMLH-YFPDKLFSGYDIQ-RWKPD-PALMFHAAE-AMNVNV 159 (221)
T ss_pred cCCcCCCHHHHHHHcC--CCEEEEeCCcHHHHHHHHHhcChHH-hCcceEeeHHhcC-CCCCC-hHHHHHHHH-HcCCCH
Confidence 3677899999999994 8999999999999999998776554 6754466554322 11111 112333333 35655
Q ss_pred CcEEEEcCCCCccccCccCcccc
Q 002143 777 SAVVIIDDSVRVWPHNKLNLIVV 799 (960)
Q Consensus 777 s~VVIVDDsp~vw~~qpdN~I~I 799 (960)
+.+|+|+|++.-...-...++.+
T Consensus 160 ~~~l~igDs~~di~aA~~aG~~~ 182 (221)
T PRK10563 160 ENCILVDDSSAGAQSGIAAGMEV 182 (221)
T ss_pred HHeEEEeCcHhhHHHHHHCCCEE
Confidence 78999999986554333344443
No 84
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=89.74 E-value=0.58 Score=48.79 Aligned_cols=114 Identities=20% Similarity=0.293 Sum_probs=76.2
Q ss_pred hhhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHHHHhhcc-eE
Q 002143 639 KKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FE 717 (960)
Q Consensus 639 ~~lls~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFLeeLSk~-YE 717 (960)
..|..++-..+|||||+|||-=.. |. .-|-+++.|+++.+. -.
T Consensus 21 ~~L~~~Gikgvi~DlDNTLv~wd~-----~~-------------------------------~tpe~~~W~~e~k~~gi~ 64 (175)
T COG2179 21 DILKAHGIKGVILDLDNTLVPWDN-----PD-------------------------------ATPELRAWLAELKEAGIK 64 (175)
T ss_pred HHHHHcCCcEEEEeccCceecccC-----CC-------------------------------CCHHHHHHHHHHHhcCCE
Confidence 556778999999999999995321 10 246677888888866 88
Q ss_pred EEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCcccCCC-CcEEEEcCCC--CccccCcc
Q 002143 718 MHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSV--RVWPHNKL 794 (960)
Q Consensus 718 IvIyTAgtreYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLGrd-s~VVIVDDsp--~vw~~qpd 794 (960)
++|.++.++.-+..++..||-.- |+ +- .+.+. ..+-|-|. .++.+ +.||+|-|+- ++...|..
T Consensus 65 v~vvSNn~e~RV~~~~~~l~v~f------i~-~A--~KP~~----~~fr~Al~-~m~l~~~~vvmVGDqL~TDVlggnr~ 130 (175)
T COG2179 65 VVVVSNNKESRVARAAEKLGVPF------IY-RA--KKPFG----RAFRRALK-EMNLPPEEVVMVGDQLFTDVLGGNRA 130 (175)
T ss_pred EEEEeCCCHHHHHhhhhhcCCce------ee-cc--cCccH----HHHHHHHH-HcCCChhHEEEEcchhhhhhhccccc
Confidence 99999999999999999988553 22 21 11111 01334444 34556 8899999986 56655532
Q ss_pred --Ccccccce
Q 002143 795 --NLIVVERY 802 (960)
Q Consensus 795 --N~I~IkpY 802 (960)
-.|.|+|-
T Consensus 131 G~~tIlV~Pl 140 (175)
T COG2179 131 GMRTILVEPL 140 (175)
T ss_pred CcEEEEEEEe
Confidence 34556555
No 85
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=89.50 E-value=0.45 Score=49.10 Aligned_cols=94 Identities=15% Similarity=0.102 Sum_probs=64.1
Q ss_pred EeeccCHHHHHHHhhc-ceEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCcccCCC-
Q 002143 699 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 776 (960)
Q Consensus 699 VkLRPgL~EFLeeLSk-~YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLGrd- 776 (960)
+.+.||+.++|+.+.+ .|.++|.|++...+++.+++.+.-.+ +|.. +++.++.. ..+.+ ...+..-+. .+|..
T Consensus 91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~~-~~~~~~~~-~~Kp~-~~~~~~~~~-~~~~~~ 165 (222)
T PRK10826 91 RPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRD-YFDA-LASAEKLP-YSKPH-PEVYLNCAA-KLGVDP 165 (222)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchh-cccE-EEEcccCC-CCCCC-HHHHHHHHH-HcCCCH
Confidence 5788999999999985 59999999999999999999887555 6764 66655421 11111 112333333 35666
Q ss_pred CcEEEEcCCCCccccCccCcc
Q 002143 777 SAVVIIDDSVRVWPHNKLNLI 797 (960)
Q Consensus 777 s~VVIVDDsp~vw~~qpdN~I 797 (960)
+.+|+|+|+..-...-...++
T Consensus 166 ~~~~~igDs~~Di~aA~~aG~ 186 (222)
T PRK10826 166 LTCVALEDSFNGMIAAKAARM 186 (222)
T ss_pred HHeEEEcCChhhHHHHHHcCC
Confidence 889999999865543333344
No 86
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=89.10 E-value=0.86 Score=48.96 Aligned_cols=57 Identities=21% Similarity=0.096 Sum_probs=44.8
Q ss_pred CeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHHHHhhcc-eEEEEEcCC
Q 002143 646 KLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FEMHLYTMG 724 (960)
Q Consensus 646 KLTLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFLeeLSk~-YEIvIyTAg 724 (960)
.+.|++||||||+.... ...|...+.|+++.+. +.++|.|.-
T Consensus 4 ~kli~~DlDGTLl~~~~-------------------------------------~~~~~~~~ai~~l~~~Gi~~~iaTgR 46 (273)
T PRK00192 4 KLLVFTDLDGTLLDHHT-------------------------------------YSYEPAKPALKALKEKGIPVIPCTSK 46 (273)
T ss_pred ceEEEEcCcccCcCCCC-------------------------------------cCcHHHHHHHHHHHHCCCEEEEEcCC
Confidence 56899999999997531 0234566888888875 899999999
Q ss_pred cHHHHHHHHHHhcCC
Q 002143 725 NKLYATEMAKVLDPK 739 (960)
Q Consensus 725 treYAd~VLdiLDP~ 739 (960)
...++..+++.|+-.
T Consensus 47 ~~~~~~~~~~~l~l~ 61 (273)
T PRK00192 47 TAAEVEVLRKELGLE 61 (273)
T ss_pred CHHHHHHHHHHcCCC
Confidence 999999999988754
No 87
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=88.90 E-value=0.65 Score=48.58 Aligned_cols=87 Identities=17% Similarity=0.092 Sum_probs=60.6
Q ss_pred EEeeccCHHHHHHHhhcc-eEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCcccCCC
Q 002143 698 WTKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 776 (960)
Q Consensus 698 yVkLRPgL~EFLeeLSk~-YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLGrd 776 (960)
++.+.||+.++|++|.+. +.+.|.|++...++..+++.++-.. +|.. +++.+++. ..+.+ ...+.+-++ .+|..
T Consensus 93 ~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~-~f~~-i~~~~~~~-~~KP~-p~~~~~~~~-~l~~~ 167 (229)
T PRK13226 93 QSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQ-RCAV-LIGGDTLA-ERKPH-PLPLLVAAE-RIGVA 167 (229)
T ss_pred cCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchh-cccE-EEecCcCC-CCCCC-HHHHHHHHH-HhCCC
Confidence 468899999999999865 8999999999999999999887544 5653 55544332 11211 112333343 45666
Q ss_pred -CcEEEEcCCCCcc
Q 002143 777 -SAVVIIDDSVRVW 789 (960)
Q Consensus 777 -s~VVIVDDsp~vw 789 (960)
+.+|+|+|++.-.
T Consensus 168 p~~~l~IGDs~~Di 181 (229)
T PRK13226 168 PTDCVYVGDDERDI 181 (229)
T ss_pred hhhEEEeCCCHHHH
Confidence 8899999997443
No 88
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=88.71 E-value=1.2 Score=44.43 Aligned_cols=75 Identities=21% Similarity=0.240 Sum_probs=48.4
Q ss_pred EeeccCHHHHHHHhhc-ceEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCcccCCC-
Q 002143 699 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 776 (960)
Q Consensus 699 VkLRPgL~EFLeeLSk-~YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLGrd- 776 (960)
+.++|+. -|++|.+ .+.|+|.|+..+..+..+++.+.-.. +|... .. +. ..++.+...+|.+
T Consensus 29 ~~~~~~~--~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~~-~~~~~---~~------k~----~~~~~~~~~~~~~~ 92 (154)
T TIGR01670 29 FNVRDGY--GIRCALKSGIEVAIITGRKAKLVEDRCKTLGITH-LYQGQ---SN------KL----IAFSDILEKLALAP 92 (154)
T ss_pred EechhHH--HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCCE-EEecc---cc------hH----HHHHHHHHHcCCCH
Confidence 4567765 6788875 59999999999999999998887543 44321 00 00 1222222235655
Q ss_pred CcEEEEcCCCCcc
Q 002143 777 SAVVIIDDSVRVW 789 (960)
Q Consensus 777 s~VVIVDDsp~vw 789 (960)
+.++.|-|+..=.
T Consensus 93 ~~~~~vGDs~~D~ 105 (154)
T TIGR01670 93 ENVAYIGDDLIDW 105 (154)
T ss_pred HHEEEECCCHHHH
Confidence 7899998886433
No 89
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=88.35 E-value=0.68 Score=50.81 Aligned_cols=29 Identities=38% Similarity=0.539 Sum_probs=22.4
Q ss_pred hhHHHhhhhcCCCeEEEEeCCCceeeccc
Q 002143 634 RLEEQKKMFSARKLCLVLDLDHTLLNSAK 662 (960)
Q Consensus 634 rL~~q~~lls~kKLTLVLDLDETLVHSs~ 662 (960)
.+.++.+.-+.++..+|||||||++..+.
T Consensus 67 ~~d~~~k~~k~K~~aVvlDlDETvLdNs~ 95 (274)
T COG2503 67 ALDTQAKKKKGKKKAVVLDLDETVLDNSA 95 (274)
T ss_pred HHHhhhccccCCCceEEEecchHhhcCcc
Confidence 34445556678888999999999998764
No 90
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=88.33 E-value=0.69 Score=47.32 Aligned_cols=49 Identities=18% Similarity=0.271 Sum_probs=41.5
Q ss_pred EEeeccCHHHHHHHhhc-ceEEEEEcCCcHHHHHHHHHHhcCCCceeeeee
Q 002143 698 WTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRV 747 (960)
Q Consensus 698 yVkLRPgL~EFLeeLSk-~YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RI 747 (960)
.+.++||+.+||+++.+ .+.++|.|++...++..+++.+.-.. +|..++
T Consensus 83 ~~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~-~~~~~~ 132 (219)
T TIGR00338 83 NLPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDA-AFANRL 132 (219)
T ss_pred cCCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCc-eEeeEE
Confidence 35789999999999987 59999999999999999999877554 666544
No 91
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=88.25 E-value=0.44 Score=50.05 Aligned_cols=94 Identities=18% Similarity=0.039 Sum_probs=62.3
Q ss_pred EeeccCHHHHHHHhhc-ceEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCcccCCC-
Q 002143 699 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 776 (960)
Q Consensus 699 VkLRPgL~EFLeeLSk-~YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLGrd- 776 (960)
+.+.||+.++|+.+.+ .|.++|-|++.+.++..+++.++-.. +|.. +++-++... .+.+ ...|.+=++ .+|.+
T Consensus 92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~~-~fd~-iv~s~~~~~-~KP~-p~~~~~~~~-~~~~~p 166 (224)
T PRK14988 92 AVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLDA-HLDL-LLSTHTFGY-PKED-QRLWQAVAE-HTGLKA 166 (224)
T ss_pred CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcHH-HCCE-EEEeeeCCC-CCCC-HHHHHHHHH-HcCCCh
Confidence 6789999999999986 59999999999999999988766433 6775 554333221 1110 112333343 35666
Q ss_pred CcEEEEcCCCCccccCccCcc
Q 002143 777 SAVVIIDDSVRVWPHNKLNLI 797 (960)
Q Consensus 777 s~VVIVDDsp~vw~~qpdN~I 797 (960)
+.+|+|+|++.-...-...++
T Consensus 167 ~~~l~igDs~~di~aA~~aG~ 187 (224)
T PRK14988 167 ERTLFIDDSEPILDAAAQFGI 187 (224)
T ss_pred HHEEEEcCCHHHHHHHHHcCC
Confidence 889999999754432233444
No 92
>PRK11587 putative phosphatase; Provisional
Probab=87.81 E-value=0.8 Score=47.30 Aligned_cols=86 Identities=15% Similarity=0.076 Sum_probs=58.5
Q ss_pred EEeeccCHHHHHHHhhc-ceEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCcccCCC
Q 002143 698 WTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 776 (960)
Q Consensus 698 yVkLRPgL~EFLeeLSk-~YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLGrd 776 (960)
.+.+.||+.+||+.|.+ .|.++|-|++...++..+++...- . +|. -+++.++... .+. +...+.+-+. .+|..
T Consensus 81 ~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l-~-~~~-~i~~~~~~~~-~KP-~p~~~~~~~~-~~g~~ 154 (218)
T PRK11587 81 GITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGL-P-APE-VFVTAERVKR-GKP-EPDAYLLGAQ-LLGLA 154 (218)
T ss_pred CceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCC-C-Ccc-EEEEHHHhcC-CCC-CcHHHHHHHH-HcCCC
Confidence 46789999999999975 599999999999988887776553 2 343 3555544321 122 1223455554 45665
Q ss_pred -CcEEEEcCCCCcc
Q 002143 777 -SAVVIIDDSVRVW 789 (960)
Q Consensus 777 -s~VVIVDDsp~vw 789 (960)
+.+|+|+|++.-.
T Consensus 155 p~~~l~igDs~~di 168 (218)
T PRK11587 155 PQECVVVEDAPAGV 168 (218)
T ss_pred cccEEEEecchhhh
Confidence 8899999997443
No 93
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=87.74 E-value=0.94 Score=45.71 Aligned_cols=35 Identities=14% Similarity=-0.014 Sum_probs=27.4
Q ss_pred CHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhcC
Q 002143 704 GIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDP 738 (960)
Q Consensus 704 gL~EFLeeLS-k~YEIvIyTAgtreYAd~VLdiLDP 738 (960)
...+.|+++. +-+.++|.|.-....+..+++.+.-
T Consensus 19 ~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~ 54 (254)
T PF08282_consen 19 ETIEALKELQEKGIKLVIATGRSYSSIKRLLKELGI 54 (254)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHTTH
T ss_pred HHHHHHHhhcccceEEEEEccCcccccccccccccc
Confidence 3456777776 6699999999999999888886653
No 94
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=87.72 E-value=0.85 Score=50.69 Aligned_cols=51 Identities=22% Similarity=0.316 Sum_probs=34.0
Q ss_pred eEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHHHHhhc-----ceEEEEE
Q 002143 647 LCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-----LFEMHLY 721 (960)
Q Consensus 647 LTLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFLeeLSk-----~YEIvIy 721 (960)
+.+++|+||||+++.. .-|+..+||+.+.. .+.++++
T Consensus 1 ~~~ifD~DGvL~~g~~--------------------------------------~i~ga~eal~~L~~~~~~~g~~~~fl 42 (321)
T TIGR01456 1 FGFAFDIDGVLFRGKK--------------------------------------PIAGASDALRRLNRNQGQLKIPYIFL 42 (321)
T ss_pred CEEEEeCcCceECCcc--------------------------------------ccHHHHHHHHHHhccccccCCCEEEE
Confidence 4689999999998742 13556677777765 5666777
Q ss_pred cCCc----HHHHHHHHHH
Q 002143 722 TMGN----KLYATEMAKV 735 (960)
Q Consensus 722 TAgt----reYAd~VLdi 735 (960)
|+.. +.|++.+.+.
T Consensus 43 TNn~g~s~~~~~~~l~~~ 60 (321)
T TIGR01456 43 TNGGGFSERARAEEISSL 60 (321)
T ss_pred ecCCCCCHHHHHHHHHHH
Confidence 7664 4556655443
No 95
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=87.37 E-value=0.44 Score=47.34 Aligned_cols=86 Identities=13% Similarity=0.079 Sum_probs=59.1
Q ss_pred EeeccCHHHHHHHhhcceEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCcccCCC-C
Q 002143 699 TKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-S 777 (960)
Q Consensus 699 VkLRPgL~EFLeeLSk~YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLGrd-s 777 (960)
+.+-|+ .++|+.+.+.+.++|-|++.+.+++.+++.+.-.+ ||.. +++.++... .+.+ ...+.+-++ .+|.. +
T Consensus 87 ~~~~~~-~e~L~~L~~~~~l~I~T~~~~~~~~~~l~~~~l~~-~fd~-i~~~~~~~~-~KP~-p~~~~~~~~-~~~~~~~ 160 (188)
T PRK10725 87 VEPLPL-IEVVKAWHGRRPMAVGTGSESAIAEALLAHLGLRR-YFDA-VVAADDVQH-HKPA-PDTFLRCAQ-LMGVQPT 160 (188)
T ss_pred CCCccH-HHHHHHHHhCCCEEEEcCCchHHHHHHHHhCCcHh-HceE-EEehhhccC-CCCC-hHHHHHHHH-HcCCCHH
Confidence 345676 48999998879999999999999999999887654 6874 777665321 1211 112333333 45665 7
Q ss_pred cEEEEcCCCCccc
Q 002143 778 AVVIIDDSVRVWP 790 (960)
Q Consensus 778 ~VVIVDDsp~vw~ 790 (960)
.+|+|+|++.-..
T Consensus 161 ~~l~igDs~~di~ 173 (188)
T PRK10725 161 QCVVFEDADFGIQ 173 (188)
T ss_pred HeEEEeccHhhHH
Confidence 8999999965443
No 96
>PTZ00445 p36-lilke protein; Provisional
Probab=87.31 E-value=1.1 Score=48.34 Aligned_cols=73 Identities=18% Similarity=0.287 Sum_probs=49.4
Q ss_pred HHHhhhHHHhhhhcCCCeEEEEeCCCceee--cccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHH
Q 002143 630 ERTRRLEEQKKMFSARKLCLVLDLDHTLLN--SAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWT 707 (960)
Q Consensus 630 e~akrL~~q~~lls~kKLTLVLDLDETLVH--Ss~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~E 707 (960)
+.++.++. .|...+=+.+++|||.|||- |.- ..+|.. | ...+.-..||.+.+
T Consensus 29 ~~~~~~v~--~L~~~GIk~Va~D~DnTlI~~HsgG--~~~~~~----------~------------~~~~~~~~tpefk~ 82 (219)
T PTZ00445 29 ESADKFVD--LLNECGIKVIASDFDLTMITKHSGG--YIDPDN----------D------------DIRVLTSVTPDFKI 82 (219)
T ss_pred HHHHHHHH--HHHHcCCeEEEecchhhhhhhhccc--ccCCCc----------c------------hhhhhccCCHHHHH
Confidence 44555543 24567778999999999985 421 112210 0 01234568999999
Q ss_pred HHHHhhc-ceEEEEEcCCcHHH
Q 002143 708 FLERASK-LFEMHLYTMGNKLY 728 (960)
Q Consensus 708 FLeeLSk-~YEIvIyTAgtreY 728 (960)
++++|.+ .+.|+|-|-+.+.-
T Consensus 83 ~~~~l~~~~I~v~VVTfSd~~~ 104 (219)
T PTZ00445 83 LGKRLKNSNIKISVVTFSDKEL 104 (219)
T ss_pred HHHHHHHCCCeEEEEEccchhh
Confidence 9999985 69999999998865
No 97
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=87.28 E-value=0.74 Score=53.14 Aligned_cols=86 Identities=14% Similarity=0.138 Sum_probs=62.3
Q ss_pred EeeccCHHHHHHHhhc-ceEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCcccCCC-
Q 002143 699 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 776 (960)
Q Consensus 699 VkLRPgL~EFLeeLSk-~YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLGrd- 776 (960)
+.+.||+.+||+.|.+ .+.+.|.|++.+.|++.+++.++-.. ||.. |++.+++.. .+.+ ...+.+-+. .+|..
T Consensus 215 ~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~-yFd~-Iv~sddv~~-~KP~-Peifl~A~~-~lgl~P 289 (381)
T PLN02575 215 YRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRG-FFSV-IVAAEDVYR-GKPD-PEMFIYAAQ-LLNFIP 289 (381)
T ss_pred CCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHH-HceE-EEecCcCCC-CCCC-HHHHHHHHH-HcCCCc
Confidence 4678999999999975 59999999999999999999887654 7875 776665421 1211 112344444 45765
Q ss_pred CcEEEEcCCCCcc
Q 002143 777 SAVVIIDDSVRVW 789 (960)
Q Consensus 777 s~VVIVDDsp~vw 789 (960)
+.+|+|+|+..-.
T Consensus 290 eecl~IGDS~~DI 302 (381)
T PLN02575 290 ERCIVFGNSNQTV 302 (381)
T ss_pred ccEEEEcCCHHHH
Confidence 8899999987543
No 98
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=87.17 E-value=0.91 Score=49.21 Aligned_cols=86 Identities=19% Similarity=0.136 Sum_probs=58.5
Q ss_pred EeeccCHHHHHHHhhc-ceEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCcccCCC-
Q 002143 699 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 776 (960)
Q Consensus 699 VkLRPgL~EFLeeLSk-~YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLGrd- 776 (960)
+.++||+.++|+.+.+ .+.++|.|++...++..+++.++-.. +|.. +++.+++. ..+.. .. .++.+-+.+|..
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~~-~f~~-i~~~d~~~-~~Kp~-p~-~~~~~~~~~g~~~ 174 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIGR-YFRW-IIGGDTLP-QKKPD-PA-ALLFVMKMAGVPP 174 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcHh-hCeE-EEecCCCC-CCCCC-cH-HHHHHHHHhCCCh
Confidence 5689999999999975 69999999999999999999876543 6764 66554321 11110 00 122222245665
Q ss_pred CcEEEEcCCCCcc
Q 002143 777 SAVVIIDDSVRVW 789 (960)
Q Consensus 777 s~VVIVDDsp~vw 789 (960)
+.+|+|+|+..-.
T Consensus 175 ~~~l~IGD~~~Di 187 (272)
T PRK13223 175 SQSLFVGDSRSDV 187 (272)
T ss_pred hHEEEECCCHHHH
Confidence 8899999996433
No 99
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=87.15 E-value=0.52 Score=46.50 Aligned_cols=82 Identities=20% Similarity=0.278 Sum_probs=54.1
Q ss_pred EeeccCHHHHHHHhhcc-eEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCcccCCC-
Q 002143 699 TKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 776 (960)
Q Consensus 699 VkLRPgL~EFLeeLSk~-YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLGrd- 776 (960)
+.+.||+.+||+.+.+. |.++|.|++ .+++.+++.++-.+ +|.. ++..++... .+.. ...+.+-++ .++..
T Consensus 87 ~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~~-~f~~-v~~~~~~~~-~kp~-~~~~~~~~~-~~~~~~ 159 (185)
T TIGR02009 87 AEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLTD-YFDA-IVDADEVKE-GKPH-PETFLLAAE-LLGVSP 159 (185)
T ss_pred CCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChHH-HCCE-eeehhhCCC-CCCC-hHHHHHHHH-HcCCCH
Confidence 67899999999999864 899999988 78888888766544 6765 454443211 1110 012223233 34655
Q ss_pred CcEEEEcCCCC
Q 002143 777 SAVVIIDDSVR 787 (960)
Q Consensus 777 s~VVIVDDsp~ 787 (960)
+.+|+|+|+..
T Consensus 160 ~~~v~IgD~~~ 170 (185)
T TIGR02009 160 NECVVFEDALA 170 (185)
T ss_pred HHeEEEeCcHh
Confidence 78999999964
No 100
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=87.14 E-value=1.5 Score=46.54 Aligned_cols=59 Identities=29% Similarity=0.210 Sum_probs=48.2
Q ss_pred CCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHHHHh-hcceEEEEEcC
Q 002143 645 RKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERA-SKLFEMHLYTM 723 (960)
Q Consensus 645 kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFLeeL-Sk~YEIvIyTA 723 (960)
..+.|++||||||+..... ..|...+.|+++ .+-+.++|-|-
T Consensus 2 ~~kli~~DlDGTLl~~~~~-------------------------------------i~~~~~~al~~~~~~g~~v~iaTG 44 (264)
T COG0561 2 MIKLLAFDLDGTLLDSNKT-------------------------------------ISPETKEALARLREKGVKVVLATG 44 (264)
T ss_pred CeeEEEEcCCCCccCCCCc-------------------------------------cCHHHHHHHHHHHHCCCEEEEECC
Confidence 3568999999999987520 356667888877 46799999999
Q ss_pred CcHHHHHHHHHHhcCCC
Q 002143 724 GNKLYATEMAKVLDPKG 740 (960)
Q Consensus 724 gtreYAd~VLdiLDP~g 740 (960)
.....+.++++.|...+
T Consensus 45 R~~~~~~~~~~~l~~~~ 61 (264)
T COG0561 45 RPLPDVLSILEELGLDG 61 (264)
T ss_pred CChHHHHHHHHHcCCCc
Confidence 99999999999998876
No 101
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=87.06 E-value=0.82 Score=46.58 Aligned_cols=84 Identities=20% Similarity=0.195 Sum_probs=59.6
Q ss_pred EeeccCHHHHHHHhhcceEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCcccCCC-C
Q 002143 699 TKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-S 777 (960)
Q Consensus 699 VkLRPgL~EFLeeLSk~YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLGrd-s 777 (960)
+...|++.++|+++.+.|.++|.|+|...++...+..+. =..+|.. ++.-++.+ ..+.+ ...|..-+. .+|-+ +
T Consensus 98 ~~~~~~~~~~L~~l~~~~~l~ilTNg~~~~~~~~l~~~g-l~~~Fd~-v~~s~~~g-~~KP~-~~~f~~~~~-~~g~~p~ 172 (229)
T COG1011 98 LPDYPEALEALKELGKKYKLGILTNGARPHQERKLRQLG-LLDYFDA-VFISEDVG-VAKPD-PEIFEYALE-KLGVPPE 172 (229)
T ss_pred CccChhHHHHHHHHHhhccEEEEeCCChHHHHHHHHHcC-Chhhhhe-EEEecccc-cCCCC-cHHHHHHHH-HcCCCcc
Confidence 678899999999999889999999999999999999876 3347876 55444433 22211 112223333 35665 7
Q ss_pred cEEEEcCCCC
Q 002143 778 AVVIIDDSVR 787 (960)
Q Consensus 778 ~VVIVDDsp~ 787 (960)
.+++|||+..
T Consensus 173 ~~l~VgD~~~ 182 (229)
T COG1011 173 EALFVGDSLE 182 (229)
T ss_pred eEEEECCChh
Confidence 8999999964
No 102
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=86.48 E-value=1.2 Score=46.17 Aligned_cols=50 Identities=10% Similarity=0.231 Sum_probs=41.6
Q ss_pred EEeeccCHHHHHHHhhcc-eEEEEEcCCcHHHHHHHHHHhcCCCceeeeee
Q 002143 698 WTKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRV 747 (960)
Q Consensus 698 yVkLRPgL~EFLeeLSk~-YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RI 747 (960)
.+.+|||+.+||+.+.+. +.++|.|++...|++.+++.+.....++.+++
T Consensus 68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~n~~ 118 (214)
T TIGR03333 68 TAEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVEKDRIYCNEA 118 (214)
T ss_pred cCcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCcccEEecee
Confidence 478999999999999874 99999999999999999998865444555443
No 103
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=85.67 E-value=1.7 Score=44.67 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=29.6
Q ss_pred cCHHHHHHHhhcc-eEEEEEcCCcHHHHHHHHHHhcCCC
Q 002143 703 PGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKG 740 (960)
Q Consensus 703 PgL~EFLeeLSk~-YEIvIyTAgtreYAd~VLdiLDP~g 740 (960)
|...+-|+++.+. +.++|.|.-....+.++++.|+..+
T Consensus 21 ~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~~ 59 (215)
T TIGR01487 21 ERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTSG 59 (215)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCCCC
Confidence 4445667777654 8999999999988999998888664
No 104
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=85.67 E-value=1.8 Score=45.87 Aligned_cols=35 Identities=14% Similarity=0.088 Sum_probs=27.6
Q ss_pred CHHHHHHHhhcc-eEEEEEcCCcHHHHHHHHHHhcC
Q 002143 704 GIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDP 738 (960)
Q Consensus 704 gL~EFLeeLSk~-YEIvIyTAgtreYAd~VLdiLDP 738 (960)
...++|+++.+. ..++|.|.-+...+..+++.|.-
T Consensus 19 ~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~ 54 (225)
T TIGR02461 19 PAREALEELKDLGFPIVFVSSKTRAEQEYYREELGV 54 (225)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC
Confidence 356788888865 88999998888888888877764
No 105
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=85.11 E-value=0.62 Score=47.43 Aligned_cols=89 Identities=15% Similarity=0.143 Sum_probs=56.4
Q ss_pred EEEeeccCHHHHHHHhhc-ceEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCcccCC
Q 002143 697 MWTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGM 775 (960)
Q Consensus 697 ~yVkLRPgL~EFLeeLSk-~YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLGr 775 (960)
.+..++||+.++|+.+.+ .|.++|.|++....+..++....--..+|.. +++-+++.. .+.+ ...|.+-++ .+|.
T Consensus 81 ~~~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd~-v~~s~~~~~-~KP~-p~~~~~~~~-~~~~ 156 (199)
T PRK09456 81 VFVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAADH-IYLSQDLGM-RKPE-ARIYQHVLQ-AEGF 156 (199)
T ss_pred HHhccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcCE-EEEecccCC-CCCC-HHHHHHHHH-HcCC
Confidence 346789999999999975 5999999999988766554321111235654 555444332 2221 112333344 4576
Q ss_pred C-CcEEEEcCCCCcc
Q 002143 776 E-SAVVIIDDSVRVW 789 (960)
Q Consensus 776 d-s~VVIVDDsp~vw 789 (960)
. +.+|+|||++.-.
T Consensus 157 ~p~~~l~vgD~~~di 171 (199)
T PRK09456 157 SAADAVFFDDNADNI 171 (199)
T ss_pred ChhHeEEeCCCHHHH
Confidence 6 8899999997543
No 106
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=84.96 E-value=2 Score=46.07 Aligned_cols=59 Identities=20% Similarity=0.145 Sum_probs=40.7
Q ss_pred CCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHHHHhhc-ceEEEEEc
Q 002143 644 ARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYT 722 (960)
Q Consensus 644 ~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFLeeLSk-~YEIvIyT 722 (960)
..++.+++||||||++... .+. |...+-|+++.+ -..++|.|
T Consensus 5 ~~~~lI~~DlDGTLL~~~~--~i~-----------------------------------~~~~~ai~~l~~~Gi~~viaT 47 (271)
T PRK03669 5 QDPLLIFTDLDGTLLDSHT--YDW-----------------------------------QPAAPWLTRLREAQVPVILCS 47 (271)
T ss_pred CCCeEEEEeCccCCcCCCC--cCc-----------------------------------HHHHHHHHHHHHcCCeEEEEc
Confidence 4567899999999998632 111 112345666664 47888888
Q ss_pred CCcHHHHHHHHHHhcCC
Q 002143 723 MGNKLYATEMAKVLDPK 739 (960)
Q Consensus 723 AgtreYAd~VLdiLDP~ 739 (960)
.-....+..+++.|+..
T Consensus 48 GR~~~~i~~~~~~l~~~ 64 (271)
T PRK03669 48 SKTAAEMLPLQQTLGLQ 64 (271)
T ss_pred CCCHHHHHHHHHHhCCC
Confidence 88888888888877653
No 107
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=84.66 E-value=1.7 Score=44.79 Aligned_cols=34 Identities=18% Similarity=0.115 Sum_probs=28.7
Q ss_pred HHHHHHHhhcc-eEEEEEcCCcHHHHHHHHHHhcC
Q 002143 705 IWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDP 738 (960)
Q Consensus 705 L~EFLeeLSk~-YEIvIyTAgtreYAd~VLdiLDP 738 (960)
..+.|+++.+. ..++|.|......+..+++.|.-
T Consensus 21 ~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~ 55 (221)
T TIGR02463 21 AAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGL 55 (221)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC
Confidence 45788888764 89999999999999999998864
No 108
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=84.07 E-value=1.2 Score=48.68 Aligned_cols=96 Identities=21% Similarity=0.227 Sum_probs=59.8
Q ss_pred EeeccCHHHHHHHhhc-ceEEEEEcCCcHHHHHHHHHHhcCCCceeee-eeeecCCCCCCCCCCCCCCccccCCcccCCC
Q 002143 699 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAG-RVISRGDDGDPFDGDERVPKSKDLEGVLGME 776 (960)
Q Consensus 699 VkLRPgL~EFLeeLSk-~YEIvIyTAgtreYAd~VLdiLDP~g~lF~~-RIySRddc~~~~dGder~~yiKDLsrVLGrd 776 (960)
+.+.||+.+||+++.+ .|.++|.|++...++..+++.+.-.+ +|.. .++..+++.. .+.+ ...+.+-+. .+|.+
T Consensus 143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~~-~~~~~~~v~~~~~~~-~KP~-p~~~~~a~~-~~~~~ 218 (286)
T PLN02779 143 LPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGPE-RAQGLDVFAGDDVPK-KKPD-PDIYNLAAE-TLGVD 218 (286)
T ss_pred CCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcccc-ccCceEEEeccccCC-CCCC-HHHHHHHHH-HhCcC
Confidence 5789999999999975 59999999999999999998662111 2321 1334343211 1110 112233333 45666
Q ss_pred -CcEEEEcCCCCccccCccCccc
Q 002143 777 -SAVVIIDDSVRVWPHNKLNLIV 798 (960)
Q Consensus 777 -s~VVIVDDsp~vw~~qpdN~I~ 798 (960)
+.+|+|+|+..-+..-...++.
T Consensus 219 p~~~l~IGDs~~Di~aA~~aG~~ 241 (286)
T PLN02779 219 PSRCVVVEDSVIGLQAAKAAGMR 241 (286)
T ss_pred hHHEEEEeCCHHhHHHHHHcCCE
Confidence 8899999998655433334443
No 109
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=84.02 E-value=1.7 Score=46.53 Aligned_cols=87 Identities=16% Similarity=0.111 Sum_probs=59.6
Q ss_pred EeeccCHHHHHHHhhc-ceEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCcccCC-C
Q 002143 699 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGM-E 776 (960)
Q Consensus 699 VkLRPgL~EFLeeLSk-~YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLGr-d 776 (960)
+.+-||+.++|+.|.+ -|.+.|-|++.+.++..+++.+.-.+ +|...+++.++... .+. +...+.+-+. .+|. .
T Consensus 100 ~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~-~~~d~i~~~~~~~~-~KP-~p~~~~~a~~-~l~~~~ 175 (267)
T PRK13478 100 ATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQG-YRPDHVVTTDDVPA-GRP-YPWMALKNAI-ELGVYD 175 (267)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcC-CCceEEEcCCcCCC-CCC-ChHHHHHHHH-HcCCCC
Confidence 5778999999999975 59999999999999999999766555 33234666554321 121 1113444444 3564 3
Q ss_pred -CcEEEEcCCCCcc
Q 002143 777 -SAVVIIDDSVRVW 789 (960)
Q Consensus 777 -s~VVIVDDsp~vw 789 (960)
+.+|+|+|++.-.
T Consensus 176 ~~e~l~IGDs~~Di 189 (267)
T PRK13478 176 VAACVKVDDTVPGI 189 (267)
T ss_pred CcceEEEcCcHHHH
Confidence 6799999997433
No 110
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=83.87 E-value=2.3 Score=44.89 Aligned_cols=37 Identities=16% Similarity=0.054 Sum_probs=28.7
Q ss_pred cCHHHHHHHhhcc-eEEEEEcCCcHHHHHHHHHHhcCC
Q 002143 703 PGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPK 739 (960)
Q Consensus 703 PgL~EFLeeLSk~-YEIvIyTAgtreYAd~VLdiLDP~ 739 (960)
|...+.|+++.+. +.++|.|......+..+++.|...
T Consensus 19 ~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~ 56 (256)
T TIGR00099 19 PSTKEALAKLREKGIKVVLATGRPYKEVKNILKELGLD 56 (256)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCC
Confidence 3345677777754 899999999988888888877655
No 111
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=83.85 E-value=2.4 Score=42.28 Aligned_cols=50 Identities=14% Similarity=0.185 Sum_probs=42.7
Q ss_pred EeeccCHHHHHHHhhc-ceEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeee
Q 002143 699 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVIS 749 (960)
Q Consensus 699 VkLRPgL~EFLeeLSk-~YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIyS 749 (960)
+.++||+.++|+.+.+ -+.++|.|++...+++.+++.+.... +|...+..
T Consensus 79 ~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~-~~~~~~~~ 129 (201)
T TIGR01491 79 ISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDY-VYSNELVF 129 (201)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCCe-EEEEEEEE
Confidence 6789999999999975 59999999999999999999987654 67665554
No 112
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=83.68 E-value=3.2 Score=43.77 Aligned_cols=58 Identities=24% Similarity=0.257 Sum_probs=38.5
Q ss_pred CeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHHHHhhc-ceEEEEEcCC
Q 002143 646 KLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTMG 724 (960)
Q Consensus 646 KLTLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFLeeLSk-~YEIvIyTAg 724 (960)
.+.+++||||||+.... .+. |...+-|+++.+ -..++|.|.-
T Consensus 3 ~kli~~DlDGTLl~~~~--~i~-----------------------------------~~~~~ai~~~~~~G~~~~iaTGR 45 (272)
T PRK10530 3 YRVIALDLDGTLLTPKK--TIL-----------------------------------PESLEALARAREAGYKVIIVTGR 45 (272)
T ss_pred ccEEEEeCCCceECCCC--ccC-----------------------------------HHHHHHHHHHHHCCCEEEEEcCC
Confidence 35789999999997642 122 223345666654 4778888877
Q ss_pred cHHHHHHHHHHhcCCC
Q 002143 725 NKLYATEMAKVLDPKG 740 (960)
Q Consensus 725 treYAd~VLdiLDP~g 740 (960)
....+..+++.|+..+
T Consensus 46 ~~~~~~~~~~~l~~~~ 61 (272)
T PRK10530 46 HHVAIHPFYQALALDT 61 (272)
T ss_pred ChHHHHHHHHhcCCCC
Confidence 7777777777776543
No 113
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=83.61 E-value=2.2 Score=45.20 Aligned_cols=57 Identities=19% Similarity=0.148 Sum_probs=40.9
Q ss_pred CeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHHHHhhcc-eEEEEEcCC
Q 002143 646 KLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FEMHLYTMG 724 (960)
Q Consensus 646 KLTLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFLeeLSk~-YEIvIyTAg 724 (960)
.+.+++||||||++... .+ -|...+.|+++.+. +.++|.|.-
T Consensus 3 ~kli~~DlDGTLl~~~~--~i-----------------------------------~~~~~~ai~~l~~~G~~~~iaTGR 45 (270)
T PRK10513 3 IKLIAIDMDGTLLLPDH--TI-----------------------------------SPAVKQAIAAARAKGVNVVLTTGR 45 (270)
T ss_pred eEEEEEecCCcCcCCCC--cc-----------------------------------CHHHHHHHHHHHHCCCEEEEecCC
Confidence 35789999999998642 12 22234667777654 888888888
Q ss_pred cHHHHHHHHHHhcCC
Q 002143 725 NKLYATEMAKVLDPK 739 (960)
Q Consensus 725 treYAd~VLdiLDP~ 739 (960)
....+.++++.|...
T Consensus 46 ~~~~~~~~~~~l~~~ 60 (270)
T PRK10513 46 PYAGVHRYLKELHME 60 (270)
T ss_pred ChHHHHHHHHHhCCC
Confidence 888888888877654
No 114
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=83.32 E-value=1.7 Score=44.04 Aligned_cols=82 Identities=16% Similarity=0.145 Sum_probs=53.5
Q ss_pred EeeccCHHHHHHHhhcc-eEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCcccCCC-
Q 002143 699 TKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 776 (960)
Q Consensus 699 VkLRPgL~EFLeeLSk~-YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLGrd- 776 (960)
+.+.||+.++|++|.+. |.++|.|++...+ ..+++.++-.+ +|.. ++.-++++ ..+.+ ...+.+-++ .+|.+
T Consensus 104 ~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~~-~~~l~~~~l~~-~fd~-i~~s~~~~-~~KP~-~~~~~~~~~-~~~~~~ 177 (203)
T TIGR02252 104 WQVYPDAIKLLKDLRERGLILGVISNFDSRL-RGLLEALGLLE-YFDF-VVTSYEVG-AEKPD-PKIFQEALE-RAGISP 177 (203)
T ss_pred ceeCcCHHHHHHHHHHCCCEEEEEeCCchhH-HHHHHHCCcHH-hcce-EEeecccC-CCCCC-HHHHHHHHH-HcCCCh
Confidence 36789999999999865 9999999998764 66777665433 6764 55444332 11211 112333333 45666
Q ss_pred CcEEEEcCCC
Q 002143 777 SAVVIIDDSV 786 (960)
Q Consensus 777 s~VVIVDDsp 786 (960)
+.+|+|+|+.
T Consensus 178 ~~~~~IgD~~ 187 (203)
T TIGR02252 178 EEALHIGDSL 187 (203)
T ss_pred hHEEEECCCc
Confidence 8899999985
No 115
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=83.11 E-value=1.9 Score=47.96 Aligned_cols=52 Identities=12% Similarity=0.165 Sum_probs=43.2
Q ss_pred EEeeccCHHHHHHHhhcc-eEEEEEcCCcHHHHHHHHHHh---cCCCceeeeeeee
Q 002143 698 WTKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVL---DPKGVLFAGRVIS 749 (960)
Q Consensus 698 yVkLRPgL~EFLeeLSk~-YEIvIyTAgtreYAd~VLdiL---DP~g~lF~~RIyS 749 (960)
-+.+|||+.+||+.|.+. +.++|+|+|...+++.+++.+ ++...++++++..
T Consensus 119 ~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~~~IvSN~L~f 174 (277)
T TIGR01544 119 DVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPNVKVVSNFMDF 174 (277)
T ss_pred CCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcCceEEeeeEEE
Confidence 478999999999999765 999999999999999999953 3555677777654
No 116
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=82.99 E-value=1.7 Score=44.18 Aligned_cols=81 Identities=19% Similarity=0.121 Sum_probs=55.8
Q ss_pred eeccCHHHHHHHhhcc-eEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCcccCCC-C
Q 002143 700 KLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-S 777 (960)
Q Consensus 700 kLRPgL~EFLeeLSk~-YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLGrd-s 777 (960)
+..|+..++|+.+.+. +.++|.|++.+.+++.+++.+.-.. +|.. +++.++.. . +.. ...+.+-++ .+|.+ +
T Consensus 106 ~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~-~f~~-~~~~~~~~-~-KP~-p~~~~~~~~-~~~~~~~ 179 (197)
T TIGR01548 106 ETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLEI-LFPV-QIWMEDCP-P-KPN-PEPLILAAK-ALGVEAC 179 (197)
T ss_pred ccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCchh-hCCE-EEeecCCC-C-CcC-HHHHHHHHH-HhCcCcc
Confidence 3455669999999864 9999999999999999999887654 6764 55555422 1 211 112333343 35655 7
Q ss_pred cEEEEcCCC
Q 002143 778 AVVIIDDSV 786 (960)
Q Consensus 778 ~VVIVDDsp 786 (960)
.+|+|+|++
T Consensus 180 ~~i~vGD~~ 188 (197)
T TIGR01548 180 HAAMVGDTV 188 (197)
T ss_pred cEEEEeCCH
Confidence 899999985
No 117
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=82.75 E-value=1.7 Score=44.46 Aligned_cols=85 Identities=15% Similarity=0.085 Sum_probs=58.7
Q ss_pred EeeccCHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhcCC-CceeeeeeeecCCCCCCCCCCCCCCccccCCcccCCC
Q 002143 699 TKLRPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPK-GVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 776 (960)
Q Consensus 699 VkLRPgL~EFLeeLS-k~YEIvIyTAgtreYAd~VLdiLDP~-g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLGrd 776 (960)
+.+.||+.+||+++. +.|.+.|.|++...++..+++.++-. +.+|.. +++.++-. ..+.+ ...+.+=+. .+|..
T Consensus 86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~~-i~~~~~~~-~~KP~-p~~~~~a~~-~~~~~ 161 (220)
T TIGR03351 86 PVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVDA-VVCPSDVA-AGRPA-PDLILRAME-LTGVQ 161 (220)
T ss_pred CccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccCCE-EEcCCcCC-CCCCC-HHHHHHHHH-HcCCC
Confidence 479999999999997 56999999999999999999988765 257764 66554311 11110 112223333 34542
Q ss_pred --CcEEEEcCCCC
Q 002143 777 --SAVVIIDDSVR 787 (960)
Q Consensus 777 --s~VVIVDDsp~ 787 (960)
+.+|+|+|++.
T Consensus 162 ~~~~~~~igD~~~ 174 (220)
T TIGR03351 162 DVQSVAVAGDTPN 174 (220)
T ss_pred ChhHeEEeCCCHH
Confidence 68999999973
No 118
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=82.67 E-value=2.1 Score=46.65 Aligned_cols=101 Identities=13% Similarity=0.113 Sum_probs=60.6
Q ss_pred CCeEEEEeCCCceeecccCCCCCCchhhhhhhhh---ccccCCCcceeE--e---eccceEEEeeccCHHHHHHHhhc-c
Q 002143 645 RKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKE---EQDREKPHRHLF--R---FPHMGMWTKLRPGIWTFLERASK-L 715 (960)
Q Consensus 645 kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~e---e~D~~~P~~~~F--~---l~~~~~yVkLRPgL~EFLeeLSk-~ 715 (960)
....+|+|+|+||+-....- ..+.+..+....- ..+........| . +....-+...-|.+-+|++.+++ .
T Consensus 19 ~~tLvvfDiDdTLi~~~~~l-g~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~lie~~~~~~i~~lq~~~ 97 (252)
T PF11019_consen 19 QDTLVVFDIDDTLITPKQPL-GSPAWYQWQLGKLQKRGKSEYKAVECIFEEWLSLIFELRKMELIESDVPNIINSLQNKG 97 (252)
T ss_pred CCeEEEEEcchhhhcCcccc-CCchhHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhhcceEEcchhHHHHHHHHHHCC
Confidence 77889999999999776211 1233333322110 000000000111 0 01123456678999999999995 5
Q ss_pred eEEEEEcCCcHHHHHHHHHHhcCCCceeeee
Q 002143 716 FEMHLYTMGNKLYATEMAKVLDPKGVLFAGR 746 (960)
Q Consensus 716 YEIvIyTAgtreYAd~VLdiLDP~g~lF~~R 746 (960)
.-++.+|+....|...-++.|---|--|..+
T Consensus 98 ~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~ 128 (252)
T PF11019_consen 98 IPVIALTARGPNMEDWTLRELKSLGIDFSSS 128 (252)
T ss_pred CcEEEEcCCChhhHHHHHHHHHHCCCCcccc
Confidence 9999999999999999888775444444443
No 119
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=82.23 E-value=3.5 Score=42.49 Aligned_cols=57 Identities=21% Similarity=0.264 Sum_probs=41.1
Q ss_pred eEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHHHHhhc-ceEEEEEcCCc
Q 002143 647 LCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTMGN 725 (960)
Q Consensus 647 LTLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFLeeLSk-~YEIvIyTAgt 725 (960)
+.|++||||||+.... . +.|...+-|+++.+ -..++|.|.-.
T Consensus 4 kli~~DlDGTLl~~~~--~-----------------------------------i~~~~~~al~~l~~~G~~~~iaTGR~ 46 (230)
T PRK01158 4 KAIAIDIDGTITDKDR--R-----------------------------------LSLKAVEAIRKAEKLGIPVILATGNV 46 (230)
T ss_pred eEEEEecCCCcCCCCC--c-----------------------------------cCHHHHHHHHHHHHCCCEEEEEcCCc
Confidence 5789999999996532 1 23344456777764 47888888888
Q ss_pred HHHHHHHHHHhcCCC
Q 002143 726 KLYATEMAKVLDPKG 740 (960)
Q Consensus 726 reYAd~VLdiLDP~g 740 (960)
...+.++++.|...+
T Consensus 47 ~~~~~~~~~~l~~~~ 61 (230)
T PRK01158 47 LCFARAAAKLIGTSG 61 (230)
T ss_pred hHHHHHHHHHhCCCC
Confidence 888888888887554
No 120
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=81.99 E-value=2.3 Score=43.10 Aligned_cols=36 Identities=25% Similarity=0.177 Sum_probs=29.6
Q ss_pred ccCHHHHHHHhhcc-eEEEEEcCCcHHHHHHHHHHhc
Q 002143 702 RPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLD 737 (960)
Q Consensus 702 RPgL~EFLeeLSk~-YEIvIyTAgtreYAd~VLdiLD 737 (960)
.|.+.+.|+++.+. ..++|.|.....++..+++.++
T Consensus 19 ~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~~ 55 (204)
T TIGR01484 19 SPETIEALERLREAGVKVVLVTGRSLAEIKELLKQLP 55 (204)
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhCC
Confidence 45667888888866 8899999999999999988653
No 121
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=81.89 E-value=0.9 Score=46.31 Aligned_cols=87 Identities=25% Similarity=0.158 Sum_probs=51.3
Q ss_pred EEeeccCHHHHHHHhhc-ceEEEEEcCCcHHH--HHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCcccC
Q 002143 698 WTKLRPGIWTFLERASK-LFEMHLYTMGNKLY--ATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLG 774 (960)
Q Consensus 698 yVkLRPgL~EFLeeLSk-~YEIvIyTAgtreY--Ad~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLG 774 (960)
.+.+.||+.+||++|.+ .|.++|.|++...+ +...+..++- ..+|.. ++.-+++. ..+.+ ...|.+-++ .+|
T Consensus 92 ~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l-~~~fd~-v~~s~~~~-~~KP~-p~~~~~~~~-~~g 166 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDI-MALFDA-VVESCLEG-LRKPD-PRIYQLMLE-RLG 166 (211)
T ss_pred ccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhh-HhhCCE-EEEeeecC-CCCCC-HHHHHHHHH-HcC
Confidence 46789999999999986 59999999987655 2222222221 135654 55433322 11211 112333344 456
Q ss_pred CC-CcEEEEcCCCCcc
Q 002143 775 ME-SAVVIIDDSVRVW 789 (960)
Q Consensus 775 rd-s~VVIVDDsp~vw 789 (960)
.. +.+|+|||+..-.
T Consensus 167 ~~~~~~l~i~D~~~di 182 (211)
T TIGR02247 167 VAPEECVFLDDLGSNL 182 (211)
T ss_pred CCHHHeEEEcCCHHHH
Confidence 66 7899999986433
No 122
>PLN02940 riboflavin kinase
Probab=81.69 E-value=1.2 Score=51.02 Aligned_cols=84 Identities=15% Similarity=0.105 Sum_probs=57.7
Q ss_pred EeeccCHHHHHHHhhcc-eEEEEEcCCcHHHHHHHHH-HhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCcccCCC
Q 002143 699 TKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAK-VLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 776 (960)
Q Consensus 699 VkLRPgL~EFLeeLSk~-YEIvIyTAgtreYAd~VLd-iLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLGrd 776 (960)
+.+.||+.++|+.|.+. +.+.|-|++.+.++..+++ .++-. .+|.. +++.+++.. .+. ++..+.+-++ .+|-.
T Consensus 92 ~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~-~~Fd~-ii~~d~v~~-~KP-~p~~~~~a~~-~lgv~ 166 (382)
T PLN02940 92 IKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWK-ESFSV-IVGGDEVEK-GKP-SPDIFLEAAK-RLNVE 166 (382)
T ss_pred CCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChH-hhCCE-EEehhhcCC-CCC-CHHHHHHHHH-HcCCC
Confidence 56789999999999755 9999999999999998876 44433 36765 666665421 111 1112333343 34655
Q ss_pred -CcEEEEcCCCC
Q 002143 777 -SAVVIIDDSVR 787 (960)
Q Consensus 777 -s~VVIVDDsp~ 787 (960)
+++|+|+|+..
T Consensus 167 p~~~l~VGDs~~ 178 (382)
T PLN02940 167 PSNCLVIEDSLP 178 (382)
T ss_pred hhHEEEEeCCHH
Confidence 78999999984
No 123
>PRK10444 UMP phosphatase; Provisional
Probab=81.59 E-value=2.6 Score=45.53 Aligned_cols=52 Identities=21% Similarity=0.270 Sum_probs=34.2
Q ss_pred EEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHHHHhhc-ceEEEEEcCCcH
Q 002143 648 CLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTMGNK 726 (960)
Q Consensus 648 TLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFLeeLSk-~YEIvIyTAgtr 726 (960)
.+++||||||++... .-|+..+||+.+.+ -..+++.|+...
T Consensus 3 ~v~~DlDGtL~~~~~--------------------------------------~~p~a~~~l~~L~~~g~~~~~~Tn~~~ 44 (248)
T PRK10444 3 NVICDIDGVLMHDNV--------------------------------------AVPGAAEFLHRILDKGLPLVLLTNYPS 44 (248)
T ss_pred EEEEeCCCceEeCCe--------------------------------------eCccHHHHHHHHHHCCCeEEEEeCCCC
Confidence 689999999998741 13566667776664 466777777666
Q ss_pred HHHHHHHHHhc
Q 002143 727 LYATEMAKVLD 737 (960)
Q Consensus 727 eYAd~VLdiLD 737 (960)
.-+..+++.|.
T Consensus 45 ~~~~~~~~~l~ 55 (248)
T PRK10444 45 QTGQDLANRFA 55 (248)
T ss_pred CCHHHHHHHHH
Confidence 55555555443
No 124
>PRK05601 DNA polymerase III subunit epsilon; Validated
Probab=81.42 E-value=2.8 Score=48.56 Aligned_cols=74 Identities=18% Similarity=0.134 Sum_probs=62.8
Q ss_pred hhcCceeeeeecccCCCCCCCChhHHHHHHHhCCEEecccCCCccEEEecCC--CCHHHHHHHhCCCcEEcHHHHHHHHH
Q 002143 869 ILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSL--GTDKVNWALSTGRFVVHPGWVEASAL 946 (960)
Q Consensus 869 ILkGcvIvFSG~fP~~~~npe~~~LwklAe~LGAtVssdVd~kVTHLVAss~--gT~Kv~~Alk~GI~IVSpdWLedC~~ 946 (960)
+-.|..|+|+|-+-. +...|.+.+-..|=.|+.+++..+.-|||+.. .+.|...|..+||++|+-.=+.+++.
T Consensus 294 lv~Gm~v~~~~e~~~-----~~d~li~~~~~agL~y~~~~~r~tslvv~n~~~~~~gk~~~a~~~gipl~~d~~fl~~~~ 368 (377)
T PRK05601 294 LVAGMEVVVAPEITM-----DPDIIIQAIVRAGLAYSEKLTRQTSVVVCNQTRDLDGKAMHAQRKGIPLLSDVAFLAAVE 368 (377)
T ss_pred cccCcEEEEeCCccC-----CHHHHHHHHHHccchhhhccccceeEEEeCCCCCccchhhhhhhcCCCccCHHHHHHHHH
Confidence 568999999985432 34678888999999999999999999999974 46799999999999999988888876
Q ss_pred h
Q 002143 947 L 947 (960)
Q Consensus 947 ~ 947 (960)
.
T Consensus 369 ~ 369 (377)
T PRK05601 369 R 369 (377)
T ss_pred H
Confidence 4
No 125
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=81.29 E-value=1.8 Score=46.13 Aligned_cols=85 Identities=18% Similarity=0.184 Sum_probs=56.2
Q ss_pred EEeeccCHHHHHHHhhc-ceEEEEEcCCcHHHHHHHHHHhc---CCCceeeeeeeecCCCCCCCCCCCCCCccccCCccc
Q 002143 698 WTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLD---PKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVL 773 (960)
Q Consensus 698 yVkLRPgL~EFLeeLSk-~YEIvIyTAgtreYAd~VLdiLD---P~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVL 773 (960)
...+.|++.++|+++.+ -|.++|+|++...+...+++.++ -.. +|.. +|... .+ .+. +...|.+-++ .+
T Consensus 93 ~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~-~f~~-~fd~~-~g--~KP-~p~~y~~i~~-~l 165 (220)
T TIGR01691 93 TSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLTP-YFSG-YFDTT-VG--LKT-EAQSYVKIAG-QL 165 (220)
T ss_pred ccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchhh-hcce-EEEeC-cc--cCC-CHHHHHHHHH-Hh
Confidence 35689999999999975 69999999999999988887653 222 4543 33211 11 111 1123444454 35
Q ss_pred CCC-CcEEEEcCCCCcc
Q 002143 774 GME-SAVVIIDDSVRVW 789 (960)
Q Consensus 774 Grd-s~VVIVDDsp~vw 789 (960)
|.+ +.+++|+|+..-.
T Consensus 166 gv~p~e~lfVgDs~~Di 182 (220)
T TIGR01691 166 GSPPREILFLSDIINEL 182 (220)
T ss_pred CcChhHEEEEeCCHHHH
Confidence 666 8899999997433
No 126
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=81.24 E-value=2.9 Score=44.80 Aligned_cols=78 Identities=19% Similarity=0.270 Sum_probs=48.4
Q ss_pred cCCCeEEEEeCCCceeecccCC--------CCCC-chhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHHHHhh
Q 002143 643 SARKLCLVLDLDHTLLNSAKFH--------EVDP-VHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERAS 713 (960)
Q Consensus 643 s~kKLTLVLDLDETLVHSs~~~--------eldP-~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFLeeLS 713 (960)
..++..+||||||||+....+. .+++ ..++|+. .... ..=|+.-+|++.+.
T Consensus 69 ~~~~~avv~DIDeTvLsn~~y~~~~~~~~~~~~~~~w~~wv~-----------------~~~~---~aip~a~~l~~~~~ 128 (229)
T PF03767_consen 69 ADKPPAVVFDIDETVLSNSPYYAYLIFGGESFSPEDWDEWVA-----------------SGKA---PAIPGALELYNYAR 128 (229)
T ss_dssp HTSEEEEEEESBTTTEEHHHHHHHHHHHTHHH-CCHHHHHHH-----------------CTGG---EEETTHHHHHHHHH
T ss_pred cCCCcEEEEECCcccccCHHHHHHHhhccCCCChHHHHHHHh-----------------cccC---cccHHHHHHHHHHH
Confidence 3789999999999999654210 0011 0111111 0011 35688999999998
Q ss_pred cc-eEEEEEcCCcHHHHHHHHHHhcCCC
Q 002143 714 KL-FEMHLYTMGNKLYATEMAKVLDPKG 740 (960)
Q Consensus 714 k~-YEIvIyTAgtreYAd~VLdiLDP~g 740 (960)
+. ++|++-|.-....-+.-++.|.-.|
T Consensus 129 ~~G~~V~~iT~R~~~~r~~T~~nL~~~G 156 (229)
T PF03767_consen 129 SRGVKVFFITGRPESQREATEKNLKKAG 156 (229)
T ss_dssp HTTEEEEEEEEEETTCHHHHHHHHHHHT
T ss_pred HCCCeEEEEecCCchhHHHHHHHHHHcC
Confidence 65 9999999877665555555554434
No 127
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=80.99 E-value=2.1 Score=46.88 Aligned_cols=81 Identities=17% Similarity=0.189 Sum_probs=55.9
Q ss_pred EeeccCHHHHHHHhhc-ceEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCcccCCC-
Q 002143 699 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 776 (960)
Q Consensus 699 VkLRPgL~EFLeeLSk-~YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLGrd- 776 (960)
+.+.||+.++|++|.+ .+.+.|.|++.+.++..+++.++-.. +|.. +++.+.. . .+ ...+.+-+. .++.+
T Consensus 141 ~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~~-~F~~-vi~~~~~-~-~k---~~~~~~~l~-~~~~~p 212 (273)
T PRK13225 141 LQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRS-LFSV-VQAGTPI-L-SK---RRALSQLVA-REGWQP 212 (273)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChh-heEE-EEecCCC-C-CC---HHHHHHHHH-HhCcCh
Confidence 5678999999999985 58999999999999999999988654 6764 5443321 0 00 001222222 23544
Q ss_pred CcEEEEcCCCC
Q 002143 777 SAVVIIDDSVR 787 (960)
Q Consensus 777 s~VVIVDDsp~ 787 (960)
+.+|+|+|++.
T Consensus 213 ~~~l~IGDs~~ 223 (273)
T PRK13225 213 AAVMYVGDETR 223 (273)
T ss_pred hHEEEECCCHH
Confidence 78999999974
No 128
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=80.37 E-value=2.6 Score=44.26 Aligned_cols=50 Identities=12% Similarity=0.140 Sum_probs=43.5
Q ss_pred EeeccCHHHHHHHhhcceEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeee
Q 002143 699 TKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVIS 749 (960)
Q Consensus 699 VkLRPgL~EFLeeLSk~YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIyS 749 (960)
+.++||+.+||+++.+.+.++|-|++...|++++++.|+-+. +|.+++..
T Consensus 67 i~l~pga~ell~~lk~~~~~~IVS~~~~~~~~~il~~lgi~~-~~an~l~~ 116 (203)
T TIGR02137 67 LKPLEGAVEFVDWLRERFQVVILSDTFYEFSQPLMRQLGFPT-LLCHKLEI 116 (203)
T ss_pred CCCCccHHHHHHHHHhCCeEEEEeCChHHHHHHHHHHcCCch-hhceeeEE
Confidence 578999999999999888999999999999999999988654 67766554
No 129
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=80.33 E-value=3.2 Score=41.93 Aligned_cols=30 Identities=13% Similarity=0.151 Sum_probs=24.1
Q ss_pred eccCHHHHHHHhhcc-eEEEEEcCCcHHHHH
Q 002143 701 LRPGIWTFLERASKL-FEMHLYTMGNKLYAT 730 (960)
Q Consensus 701 LRPgL~EFLeeLSk~-YEIvIyTAgtreYAd 730 (960)
..|++.++++++.+. |.+++.|.....-+.
T Consensus 28 ~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~ 58 (157)
T smart00775 28 THPGVAKLYRDIQNNGYKILYLTARPIGQAD 58 (157)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEcCCcHHHHH
Confidence 479999999999864 888888887766665
No 130
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=79.95 E-value=2.5 Score=42.69 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=41.3
Q ss_pred EEeeccCHHHHHHHhhcceEEEEEcCCcHHHHHHHHHHhcCCCceeeeee
Q 002143 698 WTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRV 747 (960)
Q Consensus 698 yVkLRPgL~EFLeeLSk~YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RI 747 (960)
.+.++||+.+||+.+.+.+.++|.|++...|++.+++.++-.. +|.+++
T Consensus 66 ~~~~~pg~~e~L~~L~~~~~~~IvS~~~~~~~~~~l~~~gl~~-~f~~~~ 114 (205)
T PRK13582 66 TLDPLPGAVEFLDWLRERFQVVILSDTFYEFAGPLMRQLGWPT-LFCHSL 114 (205)
T ss_pred hCCCCCCHHHHHHHHHhcCCEEEEeCCcHHHHHHHHHHcCCch-hhcceE
Confidence 4667899999999998779999999999999999999887543 565544
No 131
>PHA02597 30.2 hypothetical protein; Provisional
Probab=79.52 E-value=1.5 Score=44.27 Aligned_cols=95 Identities=13% Similarity=0.134 Sum_probs=56.8
Q ss_pred EEeeccCHHHHHHHhhcceEEEEEcCCcHHHHHHHHHHhcCCC---ceeeeeeeecCCCCCCCCCCCCCCccccCCcccC
Q 002143 698 WTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKG---VLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLG 774 (960)
Q Consensus 698 yVkLRPgL~EFLeeLSk~YEIvIyTAgtreYAd~VLdiLDP~g---~lF~~RIySRddc~~~~dGder~~yiKDLsrVLG 774 (960)
.+.+.||+.++|++|.+.|.+++-|++.......+++.+.-.+ .+|.. +++-+++ .+. ...+.+-++ .+|
T Consensus 72 ~~~~~pG~~e~L~~L~~~~~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~~-i~~~~~~----~~k-p~~~~~a~~-~~~ 144 (197)
T PHA02597 72 YLSAYDDALDVINKLKEDYDFVAVTALGDSIDALLNRQFNLNALFPGAFSE-VLMCGHD----ESK-EKLFIKAKE-KYG 144 (197)
T ss_pred hccCCCCHHHHHHHHHhcCCEEEEeCCccchhHHHHhhCCHHHhCCCcccE-EEEeccC----ccc-HHHHHHHHH-HhC
Confidence 3678999999999999888888878776665555666553322 14543 4443332 111 112222333 356
Q ss_pred CCCcEEEEcCCCCccccCccC--ccccc
Q 002143 775 MESAVVIIDDSVRVWPHNKLN--LIVVE 800 (960)
Q Consensus 775 rds~VVIVDDsp~vw~~qpdN--~I~Ik 800 (960)
.+.+|+|||+..-...-... +|.+-
T Consensus 145 -~~~~v~vgDs~~di~aA~~a~~Gi~~i 171 (197)
T PHA02597 145 -DRVVCFVDDLAHNLDAAHEALSQLPVI 171 (197)
T ss_pred -CCcEEEeCCCHHHHHHHHHHHcCCcEE
Confidence 56799999998665443344 55543
No 132
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=79.39 E-value=2.3 Score=46.24 Aligned_cols=83 Identities=24% Similarity=0.283 Sum_probs=56.3
Q ss_pred EeeccCHHHHHHHhhcceEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCC--------CccccCC
Q 002143 699 TKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERV--------PKSKDLE 770 (960)
Q Consensus 699 VkLRPgL~EFLeeLSk~YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~--------~yiKDLs 770 (960)
+|.-|-|++||-.|.+.+ .+|||++.+..|..+++.|.-.. .|.. |++-+ ..+..+.. .+-|=+.
T Consensus 99 LkPD~~LRnlLL~l~~r~-k~~FTNa~k~HA~r~Lk~LGieD-cFeg-ii~~e----~~np~~~~~vcKP~~~afE~a~k 171 (244)
T KOG3109|consen 99 LKPDPVLRNLLLSLKKRR-KWIFTNAYKVHAIRILKKLGIED-CFEG-IICFE----TLNPIEKTVVCKPSEEAFEKAMK 171 (244)
T ss_pred cCCCHHHHHHHHhCcccc-EEEecCCcHHHHHHHHHHhChHH-hccc-eeEee----ccCCCCCceeecCCHHHHHHHHH
Confidence 788888999999999888 99999999999999999998765 3664 44311 11110000 1112222
Q ss_pred cccCCC--CcEEEEcCCCCcc
Q 002143 771 GVLGME--SAVVIIDDSVRVW 789 (960)
Q Consensus 771 rVLGrd--s~VVIVDDsp~vw 789 (960)
+.|-+ ++++++||+...-
T Consensus 172 -~agi~~p~~t~FfDDS~~NI 191 (244)
T KOG3109|consen 172 -VAGIDSPRNTYFFDDSERNI 191 (244)
T ss_pred -HhCCCCcCceEEEcCchhhH
Confidence 34544 7999999996433
No 133
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=79.14 E-value=3.9 Score=41.87 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=22.1
Q ss_pred HHHHHHhhcc-eEEEEEcCCcHHHHHHHHHHhc
Q 002143 706 WTFLERASKL-FEMHLYTMGNKLYATEMAKVLD 737 (960)
Q Consensus 706 ~EFLeeLSk~-YEIvIyTAgtreYAd~VLdiLD 737 (960)
.+-|+++.+. ..++|.|--....+.++++.|.
T Consensus 21 ~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~ 53 (225)
T TIGR01482 21 LEAIRKAESVGIPVVLVTGNSVQFARALAKLIG 53 (225)
T ss_pred HHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhC
Confidence 3456666544 7788888777777777777776
No 134
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=79.09 E-value=1.6 Score=46.06 Aligned_cols=84 Identities=19% Similarity=0.167 Sum_probs=63.8
Q ss_pred EeeccCHHHHHHHhhcc-eEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCcccCCC-
Q 002143 699 TKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 776 (960)
Q Consensus 699 VkLRPgL~EFLeeLSk~-YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLGrd- 776 (960)
++..||+.+||+.|... .-+.+-|.+.+..+..+++.+.-.. +|...++ .++.... +. .+..|.+-.. .||.+
T Consensus 85 ~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~-~f~~~v~-~~dv~~~-KP-~Pd~yL~Aa~-~Lgv~P 159 (221)
T COG0637 85 LKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLD-YFDVIVT-ADDVARG-KP-APDIYLLAAE-RLGVDP 159 (221)
T ss_pred CCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccChh-hcchhcc-HHHHhcC-CC-CCHHHHHHHH-HcCCCh
Confidence 68999999999999987 9999999999999999998887765 6887554 3432211 11 1224666676 46776
Q ss_pred CcEEEEcCCCC
Q 002143 777 SAVVIIDDSVR 787 (960)
Q Consensus 777 s~VVIVDDsp~ 787 (960)
.+.|+|+|++.
T Consensus 160 ~~CvviEDs~~ 170 (221)
T COG0637 160 EECVVVEDSPA 170 (221)
T ss_pred HHeEEEecchh
Confidence 89999999973
No 135
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=78.93 E-value=4.2 Score=43.39 Aligned_cols=57 Identities=18% Similarity=0.161 Sum_probs=37.6
Q ss_pred eEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHHHHhhcc-eEEEEEcCCc
Q 002143 647 LCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FEMHLYTMGN 725 (960)
Q Consensus 647 LTLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFLeeLSk~-YEIvIyTAgt 725 (960)
+.+++||||||+.... .++ |...+-|+++.+. ..++|.|.-.
T Consensus 3 kli~~DlDGTLl~~~~--~i~-----------------------------------~~~~~ai~~l~~~G~~~~iaTGR~ 45 (272)
T PRK15126 3 RLAAFDMDGTLLMPDH--HLG-----------------------------------EKTLSTLARLRERDITLTFATGRH 45 (272)
T ss_pred cEEEEeCCCcCcCCCC--cCC-----------------------------------HHHHHHHHHHHHCCCEEEEECCCC
Confidence 4789999999997532 122 2233456666543 6777777777
Q ss_pred HHHHHHHHHHhcCCC
Q 002143 726 KLYATEMAKVLDPKG 740 (960)
Q Consensus 726 reYAd~VLdiLDP~g 740 (960)
...+.++++.|+..+
T Consensus 46 ~~~~~~~~~~l~~~~ 60 (272)
T PRK15126 46 VLEMQHILGALSLDA 60 (272)
T ss_pred HHHHHHHHHHcCCCC
Confidence 777777777766543
No 136
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=78.64 E-value=2.5 Score=43.85 Aligned_cols=38 Identities=13% Similarity=0.294 Sum_probs=35.2
Q ss_pred EeeccCHHHHHHHhhc-ceEEEEEcCCcHHHHHHHHHHh
Q 002143 699 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVL 736 (960)
Q Consensus 699 VkLRPgL~EFLeeLSk-~YEIvIyTAgtreYAd~VLdiL 736 (960)
+.++||+.+||+++.+ -+.++|.|++...|++.+++.+
T Consensus 73 ~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~ 111 (219)
T PRK09552 73 AEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL 111 (219)
T ss_pred CCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh
Confidence 6899999999999985 4999999999999999999876
No 137
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=78.61 E-value=4 Score=40.06 Aligned_cols=49 Identities=20% Similarity=0.331 Sum_probs=40.8
Q ss_pred EeeccCHHHHHHHhhc-ceEEEEEcCCcHHHHHHHHHHhcCCCceeeeeee
Q 002143 699 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVI 748 (960)
Q Consensus 699 VkLRPgL~EFLeeLSk-~YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIy 748 (960)
+.++|++.++|+++.+ .+.++|.|++.+.|++.+++.+.-. .+|..++.
T Consensus 72 ~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~-~~~~~~~~ 121 (177)
T TIGR01488 72 VALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGID-DVFANRLE 121 (177)
T ss_pred CCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCc-hheeeeEE
Confidence 5689999999999975 4899999999999999999988654 35665543
No 138
>PLN02645 phosphoglycolate phosphatase
Probab=78.54 E-value=3.4 Score=45.77 Aligned_cols=54 Identities=15% Similarity=0.145 Sum_probs=39.5
Q ss_pred CeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHHHHhhc-ceEEEEEcCC
Q 002143 646 KLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTMG 724 (960)
Q Consensus 646 KLTLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFLeeLSk-~YEIvIyTAg 724 (960)
-.++++|+||||++... .=||..++|+++.+ -..+++.|+.
T Consensus 28 ~~~~~~D~DGtl~~~~~--------------------------------------~~~ga~e~l~~lr~~g~~~~~~TN~ 69 (311)
T PLN02645 28 VETFIFDCDGVIWKGDK--------------------------------------LIEGVPETLDMLRSMGKKLVFVTNN 69 (311)
T ss_pred CCEEEEeCcCCeEeCCc--------------------------------------cCcCHHHHHHHHHHCCCEEEEEeCC
Confidence 45889999999997531 12778899998874 6889999998
Q ss_pred cHHHHHHHHHHhc
Q 002143 725 NKLYATEMAKVLD 737 (960)
Q Consensus 725 treYAd~VLdiLD 737 (960)
...-...+++.|.
T Consensus 70 ~~~~~~~~~~~l~ 82 (311)
T PLN02645 70 STKSRAQYGKKFE 82 (311)
T ss_pred CCCCHHHHHHHHH
Confidence 7555555555544
No 139
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=78.49 E-value=4.6 Score=42.92 Aligned_cols=34 Identities=21% Similarity=0.082 Sum_probs=27.8
Q ss_pred HHHHHHHhhcc-eEEEEEcCCcHHHHHHHHHHhcC
Q 002143 705 IWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDP 738 (960)
Q Consensus 705 L~EFLeeLSk~-YEIvIyTAgtreYAd~VLdiLDP 738 (960)
..++|+++.+. +.++|.|.-....+..+++.++.
T Consensus 21 ~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~~~ 55 (256)
T TIGR01486 21 AKEVLERLQELGIPVIPCTSKTAAEVEYLRKELGL 55 (256)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC
Confidence 46788888865 88999998888888888888764
No 140
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=77.84 E-value=3.1 Score=48.38 Aligned_cols=83 Identities=10% Similarity=0.052 Sum_probs=57.1
Q ss_pred EeeccCHHHHHHHhhc-ceEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCcccCCCC
Q 002143 699 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGMES 777 (960)
Q Consensus 699 VkLRPgL~EFLeeLSk-~YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLGrds 777 (960)
+.+.||+.++|+++.+ .+.+.|.|++.+.|+..+++.++-.. ||.. +++.++... .+ ....+.+-+.+ ++ .+
T Consensus 329 ~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~-~f~~-i~~~d~v~~--~~-kP~~~~~al~~-l~-~~ 401 (459)
T PRK06698 329 GALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQ-WVTE-TFSIEQINS--LN-KSDLVKSILNK-YD-IK 401 (459)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHh-hcce-eEecCCCCC--CC-CcHHHHHHHHh-cC-cc
Confidence 5789999999999974 59999999999999999999887654 6765 565443210 01 01123333332 22 26
Q ss_pred cEEEEcCCCCc
Q 002143 778 AVVIIDDSVRV 788 (960)
Q Consensus 778 ~VVIVDDsp~v 788 (960)
.+|+|.|++.=
T Consensus 402 ~~v~VGDs~~D 412 (459)
T PRK06698 402 EAAVVGDRLSD 412 (459)
T ss_pred eEEEEeCCHHH
Confidence 79999999743
No 141
>PRK10976 putative hydrolase; Provisional
Probab=77.67 E-value=5.1 Score=42.44 Aligned_cols=56 Identities=20% Similarity=0.167 Sum_probs=35.4
Q ss_pred eEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHHHHhhc-ceEEEEEcCCc
Q 002143 647 LCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTMGN 725 (960)
Q Consensus 647 LTLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFLeeLSk-~YEIvIyTAgt 725 (960)
+.+++||||||++... .+.+ ...+-|+++.+ -..++|.|.-.
T Consensus 3 kli~~DlDGTLl~~~~--~is~-----------------------------------~~~~ai~~l~~~G~~~~iaTGR~ 45 (266)
T PRK10976 3 QVVASDLDGTLLSPDH--TLSP-----------------------------------YAKETLKLLTARGIHFVFATGRH 45 (266)
T ss_pred eEEEEeCCCCCcCCCC--cCCH-----------------------------------HHHHHHHHHHHCCCEEEEEcCCC
Confidence 5789999999997642 2222 12344555543 36677777766
Q ss_pred HHHHHHHHHHhcCC
Q 002143 726 KLYATEMAKVLDPK 739 (960)
Q Consensus 726 reYAd~VLdiLDP~ 739 (960)
...+.++++.|+..
T Consensus 46 ~~~~~~~~~~l~~~ 59 (266)
T PRK10976 46 HVDVGQIRDNLEIK 59 (266)
T ss_pred hHHHHHHHHhcCCC
Confidence 66666666666544
No 142
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=77.08 E-value=4.3 Score=43.83 Aligned_cols=55 Identities=18% Similarity=0.169 Sum_probs=36.8
Q ss_pred EEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHHHHhhcc-eEEEEEcCCcH
Q 002143 648 CLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FEMHLYTMGNK 726 (960)
Q Consensus 648 TLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFLeeLSk~-YEIvIyTAgtr 726 (960)
++++||||||++..... + ..-|+..+||+++.+. ..+++.|+...
T Consensus 3 ~i~~D~DGtl~~~~~~~------~----------------------------~~~~~a~~al~~l~~~G~~~~~~Tn~~~ 48 (257)
T TIGR01458 3 GVLLDISGVLYISDAKS------G----------------------------VAVPGSQEAVKRLRGASVKVRFVTNTTK 48 (257)
T ss_pred EEEEeCCCeEEeCCCcc------c----------------------------CcCCCHHHHHHHHHHCCCeEEEEECCCC
Confidence 78999999999874200 0 0247888999998864 88999997555
Q ss_pred HHHHHHHHHh
Q 002143 727 LYATEMAKVL 736 (960)
Q Consensus 727 eYAd~VLdiL 736 (960)
.=...+.+.|
T Consensus 49 ~~~~~~~~~l 58 (257)
T TIGR01458 49 ESKQDLLERL 58 (257)
T ss_pred CCHHHHHHHH
Confidence 5333333333
No 143
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=76.57 E-value=4.6 Score=43.85 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=18.2
Q ss_pred ccCHHHHHHHhhc-ceEEEEEcCCc
Q 002143 702 RPGIWTFLERASK-LFEMHLYTMGN 725 (960)
Q Consensus 702 RPgL~EFLeeLSk-~YEIvIyTAgt 725 (960)
-|+..++|+++.+ ...+++.|+..
T Consensus 20 ~~ga~e~l~~L~~~g~~~~~~Tnns 44 (279)
T TIGR01452 20 VPGAPELLDRLARAGKAALFVTNNS 44 (279)
T ss_pred CcCHHHHHHHHHHCCCeEEEEeCCC
Confidence 3677888888875 47888888854
No 144
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=76.47 E-value=2.5 Score=41.73 Aligned_cols=82 Identities=18% Similarity=0.206 Sum_probs=52.3
Q ss_pred EeeccCHHHHHHHhhc-ceEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCcccCCC-
Q 002143 699 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 776 (960)
Q Consensus 699 VkLRPgL~EFLeeLSk-~YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLGrd- 776 (960)
+.+.||+.++|++|.+ .+.++|-|++. .+..+++.++-.. +|.. ++..++-. ..+. ++..+.+-++ .++.+
T Consensus 86 ~~~~pg~~~~L~~L~~~g~~~~i~s~~~--~~~~~l~~~~l~~-~f~~-~~~~~~~~-~~kp-~p~~~~~~~~-~~~~~~ 158 (185)
T TIGR01990 86 ADVLPGIKNLLDDLKKNNIKIALASASK--NAPTVLEKLGLID-YFDA-IVDPAEIK-KGKP-DPEIFLAAAE-GLGVSP 158 (185)
T ss_pred cccCccHHHHHHHHHHCCCeEEEEeCCc--cHHHHHHhcCcHh-hCcE-EEehhhcC-CCCC-ChHHHHHHHH-HcCCCH
Confidence 4678999999999975 58999999864 3567777776543 5764 55433211 1111 1112334444 35666
Q ss_pred CcEEEEcCCCC
Q 002143 777 SAVVIIDDSVR 787 (960)
Q Consensus 777 s~VVIVDDsp~ 787 (960)
+.+|+|+|++.
T Consensus 159 ~~~v~vgD~~~ 169 (185)
T TIGR01990 159 SECIGIEDAQA 169 (185)
T ss_pred HHeEEEecCHH
Confidence 78999999963
No 145
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=76.30 E-value=9.4 Score=42.70 Aligned_cols=50 Identities=12% Similarity=0.029 Sum_probs=34.7
Q ss_pred ccCHHHHHHHhhc-ceEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecC
Q 002143 702 RPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRG 751 (960)
Q Consensus 702 RPgL~EFLeeLSk-~YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIySRd 751 (960)
=|+.-+|++++.+ -+.|++-|.-....-+.=++.|--.|--.-.+++=|+
T Consensus 147 lp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~~~~LiLR~ 197 (275)
T TIGR01680 147 LPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYHTWEKLILKD 197 (275)
T ss_pred ChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCCCcceeeecC
Confidence 4788899999974 5999999998877666666666655621123566564
No 146
>PLN02954 phosphoserine phosphatase
Probab=75.00 E-value=6.4 Score=40.49 Aligned_cols=50 Identities=20% Similarity=0.331 Sum_probs=40.9
Q ss_pred EeeccCHHHHHHHhhc-ceEEEEEcCCcHHHHHHHHHHhcCCC-ceeeeeee
Q 002143 699 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKG-VLFAGRVI 748 (960)
Q Consensus 699 VkLRPgL~EFLeeLSk-~YEIvIyTAgtreYAd~VLdiLDP~g-~lF~~RIy 748 (960)
..++||+.+||+.+.+ .+.++|-|++.+.|++.+++.++-.. .+|..++.
T Consensus 83 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~~~~~ 134 (224)
T PLN02954 83 PRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIFANQIL 134 (224)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhhEEEeEEE
Confidence 5688999999999976 48999999999999999999876542 36765443
No 147
>PLN02811 hydrolase
Probab=74.58 E-value=2.8 Score=43.50 Aligned_cols=86 Identities=10% Similarity=0.023 Sum_probs=53.2
Q ss_pred EeeccCHHHHHHHhhc-ceEEEEEcCCcHHHHHH-HHHHhcCCCceeeeeeeecC--CCCCCCCCCCCCCccccCCcccC
Q 002143 699 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATE-MAKVLDPKGVLFAGRVISRG--DDGDPFDGDERVPKSKDLEGVLG 774 (960)
Q Consensus 699 VkLRPgL~EFLeeLSk-~YEIvIyTAgtreYAd~-VLdiLDP~g~lF~~RIySRd--dc~~~~dGder~~yiKDLsrVLG 774 (960)
+.+.||+.+||+.|.+ .|.++|-|++.+.+... +.+...-. .+|.. +++.+ ++.. .+. +...|.+=+.+ ++
T Consensus 77 ~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~-~~f~~-i~~~~~~~~~~-~KP-~p~~~~~a~~~-~~ 151 (220)
T PLN02811 77 SDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELF-SLMHH-VVTGDDPEVKQ-GKP-APDIFLAAARR-FE 151 (220)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHH-hhCCE-EEECChhhccC-CCC-CcHHHHHHHHH-hC
Confidence 5678999999999986 59999999999876654 33222211 25654 56555 4321 111 11134444442 33
Q ss_pred ---CC-CcEEEEcCCCCcc
Q 002143 775 ---ME-SAVVIIDDSVRVW 789 (960)
Q Consensus 775 ---rd-s~VVIVDDsp~vw 789 (960)
.. +.+|+|+|+..-.
T Consensus 152 ~~~~~~~~~v~IgDs~~di 170 (220)
T PLN02811 152 DGPVDPGKVLVFEDAPSGV 170 (220)
T ss_pred CCCCCccceEEEeccHhhH
Confidence 55 7899999998544
No 148
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=73.81 E-value=11 Score=39.88 Aligned_cols=108 Identities=22% Similarity=0.270 Sum_probs=64.6
Q ss_pred CeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHHHHhhc-ceEEEEEcC-
Q 002143 646 KLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTM- 723 (960)
Q Consensus 646 KLTLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFLeeLSk-~YEIvIyTA- 723 (960)
.++|+||.||||+--..- .++. + . ...+.||+.+=|..+.+ -|-++|+|+
T Consensus 5 ~k~lflDRDGtin~d~~~-yv~~----~--------------~---------~~~~~~g~i~al~~l~~~gy~lVvvTNQ 56 (181)
T COG0241 5 QKALFLDRDGTINIDKGD-YVDS----L--------------D---------DFQFIPGVIPALLKLQRAGYKLVVVTNQ 56 (181)
T ss_pred CcEEEEcCCCceecCCCc-ccCc----H--------------H---------HhccCccHHHHHHHHHhCCCeEEEEECC
Confidence 678999999999953210 0110 0 0 12368999999999975 599999999
Q ss_pred ---Cc--------HHHHHHHHHHhcCCCceeeeeeeecCCC---CCCCCCCCCCCccccCCc---ccCCC-CcEEEEcCC
Q 002143 724 ---GN--------KLYATEMAKVLDPKGVLFAGRVISRGDD---GDPFDGDERVPKSKDLEG---VLGME-SAVVIIDDS 785 (960)
Q Consensus 724 ---gt--------reYAd~VLdiLDP~g~lF~~RIySRddc---~~~~dGder~~yiKDLsr---VLGrd-s~VVIVDDs 785 (960)
++ ..+-+.|++.|--.|.-|...+|+.++- |.+.+ +..+=|.. -++.+ .+.++|=|+
T Consensus 57 sGi~rgyf~~~~f~~~~~~m~~~l~~~gv~id~i~~Cph~p~~~c~cRK-----P~~gm~~~~~~~~~iD~~~s~~VGD~ 131 (181)
T COG0241 57 SGIGRGYFTEADFDKLHNKMLKILASQGVKIDGILYCPHHPEDNCDCRK-----PKPGMLLSALKEYNIDLSRSYVVGDR 131 (181)
T ss_pred CCccccCccHHHHHHHHHHHHHHHHHcCCccceEEECCCCCCCCCcccC-----CChHHHHHHHHHhCCCccceEEecCc
Confidence 22 2333446667777777787766664421 22222 21111111 12345 678888888
Q ss_pred C
Q 002143 786 V 786 (960)
Q Consensus 786 p 786 (960)
.
T Consensus 132 ~ 132 (181)
T COG0241 132 L 132 (181)
T ss_pred H
Confidence 5
No 149
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=73.63 E-value=6.1 Score=42.41 Aligned_cols=14 Identities=29% Similarity=0.494 Sum_probs=12.2
Q ss_pred EEEEeCCCceeecc
Q 002143 648 CLVLDLDHTLLNSA 661 (960)
Q Consensus 648 TLVLDLDETLVHSs 661 (960)
.+++||||||++..
T Consensus 3 ~~~~D~DGtl~~~~ 16 (249)
T TIGR01457 3 GYLIDLDGTMYKGK 16 (249)
T ss_pred EEEEeCCCceEcCC
Confidence 68999999999864
No 150
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair]
Probab=73.52 E-value=12 Score=46.92 Aligned_cols=62 Identities=29% Similarity=0.385 Sum_probs=45.0
Q ss_pred HHHHhCCEEecccC------CCccEEEecCC--CCHHH--HHHHh--CCCcEEcHHHHHHHHHhccCCCCCCCC
Q 002143 896 TAEQFGAVCTKHID------DQVTHVVANSL--GTDKV--NWALS--TGRFVVHPGWVEASALLYRRANEQDFA 957 (960)
Q Consensus 896 lAe~LGAtVssdVd------~kVTHLVAss~--gT~Kv--~~Alk--~GI~IVSpdWLedC~~~wkRvDEs~Yl 957 (960)
.+..+|+.+...-. .++||+|+.-. .+.+. +.|.+ ...+||.+.|+.+|+.....++|..|.
T Consensus 808 ~~k~~g~~i~~~~~~~~~~~~~~t~~v~~~i~~~h~~~~~~~~~~lt~~rkv~~~~wv~~s~~~~~~~~e~~~~ 881 (881)
T KOG0966|consen 808 KLKNFGGRITDAQSECNNIGAKYTHCVLRCIDEDHEKIKEQKKASLTIKRKVVAPSWVDHSINENCLLPEEDFP 881 (881)
T ss_pred HHHHhcceeeeccchhhhcccceeeeeeeecchHHHHHHHHHHHHhcccccccCHHHHHHhhcccccCccccCC
Confidence 46777999875543 36899999732 23332 23332 234999999999999999999999984
No 151
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=73.48 E-value=2.1 Score=44.02 Aligned_cols=30 Identities=13% Similarity=0.156 Sum_probs=26.2
Q ss_pred EeeccCHHHHHHHhhcceEEEEEcCCcHHH
Q 002143 699 TKLRPGIWTFLERASKLFEMHLYTMGNKLY 728 (960)
Q Consensus 699 VkLRPgL~EFLeeLSk~YEIvIyTAgtreY 728 (960)
+..-||.++-+++|-+.|+|||-|++..-|
T Consensus 67 L~V~p~aq~v~keLt~~y~vYivtaamdhp 96 (180)
T COG4502 67 LGVQPFAQTVLKELTSIYNVYIVTAAMDHP 96 (180)
T ss_pred cCccccHHHHHHHHHhhheEEEEEeccCCc
Confidence 667899999999999999999999995444
No 152
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=72.77 E-value=9.6 Score=39.04 Aligned_cols=60 Identities=18% Similarity=0.140 Sum_probs=38.7
Q ss_pred cceEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCcccCCC-CcEEEEcCCCC
Q 002143 714 KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVR 787 (960)
Q Consensus 714 k~YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLGrd-s~VVIVDDsp~ 787 (960)
+.++++|.|.....++..+++.+.-.. +|.. +. .+. ..++.+-..+|.+ +.+++|-|+..
T Consensus 63 ~Gi~v~I~T~~~~~~v~~~l~~lgl~~-~f~g--------~~-~k~----~~l~~~~~~~gl~~~ev~~VGDs~~ 123 (183)
T PRK09484 63 SGIEVAIITGRKSKLVEDRMTTLGITH-LYQG--------QS-NKL----IAFSDLLEKLAIAPEQVAYIGDDLI 123 (183)
T ss_pred CCCEEEEEeCCCcHHHHHHHHHcCCce-eecC--------CC-cHH----HHHHHHHHHhCCCHHHEEEECCCHH
Confidence 579999999999999999999886432 3321 11 000 1222322245666 78999988863
No 153
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=72.72 E-value=1.3 Score=43.70 Aligned_cols=77 Identities=13% Similarity=0.135 Sum_probs=53.7
Q ss_pred EeeccCHHHHHHHhhcceEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCcccCCC-C
Q 002143 699 TKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-S 777 (960)
Q Consensus 699 VkLRPgL~EFLeeLSk~YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLGrd-s 777 (960)
+.++||+.++|+. +.|.|++.+.+...+++.+.-.. +|.. +++-++.. ..+.+ ...|.+-++ .+|.+ +
T Consensus 89 ~~~~~g~~~~L~~------~~i~Tn~~~~~~~~~l~~~~l~~-~fd~-v~~~~~~~-~~KP~-p~~f~~~~~-~~~~~p~ 157 (175)
T TIGR01493 89 LPPWPDSAAALAR------VAILSNASHWAFDQFAQQAGLPW-YFDR-AFSVDTVR-AYKPD-PVVYELVFD-TVGLPPD 157 (175)
T ss_pred CCCCCchHHHHHH------HhhhhCCCHHHHHHHHHHCCCHH-HHhh-hccHhhcC-CCCCC-HHHHHHHHH-HHCCCHH
Confidence 5689999999994 78999999999999999876543 6764 66555422 12221 112344444 45766 8
Q ss_pred cEEEEcCCC
Q 002143 778 AVVIIDDSV 786 (960)
Q Consensus 778 ~VVIVDDsp 786 (960)
.+|+|+|+.
T Consensus 158 ~~l~vgD~~ 166 (175)
T TIGR01493 158 RVLMVAAHQ 166 (175)
T ss_pred HeEeEecCh
Confidence 899999994
No 154
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=72.47 E-value=5 Score=43.66 Aligned_cols=60 Identities=18% Similarity=0.121 Sum_probs=40.6
Q ss_pred CCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHHHHhhc--ceEEEEEc
Q 002143 645 RKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK--LFEMHLYT 722 (960)
Q Consensus 645 kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFLeeLSk--~YEIvIyT 722 (960)
+++.|++|+||||+.... +|.. ..+-|.+.+-|+.|.+ ...++|.|
T Consensus 13 ~~~li~~D~DGTLl~~~~----~p~~----------------------------~~i~~~~~~~L~~L~~~~g~~v~i~S 60 (266)
T PRK10187 13 ANYAWFFDLDGTLAEIKP----HPDQ----------------------------VVVPDNILQGLQLLATANDGALALIS 60 (266)
T ss_pred CCEEEEEecCCCCCCCCC----Cccc----------------------------ccCCHHHHHHHHHHHhCCCCcEEEEe
Confidence 368899999999997542 2211 1134677788888886 46778887
Q ss_pred CCcHHHHHHHHHHh
Q 002143 723 MGNKLYATEMAKVL 736 (960)
Q Consensus 723 AgtreYAd~VLdiL 736 (960)
--...-+..+++.+
T Consensus 61 GR~~~~~~~~~~~~ 74 (266)
T PRK10187 61 GRSMVELDALAKPY 74 (266)
T ss_pred CCCHHHHHHhcCcc
Confidence 77777666665444
No 155
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=71.56 E-value=6.8 Score=40.78 Aligned_cols=60 Identities=22% Similarity=0.273 Sum_probs=43.8
Q ss_pred hcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHHHHhhcceE---E
Q 002143 642 FSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFE---M 718 (960)
Q Consensus 642 ls~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFLeeLSk~YE---I 718 (960)
...+=..||+|+|+||+.-.. . .+-|.+.+.|+++.+.|- |
T Consensus 37 k~~Gik~li~DkDNTL~~~~~--------~----------------------------~i~~~~~~~~~~l~~~~~~~~v 80 (168)
T PF09419_consen 37 KKKGIKALIFDKDNTLTPPYE--------D----------------------------EIPPEYAEWLNELKKQFGKDRV 80 (168)
T ss_pred hhcCceEEEEcCCCCCCCCCc--------C----------------------------cCCHHHHHHHHHHHHHCCCCeE
Confidence 345667899999999985431 0 134566778888887653 9
Q ss_pred EEEcCC-------cHHHHHHHHHHhc
Q 002143 719 HLYTMG-------NKLYATEMAKVLD 737 (960)
Q Consensus 719 vIyTAg-------treYAd~VLdiLD 737 (960)
+|++++ ...-|+.+-+.|.
T Consensus 81 ~IvSNsaGs~~d~~~~~a~~~~~~lg 106 (168)
T PF09419_consen 81 LIVSNSAGSSDDPDGERAEALEKALG 106 (168)
T ss_pred EEEECCCCcccCccHHHHHHHHHhhC
Confidence 999998 4677788888887
No 156
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=70.81 E-value=5.2 Score=51.75 Aligned_cols=83 Identities=12% Similarity=0.169 Sum_probs=59.0
Q ss_pred eccCHHHHHHHhhc-ceEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCcccCCC-Cc
Q 002143 701 LRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SA 778 (960)
Q Consensus 701 LRPgL~EFLeeLSk-~YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLGrd-s~ 778 (960)
+.||+.+||++|.+ -|.+.|.|++...+++.+++.++-...+|.. +++.+++. ..+.+ ...|.+-++ .+|.. ..
T Consensus 162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~Fd~-iv~~~~~~-~~KP~-Pe~~~~a~~-~lgv~p~e 237 (1057)
T PLN02919 162 GFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMFDA-IVSADAFE-NLKPA-PDIFLAAAK-ILGVPTSE 237 (1057)
T ss_pred cCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHCCE-EEECcccc-cCCCC-HHHHHHHHH-HcCcCccc
Confidence 58999999999975 5999999999999999999987754446765 66555432 12211 113444444 45665 78
Q ss_pred EEEEcCCCC
Q 002143 779 VVIIDDSVR 787 (960)
Q Consensus 779 VVIVDDsp~ 787 (960)
+|+|+|++.
T Consensus 238 ~v~IgDs~~ 246 (1057)
T PLN02919 238 CVVIEDALA 246 (1057)
T ss_pred EEEEcCCHH
Confidence 999999973
No 157
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=70.58 E-value=2.3 Score=50.62 Aligned_cols=117 Identities=20% Similarity=0.191 Sum_probs=61.0
Q ss_pred hhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeecc---ceEEEeeccCHHHHHHHhhcc-e
Q 002143 641 MFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPH---MGMWTKLRPGIWTFLERASKL-F 716 (960)
Q Consensus 641 lls~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~---~~~yVkLRPgL~EFLeeLSk~-Y 716 (960)
+....|++||||||+||+--.... |- ..-+++.. ...| =-+++|.+.+.+. +
T Consensus 217 ~~g~~kK~LVLDLDNTLWGGVIGe--dG------------------v~GI~Ls~~~~G~~f----k~fQ~~Ik~l~kqGV 272 (574)
T COG3882 217 MSGKSKKALVLDLDNTLWGGVIGE--DG------------------VDGIRLSNSAEGEAF----KTFQNFIKGLKKQGV 272 (574)
T ss_pred hhCcccceEEEecCCccccccccc--cc------------------ccceeecCCCCchhH----HHHHHHHHHHHhccE
Confidence 345789999999999999765210 00 00011110 0000 0135566666643 7
Q ss_pred EEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCC----CCCCCCCCCCCccccCCcccCCC-CcEEEEcCCCCcccc
Q 002143 717 EMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDD----GDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPH 791 (960)
Q Consensus 717 EIvIyTAgtreYAd~VLdiLDP~g~lF~~RIySRddc----~~~~dGder~~yiKDLsrVLGrd-s~VVIVDDsp~vw~~ 791 (960)
-+.|++..+..-|.+|... -|+ -|+..++- ++|-+- ...++-+.+.|+-. ...|++||+|.-...
T Consensus 273 lLav~SKN~~~da~evF~k-hp~------MiLkeedfa~~~iNW~~K---~eNirkIAkklNlg~dSmvFiDD~p~ErE~ 342 (574)
T COG3882 273 LLAVCSKNTEKDAKEVFRK-HPD------MILKEEDFAVFQINWDPK---AENIRKIAKKLNLGLDSMVFIDDNPAEREL 342 (574)
T ss_pred EEEEecCCchhhHHHHHhh-CCC------eEeeHhhhhhheecCCcc---hhhHHHHHHHhCCCccceEEecCCHHHHHH
Confidence 7889998888888887753 221 23333221 122210 01122222234444 568899999865543
No 158
>PLN03017 trehalose-phosphatase
Probab=69.69 E-value=7.5 Score=45.01 Aligned_cols=64 Identities=17% Similarity=0.161 Sum_probs=45.2
Q ss_pred hhhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHHHHhhcceEE
Q 002143 639 KKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEM 718 (960)
Q Consensus 639 ~~lls~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFLeeLSk~YEI 718 (960)
......+++.|+||+||||+--.. +|. ....-|.+.+-|++|.+.+.+
T Consensus 104 ~~~~~~k~~llflD~DGTL~Piv~----~p~----------------------------~a~i~~~~~~aL~~La~~~~v 151 (366)
T PLN03017 104 MEASRGKQIVMFLDYDGTLSPIVD----DPD----------------------------KAFMSSKMRRTVKKLAKCFPT 151 (366)
T ss_pred HHHhcCCCeEEEEecCCcCcCCcC----Ccc----------------------------cccCCHHHHHHHHHHhcCCcE
Confidence 345677899999999999993211 111 012346777889999988999
Q ss_pred EEEcCCcHHHHHHHHH
Q 002143 719 HLYTMGNKLYATEMAK 734 (960)
Q Consensus 719 vIyTAgtreYAd~VLd 734 (960)
+|-|--...-+..++.
T Consensus 152 aIvSGR~~~~l~~~~~ 167 (366)
T PLN03017 152 AIVTGRCIDKVYNFVK 167 (366)
T ss_pred EEEeCCCHHHHHHhhc
Confidence 9998877777666643
No 159
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=69.52 E-value=7.3 Score=43.28 Aligned_cols=55 Identities=20% Similarity=0.165 Sum_probs=39.2
Q ss_pred CCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHHHHhhcc-eEEEEEc
Q 002143 644 ARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FEMHLYT 722 (960)
Q Consensus 644 ~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFLeeLSk~-YEIvIyT 722 (960)
.+.-+..+||||||++... .=||..+||+++.+. -.+++-|
T Consensus 6 ~~y~~~l~DlDGvl~~G~~--------------------------------------~ipga~e~l~~L~~~g~~~iflT 47 (269)
T COG0647 6 DKYDGFLFDLDGVLYRGNE--------------------------------------AIPGAAEALKRLKAAGKPVIFLT 47 (269)
T ss_pred hhcCEEEEcCcCceEeCCc--------------------------------------cCchHHHHHHHHHHcCCeEEEEe
Confidence 3455789999999998742 247888899988866 7788888
Q ss_pred CCcHHHHHHHHHHh
Q 002143 723 MGNKLYATEMAKVL 736 (960)
Q Consensus 723 AgtreYAd~VLdiL 736 (960)
++...-.+.+.+.|
T Consensus 48 Nn~~~s~~~~~~~L 61 (269)
T COG0647 48 NNSTRSREVVAARL 61 (269)
T ss_pred CCCCCCHHHHHHHH
Confidence 87665444444433
No 160
>PTZ00174 phosphomannomutase; Provisional
Probab=68.79 E-value=10 Score=40.52 Aligned_cols=17 Identities=35% Similarity=0.528 Sum_probs=14.4
Q ss_pred CCeEEEEeCCCceeecc
Q 002143 645 RKLCLVLDLDHTLLNSA 661 (960)
Q Consensus 645 kKLTLVLDLDETLVHSs 661 (960)
..+.+++||||||+++.
T Consensus 4 ~~klia~DlDGTLL~~~ 20 (247)
T PTZ00174 4 KKTILLFDVDGTLTKPR 20 (247)
T ss_pred CCeEEEEECcCCCcCCC
Confidence 35679999999999875
No 161
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=67.86 E-value=6.8 Score=41.65 Aligned_cols=33 Identities=21% Similarity=0.272 Sum_probs=21.9
Q ss_pred cCHHHHHHHhhcc-eEEEEEcCCc----HHHHHHHHHH
Q 002143 703 PGIWTFLERASKL-FEMHLYTMGN----KLYATEMAKV 735 (960)
Q Consensus 703 PgL~EFLeeLSk~-YEIvIyTAgt----reYAd~VLdi 735 (960)
|+..++|+.+.+. +.+++.|++. ..|++.+.++
T Consensus 17 ~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~ 54 (236)
T TIGR01460 17 PGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSL 54 (236)
T ss_pred cCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4667888888754 7788887544 5566666553
No 162
>PLN02423 phosphomannomutase
Probab=67.36 E-value=9.9 Score=40.86 Aligned_cols=18 Identities=22% Similarity=0.287 Sum_probs=14.0
Q ss_pred CCCeEEEEeCCCceeecc
Q 002143 644 ARKLCLVLDLDHTLLNSA 661 (960)
Q Consensus 644 ~kKLTLVLDLDETLVHSs 661 (960)
..|+.+++||||||++..
T Consensus 5 ~~~~i~~~D~DGTLl~~~ 22 (245)
T PLN02423 5 KPGVIALFDVDGTLTAPR 22 (245)
T ss_pred ccceEEEEeccCCCcCCC
Confidence 345667799999999764
No 163
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=66.78 E-value=10 Score=40.59 Aligned_cols=51 Identities=16% Similarity=0.266 Sum_probs=39.9
Q ss_pred EeeccCHHHHHHHhhcc-eEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeee
Q 002143 699 TKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVIS 749 (960)
Q Consensus 699 VkLRPgL~EFLeeLSk~-YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIyS 749 (960)
+++|||..+|.+++.++ -.++|-++|...|..+++..|--+..+...-+++
T Consensus 72 i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~s 123 (220)
T COG4359 72 IKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVS 123 (220)
T ss_pred cccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEee
Confidence 88999999999999976 7899999999999999998665333333333444
No 164
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=65.74 E-value=10 Score=40.14 Aligned_cols=15 Identities=53% Similarity=0.786 Sum_probs=13.0
Q ss_pred CeEEEEeCCCceeec
Q 002143 646 KLCLVLDLDHTLLNS 660 (960)
Q Consensus 646 KLTLVLDLDETLVHS 660 (960)
++.|+.||||||+.+
T Consensus 1 ~~li~tDlDGTLl~~ 15 (249)
T TIGR01485 1 RLLLVSDLDNTLVDH 15 (249)
T ss_pred CeEEEEcCCCcCcCC
Confidence 468999999999974
No 165
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=65.57 E-value=14 Score=41.79 Aligned_cols=35 Identities=11% Similarity=0.203 Sum_probs=23.5
Q ss_pred HHHHHHHhhcc-eEEEEEcCCcHHHHHHHHHHhcCC
Q 002143 705 IWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPK 739 (960)
Q Consensus 705 L~EFLeeLSk~-YEIvIyTAgtreYAd~VLdiLDP~ 739 (960)
..+-|+++.+. ..|++.|.-+..=...+.+.|.-.
T Consensus 23 a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~ 58 (302)
T PRK12702 23 ARQALAALERRSIPLVLYSLRTRAQLEHLCRQLRLE 58 (302)
T ss_pred HHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCC
Confidence 34567777654 778888877766666677777644
No 166
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=63.92 E-value=5.1 Score=42.62 Aligned_cols=63 Identities=19% Similarity=0.235 Sum_probs=38.7
Q ss_pred CCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHHHHhhcceEEEEEcCC
Q 002143 645 RKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMG 724 (960)
Q Consensus 645 kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFLeeLSk~YEIvIyTAg 724 (960)
+|..|+||+||||+-... +|. ..+.-|++.+.|++|.+....+||=.+
T Consensus 2 ~~~~l~lD~DGTL~~~~~----~p~----------------------------~~~~~~~~~~~L~~L~~~~~~~v~ivS 49 (244)
T TIGR00685 2 RKRAFFFDYDGTLSEIVP----DPD----------------------------AAVVSDRLLTILQKLAARPHNAIWIIS 49 (244)
T ss_pred CcEEEEEecCccccCCcC----CCc----------------------------ccCCCHHHHHHHHHHHhCCCCeEEEEE
Confidence 678899999999995421 221 123457888999999987655433333
Q ss_pred cHHHHHHHHHHhcCCC
Q 002143 725 NKLYATEMAKVLDPKG 740 (960)
Q Consensus 725 treYAd~VLdiLDP~g 740 (960)
.+.+. .+...+.+.+
T Consensus 50 GR~~~-~~~~~~~~~~ 64 (244)
T TIGR00685 50 GRKFL-EKWLGVKLPG 64 (244)
T ss_pred CCChh-hccccCCCCc
Confidence 34443 3344444433
No 167
>PLN02887 hydrolase family protein
Probab=63.57 E-value=12 Score=45.59 Aligned_cols=61 Identities=20% Similarity=0.203 Sum_probs=41.4
Q ss_pred hcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHHHHhhc-ceEEEE
Q 002143 642 FSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHL 720 (960)
Q Consensus 642 ls~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFLeeLSk-~YEIvI 720 (960)
+..+-+.+++||||||++... ++. |...+-|+++.+ -+.++|
T Consensus 304 ~~~~iKLIa~DLDGTLLn~d~--~Is-----------------------------------~~t~eAI~kl~ekGi~~vI 346 (580)
T PLN02887 304 YKPKFSYIFCDMDGTLLNSKS--QIS-----------------------------------ETNAKALKEALSRGVKVVI 346 (580)
T ss_pred hccCccEEEEeCCCCCCCCCC--ccC-----------------------------------HHHHHHHHHHHHCCCeEEE
Confidence 445667899999999998642 122 222345666654 478888
Q ss_pred EcCCcHHHHHHHHHHhcCC
Q 002143 721 YTMGNKLYATEMAKVLDPK 739 (960)
Q Consensus 721 yTAgtreYAd~VLdiLDP~ 739 (960)
.|--...-+..+++.|+..
T Consensus 347 ATGR~~~~i~~~l~~L~l~ 365 (580)
T PLN02887 347 ATGKARPAVIDILKMVDLA 365 (580)
T ss_pred EcCCCHHHHHHHHHHhCcc
Confidence 8887777777788777643
No 168
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=63.15 E-value=11 Score=38.15 Aligned_cols=49 Identities=12% Similarity=0.169 Sum_probs=41.5
Q ss_pred EeeccCHHHHHHHhhc-ceEEEEEcCCcHHHHHHHHHHhcCCCceeeeeee
Q 002143 699 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVI 748 (960)
Q Consensus 699 VkLRPgL~EFLeeLSk-~YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIy 748 (960)
..++|++.++|+++.+ .+.++|.|++...|++.+++.+.-+. +|..++.
T Consensus 86 ~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~-~~~~~l~ 135 (202)
T TIGR01490 86 SILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDN-AIGTRLE 135 (202)
T ss_pred HhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcc-eEecceE
Confidence 4689999999999875 58999999999999999999887654 6666554
No 169
>KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair]
Probab=61.92 E-value=6.8 Score=49.70 Aligned_cols=99 Identities=14% Similarity=0.220 Sum_probs=61.8
Q ss_pred CcchhHHHHHHHHHhhhcCceeeeeecccCC---CCCC--CChhHHHHHHHhCCEEecccC------------CCccEEE
Q 002143 854 DDVDVRNILAAEQRKILAGCRIVFSRVFPVG---EANP--HLHPLWQTAEQFGAVCTKHID------------DQVTHVV 916 (960)
Q Consensus 854 ~~~DVR~ILkelRrqILkGcvIvFSG~fP~~---~~np--e~~~LwklAe~LGAtVssdVd------------~kVTHLV 916 (960)
+..+-..|+++.+-+-|++-++...+.+... ...| .--.+|.-+.+.|+.-.-++. .-.-||+
T Consensus 1044 ds~l~~~i~~fn~~~nLkd~~l~vk~~l~~~~v~q~gp~~~f~e~~~e~le~G~aa~vd~~hada~~~D~~l~~fdvvl~ 1123 (1176)
T KOG3548|consen 1044 DSQLMPAIEPFNPSENLKDTTLYVKSTLSAREVTQTGPGGTFIEIWKEILELGGAAVVDGYHADAETLDETLLKFDVVLV 1123 (1176)
T ss_pred ccccccCccccCchhhccceeeEeeccccceeEEEecCCcchHHHHHHHHHhhchheecccccccccccccccceeEEEe
Confidence 3444444555555555666555555432110 0001 123677777777776654541 1245777
Q ss_pred ecCCCCHHHHHHHhCCCcEEcHHHHHHHHHhccCCC
Q 002143 917 ANSLGTDKVNWALSTGRFVVHPGWVEASALLYRRAN 952 (960)
Q Consensus 917 Ass~gT~Kv~~Alk~GI~IVSpdWLedC~~~wkRvD 952 (960)
+...++.-.++|-..++++|+++||.+|+-.++++.
T Consensus 1124 d~~~~~svmk~ad~l~~pvvs~EWvIQtiI~~~~i~ 1159 (1176)
T KOG3548|consen 1124 DGTFRDSVMKYADTLGAPVVSSEWVIQTIILGKAIE 1159 (1176)
T ss_pred cCccHHHHHHHHHHhCCCccChhHhheeeeccccCC
Confidence 777777778888899999999999999998776653
No 170
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=59.26 E-value=7.5 Score=42.29 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=18.1
Q ss_pred HHhhhhcCCCeEEEEeCCCceeecc
Q 002143 637 EQKKMFSARKLCLVLDLDHTLLNSA 661 (960)
Q Consensus 637 ~q~~lls~kKLTLVLDLDETLVHSs 661 (960)
.|++ +...-..+||||||||+.|.
T Consensus 16 ~~~~-~~~~~k~vIFDlDGTLvDS~ 39 (260)
T PLN03243 16 RQHR-LGCGWLGVVLEWEGVIVEDD 39 (260)
T ss_pred HHHH-hcCCceEEEEeCCCceeCCc
Confidence 3455 44556679999999999984
No 171
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=58.80 E-value=19 Score=44.90 Aligned_cols=59 Identities=19% Similarity=0.073 Sum_probs=41.4
Q ss_pred CCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHHHHhhc-ceEEEEEc
Q 002143 644 ARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYT 722 (960)
Q Consensus 644 ~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFLeeLSk-~YEIvIyT 722 (960)
.+++.+++||||||++.... .. +...+-|+++.+ -+.++|.|
T Consensus 414 ~~~KLIfsDLDGTLLd~d~~--i~-----------------------------------~~t~eAL~~L~ekGI~~VIAT 456 (694)
T PRK14502 414 QFKKIVYTDLDGTLLNPLTY--SY-----------------------------------STALDALRLLKDKELPLVFCS 456 (694)
T ss_pred ceeeEEEEECcCCCcCCCCc--cC-----------------------------------HHHHHHHHHHHHcCCeEEEEe
Confidence 45678999999999986420 00 112345666664 47889999
Q ss_pred CCcHHHHHHHHHHhcCC
Q 002143 723 MGNKLYATEMAKVLDPK 739 (960)
Q Consensus 723 AgtreYAd~VLdiLDP~ 739 (960)
.-....+..+++.|+..
T Consensus 457 GRs~~~i~~l~~~Lgl~ 473 (694)
T PRK14502 457 AKTMGEQDLYRNELGIK 473 (694)
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 88888888888887653
No 172
>PLN02151 trehalose-phosphatase
Probab=58.17 E-value=18 Score=41.85 Aligned_cols=63 Identities=14% Similarity=0.183 Sum_probs=45.7
Q ss_pred hhhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHHHHhhcceEE
Q 002143 639 KKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEM 718 (960)
Q Consensus 639 ~~lls~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFLeeLSk~YEI 718 (960)
......+++.|+||+||||+--.. +|. -+..-|.+.+-|++|++.+.+
T Consensus 91 ~~~~~~~~~ll~lDyDGTL~PIv~----~P~----------------------------~A~~~~~~~~aL~~La~~~~v 138 (354)
T PLN02151 91 LHKSEGKQIVMFLDYDGTLSPIVD----DPD----------------------------RAFMSKKMRNTVRKLAKCFPT 138 (354)
T ss_pred HHhhcCCceEEEEecCccCCCCCC----Ccc----------------------------cccCCHHHHHHHHHHhcCCCE
Confidence 334567899999999999993221 121 123568899999999999999
Q ss_pred EEEcCCcHHHHHHHH
Q 002143 719 HLYTMGNKLYATEMA 733 (960)
Q Consensus 719 vIyTAgtreYAd~VL 733 (960)
+|-|--...-.+.++
T Consensus 139 aIvSGR~~~~l~~~~ 153 (354)
T PLN02151 139 AIVSGRCREKVSSFV 153 (354)
T ss_pred EEEECCCHHHHHHHc
Confidence 999877766655554
No 173
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=57.21 E-value=5.8 Score=40.34 Aligned_cols=14 Identities=36% Similarity=0.634 Sum_probs=12.6
Q ss_pred EEEEeCCCceeecc
Q 002143 648 CLVLDLDHTLLNSA 661 (960)
Q Consensus 648 TLVLDLDETLVHSs 661 (960)
.+++|||||||.|.
T Consensus 2 ~viFD~DGTLiDs~ 15 (197)
T TIGR01548 2 ALVLDMDGVMADVS 15 (197)
T ss_pred ceEEecCceEEech
Confidence 47999999999986
No 174
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=55.84 E-value=6.7 Score=39.05 Aligned_cols=43 Identities=19% Similarity=0.135 Sum_probs=25.4
Q ss_pred CCCChhHHHHHHHhCCEEecccCCCccEEEecCCCCHHHHHHHhCCCcEEc
Q 002143 887 NPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVH 937 (960)
Q Consensus 887 npe~~~LwklAe~LGAtVssdVd~kVTHLVAss~gT~Kv~~Alk~GI~IVS 937 (960)
.|+...+...++.+|.. -.++|.-.....=++.|.+.|++.|-
T Consensus 142 KP~p~~~~~~~~~~~~~--------~~~~l~igDs~~di~aA~~aG~~~i~ 184 (188)
T PRK10725 142 KPAPDTFLRCAQLMGVQ--------PTQCVVFEDADFGIQAARAAGMDAVD 184 (188)
T ss_pred CCChHHHHHHHHHcCCC--------HHHeEEEeccHhhHHHHHHCCCEEEe
Confidence 45555677777888742 22334433334456777888887664
No 175
>PHA02597 30.2 hypothetical protein; Provisional
Probab=54.93 E-value=7 Score=39.56 Aligned_cols=43 Identities=19% Similarity=0.086 Sum_probs=26.9
Q ss_pred hhHHHHHHHhCCEEecccCCCccEEEecCCCCHHHHHHHhC--CCcEEcHHHHHH
Q 002143 891 HPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALST--GRFVVHPGWVEA 943 (960)
Q Consensus 891 ~~LwklAe~LGAtVssdVd~kVTHLVAss~gT~Kv~~Alk~--GI~IVSpdWLed 943 (960)
..+...++.+| + .++|.-.-...=++-|.+. |++.|...|-..
T Consensus 134 ~~~~~a~~~~~--------~--~~~v~vgDs~~di~aA~~a~~Gi~~i~~~~~~~ 178 (197)
T PHA02597 134 KLFIKAKEKYG--------D--RVVCFVDDLAHNLDAAHEALSQLPVIHMLRGER 178 (197)
T ss_pred HHHHHHHHHhC--------C--CcEEEeCCCHHHHHHHHHHHcCCcEEEecchhh
Confidence 34556677787 1 2233333333337778887 999998888764
No 176
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=54.72 E-value=13 Score=42.63 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=38.5
Q ss_pred eEEEeeccCHHHHHHHhhcc-eEEEEEcCCcHHHHHHHHHHh-c
Q 002143 696 GMWTKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVL-D 737 (960)
Q Consensus 696 ~~yVkLRPgL~EFLeeLSk~-YEIvIyTAgtreYAd~VLdiL-D 737 (960)
.-||.+-|++.++|+++.+. +.+.|-|++...|++.+++.+ +
T Consensus 180 ~~yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g 223 (343)
T TIGR02244 180 EKYVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLG 223 (343)
T ss_pred HHHhccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhC
Confidence 46899999999999999865 899999999999999999987 6
No 177
>PRK11587 putative phosphatase; Provisional
Probab=53.17 E-value=7.2 Score=40.38 Aligned_cols=15 Identities=40% Similarity=0.561 Sum_probs=13.5
Q ss_pred eEEEEeCCCceeecc
Q 002143 647 LCLVLDLDHTLLNSA 661 (960)
Q Consensus 647 LTLVLDLDETLVHSs 661 (960)
..+++||||||+.|.
T Consensus 4 k~viFDlDGTL~Ds~ 18 (218)
T PRK11587 4 KGFLFDLDGTLVDSL 18 (218)
T ss_pred CEEEEcCCCCcCcCH
Confidence 579999999999985
No 178
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=53.01 E-value=26 Score=36.70 Aligned_cols=86 Identities=21% Similarity=0.287 Sum_probs=57.7
Q ss_pred EeeccCHHHHHHHhhcc-eEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCcccCCC-
Q 002143 699 TKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 776 (960)
Q Consensus 699 VkLRPgL~EFLeeLSk~-YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLGrd- 776 (960)
..+-||+.+.|+++.+. |.+.|.|+.....++.+++.++-.. ||.. ++.-+++. ..+++ ......-+. .+|.+
T Consensus 88 ~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~-~F~~-i~g~~~~~-~~KP~-P~~l~~~~~-~~~~~~ 162 (220)
T COG0546 88 SRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLAD-YFDV-IVGGDDVP-PPKPD-PEPLLLLLE-KLGLDP 162 (220)
T ss_pred CccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCcc-ccce-EEcCCCCC-CCCcC-HHHHHHHHH-HhCCCh
Confidence 57899999999999864 8999999999999999999988765 7775 44422211 11111 001112222 23455
Q ss_pred CcEEEEcCCCCcc
Q 002143 777 SAVVIIDDSVRVW 789 (960)
Q Consensus 777 s~VVIVDDsp~vw 789 (960)
+++|+|=|+..=-
T Consensus 163 ~~~l~VGDs~~Di 175 (220)
T COG0546 163 EEALMVGDSLNDI 175 (220)
T ss_pred hheEEECCCHHHH
Confidence 5899999987433
No 179
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=52.72 E-value=7.1 Score=39.08 Aligned_cols=14 Identities=36% Similarity=0.536 Sum_probs=12.5
Q ss_pred EEEEeCCCceeecc
Q 002143 648 CLVLDLDHTLLNSA 661 (960)
Q Consensus 648 TLVLDLDETLVHSs 661 (960)
.+++||||||+.+.
T Consensus 2 ~viFDlDGTL~ds~ 15 (184)
T TIGR01993 2 VWFFDLDNTLYPHS 15 (184)
T ss_pred eEEEeCCCCCCCCc
Confidence 58999999999885
No 180
>PRK11590 hypothetical protein; Provisional
Probab=51.36 E-value=8.7 Score=39.95 Aligned_cols=39 Identities=10% Similarity=-0.107 Sum_probs=34.1
Q ss_pred EeeccCHHHHH-HHhh-cceEEEEEcCCcHHHHHHHHHHhc
Q 002143 699 TKLRPGIWTFL-ERAS-KLFEMHLYTMGNKLYATEMAKVLD 737 (960)
Q Consensus 699 VkLRPgL~EFL-eeLS-k~YEIvIyTAgtreYAd~VLdiLD 737 (960)
+.++|++.+.| +.+. ..+.++|-|++...|++++++.+.
T Consensus 94 ~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~ 134 (211)
T PRK11590 94 VTAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTP 134 (211)
T ss_pred CcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHcc
Confidence 56799999999 5676 579999999999999999998765
No 181
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=50.77 E-value=8.5 Score=39.32 Aligned_cols=15 Identities=33% Similarity=0.693 Sum_probs=13.4
Q ss_pred eEEEEeCCCceeecc
Q 002143 647 LCLVLDLDHTLLNSA 661 (960)
Q Consensus 647 LTLVLDLDETLVHSs 661 (960)
..+++||||||+++.
T Consensus 3 ~~viFDlDGTL~ds~ 17 (221)
T TIGR02253 3 KAIFFDLDDTLIDTS 17 (221)
T ss_pred eEEEEeCCCCCcCCC
Confidence 478999999999986
No 182
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=50.57 E-value=42 Score=37.45 Aligned_cols=64 Identities=17% Similarity=0.138 Sum_probs=47.0
Q ss_pred hhhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHHHHhhcceE-
Q 002143 639 KKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFE- 717 (960)
Q Consensus 639 ~~lls~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFLeeLSk~YE- 717 (960)
...+..+|..|+||.||||.+-... |.. +..=+++.+.|..|+..+.
T Consensus 11 ~~~~~a~~~~~~lDyDGTl~~i~~~----p~~----------------------------a~~~~~l~~lL~~Las~~~~ 58 (266)
T COG1877 11 EPYLNARKRLLFLDYDGTLTEIVPH----PEA----------------------------AVPDDRLLSLLQDLASDPRN 58 (266)
T ss_pred cccccccceEEEEeccccccccccC----ccc----------------------------cCCCHHHHHHHHHHHhcCCC
Confidence 3456789999999999999987642 211 1134667789999999988
Q ss_pred -EEEEcCCcHHHHHHHHH
Q 002143 718 -MHLYTMGNKLYATEMAK 734 (960)
Q Consensus 718 -IvIyTAgtreYAd~VLd 734 (960)
++|.|--...-.+..+.
T Consensus 59 ~v~iiSGR~~~~l~~~~~ 76 (266)
T COG1877 59 VVAIISGRSLAELERLFG 76 (266)
T ss_pred eEEEEeCCCHHHHHHhcC
Confidence 78887777776555555
No 183
>PLN02580 trehalose-phosphatase
Probab=50.57 E-value=25 Score=41.07 Aligned_cols=63 Identities=19% Similarity=0.267 Sum_probs=46.8
Q ss_pred hhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHHHHhhcceEEE
Q 002143 640 KMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMH 719 (960)
Q Consensus 640 ~lls~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFLeeLSk~YEIv 719 (960)
...+.+++.|+||.||||.--.. +|. -+..-|.+.+-|++|++.+.++
T Consensus 113 ~~~~~k~~~LfLDyDGTLaPIv~----~Pd----------------------------~A~~s~~~~~aL~~La~~~~VA 160 (384)
T PLN02580 113 NFAKGKKIALFLDYDGTLSPIVD----DPD----------------------------RALMSDAMRSAVKNVAKYFPTA 160 (384)
T ss_pred HHhhcCCeEEEEecCCccCCCCC----Ccc----------------------------cccCCHHHHHHHHHHhhCCCEE
Confidence 34567899999999999984321 221 1235688999999999999999
Q ss_pred EEcCCcHHHHHHHHH
Q 002143 720 LYTMGNKLYATEMAK 734 (960)
Q Consensus 720 IyTAgtreYAd~VLd 734 (960)
|-|--...-.+..+.
T Consensus 161 IVSGR~~~~L~~~l~ 175 (384)
T PLN02580 161 IISGRSRDKVYELVG 175 (384)
T ss_pred EEeCCCHHHHHHHhC
Confidence 999887777665554
No 184
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=50.39 E-value=9.4 Score=39.17 Aligned_cols=15 Identities=27% Similarity=0.368 Sum_probs=13.3
Q ss_pred eEEEEeCCCceeecc
Q 002143 647 LCLVLDLDHTLLNSA 661 (960)
Q Consensus 647 LTLVLDLDETLVHSs 661 (960)
.++++||||||+.+.
T Consensus 2 k~iiFD~DGTL~ds~ 16 (220)
T TIGR03351 2 SLVVLDMAGTTVDED 16 (220)
T ss_pred cEEEEecCCCeeccC
Confidence 468999999999986
No 185
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=50.03 E-value=8.9 Score=39.32 Aligned_cols=17 Identities=35% Similarity=0.540 Sum_probs=14.3
Q ss_pred CeEEEEeCCCceeeccc
Q 002143 646 KLCLVLDLDHTLLNSAK 662 (960)
Q Consensus 646 KLTLVLDLDETLVHSs~ 662 (960)
...+++|+||||+++..
T Consensus 3 ~~~viFD~DGTL~ds~~ 19 (214)
T PRK13288 3 INTVLFDLDGTLINTNE 19 (214)
T ss_pred ccEEEEeCCCcCccCHH
Confidence 35789999999999863
No 186
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=49.41 E-value=29 Score=36.91 Aligned_cols=50 Identities=14% Similarity=0.191 Sum_probs=43.5
Q ss_pred EEeeccCHHHHHHHhhcc-eEEEEEcCCcHHHHHHHHHHhcCCCceeeeeee
Q 002143 698 WTKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVI 748 (960)
Q Consensus 698 yVkLRPgL~EFLeeLSk~-YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIy 748 (960)
+++++||..+.++.+.+. +.++|.|+|-..|+++|.+.|.-+. .+.+++.
T Consensus 75 ~~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~-~~an~l~ 125 (212)
T COG0560 75 FLRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDY-VVANELE 125 (212)
T ss_pred cCcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCch-heeeEEE
Confidence 389999999999999876 9999999999999999999998775 4565544
No 187
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=48.56 E-value=10 Score=38.38 Aligned_cols=14 Identities=29% Similarity=0.244 Sum_probs=12.7
Q ss_pred EEEEeCCCceeecc
Q 002143 648 CLVLDLDHTLLNSA 661 (960)
Q Consensus 648 TLVLDLDETLVHSs 661 (960)
.+++||||||+.+.
T Consensus 2 ~viFDlDGTL~d~~ 15 (203)
T TIGR02252 2 LITFDAVGTLLALK 15 (203)
T ss_pred eEEEecCCceeeeC
Confidence 68999999999985
No 188
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=47.27 E-value=9.6 Score=41.44 Aligned_cols=16 Identities=38% Similarity=0.540 Sum_probs=14.0
Q ss_pred CeEEEEeCCCceeecc
Q 002143 646 KLCLVLDLDHTLLNSA 661 (960)
Q Consensus 646 KLTLVLDLDETLVHSs 661 (960)
.+.+++||||||+++.
T Consensus 13 ~k~viFDlDGTL~Ds~ 28 (272)
T PRK13223 13 PRLVMFDLDGTLVDSV 28 (272)
T ss_pred CCEEEEcCCCccccCH
Confidence 3489999999999985
No 189
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=46.53 E-value=9.8 Score=37.58 Aligned_cols=15 Identities=20% Similarity=0.596 Sum_probs=13.3
Q ss_pred eEEEEeCCCceeecc
Q 002143 647 LCLVLDLDHTLLNSA 661 (960)
Q Consensus 647 LTLVLDLDETLVHSs 661 (960)
..+++||||||+.+.
T Consensus 2 ~~iiFD~DGTL~ds~ 16 (185)
T TIGR02009 2 KAVIFDMDGVIVDTA 16 (185)
T ss_pred CeEEEcCCCcccCCh
Confidence 468999999999985
No 190
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=45.95 E-value=12 Score=38.26 Aligned_cols=81 Identities=23% Similarity=0.192 Sum_probs=43.3
Q ss_pred EeeccCHHHHHHHhhcc-eEEEEEcCCcHH-H---HHHHHHHhcCC-CceeeeeeeecCCCCCCCCCCCCCCccccCCcc
Q 002143 699 TKLRPGIWTFLERASKL-FEMHLYTMGNKL-Y---ATEMAKVLDPK-GVLFAGRVISRGDDGDPFDGDERVPKSKDLEGV 772 (960)
Q Consensus 699 VkLRPgL~EFLeeLSk~-YEIvIyTAgtre-Y---Ad~VLdiLDP~-g~lF~~RIySRddc~~~~dGder~~yiKDLsrV 772 (960)
...=||+.|.|++|.+. |++++-|+.... | +..=.+.|+-. +.++.++++. |. -|.+
T Consensus 72 l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i~~~~~~~---~~-----------~K~~--- 134 (191)
T PF06941_consen 72 LPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFIPYDNLIF---TG-----------DKTL--- 134 (191)
T ss_dssp --B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHHHHCCEEE---ES-----------SGGG---
T ss_pred CCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCCchheEEE---ec-----------CCCe---
Confidence 66779999999999987 477777766554 2 34445666643 1122223332 11 1332
Q ss_pred cCCCCcEEEEcCCCCccccCccCcccc
Q 002143 773 LGMESAVVIIDDSVRVWPHNKLNLIVV 799 (960)
Q Consensus 773 LGrds~VVIVDDsp~vw~~qpdN~I~I 799 (960)
++.| |+|||++.........++++
T Consensus 135 v~~D---vlIDD~~~n~~~~~~~g~~~ 158 (191)
T PF06941_consen 135 VGGD---VLIDDRPHNLEQFANAGIPV 158 (191)
T ss_dssp C--S---EEEESSSHHHSS-SSESSEE
T ss_pred Eecc---EEecCChHHHHhccCCCceE
Confidence 2333 78999997765444445433
No 191
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=45.75 E-value=10 Score=39.81 Aligned_cols=15 Identities=53% Similarity=0.738 Sum_probs=13.6
Q ss_pred eEEEEeCCCceeecc
Q 002143 647 LCLVLDLDHTLLNSA 661 (960)
Q Consensus 647 LTLVLDLDETLVHSs 661 (960)
..+|+||||||+.|.
T Consensus 13 k~viFD~DGTL~Ds~ 27 (229)
T PRK13226 13 RAVLFDLDGTLLDSA 27 (229)
T ss_pred CEEEEcCcCccccCH
Confidence 479999999999996
No 192
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=44.42 E-value=13 Score=39.97 Aligned_cols=15 Identities=13% Similarity=0.246 Sum_probs=13.4
Q ss_pred eEEEEeCCCceeecc
Q 002143 647 LCLVLDLDHTLLNSA 661 (960)
Q Consensus 647 LTLVLDLDETLVHSs 661 (960)
..+++||||||+.+.
T Consensus 5 k~vIFDlDGTLiDs~ 19 (267)
T PRK13478 5 QAVIFDWAGTTVDFG 19 (267)
T ss_pred EEEEEcCCCCeecCC
Confidence 589999999999984
No 193
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=44.06 E-value=11 Score=35.70 Aligned_cols=13 Identities=38% Similarity=0.810 Sum_probs=11.8
Q ss_pred EEEeCCCceeecc
Q 002143 649 LVLDLDHTLLNSA 661 (960)
Q Consensus 649 LVLDLDETLVHSs 661 (960)
++|||||||+++.
T Consensus 1 iifD~dgtL~d~~ 13 (176)
T PF13419_consen 1 IIFDLDGTLVDTD 13 (176)
T ss_dssp EEEESBTTTEEHH
T ss_pred cEEECCCCcEeCH
Confidence 6899999999885
No 194
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=43.65 E-value=11 Score=37.34 Aligned_cols=14 Identities=29% Similarity=0.643 Sum_probs=12.4
Q ss_pred EEEEeCCCceeecc
Q 002143 648 CLVLDLDHTLLNSA 661 (960)
Q Consensus 648 TLVLDLDETLVHSs 661 (960)
.+++|+|+||+.+.
T Consensus 1 ~iiFD~DGTL~ds~ 14 (185)
T TIGR01990 1 AVIFDLDGVITDTA 14 (185)
T ss_pred CeEEcCCCccccCh
Confidence 37999999999986
No 195
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=43.62 E-value=9.1 Score=39.00 Aligned_cols=13 Identities=46% Similarity=0.695 Sum_probs=11.8
Q ss_pred EEEeCCCceeecc
Q 002143 649 LVLDLDHTLLNSA 661 (960)
Q Consensus 649 LVLDLDETLVHSs 661 (960)
+|+||||||+.|.
T Consensus 1 iiFDlDGTL~Ds~ 13 (205)
T TIGR01454 1 VVFDLDGVLVDSF 13 (205)
T ss_pred CeecCcCccccCH
Confidence 5899999999986
No 196
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=43.57 E-value=14 Score=39.16 Aligned_cols=15 Identities=13% Similarity=0.220 Sum_probs=13.2
Q ss_pred eEEEEeCCCceeecc
Q 002143 647 LCLVLDLDHTLLNSA 661 (960)
Q Consensus 647 LTLVLDLDETLVHSs 661 (960)
..+++||||||+.+.
T Consensus 3 k~viFD~DGTLiDs~ 17 (253)
T TIGR01422 3 EAVIFDWAGTTVDFG 17 (253)
T ss_pred eEEEEeCCCCeecCC
Confidence 478999999999984
No 197
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=43.54 E-value=11 Score=40.06 Aligned_cols=15 Identities=33% Similarity=0.494 Sum_probs=13.5
Q ss_pred eEEEEeCCCceeecc
Q 002143 647 LCLVLDLDHTLLNSA 661 (960)
Q Consensus 647 LTLVLDLDETLVHSs 661 (960)
..+++||||||+.|.
T Consensus 23 k~viFDlDGTLiDs~ 37 (248)
T PLN02770 23 EAVLFDVDGTLCDSD 37 (248)
T ss_pred CEEEEcCCCccCcCH
Confidence 479999999999986
No 198
>PRK11590 hypothetical protein; Provisional
Probab=42.38 E-value=33 Score=35.69 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=14.5
Q ss_pred CCCeEEEEeCCCceeecc
Q 002143 644 ARKLCLVLDLDHTLLNSA 661 (960)
Q Consensus 644 ~kKLTLVLDLDETLVHSs 661 (960)
..+..+++||||||++..
T Consensus 4 ~~~k~~iFD~DGTL~~~d 21 (211)
T PRK11590 4 HERRVVFFDLDGTLHQQD 21 (211)
T ss_pred ccceEEEEecCCCCcccc
Confidence 356689999999999554
No 199
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=42.24 E-value=12 Score=39.53 Aligned_cols=83 Identities=16% Similarity=0.131 Sum_probs=49.6
Q ss_pred EeeccCHHHHHHHhhcceEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCcccCCC-C
Q 002143 699 TKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-S 777 (960)
Q Consensus 699 VkLRPgL~EFLeeLSk~YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLGrd-s 777 (960)
+..-||+.++|++|.+.|.++|.|++... ++.++-. .||.. +++-++.. ..+.. ...+.+-+. .+|.+ +
T Consensus 112 ~~~~~gv~~~L~~L~~~~~l~i~Tn~~~~-----~~~~gl~-~~fd~-i~~~~~~~-~~KP~-p~~~~~a~~-~~~~~~~ 181 (238)
T PRK10748 112 IDVPQATHDTLKQLAKKWPLVAITNGNAQ-----PELFGLG-DYFEF-VLRAGPHG-RSKPF-SDMYHLAAE-KLNVPIG 181 (238)
T ss_pred CCCCccHHHHHHHHHcCCCEEEEECCCch-----HHHCCcH-Hhhce-eEecccCC-cCCCc-HHHHHHHHH-HcCCChh
Confidence 55669999999999988999999998865 2333222 35654 55433211 11211 112333333 35666 7
Q ss_pred cEEEEcCCC--Ccccc
Q 002143 778 AVVIIDDSV--RVWPH 791 (960)
Q Consensus 778 ~VVIVDDsp--~vw~~ 791 (960)
.+|+|.|++ ++-..
T Consensus 182 ~~~~VGD~~~~Di~~A 197 (238)
T PRK10748 182 EILHVGDDLTTDVAGA 197 (238)
T ss_pred HEEEEcCCcHHHHHHH
Confidence 899998874 45443
No 200
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=42.05 E-value=68 Score=32.10 Aligned_cols=44 Identities=25% Similarity=0.278 Sum_probs=39.1
Q ss_pred EEEeeccCHHHHHHHhhcc-eEEEEEcCCcHHHHHHHHHHhcCCC
Q 002143 697 MWTKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKG 740 (960)
Q Consensus 697 ~yVkLRPgL~EFLeeLSk~-YEIvIyTAgtreYAd~VLdiLDP~g 740 (960)
..-.+||++.++|++|.+. +.++|.|......|..+++.+.-..
T Consensus 124 ~~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~~ 168 (215)
T PF00702_consen 124 LRDPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIFD 168 (215)
T ss_dssp EEEEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSCS
T ss_pred ecCcchhhhhhhhhhhhccCcceeeeecccccccccccccccccc
Confidence 3457899999999999986 9999999999999999999998643
No 201
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=41.91 E-value=54 Score=37.46 Aligned_cols=57 Identities=16% Similarity=0.180 Sum_probs=43.0
Q ss_pred CcchhHHHHHHHHHhhhcCceeeeeecccCCCCCCCChhHHHHHHHhCCEEecccCC
Q 002143 854 DDVDVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDD 910 (960)
Q Consensus 854 ~~~DVR~ILkelRrqILkGcvIvFSG~fP~~~~npe~~~LwklAe~LGAtVssdVd~ 910 (960)
...+++.+++.+++.+-++-.++++|-+|.+........+.+++.+.|+.|.-|.+.
T Consensus 112 s~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~vilD~Sg 168 (310)
T COG1105 112 SEAELEQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRILRQQGAKVILDTSG 168 (310)
T ss_pred CHHHHHHHHHHHHHhcccCCEEEEeCCCCCCCCHHHHHHHHHHHHhcCCeEEEECCh
Confidence 456677777777777777777999999998865444457888899999988766543
No 202
>PF13701 DDE_Tnp_1_4: Transposase DDE domain group 1
Probab=41.52 E-value=69 Score=37.96 Aligned_cols=126 Identities=21% Similarity=0.247 Sum_probs=64.7
Q ss_pred CCCCCccCCcchhccCCChhHHHHHhHHHHhhhHHH-hhhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccc
Q 002143 603 AHPQSAWGDVEHLFEGYDDQQKAAIQKERTRRLEEQ-KKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQD 681 (960)
Q Consensus 603 ~~pq~~~~~f~~L~~g~~~~q~~~i~ke~akrL~~q-~~lls~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D 681 (960)
...|.++.+|++....-...+ .++.+.+. ..-+......+|||||.|..-.....+.. .++.---.+
T Consensus 102 Las~~t~sR~e~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~LDiD~T~~~~~G~Qe~~-----~~n~y~g~~ 169 (448)
T PF13701_consen 102 LASQPTLSRLENRPDERDLKR-------LRRALVDLFLASYKKPPKEIVLDIDSTVDDVHGEQEGA-----VFNTYYGED 169 (448)
T ss_pred ccchhhHHHHHccccHHHHHH-------HHHHHHHHHHHHhccccceEEEecccccccchhhcccc-----cccccCCCc
Confidence 556778888877665222111 11222232 11133556889999999985433211100 000000001
Q ss_pred cCCCcceeEee---ccceEEEeeccC-------HHHHHHHhhcce-----E-EEEEcCCcHHHHHHHHHHhcCCCcee
Q 002143 682 REKPHRHLFRF---PHMGMWTKLRPG-------IWTFLERASKLF-----E-MHLYTMGNKLYATEMAKVLDPKGVLF 743 (960)
Q Consensus 682 ~~~P~~~~F~l---~~~~~yVkLRPg-------L~EFLeeLSk~Y-----E-IvIyTAgtreYAd~VLdiLDP~g~lF 743 (960)
.-.| ++.+ .+.-+-..+||| ..+||+++-..+ + -+++=+-+--|..++++.++-.|..|
T Consensus 170 gY~P---L~~f~g~~G~~l~a~LRpGn~~sa~g~~~fL~~~l~~lr~~~~~~~ILvR~DSgF~~~el~~~ce~~g~~y 244 (448)
T PF13701_consen 170 GYHP---LVAFDGQTGYLLAAELRPGNVHSAKGAAEFLKRVLRRLRQRWPDTRILVRGDSGFASPELMDWCEAEGVDY 244 (448)
T ss_pred cccc---ceeccCCCCceEEEEccCCCCChHHHHHHHHHHHHHHHhhhCccceEEEEecCccCcHHHHHHHHhCCCeE
Confidence 1111 1222 223455789998 567777754332 2 24555555667777999998877644
No 203
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=41.38 E-value=13 Score=36.41 Aligned_cols=14 Identities=29% Similarity=0.707 Sum_probs=12.3
Q ss_pred EEEEeCCCceeecc
Q 002143 648 CLVLDLDHTLLNSA 661 (960)
Q Consensus 648 TLVLDLDETLVHSs 661 (960)
.+++||||||+.+.
T Consensus 1 ~vlFDlDgtLv~~~ 14 (183)
T TIGR01509 1 AILFDLDGVLVDTS 14 (183)
T ss_pred CeeeccCCceechH
Confidence 37999999999985
No 204
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=41.09 E-value=16 Score=38.35 Aligned_cols=18 Identities=39% Similarity=0.547 Sum_probs=15.0
Q ss_pred CCeEEEEeCCCceeeccc
Q 002143 645 RKLCLVLDLDHTLLNSAK 662 (960)
Q Consensus 645 kKLTLVLDLDETLVHSs~ 662 (960)
...++++||||||+.+..
T Consensus 3 ~~~~iiFDlDGTL~Ds~~ 20 (220)
T COG0546 3 MIKAILFDLDGTLVDSAE 20 (220)
T ss_pred CCCEEEEeCCCccccChH
Confidence 346899999999999863
No 205
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=40.59 E-value=14 Score=37.38 Aligned_cols=14 Identities=36% Similarity=0.503 Sum_probs=12.7
Q ss_pred EEEEeCCCceeecc
Q 002143 648 CLVLDLDHTLLNSA 661 (960)
Q Consensus 648 TLVLDLDETLVHSs 661 (960)
.+++|||||||++.
T Consensus 3 ~viFD~dgTLiD~~ 16 (198)
T TIGR01428 3 ALVFDVYGTLFDVH 16 (198)
T ss_pred EEEEeCCCcCccHH
Confidence 68999999999875
No 206
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=40.35 E-value=11 Score=38.19 Aligned_cols=13 Identities=54% Similarity=0.838 Sum_probs=11.6
Q ss_pred EEEeCCCceeecc
Q 002143 649 LVLDLDHTLLNSA 661 (960)
Q Consensus 649 LVLDLDETLVHSs 661 (960)
+|+||||||+.|.
T Consensus 1 viFD~DGTL~Ds~ 13 (213)
T TIGR01449 1 VLFDLDGTLVDSA 13 (213)
T ss_pred CeecCCCccccCH
Confidence 5899999999875
No 207
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=39.92 E-value=14 Score=40.67 Aligned_cols=16 Identities=31% Similarity=0.546 Sum_probs=14.1
Q ss_pred CeEEEEeCCCceeecc
Q 002143 646 KLCLVLDLDHTLLNSA 661 (960)
Q Consensus 646 KLTLVLDLDETLVHSs 661 (960)
-..+++||||||++|.
T Consensus 62 ~k~vIFDlDGTLiDS~ 77 (273)
T PRK13225 62 LQAIIFDFDGTLVDSL 77 (273)
T ss_pred cCEEEECCcCccccCH
Confidence 4479999999999996
No 208
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=39.89 E-value=15 Score=37.46 Aligned_cols=46 Identities=9% Similarity=-0.060 Sum_probs=26.8
Q ss_pred CCCChhHHHHHHHh-CCEEecccCCCccEEEecCCCC-HHHHHHHhCCCcEEcHHH
Q 002143 887 NPHLHPLWQTAEQF-GAVCTKHIDDQVTHVVANSLGT-DKVNWALSTGRFVVHPGW 940 (960)
Q Consensus 887 npe~~~LwklAe~L-GAtVssdVd~kVTHLVAss~gT-~Kv~~Alk~GI~IVSpdW 940 (960)
.|+...+...++.+ |.. ..+.|.-.... .=+..|++.|++.|...|
T Consensus 152 KP~~~~~~~~~~~~~~~~--------~~~~v~igD~~~~di~~A~~~G~~~i~~~~ 199 (224)
T TIGR02254 152 KPDKEIFNYALERMPKFS--------KEEVLMIGDSLTADIKGGQNAGLDTCWMNP 199 (224)
T ss_pred CCCHHHHHHHHHHhcCCC--------chheEEECCCcHHHHHHHHHCCCcEEEECC
Confidence 34444556667777 533 12334433333 457778888987776666
No 209
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=39.42 E-value=14 Score=36.46 Aligned_cols=13 Identities=31% Similarity=0.493 Sum_probs=11.9
Q ss_pred EEEeCCCceeecc
Q 002143 649 LVLDLDHTLLNSA 661 (960)
Q Consensus 649 LVLDLDETLVHSs 661 (960)
|++|||||||.+.
T Consensus 2 viFD~DGTL~D~~ 14 (175)
T TIGR01493 2 MVFDVYGTLVDVH 14 (175)
T ss_pred eEEecCCcCcccH
Confidence 7999999999885
No 210
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=39.41 E-value=17 Score=37.35 Aligned_cols=17 Identities=41% Similarity=0.643 Sum_probs=14.3
Q ss_pred CCeEEEEeCCCceeecc
Q 002143 645 RKLCLVLDLDHTLLNSA 661 (960)
Q Consensus 645 kKLTLVLDLDETLVHSs 661 (960)
.+..+++|+||||+++.
T Consensus 13 ~~k~iiFD~DGTL~~~~ 29 (219)
T TIGR00338 13 SKKLVVFDMDSTLINAE 29 (219)
T ss_pred cCCEEEEeCcccCCCch
Confidence 35589999999999874
No 211
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=39.28 E-value=52 Score=39.82 Aligned_cols=41 Identities=24% Similarity=0.251 Sum_probs=36.5
Q ss_pred EeeccCHHHHHHHhhcc-eEEEEEcCCcHHHHHHHHHHhcCC
Q 002143 699 TKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPK 739 (960)
Q Consensus 699 VkLRPgL~EFLeeLSk~-YEIvIyTAgtreYAd~VLdiLDP~ 739 (960)
-.+||++.++|+++.+. ++++|.|...+.+|+.+++.+.-+
T Consensus 404 d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi~ 445 (562)
T TIGR01511 404 DQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGIN 445 (562)
T ss_pred ccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCCc
Confidence 34799999999999864 999999999999999999988653
No 212
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=39.23 E-value=18 Score=36.94 Aligned_cols=14 Identities=29% Similarity=0.534 Sum_probs=12.6
Q ss_pred EEEEeCCCceeecc
Q 002143 648 CLVLDLDHTLLNSA 661 (960)
Q Consensus 648 TLVLDLDETLVHSs 661 (960)
.+++||||||+++.
T Consensus 4 ~viFDldGtL~d~~ 17 (211)
T TIGR02247 4 AVIFDFGGVLLPSP 17 (211)
T ss_pred EEEEecCCceecCH
Confidence 79999999999973
No 213
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=39.01 E-value=51 Score=36.49 Aligned_cols=50 Identities=22% Similarity=0.491 Sum_probs=39.3
Q ss_pred EeeccCHHHHHHHhhcc--eEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeec
Q 002143 699 TKLRPGIWTFLERASKL--FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISR 750 (960)
Q Consensus 699 VkLRPgL~EFLeeLSk~--YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIySR 750 (960)
+-+-||+-+.++.+++. ||++|-+-+..-+.+.+++..+-.- +|. +||+.
T Consensus 83 iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~~d-~F~-~IfTN 134 (256)
T KOG3120|consen 83 IPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAGIHD-LFS-EIFTN 134 (256)
T ss_pred CCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHccHHH-HHH-HHhcC
Confidence 55679999988888754 8999999999999999999876532 455 45543
No 214
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=38.92 E-value=24 Score=37.39 Aligned_cols=15 Identities=40% Similarity=0.605 Sum_probs=13.3
Q ss_pred eEEEEeCCCceeecc
Q 002143 647 LCLVLDLDHTLLNSA 661 (960)
Q Consensus 647 LTLVLDLDETLVHSs 661 (960)
..+++||||||+.+.
T Consensus 11 k~iiFDlDGTL~D~~ 25 (238)
T PRK10748 11 SALTFDLDDTLYDNR 25 (238)
T ss_pred eeEEEcCcccccCCh
Confidence 479999999999984
No 215
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=38.25 E-value=18 Score=37.49 Aligned_cols=17 Identities=29% Similarity=0.559 Sum_probs=14.4
Q ss_pred CCeEEEEeCCCceeecc
Q 002143 645 RKLCLVLDLDHTLLNSA 661 (960)
Q Consensus 645 kKLTLVLDLDETLVHSs 661 (960)
.-..+++|+||||+++.
T Consensus 6 ~~k~iiFD~DGTL~d~~ 22 (222)
T PRK10826 6 QILAAIFDMDGLLIDSE 22 (222)
T ss_pred cCcEEEEcCCCCCCcCH
Confidence 35688999999999985
No 216
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=38.06 E-value=16 Score=37.25 Aligned_cols=15 Identities=47% Similarity=0.651 Sum_probs=13.3
Q ss_pred eEEEEeCCCceeecc
Q 002143 647 LCLVLDLDHTLLNSA 661 (960)
Q Consensus 647 LTLVLDLDETLVHSs 661 (960)
..+++|+||||+++.
T Consensus 7 ~~iiFD~DGTL~d~~ 21 (226)
T PRK13222 7 RAVAFDLDGTLVDSA 21 (226)
T ss_pred cEEEEcCCcccccCH
Confidence 479999999999885
No 217
>PLN02382 probable sucrose-phosphatase
Probab=37.98 E-value=16 Score=42.55 Aligned_cols=21 Identities=33% Similarity=0.662 Sum_probs=17.8
Q ss_pred hhhcCCCeEEEEeCCCceeec
Q 002143 640 KMFSARKLCLVLDLDHTLLNS 660 (960)
Q Consensus 640 ~lls~kKLTLVLDLDETLVHS 660 (960)
++-...++.||.||||||+..
T Consensus 3 ~~~~~~~~lI~sDLDGTLL~~ 23 (413)
T PLN02382 3 RLSGSPRLMIVSDLDHTMVDH 23 (413)
T ss_pred cccCCCCEEEEEcCCCcCcCC
Confidence 445678999999999999965
No 218
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=37.97 E-value=29 Score=34.32 Aligned_cols=47 Identities=11% Similarity=0.157 Sum_probs=36.6
Q ss_pred eccCHH----HHHHHh-hcceEEEEEcCCcHHHHHHHHHHhcCCC-ceeeeee
Q 002143 701 LRPGIW----TFLERA-SKLFEMHLYTMGNKLYATEMAKVLDPKG-VLFAGRV 747 (960)
Q Consensus 701 LRPgL~----EFLeeL-Sk~YEIvIyTAgtreYAd~VLdiLDP~g-~lF~~RI 747 (960)
++|++. +||+++ ...++++|-|++...|++.+++.+.-.. .++..++
T Consensus 86 ~~~~~~~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~~~v~~~~~ 138 (192)
T PF12710_consen 86 LFPGFIPDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDDDNVIGNEL 138 (192)
T ss_dssp HCTTCHTTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSEGGEEEEEE
T ss_pred cCcCchhhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEEEEEee
Confidence 456666 999998 4689999999999999999999776443 2344444
No 219
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=37.50 E-value=18 Score=36.07 Aligned_cols=15 Identities=33% Similarity=0.490 Sum_probs=13.0
Q ss_pred eEEEEeCCCceeecc
Q 002143 647 LCLVLDLDHTLLNSA 661 (960)
Q Consensus 647 LTLVLDLDETLVHSs 661 (960)
.++|+||||||+.+.
T Consensus 5 k~viFD~DGTLid~~ 19 (201)
T TIGR01491 5 KLIIFDLDGTLTDVM 19 (201)
T ss_pred eEEEEeCCCCCcCCc
Confidence 479999999999864
No 220
>PRK09449 dUMP phosphatase; Provisional
Probab=36.46 E-value=17 Score=37.48 Aligned_cols=47 Identities=13% Similarity=0.092 Sum_probs=25.1
Q ss_pred CCCChhHHHHHHHhCCEEecccCCCccEEEecCCCCHHHHHHHhCCCcEEcHH
Q 002143 887 NPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPG 939 (960)
Q Consensus 887 npe~~~LwklAe~LGAtVssdVd~kVTHLVAss~gT~Kv~~Alk~GI~IVSpd 939 (960)
.|+...+...++.+|.. +.-..++....-..=+..|++.|++.|...
T Consensus 150 KP~p~~~~~~~~~~~~~------~~~~~~~vgD~~~~Di~~A~~aG~~~i~~~ 196 (224)
T PRK09449 150 KPDVAIFDYALEQMGNP------DRSRVLMVGDNLHSDILGGINAGIDTCWLN 196 (224)
T ss_pred CCCHHHHHHHHHHcCCC------CcccEEEEcCCcHHHHHHHHHCCCcEEEEC
Confidence 45545566667777632 111233333332234677888888766554
No 221
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=36.43 E-value=45 Score=35.21 Aligned_cols=37 Identities=11% Similarity=-0.095 Sum_probs=33.0
Q ss_pred EeeccCHHHHHH-Hhh-cceEEEEEcCCcHHHHHHHHHH
Q 002143 699 TKLRPGIWTFLE-RAS-KLFEMHLYTMGNKLYATEMAKV 735 (960)
Q Consensus 699 VkLRPgL~EFLe-eLS-k~YEIvIyTAgtreYAd~VLdi 735 (960)
+.++|++.+.|+ .+. +-+.|+|-|++...|++++++.
T Consensus 93 ~~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~ 131 (210)
T TIGR01545 93 VTAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFD 131 (210)
T ss_pred CCCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHh
Confidence 367999999996 777 5899999999999999999976
No 222
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=36.30 E-value=21 Score=39.27 Aligned_cols=17 Identities=24% Similarity=0.342 Sum_probs=14.5
Q ss_pred CCeEEEEeCCCceeecc
Q 002143 645 RKLCLVLDLDHTLLNSA 661 (960)
Q Consensus 645 kKLTLVLDLDETLVHSs 661 (960)
+-..+|+||||||+.+.
T Consensus 39 ~~k~VIFDlDGTLvDS~ 55 (286)
T PLN02779 39 LPEALLFDCDGVLVETE 55 (286)
T ss_pred CCcEEEEeCceeEEccc
Confidence 34579999999999986
No 223
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=36.09 E-value=91 Score=34.71 Aligned_cols=36 Identities=14% Similarity=0.082 Sum_probs=25.3
Q ss_pred HHHHhh-cceEEEEEcCCcHHHHHHHHHHhcCCCcee
Q 002143 708 FLERAS-KLFEMHLYTMGNKLYATEMAKVLDPKGVLF 743 (960)
Q Consensus 708 FLeeLS-k~YEIvIyTAgtreYAd~VLdiLDP~g~lF 743 (960)
.|.++. .-|+|+.+|.-++.=-....+-|+-++..|
T Consensus 31 v~~el~d~G~~Vi~~SSKT~aE~~~l~~~l~v~~~p~ 67 (274)
T COG3769 31 VLLELKDAGVPVILCSSKTRAEMLYLQKSLGVQGLPL 67 (274)
T ss_pred HHHHHHHcCCeEEEeccchHHHHHHHHHhcCCCCCce
Confidence 344444 469999998877766666778888877433
No 224
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=35.98 E-value=65 Score=40.11 Aligned_cols=61 Identities=20% Similarity=0.172 Sum_probs=42.8
Q ss_pred cCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHHHHhhc--ceEEEE
Q 002143 643 SARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK--LFEMHL 720 (960)
Q Consensus 643 s~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFLeeLSk--~YEIvI 720 (960)
..++..|++|+||||+.... +|. ....-|.+.+.|++|.+ ...|+|
T Consensus 489 ~~~~rLi~~D~DGTL~~~~~----~~~----------------------------~~~~~~~~~~~L~~L~~d~g~~V~i 536 (726)
T PRK14501 489 AASRRLLLLDYDGTLVPFAP----DPE----------------------------LAVPDKELRDLLRRLAADPNTDVAI 536 (726)
T ss_pred hccceEEEEecCccccCCCC----Ccc----------------------------cCCCCHHHHHHHHHHHcCCCCeEEE
Confidence 46778999999999996431 111 01134677889999987 688999
Q ss_pred EcCCcHHHHHHHHHH
Q 002143 721 YTMGNKLYATEMAKV 735 (960)
Q Consensus 721 yTAgtreYAd~VLdi 735 (960)
.|--.....++++..
T Consensus 537 vSGR~~~~l~~~~~~ 551 (726)
T PRK14501 537 ISGRDRDTLERWFGD 551 (726)
T ss_pred EeCCCHHHHHHHhCC
Confidence 988887776665543
No 225
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=35.45 E-value=20 Score=37.80 Aligned_cols=16 Identities=44% Similarity=0.526 Sum_probs=13.4
Q ss_pred CeEEEEeCCCceeecc
Q 002143 646 KLCLVLDLDHTLLNSA 661 (960)
Q Consensus 646 KLTLVLDLDETLVHSs 661 (960)
-+.+++||||||+.+.
T Consensus 10 ~k~vIFDlDGTL~d~~ 25 (224)
T PRK14988 10 VDTVLLDMDGTLLDLA 25 (224)
T ss_pred CCEEEEcCCCCccchh
Confidence 3579999999999963
No 226
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=34.87 E-value=48 Score=35.83 Aligned_cols=31 Identities=13% Similarity=-0.011 Sum_probs=19.1
Q ss_pred HHHHHH-HhhcceEEEEEcCCcHHHHHHHHHH
Q 002143 705 IWTFLE-RASKLFEMHLYTMGNKLYATEMAKV 735 (960)
Q Consensus 705 L~EFLe-eLSk~YEIvIyTAgtreYAd~VLdi 735 (960)
+.++|+ ......-+++-|--+..=+..++..
T Consensus 24 l~~~l~~~~~~~~~~v~~TGRs~~~~~~~~~~ 55 (247)
T PF05116_consen 24 LEELLEQQARPEILFVYVTGRSLESVLRLLRE 55 (247)
T ss_dssp HHHHHHHHHCCGEEEEEE-SS-HHHHHHHHHH
T ss_pred HHHHHHHhhCCCceEEEECCCCHHHHHHHHHh
Confidence 446777 4455677777777777777777664
No 227
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=32.59 E-value=23 Score=36.46 Aligned_cols=16 Identities=31% Similarity=0.391 Sum_probs=13.7
Q ss_pred CeEEEEeCCCceeecc
Q 002143 646 KLCLVLDLDHTLLNSA 661 (960)
Q Consensus 646 KLTLVLDLDETLVHSs 661 (960)
-..+++||||||+.+.
T Consensus 4 ~~~viFD~DGTL~d~~ 19 (221)
T PRK10563 4 IEAVFFDCDGTLVDSE 19 (221)
T ss_pred CCEEEECCCCCCCCCh
Confidence 3578999999999875
No 228
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=31.84 E-value=2.1e+02 Score=29.62 Aligned_cols=59 Identities=12% Similarity=0.140 Sum_probs=39.0
Q ss_pred cceEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCCcccCCC-CcEEEEcCCC
Q 002143 714 KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSV 786 (960)
Q Consensus 714 k~YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIySRddc~~~~dGder~~yiKDLsrVLGrd-s~VVIVDDsp 786 (960)
..+.+.|.|.....++..+++.+.-. .+|.. + ... . ..++.+...++.. +.++.|.|+.
T Consensus 49 ~Gi~laIiT~k~~~~~~~~l~~lgi~-~~f~~-~--kpk------p----~~~~~~~~~l~~~~~ev~~iGD~~ 108 (169)
T TIGR02726 49 CGIDVAIITSKKSGAVRHRAEELKIK-RFHEG-I--KKK------T----EPYAQMLEEMNISDAEVCYVGDDL 108 (169)
T ss_pred CCCEEEEEECCCcHHHHHHHHHCCCc-EEEec-C--CCC------H----HHHHHHHHHcCcCHHHEEEECCCH
Confidence 56999999999999999999999765 35542 1 110 0 0122222234655 7899999986
No 229
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=30.96 E-value=26 Score=35.45 Aligned_cols=12 Identities=33% Similarity=0.545 Sum_probs=10.7
Q ss_pred EEEEeCCCceee
Q 002143 648 CLVLDLDHTLLN 659 (960)
Q Consensus 648 TLVLDLDETLVH 659 (960)
.+|+||||||+.
T Consensus 3 ~v~FD~DGTL~~ 14 (205)
T PRK13582 3 IVCLDLEGVLVP 14 (205)
T ss_pred EEEEeCCCCChh
Confidence 689999999993
No 230
>PLN02954 phosphoserine phosphatase
Probab=27.64 E-value=31 Score=35.53 Aligned_cols=18 Identities=17% Similarity=0.200 Sum_probs=14.3
Q ss_pred CCeEEEEeCCCceeeccc
Q 002143 645 RKLCLVLDLDHTLLNSAK 662 (960)
Q Consensus 645 kKLTLVLDLDETLVHSs~ 662 (960)
....+|+|+|+||+.+..
T Consensus 11 ~~k~viFDfDGTL~~~~~ 28 (224)
T PLN02954 11 SADAVCFDVDSTVCVDEG 28 (224)
T ss_pred cCCEEEEeCCCcccchHH
Confidence 356788999999998753
No 231
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=27.59 E-value=30 Score=36.59 Aligned_cols=15 Identities=33% Similarity=0.640 Sum_probs=13.1
Q ss_pred eEEEEeCCCceeecc
Q 002143 647 LCLVLDLDHTLLNSA 661 (960)
Q Consensus 647 LTLVLDLDETLVHSs 661 (960)
..+++|||||||.|.
T Consensus 3 ~avIFD~DGvLvDse 17 (221)
T COG0637 3 KAVIFDMDGTLVDSE 17 (221)
T ss_pred cEEEEcCCCCcCcch
Confidence 468999999999995
No 232
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=27.21 E-value=28 Score=40.70 Aligned_cols=16 Identities=38% Similarity=0.675 Sum_probs=14.0
Q ss_pred eEEEEeCCCceeeccc
Q 002143 647 LCLVLDLDHTLLNSAK 662 (960)
Q Consensus 647 LTLVLDLDETLVHSs~ 662 (960)
..+++||||||++|..
T Consensus 242 k~vIFDlDGTLiDs~~ 257 (459)
T PRK06698 242 QALIFDMDGTLFQTDK 257 (459)
T ss_pred hheeEccCCceecchh
Confidence 4799999999999863
No 233
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=25.38 E-value=94 Score=34.56 Aligned_cols=40 Identities=15% Similarity=0.235 Sum_probs=30.9
Q ss_pred EEEeeccCHHHHHHHhhcc-eEEEEEcCCcHHHHHHHHHHh
Q 002143 697 MWTKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVL 736 (960)
Q Consensus 697 ~yVkLRPgL~EFLeeLSk~-YEIvIyTAgtreYAd~VLdiL 736 (960)
.-+.+|.|+.+|++.|.++ -=+.||+||.-+-.+.+++.-
T Consensus 87 s~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~ 127 (246)
T PF05822_consen 87 SDIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQA 127 (246)
T ss_dssp S---B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHT
T ss_pred cchhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHc
Confidence 3588999999999999976 679999999999999999864
No 234
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=25.19 E-value=1.1e+02 Score=31.75 Aligned_cols=64 Identities=19% Similarity=0.183 Sum_probs=42.0
Q ss_pred EEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEeeccceEEEeeccCHHHHHHHhhcc-eEEEEEcCCcH
Q 002143 648 CLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FEMHLYTMGNK 726 (960)
Q Consensus 648 TLVLDLDETLVHSs~~~eldP~~~eil~~~ee~D~~~P~~~~F~l~~~~~yVkLRPgL~EFLeeLSk~-YEIvIyTAgtr 726 (960)
++|.|+||||--|... +.++. +-+.. +.|||+.+|+..+.+. |.++--|+-.-
T Consensus 1 VVvsDIDGTiT~SD~~-------G~i~~----------------~~G~d---~~h~g~~~l~~~i~~~GY~ilYlTaRp~ 54 (157)
T PF08235_consen 1 VVVSDIDGTITKSDVL-------GHILP----------------ILGKD---WTHPGAAELYRKIADNGYKILYLTARPI 54 (157)
T ss_pred CEEEeccCCcCccchh-------hhhhh----------------ccCch---hhhhcHHHHHHHHHHCCeEEEEECcCcH
Confidence 3789999999987421 11110 00111 5799999999999865 87777777665
Q ss_pred HHHHHHHHHhc
Q 002143 727 LYATEMAKVLD 737 (960)
Q Consensus 727 eYAd~VLdiLD 737 (960)
.-|...-++|.
T Consensus 55 ~qa~~Tr~~L~ 65 (157)
T PF08235_consen 55 GQANRTRSWLA 65 (157)
T ss_pred HHHHHHHHHHH
Confidence 66665555553
No 235
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=24.87 E-value=33 Score=35.99 Aligned_cols=13 Identities=46% Similarity=0.777 Sum_probs=11.2
Q ss_pred EEEeCCCceeecc
Q 002143 649 LVLDLDHTLLNSA 661 (960)
Q Consensus 649 LVLDLDETLVHSs 661 (960)
+++||||||++..
T Consensus 2 i~~DlDgTLl~~~ 14 (236)
T TIGR02471 2 IITDLDNTLLGDD 14 (236)
T ss_pred eEEeccccccCCH
Confidence 7899999999853
No 236
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=24.86 E-value=35 Score=35.91 Aligned_cols=13 Identities=31% Similarity=0.432 Sum_probs=11.1
Q ss_pred EEEEeCCCceeec
Q 002143 648 CLVLDLDHTLLNS 660 (960)
Q Consensus 648 TLVLDLDETLVHS 660 (960)
..|+|||+|||..
T Consensus 3 la~FDlD~TLi~~ 15 (203)
T TIGR02137 3 IACLDLEGVLVPE 15 (203)
T ss_pred EEEEeCCcccHHH
Confidence 3799999999964
No 237
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=24.38 E-value=43 Score=39.12 Aligned_cols=19 Identities=5% Similarity=0.218 Sum_probs=16.2
Q ss_pred cCCCeEEEEeCCCceeecc
Q 002143 643 SARKLCLVLDLDHTLLNSA 661 (960)
Q Consensus 643 s~kKLTLVLDLDETLVHSs 661 (960)
...-+.+|+|||||||.+.
T Consensus 128 ~~~~~~VIFDlDGTLIDS~ 146 (381)
T PLN02575 128 GCGWLGAIFEWEGVIIEDN 146 (381)
T ss_pred cCCCCEEEEcCcCcceeCH
Confidence 4567789999999999885
No 238
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=24.28 E-value=42 Score=34.28 Aligned_cols=16 Identities=38% Similarity=0.511 Sum_probs=13.8
Q ss_pred CeEEEEeCCCceeecc
Q 002143 646 KLCLVLDLDHTLLNSA 661 (960)
Q Consensus 646 KLTLVLDLDETLVHSs 661 (960)
-..+++|+|+||++..
T Consensus 4 ~k~i~FD~d~TL~d~~ 19 (229)
T COG1011 4 IKAILFDLDGTLLDFD 19 (229)
T ss_pred eeEEEEecCCcccccc
Confidence 4578999999999975
No 239
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=24.20 E-value=1.1e+02 Score=33.52 Aligned_cols=50 Identities=14% Similarity=0.301 Sum_probs=40.4
Q ss_pred EEeeccCHHHHHHHhhc---ceEEEEEcCCcHHHHHHHHHHhcCCCceeeeeeee
Q 002143 698 WTKLRPGIWTFLERASK---LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVIS 749 (960)
Q Consensus 698 yVkLRPgL~EFLeeLSk---~YEIvIyTAgtreYAd~VLdiLDP~g~lF~~RIyS 749 (960)
-+.+.||+.+||+.+++ .||++|-+.|...|-+.|++.-+-.. +|.. ||+
T Consensus 69 ~ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~~-~f~~-I~T 121 (234)
T PF06888_consen 69 SIPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHHGLRD-CFSE-IFT 121 (234)
T ss_pred cCCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCCcc-ccce-EEe
Confidence 36789999999999953 79999999999999999998766543 4553 554
No 240
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=23.25 E-value=1e+02 Score=37.15 Aligned_cols=45 Identities=20% Similarity=0.195 Sum_probs=38.8
Q ss_pred EeeccCHHHHHHHhhc-c-eEEEEEcCCcHHHHHHHHHHhcCCCceee
Q 002143 699 TKLRPGIWTFLERASK-L-FEMHLYTMGNKLYATEMAKVLDPKGVLFA 744 (960)
Q Consensus 699 VkLRPgL~EFLeeLSk-~-YEIvIyTAgtreYAd~VLdiLDP~g~lF~ 744 (960)
..+||++.+.|+++.+ . +.++|-|...+.+|..+++.++-+. +|.
T Consensus 383 d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi~~-~f~ 429 (556)
T TIGR01525 383 DQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGIDE-VHA 429 (556)
T ss_pred ccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCCCe-eec
Confidence 4589999999999976 4 8999999999999999999988743 443
No 241
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=23.24 E-value=42 Score=34.95 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=14.0
Q ss_pred CeEEEEeCCCceeecc
Q 002143 646 KLCLVLDLDHTLLNSA 661 (960)
Q Consensus 646 KLTLVLDLDETLVHSs 661 (960)
|.++++|+|+||+.+.
T Consensus 3 ~~~vifDfDgTi~~~d 18 (219)
T PRK09552 3 SIQIFCDFDGTITNND 18 (219)
T ss_pred CcEEEEcCCCCCCcch
Confidence 5689999999999875
No 242
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=22.36 E-value=44 Score=35.57 Aligned_cols=17 Identities=47% Similarity=0.544 Sum_probs=14.2
Q ss_pred CCCeEEEEeCCCceeec
Q 002143 644 ARKLCLVLDLDHTLLNS 660 (960)
Q Consensus 644 ~kKLTLVLDLDETLVHS 660 (960)
..+..+|+|||+||+..
T Consensus 3 ~~~~L~vFD~D~TLi~~ 19 (212)
T COG0560 3 RMKKLAVFDLDGTLINA 19 (212)
T ss_pred CccceEEEecccchhhH
Confidence 35678999999999983
No 243
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=21.28 E-value=88 Score=36.04 Aligned_cols=40 Identities=18% Similarity=0.180 Sum_probs=30.9
Q ss_pred EEEeecc-CHHHHHHHhhc------ceEEEEEcCCcHHHHHHHHHHh
Q 002143 697 MWTKLRP-GIWTFLERASK------LFEMHLYTMGNKLYATEMAKVL 736 (960)
Q Consensus 697 ~yVkLRP-gL~EFLeeLSk------~YEIvIyTAgtreYAd~VLdiL 736 (960)
+.++-|| ++.+-|+.|.+ .|+|+|+-.|...-+..+++..
T Consensus 6 v~ayNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~~v~~~ 52 (334)
T cd02514 6 VIACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADVAKSF 52 (334)
T ss_pred EEecCCHHHHHHHHHHHHhccccCCCceEEEEeCCCchHHHHHHHhh
Confidence 4577899 69999998875 4899999999877655665544
No 244
>PLN02940 riboflavin kinase
Probab=21.17 E-value=44 Score=38.48 Aligned_cols=16 Identities=50% Similarity=0.665 Sum_probs=13.5
Q ss_pred eEEEEeCCCceeeccc
Q 002143 647 LCLVLDLDHTLLNSAK 662 (960)
Q Consensus 647 LTLVLDLDETLVHSs~ 662 (960)
..+++||||||+.+..
T Consensus 12 k~VIFDlDGTLvDt~~ 27 (382)
T PLN02940 12 SHVILDLDGTLLNTDG 27 (382)
T ss_pred CEEEECCcCcCCcCHH
Confidence 4589999999998853
No 245
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=20.63 E-value=53 Score=33.58 Aligned_cols=47 Identities=11% Similarity=0.005 Sum_probs=26.9
Q ss_pred CCCChhHHHHHHHhCCEEecccCCCccEEEecCCCCHHHHHHHhCCCcEEcHHHH
Q 002143 887 NPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPGWV 941 (960)
Q Consensus 887 npe~~~LwklAe~LGAtVssdVd~kVTHLVAss~gT~Kv~~Alk~GI~IVSpdWL 941 (960)
+|+...+...++.+|.. +.-+.+| .. ...-+..|++.|++.|...+-
T Consensus 141 KP~p~~~~~~~~~~~~~------p~~~l~v-gD-~~~di~aA~~aG~~~i~~~~~ 187 (199)
T PRK09456 141 KPEARIYQHVLQAEGFS------AADAVFF-DD-NADNIEAANALGITSILVTDK 187 (199)
T ss_pred CCCHHHHHHHHHHcCCC------hhHeEEe-CC-CHHHHHHHHHcCCEEEEecCC
Confidence 45444455667777732 2223333 22 233478888899887766553
Done!