BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002148
(959 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2X1G|F Chain F, Crystal Structure Of Importin13 - Mago-Y14 Complex
pdb|2X1G|G Chain G, Crystal Structure Of Importin13 - Mago-Y14 Complex
Length = 971
Score = 123 bits (308), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 200/949 (21%), Positives = 377/949 (39%), Gaps = 110/949 (11%)
Query: 29 WLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLN 88
WL D + + AWQ + L+ S E F + TL SK+ + E+P E L+ +
Sbjct: 30 WLTDAEASPQAWQFSWQLMQLGKSQ-EVQFFGAITLHSKLMKHWHEVPPENREELKQKIL 88
Query: 89 TLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGG--GIVNWLRDEMNSHPEFVPG--- 143
+ +F GP V ++ I++ A VH+ E W G ++N +++ P
Sbjct: 89 ESIVRFAGGPKIVLNRLCISLGAYIVHMLGE-WPGAIEEVINTFQNQ--RMPNVSADVQL 145
Query: 144 --FLELLTVLPEE-----------VFNYKIAARPE-------------RRRQFEKELTSQ 177
LE+LT +PEE V +IA R + R ++ E S
Sbjct: 146 WIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSN 205
Query: 178 MEVALSTL-TACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILS 236
M A+ + T +I E + A L + H+ + + +TA + +E
Sbjct: 206 MNRAVKCVGTWIKNIGYTIEGCVTITAVLLEVVHKCYWPCIHAGDGCMTADENELAESCL 265
Query: 237 EASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKA-IARL 295
+ VN+I I A V LI++ + + + D ED+ I L
Sbjct: 266 KTMVNII---IQPDCHNYPKTAFV---LIKMFLDSLSEITKTEWKRENDNEDIIVHIYML 319
Query: 296 FADMGDSYVELIATG-----SDESML---IVHALLEVASHP-----EYDIASMTFNFWHS 342
F + + L+ +G + S+L IV +L P E ++M FW+
Sbjct: 320 FVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYM 379
Query: 343 LQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQ--DLSLE 400
LQ D + N+ ++ + + + Y L ++ + + P + S +
Sbjct: 380 LQ------DEVFAMSNDE----QKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSD 429
Query: 401 DLKEFKHTRYAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCI 460
DL+ F+ R ++D + VL D L+IL E +A W EA ++
Sbjct: 430 DLECFRCYRQDISDTFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSF 488
Query: 461 RAISTYVSVVEAEVMPQVM---AXXXXXXXXXXXXXTVCLTIGAYSKWFDAASSDPSILA 517
++++ + E +P++M A T T+G+Y W +P+ +
Sbjct: 489 QSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWL---MENPAYIP 545
Query: 518 SVLSILTSGMSTSEDTXXXXXXXFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSA 577
+++L G+++S + +C DC+ +L Y D L N ++N G +K S
Sbjct: 546 PAINLLVRGLNSS--MSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNT-GRMKNS- 601
Query: 578 EDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHP--RDLTV 635
DS+ L+ ++ +++ L + K L+++ P LQ I K P R T+
Sbjct: 602 -DSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQAD-----SKTPAARIRTI 655
Query: 636 -HIDRFAYIFRYVN---------HP--EAVADAIQRLWPIFKAIFDIRAWDMRTMESLCR 683
++ + +F +N P + V +QR PIFK I ++ ++ +E+ C
Sbjct: 656 FRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACS 715
Query: 684 ACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNL 743
A K+A+ + + + I +Q L +S I +F D C + L
Sbjct: 716 AMKHAITNLRSSFQPMLQDLCLFIVASFQTRCCAPTLEISKTAIVMFFKDEGCKPLMQQL 775
Query: 744 IEALFKRTTCLLTSIEE--FTSRPDVADDCFLLASRCIRYCPQLFIPSSV-FPSLVDCSM 800
+ + + L S E F++ D + F ++ I+ PQ+ ++ + LV +
Sbjct: 776 LREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQ 835
Query: 801 IGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGAL 860
G+T+ A + + FL+ +++ + V++ G + +
Sbjct: 836 RGMTLPESGAIRNSIQFLTHFVMQSRN------HAHVTEVVLATGEQTLYTAMMCVGYLT 889
Query: 861 PSSRLETVTYALLALTRAYGVRSLEWAKESVSL--IPLTALAEVERSRF 907
P S+++ LLA+ R Y W K +S P + + +++R+
Sbjct: 890 PRSQVDKFADILLAMNRKYAAEMAVWMKSLMSTPNFPTQLITDADKTRY 938
>pdb|2XWU|B Chain B, Crystal Structure Of Importin 13 - Ubc9 Complex
Length = 963
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 180/828 (21%), Positives = 351/828 (42%), Gaps = 89/828 (10%)
Query: 6 TVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLH-DATSNLETLIFCSQTL 64
V++AL+ LY+ P+ + A +WL Q + AW + LL D ++ F + L
Sbjct: 25 NVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPDKVPEIQ--YFGASAL 82
Query: 65 RSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDW--G 122
K+ R ++P++ L+ L T + +F G V T++ +A+A+LA+ + + W
Sbjct: 83 HIKISRYWSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCA 142
Query: 123 GGGIVNWLRDEMNSHPEFVPG------FLELLTVLPEEVFNYKIAARPERRRQFEK-ELT 175
+V + E + V G LELLTVLPEE ++ + P+ R+ + L
Sbjct: 143 VADMVRLFQAEDSP----VDGQGRCLALLELLTVLPEE---FQTSRLPQYRKGLVRTSLA 195
Query: 176 SQMEVALSTLTACLHINE----LKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLH 231
+ L L ++++VL+ F+SW++L+ +P + L+ A ++L
Sbjct: 196 VECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLE--VP--LQDCEALIQAAFAALQ 251
Query: 232 SEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDS--SKDEEDV 289
L ++SV I I S A + + ++P ++ L+ L + + D E
Sbjct: 252 DSELFDSSVEAIVNAI------SQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETS 305
Query: 290 KAIARLFADMGDSYVELIATGSD--ESML-IVHALLEVASHPEY-----DIASMTFNFWH 341
I R+ +G+++ + + +S L +V+ ++ P + +S+T FW+
Sbjct: 306 HGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWY 365
Query: 342 SLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQD--YQDLSL 399
+LQ D +SF E A + QV+R Y LV ++ + Q+P D Y S
Sbjct: 366 TLQ------DDILSFEAEKQAVYQ-----QVYRPVYFQLVDVLLHKAQFPSDEEYGFWSS 414
Query: 400 EDLKEFKHTRYAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFC 459
++ ++F+ R ++D L+ +LG + L LY K + ++ W+ EA L+
Sbjct: 415 DEKEQFRIYRVDISDTLMYVYEMLGAE-LLSNLYDKLGRLLTSSEEPYS-WQHTEALLYG 472
Query: 460 IRAISTYVSVVEAEVMPQVMAXXXXXXXXXXXXX-TVCLTIGAYSKWFDAASSDPSILAS 518
++I+ + V ++V+P ++ TV TIGA S+W + P ++ S
Sbjct: 473 FQSIAETIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWL---ADHPVMINS 529
Query: 519 VLSILTSGMSTSEDTXXXXXXXFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAE 578
VL ++ + E + IC +C+ L Y + V + + +
Sbjct: 530 VLPLVLHALGNPE-LSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIH---KTS 585
Query: 579 DSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHID 638
+ L++AL +++ L + K L L P + L+++ + P K + +
Sbjct: 586 QCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLS 645
Query: 639 RFAYIFRYVNHPEAVADAIQRLWPI-----------------FKAIFDIRAWDMRTMESL 681
+H + R P+ + + D + +E++
Sbjct: 646 NLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAV 705
Query: 682 CRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLH 741
C + +V+T + + E + +Y Q L L+ +++ IF +P+
Sbjct: 706 CAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQASALDLTRQLVHIFAHEPAHFPP-- 763
Query: 742 NLIEALFKRTTCLLTSIEEFTSR--PDVADDCFLLASRCIRYCPQLFI 787
IEALF T + ++ + R PD+ D L ++ ++ P LF+
Sbjct: 764 --IEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFL 809
>pdb|2X19|B Chain B, Crystal Structure Of Importin13 - Rangtp Complex
Length = 963
Score = 102 bits (254), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 186/829 (22%), Positives = 350/829 (42%), Gaps = 91/829 (10%)
Query: 6 TVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLH-DATSNLETLIFCSQTL 64
V++AL+ LY+ P+ + A +WL Q + AW + LL D ++ F + L
Sbjct: 25 NVEKALHQLYYDPNIENKNLAQKWLXQAQVSPQAWHFSWQLLQPDKVPEIQ--YFGASAL 82
Query: 65 RSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGG 124
K+ R ++P++ L+ L T + +F G V T++ +A+A+LA+ + W
Sbjct: 83 HIKISRYWSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSXXPDAW-PC 141
Query: 125 GIVNWLR-DEMNSHPEFVPG----FLELLTVLPEEVFNYKIAARPERRRQFEK-ELTSQM 178
+ + +R + P G LELLTVLPEE ++ + P+ R+ + L +
Sbjct: 142 AVADXVRLFQAEDSPVDGQGRCLALLELLTVLPEE---FQTSRLPQYRKGLVRTSLAVEC 198
Query: 179 EVALSTLTACLHINE----LKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEI 234
L L ++++VL+ F+SW++L+ +P + L+ A ++L
Sbjct: 199 GAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLE--VP--LQDCEALIQAAFAALQDSE 254
Query: 235 LSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDS--SKDEEDVKAI 292
L ++SV I I S A + + ++P ++ L+ L + + D E I
Sbjct: 255 LFDSSVEAIVNAI------SQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDXETSHGI 308
Query: 293 ARLFADMGDSYVELIATGSD--ESML-IVHALLEVASHPEY-----DIASMTFNFWHSLQ 344
R+ +G+++ + + +S L +V+ + P + +S+T FW++LQ
Sbjct: 309 CRIAVALGENHSRALLDQVEHWQSFLALVNXIXFCTGIPGHYPVNETTSSLTLTFWYTLQ 368
Query: 345 VILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQD--YQDLSLEDL 402
D +SF E A + QV+R Y LV ++ + Q+P D Y S ++
Sbjct: 369 ------DDILSFEAEKQAVYQ-----QVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEK 417
Query: 403 KEFKHTRYAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRA 462
++F+ R ++D L LG + L LY K + ++ W+ EA L+ ++
Sbjct: 418 EQFRIYRVDISDTLXYVYEXLGAE-LLSNLYDKLGRLLTSSEEPYS-WQHTEALLYGFQS 475
Query: 463 ISTYVSVVEAEVMPQVMAXXXXXXXXXXXXX-TVCLTIGAYSKWFDAASSDPSILASVLS 521
I+ + V ++V+P ++ TV TIGA S+W + P + SVL
Sbjct: 476 IAETIDVNYSDVVPGLIGLIPRISISNVQLADTVXFTIGALSEWL---ADHPVXINSVLP 532
Query: 522 ILTSGMSTSEDTXXXXXXXFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSL 581
++ + E + IC +C+ L Y + V + + +
Sbjct: 533 LVLHALGNPE-LSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLXKQIH---KTSQCX 588
Query: 582 HLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHI---- 637
L +AL +++ L + K L L P + L+++ + P K VHI
Sbjct: 589 WLXQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKL----AIVHILGLL 644
Query: 638 --------------DRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRA-W--DMRTMES 680
D R + P+ + L +F+ I + + W D + +E+
Sbjct: 645 SNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEA 704
Query: 681 LCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYL 740
+C + +V+T + + E + Y Q L L+ +++ IF +P+
Sbjct: 705 VCAIFEKSVKTLLDDFAPXVPQLCEXLGRXYSTIPQASALDLTRQLVHIFAHEPAH---- 760
Query: 741 HNLIEALFKRTTCLLTSIEEFTSR--PDVADDCFLLASRCIRYCPQLFI 787
IEALF T + ++ + R PD+ D L ++ ++ P LF+
Sbjct: 761 FPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFXQLLAQALKRKPDLFL 809
>pdb|3TYX|A Chain A, Crystal Structure Of The F177s Mutant Of Mycrocine
Immunity Protein (Mccf) With Amp
pdb|3TYX|B Chain B, Crystal Structure Of The F177s Mutant Of Mycrocine
Immunity Protein (Mccf) With Amp
Length = 336
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 638 DRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMG 697
D + Y + H +A+ I++ P+F + I W+ +T E R + T+ + G
Sbjct: 151 DTYKYFLETLLHDQALPYNIKQ--PLFWSDESIN-WEEKTKEKELRPNNWISVTNGQATG 207
Query: 698 ITIGAILEEIQGLYQQHQQPC 718
IG L IQG++ PC
Sbjct: 208 RVIGGNLNTIQGIWGSPYMPC 228
>pdb|3GJZ|A Chain A, Crystal Structure Of Microcin Immunity Protein Mccf From
Bacillus Anthracis Str. Ames
pdb|3GJZ|B Chain B, Crystal Structure Of Microcin Immunity Protein Mccf From
Bacillus Anthracis Str. Ames
Length = 336
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 638 DRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMG 697
D + Y + H +A+ I++ P+F + + W+ +T E R + T+ + G
Sbjct: 151 DTYKYFLETLLHDQALPYNIKQ--PLFWSD-EFINWEEKTKEKELRPNNWISVTNGQATG 207
Query: 698 ITIGAILEEIQGLYQQHQQPC 718
IG L IQG++ PC
Sbjct: 208 RVIGGNLNTIQGIWGSPYXPC 228
>pdb|3T5M|A Chain A, Crystal Structure Of The S112a Mutant Of Mycrocine
Immunity Protein (Mccf) With Amp
pdb|3T5M|B Chain B, Crystal Structure Of The S112a Mutant Of Mycrocine
Immunity Protein (Mccf) With Amp
Length = 336
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 638 DRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMG 697
D + Y + H +A+ I++ P+F + + W+ +T E R + T+ + G
Sbjct: 151 DTYKYFLETLLHDQALPYNIKQ--PLFWSD-EFINWEEKTKEKELRPNNWISVTNGQATG 207
Query: 698 ITIGAILEEIQGLYQQHQQPC 718
IG L IQG++ PC
Sbjct: 208 RVIGGNLNTIQGIWGSPYMPC 228
>pdb|3U1B|A Chain A, Crystal Structure Of The S238r Mutant Of Mycrocine
Immunity Protein (Mccf) With Amp
pdb|3U1B|B Chain B, Crystal Structure Of The S238r Mutant Of Mycrocine
Immunity Protein (Mccf) With Amp
Length = 336
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 638 DRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMG 697
D + Y + H +A+ I++ P+F + + W+ +T E R + T+ + G
Sbjct: 151 DTYKYFLETLLHDQALPYNIKQ--PLFWSD-EFINWEEKTKEKELRPNNWISVTNGQATG 207
Query: 698 ITIGAILEEIQGLYQQHQQPC 718
IG L IQG++ PC
Sbjct: 208 RVIGGNLNTIQGIWGSPYMPC 228
>pdb|3HX3|A Chain A, Crystal Structure Of Cralbp Mutant R234w
Length = 316
Score = 33.5 bits (75), Expect = 0.54, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 366 RSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLK 403
R+R+ V R AYE L V+FR+QYP+ + LS E ++
Sbjct: 100 RARKFNVGR-AYELLRGYVNFRLQYPELFDSLSPEAVR 136
>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp
Length = 316
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 366 RSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLK 403
R+R+ V R AYE L V+FR+QYP+ + LS E ++
Sbjct: 100 RARKFNVGR-AYELLRGYVNFRLQYPELFDSLSPEAVR 136
>pdb|3HUT|A Chain A, Crystal Structure Of A Putative Branched-Chain Amino Acid
Abc Transporter From Rhodospirillum Rubrum
Length = 358
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 26/124 (20%)
Query: 215 SVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMS 274
++L + L LT ++ + + EA+ +L ++AAG GG V++
Sbjct: 4 ALLLGYELPLTGANAAYGRVFQEAAR---LQLDRFNAAGGVGGRPVDI------------ 48
Query: 275 LKAHLTDSSKDEEDVKAIARLFAD-------MGD-SYVELIATGSDESMLIVHALLEVAS 326
DS D + + IAR F D +GD S A GS L A+
Sbjct: 49 ---LYADSRDDADQARTIARAFVDDPRVVGVLGDFSSTVSXAAGSIYGKEGXPQLSPTAA 105
Query: 327 HPEY 330
HP+Y
Sbjct: 106 HPDY 109
>pdb|4HKU|A Chain A, The Crystal Structure Of Tetr Transcriptional Regulator
(Lmo2814) From Listeria Monocytogenes Egd-E
pdb|4HKU|B Chain B, The Crystal Structure Of Tetr Transcriptional Regulator
(Lmo2814) From Listeria Monocytogenes Egd-E
Length = 178
Score = 30.4 bits (67), Expect = 5.3, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 5 NTVKEALNALYHHPDDAVRMQADRWLQD-----FQHTIDAWQVADNLLHD 49
N AL Y + +D + A RWL++ F T DA Q D+ LHD
Sbjct: 38 NVTHAALYKHYRNKEDLFQKLALRWLEETSREIFAWTQDAGQTPDDALHD 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,064,510
Number of Sequences: 62578
Number of extensions: 938703
Number of successful extensions: 2529
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2507
Number of HSP's gapped (non-prelim): 13
length of query: 959
length of database: 14,973,337
effective HSP length: 108
effective length of query: 851
effective length of database: 8,214,913
effective search space: 6990890963
effective search space used: 6990890963
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)