Query 002148
Match_columns 959
No_of_seqs 201 out of 1521
Neff 9.8
Searched_HMMs 46136
Date Thu Mar 28 17:35:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002148.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002148hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2022 Nuclear transport rece 100.0 2.3E-95 5E-100 795.4 81.0 896 1-937 1-977 (982)
2 KOG2021 Nuclear mRNA export fa 100.0 5.4E-73 1.2E-77 606.8 61.2 880 4-932 2-974 (980)
3 KOG2081 Nuclear transport regu 100.0 3.4E-66 7.3E-71 546.9 47.7 548 24-613 2-557 (559)
4 COG5101 CRM1 Importin beta-rel 100.0 1.2E-55 2.7E-60 463.8 63.2 905 4-935 13-1029(1053)
5 KOG2023 Nuclear transport rece 100.0 1.5E-43 3.3E-48 376.1 41.3 726 5-891 13-789 (885)
6 KOG2171 Karyopherin (importin) 100.0 2.5E-36 5.4E-41 344.5 64.3 597 4-712 3-616 (1075)
7 KOG2020 Nuclear transport rece 100.0 4.4E-31 9.4E-36 308.9 59.1 889 4-929 9-1004(1041)
8 KOG1991 Nuclear transport rece 100.0 2.1E-27 4.6E-32 266.3 63.6 713 7-805 6-780 (1010)
9 KOG1241 Karyopherin (importin) 100.0 3.5E-26 7.7E-31 248.8 57.5 617 17-733 12-673 (859)
10 COG5215 KAP95 Karyopherin (imp 99.9 6.4E-19 1.4E-23 185.9 56.8 667 17-799 16-728 (858)
11 KOG1992 Nuclear export recepto 99.9 8.9E-19 1.9E-23 192.9 54.5 661 2-796 2-725 (960)
12 KOG1410 Nuclear transport rece 99.8 2.5E-13 5.5E-18 146.4 65.9 782 1-823 1-937 (1082)
13 COG5656 SXM1 Importin, protein 99.8 4.7E-13 1E-17 146.5 64.3 616 17-712 14-691 (970)
14 KOG2274 Predicted importin 9 [ 99.8 5.7E-14 1.2E-18 157.2 48.1 499 5-595 4-562 (1005)
15 PF08389 Xpo1: Exportin 1-like 99.7 3.6E-17 7.9E-22 157.1 9.9 141 98-243 1-148 (148)
16 PF08767 CRM1_C: CRM1 C termin 99.7 1.9E-15 4.1E-20 161.6 21.8 229 696-936 65-316 (319)
17 KOG1993 Nuclear transport rece 99.6 7.2E-11 1.6E-15 130.8 48.9 169 8-189 3-181 (978)
18 KOG2171 Karyopherin (importin) 99.4 5.6E-06 1.2E-10 97.5 65.3 330 447-793 400-775 (1075)
19 COG5657 CSE1 CAS/CSE protein i 99.3 7.9E-08 1.7E-12 109.3 40.8 130 1-137 1-135 (947)
20 KOG1241 Karyopherin (importin) 99.2 2.1E-05 4.6E-10 88.3 53.3 269 447-733 418-716 (859)
21 KOG1824 TATA-binding protein-i 99.0 5.7E-05 1.2E-09 86.6 48.5 663 43-823 7-722 (1233)
22 PF03810 IBN_N: Importin-beta 98.9 3.2E-09 6.9E-14 88.6 7.1 67 26-92 1-76 (77)
23 KOG2023 Nuclear transport rece 98.8 0.00037 8.1E-09 77.2 44.4 573 219-892 126-747 (885)
24 KOG4541 Nuclear transport rece 98.5 7.7E-05 1.7E-09 80.5 26.7 402 515-935 296-742 (748)
25 PF08506 Cse1: Cse1; InterPro 98.3 0.00015 3.4E-09 79.1 24.2 200 316-541 141-370 (370)
26 KOG0915 Uncharacterized conser 98.3 0.014 3.1E-07 71.2 40.1 180 370-568 989-1182(1702)
27 COG5215 KAP95 Karyopherin (imp 98.0 0.005 1.1E-07 67.4 26.9 359 473-891 321-725 (858)
28 KOG1242 Protein containing ada 98.0 0.022 4.8E-07 63.9 32.3 165 413-596 240-448 (569)
29 KOG0213 Splicing factor 3b, su 98.0 0.063 1.4E-06 60.9 41.1 180 406-594 730-914 (1172)
30 KOG1824 TATA-binding protein-i 97.8 0.15 3.3E-06 59.7 56.7 161 448-616 491-662 (1233)
31 PF03378 CAS_CSE1: CAS/CSE pro 97.5 0.0033 7.1E-08 70.4 17.2 234 549-857 17-252 (435)
32 PF01602 Adaptin_N: Adaptin N 97.3 0.36 7.7E-06 57.0 32.7 203 448-692 91-298 (526)
33 PF01602 Adaptin_N: Adaptin N 97.3 0.68 1.5E-05 54.6 35.5 453 17-588 53-520 (526)
34 KOG0212 Uncharacterized conser 97.2 0.17 3.7E-06 56.0 24.4 369 448-853 12-443 (675)
35 KOG1991 Nuclear transport rece 96.6 2.7 5.8E-05 50.3 62.4 129 195-328 106-238 (1010)
36 KOG0915 Uncharacterized conser 96.5 3.7 8E-05 51.5 34.6 97 447-547 968-1069(1702)
37 KOG1062 Vesicle coat complex A 96.3 3.5 7.5E-05 48.3 32.0 187 311-547 345-545 (866)
38 KOG1059 Vesicle coat complex A 96.1 3.8 8.2E-05 47.3 33.3 217 80-344 142-364 (877)
39 PTZ00429 beta-adaptin; Provisi 95.8 6.4 0.00014 47.6 41.5 127 16-154 78-209 (746)
40 PF12755 Vac14_Fab1_bd: Vacuol 95.6 0.044 9.5E-07 47.2 6.9 75 492-568 3-78 (97)
41 PF10508 Proteasom_PSMB: Prote 95.5 6.7 0.00015 45.6 29.5 131 449-593 51-190 (503)
42 PF14500 MMS19_N: Dos2-interac 95.3 1.1 2.3E-05 46.9 17.3 226 487-733 11-242 (262)
43 PF12460 MMS19_C: RNAPII trans 95.1 7.6 0.00017 44.0 31.6 179 448-645 202-394 (415)
44 PTZ00429 beta-adaptin; Provisi 94.7 14 0.0003 44.8 33.9 103 474-589 137-245 (746)
45 KOG0213 Splicing factor 3b, su 94.4 13 0.00028 43.2 32.1 175 488-693 489-668 (1172)
46 PF10508 Proteasom_PSMB: Prote 94.1 15 0.00033 42.7 28.7 339 413-784 59-424 (503)
47 smart00802 UME Domain in UVSB 94.0 0.61 1.3E-05 40.9 10.0 92 516-614 9-105 (107)
48 PF12755 Vac14_Fab1_bd: Vacuol 93.9 0.13 2.7E-06 44.4 5.5 91 453-545 3-95 (97)
49 KOG1992 Nuclear export recepto 93.7 19 0.0004 42.7 46.7 228 697-932 543-789 (960)
50 KOG1242 Protein containing ada 93.5 18 0.00038 41.5 32.2 361 488-911 69-439 (569)
51 PF08767 CRM1_C: CRM1 C termin 93.1 2.4 5.2E-05 45.9 14.9 171 194-386 43-221 (319)
52 PF12460 MMS19_C: RNAPII trans 93.0 20 0.00043 40.7 30.1 57 767-824 339-395 (415)
53 KOG2081 Nuclear transport regu 92.9 1.5 3.2E-05 49.2 12.9 246 700-953 151-415 (559)
54 PF03378 CAS_CSE1: CAS/CSE pro 92.9 3.5 7.7E-05 46.5 16.4 288 515-824 23-325 (435)
55 PLN03200 cellulose synthase-in 92.4 53 0.0012 44.3 55.3 387 450-887 460-870 (2102)
56 PF08064 UME: UME (NUC010) dom 92.3 1.8 3.9E-05 38.2 10.4 90 518-614 11-105 (107)
57 PF12348 CLASP_N: CLASP N term 92.0 1.3 2.9E-05 45.4 11.1 137 447-595 18-163 (228)
58 PF13513 HEAT_EZ: HEAT-like re 92.0 0.19 4E-06 38.2 3.4 54 489-544 1-55 (55)
59 cd00020 ARM Armadillo/beta-cat 91.8 0.37 8E-06 43.5 5.9 95 448-546 19-120 (120)
60 COG5181 HSH155 U2 snRNP splice 91.7 22 0.00048 40.5 19.7 89 515-611 601-694 (975)
61 KOG1248 Uncharacterized conser 90.6 54 0.0012 40.8 55.1 183 676-881 712-902 (1176)
62 PF13513 HEAT_EZ: HEAT-like re 90.3 0.12 2.7E-06 39.2 1.0 52 450-501 1-54 (55)
63 KOG1059 Vesicle coat complex A 88.7 56 0.0012 38.3 23.3 97 459-563 129-227 (877)
64 KOG0166 Karyopherin (importin) 88.0 33 0.00072 39.0 18.0 251 532-824 125-394 (514)
65 PF02985 HEAT: HEAT repeat; I 87.9 0.58 1.3E-05 30.6 2.7 29 520-548 2-31 (31)
66 KOG2256 Predicted protein invo 86.4 72 0.0016 37.1 22.6 227 475-710 243-476 (661)
67 KOG2021 Nuclear mRNA export fa 85.3 87 0.0019 37.0 24.2 83 531-622 711-793 (980)
68 KOG1240 Protein kinase contain 85.2 1E+02 0.0022 38.7 20.7 124 475-611 619-744 (1431)
69 PF12717 Cnd1: non-SMC mitotic 84.7 20 0.00043 35.1 13.0 145 456-612 8-157 (178)
70 PF08167 RIX1: rRNA processing 83.8 15 0.00032 35.4 11.4 132 428-566 22-163 (165)
71 KOG0212 Uncharacterized conser 83.0 92 0.002 35.5 28.8 268 523-824 5-280 (675)
72 COG5181 HSH155 U2 snRNP splice 82.4 1E+02 0.0022 35.6 37.4 97 471-569 598-699 (975)
73 KOG1058 Vesicle coat complex C 82.4 1.1E+02 0.0025 36.1 20.0 162 316-529 317-481 (948)
74 PF10274 ParcG: Parkin co-regu 82.3 11 0.00024 36.6 9.5 90 516-610 36-129 (183)
75 KOG0168 Putative ubiquitin fus 82.2 1.2E+02 0.0027 36.4 22.4 168 449-621 225-438 (1051)
76 KOG2753 Uncharacterized conser 82.0 35 0.00077 36.0 13.4 74 515-595 104-179 (378)
77 PF12348 CLASP_N: CLASP N term 80.7 56 0.0012 33.3 15.3 174 634-822 25-205 (228)
78 PF05918 API5: Apoptosis inhib 79.8 1.3E+02 0.0028 35.1 20.8 70 489-568 36-106 (556)
79 PF08623 TIP120: TATA-binding 79.1 10 0.00023 36.3 8.2 76 490-569 42-117 (169)
80 PF08506 Cse1: Cse1; InterPro 79.0 1.1E+02 0.0024 33.9 22.3 124 678-808 228-360 (370)
81 PF08167 RIX1: rRNA processing 78.3 13 0.00029 35.8 8.9 128 744-888 23-154 (165)
82 PF11864 DUF3384: Domain of un 78.2 1.2E+02 0.0026 35.0 18.2 179 636-826 10-209 (464)
83 COG5064 SRP1 Karyopherin (impo 78.0 43 0.00093 35.4 12.6 175 447-647 127-316 (526)
84 PF04826 Arm_2: Armadillo-like 77.9 93 0.002 32.4 18.3 132 449-593 26-164 (254)
85 KOG1943 Beta-tubulin folding c 77.5 1.9E+02 0.0042 35.9 19.6 132 451-594 443-613 (1133)
86 PF13646 HEAT_2: HEAT repeats; 77.1 19 0.00041 30.0 8.7 87 8-110 2-88 (88)
87 KOG0166 Karyopherin (importin) 77.1 1.4E+02 0.0031 34.1 25.8 335 452-823 127-486 (514)
88 KOG2274 Predicted importin 9 [ 76.9 1.8E+02 0.004 35.3 23.2 224 472-716 525-764 (1005)
89 PRK09687 putative lyase; Provi 74.9 1.2E+02 0.0026 32.2 19.0 119 449-590 67-186 (280)
90 KOG2956 CLIP-associating prote 74.8 1.5E+02 0.0032 33.3 16.1 175 496-704 314-492 (516)
91 PRK09687 putative lyase; Provi 74.4 1.2E+02 0.0027 32.1 17.5 212 8-247 26-249 (280)
92 KOG2022 Nuclear transport rece 73.3 2.2E+02 0.0048 34.6 31.9 155 488-667 480-641 (982)
93 PF13646 HEAT_2: HEAT repeats; 72.0 11 0.00025 31.4 6.1 56 7-64 32-87 (88)
94 PF12719 Cnd3: Nuclear condens 71.1 1.5E+02 0.0033 31.7 17.5 128 456-593 3-144 (298)
95 PF12717 Cnd1: non-SMC mitotic 70.5 65 0.0014 31.5 11.8 54 488-547 1-55 (178)
96 PF11229 DUF3028: Protein of u 70.3 2E+02 0.0043 32.7 18.4 193 472-694 149-350 (589)
97 PF11865 DUF3385: Domain of un 69.3 70 0.0015 30.6 11.3 70 518-592 86-157 (160)
98 KOG1967 DNA repair/transcripti 66.9 41 0.0009 40.5 10.7 167 521-707 818-1000(1030)
99 KOG1240 Protein kinase contain 65.4 3.7E+02 0.0081 34.1 19.3 272 20-350 437-730 (1431)
100 COG5101 CRM1 Importin beta-rel 61.9 2.1E+02 0.0045 33.3 14.4 163 658-823 191-371 (1053)
101 KOG1525 Sister chromatid cohes 59.4 5.2E+02 0.011 33.7 23.5 226 636-890 22-264 (1266)
102 PF04388 Hamartin: Hamartin pr 59.3 1.7E+02 0.0038 35.3 14.6 114 763-891 80-206 (668)
103 PF10363 DUF2435: Protein of u 57.8 93 0.002 26.5 8.7 74 527-606 12-86 (92)
104 smart00802 UME Domain in UVSB 56.9 1.1E+02 0.0024 26.9 9.2 54 679-732 33-87 (107)
105 KOG1020 Sister chromatid cohes 56.7 5.8E+02 0.013 33.4 26.0 74 515-595 813-887 (1692)
106 PF12231 Rif1_N: Rap1-interact 55.1 3.4E+02 0.0073 30.2 17.6 39 786-824 266-304 (372)
107 PF02985 HEAT: HEAT repeat; I 53.9 20 0.00043 23.2 3.2 21 447-467 11-31 (31)
108 PF12422 Condensin2nSMC: Conde 53.4 44 0.00096 31.6 6.7 86 851-950 36-122 (152)
109 PF05918 API5: Apoptosis inhib 52.8 4.4E+02 0.0095 30.9 20.5 19 672-690 144-162 (556)
110 KOG1967 DNA repair/transcripti 50.5 2.8E+02 0.006 34.0 13.6 143 375-538 863-1016(1030)
111 KOG1062 Vesicle coat complex A 50.0 5.4E+02 0.012 31.1 24.6 259 634-946 125-408 (866)
112 KOG4653 Uncharacterized conser 48.9 5.9E+02 0.013 31.2 16.9 186 489-700 741-928 (982)
113 KOG1061 Vesicle coat complex A 48.5 5.6E+02 0.012 30.8 20.0 66 700-776 458-527 (734)
114 PF08389 Xpo1: Exportin 1-like 46.8 48 0.001 30.9 6.1 133 677-817 4-147 (148)
115 KOG1993 Nuclear transport rece 46.1 6.2E+02 0.013 30.7 25.7 62 635-699 591-653 (978)
116 cd00020 ARM Armadillo/beta-cat 46.0 89 0.0019 27.4 7.5 98 10-113 11-119 (120)
117 KOG0168 Putative ubiquitin fus 45.6 6.5E+02 0.014 30.8 19.9 136 529-692 225-366 (1051)
118 KOG2213 Apoptosis inhibitor 5/ 44.2 4.7E+02 0.01 28.7 20.7 181 492-692 41-228 (460)
119 PF13251 DUF4042: Domain of un 43.7 3.2E+02 0.007 26.7 12.7 108 528-646 50-175 (182)
120 COG5064 SRP1 Karyopherin (impo 43.3 51 0.0011 34.8 5.7 96 451-548 172-274 (526)
121 PF14676 FANCI_S2: FANCI solen 42.1 1.9E+02 0.0041 27.6 9.1 85 846-938 54-141 (158)
122 PF10274 ParcG: Parkin co-regu 39.1 3.8E+02 0.0083 26.2 11.5 81 579-670 54-135 (183)
123 PF08569 Mo25: Mo25-like; Int 38.0 5.3E+02 0.011 28.1 12.8 138 676-824 91-239 (335)
124 COG5656 SXM1 Importin, protein 36.3 8.5E+02 0.018 29.4 54.2 119 488-620 429-553 (970)
125 KOG1943 Beta-tubulin folding c 36.2 9.9E+02 0.021 30.2 29.5 246 475-729 339-613 (1133)
126 PF08064 UME: UME (NUC010) dom 35.6 3.1E+02 0.0067 24.1 11.5 70 635-710 34-104 (107)
127 PF11865 DUF3385: Domain of un 35.4 4E+02 0.0087 25.4 13.6 35 557-596 9-43 (160)
128 PF10441 Urb2: Urb2/Npa2 famil 35.2 4.9E+02 0.011 26.4 16.5 71 534-608 112-201 (223)
129 PF09184 PPP4R2: PPP4R2; Inte 35.1 3E+02 0.0065 29.3 10.1 105 5-112 3-110 (288)
130 KOG0368 Acetyl-CoA carboxylase 34.5 1.2E+03 0.027 30.7 18.1 165 765-946 839-1012(2196)
131 KOG1058 Vesicle coat complex C 33.9 9.2E+02 0.02 29.1 28.3 69 488-565 112-181 (948)
132 COG5240 SEC21 Vesicle coat com 33.3 8.3E+02 0.018 28.4 15.3 60 4-65 301-365 (898)
133 KOG0889 Histone acetyltransfer 31.3 9.5E+02 0.021 34.8 15.6 169 549-733 624-797 (3550)
134 KOG4224 Armadillo repeat prote 30.9 7.3E+02 0.016 27.0 12.1 45 6-50 251-304 (550)
135 KOG2160 Armadillo/beta-catenin 30.7 5.4E+02 0.012 27.9 11.0 95 17-117 94-199 (342)
136 PF08161 NUC173: NUC173 domain 30.5 5.5E+02 0.012 25.5 14.8 56 541-601 24-79 (198)
137 KOG4224 Armadillo repeat prote 30.1 1.4E+02 0.003 32.2 6.4 125 475-613 210-341 (550)
138 PF14668 RICTOR_V: Rapamycin-i 29.6 76 0.0016 25.7 3.6 52 452-504 3-58 (73)
139 COG5234 CIN1 Beta-tubulin fold 28.9 7E+02 0.015 29.7 12.0 240 556-824 244-492 (993)
140 PF10521 DUF2454: Protein of u 28.7 7.2E+02 0.016 26.3 12.2 151 508-671 109-277 (282)
141 KOG4653 Uncharacterized conser 27.1 1.3E+03 0.027 28.6 19.0 121 462-595 794-921 (982)
142 KOG1078 Vesicle coat complex C 26.5 5.9E+02 0.013 30.8 11.1 134 403-555 403-541 (865)
143 KOG1060 Vesicle coat complex A 26.4 1.2E+03 0.027 28.3 20.0 270 488-823 300-570 (968)
144 KOG3723 PH domain protein Melt 25.8 4E+02 0.0086 30.6 9.2 67 456-531 182-249 (851)
145 KOG0414 Chromosome condensatio 25.6 8.6E+02 0.019 31.0 12.7 87 515-619 916-1008(1251)
146 PF14500 MMS19_N: Dos2-interac 24.9 8.1E+02 0.018 25.6 22.2 232 447-708 10-256 (262)
147 cd08050 TAF6 TATA Binding Prot 24.3 9.6E+02 0.021 26.2 12.3 93 472-568 209-319 (343)
148 PF08623 TIP120: TATA-binding 23.8 6.7E+02 0.014 24.2 10.7 58 762-824 38-95 (169)
149 cd00864 PI3Ka Phosphoinositide 23.6 5.5E+02 0.012 24.2 8.9 74 7-91 41-114 (152)
150 KOG2259 Uncharacterized conser 22.9 6.8E+02 0.015 29.7 10.5 143 402-563 383-528 (823)
151 KOG2160 Armadillo/beta-catenin 22.6 1E+03 0.022 25.9 16.5 137 447-597 94-245 (342)
152 PF00514 Arm: Armadillo/beta-c 22.4 1.4E+02 0.0029 20.7 3.5 25 522-546 16-41 (41)
153 KOG0414 Chromosome condensatio 22.2 5.3E+02 0.012 32.7 10.2 112 423-545 911-1026(1251)
154 PF12719 Cnd3: Nuclear condens 21.6 9.9E+02 0.021 25.4 16.3 16 766-781 60-75 (298)
155 KOG2956 CLIP-associating prote 21.5 1.2E+03 0.026 26.4 16.6 60 673-732 418-481 (516)
156 PF10363 DUF2435: Protein of u 21.5 5.1E+02 0.011 22.0 7.9 84 38-134 3-86 (92)
157 COG5096 Vesicle coat complex, 20.0 1.4E+03 0.03 28.0 13.0 179 414-618 59-262 (757)
No 1
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-95 Score=795.36 Aligned_cols=896 Identities=20% Similarity=0.318 Sum_probs=753.3
Q ss_pred Cch--HHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcChhhHHHHHHHhccCCCChhHHHHHHHHHHhhhhcCCCCCChh
Q 002148 1 MEL--QNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSE 78 (959)
Q Consensus 1 ~~~--~~~v~~av~~l~~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~~~faa~~L~~ki~~~w~~l~~~ 78 (959)
|+. ++.|++++..+|++++++.+..+++||++.|+|+.+|++.++|++. ++..++|||||.||+.||+++|++++++
T Consensus 1 md~~~Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~-~k~~evqyFGAltL~~ki~~~~e~~~~~ 79 (982)
T KOG2022|consen 1 MDSDLIATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQP-DKSSEVQYFGALTLHDKINTRWEECPAN 79 (982)
T ss_pred CCchHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCC-CchhHHHHHhHHHHHHHHHhhhccCChh
Confidence 445 8999999999999999999999999999999999999999999985 7888999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCC--CC-----CchhhHHHHhccc
Q 002148 79 AVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNS--HP-----EFVPGFLELLTVL 151 (959)
Q Consensus 79 ~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~l~~--~~-----~~~~~~L~~L~~l 151 (959)
++..|+..++..+..++.||+.|.||+|.++|.+.+++.++.||+ .+.+++..+.. +| ..+..+|+.|+.+
T Consensus 80 ~~~qL~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~d~Wp~--ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls~~ 157 (982)
T KOG2022|consen 80 EAVQLKLKLFLILSRFAGGPKLVLNKLCASLASLILYMVPDLWPT--AIQDVIPTLQGQASPLVLADINCEILLEVLSFM 157 (982)
T ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHccccCCc--hHHHHHHHHhcccCccccchhhHHHHHHHhccC
Confidence 999999999999999998999999999999999999999999999 88999888765 33 2478999999999
Q ss_pred ccccccccccCChhHHHHHHHHHHHhHHHHHHHHHHhhhhh----------HhHHHHHHHHHHHHhccCCCCCcccccch
Q 002148 152 PEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN----------ELKEQVLEAFASWLRLKHRIPGSVLASHP 221 (959)
Q Consensus 152 ~EE~~~~~~~l~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~----------~~~~~~l~~~~sWi~~~~~~~~~~~~~~~ 221 (959)
|+|..+.++ +..+|..++.++......+..++..++... -....+++|+.+|+.+. +.+ ......
T Consensus 158 p~e~q~~~l--~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i-~~~--~~~c~~ 232 (982)
T KOG2022|consen 158 PAEFQHVTL--PLTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYI-SLT--GMDCDQ 232 (982)
T ss_pred cHhhhhccc--hhHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHh-ccc--cccHHH
Confidence 999987654 456788999999999999999888887753 24678999999999963 233 234445
Q ss_pred hHHHHHhcCC--CCchHHHHHHH---------------HHHHHhhhc-cCCCCCCCCchhHHHHHHHHHHh----hHHHh
Q 002148 222 LVLTALSSLH--SEILSEASVNV---------------ISELIHYSA-AGSSGGATVNMPLIQVIVPQIMS----LKAHL 279 (959)
Q Consensus 222 ll~~~~~~L~--~~~~~~~a~~~---------------l~~ii~~~~-~~~~~~~~~~~~~~~~l~~~v~~----l~~~l 279 (959)
+++.++..++ .+...+++-+| ....+..+. ..++ .....+..++.++.+ ..+..
T Consensus 233 i~~~ll~~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~----nti~~li~i~~~~l~e~~~~~~~~ 308 (982)
T KOG2022|consen 233 ITQVLLDVLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYR----NTITLLISICLGILQEVSGKIQEE 308 (982)
T ss_pred HHHHHHHHHhhhccccccchhhhcccchhhhccchHHHHHHHhcChHHHhcc----chHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666665554 11112222111 111111111 0000 112223333333221 11223
Q ss_pred hhcCCCHHHHHHHHHHHHHhhhHHHHHHhcCC------chHHHHHHHHHhhccCC-----CcchhhhhHHhHHHhHHHHh
Q 002148 280 TDSSKDEEDVKAIARLFADMGDSYVELIATGS------DESMLIVHALLEVASHP-----EYDIASMTFNFWHSLQVILT 348 (959)
Q Consensus 280 ~~~~~d~e~~~~l~~l~~~~~~~~~~~l~~~~------~~~~~~l~~ll~~~~~~-----~~~v~~~~l~fW~~l~~~~~ 348 (959)
.+++..+|....+++++++.+|++.+.+.++. +.+.++++.++.|++.| ++.+|..++.||+.|.+++.
T Consensus 309 e~~d~~~e~i~~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~ypveE~~S~~~l~FW~tL~dei~ 388 (982)
T KOG2022|consen 309 ENADASEEEIVTFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQYPVEEIVSDRTLIFWYTLQDEIM 388 (982)
T ss_pred hCCCchhHHHHHHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCCccHHHHHhHHHHHHHHHHHHHHH
Confidence 33343467778999999999999988776432 24779999999999988 46789999999999999875
Q ss_pred hcccccccCcccchHHHHHHHHhhhH-HHHHHHHHHHHhhccCCCC--CCCCChhhhHHHHHHHHHhhHHHHHhhhccCh
Q 002148 349 KRDSYISFGNEASAEAERSRRLQVFR-SAYESLVSLVSFRVQYPQD--YQDLSLEDLKEFKHTRYAVADVLIDAASVLGG 425 (959)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Ll~~l~~k~~~p~d--~~~~~~d~~~~f~~~R~~~~d~l~~~~~il~~ 425 (959)
... ++.. ..+...|+ |+|.+|+++++.|+.+|.+ +..|+.|++|.|++||++++|+++++|.++|
T Consensus 389 ~~~------~e~~-----~~~~~i~~~qIy~qlvei~l~K~~~Ps~e~~~~W~S~s~e~F~~YR~diSD~~~~~Y~ilg- 456 (982)
T KOG2022|consen 389 QTI------NETQ-----QIKKQILSQQIYAQLVEILLKKLALPSKEIWLSWSSDSREQFESYRKDISDLLMSSYSILG- 456 (982)
T ss_pred Hhh------hccC-----CcchhHHHHHHHHHHHHHHHHHhcCCCHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 321 1111 11233455 9999999999999999974 6679999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHhhcccCCccccchHHHhhhccCCC---CcHHHHHHHHHHHHhh
Q 002148 426 DATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLP---QQPQLLQTVCLTIGAY 502 (959)
Q Consensus 426 ~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~l~e~~~~~~~~~l~~l~~~l~~lp---~~~~v~~t~~~~ig~y 502 (959)
+.++..+++.+.++...+..++.+|...|+|+|++.++++.+..++++.++.+|+...+.+ .+|.+..|+..+||.|
T Consensus 457 d~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~ 536 (982)
T KOG2022|consen 457 DGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSL 536 (982)
T ss_pred HHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHHHHHHHHHHHH
Confidence 7899999999999876554346789999999999999999999999999999999987654 2899999999999999
Q ss_pred hhHHhhCCCChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHH
Q 002148 503 SKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLH 582 (959)
Q Consensus 503 ~~~l~~~p~~~~~l~~~l~~l~~~l~~~~~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~ 582 (959)
+.|++.||. ++++.++.+++|+++++ ....|...+.+||++|+.+|.||.++|+..+..+++.. ...+.++.+
T Consensus 537 s~~l~e~P~---~ln~sl~~L~~~Lh~sk-~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~---~~~~S~~~k 609 (982)
T KOG2022|consen 537 SNWLGEHPM---YLNPSLPLLFQGLHNSK-ESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKS---NAKDSDRLK 609 (982)
T ss_pred HHHHhcCCc---ccCchHHHHHHHhcCch-HHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhccc---ccCchHHHH
Confidence 999999997 89999999999999888 78888888999999999999999999999999998863 578899999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCCc------------
Q 002148 583 LVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHP------------ 650 (959)
Q Consensus 583 l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~------------ 650 (959)
+|.+||++++.+.+|++.+|+.++++|+++.++.++......+ .....++..+.+++++|.++..+
T Consensus 610 lm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~--e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~ 687 (982)
T KOG2022|consen 610 LMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQ--ENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQR 687 (982)
T ss_pred HHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCH--HHHHHHHHHHHHHHHHHhccCCCCccccccchhhh
Confidence 9999999999999999999999999999999999876544322 22334566789999999998632
Q ss_pred ------ccHHHHHHHHhHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHHhhcCCcchhHhH
Q 002148 651 ------EAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFM-GITIGAILEEIQGLYQQHQQPCFLYLS 723 (959)
Q Consensus 651 ------~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~~~~~~~~~-~~~l~~l~~~l~~~~~~~~~~~~L~l~ 723 (959)
.|++.+.++++|+++.++..|-++.+++|++|.+..++++..++.+ .|++|+++.++++ |.+.+...-+.+.
T Consensus 688 ~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r-~~~~~~a~tl~l~ 766 (982)
T KOG2022|consen 688 EEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVR-FLTSCLAVTLSLI 766 (982)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHH-hccchHHHHHHHH
Confidence 2678899999999999999999999999999999999999877766 7999999999998 9888888889999
Q ss_pred HHHHHHhCCCccchHHHHHHHHHHHHHHHHhhcCcccCCCCCCcHHHHHHHHHHHHhhCCCcccC-cCChHHHHH-HHHH
Q 002148 724 SEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIP-SSVFPSLVD-CSMI 801 (959)
Q Consensus 724 ~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pDl~~~~f~l~~~~~~~~p~~~l~-s~~l~~~~~-~~~~ 801 (959)
.+++..+..++.+.+.+...+...++.++.++++. .+.++||+...++.++..++++.|+.+.+ ...+.+++. |++.
T Consensus 767 ~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~-~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~ts~i~~~a~~ 845 (982)
T KOG2022|consen 767 AACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQH-PFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFTSLILICAFI 845 (982)
T ss_pred HHHHHhhhccccccccHHHHHHHHHHHHHHHHhcc-CCCCCchHHHHHHHHHHHHHHhCcCccccchHHHHHHHHHHHHH
Confidence 99999999888899999998988889988888853 37899999999999999999999998887 445777765 9999
Q ss_pred hccCCCchhHHHHHHHHHHhhcCcCCCCchhhHHHHHHHHhhccHHHHHHHHHHcccCCCCCCcccHHHHHHHHHHHhhH
Q 002148 802 GITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETVTYALLALTRAYGV 881 (959)
Q Consensus 802 ~l~~~~~~~~~~~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~l~~~~~~~~~~~~a~il~~l~~~~~~ 881 (959)
.+..+++.+.+++++||+.+++.+++.+ ...+.+++.+.|+.++.+++.+++|..+|+.++.+||+|+++.++|+.
T Consensus 846 ll~~pE~~~i~aa~qF~t~~~~~~~s~~----~~tv~~~V~~~G~~Li~~im~~vgg~~~RS~ld~~aDIL~al~~k~~s 921 (982)
T KOG2022|consen 846 LLNSPEPTTIRAASQFLTALATYATSHD----LVTVTSVVAEIGPILIYAIMRGVGGEASRSTLDALADILLALNAKFFS 921 (982)
T ss_pred hcCCCccHHHHHHHHHHHHHHhhcccch----hHHHHHHHHhcchHHHHHHHHHhcCcCccchhHHHHHHHHHHHHhhhH
Confidence 9999999999999999999987765422 345889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH--hhCCCCCCCHHHHHHHHHHHHHHhcCCCchhhhHHHHHHHHHHHhh
Q 002148 882 RSLEWAKESV--SLIPLTALAEVERSRFLQALSEAASGVDVNAAMAPVEELSDVCRRN 937 (959)
Q Consensus 882 ~~~~wl~~~l--~~~p~~~~~~~~~~~f~~~l~~~~~~~~~~~f~~~l~~F~~~~r~~ 937 (959)
+++.|+.+++ ++||+.++++++|++|++.|++++ .++|.+++.+.+|+.-||+.
T Consensus 922 e~r~wl~~~lq~~gfPs~~~s~e~k~rf~t~llrer--~n~R~~k~~il~~~L~~~~l 977 (982)
T KOG2022|consen 922 ETRTWLKAVLQIPGFPSAGVSNEIKSRFVTSLLRER--GNKRNFKQQILEFNLACTGL 977 (982)
T ss_pred HHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHH--hcHHHHHHHHHHHHHHhcCC
Confidence 9999999999 489999999999999999999987 57899999999999999985
No 2
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.4e-73 Score=606.83 Aligned_cols=880 Identities=14% Similarity=0.167 Sum_probs=671.9
Q ss_pred HHHHHHHHHHHccC-CCHHHHHHHHHHHHHHhcChhhHHHHHHHhccCCCChhHHHHHHHHHHhhhhcCCCCCChhhHHH
Q 002148 4 QNTVKEALNALYHH-PDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRG 82 (959)
Q Consensus 4 ~~~v~~av~~l~~~-~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~~~faa~~L~~ki~~~w~~l~~~~~~~ 82 (959)
.++|+|||.++..| .|+..|+||.+|+++++.||+||++|.+++....+++.+||||.|||.++++..+++.+..+++.
T Consensus 2 mddiEqav~a~ndp~vdsa~KqqA~~y~~qiKsSp~aw~Icie~l~~~ts~d~vkf~clqtL~e~vrekyne~nl~elql 81 (980)
T KOG2021|consen 2 MDDIEQAVNAVNDPRVDSATKQQAIEYLNQIKSSPNAWEICIELLINETSNDLVKFYCLQTLIELVREKYNEANLNELQL 81 (980)
T ss_pred chHHHHHHHhhCCCcccHHHHHHHHHHHHhhcCCccHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHhhccCCHHHHHH
Confidence 47899999999877 79999999999999999999999999999987568889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc------CCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCCC--chhhHHHHhcccccc
Q 002148 83 LQDSLNTLLKKFH------KGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPE--FVPGFLELLTVLPEE 154 (959)
Q Consensus 83 lr~~Ll~~l~~~~------~~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~l~~~~~--~~~~~L~~L~~l~EE 154 (959)
+|..+..|+.... .+|.+|+||+++.++.++..+||+.|++ |+.|+...+.-++. +.+.++++|..+..|
T Consensus 82 vR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~Wns--fF~dlmsv~~~~s~~~~~dfflkvllaIdsE 159 (980)
T KOG2021|consen 82 VRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWNS--FFDDLMSVFQVDSAISGLDFFLKVLLAIDSE 159 (980)
T ss_pred HHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhHH--HHHHHHHHHhcccchhhHHHHHHHHHHhhhH
Confidence 9999999998632 3589999999999999999999999998 99999988876654 489999999999999
Q ss_pred cccccccCChh---HHHHHHHHHH-HhHHHHHH----HHHHhhhh--hHhHHHHHHHHHHHHhccCCCCCcccccchhHH
Q 002148 155 VFNYKIAARPE---RRRQFEKELT-SQMEVALS----TLTACLHI--NELKEQVLEAFASWLRLKHRIPGSVLASHPLVL 224 (959)
Q Consensus 155 ~~~~~~~l~~~---~r~~l~~~l~-~~~~~vl~----~l~~~l~~--~~~~~~~l~~~~sWi~~~~~~~~~~~~~~~ll~ 224 (959)
+.+.+...+++ +.+.+|+.|+ ++++.+.+ ++...-+. +++...+|+|+++|+.| +..+.+.+.++++
T Consensus 160 iad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSW---IdInLIaNd~f~n 236 (980)
T KOG2021|consen 160 IADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSW---IDINLIANDYFLN 236 (980)
T ss_pred hhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhh---hhhhhhhchhHHH
Confidence 99887654432 2246788885 44565554 44433222 57888999999988887 5556678999999
Q ss_pred HHHhcCCCCchHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHH--HHHhhHHHhhhcCCCHHHHHHHHHHHHHhhhH
Q 002148 225 TALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVP--QIMSLKAHLTDSSKDEEDVKAIARLFADMGDS 302 (959)
Q Consensus 225 ~~~~~L~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~--~v~~l~~~l~~~~~d~e~~~~l~~l~~~~~~~ 302 (959)
+++.+++.++++.+||+|+.++++++|++. +++++++.+.. ++....+ ....+|.|+.+.++++++++|..
T Consensus 237 LLy~fl~ieelR~aac~cilaiVsKkMkP~-----dKL~lln~L~q~l~lfg~~s--~dq~~d~df~e~vskLitg~gve 309 (980)
T KOG2021|consen 237 LLYKFLNIEELRIAACNCILAIVSKKMKPM-----DKLALLNMLNQTLELFGYHS--ADQMDDLDFWESVSKLITGFGVE 309 (980)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhcCCChh-----HHHHHHHHHHHHHHHHhhhc--cccccCchHHHHHHHHHhhccee
Confidence 999999999999999999999999999654 57777776532 1211111 12346778889999999999998
Q ss_pred HHHHHhc----CC--------chHHHHHHHHHhhccCCCcchhhhhHHhHHHhHHHHhhcccccccCcccchHHHHHHHH
Q 002148 303 YVELIAT----GS--------DESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRL 370 (959)
Q Consensus 303 ~~~~l~~----~~--------~~~~~~l~~ll~~~~~~~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (959)
....+.+ .+ ....+.+.+++++..|.+++++..+++||+.+...+++. .++ .
T Consensus 310 l~~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ifpFlsdyl~~LKkl---~~l-------------s 373 (980)
T KOG2021|consen 310 LTIIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIFPFLSDYLAFLKKL---KAL-------------S 373 (980)
T ss_pred eehhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHhhc---ccc-------------c
Confidence 7654432 11 124578899999999999999999999999999888642 211 1
Q ss_pred hhhHHHHHHHHHHHHhhccCCCCCC---C-CChhhhHHHHHHHHHhhHHHHHhhhccChHHHHHHHHHHHHHhhhhcCCC
Q 002148 371 QVFRSAYESLVSLVSFRVQYPQDYQ---D-LSLEDLKEFKHTRYAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNK 446 (959)
Q Consensus 371 ~~~~~~~~~Ll~~l~~k~~~p~d~~---~-~~~d~~~~f~~~R~~~~d~l~~~~~il~~~~~l~~l~~~l~~~~~~~~~~ 446 (959)
+.-+-.+.+++.++++|+.|++.+. + -++||++.|.+||+++.. +.+....+.|+.++..+.+.+..++.++.
T Consensus 374 ~~qk~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~RkkLk~-fqdti~~idpsl~l~~Ir~slS~al~ns~-- 450 (980)
T KOG2021|consen 374 SPQKVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKKLKN-FQDTIVVIDPSLFLNNIRQSLSAALMNSK-- 450 (980)
T ss_pred chhhccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHHHHH-HHHHHHhcCHHHHHHHHHHHHHHHHhcCC--
Confidence 1223456778889999999998532 2 234677889999999975 55556666778888888888888776554
Q ss_pred CCCcchhhHHHHHHHHhhcccCCcc----c------cchHHHhhhcc--CCC--CcHHHHHHHHHHHHhhhhHHhhCCCC
Q 002148 447 HNEWRPAEAALFCIRAISTYVSVVE----A------EVMPQVMALLP--KLP--QQPQLLQTVCLTIGAYSKWFDAASSD 512 (959)
Q Consensus 447 ~~~w~~~Ea~l~~l~~l~e~~~~~~----~------~~l~~l~~~l~--~lp--~~~~v~~t~~~~ig~y~~~l~~~p~~ 512 (959)
..+|+.+|+++|.++.+||+.+.+. + ..+..++.++. +++ +|+.|..-++++|.||..||..+++
T Consensus 451 e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~esq- 529 (980)
T KOG2021|consen 451 EESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTESQ- 529 (980)
T ss_pred cchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhcchh-
Confidence 5789999999999999999998752 1 22334444442 344 4899999999999999999999987
Q ss_pred hhhHHHHHHHHH--hccCCCH-HHHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHhhcc-------CCCCCCHhhHHH
Q 002148 513 PSILASVLSILT--SGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGE-------GSLKVSAEDSLH 582 (959)
Q Consensus 513 ~~~l~~~l~~l~--~~l~~~~-~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~~~~~-------~~~~l~~~~~~~ 582 (959)
.+|-++++++ +|+++.+ .|+.+|+|.|.++++..++++.||++.+++.+++++..+ .+...+.+++++
T Consensus 530 --~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~fddqly 607 (980)
T KOG2021|consen 530 --KIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQLY 607 (980)
T ss_pred --hhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCcCccccccccccccce
Confidence 8999999997 6888764 599999999999999999999999999999999998421 123346889999
Q ss_pred HHHHHHHHHhc--CChHHHHHHHHHhhhhhHHHHHHHHhcCC-CcccccC--chhhhHHHHHHHHHhhhcCC---c--c-
Q 002148 583 LVEALSMVITE--LPQVDAKKALEMLCLPVVTPLQEIINQGP-EILQKKH--PRDLTVHIDRFAYIFRYVNH---P--E- 651 (959)
Q Consensus 583 l~eai~~vi~~--~p~~~~~~~l~~ll~p~~~~l~~~~~~~~-~~~~~~~--~~~~~~~l~~l~~~~~~~~~---~--~- 651 (959)
++|++|.+|.. .|+|+...+...++.|++.+......+.. ++..+.. ......++..|+++.++... + +
T Consensus 608 IfEtiGviI~l~n~paE~qaay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qv 687 (980)
T KOG2021|consen 608 IFETIGVIITLNNSPAELQAAYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQV 687 (980)
T ss_pred eeecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccccCcchhcc
Confidence 99999999874 78888889999999999887654443322 1111111 11233456777777777642 1 1
Q ss_pred cHHHHHHHHhHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCCcchhHhHHHHHHHhC
Q 002148 652 AVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFG 731 (959)
Q Consensus 652 ~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~~~ 731 (959)
.+..++.++..++..++..++..+.++.+++..++|++.++|+.+.|++|.+++.++.+-...+...|+.++++++++|+
T Consensus 688 g~~~vf~~~ldvil~~ls~f~k~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~s~d~kEmvdfl~flsQLihkfk 767 (980)
T KOG2021|consen 688 GNMVVFSNILDVILVTLSFFNKFENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLSSTDLKEMVDFLGFLSQLIHKFK 767 (980)
T ss_pred cHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 23445677777777777888888899999999999999999999999999999999988888888999999999999999
Q ss_pred CCccchHHHHHHHHHHHHHHHHhhcCcccCCCC-------CCcHHHHHHHHHHHHhhCCCcccCcC----ChHHHHHHHH
Q 002148 732 SDPSCASYLHNLIEALFKRTTCLLTSIEEFTSR-------PDVADDCFLLASRCIRYCPQLFIPSS----VFPSLVDCSM 800 (959)
Q Consensus 732 ~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~-------pDl~~~~f~l~~~~~~~~p~~~l~s~----~l~~~~~~~~ 800 (959)
.+ +.+.+.+++.+++.+++..+.... ...+ -+++++|++|+.++..+..+.++.++ .++.++...+
T Consensus 768 ~~--~~~ilnqmlppll~rIfsvi~r~a-~p~dt~aa~ek~~lrksy~~fLqtftn~g~~silat~~n~~~~~~iln~l~ 844 (980)
T KOG2021|consen 768 TD--CYQILNQMLPPLLNRIFSVIERIA-KPIDTAAAAEKILLRKSYCTFLQTFTNNGVTSILATDINRAILPVILNDLV 844 (980)
T ss_pred HH--HHHHHHHHHHHHHHHHHHHhcccC-CCCChhHHHHHHHHHHHHHHHHHHHhcCCcceeeeccchhhhhhHHHHHhh
Confidence 76 999999999999999999886421 1222 23788999999999988766555432 3444444443
Q ss_pred H-hccCCCchhHHHHHHHHHHhhc-CcCCCCchhhHHHHHHHHhhccHHHHHHHHHHcc---cCC----CCCCcccHHHH
Q 002148 801 I-GITVQHREASNSILTFLSDIFD-LAKSCKGEEFLSVRDSVIIPRGASITRILIASLT---GAL----PSSRLETVTYA 871 (959)
Q Consensus 801 ~-~l~~~~~~~~~~~~~fl~~li~-~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~l~---~~~----~~~~~~~~a~i 871 (959)
. +-...++-+.++.......+.. |++.+...+|.+.+- ...|.. .|+.... ++. ...++.++|.+
T Consensus 845 ~~a~~y~dpmmQksln~lcnk~v~lwggkdg~~gf~dfvl---k~~~ln---~Cf~~pl~~~Fn~~Dgnt~~~lgEla~l 918 (980)
T KOG2021|consen 845 TYAPQYIDPMMQKSLNVLCNKIVCLWGGKDGDNGFKDFVL---KIDGLN---KCFPIPLEIPFNIKDGNTKTMLGELARL 918 (980)
T ss_pred hccccccCHHHHHHHHHHHHHHHHhcCCcCCcccccccee---eccccc---ceeeecccCCcccccchHHHHHHHHHHH
Confidence 3 2335667666666655555554 433222223322111 111111 1222211 111 11345678889
Q ss_pred HHHHHHHhhHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCCchhhhH-HHHHHHH
Q 002148 872 LLALTRAYGVRSLEWAKESVSLIPLTALAEVERSRFLQALSEAASGVDVNAAMA-PVEELSD 932 (959)
Q Consensus 872 l~~l~~~~~~~~~~wl~~~l~~~p~~~~~~~~~~~f~~~l~~~~~~~~~~~f~~-~l~~F~~ 932 (959)
++.+..+.|+++..||.+. .||+-+++++..++|++++.+ -+.+.|++ .++.|..
T Consensus 919 lK~i~ek~gnecv~yL~q~--ylPs~q~pqela~qycqaLq~----~d~k~Fk~~f~~~fis 974 (980)
T KOG2021|consen 919 LKEIFEKSGNECVKYLTQI--YLPSIQLPQELAIQYCQALQT----MDQKQFKKWFVDNFIS 974 (980)
T ss_pred HHHHHHHhchHHHHHHHHH--hcccccCCHHHHHHHHHHHhc----cchhHHHHHHHHHHHH
Confidence 9999999999999999985 699999999999999999965 46788988 7777764
No 3
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.4e-66 Score=546.91 Aligned_cols=548 Identities=36% Similarity=0.596 Sum_probs=482.7
Q ss_pred HHHHHHHHHHhcChhhHHHHHHHhccCCCChhHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHHHHHHHHhcCCChHHHH
Q 002148 24 MQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRT 103 (959)
Q Consensus 24 ~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~~~faa~~L~~ki~~~w~~l~~~~~~~lr~~Ll~~l~~~~~~~~~v~~ 103 (959)
.+|++||.+||+|+++|++|.++|+. ..+.+..+|||||+++||+++++++|+.+..++|++++.++......+..+++
T Consensus 2 ~~A~~~L~~FQ~S~~aW~i~~eiL~~-~~~~~~~~FaaqTlr~Ki~~~F~~Lp~~~~~slrdsl~thl~~l~~~~~~i~t 80 (559)
T KOG2081|consen 2 EKANNWLGNFQKSNDAWQICEEILSQ-KCDVEALLFAAQTLRNKIQYDFSELPPLTHASLRDSLITHLKELHDHPDVIRT 80 (559)
T ss_pred chHhHHHHHhCCChHHHHHHHHHHcc-cchHHHHHHHHHHHHHHHHhhHHhcCcchhHHHHHHHHHHHHHHHhCCchHHH
Confidence 47999999999999999999999987 47889999999999999999999999999999999999999997766679999
Q ss_pred HHHHHHHHHHhhccccccCCccchHHHHHhcCCCCCchhhHHHHhcccccccccccccCChhHHHHHHHHHHHhHHHHHH
Q 002148 104 QISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALS 183 (959)
Q Consensus 104 kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~l~~~~~~~~~~L~~L~~l~EE~~~~~~~l~~~~r~~l~~~l~~~~~~vl~ 183 (959)
||+.++|+++++++ +|.+ .+.++++..++.+...+++|++|+++|||+.+.+.+....||+++.+.+..+++.++.
T Consensus 81 QL~vavA~Lal~~~--~W~n--~I~e~v~~~~~~~~~~~~lLeiL~VlPEE~~~~~~~~~a~Rr~e~~~~l~~~~~~~L~ 156 (559)
T KOG2081|consen 81 QLAVAVAALALHMP--EWVN--PIFELVRALSNKHPAVPILLEILKVLPEETRDIRLTVGANRRHEFIDELAAQVSKVLV 156 (559)
T ss_pred HHHHHHHHHHHHhH--hhcc--hHHHHHHHhhcCCccHHHHHHHHHhCcHhhcchhhhhhhhhHHHHHHHHHHhHHHHHH
Confidence 99999999999997 6998 8999998888776668899999999999999988878889999999999999999999
Q ss_pred HHHHhhhhh-----HhHHHHHHHHHHHHhccCCCCCcccccc-hhHHHHHhcCCCCchHHHHHHHHHHHHhhhccCCCCC
Q 002148 184 TLTACLHIN-----ELKEQVLEAFASWLRLKHRIPGSVLASH-PLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGG 257 (959)
Q Consensus 184 ~l~~~l~~~-----~~~~~~l~~~~sWi~~~~~~~~~~~~~~-~ll~~~~~~L~~~~~~~~a~~~l~~ii~~~~~~~~~~ 257 (959)
++..+++.+ +...++++|+.||..+. .+|.+.+.+. +++..+|..++++++++.|++|++.+++......
T Consensus 157 ~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~-~~~~d~v~a~~pLi~l~F~sl~~~~lhe~At~cic~ll~~~~~~~--- 232 (559)
T KOG2081|consen 157 FLSDLLERSDLKSSDDLEQVLRCLGSWLRLH-VFPPDQVLASFPLITLAFRSLSDDELHEEATECICALLYCSLDRS--- 232 (559)
T ss_pred HHHHHHhhcCCChhhHHHHHHHHHhhhhhhc-cCCHHHHHhhhHHHHHHHHHcccchhhHHHHHHHHHHHHHhhhhh---
Confidence 999998874 46799999999999986 5888877555 9999999999999999999999999998765322
Q ss_pred CCCchhHHHHHH--HHHHhhHHHhhhcCCCHHHHHHHHHHHHHhhhHHHHHHhcCCchHHHHHHHHHhhccCCCcchhhh
Q 002148 258 ATVNMPLIQVIV--PQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASM 335 (959)
Q Consensus 258 ~~~~~~~~~~l~--~~v~~l~~~l~~~~~d~e~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~l~~ll~~~~~~~~~v~~~ 335 (959)
+..++-..++ +.++...-....+.+|.|...++||+|+++|++|...+.++++.+..+++.+|.+++|++.+|.+.
T Consensus 233 --~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~h~~~evie~ 310 (559)
T KOG2081|consen 233 --EGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAGHNDTEVIEA 310 (559)
T ss_pred --ccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhccCCchhhhhh
Confidence 1111222222 222333333455678888889999999999999999999999999999999999999999999999
Q ss_pred hHHhHHHhHHHHhhcccccccCcccchHHHHHHHHhhhHHHHHHHHHHHHhhccCCCCCCCCChhhhHHHHHHHHHhhHH
Q 002148 336 TFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYAVADV 415 (959)
Q Consensus 336 ~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~d~ 415 (959)
+|.||+++.+.+++..+ ......|+|++.++++.+.+|++||+|. +...||.++|.+||..++|+
T Consensus 311 SF~fW~~lse~l~~~~~--------------~~~~~~frpy~~rLvs~l~~h~qlp~~~-~~l~Ee~~~f~~fR~~v~dv 375 (559)
T KOG2081|consen 311 SFNFWYSLSEELTLTDD--------------DEALGIFRPYFLRLVSLLKRHVQLPPDQ-FDLPEEESEFFEFRLKVGDV 375 (559)
T ss_pred hHHhhhhhHHHHhcccc--------------HHHHHHhHHHHHHHHHHHHHHccCCCcc-ccCccchhHHHHHHHHHHHH
Confidence 99999999999987532 1345689999999999999999999943 33467778999999999999
Q ss_pred HHHhhhccChHHHHHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHhhcccCCccccchHHHhhhccCCCCcHHHHHHH
Q 002148 416 LIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTV 495 (959)
Q Consensus 416 l~~~~~il~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~l~e~~~~~~~~~l~~l~~~l~~lp~~~~v~~t~ 495 (959)
++|+..++|.+.+++.++..+.+. ..+|+.+||+||.+.+++..+++++++.+|++++.++++|....+|+|+
T Consensus 376 l~Dv~~iigs~e~lk~~~~~l~e~-------~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nlp~Q~~~~~ts 448 (559)
T KOG2081|consen 376 LKDVAFIIGSDECLKQMYIRLKEN-------NASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICNLPEQAPLRYTS 448 (559)
T ss_pred HHHHHHHhCcHHHHHHHHHHHccC-------CCchHHHHHHHHHHHHHhccCCccccchHHHHHHHHhCCccchhHHHHH
Confidence 999999999999999999988862 6889999999999999999999999999999999999999877799999
Q ss_pred HHHHHhhhhHHhhCCCChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHhhccCCCCC
Q 002148 496 CLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKV 575 (959)
Q Consensus 496 ~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~~~~~~~~~l 575 (959)
+.++|+|++|+..||+ ++..+++++..++.... .+.+|+.+++++|..|+.++.+.++.+......+... ..
T Consensus 449 ~ll~g~~~ew~~~~p~---~le~v~~~~~~~~~~~~-~as~~a~~~~~i~~~c~~~~~~l~~~~~~l~~~l~~~----~~ 520 (559)
T KOG2081|consen 449 ILLLGEYSEWVEQHPE---LLEPVLRYIRQGLQLKR-LASAAALAFHRICSACRVQMTCLIPSLLELIRSLDST----QI 520 (559)
T ss_pred HHHHHHHHHHHHhCcH---HHHHHHHHHHHHhhhcc-hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH----hc
Confidence 9999999999999998 99999999999998877 9999999999999999999998888888777666543 24
Q ss_pred CHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHH
Q 002148 576 SAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTP 613 (959)
Q Consensus 576 ~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~ 613 (959)
+.+... +.+|++.+++.+|.++.+..++.++.|.+..
T Consensus 521 ~~e~a~-l~~~~s~i~~~lp~~k~~~~~~el~~~~l~~ 557 (559)
T KOG2081|consen 521 NEEAAC-LLQGISLIISNLPAHKAKIALEELCEPQLRN 557 (559)
T ss_pred cHHHHH-HHHHHHHHHhcCCHhhhhHHHHHHhhHHHhc
Confidence 566677 9999999999999999999999999987754
No 4
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=100.00 E-value=1.2e-55 Score=463.75 Aligned_cols=905 Identities=16% Similarity=0.196 Sum_probs=640.1
Q ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcChhhHHHHHHHhccCCCChhHHHHHHHHHHhhhhcCCCCCChhhHHHH
Q 002148 4 QNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGL 83 (959)
Q Consensus 4 ~~~v~~av~~l~~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~~~faa~~L~~ki~~~w~~l~~~~~~~l 83 (959)
++-+.++|..+|.+.+ ..++||++.|.+||..|+||+-+.++|+. +..++.+|.|.++|...|.++|+-+|++.+.++
T Consensus 13 iallDkVVttfyqg~g-~~q~qAq~iLtkFq~~PdaWtkad~IL~~-S~~pqskyiALs~LdklIttkWkllp~~~r~Gi 90 (1053)
T COG5101 13 IALLDKVVTTFYQGDG-RKQEQAQRILTKFQELPDAWTKADYILNN-SKLPQSKYIALSLLDKLITTKWKLLPEGMRQGI 90 (1053)
T ss_pred HHHHHHHHHHhcCCCc-hhHHHHHHHHHHHHhCchHHHHHHHHHhc-ccCcchhhhHHHHHHHHHHhhhhhCCcHHHHHH
Confidence 3567888999996644 57889999999999999999999999987 788999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC------CChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCCCchhhHHHHhccccccccc
Q 002148 84 QDSLNTLLKKFHK------GPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFN 157 (959)
Q Consensus 84 r~~Ll~~l~~~~~------~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~l~~~~~~~~~~L~~L~~l~EE~~~ 157 (959)
|+++++.+..-++ ..+.+.+|+-.+|..++++.||..||+ |++++++.-+.+-+.|+..+.+|+.|.||+.+
T Consensus 91 Rnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~nWP~--FIpeli~~S~~s~~vCeNnmivLklLsEEvFd 168 (1053)
T COG5101 91 RNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPRNWPT--FIPELINVSQISMEVCENNMIVLKLLSEEVFD 168 (1053)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcccccch--hhHHHHhhccchHHHHhccHHHHHHhHHHHHh
Confidence 9999999887542 357899999999999999999999999 99999987665556788999999999999987
Q ss_pred ccc-cCChhHHHHHHHHHHHhHHHHHHHHHHhhhh---hHhHHHHHHHHHHHHhccCCCCCcccccchhHHHHHhc-CCC
Q 002148 158 YKI-AARPERRRQFEKELTSQMEVALSTLTACLHI---NELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSS-LHS 232 (959)
Q Consensus 158 ~~~-~l~~~~r~~l~~~l~~~~~~vl~~l~~~l~~---~~~~~~~l~~~~sWi~~~~~~~~~~~~~~~ll~~~~~~-L~~ 232 (959)
..- .++..+...+++.|...++++++++.++++. +++..++|+.+..++.| +|.+.+..+.+++++.+. ++.
T Consensus 169 fSaeqmTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~~~~SLi~ATLesllrfl~w---iPl~yIfeTnIieLv~~~f~s~ 245 (1053)
T COG5101 169 FSAEQMTQVKKRLLKNQMKIEFPQIFGLCKQILEYSRDESLIEATLESLLRFLEW---IPLDYIFETNIIELVLEHFNSM 245 (1053)
T ss_pred ccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhh---CchhHHHHHHHHHHHHHHhccC
Confidence 642 2445666678888899999999999998875 35667766666554444 444567778889988755 567
Q ss_pred CchHHHHHHHHHHHHhhhccCCCCCCC-Cchh-HHHHHHHHHH--------hhHHHhhhcCCCH-HHHHHHHHHHHHhhh
Q 002148 233 EILSEASVNVISELIHYSAAGSSGGAT-VNMP-LIQVIVPQIM--------SLKAHLTDSSKDE-EDVKAIARLFADMGD 301 (959)
Q Consensus 233 ~~~~~~a~~~l~~ii~~~~~~~~~~~~-~~~~-~~~~l~~~v~--------~l~~~l~~~~~d~-e~~~~l~~l~~~~~~ 301 (959)
|+.+.++++|+.|+.+.++.+.+++.. +... .++.+...++ .+.+.+...+..+ .+...++.+++++-+
T Consensus 246 pd~r~~tl~CLtEi~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~Fvq~LA~fL~s~~~ 325 (1053)
T COG5101 246 PDTRVATLSCLTEIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIFVQKLAQFLSSLYE 325 (1053)
T ss_pred CchhHHHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHHHHHHHHHHHHHHH
Confidence 899999999999999887654332211 1111 1122211111 1222233334433 578999999999999
Q ss_pred HHHHHHhcCC--chHHHHHHHHHhhccCCCcchhhhhHHhHHHhHHHHhhcccc---cccCc-------------ccchH
Q 002148 302 SYVELIATGS--DESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSY---ISFGN-------------EASAE 363 (959)
Q Consensus 302 ~~~~~l~~~~--~~~~~~l~~ll~~~~~~~~~v~~~~l~fW~~l~~~~~~~~~~---~~~~~-------------~~~~~ 363 (959)
.+..++.... +....-..++++++...++++...++++|..+.-+++..-+- ..++| .|...
T Consensus 326 ~~~~lLE~~e~~e~llnah~YLiqiSrInereiFkt~leyW~klVadLy~E~q~lp~tem~Pli~ls~~s~~istnpn~~ 405 (1053)
T COG5101 326 VYISLLEAREMAENLLNAHGYLIQISRINEREIFKTALEYWNKLVADLYSEFQRLPATEMSPLIQLSVGSQAISTNPNQD 405 (1053)
T ss_pred HHHHHhcChhHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcchhccccchhccCCcchh
Confidence 9998885422 134556788999999999999999999999998887653210 01111 11111
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhccCCCCCCCCChhhhH---------HHHHHHHHhhHHHHHhhhccChHHHHHHHHH
Q 002148 364 AERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLK---------EFKHTRYAVADVLIDAASVLGGDATLKILYI 434 (959)
Q Consensus 364 ~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~d~~~~~~d~~~---------~f~~~R~~~~d~l~~~~~il~~~~~l~~l~~ 434 (959)
....-+...|..++++|.-+++++|..|++.--..+|+-| |--++-+.+++++.+..+..- +++-.++..
T Consensus 406 ~~~pLrkhiY~~ilsqLrlvlienMvrPEEVliVendegEivRefvketDtI~lYksmRevLvyLthL~v-~Dte~~mi~ 484 (1053)
T COG5101 406 STKPLRKHIYIGILSQLRLVLIENMVRPEEVLIVENDEGEIVREFVKETDTIELYKSMREVLVYLTHLIV-DDTEKYMIG 484 (1053)
T ss_pred cccchHHHHHHHHHHHHHHHHHHcCCCcceEEEEECCCcHHHHHHhccccHhHHHHHHhhHHHHHhhhhh-hhHHHHHHH
Confidence 1112244578899999999999999999863111111111 111233456678888776654 446667777
Q ss_pred HHHHhhhhcCCCCCCcchhhHHHHHHHHhhcccCCcc-ccchHHHhhhccCC------CC-cHHHHHHHHHHHHhhhhHH
Q 002148 435 KFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVE-AEVMPQVMALLPKL------PQ-QPQLLQTVCLTIGAYSKWF 506 (959)
Q Consensus 435 ~l~~~~~~~~~~~~~w~~~Ea~l~~l~~l~e~~~~~~-~~~l~~l~~~l~~l------p~-~~~v~~t~~~~ig~y~~~l 506 (959)
++...+. +. .|+|+.+...+|++|++|..++++. ..++-+++.-|..+ .+ ...|....++++|+|.+|+
T Consensus 485 Klarq~d--g~-EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvGQYpRFL 561 (1053)
T COG5101 485 KLARQLD--GK-EWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVGQYPRFL 561 (1053)
T ss_pred HHHHHhc--CC-ccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeeeccchHHH
Confidence 7776543 33 7999999999999999999998763 46677777654332 22 3567889999999999999
Q ss_pred hhCCCChhhHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhhhhh----CCHHHHHHHHHHHhhccCCCCCCHhhHH
Q 002148 507 DAASSDPSILASVLSILTSGMSTS-EDTAAAAALAFRHICDDCRKKLC----GYLDGLYNVYRTAVNGEGSLKVSAEDSL 581 (959)
Q Consensus 507 ~~~p~~~~~l~~~l~~l~~~l~~~-~~v~~~A~~al~~lc~~c~~~L~----~~~~~ll~~~~~~~~~~~~~~l~~~~~~ 581 (959)
+.|.. +|.+++..++..|++. ++++.+||..|.++++.|+.+.+ ...+.+++.+...+.+- ...+.+....
T Consensus 562 kahw~---FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~kt-T~dL~pqQ~h 637 (1053)
T COG5101 562 KAHWS---FLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKT-TGDLEPQQKH 637 (1053)
T ss_pred HHHHH---HHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhh-cccCChHHHh
Confidence 99997 9999999999999875 46999999999999999998765 22233333332222221 2257888999
Q ss_pred HHHHHHHHHHhcCChHHH-HHHHHHhhhhhHHHHHHHHhcCCCccccc-Cchhh-hHHHHHHHHHhhhcC-----CcccH
Q 002148 582 HLVEALSMVITELPQVDA-KKALEMLCLPVVTPLQEIINQGPEILQKK-HPRDL-TVHIDRFAYIFRYVN-----HPEAV 653 (959)
Q Consensus 582 ~l~eai~~vi~~~p~~~~-~~~l~~ll~p~~~~l~~~~~~~~~~~~~~-~~~~~-~~~l~~l~~~~~~~~-----~~~~~ 653 (959)
..|||+|.+|+..|...- ...+..+++-....|.++..++....+.- ...-+ ..+-...+.+..+.. -|+-+
T Consensus 638 tfYeAcg~vIse~p~~~~~~rlv~dlm~Lpn~aw~niv~qa~~n~~~L~d~~tvki~an~~ktnVa~ctslg~~fyPq~~ 717 (1053)
T COG5101 638 TFYEACGMVISEVPKTRDYKRLVLDLMDLPNSAWLNIVIQADENINRLSDTMTVKIDANKMKTNVAKCTSLGYRFYPQTC 717 (1053)
T ss_pred HHHHHHhHHHhccchhhHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhhcccccchHHH
Confidence 999999999999997543 35666667666677777666543211100 00000 011112222222211 13333
Q ss_pred HHHHHHHhHHHHH---HHHhh------cc-cH------HHHHHHHHHHHHHHH---HhhhhhhhhHHHHHHHHHHHHhhc
Q 002148 654 ADAIQRLWPIFKA---IFDIR------AW-DM------RTMESLCRACKYAVR---TSKRFMGITIGAILEEIQGLYQQH 714 (959)
Q Consensus 654 ~~~~~~~~~~l~~---il~~~------~~-~~------~i~e~~~~~l~~~~~---~~~~~~~~~l~~l~~~l~~~~~~~ 714 (959)
-.+...+.+-... +.... .. .+ .|...+...+..-+. .+.-.-..+++.+++.++-+|..+
T Consensus 718 ~~y~~ml~ly~avs~~Is~~vaaeg~iatktp~vrglrtiKkEIlkLv~tyIska~dl~~V~n~lv~~l~eaVl~DY~nN 797 (1053)
T COG5101 718 SSYCIMLFLYFAVSFDISNSVAAEGLIATKTPAVRGLRTIKKEILKLVATYISKARDLKFVQNDLVNMLCEAVLFDYKNN 797 (1053)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccCccccchHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3332222221111 11000 00 00 011111111111111 111122356788899988888874
Q ss_pred ----CCcchhHhHHHHHHHhCCCccchHHHHHHHHHHHHHHHHhhcCcccCCCCCCcHHHHHHHHHHHHhhCCCcccC--
Q 002148 715 ----QQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIP-- 788 (959)
Q Consensus 715 ----~~~~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pDl~~~~f~l~~~~~~~~p~~~l~-- 788 (959)
+.+..|.+.+.++...++- ......-.+.+++.+++.++. .+++++|+.+.+||.++..+..++...|+.
T Consensus 798 vPdardaevLnl~ttiV~~v~~~--i~~~~~l~l~svf~ctl~mi~--kdf~EypEhr~~f~~Ll~~inl~sF~afl~~p 873 (1053)
T COG5101 798 VPDARDAEVLNLGTTIVRNVESV--IYLQRELFLISVFICTLIMIV--KDFDEYPEHRKNFLLLLENINLFSFSAFLSFP 873 (1053)
T ss_pred CCccccHHHHHHHHHHHHHHHHH--hhhhhHHHHHHHHhhhHHHHH--hhhhhChHHHHHHHHHHHHHHHHhHHHHHcCC
Confidence 4578999999999998853 333344445556667777776 578999999999999999999987776664
Q ss_pred cCChHHHHHHHHHhccCCCchhHHHHHHHHHHhhcCcCCCCchhhHHHHHHHHhhccHHHHHHHHHHcccCCCCCCcccH
Q 002148 789 SSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETV 868 (959)
Q Consensus 789 s~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~l~~~~~~~~~~~~ 868 (959)
.+.|..+.+..++++.+.+++....+++.+..++..+..- ++++ ++++...+.-.++...+..+.++-+++.++..
T Consensus 874 ~p~Fklv~nti~wsfkhi~RDv~~~gLnill~l~kn~~~m-g~~~---~n~F~~~yy~s~l~~il~vltDsDhKsgF~~Q 949 (1053)
T COG5101 874 QPSFKLVYNTILWSFKHINRDVSDLGLNILLILFKNCHEM-GVPF---INQFYAQYYMSTLENILGVLTDSDHKSGFDQQ 949 (1053)
T ss_pred cHHHHHHHHHHHHHHHhccchHhhhhhHHHHHHHHHHHHh-CCch---HHHHHHHHHHHHHHHHHeeeeccchhccchHH
Confidence 6779999999999999999999999999999999865422 2444 67888888888999999888888899999999
Q ss_pred HHHHHHHHHHhh----------------HHHHHHHHHHH-hhCCCCCCCHHHHHHHHHHHHHHhcCCCchhhhHHHHHHH
Q 002148 869 TYALLALTRAYG----------------VRSLEWAKESV-SLIPLTALAEVERSRFLQALSEAASGVDVNAAMAPVEELS 931 (959)
Q Consensus 869 a~il~~l~~~~~----------------~~~~~wl~~~l-~~~p~~~~~~~~~~~f~~~l~~~~~~~~~~~f~~~l~~F~ 931 (959)
+-+|..+.+..- ..+++|+...+ .+|| ++|+++...|...++... +|-.-||..++||.
T Consensus 950 ~Llla~li~lv~dnkisVPlyd~~~~n~~~lseyi~~l~~~sfp--~it~e~v~~f~~~l~~~~--~d~~ifk~~~~df~ 1025 (1053)
T COG5101 950 CLLLAFLIRLVKDNKISVPLYDGINPNITILSEYIVGLFVKSFP--NITQESVKIFSVGLFELC--GDDEIFKEHVEDFR 1025 (1053)
T ss_pred HHHHHHHHHHHhccccccccccCCCCchhhHHHHHHHHHHhhcC--cccHHHHHHHHHHHHHHh--CcHHHHHHHHHHHh
Confidence 888887765431 25678888766 5899 789999999999998853 67889999999998
Q ss_pred HHHH
Q 002148 932 DVCR 935 (959)
Q Consensus 932 ~~~r 935 (959)
....
T Consensus 1026 vkv~ 1029 (1053)
T COG5101 1026 VKVY 1029 (1053)
T ss_pred hhee
Confidence 6443
No 5
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-43 Score=376.12 Aligned_cols=726 Identities=16% Similarity=0.216 Sum_probs=520.5
Q ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcChhhHHHHHHHhcc-CCCChhHHHHHHHHHHhhhhcCCCCCChhhHHHH
Q 002148 5 NTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHD-ATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGL 83 (959)
Q Consensus 5 ~~v~~av~~l~~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~-~~~~~~~~~faa~~L~~ki~~~w~~l~~~~~~~l 83 (959)
++|.+.++.- .+||++.|+.+...|.+|+.-|+.-.....+|.+ .+.+..+|-.|..+||+.++.+|..++.+....+
T Consensus 13 ~ql~~lLk~s-~Spn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~yi 91 (885)
T KOG2023|consen 13 QQLAQLLKNS-QSPNSETRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDYI 91 (885)
T ss_pred HHHHHHHHhc-cCCChHHHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhccccccccCCChHHHHHH
Confidence 4455555554 3679999999999999999999999988888864 2467789999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCC-CchhhHHHHhcccccccccc-ccc
Q 002148 84 QDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHP-EFVPGFLELLTVLPEEVFNY-KIA 161 (959)
Q Consensus 84 r~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~l~~~~-~~~~~~L~~L~~l~EE~~~~-~~~ 161 (959)
|..++.-+.. .++.||+-..-.+.+++...+-..||+ .++.+.+.+.+.. +.++..+..|..++|+.... +..
T Consensus 92 Ks~~l~~lgd---~~~lIr~tvGivITTI~s~~~~~~wpe--lLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~ 166 (885)
T KOG2023|consen 92 KSECLHGLGD---ASPLIRATVGIVITTIASTGGLQHWPE--LLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSD 166 (885)
T ss_pred HHHHHhhccC---chHHHHhhhhheeeeeecccccccchh--HHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhh
Confidence 9999888876 456899988888888998888889999 9999999887654 56788999999999986432 110
Q ss_pred CChhHHHHHHHHHHHhHHHHHHHHHHhhhhhHhHHHHHHHHHHHHhccCCCCCcccccchhHHHHHhcCCCCchHHHHHH
Q 002148 162 ARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVN 241 (959)
Q Consensus 162 l~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~~~~~~~l~~~~sWi~~~~~~~~~~~~~~~ll~~~~~~L~~~~~~~~a~~ 241 (959)
+ ..+-+.-.+|..++++... ++.++..++.|++..|-.. + ..+.. ..
T Consensus 167 ~-------~~rpl~~mipkfl~f~~h~--spkiRs~A~~cvNq~i~~~---~------qal~~--------------~i- 213 (885)
T KOG2023|consen 167 V-------LTRPLNIMIPKFLQFFKHP--SPKIRSHAVGCVNQFIIIQ---T------QALYV--------------HI- 213 (885)
T ss_pred c-------ccCchHHhHHHHHHHHhCC--ChhHHHHHHhhhhheeecC---c------HHHHH--------------HH-
Confidence 0 1122444566777765543 4568888888888776531 0 00100 00
Q ss_pred HHHHHHhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhhhcCCCHHHHHHHHHHHHHhhhHHHHHHhcCCchHHHHHHHH
Q 002148 242 VISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHAL 321 (959)
Q Consensus 242 ~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~l~~~~~d~e~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~l~~l 321 (959)
-+.++.+|. + ..++|++..+.+|+.++=+.+..+..+. ++...++++|
T Consensus 214 --------------------D~Fle~lFa--------l-anD~~~eVRk~vC~alv~Llevr~dkl~---phl~~IveyM 261 (885)
T KOG2023|consen 214 --------------------DKFLEILFA--------L-ANDEDPEVRKNVCRALVFLLEVRPDKLV---PHLDNIVEYM 261 (885)
T ss_pred --------------------HHHHHHHHH--------H-ccCCCHHHHHHHHHHHHHHHHhcHHhcc---cchHHHHHHH
Confidence 012222221 1 2577888999999999999988888775 6788999999
Q ss_pred HhhccCCCcchhhhhHHhHHHhHHHHhhcccccccCcccchHHHHHHHHhhhHHHHHHHHHHHHhhccCCCCC-------
Q 002148 322 LEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDY------- 394 (959)
Q Consensus 322 l~~~~~~~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~d~------- 394 (959)
|..+..+|++|+-.+.+||..+++.- --...+.|++.+++++++.+|+|.++.
T Consensus 262 L~~tqd~dE~VALEACEFwla~aeqp--------------------i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~ 321 (885)
T KOG2023|consen 262 LQRTQDVDENVALEACEFWLALAEQP--------------------ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNN 321 (885)
T ss_pred HHHccCcchhHHHHHHHHHHHHhcCc--------------------CcHHHHHHHHHHHHHHHHccCccccccHHHhcCc
Confidence 99999999999999999999988632 123578999999999999999997520
Q ss_pred CC--------------------------------CCh--hhhHHHHH--HHHHhhHHHHHhhhccChHHHHHHHHHHHHH
Q 002148 395 QD--------------------------------LSL--EDLKEFKH--TRYAVADVLIDAASVLGGDATLKILYIKFVE 438 (959)
Q Consensus 395 ~~--------------------------------~~~--d~~~~f~~--~R~~~~d~l~~~~~il~~~~~l~~l~~~l~~ 438 (959)
++ .|+ ||.|.|.+ -|+..+..+.-.+++.| +.++.++.+.+.+
T Consensus 322 eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~-~elL~~l~PlLk~ 400 (885)
T KOG2023|consen 322 EEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFG-DELLPILLPLLKE 400 (885)
T ss_pred cccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhH-HHHHHHHHHHHHH
Confidence 00 000 11122332 47766667766777888 6799999999998
Q ss_pred hhhhcCCCCCCcchhhHHHHHHHHhhcccCCccccchHHHhhhccC-CCC-cHHHHHHHHHHHHhhhhHHhhCCCChhhH
Q 002148 439 GVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPK-LPQ-QPQLLQTVCLTIGAYSKWFDAASSDPSIL 516 (959)
Q Consensus 439 ~~~~~~~~~~~w~~~Ea~l~~l~~l~e~~~~~~~~~l~~l~~~l~~-lp~-~~~v~~t~~~~ig~y~~~l~~~p~~~~~l 516 (959)
.+. +..|-..||+++++|++||++.....+++|.++.++.+ +.+ .|.||..+||+++||++|+...+. .+++
T Consensus 401 ~L~-----~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~-~~~f 474 (885)
T KOG2023|consen 401 HLS-----SEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSR-DEYF 474 (885)
T ss_pred HcC-----cchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCCh-Hhhh
Confidence 753 57899999999999999999998888899999998766 443 688999999999999999988653 2478
Q ss_pred HHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCC
Q 002148 517 ASVLSILTSGM-STSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELP 595 (959)
Q Consensus 517 ~~~l~~l~~~l-~~~~~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p 595 (959)
.+++.-+++.+ +..++|+.+||.||..+-++....|+||++.|++.+.-.+.. +...+-.-+|.|||.+..++.
T Consensus 475 ~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~k-----YQ~KNLlILYDAIgtlAdsvg 549 (885)
T KOG2023|consen 475 KPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGK-----YQKKNLLILYDAIGTLADSVG 549 (885)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHH-----HhhcceehHHHHHHHHHHHHH
Confidence 88887776544 545569999999999999999999999999999999888764 566777889999999998876
Q ss_pred hHHH-HHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhccc
Q 002148 596 QVDA-KKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWD 674 (959)
Q Consensus 596 ~~~~-~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~ 674 (959)
..-- ..|++.++.|++++|+.+-+. -+++...++|++.+..+++.. +.|..
T Consensus 550 ~~Ln~~~YiqiLmPPLi~KW~~lsd~---------DKdLfPLLEClSsia~AL~~g---------F~P~~---------- 601 (885)
T KOG2023|consen 550 HALNKPAYIQILMPPLIEKWELLSDS---------DKDLFPLLECLSSIASALGVG---------FLPYA---------- 601 (885)
T ss_pred HhcCcHHHHHHhccHHHHHHHhcCcc---------cchHHHHHHHHHHHHHHHhcc---------ccccC----------
Confidence 5433 378999999999999887442 145777899999998887642 11211
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCCcchhHhHHHHHHHhCCCccchHHHHHHHHHHHHHHHHh
Q 002148 675 MRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCL 754 (959)
Q Consensus 675 ~~i~e~~~~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~ 754 (959)
.++.+++++++.+........-.+ |+ ...+.+.-..+.|++++-+++..|.. +.+.+.+- .+..-.+..
T Consensus 602 ~~Vy~Rc~~il~~t~q~~~~~~~~--~~-----~~~pdkdfiI~sLDL~SGLaegLg~~--ie~Lva~s--nl~~lll~C 670 (885)
T KOG2023|consen 602 QPVYQRCFRILQKTLQLLAKVQQD--PT-----VEAPDKDFIIVSLDLLSGLAEGLGSH--IEPLVAQS--NLLDLLLQC 670 (885)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCC--cc-----ccCCCcceEEEeHHHHhHHHHHhhhc--hHHHhhhc--cHHHHHHHH
Confidence 234455555555442221110000 00 11123333456799999999999987 44443321 011112222
Q ss_pred hcCcccCCCCCCcHHHHHHHHHHHHhhCCCcccCcCChHHHHHHHHHhccCCCchhHHHHHHHHHHhhcCcCCCCchhhH
Q 002148 755 LTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFL 834 (959)
Q Consensus 755 l~~~~~~~~~pDl~~~~f~l~~~~~~~~p~~~l~s~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~li~~~~~~~~~~~~ 834 (959)
+ .++-||++++.|.|++.+.+.|+..+.+ .+..++......+...+..++.-|+--+..+..... ....
T Consensus 671 ~-----~D~~peVRQS~FALLGDltk~c~~~v~p--~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g----~~~~ 739 (885)
T KOG2023|consen 671 L-----QDEVPEVRQSAFALLGDLTKACFEHVIP--NLADFLPILGANLNPENISVCNNAIWAIGEIALKMG----LKMK 739 (885)
T ss_pred h-----ccCChHHHHHHHHHHHHHHHHHHHhccc--hHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhc----hhhh
Confidence 2 2678999999999999999999887776 445555554455555555555555555555443211 1111
Q ss_pred HHHHHHHhhccHHHHHHHHHHc-ccCCCCCCcccHHHHHHHHHHHhhHHHHHHHHHHH
Q 002148 835 SVRDSVIIPRGASITRILIASL-TGALPSSRLETVTYALLALTRAYGVRSLEWAKESV 891 (959)
Q Consensus 835 ~~~~~~~~~~g~~lv~~ll~~l-~~~~~~~~~~~~a~il~~l~~~~~~~~~~wl~~~l 891 (959)
+.+. .++..++..+ ....|++.+++.|..+.++...+|++++..+...+
T Consensus 740 ~~v~--------~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~ 789 (885)
T KOG2023|consen 740 QYVS--------PVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFM 789 (885)
T ss_pred hHHH--------HHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHH
Confidence 1122 2333444443 45678899999999999999999987766665544
No 6
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-36 Score=344.55 Aligned_cols=597 Identities=17% Similarity=0.223 Sum_probs=441.0
Q ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcChhhHHHHHHHhccCCCChhHHHHHHHHHHhhhhcCCCCCChhhHHHH
Q 002148 4 QNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGL 83 (959)
Q Consensus 4 ~~~v~~av~~l~~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~~~faa~~L~~ki~~~w~~l~~~~~~~l 83 (959)
++.+.+.+..|. +||++.|++|++.|+..-+++..-....+++.+ +.++++|.+||..+|+.+.+.|+.++++.+++|
T Consensus 3 ~~~l~qLl~~l~-spDn~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~-~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~si 80 (1075)
T KOG2171|consen 3 SAPLEQLLQQLL-SPDNEVRRQAEEALETLAKTEPLLPALAHILAT-SADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSI 80 (1075)
T ss_pred hhHHHHHHHHhc-CCCchHHHHHHHHHHHhhcccchHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHH
Confidence 467889999986 668889999999999655555566677777875 789999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCC-CCchhhHHHHhcccccccccccccC
Q 002148 84 QDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSH-PEFVPGFLELLTVLPEEVFNYKIAA 162 (959)
Q Consensus 84 r~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~l~~~-~~~~~~~L~~L~~l~EE~~~~~~~l 162 (959)
|..||..+.+ +....||+|+|.++|.++....++.||+ +++.+++..++. +...+..+.+|..+|+-+++..
T Consensus 81 ks~lL~~~~~--E~~~~vr~k~~dviAeia~~~l~e~WPe--ll~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~--- 153 (1075)
T KOG2171|consen 81 KSSLLEIIQS--ETEPSVRHKLADVIAEIARNDLPEKWPE--LLQFLFQSTKSPNPSLRESALLILSSLPETFGNTL--- 153 (1075)
T ss_pred HHHHHHHHHh--ccchHHHHHHHHHHHHHHHhccccchHH--HHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcccc---
Confidence 9999999988 4667899999999999999998889999 999999988764 5567999999999999987642
Q ss_pred ChhHHHHHHHHHHHhHHHHHHHHHHhhhhh--HhHHHHHHHHHHHHhccCCCCCcccccchhHHHHHhcCCCCchHHHHH
Q 002148 163 RPERRRQFEKELTSQMEVALSTLTACLHIN--ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASV 240 (959)
Q Consensus 163 ~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~--~~~~~~l~~~~sWi~~~~~~~~~~~~~~~ll~~~~~~L~~~~~~~~a~ 240 (959)
..+...+..++.++++++ .++..+++++.+.+.+. +.
T Consensus 154 ------------~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~---~~-------------------------- 192 (1075)
T KOG2171|consen 154 ------------QPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYL---EN-------------------------- 192 (1075)
T ss_pred ------------chhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHh---cc--------------------------
Confidence 346778888999888875 37777788888777642 10
Q ss_pred HHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhhhcCCCHHHHHHHHHHHHHhhhHHHHHHhcCCchHHHHHHH
Q 002148 241 NVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHA 320 (959)
Q Consensus 241 ~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~l~~~~~d~e~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~l~~ 320 (959)
.....+.+..++|.++...+... .++|++......+.+.++++..++++. +.+.+++++
T Consensus 193 -----------------~~~~~~~~~~llP~~l~vl~~~i-~~~d~~~a~~~l~~l~El~e~~pk~l~---~~l~~ii~~ 251 (1075)
T KOG2171|consen 193 -----------------NKSEVDKFRDLLPSLLNVLQEVI-QDGDDDAAKSALEALIELLESEPKLLR---PHLSQIIQF 251 (1075)
T ss_pred -----------------chHHHHHHHHHhHHHHHHhHhhh-hccchHHHHHHHHHHHHHHhhchHHHH---HHHHHHHHH
Confidence 00123455666777665333322 244556677888999999999999885 578899999
Q ss_pred HHhhccCC--CcchhhhhHHhHHHhHHHHhhcccccccCcccchHHHHHHHHhhhHHHHHHHHHHHHhhccCCC-CCCCC
Q 002148 321 LLEVASHP--EYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQ-DYQDL 397 (959)
Q Consensus 321 ll~~~~~~--~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~-d~~~~ 397 (959)
.+.+.++. ++.++..+++|...+.+... .......++..+|+..++. |.-|. +.++|
T Consensus 252 ~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap-------------------~~~k~~~~~~~~lv~~~l~-~mte~~~D~ew 311 (1075)
T KOG2171|consen 252 SLEIAKNKELENSIRHLALEFLVSLSEYAP-------------------AMCKKLALLGHTLVPVLLA-MMTEEEDDDEW 311 (1075)
T ss_pred HHHHhhcccccHHHHHHHHHHHHHHHHhhH-------------------HHhhhchhhhccHHHHHHH-hcCCcccchhh
Confidence 99999987 67899999999888877531 1223344556667776665 43443 23455
Q ss_pred Ch---hhhHHHH-HHHHHhhHHHHHhhhccChHHHHHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHhhcccCCcccc
Q 002148 398 SL---EDLKEFK-HTRYAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAE 473 (959)
Q Consensus 398 ~~---d~~~~f~-~~R~~~~d~l~~~~~il~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~l~e~~~~~~~~ 473 (959)
.. .|.|++. .+|.. ...+..++.-+|+..++..+++.+...+. +.+|..+.|+|.++++++|++......
T Consensus 312 ~~~d~~ded~~~~~~~~A-~~~lDrlA~~L~g~~v~p~~~~~l~~~l~-----S~~w~~R~AaL~Als~i~EGc~~~m~~ 385 (1075)
T KOG2171|consen 312 SNEDDLDEDDEETPYRAA-EQALDRLALHLGGKQVLPPLFEALEAMLQ-----STEWKERHAALLALSVIAEGCSDVMIG 385 (1075)
T ss_pred ccccccccccccCcHHHH-HHHHHHHHhcCChhhehHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHcccHHHHHH
Confidence 32 1222322 22322 23455566678888899989998888763 578999999999999999999877667
Q ss_pred chHHHhhhccC-CC-CcHHHHHHHHHHHHhhhhHHhhCCCC--hhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhh
Q 002148 474 VMPQVMALLPK-LP-QQPQLLQTVCLTIGAYSKWFDAASSD--PSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCR 549 (959)
Q Consensus 474 ~l~~l~~~l~~-lp-~~~~v~~t~~~~ig~y~~~l~~~p~~--~~~l~~~l~~l~~~l~~~~~v~~~A~~al~~lc~~c~ 549 (959)
.++++++++.+ +. +||+||+++|..||+.+.-|..+-+. ++.+++.+-.....-.+++ |+.+|+.|+..|.+.|.
T Consensus 386 ~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~r-V~ahAa~al~nf~E~~~ 464 (1075)
T KOG2171|consen 386 NLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVR-VQAHAAAALVNFSEECD 464 (1075)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchH-HHHHHHHHHHHHHHhCc
Confidence 89999998765 53 59999999999999999866543211 1356656655555555566 99999999999999997
Q ss_pred h-hhhCCHHHHHHH-HHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccc
Q 002148 550 K-KLCGYLDGLYNV-YRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQK 627 (959)
Q Consensus 550 ~-~L~~~~~~ll~~-~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~ 627 (959)
+ .+.||++.|++. +.-+.++ -+...++.++.+||++..+.. +...+|..+ +|..+..++.+....
T Consensus 465 ~~~l~pYLd~lm~~~l~~L~~~-----~~~~v~e~vvtaIasvA~AA~-~~F~pY~d~----~Mp~L~~~L~n~~~~--- 531 (1075)
T KOG2171|consen 465 KSILEPYLDGLMEKKLLLLLQS-----SKPYVQEQAVTAIASVADAAQ-EKFIPYFDR----LMPLLKNFLQNADDK--- 531 (1075)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC-----CchhHHHHHHHHHHHHHHHHh-hhhHhHHHH----HHHHHHHHHhCCCch---
Confidence 5 677999999994 4444443 357889999999999987742 233345444 445556666655421
Q ss_pred cCchhhhHHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhh-cccHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 002148 628 KHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIR-AWDMRTMESLCRACKYAVRTSKRFMGITIGAILEE 706 (959)
Q Consensus 628 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~-~~~~~i~e~~~~~l~~~~~~~~~~~~~~l~~l~~~ 706 (959)
+....-...++|++.+.+.++. +.+.+.-++++.++-.+...- ..|...++.....+.++.+.+|+++.|++|.++.-
T Consensus 532 d~r~LrgktmEcisli~~AVGk-e~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmpp 610 (1075)
T KOG2171|consen 532 DLRELRGKTMECLSLIARAVGK-EKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPP 610 (1075)
T ss_pred hhHHHHhhHHHHHHHHHHHhhh-hhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHH
Confidence 1111123458999999888763 456666677777776665222 23445677778888899999999999999998887
Q ss_pred HHHHHh
Q 002148 707 IQGLYQ 712 (959)
Q Consensus 707 l~~~~~ 712 (959)
+...-+
T Consensus 611 l~~ta~ 616 (1075)
T KOG2171|consen 611 LLKTAR 616 (1075)
T ss_pred HHHhhc
Confidence 665444
No 7
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.4e-31 Score=308.90 Aligned_cols=889 Identities=14% Similarity=0.172 Sum_probs=562.2
Q ss_pred HHHHHHHHHHHccC-CCHHHHHHHHHHHHHHhcChhhHHHHHHHhccCCCChhHHHHHHHHHHhhhhcCCCCCChhhHHH
Q 002148 4 QNTVKEALNALYHH-PDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRG 82 (959)
Q Consensus 4 ~~~v~~av~~l~~~-~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~~~faa~~L~~ki~~~w~~l~~~~~~~ 82 (959)
...+.+|+...+++ ++.+.|.+|+++|.+||..+++|..|..+|.. ++.++++|||.|+|.+.|+.+|+.+|.+++.+
T Consensus 9 ~~~lldavv~~~~~~~s~~~r~eA~~~l~~lke~~~~~~~~~~iL~~-s~~~~~k~f~Lqlle~vik~~W~~~~~~~r~g 87 (1041)
T KOG2020|consen 9 DSELLDAVVVTLNPEGSNEERGEAQQILEELKEEPDSWLQVYLILKL-STNPILKYFALQLLENVIKFRWNSLPVEERVG 87 (1041)
T ss_pred HHHHHHhHHHHhCcccchHHHHHHHHHHHHHHhCcchHHHHHHHHhc-cCCchhheeeHHHHHHHHHHhcccCCccccHH
Confidence 45566777776666 78889999999999999999999999999987 67889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC------CChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCCCchhhHHHHhcccccccc
Q 002148 83 LQDSLNTLLKKFHK------GPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVF 156 (959)
Q Consensus 83 lr~~Ll~~l~~~~~------~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~l~~~~~~~~~~L~~L~~l~EE~~ 156 (959)
+|++++..+...+. ..+.+++||+..+..++++.+|..||+ +++++.+....++..+++.+.+|+.|.||+.
T Consensus 88 lk~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp~~wp~--~i~dl~~~s~~s~~~~el~m~Il~lLsEdvf 165 (1041)
T KOG2020|consen 88 LKNYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWPAIWPT--FIPDLAQSSKTSETVCELSMIILLLLSEEVF 165 (1041)
T ss_pred HHHHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHHhhcch--hhhhHHHHhhcCcccchHHHHHHHHHHHHHh
Confidence 99999999877431 246899999999999999999999999 9999999998888889999999999999998
Q ss_pred cccccCChhHHH-HHHHHHHHhHHHHHHHHHHhhhhh--HhHHHH---HHHHHHHHhccCCCCCcccccchhHHHH-Hhc
Q 002148 157 NYKIAARPERRR-QFEKELTSQMEVALSTLTACLHIN--ELKEQV---LEAFASWLRLKHRIPGSVLASHPLVLTA-LSS 229 (959)
Q Consensus 157 ~~~~~l~~~~r~-~l~~~l~~~~~~vl~~l~~~l~~~--~~~~~~---l~~~~sWi~~~~~~~~~~~~~~~ll~~~-~~~ 229 (959)
+....-...+|. -++..+...+..+.+++....... ++...+ +.++.+||++++ +.....+..+ ...
T Consensus 166 ~~ss~~~~q~~~~il~~~~~~~f~~i~~l~~~~~~~a~~~~~~atl~tl~~fl~wip~~~------I~~tn~l~~~l~~~ 239 (1041)
T KOG2020|consen 166 DFSSSELTQQKIIILKNLLENEFQQIFTLCSYIKEKANSELLSATLETLLRFLEWIPLGY------IFETNILELLLNKF 239 (1041)
T ss_pred cccchHHHhhhHHHHHHHhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcccHHH------HHHhhhHHHHHHhc
Confidence 764322223333 344555666777787777755442 244444 555556766653 3322334444 455
Q ss_pred CCCCchHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHH------HHhhHHHhhhc-CCCH-HHHHHHHHHHHHhhh
Q 002148 230 LHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQ------IMSLKAHLTDS-SKDE-EDVKAIARLFADMGD 301 (959)
Q Consensus 230 L~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~------v~~l~~~l~~~-~~d~-e~~~~l~~l~~~~~~ 301 (959)
++.++.+..|++|+.++++.+....+ ....++.+..+.. ...+.+.+..+ ..|. .+.+.++.+++.+++
T Consensus 240 ln~~~~r~~al~CL~ei~s~~~~~~~---~~~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~dq~~fi~~l~~~l~~f~~ 316 (1041)
T KOG2020|consen 240 LNAPELRNNALSCLTELLSRKRSIYE---RKTVPMFNLTIYQLRSIPQDLDIPEVYSSLSDEDQDSFIEKLAQFLSLFFE 316 (1041)
T ss_pred cchHHHHHHHHHHHHHHHhccccchh---HHhHHHHHHHHHHHHHhhhhhchhhhhhcccHhHHHHHHHHHHHHHHHHHH
Confidence 77889999999999999987653210 0112233222211 11222222222 2334 567999999999999
Q ss_pred HHHHHHhcCCch---HHHHHHHHHhhccCCCcchhhhhHHhHHHhHHHHhhc-ccccccCc-ccch--HHHHHHHHhhhH
Q 002148 302 SYVELIATGSDE---SMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKR-DSYISFGN-EASA--EAERSRRLQVFR 374 (959)
Q Consensus 302 ~~~~~l~~~~~~---~~~~l~~ll~~~~~~~~~v~~~~l~fW~~l~~~~~~~-~~~~~~~~-~~~~--~~~~~~~~~~~~ 374 (959)
.+..++...... .......++..+..++.++...+++.|..+..+.+.. ..+...+. -+.. -.+.+-+.+.|.
T Consensus 317 ~~~~lle~~~~~~~~~~~~~~~li~i~~~~~se~~~~~ld~W~~lv~~l~~~~~~ll~~s~~~~~~~~~~ri~~rk~~y~ 396 (1041)
T KOG2020|consen 317 QHIALLESSLSQRPVLLEALLELILISTIEPSEIFKICLDYWNKLVADLYYNKPPLLQLSTTLPSISDYSRIDFRKSIYQ 396 (1041)
T ss_pred HHHHHHcCchhhhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhhhcccccccccccccccccchhccchHHHHHH
Confidence 999988762211 2222333344444444455555999999998886643 11110000 0000 000112356788
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCChhhhHHHHHHH---------HHhhHHHHHhhhccChHHHHHHHHHHHHHhhhhcCC
Q 002148 375 SAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTR---------YAVADVLIDAASVLGGDATLKILYIKFVEGVACCGN 445 (959)
Q Consensus 375 ~~~~~Ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R---------~~~~d~l~~~~~il~~~~~l~~l~~~l~~~~~~~~~ 445 (959)
.++.++....+.+|.-|++.--.+.+..+.+++++ ..+.+.+...+..-+ ...-..+...+...+. +
T Consensus 397 ~~~~~~r~l~l~~m~~Pe~vlive~~~~~~vre~~~~~~~~~ly~~~~e~l~~~~~L~~-~~t~~~~~~kl~~~l~---~ 472 (1041)
T KOG2020|consen 397 EFLSKLRLLRLERMAKPEEVLIVENEQGEIVREFMKDHDFITLYPVLRETLVYLLHLDV-VDTEKIMTEKLAIQLD---G 472 (1041)
T ss_pred HHHHHHHHHHHHHhcCchheeEEechHHHHHHHhccCcchhhhhHHHHHHHHHHHHhhh-hhhhhhhhHhHHHHhh---H
Confidence 99999999999999999853222222223333332 233334433333222 2233333344333322 2
Q ss_pred CCCCcchhhHHHHHHHHhhcccCCc-cccchHHHhhhccC------CCC-cHHHHHHHHHHHHhhhhHHhhCCCChhhHH
Q 002148 446 KHNEWRPAEAALFCIRAISTYVSVV-EAEVMPQVMALLPK------LPQ-QPQLLQTVCLTIGAYSKWFDAASSDPSILA 517 (959)
Q Consensus 446 ~~~~w~~~Ea~l~~l~~l~e~~~~~-~~~~l~~l~~~l~~------lp~-~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~ 517 (959)
..++|...-.-+|++++++..+.++ +..++..++.-+.+ -++ ...+....++++|.|..|+..|.. +++
T Consensus 473 ~~~~~~~ln~l~~ai~sisg~~~e~~e~k~~~~v~~d~l~l~E~~~~kdn~avi~~Ni~~vv~q~p~Fl~~h~~---~Lk 549 (1041)
T KOG2020|consen 473 DEWSLHNLNRLCWAIGSISGRMLEDMEKKFFVAVIRDLLNLCERKRGKDNKAVIASNIMYVVGQYPRFLKAHWK---FLK 549 (1041)
T ss_pred HHHhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHhcccchHHHHHHH---HHH
Confidence 2678999999999999888866543 22333332222211 122 245788899999999999999954 888
Q ss_pred HHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhhh--------CCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHH
Q 002148 518 SVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLC--------GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALS 588 (959)
Q Consensus 518 ~~l~~l~~~l~~~~-~v~~~A~~al~~lc~~c~~~L~--------~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~ 588 (959)
++...+++.++... .++.+||.+|.++...|+.+.+ |+.+.++.-+..... .+.+.++...++++|
T Consensus 550 t~~~~L~efmhe~h~gvqdmacd~F~~ii~~~~~~fv~~~~~e~~~fv~~~~~~l~~i~~-----~l~~~q~~~~~~al~ 624 (1041)
T KOG2020|consen 550 TVVHKLFEFMHETHEGVQDMACDTFIKIIQKCKRHFVITQLGETKPFVGELLLNLTAITE-----DLQPQQRHTFYEALG 624 (1041)
T ss_pred HHHHHHHHHHhhhhHHHHhhhHHHHHHHHHhhhhhheeecccccccchHHHhhcccchhc-----CchHHHHHHHHHHHH
Confidence 88899999888653 4899999999999999987532 566666655555443 367889999999999
Q ss_pred HHHhc-CChHHHHHHHHHhhhhhHHHHHHHHhcCCCccc----ccCchhhhHHHHHHHHHhhhcCCc---------ccHH
Q 002148 589 MVITE-LPQVDAKKALEMLCLPVVTPLQEIINQGPEILQ----KKHPRDLTVHIDRFAYIFRYVNHP---------EAVA 654 (959)
Q Consensus 589 ~vi~~-~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~----~~~~~~~~~~l~~l~~~~~~~~~~---------~~~~ 654 (959)
.++.+ .+++....+.+.+..-.-..+.+++.++....+ ....+.+...+...+...+.++.+ ....
T Consensus 625 ~~V~~~~~~~~~~~~~~~~~vl~~~~~~nii~~~~~~~~~l~~~~~v~s~~~i~~~~~~~~~sl~~~f~~~~~~~~~d~~ 704 (1041)
T KOG2020|consen 625 LMVSAEIDPAKAERLQSKLMVLPNRAWINIILQARCNDEILKLLETVKSLLNILKTNSRALTSLGSTFVPQLGKIYLDML 704 (1041)
T ss_pred HHHHHhCCHhhHHHHHhcccccchhhhcchhhcCcccHHhhcchHHHHHHHHHHHhHHHHHHhcCcccccccccccHHHH
Confidence 55554 555665666666665555566665555443211 011122223344455555554432 1112
Q ss_pred HHHHHHhHHHHHHHHh---hcccHHHHHHHHHHHHHH---HHHh-------hhhhhhhHHHHHHHHHHHHhh----cCCc
Q 002148 655 DAIQRLWPIFKAIFDI---RAWDMRTMESLCRACKYA---VRTS-------KRFMGITIGAILEEIQGLYQQ----HQQP 717 (959)
Q Consensus 655 ~~~~~~~~~l~~il~~---~~~~~~i~e~~~~~l~~~---~~~~-------~~~~~~~l~~l~~~l~~~~~~----~~~~ 717 (959)
.++....+.+....+. ...-.+.+.....+-+.+ +.++ ......++|+++....-+|.. .+.+
T Consensus 705 ~l~~~~s~~v~~~~~~~~~~~t~~~~v~~~~svk~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~nvPd~r~~ 784 (1041)
T KOG2020|consen 705 QLYIKQSELVSINVTAGGSEKTKTPFVKTLRSVKREILKLLETFISKSEQRDLYLLMLVPPLLDAVLFDYLDNVPDYREN 784 (1041)
T ss_pred HHHHHhcccccHHHhcccccccccHHHHHHHHHHHHHHHHHHhccCcccchhHHHHhhhhHHHHHHHHHHHccCcchhcc
Confidence 2222222222221111 011111111111111111 1111 112234566666666655553 3445
Q ss_pred chhHhHHHHHHHhCCCccchHHHHHHHHHHHHHHHHhhcCcccCCCCCCcHHHHHHHHHHHHhhCCCccc--CcCChHHH
Q 002148 718 CFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFI--PSSVFPSL 795 (959)
Q Consensus 718 ~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pDl~~~~f~l~~~~~~~~p~~~l--~s~~l~~~ 795 (959)
..+.+-..++.++|.. +...+...+.+++.+++.++. .+..+.||.+..||.++..+...++.++. +++.+..+
T Consensus 785 ~vl~l~~~iv~~Lg~~--i~~~~~~i~~~v~~c~l~m~~--~d~qe~~e~~~~f~~lle~l~~~~~~~~~~l~~~~~~~~ 860 (1041)
T KOG2020|consen 785 EVLSLNATIVPKLGEF--IPAELPLINIAVLECTLEMIN--KDFQEYPEHRLNFLLLLEALLLFCFPAFSELPADQVKLV 860 (1041)
T ss_pred hHHHhhhhhhhhhhhH--hhhhccHHHHHHHhhhhhccc--cccccchHHHHHHHHHHHHHHHhhhHHHHcCCchhhHHH
Confidence 6677777777777765 444454556666677766665 56789999999999999999988777665 35667788
Q ss_pred HHHHHHhccCCCchhHHHHHHHHHHhhcCcCCCCchhhHHHHHHHHhhccHHHHHHHHHHcccCCCCCCcccHHHHHHHH
Q 002148 796 VDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETVTYALLAL 875 (959)
Q Consensus 796 ~~~~~~~l~~~~~~~~~~~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~l~~~~~~~~~~~~a~il~~l 875 (959)
.+.+.++..+..+....+++..+..+......-+ ...++++..++..+....+..+.+..+.+.+..-+-.+..+
T Consensus 861 ~~si~~~f~h~~r~i~~~~l~~l~~l~k~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~f~~~~L~~~~l 935 (1041)
T KOG2020|consen 861 SDSIVWAFHHTMRNIAENGLNILLELLKNLAEME-----KFANAFYQTYFLSLLQKIIAVLTDTDHKAGFTKQVLKLQFL 935 (1041)
T ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHHHHhccchhhcchHHHHHHHHH
Confidence 8888888888889999999999988886432111 22567778888888887777776666666665555444444
Q ss_pred HHHhhHH-HH-----------------HHHHHHH-hhCCCCCCCHHHHHHHHHHHHHHhcCCCchhhhHHHHH
Q 002148 876 TRAYGVR-SL-----------------EWAKESV-SLIPLTALAEVERSRFLQALSEAASGVDVNAAMAPVEE 929 (959)
Q Consensus 876 ~~~~~~~-~~-----------------~wl~~~l-~~~p~~~~~~~~~~~f~~~l~~~~~~~~~~~f~~~l~~ 929 (959)
.+..-+. +. ++....+ +.|| +.++++.+.|...++... ++...+++.++|
T Consensus 936 ~~l~~~~~~~~~l~~~~~v~~n~~~L~e~i~~~l~~~f~--~~~~~~v~~~~~~~~~~~--~~~~~~k~~~~d 1004 (1041)
T KOG2020|consen 936 FRLVESAKLHTPLLQGNVVHGNQAFLREYIYGLLRPAFP--NLTDEQVRAFDIGLFDEC--KDVSPFKDHVRD 1004 (1041)
T ss_pred HHHHHhhhHHHhhccccccchHHHHHHHHHHHhhhhhch--hhchHHHHHHhHHHHHHh--cccchhhcchhh
Confidence 4332111 22 2222222 3455 456777788888877743 566677777777
No 8
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-27 Score=266.32 Aligned_cols=713 Identities=14% Similarity=0.169 Sum_probs=448.2
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHhcChhhHHHHHHHhccCCCChhHHHHHHHHHHhhhhcCCCC---------CCh
Q 002148 7 VKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEE---------LPS 77 (959)
Q Consensus 7 v~~av~~l~~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~~~faa~~L~~ki~~~w~~---------l~~ 77 (959)
+.+++.+-. .+||..|+.|++.|++++|.|+....+.+++.+.+.+..||+-||..||++|.+.|+. +++
T Consensus 6 l~~~~~~T~-d~d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~e 84 (1010)
T KOG1991|consen 6 LLQIFRATI-DSDAKERKAAEQQLNQLEKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIPE 84 (1010)
T ss_pred HHHHHHHhc-CCChHHHHHHHHHHHHhhcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCCh
Confidence 555555554 4569999999999999999999999999999887778889999999999999999974 467
Q ss_pred hhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCC-CchhhHHHHhcccccccc
Q 002148 78 EAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHP-EFVPGFLELLTVLPEEVF 156 (959)
Q Consensus 78 ~~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~l~~~~-~~~~~~L~~L~~l~EE~~ 156 (959)
+++..+|+.++..+.+ +|..+|.++..++-.++...+|++||+ +++.+...++++. +....+|.+|..|..-..
T Consensus 85 ~dk~~irenIl~~iv~---~p~~iRvql~~~l~~Ii~~D~p~~Wp~--l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye 159 (1010)
T KOG1991|consen 85 EDKAVIRENILETIVQ---VPELIRVQLTACLNTIIKADYPEQWPG--LLDKIKNLLQSQDANHVYGALLCLYQLFKTYE 159 (1010)
T ss_pred HHHHHHHHHHHHHHHh---CchHHHHHHHHHHHHHHhcCCcccchh--HHHHHHHHhcCcchhhHHHHHHHHHHHHHHHh
Confidence 8999999999999998 799999999999999999999999998 9999988887764 334556777766644221
Q ss_pred cccccCChhHHHHHHHHHHHhHHHHHHHHHHhhhhh-----HhHHHHHHHHHHHHhccCCCCCcccccchhHHHHHhcCC
Q 002148 157 NYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN-----ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLH 231 (959)
Q Consensus 157 ~~~~~l~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~-----~~~~~~l~~~~sWi~~~~~~~~~~~~~~~ll~~~~~~L~ 231 (959)
.. ..++|..+...+...+|.++++..+.++.+ ++...++|.+.+.+.+ ++|.. |.
T Consensus 160 ---~k-~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~--~LP~~--------------L~ 219 (1010)
T KOG1991|consen 160 ---WK-KDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYY--ELPLE--------------LS 219 (1010)
T ss_pred ---hc-cccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHH--hCCHH--------------hh
Confidence 11 145667777888999999999999888764 5788999999999987 47653 45
Q ss_pred CCchHHHHHHHHHHHHhhhccCC--CCCCCCchhHHHHHH-----HHHHhhHHHhhhc-CCCHHHHHHHHHHHHHhhhHH
Q 002148 232 SEILSEASVNVISELIHYSAAGS--SGGATVNMPLIQVIV-----PQIMSLKAHLTDS-SKDEEDVKAIARLFADMGDSY 303 (959)
Q Consensus 232 ~~~~~~~a~~~l~~ii~~~~~~~--~~~~~~~~~~~~~l~-----~~v~~l~~~l~~~-~~d~e~~~~l~~l~~~~~~~~ 303 (959)
+++.+..+++.+..|++++-+.. +-|++.+..+.+|-+ ..+..+.+++... .... ..+.++..|
T Consensus 220 ~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~-~y~~Fa~~f------- 291 (1010)
T KOG1991|consen 220 APETFTSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVP-EYKEFAQMF------- 291 (1010)
T ss_pred CchhHHHHHHHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccch-hhHHHHHHH-------
Confidence 67788899999999998765421 123333333333322 2222233332211 0000 011111111
Q ss_pred HHHHhcCCchHHHHHHHHHhhcc------CCCcchhhhhHHhHHHhHHHHhhcccccccCcccchHHHHHHHHhhhHHHH
Q 002148 304 VELIATGSDESMLIVHALLEVAS------HPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAY 377 (959)
Q Consensus 304 ~~~l~~~~~~~~~~l~~ll~~~~------~~~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (959)
..- .+..+++..++... +-.+.|-..++.|.. +++.+ ...|..++|++
T Consensus 292 ~~n------~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~fl~---~~Vs~-----------------~~twkll~PHl 345 (1010)
T KOG1991|consen 292 LKN------FAQGILEVFLKILEQWRQQLYLSDRVLYYLLNFLE---QCVSH-----------------ASTWKLLKPHL 345 (1010)
T ss_pred HHH------HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH---HhccH-----------------HHHHHHhhhHH
Confidence 111 11223333333222 224455555555532 22221 24688999998
Q ss_pred HHHHHHHH-hhccCCC-CCCCCChhhh----------HHHHHHHHHhhHHHHHhhhccChH---HHHHHHHHHHHHhhhh
Q 002148 378 ESLVSLVS-FRVQYPQ-DYQDLSLEDL----------KEFKHTRYAVADVLIDAASVLGGD---ATLKILYIKFVEGVAC 442 (959)
Q Consensus 378 ~~Ll~~l~-~k~~~p~-d~~~~~~d~~----------~~f~~~R~~~~d~l~~~~~il~~~---~~l~~l~~~l~~~~~~ 442 (959)
.-++..++ --|.|-+ |.+.|++|.. +++.+-+-...+++-.++.--|++ .++..+.+.+++...+
T Consensus 346 ~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~ 425 (1010)
T KOG1991|consen 346 QVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEA 425 (1010)
T ss_pred HHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhccc
Confidence 87775443 3333333 3344654432 222233445556666666666543 2555666666665444
Q ss_pred cCCCCCCcchhhHHHHHHHHhhcccCCccccchHHHhhhc-----cCCC-CcHHHHHHHHHHHHhhhhHHhhCCCChhhH
Q 002148 443 CGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALL-----PKLP-QQPQLLQTVCLTIGAYSKWFDAASSDPSIL 516 (959)
Q Consensus 443 ~~~~~~~w~~~Ea~l~~l~~l~e~~~~~~~~~l~~l~~~l-----~~lp-~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l 516 (959)
+.+ ..+.++.|.||++++++++-+... +.+-.++-.+| |.+. +-..+|..+|+++++|++-=-.+|. .+
T Consensus 426 ~~~-~~~~rqkdGAL~~vgsl~~~L~K~-s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~---~l 500 (1010)
T KOG1991|consen 426 SPP-NKNPRQKDGALRMVGSLASILLKK-SPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPN---NL 500 (1010)
T ss_pred CCC-ccChhhhhhHHHHHHHHHHHHccC-CchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChH---HH
Confidence 333 568899999999999999777654 22222222222 2332 2468999999999999952223343 78
Q ss_pred HHHHHHHHhccCC-CH-HHHHHHHHHHHHHHHHhhh---hhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHH
Q 002148 517 ASVLSILTSGMST-SE-DTAAAAALAFRHICDDCRK---KLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVI 591 (959)
Q Consensus 517 ~~~l~~l~~~l~~-~~-~v~~~A~~al~~lc~~c~~---~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi 591 (959)
..++....++|.+ ++ +|+..|+.|++.|...|.. .+.++++.+++.+..+.+. ...++-..++|.+ +
T Consensus 501 ~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne-----~End~Lt~vme~i---V 572 (1010)
T KOG1991|consen 501 SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNE-----VENDDLTNVMEKI---V 572 (1010)
T ss_pred HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHh-----cchhHHHHHHHHH---H
Confidence 8888888888873 32 5999999999999998874 4889999999999998764 5566777777776 4
Q ss_pred hcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchh--hhHHHHHHHHHhhhcCC-cccHHHHHHHHhHHHHHHH
Q 002148 592 TELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRD--LTVHIDRFAYIFRYVNH-PEAVADAIQRLWPIFKAIF 668 (959)
Q Consensus 592 ~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~--~~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~il 668 (959)
...+ |+..++...+++.+.+...+++.......+....++ ....|++|+++..++.. |+-..+....+.|++..++
T Consensus 573 ~~fs-eElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL 651 (1010)
T KOG1991|consen 573 CKFS-EELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFIL 651 (1010)
T ss_pred HHHH-HhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 4443 567788888899999888898886222111111122 23457888888887764 3434445556777777777
Q ss_pred HhhcccHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCC---cchhHhHHHHHHHhCCCccc-hHHHHHHH
Q 002148 669 DIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQ---PCFLYLSSEVIKIFGSDPSC-ASYLHNLI 744 (959)
Q Consensus 669 ~~~~~~~~i~e~~~~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~---~~~L~l~~~li~~~~~~~~~-~~~l~~~~ 744 (959)
++... ++.|.++.+... .+...+.+.|.+=.+++.+...|+.... +.++.++...+. +|..+-. .+...+++
T Consensus 652 ~~~i~--dfyeE~~ei~~~-~t~~~~~Isp~mW~ll~li~e~~~~~~~dyf~d~~~~l~N~vt-~g~~~~~s~~~y~~il 727 (1010)
T KOG1991|consen 652 KNDIT--DFYEELLEIVSS-LTFLSKEISPIMWGLLELILEVFQDDGIDYFTDMMPALHNYVT-YGTPSLLSNPDYLQIL 727 (1010)
T ss_pred HHhhH--HHHHHHHHHHhh-hhhhhcccCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhee-eCchhhhccchHHHHH
Confidence 66433 567777777653 2333334444444455555555555332 222333332222 2332111 11122222
Q ss_pred HHHHHHHHHhhcCcccCCCCCCcHHHHHHHHHHHHhhCCCcccCcCChHHHHHHHHHhccC
Q 002148 745 EALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITV 805 (959)
Q Consensus 745 ~~l~~~~~~~l~~~~~~~~~pDl~~~~f~l~~~~~~~~p~~~l~s~~l~~~~~~~~~~l~~ 805 (959)
-.++. ..+.+ .-.+++|.. .-+.++.-++..|-+ .+ +..++.++..++..++.
T Consensus 728 ~~i~~---~~l~~--e~~~D~d~~-~a~kLle~iiL~~kg-~~-dq~iplf~~~a~~~l~~ 780 (1010)
T KOG1991|consen 728 LEIIK---KVLTS--ENGEDSDCE-SACKLLEVIILNCKG-LL-DQYIPLFLELALSRLTR 780 (1010)
T ss_pred HHHHH---HHHcC--CCCchHHHH-HHHHHHHHHHHHhcC-cH-hhHhHHHHHHHHHHHhc
Confidence 22222 22332 122344433 346777777777766 22 23566666776666654
No 9
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.5e-26 Score=248.84 Aligned_cols=617 Identities=17% Similarity=0.203 Sum_probs=408.7
Q ss_pred CCCHHHHHHHHHHHHHHhcC--hhhHHHHHHHhccCCCChhHHHHHHHHHHhhhh-----------cCCCCCChhhHHHH
Q 002148 17 HPDDAVRMQADRWLQDFQHT--IDAWQVADNLLHDATSNLETLIFCSQTLRSKVQ-----------RDVEELPSEAVRGL 83 (959)
Q Consensus 17 ~~d~~~r~~A~~~L~~~q~s--~~aw~~~~~lL~~~~~~~~~~~faa~~L~~ki~-----------~~w~~l~~~~~~~l 83 (959)
+||+..|+.|+++|.+++.+ +......-+.|.++..++..|..|..+||+-+. .+|.+++.|.++.+
T Consensus 12 SpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~reqV 91 (859)
T KOG1241|consen 12 SPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEIREQV 91 (859)
T ss_pred CCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHHHHHH
Confidence 67999999999999999976 444555677777767888999999999999663 34999999999999
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhc-cccccCCccchHHHHHhcCCCCCc--hhhHHHHhcccccccccccc
Q 002148 84 QDSLNTLLKKFHKGPPKVRTQISIAVAALAVHI-SAEDWGGGGIVNWLRDEMNSHPEF--VPGFLELLTVLPEEVFNYKI 160 (959)
Q Consensus 84 r~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~-~~~~Wp~~~~~~~l~~~l~~~~~~--~~~~L~~L~~l~EE~~~~~~ 160 (959)
|+.++..|.. ..+...+--++++|.++... +.+.||+ ++..+.+..+..++. ....|+.+..++|++...
T Consensus 92 K~~il~tL~~---~ep~~~s~Aaq~va~IA~~ElP~n~wp~--li~~lv~nv~~~~~~~~k~~slealGyice~i~pe-- 164 (859)
T KOG1241|consen 92 KNNILRTLGS---PEPRRPSSAAQCVAAIACIELPQNQWPE--LIVTLVSNVGEEQASMVKESSLEALGYICEDIDPE-- 164 (859)
T ss_pred HHHHHHHcCC---CCCCccchHHHHHHHHHHhhCchhhCHH--HHHHHHHhcccccchHHHHHHHHHHHHHHccCCHH--
Confidence 9999999975 22344555778888887755 4579999 999999888765442 367899999999987531
Q ss_pred cCChhHHHHHHHHHHHhHHHHHHHHHHhhhhh----HhHHHHHHHHHHHHhccCCCCCcccccchhHHHHHhcCCCCchH
Q 002148 161 AARPERRRQFEKELTSQMEVALSTLTACLHIN----ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILS 236 (959)
Q Consensus 161 ~l~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~----~~~~~~l~~~~sWi~~~~~~~~~~~~~~~ll~~~~~~L~~~~~~ 236 (959)
.+....+.++.-+.+.+..+ .++..+++|+..-+.+.
T Consensus 165 ------------vl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~--------------------------- 205 (859)
T KOG1241|consen 165 ------------VLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFT--------------------------- 205 (859)
T ss_pred ------------HHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHH---------------------------
Confidence 24455566655444444432 35666666665444431
Q ss_pred HHHHHHHHHHHhhhccCCCCCCCCchhHH-HHHHHHHHhhHHHhhhcCCCHHHHHHHHHHHHHhhhHHHHHHhcCCchH-
Q 002148 237 EASVNVISELIHYSAAGSSGGATVNMPLI-QVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDES- 314 (959)
Q Consensus 237 ~~a~~~l~~ii~~~~~~~~~~~~~~~~~~-~~l~~~v~~l~~~l~~~~~d~e~~~~l~~l~~~~~~~~~~~l~~~~~~~- 314 (959)
.....++ ...+++ +.++. .....|++.......+++.+..-|...+. +..
T Consensus 206 --------------~~nF~~E--~ern~iMqvvcE---------atq~~d~~i~~aa~~ClvkIm~LyY~~m~---~yM~ 257 (859)
T KOG1241|consen 206 --------------KANFNNE--MERNYIMQVVCE---------ATQSPDEEIQVAAFQCLVKIMSLYYEFME---PYME 257 (859)
T ss_pred --------------HHhhccH--hhhceeeeeeee---------cccCCcHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 1111011 111222 11111 01234555555555666666666766663 122
Q ss_pred HHHHHHHHhhccCCCcchhhhhHHhHHHhHHHHhhcccccccCcccchHHHHHHHHhhhHHHHHHHHHHHHhhccCC-CC
Q 002148 315 MLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYP-QD 393 (959)
Q Consensus 315 ~~~l~~ll~~~~~~~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p-~d 393 (959)
..++..-+.-+..++++|+.+++|||..+.+.-.+.. ...++.+..+.. +......+.-+.-+++++++.+..- ++
T Consensus 258 ~alfaitl~amks~~deValQaiEFWsticeEEiD~~--~e~~e~~d~~~~-p~~~~fa~~a~~~v~P~Ll~~L~kqde~ 334 (859)
T KOG1241|consen 258 QALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLA--IEYGEAVDQGLP-PSSKYFARQALQDVVPVLLELLTKQDED 334 (859)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhcCCC-chhhHHHHHHHhHhhHHHHHHHHhCCCC
Confidence 3477777777778899999999999998876643210 000000000000 0011222334445666666666552 22
Q ss_pred --CCCCChhhhHHHHHHHHHhhHHHHHhhhccChHHHHHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHhhcccCCcc
Q 002148 394 --YQDLSLEDLKEFKHTRYAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVE 471 (959)
Q Consensus 394 --~~~~~~d~~~~f~~~R~~~~d~l~~~~~il~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~l~e~~~~~~ 471 (959)
.|+|+ --+..|-+|+-.+...| |+++.++.+.+.+.+. +++|+.+|++..++|++-++-....
T Consensus 335 ~d~DdWn---------p~kAAg~CL~l~A~~~~-D~Iv~~Vl~Fiee~i~-----~pdwr~reaavmAFGSIl~gp~~~~ 399 (859)
T KOG1241|consen 335 DDDDDWN---------PAKAAGVCLMLFAQCVG-DDIVPHVLPFIEENIQ-----NPDWRNREAAVMAFGSILEGPEPDK 399 (859)
T ss_pred cccccCc---------HHHHHHHHHHHHHHHhc-ccchhhhHHHHHHhcC-----CcchhhhhHHHHHHHhhhcCCchhh
Confidence 12232 34566777877777778 6788988888888753 5899999999999999988765442
Q ss_pred -----ccchHHHhhhccCCCCcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 002148 472 -----AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICD 546 (959)
Q Consensus 472 -----~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~~v~~~A~~al~~lc~ 546 (959)
...+|.++.... .+.-.++.|+-|++||.++++..--....++.+++..+..|+++..++...+|.||..|++
T Consensus 400 Lt~iV~qalp~ii~lm~--D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Lae 477 (859)
T KOG1241|consen 400 LTPIVIQALPSIINLMS--DPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFISLAE 477 (859)
T ss_pred hhHHHhhhhHHHHHHhc--CchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHH
Confidence 122333333322 1234578999999999999887521112588999999999998644499999999999999
Q ss_pred Hhhhhh---------hCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHH
Q 002148 547 DCRKKL---------CGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEI 617 (959)
Q Consensus 547 ~c~~~L---------~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~ 617 (959)
.|.... .|+.+.|++.+.....+.+ .-...-|...|+|++-+|..-| +...+.+..+..-++.+|.+.
T Consensus 478 a~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~d--gnqsNLR~AAYeALmElIk~st-~~vy~~v~~~~l~il~kl~q~ 554 (859)
T KOG1241|consen 478 AAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRAD--GNQSNLRSAAYEALMELIKNST-DDVYPMVQKLTLVILEKLDQT 554 (859)
T ss_pred HHHHhccCCCCCCccchhHHHHHHHHHhhccccc--cchhhHHHHHHHHHHHHHHcCc-HHHHHHHHHHHHHHHHHHHHH
Confidence 886432 2566777777666655421 1245678899999999998865 456677888889999999999
Q ss_pred HhcCCCcc-cccCchhhhH-HHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhhhh
Q 002148 618 INQGPEIL-QKKHPRDLTV-HIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRF 695 (959)
Q Consensus 618 ~~~~~~~~-~~~~~~~~~~-~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~~~~~~~~ 695 (959)
++....+. ++....++.. ...+|+.+.|.+.. ...++-.++|..+.++++. ..+..+.|.+...+...+..+|+.
T Consensus 555 i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~--~~~~~~d~iM~lflri~~s-~~s~~v~e~a~laV~tl~~~Lg~~ 631 (859)
T KOG1241|consen 555 ISSQILSLADRAQLNELQSLLCNTLQSIIRKVGS--DIREVSDQIMGLFLRIFES-KRSAVVHEEAFLAVSTLAESLGKG 631 (859)
T ss_pred HHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccc--cchhHHHHHHHHHHHHHcC-CccccchHHHHHHHHHHHHHHhHh
Confidence 98332221 1111222322 23677777776653 4556667889998888887 556667888899999899999999
Q ss_pred hhhhHHHHHHHHHHHHhhcC----CcchhHhHHHHHHHhCCC
Q 002148 696 MGITIGAILEEIQGLYQQHQ----QPCFLYLSSEVIKIFGSD 733 (959)
Q Consensus 696 ~~~~l~~l~~~l~~~~~~~~----~~~~L~l~~~li~~~~~~ 733 (959)
+..++|.+..++..+.++.. ......+.+.+....+.+
T Consensus 632 F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~ 673 (859)
T KOG1241|consen 632 FAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDD 673 (859)
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999988775422 123355555555555544
No 10
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.92 E-value=6.4e-19 Score=185.91 Aligned_cols=667 Identities=14% Similarity=0.127 Sum_probs=396.0
Q ss_pred CCCHHHHHHHHHHHHHHhcChhh--HHHHHHHhccCCCChhHHHHHHHHHHhhhhc-----------CCCCCChhhHHHH
Q 002148 17 HPDDAVRMQADRWLQDFQHTIDA--WQVADNLLHDATSNLETLIFCSQTLRSKVQR-----------DVEELPSEAVRGL 83 (959)
Q Consensus 17 ~~d~~~r~~A~~~L~~~q~s~~a--w~~~~~lL~~~~~~~~~~~faa~~L~~ki~~-----------~w~~l~~~~~~~l 83 (959)
+||++.|..|+..|.+.++.+-. -.+..+.|-+.+..++.|..|+.+|++-+.. +|-.++.|.++.+
T Consensus 16 spD~n~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~qv 95 (858)
T COG5215 16 SPDPNARLRAEAQLLELQSGDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQV 95 (858)
T ss_pred CCCCCccccHHHHHHHhccccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHHH
Confidence 67999999999999999976433 2234555555578889999999999997643 4999999999999
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhc-cccccCCccchHHHHHhcCCCCC--chhhHHHHhcccccccccccc
Q 002148 84 QDSLNTLLKKFHKGPPKVRTQISIAVAALAVHI-SAEDWGGGGIVNWLRDEMNSHPE--FVPGFLELLTVLPEEVFNYKI 160 (959)
Q Consensus 84 r~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~-~~~~Wp~~~~~~~l~~~l~~~~~--~~~~~L~~L~~l~EE~~~~~~ 160 (959)
|...+..|.. ..+.+-+--++.+|.++... +...||+ ++..+....+..++ ...-.+.++...+|-....
T Consensus 96 K~~al~aL~s---~epr~~~~Aaql~aaIA~~Elp~~~wp~--lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe-- 168 (858)
T COG5215 96 KGMALRALKS---PEPRFCTMAAQLLAAIARMELPNSLWPG--LMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPE-- 168 (858)
T ss_pred HHHHHHHhcC---CccHHHHHHHHHHHHHHHhhCccccchH--HHHHHHHhccccCchHhHHHHHHHHHHHhhccCHH--
Confidence 9999999876 23344555677777777654 3468998 99998887765432 2234566666666543211
Q ss_pred cCChhHHHHHHHHHHHhHH-HHHHHHHHhhhhh---HhHHHHHHHHHHHHhccCCCCCcccccchhHHHHHhcCCCCchH
Q 002148 161 AARPERRRQFEKELTSQME-VALSTLTACLHIN---ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILS 236 (959)
Q Consensus 161 ~l~~~~r~~l~~~l~~~~~-~vl~~l~~~l~~~---~~~~~~l~~~~sWi~~~~~~~~~~~~~~~ll~~~~~~L~~~~~~ 236 (959)
.+.+... .++.++...+..+ .++..+|+|+-.-+.+..+
T Consensus 169 ------------~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~------------------------- 211 (858)
T COG5215 169 ------------DLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQG------------------------- 211 (858)
T ss_pred ------------HHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHH-------------------------
Confidence 1222222 3344555444432 4788889998653222100
Q ss_pred HHHHHHHHHHHhhhccCCCCCCCCchhHH-HHHHHHHHhhHHHhhhcCCCHHHHHHHHHHHHHhhhHHHHHHhcCCchH-
Q 002148 237 EASVNVISELIHYSAAGSSGGATVNMPLI-QVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDES- 314 (959)
Q Consensus 237 ~~a~~~l~~ii~~~~~~~~~~~~~~~~~~-~~l~~~v~~l~~~l~~~~~d~e~~~~l~~l~~~~~~~~~~~l~~~~~~~- 314 (959)
.+... ...+++ +..+.. ....|++..+...-+++.+..-|.+++. ...
T Consensus 212 ---------nf~~E---------~erNy~mqvvcea---------tq~~d~e~q~aafgCl~kim~LyY~fm~---~ymE 261 (858)
T COG5215 212 ---------NFCYE---------EERNYFMQVVCEA---------TQGNDEELQHAAFGCLNKIMMLYYKFMQ---SYME 261 (858)
T ss_pred ---------hhcch---------hhhchhheeeehh---------ccCCcHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 00000 111222 111110 1123444444444445555444554442 111
Q ss_pred HHHHHHHHhhccCCCcchhhhhHHhHHHhHHHHhhcc---cccccCcccchHHHHHHHHhhhHHHHHHHHHHHHhhccCC
Q 002148 315 MLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRD---SYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYP 391 (959)
Q Consensus 315 ~~~l~~ll~~~~~~~~~v~~~~l~fW~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p 391 (959)
..+..+..+.+..++++|..++++||+...+.-.+.+ +|. ...|..+ ..-.....++++..|++.+.++ .
T Consensus 262 ~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~--pe~p~qn--~~fa~aav~dvlP~lL~LL~~q---~ 334 (858)
T COG5215 262 NALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYL--PEVPAQN--HGFARAAVADVLPELLSLLEKQ---G 334 (858)
T ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhc--ccCchhh--cchHHHHHHHHHHHHHHHHHhc---C
Confidence 2355666677778899999999999988776533211 111 1111100 0011233455666666655442 2
Q ss_pred CCC--CCCChhhhHHHHHHHHHhhHHHHHhhhccChHHHHHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHhhcccCC
Q 002148 392 QDY--QDLSLEDLKEFKHTRYAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSV 469 (959)
Q Consensus 392 ~d~--~~~~~d~~~~f~~~R~~~~d~l~~~~~il~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~l~e~~~~ 469 (959)
+|+ ++|+. -...+.+++--+...| +.++..+...+.+.+ . +.+|+.+|++..++|++-++-..
T Consensus 335 ed~~~DdWn~---------smaA~sCLqlfaq~~g-d~i~~pVl~FvEqni----~-~~~w~nreaavmAfGSvm~gp~~ 399 (858)
T COG5215 335 EDYYGDDWNP---------SMAASSCLQLFAQLKG-DKIMRPVLGFVEQNI----R-SESWANREAAVMAFGSVMHGPCE 399 (858)
T ss_pred CCccccccch---------hhhHHHHHHHHHHHhh-hHhHHHHHHHHHHhc----c-CchhhhHHHHHHHhhhhhcCccH
Confidence 222 34542 1233444544444445 556655555555543 2 57899999999999998776543
Q ss_pred cc-ccchHHHhhhccCCCCc--HHHHHHHHHHHHhhhhHHhh--CCCChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 002148 470 VE-AEVMPQVMALLPKLPQQ--PQLLQTVCLTIGAYSKWFDA--ASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHI 544 (959)
Q Consensus 470 ~~-~~~l~~l~~~l~~lp~~--~~v~~t~~~~ig~y~~~l~~--~p~~~~~l~~~l~~l~~~l~~~~~v~~~A~~al~~l 544 (959)
.. ...+++.+..+...-++ -.+..|+.|++|+.+++++. +|.+ .++...+..+.|+.+...+...++.++..|
T Consensus 400 ~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~--Hl~~~vsa~liGl~D~p~~~~ncsw~~~nl 477 (858)
T COG5215 400 DCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCG--HLVLEVSASLIGLMDCPFRSINCSWRKENL 477 (858)
T ss_pred HHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccc--cccHHHHHHHhhhhccchHHhhhHHHHHhH
Confidence 32 23445555544443223 35889999999999999876 5664 678888888888766444889999999999
Q ss_pred HHHhhh-------hhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHH
Q 002148 545 CDDCRK-------KLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEI 617 (959)
Q Consensus 545 c~~c~~-------~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~ 617 (959)
++.-.+ .+.++-+.|++.+....+.. .-....|..+++++|.+|.--| +...+.+..+.+-...++.++
T Consensus 478 v~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~---~Ne~n~R~s~fsaLgtli~~~~-d~V~~~~a~~~~~~~~kl~~~ 553 (858)
T COG5215 478 VDHIAKAVREVESFLAKFYLAILNALVKGTELA---LNESNLRVSLFSALGTLILICP-DAVSDILAGFYDYTSKKLDEC 553 (858)
T ss_pred HHhhhhhhccccchhHHHHHHHHHHHHHHHHhh---ccchhHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHHH
Confidence 876543 23455555665554443321 1246678999999999998765 344566777788888888888
Q ss_pred HhcCCCc---ccccCchhh-hHHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhh
Q 002148 618 INQGPEI---LQKKHPRDL-TVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSK 693 (959)
Q Consensus 618 ~~~~~~~---~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~~~~~~ 693 (959)
++-.... .++....++ ...++.|.+++|.... .+-++-.+++.++-.+++.- +...+.+.+...++.+..+++
T Consensus 554 isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~--~ie~v~D~lm~Lf~r~les~-~~t~~~~dV~~aIsal~~sl~ 630 (858)
T COG5215 554 ISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRR--DIEDVEDQLMELFIRILEST-KPTTAFGDVYTAISALSTSLE 630 (858)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCC--CcccHHHHHHHHHHHHHhcc-CCchhhhHHHHHHHHHHHHHH
Confidence 7643211 111111222 1245677777775432 12233357788888877764 333456677888888888899
Q ss_pred hhhhhhHHHHHHHHHHHHhhcC---CcchhHhHHHHHHHhCCCccchHHHHHHHHHHHHHHHHhhcCcccCCCCCCcHHH
Q 002148 694 RFMGITIGAILEEIQGLYQQHQ---QPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADD 770 (959)
Q Consensus 694 ~~~~~~l~~l~~~l~~~~~~~~---~~~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pDl~~~ 770 (959)
+.+..+++.++.++........ ....+.+.+.+....|.+ +...... +.....+.+++ ...|-|+...
T Consensus 631 e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~d--f~~y~d~----~ms~LvQ~lss---~~~~R~lKPa 701 (858)
T COG5215 631 ERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTD--FNIYADV----LMSSLVQCLSS---EATHRDLKPA 701 (858)
T ss_pred HHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhh--HHHHHHH----HHHHHHHHhcC---hhhccccchH
Confidence 9999999999999888775422 133456666666666655 2222222 22233344442 3345566666
Q ss_pred HHHHHHHHHhhCCCcccCcCChHHHHHHH
Q 002148 771 CFLLASRCIRYCPQLFIPSSVFPSLVDCS 799 (959)
Q Consensus 771 ~f~l~~~~~~~~p~~~l~s~~l~~~~~~~ 799 (959)
.+..++.+...-..-|.+ +++.++-+.
T Consensus 702 iLSvFgDIAlaiga~F~~--YL~~im~L~ 728 (858)
T COG5215 702 ILSVFGDIALAIGANFES--YLDMIMMLF 728 (858)
T ss_pred HHHHHHHHHHHHhhhHHH--HHHHHHHHH
Confidence 666666665433322222 444444443
No 11
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=8.9e-19 Score=192.90 Aligned_cols=661 Identities=14% Similarity=0.169 Sum_probs=372.0
Q ss_pred chHHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcChhhHHHHHHHhccCCCChhHHHHHHHHHHhhhhcCCC-------C
Q 002148 2 ELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVE-------E 74 (959)
Q Consensus 2 ~~~~~v~~av~~l~~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~~~faa~~L~~ki~~~w~-------~ 74 (959)
+-.+++-+.+..-. .|||+.|+-|++.|++.+..+.---...+|+.++..+.++|.-||..+|+.|+++|. .
T Consensus 2 ~~le~l~~~l~qTl-~pdps~rk~aEr~L~~~e~q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~ 80 (960)
T KOG1992|consen 2 ANLETLANYLLQTL-SPDPSVRKPAERALRSLEGQQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIK 80 (960)
T ss_pred ccHHHHHHHHHhcC-CCCCccCchHHHHHHHhccCCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccc
Confidence 33455666655543 568999999999999999775555566888887677899999999999999999995 4
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCC-CchhhHHHHhccccc
Q 002148 75 LPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHP-EFVPGFLELLTVLPE 153 (959)
Q Consensus 75 l~~~~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~l~~~~-~~~~~~L~~L~~l~E 153 (959)
+.+++++.+|..++.++.+ .|..|..+|..++..++.+..|+.||+ ++++++..++++. +.....|..-..+
T Consensus 81 i~~~~~e~ikslIv~lMl~---s~~~iQ~qlseal~~Ig~~DFP~kWpt--Ll~dL~~~ls~~D~~~~~gVL~tahsi-- 153 (960)
T KOG1992|consen 81 IIEEDREQIKSLIVTLMLS---SPFNIQKQLSEALSLIGKRDFPDKWPT--LLPDLVARLSSGDFNVINGVLVTAHSI-- 153 (960)
T ss_pred cchhHHHHHHHHHHHHHhc---CcHHHHHHHHHHHHHHhccccchhhHH--HHHHHHhhccccchHHHHHHHHHHHHH--
Confidence 5667899999999998887 678899999999999999999999999 9999999998654 1122223222211
Q ss_pred ccccccccC-ChhHHHHHHHHHHHhHHHHHHHHHHhhhhhHhHHHHHHHHHHHHhccCCCCCcccccchhHHHHHhcCCC
Q 002148 154 EVFNYKIAA-RPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHS 232 (959)
Q Consensus 154 E~~~~~~~l-~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~~~~~~~l~~~~sWi~~~~~~~~~~~~~~~ll~~~~~~L~~ 232 (959)
+...+.-. +.+--.+++..+.....-...++.+..+-.+....-=..++.|.+.. -++..+|..|+.
T Consensus 154 -Fkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vl-----------ll~~klfysLn~ 221 (960)
T KOG1992|consen 154 -FKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVL-----------LLICKLFYSLNF 221 (960)
T ss_pred -HHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHH-----------HHHHHHHHhhhc
Confidence 11111100 11111223333333333333333332221100000001334444320 133445555543
Q ss_pred C---chHH----HHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhhhcCCCHHHHHHHHHHHHHhhhHHHH
Q 002148 233 E---ILSE----ASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVE 305 (959)
Q Consensus 233 ~---~~~~----~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~l~~~~~d~e~~~~l~~l~~~~~~~~~~ 305 (959)
+ +.|+ .++..+...++...+...+| ++...++. +.-..+|.++.-+.+.|-.
T Consensus 222 QDiPEFFEdnm~~wM~~F~k~l~~~~p~le~~-~ee~~~l~--------------------~lka~ICEi~~LY~~kYeE 280 (960)
T KOG1992|consen 222 QDIPEFFEDNMKTWMGAFHKLLTYDNPLLESD-EEEATVLD--------------------KLKAQICEIFNLYATKYEE 280 (960)
T ss_pred ccchHHHHhhHHHHHHHHHHHHhccCcccccC-cccccHHH--------------------HHHHHHHHHHHHHHHhhHH
Confidence 3 2232 23333333333221110000 01111110 1223566666655555543
Q ss_pred HHhcCCch-HHHHHHHHHhhccCC-CcchhhhhHHhHHHhHHHHhhcccccccCcccchHHHHHHHHhhhHHHH--HHHH
Q 002148 306 LIATGSDE-SMLIVHALLEVASHP-EYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAY--ESLV 381 (959)
Q Consensus 306 ~l~~~~~~-~~~~l~~ll~~~~~~-~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Ll 381 (959)
-+..=-++ +....+++...+.++ .|-....++.|..++.+. ..| ..+| .+.+
T Consensus 281 ef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r----~~y--------------------~~~F~~~~vl 336 (960)
T KOG1992|consen 281 EFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRR----PHY--------------------AELFEGENVL 336 (960)
T ss_pred HHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhh----hhh--------------------HhhhcchHHH
Confidence 33210011 122334444444455 455667788887655432 112 2222 2455
Q ss_pred HHHHhhccCCCC-----CCCCChhhhH----------HHHHHHHHhhHHHHHhhhccChHHHHHHHHHHHHHhhhh-cCC
Q 002148 382 SLVSFRVQYPQD-----YQDLSLEDLK----------EFKHTRYAVADVLIDAASVLGGDATLKILYIKFVEGVAC-CGN 445 (959)
Q Consensus 382 ~~l~~k~~~p~d-----~~~~~~d~~~----------~f~~~R~~~~d~l~~~~~il~~~~~l~~l~~~l~~~~~~-~~~ 445 (959)
..+++++..|.- .++.-+|+-. |-...|+.+.|+++..+.... ..+...+...++..+.+ +.+
T Consensus 337 ~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe-~~vt~v~~~~v~~~l~~y~~n 415 (960)
T KOG1992|consen 337 AQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFE-GQVTGVFSSEVQRLLDQYSKN 415 (960)
T ss_pred HHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHHHHhccC
Confidence 566667777741 1111011111 223346777899988887664 34555554444444332 234
Q ss_pred CCCCcchhhHHHHHHHHhhcccCCcc------ccc-------hHHHhhhccC--CCCcHHHHHHHHHHHHhhhhHHhhCC
Q 002148 446 KHNEWRPAEAALFCIRAISTYVSVVE------AEV-------MPQVMALLPK--LPQQPQLLQTVCLTIGAYSKWFDAAS 510 (959)
Q Consensus 446 ~~~~w~~~Ea~l~~l~~l~e~~~~~~------~~~-------l~~l~~~l~~--lp~~~~v~~t~~~~ig~y~~~l~~~p 510 (959)
++.+|...+.++|.+.+++-...... ++. ..+++..|.+ .-+||.++..++..+.-+ .+++
T Consensus 416 PS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~F----R~ql 491 (960)
T KOG1992|consen 416 PSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTF----RNQL 491 (960)
T ss_pred CCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeee----cccC
Confidence 57899999999999999976533211 111 1222233322 224888888887655443 2332
Q ss_pred CChhhHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhh---------hhhCCHHHHHHHHHHHhhccCCCCCCHhhH
Q 002148 511 SDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRK---------KLCGYLDGLYNVYRTAVNGEGSLKVSAEDS 580 (959)
Q Consensus 511 ~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~lc~~c~~---------~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~ 580 (959)
. ...+...++.+.+++..+. -|..-||+++.++-.-|.+ .+.||+..+++.+...++.|+ ..+-
T Consensus 492 ~-~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~-----~~En 565 (960)
T KOG1992|consen 492 G-KEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPG-----KAEN 565 (960)
T ss_pred C-hHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCc-----cccc
Confidence 2 2367777777878776542 3888999999998654433 466888888877777665542 2566
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCC--cccHHHHHH
Q 002148 581 LHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNH--PEAVADAIQ 658 (959)
Q Consensus 581 ~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--~~~~~~~~~ 658 (959)
.+++++|-++++..++ ...++ ..+++.++.+++.....++.+....+ ...+.++.+++.... |..+..+..
T Consensus 566 eylmKaImRii~i~~~-~i~p~----~~~~l~~Lteiv~~v~KNPs~P~fnH--YLFEsi~~li~~t~~~~~~~vs~~e~ 638 (960)
T KOG1992|consen 566 EYLMKAIMRIISILQS-AIIPH----APELLRQLTEIVEEVSKNPSNPQFNH--YLFESIGLLIRKTCKANPSAVSSLEE 638 (960)
T ss_pred HHHHHHHHHHHHhCHH-hhhhh----hhHHHHHHHHHHHHHhcCCCCchhHH--HHHHHHHHHHHHHhccCchHHHHHHH
Confidence 8999999999988653 22233 34444444444443332222222333 357899999988764 445666778
Q ss_pred HHhHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCCcchhHhHHHHHHHhCCCccchH
Q 002148 659 RLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCAS 738 (959)
Q Consensus 659 ~~~~~l~~il~~~~~~~~i~e~~~~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~~~~~~~~~~ 738 (959)
.++|++..++.. +| ..++|.. +.+++.+++.-+.. ..+
T Consensus 639 aL~p~fq~Il~e-----DI-------------------~EfiPYv----------------fQlla~lve~~~~~--ip~ 676 (960)
T KOG1992|consen 639 ALFPVFQTILSE-----DI-------------------QEFIPYV----------------FQLLAVLVEHSSGT--IPD 676 (960)
T ss_pred HHHHHHHHHHHH-----HH-------------------HHHHHHH----------------HHHHHHHHHhcCCC--Cch
Confidence 888888777643 22 2223322 23344455544431 333
Q ss_pred HHHHHHHHHHHHHHHhhcCcccCCCCCCcHHHHHHHHHHHHhhCCCcccCcCChHHHH
Q 002148 739 YLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLV 796 (959)
Q Consensus 739 ~l~~~~~~l~~~~~~~l~~~~~~~~~pDl~~~~f~l~~~~~~~~p~~~l~s~~l~~~~ 796 (959)
.+..++..+.+. ...+....+-+..+++..++++.|..+...+.+..++
T Consensus 677 ~~~~l~~~lLsp---------~lW~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iL 725 (960)
T KOG1992|consen 677 SYSPLFPPLLSP---------NLWKRSGNIPALVRLLQAFLKTGSQIVEAADKLSGIL 725 (960)
T ss_pred hHHHHHHHhcCH---------HHHhhcCCcHHHHHHHHHHHhcCchhhcccccchhHH
Confidence 343433333322 2344556778899999999999998876433334333
No 12
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=2.5e-13 Score=146.43 Aligned_cols=782 Identities=13% Similarity=0.136 Sum_probs=407.7
Q ss_pred CchHHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcChhhHHHHHHHhccCCCChhHHHHHHHHHHhhhhcCCCCCChhhH
Q 002148 1 MELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAV 80 (959)
Q Consensus 1 ~~~~~~v~~av~~l~~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~~~faa~~L~~ki~~~w~~l~~~~~ 80 (959)
|++.++++..-..+|.+.|+..|.+|++-|.+|-.+|++.+-|.-||.+ +..+..+..|+..|-+.+..+- .+|-+++
T Consensus 1 m~sLaqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~speclskCqlll~~-gs~pYs~mlAst~L~Klvs~~t-~lpl~qr 78 (1082)
T KOG1410|consen 1 MQSLAQLESLCKDLYESTDPTARHRAEKALAELSESPECLSKCQLLLER-GSYPYSQMLASTCLMKLVSRKT-PLPLEQR 78 (1082)
T ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHcCCC-CCcHHHH
Confidence 7899999999999999999999999999999999999999999999987 5566789999999987776553 7999999
Q ss_pred HHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHhhccccccCC----ccchHHHHHhcCCC-CCchhhHHHHhcccccc
Q 002148 81 RGLQDSLNTLLKKFH-KGPPKVRTQISIAVAALAVHISAEDWGG----GGIVNWLRDEMNSH-PEFVPGFLELLTVLPEE 154 (959)
Q Consensus 81 ~~lr~~Ll~~l~~~~-~~~~~v~~kL~~~la~l~~~~~~~~Wp~----~~~~~~l~~~l~~~-~~~~~~~L~~L~~l~EE 154 (959)
..||+++++++.... .-+++|...|++.+|.+-+..|.+.=.+ .+++.++...++.+ .+.+.+++.+|..|..|
T Consensus 79 ldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqLvqe 158 (1082)
T KOG1410|consen 79 LDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQLVQE 158 (1082)
T ss_pred HHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHHHHH
Confidence 999999999998842 2256899999999999998653211111 14677777777655 45678899999999999
Q ss_pred cccccccCChhHHHHHHHHHHHh-HHHHHHHHHHhhhh--------h-------HhHHHHHHHHHH-HHhccCC------
Q 002148 155 VFNYKIAARPERRRQFEKELTSQ-MEVALSTLTACLHI--------N-------ELKEQVLEAFAS-WLRLKHR------ 211 (959)
Q Consensus 155 ~~~~~~~l~~~~r~~l~~~l~~~-~~~vl~~l~~~l~~--------~-------~~~~~~l~~~~s-Wi~~~~~------ 211 (959)
....+...+..+++++-..+++. .-+|+.+--+.+.. . .+.+.+++|+.- +|.-...
T Consensus 159 mN~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGss~DEssed~ 238 (1082)
T KOG1410|consen 159 MNQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGSSTDESSEDL 238 (1082)
T ss_pred hhCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhccccccccccccccccc
Confidence 97655433323333332222222 22344332222221 1 356777888762 3321111
Q ss_pred ----CCCc---ccccchhHHHHHhcCCC--CchHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhhhc
Q 002148 212 ----IPGS---VLASHPLVLTALSSLHS--EILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDS 282 (959)
Q Consensus 212 ----~~~~---~~~~~~ll~~~~~~L~~--~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~l~~~ 282 (959)
+|.+ .+..+..+++.|+..++ |++.+.|++|++.+.+-.+... ...++.++++.++.++-.+.+. ..+
T Consensus 239 ctVQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLF--N~aeRa~yl~~Lv~Gvk~il~n-p~~ 315 (1082)
T KOG1410|consen 239 CTVQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLF--NGAERAKYLQHLVEGVKRILEN-PQG 315 (1082)
T ss_pred cceecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHhC-CcC
Confidence 2211 12245677888877664 5788999999999998665433 1234567888888776443221 123
Q ss_pred CCCHHHHHHHHHHHHHhhhHHH-HHHhcCCchHHHHHHHHHhhcc----CC--CcchhhhhHHhHHHhHHHHhhcccccc
Q 002148 283 SKDEEDVKAIARLFADMGDSYV-ELIATGSDESMLIVHALLEVAS----HP--EYDIASMTFNFWHSLQVILTKRDSYIS 355 (959)
Q Consensus 283 ~~d~e~~~~l~~l~~~~~~~~~-~~l~~~~~~~~~~l~~ll~~~~----~~--~~~v~~~~l~fW~~l~~~~~~~~~~~~ 355 (959)
-.|.+.++.+||++..+-.+|- .-++.- +...+.+.++-.++- |= ...-....+.+|.++..... |..
T Consensus 316 LsD~~nyHeFCRllaRlktNYQL~ELv~v-~~Y~e~irLiAeFTv~SLq~wefa~nSvyyLlt~WqRmvaSVP----yvk 390 (1082)
T KOG1410|consen 316 LSDPANYHEFCRLLARLKTNYQLGELVKV-ECYPEVIRLIAEFTVTSLQHWEFAPNSVYYLLTLWQRMVASVP----YVK 390 (1082)
T ss_pred CCCcchHHHHHHHHHHHHhhhhhHhhhcc-CCcHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhcCC----ccc
Confidence 4466788899999988766552 112221 122233333333322 21 12233566889998876542 221
Q ss_pred cCcccchHHHHHHHHhhhHHHHHHHHHHHH----hhc--cCCCCCCCCChhhhHHHHHHHHHhhHHHHHhhhccChH---
Q 002148 356 FGNEASAEAERSRRLQVFRSAYESLVSLVS----FRV--QYPQDYQDLSLEDLKEFKHTRYAVADVLIDAASVLGGD--- 426 (959)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~----~k~--~~p~d~~~~~~d~~~~f~~~R~~~~d~l~~~~~il~~~--- 426 (959)
+.+| .....|.| ++..+.+ ..+ ..|++.++ .-|+...- .+.-|.+-.+|..--..
T Consensus 391 -~~~p-------hlLd~y~P---eIt~afi~SRl~sV~~ivrd~~d~-PLdd~~~~----~q~le~l~~icRceYEkTc~ 454 (1082)
T KOG1410|consen 391 -NTEP-------HLLDTYCP---EITKAFITSRLQSVEIIVRDGLDD-PLDDTGAV----QQQLEQLATICRCEYEKTCA 454 (1082)
T ss_pred -CCCh-------HHHhhhcH---HHHHHHHHHHhhhhheecccCCCC-cchhhHHH----HHHHHHhhhhhhhhHhhHHH
Confidence 1222 12233333 2222211 111 12333221 11111111 11112222222211100
Q ss_pred ---HHHHHHHHHHHHhhhhcCCCCCCcchhhHHH----HHHHHhhcc-cC---Ccc-----ccchHHHhhhcc----CCC
Q 002148 427 ---ATLKILYIKFVEGVACCGNKHNEWRPAEAAL----FCIRAISTY-VS---VVE-----AEVMPQVMALLP----KLP 486 (959)
Q Consensus 427 ---~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l----~~l~~l~e~-~~---~~~-----~~~l~~l~~~l~----~lp 486 (959)
..++...+..++...+...++.+-.-.|+-| |.++++-.+ ++ .++ .+...++++.+. .+|
T Consensus 455 llvq~fdq~aqsyqe~~~~~s~~~~d~ai~EgrL~Wlv~lvgtvV~gk~t~~Std~~d~mDgEL~arvlql~nlmdsr~~ 534 (1082)
T KOG1410|consen 455 LLVQLFDQNAQSYQELLQNGSANDADIAIQEGRLVWLVYLVGTVVGGKTTATSTDEHDAMDGELSARVLQLVNLMDSRLP 534 (1082)
T ss_pred HHHHHHhhhHHHHHHHhcccCCCchhHHHHhhhhhhhHHHhHHHhcceecccccchhhhhhhHHHHHHHHHHHhhhcccc
Confidence 1122222222222211111133333445533 444444222 11 111 134455555432 344
Q ss_pred C--cHHHHHHHHHHHHhhhh-------------------HHhhCCCChhhHHHHHHHHHhccC---CCHHHHHHHHHHHH
Q 002148 487 Q--QPQLLQTVCLTIGAYSK-------------------WFDAASSDPSILASVLSILTSGMS---TSEDTAAAAALAFR 542 (959)
Q Consensus 487 ~--~~~v~~t~~~~ig~y~~-------------------~l~~~p~~~~~l~~~l~~l~~~l~---~~~~v~~~A~~al~ 542 (959)
. +.++-.+.+..+.+|-+ -+.-+-+ ...|..++..+...+. ..+++....-..|.
T Consensus 535 ~~~n~rle~ail~f~eqFRk~YvgDQ~~rsSkvY~rl~e~Lgi~de-~~~L~viv~KI~TNLK~w~~~e~vi~~tLslf~ 613 (1082)
T KOG1410|consen 535 LKGNERLELAILHFLEQFRKAYVGDQIQRSSKVYARLSEVLGITDE-SDVLGVIVGKILTNLKYWGRNEPVISLTLSLFN 613 (1082)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch-HHHHHHHHHHHHhhcccccCCchHHHHHHHHHH
Confidence 2 44555555554444432 2222211 1255556666655443 33346666666665
Q ss_pred HHHHHhh--hhhh--CCHHHHHHHH-H---HHhhccCCCCC-CHhhHHHHHHHHHHHHhc-CChHHHHHHHHHhhhhhHH
Q 002148 543 HICDDCR--KKLC--GYLDGLYNVY-R---TAVNGEGSLKV-SAEDSLHLVEALSMVITE-LPQVDAKKALEMLCLPVVT 612 (959)
Q Consensus 543 ~lc~~c~--~~L~--~~~~~ll~~~-~---~~~~~~~~~~l-~~~~~~~l~eai~~vi~~-~p~~~~~~~l~~ll~p~~~ 612 (959)
.+.-.-. +.|. +-+.-+++-. . ..+.. ...+ ....|-..|+++|.++-. ..+++ ..+++++.|+.+
T Consensus 614 dLs~GY~~~kkL~kl~~VqfmlnNHT~ehF~FLg~--~~~~~~~r~RTTFY~al~rLl~~d~sede--~~fe~fm~PLt~ 689 (1082)
T KOG1410|consen 614 DLSLGYSAVKKLVKLDAVQFMLNNHTSEHFPFLGI--NIDLQDMRCRTTFYTALTRLLMVDLSEDE--DMFERFMLPLTD 689 (1082)
T ss_pred HHhhhHHHHHHHhcchhhhhHhcccchhhCccccc--CccchhhhhHhHHHHHHHHHHhhcccccH--HHHHHHHHHHHH
Confidence 5554221 1222 1111111100 0 01100 0011 245677899999998865 33222 446678888888
Q ss_pred HHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCC-------cc---cHHHH-HHHHhHHHHHHHHhhcccHHHHHHH
Q 002148 613 PLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNH-------PE---AVADA-IQRLWPIFKAIFDIRAWDMRTMESL 681 (959)
Q Consensus 613 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-------~~---~~~~~-~~~~~~~l~~il~~~~~~~~i~e~~ 681 (959)
.++.+++--+.+.- ...++... +..+.|.+.+ .- -..+. ....+|++....++|.+.+++.--+
T Consensus 690 ~fe~v~~~~~nn~f--~ee~vK~~---liGL~RDLRGiA~A~~tktsy~~LFdWmYP~~mpllq~~Ve~W~~~p~vtTPi 764 (1082)
T KOG1410|consen 690 AFEGVLQVFQNNCF--EEEQVKRI---LIGLCRDLRGIAFASNTKTSYQMLFDWMYPEYMPLLQRAVEKWYGCPDVTTPI 764 (1082)
T ss_pred HHHHHHHHhccccc--cHHHHHHH---HHHHHHHhhhhhhhhccchHHHHHHHHhhhhHHHHHHHHHHhcCCCCccccHH
Confidence 88876664432210 01112111 1222222221 11 11121 3477888888889998877665555
Q ss_pred HHHHHH---------------------------HHHHhhhhhhhhHHHHHHHHHHHHhhcCC-cchhHhHHHHHHHhCC-
Q 002148 682 CRACKY---------------------------AVRTSKRFMGITIGAILEEIQGLYQQHQQ-PCFLYLSSEVIKIFGS- 732 (959)
Q Consensus 682 ~~~l~~---------------------------~~~~~~~~~~~~l~~l~~~l~~~~~~~~~-~~~L~l~~~li~~~~~- 732 (959)
.+.... ++..+|.-+.. +|.+-.-=+..++-... .||.-+-..+...|-.
T Consensus 765 LklmaE~v~NrsQRL~Fd~SSpngiLLFrEtSKmv~~YG~riL~-Lp~vskdqiY~~kyKgI~v~~siLk~AL~GnYv~F 843 (1082)
T KOG1410|consen 765 LKLMAELVQNRSQRLKFDVSSPNGILLFRETSKMVSIYGNRILQ-LPEVSKDQIYAEKYKGISVCFSILKNALSGNYVNF 843 (1082)
T ss_pred HHHHHHHHhhhHhheecccCCCceeEEehhhhHHHHHHhhHhhc-ccCcchhhhHHHHhcCceehHHHHHHHhhcCcccc
Confidence 444442 22233333221 12211100111111122 3443333333332211
Q ss_pred --Cccch-HHHHHHHHHHHHHHHHhhcC--cccCCCCCCcHHHHHHHHHHHHhhCCCcccC--cCChHHHHHHHHHhccC
Q 002148 733 --DPSCA-SYLHNLIEALFKRTTCLLTS--IEEFTSRPDVADDCFLLASRCIRYCPQLFIP--SSVFPSLVDCSMIGITV 805 (959)
Q Consensus 733 --~~~~~-~~l~~~~~~l~~~~~~~l~~--~~~~~~~pDl~~~~f~l~~~~~~~~p~~~l~--s~~l~~~~~~~~~~l~~ 805 (959)
-.-+. ..+.+.+..+ +.++-+ ..++-+++.+.++||+|+..+...+-..+.. .+.+-.++...-.|++.
T Consensus 844 GVFrLYGD~~l~daL~~f----vKm~lsIp~sD~l~Y~Klsqsyy~llE~l~qdhm~Fi~nL~~~vfm~ll~Si~sGLt~ 919 (1082)
T KOG1410|consen 844 GVFRLYGDSALDDALQTF----VKMLLSIPHSDLLSYRKLSQSYYNLLEVLTQDHMPFITNLEPDVFMYLLRSISSGLTS 919 (1082)
T ss_pred ceeeeeCchHHHHHHHHH----HHHHhcCCHHHHHhHHHHHHHHhhHHHHHHhccchhhhcCcHHHHHHHHHHHHhccch
Confidence 00011 2344444333 333332 2345678889999999999998855443333 34455555555566666
Q ss_pred CCchhHHHHHHHHHHhhc
Q 002148 806 QHREASNSILTFLSDIFD 823 (959)
Q Consensus 806 ~~~~~~~~~~~fl~~li~ 823 (959)
-+.-...+||..+..+++
T Consensus 920 lDt~v~ssccsslD~i~t 937 (1082)
T KOG1410|consen 920 LDTIVSSSCCSSLDTIVT 937 (1082)
T ss_pred hhHHHHhHHHHHHHHHHH
Confidence 666666777776666665
No 13
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=4.7e-13 Score=146.46 Aligned_cols=616 Identities=13% Similarity=0.110 Sum_probs=344.7
Q ss_pred CCCHHHHHHHHHHHHHHhcChhhHHHHHHHhccCCCChhHHHHHHHHHHhhhhcCCCCC-----ChhhHHHHHHHHHHHH
Q 002148 17 HPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEEL-----PSEAVRGLQDSLNTLL 91 (959)
Q Consensus 17 ~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~~~faa~~L~~ki~~~w~~l-----~~~~~~~lr~~Ll~~l 91 (959)
..|+..|+.|+..|.+++|.|+....|.+++.+...+..+|.-||..+++||.+.|+.+ +++++...|+.+++.+
T Consensus 14 dada~~rt~AE~~Lk~leKqPgFv~all~i~s~de~~lnvklsAaIYfKNkI~rsWss~~d~~i~~Dek~e~K~~lieni 93 (970)
T COG5656 14 DADAGKRTIAEAMLKDLEKQPGFVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKRDDGIKADEKSEAKKYLIENI 93 (970)
T ss_pred ccCcchhhHHHHHHHHhhcCCcHHHHHHHHHhhccCCchhhHHHHHHHhhhhhhhhhhcccCCCCCcccHHHHHHHHHHH
Confidence 56888999999999999999999999999998756788999999999999999999863 3456777777777665
Q ss_pred HH-hcCCChHHHHHHHHHHHHHHhhccc-cccCCccchHHHHHhcCCCCC-chhhHHHHhcccccccccccccCChhHHH
Q 002148 92 KK-FHKGPPKVRTQISIAVAALAVHISA-EDWGGGGIVNWLRDEMNSHPE-FVPGFLELLTVLPEEVFNYKIAARPERRR 168 (959)
Q Consensus 92 ~~-~~~~~~~v~~kL~~~la~l~~~~~~-~~Wp~~~~~~~l~~~l~~~~~-~~~~~L~~L~~l~EE~~~~~~~l~~~~r~ 168 (959)
.. +-.+|...|+-+..++..++-..+| +.|+ +.+...+.+.++.. .+..+|.++..+..- .+.... .+|.
T Consensus 94 l~v~l~sp~~tr~~l~ail~~I~seD~ps~~wg---l~p~~~nll~s~ea~~vy~gLlcl~elfka---yRwk~n-deq~ 166 (970)
T COG5656 94 LDVFLYSPEVTRTALNAILVNIFSEDKPSDLWG---LFPKAANLLRSSEANHVYTGLLCLEELFKA---YRWKYN-DEQV 166 (970)
T ss_pred HHHHhcCCchHHHHHHHHHHHhccccCchhhcc---cchHHHHhhcccchhHHHHHHHHHHHHHHH---Hhhhcc-chHh
Confidence 55 2357888888888888887776655 6676 67777777776542 334455555443221 222222 2333
Q ss_pred HHHHHHHHhHHHHHHHHHHhhhh-----hHhHHHHHHHHHHHHhccCCCCCcccccchhHHHHHhcCCCCchHHHHHHHH
Q 002148 169 QFEKELTSQMEVALSTLTACLHI-----NELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVI 243 (959)
Q Consensus 169 ~l~~~l~~~~~~vl~~l~~~l~~-----~~~~~~~l~~~~sWi~~~~~~~~~~~~~~~ll~~~~~~L~~~~~~~~a~~~l 243 (959)
.+..-+...+|.+.++=..+... .++...+||.+.+.+-+ ++|.. |+.++.+..+....
T Consensus 167 di~~li~alfpile~~g~nl~s~~ny~s~e~l~LILk~fKsvcy~--~LP~~--------------lsa~e~f~sw~ql~ 230 (970)
T COG5656 167 DILMLITALFPILEKVGGNLESQGNYGSVETLMLILKSFKSVCYY--SLPDF--------------LSAIETFSSWFQLS 230 (970)
T ss_pred hHHHHHHHhhHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHh--hCCHH--------------HccchhhHHHHHHH
Confidence 34344456666666654444431 25778899999888776 36643 23445566666777
Q ss_pred HHHHhhhccCC--CCCCCCc--hhHH---HHHHHHHHhhHHHhhhcCCCHHHHHHHHHHHHHhhhHHHHH----HhcC-C
Q 002148 244 SELIHYSAAGS--SGGATVN--MPLI---QVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVEL----IATG-S 311 (959)
Q Consensus 244 ~~ii~~~~~~~--~~~~~~~--~~~~---~~l~~~v~~l~~~l~~~~~d~e~~~~l~~l~~~~~~~~~~~----l~~~-~ 311 (959)
..+++++.+.. .-|++.+ -+++ .|-+. .+-|.|...+...... +... -
T Consensus 231 l~i~qkplp~evlsldpevRs~~~wvKckKWa~y--------------------nLyR~fqRy~k~s~~~~y~~f~~~f~ 290 (970)
T COG5656 231 LRILQKPLPNEVLSLDPEVRSLSKWVKCKKWAAY--------------------NLYRSFQRYIKKSYKKSYLSFYITFM 290 (970)
T ss_pred HHHHcCCCCHHHhccChhhccccchhhhhHHHHH--------------------HHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 77777654211 0011110 0111 12222 2222222222211100 0000 0
Q ss_pred chHHHHHHHHHhhcc-CC--CcchhhhhHHhHHHhHHHHhhcccccccCcccchHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 002148 312 DESMLIVHALLEVAS-HP--EYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRV 388 (959)
Q Consensus 312 ~~~~~~l~~ll~~~~-~~--~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~ 388 (959)
..+..+++..++-.. +. ..=.+...+.|...|.+.-.+. .+.|...+|++.-++...+--+
T Consensus 291 t~vp~il~tffkqie~wgqgqLWlsd~~LYfi~~Fve~cv~~----------------d~tw~l~ePhlq~ii~~vIfPl 354 (970)
T COG5656 291 TRVPMILATFFKQIEEWGQGQLWLSDIELYFIDFFVELCVDA----------------DQTWRLMEPHLQYIISGVIFPL 354 (970)
T ss_pred HHHHHHHHHHHHHHHHhhcCCeecchHHHHHHHHHHHHHhhh----------------HhhHhhhccHHHHHHHhhhhhh
Confidence 001111222221111 11 1123445555555555443221 2467888999766665444333
Q ss_pred cCCC--CCCCCChhhhHHHHH-----H----HHHhh--HHHHHhhhccChHH----HHHHHHHHHHHhhhhcCCCCCCcc
Q 002148 389 QYPQ--DYQDLSLEDLKEFKH-----T----RYAVA--DVLIDAASVLGGDA----TLKILYIKFVEGVACCGNKHNEWR 451 (959)
Q Consensus 389 ~~p~--d~~~~~~d~~~~f~~-----~----R~~~~--d~l~~~~~il~~~~----~l~~l~~~l~~~~~~~~~~~~~w~ 451 (959)
-.+. +.+.|+.|. ++|-+ | |-+++ +++.-+..- +++. +++.+.+.+.+..++..+ -.+-+
T Consensus 355 lc~see~eElfEnDp-~eyirry~df~d~g~spdlaal~fl~~~~sK-rke~TfqgiLsf~~sil~qsaa~psn-~dnar 431 (970)
T COG5656 355 LCLSEEEEELFENDP-DEYIRRYYDFFDNGLSPDLAALFFLIISKSK-RKEETFQGILSFLLSILGQSAATPSN-IDNAR 431 (970)
T ss_pred cCCChhhHHHHhcCH-HHHHHHhcchhcCCCChhHHHHHHHHHHhcc-cchhhhhhHHHHHHHHHhcccCCCCc-cccHH
Confidence 2333 233344333 22211 1 12221 222222222 2233 444455555443222222 35678
Q ss_pred hhhHHHHHHHHhhcccCCccccchHHHhhh------ccCCC-CcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHH
Q 002148 452 PAEAALFCIRAISTYVSVVEAEVMPQVMAL------LPKLP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILT 524 (959)
Q Consensus 452 ~~Ea~l~~l~~l~e~~~~~~~~~l~~l~~~------l~~lp-~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~ 524 (959)
+.|+|++.+.++..-++. .....++++. +|.+. ....++..+|+++++|++-++.+. .+..++....
T Consensus 432 q~egalr~lasi~s~itk--~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~~----ill~aye~t~ 505 (970)
T COG5656 432 QAEGALRLLASIKSFITK--MSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDNG----ILLEAYENTH 505 (970)
T ss_pred HHhhHHHHHHHHHHHhcc--CchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccch----HHHHHHHHHH
Confidence 899999999999884433 3344555553 22232 246799999999999988777653 5666777766
Q ss_pred hccCCCH-HHHHHHHHHHHHHHHHhh--hhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCChHHHHH
Q 002148 525 SGMSTSE-DTAAAAALAFRHICDDCR--KKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKK 601 (959)
Q Consensus 525 ~~l~~~~-~v~~~A~~al~~lc~~c~--~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~ 601 (959)
.++.+.. +|+..||.|+.-|..+-. ..+..|++..++.+..+-+. ...+.-..++|++ ++..+ ++..+
T Consensus 506 ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~-----feiD~LS~vMe~f---Ve~fs-eELsp 576 (970)
T COG5656 506 NCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNT-----FEIDPLSMVMESF---VEYFS-EELSP 576 (970)
T ss_pred HHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhccc-----ccchHHHHHHHHH---HHHhH-Hhhch
Confidence 6776542 489999999999886544 44668888888888777553 4555666667665 33333 34444
Q ss_pred HHHHhhhhhHHHHH----HHHhcCCCcccccCchh--hhHHHHHHHHHhhhcCC-cccHHHHHHHHhHHHHHHHHhhccc
Q 002148 602 ALEMLCLPVVTPLQ----EIINQGPEILQKKHPRD--LTVHIDRFAYIFRYVNH-PEAVADAIQRLWPIFKAIFDIRAWD 674 (959)
Q Consensus 602 ~l~~ll~p~~~~l~----~~~~~~~~~~~~~~~~~--~~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~il~~~~~~ 674 (959)
+...+...+.+++- ....+.....+...-++ ....++++.++.-++.. |.......+.+.|++.-++.+- -
T Consensus 577 fa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~--i 654 (970)
T COG5656 577 FAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNE--I 654 (970)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhh--H
Confidence 54555555554333 33333311111001111 22345666666666654 4444455667788888777542 2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHh
Q 002148 675 MRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQ 712 (959)
Q Consensus 675 ~~i~e~~~~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~ 712 (959)
.+.+..+|.++.. .+-....+.|..+++.+.+.....
T Consensus 655 ~dfy~Ea~dildg-~tf~skeI~pimwgi~Ell~~~l~ 691 (970)
T COG5656 655 SDFYQEALDILDG-YTFMSKEIEPIMWGIFELLLNLLI 691 (970)
T ss_pred HHHHHHHHHHHhh-hhHHHHHhhhhhhHHHHHHHhccc
Confidence 2455556665542 111233445677777777665443
No 14
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.77 E-value=5.7e-14 Score=157.22 Aligned_cols=499 Identities=17% Similarity=0.195 Sum_probs=272.0
Q ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcChhhHHHHHHHhccCCCChhHHHHHHHHHHhhhhcCCCCC---------
Q 002148 5 NTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEEL--------- 75 (959)
Q Consensus 5 ~~v~~av~~l~~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~~~faa~~L~~ki~~~w~~l--------- 75 (959)
+.+.+.+.... ++|+..|.+|+..|.+...+++--.....+..+...+.+.|++|+..|++-|.++|...
T Consensus 4 ~~ii~~L~~~l-s~d~~vr~~AE~~l~qle~~~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~~~ 82 (1005)
T KOG2274|consen 4 QAIIELLSGSL-SADQNVRSQAETQLKQLELTEGFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYPLI 82 (1005)
T ss_pred HHHHHHHHhhc-CCChhHHHHHHHHHhccccchHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhccCCCc
Confidence 34445555543 67999999999999999998885555556665545788899999999999999999643
Q ss_pred -ChhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCC-CCchhhHHHHhccccc
Q 002148 76 -PSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSH-PEFVPGFLELLTVLPE 153 (959)
Q Consensus 76 -~~~~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~l~~~-~~~~~~~L~~L~~l~E 153 (959)
+++.+..+|+.|++.+.. .++.+++-.+.+++.++...+|+.||+ .++.+...++++ .++....++.|..+..
T Consensus 83 ~~e~~K~~IRe~Ll~~l~~---sn~ki~~~vay~is~Ia~~D~Pd~WpE--lv~~i~~~l~~~n~n~i~~am~vL~el~~ 157 (1005)
T KOG2274|consen 83 VSEEVKALIREQLLNLLDD---SNSKIRSAVAYAISSIAAVDYPDEWPE--LVPFILKLLSSGNENSIHGAMRVLAELSD 157 (1005)
T ss_pred ccHHHHHHHHHHHHhhhhc---cccccchHHHHHHHHHHhccCchhhHH--HHHHHHHHHhccchhhhhhHHHHHHHHHH
Confidence 345688899999988874 677899999999999999999999999 999999888754 3456778888877777
Q ss_pred cccccccc-CChhHHHHHHHHHHHhHHHHHHHHHHhhhhhHhHHHHHHHHHHHHhccCCCCCcccccchhHHHHHhcCCC
Q 002148 154 EVFNYKIA-ARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHS 232 (959)
Q Consensus 154 E~~~~~~~-l~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~~~~~~~l~~~~sWi~~~~~~~~~~~~~~~ll~~~~~~L~~ 232 (959)
|+...... ..+- ....+..++.+....-- ..+..+. . -+++..++
T Consensus 158 ev~~ee~~~~~~~--------~l~~m~~~f~~~~~~s~--~~~~~aa---~----------------~~lf~sc~----- 203 (1005)
T KOG2274|consen 158 EVDVEEMFFVGPV--------SLAEMYRIFALTIVYSI--ITRLGAA---R----------------GKLFTSCL----- 203 (1005)
T ss_pred HHHHHHHhccccc--------chhhhhhhhhhccccch--hHHHHhh---h----------------hHHHHHHH-----
Confidence 66421100 0000 01111112211110000 0000000 0 01111011
Q ss_pred CchHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHhhHHH-hhhcCCC-HHHHHHHHHHHHHhhhHHHHHHhcC
Q 002148 233 EILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAH-LTDSSKD-EEDVKAIARLFADMGDSYVELIATG 310 (959)
Q Consensus 233 ~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~-l~~~~~d-~e~~~~l~~l~~~~~~~~~~~l~~~ 310 (959)
.+.+...+.. ......++..+++..+..... +...+.+ .-......+.++.+++.++.++..-
T Consensus 204 ---------~li~~~~e~~------~~~~~~~~s~~l~~~~~~l~h~l~~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~ 268 (1005)
T KOG2274|consen 204 ---------TLITNVEEVW------AEHVKVFLSQILNQFMDILEHPLQRNDGSDFSLRMEILKCLTQLVENFPSLINPF 268 (1005)
T ss_pred ---------HHHhHHHHHH------HHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHhhHHhhhHH
Confidence 0111110000 000111222223222221111 1111111 1223456667777777777655310
Q ss_pred -----CchHHHHHHHHHh-----hccCC----------C------cchhhhhHHhHHHhHHHHhhcccccccCcccchHH
Q 002148 311 -----SDESMLIVHALLE-----VASHP----------E------YDIASMTFNFWHSLQVILTKRDSYISFGNEASAEA 364 (959)
Q Consensus 311 -----~~~~~~~l~~ll~-----~~~~~----------~------~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~ 364 (959)
+. ....++-.+. -..+. + ++..-..++|-..+.+....+
T Consensus 269 ~~~~~~~-vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~~~~~~l~i~i~eF~s~i~t~~~~~-------------- 333 (1005)
T KOG2274|consen 269 MMGMFSI-VWQTLEKILAVYVRESVNGTEDSYDARYDSDPEEKSVETLVIQIVEFLSTIVTNRFLS-------------- 333 (1005)
T ss_pred HHhhhhH-HHHHHHHHHhhhhhhhccccccCcccccCCchhhhChHHhhhhHHHHHHHHHHHHHHH--------------
Confidence 11 1111111111 11110 0 122335566766555433211
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhhccCCC--------CCCC--CChhhhHHHHHHHHHhhHHHHHhhhccChHHHHHHHHH
Q 002148 365 ERSRRLQVFRSAYESLVSLVSFRVQYPQ--------DYQD--LSLEDLKEFKHTRYAVADVLIDAASVLGGDATLKILYI 434 (959)
Q Consensus 365 ~~~~~~~~~~~~~~~Ll~~l~~k~~~p~--------d~~~--~~~d~~~~f~~~R~~~~d~l~~~~~il~~~~~l~~l~~ 434 (959)
...+..+..++..+..-++.++ |.+. |++++. ..-|..+.|.+..+..-.|.. .+.-+.+
T Consensus 334 ------~ti~~~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV~dEd~~---~~~~~~~rd~~~~v~~~f~~~-~i~~i~~ 403 (1005)
T KOG2274|consen 334 ------KTIKKNLPELIYQLVAYLQLSEEQIEVWTSDVNQFVADEDDG---YTARISVRDLLLEVITTFGNE-GINPIQD 403 (1005)
T ss_pred ------HHhhhhhHHHHHHHHHHHHhhHHHHHHHhccHHHhhccCCCC---chhhhhHHHHHHHHHHhccch-hhhHHHH
Confidence 0111111112222222222232 2111 122221 345777788888887777743 4343444
Q ss_pred H----HHHhhhh-cCCCCCCcchhhHHHHHHHHhhcccCCccccchHHHhhhccC-C--CCcHHHHHHHHHHHHhhhhHH
Q 002148 435 K----FVEGVAC-CGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPK-L--PQQPQLLQTVCLTIGAYSKWF 506 (959)
Q Consensus 435 ~----l~~~~~~-~~~~~~~w~~~Ea~l~~l~~l~e~~~~~~~~~l~~l~~~l~~-l--p~~~~v~~t~~~~ig~y~~~l 506 (959)
. +++..++ ..++...|.--|+++++..++..+.. .++.+..+..++-. + .+-|.+...+++++++|++-+
T Consensus 404 a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~~~--~dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~ 481 (1005)
T KOG2274|consen 404 AAGRHFQESQATYLFNNESWWKIQEALLVAAESVRIDDA--NDDKLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSST 481 (1005)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccCcc--hHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhh
Confidence 3 3332111 12225679999999999888873321 23344444444322 2 234666669999999888876
Q ss_pred hhCCCChhhHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHH
Q 002148 507 DAASSDPSILASVLSILTSGMST--SEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLV 584 (959)
Q Consensus 507 ~~~p~~~~~l~~~l~~l~~~l~~--~~~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~ 584 (959)
-.+|+ ++...++..+.+++. +..++.+|+.+|...| -.+.+.|+.|.+++.+.++.+. .+.+.-..+|
T Consensus 482 ~~~~~---~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~--~~~vl~~~~p~ild~L~qlas~-----~s~evl~llm 551 (1005)
T KOG2274|consen 482 VINPQ---LLQHFLNATVNALTMDVPPPVKISAVRAFCGYC--KVKVLLSLQPMILDGLLQLASK-----SSDEVLVLLM 551 (1005)
T ss_pred ccchh---HHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc--CceeccccchHHHHHHHHHccc-----ccHHHHHHHH
Confidence 66775 777888777776653 3336666666666666 2345668999999998888753 4566777888
Q ss_pred HHHHHHHhcCC
Q 002148 585 EALSMVITELP 595 (959)
Q Consensus 585 eai~~vi~~~p 595 (959)
|+++.++.--|
T Consensus 552 E~Ls~vv~~dp 562 (1005)
T KOG2274|consen 552 EALSSVVKLDP 562 (1005)
T ss_pred HHHHHHhccCh
Confidence 88887775533
No 15
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=99.70 E-value=3.6e-17 Score=157.14 Aligned_cols=141 Identities=26% Similarity=0.434 Sum_probs=126.4
Q ss_pred ChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCCCchhhHHHHhccccccccc-ccccCChhHHHHHHHHHHH
Q 002148 98 PPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFN-YKIAARPERRRQFEKELTS 176 (959)
Q Consensus 98 ~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~l~~~~~~~~~~L~~L~~l~EE~~~-~~~~l~~~~r~~l~~~l~~ 176 (959)
|++|++|+|.+++.++++.+|+.||+ +++++++.+++++....++|++|+.++||+.+ .+..++..||.++++.+.+
T Consensus 1 p~~i~~kl~~~l~~i~~~~~P~~Wp~--~l~~l~~~~~~~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~ 78 (148)
T PF08389_consen 1 PPFIRNKLAQVLAEIAKRDWPQQWPD--FLEDLLQLLQSSPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRS 78 (148)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTTTSTT--HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHChhhCch--HHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHH
Confidence 68999999999999999999999999 99999999988777788999999999999986 3455667899999999999
Q ss_pred hHHHHHHHHHHhhhh------hHhHHHHHHHHHHHHhccCCCCCcccccchhHHHHHhcCCCCchHHHHHHHH
Q 002148 177 QMEVALSTLTACLHI------NELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVI 243 (959)
Q Consensus 177 ~~~~vl~~l~~~l~~------~~~~~~~l~~~~sWi~~~~~~~~~~~~~~~ll~~~~~~L~~~~~~~~a~~~l 243 (959)
+++.|++++.++++. +++...+++|+.+|+.+ ++.+.+.++++++.+|+.|++++++++|++||
T Consensus 79 ~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~---~~~~~i~~~~~l~~~~~~l~~~~~~~~A~~cl 148 (148)
T PF08389_consen 79 NSPDILEILSQILSQSSSEANEELVKAALKCLKSWISW---IPIELIINSNLLNLIFQLLQSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTT---S-HHHHHSSSHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHh---CCHHHhccHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 999999999998876 46789999999999997 66677778889999999999999999999996
No 16
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=99.69 E-value=1.9e-15 Score=161.57 Aligned_cols=229 Identities=19% Similarity=0.252 Sum_probs=192.6
Q ss_pred hhhhHHHHHHHHHHHHhhc----CCcchhHhHHHHHHHhCCCccchHHHHHHHHHHHHHHHHhhcCcccCCCCCCcHHHH
Q 002148 696 MGITIGAILEEIQGLYQQH----QQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDC 771 (959)
Q Consensus 696 ~~~~l~~l~~~l~~~~~~~----~~~~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pDl~~~~ 771 (959)
...++|++++.++.+|+++ +.+..|.+++.++.+.|.. ..+.+..+++.++.++++++. .+..++||++.+|
T Consensus 65 ~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~--~~~~v~~I~~~vf~~Tl~MI~--~d~~~yPe~r~~f 140 (319)
T PF08767_consen 65 ANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGEL--IQPQVPQILEAVFECTLPMIN--KDFEEYPEHRVNF 140 (319)
T ss_dssp HHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGG--CCCCHHHHHHHHHHHHHHHHS--STSSSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHH--hhhhhChHHHHHH
Confidence 3478899999999999964 6788999999999999985 557788889999999999998 6788999999999
Q ss_pred HHHHHHHHhhCCCccc--CcCChHHHHHHHHHhccCCCchhHHHHHHHHHHhhcCcCCCCchhhHHHHHHHHhhccHHHH
Q 002148 772 FLLASRCIRYCPQLFI--PSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASIT 849 (959)
Q Consensus 772 f~l~~~~~~~~p~~~l--~s~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~g~~lv 849 (959)
|.|+..+.++|+..++ +++.+..++++.++|+++.++++...+++.+..+++.... ..+ +..++++..+...++
T Consensus 141 f~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~-~~~---~~~~~F~~~y~~~il 216 (319)
T PF08767_consen 141 FKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK-TNP---EFANQFYQQYYLDIL 216 (319)
T ss_dssp HHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH--SH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh-cCH---HHHHHHHHHHHHHHH
Confidence 9999999999998775 5678999999999999999999999999999999986432 122 336788899999999
Q ss_pred HHHHHHcccCCCCCCcccHHHHHHHHHHHh----------------hHHHHHHHHHHH-hhCCCCCCCHHHHHHHHHHHH
Q 002148 850 RILIASLTGALPSSRLETVTYALLALTRAY----------------GVRSLEWAKESV-SLIPLTALAEVERSRFLQALS 912 (959)
Q Consensus 850 ~~ll~~l~~~~~~~~~~~~a~il~~l~~~~----------------~~~~~~wl~~~l-~~~p~~~~~~~~~~~f~~~l~ 912 (959)
..++..+.+..+++.++..+.+|..+.+.. .+...+|+.+.+ +.|| ++++++.+.|+..++
T Consensus 217 ~~if~vltD~~Hk~gf~~q~~iL~~Lf~~ve~~~i~~~l~~~~~~n~~~v~~~i~~~L~~~Fp--~l~~~qi~~fv~~Lf 294 (319)
T PF08767_consen 217 QDIFSVLTDSDHKSGFKLQSQILSNLFRLVESGSIQVPLFDPGMSNQEFVSEYIANLLSEAFP--NLSPKQIENFVQGLF 294 (319)
T ss_dssp HHHHHHHHSTT-GGGHHHHHHHHHHHHHHHHTT-SSSSSSSTTT-HHHHHHHHHHHHHHHH-T--TS-HHHHHHHHHHHH
T ss_pred HHHHHHHHCcccHHHHHHHHHHHHHHHHHHHcccccccccCCCCccHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHH
Confidence 999999999999999999999999998641 134677888777 4789 799999999999999
Q ss_pred HHhcCCCchhhhHHHHHHHHHHHh
Q 002148 913 EAASGVDVNAAMAPVEELSDVCRR 936 (959)
Q Consensus 913 ~~~~~~~~~~f~~~l~~F~~~~r~ 936 (959)
.. .++..+||..++||....|.
T Consensus 295 ~~--~~d~~~Fk~~lrDFlI~~ke 316 (319)
T PF08767_consen 295 EL--NNDPEKFKTHLRDFLIQLKE 316 (319)
T ss_dssp HT--TT-HHHHHHHHHHHHHHHTS
T ss_pred Hh--cCCHHHHHHHHHHHhhhhhh
Confidence 85 35799999999999987764
No 17
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=7.2e-11 Score=130.75 Aligned_cols=169 Identities=14% Similarity=0.133 Sum_probs=127.4
Q ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHhcChhhHHHHHHHhccCCCChhHHHHHHHHHHhhhhcCCC-----CCChhhHHH
Q 002148 8 KEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVE-----ELPSEAVRG 82 (959)
Q Consensus 8 ~~av~~l~~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~~~faa~~L~~ki~~~w~-----~l~~~~~~~ 82 (959)
.+.++.. .++|+..++.|++.|++.++.|+.......+..+.+.+..+|..|+..+|+-|.+.|. .+++|++..
T Consensus 3 vq~Lq~A-ts~d~~v~k~AE~qLr~WEtqPGF~~~L~sI~l~~t~dv~vRWmAviyfKNgIdryWR~~~~~sl~~EEK~~ 81 (978)
T KOG1993|consen 3 VQVLQQA-TSQDHIVVKPAEAQLRQWETQPGFFSKLYSIFLSKTNDVSVRWMAVIYFKNGIDRYWRRNTKMSLPPEEKDF 81 (978)
T ss_pred HHHHHHh-cCCCcccchhHHHHHHhhccCCcHHHHHHHHHhccccceeeeeehhhhHhcchhHHhhcCCcccCCHHHHHH
Confidence 3445554 4778999999999999999999999998888876567788999999999999999995 789999999
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCC----CC-chhhHHHHhccccccccc
Q 002148 83 LQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSH----PE-FVPGFLELLTVLPEEVFN 157 (959)
Q Consensus 83 lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~l~~~----~~-~~~~~L~~L~~l~EE~~~ 157 (959)
||..++.++.. ....+..|.+..+|.++.-.+|..||+ +++++.+.+++. .. ...-.|..|.-+--+.++
T Consensus 82 iR~~Ll~~~~E---~~nQlaiQ~AvlisrIARlDyPreWP~--Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK~Lat 156 (978)
T KOG1993|consen 82 IRCNLLLHSDE---ENNQLAIQNAVLISRIARLDYPREWPD--LFPDLLGQLQSSLGTGDSLVQHRILITLHHILKALAT 156 (978)
T ss_pred HHHHHHHhccc---chhHHHHHHHHHHHHHHhcCCCccchh--HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 99999888764 567889999999999999999999999 999998887653 11 111222222222222222
Q ss_pred ccccCChhHHHHHHHHHHHhHHHHHHHHHHhh
Q 002148 158 YKIAARPERRRQFEKELTSQMEVALSTLTACL 189 (959)
Q Consensus 158 ~~~~l~~~~r~~l~~~l~~~~~~vl~~l~~~l 189 (959)
.|-.+-|+.+.+-.+.+++++.-.+
T Consensus 157 -------~RL~a~rk~F~el~~~I~~~l~~~l 181 (978)
T KOG1993|consen 157 -------KRLLADRKAFYELAPEILTILAPIL 181 (978)
T ss_pred -------hHHhhhhHHHHHHhHHHHHHHHHHH
Confidence 2223445666777777777655433
No 18
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=5.6e-06 Score=97.51 Aligned_cols=330 Identities=15% Similarity=0.106 Sum_probs=194.6
Q ss_pred CCCcchhhHHHHHHHHhhcccCCccc----cc-hHHHhhhccCCCCcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHH
Q 002148 447 HNEWRPAEAALFCIRAISTYVSVVEA----EV-MPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLS 521 (959)
Q Consensus 447 ~~~w~~~Ea~l~~l~~l~e~~~~~~~----~~-l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~ 521 (959)
+++-+-+-|||++++.++..+.++-+ +. ++-++..+-. +.+++|..-+.-.+-.+++..... ....||+.+++
T Consensus 400 DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~-~~~~rV~ahAa~al~nf~E~~~~~-~l~pYLd~lm~ 477 (1075)
T KOG2171|consen 400 DPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDS-TQNVRVQAHAAAALVNFSEECDKS-ILEPYLDGLME 477 (1075)
T ss_pred CCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcc-cCchHHHHHHHHHHHHHHHhCcHH-HHHHHHHHHHH
Confidence 67788889999999999999987632 22 2233333322 347888887777776666654432 11247888888
Q ss_pred HHHhccCCC--HHHHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCChHHH
Q 002148 522 ILTSGMSTS--EDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDA 599 (959)
Q Consensus 522 ~l~~~l~~~--~~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~ 599 (959)
..+..+..+ ..++..+..|+...++.+...+.||.+.+|..+.+++.+.++.. ...-|-+.+|+++.+..++..+..
T Consensus 478 ~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d-~r~LrgktmEcisli~~AVGke~F 556 (1075)
T KOG2171|consen 478 KKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKD-LRELRGKTMECLSLIARAVGKEKF 556 (1075)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchh-hHHHHhhHHHHHHHHHHHhhhhhh
Confidence 544444332 24999999999999999999999999999999999887643212 244567889999999999887777
Q ss_pred HHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhc-------
Q 002148 600 KKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRA------- 672 (959)
Q Consensus 600 ~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~------- 672 (959)
.+..+.+++-....- .+.. . +++..+. ..+...+.+.+.++ ..+.+++..++|-+....+.-+
T Consensus 557 ~~~a~eliqll~~~~----~~~~-~-~dd~~~s--y~~~~warmc~ilg--~~F~p~L~~Vmppl~~ta~~~p~~~~~d~ 626 (1075)
T KOG2171|consen 557 LPLAEELIQLLLELQ----GSDQ-D-DDDPLRS--YMIAFWARMCRILG--DDFAPFLPVVMPPLLKTARLDPDVALSDE 626 (1075)
T ss_pred hHhHHHHHHHHHhhc----ccch-h-hccccHH--HHHHHHHHHHHHhc--hhhHhHHHHHhHHHHHhhccCCcccCcCc
Confidence 776666666554331 1111 0 1111122 22444444444443 3356666666665544322110
Q ss_pred ------------------cc-------HHHH--HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCC----cchhH
Q 002148 673 ------------------WD-------MRTM--ESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQ----PCFLY 721 (959)
Q Consensus 673 ------------------~~-------~~i~--e~~~~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~----~~~L~ 721 (959)
++ ..+- +.+|..+...-..++..+.|++.+.++..+-...-..| .+++.
T Consensus 627 ~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~ 706 (1075)
T KOG2171|consen 627 EDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAE 706 (1075)
T ss_pred hhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 00 0111 22555555555556777888887777733322222222 23333
Q ss_pred hHHHHHHHhCCC-ccchHHHHHHHHHHHHHHHHhhcCcccCCCCCCcHHHHHHHHHHHHhhCCCcccCcCChH
Q 002148 722 LSSEVIKIFGSD-PSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFP 793 (959)
Q Consensus 722 l~~~li~~~~~~-~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pDl~~~~f~l~~~~~~~~p~~~l~s~~l~ 793 (959)
++-.++.+...- ..+...+..+...+....+..+. ..-.+++..++++=+..+++.+....+..+.++
T Consensus 707 ~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~----~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~ 775 (1075)
T KOG2171|consen 707 SMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALE----EEPETEVLSEILESFAECIEVMGDNCLNEDGLE 775 (1075)
T ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhh----cCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHH
Confidence 444444332220 11223455555555554444443 233577999999999999987765555544333
No 19
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=99.28 E-value=7.9e-08 Score=109.35 Aligned_cols=130 Identities=16% Similarity=0.147 Sum_probs=106.7
Q ss_pred CchHHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcChhhHHHHHHHhccCCCChhHHHHHHHHHHhhhhcCCCC-----C
Q 002148 1 MELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEE-----L 75 (959)
Q Consensus 1 ~~~~~~v~~av~~l~~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~~~faa~~L~~ki~~~w~~-----l 75 (959)
|+....|+++-.+ .++||..++.|++-|++..+.++.......+..+...+..+|.-|+.-+|+-|.++|.+ +
T Consensus 1 M~~~~vv~~~~~a--qs~~p~s~k~AE~~Lrqwe~q~gF~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i 78 (947)
T COG5657 1 MEDLPVVKQLDLA--QSPDPPSVKCAEERLRQWEKQHGFALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREENGNSI 78 (947)
T ss_pred CCchHHHHHHHhh--cCCCCchHhhHHHHHHhhhccccHHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhhcccCC
Confidence 6666666665544 36788899999999999999999766666666665577889999999999999999964 5
Q ss_pred ChhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCC
Q 002148 76 PSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSH 137 (959)
Q Consensus 76 ~~~~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~l~~~ 137 (959)
.+++...+|+.++.++.+ .+..+.-|.+.+++.++.-.+|+.||+ +++|+.+.+++.
T Consensus 79 ~p~e~v~IR~~l~~lii~---s~n~l~iq~a~avs~IA~~DfPdeWpT--L~~DL~~~Ls~~ 135 (947)
T COG5657 79 LPDENVLIRDELFSLIIS---SSNQLQIQNALAVSRIARLDFPDEWPT--LVPDLLSLLSEK 135 (947)
T ss_pred CCccchHHHHHHHHHHHc---ccchHHHHHHHHHHHHHhccCcccchh--HHHHHHhhhccc
Confidence 566677999999999987 444555589999999999999999999 999999999763
No 20
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=2.1e-05 Score=88.26 Aligned_cols=269 Identities=10% Similarity=0.116 Sum_probs=172.2
Q ss_pred CCCcchhhHHHHHHHHhhcccCCc--cccchHHHhhhcc-CCCCcHHHHHHHHHHHHhhhhHH--hh--CCCC---hhhH
Q 002148 447 HNEWRPAEAALFCIRAISTYVSVV--EAEVMPQVMALLP-KLPQQPQLLQTVCLTIGAYSKWF--DA--ASSD---PSIL 516 (959)
Q Consensus 447 ~~~w~~~Ea~l~~l~~l~e~~~~~--~~~~l~~l~~~l~-~lp~~~~v~~t~~~~ig~y~~~l--~~--~p~~---~~~l 516 (959)
+.-|-. +++-|.+|.+++.+++. ....+..+++.+. .+.++|++....||.+..+++-. .. +++. -.+.
T Consensus 418 ~sl~Vk-dTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y 496 (859)
T KOG1241|consen 418 PSLWVK-DTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFY 496 (859)
T ss_pred chhhhc-chHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhH
Confidence 445665 99999999999999854 2345666666654 47789999999999998887522 21 2111 1256
Q ss_pred HHHHHHHHhccCCC----HHHHHHHHHHHHHHHHHhhhh----hhCCHHHHHHHHHHHhhccCCCCCCHh-------hHH
Q 002148 517 ASVLSILTSGMSTS----EDTAAAAALAFRHICDDCRKK----LCGYLDGLYNVYRTAVNGEGSLKVSAE-------DSL 581 (959)
Q Consensus 517 ~~~l~~l~~~l~~~----~~v~~~A~~al~~lc~~c~~~----L~~~~~~ll~~~~~~~~~~~~~~l~~~-------~~~ 581 (959)
+.+++-|+.+-+.. ..++.+|-.||..+.+.|.+. +......++..+.+.++.. .++.+ -+.
T Consensus 497 ~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~---~l~~~dr~q~~eLQs 573 (859)
T KOG1241|consen 497 EAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQ---ILSLADRAQLNELQS 573 (859)
T ss_pred HHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH---hccHhhHHHHHHHHH
Confidence 66777776554432 238889999999999766544 4444555566555555421 12222 234
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCCcccHHHHHHHHh
Q 002148 582 HLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLW 661 (959)
Q Consensus 582 ~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 661 (959)
.+...++.|+..+++ +..+..+.++.-++.-++. ..+. .... .++-.++++...++. .+..++..+.
T Consensus 574 ~Lc~~Lq~i~rk~~~-~~~~~~d~iM~lflri~~s----~~s~---~v~e---~a~laV~tl~~~Lg~--~F~kym~~f~ 640 (859)
T KOG1241|consen 574 LLCNTLQSIIRKVGS-DIREVSDQIMGLFLRIFES----KRSA---VVHE---EAFLAVSTLAESLGK--GFAKYMPAFK 640 (859)
T ss_pred HHHHHHHHHHHHccc-cchhHHHHHHHHHHHHHcC----Cccc---cchH---HHHHHHHHHHHHHhH--hHHHHHHHHH
Confidence 566677888888876 4445555555544433333 2211 0112 234556666655542 3667888899
Q ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCC-----cchhHhHHHHHHHhCCC
Q 002148 662 PIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQ-----PCFLYLSSEVIKIFGSD 733 (959)
Q Consensus 662 ~~l~~il~~~~~~~~i~e~~~~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~-----~~~L~l~~~li~~~~~~ 733 (959)
|.+..-++++.. ..|.-.+..+++.+.|+++..+.|+...+.+.++++.+.... |..|.+.+.+....|.+
T Consensus 641 pyL~~gL~n~~e-~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~ 716 (859)
T KOG1241|consen 641 PYLLMGLSNFQE-YQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGAD 716 (859)
T ss_pred HHHHHHhhcchH-HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHh
Confidence 988888877643 357777888888999999999999999999999888775322 44555555555555544
No 21
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.03 E-value=5.7e-05 Score=86.59 Aligned_cols=663 Identities=14% Similarity=0.158 Sum_probs=322.6
Q ss_pred HHHHhcc-CCCChhHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhcccccc
Q 002148 43 ADNLLHD-ATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDW 121 (959)
Q Consensus 43 ~~~lL~~-~~~~~~~~~faa~~L~~ki~~~w~~l~~~~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~W 121 (959)
...|+.. ++.+-..||.|..=|-+.++++--.|..+.-.-.-.-+++.|.. .+.-|.|---.+++-++.+...++-
T Consensus 7 ~i~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D---~ngEVQnlAVKClg~lvsKvke~~l 83 (1233)
T KOG1824|consen 7 GINLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLED---KNGEVQNLAVKCLGPLVSKVKEDQL 83 (1233)
T ss_pred HHHHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhc---cCcHHHHHHHHHHHHHHhhchHHHH
Confidence 3355542 24455689999999999999998888877666666667777765 4455666555677777776654444
Q ss_pred CCccchHHHHHhcCCCCCc-hh----hHHHHhcccccccccccccCChhHHHHHHHHHHHhHHHHHHHHHHhhhhh----
Q 002148 122 GGGGIVNWLRDEMNSHPEF-VP----GFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN---- 192 (959)
Q Consensus 122 p~~~~~~~l~~~l~~~~~~-~~----~~L~~L~~l~EE~~~~~~~l~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~---- 192 (959)
.. +++.+...+-++..+ .. .+......+|--..+ . +++ .-.+.+.+.+.+.....
T Consensus 84 e~--~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~-~--la~-----------tV~~~~t~~l~~~i~~qe~~s 147 (1233)
T KOG1824|consen 84 ET--IVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSS-F--LAA-----------TVCKRITPKLKQAISKQEDVS 147 (1233)
T ss_pred HH--HHHHHhhhhccchhhhccHHHHHHHHHHhcCCCcccc-c--ccc-----------HHHHHHHHHHHHHhhhcccch
Confidence 44 556665553322211 11 122222333331111 1 111 11223333333333221
Q ss_pred HhHHHHHHHHHHHHh-ccCCCCCcccccchhHHHHHhcCCCCc--hHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHH
Q 002148 193 ELKEQVLEAFASWLR-LKHRIPGSVLASHPLVLTALSSLHSEI--LSEASVNVISELIHYSAAGSSGGATVNMPLIQVIV 269 (959)
Q Consensus 193 ~~~~~~l~~~~sWi~-~~~~~~~~~~~~~~ll~~~~~~L~~~~--~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~ 269 (959)
.+.-.+++.+..... +|.-+|. ....++..+...|+.+. ++..|+-++..+....... -...+++.+.
T Consensus 148 ai~~e~lDil~d~lsr~g~ll~~---fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~------ly~~li~~Ll 218 (1233)
T KOG1824|consen 148 AIKCEVLDILADVLSRFGTLLPN---FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD------LYVELIEHLL 218 (1233)
T ss_pred hhHHHHHHHHHHHHHhhcccCcc---hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHH
Confidence 244444555544332 2211111 11223444445566553 5678888888777654310 1112222222
Q ss_pred HHHHhhHHHhhhcCCCHHHHHHHHHHHHHhhhHHHHHHhcCCchHHHHHHHHHhhc---cCCCcchhhhhHHhHHHhHHH
Q 002148 270 PQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVA---SHPEYDIASMTFNFWHSLQVI 346 (959)
Q Consensus 270 ~~v~~l~~~l~~~~~d~e~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~l~~ll~~~---~~~~~~v~~~~l~fW~~l~~~ 346 (959)
. .+.+.. .....+.+..++.+++..-=.-+. .+...++.++..++ +..+++..+.+++-...|...
T Consensus 219 ~-------~L~~~~-q~~~~rt~Iq~l~~i~r~ag~r~~---~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~r 287 (1233)
T KOG1824|consen 219 K-------GLSNRT-QMSATRTYIQCLAAICRQAGHRFG---SHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRR 287 (1233)
T ss_pred h-------ccCCCC-chHHHHHHHHHHHHHHHHhcchhh---cccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHh
Confidence 2 222221 122344455555554433222222 24446677777777 455788888777766555432
Q ss_pred HhhcccccccCcccchHHHHHHHHhhhHHHHHHHHHHHHhhccCCCCCCCCC-hhhhHHHHHHHHHhhHHHHHhhhccCh
Q 002148 347 LTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLS-LEDLKEFKHTRYAVADVLIDAASVLGG 425 (959)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~d~~~~~-~d~~~~f~~~R~~~~d~l~~~~~il~~ 425 (959)
- .....|+...+++.++.+..|++++...+ +|+.++|.+ +..|
T Consensus 288 c----------------------p~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~e---d~eD----------- 331 (1233)
T KOG1824|consen 288 C----------------------PKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLE---DEED----------- 331 (1233)
T ss_pred C----------------------hhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhh---cccc-----------
Confidence 1 12345677788899999999998654322 222222211 1100
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHhhcccCCccccchHHHhhhcc-----CCCC---cH--HHHHHH
Q 002148 426 DATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLP-----KLPQ---QP--QLLQTV 495 (959)
Q Consensus 426 ~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~l~e~~~~~~~~~l~~l~~~l~-----~lp~---~~--~v~~t~ 495 (959)
+.. =.++ +..++.+|.-+.|+.=|+.++--. ..++++.+.+.+. ++.+ +- .+-.++
T Consensus 332 de~-------~deY---sDDeD~SWkVRRaAaKcl~a~IsS----R~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~y 397 (1233)
T KOG1824|consen 332 DEQ-------DDEY---SDDEDMSWKVRRAAAKCLEAVISS----RLEMLPDFYQTLGPALISRFKEREENVKADVFHAY 397 (1233)
T ss_pred chh-------cccc---ccccchhHHHHHHHHHHHHHHHhc----cHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHH
Confidence 000 0000 112256777777776666554321 1244555554432 1211 10 111222
Q ss_pred HHH---HHhhhhHHhhC--------CCChhhHHHHHHHHHhcc----CCCH-HHHHHHHHHHHHHHHHhhhhhhCCHHHH
Q 002148 496 CLT---IGAYSKWFDAA--------SSDPSILASVLSILTSGM----STSE-DTAAAAALAFRHICDDCRKKLCGYLDGL 559 (959)
Q Consensus 496 ~~~---ig~y~~~l~~~--------p~~~~~l~~~l~~l~~~l----~~~~-~v~~~A~~al~~lc~~c~~~L~~~~~~l 559 (959)
..+ ++...+|+..| |....++..-..++.+.+ ++.. +.+..+-..++.+....+..+.++++.+
T Consensus 398 i~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~sl 477 (1233)
T KOG1824|consen 398 IALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSL 477 (1233)
T ss_pred HHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhccccc
Confidence 222 22223344321 100123433334444333 3221 2344555566777777777777887777
Q ss_pred HHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHh---cCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHH
Q 002148 560 YNVYRTAVNGEGSLKVSAEDSLHLVEALSMVIT---ELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVH 636 (959)
Q Consensus 560 l~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~---~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~ 636 (959)
+..+...++- -+. .--.-+++++.+.+ .-|++...+++..+..|++.....- ..+-...+
T Consensus 478 vpgI~~~l~D-----kSs-ss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~-----------fyKisaEA 540 (1233)
T KOG1824|consen 478 VPGIIYSLND-----KSS-SSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDP-----------FYKISAEA 540 (1233)
T ss_pred chhhhhhcCC-----ccc-hHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCc-----------hHhhhHHH
Confidence 7665555432 111 11223445554443 3466777787777777776443221 11111223
Q ss_pred HHHHHHHhhhcCCccc-----HHHHHHHHhHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 002148 637 IDRFAYIFRYVNHPEA-----VADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLY 711 (959)
Q Consensus 637 l~~l~~~~~~~~~~~~-----~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~~~~~~~~~~~~l~~l~~~l~~~~ 711 (959)
+-....+.+.+..-+| ..+++..+.....+-++.-..|.+|.|++..+.+..+..+|.+....+|..+..+....
T Consensus 541 L~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl 620 (1233)
T KOG1824|consen 541 LLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERL 620 (1233)
T ss_pred HHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 3333334443332111 23344555555555555555688999999999999999999888888888888777666
Q ss_pred hhcCCcchhHhHHHHHHHhCCCc--cchHHHHHHHHHHHHHHHHhhcCcccCCCCCCcHHHHHHHHHHHHhhCCCcccCc
Q 002148 712 QQHQQPCFLYLSSEVIKIFGSDP--SCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPS 789 (959)
Q Consensus 712 ~~~~~~~~L~l~~~li~~~~~~~--~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pDl~~~~f~l~~~~~~~~p~~~l~s 789 (959)
+.. ..-+.....+...++..- +..+.+..++..+. +.+. ..+--+..++...+..+++++-. .++.
T Consensus 621 ~nE--iTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~----~flr-----K~~r~lr~~~l~a~~~L~~~~~~-~~~~ 688 (1233)
T KOG1824|consen 621 GNE--ITRLTAVKALTLIAMSPLDIDLSPVLTEILPELA----SFLR-----KNQRALRLATLTALDKLVKNYSD-SIPA 688 (1233)
T ss_pred hch--hHHHHHHHHHHHHHhccceeehhhhHHHHHHHHH----HHHH-----HHHHHHHHHHHHHHHHHHHHHhc-cccH
Confidence 542 222333344444444321 12344444444332 2222 01112455666666666665532 2332
Q ss_pred CChHHHHHHHHHhccCCCchhHHHHHHHHHHhhc
Q 002148 790 SVFPSLVDCSMIGITVQHREASNSILTFLSDIFD 823 (959)
Q Consensus 790 ~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~li~ 823 (959)
..++.++.=...-+.-.+......++.|+..+..
T Consensus 689 ~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~ 722 (1233)
T KOG1824|consen 689 ELLEAVLVELPPLISESDLHVTQLAVAFLTTLAI 722 (1233)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 2333333222122222344445566666666653
No 22
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=98.91 E-value=3.2e-09 Score=88.58 Aligned_cols=67 Identities=22% Similarity=0.373 Sum_probs=63.4
Q ss_pred HHHHHHHHhcC-hhhHHHHHHHhccCCCChhHHHHHHHHHHhhhhcCCC--------CCChhhHHHHHHHHHHHHH
Q 002148 26 ADRWLQDFQHT-IDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVE--------ELPSEAVRGLQDSLNTLLK 92 (959)
Q Consensus 26 A~~~L~~~q~s-~~aw~~~~~lL~~~~~~~~~~~faa~~L~~ki~~~w~--------~l~~~~~~~lr~~Ll~~l~ 92 (959)
|+++|.+++++ |++|..+.+++.+++.+.++|+||+++|+++|+++|. .++++++..||+.|++.+.
T Consensus 1 AE~~L~~~~~~~p~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l~ 76 (77)
T PF03810_consen 1 AEQQLKQFQKQNPGFWQYLLQILSSNSQDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLLL 76 (77)
T ss_dssp HHHHHHHHHHSCTCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHHc
Confidence 78999999999 8999999999976677899999999999999999999 9999999999999999875
No 23
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=0.00037 Score=77.21 Aligned_cols=573 Identities=13% Similarity=0.133 Sum_probs=290.4
Q ss_pred cchhHHHHHhcCCCCc--hHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhhhcCCCHHHHHHHHHHH
Q 002148 219 SHPLVLTALSSLHSEI--LSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLF 296 (959)
Q Consensus 219 ~~~ll~~~~~~L~~~~--~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~l~~~~~d~e~~~~l~~l~ 296 (959)
.+++++.+.+.|.+++ ..+.|..++..|.+-+....+.+..+ .-+..++|+.+.+... ........-..++
T Consensus 126 wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~--rpl~~mipkfl~f~~h-----~spkiRs~A~~cv 198 (885)
T KOG2023|consen 126 WPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLT--RPLNIMIPKFLQFFKH-----PSPKIRSHAVGCV 198 (885)
T ss_pred chhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhccc--CchHHhHHHHHHHHhC-----CChhHHHHHHhhh
Confidence 4678999999998764 57889999988886543221111111 1233345554432221 1111111111222
Q ss_pred HHhhhHHHHHHhcCCchHHHHHHHHHhhccCCCcchhhhhHHhHHHhHHHHhhcccccccCcccchHHHHHHHHhhhHHH
Q 002148 297 ADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSA 376 (959)
Q Consensus 297 ~~~~~~~~~~l~~~~~~~~~~l~~ll~~~~~~~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (959)
+.+.-.....+. .+...+++.+..+.+.++++|......-...+.+. +...+.|+
T Consensus 199 Nq~i~~~~qal~---~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llev----------------------r~dkl~ph 253 (885)
T KOG2023|consen 199 NQFIIIQTQALY---VHIDKFLEILFALANDEDPEVRKNVCRALVFLLEV----------------------RPDKLVPH 253 (885)
T ss_pred hheeecCcHHHH---HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHh----------------------cHHhcccc
Confidence 222111111110 23567899999999888888876554433334432 23456788
Q ss_pred HHHHHHHHHhhccCCCCCCCCChhhhHHHHHHHHHhhHHHHHhhhccChHHHHHHHHHHHHHhhhhcCCCCCCcchhhHH
Q 002148 377 YESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAA 456 (959)
Q Consensus 377 ~~~Ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~d~l~~~~~il~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~ 456 (959)
+.+++.-++.+.+=+++ +.. . +=.+|=..+++-= .|..++++ ++..+.+.|-+... +.+..-.
T Consensus 254 l~~IveyML~~tqd~dE--~VA---L-EACEFwla~aeqp-i~~~~L~p--~l~kliPvLl~~M~--------Ysd~D~~ 316 (885)
T KOG2023|consen 254 LDNIVEYMLQRTQDVDE--NVA---L-EACEFWLALAEQP-ICKEVLQP--YLDKLIPVLLSGMV--------YSDDDII 316 (885)
T ss_pred hHHHHHHHHHHccCcch--hHH---H-HHHHHHHHHhcCc-CcHHHHHH--HHHHHHHHHHccCc--------cccccHH
Confidence 88888888776543321 111 1 1122333333221 23344442 55555565554321 1111111
Q ss_pred HHHHHHhhc--ccCCccccchHHHhhhc----cCC--C---------C-----cHHHHHHHHHHHHhhhhHHhhCCCChh
Q 002148 457 LFCIRAIST--YVSVVEAEVMPQVMALL----PKL--P---------Q-----QPQLLQTVCLTIGAYSKWFDAASSDPS 514 (959)
Q Consensus 457 l~~l~~l~e--~~~~~~~~~l~~l~~~l----~~l--p---------~-----~~~v~~t~~~~ig~y~~~l~~~p~~~~ 514 (959)
.+....| .++..+.+.-|++...= ... . + .=-+|+...-.++-.+..+...
T Consensus 317 --LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~e----- 389 (885)
T KOG2023|consen 317 --LLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDE----- 389 (885)
T ss_pred --HhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHH-----
Confidence 1111111 12222233334444321 110 0 0 0137887777777777777664
Q ss_pred hHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhc
Q 002148 515 ILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 593 (959)
Q Consensus 515 ~l~~~l~~l~~~l~~~~-~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~ 593 (959)
+++.+++++-..+.+.+ +++.++..|+..+++.|-+-+.||++.++..+.+.++.. ..+-..-...-+.-.|.-+..
T Consensus 390 lL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DK--kplVRsITCWTLsRys~wv~~ 467 (885)
T KOG2023|consen 390 LLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDK--KPLVRSITCWTLSRYSKWVVQ 467 (885)
T ss_pred HHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccC--ccceeeeeeeeHhhhhhhHhc
Confidence 89999999988888765 589999999999999999999999999999999988631 111111111222223333333
Q ss_pred CChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhh-HHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhc
Q 002148 594 LPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLT-VHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRA 672 (959)
Q Consensus 594 ~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~ 672 (959)
.+ ..++ +.|+++.+-+.+-..+ +.+. .+....+++-..- ....++++..+..-+...+++|.
T Consensus 468 ~~---~~~~----f~pvL~~ll~~llD~N--------K~VQEAAcsAfAtleE~A--~~eLVp~l~~IL~~l~~af~kYQ 530 (885)
T KOG2023|consen 468 DS---RDEY----FKPVLEGLLRRLLDSN--------KKVQEAACSAFATLEEEA--GEELVPYLEYILDQLVFAFGKYQ 530 (885)
T ss_pred CC---hHhh----hHHHHHHHHHHHhccc--------HHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHHHHHHh
Confidence 33 2233 3444444333333222 1121 1233444443321 23355566666666666666664
Q ss_pred ccH--HHHHHHHHHHHHHHHHhh------hhhhhhHHHHHHHHHHHHhh--cCCcchhHhHHHHHHHhCCC--ccchHHH
Q 002148 673 WDM--RTMESLCRACKYAVRTSK------RFMGITIGAILEEIQGLYQQ--HQQPCFLYLSSEVIKIFGSD--PSCASYL 740 (959)
Q Consensus 673 ~~~--~i~e~~~~~l~~~~~~~~------~~~~~~l~~l~~~l~~~~~~--~~~~~~L~l~~~li~~~~~~--~~~~~~l 740 (959)
.-. .+.++ ++....+.| .++.-++|++++.-.. ... ...=..|.+++++....|.. +=+.+..
T Consensus 531 ~KNLlILYDA----IgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~-lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy 605 (885)
T KOG2023|consen 531 KKNLLILYDA----IGTLADSVGHALNKPAYIQILMPPLIEKWEL-LSDSDKDLFPLLECLSSIASALGVGFLPYAQPVY 605 (885)
T ss_pred hcceehHHHH----HHHHHHHHHHhcCcHHHHHHhccHHHHHHHh-cCcccchHHHHHHHHHHHHHHHhccccccCHHHH
Confidence 322 22232 222222233 3455567777764321 111 11223578888888888765 1122222
Q ss_pred HHHHHHHHHHHHHhhcCc-c-cCCCCCC--cHHHHHHHHHHHHhh----CCCcccCcCChHHHHHHHHHhccCCCchhHH
Q 002148 741 HNLIEALFKRTTCLLTSI-E-EFTSRPD--VADDCFLLASRCIRY----CPQLFIPSSVFPSLVDCSMIGITVQHREASN 812 (959)
Q Consensus 741 ~~~~~~l~~~~~~~l~~~-~-~~~~~pD--l~~~~f~l~~~~~~~----~p~~~l~s~~l~~~~~~~~~~l~~~~~~~~~ 812 (959)
.. .-.+++++.+.+... + .--+.|| .+-.-+.|++-+.+. .-..+.++++.+-+++| +.-.-++.-.
T Consensus 606 ~R-c~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C----~~D~~peVRQ 680 (885)
T KOG2023|consen 606 QR-CFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQC----LQDEVPEVRQ 680 (885)
T ss_pred HH-HHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHH----hccCChHHHH
Confidence 22 223444444444321 1 1234455 233334555555543 33344456644444444 5556677778
Q ss_pred HHHHHHHHhhcCcCCCCchhhHHHHHHHHhhccHHHHHHHHHHcccCCCCCCcccHHHHHHHH---HHHhhHHHHHHHHH
Q 002148 813 SILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETVTYALLAL---TRAYGVRSLEWAKE 889 (959)
Q Consensus 813 ~~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~l~~~~~~~~~~~~a~il~~l---~~~~~~~~~~wl~~ 889 (959)
+++.++.++...|- +.-.++ ..+++ .-++.++++..++-.....+++ ..+.+.++++|++.
T Consensus 681 S~FALLGDltk~c~-~~v~p~---~~~fl------------~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~~~~v~~ 744 (885)
T KOG2023|consen 681 SAFALLGDLTKACF-EHVIPN---LADFL------------PILGANLNPENISVCNNAIWAIGEIALKMGLKMKQYVSP 744 (885)
T ss_pred HHHHHHHHHHHHHH-Hhccch---HHHHH------------HHHhhcCChhhchHHHHHHHHHHHHHHHhchhhhhHHHH
Confidence 99999998875541 111111 22222 2223456666666555555555 56778888899988
Q ss_pred HHh
Q 002148 890 SVS 892 (959)
Q Consensus 890 ~l~ 892 (959)
++.
T Consensus 745 vl~ 747 (885)
T KOG2023|consen 745 VLE 747 (885)
T ss_pred HHH
Confidence 774
No 24
>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=7.7e-05 Score=80.46 Aligned_cols=402 Identities=14% Similarity=0.057 Sum_probs=226.2
Q ss_pred hHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH-hhhhhhCCHHHHHHHHHHHhhccCC-CCCCHhhHHHHHHHHHHHHh
Q 002148 515 ILASVLSILTSGMSTSEDTAAAAALAFRHICDD-CRKKLCGYLDGLYNVYRTAVNGEGS-LKVSAEDSLHLVEALSMVIT 592 (959)
Q Consensus 515 ~l~~~l~~l~~~l~~~~~v~~~A~~al~~lc~~-c~~~L~~~~~~ll~~~~~~~~~~~~-~~l~~~~~~~l~eai~~vi~ 592 (959)
.+.+|+.-+..+=++.. +..-|-.++..+++. -+..++...+.+++..+++.++... .-++...+..++.++...--
T Consensus 296 ii~kVla~lvn~~sE~~-L~~Da~q~l~~lVe~~~~~~vvv~~e~~~~laeq~~s~~~~l~i~s~p~~~~lmkaLvl~gf 374 (748)
T KOG4541|consen 296 IIGKVLADLVNGESETA-LVPDALQSLFVLVEEANNHPVVVLSESIIKLAEQCLSAEMRLSIFSPPLMEALMKALVLWGF 374 (748)
T ss_pred HHHHHHHHHhcccchhh-hhHHHHHHHHHHHHHhccCCeeeccHHHHHHHHHHhccCCcccccCchHHHHHHHHHHHHHH
Confidence 45556666655545444 788888888888877 4566777788888888888764221 23467789999999987665
Q ss_pred c-CChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCCcccHHHHHHHHhHHHHH---HH
Q 002148 593 E-LPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKA---IF 668 (959)
Q Consensus 593 ~-~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~---il 668 (959)
+ +..++..++....+.|+-+++-..+++.+.. +...+++..|++.+.+....+ .+.....++-++-++.. ++
T Consensus 375 a~~d~e~~~n~~~~~LqpL~~Rf~~~~nq~~q~---~~~~~Ii~~l~~~~g~a~a~q-~d~~~~Lf~fL~~~~~~c~glm 450 (748)
T KOG4541|consen 375 AYLDLEEECNLGSNKLQPLPSRFFTYFNQHNQG---KFVLDIIVRLSLTSGTAYAGQ-KDLQRSLFQFLVLSAYGCRGLM 450 (748)
T ss_pred HHhhHHHHHHHHHhhccccHHHHHHHhcccchh---hHHHHHHHHHHHhcccccccc-chhHHHHHHHHHHHHhhhhhHH
Confidence 5 4445566899999999999999998876531 122344445555554443322 12222223333333333 23
Q ss_pred HhhcccHHHHHHHHHHHHHHHHH----hhhhhh--hhHHHHHHHHHHHHhhcC-----------------CcchhHhHHH
Q 002148 669 DIRAWDMRTMESLCRACKYAVRT----SKRFMG--ITIGAILEEIQGLYQQHQ-----------------QPCFLYLSSE 725 (959)
Q Consensus 669 ~~~~~~~~i~e~~~~~l~~~~~~----~~~~~~--~~l~~l~~~l~~~~~~~~-----------------~~~~L~l~~~ 725 (959)
..+...++++..+...+-..-.. .+..-. .+...++ .+.+.|.+.. ..-++++++.
T Consensus 451 ~s~~~~~~~v~~i~~~~vdvs~k~~~y~~~e~~~~~ly~scl-ql~~~y~~~~~~r~rt~~a~~Ee~~sdl~lvl~lL~n 529 (748)
T KOG4541|consen 451 ASNQYVKDLVAHITSSLVDVSNKSDLYNLAEQPDIILYVSCL-QLERLYGAASATRPRTQRAIYEEGLSDLNLVLRLLEN 529 (748)
T ss_pred HHhhccHHHHHHHHHHHHHhhhhhhhhccccChhHHHHHHHH-HHHHHhhhhcccCcchHHHHHHhhhhHHHHHHHHHHH
Confidence 44455555555544443321110 110000 0111111 1222233211 1224455555
Q ss_pred HHHH-hCCCcc--chH-HHHHHHHHHHHHHHHhhcCcccCCCCCCcHHHHHHHHHHHHhhCCCcccC--cCChHHHHHHH
Q 002148 726 VIKI-FGSDPS--CAS-YLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIP--SSVFPSLVDCS 799 (959)
Q Consensus 726 li~~-~~~~~~--~~~-~l~~~~~~l~~~~~~~l~~~~~~~~~pDl~~~~f~l~~~~~~~~p~~~l~--s~~l~~~~~~~ 799 (959)
..++ |.++.. +.. ...++...=+.-+++++. .+.-..|.+.-+||+++.-+....|..+-+ ..++.++.+|+
T Consensus 530 ~lskdF~~~s~e~~~~~G~a~VV~~gl~~ilplm~--~~lLk~P~lc~~~~~lIty~ce~~pe~la~~~~~l~~sl~qc~ 607 (748)
T KOG4541|consen 530 YLSKDFSSDSIETQSTNGIAQVVYFGLHIILPLMT--LELLKYPKLCFDDVDLITYMCERAPEALASYHYKLKNSLNQCS 607 (748)
T ss_pred HhhhhhhccccccccccCcceEEEeeHHHHHHHHH--HHHHhchHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHhh
Confidence 5444 332211 000 000000000011222232 234568999999999999999999987654 34577778887
Q ss_pred HHhcc-CCCchhHHHHHHHHHHhhcCcCCCCchhhHHHHHHHHhhccHHHHHHHHHHccc-CCCCCCcccHHHHHHHHHH
Q 002148 800 MIGIT-VQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTG-ALPSSRLETVTYALLALTR 877 (959)
Q Consensus 800 ~~~l~-~~~~~~~~~~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~l~~-~~~~~~~~~~a~il~~l~~ 877 (959)
-.+++ ..+.........-+..|-+.++......- -.++.+ .+++++|..+.. ....++....++.|+.+..
T Consensus 608 ~LGMTge~~s~~l~~~~e~v~hfgspankgrcTqn----lafL~~---efL~tvf~~ll~~~~~t~l~s~a~~Aly~LI~ 680 (748)
T KOG4541|consen 608 GLGMTGESHSAGLHTDPEGVFHFGSPANKGRCTQN----LAFLSR---EFLRTVFHFLLFEDYSTDLVSTAADALYPLIL 680 (748)
T ss_pred ccCCccccchHhhccChHhhhcccccccccccccc----HHHHHH---HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 66666 23443334444444444443321111110 122222 345566666643 4456778889999999999
Q ss_pred HhhHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--------cCCCchhhhHHHHHHHHHHH
Q 002148 878 AYGVRSLEWAKESVSLIPLTALAEVERSRFLQALSEAA--------SGVDVNAAMAPVEELSDVCR 935 (959)
Q Consensus 878 ~~~~~~~~wl~~~l~~~p~~~~~~~~~~~f~~~l~~~~--------~~~~~~~f~~~l~~F~~~~r 935 (959)
..|..+.+++.+.++. +..|..|+++-+++.... +++++.+||+.+.+|..-.-
T Consensus 681 ~e~~~y~elvneL~sk----q~np~~~qrLa~Af~~Lt~sn~~psldR~~~~~Frk~le~Fl~~V~ 742 (748)
T KOG4541|consen 681 CEPNLYQELVNELISK----QANPNFKQRLANAFQVLTTSNQLPSLDRLNYQRFRKNLENFLVEVL 742 (748)
T ss_pred hCHHHHHHHHHHHHhh----ccChHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHhh
Confidence 9999999988887643 458888999888766542 23456789999999986443
No 25
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=98.31 E-value=0.00015 Score=79.13 Aligned_cols=200 Identities=17% Similarity=0.232 Sum_probs=114.8
Q ss_pred HHHHHHHhhccCC-CcchhhhhHHhHHHhHHHHhhcccccccCcccchHHHHHHHHhhh--HHHHHHHHH-HHHhhccCC
Q 002148 316 LIVHALLEVASHP-EYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVF--RSAYESLVS-LVSFRVQYP 391 (959)
Q Consensus 316 ~~l~~ll~~~~~~-~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Ll~-~l~~k~~~p 391 (959)
.+.+++......+ .+.+...++.|...+.+... ....| +|++.+++. +++..|.+-
T Consensus 141 ~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~--------------------~~~lf~~~~~L~~Iie~VI~Pnl~~~ 200 (370)
T PF08506_consen 141 AVWNLLTKISQQPKYDILVSKALQFLSSVAESPH--------------------HKNLFENKPHLQQIIEKVIFPNLCLR 200 (370)
T ss_dssp HHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHH--------------------HHTTT-SHHHHHHHHHHTHHHHHS--
T ss_pred HHHHHHHHhhhcccccHHHHHHHHHHHHHHcchh--------------------HHHHhCCHHHHHHHHHHhccCccCCC
Confidence 4455555544444 45566788888654432211 11122 567777775 445555554
Q ss_pred C-CCCCCChhh---------hHHHHHHHHHhhHHHHHhhhccChHHHHHHHHHHHHHhhhh-cCCCCCCcchhhHHHHHH
Q 002148 392 Q-DYQDLSLED---------LKEFKHTRYAVADVLIDAASVLGGDATLKILYIKFVEGVAC-CGNKHNEWRPAEAALFCI 460 (959)
Q Consensus 392 ~-d~~~~~~d~---------~~~f~~~R~~~~d~l~~~~~il~~~~~l~~l~~~l~~~~~~-~~~~~~~w~~~Ea~l~~l 460 (959)
+ |.+-|++|. ..++..-|+...|+++.++.-.+ +.+...+.+.+++.+.+ ..+++.+|+..++|+|.+
T Consensus 201 e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~-~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li 279 (370)
T PF08506_consen 201 EEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFE-KQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLI 279 (370)
T ss_dssp HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHH
Confidence 4 333343322 13566678899999999887655 44555555555554331 012257899999999999
Q ss_pred HHhhcccCCcc------cc--chHHHhhh--cc----CCCCcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhc
Q 002148 461 RAISTYVSVVE------AE--VMPQVMAL--LP----KLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSG 526 (959)
Q Consensus 461 ~~l~e~~~~~~------~~--~l~~l~~~--l~----~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~ 526 (959)
++++....... ++ -+..++.. ++ ....||.++..++..+..|..-+.. +.+..+++.+.++
T Consensus 280 ~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~-----~~l~~~~~~l~~~ 354 (370)
T PF08506_consen 280 GALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPK-----EQLLQIFPLLVNH 354 (370)
T ss_dssp HHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-H-----HHHHHHHHHHHHH
T ss_pred HHHHhhhccccCCcccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCH-----HHHHHHHHHHHHH
Confidence 99987664321 11 12333321 12 2335899999999999998876543 2788899999999
Q ss_pred cCCCH-HHHHHHHHHH
Q 002148 527 MSTSE-DTAAAAALAF 541 (959)
Q Consensus 527 l~~~~-~v~~~A~~al 541 (959)
+++++ -|..-||.|+
T Consensus 355 L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 355 LQSSSYVVHTYAAIAI 370 (370)
T ss_dssp TTSS-HHHHHHHHHHH
T ss_pred hCCCCcchhhhhhhhC
Confidence 99875 3666777664
No 26
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=0.014 Score=71.23 Aligned_cols=180 Identities=16% Similarity=0.140 Sum_probs=116.0
Q ss_pred HhhhHHHHHHHHHHHHhhccCCCCCCCCChhhhHHHHHHHHHhhHHHHHhhhccChH--HH-HHHHHHHHHHhhhhcCCC
Q 002148 370 LQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYAVADVLIDAASVLGGD--AT-LKILYIKFVEGVACCGNK 446 (959)
Q Consensus 370 ~~~~~~~~~~Ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~d~l~~~~~il~~~--~~-l~~l~~~l~~~~~~~~~~ 446 (959)
.+..+|++.+|++.+++ .+|+++. .+.+.+.+++..+=+| .+ =.++.+++.+.+.+. +
T Consensus 989 ~~kl~p~l~kLIPrLyR-Y~yDP~~----------------~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~l-t- 1049 (1702)
T KOG0915|consen 989 GEKLEPYLKKLIPRLYR-YQYDPDK----------------KVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNL-T- 1049 (1702)
T ss_pred HHhhhhHHHHhhHHHhh-hccCCcH----------------HHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhc-c-
Confidence 45788999999998874 7887752 1223344444332211 11 122333444443322 2
Q ss_pred CCCcchhhHHHHHHHHhhcccCCc-cccchHHHhhhccCC-CC-cHHHHHHHHHHHHhhhhHHhh-----CCC-ChhhHH
Q 002148 447 HNEWRPAEAALFCIRAISTYVSVV-EAEVMPQVMALLPKL-PQ-QPQLLQTVCLTIGAYSKWFDA-----ASS-DPSILA 517 (959)
Q Consensus 447 ~~~w~~~Ea~l~~l~~l~e~~~~~-~~~~l~~l~~~l~~l-p~-~~~v~~t~~~~ig~y~~~l~~-----~p~-~~~~l~ 517 (959)
+..||-+||++.++.-+-.+=+.+ ..+.+|++-..+.+. .+ +..||.++=.+....++...+ |+. +.+.+.
T Consensus 1050 ~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~ 1129 (1702)
T KOG0915|consen 1050 SKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALD 1129 (1702)
T ss_pred chhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHH
Confidence 578999999999999887775433 245677776666553 22 566666654443333333322 222 136889
Q ss_pred HHHHHHH-hccCC-CHHHHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHhh
Q 002148 518 SVLSILT-SGMST-SEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVN 568 (959)
Q Consensus 518 ~~l~~l~-~~l~~-~~~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~~~ 568 (959)
.+|++++ .|+.+ -+++++.+-.++.++.+..++.+.||++.++-.+.+..+
T Consensus 1130 ~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s 1182 (1702)
T KOG0915|consen 1130 IILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYS 1182 (1702)
T ss_pred HHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHcc
Confidence 9999987 45443 335999999999999999999999999999988877765
No 27
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.00 E-value=0.005 Score=67.36 Aligned_cols=359 Identities=12% Similarity=0.102 Sum_probs=176.2
Q ss_pred cchHHHhhhccC-CCC------cHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccCCCH-HHHHHHHHHHHHH
Q 002148 473 EVMPQVMALLPK-LPQ------QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHI 544 (959)
Q Consensus 473 ~~l~~l~~~l~~-lp~------~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l 544 (959)
+.+|.++++|.+ -++ +|.....+ ++.-|+..-..+ .+.+++.|+-+.++.++ .=+.+|+.||-++
T Consensus 321 dvlP~lL~LL~~q~ed~~~DdWn~smaA~s--CLqlfaq~~gd~-----i~~pVl~FvEqni~~~~w~nreaavmAfGSv 393 (858)
T COG5215 321 DVLPELLSLLEKQGEDYYGDDWNPSMAASS--CLQLFAQLKGDK-----IMRPVLGFVEQNIRSESWANREAAVMAFGSV 393 (858)
T ss_pred HHHHHHHHHHHhcCCCccccccchhhhHHH--HHHHHHHHhhhH-----hHHHHHHHHHHhccCchhhhHHHHHHHhhhh
Confidence 467889998876 332 34443333 333344433443 78899999999998774 2467788899988
Q ss_pred HH-HhhhhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCC
Q 002148 545 CD-DCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPE 623 (959)
Q Consensus 545 c~-~c~~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~ 623 (959)
-+ .|...+.+++++.+..+.+..+-+ .+ ......-.++|.+...++..--. ..-+.|.++....-+.....
T Consensus 394 m~gp~~~~lT~~V~qalp~i~n~m~D~---~l--~vk~ttAwc~g~iad~va~~i~p---~~Hl~~~vsa~liGl~D~p~ 465 (858)
T COG5215 394 MHGPCEDCLTKIVPQALPGIENEMSDS---CL--WVKSTTAWCFGAIADHVAMIISP---CGHLVLEVSASLIGLMDCPF 465 (858)
T ss_pred hcCccHHHHHhhHHhhhHHHHHhcccc---ee--ehhhHHHHHHHHHHHHHHHhcCc---cccccHHHHHHHhhhhccch
Confidence 75 466667777777777776665421 22 22334445566665554321000 00111221111110110000
Q ss_pred cccccCchhhhHHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 002148 624 ILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAI 703 (959)
Q Consensus 624 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~~~~~~~~~~~~l~~l 703 (959)
... ..........+.++...+. .+.+...++..+...+...-+.-.++...+-.....++.++.-....+.+++..+
T Consensus 466 ~~~-ncsw~~~nlv~h~a~a~~~--~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~ 542 (858)
T COG5215 466 RSI-NCSWRKENLVDHIAKAVRE--VESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGF 542 (858)
T ss_pred HHh-hhHHHHHhHHHhhhhhhcc--ccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 000 0001111112233333322 2445555555555544444333344445555566666665554444445554444
Q ss_pred HHHHHHHHhhc------------------CCcchhHhHHHHHHHhCCCccchHHHHHHHHHHHHHHHHhhcCcccCCCCC
Q 002148 704 LEEIQGLYQQH------------------QQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRP 765 (959)
Q Consensus 704 ~~~l~~~~~~~------------------~~~~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~p 765 (959)
.+++......+ -.+-++.++..+|..++.+ + -
T Consensus 543 ~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~--i----------------------------e 592 (858)
T COG5215 543 YDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRD--I----------------------------E 592 (858)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCC--c----------------------------c
Confidence 44433322211 0122344444444444443 1 1
Q ss_pred CcHHHHHHHHHHHHhhC-CCcccC------c-----------CChHHHHHHHHHhccCCCchhHHHHHHHHHHhhcCcCC
Q 002148 766 DVADDCFLLASRCIRYC-PQLFIP------S-----------SVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKS 827 (959)
Q Consensus 766 Dl~~~~f~l~~~~~~~~-p~~~l~------s-----------~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~li~~~~~ 827 (959)
|+-+...+|+-+++++. |..... + .+..+++.+...++...++....++.+|..++.+...
T Consensus 593 ~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~- 671 (858)
T COG5215 593 DVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLG- 671 (858)
T ss_pred cHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhh-
Confidence 12222444444444432 322210 0 1234555666677778899999999999998875421
Q ss_pred CCchhhHHHHHHHHhhccHHHHHHHHHHccc-CCCCCCcccHHHHHHHHHHHhhHHHHHHHHHHH
Q 002148 828 CKGEEFLSVRDSVIIPRGASITRILIASLTG-ALPSSRLETVTYALLALTRAYGVRSLEWAKESV 891 (959)
Q Consensus 828 ~~~~~~~~~~~~~~~~~g~~lv~~ll~~l~~-~~~~~~~~~~a~il~~l~~~~~~~~~~wl~~~l 891 (959)
..|. .+...++..+..++.. ..+|..-+.+-.++.-++..-+..|..||..++
T Consensus 672 ---~df~--------~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im 725 (858)
T COG5215 672 ---TDFN--------IYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIM 725 (858)
T ss_pred ---hhHH--------HHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 1221 2223344456666644 335555555556666666666666666666543
No 28
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=0.022 Score=63.92 Aligned_cols=165 Identities=16% Similarity=0.283 Sum_probs=115.8
Q ss_pred hHHHHHhhhccChHHHHHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHhhcccCCccccchHHHhhhccC-C-CCcHH
Q 002148 413 ADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPK-L-PQQPQ 490 (959)
Q Consensus 413 ~d~l~~~~~il~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~l~e~~~~~~~~~l~~l~~~l~~-l-p~~~~ 490 (959)
.+.++++...-+...++..+...+.+ ..||...+++..+++++++.+..-+..++.++..+.. + ..||.
T Consensus 240 ~kai~~~~~~~aVK~llpsll~~l~~---------~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~e 310 (569)
T KOG1242|consen 240 AKAIMRCLSAYAVKLLLPSLLGSLLE---------AKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPE 310 (569)
T ss_pred HHHHHHhcCcchhhHhhhhhHHHHHH---------HhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHH
Confidence 34555555554444454444443332 3799999999999999999876555667777776655 3 35999
Q ss_pred HHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccCCCH---------------------------------------
Q 002148 491 LLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE--------------------------------------- 531 (959)
Q Consensus 491 v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~--------------------------------------- 531 (959)
||.++..++-+|.+.+.+ |+ +.+.++.++.++.+|.
T Consensus 311 vr~a~~~~l~~~~svidN-~d----I~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRs 385 (569)
T KOG1242|consen 311 VRKAGIETLLKFGSVIDN-PD----IQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERS 385 (569)
T ss_pred HHHHHHHHHHHHHHhhcc-HH----HHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhcc
Confidence 999999999999987664 32 3333333333333321
Q ss_pred -HHHHHHHHHHHHHHHHh--hhhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCCh
Q 002148 532 -DTAAAAALAFRHICDDC--RKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQ 596 (959)
Q Consensus 532 -~v~~~A~~al~~lc~~c--~~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~ 596 (959)
...+.++..+-++|... ...+.||++.|+.-+...+.. ..++.|.....++|.++..+..
T Consensus 386 t~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d-----~~PEvR~vaarAL~~l~e~~g~ 448 (569)
T KOG1242|consen 386 TSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDD-----AVPEVRAVAARALGALLERLGE 448 (569)
T ss_pred chhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcC-----CChhHHHHHHHHHHHHHHHHHh
Confidence 24567888888888876 678889999999999888753 2578999999999988877543
No 29
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.96 E-value=0.063 Score=60.90 Aligned_cols=180 Identities=11% Similarity=0.137 Sum_probs=110.9
Q ss_pred HHHHHHhhHHHHHhhhccChHHHHHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHhhcccCCccccchHHHhhhccC-
Q 002148 406 KHTRYAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPK- 484 (959)
Q Consensus 406 ~~~R~~~~d~l~~~~~il~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~l~e~~~~~~~~~l~~l~~~l~~- 484 (959)
..||+-+.++...+..-+|...+=+.+.+.+...+..+-..+. .+.-..+.+++.+...+.....+++++|...+..
T Consensus 730 e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqt--t~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~r 807 (1172)
T KOG0213|consen 730 EQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQT--TEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWR 807 (1172)
T ss_pred HHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcc--cchhhhhhhHHHHHHHHhhccccchHHHHHHHHHH
Confidence 3588888888888887777433222222222221111100011 1122567788888877766667889999987643
Q ss_pred CC-CcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHhh-hhhhCCHHHHH
Q 002148 485 LP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMST--SEDTAAAAALAFRHICDDCR-KKLCGYLDGLY 560 (959)
Q Consensus 485 lp-~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~--~~~v~~~A~~al~~lc~~c~-~~L~~~~~~ll 560 (959)
+. ..|.+|..+..++|+.+.-++...+. ..+..+=..+...++. |+ +-..--.|+..|+.... ..+.|=+..|+
T Consensus 808 Lnnksa~vRqqaadlis~la~Vlktc~ee-~~m~~lGvvLyEylgeeypE-vLgsILgAikaI~nvigm~km~pPi~dll 885 (1172)
T KOG0213|consen 808 LNNKSAKVRQQAADLISSLAKVLKTCGEE-KLMGHLGVVLYEYLGEEYPE-VLGSILGAIKAIVNVIGMTKMTPPIKDLL 885 (1172)
T ss_pred hcCCChhHHHHHHHHHHHHHHHHHhccHH-HHHHHhhHHHHHhcCcccHH-HHHHHHHHHHHHHHhccccccCCChhhhc
Confidence 43 26899999999999999988876442 2444444455566765 45 77777777777776543 34566677777
Q ss_pred HHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcC
Q 002148 561 NVYRTAVNGEGSLKVSAEDSLHLVEALSMVITEL 594 (959)
Q Consensus 561 ~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~ 594 (959)
..+..++.+ --...+...+.-+|.|.-.-
T Consensus 886 PrltPILkn-----rheKVqen~IdLvg~Iadrg 914 (1172)
T KOG0213|consen 886 PRLTPILKN-----RHEKVQENCIDLVGTIADRG 914 (1172)
T ss_pred ccchHhhhh-----hHHHHHHHHHHHHHHHHhcC
Confidence 777666654 12445666677777666543
No 30
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.78 E-value=0.15 Score=59.68 Aligned_cols=161 Identities=11% Similarity=0.075 Sum_probs=103.6
Q ss_pred CCcchhhHHHHHHHHhhcccCCccccchHHHhhhccC-CC-CcHHHHHHHHHHHHhhhhHHhh-CCC----ChhhHHHHH
Q 002148 448 NEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPK-LP-QQPQLLQTVCLTIGAYSKWFDA-ASS----DPSILASVL 520 (959)
Q Consensus 448 ~~w~~~Ea~l~~l~~l~e~~~~~~~~~l~~l~~~l~~-lp-~~~~v~~t~~~~ig~y~~~l~~-~p~----~~~~l~~~l 520 (959)
.+--.+++..|...++...-++.-.++++.+...+.. .. +-+++..-++.+.++|.+.+.. +|. ...+..+++
T Consensus 491 ss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~ 570 (1233)
T KOG1824|consen 491 SSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMY 570 (1233)
T ss_pred hHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHH
Confidence 3445688888888888766655545555555444322 11 2467888888888988887754 221 123555555
Q ss_pred HHHHhccC----CCHHHHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCCh
Q 002148 521 SILTSGMS----TSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQ 596 (959)
Q Consensus 521 ~~l~~~l~----~~~~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~ 596 (959)
....+-+. +.+ |+.+|-.++..+....++.+..+++..+..+..-+.+ .-.|+..+.|.+.|..+--.
T Consensus 571 ~~tl~rL~a~d~Dqe-VkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~n-------EiTRl~AvkAlt~Ia~S~l~ 642 (1233)
T KOG1824|consen 571 DCTLQRLKATDSDQE-VKERAISCMGQIIANFGDFLGNELPRTLPILLERLGN-------EITRLTAVKALTLIAMSPLD 642 (1233)
T ss_pred HHHHHHHhcccccHH-HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-------hhHHHHHHHHHHHHHhccce
Confidence 55554443 344 9999999999999988888888888888777665543 34688999999988766322
Q ss_pred HHHHHHHHHhhhhhHHHHHH
Q 002148 597 VDAKKALEMLCLPVVTPLQE 616 (959)
Q Consensus 597 ~~~~~~l~~ll~p~~~~l~~ 616 (959)
-...+.+..++.-+.+-+.+
T Consensus 643 i~l~~~l~~il~~l~~flrK 662 (1233)
T KOG1824|consen 643 IDLSPVLTEILPELASFLRK 662 (1233)
T ss_pred eehhhhHHHHHHHHHHHHHH
Confidence 22234444444444444443
No 31
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=97.51 E-value=0.0033 Score=70.42 Aligned_cols=234 Identities=13% Similarity=0.200 Sum_probs=134.3
Q ss_pred hhhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCccccc
Q 002148 549 RKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKK 628 (959)
Q Consensus 549 ~~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~ 628 (959)
+..+.|++..+++.+..++..++ ..+-.++|+++-+++....+ ...++...+++-+.+.+..+..++.. .
T Consensus 17 ~~di~p~~~~ll~~Lf~~i~~~~-----s~ENeylMk~iMRvl~~~~e-~~~p~~~~il~~L~~il~~v~kNPsn----P 86 (435)
T PF03378_consen 17 KADIQPFAQQLLQNLFALIEKPG-----SAENEYLMKCIMRVLSVLQE-DILPIAVEILQHLTAILKEVSKNPSN----P 86 (435)
T ss_dssp GGGTTCCHHHHHHHHHHHHHTT------STC-HHHHHHHHHHHHHSTT-TTGGGHHHHHHHHHHHHHHHHTS-------H
T ss_pred HHHhhhhHHHHHHHHHHHHhcCC-----CccchHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHhCCCC----c
Confidence 45788999999999999887632 25678999999999988653 33455566666666666666665431 1
Q ss_pred CchhhhHHHHHHHHHhhhcCCcc--cHHHHHHHHhHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 002148 629 HPRDLTVHIDRFAYIFRYVNHPE--AVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEE 706 (959)
Q Consensus 629 ~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~~~~~~~~~~~~l~~l~~~ 706 (959)
...++ ..++++.++|.....+ .+..+.+.++|.+..+++.- +..++|-+++.
T Consensus 87 ~FnHy--lFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~d------------------------V~EF~PYvfQI 140 (435)
T PF03378_consen 87 RFNHY--LFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQD------------------------VQEFIPYVFQI 140 (435)
T ss_dssp HHHHH--HHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-------------------------TTTHHHHHHH
T ss_pred chhhh--HHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHH
Confidence 22233 5799999999876433 34567788999888887652 12333433333
Q ss_pred HHHHHhhcCCcchhHhHHHHHHHhCCCccchHHHHHHHHHHHHHHHHhhcCcccCCCCCCcHHHHHHHHHHHHhhCCCcc
Q 002148 707 IQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLF 786 (959)
Q Consensus 707 l~~~~~~~~~~~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pDl~~~~f~l~~~~~~~~p~~~ 786 (959)
+....+.++. +...+...+++..+. . ....+.++-+.+.-+++..++++.|..+
T Consensus 141 la~Lle~~~~-----------------~~~p~~y~~L~~~Ll-------~--p~lWe~~gniPalvrLL~a~i~k~~~~i 194 (435)
T PF03378_consen 141 LAQLLELRPS-----------------SPLPDAYKQLFPPLL-------S--PALWERRGNIPALVRLLQAYIKKDPSFI 194 (435)
T ss_dssp HHHHHHHSS-------------------S--TTTGGGHHHHT-------S--GGGGGSTTTHHHHHHHHHHHHHHHGGG-
T ss_pred HHHHHHcCCC-----------------CCCcHHHHHHHHHHc-------C--cchhccCCCcCcHHHHHHHHHHhCchhh
Confidence 3222222220 001111222222222 1 2345667788999999999999999988
Q ss_pred cCcCChHHHHHHHHHhccCCCchhHHHHHHHHHHhhcCcCCCCchhhHHHHHHHHhhccHHHHHHHHHHcc
Q 002148 787 IPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLT 857 (959)
Q Consensus 787 l~s~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~l~ 857 (959)
...+.++.++..-...+.....+ ..++..+..++..... +.+.++-+.++..++..+.
T Consensus 195 ~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~-----------~~l~~yl~~I~~lll~RLq 252 (435)
T PF03378_consen 195 VANNQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPP-----------EALEPYLKQIFTLLLTRLQ 252 (435)
T ss_dssp ---S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-H-----------HHHGGGHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCH-----------HHHHHHHHHHHHHHHHHHh
Confidence 77777887777654444332222 3577888888865421 2233444455556666654
No 32
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.32 E-value=0.36 Score=57.02 Aligned_cols=203 Identities=12% Similarity=0.134 Sum_probs=111.5
Q ss_pred CCcchhhHHHHHHHHhhcccCCccccchHHHhhhccCC--CCcHHHHHHHHHHHHhhhhHHhhCCCChhhHHH-HHHHHH
Q 002148 448 NEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKL--PQQPQLLQTVCLTIGAYSKWFDAASSDPSILAS-VLSILT 524 (959)
Q Consensus 448 ~~w~~~Ea~l~~l~~l~e~~~~~~~~~l~~l~~~l~~l--p~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~-~l~~l~ 524 (959)
++-..+-.||-+++.++ . .+..+.++..+.++ ..+|.||++++.++.+.... .|+ .++. +++.+.
T Consensus 91 ~n~~~~~lAL~~l~~i~---~---~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~---~p~---~~~~~~~~~l~ 158 (526)
T PF01602_consen 91 PNPYIRGLALRTLSNIR---T---PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRK---DPD---LVEDELIPKLK 158 (526)
T ss_dssp SSHHHHHHHHHHHHHH----S---HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH---CHC---CHHGGHHHHHH
T ss_pred CCHHHHHHHHhhhhhhc---c---cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhcc---CHH---HHHHHHHHHHh
Confidence 33343455555555554 2 23344444444331 34899999999999887654 666 4555 566666
Q ss_pred hccCCCH-HHHHHHHHHHHHHHHHhhhhh-hCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHH
Q 002148 525 SGMSTSE-DTAAAAALAFRHICDDCRKKL-CGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKA 602 (959)
Q Consensus 525 ~~l~~~~-~v~~~A~~al~~lc~~c~~~L-~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~ 602 (959)
+.+.+++ .|...|..++..+ .+.+.. ...++.++..+.+++.. .++-.+..+++.+..+...-+.+.. .
T Consensus 159 ~lL~d~~~~V~~~a~~~l~~i--~~~~~~~~~~~~~~~~~L~~~l~~-----~~~~~q~~il~~l~~~~~~~~~~~~-~- 229 (526)
T PF01602_consen 159 QLLSDKDPSVVSAALSLLSEI--KCNDDSYKSLIPKLIRILCQLLSD-----PDPWLQIKILRLLRRYAPMEPEDAD-K- 229 (526)
T ss_dssp HHTTHSSHHHHHHHHHHHHHH--HCTHHHHTTHHHHHHHHHHHHHTC-----CSHHHHHHHHHHHTTSTSSSHHHHH-H-
T ss_pred hhccCCcchhHHHHHHHHHHH--ccCcchhhhhHHHHHHHhhhcccc-----cchHHHHHHHHHHHhcccCChhhhh-H-
Confidence 6666543 4888888888888 333322 25566677777666532 4567788888777755444322221 1
Q ss_pred HHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcccHHHHHHHH
Q 002148 603 LEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLC 682 (959)
Q Consensus 603 l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~ 682 (959)
..++.++...+... .....++++..+..... .+ ...+.+.+.+..++. ..++.+.-.+.
T Consensus 230 -~~~i~~l~~~l~s~--------------~~~V~~e~~~~i~~l~~--~~--~~~~~~~~~L~~lL~--s~~~nvr~~~L 288 (526)
T PF01602_consen 230 -NRIIEPLLNLLQSS--------------SPSVVYEAIRLIIKLSP--SP--ELLQKAINPLIKLLS--SSDPNVRYIAL 288 (526)
T ss_dssp -HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHSS--SH--HHHHHHHHHHHHHHT--SSSHHHHHHHH
T ss_pred -HHHHHHHHHHhhcc--------------ccHHHHHHHHHHHHhhc--ch--HHHHhhHHHHHHHhh--cccchhehhHH
Confidence 23344443333311 11223455555443222 11 255667777777765 34555655566
Q ss_pred HHHHHHHHHh
Q 002148 683 RACKYAVRTS 692 (959)
Q Consensus 683 ~~l~~~~~~~ 692 (959)
+.+..+....
T Consensus 289 ~~L~~l~~~~ 298 (526)
T PF01602_consen 289 DSLSQLAQSN 298 (526)
T ss_dssp HHHHHHCCHC
T ss_pred HHHHHhhccc
Confidence 6666554443
No 33
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.28 E-value=0.68 Score=54.62 Aligned_cols=453 Identities=14% Similarity=0.140 Sum_probs=234.0
Q ss_pred CCCHHHHHHHHHHHHHHhc-ChhhHHHHHHHhcc--CCCChhHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHHHHHHHH
Q 002148 17 HPDDAVRMQADRWLQDFQH-TIDAWQVADNLLHD--ATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKK 93 (959)
Q Consensus 17 ~~d~~~r~~A~~~L~~~q~-s~~aw~~~~~lL~~--~~~~~~~~~faa~~L~~ki~~~w~~l~~~~~~~lr~~Ll~~l~~ 93 (959)
++|...|+-+.-++..+.. .++...++..-+.+ .+.++.+|-.|..++-+-. +++-...+-..+...+..
T Consensus 53 s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-------~~~~~~~l~~~v~~ll~~ 125 (526)
T PF01602_consen 53 SKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR-------TPEMAEPLIPDVIKLLSD 125 (526)
T ss_dssp SSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH--------SHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-------ccchhhHHHHHHHHHhcC
Confidence 5688899999999988775 56645555544443 2466778888888887643 344455555555555543
Q ss_pred hcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCC-CCchhhHHHHhcccccccccccccCChhHHHHHHH
Q 002148 94 FHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSH-PEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEK 172 (959)
Q Consensus 94 ~~~~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~l~~~-~~~~~~~L~~L~~l~EE~~~~~~~l~~~~r~~l~~ 172 (959)
+..+||++-+.++..++...+ +.-+.. +++.+.+.+... +.....++.++..+ ...+ +.
T Consensus 126 ---~~~~VRk~A~~~l~~i~~~~p-~~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~~~---------~~---- 185 (526)
T PF01602_consen 126 ---PSPYVRKKAALALLKIYRKDP-DLVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI--KCND---------DS---- 185 (526)
T ss_dssp ---SSHHHHHHHHHHHHHHHHHCH-CCHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH--HCTH---------HH----
T ss_pred ---CchHHHHHHHHHHHHHhccCH-HHHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH--ccCc---------ch----
Confidence 667999999999999987643 232221 355566666433 22334455665555 1000 00
Q ss_pred HHHHhHHHHHHHHHHhhhh--hHhHHHHHHHHHHHHhccCCCCCccccc--chhHHHHHhcCCC--CchHHHHHHHHHHH
Q 002148 173 ELTSQMEVALSTLTACLHI--NELKEQVLEAFASWLRLKHRIPGSVLAS--HPLVLTALSSLHS--EILSEASVNVISEL 246 (959)
Q Consensus 173 ~l~~~~~~vl~~l~~~l~~--~~~~~~~l~~~~sWi~~~~~~~~~~~~~--~~ll~~~~~~L~~--~~~~~~a~~~l~~i 246 (959)
.....+.++..+.+.+.. +-.+..+++++..+.... .-.. ..+++.+...+.+ +.+.-.|+.++..+
T Consensus 186 -~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~------~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l 258 (526)
T PF01602_consen 186 -YKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPME------PEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKL 258 (526)
T ss_dssp -HTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSS------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -hhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCC------hhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 001223333333333232 235566677766544321 0111 2355555555542 22333444444322
Q ss_pred HhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhhhcCCCHHHHHHHHHHHHHhhhHHHHHHhcCCchHHHHHHHHHhhcc
Q 002148 247 IHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVAS 326 (959)
Q Consensus 247 i~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~l~~~~~d~e~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~l~~ll~~~~ 326 (959)
. . ...++..+++.+..+ + . +.|.+......+.+..++..+...+. .....+.+..
T Consensus 259 ~---~---------~~~~~~~~~~~L~~l---L-~-s~~~nvr~~~L~~L~~l~~~~~~~v~--------~~~~~~~~l~ 313 (526)
T PF01602_consen 259 S---P---------SPELLQKAINPLIKL---L-S-SSDPNVRYIALDSLSQLAQSNPPAVF--------NQSLILFFLL 313 (526)
T ss_dssp S---S---------SHHHHHHHHHHHHHH---H-T-SSSHHHHHHHHHHHHHHCCHCHHHHG--------THHHHHHHHH
T ss_pred h---c---------chHHHHhhHHHHHHH---h-h-cccchhehhHHHHHHHhhcccchhhh--------hhhhhhheec
Confidence 2 1 122333333333222 1 2 33443322333455555555533332 1122222333
Q ss_pred -CCCcchhhhhHHhHHHhHHHHhhcccccccCcccchHHHHHHHHhhhHHHHHHHHHHHHhhccCCCCCCCCChhhhHHH
Q 002148 327 -HPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEF 405 (959)
Q Consensus 327 -~~~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~d~~~~~~d~~~~f 405 (959)
.++..+...+++-.+.+.+.- -.+.+ ++.+...+ .+. ++
T Consensus 314 ~~~d~~Ir~~~l~lL~~l~~~~------------------------n~~~I----l~eL~~~l---~~~---~d------ 353 (526)
T PF01602_consen 314 YDDDPSIRKKALDLLYKLANES------------------------NVKEI----LDELLKYL---SEL---SD------ 353 (526)
T ss_dssp CSSSHHHHHHHHHHHHHH--HH------------------------HHHHH----HHHHHHHH---HHC-----------
T ss_pred CCCChhHHHHHHHHHhhccccc------------------------chhhH----HHHHHHHH---Hhc---cc------
Confidence 556777777777655444211 11222 33333322 000 00
Q ss_pred HHHHHHhhHHHHHhhhccC--hHHHHHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHhhcccCCccccchHHHhhhcc
Q 002148 406 KHTRYAVADVLIDAASVLG--GDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLP 483 (959)
Q Consensus 406 ~~~R~~~~d~l~~~~~il~--~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~l~e~~~~~~~~~l~~l~~~l~ 483 (959)
.++|..+...+..++.... .+.+++.+.+.+... +..-.+.+...+..+....+......+..++..+.
T Consensus 354 ~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~---------~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~ 424 (526)
T PF01602_consen 354 PDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEIS---------GDYVSNEIINVIRDLLSNNPELREKILKKLIELLE 424 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCT---------GGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHT
T ss_pred hhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhc---------cccccchHHHHHHHHhhcChhhhHHHHHHHHHHHH
Confidence 1266666666666664433 245666666655531 12224455556666655554443456777887777
Q ss_pred CCCCcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHhhh-hhhCCHHHHHH
Q 002148 484 KLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMST-SEDTAAAAALAFRHICDDCRK-KLCGYLDGLYN 561 (959)
Q Consensus 484 ~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~-~~~v~~~A~~al~~lc~~c~~-~L~~~~~~ll~ 561 (959)
.. .++.++..++|++|.|++.... .+ ..+.++..+...+.. +..++...-.++.++...... ... +.+++
T Consensus 425 ~~-~~~~~~~~~~wilGEy~~~~~~-~~---~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~---~~i~~ 496 (526)
T PF01602_consen 425 DI-SSPEALAAAIWILGEYGELIEN-TE---SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQ---NEILQ 496 (526)
T ss_dssp SS-SSHHHHHHHHHHHHHHCHHHTT-TT---HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHH---HHHHH
T ss_pred Hh-hHHHHHHHHHhhhcccCCcccc-cc---cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhH---HHHHH
Confidence 74 4788999999999999998876 11 344555555544433 334888888899998865432 122 24555
Q ss_pred HHHHHhhccCCCCCCHhhHHHHHHHHH
Q 002148 562 VYRTAVNGEGSLKVSAEDSLHLVEALS 588 (959)
Q Consensus 562 ~~~~~~~~~~~~~l~~~~~~~l~eai~ 588 (959)
.+.+.... + ..+.+.|.+..+-..
T Consensus 497 ~~~~~~~~-~--s~~~evr~Ra~~y~~ 520 (526)
T PF01602_consen 497 FLLSLATE-D--SSDPEVRDRAREYLR 520 (526)
T ss_dssp HHHCHHHH-S---SSHHHHHHHHHHHH
T ss_pred HHHHHhcc-C--CCCHHHHHHHHHHHH
Confidence 55554431 0 134555555554443
No 34
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.17 E-value=0.17 Score=56.04 Aligned_cols=369 Identities=13% Similarity=0.115 Sum_probs=183.0
Q ss_pred CCcchhhHHHHHHHHhhcccCC-ccccchHHHhhhccC-C--CCcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHH
Q 002148 448 NEWRPAEAALFCIRAISTYVSV-VEAEVMPQVMALLPK-L--PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSIL 523 (959)
Q Consensus 448 ~~w~~~Ea~l~~l~~l~e~~~~-~~~~~l~~l~~~l~~-l--p~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l 523 (959)
..+.++-|+.+-+..+-..+.. ++.+.+.++++.+.. + +.|.--|+.++ +|-.+--++-.++...|+..++.-+
T Consensus 12 KlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgL--iGlAA~~iaLg~~~~~Y~~~iv~Pv 89 (675)
T KOG0212|consen 12 KLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGL--IGLAAVAIALGIKDAGYLEKIVPPV 89 (675)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchH--HHHHHHHHHhccccHHHHHHhhHHH
Confidence 4455566666667666555443 345678888886542 2 22222222222 1111111111122223677777777
Q ss_pred HhccCCCH-HHHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHhhccCCCCC---------------------------
Q 002148 524 TSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKV--------------------------- 575 (959)
Q Consensus 524 ~~~l~~~~-~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~~~~~~~~~l--------------------------- 575 (959)
+.++++++ .++.-||.+++++++-|+....+|.+.+.+.+..+....+. ++
T Consensus 90 ~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~-~V~~~aeLLdRLikdIVte~~~tFsL~~~ 168 (675)
T KOG0212|consen 90 LNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQ-NVRGGAELLDRLIKDIVTESASTFSLPEF 168 (675)
T ss_pred HHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCcc-ccccHHHHHHHHHHHhccccccccCHHHH
Confidence 78888775 48999999999999999999999999999998887653210 11
Q ss_pred -----------CHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHh
Q 002148 576 -----------SAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIF 644 (959)
Q Consensus 576 -----------~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 644 (959)
++..|..+++=+- ++-+.|+-++-.|+..+++ ++-+.++.... ..+.+++ .+++.+.
T Consensus 169 ipLL~eriy~~n~~tR~flv~Wl~-~Lds~P~~~m~~yl~~~ld----GLf~~LsD~s~-----eVr~~~~--t~l~~fL 236 (675)
T KOG0212|consen 169 IPLLRERIYVINPMTRQFLVSWLY-VLDSVPDLEMISYLPSLLD----GLFNMLSDSSD-----EVRTLTD--TLLSEFL 236 (675)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHH-HHhcCCcHHHHhcchHHHH----HHHHHhcCCcH-----HHHHHHH--HHHHHHH
Confidence 1122222222221 1122222222222222222 22222221110 0111111 1222222
Q ss_pred hhcCC-cccHHHHHHHHhHHHHHHHHhh-cccHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCCc--chh
Q 002148 645 RYVNH-PEAVADAIQRLWPIFKAIFDIR-AWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQP--CFL 720 (959)
Q Consensus 645 ~~~~~-~~~~~~~~~~~~~~l~~il~~~-~~~~~i~e~~~~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~--~~L 720 (959)
+.+.. |..+ . +.+..+ .+...- ..++.+...+...+...+...|..+.++++.++..++.....++.. ...
T Consensus 237 ~eI~s~P~s~-d-~~~~i~---vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~ 311 (675)
T KOG0212|consen 237 AEIRSSPSSM-D-YDDMIN---VLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEY 311 (675)
T ss_pred HHHhcCcccc-C-cccchh---hccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHH
Confidence 22221 1100 0 001111 111111 2344566666666666777788888888888887776555443321 111
Q ss_pred ----H-hHHHHHHH-hCCCccchHHHHHHHHHHHHHHHHhhcCcccCCCCCCcHHHHHHHHHHHHhhCCCcccCcCChHH
Q 002148 721 ----Y-LSSEVIKI-FGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPS 794 (959)
Q Consensus 721 ----~-l~~~li~~-~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pDl~~~~f~l~~~~~~~~p~~~l~s~~l~~ 794 (959)
. .+..++.. .++. ++ .+..+ +......+ ..+.-|.+-+.++-+..+..+.|+.++. ..+.
T Consensus 312 a~~~n~~l~~l~s~~~~~~-~i--d~~~i----i~vl~~~l-----~~~~~~tri~~L~Wi~~l~~~~p~ql~~--h~~~ 377 (675)
T KOG0212|consen 312 AQMVNGLLLKLVSSERLKE-EI--DYGSI----IEVLTKYL-----SDDREETRIAVLNWIILLYHKAPGQLLV--HNDS 377 (675)
T ss_pred HHHHHHHHHHHHhhhhhcc-cc--chHHH----HHHHHHHh-----hcchHHHHHHHHHHHHHHHhhCcchhhh--hccH
Confidence 1 11111211 1111 10 01111 11111112 2455678888889999999999987764 3355
Q ss_pred HHHHHHHhccCCCchhHHHHHHHHHHhhcCcCCCCchhhHHHHH----------HHHhhccHHHHHHHH
Q 002148 795 LVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRD----------SVIIPRGASITRILI 853 (959)
Q Consensus 795 ~~~~~~~~l~~~~~~~~~~~~~fl~~li~~~~~~~~~~~~~~~~----------~~~~~~g~~lv~~ll 853 (959)
++...+.++.-...+.+.-++..+..+....++ +.++..+. .++...|..|++++=
T Consensus 378 if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~---~~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC 443 (675)
T KOG0212|consen 378 IFLTLLKTLSDRSDEVVLLALSLLASICSSSNS---PNLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLC 443 (675)
T ss_pred HHHHHHHhhcCchhHHHHHHHHHHHHHhcCccc---ccHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Confidence 666666667766667777777777776654332 23332222 234567777777643
No 35
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.57 E-value=2.7 Score=50.32 Aligned_cols=129 Identities=12% Similarity=0.113 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHhccCCCCCcccccchhHHHHHhcCCCCch--HHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHH
Q 002148 195 KEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEIL--SEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQI 272 (959)
Q Consensus 195 ~~~~l~~~~sWi~~~~~~~~~~~~~~~ll~~~~~~L~~~~~--~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v 272 (959)
+..--.|++.-|.- ..|. ....+++.+-..|++++. --.|+-|+.++..........+-..--.+++.++|.+
T Consensus 106 Rvql~~~l~~Ii~~--D~p~---~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~i 180 (1010)
T KOG1991|consen 106 RVQLTACLNTIIKA--DYPE---QWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDI 180 (1010)
T ss_pred HHHHHHHHHHHHhc--CCcc---cchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHH
Confidence 44444455444442 2331 234677777778887753 4578889999886554321111111224667778887
Q ss_pred HhhHHHhhhcC--CCHHHHHHHHHHHHHhhhHHHHHHhcCCchHHHHHHHHHhhccCC
Q 002148 273 MSLKAHLTDSS--KDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHP 328 (959)
Q Consensus 273 ~~l~~~l~~~~--~d~e~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~l~~ll~~~~~~ 328 (959)
.++...+.... +..+..+-++++|-++...-.+.-..+++.+..-+++.+.+...|
T Consensus 181 l~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rp 238 (1010)
T KOG1991|consen 181 LQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRP 238 (1010)
T ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCC
Confidence 76555543221 122455677777776665554444444556777888888887765
No 36
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.53 E-value=3.7 Score=51.48 Aligned_cols=97 Identities=15% Similarity=0.232 Sum_probs=72.6
Q ss_pred CCCcchhhHHHHHHHHhhcccCCccccchHHHhhhccC--CCCcHHHHHHHHHHHHhhhhHHhhCCCC--hhhHHHHHHH
Q 002148 447 HNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPK--LPQQPQLLQTVCLTIGAYSKWFDAASSD--PSILASVLSI 522 (959)
Q Consensus 447 ~~~w~~~Ea~l~~l~~l~e~~~~~~~~~l~~l~~~l~~--lp~~~~v~~t~~~~ig~y~~~l~~~p~~--~~~l~~~l~~ 522 (959)
+..|...-.+-|.++++++...+...+++++++.-|-+ ..+++.|+.+-..+=+.... ++.. ..|+..++.=
T Consensus 968 ~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~----D~k~~vd~y~neIl~e 1043 (1702)
T KOG0915|consen 968 NATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALIT----DSKKVVDEYLNEILDE 1043 (1702)
T ss_pred hchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhcc----ChHHHHHHHHHHHHHH
Confidence 57799999999999999998877777889998888765 33467777765544433321 1111 1478888888
Q ss_pred HHhccCCCH-HHHHHHHHHHHHHHHH
Q 002148 523 LTSGMSTSE-DTAAAAALAFRHICDD 547 (959)
Q Consensus 523 l~~~l~~~~-~v~~~A~~al~~lc~~ 547 (959)
++.++++.+ +|+.++|.|+..+.+.
T Consensus 1044 LL~~lt~kewRVReasclAL~dLl~g 1069 (1702)
T KOG0915|consen 1044 LLVNLTSKEWRVREASCLALADLLQG 1069 (1702)
T ss_pred HHHhccchhHHHHHHHHHHHHHHHcC
Confidence 888898775 5999999999999875
No 37
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.26 E-value=3.5 Score=48.26 Aligned_cols=187 Identities=15% Similarity=0.163 Sum_probs=93.4
Q ss_pred CchHHHHHHHHHhhccCCCcchhhhhHHhHHHhHHHHhhcccccccCcccchHHHHHHHHhhhHHHHHHHHHHHHhhccC
Q 002148 311 SDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQY 390 (959)
Q Consensus 311 ~~~~~~~l~~ll~~~~~~~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~ 390 (959)
+.-+++-=..+++|..+||..+...++|.-+.+...- -.+.+..+|+.-+-. +
T Consensus 345 ~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~------------------------Nv~~mv~eLl~fL~~-~-- 397 (866)
T KOG1062|consen 345 PTAVQRHRSTILECLKDPDVSIKRRALELSYALVNES------------------------NVRVMVKELLEFLES-S-- 397 (866)
T ss_pred cHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccc------------------------cHHHHHHHHHHHHHh-c--
Confidence 3345555677899999999999999999876554311 112222233322211 1
Q ss_pred CCCCCCCChhhhHHHHHHHHHhhHHHHHhhhccCh--HHHHHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHhhcccC
Q 002148 391 PQDYQDLSLEDLKEFKHTRYAVADVLIDAASVLGG--DATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVS 468 (959)
Q Consensus 391 p~d~~~~~~d~~~~f~~~R~~~~d~l~~~~~il~~--~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~l~e~~~ 468 (959)
| ++ ||.++.--+..++.-..| .+.++.+...+..+ .+.-.-++.=-.+.-++++..
T Consensus 398 -------d----~~---~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~a--------G~~V~~dv~~nll~LIa~~~~ 455 (866)
T KOG1062|consen 398 -------D----ED---FKADIASKIAELAEKFAPDKRWHIDTMLKVLKTA--------GDFVNDDVVNNLLRLIANAFQ 455 (866)
T ss_pred -------c----HH---HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhc--------ccccchhhHHHHHHHHhcCCc
Confidence 1 12 232222222222222222 24555555555542 122223333334455555554
Q ss_pred CccccchHHHhhhccC---C-CCcHHHHHHHHHHHHhhhhHHhhC-----CCC--h-hhHHHHHHHHHhccCCCHHHHHH
Q 002148 469 VVEAEVMPQVMALLPK---L-PQQPQLLQTVCLTIGAYSKWFDAA-----SSD--P-SILASVLSILTSGMSTSEDTAAA 536 (959)
Q Consensus 469 ~~~~~~l~~l~~~l~~---l-p~~~~v~~t~~~~ig~y~~~l~~~-----p~~--~-~~l~~~l~~l~~~l~~~~~v~~~ 536 (959)
+.......++...+.. . -+.+.+.+-+.|+||.|.+++... |.. . ..+..+...+.....+. .....
T Consensus 456 e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~-~tk~y 534 (866)
T KOG1062|consen 456 ELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDS-TTKGY 534 (866)
T ss_pred chhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchH-HHHHH
Confidence 4332223333333221 1 135667889999999999988763 211 1 22232223333333333 37888
Q ss_pred HHHHHHHHHHH
Q 002148 537 AALAFRHICDD 547 (959)
Q Consensus 537 A~~al~~lc~~ 547 (959)
|-.|+.|+...
T Consensus 535 al~Al~KLSsr 545 (866)
T KOG1062|consen 535 ALTALLKLSSR 545 (866)
T ss_pred HHHHHHHHHhh
Confidence 88888888764
No 38
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.10 E-value=3.8 Score=47.28 Aligned_cols=217 Identities=14% Similarity=0.191 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCC-CCchhhHHHHhcccccccccc
Q 002148 80 VRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSH-PEFVPGFLELLTVLPEEVFNY 158 (959)
Q Consensus 80 ~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~l~~~-~~~~~~~L~~L~~l~EE~~~~ 158 (959)
..-|-+-++.++.. ..++||.|--..+-.++.+.+. .-.. -++-+.+.+... |........+.-.|+----..
T Consensus 142 ARDLa~Dv~tLL~s---skpYvRKkAIl~lykvFLkYPe-Alr~--~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn 215 (877)
T KOG1059|consen 142 ARDLADDVFTLLNS---SKPYVRKKAILLLYKVFLKYPE-ALRP--CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN 215 (877)
T ss_pred hHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHhhhH-hHhh--hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc
Confidence 34455556666655 5679999988888888887543 2221 356666666532 322222222222221110000
Q ss_pred cccCChhHHHHHHHHHHHhHHHHHHHHHHhhhhhHhHHHHHHHHHHHHhccCCCCCcccccchhHHHHHhcCCCCchHHH
Q 002148 159 KIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEA 238 (959)
Q Consensus 159 ~~~l~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~~~~~~~l~~~~sWi~~~~~~~~~~~~~~~ll~~~~~~L~~~~~~~~ 238 (959)
- -.-+|..+.++...-+ +=+...++|-+.+...+-|.+.. .+++-+.+.+.+ ..
T Consensus 216 y---------------L~LAP~ffkllttSsN-NWmLIKiiKLF~aLtplEPRLgK------KLieplt~li~s----T~ 269 (877)
T KOG1059|consen 216 Y---------------LQLAPLFYKLLVTSSN-NWVLIKLLKLFAALTPLEPRLGK------KLIEPITELMES----TV 269 (877)
T ss_pred c---------------ccccHHHHHHHhccCC-CeehHHHHHHHhhccccCchhhh------hhhhHHHHHHHh----hH
Confidence 0 1124555555443211 12566677777766665332221 122222222221 22
Q ss_pred HH----HHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhhhcCCCHHHHHHHH-HHHHHhhhHHHHHHhcCCch
Q 002148 239 SV----NVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIA-RLFADMGDSYVELIATGSDE 313 (959)
Q Consensus 239 a~----~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~l~~~~~d~e~~~~l~-~l~~~~~~~~~~~l~~~~~~ 313 (959)
|+ +|+..++.-.+.-+ .+++...++..+..+ ..-+..++.+ .+-++ -++..++-.|++ .
T Consensus 270 AmSLlYECvNTVVa~s~s~g---~~d~~asiqLCvqKL---r~fiedsDqN---LKYlgLlam~KI~ktHp~-------~ 333 (877)
T KOG1059|consen 270 AMSLLYECVNTVVAVSMSSG---MSDHSASIQLCVQKL---RIFIEDSDQN---LKYLGLLAMSKILKTHPK-------A 333 (877)
T ss_pred HHHHHHHHHHHheeehhccC---CCCcHHHHHHHHHHH---hhhhhcCCcc---HHHHHHHHHHHHhhhCHH-------H
Confidence 32 44444554433211 124555555444432 1112122222 23232 233444444444 3
Q ss_pred HHHHHHHHHhhccCCCcchhhhhHHhHHHhH
Q 002148 314 SMLIVHALLEVASHPEYDIASMTFNFWHSLQ 344 (959)
Q Consensus 314 ~~~~l~~ll~~~~~~~~~v~~~~l~fW~~l~ 344 (959)
++..-+++++|....|+.|...+++..+.+.
T Consensus 334 Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmV 364 (877)
T KOG1059|consen 334 VQAHKDLILRCLDDKDESIRLRALDLLYGMV 364 (877)
T ss_pred HHHhHHHHHHHhccCCchhHHHHHHHHHHHh
Confidence 4567789999999999999999998876554
No 39
>PTZ00429 beta-adaptin; Provisional
Probab=95.82 E-value=6.4 Score=47.57 Aligned_cols=127 Identities=11% Similarity=0.086 Sum_probs=76.8
Q ss_pred cCCCHHHHHHHHHHHHHHhc-Chh-hHHHHHHHhcc-CCCChhHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHHHHHHH
Q 002148 16 HHPDDAVRMQADRWLQDFQH-TID-AWQVADNLLHD-ATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLK 92 (959)
Q Consensus 16 ~~~d~~~r~~A~~~L~~~q~-s~~-aw~~~~~lL~~-~~~~~~~~~faa~~L~~ki~~~w~~l~~~~~~~lr~~Ll~~l~ 92 (959)
.++|.+.|+-.--||..+-+ .|+ +-..+..+..+ .+.++.+|=.|..++-..-. ..+-+.++..+.
T Consensus 78 ~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~-----------~~i~e~l~~~lk 146 (746)
T PTZ00429 78 PSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV-----------SSVLEYTLEPLR 146 (746)
T ss_pred CCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc-----------HHHHHHHHHHHH
Confidence 45688888888888887765 555 54455555543 13566778777777654211 123334444444
Q ss_pred Hh-cCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCC-CCchhhHHHHhcccccc
Q 002148 93 KF-HKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSH-PEFVPGFLELLTVLPEE 154 (959)
Q Consensus 93 ~~-~~~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~l~~~-~~~~~~~L~~L~~l~EE 154 (959)
+. ...+.+||++-+.+++.++...+ +.-++.++++.+.+.+... +......+..|..+.++
T Consensus 147 k~L~D~~pYVRKtAalai~Kly~~~p-elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 147 RAVADPDPYVRKTAAMGLGKLFHDDM-QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDY 209 (746)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhhCc-ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHh
Confidence 42 23578999999999999876543 2333223566677666543 33445667777776554
No 40
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.58 E-value=0.044 Score=47.22 Aligned_cols=75 Identities=12% Similarity=0.139 Sum_probs=58.3
Q ss_pred HHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHhh
Q 002148 492 LQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVN 568 (959)
Q Consensus 492 ~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~~~ 568 (959)
|+.++..+...+--+..+.. .+++.+++.++.++++++ +|+..||.+|.++++.++..+.++++.+++.+..+..
T Consensus 3 R~ggli~Laa~ai~l~~~~~--~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDIS--KYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSA 78 (97)
T ss_pred hhHHHHHHHHHHHHchHhHH--HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44455555555544444422 488899999999998875 5999999999999999999999999999988888764
No 41
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=95.51 E-value=6.7 Score=45.60 Aligned_cols=131 Identities=15% Similarity=0.229 Sum_probs=81.2
Q ss_pred CcchhhHHHHHHHHhhcccCCccccchHHHhhhccC-CC-CcHHHHHHHHHHHHhhhhHHhhCCCC-hhhH--HHHHHHH
Q 002148 449 EWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPK-LP-QQPQLLQTVCLTIGAYSKWFDAASSD-PSIL--ASVLSIL 523 (959)
Q Consensus 449 ~w~~~Ea~l~~l~~l~e~~~~~~~~~l~~l~~~l~~-lp-~~~~v~~t~~~~ig~y~~~l~~~p~~-~~~l--~~~l~~l 523 (959)
+-..++.++.++..+-+...... ..+++...+.. +. +++.||.-++..++++.+ |++. .+.+ ..++..+
T Consensus 51 ~~e~v~~~~~iL~~~l~~~~~~~--l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~----~~~~~~~~~~~~~l~~~i 124 (503)
T PF10508_consen 51 NREQVELICDILKRLLSALSPDS--LLPQYQPFLQRGLTHPSPKVRRLALKQLGRIAR----HSEGAAQLLVDNELLPLI 124 (503)
T ss_pred ChHHHHHHHHHHHHHHhccCHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc----CCHHHHHHhcCccHHHHH
Confidence 34557888888887776664432 35555555433 22 478999999999999753 1110 0011 2345556
Q ss_pred HhccCCCH-HHHHHHHHHHHHHHHHhhh--hh-hCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhc
Q 002148 524 TSGMSTSE-DTAAAAALAFRHICDDCRK--KL-CGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 593 (959)
Q Consensus 524 ~~~l~~~~-~v~~~A~~al~~lc~~c~~--~L-~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~ 593 (959)
..++.+++ .|...|+.++.++++.-.. .+ .+.. +..+.+++.. -+...|.++++.++.+.+.
T Consensus 125 ~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~---~~~L~~l~~~-----~~~~vR~Rv~el~v~i~~~ 190 (503)
T PF10508_consen 125 IQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNL---LSKLKSLMSQ-----SSDIVRCRVYELLVEIASH 190 (503)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcch---HHHHHHHHhc-----cCHHHHHHHHHHHHHHHhc
Confidence 66667764 4999999999999963211 11 1222 5555555543 2456899999999888655
No 42
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=95.29 E-value=1.1 Score=46.85 Aligned_cols=226 Identities=13% Similarity=0.154 Sum_probs=122.8
Q ss_pred CcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHH
Q 002148 487 QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTA 566 (959)
Q Consensus 487 ~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~ 566 (959)
+++.+|..++.+++..-+-+....=..+-+..++.|+...+.+.. ....|..++..+. .++..-......+++.+.+-
T Consensus 11 ed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~-~~~~~l~gl~~L~-~~~~~~~~~~~~i~~~l~~~ 88 (262)
T PF14500_consen 11 EDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHA-CVQPALKGLLALV-KMKNFSPESAVKILRSLFQN 88 (262)
T ss_pred CCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHh-hHHHHHHHHHHHH-hCcCCChhhHHHHHHHHHHh
Confidence 367788888877776655444321001246677788888887766 5556678888887 33322223345555555443
Q ss_pred hhccCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhh
Q 002148 567 VNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRY 646 (959)
Q Consensus 567 ~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 646 (959)
... ......+|..+|+-+-.++.... ..+..+-..++.++-+.++... .+|-+....+.+..+.+.
T Consensus 89 ~~~---q~~~q~~R~~~~~ll~~l~~~~~-----~~l~~~~~~fv~~~i~~~~gEk------DPRnLl~~F~l~~~i~~~ 154 (262)
T PF14500_consen 89 VDV---QSLPQSTRYAVYQLLDSLLENHR-----EALQSMGDDFVYGFIQLIDGEK------DPRNLLLSFKLLKVILQE 154 (262)
T ss_pred CCh---hhhhHHHHHHHHHHHHHHHHHhH-----HHHHhchhHHHHHHHHHhccCC------CHHHHHHHHHHHHHHHHh
Confidence 322 23567889999988888876632 2334445556666666665432 345555555555655554
Q ss_pred cCCcccHHHHHHHHhHHHHHH----HHhhcccH--HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCCcchh
Q 002148 647 VNHPEAVADAIQRLWPIFKAI----FDIRAWDM--RTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFL 720 (959)
Q Consensus 647 ~~~~~~~~~~~~~~~~~l~~i----l~~~~~~~--~i~e~~~~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~L 720 (959)
..- .++.++++.++..- +..-++|+ ...|...+.++.++.+-..+....+|-+++.+.+..... -...|
T Consensus 155 ~~~----~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~-K~D~L 229 (262)
T PF14500_consen 155 FDI----SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSV-KLDSL 229 (262)
T ss_pred ccc----chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHH-HHHHH
Confidence 442 22233333333221 22223444 234555555665555422222233566666655432221 13457
Q ss_pred HhHHHHHHHhCCC
Q 002148 721 YLSSEVIKIFGSD 733 (959)
Q Consensus 721 ~l~~~li~~~~~~ 733 (959)
.++..++..||..
T Consensus 230 ~tL~~c~~~y~~~ 242 (262)
T PF14500_consen 230 QTLKACIENYGAD 242 (262)
T ss_pred HHHHHHHHHCCHH
Confidence 7888888888754
No 43
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=95.12 E-value=7.6 Score=43.98 Aligned_cols=179 Identities=16% Similarity=0.140 Sum_probs=100.2
Q ss_pred CCcchhhHHHHHHHHhhcccCCcc--ccchHHHhhhccCCCCcHHHHHHHHHHHHhhhh--HHhhCCCChhhHHHHHHHH
Q 002148 448 NEWRPAEAALFCIRAISTYVSVVE--AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSK--WFDAASSDPSILASVLSIL 523 (959)
Q Consensus 448 ~~w~~~Ea~l~~l~~l~e~~~~~~--~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~--~l~~~p~~~~~l~~~l~~l 523 (959)
.++...-+++.+++.+.-..+.++ ++.+..+...+.. ...+..+..++.++.-.++ -+..||. -...+..+
T Consensus 202 ~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~Wi~KaLv~R~~~~----~~~~~~~L 276 (415)
T PF12460_consen 202 EDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISS-SEDSELRPQALEILIWITKALVMRGHPL----ATELLDKL 276 (415)
T ss_pred CChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcc-cCCcchhHHHHHHHHHHHHHHHHcCCch----HHHHHHHH
Confidence 346667888888888887765443 2333333333411 1122233333333332222 2344664 45566667
Q ss_pred HhccCCCHHHHHHHHHHHHHHHHHhhhhhh---------CCHHHHHHHHHH-HhhccCCCCCCHhhHHHHHHHHHHHHhc
Q 002148 524 TSGMSTSEDTAAAAALAFRHICDDCRKKLC---------GYLDGLYNVYRT-AVNGEGSLKVSAEDSLHLVEALSMVITE 593 (959)
Q Consensus 524 ~~~l~~~~~v~~~A~~al~~lc~~c~~~L~---------~~~~~ll~~~~~-~~~~~~~~~l~~~~~~~l~eai~~vi~~ 593 (959)
+..+.+++ +...||++|.-+..+....+. -|-+.++..+.+ ++++. ...+.+.+...+.|+++++..
T Consensus 277 ~~lL~~~~-~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~--~~~~~~~k~~yL~ALs~ll~~ 353 (415)
T PF12460_consen 277 LELLSSPE-LGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGF--KEADDEIKSNYLTALSHLLKN 353 (415)
T ss_pred HHHhCChh-hHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHH--hhcChhhHHHHHHHHHHHHhh
Confidence 77777777 999999999999987443222 122222322222 12110 012334677888999999999
Q ss_pred CChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhh
Q 002148 594 LPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFR 645 (959)
Q Consensus 594 ~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 645 (959)
+|.+-....+..++.-+++.+ +-.+ .......|+++..+..
T Consensus 354 vP~~vl~~~l~~LlPLLlqsL----~~~~-------~~v~~s~L~tL~~~l~ 394 (415)
T PF12460_consen 354 VPKSVLLPELPTLLPLLLQSL----SLPD-------ADVLLSSLETLKMILE 394 (415)
T ss_pred CCHHHHHHHHHHHHHHHHHHh----CCCC-------HHHHHHHHHHHHHHHH
Confidence 997777777888777666554 2111 1223345666666655
No 44
>PTZ00429 beta-adaptin; Provisional
Probab=94.67 E-value=14 Score=44.79 Aligned_cols=103 Identities=13% Similarity=0.125 Sum_probs=60.1
Q ss_pred chHHHhhhccC-C-CCcHHHHHHHHHHHHhhhhHHhhCCCC---hhhHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHH
Q 002148 474 VMPQVMALLPK-L-PQQPQLLQTVCLTIGAYSKWFDAASSD---PSILASVLSILTSGMSTSE-DTAAAAALAFRHICDD 547 (959)
Q Consensus 474 ~l~~l~~~l~~-l-p~~~~v~~t~~~~ig~y~~~l~~~p~~---~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~lc~~ 547 (959)
.++.++..+.+ + ..||.||+++..++.+..+ .+|+. ..+++.+.. .+.+++ .|...|..+|..+++.
T Consensus 137 i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~---~~pelv~~~~~~~~L~~----LL~D~dp~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 137 VLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFH---DDMQLFYQQDFKKDLVE----LLNDNNPVVASNAAAIVCEVNDY 209 (746)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh---hCcccccccchHHHHHH----HhcCCCccHHHHHHHHHHHHHHh
Confidence 44444444433 2 2489999999999998643 34441 023444333 344432 3999999999999987
Q ss_pred hhhhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHH
Q 002148 548 CRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSM 589 (959)
Q Consensus 548 c~~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~ 589 (959)
+...+....+.+.. +...++ ..+.-.|..+++.+..
T Consensus 210 ~~~~l~l~~~~~~~-Ll~~L~-----e~~EW~Qi~IL~lL~~ 245 (746)
T PTZ00429 210 GSEKIESSNEWVNR-LVYHLP-----ECNEWGQLYILELLAA 245 (746)
T ss_pred CchhhHHHHHHHHH-HHHHhh-----cCChHHHHHHHHHHHh
Confidence 65433221222222 222222 2567788888888854
No 45
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=94.36 E-value=13 Score=43.20 Aligned_cols=175 Identities=10% Similarity=0.136 Sum_probs=98.2
Q ss_pred cHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccCCCH--HHHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHH
Q 002148 488 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE--DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRT 565 (959)
Q Consensus 488 ~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~--~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~ 565 (959)
++.||.+....++-.++-|. ++.+++|+-..-+..+ .-+.-.-+...++|.-.+....||+..++.++..
T Consensus 489 deYVRnttarafavvasalg--------ip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~ 560 (1172)
T KOG0213|consen 489 DEYVRNTTARAFAVVASALG--------IPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEH 560 (1172)
T ss_pred cHHHHHHHHHHHHHHHHHhC--------cHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHH
Confidence 68899999998888776554 3344444432222211 1344455667778877777788999999999988
Q ss_pred HhhccCCCCCCHhhHHHHHH--HHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHH
Q 002148 566 AVNGEGSLKVSAEDSLHLVE--ALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYI 643 (959)
Q Consensus 566 ~~~~~~~~~l~~~~~~~l~e--ai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 643 (959)
.+.- .....+.+. +++.+..+..+= -...+..++.|+..++.+. ..+.+...|+.++.+
T Consensus 561 gl~D-------e~qkVR~itAlalsalaeaa~Py-gie~fDsVlkpLwkgir~h-----------rgk~laafLkAigyl 621 (1172)
T KOG0213|consen 561 GLKD-------EQQKVRTITALALSALAEAATPY-GIEQFDSVLKPLWKGIRQH-----------RGKELAAFLKAIGYL 621 (1172)
T ss_pred hhcc-------cchhhhhHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHc-----------cChHHHHHHHHHhhc
Confidence 7642 222233333 344444443221 1145667777776554442 234566678888877
Q ss_pred hhhcCCcccHHHHHHHHhHHHHHHHHhhc-ccHHHHHHHHHHHHHHHHHhh
Q 002148 644 FRYVNHPEAVADAIQRLWPIFKAIFDIRA-WDMRTMESLCRACKYAVRTSK 693 (959)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~l~~il~~~~-~~~~i~e~~~~~l~~~~~~~~ 693 (959)
..-.. ++....+..+++-++ ...|. -|.+...-+..+++++..+-|
T Consensus 622 iplmd-~eya~yyTrevmlil---~rEf~sPDeemkkivLKVv~qcc~t~G 668 (1172)
T KOG0213|consen 622 IPLMD-AEYASYYTREVMLIL---IREFGSPDEEMKKIVLKVVKQCCATDG 668 (1172)
T ss_pred ccccc-HHHHHHhHHHHHHHH---HHhhCCChHHHHHHHHHHHHHHhcccC
Confidence 65332 343333444444433 33343 355555555666666555433
No 46
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=94.06 E-value=15 Score=42.73 Aligned_cols=339 Identities=16% Similarity=0.123 Sum_probs=164.5
Q ss_pred hHHHHHhhhccChHHHHHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHhhcccCC-----ccccchHHHhhhccCCCC
Q 002148 413 ADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSV-----VEAEVMPQVMALLPKLPQ 487 (959)
Q Consensus 413 ~d~l~~~~~il~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~l~e~~~~-----~~~~~l~~l~~~l~~lp~ 487 (959)
.+++..+..-..++.......+.+...+. .++-.-++.++..++.+++.-.. .+++.++.++..+.. .
T Consensus 59 ~~iL~~~l~~~~~~~l~~~~~~~L~~gL~-----h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~--~ 131 (503)
T PF10508_consen 59 CDILKRLLSALSPDSLLPQYQPFLQRGLT-----HPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRD--P 131 (503)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcC--C
Confidence 35555555555555555666666666542 23345566777777766543322 123455555555533 2
Q ss_pred cHHHHHHHHHHHHhhhhHHhhCCCChhhHHHH-----HHHHHhccCC-CHHHHHHHHHHHHHHHHHhhhhhhCCH-HHHH
Q 002148 488 QPQLLQTVCLTIGAYSKWFDAASSDPSILASV-----LSILTSGMST-SEDTAAAAALAFRHICDDCRKKLCGYL-DGLY 560 (959)
Q Consensus 488 ~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~-----l~~l~~~l~~-~~~v~~~A~~al~~lc~~c~~~L~~~~-~~ll 560 (959)
+..|...++.++.+.+. ++. .+..+ +..+.+.+.. .+.++.++...+.+++......+.-.. ..++
T Consensus 132 d~~Va~~A~~~L~~l~~----~~~---~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll 204 (503)
T PF10508_consen 132 DLSVAKAAIKALKKLAS----HPE---GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLL 204 (503)
T ss_pred cHHHHHHHHHHHHHHhC----Cch---hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHH
Confidence 67788888888887764 332 22223 4445455555 333777777788888764433322111 1244
Q ss_pred HHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchh--hhHHHH
Q 002148 561 NVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRD--LTVHID 638 (959)
Q Consensus 561 ~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~--~~~~l~ 638 (959)
+.+...+.. =+.-.+..++|-++.+... ..-..++.+ .-++.++-+.+.....++ .... +-..+.
T Consensus 205 ~~ll~eL~~-----dDiLvqlnalell~~La~~---~~g~~yL~~--~gi~~~L~~~l~~~~~dp---~~~~~~l~g~~~ 271 (503)
T PF10508_consen 205 DLLLKELDS-----DDILVQLNALELLSELAET---PHGLQYLEQ--QGIFDKLSNLLQDSEEDP---RLSSLLLPGRMK 271 (503)
T ss_pred HHHHHHhcC-----ccHHHHHHHHHHHHHHHcC---hhHHHHHHh--CCHHHHHHHHHhccccCC---cccchhhhhHHH
Confidence 444444432 1234578888888888773 222345544 356666666666554322 0111 112234
Q ss_pred HHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhh-cccHHHHHHHHHHHHHHHHH-hhhhhh-----hhHHHHHHHHHHHH
Q 002148 639 RFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIR-AWDMRTMESLCRACKYAVRT-SKRFMG-----ITIGAILEEIQGLY 711 (959)
Q Consensus 639 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~-~~~~~i~e~~~~~l~~~~~~-~~~~~~-----~~l~~l~~~l~~~~ 711 (959)
..+.++.. .|..+...+..+ +..+.... ..|....+.+...++.+-.+ -|..+. +-+..++..+....
T Consensus 272 f~g~la~~--~~~~v~~~~p~~---~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~ 346 (503)
T PF10508_consen 272 FFGNLARV--SPQEVLELYPAF---LERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAI 346 (503)
T ss_pred HHHHHHhc--ChHHHHHHHHHH---HHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHh
Confidence 44444432 232222222222 22333332 35666777777777754332 233222 11222222222222
Q ss_pred hhcC---CcchhHhHHHHHHHhCCCc--cchHHHHHHHHHHHHHHHH-hhcCcccCCCCCCcHHHHHHHHHHHHhhCCC
Q 002148 712 QQHQ---QPCFLYLSSEVIKIFGSDP--SCASYLHNLIEALFKRTTC-LLTSIEEFTSRPDVADDCFLLASRCIRYCPQ 784 (959)
Q Consensus 712 ~~~~---~~~~L~l~~~li~~~~~~~--~~~~~l~~~~~~l~~~~~~-~l~~~~~~~~~pDl~~~~f~l~~~~~~~~p~ 784 (959)
...+ ....|..++.++......+ +........+..+.+.... ++.+ .-....||++.+.|+++..+..+-|.
T Consensus 347 ~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~-~~~qPF~elr~a~~~~l~~l~~~~Wg 424 (503)
T PF10508_consen 347 KSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMS-LLKQPFPELRCAAYRLLQALAAQPWG 424 (503)
T ss_pred cCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHH-HhcCCchHHHHHHHHHHHHHhcCHHH
Confidence 2222 1235666666664332211 1112222233322222111 1111 00134589999999999999886544
No 47
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=94.03 E-value=0.61 Score=40.90 Aligned_cols=92 Identities=11% Similarity=0.153 Sum_probs=72.8
Q ss_pred HHHHHHHHHhccCCCH-----HHHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHH
Q 002148 516 LASVLSILTSGMSTSE-----DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMV 590 (959)
Q Consensus 516 l~~~l~~l~~~l~~~~-----~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~v 590 (959)
+-.+++.+...+++++ .-+.++-+|+..+.+-+++++..+.++++..++..+.. ++-+...+++-..+
T Consensus 9 ~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~-------~eL~~~al~~W~~~ 81 (107)
T smart00802 9 FLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEI-------PELRSLALRCWHVL 81 (107)
T ss_pred HHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-------hhHHHHHHHHHHHH
Confidence 3356666666665543 24889999999999999999999999999999998854 34678889999999
Q ss_pred HhcCChHHHHHHHHHhhhhhHHHH
Q 002148 591 ITELPQVDAKKALEMLCLPVVTPL 614 (959)
Q Consensus 591 i~~~p~~~~~~~l~~ll~p~~~~l 614 (959)
+..+++++..+.+++.+.-+...|
T Consensus 82 i~~L~~~~l~~ll~~~~~~i~~~~ 105 (107)
T smart00802 82 IKTLKEEELGPLLDQIFAAILPLW 105 (107)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHhc
Confidence 999999888887777777666544
No 48
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=93.91 E-value=0.13 Score=44.41 Aligned_cols=91 Identities=11% Similarity=0.142 Sum_probs=66.9
Q ss_pred hhHHHHHHHHhhcccCCccccchHHHhhhccC-CC-CcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccCCC
Q 002148 453 AEAALFCIRAISTYVSVVEAEVMPQVMALLPK-LP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS 530 (959)
Q Consensus 453 ~Ea~l~~l~~l~e~~~~~~~~~l~~l~~~l~~-lp-~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~ 530 (959)
+-++|.++.+++-++...-..+++.|++.+.. +. ++++||+.+|+.+...++..... ...+++.++..+.+...++
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~--~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGE--ILPYFNEIFDALCKLSADP 80 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCC
Confidence 45789999999999987767788888887654 43 48999999999999998877643 1235678888888888887
Q ss_pred HHHHHHHHHHHHHHH
Q 002148 531 EDTAAAAALAFRHIC 545 (959)
Q Consensus 531 ~~v~~~A~~al~~lc 545 (959)
++-...+|..+-++.
T Consensus 81 d~~Vr~~a~~Ld~ll 95 (97)
T PF12755_consen 81 DENVRSAAELLDRLL 95 (97)
T ss_pred chhHHHHHHHHHHHh
Confidence 533444445555443
No 49
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.73 E-value=19 Score=42.67 Aligned_cols=228 Identities=11% Similarity=0.065 Sum_probs=109.3
Q ss_pred hhhHHHHHHHHHHHHhhcCCcchhHhHHHHHHHhCCCcc-chHHHHHHHHHHHHHHHHhhcCcccCCCCCCcHHHHHHHH
Q 002148 697 GITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPS-CASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLA 775 (959)
Q Consensus 697 ~~~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~~~~~~~-~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pDl~~~~f~l~ 775 (959)
.|++-.++..+...+.......==+++..+...++-.++ ..+....++..+.+-+...-.+ .++|-.-.-.|+-+
T Consensus 543 ap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KN----Ps~P~fnHYLFEsi 618 (960)
T KOG1992|consen 543 APFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKN----PSNPQFNHYLFESI 618 (960)
T ss_pred chHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcC----CCCchhHHHHHHHH
Confidence 344444444333333332222223455666666664432 2233333333333322222221 34566666677666
Q ss_pred HHHHhh----CCCcccCcCChHHHHHHHHHhccCCCchhHHHHHHHHHHhhcCcCCCCchhhHHHHHHHHh-------hc
Q 002148 776 SRCIRY----CPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVII-------PR 844 (959)
Q Consensus 776 ~~~~~~----~p~~~l~s~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~li~~~~~~~~~~~~~~~~~~~~-------~~ 844 (959)
..++++ .|+.+-. +-..++.....-+.-+=.+-.-.+++.+..+++.+.+...+.+...+.-++. +.
T Consensus 619 ~~li~~t~~~~~~~vs~--~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~lW~r~gN 696 (960)
T KOG1992|consen 619 GLLIRKTCKANPSAVSS--LEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLWKRSGN 696 (960)
T ss_pred HHHHHHHhccCchHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHHHHhhcCC
Confidence 666653 3443322 1122222211112212233455778888888876443223344433332222 33
Q ss_pred cHHHHHHHHHHcccCCCCCCc--ccHHHHHHHHHHHhh----HHHHHHH-HHHHhhCCCCCCCHHHHHHHHHHHHHHhcC
Q 002148 845 GASITRILIASLTGALPSSRL--ETVTYALLALTRAYG----VRSLEWA-KESVSLIPLTALAEVERSRFLQALSEAASG 917 (959)
Q Consensus 845 g~~lv~~ll~~l~~~~~~~~~--~~~a~il~~l~~~~~----~~~~~wl-~~~l~~~p~~~~~~~~~~~f~~~l~~~~~~ 917 (959)
-+.+|+ ++.++...-+.... +.+..+|.-+.+.-+ ++..=+| .+.++.+|...+.|-.|+-|..-+.+.. +
T Consensus 697 ipalvr-Ll~aflk~g~~~~~~~~~l~~iLGifqkLiaSka~Dh~GF~LLn~i~~~~~~~~~~py~k~i~~llf~Rlq-n 774 (960)
T KOG1992|consen 697 IPALVR-LLQAFLKTGSQIVEAADKLSGILGIFQKLIASKANDHHGFYLLNTIIESIPPNELAPYMKQIFGLLFQRLQ-N 774 (960)
T ss_pred cHHHHH-HHHHHHhcCchhhcccccchhHHHHHHHHhcCcccchhHHHHHHHHHhcCCHhhhhHHHHHHHHHHHHHHh-c
Confidence 466666 55555443333333 345555555544433 3444343 4566777766678888888887666654 4
Q ss_pred CCchhhhHHHHHHHH
Q 002148 918 VDVNAAMAPVEELSD 932 (959)
Q Consensus 918 ~~~~~f~~~l~~F~~ 932 (959)
+...||-+.+--|..
T Consensus 775 skT~kf~k~~~vF~~ 789 (960)
T KOG1992|consen 775 SKTEKFVKSFIVFFS 789 (960)
T ss_pred cCcHHHHHHHHHHHH
Confidence 455566665555554
No 50
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=93.45 E-value=18 Score=41.52 Aligned_cols=361 Identities=12% Similarity=0.083 Sum_probs=188.5
Q ss_pred cHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHH
Q 002148 488 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTA 566 (959)
Q Consensus 488 ~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~ 566 (959)
+..+|....-.-|..+.++..+-- ...+++..++..++.|. .+++..+.++..+.-.....- .+.+...+.++
T Consensus 69 ~~~~~~~~~v~~~~~a~~~~~~d~---~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~---~~~~l~~l~~l 142 (569)
T KOG1242|consen 69 NDNLRNNVVVLEGTLAFHLQIVDP---RPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLS---GEYVLELLLEL 142 (569)
T ss_pred hHHHhhhhHHHHHHHHHhccccCc---chhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccC---HHHHHHHHHHH
Confidence 556777777777777766655422 46678888888888774 377777777776654332211 22233333333
Q ss_pred hhccCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhh
Q 002148 567 VNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRY 646 (959)
Q Consensus 567 ~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 646 (959)
++. -+...|...-.+++.++...+.+...+ .+++..+...+....+. ..+. ...+ ..-+....
T Consensus 143 l~~-----~~~~~~~~aa~~~ag~v~g~~i~~~~~------~~~l~~l~~ai~dk~~~----~~re-~~~~-a~~~~~~~ 205 (569)
T KOG1242|consen 143 LTS-----TKIAERAGAAYGLAGLVNGLGIESLKE------FGFLDNLSKAIIDKKSA----LNRE-AALL-AFEAAQGN 205 (569)
T ss_pred hcc-----ccHHHHhhhhHHHHHHHcCcHHhhhhh------hhHHHHHHHHhcccchh----hcHH-HHHH-HHHHHHHh
Confidence 332 245667777778887777755433332 24445555555443321 1121 1111 11222233
Q ss_pred cCCcccHHHHHHHHhHHHHHHHHhhc-ccHHHHHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHHH-HhhcCCcchhHhH
Q 002148 647 VNHPEAVADAIQRLWPIFKAIFDIRA-WDMRTMESLCRACKYAVRTSKRFM-GITIGAILEEIQGL-YQQHQQPCFLYLS 723 (959)
Q Consensus 647 ~~~~~~~~~~~~~~~~~l~~il~~~~-~~~~i~e~~~~~l~~~~~~~~~~~-~~~l~~l~~~l~~~-~~~~~~~~~L~l~ 723 (959)
++.+ ..+++ .|++..++.++. ....+++++..+.+.+.+++..+- .-++|+++.-+... .+. . ...+.++
T Consensus 206 Lg~~--~EPyi---v~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrt-K-~aslell 278 (569)
T KOG1242|consen 206 LGPP--FEPYI---VPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRT-K-MASLELL 278 (569)
T ss_pred cCCC--CCchH---HhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhh-H-HHHHHHH
Confidence 3322 22233 355556677764 466889999999998888875543 35567766655443 111 1 2334555
Q ss_pred HHHHHHhCCCccchHHHHHHHHHHHHHHHHhhcCcccCCCCCCcHHHHHHHHHHHHhhCCCcccCcCChHHHHHHHHHhc
Q 002148 724 SEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGI 803 (959)
Q Consensus 724 ~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pDl~~~~f~l~~~~~~~~p~~~l~s~~l~~~~~~~~~~l 803 (959)
+.+..+-. ..+...+..++..+...+. +.+|+++++....+.++... +..+.+..++...+.++
T Consensus 279 g~m~~~ap------~qLs~~lp~iiP~lsevl~-----DT~~evr~a~~~~l~~~~sv-----idN~dI~~~ip~Lld~l 342 (569)
T KOG1242|consen 279 GAMADCAP------KQLSLCLPDLIPVLSEVLW-----DTKPEVRKAGIETLLKFGSV-----IDNPDIQKIIPTLLDAL 342 (569)
T ss_pred HHHHHhch------HHHHHHHhHhhHHHHHHHc-----cCCHHHHHHHHHHHHHHHHh-----hccHHHHHHHHHHHHHh
Confidence 54443311 2233334444444444443 67899999998888877763 22233566666666667
Q ss_pred cCCCchhHHHHHHHHHH--hhcCcCCCCchhhHHHHHHHHhhccHHHHHHHHHHcccCCCCCCcccHHHHHHHHHHHh--
Q 002148 804 TVQHREASNSILTFLSD--IFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETVTYALLALTRAY-- 879 (959)
Q Consensus 804 ~~~~~~~~~~~~~fl~~--li~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~l~~~~~~~~~~~~a~il~~l~~~~-- 879 (959)
..+...+ ..+++-+.. |+.... .+.. + -++..+-+++ ..-..+.-+..+.++..+++.-
T Consensus 343 ~dp~~~~-~e~~~~L~~ttFV~~V~---~psL-----a-------lmvpiL~R~l-~eRst~~kr~t~~IidNm~~LveD 405 (569)
T KOG1242|consen 343 ADPSCYT-PECLDSLGATTFVAEVD---APSL-----A-------LMVPILKRGL-AERSTSIKRKTAIIIDNMCKLVED 405 (569)
T ss_pred cCcccch-HHHHHhhcceeeeeeec---chhH-----H-------HHHHHHHHHH-hhccchhhhhHHHHHHHHHHhhcC
Confidence 6554322 223332221 111111 1111 1 1122222222 1222333366777777777765
Q ss_pred hHHHHHHHHHHHhhCCCC--CCCHHHHHHHHHHH
Q 002148 880 GVRSLEWAKESVSLIPLT--ALAEVERSRFLQAL 911 (959)
Q Consensus 880 ~~~~~~wl~~~l~~~p~~--~~~~~~~~~f~~~l 911 (959)
|.....|+...++.+-.. ..-||.|..-.+++
T Consensus 406 p~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL 439 (569)
T KOG1242|consen 406 PKDLAPFLPSLLPGLKENLDDAVPEVRAVAARAL 439 (569)
T ss_pred HHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHH
Confidence 666777777766433211 11366666655555
No 51
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=93.07 E-value=2.4 Score=45.87 Aligned_cols=171 Identities=10% Similarity=0.139 Sum_probs=103.5
Q ss_pred hHHHHHHHHHHHHhccCCCCCccc---ccchhHHHHHhc-C-CCCchHH-HHHHHHHHHHhhhccCCCCCCCCchhHHHH
Q 002148 194 LKEQVLEAFASWLRLKHRIPGSVL---ASHPLVLTALSS-L-HSEILSE-ASVNVISELIHYSAAGSSGGATVNMPLIQV 267 (959)
Q Consensus 194 ~~~~~l~~~~sWi~~~~~~~~~~~---~~~~ll~~~~~~-L-~~~~~~~-~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~ 267 (959)
++..+|+-+..|+.... ..+.+ ..+|+++.++.- - +.|+.++ ..+.++..++.+-.... .+.-..++..
T Consensus 43 iKkeIL~Li~t~i~~~~--~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~---~~~v~~I~~~ 117 (319)
T PF08767_consen 43 IKKEILKLIETFISKAE--DPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELI---QPQVPQILEA 117 (319)
T ss_dssp HHHHHHHHHHHHHHT-S---HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGC---CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhh---hhhHHHHHHH
Confidence 56777888888888531 11111 123444433311 1 3456664 46788888887755321 1122334455
Q ss_pred HHHHHHhhHHHhhhcC-CCHHHHHHHHHHHHHhhhHHHHHHhcCC-chHHHHHHHHHhhccCCCcchhhhhHHhHHHhHH
Q 002148 268 IVPQIMSLKAHLTDSS-KDEEDVKAIARLFADMGDSYVELIATGS-DESMLIVHALLEVASHPEYDIASMTFNFWHSLQV 345 (959)
Q Consensus 268 l~~~v~~l~~~l~~~~-~d~e~~~~l~~l~~~~~~~~~~~l~~~~-~~~~~~l~~ll~~~~~~~~~v~~~~l~fW~~l~~ 345 (959)
++...+ +.+.... +-+|....+.+++..+.+.+...+..-| +.+..+++.++....|++++|++.++.....+.+
T Consensus 118 vf~~Tl---~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~ 194 (319)
T PF08767_consen 118 VFECTL---PMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLN 194 (319)
T ss_dssp HHHHHH---HHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHH---HHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 554332 2332222 2357788899999999998877776543 4577889999999999999999999999888877
Q ss_pred HHhhcccccccCcccchHHHHHHHHhhhHHHHHHHHHHHHh
Q 002148 346 ILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSF 386 (959)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~ 386 (959)
...+. ++ +...+.++.+|..++..++.
T Consensus 195 ~~~~~------~~--------~~~~~F~~~y~~~il~~if~ 221 (319)
T PF08767_consen 195 NVSKT------NP--------EFANQFYQQYYLDILQDIFS 221 (319)
T ss_dssp HHHH-------SH--------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhc------CH--------HHHHHHHHHHHHHHHHHHHH
Confidence 66431 00 23445677777666665554
No 52
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=92.97 E-value=20 Score=40.68 Aligned_cols=57 Identities=14% Similarity=0.242 Sum_probs=48.2
Q ss_pred cHHHHHHHHHHHHhhCCCcccCcCChHHHHHHHHHhccCCCchhHHHHHHHHHHhhcC
Q 002148 767 VADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDL 824 (959)
Q Consensus 767 l~~~~f~l~~~~~~~~p~~~l~s~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~li~~ 824 (959)
....|+.-+..++++.|..++.+ .++.++...+.++..++.+...++++-+..++.-
T Consensus 339 ~k~~yL~ALs~ll~~vP~~vl~~-~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~ 395 (415)
T PF12460_consen 339 IKSNYLTALSHLLKNVPKSVLLP-ELPTLLPLLLQSLSLPDADVLLSSLETLKMILEE 395 (415)
T ss_pred hHHHHHHHHHHHHhhCCHHHHHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence 77888889999999999765532 5788999999999999999999999999999853
No 53
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.94 E-value=1.5 Score=49.23 Aligned_cols=246 Identities=19% Similarity=0.180 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHhhcCCcchhHhHHHHHHHhCCCccchHHHHHHHH---HHHHHHHHhhcCcccCCCCCCcHHHHHHHHH
Q 002148 700 IGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIE---ALFKRTTCLLTSIEEFTSRPDVADDCFLLAS 776 (959)
Q Consensus 700 l~~l~~~l~~~~~~~~~~~~L~l~~~li~~~~~~~~~~~~l~~~~~---~l~~~~~~~l~~~~~~~~~pDl~~~~f~l~~ 776 (959)
.+.++..+....++...++ =..++.++..||+...+.....+.+. +++...|..+.. ..-|-+.++-.-.++.
T Consensus 151 ~~~~L~~l~~lLe~~~l~~-~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~~---~~lhe~At~cic~ll~ 226 (559)
T KOG2081|consen 151 VSKVLVFLSDLLERSDLKS-SDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLSD---DELHEEATECICALLY 226 (559)
T ss_pred HHHHHHHHHHHHhhcCCCh-hhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHccc---chhhHHHHHHHHHHHH
Confidence 3444555555566655553 23457788888887543322222222 234444544431 1112222333333333
Q ss_pred HHHh------hCCCcccCcCChHHHHHHHHHhccCCCchhHHHHHHHHHHhhc---CcCCCCchhhHHHHHHHHhhccHH
Q 002148 777 RCIR------YCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFD---LAKSCKGEEFLSVRDSVIIPRGAS 847 (959)
Q Consensus 777 ~~~~------~~p~~~l~s~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~li~---~~~~~~~~~~~~~~~~~~~~~g~~ 847 (959)
.+.. .++..+..+..+++.++++..+-+.+ ..++.+..++.+.+ .-.+.+..++..++.-++...|..
T Consensus 227 ~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d---~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~h~ 303 (559)
T KOG2081|consen 227 CSLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLD---KNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAGHN 303 (559)
T ss_pred HhhhhhccCchhHHHhccccccchHHHHhhcccCHH---HHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhccCC
Confidence 3332 23344555677899999976664444 45555555555543 111111113333333333322222
Q ss_pred HHHHHHHHcc--cCCCCCCcccHHHHHHHHHHHhhHHHHHHHHHHHhhCCC--CCCCHHHHHHHHHHHHHHhcCCCchhh
Q 002148 848 ITRILIASLT--GALPSSRLETVTYALLALTRAYGVRSLEWAKESVSLIPL--TALAEVERSRFLQALSEAASGVDVNAA 923 (959)
Q Consensus 848 lv~~ll~~l~--~~~~~~~~~~~a~il~~l~~~~~~~~~~wl~~~l~~~p~--~~~~~~~~~~f~~~l~~~~~~~~~~~f 923 (959)
-.+.+-.... +.......-...+..+.+++-+-..+-.|+..-+ .+|. ..++++..+-|-..+....-.+|.--.
T Consensus 304 ~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~-qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~i 382 (559)
T KOG2081|consen 304 DTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHV-QLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFI 382 (559)
T ss_pred chhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHc-cCCCccccCccchhHHHHHHHHHHHHHHHHHHH
Confidence 2221111111 1122222222333444445555555555555433 4454 223444433332222111111122112
Q ss_pred hHHHHHHHHHHHhhhh---HHHHHHhccCCCCc
Q 002148 924 MAPVEELSDVCRRNRT---VQEIVQGALKPLEL 953 (959)
Q Consensus 924 ~~~l~~F~~~~r~~~~---~~~~~~~~~~~~~~ 953 (959)
-.....|...|++.++ .-+.++-+|+|.+.
T Consensus 383 igs~e~lk~~~~~l~e~~~~We~~EAaLF~l~~ 415 (559)
T KOG2081|consen 383 IGSDECLKQMYIRLKENNASWEEVEAALFILRA 415 (559)
T ss_pred hCcHHHHHHHHHHHccCCCchHHHHHHHHHHHH
Confidence 2222344457777776 77777777777654
No 54
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=92.92 E-value=3.5 Score=46.51 Aligned_cols=288 Identities=13% Similarity=0.158 Sum_probs=143.9
Q ss_pred hHHHHHHHHHhccCCCHH-HHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhc
Q 002148 515 ILASVLSILTSGMSTSED-TAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 593 (959)
Q Consensus 515 ~l~~~l~~l~~~l~~~~~-v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~ 593 (959)
++..++..++..+..+.. =-....+++++++..+++.+.|+.+.+++.+..++.......-++.=-.+++|++|.+|..
T Consensus 23 ~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~ 102 (435)
T PF03378_consen 23 FAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRF 102 (435)
T ss_dssp CHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHh
Confidence 456666666665543210 1234567789999888888889888877777665542100012344567999999999987
Q ss_pred CChHH--HHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhh
Q 002148 594 LPQVD--AKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIR 671 (959)
Q Consensus 594 ~p~~~--~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~ 671 (959)
..... ....++..+-|. +..++++... +. --+ ....++.+.+... ..++.+.+.+++|.+..- ..|
T Consensus 103 ~~~~~~~~v~~~E~~L~P~---f~~ILq~dV~----EF-~PY--vfQIla~Lle~~~-~~~~p~~y~~L~~~Ll~p-~lW 170 (435)
T PF03378_consen 103 VCEADPEAVSQFEEALFPP---FQEILQQDVQ----EF-IPY--VFQILAQLLELRP-SSPLPDAYKQLFPPLLSP-ALW 170 (435)
T ss_dssp S-GGGHH---HHHHHHHHH---HHHHHHTT-T----TT-HHH--HHHHHHHHHHHSS---S--TTTGGGHHHHTSG-GGG
T ss_pred ccCCChhHHHHHHHHHHHH---HHHHHHHHHH----HH-HHH--HHHHHHHHHHcCC-CCCCcHHHHHHHHHHcCc-chh
Confidence 65322 223344444443 3566665431 11 112 3456666666543 233444445555544321 223
Q ss_pred cccHHHHHHHHHHHHHHHHHhhhhhh--hhHHHHHHHHHHHHhh-cCCcchhHhHHHHHHHhCCCccchHHHHHHHHHHH
Q 002148 672 AWDMRTMESLCRACKYAVRTSKRFMG--ITIGAILEEIQGLYQQ-HQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALF 748 (959)
Q Consensus 672 ~~~~~i~e~~~~~l~~~~~~~~~~~~--~~l~~l~~~l~~~~~~-~~~~~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~ 748 (959)
..... +-++.+++...++.-+.++. +.+.+++......... .......+++..++..+..+ .+.+-+.+++.-++
T Consensus 171 e~~gn-iPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D~~gF~LL~~iv~~~p~~-~l~~yl~~I~~lll 248 (435)
T PF03378_consen 171 ERRGN-IPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKANDHYGFDLLESIVENLPPE-ALEPYLKQIFTLLL 248 (435)
T ss_dssp GSTTT-HHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHS-HH-HHGGGHHHHHHHHH
T ss_pred ccCCC-cCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHH
Confidence 32222 24455566655554333332 3344444433222221 22234568999999887643 13344444444433
Q ss_pred HHHHHhhcCcccCCCCCCcHHHHHHHHHHHH-hhCCCcccC------cCChHHHHHH-HHHhccC-CCchhHHHHHHHHH
Q 002148 749 KRTTCLLTSIEEFTSRPDVADDCFLLASRCI-RYCPQLFIP------SSVFPSLVDC-SMIGITV-QHREASNSILTFLS 819 (959)
Q Consensus 749 ~~~~~~l~~~~~~~~~pDl~~~~f~l~~~~~-~~~p~~~l~------s~~l~~~~~~-~~~~l~~-~~~~~~~~~~~fl~ 819 (959)
+-+++ ...+..++.|..|++-+. ++.|..++. +.++..++.- .+..+.. ..+..-|.+.--++
T Consensus 249 ----~RLq~----skT~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGlt 320 (435)
T PF03378_consen 249 ----TRLQS----SKTEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLT 320 (435)
T ss_dssp ----HHHHH----C--HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHH
T ss_pred ----HHHhh----CCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHH
Confidence 33431 233457777777766655 455655542 3456666642 3444432 33344566666677
Q ss_pred HhhcC
Q 002148 820 DIFDL 824 (959)
Q Consensus 820 ~li~~ 824 (959)
+++..
T Consensus 321 kLL~e 325 (435)
T PF03378_consen 321 KLLCE 325 (435)
T ss_dssp HHHHS
T ss_pred HHHhc
Confidence 77743
No 55
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=92.41 E-value=53 Score=44.29 Aligned_cols=387 Identities=12% Similarity=0.074 Sum_probs=199.2
Q ss_pred cchhhHHHHHHHHhhcccCCc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhhhhHHhhCCCC---hhhHHHHHH
Q 002148 450 WRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSD---PSILASVLS 521 (959)
Q Consensus 450 w~~~Ea~l~~l~~l~e~~~~~-----~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~---~~~l~~~l~ 521 (959)
-...+.+++.++.++.+-+.. +...+|.++++|.+ .++.++..++++++..+..-.+.... ...+++++.
T Consensus 460 ~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s--~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~ 537 (2102)
T PLN03200 460 EQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLET--GSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLW 537 (2102)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHH
Confidence 455678899999998655432 23568888887753 36889999999999887521110000 014555555
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCChHHHHH
Q 002148 522 ILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKK 601 (959)
Q Consensus 522 ~l~~~l~~~~~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~ 601 (959)
.+-.+ +++ .+..|+.++.+++........ +. +..++.. -+...+..+++++|.+++....++...
T Consensus 538 LL~sg--d~~-~q~~Aa~AL~nLi~~~d~~~I---~~----Lv~LLls-----dd~~~~~~aL~vLgnIlsl~~~~d~~~ 602 (2102)
T PLN03200 538 LLKNG--GPK-GQEIAAKTLTKLVRTADAATI---SQ----LTALLLG-----DLPESKVHVLDVLGHVLSVASLEDLVR 602 (2102)
T ss_pred HHhCC--CHH-HHHHHHHHHHHHHhccchhHH---HH----HHHHhcC-----CChhHHHHHHHHHHHHHhhcchhHHHH
Confidence 55432 334 899999999999765333211 22 2233432 235677788999999988766544221
Q ss_pred HHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcccHHHHHHH
Q 002148 602 ALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESL 681 (959)
Q Consensus 602 ~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~ 681 (959)
.. ....--+..+.+++...+ .+....+...|+.++.+-.. ..-.-+.....|-+-.++. .++.++...+
T Consensus 603 ~g-~~~~ggL~~Lv~LL~sgs-------~~ikk~Aa~iLsnL~a~~~d-~~~avv~agaIpPLV~LLs--s~~~~v~keA 671 (2102)
T PLN03200 603 EG-SAANDALRTLIQLLSSSK-------EETQEKAASVLADIFSSRQD-LCESLATDEIINPCIKLLT--NNTEAVATQS 671 (2102)
T ss_pred Hh-hhccccHHHHHHHHcCCC-------HHHHHHHHHHHHHHhcCChH-HHHHHHHcCCHHHHHHHHh--cCChHHHHHH
Confidence 11 001123344455555432 11223345667777663221 1111223445555555554 3455677778
Q ss_pred HHHHHHHHHHh--hh--h-h-hhhHHHHHHHHHHHHhhcCCcchhHhHHHHHHHhCCCccchHHHHHHHHHHHHHHHHhh
Q 002148 682 CRACKYAVRTS--KR--F-M-GITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLL 755 (959)
Q Consensus 682 ~~~l~~~~~~~--~~--~-~-~~~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l 755 (959)
+.++..+.+.. +. . + ...+|++++.+.. .......-+-..+..+-.+.+....+.+ ...+.....++
T Consensus 672 A~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~-----~d~~v~e~Al~ALanLl~~~e~~~ei~~--~~~I~~Lv~lL 744 (2102)
T PLN03200 672 ARALAALSRSIKENRKVSYAAEDAIKPLIKLAKS-----SSIEVAEQAVCALANLLSDPEVAAEALA--EDIILPLTRVL 744 (2102)
T ss_pred HHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhC-----CChHHHHHHHHHHHHHHcCchHHHHHHh--cCcHHHHHHHH
Confidence 88877766532 11 1 1 1356777776532 2222221111122222222211111111 11223333444
Q ss_pred cCcccCCCCCCcHHHHHHHHHHHHhhCCCc-cc-C----cCChHHHHHHHHHhccCCCchhHHH--HHHHHHHhhcCcC-
Q 002148 756 TSIEEFTSRPDVADDCFLLASRCIRYCPQL-FI-P----SSVFPSLVDCSMIGITVQHREASNS--ILTFLSDIFDLAK- 826 (959)
Q Consensus 756 ~~~~~~~~~pDl~~~~f~l~~~~~~~~p~~-~l-~----s~~l~~~~~~~~~~l~~~~~~~~~~--~~~fl~~li~~~~- 826 (959)
+ ...|+..+.--.-+..+.+++|.- .+ . ...+..++.+ ++..+.+.... ++..+..+...+.
T Consensus 745 r-----~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~----L~~~~~~~~~~~~al~~l~~l~~~~~~ 815 (2102)
T PLN03200 745 R-----EGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDL----LNSTDLDSSATSEALEALALLARTKGG 815 (2102)
T ss_pred H-----hCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHH----HhcCCcchhhHHHHHHHHHHHHhhccc
Confidence 4 345777787777777777777632 11 1 1223333333 44555555444 7777777775322
Q ss_pred -CCCchhhHHHHHHHHhhccHHHHHHHHHHcccCCCCCCcccHHHHHHHHHHHhhHHHHHHH
Q 002148 827 -SCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETVTYALLALTRAYGVRSLEWA 887 (959)
Q Consensus 827 -~~~~~~~~~~~~~~~~~~g~~lv~~ll~~l~~~~~~~~~~~~a~il~~l~~~~~~~~~~wl 887 (959)
....++|...++. ......||+ ++ ..-++...++..++|-++++-.|.-+...+
T Consensus 816 ~~~~~~~~~~~~e~--p~~l~~l~~----~l-~~~~p~~~~kai~il~~~~~~~~~~~~~~~ 870 (2102)
T PLN03200 816 ANFSHPPWAVLAEV--PSSLEPLVR----CL-AEGHPLVQDKAIEILSRLCRDQPVVLGDLI 870 (2102)
T ss_pred CCCCCCchhhHHhc--cCchHHHHH----HH-HcCChHHHHHHHHHHHHHhccChhHHHHHH
Confidence 1122455322111 011222333 33 334677788888888888877775554444
No 56
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=92.26 E-value=1.8 Score=38.19 Aligned_cols=90 Identities=9% Similarity=0.068 Sum_probs=71.1
Q ss_pred HHHHHHHhccCC-----CHHHHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHh
Q 002148 518 SVLSILTSGMST-----SEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVIT 592 (959)
Q Consensus 518 ~~l~~l~~~l~~-----~~~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~ 592 (959)
.+++.+...+++ +..-+.+|-+++..+.+-+++++.++.++++..++..+.. ++-+...+++-...+.
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~-------~~l~~~al~~W~~fi~ 83 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEI-------PELREEALSCWNCFIK 83 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC-------hhhHHHHHHHHHHHHH
Confidence 455555444443 2236889999999999999999999999999999998753 2567788999999999
Q ss_pred cCChHHHHHHHHHhhhhhHHHH
Q 002148 593 ELPQVDAKKALEMLCLPVVTPL 614 (959)
Q Consensus 593 ~~p~~~~~~~l~~ll~p~~~~l 614 (959)
.+++++..+.+++.+..++..|
T Consensus 84 ~L~~~~l~~ll~~~~~~l~~~~ 105 (107)
T PF08064_consen 84 TLDEEDLGPLLDQIFAILLPLW 105 (107)
T ss_pred HCCHHHHHHHHHHHHHHHHHhc
Confidence 9999888888888777776554
No 57
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=92.02 E-value=1.3 Score=45.43 Aligned_cols=137 Identities=14% Similarity=0.232 Sum_probs=82.9
Q ss_pred CCCcchhhHHHHHHHHhhccc-CCccc-cc---hHHHhhhcc-CCCC-cHHHHHHHHHHHHhhhhHHhhCCCChhhHHHH
Q 002148 447 HNEWRPAEAALFCIRAISTYV-SVVEA-EV---MPQVMALLP-KLPQ-QPQLLQTVCLTIGAYSKWFDAASSDPSILASV 519 (959)
Q Consensus 447 ~~~w~~~Ea~l~~l~~l~e~~-~~~~~-~~---l~~l~~~l~-~lp~-~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~ 519 (959)
+.+|.....++--+..+..+- +.... .+ +..++..+. .+.+ ...|..++|.+++.++.-+..+-+ .+++.+
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~--~~~~~~ 95 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFE--PYADIL 95 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGH--HHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHH--HHHHHH
Confidence 578999999998888887655 22211 11 222222222 2332 457999999999999998887632 467888
Q ss_pred HHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhhhCCHHHH-HHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCC
Q 002148 520 LSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGL-YNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELP 595 (959)
Q Consensus 520 l~~l~~~l~~~~-~v~~~A~~al~~lc~~c~~~L~~~~~~l-l~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p 595 (959)
++.++..++++. -++..|..++..+|+.|. +.+.+ ...+...... -+...|....+.+..++...+
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~-----Kn~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKS-----KNPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT------S-HHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHHHHHcc
Confidence 888888877764 378888889999999876 11222 3333333332 357889999999999999887
No 58
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=91.97 E-value=0.19 Score=38.24 Aligned_cols=54 Identities=19% Similarity=0.278 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccCCCH-HHHHHHHHHHHHH
Q 002148 489 PQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHI 544 (959)
Q Consensus 489 ~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~l 544 (959)
|.+|..+++.||+.+.-....- ..+++.+++.+...+.+++ +|+..|+.||.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~--~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELL--QPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHH--HHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHH--HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 6799999999998543111110 1378889999998887653 5999999998754
No 59
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=91.80 E-value=0.37 Score=43.46 Aligned_cols=95 Identities=15% Similarity=0.166 Sum_probs=62.7
Q ss_pred CCcchhhHHHHHHHHhhcccCCcc-----ccchHHHhhhccCCCCcHHHHHHHHHHHHhhhhHHhhCCCChhhH-HHHHH
Q 002148 448 NEWRPAEAALFCIRAISTYVSVVE-----AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSIL-ASVLS 521 (959)
Q Consensus 448 ~~w~~~Ea~l~~l~~l~e~~~~~~-----~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l-~~~l~ 521 (959)
.+|...+.++++++.++...+... ...++.+++.+.. .++.++..+++++++++..-...+. ... ..+++
T Consensus 19 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--~~~~v~~~a~~~L~~l~~~~~~~~~--~~~~~g~l~ 94 (120)
T cd00020 19 SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS--EDEEVVKAALWALRNLAAGPEDNKL--IVLEAGGVP 94 (120)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC--CCHHHHHHHHHHHHHHccCcHHHHH--HHHHCCChH
Confidence 458999999999999998754331 2456666665543 4789999999999999764322111 011 11344
Q ss_pred HHHhccCCC-HHHHHHHHHHHHHHHH
Q 002148 522 ILTSGMSTS-EDTAAAAALAFRHICD 546 (959)
Q Consensus 522 ~l~~~l~~~-~~v~~~A~~al~~lc~ 546 (959)
.+.+.+++. .+++..|+.+|..+|+
T Consensus 95 ~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 95 KLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 444444443 2489999999999874
No 60
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=91.65 E-value=22 Score=40.52 Aligned_cols=89 Identities=11% Similarity=0.100 Sum_probs=54.6
Q ss_pred hHHHHHHHHHhccCCCH-HHHHHHHHHHHHHH---HHhhh-hhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHH
Q 002148 515 ILASVLSILTSGMSTSE-DTAAAAALAFRHIC---DDCRK-KLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSM 589 (959)
Q Consensus 515 ~l~~~l~~l~~~l~~~~-~v~~~A~~al~~lc---~~c~~-~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~ 589 (959)
+++++++-++.-+.++. .++.+|++....++ +.|.. .+..++..++ ...+.. -.++.--.++.||++
T Consensus 601 ~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iL---yE~lge-----~ypEvLgsil~Ai~~ 672 (975)
T COG5181 601 HLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNIL---YENLGE-----DYPEVLGSILKAICS 672 (975)
T ss_pred chHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHH---HHhcCc-----ccHHHHHHHHHHHHH
Confidence 68888888888887642 38899988766655 45653 2223333322 222221 235666678889998
Q ss_pred HHhcCChHHHHHHHHHhhhhhH
Q 002148 590 VITELPQVDAKKALEMLCLPVV 611 (959)
Q Consensus 590 vi~~~p~~~~~~~l~~ll~p~~ 611 (959)
|.+...-..+++.+..++..+.
T Consensus 673 I~sv~~~~~mqpPi~~ilP~lt 694 (975)
T COG5181 673 IYSVHRFRSMQPPISGILPSLT 694 (975)
T ss_pred HhhhhcccccCCchhhcccccc
Confidence 8887665555555666554443
No 61
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.57 E-value=54 Score=40.80 Aligned_cols=183 Identities=13% Similarity=0.147 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhh----cCC--cchhHhHH--HHHHHhCCCccchHHHHHHHHHH
Q 002148 676 RTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQ----HQQ--PCFLYLSS--EVIKIFGSDPSCASYLHNLIEAL 747 (959)
Q Consensus 676 ~i~e~~~~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~----~~~--~~~L~l~~--~li~~~~~~~~~~~~l~~~~~~l 747 (959)
...-..+.+++.++...+.....++|.++.-++-.+.. .+. -..|..++ +....+|.++ ....+.. +
T Consensus 712 ~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~lne----f 786 (1176)
T KOG1248|consen 712 PAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP-ASAILNE----F 786 (1176)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc-hHHHHHH----H
Confidence 34455678888888888866666666665533322221 111 12356666 4444555554 1122222 2
Q ss_pred HHHHHHhhcCcccCCCCCCcHHHHHHHHHHHHhhCCCcccCcCChHHHHHHHHHhccCCCchhHHHHHHHHHHhhcCcCC
Q 002148 748 FKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKS 827 (959)
Q Consensus 748 ~~~~~~~l~~~~~~~~~pDl~~~~f~l~~~~~~~~p~~~l~s~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~li~~~~~ 827 (959)
+..+...+. .+-+-++..-+-.++.++... ..++..+.+..+++.+...+....++..++|+.|+..++... +
T Consensus 787 l~~Isagl~-----gd~~~~~as~Ivai~~il~e~-~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~-p 859 (1176)
T KOG1248|consen 787 LSIISAGLV-----GDSTRVVASDIVAITHILQEF-KNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKF-P 859 (1176)
T ss_pred HHHHHhhhc-----ccHHHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcC-C
Confidence 222221111 111222222122223333222 235556678889998888899999999999999999998532 1
Q ss_pred CCchhhHHHHHHHHhhccHHHHHHHHHHcccCCCCCCcccHHHHHHHHHHHhhH
Q 002148 828 CKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETVTYALLALTRAYGV 881 (959)
Q Consensus 828 ~~~~~~~~~~~~~~~~~g~~lv~~ll~~l~~~~~~~~~~~~a~il~~l~~~~~~ 881 (959)
...+..+-+.|+..++. +.....+...-.+--+|-.|.++|+.
T Consensus 860 ----------e~~l~~~~~~LL~sll~-ls~d~k~~~r~Kvr~LlekLirkfg~ 902 (1176)
T KOG1248|consen 860 ----------EECLSPHLEELLPSLLA-LSHDHKIKVRKKVRLLLEKLIRKFGA 902 (1176)
T ss_pred ----------HHHHhhhHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHhCH
Confidence 13444555666666664 44444455555666777788888874
No 62
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=90.26 E-value=0.12 Score=39.21 Aligned_cols=52 Identities=13% Similarity=0.216 Sum_probs=40.4
Q ss_pred cchhhHHHHHHHHhhcccCCccccchHHHhhhccC-CC-CcHHHHHHHHHHHHh
Q 002148 450 WRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPK-LP-QQPQLLQTVCLTIGA 501 (959)
Q Consensus 450 w~~~Ea~l~~l~~l~e~~~~~~~~~l~~l~~~l~~-lp-~~~~v~~t~~~~ig~ 501 (959)
|+-.++++++++.+++.......++++.++..|.. +. +++.||.++++.+|+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 77789999999998877766555677777776543 32 467999999999996
No 63
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.66 E-value=56 Score=38.31 Aligned_cols=97 Identities=13% Similarity=0.182 Sum_probs=61.0
Q ss_pred HHHHhhcccCCcc-ccchHHHhhhccCCCCcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccCCCH-HHHHH
Q 002148 459 CIRAISTYVSVVE-AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAA 536 (959)
Q Consensus 459 ~l~~l~e~~~~~~-~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~ 536 (959)
+++.+|.-++++- .+.-+.++.++.. +-|.+|+-++.++.+. |-.+|+ -+.++++.+..-+.+|+ .|+.+
T Consensus 129 AL~GLS~fvTpdLARDLa~Dv~tLL~s--skpYvRKkAIl~lykv---FLkYPe---Alr~~FprL~EkLeDpDp~V~SA 200 (877)
T KOG1059|consen 129 ALSGLSCIVTPDLARDLADDVFTLLNS--SKPYVRKKAILLLYKV---FLKYPE---ALRPCFPRLVEKLEDPDPSVVSA 200 (877)
T ss_pred eecccccccCchhhHHHHHHHHHHHhc--CchHHHHHHHHHHHHH---HHhhhH---hHhhhHHHHHHhccCCCchHHHH
Confidence 4445555555442 3455667766654 2578998888777553 455676 78899999999998875 37777
Q ss_pred HHHHHHHHHHHhhhhhhCCHHHHHHHH
Q 002148 537 AALAFRHICDDCRKKLCGYLDGLYNVY 563 (959)
Q Consensus 537 A~~al~~lc~~c~~~L~~~~~~ll~~~ 563 (959)
|..-+-.+++.-.+.-.+..|.|+..+
T Consensus 201 AV~VICELArKnPknyL~LAP~ffkll 227 (877)
T KOG1059|consen 201 AVSVICELARKNPQNYLQLAPLFYKLL 227 (877)
T ss_pred HHHHHHHHHhhCCcccccccHHHHHHH
Confidence 776655555544444444445554443
No 64
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.99 E-value=33 Score=39.02 Aligned_cols=251 Identities=14% Similarity=0.169 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHHHHHHhhhh---hh--CCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHH--H
Q 002148 532 DTAAAAALAFRHICDDCRKK---LC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKAL--E 604 (959)
Q Consensus 532 ~v~~~A~~al~~lc~~c~~~---L~--~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l--~ 604 (959)
+++-.||.|+.+++.....+ ++ .-++.|+. ++.. -+.+.++..+-|+|.|+..-|. ...+. .
T Consensus 125 ~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~----Ll~s-----~~~~v~eQavWALgNIagds~~--~Rd~vl~~ 193 (514)
T KOG0166|consen 125 TLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQ----LLSS-----PSADVREQAVWALGNIAGDSPD--CRDYVLSC 193 (514)
T ss_pred hHHHHHHHHHHHHhcCchhhccccccCCchHHHHH----HhcC-----CcHHHHHHHHHHHhccccCChH--HHHHHHhh
Confidence 38999999999999754432 22 22333333 3332 2467788899999999877543 33222 2
Q ss_pred HhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcccHHHHHHHHHH
Q 002148 605 MLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRA 684 (959)
Q Consensus 605 ~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~ 684 (959)
..+.|++.. +.... ....+....=+++.+.++-+ |.|-...+..+.|++..++ +..|+++..-+|-+
T Consensus 194 g~l~pLl~~----l~~~~------~~~~lRn~tW~LsNlcrgk~-P~P~~~~v~~iLp~L~~ll--~~~D~~Vl~Da~WA 260 (514)
T KOG0166|consen 194 GALDPLLRL----LNKSD------KLSMLRNATWTLSNLCRGKN-PSPPFDVVAPILPALLRLL--HSTDEEVLTDACWA 260 (514)
T ss_pred cchHHHHHH----hcccc------chHHHHHHHHHHHHHHcCCC-CCCcHHHHHHHHHHHHHHH--hcCCHHHHHHHHHH
Confidence 334555432 22211 00111223346777777654 7777777888888888776 45788888888888
Q ss_pred HHHHHHHhhhhhh-----hhHHHHHHHHHHHHhhcCC---cchhHhHHHHHHHhCCCccchHHHHHHHHHHHHHHHHhhc
Q 002148 685 CKYAVRTSKRFMG-----ITIGAILEEIQGLYQQHQQ---PCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLT 756 (959)
Q Consensus 685 l~~~~~~~~~~~~-----~~l~~l~~~l~~~~~~~~~---~~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~ 756 (959)
+++......+.+. ..+|.+++. +..... ...|..++.++ .|.+......+.. ..+.....++.
T Consensus 261 lsyLsdg~ne~iq~vi~~gvv~~LV~l----L~~~~~~v~~PaLRaiGNIv--tG~d~QTq~vi~~---~~L~~l~~ll~ 331 (514)
T KOG0166|consen 261 LSYLTDGSNEKIQMVIDAGVVPRLVDL----LGHSSPKVVTPALRAIGNIV--TGSDEQTQVVINS---GALPVLSNLLS 331 (514)
T ss_pred HHHHhcCChHHHHHHHHccchHHHHHH----HcCCCcccccHHHhhcccee--eccHHHHHHHHhc---ChHHHHHHHhc
Confidence 8865543222211 223444443 332221 22344444433 2444322211111 11222222232
Q ss_pred CcccCCCCCC-cHHHHHHHHHHHHhhCCC---cccCcCChHHHHHHHHHhccCCCchhHHHHHHHHHHhhcC
Q 002148 757 SIEEFTSRPD-VADDCFLLASRCIRYCPQ---LFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDL 824 (959)
Q Consensus 757 ~~~~~~~~pD-l~~~~f~l~~~~~~~~p~---~~l~s~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~li~~ 824 (959)
..+.+ +.++-.=.++.+....+. .++..++++.++. .+...+....|-|.-.++++...
T Consensus 332 -----~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~----~l~~~ef~~rKEAawaIsN~ts~ 394 (514)
T KOG0166|consen 332 -----SSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLIN----LLQTAEFDIRKEAAWAISNLTSS 394 (514)
T ss_pred -----cCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHH----HHhccchHHHHHHHHHHHhhccc
Confidence 12333 666666677777665442 2334444444444 46667778888888877776644
No 65
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=87.91 E-value=0.58 Score=30.56 Aligned_cols=29 Identities=28% Similarity=0.430 Sum_probs=22.4
Q ss_pred HHHHHhccCCCH-HHHHHHHHHHHHHHHHh
Q 002148 520 LSILTSGMSTSE-DTAAAAALAFRHICDDC 548 (959)
Q Consensus 520 l~~l~~~l~~~~-~v~~~A~~al~~lc~~c 548 (959)
++.+++.+.+++ +|+.+|+.+|..|++.|
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 556667777764 59999999999999865
No 66
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=86.40 E-value=72 Score=37.11 Aligned_cols=227 Identities=11% Similarity=0.123 Sum_probs=107.9
Q ss_pred hHHHhhhccCCCCcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHhhhh-h
Q 002148 475 MPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMST-SEDTAAAAALAFRHICDDCRKK-L 552 (959)
Q Consensus 475 l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~-~~~v~~~A~~al~~lc~~c~~~-L 552 (959)
+..++.++.++. ...+....+.-+.+...++..+|. ++..++..+...=.. ...++..|-..+..+|...... +
T Consensus 243 l~s~l~Ll~~~t-~te~~~~~L~~l~~l~~~~~~f~k---~lk~liK~~V~vWstge~~~rv~Afl~l~~l~~~~~~~~l 318 (661)
T KOG2256|consen 243 LGSSLHLLNQLT-DTEVLAFTLRHLTVLVPFLATFPK---LLKKLIKAVVHVWSTGEESLRVLAFLCLIDLCRKFKSTCL 318 (661)
T ss_pred hHHHHHHHHHcc-hHHHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHHheeeccCCcchhhHHHHHHHHHHHHhhhHHH
Confidence 334444444443 455666666777777788888886 666666665532221 2237777777788888765543 2
Q ss_pred hCCHHHHHHHHHHHhhccCCCCCCHhhHHHHH-HHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCccccc-Cc
Q 002148 553 CGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLV-EALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKK-HP 630 (959)
Q Consensus 553 ~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~-eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~-~~ 630 (959)
.+-+- +.|...+.+..-.+.........+ -+..-+. .+.....+...-.++.++.-.|.+++........+. ..
T Consensus 319 ~~vlk---~mY~afv~nsk~~~~~tl~~i~Fl~~slvEL~-~ld~~~~Yq~aF~yIrQLAihLRnam~~k~K~s~~~VYn 394 (661)
T KOG2256|consen 319 DPVLK---TMYLAFVRNSKFVTVNTLPLINFLQNSLVELL-GLDLQVSYQHAFVYIRQLAIHLRNAMITKNKESVQSVYN 394 (661)
T ss_pred HHHHH---HHHHHHHHhCCCCCCcccchhHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 23222 222222221100011122222111 1222122 234444444444556666666677666543211000 00
Q ss_pred hhhhHHHHHHHHHhh-hcCCcccHHHHHHHHhHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 002148 631 RDLTVHIDRFAYIFR-YVNHPEAVADAIQRLWPIFKAIFDIRA--WDMRTMESLCRACKYAVRTSKRFMGITIGAILEEI 707 (959)
Q Consensus 631 ~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~~~~l~~il~~~~--~~~~i~e~~~~~l~~~~~~~~~~~~~~l~~l~~~l 707 (959)
=+++..++.-..++. ..+...++.+..--+.+++.-+....+ ..-+++=.+++.+.++.++.|.++ |..|.+++.+
T Consensus 395 Wqfi~cL~lW~rvisf~~~~~s~lq~LvYpLvQvi~GvirLipT~qy~PLRlhcir~Li~Ls~ssg~fI-Pi~~ll~Eml 473 (661)
T KOG2256|consen 395 WQYVHCLDLWLRVISFANGSASQLQPLVYPLVQVILGVIRLIPTPQYYPLRLHCIRSLISLSRSSGTFI-PLSPLLVEML 473 (661)
T ss_pred HHHHHHHHHHHHHHHHhhccHhhhhhhhhHHHHHHHHHhhhcCcccchhHHHHHHHHHHHHHhhcCcee-ecHHHHHHHH
Confidence 123344444444444 222212222211112222222222222 344677778888888888777775 6677777776
Q ss_pred HHH
Q 002148 708 QGL 710 (959)
Q Consensus 708 ~~~ 710 (959)
-..
T Consensus 474 ~~~ 476 (661)
T KOG2256|consen 474 KSV 476 (661)
T ss_pred HHh
Confidence 544
No 67
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=85.26 E-value=87 Score=37.03 Aligned_cols=83 Identities=14% Similarity=0.279 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhh
Q 002148 531 EDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPV 610 (959)
Q Consensus 531 ~~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~ 610 (959)
+.++.+.-..+.++..-.++.+.|+++.+++.+.+- .+..+....+--+.-+|.... ....+.+++++.|+
T Consensus 711 E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~s--------~d~kEmvdfl~flsQLihkfk-~~~~~ilnqmlppl 781 (980)
T KOG2021|consen 711 ENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLSS--------TDLKEMVDFLGFLSQLIHKFK-TDCYQILNQMLPPL 781 (980)
T ss_pred chhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHhc--------CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 337777777889999989999999999998876442 233445555555555565554 56678999999999
Q ss_pred HHHHHHHHhcCC
Q 002148 611 VTPLQEIINQGP 622 (959)
Q Consensus 611 ~~~l~~~~~~~~ 622 (959)
+.++-+++....
T Consensus 782 l~rIfsvi~r~a 793 (980)
T KOG2021|consen 782 LNRIFSVIERIA 793 (980)
T ss_pred HHHHHHHhcccC
Confidence 999999988543
No 68
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=85.20 E-value=1e+02 Score=38.68 Aligned_cols=124 Identities=13% Similarity=0.104 Sum_probs=71.5
Q ss_pred hHHHhhhccCCCCcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccCCCHH-HHHHHHHHHHHHHHHhhhhhh
Q 002148 475 MPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSED-TAAAAALAFRHICDDCRKKLC 553 (959)
Q Consensus 475 l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~~-v~~~A~~al~~lc~~c~~~L~ 553 (959)
++-++.+|..- +.++|.++++-|.-.+-|+.... .=+-+++++.+++.++++ |...|-.+|.-+|+.- .+.
T Consensus 619 LshLiTfLNDk--Dw~LR~aFfdsI~gvsi~VG~rs----~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~--ll~ 690 (1431)
T KOG1240|consen 619 LSHLITFLNDK--DWRLRGAFFDSIVGVSIFVGWRS----VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLG--LLR 690 (1431)
T ss_pred HHHHHHHhcCc--cHHHHHHHHhhccceEEEEeeee----HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhc--ccc
Confidence 34444444332 57778888777765555554431 233566778889998864 8888888888888742 111
Q ss_pred -CCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhH
Q 002148 554 -GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVV 611 (959)
Q Consensus 554 -~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~ 611 (959)
+++-.|++....++-.| +.-.|..++.-|..+...+...+..-.+..++.|.+
T Consensus 691 K~~v~~i~~~v~PlL~hP-----N~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl 744 (1431)
T KOG1240|consen 691 KPAVKDILQDVLPLLCHP-----NLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFL 744 (1431)
T ss_pred hHHHHHHHHhhhhheeCc-----hHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhh
Confidence 45555666555555432 234566666666666666665544322333444444
No 69
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=84.69 E-value=20 Score=35.08 Aligned_cols=145 Identities=11% Similarity=0.152 Sum_probs=80.1
Q ss_pred HHHHHHHhhcccCCccccchHHHhhhccCCCCcHHHHHHHHHHHHhhhh--HHhhCCCChhhHHHHHHHHHhccCCCH-H
Q 002148 456 ALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSK--WFDAASSDPSILASVLSILTSGMSTSE-D 532 (959)
Q Consensus 456 ~l~~l~~l~e~~~~~~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~--~l~~~p~~~~~l~~~l~~l~~~l~~~~-~ 532 (959)
++-+++-++-..+.--+++++.+...|.. ++|.||++++.++.++.. +++-.+ .++..++..+.+++ +
T Consensus 8 ~i~~l~DL~~r~~~~ve~~~~~l~~~L~D--~~~~VR~~al~~Ls~Li~~d~ik~k~-------~l~~~~l~~l~D~~~~ 78 (178)
T PF12717_consen 8 AIIALGDLCIRYPNLVEPYLPNLYKCLRD--EDPLVRKTALLVLSHLILEDMIKVKG-------QLFSRILKLLVDENPE 78 (178)
T ss_pred HHHHHHHHHHhCcHHHHhHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHcCceeehh-------hhhHHHHHHHcCCCHH
Confidence 33444444444433223455555555543 379999999999988643 333333 23233334445542 4
Q ss_pred HHHHHHHHHHHHHHH-hhhhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCC-hHHHHHHHHHhhhhh
Q 002148 533 TAAAAALAFRHICDD-CRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELP-QVDAKKALEMLCLPV 610 (959)
Q Consensus 533 v~~~A~~al~~lc~~-c~~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p-~~~~~~~l~~ll~p~ 610 (959)
++..|...|..+... ....+...++.++..+.+....+.....+.+.+..+|+-+ +..++ ++.....+++++.-+
T Consensus 79 Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fl---l~~i~~d~~~~~l~~kl~~~~ 155 (178)
T PF12717_consen 79 IRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFL---LDFIDKDKQKESLVEKLCQRF 155 (178)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHH---HHHcCcHHHHHHHHHHHHHHH
Confidence 999999999999887 4444555566555544433211100024566677777666 44444 334445566665554
Q ss_pred HH
Q 002148 611 VT 612 (959)
Q Consensus 611 ~~ 612 (959)
..
T Consensus 156 ~~ 157 (178)
T PF12717_consen 156 LN 157 (178)
T ss_pred HH
Confidence 43
No 70
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=83.76 E-value=15 Score=35.41 Aligned_cols=132 Identities=12% Similarity=0.131 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHhhcccCCc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhh
Q 002148 428 TLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAY 502 (959)
Q Consensus 428 ~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~l~e~~~~~-----~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y 502 (959)
.+..+...+.+.+. +.+...+-+++..++.+.+..+.+ ....+..++..|.+ ++.+.+...++.++++.
T Consensus 22 ~l~~l~~ri~~LL~-----s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~-~~~~~~~~~ai~~L~~l 95 (165)
T PF08167_consen 22 ALHKLVTRINSLLQ-----SKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEK-PDPPSVLEAAIITLTRL 95 (165)
T ss_pred HHHHHHHHHHHHhC-----CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 34444445555432 344555567888888888777433 23556666666666 55678899999999999
Q ss_pred hhHHhhCCCCh-----hhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHH
Q 002148 503 SKWFDAASSDP-----SILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTA 566 (959)
Q Consensus 503 ~~~l~~~p~~~-----~~l~~~l~~l~~~l~~~~~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~ 566 (959)
..+....|+.. ..++++++.++.-++.+. ....+..++..+...-..-+.||...+-..+.+.
T Consensus 96 ~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~~~-~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~l 163 (165)
T PF08167_consen 96 FDLIRGKPTLTREIATPNLPKFIQSLLQLLQDSS-CPETALDALATLLPHHPTTFRPFANKIESALLSL 163 (165)
T ss_pred HHHhcCCCchHHHHhhccHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHCCccccchHHHHHHHHHHH
Confidence 99888888731 245666666665555333 5667777777777655555666766666555443
No 71
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.02 E-value=92 Score=35.55 Aligned_cols=268 Identities=16% Similarity=0.166 Sum_probs=129.1
Q ss_pred HHhccCCCH-HHHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCChHHHHH
Q 002148 523 LTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKK 601 (959)
Q Consensus 523 l~~~l~~~~-~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~ 601 (959)
+.+++++.- +=+.+||.-+.+++++|-.. ...+.+-..+..+...- .......-+..-.=|++.+.-++..+...
T Consensus 5 i~r~ltdKlYekRKaaalelEk~Vk~l~~~--~~~~~i~k~I~~L~~d~-a~s~~~n~rkGgLiGlAA~~iaLg~~~~~- 80 (675)
T KOG0212|consen 5 IARGLTDKLYEKRKAAALELEKLVKDLVNN--NDYDQIRKVISELAGDY-AYSPHANMRKGGLIGLAAVAIALGIKDAG- 80 (675)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHcc--CcHHHHHHHHHHHHHHh-ccCcccccccchHHHHHHHHHHhccccHH-
Confidence 446666642 24778888899999877532 22333333332222110 00011111223444666666667666665
Q ss_pred HHHHhhhhhHHHHHHHHhcCCCcccccCchhh-hHHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcccH-HHHH
Q 002148 602 ALEMLCLPVVTPLQEIINQGPEILQKKHPRDL-TVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDM-RTME 679 (959)
Q Consensus 602 ~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~-~i~e 679 (959)
|+++++.|++..+ ...+ ...+-+ +..+..++.+.++ .+..++..++.++-.+...-..+. .-.|
T Consensus 81 Y~~~iv~Pv~~cf----~D~d-----~~vRyyACEsLYNiaKv~k~-----~v~~~Fn~iFdvL~klsaDsd~~V~~~ae 146 (675)
T KOG0212|consen 81 YLEKIVPPVLNCF----SDQD-----SQVRYYACESLYNIAKVAKG-----EVLVYFNEIFDVLCKLSADSDQNVRGGAE 146 (675)
T ss_pred HHHHhhHHHHHhc----cCcc-----ceeeeHhHHHHHHHHHHhcc-----CcccchHHHHHHHHHHhcCCccccccHHH
Confidence 9999999988543 2221 122222 3345666666553 233455555555555443221111 1123
Q ss_pred HHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHH-HhhcCCcchhHhHHHHHHHhCCCccchHHHHHHHHHHHHHHHHhhcC
Q 002148 680 SLCRACKYAVRTSK-RFMGITIGAILEEIQGL-YQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTS 757 (959)
Q Consensus 680 ~~~~~l~~~~~~~~-~~~~~~l~~l~~~l~~~-~~~~~~~~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~ 757 (959)
-.-+.++.++..-. .+ -++.++..+... |..++... ..+++++-..... +.. .+-+-+..++..-+.++.
T Consensus 147 LLdRLikdIVte~~~tF---sL~~~ipLL~eriy~~n~~tR-~flv~Wl~~Lds~-P~~--~m~~yl~~~ldGLf~~Ls- 218 (675)
T KOG0212|consen 147 LLDRLIKDIVTESASTF---SLPEFIPLLRERIYVINPMTR-QFLVSWLYVLDSV-PDL--EMISYLPSLLDGLFNMLS- 218 (675)
T ss_pred HHHHHHHHhcccccccc---CHHHHHHHHHHHHhcCCchHH-HHHHHHHHHHhcC-CcH--HHHhcchHHHHHHHHHhc-
Confidence 33444444444322 22 133334433322 33333221 2233433333222 111 122233445555666665
Q ss_pred cccCCCCCCcHHHHHHHHHHHHh---hCCCcccCcCChHHHHHHHHHhccCCCchhHHHHHHHHHHhhcC
Q 002148 758 IEEFTSRPDVADDCFLLASRCIR---YCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDL 824 (959)
Q Consensus 758 ~~~~~~~pDl~~~~f~l~~~~~~---~~p~~~l~s~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~li~~ 824 (959)
++++|++.-.=..++.++. ..|..+ ....+++..+.-++.+|++....++.++..|+.-
T Consensus 219 ----D~s~eVr~~~~t~l~~fL~eI~s~P~s~----d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i 280 (675)
T KOG0212|consen 219 ----DSSDEVRTLTDTLLSEFLAEIRSSPSSM----DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKI 280 (675)
T ss_pred ----CCcHHHHHHHHHHHHHHHHHHhcCcccc----CcccchhhccccccCCcHHHHHHHHHHHHHHhcC
Confidence 4566665433333444443 445543 2344555555556778888888889988888864
No 72
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=82.39 E-value=1e+02 Score=35.55 Aligned_cols=97 Identities=15% Similarity=0.205 Sum_probs=65.0
Q ss_pred cccchHHHhhhccC-CC-CcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHH
Q 002148 471 EAEVMPQVMALLPK-LP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMST--SEDTAAAAALAFRHICD 546 (959)
Q Consensus 471 ~~~~l~~l~~~l~~-lp-~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~--~~~v~~~A~~al~~lc~ 546 (959)
..++++.+++.+.. +. ..|.+|..+..+.|..+.-++...+. ..+..+-.++...++. |+ +-..--.|+..|..
T Consensus 598 ~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~-~~l~klg~iLyE~lge~ypE-vLgsil~Ai~~I~s 675 (975)
T COG5181 598 GKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGET-KELAKLGNILYENLGEDYPE-VLGSILKAICSIYS 675 (975)
T ss_pred cCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchH-HHHHHHhHHHHHhcCcccHH-HHHHHHHHHHHHhh
Confidence 35677887776544 32 25789999999999999998876442 2455666666777765 45 66666666666665
Q ss_pred Hhh-hhhhCCHHHHHHHHHHHhhc
Q 002148 547 DCR-KKLCGYLDGLYNVYRTAVNG 569 (959)
Q Consensus 547 ~c~-~~L~~~~~~ll~~~~~~~~~ 569 (959)
..+ ..+.|=+..|+..+..++.+
T Consensus 676 v~~~~~mqpPi~~ilP~ltPILrn 699 (975)
T COG5181 676 VHRFRSMQPPISGILPSLTPILRN 699 (975)
T ss_pred hhcccccCCchhhccccccHhhhh
Confidence 444 34667777777776666653
No 73
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.36 E-value=1.1e+02 Score=36.14 Aligned_cols=162 Identities=14% Similarity=0.222 Sum_probs=90.9
Q ss_pred HHHHHHHhhccCCCcchhhhhHHhHHHhHHHHhhcccccccCcccchHHHHHHHHhhhHHHHHHHHHHHHhhccCCCCCC
Q 002148 316 LIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQ 395 (959)
Q Consensus 316 ~~l~~ll~~~~~~~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~d~~ 395 (959)
.++--+|.+.+.||.++..-|+.+-..+.+.- -+.++++.+-+...--.
T Consensus 317 ~l~mDvLrvLss~dldvr~Ktldi~ldLvssr----------------------------Nvediv~~Lkke~~kT~--- 365 (948)
T KOG1058|consen 317 GLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR----------------------------NVEDIVQFLKKEVMKTH--- 365 (948)
T ss_pred HHHHHHHHHcCcccccHHHHHHHHHHhhhhhc----------------------------cHHHHHHHHHHHHHhcc---
Confidence 45555577888899999999999876655321 01112222212111111
Q ss_pred CCChhhhHHHHHHHHHhhHHHHHhhhccChHHHHHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHhhcccCCc---cc
Q 002148 396 DLSLEDLKEFKHTRYAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV---EA 472 (959)
Q Consensus 396 ~~~~d~~~~f~~~R~~~~d~l~~~~~il~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~l~e~~~~~---~~ 472 (959)
.+|.++-..||+-+-.++..|+--.. .+-..+.+.+-+.+.. .+ -+++...+.-+.|.+..- ..
T Consensus 366 ---~~e~d~~~~yRqlLiktih~cav~Fp--~~aatvV~~ll~fisD-----~N---~~aas~vl~FvrE~iek~p~Lr~ 432 (948)
T KOG1058|consen 366 ---NEESDDNGKYRQLLIKTIHACAVKFP--EVAATVVSLLLDFISD-----SN---EAAASDVLMFVREAIEKFPNLRA 432 (948)
T ss_pred ---ccccccchHHHHHHHHHHHHHhhcCh--HHHHHHHHHHHHHhcc-----CC---HHHHHHHHHHHHHHHHhCchHHH
Confidence 11334556799988888877764443 2444445555555421 11 356666666666655321 22
Q ss_pred cchHHHhhhccCCCCcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccCC
Q 002148 473 EVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMST 529 (959)
Q Consensus 473 ~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~ 529 (959)
..+.++++.++++. .+.+...++|++|.|++=... +..++..+-..++.
T Consensus 433 ~ii~~l~~~~~~ir-S~ki~rgalwi~GeYce~~~~-------i~~~~k~i~~slGE 481 (948)
T KOG1058|consen 433 SIIEKLLETFPQIR-SSKICRGALWILGEYCEGLSE-------IQSVIKIIRQSLGE 481 (948)
T ss_pred HHHHHHHHhhhhhc-ccccchhHHHHHHHHHhhhHH-------HHHHHHHHHHhccc
Confidence 34555555555543 466888999999999864431 33455555555553
No 74
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=82.26 E-value=11 Score=36.59 Aligned_cols=90 Identities=17% Similarity=0.114 Sum_probs=65.0
Q ss_pred HHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHH-hhhhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhc
Q 002148 516 LASVLSILTSGMSTSE-DTAAAAALAFRHICDD-CRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 593 (959)
Q Consensus 516 l~~~l~~l~~~l~~~~-~v~~~A~~al~~lc~~-c~~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~ 593 (959)
....|..++.|+.+.+ +..--|-..+..+.+. ....+.|.+++++.-+...++. -+.+.....++++-.++.+
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~t-----r~~~V~~~~L~~Lq~Lv~~ 110 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNT-----RDPEVFCATLKALQQLVTS 110 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHHHHh
Confidence 3567778888887643 3677788888899888 7788999999999999999875 3567777888888777544
Q ss_pred CCh--HHHHHHHHHhhhhh
Q 002148 594 LPQ--VDAKKALEMLCLPV 610 (959)
Q Consensus 594 ~p~--~~~~~~l~~ll~p~ 610 (959)
-+. +...+++.+++.++
T Consensus 111 ~~~vG~aLvPyyrqLLp~l 129 (183)
T PF10274_consen 111 SDMVGEALVPYYRQLLPVL 129 (183)
T ss_pred hhhhhHHHHHHHHHHHHHH
Confidence 321 34446666655443
No 75
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=82.23 E-value=1.2e+02 Score=36.42 Aligned_cols=168 Identities=15% Similarity=0.206 Sum_probs=86.5
Q ss_pred CcchhhHHHHHHHHhhcccCCcc-----ccchHHHhhhccC----------------CC-CcHH--HHHHHHHHHHhhhh
Q 002148 449 EWRPAEAALFCIRAISTYVSVVE-----AEVMPQVMALLPK----------------LP-QQPQ--LLQTVCLTIGAYSK 504 (959)
Q Consensus 449 ~w~~~Ea~l~~l~~l~e~~~~~~-----~~~l~~l~~~l~~----------------lp-~~~~--v~~t~~~~ig~y~~ 504 (959)
+..-.--|+.|+..+.|.++..- ...+|-+.+-|.. +. .||+ ++.-++..+-.|-+
T Consensus 225 n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylD 304 (1051)
T KOG0168|consen 225 NFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLD 304 (1051)
T ss_pred cHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHH
Confidence 34444567777777788877642 2345544443221 11 2543 55556666667777
Q ss_pred HHhhC-----------------CCChhhHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhh---hhhC-CHHHHHHH
Q 002148 505 WFDAA-----------------SSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRK---KLCG-YLDGLYNV 562 (959)
Q Consensus 505 ~l~~~-----------------p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~lc~~c~~---~L~~-~~~~ll~~ 562 (959)
||.-| |+...++..+++.|.+-++..+ ++...+|.+|.++++...+ .|.. .-..+++.
T Consensus 305 FFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~ 384 (1051)
T KOG0168|consen 305 FFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITN 384 (1051)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHH
Confidence 77643 2222356666666666665442 4788899999999875542 1221 12346666
Q ss_pred HHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcC
Q 002148 563 YRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQG 621 (959)
Q Consensus 563 ~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~ 621 (959)
+++++... ...++......++.-+..+.+.-|. .....+...|...+..++...
T Consensus 385 ~~qLlsvt-~t~Ls~~~~~~vIrmls~msS~~pl----~~~tl~k~~I~~~L~~il~g~ 438 (1051)
T KOG0168|consen 385 IQQLLSVT-PTILSNGTYTGVIRMLSLMSSGSPL----LFRTLLKLDIADTLKRILQGY 438 (1051)
T ss_pred HHHHHhcC-cccccccchhHHHHHHHHHccCChH----HHHHHHHhhHHHHHHHHHhcc
Confidence 66666531 1223333333444444433333232 111223334444555555543
No 76
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=81.96 E-value=35 Score=35.97 Aligned_cols=74 Identities=18% Similarity=0.286 Sum_probs=59.8
Q ss_pred hHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhh--hhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHh
Q 002148 515 ILASVLSILTSGMSTSEDTAAAAALAFRHICDDCR--KKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVIT 592 (959)
Q Consensus 515 ~l~~~l~~l~~~l~~~~~v~~~A~~al~~lc~~c~--~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~ 592 (959)
+.-++|..++.++.++..++..--.++..+|.+|+ ..+.|.++.+-+.+.. ++.+.+++..++.++..++.
T Consensus 104 l~L~vLsnLfn~~d~~~~aR~~Vy~~lv~la~~~~~~~~i~~~lk~~~~~lke-------w~~~vedqrel~r~v~~al~ 176 (378)
T KOG2753|consen 104 LRLQVLSNLFNGVDKPTPARYQVYMSLVTLAASCKLIEYIVPNLKQLDDWLKE-------WNISVEDQRELLRAVHKALK 176 (378)
T ss_pred cHHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcceeeeecccHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHHH
Confidence 56788999999999987688888889999999998 4567777777666544 35789999999999998886
Q ss_pred cCC
Q 002148 593 ELP 595 (959)
Q Consensus 593 ~~p 595 (959)
.-.
T Consensus 177 ~~k 179 (378)
T KOG2753|consen 177 DNK 179 (378)
T ss_pred hcc
Confidence 543
No 77
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=80.68 E-value=56 Score=33.31 Aligned_cols=174 Identities=10% Similarity=0.121 Sum_probs=82.9
Q ss_pred hHHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhc-ccHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHh
Q 002148 634 TVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRA-WDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQ 712 (959)
Q Consensus 634 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~-~~~~i~e~~~~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~ 712 (959)
...|..+..++.+.........+...+-.++..+..... ....+.-.+|.++..+...+|..+.|+++.++..++....
T Consensus 25 ~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~ 104 (228)
T PF12348_consen 25 VEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLG 104 (228)
T ss_dssp HHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHc
Confidence 345667777766651111111222222222222222221 2335778899999999999999888887777776655444
Q ss_pred hcCC---cchhHhHHHHHHHhCCCccchHHHHHHHHHHHHHHHHhhcCcccCCCCCCcHHHHHHHHHHHHhhCC--Cccc
Q 002148 713 QHQQ---PCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCP--QLFI 787 (959)
Q Consensus 713 ~~~~---~~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pDl~~~~f~l~~~~~~~~p--~~~l 787 (959)
.... .....++..++...+ +.+.+ + ...+.. .....+|.++.....++..++..++ ...+
T Consensus 105 ~~~~~i~~~a~~~L~~i~~~~~----~~~~~---~-------~~~l~~-~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l 169 (228)
T PF12348_consen 105 DSKKFIREAANNALDAIIESCS----YSPKI---L-------LEILSQ-GLKSKNPQVREECAEWLAIILEKWGSDSSVL 169 (228)
T ss_dssp ---HHHHHHHHHHHHHHHTTS-----H--HH---H-------HHHHHH-HTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred cccHHHHHHHHHHHHHHHHHCC----cHHHH---H-------HHHHHH-HHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence 3210 111222333332221 00111 0 111110 0124678899999999999999888 2222
Q ss_pred -CcCChHHHHHHHHHhccCCCchhHHHHHHHHHHhh
Q 002148 788 -PSSVFPSLVDCSMIGITVQHREASNSILTFLSDIF 822 (959)
Q Consensus 788 -~s~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~li 822 (959)
.+..++.+......++.-.++++-.++-..+..+.
T Consensus 170 ~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~ 205 (228)
T PF12348_consen 170 QKSAFLKQLVKALVKLLSDADPEVREAARECLWALY 205 (228)
T ss_dssp --HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 22335566666666666666665555555555554
No 78
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=79.76 E-value=1.3e+02 Score=35.06 Aligned_cols=70 Identities=11% Similarity=0.185 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHh
Q 002148 489 PQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAV 567 (959)
Q Consensus 489 ~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~~ 567 (959)
+....-+...|.+|..+| |+ +-..+++.++.-..+.+ .++..|-+.|-.||++-.. ++..+.+++.+++
T Consensus 36 ~k~K~Laaq~I~kffk~F---P~---l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~----~v~kvaDvL~QlL 105 (556)
T PF05918_consen 36 PKEKRLAAQFIPKFFKHF---PD---LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPE----HVSKVADVLVQLL 105 (556)
T ss_dssp HHHHHHHHHHHHHHHCC----GG---GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-----HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhC---hh---hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHH----HHhHHHHHHHHHH
Confidence 445555556665554333 33 44555555554444332 3666666666666665332 3344444444444
Q ss_pred h
Q 002148 568 N 568 (959)
Q Consensus 568 ~ 568 (959)
.
T Consensus 106 ~ 106 (556)
T PF05918_consen 106 Q 106 (556)
T ss_dssp T
T ss_pred h
Confidence 3
No 79
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=79.12 E-value=10 Score=36.29 Aligned_cols=76 Identities=12% Similarity=0.136 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHhhc
Q 002148 490 QLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNG 569 (959)
Q Consensus 490 ~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~~~~ 569 (959)
.+|+++.+++...-+-...+- -+..++..+..|+.+..+++.-+..-+.+++..+...+.+.++.+.+.+...++.
T Consensus 42 elRK~ayE~lytlLd~~~~~~----~~~~~~~~v~~GL~D~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~ 117 (169)
T PF08623_consen 42 ELRKAAYECLYTLLDTCLSRI----DISEFLDRVEAGLKDEHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSK 117 (169)
T ss_dssp HHHHHHHHHHHHHHHSTCSSS-----HHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHhC----CHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhc
Confidence 599999999988765332222 3667788899999987679999999999999999888888888888888887764
No 80
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=78.95 E-value=1.1e+02 Score=33.87 Aligned_cols=124 Identities=9% Similarity=0.110 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCCc------chhHhHHHHHHHhCCC-ccch--HHHHHHHHHHH
Q 002148 678 MESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQP------CFLYLSSEVIKIFGSD-PSCA--SYLHNLIEALF 748 (959)
Q Consensus 678 ~e~~~~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~------~~L~l~~~li~~~~~~-~~~~--~~l~~~~~~l~ 748 (959)
+.+++.+++.+.+..+..+.+.+...++.+++.|...+.. +.+++++.+..+-... .++. +.+.++..-+.
T Consensus 228 R~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~ 307 (370)
T PF08506_consen 228 RRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFS 307 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHH
Confidence 4568888888877778888888888888888888876654 4567766666553211 1111 11122222233
Q ss_pred HHHHHhhcCcccCCCCCCcHHHHHHHHHHHHhhCCCcccCcCChHHHHHHHHHhccCCCc
Q 002148 749 KRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHR 808 (959)
Q Consensus 749 ~~~~~~l~~~~~~~~~pDl~~~~f~l~~~~~~~~p~~~l~s~~l~~~~~~~~~~l~~~~~ 808 (959)
+.+++-|+ .+.+.+|=+..+.+.++..+-...|. +.+..+++..+..+..++.
T Consensus 308 ~~v~peL~--~~~~~~piLka~aik~~~~Fr~~l~~-----~~l~~~~~~l~~~L~~~~~ 360 (370)
T PF08506_consen 308 QHVLPELQ--PDVNSHPILKADAIKFLYTFRNQLPK-----EQLLQIFPLLVNHLQSSSY 360 (370)
T ss_dssp HHTCHHHH---SS-S-HHHHHHHHHHHHHHGGGS-H-----HHHHHHHHHHHHHTTSS-H
T ss_pred HHhHHHhc--ccCCCCcchHHHHHHHHHHHHhhCCH-----HHHHHHHHHHHHHhCCCCc
Confidence 44455454 23456777788888888888776543 3566677777777765543
No 81
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=78.34 E-value=13 Score=35.77 Aligned_cols=128 Identities=18% Similarity=0.213 Sum_probs=82.8
Q ss_pred HHHHHHHHHHhhcCcccCCCCCCcHHHHHHHHHHHHhhC-CCcccC--cCChHHHHHHHHHhccCCCch-hHHHHHHHHH
Q 002148 744 IEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYC-PQLFIP--SSVFPSLVDCSMIGITVQHRE-ASNSILTFLS 819 (959)
Q Consensus 744 ~~~l~~~~~~~l~~~~~~~~~pDl~~~~f~l~~~~~~~~-p~~~l~--s~~l~~~~~~~~~~l~~~~~~-~~~~~~~fl~ 819 (959)
+..+..++.++++ +.+++-+-.-..++...++.+ +..|.. +..+..++.. ++.+++. +.++++..+.
T Consensus 23 l~~l~~ri~~LL~-----s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~----L~~~~~~~~~~~ai~~L~ 93 (165)
T PF08167_consen 23 LHKLVTRINSLLQ-----SKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSI----LEKPDPPSVLEAAIITLT 93 (165)
T ss_pred HHHHHHHHHHHhC-----CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH----HcCCCCHHHHHHHHHHHH
Confidence 4445566777776 344666777788999999988 454434 2334444444 4444444 4578888888
Q ss_pred HhhcCcCCCCchhhHHHHHHHHhhccHHHHHHHHHHcccCCCCCCcccHHHHHHHHHHHhhHHHHHHHH
Q 002148 820 DIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETVTYALLALTRAYGVRSLEWAK 888 (959)
Q Consensus 820 ~li~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~l~~~~~~~~~~~~a~il~~l~~~~~~~~~~wl~ 888 (959)
.++....+ .+++ .+++..++.+.++..++.-+.. ....+.+-+.|.++...||.-++.+-.
T Consensus 94 ~l~~~~~~--~p~l---~Rei~tp~l~~~i~~ll~l~~~---~~~~~~~l~~L~~ll~~~ptt~rp~~~ 154 (165)
T PF08167_consen 94 RLFDLIRG--KPTL---TREIATPNLPKFIQSLLQLLQD---SSCPETALDALATLLPHHPTTFRPFAN 154 (165)
T ss_pred HHHHHhcC--CCch---HHHHhhccHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHCCccccchHH
Confidence 88875322 2333 5677778888888887765532 566677778888888888866655433
No 82
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=78.22 E-value=1.2e+02 Score=35.00 Aligned_cols=179 Identities=12% Similarity=0.159 Sum_probs=91.5
Q ss_pred HHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcC
Q 002148 636 HIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQ 715 (959)
Q Consensus 636 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~ 715 (959)
+++.++...+...- .-+.++|-....++.. ....+.+..+..++..++..-+......=-.+...+ ..+.
T Consensus 10 a~~~l~~~i~~~~~-----~~i~~iW~~~~DLi~~-~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I----~~~~ 79 (464)
T PF11864_consen 10 AAEELCESIQKYPL-----SSIEEIWYAAKDLIDP-NQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDI----SDPS 79 (464)
T ss_pred HHHHHHHHHHhCCc-----hHHHHHHHHHhhhcCC-CCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHH----hcCC
Confidence 44455554443331 3456788888887755 334567888888888777653321111001111111 1112
Q ss_pred C----cchhHhHHHHHHHhCCCcc-----chHHHHHHHHHHHHHHHH---hhcC-----ccc---CCCCCCcHHHHHHHH
Q 002148 716 Q----PCFLYLSSEVIKIFGSDPS-----CASYLHNLIEALFKRTTC---LLTS-----IEE---FTSRPDVADDCFLLA 775 (959)
Q Consensus 716 ~----~~~L~l~~~li~~~~~~~~-----~~~~l~~~~~~l~~~~~~---~l~~-----~~~---~~~~pDl~~~~f~l~ 775 (959)
. +..|..+..+-+. |++=. ..+.+...+..+.+.+-. .... ..+ .+.......++|.|+
T Consensus 80 ~~~d~~~~l~aL~~LT~~-Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l 158 (464)
T PF11864_consen 80 NDDDFDLRLEALIALTDN-GRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFL 158 (464)
T ss_pred CchhHHHHHHHHHHHHcC-CcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHH
Confidence 2 2334444444432 44311 222233322222211000 0000 000 112344678999999
Q ss_pred HHHHhhCCCcccCcCChHHHHHHHH-HhccCCCchhHHHHHHHHHHhhcCcC
Q 002148 776 SRCIRYCPQLFIPSSVFPSLVDCSM-IGITVQHREASNSILTFLSDIFDLAK 826 (959)
Q Consensus 776 ~~~~~~~p~~~l~s~~l~~~~~~~~-~~l~~~~~~~~~~~~~fl~~li~~~~ 826 (959)
..++++.... +.++.+..+++.++ .|......+..++++.++..++..+.
T Consensus 159 ~nviKfn~~~-l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~ 209 (464)
T PF11864_consen 159 VNVIKFNFNY-LDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGD 209 (464)
T ss_pred HHHHhcCCCC-CCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCc
Confidence 9999987764 33344556665443 35556667778999999999998653
No 83
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=77.97 E-value=43 Score=35.39 Aligned_cols=175 Identities=14% Similarity=0.180 Sum_probs=103.1
Q ss_pred CCCcchhhHHHHHHHHhhcccCCc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhhhh-------HHhhCCCChh
Q 002148 447 HNEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSK-------WFDAASSDPS 514 (959)
Q Consensus 447 ~~~w~~~Ea~l~~l~~l~e~~~~~-----~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~-------~l~~~p~~~~ 514 (959)
..+--++||+ |++..++.+-+.. +...+|.++++|.+- +..|+..+.|.+|..+. ++-.+ .
T Consensus 127 q~~mlqfEAa-WalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~--~~~V~eQavWALGNiAGDS~~~RD~vL~~----g 199 (526)
T COG5064 127 QRDMLQFEAA-WALTNIASGTTQQTKVVVDAGAVPLFIQLLSST--EDDVREQAVWALGNIAGDSEGCRDYVLQC----G 199 (526)
T ss_pred chhHHHHHHH-HHHhhhccCcccceEEEEeCCchHHHHHHHcCc--hHHHHHHHHHHhccccCCchhHHHHHHhc----C
Confidence 3455667754 7888888776543 245688888887663 57799999999998764 22222 2
Q ss_pred hHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhCC---HHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHH
Q 002148 515 ILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGY---LDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVI 591 (959)
Q Consensus 515 ~l~~~l~~l~~~l~~~~~v~~~A~~al~~lc~~c~~~L~~~---~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi 591 (959)
.+.++|+.+.+.-.+-. ..+.|..+|.++|+.-.+ .|. +..-+..+..++.. .+.+.-...+=||+++.
T Consensus 200 aleplL~ll~ss~~~is-mlRn~TWtLSNlcRGknP--~P~w~~isqalpiL~KLiys-----~D~evlvDA~WAiSYls 271 (526)
T COG5064 200 ALEPLLGLLLSSAIHIS-MLRNATWTLSNLCRGKNP--PPDWSNISQALPILAKLIYS-----RDPEVLVDACWAISYLS 271 (526)
T ss_pred chHHHHHHHHhccchHH-HHHHhHHHHHHhhCCCCC--CCchHHHHHHHHHHHHHHhh-----cCHHHHHHHHHHHHHhc
Confidence 68899999876554444 677888889999874322 232 33344444444432 45555556666666544
Q ss_pred hcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhc
Q 002148 592 TELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYV 647 (959)
Q Consensus 592 ~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 647 (959)
-.|.|.....+..= +..+|-+++..... .-....|+.++.++-+-
T Consensus 272 -Dg~~E~i~avld~g---~~~RLvElLs~~sa-------~iqtPalR~vGNIVTG~ 316 (526)
T COG5064 272 -DGPNEKIQAVLDVG---IPGRLVELLSHESA-------KIQTPALRSVGNIVTGS 316 (526)
T ss_pred -cCcHHHHHHHHhcC---CcHHHHHHhcCccc-------cccCHHHHhhcCeeecC
Confidence 33555555444332 22334444443321 11233566667666543
No 84
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=77.89 E-value=93 Score=32.39 Aligned_cols=132 Identities=14% Similarity=0.153 Sum_probs=80.0
Q ss_pred CcchhhHHHHHHHHhhcccCCcc-----ccchHHHhhhccCCCCcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHH
Q 002148 449 EWRPAEAALFCIRAISTYVSVVE-----AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSIL 523 (959)
Q Consensus 449 ~w~~~Ea~l~~l~~l~e~~~~~~-----~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l 523 (959)
+-...|.++++++..+. .+... ...++-+..++.. | +|.++..++.++...+.--.+......+++.++.-+
T Consensus 26 dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~-p-~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~ 102 (254)
T PF04826_consen 26 DPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLND-P-NPSVREKALNALNNLSVNDENQEQIKMYIPQVCEET 102 (254)
T ss_pred ChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCC-C-ChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHH
Confidence 34456888888887543 22221 1233334444433 4 789999999999877654333322234677777776
Q ss_pred HhccCCCHHHHHHHHHHHHHHHH--HhhhhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhc
Q 002148 524 TSGMSTSEDTAAAAALAFRHICD--DCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 593 (959)
Q Consensus 524 ~~~l~~~~~v~~~A~~al~~lc~--~c~~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~ 593 (959)
.+.--+.+ ++.++-++|.+++- +....+.++++.++.. +..+ +...+..++..+..+...
T Consensus 103 ~s~~lns~-~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~L----L~~G-----~~~~k~~vLk~L~nLS~n 164 (254)
T PF04826_consen 103 VSSPLNSE-VQLAGLRLLTNLTVTNDYHHMLANYIPDLLSL----LSSG-----SEKTKVQVLKVLVNLSEN 164 (254)
T ss_pred hcCCCCCH-HHHHHHHHHHccCCCcchhhhHHhhHHHHHHH----HHcC-----ChHHHHHHHHHHHHhccC
Confidence 65433455 89999999999863 3344566777776643 3321 345677777777665554
No 85
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=77.51 E-value=1.9e+02 Score=35.88 Aligned_cols=132 Identities=17% Similarity=0.121 Sum_probs=82.2
Q ss_pred chhhHHHHHHHHhhcccCCcc-ccchHHHhhhccC---CCCcHHHHH----HHHHHHHhhhhH-----------------
Q 002148 451 RPAEAALFCIRAISTYVSVVE-AEVMPQVMALLPK---LPQQPQLLQ----TVCLTIGAYSKW----------------- 505 (959)
Q Consensus 451 ~~~Ea~l~~l~~l~e~~~~~~-~~~l~~l~~~l~~---lp~~~~v~~----t~~~~ig~y~~~----------------- 505 (959)
.-++|++|+..+++.+-.+.+ .+++.++...|.. +...--+|+ +..+.+||...+
T Consensus 443 ~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~ 522 (1133)
T KOG1943|consen 443 HVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNFPHGISLISTIDYFSVTN 522 (1133)
T ss_pred chHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhh
Confidence 346899999999998876553 4556666665432 221222222 223566764332
Q ss_pred -----------HhhCCCChhhHHHHHHHHHhc-cCC-CHHHHHHHHHHHHHHHHHhhhhhh-CCHHHHHHHHHHHhhccC
Q 002148 506 -----------FDAASSDPSILASVLSILTSG-MST-SEDTAAAAALAFRHICDDCRKKLC-GYLDGLYNVYRTAVNGEG 571 (959)
Q Consensus 506 -----------l~~~p~~~~~l~~~l~~l~~~-l~~-~~~v~~~A~~al~~lc~~c~~~L~-~~~~~ll~~~~~~~~~~~ 571 (959)
++.+|+ |..++++-++.. +.| ..+++..|++|+.++.....+.+. -+++.+++.. +
T Consensus 523 rsNcy~~l~~~ia~~~~---y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~---l---- 592 (1133)
T KOG1943|consen 523 RSNCYLDLCVSIAEFSG---YREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDST---L---- 592 (1133)
T ss_pred hhhHHHHHhHHHHhhhh---HHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhh---c----
Confidence 233333 566666666532 433 224899999999999988777777 4567666543 2
Q ss_pred CCCCCHhhHHHHHHHHHHHHhcC
Q 002148 572 SLKVSAEDSLHLVEALSMVITEL 594 (959)
Q Consensus 572 ~~~l~~~~~~~l~eai~~vi~~~ 594 (959)
.-+...|...+-+.|.++.+.
T Consensus 593 --s~~~~~r~g~~la~~ev~~~~ 613 (1133)
T KOG1943|consen 593 --SKDASMRHGVFLAAGEVIGAL 613 (1133)
T ss_pred --CCChHHhhhhHHHHHHHHHHh
Confidence 134567778888888888763
No 86
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=77.06 E-value=19 Score=30.04 Aligned_cols=87 Identities=22% Similarity=0.197 Sum_probs=58.4
Q ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHhcChhhHHHHHHHhccCCCChhHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHH
Q 002148 8 KEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSL 87 (959)
Q Consensus 8 ~~av~~l~~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~~~faa~~L~~ki~~~w~~l~~~~~~~lr~~L 87 (959)
+..++.+-.++|+..|..|-..|.++. ++++-.....++. +.++.+|..|+..|... . . ......|
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~-~~~~~~~L~~~l~--d~~~~vr~~a~~aL~~i-~-------~---~~~~~~L 67 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG-DPEAIPALIELLK--DEDPMVRRAAARALGRI-G-------D---PEAIPAL 67 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT-HHHHHHHHHHHHT--SSSHHHHHHHHHHHHCC-H-------H---HHTHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC-CHhHHHHHHHHHc--CCCHHHHHHHHHHHHHh-C-------C---HHHHHHH
Confidence 445566656889999999999999774 7788888888885 46788999999999842 1 1 1122333
Q ss_pred HHHHHHhcCCChHHHHHHHHHHH
Q 002148 88 NTLLKKFHKGPPKVRTQISIAVA 110 (959)
Q Consensus 88 l~~l~~~~~~~~~v~~kL~~~la 110 (959)
...+.+ .....+|.....+|+
T Consensus 68 ~~~l~~--~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 68 IKLLQD--DDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHTC---SSHHHHHHHHHHHH
T ss_pred HHHHcC--CCcHHHHHHHHhhcC
Confidence 333332 234566776666664
No 87
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.06 E-value=1.4e+02 Score=34.15 Aligned_cols=335 Identities=11% Similarity=0.126 Sum_probs=167.3
Q ss_pred hhhHHHHHHHHhhcccCCc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhhhhHHhhCCCC---hhhHHHHHHHH
Q 002148 452 PAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSD---PSILASVLSIL 523 (959)
Q Consensus 452 ~~Ea~l~~l~~l~e~~~~~-----~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~---~~~l~~~l~~l 523 (959)
++| +-|++..++.+-++. ++..+|.++.++.+ +|..|+..+.|.+|..+..=....++ ...+++++..+
T Consensus 127 q~e-AAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s--~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l 203 (514)
T KOG0166|consen 127 QFE-AAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSS--PSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLL 203 (514)
T ss_pred HHH-HHHHHHHHhcCchhhccccccCCchHHHHHHhcC--CcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHh
Confidence 355 557888887766543 23456666665544 38899999999999886421111110 01455666555
Q ss_pred HhccCCCHHHHHHHHHHHHHHHHHhhhhhhCC---HHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCChHHHH
Q 002148 524 TSGMSTSEDTAAAAALAFRHICDDCRKKLCGY---LDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAK 600 (959)
Q Consensus 524 ~~~l~~~~~v~~~A~~al~~lc~~c~~~L~~~---~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~ 600 (959)
..... -...+.+..++.+||+...+ .|. +..++..+..++.. .+.+......=|++++... ++|..+
T Consensus 204 ~~~~~--~~~lRn~tW~LsNlcrgk~P--~P~~~~v~~iLp~L~~ll~~-----~D~~Vl~Da~WAlsyLsdg-~ne~iq 273 (514)
T KOG0166|consen 204 NKSDK--LSMLRNATWTLSNLCRGKNP--SPPFDVVAPILPALLRLLHS-----TDEEVLTDACWALSYLTDG-SNEKIQ 273 (514)
T ss_pred ccccc--hHHHHHHHHHHHHHHcCCCC--CCcHHHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHhcC-ChHHHH
Confidence 43322 23678899999999987652 233 34455555555542 3455555566666655544 445544
Q ss_pred HHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcccHHHHHH
Q 002148 601 KALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMES 680 (959)
Q Consensus 601 ~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~ 680 (959)
..++. -.+.++-.++..... .....+|..++.++-+... +--.-.-....|.+..++...+.+ .+...
T Consensus 274 ~vi~~---gvv~~LV~lL~~~~~-------~v~~PaLRaiGNIvtG~d~-QTq~vi~~~~L~~l~~ll~~s~~~-~ikkE 341 (514)
T KOG0166|consen 274 MVIDA---GVVPRLVDLLGHSSP-------KVVTPALRAIGNIVTGSDE-QTQVVINSGALPVLSNLLSSSPKE-SIKKE 341 (514)
T ss_pred HHHHc---cchHHHHHHHcCCCc-------ccccHHHhhccceeeccHH-HHHHHHhcChHHHHHHHhccCcch-hHHHH
Confidence 33322 333344455543321 1123456777776543221 000011135567777777643332 25666
Q ss_pred HHHHHHHHHHHhhh-----hhhhhHHHHHHHHHH-HHhhcCCcchhHhHHHHHHHhCCCccchHHHHHHHHH-HHHHHHH
Q 002148 681 LCRACKYAVRTSKR-----FMGITIGAILEEIQG-LYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEA-LFKRTTC 753 (959)
Q Consensus 681 ~~~~l~~~~~~~~~-----~~~~~l~~l~~~l~~-~~~~~~~~~~L~l~~~li~~~~~~~~~~~~l~~~~~~-l~~~~~~ 753 (959)
+|-.+..+...-.. .-..++|.++..+.. .|.... ...|.++.+... .. .+.+.-+.+. ++.+...
T Consensus 342 AcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rK--EAawaIsN~ts~--g~---~~qi~yLv~~giI~plcd 414 (514)
T KOG0166|consen 342 ACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRK--EAAWAISNLTSS--GT---PEQIKYLVEQGIIKPLCD 414 (514)
T ss_pred HHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHH--HHHHHHHhhccc--CC---HHHHHHHHHcCCchhhhh
Confidence 77777664432111 123566777766543 243322 233444443322 22 2233332222 2222223
Q ss_pred hhcCcccCCCCCCcHHHHHHHHHHHHhhCCCcccCc-CChHHHHHHH-----HHhccC-CCchhHHHHHHHHHHhhc
Q 002148 754 LLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPS-SVFPSLVDCS-----MIGITV-QHREASNSILTFLSDIFD 823 (959)
Q Consensus 754 ~l~~~~~~~~~pDl~~~~f~l~~~~~~~~p~~~l~s-~~l~~~~~~~-----~~~l~~-~~~~~~~~~~~fl~~li~ 823 (959)
+|. -.+++++...+.-+..+++.....-... ..+...++-+ +..++. .+.+..+.+.+.+..++.
T Consensus 415 lL~-----~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~ 486 (514)
T KOG0166|consen 415 LLT-----CPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFS 486 (514)
T ss_pred ccc-----CCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 332 2334556666655555555433322211 1222222221 334443 344777888888888774
No 88
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=76.93 E-value=1.8e+02 Score=35.32 Aligned_cols=224 Identities=12% Similarity=0.115 Sum_probs=120.2
Q ss_pred ccchHHHhhhccCCCC--cHHHHHHHHHHHHhhh----hHHhhCCCChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 002148 472 AEVMPQVMALLPKLPQ--QPQLLQTVCLTIGAYS----KWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHIC 545 (959)
Q Consensus 472 ~~~l~~l~~~l~~lp~--~~~v~~t~~~~ig~y~----~~l~~~p~~~~~l~~~l~~l~~~l~~~~~v~~~A~~al~~lc 545 (959)
.+..|.++..|.++.+ ...+-...+++++.-. ++-....+ ...|-.++.+...-.+|. |...+-..|.++|
T Consensus 525 ~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~s--kI~P~~i~lF~k~s~DP~-V~~~~qd~f~el~ 601 (1005)
T KOG2274|consen 525 LSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMES--KICPLTINLFLKYSEDPQ-VASLAQDLFEELL 601 (1005)
T ss_pred cccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhc--chhHHHHHHHHHhcCCch-HHHHHHHHHHHHH
Confidence 4567777777766421 3334444444444433 33333322 366777777777778887 8999999999999
Q ss_pred HHhhhhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcc
Q 002148 546 DDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEIL 625 (959)
Q Consensus 546 ~~c~~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~ 625 (959)
+. .....|+.+.++..+.++++.+. .+.+.......++-+..++..-|+.--...+.....|+. ++.-...
T Consensus 602 q~-~~~~g~m~e~~iPslisil~~~~-~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVa----k~tlHsd--- 672 (1005)
T KOG2274|consen 602 QI-AANYGPMQERLIPSLISVLQLNA-DKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVA----KITLHSD--- 672 (1005)
T ss_pred HH-HHhhcchHHHHHHHHHHHHcCcc-cccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhH----hheeecC---
Confidence 83 33345665555555555555432 234455566677777778888776533333333344433 3331110
Q ss_pred cccCchhhhHHHHHHHHHhhhcC----C--cccHHHHHHHHhHHHHHHHHhhcccHHHHHHHHHHHHHH----HHHhhhh
Q 002148 626 QKKHPRDLTVHIDRFAYIFRYVN----H--PEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYA----VRTSKRF 695 (959)
Q Consensus 626 ~~~~~~~~~~~l~~l~~~~~~~~----~--~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~----~~~~~~~ 695 (959)
....+...=+|+..++.... + .+|... +.-+|.++.+++.. +.-|..|...++. +...|..
T Consensus 673 ---D~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~-~~yImqV~sqLLdp-----~~sds~a~~VG~lV~tLit~a~~e 743 (1005)
T KOG2274|consen 673 ---DHETLQNATECLRALISVTLEQLLTWHDEPGHN-LWYIMQVLSQLLDP-----ETSDSAAAFVGPLVLTLITHASSE 743 (1005)
T ss_pred ---ChHHHHhHHHHHHHHHhcCHHHHHhhccCCCcc-HHHHHHHHHHHcCC-----ccchhHHHHHhHHHHHHHHHHHHH
Confidence 01112222355555554311 0 122222 34556666666543 3334455555543 3445666
Q ss_pred hhhhHHHHHHHHHHHHhhcCC
Q 002148 696 MGITIGAILEEIQGLYQQHQQ 716 (959)
Q Consensus 696 ~~~~l~~l~~~l~~~~~~~~~ 716 (959)
+.|.+..++..++...++.+.
T Consensus 744 l~~n~d~IL~Avisrmq~ae~ 764 (1005)
T KOG2274|consen 744 LGPNLDQILRAVISRLQQAET 764 (1005)
T ss_pred hchhHHHHHHHHHHHHHHhhh
Confidence 667677777766666665443
No 89
>PRK09687 putative lyase; Provisional
Probab=74.90 E-value=1.2e+02 Score=32.17 Aligned_cols=119 Identities=9% Similarity=-0.001 Sum_probs=63.2
Q ss_pred CcchhhHHHHHHHHhhcccCCccccchHHHhhhccCCCCcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccC
Q 002148 449 EWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMS 528 (959)
Q Consensus 449 ~w~~~Ea~l~~l~~l~e~~~~~~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~ 528 (959)
+-..+..+.++|+.++..-.. ....++.+...+.+ ..++.||..++..+|.... .++. ..+.++..+...+.
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~-~~~a~~~L~~l~~~-D~d~~VR~~A~~aLG~~~~---~~~~---~~~~a~~~l~~~~~ 138 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRC-QDNVFNILNNLALE-DKSACVRASAINATGHRCK---KNPL---YSPKIVEQSQITAF 138 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccc-hHHHHHHHHHHHhc-CCCHHHHHHHHHHHhcccc---cccc---cchHHHHHHHHHhh
Confidence 345567778888877642111 11223333333222 2367889999988887642 1111 23344444544444
Q ss_pred CCH-HHHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHH
Q 002148 529 TSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMV 590 (959)
Q Consensus 529 ~~~-~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~v 590 (959)
+++ .|+..|+.||.++.. +.-+..+..++.. -+.+.|....+++|.+
T Consensus 139 D~~~~VR~~a~~aLg~~~~----------~~ai~~L~~~L~d-----~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 139 DKSTNVRFAVAFALSVIND----------EAAIPLLINLLKD-----PNGDVRNWAAFALNSN 186 (280)
T ss_pred CCCHHHHHHHHHHHhccCC----------HHHHHHHHHHhcC-----CCHHHHHHHHHHHhcC
Confidence 432 388888888854421 1223333344432 2346777888888766
No 90
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=74.83 E-value=1.5e+02 Score=33.28 Aligned_cols=175 Identities=14% Similarity=0.112 Sum_probs=99.3
Q ss_pred HHHHHhhhhHHhhCCCChhhHHHHHHHHHhccCCCH--HHHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHhhccCCC
Q 002148 496 CLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE--DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSL 573 (959)
Q Consensus 496 ~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~--~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~~~~~~~~ 573 (959)
+.+-|.++-|-++ ...+|..++.-+++.+ .....|-+.++++|+.-...|..+.+.-+..+.+.-..
T Consensus 314 m~~e~sfsvWeq~-------f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~d---- 382 (516)
T KOG2956|consen 314 MLCEGSFSVWEQH-------FAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKD---- 382 (516)
T ss_pred HHHccchhHHHHH-------HHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhC----
Confidence 3345666667654 4455555555556532 25777888888888877777777766544444333221
Q ss_pred CCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCCcccH
Q 002148 574 KVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAV 653 (959)
Q Consensus 574 ~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 653 (959)
-..+.....-|.+..+++...+..... .+.|++ ..++ ..+. ...|+++..+|..+.. +..
T Consensus 383 -s~~~v~~~Aeed~~~~las~~P~~~I~----~i~~~I-------lt~D------~~~~-~~~iKm~Tkl~e~l~~-EeL 442 (516)
T KOG2956|consen 383 -SQDEVMRVAEEDCLTTLASHLPLQCIV----NISPLI-------LTAD------EPRA-VAVIKMLTKLFERLSA-EEL 442 (516)
T ss_pred -CchhHHHHHHHHHHHHHHhhCchhHHH----HHhhHH-------hcCc------chHH-HHHHHHHHHHHhhcCH-HHH
Confidence 223344445555555555543332222 223332 1111 2232 3468899999988763 223
Q ss_pred HHHHHHHhHHHHHHHHhhcc-cHHHHHHHHHHHHHHHHHhh-hhhhhhHHHHH
Q 002148 654 ADAIQRLWPIFKAIFDIRAW-DMRTMESLCRACKYAVRTSK-RFMGITIGAIL 704 (959)
Q Consensus 654 ~~~~~~~~~~l~~il~~~~~-~~~i~e~~~~~l~~~~~~~~-~~~~~~l~~l~ 704 (959)
...+..+.|.+ ++.|.+ +..++-.+..|+-.++...| ..+.|++.++-
T Consensus 443 ~~ll~diaP~~---iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt 492 (516)
T KOG2956|consen 443 LNLLPDIAPCV---IQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLT 492 (516)
T ss_pred HHhhhhhhhHH---HHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhcc
Confidence 33334444544 455554 44677778888888998889 78888876653
No 91
>PRK09687 putative lyase; Provisional
Probab=74.42 E-value=1.2e+02 Score=32.08 Aligned_cols=212 Identities=15% Similarity=0.074 Sum_probs=109.8
Q ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHhcChhhHHHHHHHhccCCCChhHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHH
Q 002148 8 KEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSL 87 (959)
Q Consensus 8 ~~av~~l~~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~~~faa~~L~~ki~~~w~~l~~~~~~~lr~~L 87 (959)
+..+..| .++|...|..|...|.++. +++++..+..++.+ .++.+|.+|+..|-..-... .. ..+....|+.
T Consensus 26 ~~L~~~L-~d~d~~vR~~A~~aL~~~~-~~~~~~~l~~ll~~--~d~~vR~~A~~aLg~lg~~~-~~-~~~a~~~L~~-- 97 (280)
T PRK09687 26 DELFRLL-DDHNSLKRISSIRVLQLRG-GQDVFRLAIELCSS--KNPIERDIGADILSQLGMAK-RC-QDNVFNILNN-- 97 (280)
T ss_pred HHHHHHH-hCCCHHHHHHHHHHHHhcC-cchHHHHHHHHHhC--CCHHHHHHHHHHHHhcCCCc-cc-hHHHHHHHHH--
Confidence 3444444 5778889999999997765 78899999998864 57789999999987632211 11 2233333333
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHhhcccccc-CCccchHHHHHhcCCC-CCchhhHHHHhccccccc-cccc---c-
Q 002148 88 NTLLKKFHKGPPKVRTQISIAVAALAVHISAEDW-GGGGIVNWLRDEMNSH-PEFVPGFLELLTVLPEEV-FNYK---I- 160 (959)
Q Consensus 88 l~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~W-p~~~~~~~l~~~l~~~-~~~~~~~L~~L~~l~EE~-~~~~---~- 160 (959)
++.+ .....||...+.+|+.+..... .| +. .+..+...+... +........-|..+..+- ...- +
T Consensus 98 --l~~~--D~d~~VR~~A~~aLG~~~~~~~--~~~~~--a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~ 169 (280)
T PRK09687 98 --LALE--DKSACVRASAINATGHRCKKNP--LYSPK--IVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLK 169 (280)
T ss_pred --HHhc--CCCHHHHHHHHHHHhccccccc--ccchH--HHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhc
Confidence 2233 2445677777777776643322 23 22 333333332221 111112222222111100 0000 0
Q ss_pred cCChhHHHHHHHHHHH---hHHHHHHHHHHhhhhh--HhHHHHHHHHHHHHhccCCCCCcccccchhHHHHHhcCCCCch
Q 002148 161 AARPERRRQFEKELTS---QMEVALSTLTACLHIN--ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEIL 235 (959)
Q Consensus 161 ~l~~~~r~~l~~~l~~---~~~~vl~~l~~~l~~~--~~~~~~l~~~~sWi~~~~~~~~~~~~~~~ll~~~~~~L~~~~~ 235 (959)
.-...-|..--..|.. ..+.+...|...+.++ +++..++..+..+ .....++.++..|+++..
T Consensus 170 d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~------------~~~~av~~Li~~L~~~~~ 237 (280)
T PRK09687 170 DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALR------------KDKRVLSVLIKELKKGTV 237 (280)
T ss_pred CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHcc------------CChhHHHHHHHHHcCCch
Confidence 0001222222222322 2456666666666653 5676666666532 123466777777777777
Q ss_pred HHHHHHHHHHHH
Q 002148 236 SEASVNVISELI 247 (959)
Q Consensus 236 ~~~a~~~l~~ii 247 (959)
+..|++.+-++-
T Consensus 238 ~~~a~~ALg~ig 249 (280)
T PRK09687 238 GDLIIEAAGELG 249 (280)
T ss_pred HHHHHHHHHhcC
Confidence 666666654443
No 92
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.28 E-value=2.2e+02 Score=34.56 Aligned_cols=155 Identities=12% Similarity=0.200 Sum_probs=84.5
Q ss_pred cHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHh-ccC--CCHHHHHHHHHHHHHHHHHhhh---hhhCCHHHHHH
Q 002148 488 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTS-GMS--TSEDTAAAAALAFRHICDDCRK---KLCGYLDGLYN 561 (959)
Q Consensus 488 ~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~-~l~--~~~~v~~~A~~al~~lc~~c~~---~L~~~~~~ll~ 561 (959)
|-....+.+..+-.|++++...-. +.++..+....+ .+. ++. +...+...+..+|.-.++ .|.|+++.+++
T Consensus 480 s~~~tEaci~~~~sva~~~~~t~~--~~i~rl~~~~asik~S~~n~q-l~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~ 556 (982)
T KOG2022|consen 480 SLNRTEACIFQFQSVAEYLGETES--TWIPRLFETSASIKLSAPNPQ-LLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQ 556 (982)
T ss_pred HHHHHHHHHHHHHHHHhhcCcchh--HHHHHHHHhccccccccCChh-HHHHHHHHHHHHHHHHhcCCcccCchHHHHHH
Confidence 334566777778888887766533 356666655532 112 444 777777788877765554 45588888887
Q ss_pred HHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHH
Q 002148 562 VYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFA 641 (959)
Q Consensus 562 ~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~ 641 (959)
.+.+- +.-...+.++-.+. ++...-+..+..++++-....+...+. ...+....+.+||
T Consensus 557 ~Lh~s-----------k~s~q~i~tl~tlC-----~~C~~~L~py~d~~~a~~~e~l~~~~~-----~~S~~~klm~sIG 615 (982)
T KOG2022|consen 557 GLHNS-----------KESEQAISTLKTLC-----ETCPESLDPYADQFSAVCYEVLNKSNA-----KDSDRLKLMKSIG 615 (982)
T ss_pred HhcCc-----------hHHHHHHHHHHHHH-----HhhhhhCchHHHHHHHHHHHHhccccc-----CchHHHHHHHHHH
Confidence 76421 11111222222222 233444445556666666666654331 1123345678889
Q ss_pred HHhhhcCCcccHHHHHHHH-hHHHHHH
Q 002148 642 YIFRYVNHPEAVADAIQRL-WPIFKAI 667 (959)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~-~~~l~~i 667 (959)
.+.+... |+....++-++ -|++.++
T Consensus 616 yvls~~~-pEe~~kyl~~lin~il~ql 641 (982)
T KOG2022|consen 616 YVLSRLK-PEEIPKYLMKLINPILSQL 641 (982)
T ss_pred HHHHhcc-HHhHHHHHHHHHHHHHHHH
Confidence 8888776 55444443333 3444444
No 93
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=72.00 E-value=11 Score=31.43 Aligned_cols=56 Identities=25% Similarity=0.181 Sum_probs=43.6
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHhcChhhHHHHHHHhccCCCChhHHHHHHHHH
Q 002148 7 VKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTL 64 (959)
Q Consensus 7 v~~av~~l~~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~~~faa~~L 64 (959)
+...+..+..++|+..|.+|-..|.++. +++++.....++.+ +.+..+|..|+..|
T Consensus 32 ~~~~L~~~l~d~~~~vr~~a~~aL~~i~-~~~~~~~L~~~l~~-~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 32 AIPALIELLKDEDPMVRRAAARALGRIG-DPEAIPALIKLLQD-DDDEVVREAAAEAL 87 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCH-HHHTHHHHHHHHTC--SSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHcC-CCcHHHHHHHHhhc
Confidence 3444445557889999999999999986 78999999999986 45666788887765
No 94
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=71.07 E-value=1.5e+02 Score=31.71 Aligned_cols=128 Identities=14% Similarity=0.128 Sum_probs=78.6
Q ss_pred HHHHHHHhhcccCCc--cccchHHHhhhc--cCCC-CcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccCCC
Q 002148 456 ALFCIRAISTYVSVV--EAEVMPQVMALL--PKLP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS 530 (959)
Q Consensus 456 ~l~~l~~l~e~~~~~--~~~~l~~l~~~l--~~lp-~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~ 530 (959)
||+..+.+-+.+... .+..+..+++.+ +.+. .++.+|..++.++|-|+=.=.+.. .++++.++..+-. + +
T Consensus 3 cL~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a--~~~l~l~~~~~~~--~-~ 77 (298)
T PF12719_consen 3 CLSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELA--KEHLPLFLQALQK--D-D 77 (298)
T ss_pred HHHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHH--HHHHHHHHHHHHh--C-C
Confidence 455555555555522 223455677653 4443 478999999999999874322211 1234444443422 2 3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhh-C--------CHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhc
Q 002148 531 EDTAAAAALAFRHICDDCRKKLC-G--------YLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 593 (959)
Q Consensus 531 ~~v~~~A~~al~~lc~~c~~~L~-~--------~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~ 593 (959)
..++..|..++..+...-+.... . ....+++.+...+.. .+.+.+..+.||++.++-.
T Consensus 78 ~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-----~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 78 EEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDS-----ENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred HHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHhc
Confidence 34899999999888875543322 1 234677777777764 2567899999999987754
No 95
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=70.46 E-value=65 Score=31.46 Aligned_cols=54 Identities=13% Similarity=0.225 Sum_probs=44.0
Q ss_pred cHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHH
Q 002148 488 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDD 547 (959)
Q Consensus 488 ~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~lc~~ 547 (959)
||.+|.+++.++|..+ .++|. ++.+.++.+..++.+++ .|+..|...+.++...
T Consensus 1 ~~~vR~n~i~~l~DL~---~r~~~---~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~ 55 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLC---IRYPN---LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE 55 (178)
T ss_pred CHHHHHHHHHHHHHHH---HhCcH---HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc
Confidence 6889999999888654 66776 88899999999998874 3888988889888764
No 96
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=70.34 E-value=2e+02 Score=32.71 Aligned_cols=193 Identities=13% Similarity=0.151 Sum_probs=103.0
Q ss_pred ccchHHHhhhccC----CCC--cHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 002148 472 AEVMPQVMALLPK----LPQ--QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHIC 545 (959)
Q Consensus 472 ~~~l~~l~~~l~~----lp~--~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~~v~~~A~~al~~lc 545 (959)
+.++...+.++.. -|+ +|.+.++++.-|....+-.+.-|- .-..+++.+.+- +-.+++ .++|
T Consensus 149 ~S~iRaai~f~i~~GkkGpe~vpp~lvkvvl~~ia~vgeS~qyPPV---NWaalLsPLMRl-nfGeEv--------q~lC 216 (589)
T PF11229_consen 149 SSFIRAAIDFLIEAGKKGPESVPPSLVKVVLKPIATVGESYQYPPV---NWAALLSPLMRL-NFGEEV--------QQLC 216 (589)
T ss_pred hhHHHHHHHHHHHccccCCccCCHHHHHHHHHHhhhcCCCCCCCCc---cHHHHhhHHHhc-cccHHH--------HHHH
Confidence 4566666666532 343 677777777766554433333332 455566655441 112223 3344
Q ss_pred HHhh-hhh--hCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCC
Q 002148 546 DDCR-KKL--CGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGP 622 (959)
Q Consensus 546 ~~c~-~~L--~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~ 622 (959)
-.-. .+. ......|+..+.. .|--+.++...+.+++++++..+..+|+++++...+.+.-..++. . +.
T Consensus 217 LeiAvtQaqSSqsAa~fLg~Wls---Ppli~sLs~~tk~~L~~Sl~~wmkhVsedqiQ~Fve~l~vq~F~~---~-~~-- 287 (589)
T PF11229_consen 217 LEIAVTQAQSSQSAAMFLGSWLS---PPLIHSLSVNTKKYLFESLSLWMKHVSEDQIQAFVENLMVQQFKA---A-SR-- 287 (589)
T ss_pred HHHHHHhccccccHHHHHHhhcC---cchhhhhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhh---c-CC--
Confidence 2211 011 1223334433321 111124677889999999999999999998877666544433321 1 10
Q ss_pred CcccccCchhhhHHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhhh
Q 002148 623 EILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKR 694 (959)
Q Consensus 623 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~~~~~~~ 694 (959)
..........+-.+...++.|+|..-.+.-+....+.+++.++++ +.+.-+..+....+++.+
T Consensus 288 -------~~~~~lC~saLqGLsqAMKlP~P~~h~Ws~Lc~ttekIF~lLPn~--i~~~eveLYi~vAkCLSE 350 (589)
T PF11229_consen 288 -------PSNPELCQSALQGLSQAMKLPSPAQHCWSLLCETTEKIFDLLPNK--IQRNEVELYIGVAKCLSE 350 (589)
T ss_pred -------CCChHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHhCccc--ccHHHHHHHHHHHHHHhh
Confidence 111111234444445556678887777777777888888887664 233444444444444443
No 97
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=69.31 E-value=70 Score=30.59 Aligned_cols=70 Identities=13% Similarity=0.141 Sum_probs=49.2
Q ss_pred HHHHHHHhccCCCH--HHHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHh
Q 002148 518 SVLSILTSGMSTSE--DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVIT 592 (959)
Q Consensus 518 ~~l~~l~~~l~~~~--~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~ 592 (959)
-+++.+.+-++++. .....+..|+..+.+..+..-.||++.++..+...+.. .+...++.++.-++.+++
T Consensus 86 vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~-----~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 86 VVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRT-----CPDSLREFYFQQLADLVS 157 (160)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHh-----CCHHHHHHHHHHHHHHHH
Confidence 44455656666653 24557888888888776666689999999888888764 344667777777777664
No 98
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=66.93 E-value=41 Score=40.51 Aligned_cols=167 Identities=16% Similarity=0.155 Sum_probs=90.3
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhh--CC-----------HHHHHHHHHHHhhccCCCCCCHhhHHHHHHHH
Q 002148 521 SILTSGMSTSEDTAAAAALAFRHICDDCRKKLC--GY-----------LDGLYNVYRTAVNGEGSLKVSAEDSLHLVEAL 587 (959)
Q Consensus 521 ~~l~~~l~~~~~v~~~A~~al~~lc~~c~~~L~--~~-----------~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai 587 (959)
..++..+..|+ +...|+++|.-+..||...+. .| ...+...+.+... ..+...+....+++
T Consensus 818 ~klld~Ls~~~-~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~-----t~~~~~K~~yl~~L 891 (1030)
T KOG1967|consen 818 EKLLDLLSGPS-TGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFE-----TAPGSQKHNYLEAL 891 (1030)
T ss_pred HHHHHhcCCcc-ccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhc-----cCCccchhHHHHHH
Confidence 34446667777 899999999999988765443 22 2223333333322 23456788999999
Q ss_pred HHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCCcccHH-HHHHHHhHHHHH
Q 002148 588 SMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVA-DAIQRLWPIFKA 666 (959)
Q Consensus 588 ~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-~~~~~~~~~l~~ 666 (959)
++|+..+|.+...+-+..++.-+++. ++=. + ...+ ...++++.....-. +++. ....-+.|.+..
T Consensus 892 shVl~~vP~~vllp~~~~LlPLLLq~----Ls~~----D--~~v~-vstl~~i~~~l~~~---~tL~t~~~~Tlvp~lLs 957 (1030)
T KOG1967|consen 892 SHVLTNVPKQVLLPQFPMLLPLLLQA----LSMP----D--VIVR-VSTLRTIPMLLTES---ETLQTEHLSTLVPYLLS 957 (1030)
T ss_pred HHHHhcCCHHhhccchhhHHHHHHHh----cCCC----c--cchh-hhHhhhhhHHHHhc---cccchHHHhHHHHHHHh
Confidence 99999999755555555544444332 1111 0 1111 12344444433221 1211 223344454444
Q ss_pred HHHhhccc-HHHHHHHHHHHHHHHH-HhhhhhhhhHHHHHHHH
Q 002148 667 IFDIRAWD-MRTMESLCRACKYAVR-TSKRFMGITIGAILEEI 707 (959)
Q Consensus 667 il~~~~~~-~~i~e~~~~~l~~~~~-~~~~~~~~~l~~l~~~l 707 (959)
+-....++ ..+++.+..++...-+ .+...+.|+-|.++..+
T Consensus 958 ls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al 1000 (1030)
T KOG1967|consen 958 LSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRAL 1000 (1030)
T ss_pred cCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHh
Confidence 33333333 4577777788776666 34455666666655544
No 99
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=65.42 E-value=3.7e+02 Score=34.08 Aligned_cols=272 Identities=16% Similarity=0.191 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHHHHhcC-------hhhHHHHHHHhccCCCChhHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHHHHHHH
Q 002148 20 DAVRMQADRWLQDFQHT-------IDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLK 92 (959)
Q Consensus 20 ~~~r~~A~~~L~~~q~s-------~~aw~~~~~lL~~~~~~~~~~~faa~~L~~ki~~~w~~l~~~~~~~lr~~Ll~~l~ 92 (959)
.+.|.+|-+.|+.+-+- +........++.+ ....||--|..||...+. .-..+++.+..-.-++|+-.|.
T Consensus 437 ~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~D--s~a~Vra~Al~Tlt~~L~-~Vr~~~~~daniF~eYlfP~L~ 513 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMD--SEADVRATALETLTELLA-LVRDIPPSDANIFPEYLFPHLN 513 (1431)
T ss_pred chhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcC--chHHHHHHHHHHHHHHHh-hccCCCcccchhhHhhhhhhhH
Confidence 35677888888887652 2223445666654 455799999999987654 2346788888888999999999
Q ss_pred HhcC--CChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcC-----CCCCchhhHHHHhcccccccccccccCChh
Q 002148 93 KFHK--GPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMN-----SHPEFVPGFLELLTVLPEEVFNYKIAARPE 165 (959)
Q Consensus 93 ~~~~--~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~l~-----~~~~~~~~~L~~L~~l~EE~~~~~~~l~~~ 165 (959)
.+.. .+..||--.+.+||.++...+- |...- +.+. +.++.- ..+|+-. ..
T Consensus 514 ~l~~d~~~~~vRiayAsnla~LA~tA~r-------Fle~~-q~~~~~g~~n~~nse--------t~~~~~~-------~~ 570 (1431)
T KOG1240|consen 514 HLLNDSSAQIVRIAYASNLAQLAKTAYR-------FLELT-QELRQAGMLNDPNSE--------TAPEQNY-------NT 570 (1431)
T ss_pred hhhccCccceehhhHHhhHHHHHHHHHH-------HHHHH-HHHHhcccccCcccc--------ccccccc-------ch
Confidence 8763 4567888888999999987652 33222 1111 122110 2233221 22
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhhhh--HhHHHHHHHHHHH-HhccCCCCCcccccchhHHHHHhcCCCCc--hHHHHH
Q 002148 166 RRRQFEKELTSQMEVALSTLTACLHIN--ELKEQVLEAFASW-LRLKHRIPGSVLASHPLVLTALSSLHSEI--LSEASV 240 (959)
Q Consensus 166 ~r~~l~~~l~~~~~~vl~~l~~~l~~~--~~~~~~l~~~~sW-i~~~~~~~~~~~~~~~ll~~~~~~L~~~~--~~~~a~ 240 (959)
.++++++.++ +.....+.++ -++...++.+.-- ..+| ... .+.-++..+..+|++.+ ++.+-.
T Consensus 571 ~~~~L~~~V~-------~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFG-k~k----sND~iLshLiTfLNDkDw~LR~aFf 638 (1431)
T KOG1240|consen 571 ELQALHHTVE-------QMVSSLLSDSPPIVKRALLESIIPLCVFFG-KEK----SNDVILSHLITFLNDKDWRLRGAFF 638 (1431)
T ss_pred HHHHHHHHHH-------HHHHHHHcCCchHHHHHHHHHHHHHHHHhh-hcc----cccchHHHHHHHhcCccHHHHHHHH
Confidence 3333433332 2333334443 2444455554432 3333 222 34457777788888653 454444
Q ss_pred HHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhhhcCCCHHHHHHHHHHHHHhhhHHHHHHhcC---CchHHHH
Q 002148 241 NVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATG---SDESMLI 317 (959)
Q Consensus 241 ~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~l~~~~~d~e~~~~l~~l~~~~~~~~~~~l~~~---~~~~~~~ 317 (959)
+-|.-+--.-+. ..+=+.++|.+ ++.+ .|.+|-.+ +...+....++..+ -..+.++
T Consensus 639 dsI~gvsi~VG~---------rs~seyllPLl---~Q~l--tD~EE~Vi-------v~aL~~ls~Lik~~ll~K~~v~~i 697 (1431)
T KOG1240|consen 639 DSIVGVSIFVGW---------RSVSEYLLPLL---QQGL--TDGEEAVI-------VSALGSLSILIKLGLLRKPAVKDI 697 (1431)
T ss_pred hhccceEEEEee---------eeHHHHHHHHH---HHhc--cCcchhhH-------HHHHHHHHHHHHhcccchHHHHHH
Confidence 444322211110 00111223321 2222 12222222 22222333333221 1246688
Q ss_pred HHHHHhhccCCCcchhhhhHHhHHHhHHHHhhc
Q 002148 318 VHALLEVASHPEYDIASMTFNFWHSLQVILTKR 350 (959)
Q Consensus 318 l~~ll~~~~~~~~~v~~~~l~fW~~l~~~~~~~ 350 (959)
++..+-+..||+.=|...++.|.....+.+...
T Consensus 698 ~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~a 730 (1431)
T KOG1240|consen 698 LQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAA 730 (1431)
T ss_pred HHhhhhheeCchHHHHHHHHHHHHHHHhhhhhh
Confidence 888889999999999999999988777766443
No 100
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=61.93 E-value=2.1e+02 Score=33.25 Aligned_cols=163 Identities=12% Similarity=0.106 Sum_probs=90.7
Q ss_pred HHHhHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCC--cchhHhHHHHHHHhCCCcc
Q 002148 658 QRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQ--PCFLYLSSEVIKIFGSDPS 735 (959)
Q Consensus 658 ~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~--~~~L~l~~~li~~~~~~~~ 735 (959)
.+++.++.++++. ..++.++++....+-+.+.. -+.=.-+...+++.+...|...|. ...|.|+..+++. |+.+.
T Consensus 191 ~qIF~lc~qiLE~-~~~~SLi~ATLesllrfl~w-iPl~yIfeTnIieLv~~~f~s~pd~r~~tl~CLtEi~~L-~~~pq 267 (1053)
T COG5101 191 PQIFGLCKQILEY-SRDESLIEATLESLLRFLEW-IPLDYIFETNIIELVLEHFNSMPDTRVATLSCLTEIVDL-GRHPQ 267 (1053)
T ss_pred HHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHhh-CchhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhh-ccCcc
Confidence 4666677777664 44666777765544433322 111123456788888888888776 5567777776654 55544
Q ss_pred chHHHHHHHHHHHHHHHHhhc-----Cc-------ccCC-CCCCcHHHHHHHHHHHHhhCCCcccCcCChHHH---HHHH
Q 002148 736 CASYLHNLIEALFKRTTCLLT-----SI-------EEFT-SRPDVADDCFLLASRCIRYCPQLFIPSSVFPSL---VDCS 799 (959)
Q Consensus 736 ~~~~l~~~~~~l~~~~~~~l~-----~~-------~~~~-~~pDl~~~~f~l~~~~~~~~p~~~l~s~~l~~~---~~~~ 799 (959)
........+...++.+..... +. .+.+ ...+.+..+-.|++.+...+-..+-..+..+.+ .++.
T Consensus 268 ~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~Fvq~LA~fL~s~~~~~~~lLE~~e~~e~llnah~YL 347 (1053)
T COG5101 268 ENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIFVQKLAQFLSSLYEVYISLLEAREMAENLLNAHGYL 347 (1053)
T ss_pred cchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHh
Confidence 333333333333344322211 00 1111 223345555566666666554444333323222 2344
Q ss_pred HHhccCCCchhHHHHHHHHHHhhc
Q 002148 800 MIGITVQHREASNSILTFLSDIFD 823 (959)
Q Consensus 800 ~~~l~~~~~~~~~~~~~fl~~li~ 823 (959)
+.-....+++..+.++..|.+++.
T Consensus 348 iqiSrInereiFkt~leyW~klVa 371 (1053)
T COG5101 348 IQISRINEREIFKTALEYWNKLVA 371 (1053)
T ss_pred hhhhhccHHHHHHHHHHHHHHHHH
Confidence 555568999999999999999875
No 101
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=59.38 E-value=5.2e+02 Score=33.68 Aligned_cols=226 Identities=14% Similarity=0.102 Sum_probs=106.1
Q ss_pred HHHHHHHHhhhcCC--cccHHHHHHHHhHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhhhh---hhhhHHHHHHHH
Q 002148 636 HIDRFAYIFRYVNH--PEAVADAIQRLWPIFKAIFDIR---AWDMRTMESLCRACKYAVRTSKRF---MGITIGAILEEI 707 (959)
Q Consensus 636 ~l~~l~~~~~~~~~--~~~~~~~~~~~~~~l~~il~~~---~~~~~i~e~~~~~l~~~~~~~~~~---~~~~l~~l~~~l 707 (959)
.+++|..++..+.+ .++ ...+.+.|+...+...+ ..|.+|+--+.-|+..++|-+.+. ..+.+-.++.++
T Consensus 22 ll~rLk~l~~~l~~~~qd~--~~~~~~~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~ 99 (1266)
T KOG1525|consen 22 LLKRLKKLANCLASLDQDN--LDLASLLPLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLI 99 (1266)
T ss_pred HHHHHHHHHHHHhhcccCc--hhHHHHHHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH
Confidence 35555555554432 122 34466777777766553 234455545555566777766543 333444555554
Q ss_pred HHHHhhcCCcchhHhHHHHHHHhCCCc-cchHHHHHHHHHHHHHHHHhhcCcccCCCCCCcHHHHHHHHHHHHh-hCCCc
Q 002148 708 QGLYQQHQQPCFLYLSSEVIKIFGSDP-SCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIR-YCPQL 785 (959)
Q Consensus 708 ~~~~~~~~~~~~L~l~~~li~~~~~~~-~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pDl~~~~f~l~~~~~~-~~p~~ 785 (959)
...|.. .|+.. .+...-..+++.+...-+.++. ...+.-|++.++|+++..+++ .+|..
T Consensus 100 ~~q~~g----------------L~d~~sp~f~r~~~lletl~~~k~~l~~---~l~d~~e~~~~~f~~f~d~~~~~~~~~ 160 (1266)
T KOG1525|consen 100 LSQFSG----------------LGDVESPYFKRYFYLLETLAKVKFCLLM---LLEDCQELVHELFRTFFDLARKGHPKK 160 (1266)
T ss_pred HHHHhh----------------ccCCCCcchhhHHHHHHHHHHhHHHhee---eccchHHHHHHHHHHHHHHHhccccHH
Confidence 444332 12111 0222222333333322233322 123455688899999988886 56665
Q ss_pred ccCcCChHHHHHHHHHhccCCCchhHHHHHHHHHHhhcCcCCCCchhhHHHHHHHHhhcc-------HHHHHHHHHHccc
Q 002148 786 FIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRG-------ASITRILIASLTG 858 (959)
Q Consensus 786 ~l~s~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~g-------~~lv~~ll~~l~~ 858 (959)
++. +++.+...+...+.-.....--.|.++++...+ ..++-......++...+ ...+...+..- .
T Consensus 161 v~~------~~~i~~~li~e~d~v~~e~L~~ll~~lv~~~~~-~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~-~ 232 (1266)
T KOG1525|consen 161 VFN------MLDIAIMLITEEDTVQSELLDVLLENLVKPGRD-TIKEADKLASDLIERCADNLEDTIANFLNSCLTEY-K 232 (1266)
T ss_pred HHH------HHHHHHHHHHhhccchHHHHHHHHHHhccCCCC-ccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhc-c
Confidence 543 444443333333333333333445555543321 11111111112222111 11222222221 1
Q ss_pred CCCCCCcccHHHHHHHHHHHhhHHHHHHHHHH
Q 002148 859 ALPSSRLETVTYALLALTRAYGVRSLEWAKES 890 (959)
Q Consensus 859 ~~~~~~~~~~a~il~~l~~~~~~~~~~wl~~~ 890 (959)
..-.+....+-++++.+++..|..+..-+.+.
T Consensus 233 s~~~~~~~~~he~i~~L~~~~p~ll~~vip~l 264 (1266)
T KOG1525|consen 233 SRQSSLKIKYHELILELWRIAPQLLLAVIPQL 264 (1266)
T ss_pred ccccchhhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 12345667788999999999996655544443
No 102
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=59.32 E-value=1.7e+02 Score=35.27 Aligned_cols=114 Identities=18% Similarity=0.207 Sum_probs=66.7
Q ss_pred CCCCcHHHHHHHHHHHHhhCCCcc---cCcCChHHHHHHHHHhccCCCchhHHHHHHHHHHhhcCcCCCCchhhHHHHHH
Q 002148 763 SRPDVADDCFLLASRCIRYCPQLF---IPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDS 839 (959)
Q Consensus 763 ~~pDl~~~~f~l~~~~~~~~p~~~---l~s~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~li~~~~~~~~~~~~~~~~~ 839 (959)
..|+.+-..+.|++.+++..|.-+ ...++|..++.|... -.+..++-+|+.++.-++=..-+ ..
T Consensus 80 ~~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~---D~~~~~~~~al~~LimlLP~ip~----~l------ 146 (668)
T PF04388_consen 80 VKPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQF---DTSITVVSSALLVLIMLLPHIPS----SL------ 146 (668)
T ss_pred cCchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhh---cccHHHHHHHHHHHHHHhccccc----hh------
Confidence 357888999999999999887643 456788888888521 23444556777777777732111 11
Q ss_pred HHhhccHHHHHHHHHHcccCCC--CCC-----cc---cHHHHHHHHHHHhhHHHHHHHHHHH
Q 002148 840 VIIPRGASITRILIASLTGALP--SSR-----LE---TVTYALLALTRAYGVRSLEWAKESV 891 (959)
Q Consensus 840 ~~~~~g~~lv~~ll~~l~~~~~--~~~-----~~---~~a~il~~l~~~~~~~~~~wl~~~l 891 (959)
..+.+.|.......+.+... ... +. .+-..+..|+-.||-.|..||++.+
T Consensus 147 --~~~L~~Lf~If~Rl~~W~~~~~~~~~~~~~~~l~~~~~~lFt~LYGlyP~NF~~flr~~y 206 (668)
T PF04388_consen 147 --GPHLPDLFNIFGRLLSWERKNPGSVPEVYLIHLQASVYALFTRLYGLYPCNFLSFLRQHY 206 (668)
T ss_pred --hHHHHHHHHHHHHHHHcccCCCCCccccccccchhhHHHHHHHHHhcccchHHHHHHHHH
Confidence 12222333322222334331 111 11 1223556667788999999999755
No 103
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=57.80 E-value=93 Score=26.55 Aligned_cols=74 Identities=9% Similarity=0.140 Sum_probs=52.8
Q ss_pred cCCCH-HHHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHH
Q 002148 527 MSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEM 605 (959)
Q Consensus 527 l~~~~-~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ 605 (959)
+++|. +++.++-..++++++... .-....+.++..+...+..+ ++-.-+..+.|++.++...|.+-....++.
T Consensus 12 L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~-----DsyVYL~aI~~L~~La~~~p~~vl~~L~~~ 85 (92)
T PF10363_consen 12 LNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDE-----DSYVYLNAIKGLAALADRHPDEVLPILLDE 85 (92)
T ss_pred ccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCC-----CchHHHHHHHHHHHHHHHChHHHHHHHHHH
Confidence 34542 389999999999998766 34456788888888877642 355678899999999988876444444433
Q ss_pred h
Q 002148 606 L 606 (959)
Q Consensus 606 l 606 (959)
+
T Consensus 86 y 86 (92)
T PF10363_consen 86 Y 86 (92)
T ss_pred H
Confidence 3
No 104
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=56.94 E-value=1.1e+02 Score=26.93 Aligned_cols=54 Identities=11% Similarity=0.137 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCC-cchhHhHHHHHHHhCC
Q 002148 679 ESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQ-PCFLYLSSEVIKIFGS 732 (959)
Q Consensus 679 e~~~~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~-~~~L~l~~~li~~~~~ 732 (959)
.++.+.++.+++..|.++....|++...+....+.... ...+.+-..++.....
T Consensus 33 ~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L~~ 87 (107)
T smart00802 33 KRALRSIGFLIKLMGKHISSALPQIMACLQSALEIPELRSLALRCWHVLIKTLKE 87 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhCCH
Confidence 44667777888888999999999999988887775443 2345666666766654
No 105
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=56.71 E-value=5.8e+02 Score=33.42 Aligned_cols=74 Identities=12% Similarity=0.072 Sum_probs=48.8
Q ss_pred hHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhc
Q 002148 515 ILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 593 (959)
Q Consensus 515 ~l~~~l~~l~~~l~~~~-~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~ 593 (959)
.+...|..++.+++.+. .++..|-+++..+++.-.. +...-+.-......+.. -+...|..+++-+|..+-+
T Consensus 813 sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~-vL~~~dvq~~Vh~R~~D------ssasVREAaldLvGrfvl~ 885 (1692)
T KOG1020|consen 813 SFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPS-VLSRPDVQEAVHGRLND------SSASVREAALDLVGRFVLS 885 (1692)
T ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChH-hhcCHHHHHHHHHhhcc------chhHHHHHHHHHHhhhhhc
Confidence 56777888888888764 4888999999888874332 22233333333333332 2467899999999988877
Q ss_pred CC
Q 002148 594 LP 595 (959)
Q Consensus 594 ~p 595 (959)
.|
T Consensus 886 ~~ 887 (1692)
T KOG1020|consen 886 IP 887 (1692)
T ss_pred cH
Confidence 55
No 106
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=55.09 E-value=3.4e+02 Score=30.20 Aligned_cols=39 Identities=0% Similarity=-0.101 Sum_probs=32.5
Q ss_pred ccCcCChHHHHHHHHHhccCCCchhHHHHHHHHHHhhcC
Q 002148 786 FIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDL 824 (959)
Q Consensus 786 ~l~s~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~li~~ 824 (959)
+...+.++..+.....|....++.+-..|+..|..++..
T Consensus 266 ~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~ 304 (372)
T PF12231_consen 266 LDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYA 304 (372)
T ss_pred hhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 334567888888888899999999999999999999863
No 107
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=53.88 E-value=20 Score=23.25 Aligned_cols=21 Identities=24% Similarity=0.202 Sum_probs=17.1
Q ss_pred CCCcchhhHHHHHHHHhhccc
Q 002148 447 HNEWRPAEAALFCIRAISTYV 467 (959)
Q Consensus 447 ~~~w~~~Ea~l~~l~~l~e~~ 467 (959)
+++|.-++++.++++.+++.+
T Consensus 11 D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 11 DPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp -SSHHHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHHHHhhC
Confidence 678999999999999988753
No 108
>PF12422 Condensin2nSMC: Condensin II non structural maintenance of chromosomes subunit; InterPro: IPR024741 Subunit G2 is a non-SMC subunit of condensin II, which is involved in maintenance of the structural integrity of chromosomes. Condensin II is made up of SMC (structural maintenance of chromosomes) and non-SMC subunits. The non-SMC subunits bind to the catalytic ends of the SMC subunit dimer. The condensin holocomplex is able to introduce superhelical tension into DNA in an ATP hydrolysis- dependent manner, resulting in the formation of positive supercoils in the presence of topoisomerase I and of positive knots in the presence of topoisomerase II [].; GO: 0005634 nucleus
Probab=53.42 E-value=44 Score=31.64 Aligned_cols=86 Identities=13% Similarity=0.034 Sum_probs=51.9
Q ss_pred HHHHHcccCCCCCCcccHHHHHHHHHHHh-hHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCCchhhhHHHHH
Q 002148 851 ILIASLTGALPSSRLETVTYALLALTRAY-GVRSLEWAKESVSLIPLTALAEVERSRFLQALSEAASGVDVNAAMAPVEE 929 (959)
Q Consensus 851 ~ll~~l~~~~~~~~~~~~a~il~~l~~~~-~~~~~~wl~~~l~~~p~~~~~~~~~~~f~~~l~~~~~~~~~~~f~~~l~~ 929 (959)
+++.+.++..+++.++.++++++.-++.. ++...+--...++ .++..-..+....-..++|+.|..
T Consensus 36 ~~i~~~~~~~~~~~le~y~ei~~~aWk~a~~~~~~~~e~~~iq-------------~~~~~a~~~~~~~~~~~~R~~L~~ 102 (152)
T PF12422_consen 36 KLIKCQIPQVSKSVLELYGEILFRAWKKASKDKLEEIEEVCIQ-------------DLMEAAIHLEYLPLHSKFREVLLS 102 (152)
T ss_pred HHHHHHcccccHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHH-------------HHHHHhHHhcchHhHHHHHHHHHH
Confidence 44555557778889999999999998887 3322222122221 111111111111223577888888
Q ss_pred HHHHHHhhhhHHHHHHhccCC
Q 002148 930 LSDVCRRNRTVQEIVQGALKP 950 (959)
Q Consensus 930 F~~~~r~~~~~~~~~~~~~~~ 950 (959)
|-... +...+|.|+..+.||
T Consensus 103 f~~~k-~~~~v~~mL~rl~~P 122 (152)
T PF12422_consen 103 FHSQK-KRKGVDEMLLRLYEP 122 (152)
T ss_pred HHhcc-cccchHHHHHHHHHH
Confidence 88666 677788888888777
No 109
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=52.84 E-value=4.4e+02 Score=30.86 Aligned_cols=19 Identities=11% Similarity=0.060 Sum_probs=11.0
Q ss_pred cccHHHHHHHHHHHHHHHH
Q 002148 672 AWDMRTMESLCRACKYAVR 690 (959)
Q Consensus 672 ~~~~~i~e~~~~~l~~~~~ 690 (959)
..++.++|++..+++.-+.
T Consensus 144 ~~de~~Re~~lkFl~~kl~ 162 (556)
T PF05918_consen 144 SGDEQVRERALKFLREKLK 162 (556)
T ss_dssp HS-HHHHHHHHHHHHHHGG
T ss_pred cCchHHHHHHHHHHHHHHh
Confidence 3556677877766654333
No 110
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=50.54 E-value=2.8e+02 Score=33.98 Aligned_cols=143 Identities=14% Similarity=0.171 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHhhcc-CCCCCCCCChhhhHHHHHHHHHhhHHHHHhh-hccChHHHHHHHHHHHHHhhhhcCCCCCCcch
Q 002148 375 SAYESLVSLVSFRVQ-YPQDYQDLSLEDLKEFKHTRYAVADVLIDAA-SVLGGDATLKILYIKFVEGVACCGNKHNEWRP 452 (959)
Q Consensus 375 ~~~~~Ll~~l~~k~~-~p~d~~~~~~d~~~~f~~~R~~~~d~l~~~~-~il~~~~~l~~l~~~l~~~~~~~~~~~~~w~~ 452 (959)
.+|.++++++..+.. -|.+ ... -|-..++.++..+- .+++| -+..+.+.|-+.+. -.+
T Consensus 863 RfF~~ivP~l~~~~~t~~~~-------~K~---~yl~~LshVl~~vP~~vllp--~~~~LlPLLLq~Ls--------~~D 922 (1030)
T KOG1967|consen 863 RFFCDIVPILVSKFETAPGS-------QKH---NYLEALSHVLTNVPKQVLLP--QFPMLLPLLLQALS--------MPD 922 (1030)
T ss_pred HHHHhhHHHHHHHhccCCcc-------chh---HHHHHHHHHHhcCCHHhhcc--chhhHHHHHHHhcC--------CCc
Confidence 478888998888776 2211 111 12233333443221 12332 22334444444421 122
Q ss_pred hhHHHHHHHHhhcccCCc---cccchHHHhhhccCCCC----c-HHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHH
Q 002148 453 AEAALFCIRAISTYVSVV---EAEVMPQVMALLPKLPQ----Q-PQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILT 524 (959)
Q Consensus 453 ~Ea~l~~l~~l~e~~~~~---~~~~l~~l~~~l~~lp~----~-~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~ 524 (959)
.++-+..+..+...+... .++.+..++..+..++. + -.||.+++.+++...+.+... ....+-+.|+..+.
T Consensus 923 ~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~-~l~~fr~~Vl~al~ 1001 (1030)
T KOG1967|consen 923 VIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTK-SLLSFRPLVLRALI 1001 (1030)
T ss_pred cchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCc-ccccccHHHHHHhh
Confidence 333333344343333322 23566777777666542 2 469999999999999877653 22236789999999
Q ss_pred hccCCCHH-HHHHHH
Q 002148 525 SGMSTSED-TAAAAA 538 (959)
Q Consensus 525 ~~l~~~~~-v~~~A~ 538 (959)
+.++++++ |+..|+
T Consensus 1002 k~LdDkKRlVR~eAv 1016 (1030)
T KOG1967|consen 1002 KILDDKKRLVRKEAV 1016 (1030)
T ss_pred hccCcHHHHHHHHHH
Confidence 99999974 444443
No 111
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.04 E-value=5.4e+02 Score=31.13 Aligned_cols=259 Identities=9% Similarity=0.062 Sum_probs=122.4
Q ss_pred hHHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhh
Q 002148 634 TVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQ 713 (959)
Q Consensus 634 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~ 713 (959)
..+|..++.++. | +....+.|-++.++.. .++-|+.++..|..++++.....+..|++.....+..
T Consensus 125 glAL~alg~i~s----~----EmardlapeVe~Ll~~--~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~e---- 190 (866)
T KOG1062|consen 125 GLALCALGNICS----P----EMARDLAPEVERLLQH--RDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCE---- 190 (866)
T ss_pred HHHHHHhhccCC----H----HHhHHhhHHHHHHHhC--CCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhh----
Confidence 345666666643 2 3344666777777766 4566788888888787776555555555544433321
Q ss_pred cCCcchhHhHHHHHHHhCCCccchHHHHHHHHHHHHHHHHhhcCcccCCCCCCcHHHHHHHHHHHHhh-CCCcccCcCCh
Q 002148 714 HQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRY-CPQLFIPSSVF 792 (959)
Q Consensus 714 ~~~~~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pDl~~~~f~l~~~~~~~-~p~~~l~s~~l 792 (959)
.+|+-.+..+.-+.+.....+ ...+.+-|++.+|+..+..+... +|...--+..-
T Consensus 191 k~hGVL~~~l~l~~e~c~~~~------------------------~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~ 246 (866)
T KOG1062|consen 191 KHHGVLIAGLHLITELCKISP------------------------DALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGIS 246 (866)
T ss_pred cCCceeeeHHHHHHHHHhcCH------------------------HHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCC
Confidence 122221111111111111111 01111223666666666666652 33222111122
Q ss_pred HHHHHH----HHHhccCCCchhHHHHHHHHHHhhcCcCCCCchhhHHHHHHHHhhccHHHHHHHHHHcccCCCCCCc-cc
Q 002148 793 PSLVDC----SMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRL-ET 867 (959)
Q Consensus 793 ~~~~~~----~~~~l~~~~~~~~~~~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~l~~~~~~~~~-~~ 867 (959)
++++++ .+.-+...+.++.......|.+..+.+.+.+.. |..++..++..+..--|.+.+ ..
T Consensus 247 dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~-------------GnAILYE~V~TI~~I~~~~~Lrvl 313 (866)
T KOG1062|consen 247 DPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNA-------------GNAILYECVRTIMDIRSNSGLRVL 313 (866)
T ss_pred chHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccc-------------hhHHHHHHHHHHHhccCCchHHHH
Confidence 233333 133355678888888888888888765443322 222333333333222222222 22
Q ss_pred HHHHHHHH-------------------HHHhhHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCCchhhhHHHH
Q 002148 868 VTYALLAL-------------------TRAYGVRSLEWAKESVSLIPLTALAEVERSRFLQALSEAASGVDVNAAMAPVE 928 (959)
Q Consensus 868 ~a~il~~l-------------------~~~~~~~~~~wl~~~l~~~p~~~~~~~~~~~f~~~l~~~~~~~~~~~f~~~l~ 928 (959)
.+++|.++ +...|....+.=..++.-+- ..++..|.+-++-.+...+.+|.+-.-+-+-
T Consensus 314 ainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~--DpD~SIkrralELs~~lvn~~Nv~~mv~eLl 391 (866)
T KOG1062|consen 314 AINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLK--DPDVSIKRRALELSYALVNESNVRVMVKELL 391 (866)
T ss_pred HHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 33444443 33333332222222222222 1255555665555555444556666666667
Q ss_pred HHHHHHHhhhhHHHHHHh
Q 002148 929 ELSDVCRRNRTVQEIVQG 946 (959)
Q Consensus 929 ~F~~~~r~~~~~~~~~~~ 946 (959)
+|...| -+.-+.++.++
T Consensus 392 ~fL~~~-d~~~k~~~as~ 408 (866)
T KOG1062|consen 392 EFLESS-DEDFKADIASK 408 (866)
T ss_pred HHHHhc-cHHHHHHHHHH
Confidence 777777 33334444443
No 112
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.90 E-value=5.9e+02 Score=31.18 Aligned_cols=186 Identities=9% Similarity=0.078 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHhhhhHHhhC-CCChhhHHHHHHHHHhccCCCHH-HHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHH
Q 002148 489 PQLLQTVCLTIGAYSKWFDAA-SSDPSILASVLSILTSGMSTSED-TAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTA 566 (959)
Q Consensus 489 ~~v~~t~~~~ig~y~~~l~~~-p~~~~~l~~~l~~l~~~l~~~~~-v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~ 566 (959)
+.++..++..+. +|+... +........++......+.+-+. |-..|-.++..+|+-..+.+ ++.+.+.|.+.
T Consensus 741 vpik~~gL~~l~---~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~i---l~dL~e~Y~s~ 814 (982)
T KOG4653|consen 741 VPIKGYGLQMLR---HLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDI---LPDLSEEYLSE 814 (982)
T ss_pred ccchHHHHHHHH---HHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhh---HHHHHHHHHhc
Confidence 346666666654 566632 11112456778888777776442 66777788888888644332 44455555443
Q ss_pred hhccCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhh
Q 002148 567 VNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRY 646 (959)
Q Consensus 567 ~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 646 (959)
-+ ....+.+..+=|+++.++.+.++ ....+..++++..-..+..+ + ...| +..+..+|.+.+.
T Consensus 815 k~-----k~~~d~~lkVGEai~k~~qa~Ge-----l~~~y~~~Li~tfl~gvrep----d-~~~R--aSS~a~lg~Lcq~ 877 (982)
T KOG4653|consen 815 KK-----KLQTDYRLKVGEAILKVAQALGE-----LVFKYKAVLINTFLSGVREP----D-HEFR--ASSLANLGQLCQL 877 (982)
T ss_pred cc-----CCCccceehHHHHHHHHHHHhcc-----HHHHHHHHHHHHHHHhcCCc----h-HHHH--HhHHHHHHHHHHH
Confidence 22 23467888999999999988753 33333444444444444321 1 1111 2334444444333
Q ss_pred cCCcccHHHHHHHHhHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhhhhhhhhH
Q 002148 647 VNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITI 700 (959)
Q Consensus 647 ~~~~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~~~~~~~~~~~~l 700 (959)
.... +..++-++...+..+.+ -.+...++.++..+++..++..|..+.|++
T Consensus 878 ~a~~--vsd~~~ev~~~Il~l~~-~d~s~~vRRaAv~li~~lL~~tg~dlLpil 928 (982)
T KOG4653|consen 878 LAFQ--VSDFFHEVLQLILSLET-TDGSVLVRRAAVHLLAELLNGTGEDLLPIL 928 (982)
T ss_pred Hhhh--hhHHHHHHHHHHHHHHc-cCCchhhHHHHHHHHHHHHhccchhhHHHH
Confidence 2210 11122222222222222 245557788888999999998887777754
No 113
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.46 E-value=5.6e+02 Score=30.81 Aligned_cols=66 Identities=26% Similarity=0.306 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhhcCCcchhHhHHHHHHHhCCCcc-chHHHHHHHHHHHHHHHHhhcCcccCCCCCCcHHH---HHHHH
Q 002148 700 IGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPS-CASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADD---CFLLA 775 (959)
Q Consensus 700 l~~l~~~l~~~~~~~~~~~~L~l~~~li~~~~~~~~-~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pDl~~~---~f~l~ 775 (959)
.+.+++.+...|.....---+.++...|..|++.+. ..+.+ +.++.... +-.++||+++. |.+++
T Consensus 458 a~elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~~tq~~l--------~~vL~~~~---~d~~~~dlrDr~l~Y~RlL 526 (734)
T KOG1061|consen 458 ALELLESFLENFKDETAEVQLELLTAAIKLFLKKPTETQELL--------QGVLPLAT---ADTDNPDLRDRGLIYWRLL 526 (734)
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCccHHHHH--------HHHHhhhh---ccccChhhhhhHHHHHHHh
Confidence 455666656666554444458888999999888752 22322 33333222 23567888776 44554
Q ss_pred H
Q 002148 776 S 776 (959)
Q Consensus 776 ~ 776 (959)
+
T Consensus 527 s 527 (734)
T KOG1061|consen 527 S 527 (734)
T ss_pred h
Confidence 3
No 114
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=46.76 E-value=48 Score=30.88 Aligned_cols=133 Identities=10% Similarity=0.068 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHH-hhhhhhhhHHHHHHHHHHHHhhcCCcchhHhHHHHHHHhCCC--cc----chHHHHHHHHHHHH
Q 002148 677 TMESLCRACKYAVRT-SKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSD--PS----CASYLHNLIEALFK 749 (959)
Q Consensus 677 i~e~~~~~l~~~~~~-~~~~~~~~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~~~~~--~~----~~~~l~~~~~~l~~ 749 (959)
|+.++|.++..+... +...-..+++.+++.+... ..+...+|.++..+.+.+++. .. -...+.+.+..-..
T Consensus 4 i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~~--~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~ 81 (148)
T PF08389_consen 4 IRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQSS--PQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSP 81 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHChhhCchHHHHHHHHhccc--hhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHH
Confidence 455666666665443 3333334455555543321 112234677888888887651 11 12223333333333
Q ss_pred HHHHhhcC-c-ccCCC-CCCcHHHHHHHHHHHHhhCCCc-ccCcCChHHHHHHHHHhccCCCchhHHHHHHH
Q 002148 750 RTTCLLTS-I-EEFTS-RPDVADDCFLLASRCIRYCPQL-FIPSSVFPSLVDCSMIGITVQHREASNSILTF 817 (959)
Q Consensus 750 ~~~~~l~~-~-~~~~~-~pDl~~~~f~l~~~~~~~~p~~-~l~s~~l~~~~~~~~~~l~~~~~~~~~~~~~f 817 (959)
.+++.+.+ . ..... +++++...+..+..+++..|.. +..+++++.+++. + +++.....|+.+
T Consensus 82 ~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~----l--~~~~~~~~A~~c 147 (148)
T PF08389_consen 82 DILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQL----L--QSPELREAAAEC 147 (148)
T ss_dssp HHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHH----T--TSCCCHHHHHHH
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHH----c--CCHHHHHHHHHh
Confidence 34443332 1 11222 2778888888888888855533 3344444444443 3 333334455544
No 115
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.15 E-value=6.2e+02 Score=30.68 Aligned_cols=62 Identities=6% Similarity=-0.047 Sum_probs=35.3
Q ss_pred HHHHHHHHHhhhcCCc-ccHHHHHHHHhHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhhhhhhhh
Q 002148 635 VHIDRFAYIFRYVNHP-EAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGIT 699 (959)
Q Consensus 635 ~~l~~l~~~~~~~~~~-~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~~~~~~~~~~~~ 699 (959)
..++.+++++...+.- .|.+ .++.+.+..+=+.....+-++-++...+++.++++|....++
T Consensus 591 ~VL~~ls~lI~r~~e~I~P~~---~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~ 653 (978)
T KOG1993|consen 591 SVLNLLSTLIERVSEHIAPYA---STIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEF 653 (978)
T ss_pred HHHHHHHHHHHHHHHhhhHHH---HHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccc
Confidence 3567777776655421 2333 333333333333334455667778888888888888755443
No 116
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=46.04 E-value=89 Score=27.45 Aligned_cols=98 Identities=17% Similarity=0.140 Sum_probs=58.4
Q ss_pred HHHHHccCCCHHHHHHHHHHHHHHhcC----------hhhHHHHHHHhccCCCChhHHHHHHHHHHhhhhcCCCCCChhh
Q 002148 10 ALNALYHHPDDAVRMQADRWLQDFQHT----------IDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEA 79 (959)
Q Consensus 10 av~~l~~~~d~~~r~~A~~~L~~~q~s----------~~aw~~~~~lL~~~~~~~~~~~faa~~L~~ki~~~w~~l~~~~ 79 (959)
.+..+..++++..|..|-..|..+-.. .++++....++.+ .+..++..++.+|.+-..... ...
T Consensus 11 ~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--~~~~v~~~a~~~L~~l~~~~~----~~~ 84 (120)
T cd00020 11 ALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS--EDEEVVKAALWALRNLAAGPE----DNK 84 (120)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC--CCHHHHHHHHHHHHHHccCcH----HHH
Confidence 333344466777888888877776653 2566666777764 467899999999998866432 111
Q ss_pred HHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHH
Q 002148 80 VRGLQDSLNTLLKKFH-KGPPKVRTQISIAVAALA 113 (959)
Q Consensus 80 ~~~lr~~Ll~~l~~~~-~~~~~v~~kL~~~la~l~ 113 (959)
....+..++..+.+.- .+...++...+.+|..+.
T Consensus 85 ~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 85 LIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 1222222344444322 245567777777776553
No 117
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=45.62 E-value=6.5e+02 Score=30.77 Aligned_cols=136 Identities=13% Similarity=0.126 Sum_probs=69.2
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhhh---C--CHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCChHHHH-HH
Q 002148 529 TSEDTAAAAALAFRHICDDCRKKLC---G--YLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAK-KA 602 (959)
Q Consensus 529 ~~~~v~~~A~~al~~lc~~c~~~L~---~--~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~-~~ 602 (959)
+.+ +...||+|+.++|+-|..... - -++.|++.+..+- - .+..+..++|+=.|-..-|.+-.+ ..
T Consensus 225 n~D-IMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~Ie------y--iDvAEQ~LqALE~iSR~H~~AiL~AG~ 295 (1051)
T KOG0168|consen 225 NFD-IMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIE------Y--IDVAEQSLQALEKISRRHPKAILQAGA 295 (1051)
T ss_pred cHH-HHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhh------h--hHHHHHHHHHHHHHHhhccHHHHhccc
Confidence 345 999999999999998875332 2 3555555554431 1 223344455554444433322111 11
Q ss_pred HHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcccHHHHHHHH
Q 002148 603 LEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLC 682 (959)
Q Consensus 603 l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~ 682 (959)
+...++ .++-+... .++. +|...+.+.+.+...+ ..++.+..|++..+++. .|...+|.+|
T Consensus 296 l~a~Ls-ylDFFSi~------------aQR~--AlaiaaN~Cksi~sd~--f~~v~ealPlL~~lLs~--~D~k~ies~~ 356 (1051)
T KOG0168|consen 296 LSAVLS-YLDFFSIH------------AQRV--ALAIAANCCKSIRSDE--FHFVMEALPLLTPLLSY--QDKKPIESVC 356 (1051)
T ss_pred HHHHHH-HHHHHHHH------------HHHH--HHHHHHHHHhcCCCcc--chHHHHHHHHHHHHHhh--ccchhHHHHH
Confidence 111111 11000000 1111 2333333344333211 13445678888888765 3456789999
Q ss_pred HHHHHHHHHh
Q 002148 683 RACKYAVRTS 692 (959)
Q Consensus 683 ~~l~~~~~~~ 692 (959)
.++-+++..+
T Consensus 357 ic~~ri~d~f 366 (1051)
T KOG0168|consen 357 ICLTRIADGF 366 (1051)
T ss_pred HHHHHHHHhc
Confidence 9999888765
No 118
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=44.23 E-value=4.7e+02 Score=28.75 Aligned_cols=181 Identities=11% Similarity=0.068 Sum_probs=86.5
Q ss_pred HHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHh-hhhhhCCHHHHHHHH--HHHh
Q 002148 492 LQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDC-RKKLCGYLDGLYNVY--RTAV 567 (959)
Q Consensus 492 ~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~lc~~c-~~~L~~~~~~ll~~~--~~~~ 567 (959)
.+-+.++|++|. ++.|+ +-..++..=+....+.+ .+++.|-+-+-.||++- -....+.+.++++.. ..++
T Consensus 41 k~lasq~ip~~f---k~fp~---la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~d~l~qLLnk~sl~~Lf 114 (460)
T KOG2213|consen 41 KRLASQFIPRFF---KHFPS---LADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKGDALSRVNDVLVQLLNKASLTGLF 114 (460)
T ss_pred HHHHHHHHHHHH---hhCch---hhhHHHHhhhccccccchhhHHHHHhccchhccCchhhhhHHHHHHHHHHHHHHHHH
Confidence 444556677664 44455 55566665555555443 58999999999999871 111122222222211 0011
Q ss_pred hccCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhc
Q 002148 568 NGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYV 647 (959)
Q Consensus 568 ~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 647 (959)
... ...+...|++...-|..=+-.++.|-..+-++.. +++.+...+.... .......++.++. ++.+
T Consensus 115 ~~~--~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~---iv~eikkal~dVt-------geef~lfm~~L~~-lk~~ 181 (460)
T KOG2213|consen 115 GQI--EVGDEQIREKVLKFIRTKLITLKGEVLTKEVERH---IVDEIKKALEDVT-------GEEFTLFMDILAS-LKSL 181 (460)
T ss_pred hhh--hhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHH---HHHHHHHHHHhcc-------HHHHHHHHHHHHh-hhcc
Confidence 110 1124555666666665444455554444333332 2233333333211 1223344555554 3333
Q ss_pred CCcccHHHHHHHHhHHHHHHHHh--hc-ccHHHHHHHHHHHHHHHHHh
Q 002148 648 NHPEAVADAIQRLWPIFKAIFDI--RA-WDMRTMESLCRACKYAVRTS 692 (959)
Q Consensus 648 ~~~~~~~~~~~~~~~~l~~il~~--~~-~~~~i~e~~~~~l~~~~~~~ 692 (959)
++-.+ .+-++++....+..-.. |. .|.+.+++...|+..++.-+
T Consensus 182 ~~k~~-~a~lqeLa~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfF 228 (460)
T KOG2213|consen 182 QTKAG-EARLQELAEEQEGLADLDAFNVSDADYVDRFISCLLMAVPFF 228 (460)
T ss_pred cCCCC-HHHHHHHHHHHhhhhccCcccCCChHHHHHHHHHHHHhhhhh
Confidence 32111 11223333433333222 43 57789999888887766543
No 119
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=43.70 E-value=3.2e+02 Score=26.72 Aligned_cols=108 Identities=14% Similarity=0.140 Sum_probs=63.4
Q ss_pred CCCH-HHHHHHHHHHHHHHHHhhhhhh-------------CCHH----HHHHHHHHHhhccCCCCCCHhhHHHHHHHHHH
Q 002148 528 STSE-DTAAAAALAFRHICDDCRKKLC-------------GYLD----GLYNVYRTAVNGEGSLKVSAEDSLHLVEALSM 589 (959)
Q Consensus 528 ~~~~-~v~~~A~~al~~lc~~c~~~L~-------------~~~~----~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~ 589 (959)
.+|. +++..|+.++..+-+.++..|. |+.. .+.+....++..-.. .-.......++++++.
T Consensus 50 ~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~-E~~~~~l~q~lK~la~ 128 (182)
T PF13251_consen 50 KDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQA-EKSPPVLTQLLKCLAV 128 (182)
T ss_pred cCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHH
Confidence 3442 5999999999998887765443 2222 223333332221000 1234466789999999
Q ss_pred HHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhh
Q 002148 590 VITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRY 646 (959)
Q Consensus 590 vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 646 (959)
+++..|.+.... .++.+++..+...+...+. ......+.+++.++..
T Consensus 129 Lv~~tPY~rL~~---~ll~~~v~~v~~~l~~~d~-------~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 129 LVQATPYHRLPP---GLLTEVVTQVRPLLRHRDP-------NVRVAALSCLGALLSV 175 (182)
T ss_pred HHccCChhhcCH---hHHHHHHHHHHHHHhcCCC-------cHHHHHHHHHHHHHcC
Confidence 999999887763 4566666666666665321 1122345677766553
No 120
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=43.32 E-value=51 Score=34.85 Aligned_cols=96 Identities=16% Similarity=0.173 Sum_probs=62.7
Q ss_pred chhhHHHHHHHHhhcccCCc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHh
Q 002148 451 RPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTS 525 (959)
Q Consensus 451 ~~~Ea~l~~l~~l~e~~~~~-----~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~ 525 (959)
.-.|-+.|+++.++..-+.- ....+..++..+.+-..|-.+.+++.|+++.+++==...|+- ..+.++++.+.+
T Consensus 172 ~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w-~~isqalpiL~K 250 (526)
T COG5064 172 DVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDW-SNISQALPILAK 250 (526)
T ss_pred HHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCch-HHHHHHHHHHHH
Confidence 34688999999887544321 123456666666554448889999999999887622222221 346666666655
Q ss_pred cc--CCCHHHHHHHHHHHHHHHHHh
Q 002148 526 GM--STSEDTAAAAALAFRHICDDC 548 (959)
Q Consensus 526 ~l--~~~~~v~~~A~~al~~lc~~c 548 (959)
-+ .+++ +..-|+.|+..+.+..
T Consensus 251 Liys~D~e-vlvDA~WAiSYlsDg~ 274 (526)
T COG5064 251 LIYSRDPE-VLVDACWAISYLSDGP 274 (526)
T ss_pred HHhhcCHH-HHHHHHHHHHHhccCc
Confidence 44 3456 8899999999987643
No 121
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=42.12 E-value=1.9e+02 Score=27.56 Aligned_cols=85 Identities=20% Similarity=0.081 Sum_probs=49.7
Q ss_pred HHHHHHHHHHcccCCCCCCcccHHHHHHHHHHHhhHHHHH---HHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCCchh
Q 002148 846 ASITRILIASLTGALPSSRLETVTYALLALTRAYGVRSLE---WAKESVSLIPLTALAEVERSRFLQALSEAASGVDVNA 922 (959)
Q Consensus 846 ~~lv~~ll~~l~~~~~~~~~~~~a~il~~l~~~~~~~~~~---wl~~~l~~~p~~~~~~~~~~~f~~~l~~~~~~~~~~~ 922 (959)
..+++.++..+....+. ....+.++|..+.+++|..+.+ =+.+.+..++ .++.+....+++++.-.. +..++
T Consensus 54 ~~Ile~l~~rI~~~s~~-~~~~~idlL~~lv~~~p~~vle~~~~l~~~ld~l~--~lp~~~a~~ll~Al~PLi--~~s~~ 128 (158)
T PF14676_consen 54 SEILEQLLNRIVTKSSS-PSSQYIDLLSELVRKAPLTVLECSSKLKELLDYLS--FLPGDVAIGLLRALLPLI--KFSPS 128 (158)
T ss_dssp HHHHHHHHHHHHH--SS---HHHHHHHHHHHHH-HHHHS-S-HHHHGGGGGTT--TS-HHHHHHHHHHHHHHH--TT-HH
T ss_pred HHHHHHHHHHHHhcCcc-chhHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHH--hcCHH
Confidence 44555666666444333 2356899999999999965443 3444555565 468888899999987754 23345
Q ss_pred hhHHHHHHHHHHHhhh
Q 002148 923 AMAPVEELSDVCRRNR 938 (959)
Q Consensus 923 f~~~l~~F~~~~r~~~ 938 (959)
+|+ .+...+||.+
T Consensus 129 lrd---~lilvLRKam 141 (158)
T PF14676_consen 129 LRD---SLILVLRKAM 141 (158)
T ss_dssp HHH---HHHHHHHHHT
T ss_pred HHH---HHHHHHHHHH
Confidence 554 3445666654
No 122
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=39.10 E-value=3.8e+02 Score=26.22 Aligned_cols=81 Identities=11% Similarity=0.158 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCC-cccHHHHH
Q 002148 579 DSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNH-PEAVADAI 657 (959)
Q Consensus 579 ~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~ 657 (959)
-+....+|+--++..-..+...+.+.+++.|+-. .++..+ .......|++|..++.+... .+...+++
T Consensus 54 y~flA~~g~~dll~~~~~~kilPvlPqLI~plk~----AL~tr~-------~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyy 122 (183)
T PF10274_consen 54 YRFLARQGIKDLLERGGGEKILPVLPQLIIPLKR----ALNTRD-------PEVFCATLKALQQLVTSSDMVGEALVPYY 122 (183)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH----HHhCCC-------HHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 4556677777777764455666777777777654 343221 12234456677666443322 24567788
Q ss_pred HHHhHHHHHHHHh
Q 002148 658 QRLWPIFKAIFDI 670 (959)
Q Consensus 658 ~~~~~~l~~il~~ 670 (959)
.++.|++.....+
T Consensus 123 rqLLp~ln~f~~k 135 (183)
T PF10274_consen 123 RQLLPVLNLFKNK 135 (183)
T ss_pred HHHHHHHHHHHhc
Confidence 8888887754433
No 123
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=37.98 E-value=5.3e+02 Score=28.13 Aligned_cols=138 Identities=11% Similarity=0.068 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHH-hhhh-------hhhhHHHHHHHHHHHHhhcCCcchhHhHHHHHHHhCCCccchHHHHHHHHH-
Q 002148 676 RTMESLCRACKYAVRT-SKRF-------MGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEA- 746 (959)
Q Consensus 676 ~i~e~~~~~l~~~~~~-~~~~-------~~~~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~~~~~~~~~~~l~~~~~~- 746 (959)
+.+-.++.++..++|. .|.. +...-|.++..++.+|... ..++.+.. ++..+-+.+. ....++..
T Consensus 91 EsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~--dial~~g~-mlRec~k~e~---l~~~iL~~~ 164 (335)
T PF08569_consen 91 ESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENP--DIALNCGD-MLRECIKHES---LAKIILYSE 164 (335)
T ss_dssp HHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGST--TTHHHHHH-HHHHHTTSHH---HHHHHHTSG
T ss_pred cccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCc--cccchHHH-HHHHHHhhHH---HHHHHhCcH
Confidence 4455566666666653 2322 2222367777777777743 23444433 4444434322 22222221
Q ss_pred HHHHHHHhhcCcccCCCCCCcHHHHHHHHHHHHhhCCCcccC--cCChHHHHHHHHHhccCCCchhHHHHHHHHHHhhcC
Q 002148 747 LFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIP--SSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDL 824 (959)
Q Consensus 747 l~~~~~~~l~~~~~~~~~pDl~~~~f~l~~~~~~~~p~~~l~--s~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~li~~ 824 (959)
.+..-+..++ ..+=|+..+.|..+..++..++..+-. +..++.++..-..-+...+.-+-|-++++|.+++..
T Consensus 165 ~f~~ff~~~~-----~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellld 239 (335)
T PF08569_consen 165 CFWKFFKYVQ-----LPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLD 239 (335)
T ss_dssp GGGGHHHHTT-----SSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhc-----CCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHc
Confidence 1111111111 334578888888888888877654321 334667777656667778888899999999999954
No 124
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=36.26 E-value=8.5e+02 Score=29.39 Aligned_cols=119 Identities=12% Similarity=0.140 Sum_probs=68.4
Q ss_pred cHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHH-----HHHhccCCCHH-HHHHHHHHHHHHHHHhhhhhhCCHHHHHH
Q 002148 488 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLS-----ILTSGMSTSED-TAAAAALAFRHICDDCRKKLCGYLDGLYN 561 (959)
Q Consensus 488 ~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~-----~l~~~l~~~~~-v~~~A~~al~~lc~~c~~~L~~~~~~ll~ 561 (959)
+++-...+++++++...++.... -+..++. .+...++.+-. ++++||+.+.++-++-+.. ..+..+++
T Consensus 429 narq~egalr~lasi~s~itk~s----p~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~--~ill~aye 502 (970)
T COG5656 429 NARQAEGALRLLASIKSFITKMS----PAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDN--GILLEAYE 502 (970)
T ss_pred cHHHHhhHHHHHHHHHHHhccCc----hHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccc--hHHHHHHH
Confidence 56777788889988888665543 2333333 33445555532 8899999998885554431 11222333
Q ss_pred HHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhc
Q 002148 562 VYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQ 620 (959)
Q Consensus 562 ~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~ 620 (959)
...+.+.+. .+ ..+....-|+...+.. ++....+...+.+.++++-.+.+.
T Consensus 503 ~t~ncl~nn---~l--pv~ieAalAlq~fi~~---~q~h~k~sahVp~tmekLLsLSn~ 553 (970)
T COG5656 503 NTHNCLKNN---HL--PVMIEAALALQFFIFN---EQSHEKFSAHVPETMEKLLSLSNT 553 (970)
T ss_pred HHHHHHhcC---Cc--chhhhHHHHHHHHHhc---hhhhHHHHhhhhHHHHHHHHhccc
Confidence 333333321 12 2344444455555544 355577788888988887776543
No 125
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=36.20 E-value=9.9e+02 Score=30.17 Aligned_cols=246 Identities=14% Similarity=0.130 Sum_probs=116.5
Q ss_pred hHHHhhhccC-CC-CcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHhhh
Q 002148 475 MPQVMALLPK-LP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMS--TSEDTAAAAALAFRHICDDCRK 550 (959)
Q Consensus 475 l~~l~~~l~~-lp-~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~--~~~~v~~~A~~al~~lc~~c~~ 550 (959)
+..++..|.+ +. ..-.||-+++.-+|+.+.=+. + .+...++..++..+. ++...--.||.+|.+++.. .
T Consensus 339 vE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~---~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~r--G 411 (1133)
T KOG1943|consen 339 VEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--P---ELADQVIGSVIDLFNPAEDDSAWHGACLALAELALR--G 411 (1133)
T ss_pred HHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--H---HHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhc--C
Confidence 3344444443 43 256899999999999875433 2 255566655554332 2222566777777777652 2
Q ss_pred hhhC-CHHHHHHHHHHHhhcc---CCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCC---
Q 002148 551 KLCG-YLDGLYNVYRTAVNGE---GSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPE--- 623 (959)
Q Consensus 551 ~L~~-~~~~ll~~~~~~~~~~---~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~--- 623 (959)
-+.| -++.++..+...+... +....+...|....-.+-++..+-.+..++++++++.+-++.. .+.+...+
T Consensus 412 lLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~--AlFDrevncRR 489 (1133)
T KOG1943|consen 412 LLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIV--ALFDREVNCRR 489 (1133)
T ss_pred CcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHH--HhcCchhhHhH
Confidence 2333 2334444433333211 1112334445444444445555555555566666555544321 11111000
Q ss_pred ----------c--ccccCchhhhHHHHHHHHHhhhcC---CcccHHHHHHHHhHHHHHHHHh--hcccHHHHHHHHHHHH
Q 002148 624 ----------I--LQKKHPRDLTVHIDRFAYIFRYVN---HPEAVADAIQRLWPIFKAIFDI--RAWDMRTMESLCRACK 686 (959)
Q Consensus 624 ----------~--~~~~~~~~~~~~l~~l~~~~~~~~---~~~~~~~~~~~~~~~l~~il~~--~~~~~~i~e~~~~~l~ 686 (959)
+ ++...--.+...++..+..-+... -+-+++.+-.=.-|++..++++ ..+|+.+.|..-.+++
T Consensus 490 AAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~ 569 (1133)
T KOG1943|consen 490 AASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALH 569 (1133)
T ss_pred HHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHH
Confidence 0 000000001111111111111000 0111222222244666666655 4578889999999988
Q ss_pred HHHHHhhhhhh-hhHHHHHHHHHHHHhhcCCcchhHhHHHHHHH
Q 002148 687 YAVRTSKRFMG-ITIGAILEEIQGLYQQHQQPCFLYLSSEVIKI 729 (959)
Q Consensus 687 ~~~~~~~~~~~-~~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~ 729 (959)
+......+++. ..+|++++.....=-..++++++...+.+...
T Consensus 570 ~Ls~~~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~ 613 (1133)
T KOG1943|consen 570 KLSLTEPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGAL 613 (1133)
T ss_pred HHHHhhHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHh
Confidence 85554444544 66788877554332234566666655544433
No 126
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=35.62 E-value=3.1e+02 Score=24.11 Aligned_cols=70 Identities=9% Similarity=0.099 Sum_probs=44.8
Q ss_pred HHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhhh-hhhhhHHHHHHHHHHH
Q 002148 635 VHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKR-FMGITIGAILEEIQGL 710 (959)
Q Consensus 635 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~~~~~~~-~~~~~l~~l~~~l~~~ 710 (959)
..+..|+.+++ +.+ ..+..+.-|++..+...+ ..+++.+.+++++...++.+++ .+.|++++++-.+...
T Consensus 34 ~~l~si~~lI~-~~~-~~i~~~~pQI~a~L~sal----~~~~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l~~~ 104 (107)
T PF08064_consen 34 RALRSIEELIK-LGG-SHISSARPQIMACLQSAL----EIPELREEALSCWNCFIKTLDEEDLGPLLDQIFAILLPL 104 (107)
T ss_pred HHHHHHHHHHH-HhH-HHHHHHHHHHHHHHHHHh----CChhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHh
Confidence 45677777777 322 223334445555555544 3357889999999999998754 6667777777665543
No 127
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=35.45 E-value=4e+02 Score=25.41 Aligned_cols=35 Identities=14% Similarity=0.180 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCCh
Q 002148 557 DGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQ 596 (959)
Q Consensus 557 ~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~ 596 (959)
+.+++.+.+++.+. -+.+.|.++++.+| ++.++.+
T Consensus 9 P~LL~~L~~iLk~e----~s~~iR~E~lr~lG-ilGALDP 43 (160)
T PF11865_consen 9 PELLDILLNILKTE----QSQSIRREALRVLG-ILGALDP 43 (160)
T ss_pred HHHHHHHHHHHHhC----CCHHHHHHHHHHhh-hccccCc
Confidence 67888888888763 35778999999999 4555544
No 128
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=35.15 E-value=4.9e+02 Score=26.37 Aligned_cols=71 Identities=17% Similarity=0.109 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHH-------------------hhhhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcC
Q 002148 534 AAAAALAFRHICDD-------------------CRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITEL 594 (959)
Q Consensus 534 ~~~A~~al~~lc~~-------------------c~~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~ 594 (959)
...-++.+..+|+. .++.+..|++.++-.+....... .++.+.+..+..|+-.|+...
T Consensus 112 a~~~aRlL~~l~ep~~~~~~~~~~~~l~~~~~~~k~~~~kh~~~lL~~Yi~~~~~~---~l~~~vr~~L~pGiy~l~d~~ 188 (223)
T PF10441_consen 112 AKAFARLLTNLCEPSSVSRSSKKTSSLTSATSSAKKSLRKHAPYLLANYISLQLKY---TLPPEVREALMPGIYALFDVC 188 (223)
T ss_pred HHHHHHHHHHHhCcccccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHhC
Confidence 45556667777755 23456678888877776665442 489999999999999999998
Q ss_pred ChHHHHHHHHHhhh
Q 002148 595 PQVDAKKALEMLCL 608 (959)
Q Consensus 595 p~~~~~~~l~~ll~ 608 (959)
+.++ .+.+...++
T Consensus 189 s~~e-~~~l~a~Ld 201 (223)
T PF10441_consen 189 SQHE-LQQLNASLD 201 (223)
T ss_pred CHHH-HHHHHHHcC
Confidence 8766 344444333
No 129
>PF09184 PPP4R2: PPP4R2; InterPro: IPR015267 PPP4R2 (protein phosphatase 4 core regulatory subunit R2) is the regulatory subunit of the histone H2A phosphatase complex. It has been shown to confer resistance to the anticancer drug cisplatin in yeast [], and may confer resistance in higher eukaryotes.
Probab=35.14 E-value=3e+02 Score=29.28 Aligned_cols=105 Identities=12% Similarity=0.216 Sum_probs=65.8
Q ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCh---hhHHHHHHHhccCCCChhHHHHHHHHHHhhhhcCCCCCChhhHH
Q 002148 5 NTVKEALNALYHHPDDAVRMQADRWLQDFQHTI---DAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVR 81 (959)
Q Consensus 5 ~~v~~av~~l~~~~d~~~r~~A~~~L~~~q~s~---~aw~~~~~lL~~~~~~~~~~~faa~~L~~ki~~~w~~l~~~~~~ 81 (959)
+.|.++++.+..-...+.......+|...-++. ..|.....++..--...--.||- ..-...+. .........+.
T Consensus 3 ~~~~~~l~~f~~~k~~~l~~~L~~il~~ia~tg~~~~~W~~lk~l~~~kl~~v~~e~~~-~~p~~~~~-~~~~~~~~~~~ 80 (288)
T PF09184_consen 3 EELLDALENFMKIKSKELPPELEDILEHIAKTGETWYPWSLLKSLFRHKLEKVIDEFFE-SAPEESGP-QNPNVEPEDYE 80 (288)
T ss_pred HHHHHHHHHhcCCCcccHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHHHHHh-cCccccCC-CCCCcchhhHH
Confidence 557788888876555567778888888877763 46877777775411111112220 00001111 12234445678
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 002148 82 GLQDSLNTLLKKFHKGPPKVRTQISIAVAAL 112 (959)
Q Consensus 82 ~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l 112 (959)
.++..+..++..|.. +++...|||..|..=
T Consensus 81 ~~~~~~~~~~~~f~~-~PfTiqRlcEl~~~P 110 (288)
T PF09184_consen 81 EMKERILELLDSFDE-PPFTIQRLCELLLDP 110 (288)
T ss_pred HHHHHHHHHHHhcCC-CChhHHHHHHHHhCh
Confidence 899999999999865 889999999887543
No 130
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=34.45 E-value=1.2e+03 Score=30.75 Aligned_cols=165 Identities=11% Similarity=0.065 Sum_probs=102.3
Q ss_pred CCcHHHHHHHHHHHHhhCCCcccCcCChHHHHHHHHHhccCCCchhHHHHHHHHHHhhcCcCCCCchhhHHHHHHHHhhc
Q 002148 765 PDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPR 844 (959)
Q Consensus 765 pDl~~~~f~l~~~~~~~~p~~~l~s~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~ 844 (959)
|++-+.+-.++.+..... .-+++..+..++++.+.++...+++......+=+.+++....+.....-..++.+++.++
T Consensus 839 ~~l~~~~~~~~~~~~s~~--t~FPakql~~il~~~~~~~~~~~~~~~~~~~~pl~~l~~~y~~g~~~H~~~v~~~Lle~Y 916 (2196)
T KOG0368|consen 839 PNLDKSLESLVAKSASRI--TQFPAKQLAKILDAHLATLNRAEREVLFVNIQPLLKLVSRYSGGLEAHAKEVVHDLLEEY 916 (2196)
T ss_pred hhHHHHHHHHHHHHhhhc--ccCcHHHHHHHHHHHhhccccccchhhhhhhhHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 556666656666666543 255666789999999988888899988888888888886533322222223344444332
Q ss_pred cHHHHHHHHHHcccCCCCCCcccHHHHHHHHHHHhhHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcC---CCch
Q 002148 845 GASITRILIASLTGALPSSRLETVTYALLALTRAYGVRSLEWAKESVSLIPLTALAEVERSRFLQALSEAASG---VDVN 921 (959)
Q Consensus 845 g~~lv~~ll~~l~~~~~~~~~~~~a~il~~l~~~~~~~~~~wl~~~l~~~p~~~~~~~~~~~f~~~l~~~~~~---~~~~ 921 (959)
.. |.++|.+. .+ ...+++..+-..+...+.+-+..+++ +..-..|+.++..++...+. +...
T Consensus 917 l~--VEk~F~~~-----~~---~~e~~i~~lr~~~~~d~~kVv~~i~S-----Hs~i~~KN~Lv~~ll~~l~~~s~~~~~ 981 (2196)
T KOG0368|consen 917 LE--VEKLFNGR-----DS---HYEDVILRLREENKKDLKKVVDIILS-----HSQIKSKNKLVLALLDQLKPPSSKVSD 981 (2196)
T ss_pred HH--HHHHhccC-----cc---hHHHHHHHHHHhhhhHHHHHHHHHHc-----chhhhhhhHHHHHHHHHhcCCCCCCCH
Confidence 21 44555432 22 35577777777777666666655542 22334467788887776544 5567
Q ss_pred hhhHHHHHHHHHHHh------hhhHHHHHHh
Q 002148 922 AAMAPVEELSDVCRR------NRTVQEIVQG 946 (959)
Q Consensus 922 ~f~~~l~~F~~~~r~------~~~~~~~~~~ 946 (959)
.|+..+.++...-.. .++...++++
T Consensus 982 ~f~~iL~~l~~L~~~~~~eVal~Ar~iLi~~ 1012 (2196)
T KOG0368|consen 982 EFRDILRKLTELNHTNTSEVALKARQILIQS 1012 (2196)
T ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHHhC
Confidence 888888888875444 2335556665
No 131
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.88 E-value=9.2e+02 Score=29.13 Aligned_cols=69 Identities=10% Similarity=0.098 Sum_probs=56.0
Q ss_pred cHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccCCCHH-HHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHH
Q 002148 488 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSED-TAAAAALAFRHICDDCRKKLCGYLDGLYNVYRT 565 (959)
Q Consensus 488 ~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~~-v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~ 565 (959)
+..+|..+++.+.+.- .|+ ++.++++.+..++.|++. |++-|..|+..|-+. ..+|.|..+.++..+..
T Consensus 112 NEyiRG~TLRFLckLk-----E~E---Llepl~p~IracleHrhsYVRrNAilaifsIyk~-~~~L~pDapeLi~~fL~ 181 (948)
T KOG1058|consen 112 NEYIRGSTLRFLCKLK-----EPE---LLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN-FEHLIPDAPELIESFLL 181 (948)
T ss_pred hHhhcchhhhhhhhcC-----cHH---HhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh-hhhhcCChHHHHHHHHH
Confidence 4589999999998863 465 899999999999988754 888888888888776 67899999998876644
No 132
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=33.28 E-value=8.3e+02 Score=28.40 Aligned_cols=60 Identities=18% Similarity=0.236 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHh-cChhhHHHH----HHHhccCCCChhHHHHHHHHHH
Q 002148 4 QNTVKEALNALYHHPDDAVRMQADRWLQDFQ-HTIDAWQVA----DNLLHDATSNLETLIFCSQTLR 65 (959)
Q Consensus 4 ~~~v~~av~~l~~~~d~~~r~~A~~~L~~~q-~s~~aw~~~----~~lL~~~~~~~~~~~faa~~L~ 65 (959)
.++..++++.+..++....|=.|-..|+++- +.|+-...| ..|+.+ .+-.+-.||-.+|-
T Consensus 301 ~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd--~Nr~IstyAITtLL 365 (898)
T COG5240 301 VDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISD--ENRTISTYAITTLL 365 (898)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhc--ccccchHHHHHHHH
Confidence 4556677777777777777888888887754 677777666 334433 33346667766664
No 133
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=31.34 E-value=9.5e+02 Score=34.77 Aligned_cols=169 Identities=10% Similarity=0.065 Sum_probs=92.7
Q ss_pred hhhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCccccc
Q 002148 549 RKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKK 628 (959)
Q Consensus 549 ~~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~ 628 (959)
...+.||++.|+.....+.... -.+.+-.+++.++-.-+.....+....-+-.++.++++.++.........
T Consensus 624 ervl~phv~~Ii~~smela~~a----~eplnYf~LLraLFRsigGg~~d~ly~e~lplL~~lLe~ln~l~~~~~s~---- 695 (3550)
T KOG0889|consen 624 ERVLRPHVHDIISTSMELATTA----PEPLNYFQLLRALFRSIGGGAFDSLYREVLPLLPNLLEILNHLLSSFHSQ---- 695 (3550)
T ss_pred hhhcccchhHHHHHHHHHHhcC----CcchhHHHHHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHhhccCcc----
Confidence 3567799999998766655431 12455667777777777776666666666667788888888777655432
Q ss_pred CchhhhHHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh-hhhhhhhHHHHHHHH
Q 002148 629 HPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTS-KRFMGITIGAILEEI 707 (959)
Q Consensus 629 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~~~~~-~~~~~~~l~~l~~~l 707 (959)
..+++-..+ |++.=+|- ..+.+++.-+| ..+.....+.++++-...+.+..++..+ .+++.|.+.++.+-+
T Consensus 696 ~mkdLfvEL-clTvPvRL----S~Llpylp~LM---~PLv~aLkgs~~lvsQgLRtlelcvDnltPefL~~~mepv~~~l 767 (3550)
T KOG0889|consen 696 GMKDLFVEL-CLTLPVRL----SSLLPYLPLLM---KPLVFALKGSPELVSQGLRTLELCVDNLTPEFLDPIMEPVRDDL 767 (3550)
T ss_pred chHHHHHHH-HHhhhHHH----HHhhhhhhhhh---hHHHHHhcCCHHHHHHHHhHHHHHHhcCChHhhhHHHHHHHHHH
Confidence 233332111 12211110 01112222222 1222223556777777777777777654 334445444444433
Q ss_pred H----HHHhhcCCcchhHhHHHHHHHhCCC
Q 002148 708 Q----GLYQQHQQPCFLYLSSEVIKIFGSD 733 (959)
Q Consensus 708 ~----~~~~~~~~~~~L~l~~~li~~~~~~ 733 (959)
+ ...+..+..++-..+-.+.+++|+.
T Consensus 768 mqaLw~~l~~~~~~s~s~~a~rILGKlgG~ 797 (3550)
T KOG0889|consen 768 MQALWSHLRPVPNYSYSHRALRILGKLGGR 797 (3550)
T ss_pred HHHHHHhccCCCCchHHHHHHHHHHhhcCc
Confidence 3 3343333445666677778888864
No 134
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.89 E-value=7.3e+02 Score=27.02 Aligned_cols=45 Identities=22% Similarity=0.249 Sum_probs=30.8
Q ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHhcC---------hhhHHHHHHHhccC
Q 002148 6 TVKEALNALYHHPDDAVRMQADRWLQDFQHT---------IDAWQVADNLLHDA 50 (959)
Q Consensus 6 ~v~~av~~l~~~~d~~~r~~A~~~L~~~q~s---------~~aw~~~~~lL~~~ 50 (959)
++..++..||.++++..|-+|-.-|..+-.. ..+......||++|
T Consensus 251 ~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~ 304 (550)
T KOG4224|consen 251 KLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSP 304 (550)
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCc
Confidence 3677888899888888888888877765432 23344556666653
No 135
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=30.73 E-value=5.4e+02 Score=27.95 Aligned_cols=95 Identities=18% Similarity=0.182 Sum_probs=65.5
Q ss_pred CCCHHHHHHHHHHHHHHhc---------ChhhHHHHHHHhccCCCChhHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHH
Q 002148 17 HPDDAVRMQADRWLQDFQH---------TIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSL 87 (959)
Q Consensus 17 ~~d~~~r~~A~~~L~~~q~---------s~~aw~~~~~lL~~~~~~~~~~~faa~~L~~ki~~~w~~l~~~~~~~lr~~L 87 (959)
..+.+.|..|-+-|+.+-. +-++|......+. +.+.++|-.||.++-..++++ |.-+-..+...-
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~--~~~~~lR~~Aa~Vigt~~qNN----P~~Qe~v~E~~~ 167 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLE--NSDAELRELAARVIGTAVQNN----PKSQEQVIELGA 167 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhc--CCcHHHHHHHHHHHHHHHhcC----HHHHHHHHHccc
Confidence 3578889888888877664 4566777777665 467789999999999999875 333333333333
Q ss_pred HHHHHH-h-cCCChHHHHHHHHHHHHHHhhcc
Q 002148 88 NTLLKK-F-HKGPPKVRTQISIAVAALAVHIS 117 (959)
Q Consensus 88 l~~l~~-~-~~~~~~v~~kL~~~la~l~~~~~ 117 (959)
+..|.. + .++|..+|+|.--+++.+..+..
T Consensus 168 L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~ 199 (342)
T KOG2160|consen 168 LSKLLKILSSDDPNTVRTKALFAISSLIRNNK 199 (342)
T ss_pred HHHHHHHHccCCCchHHHHHHHHHHHHHhcCc
Confidence 333322 2 25677899999999998887644
No 136
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=30.49 E-value=5.5e+02 Score=25.52 Aligned_cols=56 Identities=9% Similarity=0.078 Sum_probs=36.8
Q ss_pred HHHHHHHhhhhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCChHHHHH
Q 002148 541 FRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKK 601 (959)
Q Consensus 541 l~~lc~~c~~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~ 601 (959)
+..+.+.++..-.|++..++..+.++...+ +.+-+..+=+++|..+.+++++....
T Consensus 24 ~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~-----~f~~~~~~e~~lgaAi~amGpe~vL~ 79 (198)
T PF08161_consen 24 LSALFEKLGERSSPLLKPILKTLGDLRESE-----DFSFRKELEQVLGAAIRAMGPEQVLS 79 (198)
T ss_pred HHHHHHHHhhhccHHHHHHHHHHHHHHcCC-----CcchHHHHHHHHHHHHHHCCHHHHHH
Confidence 333444455555566777777777765532 24567788889999999988877543
No 137
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.10 E-value=1.4e+02 Score=32.19 Aligned_cols=125 Identities=16% Similarity=0.160 Sum_probs=66.0
Q ss_pred hHHHhhhccCCCCcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhhh
Q 002148 475 MPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLC 553 (959)
Q Consensus 475 l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~lc~~c~~~L~ 553 (959)
+|-+++.++. .++.+++-++..||..+---....-..+--|.+++.+..-++++. +++-.|+.|++.+..+.+-+..
T Consensus 210 lpvLVsll~s--~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~e 287 (550)
T KOG4224|consen 210 LPVLVSLLKS--GDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQRE 287 (550)
T ss_pred chhhhhhhcc--CChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhH
Confidence 4555544443 267778777777776653111110000112445566666666653 5999999999999987653322
Q ss_pred ----CCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHH--HhcCChHHHHHHHHHhhhhhHHH
Q 002148 554 ----GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMV--ITELPQVDAKKALEMLCLPVVTP 613 (959)
Q Consensus 554 ----~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~v--i~~~p~~~~~~~l~~ll~p~~~~ 613 (959)
.-+|.++..++.- +. -.+.++++.| ++--|-.+..-.=..++.|++.-
T Consensus 288 iv~ag~lP~lv~Llqs~--------~~----plilasVaCIrnisihplNe~lI~dagfl~pLVrl 341 (550)
T KOG4224|consen 288 IVEAGSLPLLVELLQSP--------MG----PLILASVACIRNISIHPLNEVLIADAGFLRPLVRL 341 (550)
T ss_pred HHhcCCchHHHHHHhCc--------ch----hHHHHHHHHHhhcccccCcccceecccchhHHHHH
Confidence 4455555554321 11 2455666666 55444322221223466666643
No 138
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=29.59 E-value=76 Score=25.70 Aligned_cols=52 Identities=19% Similarity=0.259 Sum_probs=33.6
Q ss_pred hhhHHHHHHHHhhcccCC----ccccchHHHhhhccCCCCcHHHHHHHHHHHHhhhh
Q 002148 452 PAEAALFCIRAISTYVSV----VEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSK 504 (959)
Q Consensus 452 ~~Ea~l~~l~~l~e~~~~----~~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~ 504 (959)
++-++||+++.++..-.. ++.+.++.++++..+-| ...+|.|+++++|-.+.
T Consensus 3 ~lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~-v~siRGT~fy~Lglis~ 58 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSP-VLSIRGTCFYVLGLISS 58 (73)
T ss_pred HHHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCC-ccchHHHHHHHHHHHhC
Confidence 467899999999764221 12244455554443333 56799999999997653
No 139
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=28.87 E-value=7e+02 Score=29.74 Aligned_cols=240 Identities=12% Similarity=0.096 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHH-HHHHHhcCCCcccccCchhhh
Q 002148 556 LDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTP-LQEIINQGPEILQKKHPRDLT 634 (959)
Q Consensus 556 ~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~-l~~~~~~~~~~~~~~~~~~~~ 634 (959)
++.+++++.+-.+ ..+...|-.+..|.+.+++.+|-......++ ++.-..+. .-+.+++.... .....+
T Consensus 244 l~~iV~f~~~s~S-----s~~~~~rf~~a~~~aki~srl~w~l~~sfi~-ii~~~~en~~~s~l~~~cdi---i~tnel- 313 (993)
T COG5234 244 LEVIVDFLLSSVS-----SIDSFVRFSAAKGLAKIISRLPWNLAESFID-IIELMTENMFLSPLENTCDI---IITNEL- 313 (993)
T ss_pred HHHHHHHHHcCcc-----cccHHHHHHHHhhHHHHHhhcccccHHHHHH-HHHhcccccchhhhhCccce---eecchH-
Confidence 4555555544433 2467889999999999999988544433332 22221111 11222222110 011223
Q ss_pred HHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHH---hhcc---cHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Q 002148 635 VHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFD---IRAW---DMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQ 708 (959)
Q Consensus 635 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~---~~~~---~~~i~e~~~~~l~~~~~~~~~~~~~~l~~l~~~l~ 708 (959)
.++..|.-+.-..-.+=.....+ +.|++..-+. .+.. -..|+|..|-++....|+....+.+-+.+.+-.++
T Consensus 314 ~w~~~i~~~ala~~~~id~~d~~--i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~lqt~L~hll 391 (993)
T COG5234 314 VWHGAILFFALAGAGLIDYSDCL--ILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHLL 391 (993)
T ss_pred HHHHHHHHHHHhhccccchhhhh--hhhheccccceeehheeeeccceeecccceeeeeeeeccccccchhHHHHHHHHH
Confidence 34445444331111121111111 3444444331 1111 12467888888777777755555454555544332
Q ss_pred -H-HHhhcCCcchhHhHHHHHHHhCCCccchHHHHHHHHHHHHHHHHhhcCcccCCCCCCcHHHHHHHHHHHHhhCCCcc
Q 002148 709 -G-LYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLF 786 (959)
Q Consensus 709 -~-~~~~~~~~~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pDl~~~~f~l~~~~~~~~p~~~ 786 (959)
+ .+-.++..+=-.....+.+..|......... + -..+++ ..+-|+ ..+..+.+.+.+.+.|...
T Consensus 392 ~~~alFDpel~vRr~a~Aal~E~iGR~~s~a~g~-~--------lIslIN----~~sv~r-~s~csg~~~r~~~~~~k~~ 457 (993)
T COG5234 392 LQTALFDPELNVRRAATAALFEVIGRHASIADGL-S--------LISLIN----YVSVTR-ISNCSGDLCRKVAHFPKFR 457 (993)
T ss_pred HhhhhcCchhhhhhHHHHHHHHHhccCCCcccch-h--------hhhhcc----ceecch-hhhcchHHHHHhcCccccc
Confidence 2 3333333333334455566666632211110 0 111111 233455 5556667777777667432
Q ss_pred cCcCChHHHHHHHHHhccCCCchhHHHHHHHHHHhhcC
Q 002148 787 IPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDL 824 (959)
Q Consensus 787 l~s~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~li~~ 824 (959)
.-.++|+. +.+..+.+-++++.--.--.+..++..
T Consensus 458 ~CedVF~d---iLl~Nl~H~~~~~k~~~~y~l~~liK~ 492 (993)
T COG5234 458 SCEDVFQD---ILLTNLQHWDVKVKQLSAYSLRQLIKY 492 (993)
T ss_pred hHHHHHHH---HHHhhhhccchhhhhhccccHHHHhcC
Confidence 22222222 234444444444333333345555543
No 140
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=28.73 E-value=7.2e+02 Score=26.28 Aligned_cols=151 Identities=12% Similarity=0.142 Sum_probs=0.0
Q ss_pred hCCCChhhHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhh---h---CCHHHHHHHHHHHhhccCCCCCCH---
Q 002148 508 AASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKL---C---GYLDGLYNVYRTAVNGEGSLKVSA--- 577 (959)
Q Consensus 508 ~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~lc~~c~~~L---~---~~~~~ll~~~~~~~~~~~~~~l~~--- 577 (959)
.+|...++++-+++.++.-+++.. +++..++.++..|.+.+.... . +..+.+.+.+.+.+.. +++
T Consensus 109 ~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~-----LP~~tp 183 (282)
T PF10521_consen 109 DRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYY-----LPPITP 183 (282)
T ss_pred CcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhc-----CCCCCC
Q ss_pred -hhHHHH----HHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccC---chhhhHHHHHHHHHhhhcCC
Q 002148 578 -EDSLHL----VEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKH---PRDLTVHIDRFAYIFRYVNH 649 (959)
Q Consensus 578 -~~~~~l----~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~---~~~~~~~l~~l~~~~~~~~~ 649 (959)
++...+ |.++-.++.....+........+..-+-+.+-+.+.-.. . .+-....++.+..+++.++.
T Consensus 184 ~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~------~~~~~~l~~~ll~~l~~~i~~lGi 257 (282)
T PF10521_consen 184 EDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHES------SFSYPRLRTVLLQQLPPIIDELGI 257 (282)
T ss_pred chhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceecc------ccCchhHHHHHHHHHHHHHHHhcc
Q ss_pred cccHHHHHHHHhHHHHHHHHhh
Q 002148 650 PEAVADAIQRLWPIFKAIFDIR 671 (959)
Q Consensus 650 ~~~~~~~~~~~~~~l~~il~~~ 671 (959)
. ++..++.+.|++.++++..
T Consensus 258 ~--~~~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 258 S--SVKHLQRIIPVLSQILENP 277 (282)
T ss_pred H--HHHHHHHHHHHHHHHhcCC
No 141
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.06 E-value=1.3e+03 Score=28.55 Aligned_cols=121 Identities=8% Similarity=0.116 Sum_probs=69.4
Q ss_pred HhhcccCCccccchHHHhhhccCCCCc------HHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccCCCHH-HH
Q 002148 462 AISTYVSVVEAEVMPQVMALLPKLPQQ------PQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSED-TA 534 (959)
Q Consensus 462 ~l~e~~~~~~~~~l~~l~~~l~~lp~~------~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~~-v~ 534 (959)
+++|.- .++.+|.+.+.-.+...+ -+|..+.+.++-+..+.+.. +...+++.+++|+++|+. .+
T Consensus 794 ~Lcevy---~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~------y~~~Li~tfl~gvrepd~~~R 864 (982)
T KOG4653|consen 794 SLCEVY---PEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFK------YKAVLINTFLSGVREPDHEFR 864 (982)
T ss_pred HHHHhc---chhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHH------HHHHHHHHHHHhcCCchHHHH
Confidence 445442 345777777744322111 24555555555444444443 567888888999999862 57
Q ss_pred HHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCC
Q 002148 535 AAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELP 595 (959)
Q Consensus 535 ~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p 595 (959)
..+...|..+|+..+-.+..++-.....+.++.... -+.-.|...+.-+.....+..
T Consensus 865 aSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d----~s~~vRRaAv~li~~lL~~tg 921 (982)
T KOG4653|consen 865 ASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTD----GSVLVRRAAVHLLAELLNGTG 921 (982)
T ss_pred HhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccC----CchhhHHHHHHHHHHHHhccc
Confidence 777778899998776555555544444444444321 234455555555555555543
No 142
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.54 E-value=5.9e+02 Score=30.79 Aligned_cols=134 Identities=10% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHhhhccC--hHHHHHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHhhcccCCc--cccchHHH
Q 002148 403 KEFKHTRYAVADVLIDAASVLG--GDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV--EAEVMPQV 478 (959)
Q Consensus 403 ~~f~~~R~~~~d~l~~~~~il~--~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~l~e~~~~~--~~~~l~~l 478 (959)
+.+-+|.+++-|++.++..-.. .+.-+.+++..+.. .+..+-+.+.+.-++...+.. .+.++..+
T Consensus 403 eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIED-----------ce~~~i~~rILhlLG~EgP~a~~Pskyir~i 471 (865)
T KOG1078|consen 403 EGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIED-----------CEFTQIAVRILHLLGKEGPKAPNPSKYIRFI 471 (865)
T ss_pred ccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHh-----------ccchHHHHHHHHHHhccCCCCCCcchhhHHH
Q ss_pred hhhccCCCCcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhhhCC
Q 002148 479 MALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGY 555 (959)
Q Consensus 479 ~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~lc~~c~~~L~~~ 555 (959)
.+.+-- ++..+|.++..++.++. +..+. ..+++...+.+++.+++ .++.+|..++..+-+.-.....++
T Consensus 472 yNRviL--En~ivRaaAv~alaKfg---~~~~~---l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~~~~l~~~~ 541 (865)
T KOG1078|consen 472 YNRVIL--ENAIVRAAAVSALAKFG---AQDVV---LLPSILVLLKRCLNDSDDEVRDRATFYLKNLEEKDDVLNQNY 541 (865)
T ss_pred hhhhhh--hhhhhHHHHHHHHHHHh---cCCCC---ccccHHHHHHHHhcCchHHHHHHHHHHHHHhhhhhhhhcccc
No 143
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.39 E-value=1.2e+03 Score=28.28 Aligned_cols=270 Identities=9% Similarity=0.040 Sum_probs=126.7
Q ss_pred cHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHh
Q 002148 488 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAV 567 (959)
Q Consensus 488 ~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~~ 567 (959)
+|.|..+++.+.-..+.-.+ ...+...+++-|+.+..++...-..+..+|..-+..+.||+..|+-.
T Consensus 300 n~sVVmA~aql~y~lAP~~~--------~~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~----- 366 (968)
T KOG1060|consen 300 NPSVVMAVAQLFYHLAPKNQ--------VTKIAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVR----- 366 (968)
T ss_pred CcHHHHHHHhHHHhhCCHHH--------HHHHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEee-----
Confidence 56666666666544443221 22334444454554433777777777777877777777887766521
Q ss_pred hccCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhc
Q 002148 568 NGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYV 647 (959)
Q Consensus 568 ~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 647 (959)
+ .=+......=++=+..++..-. +..++..++..+.... .+-...++..||.+....
T Consensus 367 --s---sDp~~vk~lKleiLs~La~esn-----------i~~ILrE~q~YI~s~d-------~~faa~aV~AiGrCA~~~ 423 (968)
T KOG1060|consen 367 --S---SDPTQVKILKLEILSNLANESN-----------ISEILRELQTYIKSSD-------RSFAAAAVKAIGRCASRI 423 (968)
T ss_pred --c---CCHHHHHHHHHHHHHHHhhhcc-----------HHHHHHHHHHHHhcCc-------hhHHHHHHHHHHHHHHhh
Confidence 1 0011222223334444443322 2223333344443221 112233455566555443
Q ss_pred CCcccHHHHHHHHhHHHHHHHHhhcccHHHHHHHHHHHHHHHHH-hhhhhhhhHHHHHHHHHHHHhhcCCcchhHhHHHH
Q 002148 648 NHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRT-SKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEV 726 (959)
Q Consensus 648 ~~~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~~~~-~~~~~~~~l~~l~~~l~~~~~~~~~~~~L~l~~~l 726 (959)
.. +-..++.-+..++... +.-|+.....++++++.. ...+ ..++-.+...+-..-...--++.+|+++..
T Consensus 424 ~s------v~~tCL~gLv~Llssh--de~Vv~eaV~vIk~Llq~~p~~h-~~ii~~La~lldti~vp~ARA~IiWLige~ 494 (968)
T KOG1060|consen 424 GS------VTDTCLNGLVQLLSSH--DELVVAEAVVVIKRLLQKDPAEH-LEILFQLARLLDTILVPAARAGIIWLIGEY 494 (968)
T ss_pred Cc------hhhHHHHHHHHHHhcc--cchhHHHHHHHHHHHHhhChHHH-HHHHHHHHHHhhhhhhhhhhceeeeeehhh
Confidence 32 1124444444455443 445566666667776654 2222 122222222221111111225677877655
Q ss_pred HHHhCCCccchHHHHHHHHHHHHHHHHhhcCcccCCCCCCcHHHHHHHHHHHHhhCCCcccCcCChHHHHHHHHHhccCC
Q 002148 727 IKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQ 806 (959)
Q Consensus 727 i~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pDl~~~~f~l~~~~~~~~p~~~l~s~~l~~~~~~~~~~l~~~ 806 (959)
+.. +..+...++.....-+ .++.+++.-..+++..++.-..+. .+..+.+++..-...+
T Consensus 495 ~e~----------vpri~PDVLR~laksF-----s~E~~evKlQILnL~aKLyl~~~~------~~kll~~Yv~~L~~yD 553 (968)
T KOG1060|consen 495 CEI----------VPRIAPDVLRKLAKSF-----SDEGDEVKLQILNLSAKLYLTNID------QTKLLVQYVFELARYD 553 (968)
T ss_pred hhh----------cchhchHHHHHHHHhh-----ccccchhhHHHHHhhhhheEechh------hHHHHHHHHHHHhccC
Confidence 543 1112222222222222 245566666666666665543332 2455555554333444
Q ss_pred CchhHHHHHHHHHHhhc
Q 002148 807 HREASNSILTFLSDIFD 823 (959)
Q Consensus 807 ~~~~~~~~~~fl~~li~ 823 (959)
-....|.-..|+..++.
T Consensus 554 ~sYDiRDRaRF~r~l~~ 570 (968)
T KOG1060|consen 554 LSYDIRDRARFLRQLIS 570 (968)
T ss_pred CCcchhHHHHHHHHHhc
Confidence 45556777788888774
No 144
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=25.79 E-value=4e+02 Score=30.63 Aligned_cols=67 Identities=21% Similarity=0.289 Sum_probs=44.2
Q ss_pred HHHHHHHhhcccCCccccchHHHhhhccCCC-CcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccCCCH
Q 002148 456 ALFCIRAISTYVSVVEAEVMPQVMALLPKLP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE 531 (959)
Q Consensus 456 ~l~~l~~l~e~~~~~~~~~l~~l~~~l~~lp-~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~ 531 (959)
.|..++.+.+.-++.-.+++|.++.+|++.. ....+......+|. ++.|+ .|.++++++.-.+.+.+
T Consensus 182 LLrvlS~Vye~~P~~i~PhlP~l~~lL~q~~p~~~~ll~~l~~LI~------Qk~~e---vL~~ciP~L~g~l~ds~ 249 (851)
T KOG3723|consen 182 LLRVLSAVYEKQPQPINPHLPELLALLSQLEPEQYHLLRLLHVLIK------QKQLE---VLQKCIPFLIGHLKDST 249 (851)
T ss_pred HHHHHHHHHhcCCCccCcccHHHHHHhcCCCHHHHHHHHHHHHHHH------hccHH---HHHHHHHHHHHHhcccc
Confidence 5667777787777766789999999998863 33333333333443 23454 78888888877666554
No 145
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=25.57 E-value=8.6e+02 Score=31.03 Aligned_cols=87 Identities=23% Similarity=0.230 Sum_probs=54.7
Q ss_pred hHHHHHHHHHhccC------CCHHHHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHH
Q 002148 515 ILASVLSILTSGMS------TSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALS 588 (959)
Q Consensus 515 ~l~~~l~~l~~~l~------~~~~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~ 588 (959)
+|..+.+++..+.+ +|+ ++.+|..|+.+|+--....-..+++-|+..+... -++-.|.+++=|+|
T Consensus 916 lLg~f~piv~e~c~n~~~~sdp~-Lq~AAtLaL~klM~iSa~fces~l~llftimeks--------p~p~IRsN~Vvalg 986 (1251)
T KOG0414|consen 916 LLGRFAPIVVEGCRNPGLFSDPE-LQAAATLALGKLMCISAEFCESHLPLLFTIMEKS--------PSPRIRSNLVVALG 986 (1251)
T ss_pred HHHHHHHHHHHHhcCCCcCCCHH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC--------CCceeeecchhecc
Confidence 56666666665553 344 9999999999998644443334556566554331 23456788898999
Q ss_pred HHHhcCChHHHHHHHHHhhhhhHHHHHHHHh
Q 002148 589 MVITELPQVDAKKALEMLCLPVVTPLQEIIN 619 (959)
Q Consensus 589 ~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~ 619 (959)
-+.-..|+ ++.|.-+.+-+-+.
T Consensus 987 Dlav~fpn---------lie~~T~~Ly~rL~ 1008 (1251)
T KOG0414|consen 987 DLAVRFPN---------LIEPWTEHLYRRLR 1008 (1251)
T ss_pred chhhhccc---------ccchhhHHHHHHhc
Confidence 88877774 45555444444443
No 146
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=24.90 E-value=8.1e+02 Score=25.61 Aligned_cols=232 Identities=11% Similarity=0.058 Sum_probs=127.1
Q ss_pred CCCcchhhHHHHHHHHhhcccCCc--cccchHHHhhhccC-CCCcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHH
Q 002148 447 HNEWRPAEAALFCIRAISTYVSVV--EAEVMPQVMALLPK-LPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSIL 523 (959)
Q Consensus 447 ~~~w~~~Ea~l~~l~~l~e~~~~~--~~~~l~~l~~~l~~-lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l 523 (959)
+.++..++-++.+++.+-+.++.+ ....+.-++++..+ +.+|+.+..+ +..+.+..+. +..+. .....++..+
T Consensus 10 sed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~~~~~-l~gl~~L~~~-~~~~~--~~~~~i~~~l 85 (262)
T PF14500_consen 10 SEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHACVQPA-LKGLLALVKM-KNFSP--ESAVKILRSL 85 (262)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhhHHHH-HHHHHHHHhC-cCCCh--hhHHHHHHHH
Confidence 467888999999999999999864 23345666666543 6555554433 4444433321 11111 2466777777
Q ss_pred HhccCCCH---HHHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCChHHHH
Q 002148 524 TSGMSTSE---DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAK 600 (959)
Q Consensus 524 ~~~l~~~~---~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~ 600 (959)
++..+.+. ..+..+-..+..+.+..+..+...-+.++..+.+...++ -++..-..+++-+-.+++..+.
T Consensus 86 ~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gE----kDPRnLl~~F~l~~~i~~~~~~---- 157 (262)
T PF14500_consen 86 FQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGE----KDPRNLLLSFKLLKVILQEFDI---- 157 (262)
T ss_pred HHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccC----CCHHHHHHHHHHHHHHHHhccc----
Confidence 76665432 355556666777777777777666677787777777663 3566777777777777777662
Q ss_pred HHHHHhhhhhHHHHHHHHhcCC-----Cccc---ccCchhhhHHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhc
Q 002148 601 KALEMLCLPVVTPLQEIINQGP-----EILQ---KKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRA 672 (959)
Q Consensus 601 ~~l~~ll~p~~~~l~~~~~~~~-----~~~~---~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~ 672 (959)
.+..+.+-.++.-.= ++++ .....++.. .+..++.+ +| .+-.-++|.+.+=+. .
T Consensus 158 -------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~---~L~~cl~s----~~--~fa~~~~p~LleKL~--s 219 (262)
T PF14500_consen 158 -------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKR---ALRNCLSS----TP--LFAPFAFPLLLEKLD--S 219 (262)
T ss_pred -------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHH---HHHHHhcC----cH--hhHHHHHHHHHHHHc--C
Confidence 233333333332111 0111 111223322 22222221 11 111334454433221 2
Q ss_pred ccHHHHHHHHHHHHHHHHHhhhh-hhhhHHHHHHHHH
Q 002148 673 WDMRTMESLCRACKYAVRTSKRF-MGITIGAILEEIQ 708 (959)
Q Consensus 673 ~~~~i~e~~~~~l~~~~~~~~~~-~~~~l~~l~~~l~ 708 (959)
..+.+...+...+..++..+|.. +.++..++.+.+-
T Consensus 220 ~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk 256 (262)
T PF14500_consen 220 TSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALK 256 (262)
T ss_pred CCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 23345666777777777777654 5577766666554
No 147
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=24.25 E-value=9.6e+02 Score=26.24 Aligned_cols=93 Identities=14% Similarity=0.174 Sum_probs=51.9
Q ss_pred ccchHHHhhhccC-CC---C-cHHHHHHHHHHHHhhhhHHhhCCCC------hhhHHHHHHHHHh-ccC-CC-----HHH
Q 002148 472 AEVMPQVMALLPK-LP---Q-QPQLLQTVCLTIGAYSKWFDAASSD------PSILASVLSILTS-GMS-TS-----EDT 533 (959)
Q Consensus 472 ~~~l~~l~~~l~~-lp---~-~~~v~~t~~~~ig~y~~~l~~~p~~------~~~l~~~l~~l~~-~l~-~~-----~~v 533 (959)
...+|.++.++.. .. . +-.+....+.++.+ +-.||.. +.++|.++..++. -+. .+ -.+
T Consensus 209 ~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~A----Ll~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~L 284 (343)
T cd08050 209 QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRA----LLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWAL 284 (343)
T ss_pred hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHH----HhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHH
Confidence 4567777777643 11 1 12233333333333 3444442 3456666666542 111 11 148
Q ss_pred HHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHhh
Q 002148 534 AAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVN 568 (959)
Q Consensus 534 ~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~~~ 568 (959)
+.-||..+..+|+.+...-..--+.+...+...+-
T Consensus 285 Rd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~ 319 (343)
T cd08050 285 RDYAARLLAQICRKFSTSYNTLQPRITRTLLKALL 319 (343)
T ss_pred HHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHc
Confidence 99999999999999887544445566666666554
No 148
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=23.83 E-value=6.7e+02 Score=24.23 Aligned_cols=58 Identities=10% Similarity=0.131 Sum_probs=44.9
Q ss_pred CCCCCcHHHHHHHHHHHHhhCCCcccCcCChHHHHHHHHHhccCCCchhHHHHHHHHHHhhcC
Q 002148 762 TSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDL 824 (959)
Q Consensus 762 ~~~pDl~~~~f~l~~~~~~~~p~~~l~s~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~li~~ 824 (959)
++-=|+++..|.++.+++..|+..+ .+..+++....|+.- +.+..-.++..+.+++..
T Consensus 38 DDGLelRK~ayE~lytlLd~~~~~~----~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~ 95 (169)
T PF08623_consen 38 DDGLELRKAAYECLYTLLDTCLSRI----DISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQL 95 (169)
T ss_dssp EGGGHHHHHHHHHHHHHHHSTCSSS-----HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhC----CHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHh
Confidence 3445699999999999999877654 256778888888865 778888888888888765
No 149
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=23.58 E-value=5.5e+02 Score=24.24 Aligned_cols=74 Identities=14% Similarity=0.046 Sum_probs=45.4
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHhcChhhHHHHHHHhccCCCChhHHHHHHHHHHhhhhcCCCCCChhhHHHHHHH
Q 002148 7 VKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDS 86 (959)
Q Consensus 7 v~~av~~l~~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~~~faa~~L~~ki~~~w~~l~~~~~~~lr~~ 86 (959)
+..++..+- -.+++..+++.+.|.... +-.-.-|.++|...-.+..+|.||-..|+ ..++++....--+
T Consensus 41 lp~~L~sv~-w~~~~~~~e~~~lL~~W~--~~~~~~aL~LL~~~~~~~~vr~yAv~~L~--------~~~~~~l~~ylpQ 109 (152)
T cd00864 41 LPKLLKSVN-WNDDEEVSELYQLLKWWA--PLSPEDALELLSPKYPDPVVRQYAVRVLE--------SASDDELLLYLPQ 109 (152)
T ss_pred HHHHHHHcc-CCCHHHHHHHHHHHhcCC--CCCHHHHHHHcCCcCCCHHHHHHHHHHHH--------hCCHHHHHHHHHH
Confidence 444444442 357777777777776653 33345678888754466788888888776 3455555544445
Q ss_pred HHHHH
Q 002148 87 LNTLL 91 (959)
Q Consensus 87 Ll~~l 91 (959)
|++.|
T Consensus 110 LVQaL 114 (152)
T cd00864 110 LVQAL 114 (152)
T ss_pred HHHHH
Confidence 55555
No 150
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.86 E-value=6.8e+02 Score=29.67 Aligned_cols=143 Identities=14% Similarity=0.131 Sum_probs=90.5
Q ss_pred hHHHHHHHHHhhHHHHHhhhc--cChHHHHHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHhhcccCCccccchHHHh
Q 002148 402 LKEFKHTRYAVADVLIDAASV--LGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVM 479 (959)
Q Consensus 402 ~~~f~~~R~~~~d~l~~~~~i--l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~l~e~~~~~~~~~l~~l~ 479 (959)
+|+|.+.|+..-+.+-..+.- -=+...+.++.+.++..+. .-+.-++|++..++..+.-. .+.++.++
T Consensus 383 EDEf~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~---------~VRL~ai~aL~~Is~~l~i~-eeql~~il 452 (823)
T KOG2259|consen 383 EDEFYEVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIE---------VVRLKAIFALTMISVHLAIR-EEQLRQIL 452 (823)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHH---------HHHHHHHHHHHHHHHHheec-HHHHHHHH
Confidence 378999998876655444321 1124577777777776432 12467899999999886543 35677777
Q ss_pred hhccCCCCcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHhhhhhhCCHHH
Q 002148 480 ALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMST-SEDTAAAAALAFRHICDDCRKKLCGYLDG 558 (959)
Q Consensus 480 ~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~-~~~v~~~A~~al~~lc~~c~~~L~~~~~~ 558 (959)
..|-.- .+.+|...-++++.. +.++ ...+..++..++.++.. |. =+.....++.+|-+.-+..+...+..
T Consensus 453 ~~L~D~--s~dvRe~l~elL~~~-----~~~d-~~~i~m~v~~lL~~L~kyPq-Drd~i~~cm~~iGqnH~~lv~s~m~r 523 (823)
T KOG2259|consen 453 ESLEDR--SVDVREALRELLKNA-----RVSD-LECIDMCVAHLLKNLGKYPQ-DRDEILRCMGRIGQNHRRLVLSNMGR 523 (823)
T ss_pred HHHHhc--CHHHHHHHHHHHHhc-----CCCc-HHHHHHHHHHHHHHhhhCCC-CcHHHHHHHHHHhccChhhHHHHHHH
Confidence 766543 566788887777652 2222 13566677777766653 33 35566777888888777665555555
Q ss_pred HHHHH
Q 002148 559 LYNVY 563 (959)
Q Consensus 559 ll~~~ 563 (959)
|+...
T Consensus 524 fl~kh 528 (823)
T KOG2259|consen 524 FLEKH 528 (823)
T ss_pred HHHhc
Confidence 55444
No 151
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=22.61 E-value=1e+03 Score=25.91 Aligned_cols=137 Identities=14% Similarity=0.147 Sum_probs=83.6
Q ss_pred CCCcchhhHHHHHHHHhhcccCCccc----cchHHHhhhccCCCCcHHHHHHHHHHHHhhhhHHhhCCCCh------hhH
Q 002148 447 HNEWRPAEAALFCIRAISTYVSVVEA----EVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDP------SIL 516 (959)
Q Consensus 447 ~~~w~~~Ea~l~~l~~l~e~~~~~~~----~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~------~~l 516 (959)
..+-++.|.++.-+....+.++...+ ..+..++..+-+ .++.+|..+.++||... .+||... ..+
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~--~~~~lR~~Aa~Vigt~~---qNNP~~Qe~v~E~~~L 168 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLEN--SDAELRELAARVIGTAV---QNNPKSQEQVIELGAL 168 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcC--CcHHHHHHHHHHHHHHH---hcCHHHHHHHHHcccH
Confidence 56789999999999999999875432 233444442222 36889999999999875 5565411 134
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhh-----CCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHH
Q 002148 517 ASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLC-----GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVI 591 (959)
Q Consensus 517 ~~~l~~l~~~l~~~~~v~~~A~~al~~lc~~c~~~L~-----~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi 591 (959)
.+++..+. -..+.+++..|-+|+..+.+.-..-.. +-...+++.+++ + +.+..-+.+++.=++.++
T Consensus 169 ~~Ll~~ls--~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~----~---~~~~~lkrK~~~Ll~~Ll 239 (342)
T KOG2160|consen 169 SKLLKILS--SDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQS----N---NTSVKLKRKALFLLSLLL 239 (342)
T ss_pred HHHHHHHc--cCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHc----C---CcchHHHHHHHHHHHHHH
Confidence 44444443 233444777887787777764432111 234444444433 1 234556777888888888
Q ss_pred hcCChH
Q 002148 592 TELPQV 597 (959)
Q Consensus 592 ~~~p~~ 597 (959)
+..+.+
T Consensus 240 ~~~~s~ 245 (342)
T KOG2160|consen 240 QEDKSD 245 (342)
T ss_pred Hhhhhh
Confidence 776543
No 152
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=22.38 E-value=1.4e+02 Score=20.65 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=17.1
Q ss_pred HHHhccCCC-HHHHHHHHHHHHHHHH
Q 002148 522 ILTSGMSTS-EDTAAAAALAFRHICD 546 (959)
Q Consensus 522 ~l~~~l~~~-~~v~~~A~~al~~lc~ 546 (959)
.+.+.+.++ .+++..|+.|+.++|.
T Consensus 16 ~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 16 PLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 333444443 3599999999999873
No 153
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=22.17 E-value=5.3e+02 Score=32.71 Aligned_cols=112 Identities=16% Similarity=0.253 Sum_probs=67.3
Q ss_pred cChHHHHHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHh---hcccCCccccchHHHhhhccCCCCcHHHHHHHHHHH
Q 002148 423 LGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAI---STYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTI 499 (959)
Q Consensus 423 l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~l---~e~~~~~~~~~l~~l~~~l~~lp~~~~v~~t~~~~i 499 (959)
.|+..++..+.+.+.+.+.+.+. ..+-.-.-||..+++-+ +-.+. ...++-+|..+..-| .|.+|..++-.+
T Consensus 911 ~gek~lLg~f~piv~e~c~n~~~-~sdp~Lq~AAtLaL~klM~iSa~fc---es~l~llftimeksp-~p~IRsN~Vval 985 (1251)
T KOG0414|consen 911 YGEKSLLGRFAPIVVEGCRNPGL-FSDPELQAAATLALGKLMCISAEFC---ESHLPLLFTIMEKSP-SPRIRSNLVVAL 985 (1251)
T ss_pred cChHHHHHHHHHHHHHHhcCCCc-CCCHHHHHHHHHHHHHHhhhhHHHH---HHHHHHHHHHHhcCC-Cceeeecchhec
Confidence 46577888888888888765432 22322233555555532 22221 345777777766555 677777776666
Q ss_pred HhhhhHHhhCCCChhhHHHHHHHHHhccCCCH-HHHHHHHHHHHHHH
Q 002148 500 GAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHIC 545 (959)
Q Consensus 500 g~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~lc 545 (959)
|-++ -+.|. ++++--.++.+-+++++ .|+..|...+..+.
T Consensus 986 gDla---v~fpn---lie~~T~~Ly~rL~D~~~~vRkta~lvlshLI 1026 (1251)
T KOG0414|consen 986 GDLA---VRFPN---LIEPWTEHLYRRLRDESPSVRKTALLVLSHLI 1026 (1251)
T ss_pred cchh---hhccc---ccchhhHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 6544 44454 66677777777777653 36666666666655
No 154
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=21.65 E-value=9.9e+02 Score=25.42 Aligned_cols=16 Identities=13% Similarity=0.258 Sum_probs=9.0
Q ss_pred CcHHHHHHHHHHHHhh
Q 002148 766 DVADDCFLLASRCIRY 781 (959)
Q Consensus 766 Dl~~~~f~l~~~~~~~ 781 (959)
++..+++.++.+.+..
T Consensus 60 ~~a~~~l~l~~~~~~~ 75 (298)
T PF12719_consen 60 ELAKEHLPLFLQALQK 75 (298)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4555666655555544
No 155
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=21.54 E-value=1.2e+03 Score=26.44 Aligned_cols=60 Identities=7% Similarity=-0.005 Sum_probs=42.2
Q ss_pred ccHHHHHHHHHHHHHHHHHh-hhhhhhhHHHHHHHHHHHHhhcCC---cchhHhHHHHHHHhCC
Q 002148 673 WDMRTMESLCRACKYAVRTS-KRFMGITIGAILEEIQGLYQQHQQ---PCFLYLSSEVIKIFGS 732 (959)
Q Consensus 673 ~~~~i~e~~~~~l~~~~~~~-~~~~~~~l~~l~~~l~~~~~~~~~---~~~L~l~~~li~~~~~ 732 (959)
.|.++.-.+...+.+++..+ .+.+.+.+|.+...++++|..... -+.++++-.++...|.
T Consensus 418 ~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~ 481 (516)
T KOG2956|consen 418 ADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGM 481 (516)
T ss_pred CcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhH
Confidence 34444445555666666664 446668889999999999986543 3578888889999883
No 156
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=21.48 E-value=5.1e+02 Score=22.05 Aligned_cols=84 Identities=21% Similarity=0.114 Sum_probs=50.2
Q ss_pred hhHHHHHHHhccCCCChhHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhcc
Q 002148 38 DAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHIS 117 (959)
Q Consensus 38 ~aw~~~~~lL~~~~~~~~~~~faa~~L~~ki~~~w~~l~~~~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~ 117 (959)
+..+-+..-|.+ ..+.+|-.|..+|++.|.++- .+......+-.-+++.+.. ..++|-=..-..|+.++-..
T Consensus 3 ~~~~~al~~L~d--p~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d---~DsyVYL~aI~~L~~La~~~- 74 (92)
T PF10363_consen 3 ETLQEALSDLND--PLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKD---EDSYVYLNAIKGLAALADRH- 74 (92)
T ss_pred HHHHHHHHHccC--CCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCC---CCchHHHHHHHHHHHHHHHC-
Confidence 344555666665 345699999999999999765 3333444444444444433 45566555666777777543
Q ss_pred ccccCCccchHHHHHhc
Q 002148 118 AEDWGGGGIVNWLRDEM 134 (959)
Q Consensus 118 ~~~Wp~~~~~~~l~~~l 134 (959)
|+ ..++.+++..
T Consensus 75 ----p~-~vl~~L~~~y 86 (92)
T PF10363_consen 75 ----PD-EVLPILLDEY 86 (92)
T ss_pred ----hH-HHHHHHHHHH
Confidence 22 1555555544
No 157
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=20.04 E-value=1.4e+03 Score=27.98 Aligned_cols=179 Identities=17% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHhhhccChHHHHHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHhhcccCCcc----------------ccchHH
Q 002148 414 DVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVE----------------AEVMPQ 477 (959)
Q Consensus 414 d~l~~~~~il~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~l~e~~~~~~----------------~~~l~~ 477 (959)
|+++.+. -+..++-..++-.+... ...|. +-++.++.++-..+...+ .+.++.
T Consensus 59 dViK~~~--trd~ElKrL~ylYl~~y-------ak~~P--~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~~~el~~~ 127 (757)
T COG5096 59 DVIKNVA--TRDVELKRLLYLYLERY-------AKLKP--ELALLAVNTIQKDLQDPNEEIRGFALRTLSLLRVKELLGN 127 (757)
T ss_pred HHHHHHH--hcCHHHHHHHHHHHHHH-------hccCH--HHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcChHHHHHH
Q ss_pred HhhhccCC--CCcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHH-HHHHHhcc---CCCHHHHHHHHHHHHHHHHHhhhh
Q 002148 478 VMALLPKL--PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASV-LSILTSGM---STSEDTAAAAALAFRHICDDCRKK 551 (959)
Q Consensus 478 l~~~l~~l--p~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~-l~~l~~~l---~~~~~v~~~A~~al~~lc~~c~~~ 551 (959)
++..+.+. ..|+.||+++...++++ +...++ +.+.. +.-+...+ .+|. |.+.|-.+++.++.+ .
T Consensus 128 ~~~~ik~~l~d~~ayVRk~Aalav~kl---y~ld~~---l~~~~g~~~~l~~l~~D~dP~-Vi~nAl~sl~~i~~e---~ 197 (757)
T COG5096 128 IIDPIKKLLTDPHAYVRKTAALAVAKL---YRLDKD---LYHELGLIDILKELVADSDPI-VIANALASLAEIDPE---L 197 (757)
T ss_pred HHHHHHHHccCCcHHHHHHHHHHHHHH---HhcCHh---hhhcccHHHHHHHHhhCCCch-HHHHHHHHHHHhchh---h
Q ss_pred hhCCHHHHHHHHHHHhhccCCCCCC---HhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHH
Q 002148 552 LCGYLDGLYNVYRTAVNGEGSLKVS---AEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEII 618 (959)
Q Consensus 552 L~~~~~~ll~~~~~~~~~~~~~~l~---~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~ 618 (959)
..+|...+...+.++.-.. .. ...+...++.+..-....|. +.......+..|....-...+
T Consensus 198 a~~~~~~~~~~i~~l~~~~----~~~~~~~~~~~~le~L~~~~~~~~~-s~~~~~~~~~~~~~~~n~~vl 262 (757)
T COG5096 198 AHGYSLEVILRIPQLDLLS----LSVSTEWLLLIILEVLTERVPTTPD-SAEDFEERLSPPLQHNNAEVL 262 (757)
T ss_pred hhhHHHHHHHHhhhccchh----hhhhHHHHHHHHHHHHHccCCCCCC-cHHHHHHhccchhhhCcHHHH
Done!