Query 002148
Match_columns 959
No_of_seqs 201 out of 1521
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 14:22:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002148.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002148hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2x1g_F Cadmus; transport prote 100.0 9.5E-92 3.2E-96 887.0 70.6 887 4-937 6-966 (971)
2 3ibv_A Exportin-T; karyopherin 100.0 1.9E-90 6.4E-95 853.9 69.0 877 4-936 5-977 (980)
3 2x19_B Importin-13; nuclear tr 100.0 9.4E-88 3.2E-92 851.5 87.3 887 3-937 22-954 (963)
4 4hat_C Exportin-1; heat repeat 100.0 2.4E-89 8.2E-94 843.2 69.3 878 4-936 15-1006(1023)
5 3gjx_A Exportin-1; transport, 100.0 5.4E-89 1.8E-93 832.4 66.3 910 4-955 27-1069(1073)
6 3m1i_C Exportin-1; heat repeat 100.0 1.5E-77 5E-82 759.4 64.9 881 4-938 15-1008(1049)
7 3a6p_A Exportin-5; exportin-5, 100.0 5.1E-63 1.8E-67 626.6 46.7 888 3-937 9-1160(1204)
8 1wa5_C Importin alpha RE-expor 100.0 2.2E-37 7.4E-42 388.7 57.6 718 1-822 1-790 (960)
9 4fdd_A Transportin-1; heat rep 100.0 7.4E-36 2.5E-40 371.4 54.7 768 3-912 11-820 (852)
10 2bpt_A Importin beta-1 subunit 100.0 3.2E-33 1.1E-37 349.7 59.2 695 1-804 1-733 (861)
11 1qgr_A Protein (importin beta 100.0 7.6E-29 2.6E-33 310.6 60.1 693 6-805 2-745 (876)
12 1ibr_B P95, importin beta-1 su 99.9 5.7E-23 2E-27 237.1 28.0 431 7-528 3-461 (462)
13 4fdd_A Transportin-1; heat rep 99.8 1.2E-14 4E-19 180.6 52.2 622 193-913 105-781 (852)
14 1u6g_C TIP120 protein, CAND1; 99.8 1.6E-15 5.6E-20 196.0 43.0 667 4-824 5-722 (1230)
15 1w9c_A CRM1 protein, exportin 99.7 2.3E-15 8E-20 155.4 27.6 227 697-936 68-318 (321)
16 1qgr_A Protein (importin beta 99.5 7.3E-10 2.5E-14 138.2 53.6 345 447-823 339-722 (876)
17 2bpt_A Importin beta-1 subunit 99.5 2.9E-09 1E-13 132.5 58.5 402 314-782 367-813 (861)
18 1u6g_C TIP120 protein, CAND1; 99.3 3.8E-08 1.3E-12 127.0 45.2 605 181-880 8-682 (1230)
19 1b3u_A Protein (protein phosph 99.2 1.8E-07 6.2E-12 110.6 42.1 562 4-687 9-584 (588)
20 1b3u_A Protein (protein phosph 99.0 2.9E-07 9.8E-12 108.9 32.1 481 7-590 88-585 (588)
21 2vgl_B AP-2 complex subunit be 98.2 0.00031 1E-08 82.5 28.8 462 14-589 57-529 (591)
22 2x19_B Importin-13; nuclear tr 98.1 0.0076 2.6E-07 75.4 39.7 297 491-823 423-752 (963)
23 1wa5_C Importin alpha RE-expor 98.1 0.0039 1.3E-07 77.8 36.3 159 449-610 471-646 (960)
24 1ibr_B P95, importin beta-1 su 98.1 5.9E-05 2E-09 85.8 18.2 271 449-732 143-441 (462)
25 2qk1_A Protein STU2; STU2P, XM 98.0 9.6E-05 3.3E-09 75.8 15.8 185 447-649 27-224 (249)
26 2qk2_A LP04448P; mini spindles 97.8 0.00016 5.5E-09 74.1 12.9 178 447-648 26-208 (242)
27 1w63_A Adapter-related protein 97.8 0.12 4.2E-06 60.5 40.1 461 17-591 81-576 (618)
28 2x1g_F Cadmus; transport prote 97.5 0.37 1.3E-05 60.0 52.0 300 487-824 476-815 (971)
29 2qk1_A Protein STU2; STU2P, XM 97.4 0.0023 8E-08 65.4 15.9 165 447-618 72-246 (249)
30 4hat_C Exportin-1; heat repeat 97.3 0.016 5.6E-07 71.6 24.3 311 488-825 466-835 (1023)
31 2vgl_B AP-2 complex subunit be 97.2 0.033 1.1E-06 65.1 24.5 210 447-691 97-312 (591)
32 4b8j_A Importin subunit alpha- 97.2 0.46 1.6E-05 54.4 34.0 385 223-690 76-496 (528)
33 2qk2_A LP04448P; mini spindles 97.2 0.016 5.3E-07 59.1 18.7 187 488-703 28-219 (242)
34 1w63_A Adapter-related protein 97.2 0.61 2.1E-05 54.5 37.5 229 448-706 119-358 (618)
35 2jdq_A Importin alpha-1 subuni 96.9 0.38 1.3E-05 53.6 28.3 315 224-600 23-355 (450)
36 1wa5_B Importin alpha subunit; 96.8 0.59 2E-05 53.5 29.8 329 448-824 99-458 (530)
37 1wa5_B Importin alpha subunit; 96.7 0.056 1.9E-06 62.2 20.1 337 449-823 144-510 (530)
38 3gjx_A Exportin-1; transport, 96.7 0.066 2.2E-06 66.1 21.4 319 488-825 492-861 (1073)
39 3ibv_A Exportin-T; karyopherin 96.7 0.16 5.4E-06 62.7 24.7 86 528-622 712-797 (980)
40 4b8j_A Importin subunit alpha- 96.6 0.27 9.1E-06 56.4 24.8 334 448-824 86-444 (528)
41 2vgl_A Adaptor protein complex 96.6 0.67 2.3E-05 54.1 28.0 135 448-591 123-269 (621)
42 2jdq_A Importin alpha-1 subuni 96.6 0.65 2.2E-05 51.7 27.4 334 192-593 34-391 (450)
43 2vgl_A Adaptor protein complex 96.4 2.3 7.8E-05 49.5 33.8 129 16-153 84-216 (621)
44 3tpo_A Importin subunit alpha- 95.4 4.8 0.00016 45.8 29.9 397 222-689 77-496 (529)
45 3m1i_C Exportin-1; heat repeat 95.4 8 0.00028 48.2 58.2 316 487-825 465-835 (1049)
46 3ul1_B Importin subunit alpha- 95.0 6.3 0.00022 44.5 29.3 388 232-689 70-477 (510)
47 3ul1_B Importin subunit alpha- 94.2 1.3 4.5E-05 50.3 18.6 312 474-824 101-431 (510)
48 3tpo_A Importin subunit alpha- 93.8 2.9 9.8E-05 47.7 20.5 312 473-824 119-450 (529)
49 2of3_A ZYG-9; multifunctional 93.4 1.1 3.9E-05 45.2 14.0 136 328-506 99-238 (266)
50 4hxt_A De novo protein OR329; 92.6 2.6 8.7E-05 42.2 15.8 218 448-691 14-242 (252)
51 2iw3_A Elongation factor 3A; a 92.4 2.2 7.4E-05 51.7 16.8 222 454-691 70-325 (986)
52 1xqr_A HSPBP1 protein; armadil 92.1 11 0.00038 38.9 20.0 149 474-646 82-239 (296)
53 2z6g_A B-catenin; FULL-length, 92.0 26 0.00087 41.9 34.3 253 14-301 158-428 (780)
54 3u0r_A Apoptosis inhibitor 5; 90.7 17 0.00059 39.5 19.6 278 488-787 41-365 (507)
55 4db6_A Armadillo repeat protei 90.5 1 3.5E-05 43.9 9.8 138 447-593 23-168 (210)
56 1w9c_A CRM1 protein, exportin 89.3 4 0.00014 42.2 13.0 169 194-385 45-221 (321)
57 4db6_A Armadillo repeat protei 88.7 4.7 0.00016 39.0 13.0 134 447-591 65-208 (210)
58 3a6p_A Exportin-5; exportin-5, 88.4 62 0.0021 40.8 33.3 151 769-933 504-675 (1204)
59 4db8_A Armadillo-repeat protei 87.6 7.9 0.00027 38.6 14.4 216 448-687 24-248 (252)
60 1oyz_A Hypothetical protein YI 87.5 26 0.00089 35.4 21.3 213 7-246 25-248 (280)
61 4db8_A Armadillo-repeat protei 86.7 2 6.7E-05 43.2 9.1 133 448-593 66-210 (252)
62 1xqr_A HSPBP1 protein; armadil 85.8 2.6 8.8E-05 43.7 9.4 136 448-594 94-240 (296)
63 4hxt_A De novo protein OR329; 85.5 14 0.00047 36.6 14.9 221 7-251 4-244 (252)
64 2iw3_A Elongation factor 3A; a 85.5 4.7 0.00016 48.8 12.6 198 373-592 89-324 (986)
65 3ltj_A Alpharep-4; protein eng 85.0 12 0.00041 35.7 13.6 109 447-590 56-165 (201)
66 2z6h_A Catenin beta-1, beta-ca 84.5 66 0.0023 37.2 39.7 304 220-596 13-340 (644)
67 2z6g_A B-catenin; FULL-length, 83.9 78 0.0027 37.6 24.9 135 448-592 162-305 (780)
68 3ltm_A Alpha-REP4; protein eng 81.6 18 0.00061 34.8 13.3 109 447-590 61-170 (211)
69 1jdh_A Beta-catenin; beta-cate 78.9 86 0.0029 34.9 24.2 335 448-823 29-385 (529)
70 1oyz_A Hypothetical protein YI 74.5 47 0.0016 33.4 14.6 118 447-591 102-220 (280)
71 3ltj_A Alpharep-4; protein eng 74.4 59 0.002 30.6 18.5 109 447-590 25-134 (201)
72 1xm9_A Plakophilin 1; armadill 71.6 1.2E+02 0.0042 33.1 26.3 349 448-823 14-449 (457)
73 3now_A UNC-45 protein, SD10334 70.1 1.8E+02 0.0062 34.4 33.7 483 19-593 163-738 (810)
74 3now_A UNC-45 protein, SD10334 65.2 2.2E+02 0.0076 33.7 34.9 273 408-708 220-546 (810)
75 2z6h_A Catenin beta-1, beta-ca 61.4 2.3E+02 0.0078 32.5 36.5 255 12-301 20-292 (644)
76 4ffb_C Protein STU2; tubulin f 58.4 65 0.0022 32.5 11.6 186 577-782 23-214 (278)
77 1jdh_A Beta-catenin; beta-cate 56.0 2.4E+02 0.0082 31.1 40.9 134 449-596 199-343 (529)
78 4ady_A RPN2, 26S proteasome re 50.6 3E+02 0.01 33.1 16.6 103 453-568 595-698 (963)
79 2db0_A 253AA long hypothetical 47.0 1.9E+02 0.0064 27.2 18.0 198 447-687 43-243 (253)
80 3ltm_A Alpha-REP4; protein eng 46.4 1.6E+02 0.0056 27.6 11.8 54 11-67 86-139 (211)
81 3tjz_B Coatomer subunit gamma; 39.7 74 0.0025 33.5 8.3 63 487-557 116-179 (355)
82 3oc3_A Helicase MOT1, MOT1; re 38.5 2.4E+02 0.0082 31.6 11.9 102 451-569 243-345 (800)
83 4atg_A TAF6; transcription, TF 37.0 2.7E+02 0.0094 26.2 11.7 114 494-614 61-180 (196)
84 3nmw_A APC variant protein; AR 36.5 2E+02 0.0069 30.1 11.3 142 448-596 183-338 (354)
85 1te4_A Conserved protein MTH18 33.2 1.2E+02 0.004 26.2 7.6 53 11-66 47-99 (131)
86 3tt9_A Plakophilin-2; cell adh 30.8 3.2E+02 0.011 26.6 10.8 135 448-590 64-227 (233)
87 1xm9_A Plakophilin 1; armadill 29.9 1.2E+02 0.0041 33.2 8.6 112 449-565 57-196 (457)
88 3nmz_A APC variant protein; pr 29.5 1.9E+02 0.0066 31.6 10.0 141 448-595 299-453 (458)
89 4ady_A RPN2, 26S proteasome re 27.1 4.4E+02 0.015 31.6 12.9 151 425-607 505-656 (963)
90 4ffb_C Protein STU2; tubulin f 26.1 2.7E+02 0.0091 27.7 9.9 64 762-825 150-214 (278)
91 1te4_A Conserved protein MTH18 24.1 1.4E+02 0.0048 25.7 6.4 49 14-65 81-129 (131)
92 1vsy_4 Proteasome activator BL 23.8 9.4E+02 0.032 28.3 21.4 310 488-822 352-686 (799)
93 2of3_A ZYG-9; multifunctional 20.7 6.3E+02 0.021 25.1 18.3 169 52-251 58-239 (266)
No 1
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=100.00 E-value=9.5e-92 Score=886.97 Aligned_cols=887 Identities=20% Similarity=0.344 Sum_probs=732.5
Q ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcChhhHHHHHHHhccCCCChhHHHHHHHHHHhhhhcCCCCCChhhHHHH
Q 002148 4 QNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGL 83 (959)
Q Consensus 4 ~~~v~~av~~l~~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~~~faa~~L~~ki~~~w~~l~~~~~~~l 83 (959)
+++|+++++++| ++|++.|++|++||++||++|++|.+|.+||.. +.+.++|||||++|+++|+++|+.++++++..+
T Consensus 6 ~~~l~~~l~~~~-~~d~~~r~~A~~~L~~~~~~p~~w~~~~~lL~~-~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~i 83 (971)
T 2x1g_F 6 IARLEEAVVSFY-RSNSQNQAITHEWLTDAEASPQAWQFSWQLMQL-GKSQEVQFFGAITLHSKLMKHWHEVPPENREEL 83 (971)
T ss_dssp -----CTHHHHH-TSTTTC----CHHHHHTTTSTHHHHHHHHHTCT-TSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHH
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHH
Confidence 567999999977 568889999999999999999999999999986 678899999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCC-------CCCchhhHHHHhcccccccc
Q 002148 84 QDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNS-------HPEFVPGFLELLTVLPEEVF 156 (959)
Q Consensus 84 r~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~l~~-------~~~~~~~~L~~L~~l~EE~~ 156 (959)
|+.|++++.+...+++.||+|+|.+++.++.+.+| .||+ +++++.+.+++ ++..+..++++|+.++||+.
T Consensus 84 r~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p-~Wp~--~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~ 160 (971)
T 2x1g_F 84 KQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG-EWPG--AIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQ 160 (971)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC-C--------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc-cccH--HHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHh
Confidence 99999999997666899999999999999999998 9999 99999988865 23457899999999999987
Q ss_pred cccccCChhHHHHHHHHHHHhHHHHHHHHHHhhhhh----------HhHHHHHHHHHHHHhccCCCCCcccccchhHHHH
Q 002148 157 NYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN----------ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTA 226 (959)
Q Consensus 157 ~~~~~l~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~----------~~~~~~l~~~~sWi~~~~~~~~~~~~~~~ll~~~ 226 (959)
+.+ +..+|..+++.+..+++.|++++.++++.. ++...+++|+.+|+.++ .+|.+ ...++++.+
T Consensus 161 ~~~---~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~-~ip~~--~~~~ll~~l 234 (971)
T 2x1g_F 161 VIH---TSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNI-GYTIE--GCVTITAVL 234 (971)
T ss_dssp HCC---CSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHS-CCCGG--GHHHHHHHH
T ss_pred ccC---cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhC-CcCcc--ccccHHHHH
Confidence 543 456788889999999999999998887642 57899999999999952 25655 557899988
Q ss_pred HhcC------------------CCCchHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhhh--cCCC-
Q 002148 227 LSSL------------------HSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTD--SSKD- 285 (959)
Q Consensus 227 ~~~L------------------~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~l~~--~~~d- 285 (959)
|+ | .+++++++|++|+.++++.++. .+..+++..+++.++++...+.. .++|
T Consensus 235 ~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~ 307 (971)
T 2x1g_F 235 LE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDC------HNYPKTAFVLIKMFLDSLSEITKTEWKREN 307 (971)
T ss_dssp HH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGG------GGCHHHHHHHHHHHHHHHHHHHHHHSSSSC
T ss_pred Hh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccc------cccHHHHHHHHHHHHHhHHHHHHHHhcccc
Confidence 87 6 4567899999999999986432 24567888888887776555431 3344
Q ss_pred --HHHHHHHHHHHHHhhhHHHHHHh----c----CCchHHHHHHHHHhhccC----C-CcchhhhhHHhHHHhHHHHhhc
Q 002148 286 --EEDVKAIARLFADMGDSYVELIA----T----GSDESMLIVHALLEVASH----P-EYDIASMTFNFWHSLQVILTKR 350 (959)
Q Consensus 286 --~e~~~~l~~l~~~~~~~~~~~l~----~----~~~~~~~~l~~ll~~~~~----~-~~~v~~~~l~fW~~l~~~~~~~ 350 (959)
++....++++++++++.+...+. + .++.+..+++.++.++.+ + +++++..+++||+.+.+.....
T Consensus 308 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~ 387 (971)
T 2x1g_F 308 DNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAM 387 (971)
T ss_dssp SCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhc
Confidence 37888999999999999888776 3 224577899999999877 3 7899999999999998854321
Q ss_pred ccccccCcccchHHHHHHHHhhhHHHHHHHHHHHHhhccCCCC--CCCCChhhhHHHHHHHHHhhHHHHHhhhccChHHH
Q 002148 351 DSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQD--YQDLSLEDLKEFKHTRYAVADVLIDAASVLGGDAT 428 (959)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~d--~~~~~~d~~~~f~~~R~~~~d~l~~~~~il~~~~~ 428 (959)
.. +. ........++|++.++++.++.|+.||+| +++||.+|+++|.+||++++|++++++.++| +.+
T Consensus 388 ~~----~~------~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~-~~~ 456 (971)
T 2x1g_F 388 SN----DE------QKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN-DYI 456 (971)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT-THH
T ss_pred cc----cc------chHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh-HHH
Confidence 00 00 00124568899999999999999999975 4568888889999999999999999999998 678
Q ss_pred HHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHhhcccCCccccchHHHhhhccCCC-C--cHHHHHHHHHHHHhhhhH
Q 002148 429 LKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLP-Q--QPQLLQTVCLTIGAYSKW 505 (959)
Q Consensus 429 l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~l~e~~~~~~~~~l~~l~~~l~~lp-~--~~~v~~t~~~~ig~y~~~ 505 (959)
++.+.+.+.+.+.+...++.+|+.+||++|+++++++++..+..+.++++++.+++++ . ||.||.++++++|+|++|
T Consensus 457 l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~ 536 (971)
T 2x1g_F 457 LEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNW 536 (971)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHH
Confidence 8888888887754311114789999999999999999998877788999999777766 3 999999999999999999
Q ss_pred HhhCCCChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHH
Q 002148 506 FDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVE 585 (959)
Q Consensus 506 l~~~p~~~~~l~~~l~~l~~~l~~~~~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~e 585 (959)
+..||+ ++++++++++.+++ +. |+.+||+||.+||++|+..|.||++.|++.+.++++.+ .++.+++..+++
T Consensus 537 l~~~~~---~l~~vl~~l~~~l~-~~-v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~---~~~~~~~~~~~~ 608 (971)
T 2x1g_F 537 LMENPA---YIPPAINLLVRGLN-SS-MSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTG---RMKNSDSVRLMF 608 (971)
T ss_dssp HC-------CHHHHHHHHHHHHH-SS-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHST---TSCHHHHHHHHH
T ss_pred HhcCHH---HHHHHHHHHHHHhC-hH-HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCC---CCChHHHHHHHH
Confidence 999986 89999999999994 66 99999999999999999999999999999999998863 467899999999
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCC-----------cccHH
Q 002148 586 ALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNH-----------PEAVA 654 (959)
Q Consensus 586 ai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-----------~~~~~ 654 (959)
++|.+++++|.++..+++..++.|+++.++++.++...+ ++........+++|+.+++++.. ++++.
T Consensus 609 ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~--~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~ 686 (971)
T 2x1g_F 609 SIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKT--PAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVL 686 (971)
T ss_dssp HHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---C--HHHHHHHHHHHHHHHHHHHHHTC-------------CCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--hhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchH
Confidence 999999999878888999999999999999987654311 11223456788999999998764 46788
Q ss_pred HHHHHHhHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCCcchhHhHHHHHHHhCCCc
Q 002148 655 DAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDP 734 (959)
Q Consensus 655 ~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~~~~~~ 734 (959)
++.+++||++..+++.+.++.+++|.+|++++++++++|..+.|++|++++.+...|+..+++|++++++.++..||.++
T Consensus 687 ~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~~~~l~l~~~~i~~~~~~~ 766 (971)
T 2x1g_F 687 LVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCCAPTLEISKTAIVMFFKDE 766 (971)
T ss_dssp HHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CCHHHHHHHHHHHTTCCC--
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCc
Confidence 99999999999999998888899999999999999999999999999999999999999999999999999999999987
Q ss_pred cchHHHHHHHHHHHHHHHHhhcCc--ccCCCCCCcHHHHHHHHHHHHhhCCCcccCcCC-hHHHHHHHHHhccCCCchhH
Q 002148 735 SCASYLHNLIEALFKRTTCLLTSI--EEFTSRPDVADDCFLLASRCIRYCPQLFIPSSV-FPSLVDCSMIGITVQHREAS 811 (959)
Q Consensus 735 ~~~~~l~~~~~~l~~~~~~~l~~~--~~~~~~pDl~~~~f~l~~~~~~~~p~~~l~s~~-l~~~~~~~~~~l~~~~~~~~ 811 (959)
.+.+.+.+++..++.+++.++.+. ++.+++||++++||+|+.++++++|..+++++. +..++++++.+++.+|+++.
T Consensus 767 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~~~~l~~~~~~~~ 846 (971)
T 2x1g_F 767 GCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQRGMTLPESGAI 846 (971)
T ss_dssp ---HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHHHHHHHHHHHHTSSCSSHH
T ss_pred chHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHH
Confidence 788999999999999999988753 246679999999999999999999999999898 99999999999999999999
Q ss_pred HHHHHHHHHhhcCcCCCCchhhHHHHHHHHhhccHHHHHHHHHHcccCCCCCCcccHHHHHHHHHHHhhHHHHHHHHHHH
Q 002148 812 NSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETVTYALLALTRAYGVRSLEWAKESV 891 (959)
Q Consensus 812 ~~~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~l~~~~~~~~~~~~a~il~~l~~~~~~~~~~wl~~~l 891 (959)
+++++||..++++.. ..+.+++++.++|+.|+..++.+++|..|++.+++++++|++++.++|+++++||.+++
T Consensus 847 ~s~~~fl~~~i~~~~------~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~s~~~~~a~~l~~l~~~~~~~~~~~l~~~l 920 (971)
T 2x1g_F 847 RNSIQFLTHFVMQSR------NHAHVTEVVLATGEQTLYTAMMCVGYLTPRSQVDKFADILLAMNRKYAAEMAVWMKSLM 920 (971)
T ss_dssp HHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGGGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC------chHHHHHHHHHhHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHHHCcHHHHHHHHHHh
Confidence 999999999997732 12347889999999999999999999999999999999999999999999999999998
Q ss_pred h--hCCCCCCCHHHHHHHHHHHHHHhcCCCchhhhHHHHHHHHHHHhh
Q 002148 892 S--LIPLTALAEVERSRFLQALSEAASGVDVNAAMAPVEELSDVCRRN 937 (959)
Q Consensus 892 ~--~~p~~~~~~~~~~~f~~~l~~~~~~~~~~~f~~~l~~F~~~~r~~ 937 (959)
. .||+.++++++|++|+++|++.+ .++|+||+.+++|+..|||.
T Consensus 921 ~~~~~p~~~~~~~~~~~f~~~l~~~~--~~~r~~~~~~~~f~~~~r~~ 966 (971)
T 2x1g_F 921 STPNFPTQLITDADKTRYTALIIKEK--VNKRLLQQHLSEMAMKTRGL 966 (971)
T ss_dssp TSSSCSCSSSCHHHHHHHHHHHHHCS--SCHHHHHHHHHHHHHHHHC-
T ss_pred cccCCCCCcCCHHHHHHHHHHHHHHH--hChHhHHHHHHHHHHHHcCc
Confidence 5 79988999999999999998753 36999999999999999984
No 2
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=100.00 E-value=1.9e-90 Score=853.94 Aligned_cols=877 Identities=14% Similarity=0.207 Sum_probs=682.4
Q ss_pred HHHHHHHHHHHccC-CCHHHHHHHHHHHHHHhcChhhHHHHHHHhccCCC-ChhHHHHHHHHHHhhhhcCCCCCChh---
Q 002148 4 QNTVKEALNALYHH-PDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATS-NLETLIFCSQTLRSKVQRDVEELPSE--- 78 (959)
Q Consensus 4 ~~~v~~av~~l~~~-~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~-~~~~~~faa~~L~~ki~~~w~~l~~~--- 78 (959)
.++|.+||+..|++ +|++.|++|++||++||++|++|++|..+|.+++. +.++||||+++|+++|+ .++++
T Consensus 5 ~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~----~l~~e~~~ 80 (980)
T 3ibv_A 5 AQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVR----EWNNESNL 80 (980)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH----HCCTTTSH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcChhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH----hCChhhhH
Confidence 57899999765654 58999999999999999999999999999987443 78999999999999999 68999
Q ss_pred -hHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCCC--chhhHHHHhccccc
Q 002148 79 -AVRGLQDSLNTLLKKFH--KGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPE--FVPGFLELLTVLPE 153 (959)
Q Consensus 79 -~~~~lr~~Ll~~l~~~~--~~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~l~~~~~--~~~~~L~~L~~l~E 153 (959)
++..||+.+++++.+.+ .+|++||||+|.+++.++++.+|..||+ +++++++.+++++. ....+|++|..|+|
T Consensus 81 ~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~--~i~~l~~~~~~~~~~~~~~~~LriL~~i~E 158 (980)
T 3ibv_A 81 LELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWND--FFASLQGVIAASSQSEFSNFYLKVLLSIGD 158 (980)
T ss_dssp HHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTT--HHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCch--HHHHHHHHhcCCChhHHHHHHHHHHHHhHH
Confidence 99999999999999864 4689999999999999999999999999 99999998876432 34566777777779
Q ss_pred ccccccccCCh---hHHHHHHHHHHHh-----HHHHHHHHHHhhh--hhHhHHHHHHHHHHHHhccCCCCCcccccchhH
Q 002148 154 EVFNYKIAARP---ERRRQFEKELTSQ-----MEVALSTLTACLH--INELKEQVLEAFASWLRLKHRIPGSVLASHPLV 223 (959)
Q Consensus 154 E~~~~~~~l~~---~~r~~l~~~l~~~-----~~~vl~~l~~~l~--~~~~~~~~l~~~~sWi~~~~~~~~~~~~~~~ll 223 (959)
|+.+.++..+. .|+.++++.|..+ .+.+++++..+.+ ++++...+|+|+.+|+.| +|.+.+.+++++
T Consensus 159 Ev~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~w---i~~~~i~~~~ll 235 (980)
T 3ibv_A 159 EIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSW---ININLIVNEPCM 235 (980)
T ss_dssp HHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT---SCHHHHHCHHHH
T ss_pred HHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhh---cCHHhhhcchHH
Confidence 99876543332 4556788888766 6666777766654 346889999999999998 677777788999
Q ss_pred HHHHhcCCCCchHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhh---hcCCCHHHHHHHHHHHHHhh
Q 002148 224 LTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLT---DSSKDEEDVKAIARLFADMG 300 (959)
Q Consensus 224 ~~~~~~L~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~l~---~~~~d~e~~~~l~~l~~~~~ 300 (959)
+.+|+.|++++++++|++||++++++++.+ +++.++++.+ ++.+.+. .+++|.|..+++|++++++|
T Consensus 236 ~~l~~~L~~~~~r~~A~ecL~ei~~k~~~~-----~~k~~li~~l-----~L~~~~~~l~~~~~D~d~~~~la~L~~~~g 305 (980)
T 3ibv_A 236 NLLYSFLQIEELRCAACETMTEIVNKKMKP-----LEKLNLLNIL-----NLNLFFSKSQEQSTDPNFDEHVAKLINAQG 305 (980)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHHHHHSCCCH-----HHHHHHHHHH-----HHHHHHCC-----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHcCCCh-----hhHHHHHHHH-----hHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998742 3456666553 2333322 22678889999999999999
Q ss_pred hHHHHHHhcCC------------chHHHHHHHHHhhccCCCcchhhhhHHhHHHhHHHHhhcccccccCcccchHHHHHH
Q 002148 301 DSYVELIATGS------------DESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSR 368 (959)
Q Consensus 301 ~~~~~~l~~~~------------~~~~~~l~~ll~~~~~~~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (959)
+.+... .+.+ +.+..+++++|.|++|++++|+..+++||..+.+...+.+. . ..
T Consensus 306 e~l~~~-~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~------~-------~~ 371 (980)
T 3ibv_A 306 VELVAI-KSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESS------S-------KE 371 (980)
T ss_dssp HHHHHH-HTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTT------S-------CC
T ss_pred HHHHHH-ccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccc------c-------cc
Confidence 999988 6555 34668999999999999999999999999998876643110 0 01
Q ss_pred HHhhhHHHHHHHHHHHHhhccCCCCCCCCCh----hhhHHHHHHHHHhhHHHHHhhhccChHHHHHHHHHHHHHhhhhcC
Q 002148 369 RLQVFRSAYESLVSLVSFRVQYPQDYQDLSL----EDLKEFKHTRYAVADVLIDAASVLGGDATLKILYIKFVEGVACCG 444 (959)
Q Consensus 369 ~~~~~~~~~~~Ll~~l~~k~~~p~d~~~~~~----d~~~~f~~~R~~~~d~l~~~~~il~~~~~l~~l~~~l~~~~~~~~ 444 (959)
..+.++|++.+|++++++||+||+|. +|++ ||+++|.+||++++ ++.+++.++|++.++.++++.+...+.+..
T Consensus 372 ~~~~~~~~l~~Ll~~li~k~~yp~d~-~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l 449 (980)
T 3ibv_A 372 LSASLKEFLKSLLEAIIKKMKYDESQ-EWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAA 449 (980)
T ss_dssp CCHHHHHHHHHHHHHHHHTTSCCTTC-CCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHccCCCcc-ccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHh
Confidence 23578999999999999999999874 3443 77889999999999 899999999999999955555554433211
Q ss_pred --CCCCCcchhhHHHHHHHHhhcccCCc------cccchHHHhhhccCC-------CCcHHHHHHHHHHHHhhhhHHhhC
Q 002148 445 --NKHNEWRPAEAALFCIRAISTYVSVV------EAEVMPQVMALLPKL-------PQQPQLLQTVCLTIGAYSKWFDAA 509 (959)
Q Consensus 445 --~~~~~w~~~Ea~l~~l~~l~e~~~~~------~~~~l~~l~~~l~~l-------p~~~~v~~t~~~~ig~y~~~l~~~ 509 (959)
..+.+|+++||+||+++++||++... +++.+|++++++..+ +.||.||.++|+++|||++|+..|
T Consensus 450 ~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~ 529 (980)
T 3ibv_A 450 TLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYE 529 (980)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTC
T ss_pred cccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 11467999999999999999999852 345677777766443 469999999999999999999999
Q ss_pred CCChhhHHHHHHHHHh--ccCCCH-HHHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHhhccCCCCC-----------
Q 002148 510 SSDPSILASVLSILTS--GMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKV----------- 575 (959)
Q Consensus 510 p~~~~~l~~~l~~l~~--~l~~~~-~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~~~~~~~~~l----------- 575 (959)
|+ ++++++++++. |+++++ +|+.+||+||.+||++|+++|.||++.|++.+.+++.......-
T Consensus 530 ~~---~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~ 606 (980)
T 3ibv_A 530 SA---AIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNS 606 (980)
T ss_dssp CT---THHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHH
T ss_pred ch---hHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhh
Confidence 97 99999999999 998764 49999999999999999999999999999999998874210000
Q ss_pred -----CHhhHHHHHHHHHHHHhcC--ChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcC
Q 002148 576 -----SAEDSLHLVEALSMVITEL--PQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVN 648 (959)
Q Consensus 576 -----~~~~~~~l~eai~~vi~~~--p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 648 (959)
..+++.++|||+|.+++.. |.++...+++.++.|++++++++++....+.+ ... ++++.+..++.+.+++.
T Consensus 607 ~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~-~~~-~i~~~i~al~~lakgf~ 684 (980)
T 3ibv_A 607 SIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALE-NII-SVYCSLMAIGNFAKGFP 684 (980)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--C-HHH-HHHHHHHHHHHHHHTSC
T ss_pred hcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCcc-HHH-HHHHHHHHHHHHhccCC
Confidence 2457999999999999875 56777899999999999999999986543211 111 34445566666666654
Q ss_pred C----cccHHHHHHHHhHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCCcchhHhHH
Q 002148 649 H----PEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSS 724 (959)
Q Consensus 649 ~----~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~L~l~~ 724 (959)
. ++|+...+.++|+++..+++.|+.+..|+|++|.+++++++++|..+.|++|++++.++..|+..++++||++++
T Consensus 685 ~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~~~~~e~~~fL~l~~ 764 (980)
T 3ibv_A 685 ARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNSIDMNELVDVLSFIS 764 (980)
T ss_dssp SCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHHCCTTTHHHHHHHHH
T ss_pred cccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3 467888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCccchHHHHHHHHHHHHHHHHhhcCcc----cCCCCCCcHHHHHHHHHHHHhh-CCCcccCc---CChHHHH
Q 002148 725 EVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIE----EFTSRPDVADDCFLLASRCIRY-CPQLFIPS---SVFPSLV 796 (959)
Q Consensus 725 ~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~----~~~~~pDl~~~~f~l~~~~~~~-~p~~~l~s---~~l~~~~ 796 (959)
++|++||++ +.+.+.+++.+++.++++++++.. .+++..|+.++||.|+..++.+ .+.+++++ +.++.++
T Consensus 765 qli~~f~~~--~~~~l~~ll~~l~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v~~s~~n~~~l~~~l 842 (980)
T 3ibv_A 765 QLIHIYKDN--MMEITNRMLPTLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGSILFTEENQVYFDPLI 842 (980)
T ss_dssp HHHHHTTTT--SHHHHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCTGGGGSHHHHTTHHHHH
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCcchHHHHHHH
Confidence 999999998 999999999999999999998521 1234577999999999999995 57777763 4677777
Q ss_pred HHHHH-hccCCCchhHHHHHHHHHHhhc-CcCCCCchhhHHHHHHHHhhccHHHHHHHHHHccc-------CCCCCCccc
Q 002148 797 DCSMI-GITVQHREASNSILTFLSDIFD-LAKSCKGEEFLSVRDSVIIPRGASITRILIASLTG-------ALPSSRLET 867 (959)
Q Consensus 797 ~~~~~-~l~~~~~~~~~~~~~fl~~li~-~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~l~~-------~~~~~~~~~ 867 (959)
...+. +...+|+.+.|.|+.++++++. |+.+...++| ++|+.+ ++..++..... .-.+..+.+
T Consensus 843 ~~l~~~a~~~~d~~~~K~a~~~l~~~v~~~~~~~~~~gf----~~f~~~----~~~~~f~~p~~~~f~~~Daq~~~~~~e 914 (980)
T 3ibv_A 843 NSILHFANLVGEPATQKSSIALVSKMVSLWGGKDGIAGF----ENFTLS----LTPLCFEMPVNPNFNTRDGQSLVVLGE 914 (980)
T ss_dssp HHHHHHC-----CHHHHHHHHHHHHHHHC-------CCH----HHHHHH----HHHHHHHGGGC----------CHHHHH
T ss_pred HHHHHHhccCCChHHHHHHHHHHHHHHHHHCCCCcchHH----HHHHHH----HHHHHHHhhcCCCCChhhHHHHHHHHH
Confidence 76653 4557999999999999999997 5543223444 344332 33344444311 112235568
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCCchhhhHHHHHHHHHHHh
Q 002148 868 VTYALLALTRAYGVRSLEWAKESVSLIPLTALAEVERSRFLQALSEAASGVDVNAAMAPVEELSDVCRR 936 (959)
Q Consensus 868 ~a~il~~l~~~~~~~~~~wl~~~l~~~p~~~~~~~~~~~f~~~l~~~~~~~~~~~f~~~l~~F~~~~r~ 936 (959)
++.+++.++.+.|+++.+||.+. .+|+-+++++..+.|+++|.. .+.+.||+-++.|....|+
T Consensus 915 ~~~~~k~~~~~~g~~~~~~l~~~--~lp~~~~~~~~~~~~~~~l~~----~~~k~f~~~~~~~~~~~~~ 977 (980)
T 3ibv_A 915 LAGLQKIILEKLGDIYKSYLVTV--YFPTVNFPDVMASEYLQALSN----LDSRSFKQFFQKFIQALKS 977 (980)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT--TTTC----CCHHHHHHHC--------------------CHHHHC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHh--cCCcCCCCHHHHHHHHHHHhc----cchhhHHHHHHHHHHHhhc
Confidence 99999999999999999999874 478888999999999999943 4678999999999877665
No 3
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=100.00 E-value=9.4e-88 Score=851.50 Aligned_cols=887 Identities=21% Similarity=0.379 Sum_probs=760.1
Q ss_pred hHHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcChhhHHHHHHHhccCCCChhHHHHHHHHHHhhhhcCCCCCChhhHHH
Q 002148 3 LQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRG 82 (959)
Q Consensus 3 ~~~~v~~av~~l~~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~~~faa~~L~~ki~~~w~~l~~~~~~~ 82 (959)
..++|.++++++|+++|++.|++|+++|++||++|++|.+|.+||.+ +.+.++|||||++|+++|+++|+.++++++..
T Consensus 22 ~~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~p~~~~~~~~lL~~-~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ 100 (963)
T 2x19_B 22 TVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQP-DKVPEIQYFGASALHIKISRYWSDIPTDQYES 100 (963)
T ss_dssp CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSTTHHHHHHHHTST-TSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHH
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHhCHHhCCHHHHHH
Confidence 36789999999988889999999999999999999999999999985 67889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCC------CCCchhhHHHHhcccccccc
Q 002148 83 LQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNS------HPEFVPGFLELLTVLPEEVF 156 (959)
Q Consensus 83 lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~l~~------~~~~~~~~L~~L~~l~EE~~ 156 (959)
+|+.|++++.++..+++.||+|+|.+++.++.+.+|+.||+ +++++++.+++ ++..+..++.+|+.++||+.
T Consensus 101 ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~--~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~ 178 (963)
T 2x19_B 101 LKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPC--AVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQ 178 (963)
T ss_dssp HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTT--HHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccch--HHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHh
Confidence 99999999998765689999999999999999999999998 99999998875 22357899999999999997
Q ss_pred cccccCChhHHHHHHHHHHHhHHHHHHHHHHhhhhh----HhHHHHHHHHHHHHhccCCCCCcccccchhHHHHHhcCCC
Q 002148 157 NYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN----ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHS 232 (959)
Q Consensus 157 ~~~~~l~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~----~~~~~~l~~~~sWi~~~~~~~~~~~~~~~ll~~~~~~L~~ 232 (959)
+.+. +..+|..+++.+..+++.|++++..+++.. .+...+++|+.+|+..+ .+ ....+++++.+++.+.+
T Consensus 179 ~~~~--~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~--~~--~~~~~~ll~~l~~~l~~ 252 (963)
T 2x19_B 179 TSRL--PQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLE--VP--LQDCEALIQAAFAALQD 252 (963)
T ss_dssp TCCC-----------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSS--CC--GGGTHHHHHHHHHHTTS
T ss_pred cccC--cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCC--CC--cccchHHHHHHHHHhCC
Confidence 7654 567778888888889999999999888653 48889999999999853 32 12457899999999999
Q ss_pred CchHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhh--hcCCCHHHHHHHHHHHHHhhhHHHHHHhcC
Q 002148 233 EILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLT--DSSKDEEDVKAIARLFADMGDSYVELIATG 310 (959)
Q Consensus 233 ~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~l~--~~~~d~e~~~~l~~l~~~~~~~~~~~l~~~ 310 (959)
++++++|++|+.+++...... ...+.+..+++.++++.+.+. ...+|.+..+.+|++++++++.+...+.++
T Consensus 253 ~~~~~~a~~~l~~i~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~ 326 (963)
T 2x19_B 253 SELFDSSVEAIVNAISQPDAQ------RYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQ 326 (963)
T ss_dssp TTTHHHHHHHHHHHHTCTTGG------GCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHcccccc------cCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcC
Confidence 999999999999999864321 234566777777665543332 124567888999999999999999888743
Q ss_pred ---CchHHHHHHHHHhhccCC-----CcchhhhhHHhHHHhHHHHhhcccccccCcccchHHHHHHHHhhhHHHHHHHHH
Q 002148 311 ---SDESMLIVHALLEVASHP-----EYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVS 382 (959)
Q Consensus 311 ---~~~~~~~l~~ll~~~~~~-----~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~ 382 (959)
++.+..++++++.++.+| +++++..+++||+.+.+.....+ ++ .+......++|++.++++
T Consensus 327 ~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~------~~-----~~~~~~~~~~~~l~~l~~ 395 (963)
T 2x19_B 327 VEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFE------AE-----KQAVYQQVYRPVYFQLVD 395 (963)
T ss_dssp GGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSC------HH-----HHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhh------hh-----hhHHHHHHHHHHHHHHHH
Confidence 356778999999999973 67899999999999998653210 00 012356688999999999
Q ss_pred HHHhhccCCCC--CCCCChhhhHHHHHHHHHhhHHHHHhhhccChHHHHHHHHHHHHHhhhhcCCCCCCcchhhHHHHHH
Q 002148 383 LVSFRVQYPQD--YQDLSLEDLKEFKHTRYAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCI 460 (959)
Q Consensus 383 ~l~~k~~~p~d--~~~~~~d~~~~f~~~R~~~~d~l~~~~~il~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l 460 (959)
+++.+|.||+| +++|++||.++|++||++++|++.+++.+.| +.+++.+.+.+.+.+.+..+ +.+|+.+||++|++
T Consensus 396 ~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~-~~~l~~~~~~l~~~l~~~~~-~~~w~~~eaal~al 473 (963)
T 2x19_B 396 VLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLG-AELLSNLYDKLGRLLTSSEE-PYSWQHTEALLYGF 473 (963)
T ss_dssp HHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTCCC-SCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHcc-HHHHHHHHHHHHHHHHhcCC-CCchHHHHHHHHHH
Confidence 99999999986 3468888888999999999999999999998 56888888888877643222 57899999999999
Q ss_pred HHhhcccCCccccchHHHhhhccCCC-CcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccCCCHHHHHHHHH
Q 002148 461 RAISTYVSVVEAEVMPQVMALLPKLP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAAL 539 (959)
Q Consensus 461 ~~l~e~~~~~~~~~l~~l~~~l~~lp-~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~~v~~~A~~ 539 (959)
+++++++..+.++.++++++.+.+++ +||.||.++++++|+|++|+..||+ ++++++++++.+++++. |+.+||+
T Consensus 474 ~~i~~~~~~~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~---~l~~vl~~l~~~l~~~~-V~~~A~~ 549 (963)
T 2x19_B 474 QSIAETIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV---MINSVLPLVLHALGNPE-LSVSSVS 549 (963)
T ss_dssp HHHTTSCCSSCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH---HHTTTHHHHHHHTTCGG-GHHHHHH
T ss_pred HHHHhhcCchhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH---HHHHHHHHHHHHhCCch-HHHHHHH
Confidence 99999998877788999999888876 5899999999999999999999985 89999999999998866 9999999
Q ss_pred HHHHHHHHhhhhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHh
Q 002148 540 AFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIIN 619 (959)
Q Consensus 540 al~~lc~~c~~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~ 619 (959)
||.+||++|+..+.||++.+++.+.++++.+ .++.+++..+++++|.++.+.|.++..+++..++.|+.+.|+++.+
T Consensus 550 al~~l~~~~~~~l~p~~~~il~~l~~~l~~~---~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 626 (963)
T 2x19_B 550 TLKKICRECKYDLPPYAANIVAVSQDVLMKQ---IHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAE 626 (963)
T ss_dssp HHHHHHHHTGGGCTTTHHHHHHHHHHHHHTT---CSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhccC---CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999988753 3678899999999999999998677789999999999999999865
Q ss_pred cCCCcccccCchhhhHHHHHHHHHhhhcCC--------------------cccHHHHHHHHhHHHHHHHHhhcccHHHHH
Q 002148 620 QGPEILQKKHPRDLTVHIDRFAYIFRYVNH--------------------PEAVADAIQRLWPIFKAIFDIRAWDMRTME 679 (959)
Q Consensus 620 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--------------------~~~~~~~~~~~~~~l~~il~~~~~~~~i~e 679 (959)
+.. + ++........+++|+.+++++.. ++|+..+++.+||++..+++.+..+.++.|
T Consensus 627 ~~~-~--~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e 703 (963)
T 2x19_B 627 EIP-N--PSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVE 703 (963)
T ss_dssp SCS-C--HHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCC-C--HHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHH
Confidence 432 1 11223455678999999998863 256888999999999999999998899999
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCCcchhHhHHHHHHHhCCCccchHHHHHHHHHHHHHHHHhhcCcc
Q 002148 680 SLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIE 759 (959)
Q Consensus 680 ~~~~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~ 759 (959)
.+|+++++++.++|+.+.|++|++++.+...|...+.++++++++.++..||.++.+.+.+.+++..++.+++++++ .
T Consensus 704 ~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~--~ 781 (963)
T 2x19_B 704 AVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQ--Q 781 (963)
T ss_dssp HHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHH--H
T ss_pred HHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHh--h
Confidence 99999999999999999999999999999999998899999999999999998776778888899999999998887 4
Q ss_pred cCCCCCCcHHHHHHHHHHHHhhCCCcccCcCC-hHHHHHHHHHhccCCCchhHHHHHHHHHHhhcCcCCCCchhhHHHHH
Q 002148 760 EFTSRPDVADDCFLLASRCIRYCPQLFIPSSV-FPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRD 838 (959)
Q Consensus 760 ~~~~~pDl~~~~f~l~~~~~~~~p~~~l~s~~-l~~~~~~~~~~l~~~~~~~~~~~~~fl~~li~~~~~~~~~~~~~~~~ 838 (959)
++.++||++++||.|+.++++++|..+++++. +..++++++.+++.+|+++.+++++||.++++.... .. .++
T Consensus 782 ~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~---~~---~~~ 855 (963)
T 2x19_B 782 GPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGE---VE---SVG 855 (963)
T ss_dssp CTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTS---SC---HHH
T ss_pred CcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCC---hH---HHH
Confidence 56789999999999999999999999988777 999999999999999999999999999999975431 11 267
Q ss_pred HHHhhccHHHHHHHHHHcccCCCCCCcccHHHHHHHHHHHhhHHHHHHHHHHHh--hCCCCCCCHHHHHHHHHHHHHHhc
Q 002148 839 SVIIPRGASITRILIASLTGALPSSRLETVTYALLALTRAYGVRSLEWAKESVS--LIPLTALAEVERSRFLQALSEAAS 916 (959)
Q Consensus 839 ~~~~~~g~~lv~~ll~~l~~~~~~~~~~~~a~il~~l~~~~~~~~~~wl~~~l~--~~p~~~~~~~~~~~f~~~l~~~~~ 916 (959)
+++.++|+.|+..++.++++..|++.+++++++|+.++.++|+.+.+|+.+++. .+|+.+++++++++|++++++.+
T Consensus 856 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~il~~l~~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~f~~~l~~~~- 934 (963)
T 2x19_B 856 KVVQEDGRMLLIAVLEAIGGQASRSLMDCFADILFALNKHCFSLLSMWIKEALQPPGFPSARLSPEQKDTFSQQILRER- 934 (963)
T ss_dssp HHTTTSHHHHHHHHHHHHTTTSCGGGHHHHHHHHHHHHHHSHHHHHHHHHHHTCSTTSSCTTCCHHHHHHHHHHHTCSS-
T ss_pred HHHHHHHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHHHChHHHHHHHHHHhcccCCCCCcCCHHHHHHHHHHHHHHH-
Confidence 888999999999999999999999999999999999999999999999999984 79988999999999999997643
Q ss_pred CCCchhhhHHHHHHHHHHHhh
Q 002148 917 GVDVNAAMAPVEELSDVCRRN 937 (959)
Q Consensus 917 ~~~~~~f~~~l~~F~~~~r~~ 937 (959)
.++|+||+.++||+..||+.
T Consensus 935 -~~~~~f~~~l~~F~~~~r~~ 954 (963)
T 2x19_B 935 -VNKRRVKEMVKEFTLLCRGL 954 (963)
T ss_dssp -CCHHHHHHHHHHHHHHHHC-
T ss_pred -cCcHHHHHHHHHHHHHHcCc
Confidence 47999999999999999984
No 4
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=100.00 E-value=2.4e-89 Score=843.20 Aligned_cols=878 Identities=14% Similarity=0.198 Sum_probs=728.1
Q ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcChhhHHHHHHHhccCCCChhHHHHHHHHHHhhhhcCCCCCChhhHHHH
Q 002148 4 QNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGL 83 (959)
Q Consensus 4 ~~~v~~av~~l~~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~~~faa~~L~~ki~~~w~~l~~~~~~~l 83 (959)
++.+++||.++|+++++ .|++|++||++||++|++|..|.++|.+ +.++++|||||++|+++|+++|+.++++++..+
T Consensus 15 v~~Le~av~~ly~p~~~-~r~~A~~~L~~~q~sp~aw~~~~~iL~~-s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~~I 92 (1023)
T 4hat_C 15 IALLDQVVSTFYQGSGV-QQKQAQEILTKFQDNPDAWQKADQILQF-STNPQSKFIALSILDKLITRKWKLLPNDHRIGI 92 (1023)
T ss_dssp HHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHCTTGGGGHHHHHHH-CCCHHHHHHHHHHHHHHHHHHGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHhCCChH-HHHHHHHHHHHHHcCccHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHH
Confidence 56899999999987655 8999999999999999999999999976 678899999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCC------ChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCCCchhhHHHHhccccccccc
Q 002148 84 QDSLNTLLKKFHKG------PPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFN 157 (959)
Q Consensus 84 r~~Ll~~l~~~~~~------~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~l~~~~~~~~~~L~~L~~l~EE~~~ 157 (959)
|+.+++++.+++.+ ++++++|+|.+++.++++.+|+.||+ +++++++.+++++..+.++|.+|+.|+||+.+
T Consensus 93 r~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~--~l~dL~~~l~~~~~~~~~~L~iL~~L~EEV~~ 170 (1023)
T 4hat_C 93 RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPE--FIPELIGSSSSSVNVCENNMIVLKLLSEEVFD 170 (1023)
T ss_dssp HHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTT--HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchH--HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999987533 57899999999999999999999999 99999999987776788999999999999876
Q ss_pred c-cccCChhHHHHHHHHHHHhHHHHHHHHHHhhhh---hHhHHHHHHHHHHHHhccCCCCCcccccchhHHHHH-hcCCC
Q 002148 158 Y-KIAARPERRRQFEKELTSQMEVALSTLTACLHI---NELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTAL-SSLHS 232 (959)
Q Consensus 158 ~-~~~l~~~~r~~l~~~l~~~~~~vl~~l~~~l~~---~~~~~~~l~~~~sWi~~~~~~~~~~~~~~~ll~~~~-~~L~~ 232 (959)
. +..++..||..+++.|..+++.|++++..+++. +++...+|+|+.+|+.| +|.+.+.++++++.++ ..|++
T Consensus 171 ~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~W---I~i~~i~~~~ll~~l~~~~L~~ 247 (1023)
T 4hat_C 171 FSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFMTS 247 (1023)
T ss_dssp SCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHHHS
T ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh---CCHHHhcchhHHHHHHHHHcCC
Confidence 3 234668899999999999999999999999875 36888999999999998 7777778899999999 99999
Q ss_pred CchHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHH------------hhHHHhhhcC-CCHHHHHHHHHHHHHh
Q 002148 233 EILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIM------------SLKAHLTDSS-KDEEDVKAIARLFADM 299 (959)
Q Consensus 233 ~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~------------~l~~~l~~~~-~d~e~~~~l~~l~~~~ 299 (959)
++++++|++||++++++..+. +.....+.+..+++.++ ++.+++..++ +|+++++++|++++++
T Consensus 248 ~~~r~~A~ecL~eIv~~~~~~---~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~ 324 (1023)
T 4hat_C 248 PDTRAITLKCLTEVSNLKIPQ---DNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTY 324 (1023)
T ss_dssp HHHHHHHHHHHHHHHTSCCCS---SCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccccCC---chHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHH
Confidence 999999999999999854211 10011123333333322 3445555443 4668899999999999
Q ss_pred hhHHHHHHhcCCc---hHHHHHHHHHhhccCCCcchhhhhHHhHHHhHHHHhhcccccccCcccchHHHHHHHHhhhHHH
Q 002148 300 GDSYVELIATGSD---ESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSA 376 (959)
Q Consensus 300 ~~~~~~~l~~~~~---~~~~~l~~ll~~~~~~~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (959)
|+.+..++.+++. .+...+++|+.++.++|.+++..||+||+.+.+.++.. +.+...|+|+
T Consensus 325 ~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e----------------~~~~~~~~~~ 388 (1023)
T 4hat_C 325 LARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYE----------------PLKKHIYEEI 388 (1023)
T ss_dssp HHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTS----------------TTTGGGGHHH
T ss_pred HHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhc----------------hHHHHHHHHH
Confidence 9999998865532 12344669999999999999999999999999987642 0135689999
Q ss_pred HHHHHHHHHhhccCCCC-------CCCC------ChhhhHHHHHHHHHhhHHHHHhhhccChHHHHHHHHHHHHHhhhhc
Q 002148 377 YESLVSLVSFRVQYPQD-------YQDL------SLEDLKEFKHTRYAVADVLIDAASVLGGDATLKILYIKFVEGVACC 443 (959)
Q Consensus 377 ~~~Ll~~l~~k~~~p~d-------~~~~------~~d~~~~f~~~R~~~~d~l~~~~~il~~~~~l~~l~~~l~~~~~~~ 443 (959)
|.+|+.++++||+||++ .++| |.|+.+.|+.|| |++.+++.+.|. .+++++.+.+.+.+..
T Consensus 389 ~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~R----d~L~~l~~l~~~-~~~~~~~~~l~~~l~~- 462 (1023)
T 4hat_C 389 CSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSER----EVLVYLTHLNVI-DTEEIMISKLARQIDG- 462 (1023)
T ss_dssp HHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHH----HHHHHHHHHCHH-HHHHHHHHHHHHHHSS-
T ss_pred HHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHH----HHHHHHhccCHH-HHHHHHHHHHHHHhcC-
Confidence 99999999999999983 2345 667889999998 889999999885 6999999999887532
Q ss_pred CCCCCCcchhhHHHHHHHHhhcccCCc-cccchHHHhhhccCCCC-------cHHHHHHHHHHHHhhhhHHhhCCCChhh
Q 002148 444 GNKHNEWRPAEAALFCIRAISTYVSVV-EAEVMPQVMALLPKLPQ-------QPQLLQTVCLTIGAYSKWFDAASSDPSI 515 (959)
Q Consensus 444 ~~~~~~w~~~Ea~l~~l~~l~e~~~~~-~~~~l~~l~~~l~~lp~-------~~~v~~t~~~~ig~y~~~l~~~p~~~~~ 515 (959)
+ +++|+.+||++|++|++++++.++ +++++++++..|.++++ ++.++.|+|+++|||++|+..||+ +
T Consensus 463 -~-~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~---~ 537 (1023)
T 4hat_C 463 -S-EWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN---F 537 (1023)
T ss_dssp -T-TCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHH---H
T ss_pred -C-CCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHH---H
Confidence 2 478999999999999999999875 56889999998777653 356888999999999999999997 9
Q ss_pred HHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhhhhh--------CCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHH
Q 002148 516 LASVLSILTSGMSTS-EDTAAAAALAFRHICDDCRKKLC--------GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEA 586 (959)
Q Consensus 516 l~~~l~~l~~~l~~~-~~v~~~A~~al~~lc~~c~~~L~--------~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~ea 586 (959)
|++++++++.+++++ ++++.+||.||.+||++|+.++. ||++.|++.+.++... ++.+++..+|||
T Consensus 538 L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~-----l~~~~~~~lyea 612 (1023)
T 4hat_C 538 LRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTAD-----LQPQQVHTFYKA 612 (1023)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTT-----SCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHh-----CCHHHHHHHHHH
Confidence 999999999999765 34999999999999999999884 7999999999998753 789999999999
Q ss_pred HHHHHhcCChHH-HHHHHHHhhhhhHHHHHHHHhcCCCccc----ccCchhhhHHHHHHHHHhhhcCCcccHHHHHHHHh
Q 002148 587 LSMVITELPQVD-AKKALEMLCLPVVTPLQEIINQGPEILQ----KKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLW 661 (959)
Q Consensus 587 i~~vi~~~p~~~-~~~~l~~ll~p~~~~l~~~~~~~~~~~~----~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 661 (959)
+|.+++++|+++ ...+++.++.|+.+.|++++++...+++ .+..+.+...+++++.+.++++ +++.+.+..+|
T Consensus 613 i~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg--~~f~~~~~~i~ 690 (1023)
T 4hat_C 613 CGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMG--ADFYPQLGHIY 690 (1023)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHG--GGGHHHHHHHH
T ss_pred HHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhc--HHHHHHHHHHH
Confidence 999999999876 5589999999999999999864321111 0113345556778777777665 56778888888
Q ss_pred HHHHHHHHhhcccH--------HH-----HHHHHHHHHHH-HHHh----h------hhhhhhHHHHHHHHHHHHhhc---
Q 002148 662 PIFKAIFDIRAWDM--------RT-----MESLCRACKYA-VRTS----K------RFMGITIGAILEEIQGLYQQH--- 714 (959)
Q Consensus 662 ~~l~~il~~~~~~~--------~i-----~e~~~~~l~~~-~~~~----~------~~~~~~l~~l~~~l~~~~~~~--- 714 (959)
|.+..+.+.+.... .+ ..+.+|++++. ++-+ + .....++|++++.++.+|..+
T Consensus 691 ~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~~~~~~l~~~vl~dY~~~~~~ 770 (1023)
T 4hat_C 691 YNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPD 770 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSCGG
T ss_pred HHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHHhCChh
Confidence 88877766653211 00 22456666542 2211 1 124468999999999999986
Q ss_pred -CCcchhHhHHHHHHHhCCCccchHHHHHHHHHHHHHHHHhhcCcccCCCCCCcHHHHHHHHHHHHhhCCCcccCc--CC
Q 002148 715 -QQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPS--SV 791 (959)
Q Consensus 715 -~~~~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pDl~~~~f~l~~~~~~~~p~~~l~s--~~ 791 (959)
+.+++|++.+.+|+++|.. +.+.+..+++.++.+|++|++ .++.++||.+.+||+|+.+++.+||..++.. +.
T Consensus 771 ~r~~~vL~l~s~iv~~~~~~--~~~~~~~il~~vf~~Tl~mi~--~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~ 846 (1023)
T 4hat_C 771 ARDAEVLNCMTTVVEKVGHM--IPQGVILILQSVFECTLDMIN--KDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAA 846 (1023)
T ss_dssp GCCHHHHHHHHHHHHHHGGG--CHHHHHHHHHHHHHHHHHHHS--SCSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHH
T ss_pred hccHHHHHHHHHHHHHHHHh--hhhhhHHHHHHHHHHHHHHHh--cccccChHHHHHHHHHHHHHHHHChHHHHcCCHHH
Confidence 5699999999999999975 889999999999999999999 6899999999999999999999999988764 48
Q ss_pred hHHHHHHHHHhccCCCchhHHHHHHHHHHhhcCcCCCCchhhHHHHHHHHhhccHHHHHHHHHHcccCCCCCCcccHHHH
Q 002148 792 FPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETVTYA 871 (959)
Q Consensus 792 l~~~~~~~~~~l~~~~~~~~~~~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~l~~~~~~~~~~~~a~i 871 (959)
+..+++++++|+++.|+++..++++|+.++++.....+.++ ..++|+..++..++..+|..+.+..+.+.+...+.+
T Consensus 847 ~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~~~~~---~~~~f~~~~~~~~~~~~~~v~td~~h~~~f~~~~~~ 923 (1023)
T 4hat_C 847 FKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNVP---FANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQALL 923 (1023)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHCSSH---HHHHHHHHHHHHHHHHHHHHHHSSSCGGGHHHHHHH
T ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCChH---HHHHHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHH
Confidence 99999999999999999999999999999997643211223 367899999999999999999999999999999999
Q ss_pred HHHHHHHh---------------------hHHHHHHHHHHHh-hCCCCCCCHHHHHHHHHHHHHHhcCCCchhhhHHHHH
Q 002148 872 LLALTRAY---------------------GVRSLEWAKESVS-LIPLTALAEVERSRFLQALSEAASGVDVNAAMAPVEE 929 (959)
Q Consensus 872 l~~l~~~~---------------------~~~~~~wl~~~l~-~~p~~~~~~~~~~~f~~~l~~~~~~~~~~~f~~~l~~ 929 (959)
|..++..- ...+++|+.+.+. .|| ++++++.+.|++.++.. .++..+||..+||
T Consensus 924 l~~l~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~fp--~~~~~qi~~fv~~l~~~--~~~~~~f~~~lrd 999 (1023)
T 4hat_C 924 LMKLISLVYDNKISVPLYQEAEVPQGTSNQVYLSQYLANMLSNAFP--HLTSEQIASFLSALTKQ--CKDLVVFKGTLRD 999 (1023)
T ss_dssp HHHHHHHHHTTCCCSCSSCTTSSCTTCCHHHHHHHHHHHHHHHHCT--TSCHHHHHHHHHHHHHT--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcccccCCccccCCCCchHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHc--cCCHHHHHHHHHH
Confidence 99987642 2357889988884 899 78999999999999985 3689999999999
Q ss_pred HHHHHHh
Q 002148 930 LSDVCRR 936 (959)
Q Consensus 930 F~~~~r~ 936 (959)
|....|.
T Consensus 1000 fli~~ke 1006 (1023)
T 4hat_C 1000 FLVQIKE 1006 (1023)
T ss_dssp HHHHTTS
T ss_pred HhHHhHh
Confidence 9988775
No 5
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=100.00 E-value=5.4e-89 Score=832.39 Aligned_cols=910 Identities=16% Similarity=0.244 Sum_probs=716.8
Q ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcChhhHHHHHHHhccCCCChhHHHHHHHHHHhhhhcCCCCCChhhHHHH
Q 002148 4 QNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGL 83 (959)
Q Consensus 4 ~~~v~~av~~l~~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~~~faa~~L~~ki~~~w~~l~~~~~~~l 83 (959)
++.++++|.++|++ +++.|++|++||++||++|++|+.|.++|.+ +.++++|||||++|+++|+++|+.++++++..|
T Consensus 27 v~~Le~lv~~ly~p-~~~~r~qA~~~L~q~q~sp~aw~~~~~iL~~-s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~L 104 (1073)
T 3gjx_A 27 INLLDNVVNCLYHG-EGAQQRMAQEVLTHLKEHPDAWTRVDTILEF-SQNMNTKYYGLQILENVIKTRWKILPRNQCEGI 104 (1073)
T ss_dssp HHHHHHHHHTTTCS-SHHHHHHHHHHHHTSSCCSCHHHHHTCC----CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCchHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHH
Confidence 46799999999965 7889999999999999999999999999976 678899999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCC------ChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCCCchhhHHHHhccccccccc
Q 002148 84 QDSLNTLLKKFHKG------PPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFN 157 (959)
Q Consensus 84 r~~Ll~~l~~~~~~------~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~l~~~~~~~~~~L~~L~~l~EE~~~ 157 (959)
|+.+++++.+++.+ ++.+++|+|.+++.++++.+|+.||+ +++++++.+++++..+.++|++|+.|+||+.+
T Consensus 105 R~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~--fi~dLv~~~~~~~~~~~~~L~IL~~L~EEV~d 182 (1073)
T 3gjx_A 105 KKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPT--FISDIVGASRTSESLCQNNMVILKLLSEEVFD 182 (1073)
T ss_dssp HHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTT--HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccH--HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999986433 36788999999999999999999999 99999998876666788999999999999876
Q ss_pred c-cccCChhHHHHHHHHHHHhHHHHHHHHHHhhhh---hHhHHHHHHHHHHHHhccCCCCCcccccchhHHHH-HhcCCC
Q 002148 158 Y-KIAARPERRRQFEKELTSQMEVALSTLTACLHI---NELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTA-LSSLHS 232 (959)
Q Consensus 158 ~-~~~l~~~~r~~l~~~l~~~~~~vl~~l~~~l~~---~~~~~~~l~~~~sWi~~~~~~~~~~~~~~~ll~~~-~~~L~~ 232 (959)
. +..++..||.++++.|...++.+++++..+++. +++...+++|+.+|+.| ++.+.+.++++++.+ +..|++
T Consensus 183 ~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sW---I~i~~i~~~~ll~~L~~~~L~~ 259 (1073)
T 3gjx_A 183 FSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNW---IPLGYIFETKLISTLIYKFLNV 259 (1073)
T ss_dssp SHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHHHTSSS
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHh---cCHHHhccchHHHHHHHHhcCC
Confidence 5 234667889999999999999999999998865 35677788888888887 566677889999988 799999
Q ss_pred CchHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHh-----------hHHHhhhc-CCCHHHHHHHHHHHHHhh
Q 002148 233 EILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMS-----------LKAHLTDS-SKDEEDVKAIARLFADMG 300 (959)
Q Consensus 233 ~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~-----------l~~~l~~~-~~d~e~~~~l~~l~~~~~ 300 (959)
++++++|++||++|+++... +..+.+..++..++. +.+.+..+ ++|.++++++|++|+++|
T Consensus 260 ~~~r~aA~dcL~eIv~k~~~-------~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~ 332 (1073)
T 3gjx_A 260 PMFRNVSLKCLTEIAGVSVS-------QYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFL 332 (1073)
T ss_dssp HHHHHHHHHHHHHHHHSCSG-------GGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcccc-------chHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHH
Confidence 99999999999999987421 223344445544432 23333333 345588999999999999
Q ss_pred hHHHHHHhcCCc---hHHHHHHHHHhhccCCCcchhhhhHHhHHHhHHHHhhcccccccCccc----chHHHHHHHHhhh
Q 002148 301 DSYVELIATGSD---ESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEA----SAEAERSRRLQVF 373 (959)
Q Consensus 301 ~~~~~~l~~~~~---~~~~~l~~ll~~~~~~~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 373 (959)
++|...+.++|+ .+...+++++.|+.++|.++...||+||+.|.+.+++...+. .++.| +...+...+...|
T Consensus 333 e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~-~~~~~~~~~~~~~~~~~~~~~y 411 (1073)
T 3gjx_A 333 KEHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFS-TSASPLLSGSQHFDIPPRRQLY 411 (1073)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSC-CCCSSCTTSSCCSCSCHHHHTT
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhcccc-ccccccccccccccchhHHHHH
Confidence 999999987754 345678889999999999999999999999999998643211 00000 0000012356789
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCChhhhHHHHHHH---------HHhhHHHHHhhhccChHHHHHHHHHHHHHhhhhcC
Q 002148 374 RSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTR---------YAVADVLIDAASVLGGDATLKILYIKFVEGVACCG 444 (959)
Q Consensus 374 ~~~~~~Ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R---------~~~~d~l~~~~~il~~~~~l~~l~~~l~~~~~~~~ 444 (959)
+|+|.+|+.+++.||.||+|.-..++|+.|.|++|| +.++|++.+++.+ +++.++.++.+.+.+.+. +
T Consensus 412 ~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l-~~~~~~~i~~~~l~~~~~--~ 488 (1073)
T 3gjx_A 412 LTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHL-DYVDTEIIMTKKLQNQVN--G 488 (1073)
T ss_dssp HHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHT--S
T ss_pred HHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhc--C
Confidence 999999999999999999863221222223333333 3455666555544 457899999999987643 2
Q ss_pred CCCCCcchhhHHHHHHHHhhcccCCc-cccchHHHhhhccCCCCc-------HHHHHHHHHHHHhhhhHHhhCCCChhhH
Q 002148 445 NKHNEWRPAEAALFCIRAISTYVSVV-EAEVMPQVMALLPKLPQQ-------PQLLQTVCLTIGAYSKWFDAASSDPSIL 516 (959)
Q Consensus 445 ~~~~~w~~~Ea~l~~l~~l~e~~~~~-~~~~l~~l~~~l~~lp~~-------~~v~~t~~~~ig~y~~~l~~~p~~~~~l 516 (959)
+ .++|+.+||++|++|++|+.+.++ ++++++++++.|.++|+| +.++.++|+++|||++|+..||+ +|
T Consensus 489 ~-~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~---~L 564 (1073)
T 3gjx_A 489 T-EWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWK---FL 564 (1073)
T ss_dssp C-CCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHH---HH
T ss_pred C-CCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHH---HH
Confidence 2 589999999999999999888753 678999999999887643 35788899999999999999997 99
Q ss_pred HHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhhh--------CCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHH
Q 002148 517 ASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLC--------GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEAL 587 (959)
Q Consensus 517 ~~~l~~l~~~l~~~~-~v~~~A~~al~~lc~~c~~~L~--------~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai 587 (959)
++++++++.++++++ +|+.+||.||.+||++|+.+++ ||++.|++.+.++.. +++.++...+|+|+
T Consensus 565 ~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~-----~l~~~~~~~lyeav 639 (1073)
T 3gjx_A 565 KTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIIC-----DLQPQQVHTFYEAV 639 (1073)
T ss_dssp HHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHT-----TCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHH-----hcCHHHHHHHHHHH
Confidence 999999999998652 4999999999999999999874 689999999888875 48899999999999
Q ss_pred HHHHhcCChHH-HHHHHHHhhhhhHHHHHHHHhcCCCccc--cc--CchhhhHHHHHHHHHhhhcCCcccHHHHHHHHhH
Q 002148 588 SMVITELPQVD-AKKALEMLCLPVVTPLQEIINQGPEILQ--KK--HPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWP 662 (959)
Q Consensus 588 ~~vi~~~p~~~-~~~~l~~ll~p~~~~l~~~~~~~~~~~~--~~--~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 662 (959)
|.+++++|++. ...+++.++.|..++|++++++...+.+ .+ ..+.+...+++.+.+..+++ +++.+.+..+||
T Consensus 640 ~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g--~~f~~~~~~i~~ 717 (1073)
T 3gjx_A 640 GYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVG--HPFVIQLGRIYL 717 (1073)
T ss_dssp HHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHH
T ss_pred HHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcc--hhHHHHHHHHHH
Confidence 99999999877 4689999999999999999975332111 00 11233344455554444443 667777778887
Q ss_pred HHHHHHHhhcccH-------------HHHHHHHHHHHHHH-HHh----hh------hhhhhHHHHHHHHHHHHhh----c
Q 002148 663 IFKAIFDIRAWDM-------------RTMESLCRACKYAV-RTS----KR------FMGITIGAILEEIQGLYQQ----H 714 (959)
Q Consensus 663 ~l~~il~~~~~~~-------------~i~e~~~~~l~~~~-~~~----~~------~~~~~l~~l~~~l~~~~~~----~ 714 (959)
-+..+.+.|.+.. ....+.||++|+.+ +-+ +. ....++|++++.++.+|.. .
T Consensus 718 ~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~~~~p~~ 797 (1073)
T 3gjx_A 718 DMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAA 797 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHHHSCGGG
T ss_pred HHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHhcCCccc
Confidence 6665554432211 12346778877533 222 21 2457889999999999997 4
Q ss_pred CCcchhHhHHHHHHHhCCCccchHHHHHHHHHHHHHHHHhhcCcccCCCCCCcHHHHHHHHHHHHhhCCCcccC--cCCh
Q 002148 715 QQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIP--SSVF 792 (959)
Q Consensus 715 ~~~~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pDl~~~~f~l~~~~~~~~p~~~l~--s~~l 792 (959)
+++++|++++.+|+++|.. +.+.+..+++.++.+|++|++ .++.++||.+.+||+|+.++..+|+..+++ ++.+
T Consensus 798 r~~evL~l~s~iv~k~~~~--~~~~~~~il~~vf~~Tl~mi~--~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~ 873 (1073)
T 3gjx_A 798 REPEVLSTMAIIVNKLGGH--ITAEIPQIFDAVFECTLNMIN--KDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQF 873 (1073)
T ss_dssp CCTHHHHHHHHHHHHHGGG--TGGGHHHHHHHHHHHHHHHHS--SCSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHHHH
T ss_pred ccHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHHHHHh--CCcccCcHHHHHHHHHHHHHHHHHhHHHHcCCHHHH
Confidence 8899999999999999986 778899999999999999998 689999999999999999999999998886 4568
Q ss_pred HHHHHHHHHhccCCCchhHHHHHHHHHHhhcCcCCCCchhhHHHHHHHHhhccHHHHHHHHHHcccCCCCCCcccHHHHH
Q 002148 793 PSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETVTYAL 872 (959)
Q Consensus 793 ~~~~~~~~~~l~~~~~~~~~~~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~l~~~~~~~~~~~~a~il 872 (959)
..+++++++++++.++++..++++++..+++.... .+ +..++|+..++..++..+|..+.+..+.+.+...+.+|
T Consensus 874 ~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~~~~--~~---~~~~~F~~~~~~~~~~~i~~v~td~~h~~~f~~q~~il 948 (1073)
T 3gjx_A 874 KLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQ--EE---AAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASIL 948 (1073)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHTT--CH---HHHHHHHHHHHHHHHHHHHHHHTCTTCGGGHHHHHHHH
T ss_pred HHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHhhc--Ch---HHHHHHHHHHHHHHHHHHHHHHhCchHhhhhhHHHHHH
Confidence 99999999999999999999999999999976432 12 34789999999999999999999999999999999999
Q ss_pred HHHHHHh-----------------hHHHHHHHHHHH-hhCCCCCCCHHHHHHHHHHHHHHhcCCCchhhhHHHHHHHHHH
Q 002148 873 LALTRAY-----------------GVRSLEWAKESV-SLIPLTALAEVERSRFLQALSEAASGVDVNAAMAPVEELSDVC 934 (959)
Q Consensus 873 ~~l~~~~-----------------~~~~~~wl~~~l-~~~p~~~~~~~~~~~f~~~l~~~~~~~~~~~f~~~l~~F~~~~ 934 (959)
..++... ...+++|+.+.+ +.|| ++++++.+.|++.++.. .++..+||..++||....
T Consensus 949 ~~l~~~~~~~~i~~~l~~~~~~~n~~~~~~~~~~~l~~~fp--~~~~~qi~~fv~~l~~~--~~d~~~f~~~lrDFli~~ 1024 (1073)
T 3gjx_A 949 AYMFNLVEEGKISTPLNPGNPVNNQMFIQDYVANLLKSAFP--HLQDAQVKLFVTGLFSL--NQDIPAFKEHLRDFLVQI 1024 (1073)
T ss_dssp HHHHHHHTTTCCSCSSSCTTTTCHHHHHHHHHHHHHHHHCT--TSCHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCccccccccCCCccHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHH
Confidence 9986542 235789998888 6899 79999999999999985 468999999999999865
Q ss_pred Hhh------------------------hhHHHHHHhccCCCCccc
Q 002148 935 RRN------------------------RTVQEIVQGALKPLELNR 955 (959)
Q Consensus 935 r~~------------------------~~~~~~~~~~~~~~~~~~ 955 (959)
|.- +.+...|-|.+||.|++.
T Consensus 1025 ke~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 1069 (1073)
T 3gjx_A 1025 KEFAGEDTSDLFLEERETALRQAQEEKHKLQMSVPGILNPHEIPE 1069 (1073)
T ss_dssp TSCCTTTCCTTCTTHHHHHHHHHHHHHHHHSCC------------
T ss_pred HHHcCCCcHHHhHHHHHHHHHHHHHHHHhHHhcCCCCCCccccCh
Confidence 431 112234889999999753
No 6
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=100.00 E-value=1.5e-77 Score=759.38 Aligned_cols=881 Identities=14% Similarity=0.201 Sum_probs=691.2
Q ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcChhhHHHHHHHhccCCCChhHHHHHHHHHHhhhhcCCCCCChhhHHHH
Q 002148 4 QNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGL 83 (959)
Q Consensus 4 ~~~v~~av~~l~~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~~~faa~~L~~ki~~~w~~l~~~~~~~l 83 (959)
.+++.++++++|++ +++.|++|+++|++||++|++|..|.++|.+ +.+.++|||||++|+++|+++|..++++++..+
T Consensus 15 ~~~l~~~l~~~~~p-~~~~r~~Ae~~L~~~~~~p~~~~~l~~iL~~-s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~i 92 (1049)
T 3m1i_C 15 IALLDQVVSTFYQG-SGVQQKQAQEILTKFQDNPDAWQKADQILQF-STNPQSKFIALSILDKLITRKWKLLPNDHRIGI 92 (1049)
T ss_dssp HHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHSTTGGGGHHHHHHH-CSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHhCchHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHH
Confidence 56799999999865 5668999999999999999999999999986 678899999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCC------ChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCCCchhhHHHHhccccccccc
Q 002148 84 QDSLNTLLKKFHKG------PPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFN 157 (959)
Q Consensus 84 r~~Ll~~l~~~~~~------~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~l~~~~~~~~~~L~~L~~l~EE~~~ 157 (959)
|+.+++++.+...+ ++.||+|+|.++|.++.+.+|+.||+ +++++++.+++++..++..+.+|+.++||+.+
T Consensus 93 r~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~--ll~~L~~~~~~~~~~~~~~l~~L~~l~eev~~ 170 (1049)
T 3m1i_C 93 RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPE--FIPELIGSSSSSVNVCENNMIVLKLLSEEVFD 170 (1049)
T ss_dssp HHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTT--HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchH--HHHHHHHHHccChHHHHHHHHHHHHHHHHHHH
Confidence 99999999986433 37899999999999999999999999 99999999875444578899999999999986
Q ss_pred ccc-cCChhHHHHHHHHHHHhHHHHHHHHHHhhhh---hHhHHHHHHHHHHHHhccCCCCCcccccchhHHHHHh-cCCC
Q 002148 158 YKI-AARPERRRQFEKELTSQMEVALSTLTACLHI---NELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALS-SLHS 232 (959)
Q Consensus 158 ~~~-~l~~~~r~~l~~~l~~~~~~vl~~l~~~l~~---~~~~~~~l~~~~sWi~~~~~~~~~~~~~~~ll~~~~~-~L~~ 232 (959)
.+. ..+..||.++++.+..+++.+++++..+++. ++++..+++|+.+|+.| ++.+.+..+++++.+++ .+.+
T Consensus 171 ~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~w---i~~~~~~~~~ll~~l~~~~l~~ 247 (1049)
T 3m1i_C 171 FSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFMTS 247 (1049)
T ss_dssp SCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHHHS
T ss_pred hcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhh---CCHHHHhhhhHHHHHHHHhCCC
Confidence 422 3456778888888988999999999988875 36889999999999997 55555556789998884 4568
Q ss_pred CchHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHh-h-----------HHHhhhc-CCCHHHHHHHHHHHHHh
Q 002148 233 EILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMS-L-----------KAHLTDS-SKDEEDVKAIARLFADM 299 (959)
Q Consensus 233 ~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~-l-----------~~~l~~~-~~d~e~~~~l~~l~~~~ 299 (959)
++++.+|++|+.++++.++... .......+..+++.++. + ...+..+ ++|++..+.+|++++++
T Consensus 248 ~~~~~~a~~~L~~i~~~~~~~~---~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~ 324 (1049)
T 3m1i_C 248 PDTRAITLKCLTEVSNLKIPQD---NDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTY 324 (1049)
T ss_dssp HHHHHHHHHHHHHHHHCCCCTT---CHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCCcc---hhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHH
Confidence 8899999999999998854221 00011223333444443 2 2233222 44567788999999999
Q ss_pred hhHHHHHHhcCC---chHHHHHHHHHhhccCCCcchhhhhHHhHHHhHHHHhhcccccccCcccchHHHHHHHHhhhHHH
Q 002148 300 GDSYVELIATGS---DESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSA 376 (959)
Q Consensus 300 ~~~~~~~l~~~~---~~~~~~l~~ll~~~~~~~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (959)
++.+...+.+.+ +.+..++++++.++.+++++++..+++||+.+.+.+++. ......++++
T Consensus 325 ~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~----------------~~~~~~~~~~ 388 (1049)
T 3m1i_C 325 LARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYE----------------PLKKHIYEEI 388 (1049)
T ss_dssp HHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHS----------------TTCGGGGHHH
T ss_pred HHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhc----------------hhHHHHHHHH
Confidence 999998886532 235678999999999999999999999999999876320 0134578899
Q ss_pred HHHHHHHHHhhccCCCCCCCCCh-----------hhhHHHHHHHHHhhHHHHHhhhccChHHHHHHHHHHHHHhhhhcCC
Q 002148 377 YESLVSLVSFRVQYPQDYQDLSL-----------EDLKEFKHTRYAVADVLIDAASVLGGDATLKILYIKFVEGVACCGN 445 (959)
Q Consensus 377 ~~~Ll~~l~~k~~~p~d~~~~~~-----------d~~~~f~~~R~~~~d~l~~~~~il~~~~~l~~l~~~l~~~~~~~~~ 445 (959)
+.+|+.+++.+|.||+|. +|.+ +|.|++ .+|+.+++++..++.+.+ +.++..+.+.+.+.+.. +
T Consensus 389 l~~Lv~~ll~~m~~~ed~-~~~~dd~~e~~r~~~~d~d~~-~~~~~~~~~L~~l~~~~~-~~~l~~v~~~l~~~l~~--~ 463 (1049)
T 3m1i_C 389 CSQLRLVIIENMVRPEEV-LVVENDEGEIVREFVKESDTI-QLYKSEREVLVYLTHLNV-IDTEEIMISKLARQIDG--S 463 (1049)
T ss_dssp HHHHHHHHHHTCCCCTTC-CEEECTTSCEEECSSCCHHHH-HHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHTS--S
T ss_pred HHHHHHHHHHhcCCCcce-eeeeCCCCcchHhhhccchHH-HHHHHHHHHHHHHHccCH-HHHHHHHHHHHHHHhCC--C
Confidence 999999999999999753 2311 122233 567789999999997765 67999999999887532 2
Q ss_pred CCCCcchhhHHHHHHHHhhcccCCc-cccchHHHhhhccCCC-------CcHHHHHHHHHHHHhhhhHHhhCCCChhhHH
Q 002148 446 KHNEWRPAEAALFCIRAISTYVSVV-EAEVMPQVMALLPKLP-------QQPQLLQTVCLTIGAYSKWFDAASSDPSILA 517 (959)
Q Consensus 446 ~~~~w~~~Ea~l~~l~~l~e~~~~~-~~~~l~~l~~~l~~lp-------~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~ 517 (959)
..+|+.+||++|+++++++++... ++.+++++++.+.++| +||.++.++|+++|+|++|+..||+ +++
T Consensus 464 -~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~---~l~ 539 (1049)
T 3m1i_C 464 -EWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN---FLR 539 (1049)
T ss_dssp -SCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHH---HHH
T ss_pred -CCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHH---HHH
Confidence 578999999999999999988655 3456888888765443 2677888999999999999999986 999
Q ss_pred HHHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhhhhh--------CCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHH
Q 002148 518 SVLSILTSGMSTS-EDTAAAAALAFRHICDDCRKKLC--------GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALS 588 (959)
Q Consensus 518 ~~l~~l~~~l~~~-~~v~~~A~~al~~lc~~c~~~L~--------~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~ 588 (959)
++++.++.+++++ .+|+.+||+||.+||++|+..+. ||++.|++.+..++.. ++.++...++||+|
T Consensus 540 ~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~-----~~~~~~~~~~eai~ 614 (1049)
T 3m1i_C 540 TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTAD-----LQPQQVHTFYKACG 614 (1049)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTT-----SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHH
Confidence 9999999999885 35999999999999999999886 9999999999998864 67888999999999
Q ss_pred HHHhcCCh-HHHHHHHHHhhhhhHHHHHHHHhcCCCcccc----cCchhhhHHHHHHHHHhhhcCCcccHHHHHHHHh--
Q 002148 589 MVITELPQ-VDAKKALEMLCLPVVTPLQEIINQGPEILQK----KHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLW-- 661 (959)
Q Consensus 589 ~vi~~~p~-~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~----~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~-- 661 (959)
.++++.|+ +...+++..++.|++++|.+++.+...+++. +..+.+...+++++.+.+.++.. +.+.+..++
T Consensus 615 ~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~--f~p~~~~i~~~ 692 (1049)
T 3m1i_C 615 IIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGAD--FYPQLGHIYYN 692 (1049)
T ss_dssp HHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGG--GHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHH--HHHHHHHHHHH
Confidence 99999985 5677999999999999999888653321110 01123444566777666666531 222222222
Q ss_pred --HHHHHH-------HHhhc----ccH--HHHHHHHHHHHHHHHH-------hhhhhhhhHHHHHHHHHHHHhhcCCcc-
Q 002148 662 --PIFKAI-------FDIRA----WDM--RTMESLCRACKYAVRT-------SKRFMGITIGAILEEIQGLYQQHQQPC- 718 (959)
Q Consensus 662 --~~l~~i-------l~~~~----~~~--~i~e~~~~~l~~~~~~-------~~~~~~~~l~~l~~~l~~~~~~~~~~~- 718 (959)
.++... ...-+ ..+ ...+.+...+.++++. .+..+.|++|++++.++..|++ .+++
T Consensus 693 ~l~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~~~l~~~~~~~~~~~l~~ll~~~~~-~~~~~ 771 (1049)
T 3m1i_C 693 MLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMN-NVPDA 771 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHH-SCGGG
T ss_pred HHHHHHHHHHHHHHHHHccCchhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHh-CCccc
Confidence 111111 10000 000 1122222222222222 2445568899999999999986 3445
Q ss_pred ----hhHhHHHHHHHhCCCccchHHHHHHHHHHHHHHHHhhcCcccCCCCCCcHHHHHHHHHHHHhhCCCcccC-c-CCh
Q 002148 719 ----FLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIP-S-SVF 792 (959)
Q Consensus 719 ----~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pDl~~~~f~l~~~~~~~~p~~~l~-s-~~l 792 (959)
++++++.++..+|.. +.+.+.+++..+++++++++. .+++++||++++||.|+++++++||..+++ + ..+
T Consensus 772 ~~~~~l~l~~~ii~~~~~~--~~~~l~~i~~~l~~~~~~~i~--~~~~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~ 847 (1049)
T 3m1i_C 772 RDAEVLNCMTTVVEKVGHM--IPQGVILILQSVFECTLDMIN--KDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAF 847 (1049)
T ss_dssp CCTHHHHHHHHHHHHHGGG--CHHHHHHHHHHHHHHHHHHHS--SCSSSSHHHHHHHHHHHHHHHHHCTHHHHHSCHHHH
T ss_pred ccHHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHh--cchhhCHHHHHHHHHHHHHHHHhCHHHHHcCCHHHH
Confidence 999999999999954 778899999999999999997 567889999999999999999999998874 3 348
Q ss_pred HHHHHHHHHhccCCCchhHHHHHHHHHHhhcCcCCCCchhhHHHHHHHHhhccHHHHHHHHHHcccCCCCCCcccHHHHH
Q 002148 793 PSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETVTYAL 872 (959)
Q Consensus 793 ~~~~~~~~~~l~~~~~~~~~~~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~l~~~~~~~~~~~~a~il 872 (959)
..++++++++++.+|+++.+++++||..++++.+....++ ..+.++..+|..|+..++..+++..+++.++..+++|
T Consensus 848 ~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~~~~~~~~~---~~~~f~~~~~~~l~~~~~~~l~~~~h~s~~~~~~~~l 924 (1049)
T 3m1i_C 848 KLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNVP---FANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQALLL 924 (1049)
T ss_dssp HHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHSCSCH---HHHHHHHHHHHHHHHHHHHHHHSTTCGGGHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHhcCChH---HHHHHHHHHHHHHHHHHHHHHhcchHhhhHHHHHHHH
Confidence 9999999999999999999999999999998643211112 2567888999999999999999999999999999999
Q ss_pred HHHHHHh---------------------hHHHHHHHHHHH-hhCCCCCCCHHHHHHHHHHHHHHhcCCCchhhhHHHHHH
Q 002148 873 LALTRAY---------------------GVRSLEWAKESV-SLIPLTALAEVERSRFLQALSEAASGVDVNAAMAPVEEL 930 (959)
Q Consensus 873 ~~l~~~~---------------------~~~~~~wl~~~l-~~~p~~~~~~~~~~~f~~~l~~~~~~~~~~~f~~~l~~F 930 (959)
+.+.... ...+++||.+.+ +.|| ++++++++.|++.++.. .++..+||+.+|||
T Consensus 925 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~~f~~~l~~~--~~~~~~f~~~~rdf 1000 (1049)
T 3m1i_C 925 MKLISLVYDNKISVPLYQEAEVPQGTSNQVYLSQYLANMLSNAFP--HLTSEQIASFLSALTKQ--YKDLVVFKGTLRDF 1000 (1049)
T ss_dssp HHHHHHHHTTCCCSCSSCGGGSSTTCCHHHHHHHHHHHHHHHHCT--TSCHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCcccccccCccccCCCCCcHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHc--cCCHHHHHHHHHHH
Confidence 9997632 236789999888 6787 78999999999999975 35788999999999
Q ss_pred HHHHHhhh
Q 002148 931 SDVCRRNR 938 (959)
Q Consensus 931 ~~~~r~~~ 938 (959)
+..||+..
T Consensus 1001 ~~~~~~~~ 1008 (1049)
T 3m1i_C 1001 LVQIKEVG 1008 (1049)
T ss_dssp HHHHTSSS
T ss_pred hHhhhhhc
Confidence 99999764
No 7
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=100.00 E-value=5.1e-63 Score=626.63 Aligned_cols=888 Identities=14% Similarity=0.166 Sum_probs=620.1
Q ss_pred hHHHHHHHHHHHccC-CCHHHHHHHHHHHHHHhcChhhHHHHHHHhccCCCChhHHHHHHHHHHhhhhcCCCCCChhhHH
Q 002148 3 LQNTVKEALNALYHH-PDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVR 81 (959)
Q Consensus 3 ~~~~v~~av~~l~~~-~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~~~faa~~L~~ki~~~w~~l~~~~~~ 81 (959)
..++|.+++..+|++ +|++.|++|+++|++|+++|++|..+..+|.+++.+.++||||+++|+++|+++|..++++++.
T Consensus 9 ~~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~ 88 (1204)
T 3a6p_A 9 LCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKV 88 (1204)
T ss_dssp HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHH
T ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCchHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 346689999999976 5888999999999999999999999888886446788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcC----CChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCCCchhhHHHHhccccccccc
Q 002148 82 GLQDSLNTLLKKFHK----GPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFN 157 (959)
Q Consensus 82 ~lr~~Ll~~l~~~~~----~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~l~~~~~~~~~~L~~L~~l~EE~~~ 157 (959)
.||+.+++++.+... .++.||+|+|.+++.++.+.+|+.||+ +++++++.+++++..++..+.+|..|+||+.+
T Consensus 89 ~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~--ll~~L~~~~~~~~~~~e~~L~iL~~L~Eev~~ 166 (1204)
T 3a6p_A 89 YLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPD--MLIELDTLSKQGETQTELVMFILLRLAEDVVT 166 (1204)
T ss_dssp HHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTT--HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchH--HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcc
Confidence 999999999987531 578999999999999999999999999 99999999877665678999999999999876
Q ss_pred ccccCChhHHHHHHHHHHHhHHHHHHHHHHhhhh---------------------hHhHHHHHHHHHHHHhccCCCCCcc
Q 002148 158 YKIAARPERRRQFEKELTSQMEVALSTLTACLHI---------------------NELKEQVLEAFASWLRLKHRIPGSV 216 (959)
Q Consensus 158 ~~~~l~~~~r~~l~~~l~~~~~~vl~~l~~~l~~---------------------~~~~~~~l~~~~sWi~~~~~~~~~~ 216 (959)
.+. ....||+.+++.+..+++.|++++..+++. .++...+|+|+.+|+.| ++.+.
T Consensus 167 ~~~-~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~W---i~~~~ 242 (1204)
T 3a6p_A 167 FQT-LPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDW---VSMSH 242 (1204)
T ss_dssp SCC-SCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTT---SCHHH
T ss_pred ccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhc---cCHHH
Confidence 532 345778889999998999999888776643 14778899999999998 55444
Q ss_pred ccc--chhHHHHHhcCCCCchHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHH-HHhhHHHhh--h----cCCCHH
Q 002148 217 LAS--HPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQ-IMSLKAHLT--D----SSKDEE 287 (959)
Q Consensus 217 ~~~--~~ll~~~~~~L~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~-v~~l~~~l~--~----~~~d~e 287 (959)
+.. ..+++.++..+++++++.+|++||.+++++++.+ .++.+++..+... +-.+..... . .++|.+
T Consensus 243 i~~~~~~ll~~l~~~l~~~~lr~~A~ecL~~i~s~~~~~-----~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e 317 (1204)
T 3a6p_A 243 ITAENCKLLEILCLLLNEQELQLGAAECLLIAVSRKGKL-----EDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYV 317 (1204)
T ss_dssp HHTTTSHHHHHHHHGGGCTTTHHHHHHHHHHHHTCCSCH-----HHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHH
T ss_pred HHhccchHHHHHHHHcCCHHHHHHHHHHHHHHHhCCCCh-----hhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHH
Confidence 433 3499999999999999999999999999876531 1222333222111 111112211 1 122346
Q ss_pred HHHHHHHHHHHhhhHHHHHHhc-----CCchHHHHHHHHHhhccCCCcchhhhhHHhHHHhHHHHhhcccccccCcccch
Q 002148 288 DVKAIARLFADMGDSYVELIAT-----GSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASA 362 (959)
Q Consensus 288 ~~~~l~~l~~~~~~~~~~~l~~-----~~~~~~~~l~~ll~~~~~~~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~ 362 (959)
+.+.+|++++++|+.+...+.+ .++.+..++++++.++.|++.+++..+++||+.+.+....
T Consensus 318 ~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~------------- 384 (1204)
T 3a6p_A 318 FLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEIL------------- 384 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTT-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccc-------------
Confidence 7899999999999987776653 3456889999999999999999999999999987754310
Q ss_pred HHHHHHHHhhhHHHHHHHHHHH---HhhccCCCCCCC----C-----C-hhh-hHHHHHHHHHhhHHHHHhhhccChHHH
Q 002148 363 EAERSRRLQVFRSAYESLVSLV---SFRVQYPQDYQD----L-----S-LED-LKEFKHTRYAVADVLIDAASVLGGDAT 428 (959)
Q Consensus 363 ~~~~~~~~~~~~~~~~~Ll~~l---~~k~~~p~d~~~----~-----~-~d~-~~~f~~~R~~~~d~l~~~~~il~~~~~ 428 (959)
.....+++++.+|++++ +.||+||++.+. | | ++| .+.|.+||++++|++++++.+.+ +..
T Consensus 385 -----~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p-~~~ 458 (1204)
T 3a6p_A 385 -----SRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDP-KTS 458 (1204)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCH-HHH
T ss_pred -----cccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCH-HHH
Confidence 01235789999999999 999999985431 1 1 222 36899999999999999999876 567
Q ss_pred HHHHHHHHHHhhhhcC--------------------CCCCCcchhhHHHHHHHHhhcccCC-cc-----ccchHHHhhhc
Q 002148 429 LKILYIKFVEGVACCG--------------------NKHNEWRPAEAALFCIRAISTYVSV-VE-----AEVMPQVMALL 482 (959)
Q Consensus 429 l~~l~~~l~~~~~~~~--------------------~~~~~w~~~Ea~l~~l~~l~e~~~~-~~-----~~~l~~l~~~l 482 (959)
+..+.+.+.+.+.+.. ..+.+|...||..+++.++++++.. .+ +..++++++.+
T Consensus 459 l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~l 538 (1204)
T 3a6p_A 459 FQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMV 538 (1204)
T ss_dssp HHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHH
Confidence 7766666655443210 0134688999999999999988721 11 13467888887
Q ss_pred cCC-CCcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccCC------------C-HHHHHHHHHHHHHHHHHh
Q 002148 483 PKL-PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMST------------S-EDTAAAAALAFRHICDDC 548 (959)
Q Consensus 483 ~~l-p~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~------------~-~~v~~~A~~al~~lc~~c 548 (959)
.++ +.||.++.+.+.++|+|++|+.+||+ +++++|++++.++.+ . ++++.+||.+|.+||++|
T Consensus 539 l~~~~~~p~l~~~~i~~l~~l~~~~~~~p~---~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~ 615 (1204)
T 3a6p_A 539 LNFDTKDPLILSCVLTNVSALFPFVTYRPE---FLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDY 615 (1204)
T ss_dssp HHCCCSCHHHHHHHHHHHHHHGGGGGTCGG---GHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhCCCCChHHHHHHHHHHHHHHHHHhcCch---HHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHh
Confidence 775 46999999999999999999999997 999999999977644 1 149999999999999999
Q ss_pred hhhhhCCHHHHHHHHHHHhhccCCCC-CCHhhHHHHHHHHHHHHhcCChHHH-HHHHHHhhhhhHHHHHH-----HHhcC
Q 002148 549 RKKLCGYLDGLYNVYRTAVNGEGSLK-VSAEDSLHLVEALSMVITELPQVDA-KKALEMLCLPVVTPLQE-----IINQG 621 (959)
Q Consensus 549 ~~~L~~~~~~ll~~~~~~~~~~~~~~-l~~~~~~~l~eai~~vi~~~p~~~~-~~~l~~ll~p~~~~l~~-----~~~~~ 621 (959)
+..|.||+++|.+.+..++..+ . ++..++..+++|++.+...+++++. ..+++.++.|++++|.+ .++..
T Consensus 616 ~~~L~p~~~~i~~~~~~~l~~~---~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~~~~~~~~s~~ 692 (1204)
T 3a6p_A 616 PQLVLPNFDMLYNHVKQLLSNE---LLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWLSQDMHRVLSDV 692 (1204)
T ss_dssp HHHHGGGHHHHHHHHHHHHHST---TTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSCHHHHHHHHCH
T ss_pred hHHHHHHHHHHHHHHHHHHhCc---ccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHccHHHHHhhcCH
Confidence 9999999999999999988753 4 7899999999999988656565544 47799999999999884 33221
Q ss_pred C----------Cc-----ccccCc--hhhhHHHHHHHHHhhhc--------------------C-C---cccHHHHHHHH
Q 002148 622 P----------EI-----LQKKHP--RDLTVHIDRFAYIFRYV--------------------N-H---PEAVADAIQRL 660 (959)
Q Consensus 622 ~----------~~-----~~~~~~--~~~~~~l~~l~~~~~~~--------------------~-~---~~~~~~~~~~~ 660 (959)
. .. .++... ..+...+..+....+-. . . .+|+.+.+..+
T Consensus 693 ~~f~~~~G~~~~~~~~~~~d~~~~~r~~l~~~~~~l~~~l~r~~~~~~~~~~~~~gf~~~~~~~~~p~~~~p~~~~i~~i 772 (1204)
T 3a6p_A 693 DAFIAYVGTDQKSCDPGLEDPCGLNRARMSFCVYSILGVVKRTCWPTDLEEAKAGGFVVGYTSSGNPIFRNPCTEQILKL 772 (1204)
T ss_dssp HHHHHHHTSSCC--CTTCCTHHHHHHHHHHHHHHHHHHHHHHCCCCSSHHHHHHTTCEEEECSSCCEEECCTTHHHHHHH
T ss_pred HHHHHHhCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHHhcCCCChhhhhcCCceeccCCCCCccccCchHHHHHHH
Confidence 1 00 000001 11112222222222211 0 1 26889999999
Q ss_pred hHHHHHHHHhhc--ccHHHHHHHH-------------HHHHHHHHHh-hhhhh-hhHHHHHHHHHHHHhhcCCcchhHhH
Q 002148 661 WPIFKAIFDIRA--WDMRTMESLC-------------RACKYAVRTS-KRFMG-ITIGAILEEIQGLYQQHQQPCFLYLS 723 (959)
Q Consensus 661 ~~~l~~il~~~~--~~~~i~e~~~-------------~~l~~~~~~~-~~~~~-~~l~~l~~~l~~~~~~~~~~~~L~l~ 723 (959)
||.+.+++..+. +++++.+.++ +++..++... ..+.. +..+...+.+-..+...+.+||..+.
T Consensus 773 lP~ll~Ll~~~~~l~~p~~~~~l~~~~~~~~~~~~~er~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~re~~y~~lg 852 (1204)
T 3a6p_A 773 LDNLLALIRTHNTLYAPEMLAKMAEPFTKALDMLDAEKSAILGLPQPLLELNDSPVFKTVLERMQRFFSTLYENCFHILG 852 (1204)
T ss_dssp HHHHHHHHHHHHHTTSHHHHTTSCGGGTTTTSCCHHHHHHHTCCCCCCCCTTCCCSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCcHhhhhcCHHHHHHHhccHHHHHHhcCCCcccccccccCCCcCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999998887 7888888877 5544433321 11111 22245566666667777788887665
Q ss_pred HHHHHHhCCCccchHHHHHHHHHHHHHHHHhhcCcccCCCCCCcHHHHHHHHHHHHhhCCCcccCc---CChHHHHHHHH
Q 002148 724 SEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPS---SVFPSLVDCSM 800 (959)
Q Consensus 724 ~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pDl~~~~f~l~~~~~~~~p~~~l~s---~~l~~~~~~~~ 800 (959)
+. +..+|.. ++.. .++-..+.+.++..+.... ....+++++.+| ..++++||..+..+ +++..++..+.
T Consensus 853 ~~-~~~l~~~--fy~~-~~l~~~l~~~~f~~l~~~~-~~~l~~li~~~~---~p~i~~CP~~~~~~~l~plL~~lf~~~~ 924 (1204)
T 3a6p_A 853 KA-GPSMQQD--FYTV-EDLATQLLSSAFVNLNNIP-DYRLRPMLRVFV---KPLVLFCPPEHYEALVSPILGPLFTYLH 924 (1204)
T ss_dssp HH-HHHHCTT--TTTS-TTHHHHHHHHTTSSTTTSC-HHHHHHHHHHTH---HHHHHTCCGGGTTTTHHHHHHHHHHHHH
T ss_pred HH-hhccccc--ccCC-cchHHHHHHHHHhcchhcc-HHHHHHHHHHHH---HHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 43 3444443 2211 0111112222332222110 011233444443 67777888766554 45555554432
Q ss_pred Hhcc----------------------------------------------------------------------------
Q 002148 801 IGIT---------------------------------------------------------------------------- 804 (959)
Q Consensus 801 ~~l~---------------------------------------------------------------------------- 804 (959)
..+.
T Consensus 925 ~~L~~~W~~i~~~~~~~~~~~~~~~~~~~~E~~~e~llr~lTr~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1004 (1204)
T 3a6p_A 925 MRLSQKWQVINQRSLLCGEDEAADENPESQEMLEEQLVRMLTREVMDLITVCCVSKKGADHSSAPPADGDDEEMMATEVT 1004 (1204)
T ss_dssp HHHHHHHHHHHTC--------------CHHHHHHHHHHHHHHHHHHHHHHHHHBC-------------------------
T ss_pred HHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccccccccccccc
Confidence 2221
Q ss_pred --------------CCCchhHHHHHHHHHHhhcCcCCCCc----hhh-HHHHHHHHh-----hccHHHHHHHHHHcc-cC
Q 002148 805 --------------VQHREASNSILTFLSDIFDLAKSCKG----EEF-LSVRDSVII-----PRGASITRILIASLT-GA 859 (959)
Q Consensus 805 --------------~~~~~~~~~~~~fl~~li~~~~~~~~----~~~-~~~~~~~~~-----~~g~~lv~~ll~~l~-~~ 859 (959)
+.++++..+++.|+...+.|+.++.. ..+ ...++.++. +.|..++..++.++. +.
T Consensus 1005 ~~~~~~~~~l~~~~l~~~~~~~~~l~~~~~~l~~~D~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~vl~~l~~~~ 1084 (1204)
T 3a6p_A 1005 PSAMAELTDLGKCLMKHEDVCTALLITAFNSLAWKDTLSCQRTTSQLCWPLLKQVLSGTLLADAVTWLFTSVLKGLQMHG 1084 (1204)
T ss_dssp -----CBCHHHHHHHSSHHHHHHHHHHHHHHTTSSCHHHHHHHHHHTHHHHHTTSCSSCCCHHHHHHHHHHHHHHHHHSC
T ss_pred ccchhhcchHHHHHhcCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHHhcC
Confidence 11223366677888888888532100 000 012232222 458899989999997 88
Q ss_pred CCCCCcccHHHHHHHHHHHhhHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhc-CCCchhhhHHHHHHHHHHHhh
Q 002148 860 LPSSRLETVTYALLALTRAYGVRSLEWAKESVSLIPLTALAEVERSRFLQALSEAAS-GVDVNAAMAPVEELSDVCRRN 937 (959)
Q Consensus 860 ~~~~~~~~~a~il~~l~~~~~~~~~~wl~~~l~~~p~~~~~~~~~~~f~~~l~~~~~-~~~~~~f~~~l~~F~~~~r~~ 937 (959)
.|..+..+++.++..++..++..+. |+++++..+|+ +++++.++|.+++..... +++.|+-|..+++|...+||-
T Consensus 1085 ~~~~~~~~l~~l~~~i~~~~~~~~~-~~~~vl~~lP~--i~~~~~~~f~~~l~~~~~~~~~~k~qr~~~~~ll~~~~g~ 1160 (1204)
T 3a6p_A 1085 QHDGCMASLVHLAFQIYEALRPRYL-EIRAVMEQIPE--IQKDSLDQFDCKLLNPSLQKVADKRRKDQFKRLIAGCIGK 1160 (1204)
T ss_dssp SCHHHHHHHHHHHHHHHHHSTTTCS-THHHHHTTSSS--CCHHHHHHHHHHSSCC------------------------
T ss_pred CCchhHHHHHHHHHHHHHHhCCCCc-cHHHHHHhCCC--CCHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHhcCC
Confidence 8888889999999999998887777 99999999994 899999999998854322 345788899999999877774
No 8
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=100.00 E-value=2.2e-37 Score=388.70 Aligned_cols=718 Identities=12% Similarity=0.119 Sum_probs=467.6
Q ss_pred CchHHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcChhhHHHHHHHhccCCCChhHHHHHHHHHHhhhhcCCC------C
Q 002148 1 MELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVE------E 74 (959)
Q Consensus 1 ~~~~~~v~~av~~l~~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~~~faa~~L~~ki~~~w~------~ 74 (959)
|.-.++|.+++...+ ++|++.| |+++|++++++|+.|..+.+++.+++.+.++|++|+++||++|+++|. .
T Consensus 1 M~d~~~l~~~L~~~~-spd~~~r--Ae~~L~~~~~~p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~ 77 (960)
T 1wa5_C 1 MSDLETVAKFLAESV-IASTAKT--SERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHL 77 (960)
T ss_dssp CCHHHHHHHHHHHTT-SGGGHHH--HHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBS
T ss_pred CCcHHHHHHHHHHhc-CCCHHHH--HHHHHHHhhcCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCC
Confidence 777888999998865 6677777 999999999999999999999987667889999999999999999997 7
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCC-CchhhHHHHhccccc
Q 002148 75 LPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHP-EFVPGFLELLTVLPE 153 (959)
Q Consensus 75 l~~~~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~l~~~~-~~~~~~L~~L~~l~E 153 (959)
++++++..+|+.+++.+.. .++.||+|+|.+++.++.+.+|+.||+ +++++++.+++++ ......|.+|..+.+
T Consensus 78 l~~~~k~~ik~~ll~~l~~---~~~~ir~~l~~~ia~ia~~d~p~~Wp~--ll~~L~~~l~s~~~~~~~~aL~~l~~i~~ 152 (960)
T 1wa5_C 78 LPANNVELIKKEIVPLMIS---LPNNLQVQIGEAISSIADSDFPDRWPT--LLSDLASRLSNDDMVTNKGVLTVAHSIFK 152 (960)
T ss_dssp SCHHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHSTTTCTT--HHHHHHTTCCSSCTTHHHHHHHHHHHHHG
T ss_pred CCHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHhhCccchhH--HHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999987 568999999999999999999999999 9999999987643 456778888888887
Q ss_pred ccccccccCChhHHHHHHHHHHHhHHHHHHHHHHh---hhhh-----------HhHHHHHHHHHHHHhccCCCCCccccc
Q 002148 154 EVFNYKIAARPERRRQFEKELTSQMEVALSTLTAC---LHIN-----------ELKEQVLEAFASWLRLKHRIPGSVLAS 219 (959)
Q Consensus 154 E~~~~~~~l~~~~r~~l~~~l~~~~~~vl~~l~~~---l~~~-----------~~~~~~l~~~~sWi~~~~~~~~~~~~~ 219 (959)
+.... . .+++.+.+++..+...++.+++++... ++.+ ++...+++++.+-+.. .+|.
T Consensus 153 ~~~~~-~-~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~--~~~~----- 223 (960)
T 1wa5_C 153 RWRPL-F-RSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQ--DIPE----- 223 (960)
T ss_dssp GGTTS-C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSS--CCCH-----
T ss_pred HHHHh-h-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhc--cchH-----
Confidence 65321 1 123445566666777788777776544 3321 1223345555432211 1211
Q ss_pred chhHHHHHhcCCCCchHHHHHHHHHHHHhhhccCCCCCCC-CchhHHHHHHHHHHhhHHHhhhcCCCHHHHHHHHHHHHH
Q 002148 220 HPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGAT-VNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFAD 298 (959)
Q Consensus 220 ~~ll~~~~~~L~~~~~~~~a~~~l~~ii~~~~~~~~~~~~-~~~~~~~~l~~~v~~l~~~l~~~~~d~e~~~~l~~l~~~ 298 (959)
.+. +.+...+..+..++....+....|.+ +.... .+...+.++++++.
T Consensus 224 --~~~---------~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~--------------------~~~vk~~~~~~l~~ 272 (960)
T 1wa5_C 224 --FFE---------DNIQVGMGIFHKYLSYSNPLLEDPDETEHASV--------------------LIKVKSSIQELVQL 272 (960)
T ss_dssp --HHH---------HTHHHHHHHHHHHHSCCSCCCC------CCCH--------------------HHHHHHHHHHHHHH
T ss_pred --HHH---------HHHHHHHHHHHHHHcCCCCcccCCcccccccH--------------------HHHHHHHHHHHHHH
Confidence 000 01122222333333221100000000 00000 01123456677777
Q ss_pred hhhHHHHHHhcCCchHHHHHHHHHhhcc-----CCCcchhhhhHHhHHHhHHHHhhcccccccCcccchHHHHHHHHhhh
Q 002148 299 MGDSYVELIATGSDESMLIVHALLEVAS-----HPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVF 373 (959)
Q Consensus 299 ~~~~~~~~l~~~~~~~~~~l~~ll~~~~-----~~~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (959)
+.+.+...+. +....+++.++.... ..++.+...+++||..+.+.- ..+..+
T Consensus 273 l~~~~~~~f~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~--------------------~~~~~~ 329 (960)
T 1wa5_C 273 YTTRYEDVFG---PMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIP--------------------KYFEIF 329 (960)
T ss_dssp HHHHCHHHHH---HHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSH--------------------HHHGGG
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcH--------------------hHHHHH
Confidence 7777666553 344556666665443 236788999999998765321 123455
Q ss_pred H--HHHHHHH-HHHHhhccCCC-CCCCCChhh---------hHHHHHHHHHhhHHHHHhhhccChHHHHHHHHHHHHHhh
Q 002148 374 R--SAYESLV-SLVSFRVQYPQ-DYQDLSLED---------LKEFKHTRYAVADVLIDAASVLGGDATLKILYIKFVEGV 440 (959)
Q Consensus 374 ~--~~~~~Ll-~~l~~k~~~p~-d~~~~~~d~---------~~~f~~~R~~~~d~l~~~~~il~~~~~l~~l~~~l~~~~ 440 (959)
+ +++.+++ .+++..|.|++ |.+.|++|. .+++...|+..++++..++...| +.++..+.+.+.+.+
T Consensus 330 ~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~-~~v~~~~l~~i~~~l 408 (960)
T 1wa5_C 330 NNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE-VLVTNIFLAHMKGFV 408 (960)
T ss_dssp CSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc-hhHHHHHHHHHHHHH
Confidence 5 8999999 78999999976 445565432 24556789999999999998888 567777777666654
Q ss_pred hhc-CCCCCCcchhhHHHHHHHHhhcccC---Ccccc-----chHHH-----hhhccC-CCCcHHHHHHHHHHHHhhhhH
Q 002148 441 ACC-GNKHNEWRPAEAALFCIRAISTYVS---VVEAE-----VMPQV-----MALLPK-LPQQPQLLQTVCLTIGAYSKW 505 (959)
Q Consensus 441 ~~~-~~~~~~w~~~Ea~l~~l~~l~e~~~---~~~~~-----~l~~l-----~~~l~~-lp~~~~v~~t~~~~ig~y~~~ 505 (959)
.+. .+++.+|+..||+++++++++++.. ..... .+..+ +..+.. -|.||.||.++|+++|+|++|
T Consensus 409 ~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~ 488 (960)
T 1wa5_C 409 DQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQ 488 (960)
T ss_dssp HHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGG
T ss_pred HHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhh
Confidence 321 1124679999999999999987532 11111 23232 222222 124999999999999999999
Q ss_pred HhhCCCChhhHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHH-----------hhhhhhCCHHHHHHHHHHHhhccCCC
Q 002148 506 FDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDD-----------CRKKLCGYLDGLYNVYRTAVNGEGSL 573 (959)
Q Consensus 506 l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~lc~~-----------c~~~L~~~~~~ll~~~~~~~~~~~~~ 573 (959)
+ +|+ ++.++++.+++++.+++ .|+.+||+||.+||+. ++..+.||++.+++.+..+++..+..
T Consensus 489 ~--~~~---~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~ 563 (960)
T 1wa5_C 489 L--TKA---QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSS 563 (960)
T ss_dssp S--CHH---HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCC
T ss_pred C--CHH---HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCC
Confidence 8 343 89999999999998763 4899999999999983 35779999999999999988752100
Q ss_pred CCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCCcccH
Q 002148 574 KVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAV 653 (959)
Q Consensus 574 ~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 653 (959)
.....+...++++++.++...+ ++..+++..++..++..+.....+.. ...-....+++|+.+++. .+|+++
T Consensus 564 ~~~~~~~e~l~~al~~vv~~~~-~~~~p~~~~l~~~L~~~l~~~~~~~~------~~~~~~~~~e~l~~l~~~-~~~~~~ 635 (960)
T 1wa5_C 564 PEKLAENEFLMRSIFRVLQTSE-DSIQPLFPQLLAQFIEIVTIMAKNPS------NPRFTHYTFESIGAILNY-TQRQNL 635 (960)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHT-TTTGGGHHHHHHHHHHHHHHHTTSCC------CHHHHHHHHHHHHHHHHT-SCGGGH
T ss_pred CCcccccHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHhCCC------CcHHHHHHHHHHHHHHhc-CCcchH
Confidence 0012255789999999998876 44557777888888777776644321 111123468999999987 456788
Q ss_pred HHHHHHHhHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH--HHHhhcC-CcchhHhHHHHHHHh
Q 002148 654 ADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQ--GLYQQHQ-QPCFLYLSSEVIKIF 730 (959)
Q Consensus 654 ~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~~~~~~~~~~~~l~~l~~~l~--~~~~~~~-~~~~L~l~~~li~~~ 730 (959)
..+.+.+||++..+++.... +..+.++.++..++... ..+.++++.++..+. ..++... .+....++...+...
T Consensus 636 ~~~~~~~~p~~~~iL~~~~~--~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~~ 712 (960)
T 1wa5_C 636 PLLVDSMMPTFLTVFSEDIQ--EFIPYVFQIIAFVVEQS-ATIPESIKPLAQPLLAPNVWELKGNIPAVTRLLKSFIKTD 712 (960)
T ss_dssp HHHHHHHHHHHHHHHHTTCT--TTHHHHHHHHHHHHHHC-SSCCTTTGGGHHHHTSGGGGCCTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhH--hhHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHcCHHHhcCCCCchhHHHHHHHHHHhC
Confidence 88999999999999986543 35566666666555543 333344444444444 3333221 112222333333332
Q ss_pred CCCccchHHHHHHHHHHHHHHHHhhcCcccCCCCCCcHHHHHHHHHHHHhhCCCc-ccCcCChHHHHHHHHHhccCCCch
Q 002148 731 GSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQL-FIPSSVFPSLVDCSMIGITVQHRE 809 (959)
Q Consensus 731 ~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pDl~~~~f~l~~~~~~~~p~~-~l~s~~l~~~~~~~~~~l~~~~~~ 809 (959)
+.. +.+ +..+++..-.++. ...+| ...|.++..++.++|.. +. ++++.++...+..++....+
T Consensus 713 ~~~--~~~-----~~~~l~~~~~~~~-----~~~~~--~~a~~ll~~i~~~~~~~~~~--~yl~~i~~~l~~~l~~~~~~ 776 (960)
T 1wa5_C 713 SSI--FPD-----LVPVLGIFQRLIA-----SKAYE--VHGFDLLEHIMLLIDMNRLR--PYIKQIAVLLLQRLQNSKTE 776 (960)
T ss_dssp GGG--CSC-----SHHHHHHHHHHHT-----CTTTH--HHHHHHHHHHHHHSCHHHHG--GGHHHHHHHHHHGGGSSCCH
T ss_pred hHH--HHH-----HHHHHHHHHHHhC-----CCccc--chHHHHHHHHHHHCCHHHHH--HHHHHHHHHHHHHHhhCCcH
Confidence 211 111 1111111111122 11244 78899999999999876 43 48889999988888766544
Q ss_pred hHH-HHHHHHHHhh
Q 002148 810 ASN-SILTFLSDIF 822 (959)
Q Consensus 810 ~~~-~~~~fl~~li 822 (959)
..+ +.+.|+..++
T Consensus 777 ~~~~~~l~~~~~~~ 790 (960)
T 1wa5_C 777 RYVKKLTVFFGLIS 790 (960)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 444 6666666655
No 9
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=7.4e-36 Score=371.44 Aligned_cols=768 Identities=13% Similarity=0.140 Sum_probs=518.7
Q ss_pred hHHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcChhhHHHHHHHhcc-CCCChhHHHHHHHHHHhhhhcCCCCCChhhHH
Q 002148 3 LQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHD-ATSNLETLIFCSQTLRSKVQRDVEELPSEAVR 81 (959)
Q Consensus 3 ~~~~v~~av~~l~~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~-~~~~~~~~~faa~~L~~ki~~~w~~l~~~~~~ 81 (959)
..+++.+++...+ ++|++.|++|+++|++++++|+.|..+..++.+ .+.+.++|++|+..||+.|+++|..++++++.
T Consensus 11 ~~~~l~~~l~~~~-s~d~~~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~ 89 (852)
T 4fdd_A 11 GLQQILQLLKESQ-SPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTD 89 (852)
T ss_dssp HHHHHHHHHHHHT-CSCHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHH
T ss_pred hHHHHHHHHHHHh-CcCHHHHHHHHHHHHHHHhCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHH
Confidence 4567888888876 569999999999999999999999999999985 46788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCC-CchhhHHHHhcccccccccccc
Q 002148 82 GLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHP-EFVPGFLELLTVLPEEVFNYKI 160 (959)
Q Consensus 82 ~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~l~~~~-~~~~~~L~~L~~l~EE~~~~~~ 160 (959)
.+|+.+++.+.. .+..||++++.+++.++.+.+++.||+ +++.+.+.+++.. ......+..|..+.++....-
T Consensus 90 ~ik~~ll~~l~~---~~~~vr~~~a~~i~~ia~~~~~~~wp~--ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~- 163 (852)
T 4fdd_A 90 FIKSECLNNIGD---SSPLIRATVGILITTIASKGELQNWPD--LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEIL- 163 (852)
T ss_dssp HHHHHHHTTTTC---SSHHHHHHHHHHHHHHHHHTTTTTCTT--HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHH-
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHHHHHHhcCccccHH--HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHh-
Confidence 999999998753 677899999999999999888889999 9999999887643 345667777777776653210
Q ss_pred cCChhHHHHHHHHHHHhHHHHHHHHHHhhhh--hHhHHHHHHHHHHHHhccCCCCCcccccchhHHHHHhcCCCCchHHH
Q 002148 161 AARPERRRQFEKELTSQMEVALSTLTACLHI--NELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEA 238 (959)
Q Consensus 161 ~l~~~~r~~l~~~l~~~~~~vl~~l~~~l~~--~~~~~~~l~~~~sWi~~~~~~~~~~~~~~~ll~~~~~~L~~~~~~~~ 238 (959)
.+ +.+....+.++..+.+.+.+ ++++..+++|+..++... +.
T Consensus 164 -----~~----~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~---~~------------------------ 207 (852)
T 4fdd_A 164 -----DS----DVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISR---TQ------------------------ 207 (852)
T ss_dssp -----HH----CSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTT---CH------------------------
T ss_pred -----ch----hhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc---cH------------------------
Confidence 00 00011133344444334433 245666666665444310 00
Q ss_pred HHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhhhcCCCHHHHHHHHHHHHHhhhHHHHHHhcCCchHHHHH
Q 002148 239 SVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIV 318 (959)
Q Consensus 239 a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~l~~~~~d~e~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~l 318 (959)
.....+..+++.+.. . ..+++++..+..++.+..+++.++..+. +++..++
T Consensus 208 ---------------------~~~~~~~~~l~~l~~---~--~~d~~~~vr~~a~~~L~~l~~~~~~~~~---~~l~~l~ 258 (852)
T 4fdd_A 208 ---------------------ALMLHIDSFIENLFA---L--AGDEEPEVRKNVCRALVMLLEVRMDRLL---PHMHNIV 258 (852)
T ss_dssp ---------------------HHHTSHHHHHHHHHH---H--HTCCCHHHHHHHHHHHHHHHHHCHHHHG---GGHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHH---H--cCCCCHHHHHHHHHHHHHHHHhCHHHHH---HHHHHHH
Confidence 000111122222211 1 1355666777888889888888877764 4567899
Q ss_pred HHHHhhccCCCcchhhhhHHhHHHhHHHHhhcccccccCcccchHHHHHHHHhhhHHHHHHHHHHHHhhccCCCCCCCC-
Q 002148 319 HALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDL- 397 (959)
Q Consensus 319 ~~ll~~~~~~~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~d~~~~- 397 (959)
+.++.+..++++++...+++||..+.+.. .....++|++.++++.++.+|.|+++...|
T Consensus 259 ~~l~~~~~~~~~~vr~~a~e~l~~l~~~~--------------------~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~ 318 (852)
T 4fdd_A 259 EYMLQRTQDQDENVALEACEFWLTLAEQP--------------------ICKDVLVRHLPKLIPVLVNGMKYSDIDIILL 318 (852)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHTTST--------------------THHHHHTTTHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHccCCcHHHHHHHHHHHHHHhcch--------------------hHHHHHHHHHHHHHHHHHHHcCCcHhHHHHh
Confidence 99999999999999999999998876421 012345778889999999999887521111
Q ss_pred --C--hh--hhHH--HHHHHHHhhHHHHHhhhccChHHHHHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHhhcccCC
Q 002148 398 --S--LE--DLKE--FKHTRYAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSV 469 (959)
Q Consensus 398 --~--~d--~~~~--f~~~R~~~~d~l~~~~~il~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~l~e~~~~ 469 (959)
| +| +.+. -...|+....++..++...| +.++..+.+.+.+.+. +.+|+.+++++++++.+++++..
T Consensus 319 ~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~-~~~~~~l~~~l~~~l~-----~~~~~~R~aa~~alg~i~~~~~~ 392 (852)
T 4fdd_A 319 KGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR-DELLPHILPLLKELLF-----HHEWVVKESGILVLGAIAEGCMQ 392 (852)
T ss_dssp HC------------CCCCHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHT-----CSSHHHHHHHHHHHHHTTTTTHH
T ss_pred cCCcccccccccccccchHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHhcchH
Confidence 0 11 1111 12347778888888888877 4677888888877653 46899999999999999998865
Q ss_pred ccccchHHHhhhccC-C-CCcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHH
Q 002148 470 VEAEVMPQVMALLPK-L-PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS-EDTAAAAALAFRHICD 546 (959)
Q Consensus 470 ~~~~~l~~l~~~l~~-l-p~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~-~~v~~~A~~al~~lc~ 546 (959)
...++++.++..+.. + .+++.||.++++++|++++|+...+. ..++..+++.++.++.++ .+++..|+.||..+|+
T Consensus 393 ~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~-~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~ 471 (852)
T 4fdd_A 393 GMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPP-DTYLKPLMTELLKRILDSNKRVQEAACSAFATLEE 471 (852)
T ss_dssp HHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCT-TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 444667777776654 3 24899999999999999999976431 137889999999888654 2499999999999999
Q ss_pred HhhhhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCChHH-HHHHHHHhhhhhHHHHHHHHhcCCCcc
Q 002148 547 DCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVD-AKKALEMLCLPVVTPLQEIINQGPEIL 625 (959)
Q Consensus 547 ~c~~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~-~~~~l~~ll~p~~~~l~~~~~~~~~~~ 625 (959)
.++..+.||++.++..+...++. ........++++++.++..+++.- ...++..++.++++.+..+.+..
T Consensus 472 ~~~~~l~~~l~~ll~~L~~~l~~-----~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~---- 542 (852)
T 4fdd_A 472 EACTELVPYLAYILDTLVFAFSK-----YQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDED---- 542 (852)
T ss_dssp HHGGGGGGGHHHHHHHHHHHHHH-----CCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTC----
T ss_pred HhhHhhHhHHHHHHHHHHHHHHH-----hChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhccccc----
Confidence 99999999999999999998864 356677788999999997765432 23578888888877755443211
Q ss_pred cccCchhhhHHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhh---------------cccHHHHHHHHHHHHHHHH
Q 002148 626 QKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIR---------------AWDMRTMESLCRACKYAVR 690 (959)
Q Consensus 626 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~---------------~~~~~i~e~~~~~l~~~~~ 690 (959)
..+...+++++.++..++. .+.++...+++.+..++... ..+.+++..++..++.+++
T Consensus 543 -----~~~~~~~~~l~~i~~~~g~--~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~ 615 (852)
T 4fdd_A 543 -----KDLFPLLECLSSVATALQS--GFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAE 615 (852)
T ss_dssp -----TTHHHHHHHHHHHHHHHGG--GGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHhH--hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHH
Confidence 1122457788888777653 34445555555333333221 1145677788899999999
Q ss_pred HhhhhhhhhH--HHHHHHHHHHHhhcC---CcchhHhHHHHHHHhCCCccchHHHHHHHHHHHHHHHHhhcCcccCCCCC
Q 002148 691 TSKRFMGITI--GAILEEIQGLYQQHQ---QPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRP 765 (959)
Q Consensus 691 ~~~~~~~~~l--~~l~~~l~~~~~~~~---~~~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~p 765 (959)
.+|..+.+++ +.++..+...+.... ...+..+++.++..++.. +.+.+..++.. ....+. .+++
T Consensus 616 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~--~~~~l~~~lp~----l~~~l~-----~~~~ 684 (852)
T 4fdd_A 616 GLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQH--VKPCIADFMPI----LGTNLN-----PEFI 684 (852)
T ss_dssp HHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGG--TGGGHHHHHHH----HHHTCC-----TTSH
T ss_pred HHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHH--HHHHHHHHHHH----HHHHcC-----ccch
Confidence 9999988887 677777777664321 124567778877777643 44444433222 222222 3456
Q ss_pred CcHHHHHHHHHHHHhhCCCcccCcCChHHHHHHHHHhccCCC--chhHHHHHHHHHHhhcCcCCCCchhhHHHHHHHHhh
Q 002148 766 DVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQH--REASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIP 843 (959)
Q Consensus 766 Dl~~~~f~l~~~~~~~~p~~~l~s~~l~~~~~~~~~~l~~~~--~~~~~~~~~fl~~li~~~~~~~~~~~~~~~~~~~~~ 843 (959)
+++......++.+.++.+..+. +++..++...+.-+..++ +.....++..+.++...+ + +.+.+
T Consensus 685 ~v~~~a~~alg~i~~~~~~~~~--p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~-----~-------~~~~~ 750 (852)
T 4fdd_A 685 SVCNNATWAIGEISIQMGIEMQ--PYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVC-----P-------QEVAP 750 (852)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGG--GGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHC-----H-------HHHGG
T ss_pred HHHHHHHHHHHHHHHHhhHhHH--HHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhC-----H-------HHhCc
Confidence 7777777778887776544332 355666666655554432 234455555555555321 1 23345
Q ss_pred ccHHHHHHHHHHcccCCCCCCcccHHHHHHHHHHHhhHHHHHH---HHHHHhhCCCCCCCHHHHHHHHHHHH
Q 002148 844 RGASITRILIASLTGALPSSRLETVTYALLALTRAYGVRSLEW---AKESVSLIPLTALAEVERSRFLQALS 912 (959)
Q Consensus 844 ~g~~lv~~ll~~l~~~~~~~~~~~~a~il~~l~~~~~~~~~~w---l~~~l~~~p~~~~~~~~~~~f~~~l~ 912 (959)
+...++..++..+-..-....-+....-|-.+.+.+|.....- +-.++.... ..+++.++.|.+-+.
T Consensus 751 ~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~l~ 820 (852)
T 4fdd_A 751 MLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWI--NPKDDLRDMFCKILH 820 (852)
T ss_dssp GHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHTCS--SCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHH
Confidence 5566666677666432223334456677777788888643222 223444433 237888888876663
No 10
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=3.2e-33 Score=349.70 Aligned_cols=695 Identities=13% Similarity=0.141 Sum_probs=483.1
Q ss_pred CchHHHHHHHHHHH-ccCCCHHHHHHHHHHHHHHhcC--hhhHHHHHHHhccCCCChhHHHHHHHHHHhhhhcCC-----
Q 002148 1 MELQNTVKEALNAL-YHHPDDAVRMQADRWLQDFQHT--IDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDV----- 72 (959)
Q Consensus 1 ~~~~~~v~~av~~l-~~~~d~~~r~~A~~~L~~~q~s--~~aw~~~~~lL~~~~~~~~~~~faa~~L~~ki~~~w----- 72 (959)
|.. .++.+++... + ++|++.|++|+++|++++++ |+.|..+.+++.+.+.+.++|++|+++|+++++++|
T Consensus 1 Md~-~~l~~~L~~~~~-s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~ 78 (861)
T 2bpt_A 1 MST-AEFAQLLENSIL-SPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQ 78 (861)
T ss_dssp CCH-HHHHHHHHHHHH-CSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHH
T ss_pred CCH-HHHHHHHHHccc-CcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHH
Confidence 554 4689999997 6 67999999999999999986 999999999998755688999999999999998775
Q ss_pred ------CC-CChhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccc-cccCCccchHHHHHhcCCC--CCchh
Q 002148 73 ------EE-LPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISA-EDWGGGGIVNWLRDEMNSH--PEFVP 142 (959)
Q Consensus 73 ------~~-l~~~~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~-~~Wp~~~~~~~l~~~l~~~--~~~~~ 142 (959)
.. ++++++..+|+.+++.+.. .+..+|++++.+++.++.+.+| +.||+ +++.+.+.+.++ +....
T Consensus 79 ~~~~~~~~~l~~~~~~~ik~~ll~~l~~---~~~~vr~~~~~~l~~i~~~~~p~~~w~~--ll~~L~~~l~~~~~~~~r~ 153 (861)
T 2bpt_A 79 QFAQRWITQVSPEAKNQIKTNALTALVS---IEPRIANAAAQLIAAIADIELPHGAWPE--LMKIMVDNTGAEQPENVKR 153 (861)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHHGGGTCCHH--HHHHHHHHTSTTSCHHHHH
T ss_pred HHHHhHhhhCCHHHHHHHHHHHHHHHCC---CchHHHHHHHHHHHHHHHhhCcccccHH--HHHHHHHHHhcCCCHHHHH
Confidence 54 9999999999999998765 5678899999999999998877 49998 999999998764 33467
Q ss_pred hHHHHhcccccccccccccCChhHHHHHHHHHHHhHHHHHHHHHHhhhh----hHhHHHHHHHHHHHHhccCCCCCcccc
Q 002148 143 GFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHI----NELKEQVLEAFASWLRLKHRIPGSVLA 218 (959)
Q Consensus 143 ~~L~~L~~l~EE~~~~~~~l~~~~r~~l~~~l~~~~~~vl~~l~~~l~~----~~~~~~~l~~~~sWi~~~~~~~~~~~~ 218 (959)
..+.+|..+++++.... | .+..+.+.+++.+...+.+ ++++..+++|+..|+.+. ..+ +.
T Consensus 154 ~al~~l~~l~~~~~~~~-------~-----~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~---~~~-~~ 217 (861)
T 2bpt_A 154 ASLLALGYMCESADPQS-------Q-----ALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFI---KNN-ME 217 (861)
T ss_dssp HHHHHHHHHHHTSSTTS-------S-----TTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGC---HHH-HT
T ss_pred HHHHHHHHHHHcCChhh-------h-----HHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH---HHH-cc
Confidence 78899999998865310 0 1234556677766666654 358889999999988752 100 00
Q ss_pred cchhHHHHHhcCCCCchHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhhhcCCCHHHHHHHHHHHHH
Q 002148 219 SHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFAD 298 (959)
Q Consensus 219 ~~~ll~~~~~~L~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~l~~~~~d~e~~~~l~~l~~~ 298 (959)
. . ...+. +++.+ ...+ .+.+.+..+..++++..
T Consensus 218 -------------~-----------------~---------~~~~~---ll~~l---~~~~--~~~~~~~r~~a~~~l~~ 250 (861)
T 2bpt_A 218 -------------R-----------------E---------GERNY---LMQVV---CEAT--QAEDIEVQAAAFGCLCK 250 (861)
T ss_dssp -------------S-----------------H---------HHHHH---HHHHH---HHHH--TCSCHHHHHHHHHHHHH
T ss_pred -------------C-----------------h---------hHHHH---HHHHH---HHHh--cCCCHHHHHHHHHHHHH
Confidence 0 0 00000 11111 0111 23345555566777777
Q ss_pred hhhHHHHHHhcCCchHH-HHHHHHHhhccCCCcchhhhhHHhHHHhHHHHhhccccccc-CcccchHHHHHHHHhhhHHH
Q 002148 299 MGDSYVELIATGSDESM-LIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISF-GNEASAEAERSRRLQVFRSA 376 (959)
Q Consensus 299 ~~~~~~~~l~~~~~~~~-~~l~~ll~~~~~~~~~v~~~~l~fW~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 376 (959)
+++.+...+. +.+. .+++.++.....+++++...+++||..+.+.......+..- +..| .......+++
T Consensus 251 l~~~~~~~~~---~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 321 (861)
T 2bpt_A 251 IMSKYYTFMK---PYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSP------LQSYNFALSS 321 (861)
T ss_dssp HHHHHGGGCH---HHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCS------CCCCCHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCc------hhhHHHHHHH
Confidence 7766654332 2344 67788888888888999999999999988754210000000 0000 0001234667
Q ss_pred HHHHHHHHHhhccCCCCCCCCChhhhHHHHHHHHHhhHHHHHhhhccChHHHHHHHHHHHHHhhhhcCCCCCCcchhhHH
Q 002148 377 YESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAA 456 (959)
Q Consensus 377 ~~~Ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~d~l~~~~~il~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~ 456 (959)
+..+++.++..+..+++. +++ +++ ..|+...+++..++..+| +.++..+.+.+.+.+. +.+|+.+|++
T Consensus 322 ~~~il~~ll~~l~~~~~d-~~d----~~~-~~r~~a~~~L~~l~~~~~-~~~~~~l~~~l~~~l~-----~~~~~~r~~a 389 (861)
T 2bpt_A 322 IKDVVPNLLNLLTRQNED-PED----DDW-NVSMSAGACLQLFAQNCG-NHILEPVLEFVEQNIT-----ADNWRNREAA 389 (861)
T ss_dssp HHHHHHHHHHHTTCCCCC--CC----CCC-HHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHTT-----CSSHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccc-ccc----ccC-cHHHHHHHHHHHHHHHcc-HhHHHHHHHHHHHHcC-----CCChhHHHHH
Confidence 788899998888876531 111 223 467888889988888877 4577777777776642 4679999999
Q ss_pred HHHHHHhhcccC-CccccchHHHhhhccC-C-CCcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccCCCHHH
Q 002148 457 LFCIRAISTYVS-VVEAEVMPQVMALLPK-L-PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDT 533 (959)
Q Consensus 457 l~~l~~l~e~~~-~~~~~~l~~l~~~l~~-l-p~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~~v 533 (959)
+++++.+++++. ..-.++++.++..+.. + ..++.||.++++++|++++++..+-....+++.+++.++.+++++.++
T Consensus 390 ~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~v 469 (861)
T 2bpt_A 390 VMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKV 469 (861)
T ss_dssp HHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccChHH
Confidence 999999998875 2223455666665433 2 248999999999999999999764100137889999998888776559
Q ss_pred HHHHHHHHHHHHHHhh----hhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhh
Q 002148 534 AAAAALAFRHICDDCR----KKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLP 609 (959)
Q Consensus 534 ~~~A~~al~~lc~~c~----~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p 609 (959)
+..|+.++..+|+.|. ..+.||++.++..+...+... ..+...|..++++++.++...+. +..+++..++.+
T Consensus 470 ~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~---d~~~~vr~~a~~al~~l~~~~~~-~~~~~~~~l~~~ 545 (861)
T 2bpt_A 470 ATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRI---DNEFNARASAFSALTTMVEYATD-TVAETSASISTF 545 (861)
T ss_dssp HHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCS---CCGGGHHHHHHHHHHHHHHHCCG-GGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCc---CcchHHHHHHHHHHHHHHHHcch-hhHHHHHHHHHH
Confidence 9999999999999986 668899999999998888642 12356788999999999999885 356788889999
Q ss_pred hHHHHHHHHhcCCC--c-ccccCchh-hhHHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcccHHHHHHHHHHH
Q 002148 610 VVTPLQEIINQGPE--I-LQKKHPRD-LTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRAC 685 (959)
Q Consensus 610 ~~~~l~~~~~~~~~--~-~~~~~~~~-~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l 685 (959)
+++.+...+.-... . ++++.... ....+++++.+++.++. .+.++...++|.+..++.....+ .+.+.++.++
T Consensus 546 l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~~~~l~~~l~~~l~~~~~~-~v~~~~~~~l 622 (861)
T 2bpt_A 546 VMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS--SVEPVADMLMGLFFRLLEKKDSA-FIEDDVFYAI 622 (861)
T ss_dssp HHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG--GTGGGHHHHHHHHHHHHHSTTGG-GTHHHHHHHH
T ss_pred HHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHccCCCC-cHHHHHHHHH
Confidence 99888876321100 0 00000111 12456778888777653 34455667788777777654322 6789999999
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHhhcCC---cchhHhHHHHHHHhCCCccchHHHHHHHHHHHHHHHHhhcCcccCC
Q 002148 686 KYAVRTSKRFMGITIGAILEEIQGLYQQHQQ---PCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFT 762 (959)
Q Consensus 686 ~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~---~~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~ 762 (959)
..+....|..+.++++.++..+...+..... ...+.+++.++...|.. ..+.+..++ ...+..+.. .+
T Consensus 623 ~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~l~----~~l~~~l~~---~~ 693 (861)
T 2bpt_A 623 SALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEED--FRRYSDAMM----NVLAQMISN---PN 693 (861)
T ss_dssp HHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGG--GHHHHHHHH----HHHHHHHHC---TT
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchh--ccchHHHHH----HHHHHHhCC---cc
Confidence 9988889998899999999988887753211 23567778888777743 444444433 333444441 22
Q ss_pred CCCCcHHHHHHHHHHHHhhCCCcccCcCChHHHHHHHHHhcc
Q 002148 763 SRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGIT 804 (959)
Q Consensus 763 ~~pDl~~~~f~l~~~~~~~~p~~~l~s~~l~~~~~~~~~~l~ 804 (959)
.+++++...+..++.++++.+..|.+ +++.++...+.++.
T Consensus 694 ~~~~vr~~~~~~l~~l~~~~~~~~~~--~l~~~l~~l~~~~~ 733 (861)
T 2bpt_A 694 ARRELKPAVLSVFGDIASNIGADFIP--YLNDIMALCVAAQN 733 (861)
T ss_dssp CCTTHHHHHHHHHHHHHHHHGGGGHH--HHHHHHHHHHHHHT
T ss_pred ccHhhhHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHHh
Confidence 45899999999999999987765543 45566665555554
No 11
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=7.6e-29 Score=310.62 Aligned_cols=693 Identities=12% Similarity=0.114 Sum_probs=467.3
Q ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHhcC--hhhHHHHHHHhccCCCChhHHHHHHHHHHhhhh-----------cCC
Q 002148 6 TVKEALNALYHHPDDAVRMQADRWLQDFQHT--IDAWQVADNLLHDATSNLETLIFCSQTLRSKVQ-----------RDV 72 (959)
Q Consensus 6 ~v~~av~~l~~~~d~~~r~~A~~~L~~~q~s--~~aw~~~~~lL~~~~~~~~~~~faa~~L~~ki~-----------~~w 72 (959)
++.+++..++ ++|++.|++|+++|++++++ ++.|..+.+++.+++.+..+|++|+++|++.+. .+|
T Consensus 2 ~l~~~L~~~~-s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w 80 (876)
T 1qgr_A 2 ELITILEKTV-SPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW 80 (876)
T ss_dssp CHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred cHHHHHHHhc-CCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhh
Confidence 3567777775 67999999999999999987 999999999998755678999999999999885 458
Q ss_pred CCCChhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccc-cccCCccchHHHHHhcCCC--C-CchhhHHHHh
Q 002148 73 EELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISA-EDWGGGGIVNWLRDEMNSH--P-EFVPGFLELL 148 (959)
Q Consensus 73 ~~l~~~~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~-~~Wp~~~~~~~l~~~l~~~--~-~~~~~~L~~L 148 (959)
..++++.+..+|+.+++.+.. .+..+ ++++.+++.++...++ +.||+ +++.+.+.+.+. . ......+..|
T Consensus 81 ~~l~~~~~~~ik~~ll~~l~~---~~~~~-~~~~~~l~~i~~~~~~~~~w~~--ll~~l~~~l~~~~~~~~~r~~al~~l 154 (876)
T 1qgr_A 81 LAIDANARREVKNYVLHTLGT---ETYRP-SSASQCVAGIACAEIPVNQWPE--LIPQLVANVTNPNSTEHMKESTLEAI 154 (876)
T ss_dssp HTSCHHHHHHHHHHHHHHTTT---CCSSS-CHHHHHHHHHHHHHGGGTCCTT--HHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhCC---CcHHH-HHHHHHHHHHHHhhCcccccHH--HHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 899999999999999998865 34456 9999999999988765 79998 999999888654 2 3456788888
Q ss_pred cccccccccccccCChhHHHHHHHHHHHhHHHHHHHHHHhhhhh----HhHHHHHHHHHHHHhccCCCCCcccccchhHH
Q 002148 149 TVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN----ELKEQVLEAFASWLRLKHRIPGSVLASHPLVL 224 (959)
Q Consensus 149 ~~l~EE~~~~~~~l~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~----~~~~~~l~~~~sWi~~~~~~~~~~~~~~~ll~ 224 (959)
..+++++.. +.+....+.++..+...+.++ +++..+++|+..|+.+. +.+ +.
T Consensus 155 ~~l~~~~~~--------------~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~---~~~-~~------ 210 (876)
T 1qgr_A 155 GYICQDIDP--------------EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT---KAN-FD------ 210 (876)
T ss_dssp HHHHHHSCH--------------HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC---HHH-HT------
T ss_pred HHHHHhcCH--------------hhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH---HHH-HH------
Confidence 888887531 114456677777777766643 57888899998887641 100 00
Q ss_pred HHHhcCCCCchHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhhhcCCCHHHHHHHHHHHHHhhhHHH
Q 002148 225 TALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYV 304 (959)
Q Consensus 225 ~~~~~L~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~l~~~~~d~e~~~~l~~l~~~~~~~~~ 304 (959)
. ......+++.+. ..+ .+.|++.....++++..+++.+.
T Consensus 211 -----------------------------------~-~~~~~~il~~l~---~~~--~~~~~~vr~~a~~~l~~l~~~~~ 249 (876)
T 1qgr_A 211 -----------------------------------K-ESERHFIMQVVC---EAT--QCPDTRVRVAALQNLVKIMSLYY 249 (876)
T ss_dssp -----------------------------------S-HHHHHHHHHHHH---HHT--TCSSHHHHHHHHHHHHHHHHHSG
T ss_pred -----------------------------------h-HHHHHHHHHHHH---HHc--CCCCHHHHHHHHHHHHHHHHHhH
Confidence 0 000000111110 111 23344444556666666666554
Q ss_pred HHHhcCCchHH-HHHHHHHhhccCCCcchhhhhHHhHHHhHHHHhhcc--cc--cccCcccchHHHHHHHHhhhHHHHHH
Q 002148 305 ELIATGSDESM-LIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRD--SY--ISFGNEASAEAERSRRLQVFRSAYES 379 (959)
Q Consensus 305 ~~l~~~~~~~~-~~l~~ll~~~~~~~~~v~~~~l~fW~~l~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (959)
..+. +.+. .+++.++.....+++++...+++||..+.+...... .. ...+.+|. .......++++.+
T Consensus 250 ~~~~---~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 321 (876)
T 1qgr_A 250 QYME---TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPE-----HTSKFYAKGALQY 321 (876)
T ss_dssp GGCH---HHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCS-----SCCCCHHHHHHHH
T ss_pred HHHH---HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCcc-----chhHHHHHHHHHH
Confidence 3332 2333 578888888888889999999999999887532100 00 00000000 0011234556677
Q ss_pred HHHHHHhhccCCCCCCCCChhhhHHHHHHHHHhhHHHHHhhhccChHHHHHHHHHHHHHhhhhcCCCCCCcchhhHHHHH
Q 002148 380 LVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFC 459 (959)
Q Consensus 380 Ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~d~l~~~~~il~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~ 459 (959)
++..++..+...++.+ ++ +++ ..|+...+++..++..+| +.++..+.+.+.+.+. +.+|+.+++++++
T Consensus 322 ll~~ll~~l~~~~~d~--~~---~~~-~~r~~a~~~l~~l~~~~~-~~~~~~~l~~l~~~l~-----~~~~~~r~~a~~~ 389 (876)
T 1qgr_A 322 LVPILTQTLTKQDEND--DD---DDW-NPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIK-----NPDWRYRDAAVMA 389 (876)
T ss_dssp HHHHHHHHTTCCCSSC--CT---TCC-CHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHTT-----CSSHHHHHHHHHH
T ss_pred HhHHHHHHhhcccccc--cc---ccc-HHHHHHHHHHHHHHHHCc-HhhHHHHHHHHHHHcc-----CCChHHHHHHHHH
Confidence 8888887776543211 11 122 467788888888887777 4567777777766532 5789999999999
Q ss_pred HHHhhcccCCc-cccchHHHhhhccC-C-CCcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccCCCHHHHHH
Q 002148 460 IRAISTYVSVV-EAEVMPQVMALLPK-L-PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAA 536 (959)
Q Consensus 460 l~~l~e~~~~~-~~~~l~~l~~~l~~-l-p~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~~v~~~ 536 (959)
++.+++++.++ -.++++.++..+.. + .+++.||.++++++|++++++........+++.+++.++.++.++.+++..
T Consensus 390 l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~v~~~ 469 (876)
T 1qgr_A 390 FGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASN 469 (876)
T ss_dssp HHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999988632 23455666665433 2 248999999999999999998762101127899999999999876569999
Q ss_pred HHHHHHHHHHHhh--------------hhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHH
Q 002148 537 AALAFRHICDDCR--------------KKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKA 602 (959)
Q Consensus 537 A~~al~~lc~~c~--------------~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~ 602 (959)
|+.++..+++.++ ..+.||++.++..+.+.+...+. -....+..++++++.++...+. +..++
T Consensus 470 a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~--~~~~~r~~~~~~l~~l~~~~~~-~~~~~ 546 (876)
T 1qgr_A 470 VCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDG--HQNNLRSSAYESLMEIVKNSAK-DCYPA 546 (876)
T ss_dssp HHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSS--CSTTHHHHHHHHHHHHHHTCCS-TTHHH
T ss_pred HHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCc--chhhHHHHHHHHHHHHHHHCch-hhHHH
Confidence 9999999999887 34889999999999998864311 1234577899999999999885 45678
Q ss_pred HHHhhhhhHHHHHHHHhcCCCc-ccccC--chhh-hHHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcccHHHH
Q 002148 603 LEMLCLPVVTPLQEIINQGPEI-LQKKH--PRDL-TVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTM 678 (959)
Q Consensus 603 l~~ll~p~~~~l~~~~~~~~~~-~~~~~--~~~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~i~ 678 (959)
+..++.++++.+...+.-.... .+++. ...+ ...+.+++.+.+.++. ..+.+++..++|.+..++....+...+.
T Consensus 547 ~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~l~~~l~~~l~~~~~~~~v~ 625 (876)
T 1qgr_A 547 VQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQH-QDALQISDVVMASLLRMFQSTAGSGGVQ 625 (876)
T ss_dssp HHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCH-HHHHTTHHHHHHHHHHHC-----CCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhCh-hhhhHHHHHHHHHHHHHHHhccCCCCcc
Confidence 8899999998888764321110 00000 0111 2245677777765541 3344556677777766665432223678
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCC----cchhHhHHHHHHHhCCCccchHHHHHHHHHHHHHHHHh
Q 002148 679 ESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQ----PCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCL 754 (959)
Q Consensus 679 e~~~~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~----~~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~ 754 (959)
+.++.++..++...|..+.|+++.++..+...+..... ...+++++.++...|.. +.+.+..+ +...+..
T Consensus 626 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~i----~~~l~~~ 699 (876)
T 1qgr_A 626 EDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSN--IIPFCDEV----MQLLLEN 699 (876)
T ss_dssp HHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGG--GHHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHh--hhhhHHHH----HHHHHHH
Confidence 88999999988888888889999888888777765422 23577888888887743 44444433 3334444
Q ss_pred hcCcccCCCCCCcHHHHHHHHHHHHhhCCCcccCcCChHHHHHHHHHhccC
Q 002148 755 LTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITV 805 (959)
Q Consensus 755 l~~~~~~~~~pDl~~~~f~l~~~~~~~~p~~~l~s~~l~~~~~~~~~~l~~ 805 (959)
+.. .+.+++++...+..++.+....+..+.+ +++.++.....++..
T Consensus 700 l~~---~~~~~~~~~~~~~~l~~i~~~~g~~~~~--~l~~~~~~l~~~~~~ 745 (876)
T 1qgr_A 700 LGN---ENVHRSVKPQILSVFGDIALAIGGEFKK--YLEVVLNTLQQASQA 745 (876)
T ss_dssp HTC---TTSCGGGHHHHHHHHHHHHHHHGGGGGG--GHHHHHHHHHHHHTC
T ss_pred hCC---ccccHHhhHHHHHHHHHHHHHhchhHHH--HHHHHHHHHHHHHhc
Confidence 441 1235679999999999999876655443 567777766655543
No 12
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.91 E-value=5.7e-23 Score=237.06 Aligned_cols=431 Identities=13% Similarity=0.143 Sum_probs=299.2
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHhc--ChhhHHHHHHHhccCCCChhHHHHHHHHHHhhhhcC-----------CC
Q 002148 7 VKEALNALYHHPDDAVRMQADRWLQDFQH--TIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRD-----------VE 73 (959)
Q Consensus 7 v~~av~~l~~~~d~~~r~~A~~~L~~~q~--s~~aw~~~~~lL~~~~~~~~~~~faa~~L~~ki~~~-----------w~ 73 (959)
+.+++..++ ++|++.|++|+++|+++++ .|+.|..+.+++.+++.+.++|++|+++|++.++++ |.
T Consensus 3 l~~~L~~~~-s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~ 81 (462)
T 1ibr_B 3 LITILEKTV-SPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWL 81 (462)
T ss_dssp HHHHHHHTT-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhh
Confidence 567777765 6799999999999999998 599999999999875567899999999999999887 57
Q ss_pred CCChhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccc-cccCCccchHHHHHhcCCC---CCchhhHHHHhc
Q 002148 74 ELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISA-EDWGGGGIVNWLRDEMNSH---PEFVPGFLELLT 149 (959)
Q Consensus 74 ~l~~~~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~-~~Wp~~~~~~~l~~~l~~~---~~~~~~~L~~L~ 149 (959)
.++++.+..+|+.|++.+.. .+..+ ++++.+++.++.+.++ +.||+ +++.+++.++++ +......+.+|.
T Consensus 82 ~l~~~~~~~ik~~ll~~l~~---~~~~v-~~~~~~i~~ia~~~~~~~~w~~--ll~~L~~~l~~~~~~~~~r~~al~~l~ 155 (462)
T 1ibr_B 82 AIDANARREVKNYVLQTLGT---ETYRP-SSASQCVAGIACAEIPVNQWPE--LIPQLVANVTNPNSTEHMKESTLEAIG 155 (462)
T ss_dssp TSCHHHHHHHHHHHHHHTTC---CCSSS-CSHHHHHHHHHHHHGGGTCCTT--HHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCC---CCchh-hHHHHHHHHHHHHhccccccHH--HHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 89999999999999998765 44556 9999999999998876 48998 999999988764 234678899999
Q ss_pred ccccccccccccCChhHHHHHHHHHHHhHHHHHHHHHHhhhhh----HhHHHHHHHHHHHHhccCCCCCcccccchhHHH
Q 002148 150 VLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN----ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLT 225 (959)
Q Consensus 150 ~l~EE~~~~~~~l~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~----~~~~~~l~~~~sWi~~~~~~~~~~~~~~~ll~~ 225 (959)
.++++..... +..+.+.++..+...+.++ +++..+++|+.+|+.+. ..+ ..
T Consensus 156 ~l~~~~~~~~--------------~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~---~~~-~~------- 210 (462)
T 1ibr_B 156 YICQDIDPEQ--------------LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT---KAN-FD------- 210 (462)
T ss_dssp HHHHHSCGGG--------------TGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTT---HHH-HT-------
T ss_pred HHHHhCCchh--------------hHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH---HHh-hh-------
Confidence 9998863211 2334556777776666543 57888999999887641 000 00
Q ss_pred HHhcCCCCchHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhhhcCCCHHHHHHHHHHHHHhhhHHHH
Q 002148 226 ALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVE 305 (959)
Q Consensus 226 ~~~~L~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~l~~~~~d~e~~~~l~~l~~~~~~~~~~ 305 (959)
+. ...++ +++.+ .. . ..+.+++.....++++..+++.+..
T Consensus 211 -------~~-------------------------~~~~~---l~~~l---~~-~-~~~~~~~vr~~~~~~l~~l~~~~~~ 250 (462)
T 1ibr_B 211 -------KE-------------------------SERHF---IMQVV---CE-A-TQCPDTRVRVAALQNLVKIMSLYYQ 250 (462)
T ss_dssp -------SH-------------------------HHHHH---HHHHH---HH-H-TTCSSHHHHHHHHHHHHHHHHHCGG
T ss_pred -------hh-------------------------HHHHH---HHHHH---HH-h-cCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 00 00011 11111 11 1 1244556667788888888887765
Q ss_pred HHhcCCchHH-HHHHHHHhhccCCCcchhhhhHHhHHHhHHHHhhccccccc---CcccchHHHHHHHHhhhHHHHHHHH
Q 002148 306 LIATGSDESM-LIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISF---GNEASAEAERSRRLQVFRSAYESLV 381 (959)
Q Consensus 306 ~l~~~~~~~~-~~l~~ll~~~~~~~~~v~~~~l~fW~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Ll 381 (959)
.+. +.+. .+++.++.+....++++...+++||..+.+.......+..- +..+.. ......+++++..++
T Consensus 251 ~~~---~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~ 323 (462)
T 1ibr_B 251 YME---TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPE----HTSKFYAKGALQYLV 323 (462)
T ss_dssp GCT---TTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSS----CCCCCHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCcc----chhHHHHHHHhhhcc
Confidence 443 2344 67788888777888999999999999988764211000000 000000 011234566777888
Q ss_pred HHHHhhccCCCCCCCCChhhhHHHHHHHHHhhHHHHHhhhccChHHHHHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHH
Q 002148 382 SLVSFRVQYPQDYQDLSLEDLKEFKHTRYAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIR 461 (959)
Q Consensus 382 ~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~d~l~~~~~il~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~ 461 (959)
+.++..+.-.++ +.++ +++ ..|+...+++..++..+| +.++..+.+.+.+.+. +.+|+.+++++++++
T Consensus 324 p~l~~~l~~~d~-d~~~----~~~-~~r~~a~~~L~~l~~~~~-~~~~~~~~~~l~~~l~-----~~~~~~r~aal~~l~ 391 (462)
T 1ibr_B 324 PILTQTLTKQDE-NDDD----DDW-NPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIK-----NPDWRYRDAAVMAFG 391 (462)
T ss_dssp HHHHHHTTCCCS-SCCT----TCC-SHHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHHTT-----CSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhccc-cccc----ccc-hHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhc-----CCChHHHHHHHHHHH
Confidence 888776654322 1111 111 468888899999998888 5688888888877642 578999999999999
Q ss_pred HhhcccCCc-cccchHHHhhhccC-C-CCcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccC
Q 002148 462 AISTYVSVV-EAEVMPQVMALLPK-L-PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMS 528 (959)
Q Consensus 462 ~l~e~~~~~-~~~~l~~l~~~l~~-l-p~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~ 528 (959)
++++++..+ -.+.++.++..+.. + ..|+.||.++++++|++++|+...-....+++++++.++.+++
T Consensus 392 ~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 392 CILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp HTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC--
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHhc
Confidence 999987633 23445555555433 2 2489999999999999999998731001389999999988764
No 13
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.77 E-value=1.2e-14 Score=180.57 Aligned_cols=622 Identities=12% Similarity=0.095 Sum_probs=378.8
Q ss_pred HhHHHHHHHHHHHHhccCCCCCcccccchhHHHHHhcCCCC--chHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHH
Q 002148 193 ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSE--ILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVP 270 (959)
Q Consensus 193 ~~~~~~l~~~~sWi~~~~~~~~~~~~~~~ll~~~~~~L~~~--~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~ 270 (959)
.++..+..|+..-.... +.+ ...++++.+++.++++ ..+..|+.++..++.........+ .....+..+++
T Consensus 105 ~vr~~~a~~i~~ia~~~---~~~--~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~--~~~~~~~~il~ 177 (852)
T 4fdd_A 105 LIRATVGILITTIASKG---ELQ--NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSD--VLDRPLNIMIP 177 (852)
T ss_dssp HHHHHHHHHHHHHHHHT---TTT--TCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHC--SSSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc---Ccc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchh--hhcchHHHHHH
Confidence 46667777766554431 111 2356888888888765 467889999999886543210000 00012334444
Q ss_pred HHHhhHHHhhhcCCCHHHHHHHHHHHHHhhhHHHHHHhcCCchHHHHHHHHHhhccCCCcchhhhhHHhHHHhHHHHhhc
Q 002148 271 QIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKR 350 (959)
Q Consensus 271 ~v~~l~~~l~~~~~d~e~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~l~~ll~~~~~~~~~v~~~~l~fW~~l~~~~~~~ 350 (959)
.+... + .+.+.+.....++.+..+.......+. +....+++.++.....++.++...++.-+..+.+...
T Consensus 178 ~l~~~---l--~~~~~~vR~~A~~aL~~~~~~~~~~~~---~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~-- 247 (852)
T 4fdd_A 178 KFLQF---F--KHSSPKIRSHAVACVNQFIISRTQALM---LHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRM-- 247 (852)
T ss_dssp HHTTT---T--TCSSHHHHHHHHHHHHTTTTTTCHHHH---TSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCH--
T ss_pred HHHHH---h--cCCCHHHHHHHHHHHHHHHhcccHHHH---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCH--
Confidence 43321 1 133444444444455444322111111 2345678888888888888888888887766654321
Q ss_pred ccccccCcccchHHHHHHHHhhhHHHHHHHHHHHHhhccCCCCCCCCChhhhHHHHHHHHHhhHHHHHhhhc------cC
Q 002148 351 DSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYAVADVLIDAASV------LG 424 (959)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~d~l~~~~~i------l~ 424 (959)
..+.|++..+++.++.-+.-+ + + +.|....+++..++.. +.
T Consensus 248 --------------------~~~~~~l~~l~~~l~~~~~~~------~-~------~vr~~a~e~l~~l~~~~~~~~~~~ 294 (852)
T 4fdd_A 248 --------------------DRLLPHMHNIVEYMLQRTQDQ------D-E------NVALEACEFWLTLAEQPICKDVLV 294 (852)
T ss_dssp --------------------HHHGGGHHHHHHHHHHHHTCS------S-H------HHHHHHHHHHHHHTTSTTHHHHHT
T ss_pred --------------------HHHHHHHHHHHHHHHHHccCC------c-H------HHHHHHHHHHHHHhcchhHHHHHH
Confidence 233455556666665543211 1 1 2344454555444321 11
Q ss_pred hHHHHHHHHHHHHHhhh----------hc--CC-CC----CCcchhhHHHHHHHHhhcccCCccccchHHHhhhccC-C-
Q 002148 425 GDATLKILYIKFVEGVA----------CC--GN-KH----NEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPK-L- 485 (959)
Q Consensus 425 ~~~~l~~l~~~l~~~~~----------~~--~~-~~----~~w~~~Ea~l~~l~~l~e~~~~~~~~~l~~l~~~l~~-l- 485 (959)
+ ++..+.+.+.+.+. +. .. .. .+|.-..++.-+++.+++..+ +..++.+++.+.+ +
T Consensus 295 ~--~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~---~~~~~~l~~~l~~~l~ 369 (852)
T 4fdd_A 295 R--HLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR---DELLPHILPLLKELLF 369 (852)
T ss_dssp T--THHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHHT
T ss_pred H--HHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHhc
Confidence 1 22233333322210 00 00 01 679989999999999998775 2456666666543 2
Q ss_pred CCcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhh-hhhCCHHHHHHHH
Q 002148 486 PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRK-KLCGYLDGLYNVY 563 (959)
Q Consensus 486 p~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~lc~~c~~-~L~~~~~~ll~~~ 563 (959)
..++.+|.+++..+|.+++.....-. .+++.+++.++..+.+++ .|+..|+.++.++++.+.. ...++++.++..+
T Consensus 370 ~~~~~~R~aa~~alg~i~~~~~~~~~--~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L 447 (852)
T 4fdd_A 370 HHEWVVKESGILVLGAIAEGCMQGMI--PYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTEL 447 (852)
T ss_dssp CSSHHHHHHHHHHHHHTTTTTHHHHG--GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcchHHHH--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 24799999999999999876543211 278899999999998764 4999999999999998765 3568899999888
Q ss_pred HHHhhccCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHH
Q 002148 564 RTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYI 643 (959)
Q Consensus 564 ~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 643 (959)
...+.. -+...|.....+++.++...+.+ ..++ +.+++..+..++.... .+.....+++++.+
T Consensus 448 ~~~L~d-----~~~~vr~~a~~aL~~l~~~~~~~-l~~~----l~~ll~~L~~~l~~~~-------~~~~~~~~~ai~~l 510 (852)
T 4fdd_A 448 LKRILD-----SNKRVQEAACSAFATLEEEACTE-LVPY----LAYILDTLVFAFSKYQ-------HKNLLILYDAIGTL 510 (852)
T ss_dssp HHHHTC-----SSHHHHHHHHHHHHHHHHHHGGG-GGGG----HHHHHHHHHHHHHHCC-------HHHHHHHHHHHHHH
T ss_pred HHHHhC-----CCHHHHHHHHHHHHHHHHHhhHh-hHhH----HHHHHHHHHHHHHHhC-------hHHHHHHHHHHHHH
Confidence 887753 24678999999999998765432 3344 4444555555554332 12333456777777
Q ss_pred hhhcCCcccHHHHHHHHhHHHHHHHHhhcc-cHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhc--------
Q 002148 644 FRYVNHPEAVADAIQRLWPIFKAIFDIRAW-DMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQH-------- 714 (959)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~l~~il~~~~~-~~~i~e~~~~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~~-------- 714 (959)
+...+..-...+++..++|.+........+ +.++ ..+++++..+...+|..+.|++++++..+...+...
T Consensus 511 ~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~-~~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~ 589 (852)
T 4fdd_A 511 ADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDL-FPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNN 589 (852)
T ss_dssp HHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTH-HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHH-HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 766553222245778899988877665543 3444 478899999999999988888888777554443321
Q ss_pred --C------C----cchhHhHHHHHHHhCCCccchHHHHHHHHHHHHHHHHhhcCcccCCCCCCcHHHHHHHHHHHHhhC
Q 002148 715 --Q------Q----PCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYC 782 (959)
Q Consensus 715 --~------~----~~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pDl~~~~f~l~~~~~~~~ 782 (959)
+ . .+.+++++.++..+|.+ +.+.+.+ ..++...+..+. +..++++++.+.+++.+.+.+
T Consensus 590 ~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~--~~~~~~~--~~~~~~l~~~l~-----~~~~~vr~~a~~~l~~l~~~~ 660 (852)
T 4fdd_A 590 AQPDQYEAPDKDFMIVALDLLSGLAEGLGGN--IEQLVAR--SNILTLMYQCMQ-----DKMPEVRQSSFALLGDLTKAC 660 (852)
T ss_dssp HCTTTSCCCCTHHHHHHHHHHHHHHHHHGGG--GHHHHHT--CCHHHHHHHHTT-----CSSHHHHHHHHHHHHHHHHHC
T ss_pred cCCcccCCCcchHHHHHHHHHHHHHHHHhHh--HHHHhcC--CcHHHHHHHHhC-----CCChhHHHHHHHHHHHHHHHh
Confidence 1 1 23468889999988854 4343310 112233333333 345889999999999999988
Q ss_pred CCcccCcCChHHHHHHHHHhccCCCchhHHHHHHHHHHhhcCcCCCCchhhHHHHHHHHhhccHHHHHHHHHHccc-CCC
Q 002148 783 PQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITRILIASLTG-ALP 861 (959)
Q Consensus 783 p~~~l~s~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~l~~-~~~ 861 (959)
+..+.+ +++.++......+...++...+.++..+..+...... + +.++-..++..++..+.. ..+
T Consensus 661 ~~~~~~--~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~-~-----------~~p~~~~il~~L~~~l~~~~~~ 726 (852)
T 4fdd_A 661 FQHVKP--CIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGI-E-----------MQPYIPMVLHQLVEIINRPNTP 726 (852)
T ss_dssp GGGTGG--GHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGG-G-----------GGGGTHHHHHHHHHHHTCSSCC
T ss_pred hHHHHH--HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhH-h-----------HHHHHHHHHHHHHHHhCCCCCC
Confidence 876554 6778888888888777777777788777777643211 1 223333445555544422 345
Q ss_pred CCCcccHHHHHHHHHHHhhHHHHHHHHHHH----hhCCCCCCCHHHHHHHHHHHHH
Q 002148 862 SSRLETVTYALLALTRAYGVRSLEWAKESV----SLIPLTALAEVERSRFLQALSE 913 (959)
Q Consensus 862 ~~~~~~~a~il~~l~~~~~~~~~~wl~~~l----~~~p~~~~~~~~~~~f~~~l~~ 913 (959)
++..++.+..+..+...+|+....++.+++ ..+|.. -+.++|+.-.+.+..
T Consensus 727 ~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~-~d~~e~~~a~~~l~~ 781 (852)
T 4fdd_A 727 KTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNI-RDNEEKDSAFRGICT 781 (852)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTS-CSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhccc-cccHHHHHHHHHHHH
Confidence 677888999999999998876544444433 345532 245556665555444
No 14
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.76 E-value=1.6e-15 Score=195.96 Aligned_cols=667 Identities=11% Similarity=0.093 Sum_probs=393.5
Q ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCh----------hhHHHHHHHhccCCCChhHHHHHHHHHHhhhhcCCC
Q 002148 4 QNTVKEALNALYHHPDDAVRMQADRWLQDFQHTI----------DAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVE 73 (959)
Q Consensus 4 ~~~v~~av~~l~~~~d~~~r~~A~~~L~~~q~s~----------~aw~~~~~lL~~~~~~~~~~~faa~~L~~ki~~~w~ 73 (959)
..++.+.+..+ .++|++.|.+|.+.|.+.-+.+ .........|. +.+.++|..|+..|.....
T Consensus 5 ~~~l~~lL~~l-~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~--d~~~~vR~~A~~~L~~l~~---- 77 (1230)
T 1u6g_C 5 SYHISNLLEKM-TSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE--DKNGEVQNLAVKCLGPLVS---- 77 (1230)
T ss_dssp CHHHHHHHHHT-TCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHHHT----
T ss_pred HhHHHHHHHhc-CCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHH----
Confidence 34577777776 5789999999988887664432 22333444454 4678899999999988765
Q ss_pred CCChhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhcccc---------ccCCccchHHHHHhcCCCC--Cchh
Q 002148 74 ELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAE---------DWGGGGIVNWLRDEMNSHP--EFVP 142 (959)
Q Consensus 74 ~l~~~~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~---------~Wp~~~~~~~l~~~l~~~~--~~~~ 142 (959)
.++++....+++.|+..+.. .+..+|...+.+|+.++...++. .|+. +++.+...+..++ ....
T Consensus 78 ~~~~~~~~~i~~~Ll~~l~d---~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~--llp~L~~~l~~~~~~~~~~ 152 (1230)
T 1u6g_C 78 KVKEYQVETIVDTLCTNMLS---DKEQLRDISSIGLKTVIGELPPASSGSALAANVCKK--ITGRLTSAIAKQEDVSVQL 152 (1230)
T ss_dssp TSCHHHHHHHHHHHHHHTTC---SSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHH--HHHHHHHHHSCCSCHHHHH
T ss_pred hCCHHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHH--HHHHHHHHHcCCCchHHHH
Confidence 34566667777777666543 45578999999999988776654 4887 8888888876322 2345
Q ss_pred hHHHHhcccccccccccccCChhHHHHHHHHHHHhHHHHHHHHHHhhhhh--HhHHHHHHHHHHHHhccCCCCCcccccc
Q 002148 143 GFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN--ELKEQVLEAFASWLRLKHRIPGSVLASH 220 (959)
Q Consensus 143 ~~L~~L~~l~EE~~~~~~~l~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~--~~~~~~l~~~~sWi~~~~~~~~~~~~~~ 220 (959)
..+++|..+++..... + ..+.+.++..+...+.++ .++..+++|+...+.. .+... .
T Consensus 153 ~al~~l~~~~~~~~~~---l------------~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~---~~~~~--~- 211 (1230)
T 1u6g_C 153 EALDIMADMLSRQGGL---L------------VNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMS---CGNIV--F- 211 (1230)
T ss_dssp HHHHHHHHHHHHTCSS---C------------TTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTT---C------C-
T ss_pred HHHHHHHHHHHHhHhH---H------------HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHh---cCHHH--H-
Confidence 5666666666544321 1 112344555544444442 3555566666555442 11100 0
Q ss_pred hhHHHHHhcCCCCchHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhhhcCCCHHHHHHHHHHHHHhh
Q 002148 221 PLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMG 300 (959)
Q Consensus 221 ~ll~~~~~~L~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~l~~~~~d~e~~~~l~~l~~~~~ 300 (959)
..++..+++. +..... .+.....+..+..++
T Consensus 212 -----------------------------------------~~~l~~l~~~-------L~~~~~-~~~r~~a~~~l~~l~ 242 (1230)
T 1u6g_C 212 -----------------------------------------VDLIEHLLSE-------LSKNDS-MSTTRTYIQCIAAIS 242 (1230)
T ss_dssp -----------------------------------------TTHHHHHHHH-------HHHTCS-SCSCTTHHHHHHHHH
T ss_pred -----------------------------------------HHHHHHHHHH-------hccCCc-hhHHHHHHHHHHHHH
Confidence 0112111111 111110 011112233333333
Q ss_pred hHHHHHHhcCCchHHHHHHHHHhhccCCCcchhhhhHHhHHHhHHHHhhcccccccCcccchHHHHHHHHhhhHHHHHHH
Q 002148 301 DSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESL 380 (959)
Q Consensus 301 ~~~~~~l~~~~~~~~~~l~~ll~~~~~~~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 380 (959)
......+. +....+++.++.....+++++...++..|..+.+... +.+.|++.++
T Consensus 243 ~~~~~~~~---~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~----------------------~~~~~~l~~l 297 (1230)
T 1u6g_C 243 RQAGHRIG---EYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCP----------------------KEVYPHVSTI 297 (1230)
T ss_dssp HHSSGGGT---TSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTT----------------------CCCHHHHHHH
T ss_pred HHhHHHHH---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHCh----------------------HHHHHhHHHH
Confidence 22211221 2445688888888887888888888888776665321 2356888999
Q ss_pred HHHHHhhccCCCCCCCCChhh--hHHHHHHHHHhhHHHHHhhhccChHHHHHHHHHHHHHhhhhcCCCCCCcchhhHHHH
Q 002148 381 VSLVSFRVQYPQDYQDLSLED--LKEFKHTRYAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALF 458 (959)
Q Consensus 381 l~~l~~k~~~p~d~~~~~~d~--~~~f~~~R~~~~d~l~~~~~il~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~ 458 (959)
++.+++.+.+++++. .++|+ .+++.+. + +.+...+ ....+.. .. +..|.-+++++-
T Consensus 298 i~~ll~~l~~d~~~~-~~~d~~~~~~~~~~----~----------~~~~~~~-~~~~~~~-----~~-d~~~~vR~~A~~ 355 (1230)
T 1u6g_C 298 INICLKYLTYDPNYN-YDDEDEDENAMDAD----G----------GDDDDQG-SDDEYSD-----DD-DMSWKVRRAAAK 355 (1230)
T ss_dssp HHHHTTCCCCC----------------------------------------------------------CTTHHHHHHHH
T ss_pred HHHHHHHhCCCCCCC-Cccccccccccccc----c----------cccchhh-ccccccc-----cc-ccCHHHHHHHHH
Confidence 999999998866431 11110 0001100 0 0000000 0000000 11 567998999999
Q ss_pred HHHHhhcccCCccccchHHHhhhccC-CC-CcHHHHHHHHHHHHhhhhHHhhC---------------C--CChhhHHHH
Q 002148 459 CIRAISTYVSVVEAEVMPQVMALLPK-LP-QQPQLLQTVCLTIGAYSKWFDAA---------------S--SDPSILASV 519 (959)
Q Consensus 459 ~l~~l~e~~~~~~~~~l~~l~~~l~~-lp-~~~~v~~t~~~~ig~y~~~l~~~---------------p--~~~~~l~~~ 519 (959)
++..++...+..-.++++.++..+.. +. .|+.+|..++..++....-.... + ....+++.+
T Consensus 356 ~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 435 (1230)
T 1u6g_C 356 CLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNI 435 (1230)
T ss_dssp HHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHH
T ss_pred HHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHH
Confidence 99999885443223344444444433 32 37788888888777665432210 0 001356777
Q ss_pred HHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCChHH
Q 002148 520 LSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVD 598 (959)
Q Consensus 520 l~~l~~~l~~~~-~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~ 598 (959)
++.+.+.+++++ +++..++.++..+++.++..+.+|++.++..+...+..+ .-..+.+...+..++.++...+++.
T Consensus 436 l~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~---~~~~~v~~~a~~~l~~~~~~~~~~~ 512 (1230)
T 1u6g_C 436 VKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDK---SSSSNLKIDALSCLYVILCNHSPQV 512 (1230)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCS---SSCHHHHHHHHHHHHHHHHSSCGGG
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCC---CCcchHHHHHHHHHHHHHHhCCHHH
Confidence 777777787653 478889999999999998888899999999999988642 1134678888888888888777766
Q ss_pred HHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCC-----cccHHHHHHHHhHHHHHHHHhhcc
Q 002148 599 AKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNH-----PEAVADAIQRLWPIFKAIFDIRAW 673 (959)
Q Consensus 599 ~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-----~~~~~~~~~~~~~~l~~il~~~~~ 673 (959)
..+++..++..++. .+... ..+.....+..++.+++.++. +..+.+++..++|.+...+.....
T Consensus 513 ~~~~l~~llp~L~~----~l~d~-------~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~ 581 (1230)
T 1u6g_C 513 FHPHVQALVPPVVA----CVGDP-------FYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADI 581 (1230)
T ss_dssp GHHHHTTTHHHHHH----HHTCS-------SHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSS
T ss_pred HHhHHHHHHHHHHH----HHccc-------chHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCC
Confidence 66777666666554 33321 111113356777777766543 345677888999988777765566
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCC-cchhHhHHHHHHHhCCCccchHHHHHHHHHHHHHHH
Q 002148 674 DMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQ-PCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTT 752 (959)
Q Consensus 674 ~~~i~e~~~~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~-~~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~ 752 (959)
+.++++.+..+++.++...|..+.+++|.++..+......... ...+..++.+...-++. +..+.+..++. ...
T Consensus 582 ~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~-~~~~~~~~i~~----~L~ 656 (1230)
T 1u6g_C 582 DQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKI-DLRPVLGEGVP----ILA 656 (1230)
T ss_dssp CHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCC-CCHHHHHHHHH----HHH
T ss_pred CHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHhCcccc-chHHHHHHHHH----HHH
Confidence 7789999999999999999988888889998887765543210 12233444433221111 12333333322 222
Q ss_pred HhhcCcccCCCCCCcHHHHHHHHHHHHhhCCCcccCcCChHHHHHHHHHhccCCCchhHHHHHHHHHHhhcC
Q 002148 753 CLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDL 824 (959)
Q Consensus 753 ~~l~~~~~~~~~pDl~~~~f~l~~~~~~~~p~~~l~s~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~li~~ 824 (959)
..+. +++++++......+.++++.++..+ ..+.+..++......+.-.+.+....++.+|..++..
T Consensus 657 ~~l~-----~~~~~~r~~a~~al~~l~~~~~~~~-~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~ 722 (1230)
T 1u6g_C 657 SFLR-----KNQRALKLGTLSALDILIKNYSDSL-TAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKV 722 (1230)
T ss_dssp HHTT-----SCCHHHHHHHHHHHHHHHHHCCTTC-CHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTS
T ss_pred HHHH-----hCCHHHHHHHHHHHHHHHhcccccC-CHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHh
Confidence 2332 4567799999999999999988654 2222333332222333445666788999999999854
No 15
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=99.72 E-value=2.3e-15 Score=155.36 Aligned_cols=227 Identities=16% Similarity=0.247 Sum_probs=198.8
Q ss_pred hhhHHHHHHHHHHHHhhc----CCcchhHhHHHHHHHhCCCccchHHHHHHHHHHHHHHHHhhcCcccCCCCCCcHHHHH
Q 002148 697 GITIGAILEEIQGLYQQH----QQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCF 772 (959)
Q Consensus 697 ~~~l~~l~~~l~~~~~~~----~~~~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pDl~~~~f 772 (959)
..++|++++.++.+|+++ +.|..|.+.+.++.++|+. +.+.+..+++.++.+|+.|+. .++.++||.+.+||
T Consensus 68 ~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~--i~~~vp~Il~~VFe~TL~MI~--~df~eyPehR~~Ff 143 (321)
T 1w9c_A 68 ENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGH--ITAEIPQIFDAVFECTLNMIN--KDFEEYPEHRTNFF 143 (321)
T ss_dssp HHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGG--GGGGHHHHHHHHHHHHHHHHS--STTTCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHh--cccccChHHHHHHH
Confidence 467899999999999963 4588999999999999976 778999999999999999998 68999999999999
Q ss_pred HHHHHHHhhCCCccc--CcCChHHHHHHHHHhccCCCchhHHHHHHHHHHhhcCcCCCCchhhHHHHHHHHhhccHHHHH
Q 002148 773 LLASRCIRYCPQLFI--PSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPRGASITR 850 (959)
Q Consensus 773 ~l~~~~~~~~p~~~l--~s~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~g~~lv~ 850 (959)
.|+..+..+|+..++ +++.+..++++.+||+++.+++....+++.+..+++.... .+ +..+++...+...++.
T Consensus 144 ~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~--~~---~~~~~Fy~~fy~~il~ 218 (321)
T 1w9c_A 144 LLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQ--EE---AAAQSFYQTYFCDILQ 218 (321)
T ss_dssp HHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHH--CH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhc--Ch---HHHHHHHHHHHHHHHH
Confidence 999999999998876 4667999999999999999999999999999999976421 12 3467899999999999
Q ss_pred HHHHHcccCCCCCCcccHHHHHHHHHHHh-----------------hHHHHHHHHHHH-hhCCCCCCCHHHHHHHHHHHH
Q 002148 851 ILIASLTGALPSSRLETVTYALLALTRAY-----------------GVRSLEWAKESV-SLIPLTALAEVERSRFLQALS 912 (959)
Q Consensus 851 ~ll~~l~~~~~~~~~~~~a~il~~l~~~~-----------------~~~~~~wl~~~l-~~~p~~~~~~~~~~~f~~~l~ 912 (959)
.++..+.+..|.+.+...+.+|..+.... .....+|+.+.+ +.|| ++++++.+.|++.++
T Consensus 219 ~if~VlTDs~Hk~gF~~q~~iL~~lf~~ve~~~i~~pl~~~~~~~n~~~v~~~l~~lL~~~Fp--~l~~~qi~~fv~glf 296 (321)
T 1w9c_A 219 HIFSVVTDTSHTAGLTMHASILAYMFNLVEEGKISTSLNPGNPVNNQIFLQEYVANLLKSAFP--HLQDAQVKLFVTGLF 296 (321)
T ss_dssp HHHHHHHSSSCCTTHHHHHHHHHHHHHHHHTTCCCSCSCSSSCCCHHHHHHHHHHHHHHHHCT--TSCHHHHHHHHHHHH
T ss_pred HHHHHHhCchhhccHHHHHHHHHHHHHHHHcCccccccCCCCCcccHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHH
Confidence 99999999999999999999999997432 124667888777 5899 799999999999999
Q ss_pred HHhcCCCchhhhHHHHHHHHHHHh
Q 002148 913 EAASGVDVNAAMAPVEELSDVCRR 936 (959)
Q Consensus 913 ~~~~~~~~~~f~~~l~~F~~~~r~ 936 (959)
.. +++..+||..+|||....|.
T Consensus 297 ~~--~~d~~~Fk~~lrDFLIqiKE 318 (321)
T 1w9c_A 297 SL--NQDIPAFKEHLRDFLVQIKE 318 (321)
T ss_dssp HT--TTCHHHHHHHHHHHHHHHHT
T ss_pred Hc--cCCHHHHHHHHHHHHHHHHH
Confidence 74 46899999999999988775
No 16
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.52 E-value=7.3e-10 Score=138.19 Aligned_cols=345 Identities=14% Similarity=0.181 Sum_probs=228.2
Q ss_pred CCCcchhhHHHHHHHHhhcccCCccccchHHHhhhccC-C-CCcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHH
Q 002148 447 HNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPK-L-PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILT 524 (959)
Q Consensus 447 ~~~w~~~Ea~l~~l~~l~e~~~~~~~~~l~~l~~~l~~-l-p~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~ 524 (959)
+.+|..+.++..+++.+++.+.. ..++.+++.+.+ + ..++.+|.+++..+|.+++..... ....+++.+++.++
T Consensus 339 ~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~-~~~~~~~~~l~~l~ 414 (876)
T 1qgr_A 339 DDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPS-QLKPLVIQAMPTLI 414 (876)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHH-HHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHCcH---hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHH
Confidence 45799999999999999988762 456666665543 2 247999999999999998654310 00126778888888
Q ss_pred hccCCCH-HHHHHHHHHHHHHHHHhhhhh--hCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCC------
Q 002148 525 SGMSTSE-DTAAAAALAFRHICDDCRKKL--CGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELP------ 595 (959)
Q Consensus 525 ~~l~~~~-~v~~~A~~al~~lc~~c~~~L--~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p------ 595 (959)
..+.+++ .++..|+.++.++|+.+...+ .++++.++..+...+.. +...+.....+++.++...+
T Consensus 415 ~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~------~~~v~~~a~~al~~l~~~~~~~~~~~ 488 (876)
T 1qgr_A 415 ELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA------EPRVASNVCWAFSSLAEAAYEAADVA 488 (876)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS------CHHHHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHHHHHhhhccccc
Confidence 8887763 499999999999999988764 58999999888887742 25667888888888886532
Q ss_pred -------hHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHH
Q 002148 596 -------QVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIF 668 (959)
Q Consensus 596 -------~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il 668 (959)
.+...+++ .+++..+...+..... +....+ ...+++++.+++..+. ...+++..++|.+...+
T Consensus 489 ~~~~~~~~~~l~~~~----~~il~~L~~~l~~~~~--~~~~~r--~~~~~~l~~l~~~~~~--~~~~~~~~l~~~l~~~l 558 (876)
T 1qgr_A 489 DDQEEPATYCLSSSF----ELIVQKLLETTDRPDG--HQNNLR--SSAYESLMEIVKNSAK--DCYPAVQKTTLVIMERL 558 (876)
T ss_dssp TSCCCCCCCSSTTTH----HHHHHHHHHHTTSCSS--CSTTHH--HHHHHHHHHHHHTCCS--TTHHHHHHHHHHHHHHH
T ss_pred cccccccchhhhHhH----HHHHHHHHHHHhCcCc--chhhHH--HHHHHHHHHHHHHCch--hhHHHHHHHHHHHHHHH
Confidence 01122333 4444445555543321 000111 3457888888876653 35566777787776665
Q ss_pred Hhh--------c-cc----HHHHHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHHhhcC-----CcchhHhHHHHHHH
Q 002148 669 DIR--------A-WD----MRTMESLCRACKYAVRTSK-RFMGITIGAILEEIQGLYQQHQ-----QPCFLYLSSEVIKI 729 (959)
Q Consensus 669 ~~~--------~-~~----~~i~e~~~~~l~~~~~~~~-~~~~~~l~~l~~~l~~~~~~~~-----~~~~L~l~~~li~~ 729 (959)
... . .| +++.+.++.++..+++.+| ..+.|+++.++..+...+.... ....+.+++.++..
T Consensus 559 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~ 638 (876)
T 1qgr_A 559 QQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEV 638 (876)
T ss_dssp HHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHH
Confidence 542 1 22 3466778899999888888 8888999998888877666532 12457778888887
Q ss_pred hCCCccchHHHHHHHHHHHHHHHHhhcCcccCCCCCCcHHHHHHHHHHHHhhCCCcccCcCChHHHHHHHHHhccC--CC
Q 002148 730 FGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITV--QH 807 (959)
Q Consensus 730 ~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pDl~~~~f~l~~~~~~~~p~~~l~s~~l~~~~~~~~~~l~~--~~ 807 (959)
.|.. +.+.+..++. .....+.. .++++++...+..++.+++.....+. +.++.++...+..+.. .+
T Consensus 639 ~~~~--~~~~~~~~~~----~l~~~l~~----~~~~~vr~~a~~~l~~l~~~~~~~~~--~~~~~i~~~l~~~l~~~~~~ 706 (876)
T 1qgr_A 639 LGGE--FLKYMEAFKP----FLGIGLKN----YAEYQVCLAAVGLVGDLCRALQSNII--PFCDEVMQLLLENLGNENVH 706 (876)
T ss_dssp HGGG--GGGGHHHHHH----HHHHHHHH----CTTHHHHHHHHHHHHHHHHHHGGGGH--HHHHHHHHHHHHHHTCTTSC
T ss_pred HHhh--HHHHHHHHHH----HHHHHHcC----cchHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHhCCcccc
Confidence 7754 4444444332 22233331 14678999999999999986554332 2456777776666665 34
Q ss_pred chhHHHHHHHHHHhhc
Q 002148 808 REASNSILTFLSDIFD 823 (959)
Q Consensus 808 ~~~~~~~~~fl~~li~ 823 (959)
.+....++..+..++.
T Consensus 707 ~~~~~~~~~~l~~i~~ 722 (876)
T 1qgr_A 707 RSVKPQILSVFGDIAL 722 (876)
T ss_dssp GGGHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHH
Confidence 5566677777777765
No 17
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.52 E-value=2.9e-09 Score=132.46 Aligned_cols=402 Identities=8% Similarity=-0.011 Sum_probs=250.6
Q ss_pred HHHHHHHHHhhccCCCcchhhhhHHhHHHhHHHHhhcccccccCcccchHHHHHHHHhhhHHHHHHHHHHHHhhccCCCC
Q 002148 314 SMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQD 393 (959)
Q Consensus 314 ~~~~l~~ll~~~~~~~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~d 393 (959)
+..+++.+......++..+...++..+..+.+.. ....+.+++.++++.++..+.-|
T Consensus 367 ~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~---------------------~~~~~~~~l~~il~~l~~~l~d~-- 423 (861)
T 2bpt_A 367 LEPVLEFVEQNITADNWRNREAAVMAFGSIMDGP---------------------DKVQRTYYVHQALPSILNLMNDQ-- 423 (861)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSS---------------------CHHHHHHHHHHHHHHHHHGGGCS--
T ss_pred HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCC---------------------CHHHHHHHHHHHHHHHHHHcCCC--
Confidence 4456777777766777666666665544332110 01234667777888777655322
Q ss_pred CCCCChhhhHHHHHHHHHhhHHHHHhhhccCh----HHHHHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHhhcccCC
Q 002148 394 YQDLSLEDLKEFKHTRYAVADVLIDAASVLGG----DATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSV 469 (959)
Q Consensus 394 ~~~~~~d~~~~f~~~R~~~~d~l~~~~~il~~----~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~l~e~~~~ 469 (959)
+ ...|.....++..++..+++ ..++..+.+.+.+.+. +. ++-..+++++++.+++.+.+
T Consensus 424 ----~-------~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~-----~~-~~v~~~a~~al~~l~~~~~~ 486 (861)
T 2bpt_A 424 ----S-------LQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQ-----DH-PKVATNCSWTIINLVEQLAE 486 (861)
T ss_dssp ----C-------HHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHT-----SC-HHHHHHHHHHHHHHHHHHSS
T ss_pred ----c-------HHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhc-----cC-hHHHHHHHHHHHHHHHhccc
Confidence 1 12344444444444443332 2355556666655541 22 77788999999999888752
Q ss_pred ----ccccchHHHhhhccC----CCCcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccCC------------
Q 002148 470 ----VEAEVMPQVMALLPK----LPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMST------------ 529 (959)
Q Consensus 470 ----~~~~~l~~l~~~l~~----lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~------------ 529 (959)
.-.++++.++..+.. ...++.+|..++.++|......... ...++..+++.++..+..
T Consensus 487 ~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~--~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~ 564 (861)
T 2bpt_A 487 ATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT--VAETSASISTFVMDKLGQTMSVDENQLTLE 564 (861)
T ss_dssp SSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGG--GHHHHHHHHHHHHHHHHHHTTSCGGGCCHH
T ss_pred ccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchh--hHHHHHHHHHHHHHHHHHHHhhhcccCChh
Confidence 223566666665432 2235789999999999887654432 112344444444333221
Q ss_pred ----CHHHHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHhhccCCCCCCH-hhHHHHHHHHHHHHhcCChHHHHHHHH
Q 002148 530 ----SEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSA-EDSLHLVEALSMVITELPQVDAKKALE 604 (959)
Q Consensus 530 ----~~~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~~~~~~~~~l~~-~~~~~l~eai~~vi~~~p~~~~~~~l~ 604 (959)
...++..+..++..+++.++..+.|+++.++..+.+.++.. .. ..+...+.+++.++...+. +..+++.
T Consensus 565 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~-----~~~~v~~~~~~~l~~l~~~~~~-~~~~~l~ 638 (861)
T 2bpt_A 565 DAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKK-----DSAFIEDDVFYAISALAASLGK-GFEKYLE 638 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHST-----TGGGTHHHHHHHHHHHHHHHGG-GGHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccC-----CCCcHHHHHHHHHHHHHHHHhh-hHHHHHH
Confidence 11377889999999999999999999999999998888652 23 5678888899988877553 3456666
Q ss_pred HhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcccHHHHHHHHHH
Q 002148 605 MLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRA 684 (959)
Q Consensus 605 ~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~ 684 (959)
.++..++..+ +... .......++.++.+.+.++ ..+.++...++|.+...+..-..+.++++.+..+
T Consensus 639 ~i~~~l~~~l----~~~~-------~~vr~~a~~~l~~l~~~~~--~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~ 705 (861)
T 2bpt_A 639 TFSPYLLKAL----NQVD-------SPVSITAVGFIADISNSLE--EDFRRYSDAMMNVLAQMISNPNARRELKPAVLSV 705 (861)
T ss_dssp HHHHHHHHHH----HCTT-------SHHHHHHHHHHHHHHHHTG--GGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHH
T ss_pred HHHHHHHHHh----cccc-------HHHHHHHHHHHHHHHHHhc--hhccchHHHHHHHHHHHhCCccccHhhhHHHHHH
Confidence 6666665554 2211 1112235667777777664 3456677788887777665432346899999999
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHhhcC--------------CcchhHhHHHHHHHhCCCccchHHHHHHHHHHHHH
Q 002148 685 CKYAVRTSKRFMGITIGAILEEIQGLYQQHQ--------------QPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKR 750 (959)
Q Consensus 685 l~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~--------------~~~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~ 750 (959)
++.+....|..+.|+++.++..+........ ...++..++.++...|.. .+.+...+..++..
T Consensus 706 l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~---~~~~~~~~~~i~~~ 782 (861)
T 2bpt_A 706 FGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDK---PEALFPYVGTIFQF 782 (861)
T ss_dssp HHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTC---HHHHGGGHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccC---HHHHHHHHHHHHHH
Confidence 9999999999999999999988877665321 135677788888777753 11222222222222
Q ss_pred HHHhhcCcccCC-C-CCCcHHHHHHHHHHHHhhC
Q 002148 751 TTCLLTSIEEFT-S-RPDVADDCFLLASRCIRYC 782 (959)
Q Consensus 751 ~~~~l~~~~~~~-~-~pDl~~~~f~l~~~~~~~~ 782 (959)
....+. +.+ . +.+++...+..+..+.+..
T Consensus 783 l~~~~~---d~~~~~~~~vr~~a~~~l~~l~~~~ 813 (861)
T 2bpt_A 783 IAQVAE---DPQLYSEDATSRAAVGLIGDIAAMF 813 (861)
T ss_dssp HHHHHH---CHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHc---CcccCCcHHHHHHHHHHHHHHHHHc
Confidence 222222 100 1 5679999999999999977
No 18
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.25 E-value=3.8e-08 Score=127.03 Aligned_cols=605 Identities=11% Similarity=0.066 Sum_probs=336.6
Q ss_pred HHHHHHHhhhh-hHhHHHHHHHHHHHHhccCCCCCcccccchhHHHHHhcCCCC--chHHHHHHHHHHHHhhhccCCCCC
Q 002148 181 ALSTLTACLHI-NELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSE--ILSEASVNVISELIHYSAAGSSGG 257 (959)
Q Consensus 181 vl~~l~~~l~~-~~~~~~~l~~~~sWi~~~~~~~~~~~~~~~ll~~~~~~L~~~--~~~~~a~~~l~~ii~~~~~~~~~~ 257 (959)
+-+++....+. ++++..+.+-+...+... ....+.-....+++.+++.|.++ +.+.+|+.++..+.....
T Consensus 8 l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~-~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~------ 80 (1230)
T 1u6g_C 8 ISNLLEKMTSSDKDFRFMATNDLMTELQKD-SIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVK------ 80 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTSSS-CCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSC------
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHccc-ccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCC------
Confidence 33455553332 367777777776654431 11111112335777788888654 578999999998886432
Q ss_pred CCCchhHHHHHHHHHHhhHHHhhhcCCCHHHHHHHHHHHHHhhhHHHHHHhcC---CchHHHHHHHHHhhcc-CCCcchh
Q 002148 258 ATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATG---SDESMLIVHALLEVAS-HPEYDIA 333 (959)
Q Consensus 258 ~~~~~~~~~~l~~~v~~l~~~l~~~~~d~e~~~~l~~l~~~~~~~~~~~l~~~---~~~~~~~l~~ll~~~~-~~~~~v~ 333 (959)
.+.+..+++.++ ..+ .+.++......+..+..++......-... ......+++.++.... .++..+.
T Consensus 81 ----~~~~~~i~~~Ll---~~l--~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~ 151 (1230)
T 1u6g_C 81 ----EYQVETIVDTLC---TNM--LSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQ 151 (1230)
T ss_dssp ----HHHHHHHHHHHH---HHT--TCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHH
T ss_pred ----HHHHHHHHHHHH---HHh--cCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHH
Confidence 123333333322 222 13333333344444444433221100000 0135578888888777 5777888
Q ss_pred hhhHHhHHHhHHHHhhcccccccCcccchHHHHHHHHhhhHHHHHHHHHHHHhhccCCCCCCCCChhhhHHHHHHHHHhh
Q 002148 334 SMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYAVA 413 (959)
Q Consensus 334 ~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~ 413 (959)
..++..|..+.+...+ .+.|++.+++..++..+.-|+ ...|....
T Consensus 152 ~~al~~l~~~~~~~~~----------------------~l~~~~~~ll~~l~~~L~~~~-------------~~vR~~a~ 196 (1230)
T 1u6g_C 152 LEALDIMADMLSRQGG----------------------LLVNFHPSILTCLLPQLTSPR-------------LAVRKRTI 196 (1230)
T ss_dssp HHHHHHHHHHHHHTCS----------------------SCTTTHHHHHHHHGGGGGCSS-------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHhHh----------------------HHHHHHHHHHHHHHHHHcCCc-------------HHHHHHHH
Confidence 8999998887754311 122445566666666553221 14677777
Q ss_pred HHHHHhhhccChHHHHHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHhhcccCCccccchHHHhhhccC-C-CCcHHH
Q 002148 414 DVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPK-L-PQQPQL 491 (959)
Q Consensus 414 d~l~~~~~il~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~l~e~~~~~~~~~l~~l~~~l~~-l-p~~~~v 491 (959)
..+..++...+. .++..+.+.+.+.+.. ..++..+..++-+++.+++.++..-.++++.+++.+.+ + ..++.+
T Consensus 197 ~al~~l~~~~~~-~~~~~~l~~l~~~L~~----~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~v 271 (1230)
T 1u6g_C 197 IALGHLVMSCGN-IVFVDLIEHLLSELSK----NDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDEL 271 (1230)
T ss_dssp HHHHHHTTTC-----CTTHHHHHHHHHHH----TCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTT
T ss_pred HHHHHHHHhcCH-HHHHHHHHHHHHHhcc----CCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 777777766653 3333334444443322 12245566788888888887754333445555554432 1 236779
Q ss_pred HHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccCC-C-------------------------------------HHH
Q 002148 492 LQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMST-S-------------------------------------EDT 533 (959)
Q Consensus 492 ~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~-~-------------------------------------~~v 533 (959)
|.+++..++.+.+..... ...+++.+++.++..+.. + .++
T Consensus 272 R~~a~~~l~~l~~~~~~~--~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~v 349 (1230)
T 1u6g_C 272 REYCIQAFESFVRRCPKE--VYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKV 349 (1230)
T ss_dssp HHHHHHHHHHHHHCTTCC--CHHHHHHHHHHHTTCCCCC------------------------------------CTTHH
T ss_pred HHHHHHHHHHHHHHChHH--HHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHH
Confidence 999999998877654322 224788888888776631 0 026
Q ss_pred HHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCChH--------------HH
Q 002148 534 AAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQV--------------DA 599 (959)
Q Consensus 534 ~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~--------------~~ 599 (959)
+..|+.++..++......+.++++.++..+...+.. -..+.|..++++++.++...... ..
T Consensus 350 R~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d-----~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 424 (1230)
T 1u6g_C 350 RRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKE-----REENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETP 424 (1230)
T ss_dssp HHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSC-----SSSHHHHHHHHHHHHHHHHHCCC------------CCCH
T ss_pred HHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCC-----CchHHHHHHHHHHHHHHHHhccccccccCccccccccch
Confidence 778888999888744434555555555554333321 23567888899988888754310 12
Q ss_pred HHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcccHHHHH
Q 002148 600 KKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTME 679 (959)
Q Consensus 600 ~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~i~e 679 (959)
...+..++..++..+.+.+..... ..+ ...+..++.+..... ..+.+++.+++|.+...+........+.+
T Consensus 425 ~~~~~~~l~~ll~~l~~~l~~~~~-----~vr--~~~~~~L~~l~~~~~--~~l~~~l~~ll~~l~~~L~d~~~~~~v~~ 495 (1230)
T 1u6g_C 425 LTMLQSQVPNIVKALHKQMKEKSV-----KTR--QCCFNMLTELVNVLP--GALTQHIPVLVPGIIFSLNDKSSSSNLKI 495 (1230)
T ss_dssp HHHHHHHTTHHHHHHHHHTTCSCH-----HHH--HHHHHHHHHHHHHST--TTTGGGHHHHHHHHHHHTTCSSSCHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHhccCCH-----HHH--HHHHHHHHHHHHHch--hhhHHHHHHHHHHHHHHHcCCCCcchHHH
Confidence 245566677777666666553211 112 234566666666543 22334567788877777654333347888
Q ss_pred HHHHHHHHHHHHhhhh-hhhhHHHHHHHHHHHHhhcCC---cchhHhHHHHHHHhCC-----CccchHHHHHHHHHHHHH
Q 002148 680 SLCRACKYAVRTSKRF-MGITIGAILEEIQGLYQQHQQ---PCFLYLSSEVIKIFGS-----DPSCASYLHNLIEALFKR 750 (959)
Q Consensus 680 ~~~~~l~~~~~~~~~~-~~~~l~~l~~~l~~~~~~~~~---~~~L~l~~~li~~~~~-----~~~~~~~l~~~~~~l~~~ 750 (959)
.++..+...+...|+. +.|+++.++..+...+..... ...+..++.++..+|. .....+.+..++..
T Consensus 496 ~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~---- 571 (1230)
T 1u6g_C 496 DALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTC---- 571 (1230)
T ss_dssp HHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHH----
T ss_pred HHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHH----
Confidence 8888888877765554 556666666666665544221 2357788888888886 11244444444433
Q ss_pred HHHhhcCcccCCCCCCcHHHHHHHHHHHHhhCCCcccCcCChHHHHHHHHHhccCCCchhHHHHHHHHHHhhcCcCCCCc
Q 002148 751 TTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKG 830 (959)
Q Consensus 751 ~~~~l~~~~~~~~~pDl~~~~f~l~~~~~~~~p~~~l~s~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~li~~~~~~~~ 830 (959)
.+..+. ..+.+++++......++.++.+....+. +.+..+++.....+.. ..+-..++..+..+.......+.
T Consensus 572 ll~~l~---~~d~~~~vr~~a~~~lg~L~~~~g~~~~--~~~~~~l~~L~~~l~~--e~~r~~~~~al~~i~~~~~~~~~ 644 (1230)
T 1u6g_C 572 TIKRLK---AADIDQEVKERAISCMGQIICNLGDNLG--SDLPNTLQIFLERLKN--EITRLTTVKALTLIAGSPLKIDL 644 (1230)
T ss_dssp HHHHHS---CSSSCHHHHHHHHHHHHHHHHHTGGGCC--THHHHHHHHHHHHTTS--SSHHHHHHHHHHHHTTCSSCCCC
T ss_pred HHHHHh---ccCCCHHHHHHHHHHHHHHHHHhCchhh--hhHHHHHHHHHHHhcc--chhHHHHHHHHHHHHhCccccch
Confidence 333343 1356678899989999999988766543 3566777766555542 23444566666666643211111
Q ss_pred hhhHHHHHHHHhhccHHHHHHHHHHcccCCCCCCcccHHHHHHHHHHHhh
Q 002148 831 EEFLSVRDSVIIPRGASITRILIASLTGALPSSRLETVTYALLALTRAYG 880 (959)
Q Consensus 831 ~~~~~~~~~~~~~~g~~lv~~ll~~l~~~~~~~~~~~~a~il~~l~~~~~ 880 (959)
.++ +. .++..+...+. .-.+.........+..+...++
T Consensus 645 ~~~---~~--------~i~~~L~~~l~-~~~~~~r~~a~~al~~l~~~~~ 682 (1230)
T 1u6g_C 645 RPV---LG--------EGVPILASFLR-KNQRALKLGTLSALDILIKNYS 682 (1230)
T ss_dssp HHH---HH--------HHHHHHHHHTT-SCCHHHHHHHHHHHHHHHHHCC
T ss_pred HHH---HH--------HHHHHHHHHHH-hCCHHHHHHHHHHHHHHHhccc
Confidence 122 22 22222333322 2233344556677777777665
No 19
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.17 E-value=1.8e-07 Score=110.60 Aligned_cols=562 Identities=10% Similarity=0.066 Sum_probs=323.1
Q ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHhc---ChhhHHHHHHHhcc-CCCChhHHHHHHHHHHhhhhcCCCCCChhh
Q 002148 4 QNTVKEALNALYHHPDDAVRMQADRWLQDFQH---TIDAWQVADNLLHD-ATSNLETLIFCSQTLRSKVQRDVEELPSEA 79 (959)
Q Consensus 4 ~~~v~~av~~l~~~~d~~~r~~A~~~L~~~q~---s~~aw~~~~~lL~~-~~~~~~~~~faa~~L~~ki~~~w~~l~~~~ 79 (959)
...+...+..+ .++|+..|..|-+-|..+-. ....|.-....|.. -+.+.++|..++..|...... +...+
T Consensus 9 ~~~i~~l~~~l-~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~d~~~~vr~~~~~~L~~~~~~----~~~~~ 83 (588)
T 1b3u_A 9 LYPIAVLIDEL-RNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTL----VGGPE 83 (588)
T ss_dssp SHHHHHHHHHT-TCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGG----GTSGG
T ss_pred cCcHHHHHHHh-hcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhc----cCcHH
Confidence 34567777776 47799999999888876532 23456544444432 134568999999888743321 11111
Q ss_pred HHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHhhcccc-ccCCccchHHHHHhcCCCC-CchhhHHHHhcccccccc
Q 002148 80 VRGLQDSLNTLLKKFH-KGPPKVRTQISIAVAALAVHISAE-DWGGGGIVNWLRDEMNSHP-EFVPGFLELLTVLPEEVF 156 (959)
Q Consensus 80 ~~~lr~~Ll~~l~~~~-~~~~~v~~kL~~~la~l~~~~~~~-~Wp~~~~~~~l~~~l~~~~-~~~~~~L~~L~~l~EE~~ 156 (959)
....++..+.... .....||.+.+.+|..++...+++ .|+. +++.+.....+.. ........++..+.+...
T Consensus 84 ---~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~--l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~ 158 (588)
T 1b3u_A 84 ---YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAH--FVPLVKRLAGGDWFTSRTSACGLFSVCYPRVS 158 (588)
T ss_dssp ---GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHT--HHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSC
T ss_pred ---HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHH--HHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcC
Confidence 1123344444332 346789999999999988765431 2433 4444444433321 122344455555443321
Q ss_pred cccccCChhHHHHHHHHHHHhHHHHHHHHHHhhhh--hHhHHHHHHHHHHHHhccCCCCCcccccchhHHHHHhcCCCC-
Q 002148 157 NYKIAARPERRRQFEKELTSQMEVALSTLTACLHI--NELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSE- 233 (959)
Q Consensus 157 ~~~~~l~~~~r~~l~~~l~~~~~~vl~~l~~~l~~--~~~~~~~l~~~~sWi~~~~~~~~~~~~~~~ll~~~~~~L~~~- 233 (959)
. ...+.++.++...+.+ +.++..+++++..+... .+.+ .....+++.+...++++
T Consensus 159 -------~-----------~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~---~~~~-~~~~~l~~~l~~~~~d~~ 216 (588)
T 1b3u_A 159 -------S-----------AVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKV---LELD-NVKSEIIPMFSNLASDEQ 216 (588)
T ss_dssp -------H-----------HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHT---SCHH-HHHHTHHHHHHHHHTCSC
T ss_pred -------H-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH---hcHH-hHHHHHHHHHHHHhcCCc
Confidence 1 1123455555555554 36889999999988874 2221 12345777777777765
Q ss_pred -chHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhhhcCCCHHHHHHHHHHHHHhhhHHHHHHhcCCc
Q 002148 234 -ILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSD 312 (959)
Q Consensus 234 -~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~l~~~~~d~e~~~~l~~l~~~~~~~~~~~l~~~~~ 312 (959)
..+..|++++..+...... ......++|.+.. +. .+.+.......++.+..++.....-.
T Consensus 217 ~~vr~~a~~~l~~l~~~~~~---------~~~~~~~~~~l~~----~~-~d~~~~vR~~a~~~l~~l~~~~~~~~----- 277 (588)
T 1b3u_A 217 DSVRLLAVEACVNIAQLLPQ---------EDLEALVMPTLRQ----AA-EDKSWRVRYMVADKFTELQKAVGPEI----- 277 (588)
T ss_dssp HHHHTTHHHHHHHHHHHSCH---------HHHHHHTHHHHHH----HH-TCSSHHHHHHHHHTHHHHHHHHCHHH-----
T ss_pred HHHHHHHHHHHHHHHHhCCH---------HHHHHHHHHHHHH----Hc-cCCCHHHHHHHHHHHHHHHHHhCccc-----
Confidence 4678899999888764321 1122223332221 11 23444455556666666554331100
Q ss_pred hHHHHHHHHHhhccCCCcchhhhhHHhHHHhHHHHhhcccccccCcccchHHHHHHHHhhhHHHHHHHHHHHHhhccCCC
Q 002148 313 ESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQ 392 (959)
Q Consensus 313 ~~~~~l~~ll~~~~~~~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~ 392 (959)
....+++.++.+...++.++...+...+..+.+.+.. +. . ..+++..+++.+...+ .
T Consensus 278 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---------~~--------~---~~~~~~~l~p~l~~~l---~ 334 (588)
T 1b3u_A 278 TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSA---------DC--------R---ENVIMSQILPCIKELV---S 334 (588)
T ss_dssp HHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCT---------TT--------H---HHHHHHTHHHHHHHHH---T
T ss_pred chhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCh---------hh--------h---hhHHHHHHHHHHHHHh---c
Confidence 1234677777777788888888888877766654311 00 0 0012222233222211 1
Q ss_pred CCCCCChhhhHHHHHHHHHhhHHHHHhhhccChHHHHHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHhhcccCCcc-
Q 002148 393 DYQDLSLEDLKEFKHTRYAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVE- 471 (959)
Q Consensus 393 d~~~~~~d~~~~f~~~R~~~~d~l~~~~~il~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~l~e~~~~~~- 471 (959)
| .+ ...|..+...+..++..+|.+.....+.+.+...+. +.++.-+++++.+++.+.+.+..+.
T Consensus 335 d-~~---------~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~-----d~~~~Vr~~a~~~l~~l~~~~~~~~~ 399 (588)
T 1b3u_A 335 D-AN---------QHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLK-----DECPEVRLNIISNLDCVNEVIGIRQL 399 (588)
T ss_dssp C-SC---------HHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHT-----CSCHHHHHHHHTTCHHHHHHSCHHHH
T ss_pred C-CC---------HHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC-----CCchHHHHHHHHHHHHHHHhcCHHHH
Confidence 1 01 145777777777777777765555666666666542 4557777888888888887665331
Q ss_pred -ccchHHHhhhccCCCCcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhh
Q 002148 472 -AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCR 549 (959)
Q Consensus 472 -~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~lc~~c~ 549 (959)
...+|.+...+.. .+.++|.+++..++.++..+.... +.+.+++.+...+.++. .|+..|+.++..+++..+
T Consensus 400 ~~~~lp~l~~~~~d--~~~~vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~ 473 (588)
T 1b3u_A 400 SQSLLPAIVELAED--AKWRVRLAIIEYMPLLAGQLGVEF----FDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFG 473 (588)
T ss_dssp HHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHHCGGG----CCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHcCHHH----HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC
Confidence 2344444443322 378899999999999988776532 34567777777787763 499999999999998876
Q ss_pred hhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccC
Q 002148 550 KKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKH 629 (959)
Q Consensus 550 ~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~ 629 (959)
... +.+.++..+...... -+...|...+++++.+...++.+. +...++..+ .+.+..... .
T Consensus 474 ~~~--~~~~llp~l~~~~~~-----~~~~~R~~a~~~l~~l~~~~~~~~---~~~~~~~~l----~~~l~d~~~-----~ 534 (588)
T 1b3u_A 474 KEW--AHATIIPKVLAMSGD-----PNYLHRMTTLFCINVLSEVCGQDI---TTKHMLPTV----LRMAGDPVA-----N 534 (588)
T ss_dssp HHH--HHHHTHHHHHHTTTC-----SCHHHHHHHHHHHHHHHHHHHHHH---HHHHTHHHH----HHGGGCSCH-----H
T ss_pred chh--HHHHHHHHHHHHhhC-----CCHHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHH----HhhCCCCCc-----h
Confidence 542 234555555444432 246778889999998887654322 333333333 333332210 1
Q ss_pred chhhhHHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcccHHHHHHHHHHHHH
Q 002148 630 PRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKY 687 (959)
Q Consensus 630 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~ 687 (959)
.+ ...+.+++.+++.++. +. .-..+.|.+..+. -..|.++++.++.++..
T Consensus 535 Vr--~~a~~~l~~l~~~~~~-~~---~~~~~~p~l~~l~--~d~d~~vr~~a~~al~~ 584 (588)
T 1b3u_A 535 VR--FNVAKSLQKIGPILDN-ST---LQSEVKPILEKLT--QDQDVDVKYFAQEALTV 584 (588)
T ss_dssp HH--HHHHHHHHHHGGGSCH-HH---HHHHHHHHHHHHT--TCSSHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHHHHhch-hh---hHHHHHHHHHHHc--CCCchhHHHHHHHHHHH
Confidence 11 2356777777765542 11 1246777777743 24577888888888764
No 20
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.97 E-value=2.9e-07 Score=108.86 Aligned_cols=481 Identities=12% Similarity=0.083 Sum_probs=279.9
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHhcC---hhhHH----HHHHHhccCCCChhHHHHHHHHHHhhhhcCCCCCChhh
Q 002148 7 VKEALNALYHHPDDAVRMQADRWLQDFQHT---IDAWQ----VADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEA 79 (959)
Q Consensus 7 v~~av~~l~~~~d~~~r~~A~~~L~~~q~s---~~aw~----~~~~lL~~~~~~~~~~~faa~~L~~ki~~~w~~l~~~~ 79 (959)
+..++..+...+++..|+.|-+.|.++-.. ...|. +...+.. +.+..+|..|+.++..-.. .+++..
T Consensus 88 ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~--~~~~~~R~~a~~~l~~~~~----~~~~~~ 161 (588)
T 1b3u_A 88 LLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAG--GDWFTSRTSACGLFSVCYP----RVSSAV 161 (588)
T ss_dssp GHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHT--CSSHHHHHHHGGGHHHHTT----TSCHHH
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHH----hcCHHH
Confidence 344445555567888999999888887643 12233 3333333 3466788888887776543 234433
Q ss_pred HHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHhhcccccc-CCccchHHHHHhcCCCC-CchhhHHHHhcccccccc
Q 002148 80 VRGLQDSLNTLLKKFH-KGPPKVRTQISIAVAALAVHISAEDW-GGGGIVNWLRDEMNSHP-EFVPGFLELLTVLPEEVF 156 (959)
Q Consensus 80 ~~~lr~~Ll~~l~~~~-~~~~~v~~kL~~~la~l~~~~~~~~W-p~~~~~~~l~~~l~~~~-~~~~~~L~~L~~l~EE~~ 156 (959)
++.++..+.... .....||...+.+++.++...+.+.| +. +++.+...++... ......+..|..+.+...
T Consensus 162 ----~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~--l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~ 235 (588)
T 1b3u_A 162 ----KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSE--IIPMFSNLASDEQDSVRLLAVEACVNIAQLLP 235 (588)
T ss_dssp ----HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHT--HHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSC
T ss_pred ----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHH--HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCC
Confidence 444445444432 35678999999999998876553333 44 6666666665432 223445555555544332
Q ss_pred cccccCChhHHHHHHHHHHHhHHHHHHHHHHhhhhh--HhHHHHHHHHHHHHhccCCCCCcccccchhHHHHHhcCCCC-
Q 002148 157 NYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN--ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSE- 233 (959)
Q Consensus 157 ~~~~~l~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~--~~~~~~l~~~~sWi~~~~~~~~~~~~~~~ll~~~~~~L~~~- 233 (959)
. + ...+.++.++...+.++ .++..+.+++....... +.+ .....+++.+...+.++
T Consensus 236 ~-------~----------~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~---~~~-~~~~~l~~~l~~~l~d~~ 294 (588)
T 1b3u_A 236 Q-------E----------DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAV---GPE-ITKTDLVPAFQNLMKDCE 294 (588)
T ss_dssp H-------H----------HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHH---CHH-HHHHTHHHHHHHHHTCSS
T ss_pred H-------H----------HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHh---Ccc-cchhHHHHHHHHHhCCCc
Confidence 1 0 12234555555555543 57888888888776531 111 11235677777777765
Q ss_pred -chHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhhhcCCCHHHHHHHHHHHHHhhhHHHHHHhcCCc
Q 002148 234 -ILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSD 312 (959)
Q Consensus 234 -~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~l~~~~~d~e~~~~l~~l~~~~~~~~~~~l~~~~~ 312 (959)
+++..|+.++..+....+.. .........++|.+..+ + .+.+....+..+..+..++.....-.
T Consensus 295 ~~vr~~a~~~l~~~~~~~~~~-----~~~~~~~~~l~p~l~~~---l--~d~~~~vR~~a~~~l~~l~~~~~~~~----- 359 (588)
T 1b3u_A 295 AEVRAAASHKVKEFCENLSAD-----CRENVIMSQILPCIKEL---V--SDANQHVKSALASVIMGLSPILGKDN----- 359 (588)
T ss_dssp HHHHHHHHHHHHHHHHTSCTT-----THHHHHHHTHHHHHHHH---H--TCSCHHHHHHHHTTGGGGHHHHCHHH-----
T ss_pred HHHHHHHHHHHHHHHHHhChh-----hhhhHHHHHHHHHHHHH---h--cCCCHHHHHHHHHHHHHHHHHhhHhH-----
Confidence 57888999998888654310 00012233344433221 1 23444444555555555443321110
Q ss_pred hHHHHHHHHHhhccCCCcchhhhhHHhHHHhHHHHhhcccccccCcccchHHHHHHHHhhhHHHHHHHHHHHHhhccCCC
Q 002148 313 ESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQ 392 (959)
Q Consensus 313 ~~~~~l~~ll~~~~~~~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~ 392 (959)
....+++.++.+...++++|...++..+..+.+.... ....+ .+++.+..-+ .
T Consensus 360 ~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~-----------------~~~~~-------~~lp~l~~~~---~ 412 (588)
T 1b3u_A 360 TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI-----------------RQLSQ-------SLLPAIVELA---E 412 (588)
T ss_dssp HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH-----------------HHHHH-------HHHHHHHHHH---T
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH-----------------HHHHH-------HHHHHHHHHh---c
Confidence 1234566677777777788888888877666543310 00111 2222222211 1
Q ss_pred CCCCCChhhhHHHHHHHHHhhHHHHHhhhccChHHHHHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHhhcccCCccc
Q 002148 393 DYQDLSLEDLKEFKHTRYAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEA 472 (959)
Q Consensus 393 d~~~~~~d~~~~f~~~R~~~~d~l~~~~~il~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~l~e~~~~~~~ 472 (959)
| .+| ..|..+.+.+..++..+|++.+...+.+.+...+. +.+|.-+++++.+++.+++.+..+.
T Consensus 413 d-~~~---------~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-----d~~~~Vr~~a~~~l~~l~~~~~~~~- 476 (588)
T 1b3u_A 413 D-AKW---------RVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLV-----DHVYAIREAATSNLKKLVEKFGKEW- 476 (588)
T ss_dssp C-SSH---------HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGG-----CSSHHHHHHHHHHHHHHHHHHCHHH-
T ss_pred C-CCc---------hHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhc-----CCcHHHHHHHHHHHHHHHHHhCchh-
Confidence 1 111 35666777777777666754333445555555432 5678888999999999988775431
Q ss_pred cchHHHhhhccCC--CCcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhh
Q 002148 473 EVMPQVMALLPKL--PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCR 549 (959)
Q Consensus 473 ~~l~~l~~~l~~l--p~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~lc~~c~ 549 (959)
.++.++..+..+ ..+..+|.+++.++|.+++.+.... +++.+++.+.+.++++. .|+..++.++..+++..+
T Consensus 477 -~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~----~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~ 551 (588)
T 1b3u_A 477 -AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI----TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILD 551 (588)
T ss_dssp -HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHH----HHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSC
T ss_pred -HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHH----HHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhc
Confidence 233334333222 2368899999999999998876542 67788888888887753 499999999999997665
Q ss_pred hhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHH
Q 002148 550 KKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMV 590 (959)
Q Consensus 550 ~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~v 590 (959)
....+ +.++..+..+.+ .-+.+.|....++++.+
T Consensus 552 ~~~~~--~~~~p~l~~l~~-----d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 552 NSTLQ--SEVKPILEKLTQ-----DQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHH--HHHHHHHHHHTT-----CSSHHHHHHHHHHHHHT
T ss_pred hhhhH--HHHHHHHHHHcC-----CCchhHHHHHHHHHHHh
Confidence 44321 445555555443 23567888888887754
No 21
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.24 E-value=0.00031 Score=82.49 Aligned_cols=462 Identities=13% Similarity=0.101 Sum_probs=233.6
Q ss_pred HccCCCHHHHHHHHHHHHHHhc-ChhhHHHHHHHhcc--CCCChhHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHHHHH
Q 002148 14 LYHHPDDAVRMQADRWLQDFQH-TIDAWQVADNLLHD--ATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTL 90 (959)
Q Consensus 14 l~~~~d~~~r~~A~~~L~~~q~-s~~aw~~~~~lL~~--~~~~~~~~~faa~~L~~ki~~~w~~l~~~~~~~lr~~Ll~~ 90 (959)
+..++|...|+-+--++..+-+ .++.-.++..-+.+ .+.++.+|-.|..++-+.. .++-...+-..+...
T Consensus 57 l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~-------~~~~~~~l~~~l~~~ 129 (591)
T 2vgl_B 57 CMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR-------VDKITEYLCEPLRKC 129 (591)
T ss_dssp TTSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC-------SGGGHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHHH
Confidence 3445677777777777766554 45543333333321 1356667777766664321 333334444444333
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCC-CchhhHHHHhcccccccccc-cccCChhHHH
Q 002148 91 LKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHP-EFVPGFLELLTVLPEEVFNY-KIAARPERRR 168 (959)
Q Consensus 91 l~~~~~~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~l~~~~-~~~~~~L~~L~~l~EE~~~~-~~~l~~~~r~ 168 (959)
+. ..+.+||.+-+.++..++... |+.+++.++++.+.+.+.... ......+..|..+.++-.+. ...+.
T Consensus 130 L~---d~~~~VRk~A~~al~~i~~~~-p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~----- 200 (591)
T 2vgl_B 130 LK---DEDPYVRKTAAVCVAKLHDIN-AQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLN----- 200 (591)
T ss_dssp SS---CSCHHHHHHHHHHHHHHHHSS-CCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCH-----
T ss_pred cC---CCChHHHHHHHHHHHHHHhhC-hhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhcc-----
Confidence 32 357899999999999988744 456653236777777776432 23455666666666553221 11110
Q ss_pred HHHHHHHHhHHHHHHHHHHhhhhhHhHHHHHHHHHHHHhccCCCCCcccccchhHHHHHhcCCC--CchHHHHHHHHHHH
Q 002148 169 QFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHS--EILSEASVNVISEL 246 (959)
Q Consensus 169 ~l~~~l~~~~~~vl~~l~~~l~~~~~~~~~l~~~~sWi~~~~~~~~~~~~~~~ll~~~~~~L~~--~~~~~~a~~~l~~i 246 (959)
......++..+.. .++-.+..+++++..+. |.+.-....+++.+...+++ +.+...|+.++..+
T Consensus 201 ------~~~~~~Ll~~l~~--~~~~~q~~il~~l~~l~------~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l 266 (591)
T 2vgl_B 201 ------PQNINKLLTALNE--CTEWGQIFILDCLSNYN------PKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKF 266 (591)
T ss_dssp ------HHHHHHHHHHHHH--CCHHHHHHHHHHHHTSC------CCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHS
T ss_pred ------HHHHHHHHHcCCC--CCchHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 1112222222221 11224455566554322 11111124577777777764 45677777777666
Q ss_pred HhhhccCCCCCCCCchhHHHHHHHHHHh-hHHHhhhcCCCHHHHHHHHHHHHHhhhHHHHHHhcCCchHHHHHHHHHhhc
Q 002148 247 IHYSAAGSSGGATVNMPLIQVIVPQIMS-LKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVA 325 (959)
Q Consensus 247 i~~~~~~~~~~~~~~~~~~~~l~~~v~~-l~~~l~~~~~d~e~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~l~~ll~~~ 325 (959)
...... ..+.++.+...+.. +. .+. +.|.+......+.+..++..++..+ ...+..+ .+.
T Consensus 267 ~~~~~~--------~~~~~~~~~~~~~~~L~-~L~--~~d~~vr~~aL~~l~~i~~~~p~~~-------~~~~~~~-~~~ 327 (591)
T 2vgl_B 267 LELLPK--------DSDYYNMLLKKLAPPLV-TLL--SGEPEVQYVALRNINLIVQKRPEIL-------KQEIKVF-FVK 327 (591)
T ss_dssp CCSCCB--------TTBSHHHHHHHTHHHHH-HHT--TSCHHHHHHHHHHHHHHHHHCCSTT-------TTCTTTT-SCC
T ss_pred hhccCC--------CHHHHHHHHHHHHHHHH-HHh--cCCccHHHHHHHHHHHHHHhChHHH-------HHHHHhh-eec
Confidence 432100 01122222222211 11 222 2344433233344444443332221 1112211 233
Q ss_pred cCCCcchhhhhHHhHHHhHHHHhhcccccccCcccchHHHHHHHHhhhHHHHHHHHHHHHhhccCCCCCCCCChhhhHHH
Q 002148 326 SHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEF 405 (959)
Q Consensus 326 ~~~~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~d~~~~~~d~~~~f 405 (959)
.+++..|...+++.|+.+.+. . ....+ +..+...+ .+. |
T Consensus 328 ~~d~~~Ir~~al~~L~~l~~~-------------~-----------nv~~i----v~~L~~~l---~~~---d------- 366 (591)
T 2vgl_B 328 YNDPIYVKLEKLDIMIRLASQ-------------A-----------NIAQV----LAELKEYA---TEV---D------- 366 (591)
T ss_dssp TTSCHHHHHHHHHHHHHTCCS-------------S-----------THHHH----HHHHHHHT---TSS---C-------
T ss_pred cCChHHHHHHHHHHHHHHCCh-------------h-----------hHHHH----HHHHHHHH---hcC---C-------
Confidence 333466778888877654310 0 01122 22222222 110 1
Q ss_pred HHHHHHhhHHHHHhhhccCh--HHHHHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHhhcccCCccccchHHHhhhcc
Q 002148 406 KHTRYAVADVLIDAASVLGG--DATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLP 483 (959)
Q Consensus 406 ~~~R~~~~d~l~~~~~il~~--~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~l~e~~~~~~~~~l~~l~~~l~ 483 (959)
.+||+.+...+..++.-.++ +.++..+.+.+.. ..+|-..|+ +.+++.+....+......+..+.+.+.
T Consensus 367 ~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~--------~~~~v~~e~-i~~l~~ii~~~p~~~~~~v~~L~~~l~ 437 (591)
T 2vgl_B 367 VDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQT--------KVNYVVQEA-IVVIRDIFRKYPNKYESIIATLCENLD 437 (591)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT--------CCHHHHHHH-HHHHHHHHHHSCSSCCTTHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHcc--------cchHHHHHH-HHHHHHHHHHCcchHHHHHHHHHHHHH
Confidence 13677776667666654431 3455544444432 344555555 557777766655444456677766665
Q ss_pred CCCCcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHhhhhhhCCHHHHHHH
Q 002148 484 KLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMS-TSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNV 562 (959)
Q Consensus 484 ~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~-~~~~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~ 562 (959)
... +|.++.+++|++|+|++++.. .+.++..+...+. ++..++..+..|+.++...+.....+.+..+
T Consensus 438 ~~~-~~~~~~~~~wilGey~~~~~~-------~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~~~~i~~l--- 506 (591)
T 2vgl_B 438 SLD-EPDARAAMIWIVGEYAERIDN-------ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQELVQQV--- 506 (591)
T ss_dssp TCC-SHHHHHHHHHHHHTTCTTCTT-------HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTTHHHHHHH---
T ss_pred hcc-CHHHHHHHHHHHHcccccccC-------HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHH---
Confidence 443 688999999999999988754 2355566665543 3445899999999999875533221222222
Q ss_pred HHHHhhccCCCCCCHhhHHHHHHHHHH
Q 002148 563 YRTAVNGEGSLKVSAEDSLHLVEALSM 589 (959)
Q Consensus 563 ~~~~~~~~~~~~l~~~~~~~l~eai~~ 589 (959)
+...... ..+.+.|.+.++..+.
T Consensus 507 l~~~~~d----~~d~evrdRA~~y~~l 529 (591)
T 2vgl_B 507 LSLATQD----SDNPDLRDRGYIYWRL 529 (591)
T ss_dssp HHHHHTT----CCCHHHHHHHHHHHTT
T ss_pred HHHhhhc----CCChHHHHHHHHHHHH
Confidence 2222211 2356777777776653
No 22
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.12 E-value=0.0076 Score=75.35 Aligned_cols=297 Identities=9% Similarity=0.086 Sum_probs=162.0
Q ss_pred HHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhcc----CCCH-HHHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHH
Q 002148 491 LLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGM----STSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRT 565 (959)
Q Consensus 491 v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l----~~~~-~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~ 565 (959)
.|..+..++...+.-+.. ..++.+++++...+ ..++ ....+|..++..+++.|.....++++.+++.+..
T Consensus 423 ~r~~~~~~L~~~~~~~~~-----~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~ 497 (963)
T 2x19_B 423 YRVDISDTLMYVYEMLGA-----ELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPR 497 (963)
T ss_dssp HHHHHHHHHHHHHHHHTH-----HHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHccH-----HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHh
Confidence 356666666665544432 26667777766555 3322 3678899999999998877666777777764332
Q ss_pred HhhccCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhh
Q 002148 566 AVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFR 645 (959)
Q Consensus 566 ~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 645 (959)
+.. -....+...+..+|.....+... ..++.+++..+-+.+.. . ...... ...+..+.+
T Consensus 498 l~~------~~~~vr~~~~~~l~~~~~~l~~~------~~~l~~vl~~l~~~l~~--~----~V~~~A---~~al~~l~~ 556 (963)
T 2x19_B 498 ISI------SNVQLADTVMFTIGALSEWLADH------PVMINSVLPLVLHALGN--P----ELSVSS---VSTLKKICR 556 (963)
T ss_dssp SCC------CSHHHHHHHHHHHHHTHHHHHHC------HHHHTTTHHHHHHHTTC--G----GGHHHH---HHHHHHHHH
T ss_pred CCC------CcHHHHHHHHHHHHHHHHHHHhC------HHHHHHHHHHHHHHhCC--c----hHHHHH---HHHHHHHHH
Confidence 211 12335555666666554332211 13556666665555532 1 011122 233333333
Q ss_pred hcCCcccHHHHHHHHhHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHHhh---cC------
Q 002148 646 YVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSK-RFMGITIGAILEEIQGLYQQ---HQ------ 715 (959)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~~~~~~-~~~~~~l~~l~~~l~~~~~~---~~------ 715 (959)
... ..+.+++..+++.+..++.....+....+.+.+++..++...+ ....+++..+++.+...+.. .+
T Consensus 557 ~~~--~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~ 634 (963)
T 2x19_B 557 ECK--YDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNK 634 (963)
T ss_dssp HTG--GGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHH
T ss_pred HHH--HHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 322 2234455666666666665433345667777888887776554 55566666666655544432 11
Q ss_pred --CcchhHhHHHHHHHhCCCcc----------------chHHHHHHHHHHHHHHHHhhcCcccCCCCCCcHHHHHHHHHH
Q 002148 716 --QPCFLYLSSEVIKIFGSDPS----------------CASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASR 777 (959)
Q Consensus 716 --~~~~L~l~~~li~~~~~~~~----------------~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pDl~~~~f~l~~~ 777 (959)
....+.+++.++..++.... ....+...+..+......++.. ..+++++.+..+.++.+
T Consensus 635 ~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~v~e~~~~~l~~ 711 (963)
T 2x19_B 635 LAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSK---WLNDAQVVEAVCAIFEK 711 (963)
T ss_dssp HHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHh---ccCchHHHHHHHHHHHH
Confidence 11356778888888774211 1112333444444433344431 23567899999999999
Q ss_pred HHhhCCCcccCcCChHHHHHHHHHhccCCCchhHHHHHHHHHHhhc
Q 002148 778 CIRYCPQLFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFD 823 (959)
Q Consensus 778 ~~~~~p~~~l~s~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~li~ 823 (959)
++...+..+. ++++.++...+...... +. -..+..+..++.
T Consensus 712 ~~~~~~~~~~--~~l~~~~~~l~~~~~~~-~~--~~~l~l~~~li~ 752 (963)
T 2x19_B 712 SVKTLLDDFA--PMVPQLCEMLGRMYSTI-PQ--ASALDLTRQLVH 752 (963)
T ss_dssp HHHHSSSTTG--GGHHHHHHHHHHHHHHS-CC--HHHHHHHHHHHH
T ss_pred HHHhhccccc--ccHHHHHHHHHHHHHcC-Cc--cHHHHHHHHHHH
Confidence 9887766553 35666666655544331 11 134444555543
No 23
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.10 E-value=0.0039 Score=77.78 Aligned_cols=159 Identities=8% Similarity=0.026 Sum_probs=107.9
Q ss_pred CcchhhHHHHHHHHhhcccCCccccchHHHhhhccC-C-CCcHHHHHHHHHHHHhhhhHHh---------hCCCChhhHH
Q 002148 449 EWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPK-L-PQQPQLLQTVCLTIGAYSKWFD---------AASSDPSILA 517 (959)
Q Consensus 449 ~w~~~Ea~l~~l~~l~e~~~~~~~~~l~~l~~~l~~-l-p~~~~v~~t~~~~ig~y~~~l~---------~~p~~~~~l~ 517 (959)
+-.-+-+++++++.+++.+.+ +.+..+++.+.+ + .+++.|+.+++..+.++.+-.. .......+++
T Consensus 471 ~p~vr~~a~~~lg~~~~~~~~---~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~ 547 (960)
T 1wa5_C 471 HIILRVDAIKYIYTFRNQLTK---AQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTE 547 (960)
T ss_dssp CHHHHHHHHHHHHHTGGGSCH---HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHH
T ss_pred CceehHHHHHHHHHHHhhCCH---HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHH
Confidence 445577899999999998742 345555554432 3 2378999999999999876322 0001124788
Q ss_pred HHHHHHHhccCCC----HH--HHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHH
Q 002148 518 SVLSILTSGMSTS----ED--TAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVI 591 (959)
Q Consensus 518 ~~l~~l~~~l~~~----~~--v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi 591 (959)
++++.++..++.. .+ ....+..++..+++...+.+.||.+.+++.+.+.+.......-+..-+..++|++|.++
T Consensus 548 ~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~ 627 (960)
T 1wa5_C 548 ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAIL 627 (960)
T ss_dssp HHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 8888888776653 21 34688899999999999999999999988877766531011113445567999999999
Q ss_pred hcCChHHHHHHHHHhhhhh
Q 002148 592 TELPQVDAKKALEMLCLPV 610 (959)
Q Consensus 592 ~~~p~~~~~~~l~~ll~p~ 610 (959)
.+..++....+.+.++.++
T Consensus 628 ~~~~~~~~~~~~~~~~p~~ 646 (960)
T 1wa5_C 628 NYTQRQNLPLLVDSMMPTF 646 (960)
T ss_dssp HTSCGGGHHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHH
Confidence 9866655555555555443
No 24
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.10 E-value=5.9e-05 Score=85.79 Aligned_cols=271 Identities=11% Similarity=0.047 Sum_probs=155.1
Q ss_pred CcchhhHHHHHHHHhhcccCCc-cccchHHHhhhccC---CCC-cHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHH
Q 002148 449 EWRPAEAALFCIRAISTYVSVV-EAEVMPQVMALLPK---LPQ-QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSIL 523 (959)
Q Consensus 449 ~w~~~Ea~l~~l~~l~e~~~~~-~~~~l~~l~~~l~~---lp~-~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l 523 (959)
++..+|+++.+++.+.+....+ ...+++.++..+.+ -++ ++.||..++.+++....++..+.+.......+++.+
T Consensus 143 ~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l 222 (462)
T 1ibr_B 143 TEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVV 222 (462)
T ss_dssp CHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 7888999999999998876322 23455555554432 122 689999999999987766654322111112234445
Q ss_pred HhccCCC-HHHHHHHHHHHHHHHHHhhhhhhCCHH-HHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCCh-----
Q 002148 524 TSGMSTS-EDTAAAAALAFRHICDDCRKKLCGYLD-GLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQ----- 596 (959)
Q Consensus 524 ~~~l~~~-~~v~~~A~~al~~lc~~c~~~L~~~~~-~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~----- 596 (959)
...+.++ .+++..++.+|..+++.+...+.++++ .+++.+...+.. .+.+.+...++.++.+......
T Consensus 223 ~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~v~~~a~~~l~~~~~~~~~~~~~~ 297 (462)
T 1ibr_B 223 CEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS-----DIDEVALQGIEFWSNVCDEEMDLAIEA 297 (462)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHC-----SSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445443 248999999999999999888889988 888877766643 3567788888887777654200
Q ss_pred -----------HHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCCcccHHHHHHHHhHHHH
Q 002148 597 -----------VDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFK 665 (959)
Q Consensus 597 -----------~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 665 (959)
......+...+..++..+-+.+........++.........++++.+...++ + .++..++|.+.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--~---~~~~~~~~~l~ 372 (462)
T 1ibr_B 298 SEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--D---DIVPHVLPFIK 372 (462)
T ss_dssp CCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--T---THHHHHHHHHH
T ss_pred ccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--H---HHHHHHHHHHH
Confidence 0000112222233333333334332111111111111223455555555443 2 23345666665
Q ss_pred HHHHhhcccHHHHHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHHhhcCCc----chhHhHHHHHHHhCC
Q 002148 666 AIFDIRAWDMRTMESLCRACKYAVRTSK-RFMGITIGAILEEIQGLYQQHQQP----CFLYLSSEVIKIFGS 732 (959)
Q Consensus 666 ~il~~~~~~~~i~e~~~~~l~~~~~~~~-~~~~~~l~~l~~~l~~~~~~~~~~----~~L~l~~~li~~~~~ 732 (959)
..+. ..+..++++++.+++.+....+ ..+.++++.++..+...+.. +++ ...++++.+...++.
T Consensus 373 ~~l~--~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d-~~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 373 EHIK--NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD-PSVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp HHTT--CSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHGGG
T ss_pred HHhc--CCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhccc
Confidence 5543 3456788999999887665443 23344555556555554432 222 235666666666654
No 25
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.00 E-value=9.6e-05 Score=75.83 Aligned_cols=185 Identities=11% Similarity=0.160 Sum_probs=131.9
Q ss_pred CCCcchhhHHHHHHHH-hhcccCCcc--ccchHHHhhhccC-C--CCcHHHHHHHHHHHHhhhhHHh-hCCCCh-hhHHH
Q 002148 447 HNEWRPAEAALFCIRA-ISTYVSVVE--AEVMPQVMALLPK-L--PQQPQLLQTVCLTIGAYSKWFD-AASSDP-SILAS 518 (959)
Q Consensus 447 ~~~w~~~Ea~l~~l~~-l~e~~~~~~--~~~l~~l~~~l~~-l--p~~~~v~~t~~~~ig~y~~~l~-~~p~~~-~~l~~ 518 (959)
+.+|.++-+++-.++. +.++++.-. ......++..+.. + ..|+.++..++.++|.+++-+. .. +. .+...
T Consensus 27 s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~--f~~~y~~~ 104 (249)
T 2qk1_A 27 SSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPG--FSKDYVSL 104 (249)
T ss_dssp CSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTT--SCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccc--ccHHHHHH
Confidence 5789999999999999 887654322 2223455555433 3 3489999999999999998886 32 33 48888
Q ss_pred HHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhhh-CCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCCh
Q 002148 519 VLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLC-GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQ 596 (959)
Q Consensus 519 ~l~~l~~~l~~~~-~v~~~A~~al~~lc~~c~~~L~-~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~ 596 (959)
+++.++..+++.. .|+.+|..|+..||+.+.+... ++++.+++.+...+.. . ....|...+..++.++...+.
T Consensus 105 llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~----k-~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 105 VFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKH----K-TPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTC----S-SHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcC----C-ChHHHHHHHHHHHHHHHHcCC
Confidence 9999999888753 4899999999999999866332 4499999988888764 2 568899999999999987664
Q ss_pred --HHHHHHHHHhh-hhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCC
Q 002148 597 --VDAKKALEMLC-LPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNH 649 (959)
Q Consensus 597 --~~~~~~l~~ll-~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 649 (959)
+...+ .+ .+++..+.+++..... ..| ..+.++++.+.+.++.
T Consensus 180 ~~~~l~~----~l~~~iip~l~~~l~D~~~-----~VR--~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 180 GYSTLQR----YLKDEVVPIVIQIVNDTQP-----AIR--TIGFESFAILIKIFGM 224 (249)
T ss_dssp CSHHHHH----HHTTTHHHHHHHHHTCSSH-----HHH--HHHHHHHHHHHHHHCS
T ss_pred cchhHHH----HHHHHHHHHHHHHhcCCCH-----HHH--HHHHHHHHHHHHHhCH
Confidence 33334 44 5555555666654321 122 2357788888877764
No 26
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.78 E-value=0.00016 Score=74.14 Aligned_cols=178 Identities=11% Similarity=0.133 Sum_probs=122.1
Q ss_pred CCCcchhhHHHHHHHHhhcccCCccccchHHHhhhccC-C--CCcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHH
Q 002148 447 HNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPK-L--PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSIL 523 (959)
Q Consensus 447 ~~~w~~~Ea~l~~l~~l~e~~~~~~~~~l~~l~~~l~~-l--p~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l 523 (959)
+.+|..+.+++..+..+.++.+.-....+.+++..+.. + ..|+.|+..++.++|.++.-+... ...+.+.+++.+
T Consensus 26 s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~--~~~~~~~ilp~l 103 (242)
T 2qk2_A 26 EKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKR--FSNYASACVPSL 103 (242)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGG--GHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHH
Confidence 57899999999999999887543222234555555433 3 248999999999999999877543 224788899999
Q ss_pred HhccCCCH-HHHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCChHH-HHH
Q 002148 524 TSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVD-AKK 601 (959)
Q Consensus 524 ~~~l~~~~-~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~-~~~ 601 (959)
+..+++++ .++..|+.|+..++..+ .++.++..+...+.. -+...|..++..++.++....++. ...
T Consensus 104 l~~l~d~~~~vr~~a~~aL~~~~~~~------~~~~ll~~l~~~l~~-----~~~~vr~~~l~~l~~~l~~~~~~~~~~~ 172 (242)
T 2qk2_A 104 LEKFKEKKPNVVTALREAIDAIYAST------SLEAQQESIVESLSN-----KNPSVKSETALFIARALTRTQPTALNKK 172 (242)
T ss_dssp HHGGGCCCHHHHHHHHHHHHHHHTTS------CHHHHHHHHHHHTTC-----SCHHHHHHHHHHHHHHHTTCCGGGCCHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHcC-----CChHHHHHHHHHHHHHHHHcCCCCccHH
Confidence 99888764 48999999999998754 356677777666653 257889999999999988875442 335
Q ss_pred HHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcC
Q 002148 602 ALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVN 648 (959)
Q Consensus 602 ~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 648 (959)
++..++..+ ..++..... ..| ..+.++++.+.+.++
T Consensus 173 ~l~~l~p~l----~~~l~D~~~-----~VR--~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 173 LLKLLTTSL----VKTLNEPDP-----TVR--DSSAEALGTLIKLMG 208 (242)
T ss_dssp HHHHHHHHH----HHHHTSSCH-----HHH--HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH----HHHhcCCCh-----HHH--HHHHHHHHHHHHHcC
Confidence 555544444 444432211 122 234667777766554
No 27
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.77 E-value=0.12 Score=60.51 Aligned_cols=461 Identities=12% Similarity=0.054 Sum_probs=229.4
Q ss_pred CCCHHHHHHHHHHHHHHhc-ChhhHHHHHHHhcc--CCCChhHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHHHHHHHH
Q 002148 17 HPDDAVRMQADRWLQDFQH-TIDAWQVADNLLHD--ATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKK 93 (959)
Q Consensus 17 ~~d~~~r~~A~~~L~~~q~-s~~aw~~~~~lL~~--~~~~~~~~~faa~~L~~ki~~~w~~l~~~~~~~lr~~Ll~~l~~ 93 (959)
++|.+.|+-.--++..+-+ .++.-.++..-+.+ .+.++.+|-.|+.+|-+-. +++-...+-..+...+.
T Consensus 81 s~~~~~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~-------~~~~~~~l~~~l~~~L~- 152 (618)
T 1w63_A 81 SQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG-------SSEMCRDLAGEVEKLLK- 152 (618)
T ss_dssp SSSHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHH-
T ss_pred CCchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHc-
Confidence 4566666666666665543 34432333222221 1355567777777665432 22222333333333333
Q ss_pred hcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCC-CchhhHHHHhcccccccccccccCChhHHHHHHH
Q 002148 94 FHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHP-EFVPGFLELLTVLPEEVFNYKIAARPERRRQFEK 172 (959)
Q Consensus 94 ~~~~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~l~~~~-~~~~~~L~~L~~l~EE~~~~~~~l~~~~r~~l~~ 172 (959)
..+.+||++-+.++..++...+ +.-++ +++.+...+.... ......+..|..+.+.- + ....
T Consensus 153 --~~~~~VRk~A~~al~~l~~~~p-~~v~~--~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~--------~----~~~~ 215 (618)
T 1w63_A 153 --TSNSYLRKKAALCAVHVIRKVP-ELMEM--FLPATKNLLNEKNHGVLHTSVVLLTEMCERS--------P----DMLA 215 (618)
T ss_dssp --SCCHHHHHHHHHHHHHHHHHCG-GGGGG--GGGGTTTSTTCCCHHHHHHHHHHHHHHCCSH--------H----HHHH
T ss_pred --CCCHHHHHHHHHHHHHHHHHCh-HHHHH--HHHHHHHHhCCCCHhHHHHHHHHHHHHHHhC--------h----HHHH
Confidence 3678999999999999987543 22333 5555555554332 23345566666554321 1 1123
Q ss_pred HHHHhHHHHHHHHHHhhh-------------hhHhHHHHHHHHHHHHhccCCCCCcccccchhHHHHHhcCC------C-
Q 002148 173 ELTSQMEVALSTLTACLH-------------INELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLH------S- 232 (959)
Q Consensus 173 ~l~~~~~~vl~~l~~~l~-------------~~~~~~~~l~~~~sWi~~~~~~~~~~~~~~~ll~~~~~~L~------~- 232 (959)
.+....+.++.+|.+... ++-.+..+++++....... | + ....+++.+...+. +
T Consensus 216 ~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~---~-~--~~~~~~~~L~~l~~~~~~~~~~ 289 (618)
T 1w63_A 216 HFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRND---D-D--SSEAMNDILAQVATNTETSKNV 289 (618)
T ss_dssp HHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTC---H-H--HHHTTHHHHHHHHHTSCCSSTH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCC---H-H--HHHHHHHHHHHHHhccccccch
Confidence 345566777777766532 2335666777777654421 1 0 01123333333221 1
Q ss_pred -CchHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhhhcCCCHHHHHHHHHHHHHhhhHHHHHHhcCC
Q 002148 233 -EILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGS 311 (959)
Q Consensus 233 -~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~l~~~~~d~e~~~~l~~l~~~~~~~~~~~l~~~~ 311 (959)
..+.-.|+.++..+ .. ...+.....+.+. .-+. +.|.+........+..++...+..+.
T Consensus 290 ~~aV~~ea~~~i~~l---~~---------~~~l~~~a~~~L~---~~L~--~~d~~vr~~aL~~L~~i~~~~p~~~~--- 349 (618)
T 1w63_A 290 GNAILYETVLTIMDI---KS---------ESGLRVLAINILG---RFLL--NNDKNIRYVALTSLLKTVQTDHNAVQ--- 349 (618)
T ss_dssp HHHHHHHHHHHHHHS---CC---------CHHHHHHHHHHHH---HHHT--CSSTTTHHHHHHHHHHHHHHHHHHHG---
T ss_pred HHHHHHHHHHHHHhc---CC---------CHHHHHHHHHHHH---HHHh--CCCCchHHHHHHHHHHHHhhCHHHHH---
Confidence 12233344444331 11 0112221122211 1121 22333222333556666666665543
Q ss_pred chHHHHHHHHHhhccCCCcchhhhhHHhHHHhHHHHhhcccccccCcccchHHHHHHHHhhhHHHHHHHHHHHHhhccCC
Q 002148 312 DESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYP 391 (959)
Q Consensus 312 ~~~~~~l~~ll~~~~~~~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p 391 (959)
.....++.|...+|..|...+++-.+.+.+. .-..+++.+++..+-.
T Consensus 350 ----~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~------------------------~nv~~iv~eL~~~l~~----- 396 (618)
T 1w63_A 350 ----RHRSTIVDCLKDLDVSIKRRAMELSFALVNG------------------------NNIRGMMKELLYFLDS----- 396 (618)
T ss_dssp ----GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCS------------------------SSTHHHHHHHHHHHHH-----
T ss_pred ----HHHHHHHHHccCCChhHHHHHHHHHHHHccc------------------------ccHHHHHHHHHHHHHh-----
Confidence 3455677788888889998888865443210 0012233333332211
Q ss_pred CCCCCCChhhhHHHHHHHHHhhHHHHHhhhccC--hHHHHHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHhhcccCC
Q 002148 392 QDYQDLSLEDLKEFKHTRYAVADVLIDAASVLG--GDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSV 469 (959)
Q Consensus 392 ~d~~~~~~d~~~~f~~~R~~~~d~l~~~~~il~--~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~l~e~~~~ 469 (959)
. | .+||..+...+..++.... ...++..+.+.+.... ++-.-| .+..+..+....++
T Consensus 397 ~-----d-------~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~--------~~v~~~-~~~~l~~ii~~~p~ 455 (618)
T 1w63_A 397 C-----E-------PEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAG--------SYVRDD-AVPNLIQLITNSVE 455 (618)
T ss_dssp C-----C-------HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTG--------GGSCSS-HHHHHHHHHHHSCS
T ss_pred C-----C-------HHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhcc--------chhHHH-HHHHHHHHHhcChh
Confidence 0 1 2477777777777776543 2456666665555431 122222 33344444443332
Q ss_pred ccccchHHHhhhccCCCCcHHHHHHHHHHHHhhhhHHhhC------CC--ChhhHHHHHHHHHhccCCCHHHHHHHHHHH
Q 002148 470 VEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAA------SS--DPSILASVLSILTSGMSTSEDTAAAAALAF 541 (959)
Q Consensus 470 ~~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~------p~--~~~~l~~~l~~l~~~l~~~~~v~~~A~~al 541 (959)
-....+..++..+..-..+..+...++|++|.|++.+... |. .+..+..++..++.....+..++..+..|+
T Consensus 456 l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~ 535 (618)
T 1w63_A 456 MHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAI 535 (618)
T ss_dssp THHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 2233456666666532223344557899999999988641 10 011344455445443333434899999999
Q ss_pred HHHHHHhhhhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHH
Q 002148 542 RHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVI 591 (959)
Q Consensus 542 ~~lc~~c~~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi 591 (959)
.|+...+.. ..+.+...+..... ..+.+.|.+.++....+.
T Consensus 536 ~Kl~~~~~~----~~~~l~~~L~~~~~-----~~d~evrdRA~~y~~ll~ 576 (618)
T 1w63_A 536 MKLSTRFTC----TVNRIKKVVSIYGS-----SIDVELQQRAVEYNALFK 576 (618)
T ss_dssp HHHHTTCSS----CHHHHHHHHHHHTT-----CSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCcc----hHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHHc
Confidence 999875532 23334444433332 245677777777665443
No 28
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.55 E-value=0.37 Score=59.97 Aligned_cols=300 Identities=9% Similarity=0.084 Sum_probs=165.3
Q ss_pred CcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccC----CCHHHHHHHHHHHHHHHHHhhhhhhCCHHHHHHH
Q 002148 487 QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMS----TSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNV 562 (959)
Q Consensus 487 ~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~----~~~~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~ 562 (959)
.+.+-+.+++..+|+.++-...... ..++.+++.+ ..+. ++. |+..|+.++.++++-...+- .+++.+++.
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~~--~~l~~l~~~l-~~l~~~d~~~~-vr~~a~~~l~~~~~~l~~~~-~~l~~vl~~ 550 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEEK--RQIPRLMRVL-AEIPYEKLNVK-LLGTALETMGSYCNWLMENP-AYIPPAINL 550 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC--------CHHHHHHHHH-HHSCTTTSCHH-HHHHHHHHHHHTHHHHC-----CHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhhh--HHHHHHHHHH-HhcCccccCHH-HHHHHHHHHHHHHHHHhcCH-HHHHHHHHH
Confidence 3557888999999999876554321 3788888844 3343 344 99999999999998765432 577777776
Q ss_pred HHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHH
Q 002148 563 YRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAY 642 (959)
Q Consensus 563 ~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 642 (959)
+...++ + ..+.....++..++... ...+..++.++++.+..+++.... ........+++++.
T Consensus 551 l~~~l~-~-------~v~~~A~~al~~l~~~~-----~~~l~p~~~~ll~~l~~~l~~~~~-----~~~~~~~~~~ai~~ 612 (971)
T 2x1g_F 551 LVRGLN-S-------SMSAQATLGLKELCRDC-----QLQLKPYADPLLNACHASLNTGRM-----KNSDSVRLMFSIGK 612 (971)
T ss_dssp HHHHHH-S-------SCHHHHHHHHHHHHHHC-----HHHHHHHHHHHHHHHHHHHHSTTS-----CHHHHHHHHHHHHH
T ss_pred HHHHhC-h-------HHHHHHHHHHHHHHHHH-----HHhccccHHHHHHHHHHHHcCCCC-----ChHHHHHHHHHHHH
Confidence 666553 1 24666677777777543 234556677777777777775321 11223345788888
Q ss_pred HhhhcCCcccHHHHHHHHhHHHHHHHHhhcc----cHHHHHHHH---HHHHHHHHHhhh-------------hhhhhHHH
Q 002148 643 IFRYVNHPEAVADAIQRLWPIFKAIFDIRAW----DMRTMESLC---RACKYAVRTSKR-------------FMGITIGA 702 (959)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~----~~~i~e~~~---~~l~~~~~~~~~-------------~~~~~l~~ 702 (959)
++.... ++...+++..+++.+...+..... +.+-..... ..+..+++.++. .+.++++.
T Consensus 613 i~~~~~-~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 691 (971)
T 2x1g_F 613 LMSLLR-PEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQR 691 (971)
T ss_dssp HHHTSC-TTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHT
T ss_pred HHHhCC-HHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHH
Confidence 887654 444555555554433333322211 222222222 233344444432 23455555
Q ss_pred HHHHHHHHHhhcC-C----cchhHhHHHHHHHhCCCccchHHHHHHHHHHHHHHHHhhcCcccCCCCCCcHHHHHHHHHH
Q 002148 703 ILEEIQGLYQQHQ-Q----PCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASR 777 (959)
Q Consensus 703 l~~~l~~~~~~~~-~----~~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pDl~~~~f~l~~~ 777 (959)
+++.+...+.... . .....+++.++..+|.+ ..+.+..++. ..+..++ .++. ..++.+++.
T Consensus 692 i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~--~~p~l~~~~~----~l~~~~~------~~~~--~~~l~l~~~ 757 (971)
T 2x1g_F 692 TMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSS--FQPMLQDLCL----FIVASFQ------TRCC--APTLEISKT 757 (971)
T ss_dssp THHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC----CTHHHHHHH----HHHHHCC--------CC--HHHHHHHHH
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhh--ccccHHHHHH----HHHHHHh------cCCc--hHHHHHHHH
Confidence 6665555554432 1 23456777778888776 4454444332 2222232 2222 458899999
Q ss_pred HHhhCCCc--ccC--cCChHHHHHHHHHhccC-------CCchhHHHHHHHHHHhhcC
Q 002148 778 CIRYCPQL--FIP--SSVFPSLVDCSMIGITV-------QHREASNSILTFLSDIFDL 824 (959)
Q Consensus 778 ~~~~~p~~--~l~--s~~l~~~~~~~~~~l~~-------~~~~~~~~~~~fl~~li~~ 824 (959)
+++..... ..+ .+.+..++......+.. ++++..++.+.|+..++..
T Consensus 758 ~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~ 815 (971)
T 2x1g_F 758 AIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKK 815 (971)
T ss_dssp HHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHS
T ss_pred HHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHh
Confidence 99864331 100 12233334433332322 4678889999999999865
No 29
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.45 E-value=0.0023 Score=65.41 Aligned_cols=165 Identities=14% Similarity=0.142 Sum_probs=120.4
Q ss_pred CCCcchhhHHHHHHHHhhcccC-Cccc-cchHHHhhhccC-CC-CcHHHHHHHHHHHHhhhhHHhhCCCCh-hhHHHHHH
Q 002148 447 HNEWRPAEAALFCIRAISTYVS-VVEA-EVMPQVMALLPK-LP-QQPQLLQTVCLTIGAYSKWFDAASSDP-SILASVLS 521 (959)
Q Consensus 447 ~~~w~~~Ea~l~~l~~l~e~~~-~~~~-~~l~~l~~~l~~-lp-~~~~v~~t~~~~ig~y~~~l~~~p~~~-~~l~~~l~ 521 (959)
+.+-.-+++++.+++.+++++. ..-. .+...++..+.. +. .++.|+..+...+-.+.+... |... .+++.+++
T Consensus 72 D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~--~~~~~~~l~~ll~ 149 (249)
T 2qk1_A 72 DANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYD--PLASSGRNEDMLK 149 (249)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSC--TTCTTCTTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcc--ccccCCcHHHHHH
Confidence 4566778999999999999887 5555 565555554432 32 367888887777776665442 1110 13778888
Q ss_pred HHHhccCCCH-HHHHHHHHHHHHHHHHhh---hhhhCCH-HHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCCh
Q 002148 522 ILTSGMSTSE-DTAAAAALAFRHICDDCR---KKLCGYL-DGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQ 596 (959)
Q Consensus 522 ~l~~~l~~~~-~v~~~A~~al~~lc~~c~---~~L~~~~-~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~ 596 (959)
.++.++++++ .++..+...+.++++..+ ..+.+++ +.++..+.+.+.. -..+.|...+++++.+...++.
T Consensus 150 ~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D-----~~~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 150 DILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVND-----TQPAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTC-----SSHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHHhCH
Confidence 8888888753 489999999999999887 4677888 8999998888853 3678999999999999999888
Q ss_pred HHHHHHHHHhhhhhHHHHHHHH
Q 002148 597 VDAKKALEMLCLPVVTPLQEII 618 (959)
Q Consensus 597 ~~~~~~l~~ll~p~~~~l~~~~ 618 (959)
+...+++..+-..-..+++..+
T Consensus 225 ~~~~p~l~~Ld~~k~~ki~~~~ 246 (249)
T 2qk1_A 225 NTFVKTLEHLDNLKRKKIEETV 246 (249)
T ss_dssp GGGHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHH
Confidence 7777777776555455555444
No 30
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.34 E-value=0.016 Score=71.62 Aligned_cols=311 Identities=12% Similarity=0.121 Sum_probs=173.9
Q ss_pred cHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccCC-----CH-HHHHHHHHHHHHHHHHhhhhhhCCHHHHHH
Q 002148 488 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMST-----SE-DTAAAAALAFRHICDDCRKKLCGYLDGLYN 561 (959)
Q Consensus 488 ~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~-----~~-~v~~~A~~al~~lc~~c~~~L~~~~~~ll~ 561 (959)
+-..+.++++.+|+.++=..... ...+++.+++.++.-+.+ ++ .++..+++++.++|+=.+.+ ..+++.+++
T Consensus 466 ~W~~~EA~~~a~gaIa~~~~~~~-e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~-~~~L~~vl~ 543 (1023)
T 4hat_C 466 SWHNINTLSWAIGSISGTMSEDT-EKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLRTVIL 543 (1023)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHH-HHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHC-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCchh-HHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHH
Confidence 67889999999999876332210 013788888888765532 22 24556778888888755432 134666666
Q ss_pred HHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHH--------HHhhhhhHHHHHHHHhcCCCcccccCchhh
Q 002148 562 VYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKAL--------EMLCLPVVTPLQEIINQGPEILQKKHPRDL 633 (959)
Q Consensus 562 ~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l--------~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~ 633 (959)
.+...+.. -.+..+.....|+..+...- ...+ ..++.++++.+.++..... .+..
T Consensus 544 ~L~~~l~~-----~~~~v~~~A~~al~~l~~~c-----~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~-------~~~~ 606 (1023)
T 4hat_C 544 KLFEFMHE-----THEGVQDMACDTFIKIVQKC-----KYHFVIQQPRESEPFIQTIIRDIQKTTADLQ-------PQQV 606 (1023)
T ss_dssp HHHHHTTC-----SCHHHHHHHHHHHHHHHHHH-----THHHHSCCTTCSSCHHHHHHHTHHHHHTTSC-------HHHH
T ss_pred HHHHHhhc-----CCHHHHHHHHHHHHHHHHHH-----HHHhhccCCCCCchhHHHHHHHHHHHHHhCC-------HHHH
Confidence 66555421 12345666666666666532 2222 1245555566666655321 2334
Q ss_pred hHHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhc----------ccHHHH---HHHHHHHHHHHHHhhhhhhhhH
Q 002148 634 TVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRA----------WDMRTM---ESLCRACKYAVRTSKRFMGITI 700 (959)
Q Consensus 634 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~----------~~~~i~---e~~~~~l~~~~~~~~~~~~~~l 700 (959)
....+.++.+++..........+++.+++.+........ .|++.. -.++++......++|..+.|++
T Consensus 607 ~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f~~~~ 686 (1023)
T 4hat_C 607 HTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQL 686 (1023)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHHHHHHH
Confidence 456789999998876433344556666654444332211 122222 3345555566677888888888
Q ss_pred HHHHHHHHHHHhhcC----------------Cc--c--------hhHhHHHHHHHhCCCccchHHHHHHHHHHHHHHHHh
Q 002148 701 GAILEEIQGLYQQHQ----------------QP--C--------FLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCL 754 (959)
Q Consensus 701 ~~l~~~l~~~~~~~~----------------~~--~--------~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~ 754 (959)
.++...+...|+... .+ . .|.++...+.. .++......+++.+++..++.-
T Consensus 687 ~~i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~---~~~~~~~~~~~~~~l~~~vl~d 763 (1023)
T 4hat_C 687 GHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISK---ARNLDDVVKVLVEPLLNAVLED 763 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHH---CSCHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhc---CCCHHHHHHHhHHHHHHHHHHH
Confidence 877776666555320 00 0 11222222222 2222223344445555554443
Q ss_pred hcCcccCCCCCCcH-HHHHHHHHHHHhhCCCcccC--cCChHHHHHHHHHhcc---CCCchhHHHHHHHHHHhhcCc
Q 002148 755 LTSIEEFTSRPDVA-DDCFLLASRCIRYCPQLFIP--SSVFPSLVDCSMIGIT---VQHREASNSILTFLSDIFDLA 825 (959)
Q Consensus 755 l~~~~~~~~~pDl~-~~~f~l~~~~~~~~p~~~l~--s~~l~~~~~~~~~~l~---~~~~~~~~~~~~fl~~li~~~ 825 (959)
.. +..|+.+ .+++.+++.++++....+.+ ...++.++.+.+.-++ ..+|+....-++++..+...+
T Consensus 764 Y~-----~~~~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~ 835 (1023)
T 4hat_C 764 YM-----NNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKS 835 (1023)
T ss_dssp HH-----HSCGGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHC
T ss_pred HH-----hCChhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHC
Confidence 33 2345544 44778888888876554332 2356777777655454 367777778888888877654
No 31
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.24 E-value=0.033 Score=65.07 Aligned_cols=210 Identities=12% Similarity=0.127 Sum_probs=112.7
Q ss_pred CCCcchhhHHHHHHHHhhcccCCcc-ccchHHHhhhccCCCCcHHHHHHHHHHHHhhhhHHhhCCCChhhHH--HHHHHH
Q 002148 447 HNEWRPAEAALFCIRAISTYVSVVE-AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILA--SVLSIL 523 (959)
Q Consensus 447 ~~~w~~~Ea~l~~l~~l~e~~~~~~-~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~--~~l~~l 523 (959)
+++...+..++.+++.++ .++- ...++.+...+. ..+|.||++++.++++... .+|+ .++ .+++.+
T Consensus 97 ~~n~~ir~~AL~~L~~i~---~~~~~~~l~~~l~~~L~--d~~~~VRk~A~~al~~i~~---~~p~---~~~~~~~~~~l 165 (591)
T 2vgl_B 97 DPNPLIRALAVRTMGCIR---VDKITEYLCEPLRKCLK--DEDPYVRKTAAVCVAKLHD---INAQ---MVEDQGFLDSL 165 (591)
T ss_dssp SSSHHHHHHHHHHHHTCC---SGGGHHHHHHHHHHHSS--CSCHHHHHHHHHHHHHHHH---SSCC---CHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHcC--CCChHHHHHHHHHHHHHHh---hChh---hcccccHHHHH
Confidence 345555667777777664 2211 122333444443 3489999999999998765 5676 454 577888
Q ss_pred HhccCCCH-HHHHHHHHHHHHHHHHhhhh-hhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCChHHHHH
Q 002148 524 TSGMSTSE-DTAAAAALAFRHICDDCRKK-LCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKK 601 (959)
Q Consensus 524 ~~~l~~~~-~v~~~A~~al~~lc~~c~~~-L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~ 601 (959)
...+.+++ .|+..|..+|.++|.+.... .....+..+..+.+.+.. .++..+..+++.++.+... ++++...
T Consensus 166 ~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~-----~~~~~q~~il~~l~~l~~~-~~~~~~~ 239 (591)
T 2vgl_B 166 RDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNE-----CTEWGQIFILDCLSNYNPK-DDREAQS 239 (591)
T ss_dssp HHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHH-----CCHHHHHHHHHHHHTSCCC-SHHHHHH
T ss_pred HHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCC-----CCchHHHHHHHHHHHhCCC-ChHHHHH
Confidence 88887764 49999999999998764432 233444444444333332 3466777888766544311 1122222
Q ss_pred HHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhc-CCcccHHHHHHHHhHHHHHHHHhhcccHHHHHH
Q 002148 602 ALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYV-NHPEAVADAIQRLWPIFKAIFDIRAWDMRTMES 680 (959)
Q Consensus 602 ~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~ 680 (959)
++.++ ...+... ...-...++.++..+.... ..++........+.+.+..++ ..++.+.-.
T Consensus 240 ----~l~~l----~~~l~~~-------~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~---~~d~~vr~~ 301 (591)
T 2vgl_B 240 ----ICERV----TPRLSHA-------NSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL---SGEPEVQYV 301 (591)
T ss_dssp ----HHHHH----TTCSCSS-------TTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT---TSCHHHHHH
T ss_pred ----HHHHH----HHHHcCC-------ChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh---cCCccHHHH
Confidence 22222 1112111 1111222344444443322 123334444455555554443 256677777
Q ss_pred HHHHHHHHHHH
Q 002148 681 LCRACKYAVRT 691 (959)
Q Consensus 681 ~~~~l~~~~~~ 691 (959)
+++.+..+...
T Consensus 302 aL~~l~~i~~~ 312 (591)
T 2vgl_B 302 ALRNINLIVQK 312 (591)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77777766554
No 32
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.23 E-value=0.46 Score=54.40 Aligned_cols=385 Identities=13% Similarity=0.081 Sum_probs=197.1
Q ss_pred HHHHHhcCC--CCchHHHHHHHHHHHHhhhccCCCCCCCCchhHHH-HHHHHHHhhHHHhhhcCCCHHHHHHHHHHHHHh
Q 002148 223 VLTALSSLH--SEILSEASVNVISELIHYSAAGSSGGATVNMPLIQ-VIVPQIMSLKAHLTDSSKDEEDVKAIARLFADM 299 (959)
Q Consensus 223 l~~~~~~L~--~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~-~l~~~v~~l~~~l~~~~~d~e~~~~l~~l~~~~ 299 (959)
++.++..|. +++.+..|+.++..+++..... ....++. .+++.++. .+ ....+.+.....+..+..+
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~------~~~~~~~~g~v~~Lv~---lL-~~~~~~~v~~~A~~~L~~l 145 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSP------PIEEVIQSGVVPRFVQ---FL-TREDFPQLQFEAAWALTNI 145 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSC------CHHHHHHTTCHHHHHH---HH-TCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCc------hHHHHHHCCCHHHHHH---Hh-CCCCCHHHHHHHHHHHHHH
Confidence 444444554 3467888999999888654311 1111221 12233222 22 1222244444455555555
Q ss_pred hhH---HHHHHhcCCchHHHHHHHHHhhccCCCcchhhhhHHhHHHhHHHHhhcccccccCcccchHHHHHHHHhhhHHH
Q 002148 300 GDS---YVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSA 376 (959)
Q Consensus 300 ~~~---~~~~l~~~~~~~~~~l~~ll~~~~~~~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (959)
+.. ....+... ..++.++.+...++.++...++..+..+...-. ..+..
T Consensus 146 ~~~~~~~~~~~~~~-----g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~-----------------------~~~~~ 197 (528)
T 4b8j_A 146 ASGTSENTKVVIDH-----GAVPIFVKLLGSSSDDVREQAVWALGNVAGDSP-----------------------KCRDL 197 (528)
T ss_dssp HTSCHHHHHHHHHT-----THHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCH-----------------------HHHHH
T ss_pred hCCCHHHHHHHHhC-----CcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCh-----------------------hhHHH
Confidence 432 22222211 357777888788888888888877666543110 00111
Q ss_pred HH--HHHHHHHhhccCCCCCCCCChhhhHHHHHHHHHhhHHHHHhhhccC--hHHHHHHHHHHHHHhhhhcCCCCCCcch
Q 002148 377 YE--SLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYAVADVLIDAASVLG--GDATLKILYIKFVEGVACCGNKHNEWRP 452 (959)
Q Consensus 377 ~~--~Ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~d~l~~~~~il~--~~~~l~~l~~~l~~~~~~~~~~~~~w~~ 452 (959)
+. ..+..++..+...+ + ...|..+..++..++.--. .......+.+.|.+.+ . +.++.-
T Consensus 198 i~~~g~l~~Ll~lL~~~~-----~-------~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL----~-~~~~~v 260 (528)
T 4b8j_A 198 VLANGALLPLLAQLNEHT-----K-------LSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLI----H-SNDEEV 260 (528)
T ss_dssp HHHTTCHHHHHHTCCTTC-----C-------HHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHT----T-CCCHHH
T ss_pred HHHCCcHHHHHHHHhcCC-----C-------HHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHH----C-CCCHHH
Confidence 11 12333333332111 1 1245555566666654311 1112222334444433 1 456888
Q ss_pred hhHHHHHHHHhhcccCCc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhhhhHHhh------CCCChhhHHHHHH
Q 002148 453 AEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDA------ASSDPSILASVLS 521 (959)
Q Consensus 453 ~Ea~l~~l~~l~e~~~~~-----~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~------~p~~~~~l~~~l~ 521 (959)
.+.++++++.++...... +...++.++..+.. .++.++..++.++|..+.--.. +.. .++.++.
T Consensus 261 ~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~---~l~~L~~ 335 (528)
T 4b8j_A 261 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH--PSPSVLIPALRTVGNIVTGDDAQTQCIIDHQ---ALPCLLS 335 (528)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTT---HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcC--CChhHHHHHHHHHHHHHcCCHHHHHHHHHhh---hHHHHHH
Confidence 899999999998654321 12456666666643 2688999999999988741110 111 4555555
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHhhh---hhh--CCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCCh
Q 002148 522 ILTSGMSTSEDTAAAAALAFRHICDDCRK---KLC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQ 596 (959)
Q Consensus 522 ~l~~~l~~~~~v~~~A~~al~~lc~~c~~---~L~--~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~ 596 (959)
.+... .+ ..++..|+.++.+++..... .+. ..++.++..+.. -+.+.+...+.+++.+.....+
T Consensus 336 lL~~~-~~-~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~---------~~~~v~~~a~~aL~nl~~~~~~ 404 (528)
T 4b8j_A 336 LLTQN-LK-KSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQT---------AEFDIKKEAAWAISNATSGGSH 404 (528)
T ss_dssp HHHSC-CC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHH---------SCHHHHHHHHHHHHHHHHHSCH
T ss_pred HHcCC-Cc-HHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhc---------CCHHHHHHHHHHHHHHHcCCCH
Confidence 54321 12 34999999999999964332 222 345555554432 1467888999999998877444
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCC--------cccHHHHHHHH--hHHHHH
Q 002148 597 VDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNH--------PEAVADAIQRL--WPIFKA 666 (959)
Q Consensus 597 ~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--------~~~~~~~~~~~--~~~l~~ 666 (959)
+......+ ...+..+-.++.... .......+..|..+++.... .++....+.+. +..+..
T Consensus 405 ~~~~~l~~---~~~i~~L~~lL~~~d-------~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~ 474 (528)
T 4b8j_A 405 DQIKYLVS---EGCIKPLCDLLICPD-------IRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIEN 474 (528)
T ss_dssp HHHHHHHH---TTCHHHHHHGGGCSC-------HHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHH---CCCHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHH
Confidence 33322221 133344444444321 12223345666666553321 12334333332 333333
Q ss_pred HHHhhcccHHHHHHHHHHHHHHHH
Q 002148 667 IFDIRAWDMRTMESLCRACKYAVR 690 (959)
Q Consensus 667 il~~~~~~~~i~e~~~~~l~~~~~ 690 (959)
+. ...+.++.+.+..++...+.
T Consensus 475 L~--~~~~~~v~~~a~~il~~~~~ 496 (528)
T 4b8j_A 475 LQ--SHDNNEIYEKAVKILEAYWM 496 (528)
T ss_dssp GG--GCSSHHHHHHHHHHHHHHCC
T ss_pred HH--cCCCHHHHHHHHHHHHHHCC
Confidence 32 23466788888877776554
No 33
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.19 E-value=0.016 Score=59.06 Aligned_cols=187 Identities=11% Similarity=0.023 Sum_probs=126.2
Q ss_pred cHHHHHHHHHHHHhhhhHHhhCCCC-hhhHHHHHHHHHhccC-CCH-HHHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHH
Q 002148 488 QPQLLQTVCLTIGAYSKWFDAASSD-PSILASVLSILTSGMS-TSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYR 564 (959)
Q Consensus 488 ~~~v~~t~~~~ig~y~~~l~~~p~~-~~~l~~~l~~l~~~l~-~~~-~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~ 564 (959)
+...|..++..++...+- +|.. ...+..+++.+...+. +++ .|+..|+.++..++...+..+.+|.+.++..+.
T Consensus 28 ~w~~R~~a~~~L~~l~~~---~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll 104 (242)
T 2qk2_A 28 KWTLRKESLEVLEKLLTD---HPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLL 104 (242)
T ss_dssp SHHHHHHHHHHHHHHHHH---CSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcc---CCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 678899999888877653 2210 0124567777777773 443 489999999999999999989999999999888
Q ss_pred HHhhccCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHh
Q 002148 565 TAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIF 644 (959)
Q Consensus 565 ~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 644 (959)
..+.. -....|....+++..++...+. ..++. .+...+...+ .+.-...+..|+.++
T Consensus 105 ~~l~d-----~~~~vr~~a~~aL~~~~~~~~~-------~~ll~----~l~~~l~~~~-------~~vr~~~l~~l~~~l 161 (242)
T 2qk2_A 105 EKFKE-----KKPNVVTALREAIDAIYASTSL-------EAQQE----SIVESLSNKN-------PSVKSETALFIARAL 161 (242)
T ss_dssp HGGGC-----CCHHHHHHHHHHHHHHHTTSCH-------HHHHH----HHHHHTTCSC-------HHHHHHHHHHHHHHH
T ss_pred HHHcC-----CCHHHHHHHHHHHHHHHHcCCH-------HHHHH----HHHHHHcCCC-------hHHHHHHHHHHHHHH
Confidence 87753 2467888999999988887652 22232 2333333221 111123466667665
Q ss_pred hhcCCcc-cHHHHHHHHhHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhhhh-hhhhHHHH
Q 002148 645 RYVNHPE-AVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRF-MGITIGAI 703 (959)
Q Consensus 645 ~~~~~~~-~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~~~~~~~~-~~~~l~~l 703 (959)
...+ |+ ....++..++|.+...+. ..+.++++++..++..+.+..|.. +.++++.+
T Consensus 162 ~~~~-~~~~~~~~l~~l~p~l~~~l~--D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L 219 (242)
T 2qk2_A 162 TRTQ-PTALNKKLLKLLTTSLVKTLN--EPDPTVRDSSAEALGTLIKLMGDKAVTPLLADV 219 (242)
T ss_dssp TTCC-GGGCCHHHHHHHHHHHHHHHT--SSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTS
T ss_pred HHcC-CCCccHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhc
Confidence 5432 32 345667788888877773 346689999999999988888775 55666554
No 34
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.18 E-value=0.61 Score=54.49 Aligned_cols=229 Identities=9% Similarity=0.058 Sum_probs=126.3
Q ss_pred CCcchhhHHHHHHHHhhcccCCcc-ccchHHHhhhccCCCCcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhc
Q 002148 448 NEWRPAEAALFCIRAISTYVSVVE-AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSG 526 (959)
Q Consensus 448 ~~w~~~Ea~l~~l~~l~e~~~~~~-~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~ 526 (959)
++-..+-.|+.+++.++. ++- ...++.+...+.. .+|.||++++.++++... .+|+ .++.+++.+...
T Consensus 119 ~n~~vr~lAL~~L~~i~~---~~~~~~l~~~l~~~L~~--~~~~VRk~A~~al~~l~~---~~p~---~v~~~~~~l~~l 187 (618)
T 1w63_A 119 STQFVQGLALCTLGCMGS---SEMCRDLAGEVEKLLKT--SNSYLRKKAALCAVHVIR---KVPE---LMEMFLPATKNL 187 (618)
T ss_dssp SSSHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHS--CCHHHHHHHHHHHHHHHH---HCGG---GGGGGGGGTTTS
T ss_pred CCHhHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHH---HChH---HHHHHHHHHHHH
Confidence 344456677888887762 110 1223333333433 489999999999998875 4565 566666677777
Q ss_pred cCCCH-HHHHHHHHHHHHHHHHhh---hhhhCCHHHHHHHHHHHhhccCC--C----CCCHhhHHHHHHHHHHHHhcCCh
Q 002148 527 MSTSE-DTAAAAALAFRHICDDCR---KKLCGYLDGLYNVYRTAVNGEGS--L----KVSAEDSLHLVEALSMVITELPQ 596 (959)
Q Consensus 527 l~~~~-~v~~~A~~al~~lc~~c~---~~L~~~~~~ll~~~~~~~~~~~~--~----~l~~~~~~~l~eai~~vi~~~p~ 596 (959)
+.+++ .|+..|..+|..+|+... ..+.+.++.++..+.++...+.. . ..++--+..+++.++.+...-|.
T Consensus 188 L~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~ 267 (618)
T 1w63_A 188 LNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDD 267 (618)
T ss_dssp TTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHH
T ss_pred hCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHH
Confidence 77653 489999999999986433 34557788888888776542100 0 12466788888888877654322
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcccHH
Q 002148 597 VDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMR 676 (959)
Q Consensus 597 ~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~ 676 (959)
..+ .+.+-+.+++...... .........+++.+++. +.. .+ .....+.+.+..++.. .++.
T Consensus 268 --~~~-------~~~~~L~~l~~~~~~~----~~~~~aV~~ea~~~i~~-l~~-~~--~l~~~a~~~L~~~L~~--~d~~ 328 (618)
T 1w63_A 268 --SSE-------AMNDILAQVATNTETS----KNVGNAILYETVLTIMD-IKS-ES--GLRVLAINILGRFLLN--NDKN 328 (618)
T ss_dssp --HHH-------TTHHHHHHHHHTSCCS----STHHHHHHHHHHHHHHH-SCC-CH--HHHHHHHHHHHHHHTC--SSTT
T ss_pred --HHH-------HHHHHHHHHHhccccc----cchHHHHHHHHHHHHHh-cCC-CH--HHHHHHHHHHHHHHhC--CCCc
Confidence 111 1122222333221100 01112223455555444 222 22 1222334444444332 4556
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 002148 677 TMESLCRACKYAVRTSKRFMGITIGAILEE 706 (959)
Q Consensus 677 i~e~~~~~l~~~~~~~~~~~~~~l~~l~~~ 706 (959)
+...+...+..+...-+..+.++.+.++..
T Consensus 329 vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~ 358 (618)
T 1w63_A 329 IRYVALTSLLKTVQTDHNAVQRHRSTIVDC 358 (618)
T ss_dssp THHHHHHHHHHHHHHHHHHHGGGHHHHHHG
T ss_pred hHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence 777777777776665444455555554443
No 35
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=96.88 E-value=0.38 Score=53.61 Aligned_cols=315 Identities=11% Similarity=0.030 Sum_probs=160.7
Q ss_pred HHHHhcCC--CCchHHHHHHHHHHHHhhhccCCCCCCCCchhHHH--HHHHHHHhhHHHhhhcCCCHHHHHHHHHHHHHh
Q 002148 224 LTALSSLH--SEILSEASVNVISELIHYSAAGSSGGATVNMPLIQ--VIVPQIMSLKAHLTDSSKDEEDVKAIARLFADM 299 (959)
Q Consensus 224 ~~~~~~L~--~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~--~l~~~v~~l~~~l~~~~~d~e~~~~l~~l~~~~ 299 (959)
+.+++.|+ +++.+..|+.++..++.....+ .....+. .+++.++. .+ ....+.+.....+.++..+
T Consensus 23 ~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~------~~~~~~~~~~~i~~L~~---~L-~~~~~~~v~~~a~~~L~~l 92 (450)
T 2jdq_A 23 SDMIEMIFSKSPEQQLSATQKFRKLLSKEPNP------PIDEVISTPGVVARFVE---FL-KRKENCTLQFESAWVLTNI 92 (450)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSC------CHHHHHTSTTHHHHHHH---HH-TCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCC------cHHHHHHcCCcHHHHHH---HH-CCCCCHHHHHHHHHHHHHH
Confidence 33444443 4467899999999988643211 1111221 23333222 22 1222555555666677666
Q ss_pred hh---HHHHHHhcCCchHHHHHHHHHhhccCCCcchhhhhHHhHHHhHHHHhhcccccccCcccchHHHHHHHHhhhHHH
Q 002148 300 GD---SYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSA 376 (959)
Q Consensus 300 ~~---~~~~~l~~~~~~~~~~l~~ll~~~~~~~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (959)
+. .....+.+ ...++.++.+...++.++...++.....+...-. ..+.....
T Consensus 93 ~~~~~~~~~~~~~-----~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~------------------~~~~~~~~-- 147 (450)
T 2jdq_A 93 ASGNSLQTRIVIQ-----AGAVPIFIELLSSEFEDVQEQAVWALGNIAGDST------------------MCRDYVLD-- 147 (450)
T ss_dssp HSSCHHHHHHHHH-----TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH------------------HHHHHHHH--
T ss_pred hcCCHHHHHHHHh-----CCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCH------------------HHHHHHHH--
Confidence 54 22222221 1367778888888888888777766544432100 00000100
Q ss_pred HHHHHHHHHhhccCCCCCCCCChhhhHHHHHHHHHhhHHHHHhhhccCh---HHHHHHHHHHHHHhhhhcCCCCCCcchh
Q 002148 377 YESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYAVADVLIDAASVLGG---DATLKILYIKFVEGVACCGNKHNEWRPA 453 (959)
Q Consensus 377 ~~~Ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~d~l~~~~~il~~---~~~l~~l~~~l~~~~~~~~~~~~~w~~~ 453 (959)
..+++.++.-+.-++ + .+.|.....++..++.--++ ......+.+.+.+.+. +.+..-.
T Consensus 148 -~~~i~~L~~~l~~~~-----~-------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~-----~~~~~v~ 209 (450)
T 2jdq_A 148 -CNILPPLLQLFSKQN-----R-------LTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLF-----VSDTDVL 209 (450)
T ss_dssp -TTCHHHHHHHTTSCC-----C-------HHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTT-----CCCHHHH
T ss_pred -CCCHHHHHHHhcCCC-----C-------HHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHc-----cCCHHHH
Confidence 012222332222110 1 12455555666665532111 1111222333333321 3456778
Q ss_pred hHHHHHHHHhhcccCCc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhhhhHHhhCCCChhhH-HHHHHHHHhcc
Q 002148 454 EAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSIL-ASVLSILTSGM 527 (959)
Q Consensus 454 Ea~l~~l~~l~e~~~~~-----~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l-~~~l~~l~~~l 527 (959)
+.++++++.+++..++. ....++.++..+.. .++.++..++++++..+.--....+ ..+ ..+++.+...+
T Consensus 210 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~--~~~~~~~l~~L~~ll 285 (450)
T 2jdq_A 210 ADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMH--NDYKVVSPALRAVGNIVTGDDIQTQ--VILNCSALQSLLHLL 285 (450)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSCHHHHH--HHHTTTHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCC--CchhHHHHHHHHHHHHhhCChHHHH--HHHHCccHHHHHHHH
Confidence 88999999988754321 12456777776642 4688999999999988642111000 001 12444455555
Q ss_pred CCC-HHHHHHHHHHHHHHHHHhhhhhhCCH-HHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCChHHHH
Q 002148 528 STS-EDTAAAAALAFRHICDDCRKKLCGYL-DGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAK 600 (959)
Q Consensus 528 ~~~-~~v~~~A~~al~~lc~~c~~~L~~~~-~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~ 600 (959)
.++ ..++..|+.++.+++..+.......+ ..++..+.+++.. -+.+.|.....+++.+.....++...
T Consensus 286 ~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~ 355 (450)
T 2jdq_A 286 SSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQT-----AEFRTRKEAAWAITNATSGGSAEQIK 355 (450)
T ss_dssp TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHH-----SCHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhc-----CCHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 554 24999999999999864433222111 1233333333332 14678888999999988765444443
No 36
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=96.81 E-value=0.59 Score=53.52 Aligned_cols=329 Identities=13% Similarity=0.118 Sum_probs=172.5
Q ss_pred CCcchhhHHHHHHHHhhcccCCc------cccchHHHhhhccCCCCcHHHHHHHHHHHHhhhhHHhh------CCCChhh
Q 002148 448 NEWRPAEAALFCIRAISTYVSVV------EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDA------ASSDPSI 515 (959)
Q Consensus 448 ~~w~~~Ea~l~~l~~l~e~~~~~------~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~------~p~~~~~ 515 (959)
.++.....++.+++.+...-... ....++.+++.+.. +.++.++..++++++.++..-.. .+. .
T Consensus 99 ~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~-~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g---~ 174 (530)
T 1wa5_B 99 DDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRE-NQPEMLQLEAAWALTNIASGTSAQTKVVVDAD---A 174 (530)
T ss_dssp SSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTST-TSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCC-CCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCC---C
Confidence 45677777888888775432111 13456666666644 23789999999999988752111 111 4
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH---hhhhhh--CCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHH
Q 002148 516 LASVLSILTSGMSTSEDTAAAAALAFRHICDD---CRKKLC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMV 590 (959)
Q Consensus 516 l~~~l~~l~~~l~~~~~v~~~A~~al~~lc~~---c~~~L~--~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~v 590 (959)
++.++..+-. .++. ++..|+.+|.++|.+ ++..+. +.++.++.. +.. -+.+.+...+.+++.+
T Consensus 175 i~~Lv~lL~~--~~~~-vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~l----l~~-----~~~~v~~~a~~~L~~L 242 (530)
T 1wa5_B 175 VPLFIQLLYT--GSVE-VKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL----FNS-----NKPSLIRTATWTLSNL 242 (530)
T ss_dssp HHHHHHHHHH--CCHH-HHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHG----GGS-----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC--CCHH-HHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHH----hcc-----CCHHHHHHHHHHHHHH
Confidence 5666665543 2344 999999999999964 444333 345555544 332 2466788889999988
Q ss_pred HhcC-ChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCCcccHHHHHH-HHhHHHHHHH
Q 002148 591 ITEL-PQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQ-RLWPIFKAIF 668 (959)
Q Consensus 591 i~~~-p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~-~~~~~l~~il 668 (959)
...- |... ... ....+..+..++.... .......+..|+.+... .++....++. .+.|.+..++
T Consensus 243 ~~~~~~~~~-~~~----~~~~l~~L~~lL~~~d-------~~v~~~a~~~L~~L~~~--~~~~~~~~~~~~~v~~Lv~lL 308 (530)
T 1wa5_B 243 CRGKKPQPD-WSV----VSQALPTLAKLIYSMD-------TETLVDACWAISYLSDG--PQEAIQAVIDVRIPKRLVELL 308 (530)
T ss_dssp HCCSSSCCC-HHH----HGGGHHHHHHHTTCCC-------HHHHHHHHHHHHHHHSS--CHHHHHHHHHTTCHHHHHHGG
T ss_pred hCCCCCCCc-HHH----HHhHHHHHHHHHcCCC-------HHHHHHHHHHHHHHhCC--CHHHHHHHHhcCcHHHHHHHH
Confidence 8654 3211 112 2334444444444321 11122345555555432 1111222222 4455555544
Q ss_pred HhhcccHHHHHHHHHHHHHHHHHhhhhh-----hhhHHHHHHHHHHHHhhcCCcchhHhHHHHHHHhCCCccchHHHHHH
Q 002148 669 DIRAWDMRTMESLCRACKYAVRTSKRFM-----GITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNL 743 (959)
Q Consensus 669 ~~~~~~~~i~e~~~~~l~~~~~~~~~~~-----~~~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~~~~~~~~~~~l~~~ 743 (959)
. ..+..+.+.++.+++.+....+... ...+|.++.. +.. +......-+...+..+... ..+....+
T Consensus 309 ~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l----L~~-~~~~vr~~A~~aL~~l~~~--~~~~~~~~ 379 (530)
T 1wa5_B 309 S--HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLL----LSS-PKENIKKEACWTISNITAG--NTEQIQAV 379 (530)
T ss_dssp G--CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH----TTC-SCHHHHHHHHHHHHHHTTS--CHHHHHHH
T ss_pred C--CCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHH----HcC-CCHHHHHHHHHHHHHHHcC--CHHHHHHH
Confidence 3 2466788888888887654222111 1233444333 222 2233333333344444332 11222222
Q ss_pred HH-HHHHHHHHhhcCcccCCCCCCcHHHHHHHHHHHHhhC-C--C---cccCcCChHHHHHHHHHhccCCCchhHHHHHH
Q 002148 744 IE-ALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYC-P--Q---LFIPSSVFPSLVDCSMIGITVQHREASNSILT 816 (959)
Q Consensus 744 ~~-~l~~~~~~~l~~~~~~~~~pDl~~~~f~l~~~~~~~~-p--~---~~l~s~~l~~~~~~~~~~l~~~~~~~~~~~~~ 816 (959)
+. .++...+.++. ..+++++......+..+.... | . .+.....++.++.+ +...++.....++.
T Consensus 380 ~~~~~l~~L~~lL~-----~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~l----l~~~~~~v~~~al~ 450 (530)
T 1wa5_B 380 IDANLIPPLVKLLE-----VAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDL----LEIADNRIIEVTLD 450 (530)
T ss_dssp HHTTCHHHHHHHHH-----HSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHH----TTTCCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHh-----cCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHH----HhCCCHHHHHHHHH
Confidence 21 12333344443 245778888777777777653 2 1 11222334444443 55667777788888
Q ss_pred HHHHhhcC
Q 002148 817 FLSDIFDL 824 (959)
Q Consensus 817 fl~~li~~ 824 (959)
.+..++..
T Consensus 451 aL~~l~~~ 458 (530)
T 1wa5_B 451 ALENILKM 458 (530)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88888753
No 37
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=96.72 E-value=0.056 Score=62.22 Aligned_cols=337 Identities=9% Similarity=0.074 Sum_probs=173.9
Q ss_pred CcchhhHHHHHHHHhhcccCCc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhhhhH-------HhhCCCChhhH
Q 002148 449 EWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKW-------FDAASSDPSIL 516 (959)
Q Consensus 449 ~w~~~Ea~l~~l~~l~e~~~~~-----~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~-------l~~~p~~~~~l 516 (959)
++.-.+.++++++.++..-+.. ....++.++..+.. .++.++..++++++.++.. +... . .+
T Consensus 144 ~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~--~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~-~---~l 217 (530)
T 1wa5_B 144 PEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT--GSVEVKEQAIWALGNVAGDSTDYRDYVLQC-N---AM 217 (530)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH--CCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-T---CH
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhCCCccchHHHHHc-C---cH
Confidence 6788889999999998754322 13456677766653 3789999999999998742 1111 1 45
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhh-hCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCC
Q 002148 517 ASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKL-CGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELP 595 (959)
Q Consensus 517 ~~~l~~l~~~l~~~~~v~~~A~~al~~lc~~c~~~L-~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p 595 (959)
+.++..+.. .++. ++..|+.+|..+|....... ......++..+..++.. -+.+.+...+.+++.+...-+
T Consensus 218 ~~L~~ll~~--~~~~-v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~-----~d~~v~~~a~~~L~~L~~~~~ 289 (530)
T 1wa5_B 218 EPILGLFNS--NKPS-LIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYS-----MDTETLVDACWAISYLSDGPQ 289 (530)
T ss_dssp HHHHHGGGS--CCHH-HHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTC-----CCHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHhcc--CCHH-HHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcC-----CCHHHHHHHHHHHHHHhCCCH
Confidence 555544433 2334 99999999999996431110 11122334444445543 246778888888888876532
Q ss_pred hHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCCcccHHHHH-HHHhHHHHHHHHhhccc
Q 002148 596 QVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAI-QRLWPIFKAIFDIRAWD 674 (959)
Q Consensus 596 ~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~il~~~~~~ 674 (959)
+.....+. ..++..+-.++.... .......+..|+.+..+. +.....++ ..+.|.+..++.. .+
T Consensus 290 -~~~~~~~~---~~~v~~Lv~lL~~~~-------~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~l~~L~~lL~~--~~ 354 (530)
T 1wa5_B 290 -EAIQAVID---VRIPKRLVELLSHES-------TLVQTPALRAVGNIVTGN--DLQTQVVINAGVLPALRLLLSS--PK 354 (530)
T ss_dssp -HHHHHHHH---TTCHHHHHHGGGCSC-------HHHHHHHHHHHHHHTTSC--HHHHHHHHHTTHHHHHHHHTTC--SC
T ss_pred -HHHHHHHh---cCcHHHHHHHHCCCC-------hhhHHHHHHHHHHHHcCC--HHHHHHHHHcchHHHHHHHHcC--CC
Confidence 22222222 234444445554221 111223456666665421 11111111 2455555555543 35
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh-----hhhHHHHHHHHHHHHhhcCCcchhHhHHHHHHHhCCCccchHHHHHHHH-HHH
Q 002148 675 MRTMESLCRACKYAVRTSKRFM-----GITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIE-ALF 748 (959)
Q Consensus 675 ~~i~e~~~~~l~~~~~~~~~~~-----~~~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~~~~~~~~~~~l~~~~~-~l~ 748 (959)
..+.+.++.++..+........ ...+|.++..+... ...-....++.++.+....+..++. ...++. .++
T Consensus 355 ~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~---~~~l~~~~~l 430 (530)
T 1wa5_B 355 ENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDI---IRYLVSQGCI 430 (530)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHH---HHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCcHHH---HHHHHHCCCH
Confidence 6888889988887654221211 23456666654321 0000113355556555542221111 112211 123
Q ss_pred HHHHHhhcCcccCCCCCCcHHHHHHHHHHHHhhCCCccc-----CcCChHHH-----HHHHHHhccCCCchhHHHHHHHH
Q 002148 749 KRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYCPQLFI-----PSSVFPSL-----VDCSMIGITVQHREASNSILTFL 818 (959)
Q Consensus 749 ~~~~~~l~~~~~~~~~pDl~~~~f~l~~~~~~~~p~~~l-----~s~~l~~~-----~~~~~~~l~~~~~~~~~~~~~fl 818 (959)
.....++. ..+|+++......+..++...+.... ..+....+ ++....-...++.+....+...+
T Consensus 431 ~~L~~ll~-----~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il 505 (530)
T 1wa5_B 431 KPLCDLLE-----IADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 505 (530)
T ss_dssp HHHHHHTT-----TCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHH
T ss_pred HHHHHHHh-----CCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 33334443 34678888888888888876543110 01111111 12222222345566667777777
Q ss_pred HHhhc
Q 002148 819 SDIFD 823 (959)
Q Consensus 819 ~~li~ 823 (959)
..++.
T Consensus 506 ~~~~~ 510 (530)
T 1wa5_B 506 ETYFG 510 (530)
T ss_dssp HHHSS
T ss_pred HHHCC
Confidence 77774
No 38
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=96.72 E-value=0.066 Score=66.07 Aligned_cols=319 Identities=12% Similarity=0.143 Sum_probs=165.2
Q ss_pred cHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccCCC--H--H--HHHHHHHHHHHHHHHhhhhhhCCHHHHHH
Q 002148 488 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS--E--D--TAAAAALAFRHICDDCRKKLCGYLDGLYN 561 (959)
Q Consensus 488 ~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~--~--~--v~~~A~~al~~lc~~c~~~L~~~~~~ll~ 561 (959)
+-..+.+.|+.+|..+.-+....+ .++++.++++++.-..++ + + ++...++.+.+.++=.+.+ ..+++..++
T Consensus 492 sW~~lea~~~aigaIag~~~~~~E-~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h-~~~L~~vl~ 569 (1073)
T 3gjx_A 492 SWKNLNTLCWAIGSISGAMHEEDE-KRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAH-WKFLKTVVN 569 (1073)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHH-HHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHHHHHHH
T ss_pred CHHHHhHHHHHHHHHHCcCCcccc-cchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhC-HHHHHHHHH
Confidence 678899999999999764332101 148999999998654433 1 1 2222334454444432222 134555555
Q ss_pred HHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCChHHHH---HHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHH
Q 002148 562 VYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAK---KALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHID 638 (959)
Q Consensus 562 ~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~---~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 638 (959)
.+...+.. -....+.....++..+.+.-+..-.. .....++.+++..+.++..... .+......+
T Consensus 570 ~L~~~m~~-----~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~-------~~~~~~lye 637 (1073)
T 3gjx_A 570 KLFEFMHE-----THDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQ-------PQQVHTFYE 637 (1073)
T ss_dssp HHHHHTTC-----CSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCC-------HHHHHHHHH
T ss_pred HHHHHHhc-----CCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcC-------HHHHHHHHH
Confidence 55554431 12345666666666666542210000 0001134444445555544321 234445678
Q ss_pred HHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhh----------cccHHHHHHHHHHHH---HHHHHhhhhhhhhHHHHHH
Q 002148 639 RFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIR----------AWDMRTMESLCRACK---YAVRTSKRFMGITIGAILE 705 (959)
Q Consensus 639 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~----------~~~~~i~e~~~~~l~---~~~~~~~~~~~~~l~~l~~ 705 (959)
.+|.++.....+..-..+++.+++....-.... ..|++.+..+..+++ .+..++|..+.|.+.++..
T Consensus 638 av~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~~f~~~~~~i~~ 717 (1073)
T 3gjx_A 638 AVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYL 717 (1073)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcchhHHHHHHHHHH
Confidence 899998877643323455565555443322221 124443444444444 4455678777777777766
Q ss_pred HHHHHHhhc----------------CCc--chhHhHH----HHHHH-hCCCccchHHHHHHHHHHHHHHHHhhcCcccCC
Q 002148 706 EIQGLYQQH----------------QQP--CFLYLSS----EVIKI-FGSDPSCASYLHNLIEALFKRTTCLLTSIEEFT 762 (959)
Q Consensus 706 ~l~~~~~~~----------------~~~--~~L~l~~----~li~~-~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~ 762 (959)
-+...|+.. +.+ ..+..+. .++.. .++.++......+++.+++..++.-.. +
T Consensus 718 ~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~-----~ 792 (1073)
T 3gjx_A 718 DMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQ-----R 792 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHH-----H
T ss_pred HHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHh-----c
Confidence 655555421 111 1122222 12222 233333333344444555555443332 2
Q ss_pred CCCCcHH-HHHHHHHHHHhhCCCcccC--cCChHHHHHHHHHhcc---CCCchhHHHHHHHHHHhhcCc
Q 002148 763 SRPDVAD-DCFLLASRCIRYCPQLFIP--SSVFPSLVDCSMIGIT---VQHREASNSILTFLSDIFDLA 825 (959)
Q Consensus 763 ~~pDl~~-~~f~l~~~~~~~~p~~~l~--s~~l~~~~~~~~~~l~---~~~~~~~~~~~~fl~~li~~~ 825 (959)
..|+.++ +++++++.++++....+.+ ...++.++++.+.-++ ..+|+....-++++..+...|
T Consensus 793 ~~p~~r~~evL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~ 861 (1073)
T 3gjx_A 793 NVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHC 861 (1073)
T ss_dssp SCGGGCCTHHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHC
T ss_pred CCcccccHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHH
Confidence 3455433 4677788888765553332 2357777777766554 467777777788888877654
No 39
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=96.69 E-value=0.16 Score=62.74 Aligned_cols=86 Identities=9% Similarity=0.134 Sum_probs=70.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 002148 528 STSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLC 607 (959)
Q Consensus 528 ~~~~~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll 607 (959)
.....++.+++.+|+++....+..+.|+++.++..+... ++..+....+.-+|.++.....+ ..+.+..++
T Consensus 712 ~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~--------~~~~e~~~fL~l~~qli~~f~~~-~~~~l~~ll 782 (980)
T 3ibv_A 712 GFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNS--------IDMNELVDVLSFISQLIHIYKDN-MMEITNRML 782 (980)
T ss_dssp CCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHH--------CCTTTHHHHHHHHHHHHHHTTTT-SHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 333349999999999999999999999999999988743 33455677788888899888766 778999999
Q ss_pred hhhHHHHHHHHhcCC
Q 002148 608 LPVVTPLQEIINQGP 622 (959)
Q Consensus 608 ~p~~~~l~~~~~~~~ 622 (959)
.|+++++-+++++..
T Consensus 783 ~~l~~~if~~l~~~~ 797 (980)
T 3ibv_A 783 PTLLMRIFSSLSAAP 797 (980)
T ss_dssp HHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHhcCCC
Confidence 999999999988754
No 40
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=96.60 E-value=0.27 Score=56.41 Aligned_cols=334 Identities=14% Similarity=0.134 Sum_probs=175.8
Q ss_pred CCcchhhHHHHHHHHhhcccC-Cc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhhhhHHhhCCCChhhH-HHHH
Q 002148 448 NEWRPAEAALFCIRAISTYVS-VV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSIL-ASVL 520 (959)
Q Consensus 448 ~~w~~~Ea~l~~l~~l~e~~~-~~-----~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l-~~~l 520 (959)
.++.....++.+++.+...-. +. ....++.+++++.. ++++.++..++++++.++..-..+.. .++ ..++
T Consensus 86 ~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~-~~~~~v~~~A~~~L~~l~~~~~~~~~--~~~~~g~i 162 (528)
T 4b8j_A 86 DDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTR-EDFPQLQFEAAWALTNIASGTSENTK--VVIDHGAV 162 (528)
T ss_dssp SCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTC-TTCHHHHHHHHHHHHHHHTSCHHHHH--HHHHTTHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCC-CCCHHHHHHHHHHHHHHhCCCHHHHH--HHHhCCcH
Confidence 457777788888887755433 11 13567777777654 33489999999999998763111100 011 1244
Q ss_pred HHHHhccCCC-HHHHHHHHHHHHHHHHH---hhhhhh--CCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcC
Q 002148 521 SILTSGMSTS-EDTAAAAALAFRHICDD---CRKKLC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITEL 594 (959)
Q Consensus 521 ~~l~~~l~~~-~~v~~~A~~al~~lc~~---c~~~L~--~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~ 594 (959)
+.++..+.++ ..++..|+.+|.++|.+ ++..+. ..++.++.. +.. .-+...+..+..+++.+...-
T Consensus 163 ~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~l----L~~----~~~~~v~~~a~~~L~~L~~~~ 234 (528)
T 4b8j_A 163 PIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQ----LNE----HTKLSMLRNATWTLSNFCRGK 234 (528)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHT----CCT----TCCHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHH----Hhc----CCCHHHHHHHHHHHHHHHcCC
Confidence 4555555543 24999999999999964 344433 345555443 321 135677888889999888765
Q ss_pred ChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCCcccHH-HHH-HHHhHHHHHHHHhhc
Q 002148 595 PQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVA-DAI-QRLWPIFKAIFDIRA 672 (959)
Q Consensus 595 p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-~~~-~~~~~~l~~il~~~~ 672 (959)
|.... . ...+.+..+..++.... .......+..|+.+..+ ++... .++ ..+.|.+..++..
T Consensus 235 ~~~~~-~----~~~~~l~~L~~lL~~~~-------~~v~~~a~~aL~~l~~~---~~~~~~~~~~~g~v~~Lv~lL~~-- 297 (528)
T 4b8j_A 235 PQPSF-E----QTRPALPALARLIHSND-------EEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLLH-- 297 (528)
T ss_dssp SCCCH-H----HHTTHHHHHHHHTTCCC-------HHHHHHHHHHHHHHTSS---CHHHHHHHHHTTCHHHHHHHTTC--
T ss_pred CCCcH-H----HHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHHcC---CHHHHHHHHHcCHHHHHHHHHcC--
Confidence 43221 1 12444444445554321 11222345556655432 22211 111 1345555555432
Q ss_pred ccHHHHHHHHHHHHHHHHHhhhhh-----hhhHHHHHHHHHHHHhhcCCcchhHhHHHHHHHhCCCccchHHHHHHHH-H
Q 002148 673 WDMRTMESLCRACKYAVRTSKRFM-----GITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIE-A 746 (959)
Q Consensus 673 ~~~~i~e~~~~~l~~~~~~~~~~~-----~~~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~~~~~~~~~~~l~~~~~-~ 746 (959)
.++.+.+.++.+++.+........ ...+|.++..+ .....+....-+...+..+... ..+....++. .
T Consensus 298 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL----~~~~~~~v~~~A~~~L~nl~~~--~~~~~~~~~~~~ 371 (528)
T 4b8j_A 298 PSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLL----TQNLKKSIKKEACWTISNITAG--NKDQIQAVINAG 371 (528)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHH----HSCCCHHHHHHHHHHHHHHHTS--CHHHHHHHHHTT
T ss_pred CChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHH----cCCCcHHHHHHHHHHHHHHHCC--CHHHHHHHHHCC
Confidence 356788888888887654322211 12344444443 2221222222222333332221 1122222222 1
Q ss_pred HHHHHHHhhcCcccCCCCCCcHHHHHHHHHHHHhh-CCCc---ccCcCChHHHHHHHHHhccCCCchhHHHHHHHHHHhh
Q 002148 747 LFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRY-CPQL---FIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIF 822 (959)
Q Consensus 747 l~~~~~~~l~~~~~~~~~pDl~~~~f~l~~~~~~~-~p~~---~l~s~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~li 822 (959)
++...+.++. ..+++++..-...+..+... .|.. +.....++.++ ..+...+......++..+..++
T Consensus 372 ~i~~L~~lL~-----~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~----~lL~~~d~~v~~~al~~L~~l~ 442 (528)
T 4b8j_A 372 IIGPLVNLLQ-----TAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLC----DLLICPDIRIVTVCLEGLENIL 442 (528)
T ss_dssp CHHHHHHHHH-----HSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHH----HGGGCSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHh-----cCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHH----HHHcCCCHHHHHHHHHHHHHHH
Confidence 3333444444 23677888877777777765 2321 11223334333 3466678888888999998888
Q ss_pred cC
Q 002148 823 DL 824 (959)
Q Consensus 823 ~~ 824 (959)
..
T Consensus 443 ~~ 444 (528)
T 4b8j_A 443 KV 444 (528)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 41
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=96.58 E-value=0.67 Score=54.09 Aligned_cols=135 Identities=10% Similarity=0.062 Sum_probs=86.0
Q ss_pred CCcchhhHHHHHHHHhhcccCCc-cccchHHHhhhccCCCCcHHHHHHHHHHHHhhhhHHhhCCCChhhHH--HHHHHHH
Q 002148 448 NEWRPAEAALFCIRAISTYVSVV-EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILA--SVLSILT 524 (959)
Q Consensus 448 ~~w~~~Ea~l~~l~~l~e~~~~~-~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~--~~l~~l~ 524 (959)
++-..+-.||.+++.+.. ++ -...++.+.+.+.+-..+|.||++++.++.++.+ .+|+ .++ ..++.+.
T Consensus 123 ~n~~ir~lALr~L~~i~~---~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~---~~p~---~~~~~~~~~~l~ 193 (621)
T 2vgl_A 123 RNPTFMGLALHCIANVGS---REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYR---TSPD---LVPMGDWTSRVV 193 (621)
T ss_dssp CCHHHHHHHHHHHHHHCC---HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHH---HCGG---GCCCCSCHHHHH
T ss_pred CCHHHHHHHHHHhhccCC---HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH---hChh---hcCchhHHHHHH
Confidence 344445677888887753 11 1123344444442223489999999999988775 3454 333 4445555
Q ss_pred hccCCCH-HHHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHhhccCC--CC------CCHhhHHHHHHHHHHHH
Q 002148 525 SGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGS--LK------VSAEDSLHLVEALSMVI 591 (959)
Q Consensus 525 ~~l~~~~-~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~~~~~~~--~~------l~~~~~~~l~eai~~vi 591 (959)
..+.+++ .|..+|..++..+|......+.++++.+++.+.+++..+.. .. -++--|..+++.++.+.
T Consensus 194 ~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~ 269 (621)
T 2vgl_A 194 HLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYP 269 (621)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSS
T ss_pred HHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhC
Confidence 5555543 49999999999999987777778888888888887653210 00 03567788888777554
No 42
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=96.58 E-value=0.65 Score=51.67 Aligned_cols=334 Identities=15% Similarity=0.136 Sum_probs=173.6
Q ss_pred hHhHHHHHHHHHHHHhccCCCCCcccccc-hhHHHHHhcCCCC---chHHHHHHHHHHHHhhhccCCCCCCCCchhHHH-
Q 002148 192 NELKEQVLEAFASWLRLKHRIPGSVLASH-PLVLTALSSLHSE---ILSEASVNVISELIHYSAAGSSGGATVNMPLIQ- 266 (959)
Q Consensus 192 ~~~~~~~l~~~~sWi~~~~~~~~~~~~~~-~ll~~~~~~L~~~---~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~- 266 (959)
++++..++.++..-+.....-+...+... ..++.+.+.|.++ +++..|+.++..+...... ....++.
T Consensus 34 ~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~-------~~~~~~~~ 106 (450)
T 2jdq_A 34 PEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSL-------QTRIVIQA 106 (450)
T ss_dssp HHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHH-------HHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHH-------HHHHHHhC
Confidence 35778888888776542111111122233 6888888887654 5788999999988863210 0011111
Q ss_pred HHHHHHHhhHHHhhhcCCCHHHHHHHHHHHHHhhhHH---HHHHhcCCchHHHHHHHHHhhccC-CCcchhhhhHHhHHH
Q 002148 267 VIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSY---VELIATGSDESMLIVHALLEVASH-PEYDIASMTFNFWHS 342 (959)
Q Consensus 267 ~l~~~v~~l~~~l~~~~~d~e~~~~l~~l~~~~~~~~---~~~l~~~~~~~~~~l~~ll~~~~~-~~~~v~~~~l~fW~~ 342 (959)
..++.++ ..+. +.+.+.....+..+..++... ...+.+. ..++.++.+... ++.++...+...+..
T Consensus 107 ~~i~~L~---~lL~--~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~-----~~i~~L~~~l~~~~~~~v~~~a~~~L~~ 176 (450)
T 2jdq_A 107 GAVPIFI---ELLS--SEFEDVQEQAVWALGNIAGDSTMCRDYVLDC-----NILPPLLQLFSKQNRLTMTRNAVWALSN 176 (450)
T ss_dssp THHHHHH---HHTT--CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-----TCHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred CCHHHHH---HHHc--CCCHHHHHHHHHHHHHHccCCHHHHHHHHHC-----CCHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 1222222 2221 335555555556666655431 2222211 246666666664 567777777766555
Q ss_pred hHHHHhhcccccccCcccchHHHHHHHHhhhHHHHHHHHHHHHhhccCCCCCCCCChhhhHHHHHHHHHhhHHHHHhhhc
Q 002148 343 LQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYAVADVLIDAASV 422 (959)
Q Consensus 343 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~d~l~~~~~i 422 (959)
+.... ++.. ......+. ++.++.-+. .+ +. +.|..+..++.+++..
T Consensus 177 l~~~~---------~~~~--------~~~~~~~~----l~~L~~~l~-~~-----~~-------~v~~~a~~~L~~l~~~ 222 (450)
T 2jdq_A 177 LCRGK---------SPPP--------EFAKVSPC----LNVLSWLLF-VS-----DT-------DVLADACWALSYLSDG 222 (450)
T ss_dssp HHCCS---------SSCC--------CGGGTGGG----HHHHHHHTT-CC-----CH-------HHHHHHHHHHHHHTSS
T ss_pred HhCCC---------CCCC--------CHHHHHHH----HHHHHHHHc-cC-----CH-------HHHHHHHHHHHHHHCC
Confidence 54211 0100 00111222 222222221 11 11 2355555566655532
Q ss_pred cChHHHHHH-----HHHHHHHhhhhcCCCCCCcchhhHHHHHHHHhhcccCCc-----cccchHHHhhhccCCCCcHHHH
Q 002148 423 LGGDATLKI-----LYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLL 492 (959)
Q Consensus 423 l~~~~~l~~-----l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~l~e~~~~~-----~~~~l~~l~~~l~~lp~~~~v~ 492 (959)
.. + .... +.+.+.+.+ . +.+|.-.+.++.+++.++.+.+.. +...++.+++.+.. .++.+|
T Consensus 223 ~~-~-~~~~~~~~~~i~~L~~ll----~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~vr 293 (450)
T 2jdq_A 223 PN-D-KIQAVIDAGVCRRLVELL----M-HNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSS--PKESIK 293 (450)
T ss_dssp SH-H-HHHHHHHTTTHHHHHHHT----T-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTC--SSHHHH
T ss_pred Cc-H-HHHHHHHcCcHHHHHHHH----C-CCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcC--CCHHHH
Confidence 11 1 1111 223333332 2 467888999999999998764321 12355666666544 378999
Q ss_pred HHHHHHHHhhhhHHhhCCCC---hhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhh-hhhhCCH-HHHHHHHHHHh
Q 002148 493 QTVCLTIGAYSKWFDAASSD---PSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCR-KKLCGYL-DGLYNVYRTAV 567 (959)
Q Consensus 493 ~t~~~~ig~y~~~l~~~p~~---~~~l~~~l~~l~~~l~~~~~v~~~A~~al~~lc~~c~-~~L~~~~-~~ll~~~~~~~ 567 (959)
..+++++|.++..-..+-+. ...++.++..+.. .++. ++..|+.++.+++.... ......+ ..++..+.+++
T Consensus 294 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~--~~~~-v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll 370 (450)
T 2jdq_A 294 KEACWTISNITAGNRAQIQTVIDANIFPALISILQT--AEFR-TRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLL 370 (450)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHH--SCHH-HHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGG
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhc--CCHH-HHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHh
Confidence 99999999987421110000 0145555555543 2334 99999999999997632 2221111 12444555555
Q ss_pred hccCCCCCCHhhHHHHHHHHHHHHhc
Q 002148 568 NGEGSLKVSAEDSLHLVEALSMVITE 593 (959)
Q Consensus 568 ~~~~~~~l~~~~~~~l~eai~~vi~~ 593 (959)
.. -+.+.+...+++++.++..
T Consensus 371 ~~-----~~~~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 371 TV-----MDSKIVQVALNGLENILRL 391 (450)
T ss_dssp GS-----SCHHHHHHHHHHHHHHHHH
T ss_pred cC-----CCHHHHHHHHHHHHHHHHh
Confidence 43 2466778888888877754
No 43
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=96.36 E-value=2.3 Score=49.51 Aligned_cols=129 Identities=9% Similarity=0.092 Sum_probs=71.1
Q ss_pred cCCCHHHHHHHHHHHHHHhc-ChhhHHHHHHHhccC--CCChhHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHHHHHHH
Q 002148 16 HHPDDAVRMQADRWLQDFQH-TIDAWQVADNLLHDA--TSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLK 92 (959)
Q Consensus 16 ~~~d~~~r~~A~~~L~~~q~-s~~aw~~~~~lL~~~--~~~~~~~~faa~~L~~ki~~~w~~l~~~~~~~lr~~Ll~~l~ 92 (959)
.++|.+.|+-+--++..+-+ .++--.++..-+.++ +.++.+|-.|..++-+-. .++-.+.+-..+...+.
T Consensus 84 ~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~-------~~e~~~~l~~~v~~~l~ 156 (621)
T 2vgl_A 84 SSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVG-------SREMAEAFAGEIPKILV 156 (621)
T ss_dssp GCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHC-------CHHHHHHHTTHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccC-------CHHHHHHHHHHHHHHHh
Confidence 45677777777777776554 355444444433321 345666666666665431 13333333333333331
Q ss_pred HhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCC-CchhhHHHHhccccc
Q 002148 93 KFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHP-EFVPGFLELLTVLPE 153 (959)
Q Consensus 93 ~~~~~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~l~~~~-~~~~~~L~~L~~l~E 153 (959)
+ ...+++||++-+.++..++...+ +.-+..++++.+...+.... ......+.++..+.+
T Consensus 157 ~-~d~~~~VRK~A~~al~kl~~~~p-~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~ 216 (621)
T 2vgl_A 157 A-GDTMDSVKQSAALCLLRLYRTSP-DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQ 216 (621)
T ss_dssp C-SSSCHHHHHHHHHHHHHHHHHCG-GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred C-CCCCHHHHHHHHHHHHHHHHhCh-hhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHH
Confidence 1 23578999999999999987543 44441126777777775432 223344555555443
No 44
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=95.43 E-value=4.8 Score=45.78 Aligned_cols=397 Identities=12% Similarity=0.119 Sum_probs=188.9
Q ss_pred hHHHHHhcCCC--CchHHHHHHHHHHHHhhhccCCCCCCCCchhHHH-HHHHHHHhhHHHhhhcCCCHHHHHHHHHHHHH
Q 002148 222 LVLTALSSLHS--EILSEASVNVISELIHYSAAGSSGGATVNMPLIQ-VIVPQIMSLKAHLTDSSKDEEDVKAIARLFAD 298 (959)
Q Consensus 222 ll~~~~~~L~~--~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~-~l~~~v~~l~~~l~~~~~d~e~~~~l~~l~~~ 298 (959)
.++-+.+.+.+ ++....|+..+..+++....+ ....+++ .++|.++.+ + ....+.+.....+.++..
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~------~i~~ii~~G~ip~Lv~l---L-~~~~~~~~q~~Aa~aL~n 146 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQP------PIDNIIRAGLIPKFVSF---L-GKTDCSPIQFESAWALTN 146 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCC------CHHHHHHTTHHHHHHHH---H-TCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCc------hHHHHHHCCCHHHHHHH---H-cCCCCHHHHHHHHHHHHH
Confidence 34455555543 456778888888888654321 1112222 133433322 2 223344444445556655
Q ss_pred hhh---HHHHHHhcCCchHHHHHHHHHhhccCCCcchhhhhHHhHHHhHHHHhhcccccccCcccchHHHHHHHHhhhHH
Q 002148 299 MGD---SYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRS 375 (959)
Q Consensus 299 ~~~---~~~~~l~~~~~~~~~~l~~ll~~~~~~~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (959)
++. .....+.+. ..++.++.+...++.++.+.++.-...+..+ ++ ..+.....
T Consensus 147 ia~~~~~~~~~vv~~-----Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~----------~~--------~~r~~i~~- 202 (529)
T 3tpo_A 147 IASGTSEQTKAVVDG-----GAIPAFISLLASPHAHISEQAVWALGNIAGA----------GS--------AFRDLVIK- 202 (529)
T ss_dssp HHTSCHHHHHHHHHT-----THHHHHHHHTTCSCHHHHHHHHHHHHHHHTT----------CH--------HHHHHHHH-
T ss_pred HHcCCHHHHHHHHHC-----CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcc----------CH--------HHHHHHHH-
Confidence 543 122233322 2577788888889988888777654444311 00 00000000
Q ss_pred HHHHHHHHHHhhccCCCCCCCCChhhhHHHHHHHHHhhHHHHHhhhccC---hHHHHHHHHHHHHHhhhhcCCCCCCcch
Q 002148 376 AYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYAVADVLIDAASVLG---GDATLKILYIKFVEGVACCGNKHNEWRP 452 (959)
Q Consensus 376 ~~~~Ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~d~l~~~~~il~---~~~~l~~l~~~l~~~~~~~~~~~~~w~~ 452 (959)
.-.+..++.-+..+.. +... ....+.+..++..++.--. .-.....+.+.|...+. +.+-.-
T Consensus 203 --~g~i~~Ll~lL~~~~~-~~~~-------~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~-----~~~~~v 267 (529)
T 3tpo_A 203 --HGAIDPLLALLAVPDL-STLA-------CGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH-----HNDPEV 267 (529)
T ss_dssp --TTCHHHHHHTTCSSCG-GGSC-------HHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTT-----SSCHHH
T ss_pred --cCCcHHHHHHHhccch-hHhH-------HHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhc-----CCcHHH
Confidence 0112233333333321 1100 1122233334444432111 11122334444554432 234455
Q ss_pred hhHHHHHHHHhhcccCCc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhhhhHHhhCCCChhhH-HHHHHHHHhc
Q 002148 453 AEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSIL-ASVLSILTSG 526 (959)
Q Consensus 453 ~Ea~l~~l~~l~e~~~~~-----~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l-~~~l~~l~~~ 526 (959)
.+.++++++.+++.-... ....++.++.++.. .++.++..++.++|..+..-..... ..+ ..++..+...
T Consensus 268 ~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~--~~~~v~~~a~~aL~nl~~~~~~~~~--~i~~~g~l~~L~~L 343 (529)
T 3tpo_A 268 LADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA--TELPIVTPALRAIGNIVTGTDEQTQ--KVIDAGALAVFPSL 343 (529)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTC--SCHHHHHHHHHHHHHHTTSCHHHHH--HHHHTTGGGGHHHH
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcC--CChhHHHHHHHHHHHHHccchHHHH--HHhhcccHHHHHHH
Confidence 677888888888654321 23456677766643 3678899999999887531100000 000 1122233334
Q ss_pred cCCCH-HHHHHHHHHHHHHHHHhhhhhhCCH-HHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHH
Q 002148 527 MSTSE-DTAAAAALAFRHICDDCRKKLCGYL-DGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALE 604 (959)
Q Consensus 527 l~~~~-~v~~~A~~al~~lc~~c~~~L~~~~-~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~ 604 (959)
+.+++ .++..|+.++.++|.....+..... ..++..+..++.. -+.+.+.....+++.++..-..+......+
T Consensus 344 L~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~-----~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~ 418 (529)
T 3tpo_A 344 LTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK-----ADFKTQKAAAWAITNYTSGGTVEQIVYLVH 418 (529)
T ss_dssp TTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHS-----SCHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcC-----CCHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 44442 4899999999999864332211111 1233334444443 246788888889998887655444332222
Q ss_pred -HhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcC---CcccHHHHHHHH--hHHHHHHHHhhcccHHHH
Q 002148 605 -MLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVN---HPEAVADAIQRL--WPIFKAIFDIRAWDMRTM 678 (959)
Q Consensus 605 -~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~---~~~~~~~~~~~~--~~~l~~il~~~~~~~~i~ 678 (959)
..+.|++ .++...+ .+-+...++.|..+++... ..+.+...+++. +..++.+. ...+.+|.
T Consensus 419 ~g~i~~L~----~LL~~~d-------~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq--~~~n~~i~ 485 (529)
T 3tpo_A 419 CGIIEPLM----NLLSAKD-------TKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQ--RHENESVY 485 (529)
T ss_dssp TTCHHHHH----HGGGCSC-------HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGG--GCSSHHHH
T ss_pred CcCHHHHH----HHhcCCC-------HHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHH--cCCCHHHH
Confidence 2233433 3443221 1223344566666655332 223333333332 22232221 23566888
Q ss_pred HHHHHHHHHHH
Q 002148 679 ESLCRACKYAV 689 (959)
Q Consensus 679 e~~~~~l~~~~ 689 (959)
+.+..++.+-+
T Consensus 486 ~~A~~iie~yf 496 (529)
T 3tpo_A 486 KASLNLIEKYF 496 (529)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHC
Confidence 88877776544
No 45
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=95.42 E-value=8 Score=48.23 Aligned_cols=316 Identities=10% Similarity=0.095 Sum_probs=165.8
Q ss_pred CcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccC-----CCHH-HHHHHHHHHHHHHHHhhhhhhCCHHHHH
Q 002148 487 QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMS-----TSED-TAAAAALAFRHICDDCRKKLCGYLDGLY 560 (959)
Q Consensus 487 ~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~-----~~~~-v~~~A~~al~~lc~~c~~~L~~~~~~ll 560 (959)
.+.+.+.++++.+|+.++-+....+ ..+++.+++++..... ++.. ++..++.++.++++-.+.+ ..+++.++
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e-~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~-~~~l~~vl 542 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTE-KRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLRTVI 542 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHH-HHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhh-HHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhH-HHHHHHHH
Confidence 3678899999999988764322100 1267888888765221 1222 4446888888888765543 23556666
Q ss_pred HHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHH--------HhhhhhHHHHHHHHhcCCCcccccCchh
Q 002148 561 NVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALE--------MLCLPVVTPLQEIINQGPEILQKKHPRD 632 (959)
Q Consensus 561 ~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~--------~ll~p~~~~l~~~~~~~~~~~~~~~~~~ 632 (959)
+.+...+.. -....+.....++..++...+ ..+. .++.++++.+..++.... ...
T Consensus 543 ~~ll~~l~~-----~~~~V~~~A~~al~~l~~~~~-----~~l~~~~~~~~~p~~~~il~~l~~~~~~~~-------~~~ 605 (1049)
T 3m1i_C 543 LKLFEFMHE-----THEGVQDMACDTFIKIVQKCK-----YHFVIQQPRESEPFIQTIIRDIQKTTADLQ-------PQQ 605 (1049)
T ss_dssp HHHHHHTTS-----SCHHHHHHHHHHHHHHHHHHT-----HHHHSCCTTCSSCHHHHHHHTHHHHHTTSC-------HHH
T ss_pred HHHHHHhcC-----CCHHHHHHHHHHHHHHHHHHH-----HHhhcccCCCCCcHHHHHHHHHHHHHHhCC-------HHH
Confidence 655554432 235677777888887776532 2221 445666666666665421 122
Q ss_pred hhHHHHHHHHHhhhcCCcccHHHHHHHHhHHHHH----HHHhhc------ccHHHH---HHHHHHHHHHHHHhhhhhhhh
Q 002148 633 LTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKA----IFDIRA------WDMRTM---ESLCRACKYAVRTSKRFMGIT 699 (959)
Q Consensus 633 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~----il~~~~------~~~~i~---e~~~~~l~~~~~~~~~~~~~~ 699 (959)
....+++++.++.....++...+++..+++.+.. ++.... .+++.. -.++.++..+.+.+|..+.|+
T Consensus 606 ~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~ 685 (1049)
T 3m1i_C 606 VHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQ 685 (1049)
T ss_dssp HHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3445788888887665333455566666654332 222111 122222 234556667778888888887
Q ss_pred HHHHHHHHHHHHhhc-----------C-----Cc------chhHhHHHHHHHhCCCcc-chHHHHHHHHHHHHHHHHhhc
Q 002148 700 IGAILEEIQGLYQQH-----------Q-----QP------CFLYLSSEVIKIFGSDPS-CASYLHNLIEALFKRTTCLLT 756 (959)
Q Consensus 700 l~~l~~~l~~~~~~~-----------~-----~~------~~L~l~~~li~~~~~~~~-~~~~l~~~~~~l~~~~~~~l~ 756 (959)
++.+...++..|+.. . ++ .+...+..++..|..+.. ....+...+..++...+..++
T Consensus 686 ~~~i~~~~l~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~~~l~~~~~~~~~~~l~~ll~~~~ 765 (1049)
T 3m1i_C 686 LGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYM 765 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCchhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 776655444434321 0 00 011111122233322111 111122222223333333332
Q ss_pred CcccCCCCCCcHHHHHHHHHHHHhhCCCcccC--cCChHHHHHHHHHhcc---CCCchhHHHHHHHHHHhhcCc
Q 002148 757 SIEEFTSRPDVADDCFLLASRCIRYCPQLFIP--SSVFPSLVDCSMIGIT---VQHREASNSILTFLSDIFDLA 825 (959)
Q Consensus 757 ~~~~~~~~pDl~~~~f~l~~~~~~~~p~~~l~--s~~l~~~~~~~~~~l~---~~~~~~~~~~~~fl~~li~~~ 825 (959)
. ....-.| ..++.+++.++...+..+-+ ...+..++++....+. ..+++...+.+.|+..++..+
T Consensus 766 ~--~~~~~~~--~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~ 835 (1049)
T 3m1i_C 766 N--NVPDARD--AEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKS 835 (1049)
T ss_dssp H--SCGGGCC--THHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHC
T ss_pred h--CCccccc--HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcchhhCHHHHHHHHHHHHHHHHhC
Confidence 1 0001011 46888888888866543322 1234444555443332 357888899999999988643
No 46
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=94.97 E-value=6.3 Score=44.54 Aligned_cols=388 Identities=12% Similarity=0.114 Sum_probs=185.0
Q ss_pred CCchHHHHHHHHHHHHhhhccCCCCCCCCchhHHHH-HHHHHHhhHHHhhhcCCCHHHHHHHHHHHHHhhh---HHHHHH
Q 002148 232 SEILSEASVNVISELIHYSAAGSSGGATVNMPLIQV-IVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGD---SYVELI 307 (959)
Q Consensus 232 ~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~-l~~~v~~l~~~l~~~~~d~e~~~~l~~l~~~~~~---~~~~~l 307 (959)
+++....|+..+..+++....+ ....+++. ++|.++. -+ ...++.+.-..-+.++..++. .....+
T Consensus 70 d~~~q~~a~~~~rklls~e~~p------pi~~ii~~G~ip~LV~---lL-~~~~~~~lq~~Aa~aL~nias~~~e~~~~v 139 (510)
T 3ul1_B 70 NLESQLQATQAARKLLSREKQP------PIDNIIRAGLIPKFVS---FL-GKTDCSPIQFESAWALTNIASGTSEQTKAV 139 (510)
T ss_dssp CHHHHHHHHHHHHHHHTCSSCC------CHHHHHHTTHHHHHHH---HT-TCTTCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCCc------hHHHHHHCCCHHHHHH---HH-CCCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3466778888888888764321 11123321 2343332 22 223334433344555555432 122333
Q ss_pred hcCCchHHHHHHHHHhhccCCCcchhhhhHHhHHHhHHHHhhcccccccCcccchHHHHHHHHhhhHHHHHHHHHHHHhh
Q 002148 308 ATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFR 387 (959)
Q Consensus 308 ~~~~~~~~~~l~~ll~~~~~~~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~~k 387 (959)
.+. ..++.++.+...++.++.+.+..-...+..+- + ..+...... -.+..++.-
T Consensus 140 v~~-----GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~----------~--------~~r~~v~~~---G~i~~Ll~l 193 (510)
T 3ul1_B 140 VDG-----GAIPAFISLLASPHAHISEQAVWALGNIAGDG----------S--------AFRDLVIKH---GAIDPLLAL 193 (510)
T ss_dssp HHT-----THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC----------H--------HHHHHHHHT---TCHHHHHHH
T ss_pred HHC-----CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC----------H--------HHHHHHHHc---CChHHHHHH
Confidence 322 25777788888888888887775544443110 0 000000000 012222232
Q ss_pred ccCCCCCCCCChhhhHHHHHHHHHhhHHHHHhhhccC---hHHHHHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHhh
Q 002148 388 VQYPQDYQDLSLEDLKEFKHTRYAVADVLIDAASVLG---GDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAIS 464 (959)
Q Consensus 388 ~~~p~d~~~~~~d~~~~f~~~R~~~~d~l~~~~~il~---~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~l~ 464 (959)
+..++. +... ....+.+..++..++.--. .-.....+.+.|.+.+. +.+..-.+.++++++.++
T Consensus 194 L~~~~~-~~~~-------~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~-----~~~~~v~~~A~~aL~~L~ 260 (510)
T 3ul1_B 194 LAVPDL-STLA-------CGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH-----HNDPEVLADSCWAISYLT 260 (510)
T ss_dssp TCSSCG-GGSC-------HHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTT-----CSCHHHHHHHHHHHHHHT
T ss_pred HHhccc-hhhh-------HHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHh-----cCCHHHHHHHHHHHHHHh
Confidence 333321 1100 1122233334444442111 11122334444554432 345566788899999888
Q ss_pred cccCCc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhhhhHHhhCCCChhhH-HHHHHHHHhccCCCH-HHHHHH
Q 002148 465 TYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSIL-ASVLSILTSGMSTSE-DTAAAA 537 (959)
Q Consensus 465 e~~~~~-----~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l-~~~l~~l~~~l~~~~-~v~~~A 537 (959)
+.-... +...++.+++++.. .++.++..++.++|..+..-..... ..+ ..++..+...+.+++ .++..|
T Consensus 261 ~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~al~aL~nl~~~~~~~~~--~i~~~g~l~~L~~LL~~~~~~v~~~A 336 (510)
T 3ul1_B 261 DGPNERIEMVVKKGVVPQLVKLLGA--TELPIVTPALRAIGNIVTGTDEQTQ--KVIDAGALAVFPSLLTNPKTNIQKEA 336 (510)
T ss_dssp SSCHHHHHHHHTTTCHHHHHHHHTC--SCHHHHHHHHHHHHHHTTSCHHHHH--HHHHTTGGGGCC-CTTCSSHHHHHHH
T ss_pred hchhhhHHHHHhcccchhhhhhhcC--CChhhhhHHHHHHHHhhcCCHHHHH--HHhhccchHHHHHHhcCCCHHHHHHH
Confidence 654321 23456667766654 3678999999999987531110000 000 112233344455543 499999
Q ss_pred HHHHHHHHHHhhhhhhCCH-HHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHH
Q 002148 538 ALAFRHICDDCRKKLCGYL-DGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQE 616 (959)
Q Consensus 538 ~~al~~lc~~c~~~L~~~~-~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~ 616 (959)
+.++.+++........... ..++..+..++.. -+.+.+.....+++.++..-..+.....++. ..+..|-.
T Consensus 337 ~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~-----~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~---g~i~~L~~ 408 (510)
T 3ul1_B 337 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK-----ADFKTQKEAAWAITNYTSGGTVEQIVYLVHC---GIIEPLMN 408 (510)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHS-----SCHHHHHHHHHHHHHHHHHCCHHHHHHHHHT---TCHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcC-----CCHHHHHHHHHHHHHHHccCCHHHHHHHHHC---CCHHHHHH
Confidence 9999999864332211111 1233444444443 2567888889999988876555444322221 22233334
Q ss_pred HHhcCCCcccccCchhhhHHHHHHHHHhhhcC---CcccHHHHHHHH--hHHHHHHHHhhcccHHHHHHHHHHHHHHH
Q 002148 617 IINQGPEILQKKHPRDLTVHIDRFAYIFRYVN---HPEAVADAIQRL--WPIFKAIFDIRAWDMRTMESLCRACKYAV 689 (959)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~---~~~~~~~~~~~~--~~~l~~il~~~~~~~~i~e~~~~~l~~~~ 689 (959)
++...+ .+-....++.|..+++... ..+.+...+++. +..++.+. ...+.+|.+.+..++.+-+
T Consensus 409 LL~~~d-------~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq--~~~n~~i~~~A~~iie~yf 477 (510)
T 3ul1_B 409 LLSAKD-------TKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQ--RHENESVYKASLNLIEKYF 477 (510)
T ss_dssp GGGCSC-------HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGG--GCSSHHHHHHHHHHHHHHC
T ss_pred HhcCCC-------HHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHH--cCCCHHHHHHHHHHHHHHC
Confidence 443321 1223334566666655432 223333333332 23333321 2346678888777766544
No 47
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=94.24 E-value=1.3 Score=50.30 Aligned_cols=312 Identities=11% Similarity=0.158 Sum_probs=147.2
Q ss_pred chHHHhhhccCCCCcHHHHHHHHHHHHhhhhHHhhCCCChhhH-HHHHHHHHhccCCCH-HHHHHHHHHHHHHHHH---h
Q 002148 474 VMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSIL-ASVLSILTSGMSTSE-DTAAAAALAFRHICDD---C 548 (959)
Q Consensus 474 ~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l-~~~l~~l~~~l~~~~-~v~~~A~~al~~lc~~---c 548 (959)
.+|.++++|.. .+++.++..++++++..+.--..+.. ... ..+++.++..+.++. +++..|+.||.+++.+ +
T Consensus 101 ~ip~LV~lL~~-~~~~~lq~~Aa~aL~nias~~~e~~~--~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~ 177 (510)
T 3ul1_B 101 LIPKFVSFLGK-TDCSPIQFESAWALTNIASGTSEQTK--AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177 (510)
T ss_dssp HHHHHHHHTTC-TTCHHHHHHHHHHHHHHHTSCHHHHH--HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHCC-CCCHHHHHHHHHHHHHHhcCCHHHHH--HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 45666666644 34789999999999987632111110 011 124555566666553 4999999999999854 4
Q ss_pred hhhhh--CCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCccc
Q 002148 549 RKKLC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQ 626 (959)
Q Consensus 549 ~~~L~--~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~ 626 (959)
+..+. .-++.++..+ ..++...........+..+++.+...-.+.........++. .+..++....
T Consensus 178 r~~v~~~G~i~~Ll~lL----~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp----~L~~LL~~~~---- 245 (510)
T 3ul1_B 178 RDLVIKHGAIDPLLALL----AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILP----TLVRLLHHND---- 245 (510)
T ss_dssp HHHHHHTTCHHHHHHHT----CSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHH----HHHHHTTCSC----
T ss_pred HHHHHHcCChHHHHHHH----HhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHH----HHHHHHhcCC----
Confidence 54443 4455555543 32211122333445566666666654221111122222333 2333443221
Q ss_pred ccCchhhhHHHHHHHHHhhhcCCcccHHHHH--HHHhHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhhhhhh-----hh
Q 002148 627 KKHPRDLTVHIDRFAYIFRYVNHPEAVADAI--QRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMG-----IT 699 (959)
Q Consensus 627 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~--~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~~~~~~~~~~-----~~ 699 (959)
.........+++.+... +......+ ..+.|.+..++. ..+..+...++++++.+...-..... ..
T Consensus 246 ---~~v~~~A~~aL~~L~~~---~~~~~~~i~~~g~i~~Lv~lL~--~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~ 317 (510)
T 3ul1_B 246 ---PEVLADSCWAISYLTDG---PNERIEMVVKKGVVPQLVKLLG--ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGA 317 (510)
T ss_dssp ---HHHHHHHHHHHHHHTSS---CHHHHHHHHTTTCHHHHHHHHT--CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTG
T ss_pred ---HHHHHHHHHHHHHHhhc---hhhhHHHHHhcccchhhhhhhc--CCChhhhhHHHHHHHHhhcCCHHHHHHHhhccc
Confidence 11122334455554332 21111111 134455555543 24567778888887765432111110 11
Q ss_pred HHHHHHHHHHHHhhcCCcchhHhHHHHHHHhCCCccchHHHHHHHHH-HHHHHHHhhcCcccCCCCCCcHHHHHHHHHHH
Q 002148 700 IGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEA-LFKRTTCLLTSIEEFTSRPDVADDCFLLASRC 778 (959)
Q Consensus 700 l~~l~~~l~~~~~~~~~~~~L~l~~~li~~~~~~~~~~~~l~~~~~~-l~~~~~~~l~~~~~~~~~pDl~~~~f~l~~~~ 778 (959)
++.++..+ .++....-.-+...+....... ......++.. ++...+.++. ..++++...-...+..+
T Consensus 318 l~~L~~LL-----~~~~~~v~~~A~~aL~nl~a~~--~~~~~~v~~~g~i~~Lv~lL~-----~~~~~v~~~Aa~aL~Nl 385 (510)
T 3ul1_B 318 LAVFPSLL-----TNPKTNIQKEATWTMSNITAGR--QDQIQQVVNHGLVPFLVGVLS-----KADFKTQKEAAWAITNY 385 (510)
T ss_dssp GGGCC-CT-----TCSSHHHHHHHHHHHHHHTTSC--HHHHHHHHHTTHHHHHHHHHH-----SSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHh-----cCCCHHHHHHHHHHHHHHHcCc--HHHHHHHHhcCCHHHHHHHHc-----CCCHHHHHHHHHHHHHH
Confidence 12222111 1222222233333333333221 1112222221 3333344444 34567776655555555
Q ss_pred HhhCC-C---cccCcCChHHHHHHHHHhccCCCchhHHHHHHHHHHhhcC
Q 002148 779 IRYCP-Q---LFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDL 824 (959)
Q Consensus 779 ~~~~p-~---~~l~s~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~li~~ 824 (959)
..... . .+.....++.++++ +...++.....++..+..++..
T Consensus 386 ~~~~~~~~~~~L~~~g~i~~L~~L----L~~~d~~i~~~~L~aL~nil~~ 431 (510)
T 3ul1_B 386 TSGGTVEQIVYLVHCGIIEPLMNL----LSAKDTKIIQVILDAISNIFQA 431 (510)
T ss_dssp HHHCCHHHHHHHHHTTCHHHHHHG----GGCSCHHHHHHHHHHHHHHHHH
T ss_pred HccCCHHHHHHHHHCCCHHHHHHH----hcCCCHHHHHHHHHHHHHHHHH
Confidence 54322 1 12233445555554 6678888889999999888864
No 48
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=93.81 E-value=2.9 Score=47.70 Aligned_cols=312 Identities=11% Similarity=0.146 Sum_probs=147.0
Q ss_pred cchHHHhhhccCCCCcHHHHHHHHHHHHhhhhHHhhCCCChhhH-HHHHHHHHhccCCCH-HHHHHHHHHHHHHHH---H
Q 002148 473 EVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSIL-ASVLSILTSGMSTSE-DTAAAAALAFRHICD---D 547 (959)
Q Consensus 473 ~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l-~~~l~~l~~~l~~~~-~v~~~A~~al~~lc~---~ 547 (959)
..+|.++++|..- +++.++..++++++..+..-..+.. ..+ ..+++.++..+.++. +++..|+.||.+|+. .
T Consensus 119 G~ip~Lv~lL~~~-~~~~~q~~Aa~aL~nia~~~~~~~~--~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~ 195 (529)
T 3tpo_A 119 GLIPKFVSFLGKT-DCSPIQFESAWALTNIASGTSEQTK--AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSA 195 (529)
T ss_dssp THHHHHHHHHTCT-TCHHHHHHHHHHHHHHHTSCHHHHH--HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHcCC-CCHHHHHHHHHHHHHHHcCCHHHHH--HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHH
Confidence 3466666666443 4788999999999987642221110 011 124555556566553 499999999999985 4
Q ss_pred hhhhhh--CCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcc
Q 002148 548 CRKKLC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEIL 625 (959)
Q Consensus 548 c~~~L~--~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~ 625 (959)
++..+. +-++.++..+ ..+............+..+++.+...-.+.........++. .+..++....
T Consensus 196 ~r~~i~~~g~i~~Ll~lL----~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp----~L~~LL~~~~--- 264 (529)
T 3tpo_A 196 FRDLVIKHGAIDPLLALL----AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILP----TLVRLLHHND--- 264 (529)
T ss_dssp HHHHHHHTTCHHHHHHTT----CSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHH----HHHHHTTSSC---
T ss_pred HHHHHHHcCCcHHHHHHH----hccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHH----HHHHHhcCCc---
Confidence 555444 3455555443 32111112233344555566665554222111122222232 2333443221
Q ss_pred cccCchhhhHHHHHHHHHhhhcCCcccHHHHH--HHHhHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhhhhh-----hh
Q 002148 626 QKKHPRDLTVHIDRFAYIFRYVNHPEAVADAI--QRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFM-----GI 698 (959)
Q Consensus 626 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~--~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~~~~~~~~~-----~~ 698 (959)
.........+++.+..+ ++.....+ ..+.|.+..++. ..+..+.+.++++++.+...-.... ..
T Consensus 265 ----~~v~~~a~~aL~~l~~~---~~~~~~~v~~~g~i~~Lv~lL~--~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g 335 (529)
T 3tpo_A 265 ----PEVLADSCWAISYLTDG---PNERIEMVVKKGVVPQLVKLLG--ATELPIVTPALRAIGNIVTGTDEQTQKVIDAG 335 (529)
T ss_dssp ----HHHHHHHHHHHHHHHSS---CHHHHHHHHTTTCHHHHHHHHT--CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred ----HHHHHHHHHHHHHhhhh---hhhhHHHHHhccchHHHHHHhc--CCChhHHHHHHHHHHHHHccchHHHHHHhhcc
Confidence 11122334444444332 21111111 234455555543 2456778888888876543211111 11
Q ss_pred hHHHHHHHHHHHHhhcCCcchhHhHHHHHHHhC-CCccchHHHHHHHHH-HHHHHHHhhcCcccCCCCCCcHHHHHHHHH
Q 002148 699 TIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFG-SDPSCASYLHNLIEA-LFKRTTCLLTSIEEFTSRPDVADDCFLLAS 776 (959)
Q Consensus 699 ~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~~~-~~~~~~~~l~~~~~~-l~~~~~~~l~~~~~~~~~pDl~~~~f~l~~ 776 (959)
.++.++..+ .++....-.-+...+.... ..+. ....++.. ++...+.++. ..++++...-...+.
T Consensus 336 ~l~~L~~LL-----~~~~~~i~~~a~~aL~nl~~~~~~---~~~~v~~~g~i~~Lv~lL~-----~~~~~v~~~A~~aL~ 402 (529)
T 3tpo_A 336 ALAVFPSLL-----TNPKTNIQKEATWTMSNITAGRQD---QIQQVVNHGLVPFLVGVLS-----KADFKTQKAAAWAIT 402 (529)
T ss_dssp GGGGHHHHT-----TCSSHHHHHHHHHHHHHHHTSCHH---HHHHHHHTTHHHHHHHHHH-----SSCHHHHHHHHHHHH
T ss_pred cHHHHHHHH-----cCCCHHHHHHHHHHHHHHhcccHH---HHHHHHhcCcHHHHHHHhc-----CCCHHHHHHHHHHHH
Confidence 223333322 1222222222222222222 2211 11112211 3333344444 345667666555555
Q ss_pred HHHhhC-CC---cccCcCChHHHHHHHHHhccCCCchhHHHHHHHHHHhhcC
Q 002148 777 RCIRYC-PQ---LFIPSSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDL 824 (959)
Q Consensus 777 ~~~~~~-p~---~~l~s~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~li~~ 824 (959)
.+.... +. .+.....++.++++ +...++.....++..+..++..
T Consensus 403 nl~~~~~~~~~~~l~~~g~i~~L~~L----L~~~d~~i~~~~L~aL~nil~~ 450 (529)
T 3tpo_A 403 NYTSGGTVEQIVYLVHCGIIEPLMNL----LSAKDTKIIQVILDAISNIFQA 450 (529)
T ss_dssp HHHHHSCHHHHHHHHHTTCHHHHHHG----GGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHCcCHHHHHHH----hcCCCHHHHHHHHHHHHHHHHH
Confidence 555432 21 12233445555444 6678888889999999888864
No 49
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=93.39 E-value=1.1 Score=45.21 Aligned_cols=136 Identities=10% Similarity=0.098 Sum_probs=87.9
Q ss_pred CCcchhhhhHHhHHHhHHHHhhcccccccCcccchHHHHHHHHhhhHHH-HHHHHHHHHhhccCCCCCCCCChhhhHHHH
Q 002148 328 PEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSA-YESLVSLVSFRVQYPQDYQDLSLEDLKEFK 406 (959)
Q Consensus 328 ~~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Ll~~l~~k~~~p~d~~~~~~d~~~~f~ 406 (959)
.+..+...++++...+.+.+.+. .|. +.++ ...+++.++.|+-=+ .+
T Consensus 99 ~N~~v~~~~L~~L~~l~~~l~~~-~y~------------------~~~~ea~~~lP~LveKlGd~----------k~--- 146 (266)
T 2of3_A 99 TNPAALIKVLELCKVIVELIRDT-ETP------------------MSQEEVSAFVPYLLLKTGEA----------KD--- 146 (266)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHT-TCC------------------CCHHHHHHHHHHHHHGGGCS----------SH---
T ss_pred CCHHHHHHHHHHHHHHHHHHHhc-ccc------------------chHHHHHHHHHHHHHHhCCC----------hH---
Confidence 46678888888888777666432 121 1111 234566677777221 12
Q ss_pred HHHHHhhHHHHHhhhccChHHHHHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHhhcccCCccccch---HHHhhhcc
Q 002148 407 HTRYAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVM---PQVMALLP 483 (959)
Q Consensus 407 ~~R~~~~d~l~~~~~il~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~l~e~~~~~~~~~l---~~l~~~l~ 483 (959)
.+|..+.++++.++.+.++..++.++.+.+. +.+|+.+|.|+..+.++-+.........+ +.+...+.
T Consensus 147 ~vR~~~r~il~~l~~v~~~~~v~~~l~~g~k---------sKN~R~R~e~l~~l~~li~~~G~~~~~~l~~~~~ia~ll~ 217 (266)
T 2of3_A 147 NMRTSVRDIVNVLSDVVGPLKMTPMLLDALK---------SKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVAPFVG 217 (266)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHGGG---------CSCHHHHHHHHHHHHHHHHHHCSGGGGGGCHHHHHGGGGG
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHc---------cCCHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHc
Confidence 3677888888888888787767666555332 56799999999999988665433323344 44444444
Q ss_pred CCCCcHHHHHHHHHHHHhhhhHH
Q 002148 484 KLPQQPQLLQTVCLTIGAYSKWF 506 (959)
Q Consensus 484 ~lp~~~~v~~t~~~~ig~y~~~l 506 (959)
. .++.||.+++.++.......
T Consensus 218 D--~d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 218 D--KDVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp C--SSHHHHHHHHHHHHHHHHHH
T ss_pred C--CCHHHHHHHHHHHHHHHHHh
Confidence 3 37899999999998766544
No 50
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=92.57 E-value=2.6 Score=42.19 Aligned_cols=218 Identities=13% Similarity=0.111 Sum_probs=118.1
Q ss_pred CCcchhhHHHHHHHHhhcccCCc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhhhhHHhhCCCChhhH-HHHHH
Q 002148 448 NEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSIL-ASVLS 521 (959)
Q Consensus 448 ~~w~~~Ea~l~~l~~l~e~~~~~-----~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l-~~~l~ 521 (959)
.+....+.++++++.++..-+.. +...++.+++.+.. .++.++..++++++..+..-..+.. ... ...++
T Consensus 14 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~--~~~~~~~i~ 89 (252)
T 4hxt_A 14 TDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS--TDSEVQKEAARALANIASGPDEAIK--AIVDAGGVE 89 (252)
T ss_dssp SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSCHHHHH--HHHHTTHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHHHcCChHHHH--HHHHCCCHH
Confidence 44666788888888887655422 12456666666654 3688999999999988742111000 000 12344
Q ss_pred HHHhccCCC-HHHHHHHHHHHHHHHHH---hhhhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCChH
Q 002148 522 ILTSGMSTS-EDTAAAAALAFRHICDD---CRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQV 597 (959)
Q Consensus 522 ~l~~~l~~~-~~v~~~A~~al~~lc~~---c~~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~ 597 (959)
.+...+.++ .+++..|+.++.++|.. .+..+.. ...+..+.+++.. -+.+.+.....+++.+...-+ +
T Consensus 90 ~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~~l~~-----~~~~~~~~a~~~L~~l~~~~~-~ 161 (252)
T 4hxt_A 90 VLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVD--AGGVEVLVKLLTS-----TDSEVQKEAARALANIASGPD-E 161 (252)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHHHHTTC-----SCHHHHHHHHHHHHHHTTSCH-H
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH--CCCHHHHHHHHcC-----CCHHHHHHHHHHHHHHHcCCH-H
Confidence 455555544 34999999999999952 3333321 1233444444543 246778888888888776532 2
Q ss_pred HHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCCcccHHHHH-HHHhHHHHHHHHhhcccHH
Q 002148 598 DAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAI-QRLWPIFKAIFDIRAWDMR 676 (959)
Q Consensus 598 ~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~il~~~~~~~~ 676 (959)
......+ ...+..+..++.... .......+..++.+... .++....+. ...++.+..++. ..+++
T Consensus 162 ~~~~~~~---~~~i~~L~~ll~~~~-------~~v~~~a~~~L~~l~~~--~~~~~~~l~~~~~i~~L~~ll~--~~~~~ 227 (252)
T 4hxt_A 162 AIKAIVD---AGGVEVLVKLLTSTD-------SEVQKEAARALANIASG--PTSAIKAIVDAGGVEVLQKLLT--STDSE 227 (252)
T ss_dssp HHHHHHH---TTHHHHHHHHTTCSC-------HHHHHHHHHHHHHHTTS--BHHHHHHHHHTTHHHHHHHGGG--CSCHH
T ss_pred HHHHHHH---CcCHHHHHHHHCCCC-------HHHHHHHHHHHHHHHcC--CHHHHHHHHHCCCHHHHHHHHC--CCcHH
Confidence 2222211 233444445554321 11112345556665542 121111111 234555555443 34668
Q ss_pred HHHHHHHHHHHHHHH
Q 002148 677 TMESLCRACKYAVRT 691 (959)
Q Consensus 677 i~e~~~~~l~~~~~~ 691 (959)
+.+.++.++..+...
T Consensus 228 v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 228 VQKEAQRALENIKSG 242 (252)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcC
Confidence 888888888876654
No 51
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=92.42 E-value=2.2 Score=51.71 Aligned_cols=222 Identities=16% Similarity=0.182 Sum_probs=131.4
Q ss_pred hHHHHHHHHhhcccCCc--cccchHHHhhhccC-CC-CcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccCC
Q 002148 454 EAALFCIRAISTYVSVV--EAEVMPQVMALLPK-LP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMST 529 (959)
Q Consensus 454 Ea~l~~l~~l~e~~~~~--~~~~l~~l~~~l~~-lp-~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~ 529 (959)
|+++.+++++++..... ..+++-.++..+.. .. ....||.++-..+-.+..-+ +|. -+..+++.++.++..
T Consensus 70 ~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~--~~~---a~~~~~~~~~~~~~~ 144 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAV--NPV---AIKALLPHLTNAIVE 144 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS--CGG---GHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhC--CHH---HHHHHHHHHHHHhcc
Confidence 99999999999776542 12222222222222 22 24668887777666655433 333 345566666665543
Q ss_pred CH--HHHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCChHHHHH----HH
Q 002148 530 SE--DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKK----AL 603 (959)
Q Consensus 530 ~~--~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~----~l 603 (959)
.. .....|...+.++++.+...+.-.++.++..+...+- ....+......+++-.+.+.+.+.++.+ .+
T Consensus 145 ~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-----d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~ 219 (986)
T 2iw3_A 145 TNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMW-----DTKKEVKAAATAAMTKATETVDNKDIERFIPSLI 219 (986)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTT-----CSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcc-----cCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHH
Confidence 31 2678888999999999988888899999988888764 3556666666666666666555443322 22
Q ss_pred HHhhhhhHHHHHHHHhcCCCc----c--------------------cccCchhhhHHHHHHHHHhhhcCCcccHHHHHHH
Q 002148 604 EMLCLPVVTPLQEIINQGPEI----L--------------------QKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQR 659 (959)
Q Consensus 604 ~~ll~p~~~~l~~~~~~~~~~----~--------------------~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 659 (959)
+.+..| +...+++..-.+. . .....|+.+..++.|+.++ .+|..+.+++..
T Consensus 220 ~~~~~p--~~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv---~~~~~~~~f~~~ 294 (986)
T 2iw3_A 220 QCIADP--TEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLV---EDPQVIAPFLGK 294 (986)
T ss_dssp HHHHCT--THHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTC---CCHHHHHHHHTT
T ss_pred HHhcCh--hhhHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhc---CCHHHHhhhhhh
Confidence 222223 2233332221110 0 0001122233445555553 457777888888
Q ss_pred HhHHHHHHHHhhcccHHHHHHHHHHHHHHHHH
Q 002148 660 LWPIFKAIFDIRAWDMRTMESLCRACKYAVRT 691 (959)
Q Consensus 660 ~~~~l~~il~~~~~~~~i~e~~~~~l~~~~~~ 691 (959)
++|-++.+.+. ..+++++|.+-+++..+.+.
T Consensus 295 l~p~~~~~~~~-~~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 295 LLPGLKSNFAT-IADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp THHHHHHHTTT-CCSHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHhhc-cCCHHHHHHHHHHHHHHHHh
Confidence 88988876655 46789999888888766654
No 52
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=92.07 E-value=11 Score=38.85 Aligned_cols=149 Identities=11% Similarity=0.096 Sum_probs=82.9
Q ss_pred chHHHhh-hccCCCCcHHHHHHHHHHHHhhhhHHhhCCCCh------hhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 002148 474 VMPQVMA-LLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDP------SILASVLSILTSGMSTSEDTAAAAALAFRHICD 546 (959)
Q Consensus 474 ~l~~l~~-~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~------~~l~~~l~~l~~~l~~~~~v~~~A~~al~~lc~ 546 (959)
.++.++. .|.+ .++.++..+++++|..+. .+|... .-+++++..+... .+..++..|++||..+|.
T Consensus 82 ~l~~Lv~~lL~s--~~~~vr~~Aa~~Lg~ia~---~n~~~~~~vv~~g~l~~Ll~LL~~~--~~~~v~~~A~~ALsnl~~ 154 (296)
T 1xqr_A 82 GMHLLVGRYLEA--GAAGLRWRAAQLIGTCSQ---NVAAIQEQVLGLGALRKLLRLLDRD--ACDTVRVKALFAISCLVR 154 (296)
T ss_dssp HHHHHHHTTTTC--SSHHHHHHHHHHHHHHHT---TCHHHHHHHHHTTHHHHHHHHHHHC--SCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcC--CCHHHHHHHHHHHHHHHh---CCHHHHHHHHHCCCHHHHHHHHccC--CCHHHHHHHHHHHHHHHc
Confidence 4566666 5432 378999999999998763 122100 1456666555431 123499999999999997
Q ss_pred HhhhhhhCCHH-HHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHH-HhhhhhHHHHHHHHhcCCCc
Q 002148 547 DCRKKLCGYLD-GLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALE-MLCLPVVTPLQEIINQGPEI 624 (959)
Q Consensus 547 ~c~~~L~~~~~-~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~-~ll~p~~~~l~~~~~~~~~~ 624 (959)
........+.. ..+..+..++.. -+...+....-+++.+... .++......+ ..+.+++ .++.....
T Consensus 155 ~~~~~~~~~~~~ggi~~L~~lL~~-----~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i~~Lv----~LL~~~d~- 223 (296)
T 1xqr_A 155 EQEAGLLQFLRLDGFSVLMRAMQQ-----QVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMVQQLV----ALVRTEHS- 223 (296)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHHHS-----SCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHHHHHH----HHHTSCCS-
T ss_pred CCcHHHHHHHHCCCHHHHHHHHcC-----CCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCHHHHH----HHHcCCCh-
Confidence 54432211111 233344444443 2567888889999988877 3333332222 2344443 44443221
Q ss_pred ccccCchhhhHHHHHHHHHhhh
Q 002148 625 LQKKHPRDLTVHIDRFAYIFRY 646 (959)
Q Consensus 625 ~~~~~~~~~~~~l~~l~~~~~~ 646 (959)
.-....+..++.+.+.
T Consensus 224 ------~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 224 ------PFHEHVLGALCSLVTD 239 (296)
T ss_dssp ------THHHHHHHHHHHHHTT
T ss_pred ------hHHHHHHHHHHHHHhC
Confidence 1123456677776664
No 53
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=91.97 E-value=26 Score=41.93 Aligned_cols=253 Identities=12% Similarity=0.074 Sum_probs=130.8
Q ss_pred HccCCCHHHHHHHHHHHHHHhc----------ChhhHHHHHHHhccCCCChhHHHHHHHHHHhhhhcCCCCCChhhHH-H
Q 002148 14 LYHHPDDAVRMQADRWLQDFQH----------TIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVR-G 82 (959)
Q Consensus 14 l~~~~d~~~r~~A~~~L~~~q~----------s~~aw~~~~~lL~~~~~~~~~~~faa~~L~~ki~~~w~~l~~~~~~-~ 82 (959)
+..+.|+..|..|-..|..+-. .+++......+|.+ +.+.++|..|+..|++ +... .+.+. .
T Consensus 158 lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~-~~d~~vr~~Aa~aL~~-Ls~~-----~~~~~~i 230 (780)
T 2z6g_A 158 LLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN-TNDVETARCTSGTLHN-LSHH-----REGLLAI 230 (780)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH-HHTS-----HHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcC-CCCHHHHHHHHHHHHH-HhCC-----chhHHHH
Confidence 3446788999999999888765 34666667777765 4578899999999998 3322 22222 2
Q ss_pred HHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHhhccccccC---CccchHHHHHhcCCCC-CchhhHHHHhccccccccc
Q 002148 83 LQDSLNTLLKKFH-KGPPKVRTQISIAVAALAVHISAEDWG---GGGIVNWLRDEMNSHP-EFVPGFLELLTVLPEEVFN 157 (959)
Q Consensus 83 lr~~Ll~~l~~~~-~~~~~v~~kL~~~la~l~~~~~~~~Wp---~~~~~~~l~~~l~~~~-~~~~~~L~~L~~l~EE~~~ 157 (959)
.+...+..|..+. .+...++...+.+|..+...... ... +.+.++.++..+.+.. ......+..|..+...
T Consensus 231 ~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~-~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~--- 306 (780)
T 2z6g_A 231 FKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEG-AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG--- 306 (780)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTT-HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT---
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChh-hHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcC---
Confidence 2223444555443 34567888888888888764321 111 0125667777776532 1223444455444321
Q ss_pred ccccCChhHHHHHHHHHHHhHHHHHHHHHHhhhhhHhHHHHHHHHHHHHhccCCCCCcccccchhHHHHHhcCCCC--ch
Q 002148 158 YKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSE--IL 235 (959)
Q Consensus 158 ~~~~l~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~~~~~~~l~~~~sWi~~~~~~~~~~~~~~~ll~~~~~~L~~~--~~ 235 (959)
..+-|..+.+ ....+.++.++... ........+..++....... -....+.....++.+...+.++ ++
T Consensus 307 -----~~e~~~~i~~--~~~i~~Lv~lL~~~-~~~~~~~~a~~aL~~Ls~~~--~~~~~i~~~g~l~~Ll~lL~~~~~~~ 376 (780)
T 2z6g_A 307 -----NQESKLIILA--SGGPQALVNIMRTY-TYEKLLWTTSRVLKVLSVCS--SNKPAIVEAGGMQALGLHLTDPSQRL 376 (780)
T ss_dssp -----CHHHHHHHHT--TTHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHTST--THHHHHHHTTHHHHHGGGTTCSCHHH
T ss_pred -----ChHHHHHHHH--cCCHHHHHHHHhcC-CHHHHHHHHHHHHHHhhcCh--HHHHHHHHhchHHHHHHHHcCCchHH
Confidence 0111111111 12233344433221 11123333444444332210 0001223445677788888654 46
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhhhcCCCHHHHHHHHHHHHHhhh
Q 002148 236 SEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGD 301 (959)
Q Consensus 236 ~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~l~~~~~d~e~~~~l~~l~~~~~~ 301 (959)
...|+.++..+....... ... ..+++.++.+ + ...+.+.....+.++..++.
T Consensus 377 ~~~a~~~L~~L~~~~~~~-----~~~----~~~i~~Lv~l---L--~~~d~~vr~~A~~aL~~L~~ 428 (780)
T 2z6g_A 377 VQNCLWTLRNLSDAATKQ-----EGM----EGLLGTLVQL---L--GSDDINVVTCAAGILSNLTC 428 (780)
T ss_dssp HHHHHHHHHHHHTTCTTC-----SCC----HHHHHHHHHH---T--TCSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhccchhh-----hhh----hhHHHHHHHH---H--cCCCHHHHHHHHHHHHHHHh
Confidence 777888888887544211 011 1223333221 1 23455566666677776654
No 54
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=90.67 E-value=17 Score=39.49 Aligned_cols=278 Identities=12% Similarity=0.060 Sum_probs=130.5
Q ss_pred cHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHH
Q 002148 488 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTA 566 (959)
Q Consensus 488 ~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~ 566 (959)
++...+-+...|.+|... .|+ +-..+++.++.-..+.+ .++..|-+.|-.||++ .+++.+.+++.++
T Consensus 41 ~~k~K~LaaQ~I~kffk~---FP~---l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~Ql 108 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFFKH---FPE---LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG------ENLPRVADILTQL 108 (507)
T ss_dssp CHHHHHHHHHHHHHHGGG---CGG---GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhh---Chh---hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHHH
Confidence 567777888888877544 454 56677777766555443 4788888788777766 4577777777777
Q ss_pred hhccCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhh-----------hHHHHHHHHhcCCCcccccC------
Q 002148 567 VNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLP-----------VVTPLQEIINQGPEILQKKH------ 629 (959)
Q Consensus 567 ~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p-----------~~~~l~~~~~~~~~~~~~~~------ 629 (959)
++.. +..+...+=.++..++..-|.......+.++.++ +..++..+.......+.+..
T Consensus 109 Lqtd-----d~~E~~~V~~sL~sllk~Dpk~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ik 183 (507)
T 3u0r_A 109 LQTD-----DSAEFNLVNNALLSIFKMDAKGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESK 183 (507)
T ss_dssp TTCC-----CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHH
T ss_pred Hhcc-----chHHHHHHHHHHHHHHhcChHHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHH
Confidence 7641 2334444444444444433222222222222211 11111110000000000000
Q ss_pred --chhh-hHHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHh---hc-ccHHHHHHHHHHHHHHHHHh--hhhhhhhH
Q 002148 630 --PRDL-TVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDI---RA-WDMRTMESLCRACKYAVRTS--KRFMGITI 700 (959)
Q Consensus 630 --~~~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~---~~-~~~~i~e~~~~~l~~~~~~~--~~~~~~~l 700 (959)
..++ ......+-.+++.+.....+ .-.+++.+++...... |. .|.+.+++...|+++++..+ |.....++
T Consensus 184 K~L~DVT~~EF~L~m~lL~~lkl~~t~-~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv 262 (507)
T 3u0r_A 184 KVLEDVTGEEFVLFMKILSGLKSLQTV-SGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFV 262 (507)
T ss_dssp HHTTSCCHHHHHHHHHHHHTSGGGSSH-HHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHH
T ss_pred HHhccccHHHHHHHHHHHHhcccccCc-hHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHH
Confidence 0000 00111222222222211111 2235666666665432 33 58889999999999887654 33334455
Q ss_pred HHHHHHHHHHHhhcCCc-----chhHhHHHHHHH---hCCCccchHHHHHHHHHHHHHHHHhhcCc-cc-------CCCC
Q 002148 701 GAILEEIQGLYQQHQQP-----CFLYLSSEVIKI---FGSDPSCASYLHNLIEALFKRTTCLLTSI-EE-------FTSR 764 (959)
Q Consensus 701 ~~l~~~l~~~~~~~~~~-----~~L~l~~~li~~---~~~~~~~~~~l~~~~~~l~~~~~~~l~~~-~~-------~~~~ 764 (959)
.-+++.++-.+..-..+ .=|+++..+.+. .|..+...+.+ ..+...-...+-.. .+ .++.
T Consensus 263 ~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l----~~iy~~L~~ymP~~p~~~~~~~~~~~~~ 338 (507)
T 3u0r_A 263 TYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNL----RKLFDKLLEYMPLPPEEAENGENAGNEE 338 (507)
T ss_dssp HHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHH----HHHHHHHHTTSCCCC-------------
T ss_pred HHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHH----HHHHHHHHHHCCCCcccccccccccccC
Confidence 55555555545543222 235555555554 33222222233 33332222222210 10 0123
Q ss_pred CC----cHHHHHHHHHHHHhhCCCccc
Q 002148 765 PD----VADDCFLLASRCIRYCPQLFI 787 (959)
Q Consensus 765 pD----l~~~~f~l~~~~~~~~p~~~l 787 (959)
|+ .++.++-.++++.+++|..+.
T Consensus 339 p~l~fS~vECLLy~fH~L~~k~P~~l~ 365 (507)
T 3u0r_A 339 PKLQFSYVECLLYSFHQLGRKLPDFLT 365 (507)
T ss_dssp -CCCHHHHHHHHHHHHHHHTTCTHHHH
T ss_pred cccchhHHHHHHHHHHHHhhhChhhhc
Confidence 44 356666678888888888664
No 55
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=90.49 E-value=1 Score=43.87 Aligned_cols=138 Identities=15% Similarity=0.173 Sum_probs=83.3
Q ss_pred CCCcchhhHHHHHHHHhhcccCCc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhhhhHHhhCCCChhhH-HHHH
Q 002148 447 HNEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSIL-ASVL 520 (959)
Q Consensus 447 ~~~w~~~Ea~l~~l~~l~e~~~~~-----~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l-~~~l 520 (959)
+.++...+.++.+++.++..-+.. +...++.+++.+.. .++.++..++++++..+..-..+.. ..+ ...+
T Consensus 23 s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~--~i~~~g~i 98 (210)
T 4db6_A 23 SPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS--PNEQILQEALWALSNIASGGNEQIQ--AVIDAGAL 98 (210)
T ss_dssp CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSCHHHHH--HHHHTTCH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhcCCcHHHH--HHHHCCCH
Confidence 456788899999999998544322 12456666666654 3789999999999988631111100 000 1133
Q ss_pred HHHHhccCCCH-HHHHHHHHHHHHHHHHhhhhhhCCH-HHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhc
Q 002148 521 SILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYL-DGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 593 (959)
Q Consensus 521 ~~l~~~l~~~~-~v~~~A~~al~~lc~~c~~~L~~~~-~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~ 593 (959)
+.++..+.+++ .++..|+.++.++|........... ...+..+.+++.. -+.+.+...+.+++.+...
T Consensus 99 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-----~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 99 PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-----PNEQILQEALWALSNIASG 168 (210)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-----SCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcC-----CCHHHHHHHHHHHHHHHcC
Confidence 44444455442 4999999999999964332211101 1234444455543 2467788888899888875
No 56
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=89.28 E-value=4 Score=42.19 Aligned_cols=169 Identities=8% Similarity=0.144 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHHHhccCCCCCccc---ccchhHHHHH-hcC-CCCchHH-HHHHHHHHHHhhhccCCCCCCCCchhHHHH
Q 002148 194 LKEQVLEAFASWLRLKHRIPGSVL---ASHPLVLTAL-SSL-HSEILSE-ASVNVISELIHYSAAGSSGGATVNMPLIQV 267 (959)
Q Consensus 194 ~~~~~l~~~~sWi~~~~~~~~~~~---~~~~ll~~~~-~~L-~~~~~~~-~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~ 267 (959)
++..+|+-+..|++-.. ....+ ..+|+++.++ ..- +.|+.++ ..+.++..++.+-.... .+.-..++..
T Consensus 45 vKkeiLkLiet~i~~~~--d~~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i---~~~vp~Il~~ 119 (321)
T 1w9c_A 45 VKRETLKLISGWVSRSN--DPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHI---TAEIPQIFDA 119 (321)
T ss_dssp HHHHHHHHHHHHHTTCS--CHHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGG---GGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHh---hhhHHHHHHH
Confidence 56777888888887431 11111 1234554443 222 3456654 46788888887754221 0111223444
Q ss_pred HHHHHHhhHHHhhhc-CCCHHHHHHHHHHHHHhhhHHHHHHhcCC-chHHHHHHHHHhhccCCCcchhhhhHHhHHHhHH
Q 002148 268 IVPQIMSLKAHLTDS-SKDEEDVKAIARLFADMGDSYVELIATGS-DESMLIVHALLEVASHPEYDIASMTFNFWHSLQV 345 (959)
Q Consensus 268 l~~~v~~l~~~l~~~-~~d~e~~~~l~~l~~~~~~~~~~~l~~~~-~~~~~~l~~ll~~~~~~~~~v~~~~l~fW~~l~~ 345 (959)
+|..- .+.+... ++-+|....+.+++-++.......+.+=| +.+..+++.++....|++++|++..+.-...+.+
T Consensus 120 VFe~T---L~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~ 196 (321)
T 1w9c_A 120 VFECT---LNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQ 196 (321)
T ss_dssp HHHHH---HHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHH---HHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 44332 2233222 33357777888888888777555555533 4577889999999999999999999988877777
Q ss_pred HHhhcccccccCcccchHHHHHHHHhhhHHHHHHHHHHHH
Q 002148 346 ILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVS 385 (959)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~ 385 (959)
.+.+. + +...+.|+.+|..++.-++
T Consensus 197 n~~~~-------~--------~~~~~Fy~~fy~~il~~if 221 (321)
T 1w9c_A 197 NVAQE-------E--------AAAQSFYQTYFCDILQHIF 221 (321)
T ss_dssp HHHHC-------H--------HHHHHHHHHHHHHHHHHHH
T ss_pred HHhcC-------h--------HHHHHHHHHHHHHHHHHHH
Confidence 66421 0 1234566666666665444
No 57
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=88.67 E-value=4.7 Score=39.01 Aligned_cols=134 Identities=16% Similarity=0.175 Sum_probs=78.8
Q ss_pred CCCcchhhHHHHHHHHhhcccCCc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhhhhHHhhCCCChhhH-HHHH
Q 002148 447 HNEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSIL-ASVL 520 (959)
Q Consensus 447 ~~~w~~~Ea~l~~l~~l~e~~~~~-----~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l-~~~l 520 (959)
+.+..-.+.++++++.++..-+.. +...++.++..+.. .++.++..++++++..+..-..+-+ ..+ ..++
T Consensus 65 ~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~--~~~~~~~i 140 (210)
T 4db6_A 65 SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS--PNEQILQEALWALSNIASGGNEQIQ--AVIDAGAL 140 (210)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSCHHHHH--HHHHTTHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcC--CcHHHHHHHHHHHHHHHcCCHHHHH--HHHHcCcH
Confidence 346777899999999988543222 12456777776644 2689999999999998741111000 000 1233
Q ss_pred HHHHhccCCC-HHHHHHHHHHHHHHHHHhhh---hhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHH
Q 002148 521 SILTSGMSTS-EDTAAAAALAFRHICDDCRK---KLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVI 591 (959)
Q Consensus 521 ~~l~~~l~~~-~~v~~~A~~al~~lc~~c~~---~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi 591 (959)
+.+...+.++ .+++..|+.+|.++|..... .+.. ...+..+.+++.. -+.+.+.....+++.+.
T Consensus 141 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~--~g~i~~L~~ll~~-----~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 141 PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKE--AGALEKLEQLQSH-----ENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHH--TTHHHHHHHGGGC-----SCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHH--CCCHHHHHHHHhC-----CCHHHHHHHHHHHHHHh
Confidence 4444444443 24999999999999964322 2211 1244444555543 24566777777776553
No 58
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=88.41 E-value=62 Score=40.77 Aligned_cols=151 Identities=15% Similarity=0.131 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHhhCCCcccCc----CChHHHHHHHHHhccCCCchhHHHHHHHHHHhhcCcCCCCchhhHHHHHHHHhhc
Q 002148 769 DDCFLLASRCIRYCPQLFIPS----SVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLAKSCKGEEFLSVRDSVIIPR 844 (959)
Q Consensus 769 ~~~f~l~~~~~~~~p~~~l~s----~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~ 844 (959)
++-+.++..+++.+....-.+ ..+..+++. +..+...++.....++..|..+..|.. ..+++
T Consensus 504 ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~-ll~~~~~~p~l~~~~i~~l~~l~~~~~--~~p~~----------- 569 (1204)
T 3a6p_A 504 EAMTLFLESVITQMFRTLNREEIPVNDGIELLQM-VLNFDTKDPLILSCVLTNVSALFPFVT--YRPEF----------- 569 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHH-HHHCCCSCHHHHHHHHHHHHHHGGGGG--TCGGG-----------
T ss_pred HHHHHHHHHHHHHHhcccccccccHHHHHHHHHH-HHhCCCCChHHHHHHHHHHHHHHHHHh--cCchH-----------
Confidence 445556666665432111111 123445554 222334566666677788877777632 12333
Q ss_pred cHHHHHHHHHHcccCCC-----------CCCcccHHHHHHHHHHHhhHHHHHHHHHHHh----hCCCCC-CCHHHHHHHH
Q 002148 845 GASITRILIASLTGALP-----------SSRLETVTYALLALTRAYGVRSLEWAKESVS----LIPLTA-LAEVERSRFL 908 (959)
Q Consensus 845 g~~lv~~ll~~l~~~~~-----------~~~~~~~a~il~~l~~~~~~~~~~wl~~~l~----~~p~~~-~~~~~~~~f~ 908 (959)
.+.++..++.++.+..+ +......+..|..+...+|+.+..++.+..+ .+...+ ++..++-.+.
T Consensus 570 L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~ 649 (1204)
T 3a6p_A 570 LPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALM 649 (1204)
T ss_dssp HHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHH
T ss_pred HHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHH
Confidence 22334455656543222 1233456778888999988777666654442 233345 7788888887
Q ss_pred HHHHHHhcC-CCchhhhHHHHHHHHH
Q 002148 909 QALSEAASG-VDVNAAMAPVEELSDV 933 (959)
Q Consensus 909 ~~l~~~~~~-~~~~~f~~~l~~F~~~ 933 (959)
..+...... .+..+-.+.++.|+.-
T Consensus 650 eal~~ia~~~~~~~~~~~~l~~ll~P 675 (1204)
T 3a6p_A 650 EALVLISNQFKNYERQKVFLEELMAP 675 (1204)
T ss_dssp HHHHHHHGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 776654221 2333334445555543
No 59
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=87.63 E-value=7.9 Score=38.60 Aligned_cols=216 Identities=12% Similarity=0.083 Sum_probs=109.5
Q ss_pred CCcchhhHHHHHHHHhhcccCCc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhhhhHHhhCCCChhhH-HHHHH
Q 002148 448 NEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSIL-ASVLS 521 (959)
Q Consensus 448 ~~w~~~Ea~l~~l~~l~e~~~~~-----~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l-~~~l~ 521 (959)
.+......++.++..+...-.+. +...++.+++.+.. .++.++..++++++.++.--..+.. ..+ ...++
T Consensus 24 ~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~--~i~~~g~i~ 99 (252)
T 4db8_A 24 DDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSS--PNEQILQEALWALSNIASGGNEQIQ--AVIDAGALP 99 (252)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGC--SCHHHHHHHHHHHHHHTTSCHHHHH--HHHHTTHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcC--CCHHHHHHHHHHHHHHhcCCHHHHH--HHHHcCCHH
Confidence 34455667777775433321111 12456666666654 2588999999999988742111100 011 12445
Q ss_pred HHHhccCCC-HHHHHHHHHHHHHHHHHhhhhhhCC-HHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCChHHH
Q 002148 522 ILTSGMSTS-EDTAAAAALAFRHICDDCRKKLCGY-LDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDA 599 (959)
Q Consensus 522 ~l~~~l~~~-~~v~~~A~~al~~lc~~c~~~L~~~-~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~ 599 (959)
.+...+.++ ..++..|+.+|.+++.......... -...+..+.+++.. -+.+.+.....+++.+...-+ +..
T Consensus 100 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-----~~~~v~~~a~~~L~~l~~~~~-~~~ 173 (252)
T 4db8_A 100 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-----PNEQILQEALWALSNIASGGN-EQI 173 (252)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC-----SCHHHHHHHHHHHHHHTTSCH-HHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhC-----CCHHHHHHHHHHHHHHHcCCh-HHH
Confidence 555555544 2499999999999986543221100 11234444455543 246678888888888776532 222
Q ss_pred HHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCCcccHHHHHH-HHhHHHHHHHHhhcccHHHH
Q 002148 600 KKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQ-RLWPIFKAIFDIRAWDMRTM 678 (959)
Q Consensus 600 ~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~-~~~~~l~~il~~~~~~~~i~ 678 (959)
....+ ...+..+-.++.... ..-....+..|+.+... .++....+.+ ..+|.+..++. ..++++.
T Consensus 174 ~~~~~---~~~i~~L~~ll~~~~-------~~v~~~a~~~L~~l~~~--~~~~~~~~~~~g~i~~L~~ll~--~~~~~v~ 239 (252)
T 4db8_A 174 QAVID---AGALPALVQLLSSPN-------EQILQEALWALSNIASG--GNEQKQAVKEAGALEKLEQLQS--HENEKIQ 239 (252)
T ss_dssp HHHHH---TTCHHHHHHGGGCSS-------HHHHHHHHHHHHHHTTS--CHHHHHHHHHTTHHHHHHTTTT--CSSSHHH
T ss_pred HHHHH---CCCHHHHHHHHCCCC-------HHHHHHHHHHHHHHhcC--CHHHHHHHHHCCcHHHHHHHhC--CCCHHHH
Confidence 22111 233344444444321 11122345566665532 1221112222 24444444443 2456788
Q ss_pred HHHHHHHHH
Q 002148 679 ESLCRACKY 687 (959)
Q Consensus 679 e~~~~~l~~ 687 (959)
+.++.++..
T Consensus 240 ~~A~~~L~~ 248 (252)
T 4db8_A 240 KEAQEALEK 248 (252)
T ss_dssp HTHHHHHHT
T ss_pred HHHHHHHHH
Confidence 888877764
No 60
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=87.50 E-value=26 Score=35.42 Aligned_cols=213 Identities=12% Similarity=0.046 Sum_probs=119.6
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHhcChhhHHHHHHHhccCCCChhHHHHHHHHHHhhhhcCCCCCChhhHHHHHHH
Q 002148 7 VKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDS 86 (959)
Q Consensus 7 v~~av~~l~~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~~~faa~~L~~ki~~~w~~l~~~~~~~lr~~ 86 (959)
+...+..| .++|+..|..|-..|.++. ++++......+|.+ .+..+|..|+..|... .. +.+....+-..
T Consensus 25 i~~L~~~L-~~~~~~vr~~A~~~L~~~~-~~~~~~~L~~~l~d--~~~~vR~~A~~aL~~l-~~-----~~~~~~~l~~~ 94 (280)
T 1oyz_A 25 DDELFRLL-DDHNSLKRISSARVLQLRG-GQDAVRLAIEFCSD--KNYIRRDIGAFILGQI-KI-----CKKCEDNVFNI 94 (280)
T ss_dssp HHHHHHHT-TCSSHHHHHHHHHHHHHHC-CHHHHHHHHHHHTC--SSHHHHHHHHHHHHHS-CC-----CTTTHHHHHHH
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHccC-CchHHHHHHHHHcC--CCHHHHHHHHHHHHHh-cc-----ccccchHHHHH
Confidence 33444444 5779999999999999887 78899999999975 5678999999888643 11 11222222222
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCC-CchhhHHHHhcccccc-cccc---cc-
Q 002148 87 LNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHP-EFVPGFLELLTVLPEE-VFNY---KI- 160 (959)
Q Consensus 87 Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l~~~l~~~~-~~~~~~L~~L~~l~EE-~~~~---~~- 160 (959)
|.+.+.+ .....||...+.+|+.+....+. ..+. .++.+...+.... .........|..+..+ .... .+
T Consensus 95 L~~~~~~--d~~~~vr~~a~~aL~~l~~~~~~-~~~~--~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~ 169 (280)
T 1oyz_A 95 LNNMALN--DKSACVRATAIESTAQRCKKNPI-YSPK--IVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLK 169 (280)
T ss_dssp HHHHHHH--CSCHHHHHHHHHHHHHHHHHCGG-GHHH--HHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHHHHHT
T ss_pred HHHHHhc--CCCHHHHHHHHHHHHHHhccCCc-ccHH--HHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHc
Confidence 3222222 35677999999999888754321 1222 5566666665432 1222334444333321 0000 00
Q ss_pred cCChhHHHHHHHHHHHh---HHHHHHHHHHhhhhh--HhHHHHHHHHHHHHhccCCCCCcccccchhHHHHHhcCCCCch
Q 002148 161 AARPERRRQFEKELTSQ---MEVALSTLTACLHIN--ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEIL 235 (959)
Q Consensus 161 ~l~~~~r~~l~~~l~~~---~~~vl~~l~~~l~~~--~~~~~~l~~~~sWi~~~~~~~~~~~~~~~ll~~~~~~L~~~~~ 235 (959)
.-...-|...-..+... .+.++..+...+.++ .++..++.++...- ....++.+...+.++++
T Consensus 170 d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~------------~~~~~~~L~~~l~d~~v 237 (280)
T 1oyz_A 170 DPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK------------DKRVLSVLCDELKKNTV 237 (280)
T ss_dssp CSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT------------CGGGHHHHHHHHTSSSC
T ss_pred CCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC------------CHhhHHHHHHHhcCccH
Confidence 00122233222333222 455666666666553 56777777665321 23466677777777888
Q ss_pred HHHHHHHHHHH
Q 002148 236 SEASVNVISEL 246 (959)
Q Consensus 236 ~~~a~~~l~~i 246 (959)
+..|++++..+
T Consensus 238 r~~a~~aL~~i 248 (280)
T 1oyz_A 238 YDDIIEAAGEL 248 (280)
T ss_dssp CHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 88888777655
No 61
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=86.67 E-value=2 Score=43.25 Aligned_cols=133 Identities=17% Similarity=0.188 Sum_probs=82.3
Q ss_pred CCcchhhHHHHHHHHhhcccCCcc-----ccchHHHhhhccCCCCcHHHHHHHHHHHHhhhhHHhhCCCChhhH-HHHHH
Q 002148 448 NEWRPAEAALFCIRAISTYVSVVE-----AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSIL-ASVLS 521 (959)
Q Consensus 448 ~~w~~~Ea~l~~l~~l~e~~~~~~-----~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l-~~~l~ 521 (959)
.+..-.+.++.+++.++..-+... ...++.++..+.. .++.++..++++++..+..-..... ... ..+++
T Consensus 66 ~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~--~~~~~~~i~ 141 (252)
T 4db8_A 66 PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS--PNEQILQEALWALSNIASGGNEQIQ--AVIDAGALP 141 (252)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC--SCHHHHHHHHHHHHHHTTSCHHHHH--HHHHTTHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHHhhcCCchHHH--HHHHCCCHH
Confidence 346677889999998886543221 2356667776655 3789999999999988642111100 011 12445
Q ss_pred HHHhccCCCH-HHHHHHHHHHHHHHHHhh---hhhh--CCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhc
Q 002148 522 ILTSGMSTSE-DTAAAAALAFRHICDDCR---KKLC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 593 (959)
Q Consensus 522 ~l~~~l~~~~-~v~~~A~~al~~lc~~c~---~~L~--~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~ 593 (959)
.+.+.+.+++ .++..|+.+|.+++.... ..+. ..++.++ +++.. -+.+.+...+.+++.+...
T Consensus 142 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~----~ll~~-----~~~~v~~~a~~~L~~l~~~ 210 (252)
T 4db8_A 142 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV----QLLSS-----PNEQILQEALWALSNIASG 210 (252)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHH----HGGGC-----SSHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHH----HHHCC-----CCHHHHHHHHHHHHHHhcC
Confidence 5555555442 499999999999996332 2222 3344444 44443 2467788888888888754
No 62
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=85.80 E-value=2.6 Score=43.74 Aligned_cols=136 Identities=13% Similarity=0.120 Sum_probs=81.8
Q ss_pred CCcchhhHHHHHHHHhhcccCCc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhhhhHHhhCCCC---hhhHHHH
Q 002148 448 NEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSD---PSILASV 519 (959)
Q Consensus 448 ~~w~~~Ea~l~~l~~l~e~~~~~-----~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~---~~~l~~~ 519 (959)
++-.-.+.++++++.++..-+.. +...++.++..+..- .++.++..++++|+..+.-....++. ...++.+
T Consensus 94 ~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~-~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L 172 (296)
T 1xqr_A 94 GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRD-ACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVL 172 (296)
T ss_dssp SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccC-CCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHH
Confidence 44566789999999988653321 124567777776542 25789999999999876311110000 0134444
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHhh---hhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcC
Q 002148 520 LSILTSGMSTSEDTAAAAALAFRHICDDCR---KKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITEL 594 (959)
Q Consensus 520 l~~l~~~l~~~~~v~~~A~~al~~lc~~c~---~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~ 594 (959)
+..+-. .++ +++..|+.++.++|.... ..+.. ...+..+..++.. -+.+.+.....+++.++...
T Consensus 173 ~~lL~~--~d~-~v~~~A~~aLs~L~~~~~~~~~~vv~--~g~i~~Lv~LL~~-----~d~~v~~~al~aL~~l~~~~ 240 (296)
T 1xqr_A 173 MRAMQQ--QVQ-KLKVKSAFLLQNLLVGHPEHKGTLCS--MGMVQQLVALVRT-----EHSPFHEHVLGALCSLVTDF 240 (296)
T ss_dssp HHHHHS--SCH-HHHHHHHHHHHHHHHHCGGGHHHHHH--TTHHHHHHHHHTS-----CCSTHHHHHHHHHHHHHTTC
T ss_pred HHHHcC--CCH-HHHHHHHHHHHHHHhCChHHHHHHHH--cCCHHHHHHHHcC-----CChhHHHHHHHHHHHHHhCC
Confidence 444322 223 499999999999997632 22221 1233333344543 24567889999999998773
No 63
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=85.53 E-value=14 Score=36.56 Aligned_cols=221 Identities=15% Similarity=0.109 Sum_probs=127.8
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHhcCh----------hhHHHHHHHhccCCCChhHHHHHHHHHHhhhhcCCCCCC
Q 002148 7 VKEALNALYHHPDDAVRMQADRWLQDFQHTI----------DAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELP 76 (959)
Q Consensus 7 v~~av~~l~~~~d~~~r~~A~~~L~~~q~s~----------~aw~~~~~lL~~~~~~~~~~~faa~~L~~ki~~~w~~l~ 76 (959)
|...+..+ .+++++.|.+|-..|..+-... ++......+|.+ .+.+++..|+..|.+-...+
T Consensus 4 i~~L~~~L-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~----- 75 (252)
T 4hxt_A 4 VEKLVKLL-TSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS--TDSEVQKEAARALANIASGP----- 75 (252)
T ss_dssp HHHHHHHT-TCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSC-----
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHHHcCC-----
Confidence 34444444 4667889999999998886543 356666777764 45789999999998776531
Q ss_pred hhhHHH-HHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHhhccccccCC---ccchHHHHHhcCCCC-CchhhHHHHhcc
Q 002148 77 SEAVRG-LQDSLNTLLKKFH-KGPPKVRTQISIAVAALAVHISAEDWGG---GGIVNWLRDEMNSHP-EFVPGFLELLTV 150 (959)
Q Consensus 77 ~~~~~~-lr~~Ll~~l~~~~-~~~~~v~~kL~~~la~l~~~~~~~~Wp~---~~~~~~l~~~l~~~~-~~~~~~L~~L~~ 150 (959)
++.+.. ++...+..+.... .++..++...+.+|+.+...... .... .+.++.+++.+.+.. ......+..|..
T Consensus 76 ~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~ 154 (252)
T 4hxt_A 76 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE-AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALAN 154 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH-HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 333332 2333455555532 35677888899999888753221 1110 025666777776443 233455666666
Q ss_pred cccccccccccCChhHHHHHHHHHHHhHHHHHHHHHHhhhh--hHhHHHHHHHHHHHHhccCCCCCcccccchhHHHHHh
Q 002148 151 LPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHI--NELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALS 228 (959)
Q Consensus 151 l~EE~~~~~~~l~~~~r~~l~~~l~~~~~~vl~~l~~~l~~--~~~~~~~l~~~~sWi~~~~~~~~~~~~~~~ll~~~~~ 228 (959)
+...- +..+..+.+ ..++..+...+.+ +.++..++.++..-....+. ....+.....++.+..
T Consensus 155 l~~~~--------~~~~~~~~~------~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~l~~~~~i~~L~~ 219 (252)
T 4hxt_A 155 IASGP--------DEAIKAIVD------AGGVEVLVKLLTSTDSEVQKEAARALANIASGPTS-AIKAIVDAGGVEVLQK 219 (252)
T ss_dssp HTTSC--------HHHHHHHHH------TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHH-HHHHHHHTTHHHHHHH
T ss_pred HHcCC--------HHHHHHHHH------CcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHH-HHHHHHHCCCHHHHHH
Confidence 54421 111111111 1233344444444 35777888887765541100 0001234567777777
Q ss_pred cCCCC--chHHHHHHHHHHHHhhhc
Q 002148 229 SLHSE--ILSEASVNVISELIHYSA 251 (959)
Q Consensus 229 ~L~~~--~~~~~a~~~l~~ii~~~~ 251 (959)
.+.++ +++..|+.+|..+.....
T Consensus 220 ll~~~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 220 LLTSTDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHTCB
T ss_pred HHCCCcHHHHHHHHHHHHHHHcCCC
Confidence 77644 678889999998887654
No 64
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=85.50 E-value=4.7 Score=48.82 Aligned_cols=198 Identities=15% Similarity=0.250 Sum_probs=124.5
Q ss_pred hHHHHHHHHHHHHhhccCCCCCCCCChhhhHHHHHHHHHhhHHHHHhhhccChHHHHHHHHHHHHHhhhhcCCCCCCcch
Q 002148 373 FRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRP 452 (959)
Q Consensus 373 ~~~~~~~Ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~d~l~~~~~il~~~~~l~~l~~~l~~~~~~~~~~~~~w~~ 452 (959)
..|++..++..++..+. | .+ ...|.........++..+.+..+ ..+.+.|...+.+ ...||.
T Consensus 89 ~e~~~~~~~~~~~~~~~---d-----k~-----~~v~~aa~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~----~~kw~~ 150 (986)
T 2iw3_A 89 VEPYIVQLVPAICTNAG---N-----KD-----KEIQSVASETLISIVNAVNPVAI-KALLPHLTNAIVE----TNKWQE 150 (986)
T ss_dssp THHHHHTTHHHHHHHTT---C-----SS-----HHHHHHHHHHHHHHHHHSCGGGH-HHHHHHHHHHHHH----CCCHHH
T ss_pred cccchHHHHHHHHHHhc---C-----Cc-----hHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHhcc----ccchHH
Confidence 46777777777766431 1 11 13455555566666666776543 4455555555432 346999
Q ss_pred hhHHHHHHHHhhcccCCccccchHHHhhhccC-C-CCcHHHHHHHHHHHHhhhhHHhh---------------CCCC---
Q 002148 453 AEAALFCIRAISTYVSVVEAEVMPQVMALLPK-L-PQQPQLLQTVCLTIGAYSKWFDA---------------ASSD--- 512 (959)
Q Consensus 453 ~Ea~l~~l~~l~e~~~~~~~~~l~~l~~~l~~-l-p~~~~v~~t~~~~ig~y~~~l~~---------------~p~~--- 512 (959)
..++|-++..+++..+..-...+|.++..+.. + ...+.|..++..++.+++.-+.+ +|+.
T Consensus 151 k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~~~~~ 230 (986)
T 2iw3_A 151 KIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPTEVPE 230 (986)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTTHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcChhhhHH
Confidence 99999999999998754334567777777754 2 34677877777777777654443 3330
Q ss_pred ---------------hhhHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhh--hhhhCCHHHHHHHHHHHhhccCCCC
Q 002148 513 ---------------PSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCR--KKLCGYLDGLYNVYRTAVNGEGSLK 574 (959)
Q Consensus 513 ---------------~~~l~~~l~~l~~~l~~~~-~v~~~A~~al~~lc~~c~--~~L~~~~~~ll~~~~~~~~~~~~~~ 574 (959)
...|.-+.+.+.+++.... .+.+.++.-+.++|+-.. ....||++.++.-+..+..+ -
T Consensus 231 ~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~----~ 306 (986)
T 2iw3_A 231 TVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFAT----I 306 (986)
T ss_dssp HHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTT----C
T ss_pred HHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhc----c
Confidence 0123334455566766542 367888888888887443 45668888888888877654 2
Q ss_pred CCHhhHHHHHHHHHHHHh
Q 002148 575 VSAEDSLHLVEALSMVIT 592 (959)
Q Consensus 575 l~~~~~~~l~eai~~vi~ 592 (959)
-.++.|...-.|+..+..
T Consensus 307 ~~pe~r~~~~~a~~~l~~ 324 (986)
T 2iw3_A 307 ADPEAREVTLRALKTLRR 324 (986)
T ss_dssp CSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 356777766666665543
No 65
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=84.96 E-value=12 Score=35.69 Aligned_cols=109 Identities=14% Similarity=0.158 Sum_probs=71.4
Q ss_pred CCCcchhhHHHHHHHHhhcccCCccccchHHHhhhccCCCCcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhc
Q 002148 447 HNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSG 526 (959)
Q Consensus 447 ~~~w~~~Ea~l~~l~~l~e~~~~~~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~ 526 (959)
+.+|.....++.+++.++. ...++.++..+.. .++.+|..+++.+|++. +++ .++.++ ..
T Consensus 56 ~~~~~vr~~a~~~L~~~~~------~~~~~~L~~~l~d--~~~~vr~~a~~aL~~~~-----~~~---~~~~L~----~~ 115 (201)
T 3ltj_A 56 DEDAWVRRAAADALGQIGD------ERAVEPLIKALKD--EDGWVRQSAAVALGQIG-----DER---AVEPLI----KA 115 (201)
T ss_dssp CSSHHHHHHHHHHHHHHCC------GGGHHHHHHHTTC--SSHHHHHHHHHHHHHHC-----CGG---GHHHHH----HH
T ss_pred CCCHHHHHHHHHHHHhhCC------HHHHHHHHHHHcC--CCHHHHHHHHHHHHHhC-----cHH---HHHHHH----HH
Confidence 4567778888888887753 2456667766643 47899999999999864 232 444444 34
Q ss_pred cCCCH-HHHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHH
Q 002148 527 MSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMV 590 (959)
Q Consensus 527 l~~~~-~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~v 590 (959)
+.+++ .++..|+.++.++... ..+..+..++.. -+...|...+++++.+
T Consensus 116 l~d~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~d-----~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 116 LKDEDWFVRIAAAFALGEIGDE----------RAVEPLIKALKD-----EDGWVRQSAADALGEI 165 (201)
T ss_dssp TTCSSHHHHHHHHHHHHHHTCG----------GGHHHHHHHTTC-----SSHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHhCCH----------HHHHHHHHHHcC-----CCHHHHHHHHHHHHHh
Confidence 45543 4899999999887431 122333444432 2467888888888876
No 66
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=84.46 E-value=66 Score=37.23 Aligned_cols=304 Identities=13% Similarity=0.090 Sum_probs=154.9
Q ss_pred chhHHHHHhcCCC--CchHHHHHHHHHHHHhhhccCCCCCCCCchhHH--HHHHHHHHhhHHHhhhcCCCHHHHHHHHHH
Q 002148 220 HPLVLTALSSLHS--EILSEASVNVISELIHYSAAGSSGGATVNMPLI--QVIVPQIMSLKAHLTDSSKDEEDVKAIARL 295 (959)
Q Consensus 220 ~~ll~~~~~~L~~--~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~--~~l~~~v~~l~~~l~~~~~d~e~~~~l~~l 295 (959)
...++.+...|.+ +.++..|+.+|..+..... ....++ ...++.++ ..+. ...+.+.....+..
T Consensus 13 ~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~--------~~~~i~~~~~~i~~Lv---~~L~-~~~~~~~~~~A~~~ 80 (644)
T 2z6h_A 13 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA--------SRHAIMRSPQMVSAIV---RTMQ-NTNDVETARCTAGT 80 (644)
T ss_dssp TTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTT--------HHHHHTTCHHHHHHHH---HHHH-SCCCHHHHHHHHHH
T ss_pred hchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCh--------hHHHHHhccChHHHHH---HHHh-cCCCHHHHHHHHHH
Confidence 3456666666654 4678899999988875432 111111 11222222 2222 22355554455555
Q ss_pred HHHhhhHH--HHHHhcCCchHHHHHHHHHhhccCCCcchhhhhHHhHHHhHHHHhhcccccccCcccchHHHHHHHHhhh
Q 002148 296 FADMGDSY--VELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVF 373 (959)
Q Consensus 296 ~~~~~~~~--~~~l~~~~~~~~~~l~~ll~~~~~~~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (959)
+..+.... ...+.+. ..++.++.+...++.++...+..-...+...-. + .+....
T Consensus 81 L~~Ls~~~~~~~~i~~~-----g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~----------~--------~~~~v~ 137 (644)
T 2z6h_A 81 LHNLSHHREGLLAIFKS-----GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE----------G--------AKMAVR 137 (644)
T ss_dssp HHHHTTSHHHHHHHHTT-----THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHST----------T--------HHHHHH
T ss_pred HHHHhcChhhHHHHHHc-----CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcc----------h--------hHHHHH
Confidence 55554332 1122211 356777777778877777766665544443210 0 010111
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCChhhhHHHHHHHHHhhHHHHHhhhccC-------hHHHHHHHHHHHHHhhhhcCCC
Q 002148 374 RSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYAVADVLIDAASVLG-------GDATLKILYIKFVEGVACCGNK 446 (959)
Q Consensus 374 ~~~~~~Ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~d~l~~~~~il~-------~~~~l~~l~~~l~~~~~~~~~~ 446 (959)
. ...++.++.-+.-+ +. +.|....+++..++.--+ ....+..+ .+.+..
T Consensus 138 ~---~g~i~~Lv~lL~~~------~~-------~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~L----v~lL~~---- 193 (644)
T 2z6h_A 138 L---AGGLQKMVALLNKT------NV-------KFLAITTDCLQILAYGNQESKLIILASGGPQAL----VNIMRT---- 193 (644)
T ss_dssp H---TTHHHHHHHGGGCC------CH-------HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH----HHHHTT----
T ss_pred H---CCChHHHHHHHCcC------CH-------HHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHH----HHHHHc----
Confidence 0 11233333333222 11 133333444544432100 01122223 333221
Q ss_pred CCCcchhhHHHHHHHHhhcccCCcc-----ccchHHHhhhccCCCCcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHH
Q 002148 447 HNEWRPAEAALFCIRAISTYVSVVE-----AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLS 521 (959)
Q Consensus 447 ~~~w~~~Ea~l~~l~~l~e~~~~~~-----~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~ 521 (959)
.......+.++.++..++..- ... ...++.++..+.. .++.++..++++++..+..-... . ....+++
T Consensus 194 ~~~~~~~~~a~~~L~nLs~~~-~~~~~l~~~g~l~~L~~ll~~--~~~~~~~~a~~~L~nL~~~~~~~-~---~~~~~i~ 266 (644)
T 2z6h_A 194 YTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHLTD--PSQRLVQNCLWTLRNLSDAATKQ-E---GMEGLLG 266 (644)
T ss_dssp CCCHHHHHHHHHHHHHHTTCT-THHHHHHHTTHHHHHHTTTTC--SCHHHHHHHHHHHHHHGGGCTTC-C---SCHHHHH
T ss_pred CChHHHHHHHHHHHHHHhcCc-ccHHHHHHCCCHHHHHHHHhc--CCHHHHHHHHHHHHHHhhcchhh-h---hhhhHHH
Confidence 233455678888888887522 211 1334555554433 36889999999999987643222 2 3456666
Q ss_pred HHHhccCCC-HHHHHHHHHHHHHHHHH---hhhhhh--CCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCC
Q 002148 522 ILTSGMSTS-EDTAAAAALAFRHICDD---CRKKLC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELP 595 (959)
Q Consensus 522 ~l~~~l~~~-~~v~~~A~~al~~lc~~---c~~~L~--~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p 595 (959)
.+...+.+. .+++..|+.+|.++|.. .+..+. .-++.++..+...- -..+.+...+.+++.+...-+
T Consensus 267 ~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~-------~~~~v~~~a~~aL~nL~~~~~ 339 (644)
T 2z6h_A 267 TLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG-------DREDITEPAICALRHLTSRHQ 339 (644)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHHTSSST
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccC-------CcHHHHHHHHHHHHHHhcCCc
Confidence 666666654 24999999999999863 233333 22445554443311 124677888889988876555
Q ss_pred h
Q 002148 596 Q 596 (959)
Q Consensus 596 ~ 596 (959)
.
T Consensus 340 ~ 340 (644)
T 2z6h_A 340 E 340 (644)
T ss_dssp T
T ss_pred h
Confidence 4
No 67
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=83.87 E-value=78 Score=37.64 Aligned_cols=135 Identities=7% Similarity=0.022 Sum_probs=74.1
Q ss_pred CCcchhhHHHHHHHHhhcccCCc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHH
Q 002148 448 NEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSI 522 (959)
Q Consensus 448 ~~w~~~Ea~l~~l~~l~e~~~~~-----~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~ 522 (959)
.+..-.|.++.+++.++..-... ....++.++..+..- .++.++..++..+...+.--...... .-..+++.
T Consensus 162 ~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~-~d~~vr~~Aa~aL~~Ls~~~~~~~~i--~~~g~I~~ 238 (780)
T 2z6g_A 162 EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT-NDVETARCTSGTLHNLSHHREGLLAI--FKSGGIPA 238 (780)
T ss_dssp SCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHTSHHHHHHH--HHTTHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCC-CCHHHHHHHHHHHHHHhCCchhHHHH--HHcCCHHH
Confidence 34566888999999888643211 113456666655432 37889999999888765421110000 00123344
Q ss_pred HHhccCCC-HHHHHHHHHHHHHHHHHhh---hhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHh
Q 002148 523 LTSGMSTS-EDTAAAAALAFRHICDDCR---KKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVIT 592 (959)
Q Consensus 523 l~~~l~~~-~~v~~~A~~al~~lc~~c~---~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~ 592 (959)
++..+.++ ..++..|+.+|.++|.... ..+.. ...+..+..++.. -+.+.+.....++..+..
T Consensus 239 Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~--~g~v~~Lv~lL~~-----~~~~v~~~a~~aL~~La~ 305 (780)
T 2z6g_A 239 LVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRL--AGGLQKMVALLNK-----TNVKFLAITTDCLQILAY 305 (780)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHH--TTHHHHHHHGGGC-----CCHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHH--cCCHHHHHHHHhc-----CCHHHHHHHHHHHHHHhc
Confidence 44444443 2499999999999997632 22210 1233444444542 123445556666664443
No 68
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=81.59 E-value=18 Score=34.81 Aligned_cols=109 Identities=14% Similarity=0.160 Sum_probs=71.0
Q ss_pred CCCcchhhHHHHHHHHhhcccCCccccchHHHhhhccCCCCcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhc
Q 002148 447 HNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSG 526 (959)
Q Consensus 447 ~~~w~~~Ea~l~~l~~l~e~~~~~~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~ 526 (959)
+.+|.-...++.+++.++. ...++.++..+.. .++.+|..++..+|++.. ++ .++.++ ..
T Consensus 61 ~~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~~--~~~~vr~~a~~aL~~~~~-----~~---~~~~L~----~~ 120 (211)
T 3ltm_A 61 DEDAWVRRAAADALGQIGD------ERAVEPLIKALKD--EDGWVRQSAAVALGQIGD-----ER---AVEPLI----KA 120 (211)
T ss_dssp CSCHHHHHHHHHHHHHHCC------GGGHHHHHHHTTC--SSHHHHHHHHHHHHHHCC-----GG---GHHHHH----HH
T ss_pred CCCHHHHHHHHHHHHhhCC------HHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCc-----HH---HHHHHH----HH
Confidence 4567778888888887763 2356666666543 478999999999998742 32 444444 44
Q ss_pred cCCCH-HHHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHH
Q 002148 527 MSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMV 590 (959)
Q Consensus 527 l~~~~-~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~v 590 (959)
+.+++ .++..|+.++.++... ..+..+..++.. -+...|....++++.+
T Consensus 121 l~d~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~d-----~~~~vr~~a~~aL~~~ 170 (211)
T 3ltm_A 121 LKDEDWFVRIAAAFALGEIGDE----------RAVEPLIKALKD-----EDGWVRQSAADALGEI 170 (211)
T ss_dssp TTCSSHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTC-----SSHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHcC-----CCHHHHHHHHHHHHHh
Confidence 45543 4899999999887431 123333344432 2467788888888866
No 69
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=78.91 E-value=86 Score=34.87 Aligned_cols=335 Identities=6% Similarity=0.000 Sum_probs=154.3
Q ss_pred CCcchhhHHHHHHHHhhcccCCc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhhhhHHhhCCCChhhH--HHHH
Q 002148 448 NEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSIL--ASVL 520 (959)
Q Consensus 448 ~~w~~~Ea~l~~l~~l~e~~~~~-----~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l--~~~l 520 (959)
.+....+.++.+++.++..-... ....++.+++.+.+- .++.++..++..++..+.- ++....+ ...+
T Consensus 29 ~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~-~~~~~~~~a~~~L~~ls~~----~~~~~~i~~~g~i 103 (529)
T 1jdh_A 29 EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT-NDVETARCTAGTLHNLSHH----REGLLAIFKSGGI 103 (529)
T ss_dssp SCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTS----HHHHHHHHHTTHH
T ss_pred CCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcC-CCHHHHHHHHHHHHHHHcC----chhHHHHHHcCCH
Confidence 45666788888888887643211 113456666655432 3688899999998886542 1100000 1133
Q ss_pred HHHHhccCCC-HHHHHHHHHHHHHHHHHhh---hhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCCh
Q 002148 521 SILTSGMSTS-EDTAAAAALAFRHICDDCR---KKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQ 596 (959)
Q Consensus 521 ~~l~~~l~~~-~~v~~~A~~al~~lc~~c~---~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~ 596 (959)
+.+.+.+.++ ..++..|+.+|.++|.... ..+. -...+..+..++.. -+.+.+.....+++.+... .
T Consensus 104 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~--~~g~i~~L~~ll~~-----~~~~~~~~~~~~L~~la~~--~ 174 (529)
T 1jdh_A 104 PALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVR--LAGGLQKMVALLNK-----TNVKFLAITTDCLQILAYG--N 174 (529)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHH--HHTHHHHHHHGGGC-----CCHHHHHHHHHHHHHHHTT--C
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHH--HcCCHHHHHHHHhc-----CCHHHHHHHHHHHHHHHhC--C
Confidence 3444444443 2499999999999998632 2221 01233444444443 1344555666666655543 2
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCCcccHHHHH-HHHhHHHHHHHHhhcccH
Q 002148 597 VDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAI-QRLWPIFKAIFDIRAWDM 675 (959)
Q Consensus 597 ~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~il~~~~~~~ 675 (959)
++.+..+..- ..+..+-.++..... ..........+..+.. .++....+. ...+|.+..++.. .+.
T Consensus 175 ~~~~~~i~~~--~~i~~L~~ll~~~~~------~~~~~~a~~~L~~l~~---~~~~~~~~~~~g~~~~L~~ll~~--~~~ 241 (529)
T 1jdh_A 175 QESKLIILAS--GGPQALVNIMRTYTY------EKLLWTTSRVLKVLSV---CSSNKPAIVEAGGMQALGLHLTD--PSQ 241 (529)
T ss_dssp HHHHHHHHHT--THHHHHHHHHHHCCC------HHHHHHHHHHHHHHTT---STTHHHHHHHTTHHHHHHTTTTS--SCH
T ss_pred HHHHHHHHHC--CCHHHHHHHHHhCCh------HHHHHHHHHHHHHHhc---CcccHHHHHHCCCHHHHHHHHhC--CCh
Confidence 2222211110 112222333333211 1111112233333322 122111111 1334444333322 356
Q ss_pred HHHHHHHHHHHHHHHHhhh--hhhhhHHHHHHHHHHHHhhcCCcchhHhHHHHHHHhCCCccchHHHHHHHHH-HHHHHH
Q 002148 676 RTMESLCRACKYAVRTSKR--FMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEA-LFKRTT 752 (959)
Q Consensus 676 ~i~e~~~~~l~~~~~~~~~--~~~~~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~~~~~~~~~~~l~~~~~~-l~~~~~ 752 (959)
++.+.++.++..+.+.... .....+|.++..+ ....+.....+...+..+..... +....+... .+....
T Consensus 242 ~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll-----~~~~~~v~~~a~~~L~~L~~~~~--~~~~~~~~~~~v~~L~ 314 (529)
T 1jdh_A 242 RLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL-----GSDDINVVTCAAGILSNLTCNNY--KNKMMVCQVGGIEALV 314 (529)
T ss_dssp HHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHT-----TCSCHHHHHHHHHHHHHHTTTCH--HHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHH-----cCCCHHHHHHHHHHHHHHhcCCH--HHHHHHHHcCChHHHH
Confidence 7777777777765543211 1223455555543 22333444444444444443311 111111111 222333
Q ss_pred HhhcCcccCCCCCCcHHHHHHHHHHHHhhCCC------cccCcCChHHHHHHHHHhccCCCc-hhHHHHHHHHHHhhc
Q 002148 753 CLLTSIEEFTSRPDVADDCFLLASRCIRYCPQ------LFIPSSVFPSLVDCSMIGITVQHR-EASNSILTFLSDIFD 823 (959)
Q Consensus 753 ~~l~~~~~~~~~pDl~~~~f~l~~~~~~~~p~------~~l~s~~l~~~~~~~~~~l~~~~~-~~~~~~~~fl~~li~ 823 (959)
.++.. ..+.++++..-...+..+....|. .+.....++.++ ..+...+. ...+.++..+.++..
T Consensus 315 ~ll~~---~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~----~lL~~~~~~~v~~~a~~~l~nl~~ 385 (529)
T 1jdh_A 315 RTVLR---AGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV----KLLHPPSHWPLIKATVGLIRNLAL 385 (529)
T ss_dssp HHHHH---HTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHH----HTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHc---cCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHH----HHhccccchHHHHHHHHHHHHHhc
Confidence 33431 123356777766666666554443 111222233333 33454443 667788888887764
No 70
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=74.54 E-value=47 Score=33.41 Aligned_cols=118 Identities=9% Similarity=0.073 Sum_probs=74.3
Q ss_pred CCCcchhhHHHHHHHHhhcccCCccccchHHHhhhccCCCCcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhc
Q 002148 447 HNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSG 526 (959)
Q Consensus 447 ~~~w~~~Ea~l~~l~~l~e~~~~~~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~ 526 (959)
+.++.-..+++.+++.++...+......++.++..+.. .++.||..++..+|++.. ++ .++.++..+
T Consensus 102 d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d--~~~~vR~~a~~aL~~~~~-----~~---~~~~L~~~l--- 168 (280)
T 1oyz_A 102 DKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFD--KSTNVRRATAFAISVIND-----KA---TIPLLINLL--- 168 (280)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTC--SCHHHHHHHHHHHHTC--------C---CHHHHHHHH---
T ss_pred CCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhC--CCHHHHHHHHHHHHhcCC-----HH---HHHHHHHHH---
Confidence 46788889999999998865432222344555444432 479999999999998753 43 455555443
Q ss_pred cCCCH-HHHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHH
Q 002148 527 MSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVI 591 (959)
Q Consensus 527 l~~~~-~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi 591 (959)
.+++ .|+..|+.++.++.. .-+..+..+...+.. -+...|.....++|.+-
T Consensus 169 -~d~~~~vr~~a~~aL~~~~~--------~~~~~~~~L~~~l~d-----~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 169 -KDPNGDVRNWAAFAININKY--------DNSDIRDCFVEMLQD-----KNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp -TCSSHHHHHHHHHHHHHHTC--------CCHHHHHHHHHHTTC-----SCHHHHHHHHHHHHHTT
T ss_pred -cCCCHHHHHHHHHHHHhhcc--------CcHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHhC
Confidence 4442 489999999987631 123344555555542 24677888888887553
No 71
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=74.41 E-value=59 Score=30.65 Aligned_cols=109 Identities=12% Similarity=0.162 Sum_probs=72.7
Q ss_pred CCCcchhhHHHHHHHHhhcccCCccccchHHHhhhccCCCCcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhc
Q 002148 447 HNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSG 526 (959)
Q Consensus 447 ~~~w~~~Ea~l~~l~~l~e~~~~~~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~ 526 (959)
+.+|.....++.+++.+++ ...++.+++.+. ..++.+|..++..+|++. .++ .++.++. .
T Consensus 25 ~~~~~vr~~A~~~L~~~~~------~~~~~~L~~~l~--~~~~~vr~~a~~~L~~~~-----~~~---~~~~L~~----~ 84 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGD------ERAVEPLIKALK--DEDAWVRRAAADALGQIG-----DER---AVEPLIK----A 84 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCC------GGGHHHHHHHTT--CSSHHHHHHHHHHHHHHC-----CGG---GHHHHHH----H
T ss_pred CCCHHHHHHHHHHHHhcCC------hhHHHHHHHHHc--CCCHHHHHHHHHHHHhhC-----CHH---HHHHHHH----H
Confidence 5778888999999987764 245677777764 247899999999999874 232 4544444 4
Q ss_pred cCCCH-HHHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHH
Q 002148 527 MSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMV 590 (959)
Q Consensus 527 l~~~~-~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~v 590 (959)
+.+++ .++..|+.++.++... ..+..+...+.. -+...|...++++|.+
T Consensus 85 l~d~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~d-----~~~~vr~~a~~aL~~~ 134 (201)
T 3ltj_A 85 LKDEDGWVRQSAAVALGQIGDE----------RAVEPLIKALKD-----EDWFVRIAAAFALGEI 134 (201)
T ss_dssp TTCSSHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTC-----SSHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHhCcH----------HHHHHHHHHHcC-----CCHHHHHHHHHHHHHh
Confidence 45543 3899999999886431 122333334432 2467888888888866
No 72
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=71.58 E-value=1.2e+02 Score=33.12 Aligned_cols=349 Identities=12% Similarity=0.121 Sum_probs=166.3
Q ss_pred CCcchhhHHHHHHHHhhcccCCc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhhhhHHhhCCCCh------hhH
Q 002148 448 NEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDP------SIL 516 (959)
Q Consensus 448 ~~w~~~Ea~l~~l~~l~e~~~~~-----~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~------~~l 516 (959)
.++...+.+..+++.++..-+.. +...++.++++|.+ .++.++..+++.++..+.. +++.. .-+
T Consensus 14 ~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s--~~~~~~~~A~~aL~nLa~~---~~~~k~~i~~~G~i 88 (457)
T 1xm9_A 14 QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS--PNQNVQQAAAGALRNLVFR---STTNKLETRRQNGI 88 (457)
T ss_dssp SCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTS--SCHHHHHHHHHHHHHHHSS---CHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhcC---CHHHHHHHHHcCCH
Confidence 34566778888888887433221 12456777777764 4788999999998887642 12110 135
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHH--hhhhhhCCHHHHHHHHHHHhhc-------cCCCC----CCHhhHHHH
Q 002148 517 ASVLSILTSGMSTSEDTAAAAALAFRHICDD--CRKKLCGYLDGLYNVYRTAVNG-------EGSLK----VSAEDSLHL 583 (959)
Q Consensus 517 ~~~l~~l~~~l~~~~~v~~~A~~al~~lc~~--c~~~L~~~~~~ll~~~~~~~~~-------~~~~~----l~~~~~~~l 583 (959)
+.++..+-.. ++++ ++..|+.+|..++.. ++..+.. ..+..+..++.. ..... .+.+.....
T Consensus 89 ~~Lv~lL~~~-~~~~-~~~~a~~aL~nLa~~~~~~~~i~~---g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a 163 (457)
T 1xm9_A 89 REAVSLLRRT-GNAE-IQKQLTGLLWNLSSTDELKEELIA---DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNA 163 (457)
T ss_dssp HHHHHHHTTC-CCHH-HHHHHHHHHHHHHTSSSTHHHHHH---HHHHHHHHHTTHHHHTCC---------CCCHHHHHHH
T ss_pred HHHHHHHhhC-CCHH-HHHHHHHHHHHHhcCHHhHHHHHh---ccHHHHHHHHhccccccccCccchhcccccHHHHHHH
Confidence 5555555311 1234 999999999999963 3333331 333444444410 00000 122333466
Q ss_pred HHHHHHHHhcCChHHHHHHHH--HhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHH-------------------
Q 002148 584 VEALSMVITELPQVDAKKALE--MLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAY------------------- 642 (959)
Q Consensus 584 ~eai~~vi~~~p~~~~~~~l~--~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~------------------- 642 (959)
..+++.+... ++......+ ..+.+++.-+.........+ ..........+..++.
T Consensus 164 ~~aL~nLs~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~--~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~ 239 (457)
T 1xm9_A 164 TGCLRNLSSA--DAGRQTMRNYSGLIDSLMAYVQNCVAASRCD--DKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHTTS--HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTT--CTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred HHHHHHHccC--HHHHHHHHHcCCCHHHHHHHHHhhccccCCc--hHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence 6666666654 232222222 45666666655433222110 0011110111111110
Q ss_pred ---------Hhhhc-----------------CCcccHHHH-HHHHhHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhhh-
Q 002148 643 ---------IFRYV-----------------NHPEAVADA-IQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKR- 694 (959)
Q Consensus 643 ---------~~~~~-----------------~~~~~~~~~-~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~~~~~~~- 694 (959)
.+... ..++....+ -....+.+..++.. ..++++.|.++.++..+.+.-+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~-~~~~~~~e~a~~aL~nl~~~~~~~ 318 (457)
T 1xm9_A 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGK-SKKDATLEACAGALQNLTASKGLM 318 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTTCSSSH
T ss_pred ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhh-cCCHHHHHHHHHHHHHhccCcCcc
Confidence 00000 001000000 01233444455544 34578889988888876532111
Q ss_pred -------hh--hhhHHHHHHHHHHHHhhcCCcchhHhHHHHHHHhCCCccchHHHHHHHHHHHHHHHHhhcCcccC-CCC
Q 002148 695 -------FM--GITIGAILEEIQGLYQQHQQPCFLYLSSEVIKIFGSDPSCASYLHNLIEALFKRTTCLLTSIEEF-TSR 764 (959)
Q Consensus 695 -------~~--~~~l~~l~~~l~~~~~~~~~~~~L~l~~~li~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~-~~~ 764 (959)
.+ ...+|.+++.+. ++......-+..++..+..++.....+.. ..+.....+|...... ...
T Consensus 319 ~~~~~~~~v~~~~~l~~Lv~LL~-----~~~~~v~~~A~~aL~nls~~~~~~~~i~~---~~i~~Lv~lL~~~~~~~~~~ 390 (457)
T 1xm9_A 319 SSGMSQLIGLKEKGLPQIARLLQ-----SGNSDVVRSGASLLSNMSRHPLLHRVMGN---QVFPEVTRLLTSHTGNTSNS 390 (457)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHTT-----CSCHHHHHHHHHHHHHHHTSGGGHHHHHH---HTHHHHHHTTTSCCSCSTTH
T ss_pred hHHHHHHHHHHcCCchHHHHHHh-----CCCHhHHHHHHHHHHHHhcCHHHHHHHHH---hhhHHHHHhccCCCCCCCCc
Confidence 11 244666666542 22233333334444444444434333322 2334444555531111 112
Q ss_pred CCcHHHHHHHHHHHHhhCCCc---ccCcCChHHHHHHHHHhccCC-CchhHHHHHHHHHHhhc
Q 002148 765 PDVADDCFLLASRCIRYCPQL---FIPSSVFPSLVDCSMIGITVQ-HREASNSILTFLSDIFD 823 (959)
Q Consensus 765 pDl~~~~f~l~~~~~~~~p~~---~l~s~~l~~~~~~~~~~l~~~-~~~~~~~~~~fl~~li~ 823 (959)
++++......+..++...+.. +....-++.+.++ +... +..+.+.|+..+..++.
T Consensus 391 ~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L----~~~~~~~~i~~~A~~~L~~~~~ 449 (457)
T 1xm9_A 391 EDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINL----CRSSASPKAAEAARLLLSDMWS 449 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHH----HHCTTCHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHH----HcCCCcHHHHHHHHHHHHHHHc
Confidence 356777777777777665532 2222334444444 2334 56778888888887764
No 73
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=70.13 E-value=1.8e+02 Score=34.45 Aligned_cols=483 Identities=12% Similarity=0.099 Sum_probs=232.5
Q ss_pred CHHHHHHHHHHHHHHhcC-----hhhHHH---HHHHhc---c-CC--------CChhHHHHHHHHHHhhhhcCCCCCC-h
Q 002148 19 DDAVRMQADRWLQDFQHT-----IDAWQV---ADNLLH---D-AT--------SNLETLIFCSQTLRSKVQRDVEELP-S 77 (959)
Q Consensus 19 d~~~r~~A~~~L~~~q~s-----~~aw~~---~~~lL~---~-~~--------~~~~~~~faa~~L~~ki~~~w~~l~-~ 77 (959)
....|..|-+.|.+.-.. ++.|.. ...||. . +. ...++|..++..+.+-... +- +
T Consensus 163 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~----~~~~ 238 (810)
T 3now_A 163 SGAARDGVIELITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYEN----MYYD 238 (810)
T ss_dssp CHHHHHHHHHHHHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHT----CCSH
T ss_pred ChhhHHHHHHHHHHhCCccccccccchhhHhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHH----hccc
Confidence 556788888888765422 234433 223332 1 11 1456899888777654332 22 3
Q ss_pred hhHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHhhccc-c----ccCCccchHHHHHhcCCCCC-chhhHHHHhcc
Q 002148 78 EAVRGLQDSLNTLLKKF-HKGPPKVRTQISIAVAALAVHISA-E----DWGGGGIVNWLRDEMNSHPE-FVPGFLELLTV 150 (959)
Q Consensus 78 ~~~~~lr~~Ll~~l~~~-~~~~~~v~~kL~~~la~l~~~~~~-~----~Wp~~~~~~~l~~~l~~~~~-~~~~~L~~L~~ 150 (959)
..++..++.+-+++... ..+..--.-+-+.+++.++.-.+. . ... ++++.++..+++... .....++.+..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~--G~v~~li~Ll~s~~~~~q~~A~~al~~ 316 (810)
T 3now_A 239 EAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVARE--GILQMILAMATTDDELQQRVACECLIA 316 (810)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTT--THHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhcc--chHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34555665555555542 222222223346666666642211 0 112 366777777765432 22345555555
Q ss_pred cccccccccccCChhHHHHHHHHHHHhHHHHHHHHHHhhhh--hHhHHHHHHHHHHHH-hccCCCCCcccc---cchhHH
Q 002148 151 LPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHI--NELKEQVLEAFASWL-RLKHRIPGSVLA---SHPLVL 224 (959)
Q Consensus 151 l~EE~~~~~~~l~~~~r~~l~~~l~~~~~~vl~~l~~~l~~--~~~~~~~l~~~~sWi-~~~~~~~~~~~~---~~~ll~ 224 (959)
.+.. ...|..+.+ ... ..|...+.+ +.++..++-++...- ..+..-+...+. ..++++
T Consensus 317 aa~~---------~~~R~~I~~---~gv----~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~ 380 (810)
T 3now_A 317 ASSK---------KDKAKALCE---QGV----DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAE 380 (810)
T ss_dssp HTTS---------HHHHHTTHH---HHH----HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHH
T ss_pred HcCC---------cHHHHHHHH---cCc----HHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHH
Confidence 4332 122222222 122 444444443 246666666766532 221001101111 235566
Q ss_pred HHHhcCC----CCchHHHHHHHHHHHHhhhccCCCCCCCCchhHH--HHHHHHHHhhHHHhhhcCCCHHHHHHHHHHHHH
Q 002148 225 TALSSLH----SEILSEASVNVISELIHYSAAGSSGGATVNMPLI--QVIVPQIMSLKAHLTDSSKDEEDVKAIARLFAD 298 (959)
Q Consensus 225 ~~~~~L~----~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~--~~l~~~v~~l~~~l~~~~~d~e~~~~l~~l~~~ 298 (959)
.+...|. +++.+..|+++|..+-..+. .+..+. ...+|.++.+.. ..|.........++..
T Consensus 381 ~l~~lL~~~~~d~~v~~~AveaLayLS~~~~--------vk~~lv~d~g~Ip~LV~LL~-----s~d~~i~~~al~~L~N 447 (810)
T 3now_A 381 ACRRFLIKPGKDKDIRRWAADGLAYLTLDAE--------CKEKLIEDKASIHALMDLAR-----GGNQSCLYGVVTTFVN 447 (810)
T ss_dssp HHHHHHHCSSCCSSHHHHHHHHHHHHTTSHH--------HHHHHHHCHHHHHHHHHHHH-----TTCGGGHHHHHHHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHhCCcH--------HHHHHHHccchHHHHHHHhC-----CCChHHHHHHHHHHHH
Confidence 5655554 45688999999988875432 223333 123444443322 1222223333444444
Q ss_pred hhhHH-----------------------------------HHHHhcCCchHHHHHHHHHhhccCCCcchhhhhHHhHHHh
Q 002148 299 MGDSY-----------------------------------VELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSL 343 (959)
Q Consensus 299 ~~~~~-----------------------------------~~~l~~~~~~~~~~l~~ll~~~~~~~~~v~~~~l~fW~~l 343 (959)
+...+ +..+.+. ..++.+..+..+++.++.+.+......+
T Consensus 448 Lt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vvea-----GaVp~LV~LL~s~s~~vqe~Aa~aL~NL 522 (810)
T 3now_A 448 LCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANE-----GITTALCALAKTESHNSQELIARVLNAV 522 (810)
T ss_dssp HTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHT-----THHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHC-----cCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 33211 0111111 2567777777788888877777665554
Q ss_pred HHHHhhcccccccCcccchHHHHHHHHhhhH-HHHHHHHHHHHhhccCCCCCCCCChhhhHHHHHHHHHhhHHHHHhhhc
Q 002148 344 QVILTKRDSYISFGNEASAEAERSRRLQVFR-SAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYAVADVLIDAASV 422 (959)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~d~l~~~~~i 422 (959)
...- +.+....+ ..+.-|+..+ . .. +. ..|+...-++..++..
T Consensus 523 A~d~-------------------~~r~~Vv~~Gaip~Lv~LL-~----s~-----~~-------~~k~~Aa~AL~nL~~~ 566 (810)
T 3now_A 523 CGLK-------------------ELRGKVVQEGGVKALLRMA-L----EG-----TE-------KGKRHATQALARIGIT 566 (810)
T ss_dssp HTSH-------------------HHHHHHHHTTHHHHHHHHH-H----SS-----CH-------HHHHHHHHHHHHHHHH
T ss_pred cCCH-------------------HHHHHHHHCCCHHHHHHHH-c----cC-----CH-------HHHHHHHHHHHHHhcC
Confidence 3210 00111111 0111222222 1 11 11 1244444455554433
Q ss_pred cChHHHH-----HHHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHhhcccCCc-----cccchHHHhhhccCCCCcHHHH
Q 002148 423 LGGDATL-----KILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLL 492 (959)
Q Consensus 423 l~~~~~l-----~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~l~e~~~~~-----~~~~l~~l~~~l~~lp~~~~v~ 492 (959)
-.++..+ .-..+.|.+.+. + +.+-.....++++++.++..-... +...++.+++++.. .++.++
T Consensus 567 ~~p~~~~~~~~~~~aIppLv~LL~---~-~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s--~~~~Vq 640 (810)
T 3now_A 567 INPEVSFSGQRSLDVIRPLLNLLQ---Q-DCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLME--DHLYLT 640 (810)
T ss_dssp SCHHHHTTTHHHHHTHHHHHHTTS---T-TSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHS--CCTTHH
T ss_pred CChhhhhcchhhhcHHHHHHHHhC---C-CCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcC--CCHHHH
Confidence 2222211 012233333321 1 222222345788999888653221 12456777777654 367899
Q ss_pred HHHHHHHHhhhhHHhhCCCCh-hhH--HHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHh---hhhhhCCHHHHHHHHHH
Q 002148 493 QTVCLTIGAYSKWFDAASSDP-SIL--ASVLSILTSGMSTS-EDTAAAAALAFRHICDDC---RKKLCGYLDGLYNVYRT 565 (959)
Q Consensus 493 ~t~~~~ig~y~~~l~~~p~~~-~~l--~~~l~~l~~~l~~~-~~v~~~A~~al~~lc~~c---~~~L~~~~~~ll~~~~~ 565 (959)
..++++|+..+. +++.. .+. ...++.+...++.+ .+++..|+.||..++... .+.+... ...+..+..
T Consensus 641 ~~A~~~L~NLa~----~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~-~g~I~~Lv~ 715 (810)
T 3now_A 641 RAAAQCLCNLVM----SEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAI-ASWLDILHT 715 (810)
T ss_dssp HHHHHHHHHHTT----SHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTS-TTHHHHHHH
T ss_pred HHHHHHHHHHhC----ChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHH-cCCHHHHHH
Confidence 999999998763 11100 011 12344454445443 349999999999999732 2233321 233344445
Q ss_pred HhhccCCCCCCHhhHHHHHHHHHHHHhc
Q 002148 566 AVNGEGSLKVSAEDSLHLVEALSMVITE 593 (959)
Q Consensus 566 ~~~~~~~~~l~~~~~~~l~eai~~vi~~ 593 (959)
++.. -+.+.+.....+++.+...
T Consensus 716 LL~s-----~d~~vq~~A~~aL~NL~~~ 738 (810)
T 3now_A 716 LIAN-----PSPAVQHRGIVIILNMINA 738 (810)
T ss_dssp HHTC-----SSHHHHHHHHHHHHHHHTT
T ss_pred HHCC-----CCHHHHHHHHHHHHHHHhC
Confidence 5543 2577888889999888874
No 74
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=65.19 E-value=2.2e+02 Score=33.67 Aligned_cols=273 Identities=10% Similarity=0.022 Sum_probs=140.2
Q ss_pred HHHHhhHHHHHhhhccChHH----HHHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHhhcccCCcc------ccchHH
Q 002148 408 TRYAVADVLIDAASVLGGDA----TLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVE------AEVMPQ 477 (959)
Q Consensus 408 ~R~~~~d~l~~~~~il~~~~----~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~l~e~~~~~~------~~~l~~ 477 (959)
-|..++-++..+|.-++.+. +-..+.+.+..... ..+-...=-+.+++.++..+.++.. ...++.
T Consensus 220 ~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~ 294 (810)
T 3now_A 220 SSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLL-----APDMESKVRVTVAITALLNGPLDVGNQVVAREGILQM 294 (810)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHS-----SCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHH
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhc-----cCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHH
Confidence 46666666666666666322 32333333333321 1121111223555555555544321 345666
Q ss_pred HhhhccCCCCcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHhh-----hh
Q 002148 478 VMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS-EDTAAAAALAFRHICDDCR-----KK 551 (959)
Q Consensus 478 l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~-~~v~~~A~~al~~lc~~c~-----~~ 551 (959)
++.++.+ +|+.++..+++.+|..+.--...-. ....-.+.+...+... ..++..|+.+|.++..... +.
T Consensus 295 li~Ll~s--~~~~~q~~A~~al~~aa~~~~~R~~---I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~ 369 (810)
T 3now_A 295 ILAMATT--DDELQQRVACECLIAASSKKDKAKA---LCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRP 369 (810)
T ss_dssp HHHHHHS--SCHHHHHHHHHHHHHHTTSHHHHHT---THHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCS
T ss_pred HHHHhCC--CCHHHHHHHHHHHHHHcCCcHHHHH---HHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccc
Confidence 7666654 3788999999999986542111100 1222224444444333 2378888888888764221 12
Q ss_pred hh-CCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHH--HHhhhhhHHHHHHHHhcCCCccccc
Q 002148 552 LC-GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKAL--EMLCLPVVTPLQEIINQGPEILQKK 628 (959)
Q Consensus 552 L~-~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l--~~ll~p~~~~l~~~~~~~~~~~~~~ 628 (959)
+. .-++.++..+..++..+ ..+.+.+...++|++++... ++...... ...+.++++-+. ...
T Consensus 370 ~~~g~i~~Lv~~l~~lL~~~---~~d~~v~~~AveaLayLS~~--~~vk~~lv~d~g~Ip~LV~LL~----s~d------ 434 (810)
T 3now_A 370 FGDGAALKLAEACRRFLIKP---GKDKDIRRWAADGLAYLTLD--AECKEKLIEDKASIHALMDLAR----GGN------ 434 (810)
T ss_dssp STTTHHHHHHHHHHHHHHCS---SCCSSHHHHHHHHHHHHTTS--HHHHHHHHHCHHHHHHHHHHHH----TTC------
T ss_pred hhhccHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHhCC--cHHHHHHHHccchHHHHHHHhC----CCC------
Confidence 22 22577888888887753 13467899999999988654 22222222 345555554433 211
Q ss_pred CchhhhHHHHHHHHHhhhcC--------------------CcccH----------HHHH-HHHhHHHHHHHHhhcccHHH
Q 002148 629 HPRDLTVHIDRFAYIFRYVN--------------------HPEAV----------ADAI-QRLWPIFKAIFDIRAWDMRT 677 (959)
Q Consensus 629 ~~~~~~~~l~~l~~~~~~~~--------------------~~~~~----------~~~~-~~~~~~l~~il~~~~~~~~i 677 (959)
. .-....+..++.+..+.. .++|. ..++ ....|.+..++.. .++.+
T Consensus 435 ~-~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s--~s~~v 511 (810)
T 3now_A 435 Q-SCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKT--ESHNS 511 (810)
T ss_dssp G-GGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTC--CCHHH
T ss_pred h-HHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcC--CCHHH
Confidence 1 111223455555554321 01111 1111 1456777666653 56788
Q ss_pred HHHHHHHHHHHHHH--hhhhhh--hhHHHHHHHHH
Q 002148 678 MESLCRACKYAVRT--SKRFMG--ITIGAILEEIQ 708 (959)
Q Consensus 678 ~e~~~~~l~~~~~~--~~~~~~--~~l~~l~~~l~ 708 (959)
.+.++.++..+... ....+. ..+|+++..+.
T Consensus 512 qe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~ 546 (810)
T 3now_A 512 QELIARVLNAVCGLKELRGKVVQEGGVKALLRMAL 546 (810)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc
Confidence 99999998876532 111111 34666666653
No 75
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=61.40 E-value=2.3e+02 Score=32.52 Aligned_cols=255 Identities=12% Similarity=0.061 Sum_probs=131.1
Q ss_pred HHHccCCCHHHHHHHHHHHHHHhcCh----------hhHHHHHHHhccCCCChhHHHHHHHHHHhhhhcCCCCCChhhHH
Q 002148 12 NALYHHPDDAVRMQADRWLQDFQHTI----------DAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVR 81 (959)
Q Consensus 12 ~~l~~~~d~~~r~~A~~~L~~~q~s~----------~aw~~~~~lL~~~~~~~~~~~faa~~L~~ki~~~w~~l~~~~~~ 81 (959)
..+..++|+..|..|-..|.++-... ++......+|.+ +.+.+++..|+..|++.... .+.+.
T Consensus 20 v~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~-~~~~~~~~~A~~~L~~Ls~~------~~~~~ 92 (644)
T 2z6h_A 20 TKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN-TNDVETARCTAGTLHNLSHH------REGLL 92 (644)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHTTS------HHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcC------hhhHH
Confidence 33445778999999999998876543 345555666764 45788999999999954332 22232
Q ss_pred HHH-HHHHHHHHHhc-CCChHHHHHHHHHHHHHHhhccccccC---CccchHHHHHhcCCCCC-chhhHHHHhccccccc
Q 002148 82 GLQ-DSLNTLLKKFH-KGPPKVRTQISIAVAALAVHISAEDWG---GGGIVNWLRDEMNSHPE-FVPGFLELLTVLPEEV 155 (959)
Q Consensus 82 ~lr-~~Ll~~l~~~~-~~~~~v~~kL~~~la~l~~~~~~~~Wp---~~~~~~~l~~~l~~~~~-~~~~~L~~L~~l~EE~ 155 (959)
.+. ...+..|.... .+...++...+.+|..++..... ... +.+.++.+++.+.+... .....+..|..+....
T Consensus 93 ~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~-~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~ 171 (644)
T 2z6h_A 93 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG-AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 171 (644)
T ss_dssp HHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTT-HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcch-hHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcC
Confidence 222 22344444432 34567888888899888765321 110 01256777777765422 1223344555544211
Q ss_pred ccccccCChhHHHHHHHHHHHhHHHHHHHHHHhhhhhHhHHHHHHHHHHHHhccCCCCCcccccchhHHHHHhcCCCC--
Q 002148 156 FNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSE-- 233 (959)
Q Consensus 156 ~~~~~~l~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~~~~~~~l~~~~sWi~~~~~~~~~~~~~~~ll~~~~~~L~~~-- 233 (959)
.+.|..+.+ ...++.+++++... ..+.+...+++++..-... . -....+.....++.+...+.++
T Consensus 172 --------~~~~~~i~~--~g~v~~Lv~lL~~~-~~~~~~~~a~~~L~nLs~~-~-~~~~~l~~~g~l~~L~~ll~~~~~ 238 (644)
T 2z6h_A 172 --------QESKLIILA--SGGPQALVNIMRTY-TYEKLLWTTSRVLKVLSVC-S-SNKPAIVEAGGMQALGLHLTDPSQ 238 (644)
T ss_dssp --------HHHHHHHHH--TTHHHHHHHHHTTC-CCHHHHHHHHHHHHHHTTC-T-THHHHHHHTTHHHHHHTTTTCSCH
T ss_pred --------cHHHHHHHH--cCChHHHHHHHHcC-ChHHHHHHHHHHHHHHhcC-c-ccHHHHHHCCCHHHHHHHHhcCCH
Confidence 111211111 12233444443321 1123444455554432211 0 0001233445677777777654
Q ss_pred chHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhhhcCCCHHHHHHHHHHHHHhhh
Q 002148 234 ILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGD 301 (959)
Q Consensus 234 ~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~l~~~~~d~e~~~~l~~l~~~~~~ 301 (959)
++...|+.+|..+....... . .+..+++.++.+ + ...|.+.....+.++..++.
T Consensus 239 ~~~~~a~~~L~nL~~~~~~~------~---~~~~~i~~Lv~l---L--~~~d~~v~~~a~~aL~~L~~ 292 (644)
T 2z6h_A 239 RLVQNCLWTLRNLSDAATKQ------E---GMEGLLGTLVQL---L--GSDDINVVTCAAGILSNLTC 292 (644)
T ss_dssp HHHHHHHHHHHHHGGGCTTC------C---SCHHHHHHHHHH---T--TCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhcchhh------h---hhhhHHHHHHHH---H--cCCCHHHHHHHHHHHHHHHc
Confidence 56788888888886543211 1 112233333221 1 13455566666667766654
No 76
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=58.38 E-value=65 Score=32.46 Aligned_cols=186 Identities=9% Similarity=0.010 Sum_probs=88.6
Q ss_pred HhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCCcccHHHH
Q 002148 577 AEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADA 656 (959)
Q Consensus 577 ~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 656 (959)
=.+|...++.+..++...+.+.........+.-....+...+...+ .......++++..++..+.........
T Consensus 23 WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN-------~~v~~~al~~l~~~~~~~~~~~~~~~~ 95 (278)
T 4ffb_C 23 WKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN-------VVAQEQAIVALNSLIDAFASSSLKNAH 95 (278)
T ss_dssp HHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS-------HHHHHHHHHHHHHHHTTCC---CCHHH
T ss_pred HHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch-------HHHHHHHHHHHHHHHHHhhhhhcccch
Confidence 4578888898888887765443322111222223334444443222 222334577888777765432111111
Q ss_pred H-HHHhHHHHHHHHh-h-cccHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhh-cC--CcchhHhHHHHHHHh
Q 002148 657 I-QRLWPIFKAIFDI-R-AWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQ-HQ--QPCFLYLSSEVIKIF 730 (959)
Q Consensus 657 ~-~~~~~~l~~il~~-~-~~~~~i~e~~~~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~-~~--~~~~L~l~~~li~~~ 730 (959)
. ..+-.++..++++ . .....+++.+..++-.++...+. ...+++.+...+.. ++ ....+.++..++..|
T Consensus 96 ~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~-----~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~f 170 (278)
T 4ffb_C 96 NITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS-----ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAF 170 (278)
T ss_dssp HHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS-----SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Confidence 1 1122333344554 2 23445666666665544432111 12223333333322 11 134577888899999
Q ss_pred CCCccchHHHHHHHHHHHHHHHHhhcCcccCCCCCCcHHHHHHHHHHHHhhC
Q 002148 731 GSDPSCASYLHNLIEALFKRTTCLLTSIEEFTSRPDVADDCFLLASRCIRYC 782 (959)
Q Consensus 731 ~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~pDl~~~~f~l~~~~~~~~ 782 (959)
|... .. ....+..++.....++. +.+|+++.+-.+++..+.++.
T Consensus 171 g~~~-~~--~k~~l~~i~~~l~k~l~-----d~~~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 171 GLTN-VN--VQTFLPELLKHVPQLAG-----HGDRNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp TTTT-CC--HHHHHHHHGGGHHHHHT-----CSSHHHHHHHHHHHHHHHTC-
T ss_pred CCCc-CC--chhHHHHHHHHHHHHHh-----CCcHHHHHHHHHHHHHHHHHh
Confidence 9652 11 11112222222333343 567899999999999988764
No 77
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=56.04 E-value=2.4e+02 Score=31.07 Aligned_cols=134 Identities=15% Similarity=0.106 Sum_probs=82.3
Q ss_pred CcchhhHHHHHHHHhhcccCCc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHH
Q 002148 449 EWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSIL 523 (959)
Q Consensus 449 ~w~~~Ea~l~~l~~l~e~~~~~-----~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l 523 (959)
+....++++.++..++.. +.. +...++.++..+.. .++.++..++++++.++...... . ....+++.+
T Consensus 199 ~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~~~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~-~---~~~~~i~~L 271 (529)
T 1jdh_A 199 YEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTD--PSQRLVQNCLWTLRNLSDAATKQ-E---GMEGLLGTL 271 (529)
T ss_dssp CHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTTTS--SCHHHHHHHHHHHHHHHTTCTTC-S---CCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHHhC--CChHHHHHHHHHHHHHhcCChhh-H---HHHhHHHHH
Confidence 455677888888888742 111 12334455544432 36889999999999888654322 2 234566666
Q ss_pred HhccCCC-HHHHHHHHHHHHHHHHH---hhhhhh--CCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCCh
Q 002148 524 TSGMSTS-EDTAAAAALAFRHICDD---CRKKLC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQ 596 (959)
Q Consensus 524 ~~~l~~~-~~v~~~A~~al~~lc~~---c~~~L~--~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~ 596 (959)
.+.++++ .+++..|+.++.++|.. .+..+. .-++.+++.+..- .-+.+.+...+.+++.+...-|.
T Consensus 272 ~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~-------~~~~~v~~~a~~~L~nl~~~~~~ 343 (529)
T 1jdh_A 272 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA-------GDREDITEPAICALRHLTSRHQE 343 (529)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHTSSSTT
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHcc-------CCHHHHHHHHHHHHHHHHcCCch
Confidence 6666544 24999999999999863 333333 2245555544332 11256778888899988766554
No 78
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=50.60 E-value=3e+02 Score=33.06 Aligned_cols=103 Identities=15% Similarity=0.166 Sum_probs=69.6
Q ss_pred hhHHHHHHHHhhcccCCccccchHHHhhhccCCCCcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccCCCH-
Q 002148 453 AEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE- 531 (959)
Q Consensus 453 ~Ea~l~~l~~l~e~~~~~~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~- 531 (959)
+.++..+++-|+-+- .+.++.+++.+.+-. +|.+|+.+...+|..+ ..+|. +.++..|.+..++++
T Consensus 595 RraAViaLGlI~~g~----~e~v~rlv~~L~~~~-d~~VR~gAalALGli~---aGn~~-----~~aid~L~~L~~D~d~ 661 (963)
T 4ady_A 595 RRAAVIALGFVLLRD----YTTVPRIVQLLSKSH-NAHVRCGTAFALGIAC---AGKGL-----QSAIDVLDPLTKDPVD 661 (963)
T ss_dssp HHHHHHHHHHHTSSS----CSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHT---SSSCC-----HHHHHHHHHHHTCSSH
T ss_pred HHHHHHHHHhhccCC----HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhc---cCCCc-----HHHHHHHHHHccCCCH
Confidence 456666666553221 246788888776533 6899999999999765 33442 345555555556653
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHhh
Q 002148 532 DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVN 568 (959)
Q Consensus 532 ~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~~~ 568 (959)
.|+..|..|+..+-........|.+..++..+.+...
T Consensus 662 ~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~ 698 (963)
T 4ady_A 662 FVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVIT 698 (963)
T ss_dssp HHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHh
Confidence 4899999999988776666666777777777766654
No 79
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=47.02 E-value=1.9e+02 Score=27.16 Aligned_cols=198 Identities=12% Similarity=0.192 Sum_probs=123.0
Q ss_pred CCCcchhhHHHHHHHHhhcccCCccccchHHHhhhccCCCCcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhc
Q 002148 447 HNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSG 526 (959)
Q Consensus 447 ~~~w~~~Ea~l~~l~~l~e~~~~~~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~ 526 (959)
+.-|.-.--++-.+..+++..++-..+.+.+++.++..-. --.+.+.....+|..+ ..+|+ .+.++++.++..
T Consensus 43 DDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksE-aIpltqeIa~a~G~la---~i~Pe---~v~~vVp~lfan 115 (253)
T 2db0_A 43 DDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSE-AIPLTQEIAKAFGQMA---KEKPE---LVKSMIPVLFAN 115 (253)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC-SHHHHHHHHHHHHHHH---HHCHH---HHHHHHHHHHHH
T ss_pred cHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcc-cCchHHHHHHHHhHHH---HhCHH---HHHhhHHHHHHH
Confidence 5679888888999999998887655677788888775421 1123444455666654 45776 899999999865
Q ss_pred cC--CCHHHHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHH
Q 002148 527 MS--TSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALE 604 (959)
Q Consensus 527 l~--~~~~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~ 604 (959)
.. ++. .+..-+|++..+.......+ +.+..-+..++..+ +..+++..+.-| +++.....
T Consensus 116 yrigd~k-ikIn~~yaLeeIaranP~l~----~~v~rdi~smltsk-----d~~Dkl~aLnFi----~alGen~~----- 176 (253)
T 2db0_A 116 YRIGDEK-TKINVSYALEEIAKANPMLM----ASIVRDFMSMLSSK-----NREDKLTALNFI----EAMGENSF----- 176 (253)
T ss_dssp SCCCSHH-HHHHHHHHHHHHHHHCHHHH----HHHHHHHHHHTSCS-----SHHHHHHHHHHH----HTCCTTTH-----
T ss_pred HhcCCcc-ceecHHHHHHHHHHhChHHH----HHHHHHHHHHhcCC-----ChHHHHHHHHHH----HHHhccCc-----
Confidence 54 455 88899999999988655433 33333344444421 345555444333 34332222
Q ss_pred HhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcccH-HHHHHHHH
Q 002148 605 MLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDM-RTMESLCR 683 (959)
Q Consensus 605 ~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~-~i~e~~~~ 683 (959)
.++.|.+.++.+++...+. ..+ ..+.+.+.++... +| ++-+++...++.+.+.+ .+...+..
T Consensus 177 ~yv~PfLprL~aLL~D~de-----iVR--aSaVEtL~~lA~~----np------klRkii~~kl~e~~D~S~lv~~~V~e 239 (253)
T 2db0_A 177 KYVNPFLPRIINLLHDGDE-----IVR--ASAVEALVHLATL----ND------KLRKVVIKRLEELNDTSSLVNKTVKE 239 (253)
T ss_dssp HHHGGGHHHHHGGGGCSSH-----HHH--HHHHHHHHHHHTS----CH------HHHHHHHHHHHHCCCSCHHHHHHHHH
T ss_pred cccCcchHHHHHHHcCcch-----hhh--HHHHHHHHHHHHc----CH------HHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 4688999898888875421 122 3456777777642 22 35577777777777544 44555555
Q ss_pred HHHH
Q 002148 684 ACKY 687 (959)
Q Consensus 684 ~l~~ 687 (959)
.+.+
T Consensus 240 gL~r 243 (253)
T 2db0_A 240 GISR 243 (253)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 80
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=46.36 E-value=1.6e+02 Score=27.63 Aligned_cols=54 Identities=20% Similarity=0.049 Sum_probs=39.5
Q ss_pred HHHHccCCCHHHHHHHHHHHHHHhcChhhHHHHHHHhccCCCChhHHHHHHHHHHhh
Q 002148 11 LNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSK 67 (959)
Q Consensus 11 v~~l~~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~~~faa~~L~~k 67 (959)
+..++.++|+..|..|-..|..+. .+++......+|.+ .+..+|..|+..|...
T Consensus 86 L~~~l~~~~~~vr~~a~~aL~~~~-~~~~~~~L~~~l~d--~~~~vr~~a~~aL~~~ 139 (211)
T 3ltm_A 86 LIKALKDEDGWVRQSAAVALGQIG-DERAVEPLIKALKD--EDWFVRIAAAFALGEI 139 (211)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHC-CGGGHHHHHHHTTC--SSHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhC-cHHHHHHHHHHHhC--CCHHHHHHHHHHHHHc
Confidence 334446778888888888888775 46677777777753 5677888888888653
No 81
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=39.71 E-value=74 Score=33.52 Aligned_cols=63 Identities=6% Similarity=0.114 Sum_probs=49.9
Q ss_pred CcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccCCCHH-HHHHHHHHHHHHHHHhhhhhhCCHH
Q 002148 487 QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSED-TAAAAALAFRHICDDCRKKLCGYLD 557 (959)
Q Consensus 487 ~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~~~-v~~~A~~al~~lc~~c~~~L~~~~~ 557 (959)
.+|.+|..+++++|+.. .|+ .++.+...+-+++.+.+. |+..|+.+..+++....+.+..|++
T Consensus 116 ~N~~iR~lALRtL~~I~-----~~~---m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~ 179 (355)
T 3tjz_B 116 KEDSYRGPAVRALCQIT-----DST---MLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVN 179 (355)
T ss_dssp SCHHHHHHHHHHHHHHC-----CTT---THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHH
T ss_pred CcHhHHHHHHHHHhcCC-----CHH---HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 37899999999999974 465 788999999999987543 9999999999998876665444444
No 82
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=38.46 E-value=2.4e+02 Score=31.60 Aligned_cols=102 Identities=15% Similarity=0.160 Sum_probs=65.3
Q ss_pred chhhHHHHHHHHhhcccCCccccchHHHhhhccCCCCcHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccCCC
Q 002148 451 RPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS 530 (959)
Q Consensus 451 ~~~Ea~l~~l~~l~e~~~~~~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~~ 530 (959)
.-+|+|.-+++++ ..++.+ ...+.+++..+. ...=.+|..++..+.=+.+.+. -++.+++.++.|++++
T Consensus 243 PVRETaAQtLGaL-~hLp~e-~~IL~qLV~~l~--~~~WEVRHGGLLGLKYL~DLL~-------~Ld~Vv~aVL~GL~D~ 311 (800)
T 3oc3_A 243 PVRDAAAYLLSRI-YPLIGP-NDIIEQLVGFLD--SGDWQVQFSGLIALGYLKEFVE-------DKDGLCRKLVSLLSSP 311 (800)
T ss_dssp HHHHHHHHHHHHH-TTTSCS-CCHHHHHTTGGG--CSCHHHHHHHHHHHHHTGGGCC-------CHHHHHHHHHHHTTCS
T ss_pred ehHHHHHHHHHHH-HhCChh-HHHHHHHHhhcC--CCCeeehhhhHHHHHHHHHHHH-------HHHHHHHHHHhhcCCc
Confidence 3478999999998 677654 333444442211 1123577777666642211111 2789999999999887
Q ss_pred H-HHHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHhhc
Q 002148 531 E-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNG 569 (959)
Q Consensus 531 ~-~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~~~~ 569 (959)
+ +|+..||.++.-++ ....++.+++.+=+.+..
T Consensus 312 DDDVRAVAAetLiPIA------~p~~l~~LL~iLWd~L~~ 345 (800)
T 3oc3_A 312 DEDIKLLSAELLCHFP------ITDSLDLVLEKCWKNIES 345 (800)
T ss_dssp SHHHHHHHHHHHTTSC------CSSTHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHhhhhc------chhhHHHHHHHHHHHhhh
Confidence 4 59999999998888 224567777666665554
No 83
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=36.97 E-value=2.7e+02 Score=26.23 Aligned_cols=114 Identities=11% Similarity=0.009 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhHHhhCCCC------hhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHh
Q 002148 494 TVCLTIGAYSKWFDAASSD------PSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAV 567 (959)
Q Consensus 494 t~~~~ig~y~~~l~~~p~~------~~~l~~~l~~l~~~l~~~~~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~~ 567 (959)
..+..+.+..+=+-.||.. ++++|+++..++..=-.+..++..||..+..+|+.++..-..--+.+...+...+
T Consensus 61 ~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l 140 (196)
T 4atg_A 61 EVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVW 140 (196)
T ss_dssp HHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHH
Q ss_pred hccCCCCCCHhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHH
Q 002148 568 NGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPL 614 (959)
Q Consensus 568 ~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ll~p~~~~l 614 (959)
+++.--.....|.-.-+++++.+-....+-.-+..+.+.+
T Consensus 141 -------~dp~~~l~t~YGAi~GL~~lG~~~vr~~llP~l~~~~~~~ 180 (196)
T 4atg_A 141 -------MDPNRSEDSQYGALYCLSILSKNVVNTVIREHAEEYKRTI 180 (196)
T ss_dssp -------TCTTSCHHHHHHHHHHHHHHCHHHHHTHHHHHHHHHHHHT
T ss_pred -------cCCCCChHHHHHHHHHHHHhHHHHHHHhhhcCHHHHHHHH
No 84
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=36.52 E-value=2e+02 Score=30.11 Aligned_cols=142 Identities=11% Similarity=0.112 Sum_probs=79.2
Q ss_pred CCcchhhHHHHHHHHhhcccCCc------cccchHHHhhhccCCCCc--HHHHHHHHHHHHhhhhHHhhCCCChhhH--H
Q 002148 448 NEWRPAEAALFCIRAISTYVSVV------EAEVMPQVMALLPKLPQQ--PQLLQTVCLTIGAYSKWFDAASSDPSIL--A 517 (959)
Q Consensus 448 ~~w~~~Ea~l~~l~~l~e~~~~~------~~~~l~~l~~~l~~lp~~--~~v~~t~~~~ig~y~~~l~~~p~~~~~l--~ 517 (959)
.+....|.++.++..++...+.. ....++.+++.+..-.+. ..++..++.++...+.++..+++..+.+ .
T Consensus 183 ~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~ 262 (354)
T 3nmw_A 183 KKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN 262 (354)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHc
Confidence 34566788888888887644322 134566666666442211 1577777777777665443333311010 1
Q ss_pred HHHHHHHhccCCC-HHHHHHHHHHHHHHHH---HhhhhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhc
Q 002148 518 SVLSILTSGMSTS-EDTAAAAALAFRHICD---DCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 593 (959)
Q Consensus 518 ~~l~~l~~~l~~~-~~v~~~A~~al~~lc~---~c~~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~ 593 (959)
..++.++.-+.++ .+++..|+.++.+++. +.+..+... ..+..+.+++.. -+...+.....++..+...
T Consensus 263 g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~--G~i~~Lv~LL~s-----~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 263 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDM--GAVSMLKNLIHS-----KHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHT--THHHHHHTTTTC-----SSHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHC--CCHHHHHHHHhC-----CCHHHHHHHHHHHHHHHcC
Confidence 1334444444444 3499999999999984 233333311 123333344432 2456677778888887776
Q ss_pred CCh
Q 002148 594 LPQ 596 (959)
Q Consensus 594 ~p~ 596 (959)
-|.
T Consensus 336 ~~~ 338 (354)
T 3nmw_A 336 RPA 338 (354)
T ss_dssp CCG
T ss_pred CHH
Confidence 553
No 85
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=33.24 E-value=1.2e+02 Score=26.17 Aligned_cols=53 Identities=21% Similarity=0.087 Sum_probs=35.1
Q ss_pred HHHHccCCCHHHHHHHHHHHHHHhcChhhHHHHHHHhccCCCChhHHHHHHHHHHh
Q 002148 11 LNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRS 66 (959)
Q Consensus 11 v~~l~~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~~~faa~~L~~ 66 (959)
+..+..++|+..|..|-..|.++. .+++......+|.+ .+..+|..|+..|..
T Consensus 47 L~~~L~d~~~~vR~~A~~aL~~~~-~~~a~~~L~~~L~d--~~~~VR~~A~~aL~~ 99 (131)
T 1te4_A 47 LLESLSNEDWRIRGAAAWIIGNFQ-DERAVEPLIKLLED--DSGFVRSGAARSLEQ 99 (131)
T ss_dssp HHHGGGCSCHHHHHHHHHHHGGGC-SHHHHHHHHHHHHH--CCTHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHcC--CCHHHHHHHHHHHHH
Confidence 334445677777777777777765 45666666777754 455678777777764
No 86
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=30.76 E-value=3.2e+02 Score=26.58 Aligned_cols=135 Identities=15% Similarity=0.111 Sum_probs=78.0
Q ss_pred CCcchhhHHHHHHHHhhcccCCc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhhhhHHhhCCCCh-hhHHHHHH
Q 002148 448 NEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDP-SILASVLS 521 (959)
Q Consensus 448 ~~w~~~Ea~l~~l~~l~e~~~~~-----~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~-~~l~~~l~ 521 (959)
.+-.-.|.+.++|+.++..-+++ +...++.+++.|.+-+ ++.++..+..++...+. +++.. ......+.
T Consensus 64 ~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~-~~~~~e~a~~aL~nLS~----~~~~k~~i~~~~i~ 138 (233)
T 3tt9_A 64 QNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTR-DLETKKQITGLLWNLSS----NDKLKNLMITEALL 138 (233)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHT----SGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCC-CHHHHHHHHHHHHHHHc----ChhhHHHHHhccHH
Confidence 34556788999999998643322 1345777888775422 56677766655544432 11111 13333444
Q ss_pred HHHh-------ccCC----------CHHHHHHHHHHHHHHHH---HhhhhhhC--C-HHHHHHHHHHHhhccCCCCCCHh
Q 002148 522 ILTS-------GMST----------SEDTAAAAALAFRHICD---DCRKKLCG--Y-LDGLYNVYRTAVNGEGSLKVSAE 578 (959)
Q Consensus 522 ~l~~-------~l~~----------~~~v~~~A~~al~~lc~---~c~~~L~~--~-~~~ll~~~~~~~~~~~~~~l~~~ 578 (959)
.+.. |... ..++...|+.+|+.++. +.|+.+.. . ++.++..++...... +.+..
T Consensus 139 ~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~---~~~~k 215 (233)
T 3tt9_A 139 TLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADY---QPDDK 215 (233)
T ss_dssp HHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTT---CTTCH
T ss_pred HHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcc---cchhH
Confidence 4433 3211 11489999999999974 56777763 2 578888777765432 23445
Q ss_pred hHHHHHHHHHHH
Q 002148 579 DSLHLVEALSMV 590 (959)
Q Consensus 579 ~~~~l~eai~~v 590 (959)
.++..+.++-.+
T Consensus 216 ~~En~v~~L~nL 227 (233)
T 3tt9_A 216 ATENCVCILHNL 227 (233)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 566665555443
No 87
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=29.94 E-value=1.2e+02 Score=33.16 Aligned_cols=112 Identities=13% Similarity=0.173 Sum_probs=70.7
Q ss_pred CcchhhHHHHHHHHhhcccCCc-----cccchHHHhhhccCCCCcHHHHHHHHHHHHhhhhHHhhCCCCh-hhHHHHHHH
Q 002148 449 EWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDP-SILASVLSI 522 (959)
Q Consensus 449 ~w~~~Ea~l~~l~~l~e~~~~~-----~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig~y~~~l~~~p~~~-~~l~~~l~~ 522 (959)
+-.-.+.+.++++.++..-++. +...++.++++|..-+ ++.++..++++++..+.. ++.. ..+...++.
T Consensus 57 ~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~-~~~~~~~a~~aL~nLa~~----~~~~~~i~~g~i~~ 131 (457)
T 1xm9_A 57 NQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTG-NAEIQKQLTGLLWNLSST----DELKEELIADALPV 131 (457)
T ss_dssp CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCC-CHHHHHHHHHHHHHHHTS----SSTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCC-CHHHHHHHHHHHHHHhcC----HHhHHHHHhccHHH
Confidence 3455688999999998642221 2356788888886333 688999999999988753 2221 123345555
Q ss_pred HHhcc--------CC---------CHHHHHHHHHHHHHHHHH--hhhhhh---CCHHHHHHHHHH
Q 002148 523 LTSGM--------ST---------SEDTAAAAALAFRHICDD--CRKKLC---GYLDGLYNVYRT 565 (959)
Q Consensus 523 l~~~l--------~~---------~~~v~~~A~~al~~lc~~--c~~~L~---~~~~~ll~~~~~ 565 (959)
++..+ +. ..++...|+.+|.++|.. ++..+. +-++.++..+..
T Consensus 132 Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~ 196 (457)
T 1xm9_A 132 LADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQN 196 (457)
T ss_dssp HHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHH
T ss_pred HHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHh
Confidence 55544 11 123677999999999963 444555 346667766654
No 88
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=29.53 E-value=1.9e+02 Score=31.56 Aligned_cols=141 Identities=11% Similarity=0.107 Sum_probs=80.1
Q ss_pred CCcchhhHHHHHHHHhhcccCCc------cccchHHHhhhccCCCCc--HHHHHHHHHHHHhhhhHHhhCCCChhhH--H
Q 002148 448 NEWRPAEAALFCIRAISTYVSVV------EAEVMPQVMALLPKLPQQ--PQLLQTVCLTIGAYSKWFDAASSDPSIL--A 517 (959)
Q Consensus 448 ~~w~~~Ea~l~~l~~l~e~~~~~------~~~~l~~l~~~l~~lp~~--~~v~~t~~~~ig~y~~~l~~~p~~~~~l--~ 517 (959)
.+....+.++.+++.++...... ....++.+++.+..-.+. ..++..++.++...+.++..+++..+.+ .
T Consensus 299 ~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~ 378 (458)
T 3nmz_A 299 KKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN 378 (458)
T ss_dssp CSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHc
Confidence 45667788888888887643222 134566666666543221 2577888888877776544444321111 1
Q ss_pred HHHHHHHhccCCC-HHHHHHHHHHHHHHHH---HhhhhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHHHHHHHHHHhc
Q 002148 518 SVLSILTSGMSTS-EDTAAAAALAFRHICD---DCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 593 (959)
Q Consensus 518 ~~l~~l~~~l~~~-~~v~~~A~~al~~lc~---~c~~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~ 593 (959)
..++.++.-+.++ .+++..|+.++..++. +.+..+.. ...+..+.+++.. -+.+.+.....++..+...
T Consensus 379 G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~--~G~I~~Lv~LL~s-----~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 379 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWD--MGAVSMLKNLIHS-----KHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp THHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHH--HTHHHHHHTTTTC-----SSHHHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHH--CCCHHHHHHHHhC-----CCHHHHHHHHHHHHHHHcC
Confidence 2344455555544 3499999999999994 33333321 1223333344432 2455677777777777765
Q ss_pred CC
Q 002148 594 LP 595 (959)
Q Consensus 594 ~p 595 (959)
-|
T Consensus 452 ~p 453 (458)
T 3nmz_A 452 RP 453 (458)
T ss_dssp CS
T ss_pred CH
Confidence 44
No 89
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=27.09 E-value=4.4e+02 Score=31.65 Aligned_cols=151 Identities=15% Similarity=0.114 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHhhcccCCccccchHHHhhhccCCCCcHHHHHHHHHHHH-hhh
Q 002148 425 GDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIG-AYS 503 (959)
Q Consensus 425 ~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~l~e~~~~~~~~~l~~l~~~l~~lp~~~~v~~t~~~~ig-~y~ 503 (959)
....++.+.+.+.+. . +..|+. ++..+|+-+.-+ ..+..+.+++.+... .||.+|+.++.++| .|+
T Consensus 505 n~~ai~~LL~~~~e~----~--~e~vrR--~aalgLGll~~g----~~e~~~~li~~L~~~-~dp~vRygaa~alglAya 571 (963)
T 4ady_A 505 KPEAIHDMFTYSQET----Q--HGNITR--GLAVGLALINYG----RQELADDLITKMLAS-DESLLRYGGAFTIALAYA 571 (963)
T ss_dssp CHHHHHHHHHHHHHC----S--CHHHHH--HHHHHHHHHTTT----CGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhcc----C--cHHHHH--HHHHHHHhhhCC----ChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhc
Confidence 345555555554431 1 234543 355555544322 223456666666543 37888888877776 332
Q ss_pred hHHhhCCCChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhCCHHHHHHHHHHHhhccCCCCCCHhhHHHH
Q 002148 504 KWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHL 583 (959)
Q Consensus 504 ~~l~~~p~~~~~l~~~l~~l~~~l~~~~~v~~~A~~al~~lc~~c~~~L~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~l 583 (959)
. ..++ ..+..+|..+... ..+.+++.|..++-.+.-.-. ..++.++.. +.. .-+...|..+
T Consensus 572 G--TGn~---~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~----e~v~rlv~~---L~~-----~~d~~VR~gA 632 (963)
T 4ady_A 572 G--TGNN---SAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDY----TTVPRIVQL---LSK-----SHNAHVRCGT 632 (963)
T ss_dssp T--SCCH---HHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSC----SSHHHHTTT---GGG-----CSCHHHHHHH
T ss_pred C--CCCH---HHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCH----HHHHHHHHH---HHh-----cCCHHHHHHH
Confidence 1 0011 2344455555432 122366666666665532111 112222211 111 1235566666
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhh
Q 002148 584 VEALSMVITELPQVDAKKALEMLC 607 (959)
Q Consensus 584 ~eai~~vi~~~p~~~~~~~l~~ll 607 (959)
..|+|.+-..-|..+....+..+.
T Consensus 633 alALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 633 AFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHhccCCCcHHHHHHHHHHc
Confidence 666665555555555555555555
No 90
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=26.09 E-value=2.7e+02 Score=27.75 Aligned_cols=64 Identities=8% Similarity=0.111 Sum_probs=45.1
Q ss_pred CCCCCcHHHHHHHHHHHHhhCCCcccC-cCChHHHHHHHHHhccCCCchhHHHHHHHHHHhhcCc
Q 002148 762 TSRPDVADDCFLLASRCIRYCPQLFIP-SSVFPSLVDCSMIGITVQHREASNSILTFLSDIFDLA 825 (959)
Q Consensus 762 ~~~pDl~~~~f~l~~~~~~~~p~~~l~-s~~l~~~~~~~~~~l~~~~~~~~~~~~~fl~~li~~~ 825 (959)
..+|-++.+...++.++++.+.....+ .+.+..++..+..++...++.+-.++..++..+..|.
T Consensus 150 ~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 150 KKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred ccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 457899999999999999865433333 3345556666666677777777778888888777664
No 91
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=24.06 E-value=1.4e+02 Score=25.65 Aligned_cols=49 Identities=16% Similarity=0.072 Sum_probs=39.0
Q ss_pred HccCCCHHHHHHHHHHHHHHhcChhhHHHHHHHhccCCCChhHHHHHHHHHH
Q 002148 14 LYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLR 65 (959)
Q Consensus 14 l~~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~~~faa~~L~ 65 (959)
+..++|+..|..|-..|.++. .+++......++.+ .+..+|..|+..|.
T Consensus 81 ~L~d~~~~VR~~A~~aL~~~~-~~~a~~~L~~~l~d--~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 81 LLEDDSGFVRSGAARSLEQIG-GERVRAAMEKLAET--GTGFARKVAVNYLE 129 (131)
T ss_dssp HHHHCCTHHHHHHHHHHHHHC-SHHHHHHHHHHTTS--CCTHHHHHHHHHGG
T ss_pred HHcCCCHHHHHHHHHHHHHhC-cHHHHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence 335678899999999999887 67888888888864 56689999888765
No 92
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=23.81 E-value=9.4e+02 Score=28.26 Aligned_cols=310 Identities=7% Similarity=0.009 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHhhhhHHhhCCCChhhHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHhhhhhh--CCHHHHHHHH
Q 002148 488 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMST--SEDTAAAAALAFRHICDDCRKKLC--GYLDGLYNVY 563 (959)
Q Consensus 488 ~~~v~~t~~~~ig~y~~~l~~~p~~~~~l~~~l~~l~~~l~~--~~~v~~~A~~al~~lc~~c~~~L~--~~~~~ll~~~ 563 (959)
+..++..+..++...+.--..+|+ -.+|.++..+-.++.. -. -..+...|++.+..-++..+. .|-..+...+
T Consensus 352 ~~~~~~~~~~~l~~La~l~P~~~~--lVlP~vL~r~y~sLe~~~l~-e~Hrl~~aL~~l~~~~r~lv~~~~yr~hl~~lL 428 (799)
T 1vsy_4 352 NPDIANYYISCFAYLLELDPSNAY--LIYDKILIDLYDTLADQFIN-SRHRIISSLKQFTRVIRFIVMDKLYRVHITNVL 428 (799)
T ss_dssp SHHHHHHHHHHHHHHHHTCCTTHH--HHHHHHHHHHHHHHTTTTTT-CHHHHHHHHHHHHTTHHHHTTSTTGGGHHHHHH
T ss_pred CcchHHHHHHHHHHHHhcCCCccc--eehHHHHHHHHHHhcccccc-chhHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Q ss_pred HHHhhccCCCCCCHhhHHHHHHHHHHHHhcCChHHHH---------HHHHHhhhhhHHHHHHHHhcCCCcccccCchhhh
Q 002148 564 RTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAK---------KALEMLCLPVVTPLQEIINQGPEILQKKHPRDLT 634 (959)
Q Consensus 564 ~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~---------~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~ 634 (959)
.-++.+ -+.-+..=-...+..++.+.+.+|-.+.. .....+++-.+..++. +......+......-
T Consensus 429 ~l~Lpg--ID~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~d~~~~~ 503 (799)
T 1vsy_4 429 SMLVSK--LDMNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKC---GESSKTFRVDDELLN 503 (799)
T ss_dssp HHHHHT--CCSSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHT---TCCSSSCCCCTTHHH
T ss_pred HHHhcc--CCcccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhhhhcc---ccccccccccHHHHH
Q ss_pred HHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhc
Q 002148 635 VHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQH 714 (959)
Q Consensus 635 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~i~e~~~~~l~~~~~~~~~~~~~~l~~l~~~l~~~~~~~ 714 (959)
..+...++.|... +..++.+++.+++. ..+..++..+...+..++..+.+. +...+++.+..-+.++
T Consensus 504 ~~~~~sT~~f~~~-----v~~f~drvf~llen-----~~Ee~l~~~l~~~~~~l~~~lS~~---if~~~l~k~~~fv~~n 570 (799)
T 1vsy_4 504 NAFKASTTVFQSM-----LKVYVEKIFQLVDV-----DLEDSLVTKINQTTMILQESMDDK---IFNYFASLLNRNFWSN 570 (799)
T ss_dssp HHHHHHTSTHHHH-----HHHHHHHHHHHTTS-----CCCTHHHHHHHHHHHHHHHTBCHH---HHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhhHHHH-----HHHHHHHHHHHHhc-----CchHHHHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHHHh
Q ss_pred CCcchhHhHHHH----HHHhCCCccchHHHHHHHHHHHHHHHHhhcCc-----ccCCC--CCCcHHHHHHHHHHHHhhCC
Q 002148 715 QQPCFLYLSSEV----IKIFGSDPSCASYLHNLIEALFKRTTCLLTSI-----EEFTS--RPDVADDCFLLASRCIRYCP 783 (959)
Q Consensus 715 ~~~~~L~l~~~l----i~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~-----~~~~~--~pDl~~~~f~l~~~~~~~~p 783 (959)
-....-...+.+ +..+... +-. .+...+..+...+...+... ..... .-.-..=|+.+++.++++..
T Consensus 571 ~~~~a~~~v~~L~~~~~~a~~~~-~P~-~~~~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~L~w~l~iL~~~v~~~g 648 (799)
T 1vsy_4 571 DSFKEKDPNYELVTIPLAALVRR-NNG-LSKELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVKLVLYLTALNDVLRNCH 648 (799)
T ss_dssp SCCCSSSCCTHHHHHHHHHHHHH-CGG-GHHHHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHHHHHHHHHHHHHHTTTG
T ss_pred hhhhHHHHHHHHHHHHHHHHHHh-CHH-HHHHHHHHHHHHHHHHHhccccccccccccCcchHHHHHHHHHHHHHHhcCc
Q ss_pred CcccCcCChHHHHHHHHHhc-cCCCchhHHHHHHHHHHhh
Q 002148 784 QLFIPSSVFPSLVDCSMIGI-TVQHREASNSILTFLSDIF 822 (959)
Q Consensus 784 ~~~l~s~~l~~~~~~~~~~l-~~~~~~~~~~~~~fl~~li 822 (959)
..++. .-+.+++++-..+ ........+.+++++..++
T Consensus 649 ~~lL~--y~deL~~il~~~~~~~k~~~~~~~~~~ll~~lL 686 (799)
T 1vsy_4 649 ESLLE--YSDELITFMKYLYDNVTNPPLDVITSIVIHSAL 686 (799)
T ss_dssp GGGGT--THHHHHHHHHHHHHSCCCHHHHHHHTTHHHHHH
T ss_pred HHHHc--cHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHH
No 93
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=20.71 E-value=6.3e+02 Score=25.06 Aligned_cols=169 Identities=10% Similarity=0.068 Sum_probs=94.0
Q ss_pred CChhHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHHHHHHH-HhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHH
Q 002148 52 SNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLK-KFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWL 130 (959)
Q Consensus 52 ~~~~~~~faa~~L~~ki~~~w~~l~~~~~~~lr~~Ll~~l~-~~~~~~~~v~~kL~~~la~l~~~~~~~~Wp~~~~~~~l 130 (959)
++..-+.-|...|...+.. .++.....-+.++.|+. ++.+.+..|..+....|..++-+.....+.- .+.
T Consensus 58 ~d~k~~~~ale~L~~~l~~-----~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~---~~~- 128 (266)
T 2of3_A 58 KDFKQHLAALDSLVRLADT-----SPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPM---SQE- 128 (266)
T ss_dssp SCHHHHHHHHHHHHHHHHH-----CHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCC---CHH-
T ss_pred CCHHHHHHHHHHHHHHhhh-----ChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccc---hHH-
Confidence 3555566677788776653 23333344444677665 3445566677788888877765543223321 100
Q ss_pred HHhcCCCCCchhhHHHHhcccccccccccccCChhHHHHHHHHH---HH-hH-HHHHHHHHHhhhhh--HhHHHHHHHHH
Q 002148 131 RDEMNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKEL---TS-QM-EVALSTLTACLHIN--ELKEQVLEAFA 203 (959)
Q Consensus 131 ~~~l~~~~~~~~~~L~~L~~l~EE~~~~~~~l~~~~r~~l~~~l---~~-~~-~~vl~~l~~~l~~~--~~~~~~l~~~~ 203 (959)
-.-.++-.|.|-.++.+ ..-|..+++.+ .. .. ..++..+...+.+. ..+..++.++.
T Consensus 129 ------------ea~~~lP~LveKlGd~k----~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~ 192 (266)
T 2of3_A 129 ------------EVSAFVPYLLLKTGEAK----DNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLVIE 192 (266)
T ss_dssp ------------HHHHHHHHHHHGGGCSS----HHHHHHHHHHHHHHHHHHCHHHHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHhCCCh----HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 01112222233333221 22233333322 11 22 24667766666552 46777888888
Q ss_pred HHHhccCCCCCcccccchhH---HHHHhcCCCC--chHHHHHHHHHHHHhhhc
Q 002148 204 SWLRLKHRIPGSVLASHPLV---LTALSSLHSE--ILSEASVNVISELIHYSA 251 (959)
Q Consensus 204 sWi~~~~~~~~~~~~~~~ll---~~~~~~L~~~--~~~~~a~~~l~~ii~~~~ 251 (959)
+-++-. ++++ ...+ +.+...++++ +++++|..|+.++....+
T Consensus 193 ~li~~~-G~~~-----~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~G 239 (266)
T 2of3_A 193 YYITNA-GISP-----LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEG 239 (266)
T ss_dssp HHHHHH-CSGG-----GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhc-CCCc-----cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 888763 3432 2345 7777888765 589999999999997654
Done!