BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002151
(959 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 1241 bits (3210), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 627/883 (71%), Positives = 703/883 (79%), Gaps = 11/883 (1%)
Query: 7 ALEAISKEAVDLENIPIEEVFENLKCTSDGLSSDEVQSRLEVFGHXXXXXXXXXXXXXFL 66
+LE I E VDLE IPIEEVF+ LKC+ +GL++ E + R+++FG FL
Sbjct: 3 SLEDIKNETVDLEKIPIEEVFQQLKCSREGLTTQEGEDRIQIFGPNKLEEKKESKLLKFL 62
Query: 67 GFMWNPLSWVMEAAALMAITLARGGGKDVDYHDFVGILALLIINSTISFIEEXXXXXXXX 126
GFMWNPLSWVME AA+MAI LA G G+ D+ DFVGI+ LL+INSTISFIEE
Sbjct: 63 GFMWNPLSWVMEMAAIMAIALANGDGRPPDWQDFVGIICLLVINSTISFIEENNAGNAAA 122
Query: 127 XXXXXXXXXXKVLRDGKWSEEDASVLVPGDIISIKLGDIIPADARLLEGDPLKIDQSALT 186
KVLRDGKWSE++A++LVPGDI+SIKLGDIIPADARLLEGDPLK+DQSALT
Sbjct: 123 ALMAGLAPKTKVLRDGKWSEQEAAILVPGDIVSIKLGDIIPADARLLEGDPLKVDQSALT 182
Query: 187 GESLPVTKNPGDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVESTTHVGHFQQVLTS 246
GESLPVTK+PG V+SGSTCKQGEIEAVVIATGVHTFFGKAAHLV+ST VGHFQ+VLT+
Sbjct: 183 GESLPVTKHPGQEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTA 242
Query: 247 IGNFCXXXXXXXXXXXXXXXYGHQERGYRVGIDNLLVILIGGIPIAMPTVLSVTMAIGSH 306
IGNFC Y Q R YR GIDNLLV+LIGGIPIAMPTVLSVTMAIGSH
Sbjct: 243 IGNFCICSIAIGMVIEIIVMYPIQRRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSH 302
Query: 307 RLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKILIEVVFGNGVDKDMVILT 366
RLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKL+VDK L+E VF GV+KD V+L
Sbjct: 303 RLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLVE-VFCKGVEKDQVLLF 361
Query: 367 AARASRLENQDAIDAAIVSMLADPKEARAEITEVHFLPFNPTDKRTALTYTDKNGKMHRA 426
AA ASR+ENQDAIDAA+V MLADPKEARA I EVHFLPFNP DKRTALTY D +G HR
Sbjct: 362 AAMASRVENQDAIDAAMVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDGSGNWHRV 421
Query: 427 SKGAPEQILNLAWNKADIEKKVHSVIDKFAERGLRSLGVARQEVPAGTKDSPGGPWEFIG 486
SKGAPEQIL LA D+ KKV S+IDK+AERGLRSL VARQ VP TK+SPG PWEF+G
Sbjct: 422 SKGAPEQILELAKASNDLSKKVLSIIDKYAERGLRSLAVARQVVPEKTKESPGAPWEFVG 481
Query: 487 LLPLFDPPRHDSAETIRRALDLGVSVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGEK 546
LLPLFDPPRHDSAETIRRAL+LGV+VKMITGDQLAIGKETGRRLGMGTNMYPSSALLG
Sbjct: 482 LLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGTH 541
Query: 547 KD-TIVGLPVDDLIEKADGFAGVFPEHKFEIVKRLQARKHIVGMTGDGVNDAPALKVADI 605
KD + +PV++LIEKADGFAGVFPEHK+EIVK+LQ RKHIVGMTGDGVNDAPALK ADI
Sbjct: 542 KDANLASIPVEELIEKADGFAGVFPEHKYEIVKKLQERKHIVGMTGDGVNDAPALKKADI 601
Query: 606 GIXXXXXXXXXXXXXXIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFL 665
GI IVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIV GF+
Sbjct: 602 GIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFM 661
Query: 666 LLTSIWEFDFPPFMVLIIAILNDGTIMTISKDRVKPSPSPDSWKLREIFATGVVIGSYLA 725
L+ IWEFDF FMVLIIAILNDGTIMTISKDRVKPSP+PDSWKL+EIFATGVV+G Y A
Sbjct: 662 LIALIWEFDFSAFMVLIIAILNDGTIMTISKDRVKPSPTPDSWKLKEIFATGVVLGGYQA 721
Query: 726 LTTVIFFWAIFETDFFQNHFHVQSLRNSGGKKIPKVLNGQLASAVYLQVSTISQALIFVT 785
+ TVIFFWA +TDFF + F V+S+R++ N +L AVYLQVS ISQALIFVT
Sbjct: 722 IMTVIFFWAAHKTDFFSDTFGVRSIRDN---------NHELMGAVYLQVSIISQALIFVT 772
Query: 786 RSRGWSFTERPGLLLVTAFIIAQLVATLISALATSDFAGIHKIGWRWTSIIWLYNIIIYM 845
RSR WSF ERPG LL+ AF+IAQL+ATLI+ A +FA I IGW W +IWLY+I+ Y
Sbjct: 773 RSRSWSFVERPGALLMIAFLIAQLIATLIAVYANWEFAKIRGIGWGWAGVIWLYSIVTYF 832
Query: 846 LLDPIKVAVGYALSGRAWSLVYNRRTALTAQKDFGREAREAAW 888
LD K A+ Y LSG+AW ++ +TA T +KD+G+E REA W
Sbjct: 833 PLDVFKFAIRYILSGKAWLNLFENKTAFTMKKDYGKEEREAQW 875
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 442 bits (1136), Expect = e-124, Method: Compositional matrix adjust.
Identities = 290/839 (34%), Positives = 435/839 (51%), Gaps = 75/839 (8%)
Query: 33 TSDGLSSDEVQSRLEVFGHXXXXXXXXXXXXXFLGFMWNPLSWVMEAAALMAITLARGGG 92
T GL+S+EV R +G FLGF P+ +VME AA++A L
Sbjct: 84 TRVGLTSEEVVQRRRKYGLNQMKEEKENHFLKFLGFFVGPIQFVMEGAAVLAAGLE---- 139
Query: 93 KDVDYHDFVGILALLIINSTISFIEEXXXXXXXXXXXXXXXXXXKVLRDGKWSEEDASVL 152
D+ DF I LL++N+ + F++E VLRDG E +A +
Sbjct: 140 ---DWVDFGVICGLLLLNAVVGFVQEFQAGSIVDELKKTLALKAVVLRDGTLKEIEAPEV 196
Query: 153 VPGDIISIKLGDIIPADARLLEGDP-LKIDQSALTGESLPVTKNPGDGVYSGSTCKQGEI 211
VPGDI+ ++ G IIPAD R++ D L++DQSALTGESL V K+ GD V++ S K+GE
Sbjct: 197 VPGDILQVEEGTIIPADGRIVTDDAFLQVDQSALTGESLAVDKHKGDQVFASSAVKRGEA 256
Query: 212 EAVVIATGVHTFFGKAAHLVESTTH-VGHFQQVLTSIGNFCXXXXXXXXXXXXXXXYGHQ 270
V+ ATG +TF G+AA LV + + GHF +VL IG +
Sbjct: 257 FVVITATGDNTFVGRAAALVNAASGGSGHFTEVLNGIGTILLILVIFTLLIVWVSSFYRS 316
Query: 271 ERGYRVGIDNLLVILIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVL 330
++ ++ L I I G+P+ +P V++ TMA+G+ L+++ AI ++++AIE +AG+++L
Sbjct: 317 NPIVQI-LEFTLAITIIGVPVGLPAVVTTTMAVGAAYLAKKKAIVQKLSAIESLAGVEIL 375
Query: 331 CSDKTGTLTLNKLTV-DKILIEVVFGNGVDKDMVILTAARASRLENQ--DAIDAAIVSML 387
CSDKTGTLT NKL++ D + GVD + ++LTA A+ + + DAID A + L
Sbjct: 376 CSDKTGTLTKNKLSLHDPYTVA-----GVDPEDLMLTACLAASRKKKGIDAIDKAFLKSL 430
Query: 388 ADPKEARAEITE---VHFLPFNPTDKRTALTYTDKNGKMHRASKGAPEQILNLAWNKADI 444
A++ +++ + F PF+P K+ G+ KGAP +L I
Sbjct: 431 KYYPRAKSVLSKYKVLQFHPFDPVSKKVVAVVESPQGERITCVKGAPLFVLKTVEEDHPI 490
Query: 445 EKKVHSV----IDKFAERGLRSLGVARQEVPAGTKDSPGGPWEFIGLLPLFDPPRHDSAE 500
++V + +FA RG RSLGVAR+ G WE +G++P DPPRHD+ +
Sbjct: 491 PEEVDQAYKNKVAEFATRGFRSLGVARKR--------GEGSWEILGIMPCMDPPRHDTYK 542
Query: 501 TIRRALDLGVSVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGEKKDTIVGLPVDDLIE 560
T+ A LG+S+KM+TGD + I +ET R+LG+GTN+Y + L + G V D +E
Sbjct: 543 TVCEAKTLGLSIKMLTGDAVGIARETSRQLGLGTNIYNAERLGLGGGGDMPGSEVYDFVE 602
Query: 561 KADGFAGVFPEHKFEIVKRLQARKHIVGMTGDGVNDAPALKVADIGIXXXXXXXXXXXXX 620
ADGFA VFP+HK+ +V+ LQ R ++V MTGDGVNDAP+LK AD GI
Sbjct: 603 AADGFAEVFPQHKYNVVEILQQRGYLVAMTGDGVNDAPSLKKADTGIAVEGSSDAARSAA 662
Query: 621 XIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFLLLTSIWEFDFPPFMV 680
IV PGL II A+ TSR IF RM Y +Y ++++I + + L +I +V
Sbjct: 663 DIVFLAPGLGAIIDALKTSRQIFHRMYAYVVYRIALSIHLEIFLGLWIAILNRSLNIELV 722
Query: 681 LIIAILNDGTIMTISKDRVKPSPSPDSWKLREIFATGVVIGSYLALTTVIFFWAIFETDF 740
+ IAI D + I+ D S +P W L +++ V++G LA+ T W T +
Sbjct: 723 VFIAIFADVATLAIAYDNAPYSQTPVKWNLPKLWGMSVLLGVVLAVGT----WITVTTMY 778
Query: 741 FQ--NHFHVQSLRNSGGKKIPKVLNGQLASAVYLQVSTISQALIFVTRSRGWSFTERPGL 798
Q N VQ+ G + ++LQ+S LIF+TR+ G ++ P
Sbjct: 779 AQGENGGIVQNF-------------GNMDEVLFLQISLTENWLIFITRANGPFWSSIPSW 825
Query: 799 LLVTAFIIAQLVATLISALATSDFAGIHKIGWRW-----TSI-----IWLYNIIIYMLL 847
L A + ++AT + W W TSI IW+++ I+ ++
Sbjct: 826 QLSGAIFLVDILATCFTI-------------WGWFEHSDTSIVAVVRIWIFSFGIFCIM 871
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 168 bits (425), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 168/689 (24%), Positives = 285/689 (41%), Gaps = 112/689 (16%)
Query: 100 FVGIL--ALLIINSTISFIEEXXXXXXXXXXXXXXXXXXKVLRDGKWSEEDASVLVPGDI 157
++G++ A++II S+ +E V+R+G+ +A +V GD+
Sbjct: 106 YLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIRNGEKMSINAEEVVVGDL 165
Query: 158 ISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKNPG----------DGVYSGSTCK 207
+ +K GD IPAD R++ + K+D S+LTGES P T++P + + + C
Sbjct: 166 VEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRSPDFTNENPLETRNIAFFSTNCV 225
Query: 208 QGEIEAVVIATGVHTFFGKAAHLVES--------TTHVGHFQQVLTSIGNFCXXXXXXXX 259
+G +V+ TG T G+ A L + HF ++T + F
Sbjct: 226 EGTARGIVVYTGDRTVMGRIATLASGLEGGQTPIAAEIEHFIHIITGVAVFLGVSFFILS 285
Query: 260 XXXXXXXYGHQERGYRVGIDNLLVILIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMT 319
E + + L+ I++ +P + ++V + + + R++++ + K +
Sbjct: 286 LIL--------EYTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLE 337
Query: 320 AIEEMAGMDVLCSDKTGTLTLNKLTVDKI----------LIEVVFGNGVDKDMVI-LTAA 368
A+E + +CSDKTGTLT N++TV + E G DK L +
Sbjct: 338 AVETLGSTSTICSDKTGTLTQNRMTVAHMWSDNQIHEADTTENQSGVSFDKTSATWLALS 397
Query: 369 RASRLENQ-------------------DAIDAAIVSML----ADPKEARAEITEVHFLPF 405
R + L N+ DA ++A++ + KE R T++ +PF
Sbjct: 398 RIAGLCNRAVFQANQENLPILKRAVAGDASESALLKCIELCCGSVKEMRERYTKIVEIPF 457
Query: 406 NPTDKRTALTYTDKNGKMHR---ASKGAPEQILN-------------LAWNKADIEKKVH 449
N T+K + + N R KGAPE+IL+ L D + +
Sbjct: 458 NSTNKYQLSIHKNPNTAEPRHLLVMKGAPERILDRCSSILIHGKEQPLDEELKDAFQNAY 517
Query: 450 SVIDKFAER--GLRSLGVARQEVPAGTK---DSPGGPWE---FIGLLPLFDPPRHDSAET 501
+ ER G L + ++ P G + D P + F+GL+ + DPPR +
Sbjct: 518 LELGGLGERVLGFCHLFLPDEQFPEGFQFDTDDVNFPLDNLCFVGLISMIDPPRAAVPDA 577
Query: 502 IRRALDLGVSVKMITGDQ-------------LAIGKETGRRLGMGTNMYPSSALLGEKKD 548
+ + G+ V M+TGD ++ G ET + N+ S + K
Sbjct: 578 VGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKA 637
Query: 549 TIV-GLPVDDLI-EKADG---------FAGVFPEHKFEIVKRLQARKHIVGMTGDGVNDA 597
+V G + D+ E+ D FA P+ K IV+ Q + IV +TGDGVND+
Sbjct: 638 CVVHGSDLKDMTSEQLDDILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDS 697
Query: 598 PALKVADIGIXX-XXXXXXXXXXXXIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSI 656
PA K ADIG+ ++L + + I++ V R IF +K Y ++
Sbjct: 698 PASKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTS 757
Query: 657 TIRIVLGFLLLTSIWEFDFPPFMVLIIAI 685
I + FL+ I P V I+ I
Sbjct: 758 NIPEITPFLIFI-IANIPLPLGTVTILCI 785
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 166 bits (420), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 162/704 (23%), Positives = 284/704 (40%), Gaps = 116/704 (16%)
Query: 73 LSWVMEAAALMAITLARGGGK---DVDYHDFVGILALLIINSTISFIEEXXXXXXXXXXX 129
L WV A L+A + G D + + + ++A++++ + +E
Sbjct: 113 LMWVAAAICLIAFAIQASEGDLTTDDNLYLALALIAVVVVTGCFGYYQEFKSTNIIASFK 172
Query: 130 XXXXXXXKVLRDGKWSEEDASVLVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGES 189
V+RDG + +A LV GD++ +K GD +PAD R+L+ K+D S+LTGES
Sbjct: 173 NLVPQQATVIRDGDKFQINADQLVVGDLVEMKGGDRVPADIRILQAQGRKVDNSSLTGES 232
Query: 190 LPVTKNPG----------DGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVESTTH--- 236
P T++P + + + C +G + +V+ TG T G+ A L +
Sbjct: 233 EPQTRSPECTHESPLETRNIAFFSTMCLEGTAQGLVVNTGDRTIIGRIASLASGVENEKT 292
Query: 237 -----VGHFQQVLTSIGNFCXXXXXXXXXXXXXXXYGHQERGYRVGIDNLLVILIGGIPI 291
+ HF ++ + G+ + + + I++ +P
Sbjct: 293 PIAIEIEHFVDIIAGLA-----ILFGATFFIVAMCIGYT---FLRAMVFFMAIVVAYVPE 344
Query: 292 AMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKILI- 350
+ ++V +++ + RL+ + + K + A+E + V+CSDKTGTLT N++TV +
Sbjct: 345 GLLATVTVCLSLTAKRLASKNCVVKNLEAVETLGSTSVICSDKTGTLTQNRMTVSHLWFD 404
Query: 351 ---------EVVFGNGVDKD--------MVILTAARASRLENQDAIDAAIVSMLADPKEA 393
E G D+ V+ RA+ QDA+ ++ D E
Sbjct: 405 NHIHSADTTEDQSGQTFDQSSETWRALCRVLTLCNRAAFKSGQDAVPVPKRIVIGDASET 464
Query: 394 ----------------RAEITEVHFLPFNPTDKRTALTYTDKNGKMHR---ASKGAPEQI 434
R +V +PFN T+K +T ++ + R KGAPE++
Sbjct: 465 ALLKFSELTLGNAMGYRERFPKVCEIPFNSTNKFQLSIHTLEDPRDPRHVLVMKGAPERV 524
Query: 435 LNLA---------------WNKADIEKKVHSVIDKFAER--GLRSLGVARQEVPAG---- 473
L W +A + + + ER G L ++ ++ P G
Sbjct: 525 LERCSSILIKGQELPLDEQWREA--FQTAYLSLGGLGERVLGFCQLYLSEKDYPPGYAFD 582
Query: 474 --TKDSPGGPWEFIGLLPLFDPPRHDSAETIRRALDLGVSVKMITGDQLAIGKETGRRLG 531
+ P F GL+ + DPPR + + + G+ V M+TGD K +G
Sbjct: 583 VEAMNFPTSGLSFAGLVSMIDPPRATVPDAVLKCRTAGIRVIMVTGDHPITAKAIAASVG 642
Query: 532 MGTNMYPSSALLG----------EKKDT----IVGLPVDD-----LIEKADG-----FAG 567
+ + + + +KD I G+ + D L+E FA
Sbjct: 643 IISEGSETVEDIAARLRVPVDQVNRKDARACVINGMQLKDMDPSELVEALRTHPEMVFAR 702
Query: 568 VFPEHKFEIVKRLQARKHIVGMTGDGVNDAPALKVADIGIXX-XXXXXXXXXXXXIVLTE 626
P+ K IV+ Q IV +TGDGVND+PALK ADIG+ ++L +
Sbjct: 703 TSPQQKLVIVESCQRLGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDAAKNAADMILLD 762
Query: 627 PGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFLLLTSI 670
+ I++ V R IF +K Y ++ I + +L+ ++
Sbjct: 763 DNFASIVTGVEQGRLIFDNLKKSIAYTLTKNIPELTPYLIYITV 806
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 166 bits (419), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 167/689 (24%), Positives = 284/689 (41%), Gaps = 112/689 (16%)
Query: 100 FVGIL--ALLIINSTISFIEEXXXXXXXXXXXXXXXXXXKVLRDGKWSEEDASVLVPGDI 157
++G++ A++II S+ +E V+R+G+ +A +V GD+
Sbjct: 100 YLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIRNGEKMSINAEEVVVGDL 159
Query: 158 ISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKNPG----------DGVYSGSTCK 207
+ +K GD IPAD R++ + K+D S+LTGES P T++P + + + C
Sbjct: 160 VEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRSPDFTNENPLETRNIAFFSTNCV 219
Query: 208 QGEIEAVVIATGVHTFFGKAAHLVES--------TTHVGHFQQVLTSIGNFCXXXXXXXX 259
+G +V+ TG T G+ A L + HF ++T + F
Sbjct: 220 EGTARGIVVYTGDRTVMGRIATLASGLEGGQTPIAAEIEHFIHIITGVAVFLGVSFFILS 279
Query: 260 XXXXXXXYGHQERGYRVGIDNLLVILIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMT 319
E + + L+ I++ +P + ++V + + + R++++ + K +
Sbjct: 280 LIL--------EYTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLE 331
Query: 320 AIEEMAGMDVLCSDKTGTLTLNKLTVDKI----------LIEVVFGNGVDKDMVI-LTAA 368
A+E + +CS KTGTLT N++TV + E G DK L +
Sbjct: 332 AVETLGSTSTICSXKTGTLTQNRMTVAHMWSDNQIHEADTTENQSGVSFDKTSATWLALS 391
Query: 369 RASRLENQ-------------------DAIDAAIVSML----ADPKEARAEITEVHFLPF 405
R + L N+ DA ++A++ + KE R T++ +PF
Sbjct: 392 RIAGLCNRAVFQANQENLPILKRAVAGDASESALLKCIELCCGSVKEMRERYTKIVEIPF 451
Query: 406 NPTDKRTALTYTDKNGKMHR---ASKGAPEQILN-------------LAWNKADIEKKVH 449
N T+K + + N R KGAPE+IL+ L D + +
Sbjct: 452 NSTNKYQLSIHKNPNTAEPRHLLVMKGAPERILDRCSSILIHGKEQPLDEELKDAFQNAY 511
Query: 450 SVIDKFAER--GLRSLGVARQEVPAGTK---DSPGGPWE---FIGLLPLFDPPRHDSAET 501
+ ER G L + ++ P G + D P + F+GL+ + DPPR +
Sbjct: 512 LELGGLGERVLGFCHLFLPDEQFPEGFQFDTDDVNFPLDNLCFVGLISMIDPPRAAVPDA 571
Query: 502 IRRALDLGVSVKMITGDQ-------------LAIGKETGRRLGMGTNMYPSSALLGEKKD 548
+ + G+ V M+TGD ++ G ET + N+ S + K
Sbjct: 572 VGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKA 631
Query: 549 TIV-GLPVDDLI-EKADG---------FAGVFPEHKFEIVKRLQARKHIVGMTGDGVNDA 597
+V G + D+ E+ D FA P+ K IV+ Q + IV +TGDGVND+
Sbjct: 632 CVVHGSDLKDMTSEQLDDILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDS 691
Query: 598 PALKVADIGIXX-XXXXXXXXXXXXIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSI 656
PA K ADIG+ ++L + + I++ V R IF +K Y ++
Sbjct: 692 PASKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTS 751
Query: 657 TIRIVLGFLLLTSIWEFDFPPFMVLIIAI 685
I + FL+ I P V I+ I
Sbjct: 752 NIPEITPFLIFI-IANIPLPLGTVTILCI 779
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 159 bits (403), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 166/673 (24%), Positives = 276/673 (41%), Gaps = 115/673 (17%)
Query: 100 FVGIL--ALLIINSTISFIEEXXXXXXXXXXXXXXXXXXKVLRDGKWSEEDASVLVPGDI 157
++G++ ++I+ S+ +E V+RDG+ S +A +V GD+
Sbjct: 136 YLGVVLSTVVIVTGCFSYYQEAKSSRIMDSFKNMVPQQALVIRDGEKSTINAEFVVAGDL 195
Query: 158 ISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKNPG----------DGVYSGSTCK 207
+ +K GD IPAD R++ K+D S+LTGES P T++P + + + C
Sbjct: 196 VEVKGGDRIPADLRIISAHGCKVDNSSLTGESEPQTRSPEFSSENPLETRNIAFFSTNCV 255
Query: 208 QGEIEAVVIATGVHTFFGKAAHLVESTTHVGH---------FQQVLTSIGNFCXXXXXXX 258
+G VV+ TG T G+ A L S VG F ++T + F
Sbjct: 256 EGTARGVVVYTGDRTVMGRIATLA-SGLEVGRTPIAIEIEHFIHIITGVAVF---LGVSF 311
Query: 259 XXXXXXXXYGHQERGYRVGIDNLLVILIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRM 318
Y E + L+ I++ +P + ++V + + + R++++ + K +
Sbjct: 312 FILSLILGYSWLE-----AVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNL 366
Query: 319 TAIEEMAGMDVLCSDKTGTLTLNKLTVDKILI----------EVVFGNGVDKDMVILTA- 367
A+E + +CSDKTGTLT N++TV + E G DK +A
Sbjct: 367 EAVETLGSTSTICSDKTGTLTQNRMTVAHMWFDNQIHEADTTENQSGAAFDKTSATWSAL 426
Query: 368 ARASRLEN-------QDAIDAAIVSMLADPKEA----------------RAEITEVHFLP 404
+R + L N QD + S+ D E+ R ++ +P
Sbjct: 427 SRIAALCNRAVFQAGQDNVPILKRSVAGDASESALLKCIELCCGSVQGMRDRNPKIVEIP 486
Query: 405 FNPTDKRTALTYTDKNGKMHR---ASKGAPEQILNLAWN----------KADIEKKVHSV 451
FN T+K + ++ R KGAPE+IL+ K D+++ +
Sbjct: 487 FNSTNKYQLSIHENEKSSESRYLLVMKGAPERILDRCSTILLNGAEEPLKEDMKEAFQNA 546
Query: 452 IDKFAERGLRSLGVARQEVPAGTKDSPGGPWE------------FIGLLPLFDPPRHDSA 499
+ G R LG +P K + G P++ F+GL+ + DPPR
Sbjct: 547 YLELGGLGERVLGFCHFALPE-DKYNEGYPFDADEPNFPTTDLCFVGLMAMIDPPRAAVP 605
Query: 500 ETIRRALDLGVSVKMITGDQ-------------LAIGKETGRRLGMGTNMYPSSALLGEK 546
+ + + G+ V M+TGD ++ G ET + N+ +
Sbjct: 606 DAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETIEDIAARLNIPIGQVNPRDA 665
Query: 547 KDTIV-GLPVDDL-IEKADG---------FAGVFPEHKFEIVKRLQARKHIVGMTGDGVN 595
K +V G + DL E D FA P+ K IV+ Q + IV +TGDGVN
Sbjct: 666 KACVVHGSDLKDLSTEVLDDILHYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVN 725
Query: 596 DAPALKVADIGIXX-XXXXXXXXXXXXIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAV 654
D+PALK ADIG+ ++L + + I++ V R IF +K Y +
Sbjct: 726 DSPALKKADIGVAMGISGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTL 785
Query: 655 SITIRIVLGFLLL 667
+ I + FL+
Sbjct: 786 TSNIPEITPFLVF 798
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 113/405 (27%), Positives = 180/405 (44%), Gaps = 53/405 (13%)
Query: 323 EMAGMDVLCSDKTGTLTLNKLTVDKI--LIEVVFGNGVDKDMVILTAARA-SRLENQDAI 379
E+A + LC+D + K +K+ E V+K V T R S++E +A
Sbjct: 412 ELATICALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANAC 471
Query: 380 DAAIVSMLADPKEARAEITEVHFLPFNPTDKRTALTYTDKNGKMHRAS-------KGAPE 432
++ I ++ KE E + D+++ Y K RA+ KGAPE
Sbjct: 472 NSVIRQLMK--KEFTLEFSR---------DRKSMSVYCSP-AKSSRAAVGNKMFVKGAPE 519
Query: 433 QILNLAWN----------KADIEKKVHSVIDKFA--ERGLRSLGVARQEVPAGTKD---- 476
+++ +++K+ SVI ++ LR L +A ++ P ++
Sbjct: 520 GVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLD 579
Query: 477 --SPGGPWE----FIGLLPLFDPPRHDSAETIRRALDLGVSVKMITGDQLAIGKETGRRL 530
S +E F+G++ + DPPR + +I+ D G+ V MITGD RR+
Sbjct: 580 DSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRI 639
Query: 531 GM-GTNM-YPSSALLGEKKDTIVGLPVDDLIEKADGFAGVFPEHKFEIVKRLQARKHIVG 588
G+ G N A G + D + + +A FA V P HK +IV+ LQ+ I
Sbjct: 640 GIFGENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSYDEITA 699
Query: 589 MTGDGVNDAPALKVADIGIXXXXXXXXXXXXXXIVLTEPGLSVIISAVLTSRAIFQRMKN 648
MTGDGVNDAPALK A+IGI +VL + S I++AV RAI+ MK
Sbjct: 700 MTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQ 759
Query: 649 YTIYAVSITIRIVLGFLLLTSIWEFDFP----PFMVLIIAILNDG 689
+ Y +S + V+ L ++ P P +L + ++ DG
Sbjct: 760 FIRYLISSNVGEVVCIFLTAAL---GLPEALIPVQLLWVNLVTDG 801
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 90/348 (25%), Positives = 151/348 (43%), Gaps = 31/348 (8%)
Query: 34 SDGLSSDEVQSRLEVFGHXXXXXXXXXXXXXFLGFMWNPL-SWVMEAAALMAITLA---R 89
+ GL+ D+V+ LE +GH + + L ++ AA ++ LA
Sbjct: 21 TTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLAWFEE 80
Query: 90 GGGKDVDYHDFVGILALLIINSTISFIEEXXXXXXXXXXXXXXXXXXKVLRDGKWSEE-- 147
G + + IL +LI N+ + +E KV R + S +
Sbjct: 81 GEETITAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRI 140
Query: 148 DASVLVPGDIISIKLGDIIPADARLL--EGDPLKIDQSALTGESLPVTK----------- 194
A +VPGDI+ + +GD +PAD R+L + L++DQS LTGES+ V K
Sbjct: 141 KARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAV 200
Query: 195 --NPGDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVESTTH-VGHFQQVLTSIGNFC 251
+ + ++SG+ G+ +V TGV T GK + +T QQ L G
Sbjct: 201 NQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQL 260
Query: 252 XXXXXXXXXXXXXXXYGHQE---------RGYRVGIDNLLVILIGGIPIAMPTVLSVTMA 302
GH RG + + + IP +P V++ +A
Sbjct: 261 SKVISLICVAVWLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLA 320
Query: 303 IGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKILI 350
+G+ R++++ AI + + ++E + V+CS KTGTLT N+++V K+ I
Sbjct: 321 LGTRRMAKKNAIVRSLPSVETLGCTSVICSXKTGTLTTNQMSVCKMFI 368
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 113/405 (27%), Positives = 180/405 (44%), Gaps = 53/405 (13%)
Query: 323 EMAGMDVLCSDKTGTLTLNKLTVDKI--LIEVVFGNGVDKDMVILTAARA-SRLENQDAI 379
E+A + LC+D + K +K+ E V+K V T R S++E +A
Sbjct: 413 ELATICALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANAC 472
Query: 380 DAAIVSMLADPKEARAEITEVHFLPFNPTDKRTALTYTDKNGKMHRAS-------KGAPE 432
++ I ++ KE E + D+++ Y K RA+ KGAPE
Sbjct: 473 NSVIRQLMK--KEFTLEFSR---------DRKSMSVYCSP-AKSSRAAVGNKMFVKGAPE 520
Query: 433 QILNLAWN----------KADIEKKVHSVIDKFA--ERGLRSLGVARQEVPAGTKD---- 476
+++ +++K+ SVI ++ LR L +A ++ P ++
Sbjct: 521 GVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLD 580
Query: 477 --SPGGPWE----FIGLLPLFDPPRHDSAETIRRALDLGVSVKMITGDQLAIGKETGRRL 530
S +E F+G++ + DPPR + +I+ D G+ V MITGD RR+
Sbjct: 581 DSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRI 640
Query: 531 GM-GTNM-YPSSALLGEKKDTIVGLPVDDLIEKADGFAGVFPEHKFEIVKRLQARKHIVG 588
G+ G N A G + D + + +A FA V P HK +IV+ LQ+ I
Sbjct: 641 GIFGENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSYDEITA 700
Query: 589 MTGDGVNDAPALKVADIGIXXXXXXXXXXXXXXIVLTEPGLSVIISAVLTSRAIFQRMKN 648
MTGDGVNDAPALK A+IGI +VL + S I++AV RAI+ MK
Sbjct: 701 MTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQ 760
Query: 649 YTIYAVSITIRIVLGFLLLTSIWEFDFP----PFMVLIIAILNDG 689
+ Y +S + V+ L ++ P P +L + ++ DG
Sbjct: 761 FIRYLISSNVGEVVCIFLTAAL---GLPEALIPVQLLWVNLVTDG 802
Score = 100 bits (249), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 91/348 (26%), Positives = 152/348 (43%), Gaps = 31/348 (8%)
Query: 34 SDGLSSDEVQSRLEVFGHXXXXXXXXXXXXXFLGFMWNPL-SWVMEAAALMAITLA---R 89
+ GL+ D+V+ LE +GH + + L ++ AA ++ LA
Sbjct: 22 TTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLAWFEE 81
Query: 90 GGGKDVDYHDFVGILALLIINSTISFIEEXXXXXXXXXXXXXXXXXXKVLRDGKWSEE-- 147
G + + IL +LI N+ + +E KV R + S +
Sbjct: 82 GEETITAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRI 141
Query: 148 DASVLVPGDIISIKLGDIIPADARLL--EGDPLKIDQSALTGESLPVTK----------- 194
A +VPGDI+ + +GD +PAD R+L + L++DQS LTGES+ V K
Sbjct: 142 KARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAV 201
Query: 195 --NPGDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVESTTH-VGHFQQVLTSIGNFC 251
+ + ++SG+ G+ +V TGV T GK + +T QQ L G
Sbjct: 202 NQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQL 261
Query: 252 XXXXXXXXXXXXXXXYGHQE---------RGYRVGIDNLLVILIGGIPIAMPTVLSVTMA 302
GH RG + + + IP +P V++ +A
Sbjct: 262 SKVISLICVAVWLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLA 321
Query: 303 IGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKILI 350
+G+ R++++ AI + + ++E + V+CSDKTGTLT N+++V K+ I
Sbjct: 322 LGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFI 369
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 113/405 (27%), Positives = 180/405 (44%), Gaps = 53/405 (13%)
Query: 323 EMAGMDVLCSDKTGTLTLNKLTVDKI--LIEVVFGNGVDKDMVILTAARA-SRLENQDAI 379
E+A + LC+D + K +K+ E V+K V T R S++E +A
Sbjct: 412 ELATICALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANAC 471
Query: 380 DAAIVSMLADPKEARAEITEVHFLPFNPTDKRTALTYTDKNGKMHRAS-------KGAPE 432
++ I ++ KE E + D+++ Y K RA+ KGAPE
Sbjct: 472 NSVIRQLMK--KEFTLEFSR---------DRKSMSVYCSP-AKSSRAAVGNKMFVKGAPE 519
Query: 433 QILNLAWN----------KADIEKKVHSVIDKFA--ERGLRSLGVARQEVPAGTKD---- 476
+++ +++K+ SVI ++ LR L +A ++ P ++
Sbjct: 520 GVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLD 579
Query: 477 --SPGGPWE----FIGLLPLFDPPRHDSAETIRRALDLGVSVKMITGDQLAIGKETGRRL 530
S +E F+G++ + DPPR + +I+ D G+ V MITGD RR+
Sbjct: 580 DSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRI 639
Query: 531 GM-GTNM-YPSSALLGEKKDTIVGLPVDDLIEKADGFAGVFPEHKFEIVKRLQARKHIVG 588
G+ G N A G + D + + +A FA V P HK +IV+ LQ+ I
Sbjct: 640 GIFGENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSYDEITA 699
Query: 589 MTGDGVNDAPALKVADIGIXXXXXXXXXXXXXXIVLTEPGLSVIISAVLTSRAIFQRMKN 648
MTGDGVNDAPALK A+IGI +VL + S I++AV RAI+ MK
Sbjct: 700 MTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQ 759
Query: 649 YTIYAVSITIRIVLGFLLLTSIWEFDFP----PFMVLIIAILNDG 689
+ Y +S + V+ L ++ P P +L + ++ DG
Sbjct: 760 FIRYLISSNVGEVVCIFLTAAL---GLPEALIPVQLLWVNLVTDG 801
Score = 100 bits (249), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 91/348 (26%), Positives = 152/348 (43%), Gaps = 31/348 (8%)
Query: 34 SDGLSSDEVQSRLEVFGHXXXXXXXXXXXXXFLGFMWNPL-SWVMEAAALMAITLA---R 89
+ GL+ D+V+ LE +GH + + L ++ AA ++ LA
Sbjct: 21 TTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLAWFEE 80
Query: 90 GGGKDVDYHDFVGILALLIINSTISFIEEXXXXXXXXXXXXXXXXXXKVLRDGKWSEE-- 147
G + + IL +LI N+ + +E KV R + S +
Sbjct: 81 GEETITAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRI 140
Query: 148 DASVLVPGDIISIKLGDIIPADARLL--EGDPLKIDQSALTGESLPVTK----------- 194
A +VPGDI+ + +GD +PAD R+L + L++DQS LTGES+ V K
Sbjct: 141 KARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAV 200
Query: 195 --NPGDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVESTTH-VGHFQQVLTSIGNFC 251
+ + ++SG+ G+ +V TGV T GK + +T QQ L G
Sbjct: 201 NQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQL 260
Query: 252 XXXXXXXXXXXXXXXYGHQE---------RGYRVGIDNLLVILIGGIPIAMPTVLSVTMA 302
GH RG + + + IP +P V++ +A
Sbjct: 261 SKVISLICVAVWLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLA 320
Query: 303 IGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKILI 350
+G+ R++++ AI + + ++E + V+CSDKTGTLT N+++V K+ I
Sbjct: 321 LGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFI 368
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 114 bits (285), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 114/411 (27%), Positives = 180/411 (43%), Gaps = 66/411 (16%)
Query: 323 EMAGMDVLCSDKTGTLTLNKLTVDKI--LIEVVFGNGVDKDMVILTAARA-SRLENQDAI 379
E+A + LC+D + K +K+ E V+K V T R S++E +A
Sbjct: 412 ELATICALCNDSSLDFNETKGIYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANAC 471
Query: 380 DAAIVSMLADPKEARAEIT---EVHFLPFNPTDKRTALTYTDKNGKMHRASKGAPEQILN 436
++ I ++ KE E + + + +P R A+ KM KGAPE +++
Sbjct: 472 NSVIRQLMK--KEFTLEFSRDRKSMSVYCSPAKSRAAV-----GNKMF--VKGAPEGVID 522
Query: 437 LAWN----------KADIEKKVHSVIDKFA--ERGLRSLGVARQEVPAGTKD------SP 478
+++K+ SVI ++ LR L +A ++ P ++ +
Sbjct: 523 RCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSTK 582
Query: 479 GGPWE----FIGLLPLFDPPRHDSAETIRRALDLGVSVKMITGDQLAIGKETGRRLGMGT 534
+E F+G++ + DPPR + +I+ D G+ V MITGD RR+G
Sbjct: 583 FMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIG--- 639
Query: 535 NMYPSSALLGEKKDT----IVGLPVDDL--------IEKADGFAGVFPEHKFEIVKRLQA 582
+ GE +D G DDL +A FA V P HK +IV+ LQ+
Sbjct: 640 -------IFGENEDVADRAYTGREFDDLPLAEQREACRRACCFARVEPTHKSKIVEYLQS 692
Query: 583 RKHIVGMTGDGVNDAPALKVADIGIXXXXXXXXXXXXXXIVLTEPGLSVIISAVLTSRAI 642
I MTGDGVNDAPALK A+IGI +VL + S I++AV RAI
Sbjct: 693 FDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEGRAI 752
Query: 643 FQRMKNYTIYAVSITIRIVLGFLLLTSIWEFDFP----PFMVLIIAILNDG 689
+ MK + Y +S + V+ L ++ P P +L + ++ DG
Sbjct: 753 YNNMKQFIRYLISSNVGEVVCIFLTAAL---GLPEALIPVQLLWVNLVTDG 800
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 95/364 (26%), Positives = 159/364 (43%), Gaps = 35/364 (9%)
Query: 34 SDGLSSDEVQSRLEVFGHXXXXXXXXXXX-XXFLGFMWNPLSWVMEAAALMAITLA---R 89
+ GL+ D+V+ LE +GH L + L ++ AA ++ LA
Sbjct: 21 TTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVLEQFEDLLVRILLLAACISFVLAWFEE 80
Query: 90 GGGKDVDYHDFVGILALLIINSTISFIEEXXXXXXXXXXXXXXXXXXKVLRDGKWSEE-- 147
G + + IL +LI N+ + +E KV R + S +
Sbjct: 81 GEETVTAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRI 140
Query: 148 DASVLVPGDIISIKLGDIIPADARLL--EGDPLKIDQSALTGESLPVTK----------- 194
A +VPGDI+ + +GD +PAD R+L + L++DQS LTGES+ V K
Sbjct: 141 KARDIVPGDIVEVAVGDKVPADIRILTIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAV 200
Query: 195 --NPGDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVESTTH-VGHFQQVLTSIGNFC 251
+ + ++SG+ G+ +V TGV T GK + +T QQ L G
Sbjct: 201 NQDKKNMLFSGTNIAAGKAIGIVATTGVGTEIGKIRDQMAATEQDKTPLQQKLDEFGEQL 260
Query: 252 XXXXXXXXXXXXXXXYGHQE---------RGYRVGIDNLLVILIGGIPIAMPTVLSVTMA 302
GH RG + + + IP +P V++ +A
Sbjct: 261 SKVISLICVAVWLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLA 320
Query: 303 IGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKILIEVVFGNGVDKDM 362
+G+ R++++ AI + + ++E + V+CSDKTGTLT N+++V K+ I + +D D+
Sbjct: 321 LGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFII----DRIDGDL 376
Query: 363 VILT 366
+L
Sbjct: 377 CLLN 380
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 99.4 bits (246), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 129/532 (24%), Positives = 209/532 (39%), Gaps = 95/532 (17%)
Query: 138 VLRDGKWSEEDASVLVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKNPG 197
V+RDGK + GDI+ ++ G+ IP D ++EG+ +D+S ++GE +PV K+ G
Sbjct: 137 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISGEPVPVLKSKG 195
Query: 198 DGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVESTT-HVGHFQQVLTSIGNFCXXXXX 256
D V+ + G ++ G T + LVE Q++ + +
Sbjct: 196 DEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFIPTVL 255
Query: 257 XXXXXXXXXXYGHQERGYRVGIDNLLVILIGGIP----IAMPTVLSVTMAIGSHRLSQQG 312
Y L+ +L+ P +A PT L+V M G+ + G
Sbjct: 256 LVAISAFIYWYFIAHAPLLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKGA----ELG 311
Query: 313 AITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKILIEVVFGNGVDKDMVILTAARASR 372
+ K A+E + + DKTGTLT K V ++V NG +++++ L A R
Sbjct: 312 ILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVT----DLVPLNGDERELLRLAAIAERR 367
Query: 373 LENQDAIDAAIVSMLADPKEARAEITEVHFLPFNPTDKRTALTYTDKNGKMHRASKGAPE 432
E+ I AIV + AL + + G+ + A E
Sbjct: 368 SEHP--IAEAIV--------------------------KKALEHGIELGEPEKVEVIAGE 399
Query: 433 QILN---LAWNKADIE-------KKVHSVIDKFAERGLRSLGVARQEVPAGTKDSPGGPW 482
++ L NK +E +V ++K ++ VAR G
Sbjct: 400 GVVADGILVGNKRLMEDFGVAVSNEVELALEKLEREAKTAVIVARN-----------GRV 448
Query: 483 EFIGLLPLFDPPRHDSAETIRRALDLGVSVKMITGDQLAIGKETGRRLGMGTNMYPSSAL 542
E G++ + D + + ++ +G+ V MITGD + R L +
Sbjct: 449 E--GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL---------- 496
Query: 543 LGEKKDTIVGLPVDDLIEKADGFAGVFPEHKFEIVKRLQARKHIVGMTGDGVNDAPALKV 602
DL+ A V P K E VK+LQA K +V GDG+NDAPAL
Sbjct: 497 --------------DLV-----IAEVLPHQKSEEVKKLQA-KEVVAFVGDGINDAPALAQ 536
Query: 603 ADIGIXXXXXXXXXXXXXXIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAV 654
AD+GI IVL L +++A+ SR ++K +A+
Sbjct: 537 ADLGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWAL 588
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 99.4 bits (246), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 129/532 (24%), Positives = 209/532 (39%), Gaps = 95/532 (17%)
Query: 138 VLRDGKWSEEDASVLVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKNPG 197
V+RDGK + GDI+ ++ G+ IP D ++EG+ +D+S ++GE +PV K+ G
Sbjct: 215 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISGEPVPVLKSKG 273
Query: 198 DGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVESTT-HVGHFQQVLTSIGNFCXXXXX 256
D V+ + G ++ G T + LVE Q++ + +
Sbjct: 274 DEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFIPTVL 333
Query: 257 XXXXXXXXXXYGHQERGYRVGIDNLLVILIGGIP----IAMPTVLSVTMAIGSHRLSQQG 312
Y L+ +L+ P +A PT L+V M G+ + G
Sbjct: 334 LVAISAFIYWYFIAHAPLLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKGA----ELG 389
Query: 313 AITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKILIEVVFGNGVDKDMVILTAARASR 372
+ K A+E + + DKTGTLT K V ++V NG +++++ L A R
Sbjct: 390 ILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVT----DLVPLNGDERELLRLAAIAERR 445
Query: 373 LENQDAIDAAIVSMLADPKEARAEITEVHFLPFNPTDKRTALTYTDKNGKMHRASKGAPE 432
E+ I AIV + AL + + G+ + A E
Sbjct: 446 SEHP--IAEAIV--------------------------KKALEHGIELGEPEKVEVIAGE 477
Query: 433 QILN---LAWNKADIE-------KKVHSVIDKFAERGLRSLGVARQEVPAGTKDSPGGPW 482
++ L NK +E +V ++K ++ VAR G
Sbjct: 478 GVVADGILVGNKRLMEDFGVAVSNEVELALEKLEREAKTAVIVARN-----------GRV 526
Query: 483 EFIGLLPLFDPPRHDSAETIRRALDLGVSVKMITGDQLAIGKETGRRLGMGTNMYPSSAL 542
E G++ + D + + ++ +G+ V MITGD + R L +
Sbjct: 527 E--GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL---------- 574
Query: 543 LGEKKDTIVGLPVDDLIEKADGFAGVFPEHKFEIVKRLQARKHIVGMTGDGVNDAPALKV 602
DL+ A V P K E VK+LQA K +V GDG+NDAPAL
Sbjct: 575 --------------DLV-----IAEVLPHQKSEEVKKLQA-KEVVAFVGDGINDAPALAQ 614
Query: 603 ADIGIXXXXXXXXXXXXXXIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAV 654
AD+GI IVL L +++A+ SR ++K +A+
Sbjct: 615 ADLGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWAL 666
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 68/165 (41%), Gaps = 30/165 (18%)
Query: 483 EFIGLLPLFDPPRHDSAETIRRALDLGVSVKMITGDQLAIGKETGRRLGMGTNMYPSSAL 542
E G++ L D R +S E I + +G+ M+TGD + K LG+
Sbjct: 134 EVSGVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGLD--------- 184
Query: 543 LGEKKDTIVGLPVDDLIEKADGFAGVFPEHKFEIVKRLQARKHIVGMTGDGVNDAPALKV 602
D FA V P K E VK +Q +K++ M GDGVNDAPAL
Sbjct: 185 --------------------DYFAEVLPHEKAEKVKEVQ-QKYVTAMVGDGVNDAPALAQ 223
Query: 603 ADIGIXXXXXXXXXXXXXXIVLTEPGLSVIISAVLTSRAIFQRMK 647
AD+GI IVL + + V SR + +++
Sbjct: 224 ADVGIAIGAGTDVAVETADIVLVRNDPRDVAAIVELSRKTYSKLE 268
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 126/334 (37%), Gaps = 65/334 (19%)
Query: 320 AIEEMAGMDVLCSDKTGTLTLNKLTVDKILIEVVFGNGVDKDMVILTAARASRLENQDAI 379
A E + + DKTGTLT + V ++V N + +++ + A+ +R E+ I
Sbjct: 6 AFERAKDLQAVIFDKTGTLTEGRFGV----TDIVGFNHSEDELLQIAASLEARSEH--PI 59
Query: 380 DAAIVSMLADPKEARAEITEVHFLPFNPTDKRTALTYTDKNGKMHRASKGAPEQILNLAW 439
AAIV E+ E +P + NG+ + +P I L
Sbjct: 60 AAAIVEEAEKRGFGLTEVEEFRAIPGKGVEGIV-------NGRRYMVV--SPGYIRELGI 110
Query: 440 NKADIEKKVHSVIDKFAERGLRSLGVARQEVPAGTKDSPGGPWEFIGLLPLFDPPRHDSA 499
K ++K ++G + + + E G++ L D R +S
Sbjct: 111 -------KTDESVEKLKQQGKTVVFILKN-------------GEVSGVIALADRIRPESR 150
Query: 500 ETIRRALDLGVSVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGEKKDTIVGLPVDDLI 559
E I + +G+ M+TGD + K LG+
Sbjct: 151 EAISKLKAIGIKCMMLTGDNRFVAKWVAEELGLD-------------------------- 184
Query: 560 EKADGFAGVFPEHKFEIVKRLQARKHIVGMTGDGVNDAPALKVADIGIXXXXXXXXXXXX 619
D FA V P K E VK +Q +K++ M GDGVNDAPAL AD+GI
Sbjct: 185 ---DYFAEVLPHEKAEKVKEVQ-QKYVTAMVGDGVNDAPALAQADVGIAIGAGTDVAVET 240
Query: 620 XXIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYA 653
IVL + + V SR + + + ++
Sbjct: 241 ADIVLVRNDPRDVAAIVELSRKTYSKFHGLSAWS 274
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 68/162 (41%), Gaps = 30/162 (18%)
Query: 486 GLLPLFDPPRHDSAETIRRALDLGVSVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGE 545
G++ + D + + ++ +G+ V MITGD + R L +
Sbjct: 156 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL------------- 202
Query: 546 KKDTIVGLPVDDLIEKADGFAGVFPEHKFEIVKRLQARKHIVGMTGDGVNDAPALKVADI 605
DL+ A V P K E VK+LQA K +V GDG+NDAPAL AD+
Sbjct: 203 -----------DLV-----IAEVLPHQKSEEVKKLQA-KEVVAFVGDGINDAPALAQADL 245
Query: 606 GIXXXXXXXXXXXXXXIVLTEPGLSVIISAVLTSRAIFQRMK 647
GI IVL L +++A+ SR ++K
Sbjct: 246 GIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 68/162 (41%), Gaps = 30/162 (18%)
Query: 486 GLLPLFDPPRHDSAETIRRALDLGVSVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGE 545
G++ + D + + ++ +G+ V MITGD + R L +
Sbjct: 156 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL------------- 202
Query: 546 KKDTIVGLPVDDLIEKADGFAGVFPEHKFEIVKRLQARKHIVGMTGDGVNDAPALKVADI 605
DL+ A V P K E VK+LQA K +V GDG+NDAPAL AD+
Sbjct: 203 -----------DLV-----IAEVLPHQKSEEVKKLQA-KEVVAFVGDGINDAPALAQADL 245
Query: 606 GIXXXXXXXXXXXXXXIVLTEPGLSVIISAVLTSRAIFQRMK 647
GI IVL L +++A+ SR ++K
Sbjct: 246 GIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 92/219 (42%), Gaps = 7/219 (3%)
Query: 137 KVLRDGKWSEEDASV--LVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTK 194
++ DG SEE+ S+ + GD++ ++ G+ IP D + EG +D+S +TGE +PV K
Sbjct: 229 RIKEDG--SEEEVSLDNVAVGDLLRVRPGEKIPVDGEVQEGRSF-VDESMVTGEPIPVAK 285
Query: 195 NPGDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVESTTHVGHFQQVL--TSIGNFCX 252
V + + G + G T + +V Q L T G F
Sbjct: 286 EASAKVIGATINQTGSFVMKALHVGSDTMLARIVQMVSDAQRSRAPIQRLADTVSGWFVP 345
Query: 253 XXXXXXXXXXXXXXYGHQERGYRVGIDNLLVILIGGIPIAMPTVLSVTMAIGSHRLSQQG 312
+ G+ + +LI P A+ +++ +G + +Q G
Sbjct: 346 AVILVAVLSFIVWALLGPQPALSYGLIAAVSVLIIACPCALGLATPMSIMVGVGKGAQSG 405
Query: 313 AITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKILIE 351
+ K A+E M ++ L DKTGTLT + +I+ +
Sbjct: 406 VLIKNAEALERMEKVNTLVVDKTGTLTEGHPKLTRIVTD 444
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 55/123 (44%), Gaps = 29/123 (23%)
Query: 485 IGLLPLFDPPRHDSAETIRRALDLGVSVKMITGDQLAIGKETGRRLGMGTNMYPSSALLG 544
+ LL + DP + + ETI G+ + M+TGD K T + + LG
Sbjct: 546 VALLVVEDPIKSSTPETILELQQSGIEIVMLTGDS----KRTAEAV---------AGTLG 592
Query: 545 EKKDTIVGLPVDDLIEKADGFAGVFPEHKFEIVKRLQARKHIVGMTGDGVNDAPALKVAD 604
KK A + PE K IV L+ + IV M GDGVNDAPAL AD
Sbjct: 593 IKKVV----------------AEIMPEDKSRIVSELKDKGLIVAMAGDGVNDAPALAKAD 636
Query: 605 IGI 607
IGI
Sbjct: 637 IGI 639
>pdb|2KIJ|A Chain A, Solution Structure Of The Actuator Domain Of The Copper-
Transporting Atpase Atp7a
Length = 124
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 144 WSEE--DASVLVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKNPGDGVY 201
SEE D ++ GDII + G P D R++EG + +D+S +TGE++PV K PG V
Sbjct: 32 LSEEQVDVELVQRGDIIKVVPGGKFPVDGRVIEGHSM-VDESLITGEAMPVAKKPGSTVI 90
Query: 202 SGSTCKQGEIEAVVIATGVHTFFGKAAHLVE 232
+GS + G + G T + LVE
Sbjct: 91 AGSINQNGSLLICATHVGADTTLSQIVKLVE 121
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 565 FAGVFPEHKFEIVKRLQARKHIVGMTGDGVNDAPALKVADIGIXXXXXXXXXXXXXXIVL 624
A V P K E VK+LQA K +V GDG+NDAPAL AD+GI IVL
Sbjct: 186 IAEVLPHQKSEEVKKLQA-KEVVAFVGDGINDAPALAQADLGIAVGSGSDVAVESGDIVL 244
Query: 625 TEPGLSVIISAVLTSR 640
L +++A+ SR
Sbjct: 245 IRDDLRDVVAAIQLSR 260
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain
pdb|2VOY|F Chain F, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 113
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 138 VLRDGKWSEEDASVLVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKNPG 197
V+RDGK + GDI+ ++ G+ IP D ++EG+ +D+S ++GE +PV K+ G
Sbjct: 16 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISGEPVPVLKSKG 74
Query: 198 DGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVE 232
D V+ + G ++ G T + LVE
Sbjct: 75 DEVFGATINNTGVLKIRATRVGGETLLAQIVKLVE 109
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 565 FAGVFPEHKFEIVKRLQARKHIVGMTGDGVNDAPALKVADIGI 607
A V P K E VK+LQA K +V GDG+NDAPAL AD+GI
Sbjct: 65 IAEVLPHQKSEEVKKLQA-KEVVAFVGDGINDAPALAQADLGI 106
>pdb|2O98|P Chain P, Structure Of The 14-3-3 H+-Atpase Plant Complex
pdb|2O98|Q Chain Q, Structure Of The 14-3-3 H+-Atpase Plant Complex
Length = 52
Score = 46.6 bits (109), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 910 FKDINIMXXXXXXXXXITRLRELHTLKGKVESFAKLRGLDVDHVNPHYTV 959
F ++N + I R RELHTLKG VES KL+GLD++ + Y +
Sbjct: 3 FNELNQLAEEAKRRAEIARQRELHTLKGHVESVVKLKGLDIETIQQSYDI 52
>pdb|3M50|P Chain P, Structure Of The 14-3-3PMA2 COMPLEX STABILIZED BY
EPIBESTAT
pdb|3M51|P Chain P, Structure Of The 14-3-3PMA2 COMPLEX STABILIZED BY
PYRROLIDO
pdb|4DX0|P Chain P, Structure Of The 14-3-3PMA2 COMPLEX STABILIZED BY A
PYRAZOLE Derivative
Length = 31
Score = 39.3 bits (90), Expect = 0.011, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 930 RELHTLKGKVESFAKLRGLDVDHVNPHYTV 959
RELHTLKG VE+ KL+GLD++ + Y +
Sbjct: 2 RELHTLKGHVEAVVKLKGLDIETIQQSYDI 31
>pdb|1MO7|A Chain A, Atpase
pdb|1MO8|A Chain A, Atpase
Length = 213
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 52/127 (40%), Gaps = 24/127 (18%)
Query: 392 EARAEITEVHFLPFNPTDKRTALTYTDKNGKMHR---ASKGAPEQILN------------ 436
E R + T++ +PFN T+K + + N + KGAPE+IL+
Sbjct: 87 EMREKYTKIVEIPFNSTNKYQLSIHKNPNASEPKHLLVMKGAPERILDRCSSILLHGKEQ 146
Query: 437 -LAWNKADIEKKVHSVIDKFAER--GLRSLGVARQEVPAGTK------DSPGGPWEFIGL 487
L D + + + ER G L + ++ P G + + P F+GL
Sbjct: 147 PLDEELKDAFQNAYLELGGLGERVLGFCHLLLPDEQFPEGFQFDTDEVNFPVDNLCFVGL 206
Query: 488 LPLFDPP 494
+ + DPP
Sbjct: 207 ISMIDPP 213
>pdb|1IG8|A Chain A, Crystal Structure Of Yeast Hexokinase Pii With The Correct
Amino Acid Sequence
Length = 486
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 311 QGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKILIEVVFGNGVD 359
Q ITKR IE +A L +D TGTL + T + + V+FG GV+
Sbjct: 193 QKQITKRNIPIEVVA----LINDTTGTLVASYYTDPETKMGVIFGTGVN 237
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 30.0 bits (66), Expect = 5.7, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 542 LLGEKKDTIVGLPVDDLIEKADGFAGVFPEHKFEIVKRLQARKHIVGMTGDGVN 595
L G+K+D + L + I++ ++ + PE K I+++L+ + V M GDGVN
Sbjct: 158 LSGDKEDKVKELSKELNIQEY--YSNLSPEDKVRIIEKLKQNGNKVLMIGDGVN 209
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 30.0 bits (66), Expect = 5.8, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 542 LLGEKKDTIVGLPVDDLIEKADGFAGVFPEHKFEIVKRLQARKHIVGMTGDGVN 595
L G+K+D + L + I++ ++ + PE K I+++L+ + V M GDGVN
Sbjct: 158 LSGDKEDKVKELSKELNIQEY--YSNLSPEDKVRIIEKLKQNGNKVLMIGDGVN 209
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 30.0 bits (66), Expect = 5.8, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 542 LLGEKKDTIVGLPVDDLIEKADGFAGVFPEHKFEIVKRLQARKHIVGMTGDGVN 595
L G+K+D + L + I++ ++ + PE K I+++L+ + V M GDGVN
Sbjct: 158 LSGDKEDKVKELSKELNIQEY--YSNLSPEDKVRIIEKLKQNGNKVLMIGDGVN 209
>pdb|2P1G|A Chain A, Crystal Structure Of A Putative Xylanase From Bacteroides
Fragilis
pdb|2P1G|B Chain B, Crystal Structure Of A Putative Xylanase From Bacteroides
Fragilis
Length = 249
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 405 FNPTDKRTALTYTDKNGKMHRASKGAPEQILNLA-WNKADIEKKVHSV-IDKFAERGLRS 462
++P ++ +L+Y + +++++ K +PE + +A + KA K+VH + DK GL
Sbjct: 112 YSPFKQKLSLSYMSTHPELYKSLKNSPENVAQMAKYEKALSGKEVHYLPKDKLEPDGLP- 170
Query: 463 LGVARQEVPAGTKDSPG 479
+ ++ A T ++PG
Sbjct: 171 -WIKNGDIIALTTNTPG 186
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,694,930
Number of Sequences: 62578
Number of extensions: 1005623
Number of successful extensions: 2147
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2032
Number of HSP's gapped (non-prelim): 62
length of query: 959
length of database: 14,973,337
effective HSP length: 108
effective length of query: 851
effective length of database: 8,214,913
effective search space: 6990890963
effective search space used: 6990890963
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)