Query 002152
Match_columns 959
No_of_seqs 778 out of 3792
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 14:33:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002152.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002152hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eho_A Bacteriophytochrome, PA 100.0 3E-117 1E-121 1070.8 46.6 614 61-741 14-635 (635)
2 3zq5_A Phytochrome-like protei 100.0 5E-113 2E-117 983.6 39.6 493 76-587 8-510 (520)
3 3nhq_A Bacteriophytochrome; ph 100.0 2E-110 8E-115 959.7 50.0 478 58-583 3-491 (505)
4 4e04_A Bacteriophytochrome (li 100.0 7.7E-82 2.6E-86 680.6 33.3 306 60-399 8-315 (327)
5 3s7o_A Bacteriophytochrome; bi 100.0 1.2E-81 4.2E-86 679.5 32.7 304 57-402 28-336 (343)
6 2ool_A Sensor protein; bacteri 100.0 2.6E-78 9E-83 662.3 35.7 306 61-400 22-329 (337)
7 4glq_A Methyl-accepting chemot 100.0 3.5E-35 1.2E-39 295.1 17.2 152 220-399 3-155 (171)
8 2k2n_A Sensor protein, SYB-CPH 100.0 1.5E-28 5.3E-33 247.4 16.6 164 231-398 1-167 (172)
9 2lb5_A Sensor histidine kinase 99.9 3.4E-27 1.2E-31 245.2 17.7 183 211-399 13-198 (208)
10 3ewk_A Sensor protein; PAS dom 99.9 8.8E-26 3E-30 237.8 27.2 221 630-870 1-227 (227)
11 4f3l_A Mclock, circadian locom 99.8 7.5E-19 2.6E-23 197.9 16.6 239 619-878 87-360 (361)
12 4f3l_B BMAL1B; BHLH, PAS, circ 99.8 3.9E-18 1.3E-22 193.6 18.1 234 621-876 89-386 (387)
13 3mr0_A Sensory box histidine k 99.7 9.7E-17 3.3E-21 155.0 14.9 138 611-753 2-141 (142)
14 3a0r_A Sensor protein; four he 99.6 9.1E-17 3.1E-21 180.0 8.1 190 744-953 3-195 (349)
15 3mr0_A Sensory box histidine k 99.6 1E-15 3.4E-20 147.8 13.5 137 742-887 2-138 (142)
16 3p7n_A Sensor histidine kinase 99.6 1.3E-15 4.5E-20 163.0 14.5 193 715-918 23-238 (258)
17 3rty_A Period circadian protei 99.6 5.1E-15 1.7E-19 163.6 16.1 222 630-873 5-263 (339)
18 2pr5_A Blue-light photorecepto 99.6 1.3E-14 4.5E-19 137.7 14.7 127 621-754 2-131 (132)
19 2gj3_A Nitrogen fixation regul 99.6 1.8E-14 6.1E-19 134.3 13.8 117 748-875 4-120 (120)
20 2gj3_A Nitrogen fixation regul 99.6 1.7E-14 5.9E-19 134.4 13.3 116 618-738 5-120 (120)
21 3f1p_B ARYL hydrocarbon recept 99.6 1.6E-14 5.4E-19 134.7 12.0 114 752-876 5-120 (121)
22 4hia_A LOV protein; PAS, HTH, 99.6 5.5E-15 1.9E-19 147.6 9.4 136 617-757 6-145 (176)
23 3p7n_A Sensor histidine kinase 99.6 7.5E-15 2.6E-19 157.1 10.9 175 608-794 53-232 (258)
24 3f1p_B ARYL hydrocarbon recept 99.5 1.6E-14 5.5E-19 134.6 10.7 115 620-739 4-120 (121)
25 3ue6_A Aureochrome1; PAS/LOV d 99.5 1.8E-14 6.3E-19 141.6 11.2 133 607-744 24-159 (166)
26 3k3c_A Protein RV1364C/MT1410; 99.5 6.6E-14 2.3E-18 136.9 14.6 138 617-758 16-156 (158)
27 3nja_A Probable ggdef family p 99.5 3.9E-14 1.3E-18 131.2 11.6 122 613-739 2-125 (125)
28 3f1p_A Endothelial PAS domain- 99.5 3.6E-14 1.2E-18 131.3 11.1 106 764-877 11-117 (117)
29 3nja_A Probable ggdef family p 99.5 6E-14 2.1E-18 129.9 11.7 124 744-876 2-125 (125)
30 4dj3_A Period circadian protei 99.5 2.8E-13 9.6E-18 148.1 18.6 224 623-870 31-278 (317)
31 2pr5_A Blue-light photorecepto 99.5 1.2E-13 4.1E-18 131.0 13.6 122 753-887 3-127 (132)
32 3ue6_A Aureochrome1; PAS/LOV d 99.5 4.2E-14 1.4E-18 139.0 10.5 135 735-880 21-158 (166)
33 4hia_A LOV protein; PAS, HTH, 99.5 1.4E-13 4.9E-18 137.2 14.3 123 747-880 5-130 (176)
34 3t50_A Blue-light-activated hi 99.5 8.8E-14 3E-18 130.2 11.7 123 623-750 2-127 (128)
35 4dj2_A Period circadian protei 99.5 7.4E-13 2.5E-17 145.0 19.0 226 623-873 31-282 (320)
36 3kx0_X Uncharacterized protein 99.5 5.9E-14 2E-18 142.1 9.1 141 615-760 34-182 (185)
37 3h9w_A Diguanylate cyclase wit 99.5 2E-13 6.7E-18 125.9 11.8 110 763-879 4-114 (115)
38 3f1p_A Endothelial PAS domain- 99.5 6.9E-14 2.4E-18 129.3 8.5 108 627-739 8-116 (117)
39 1d06_A Nitrogen fixation regul 99.5 4E-13 1.4E-17 127.0 13.7 125 735-872 2-130 (130)
40 3bwl_A Sensor protein; structu 99.4 1.3E-12 4.4E-17 122.2 15.2 124 733-872 1-126 (126)
41 3h9w_A Diguanylate cyclase wit 99.4 2.6E-13 8.9E-18 125.1 10.0 112 627-742 2-114 (115)
42 3sw1_A Sensory box protein; li 99.4 5.2E-13 1.8E-17 130.6 12.8 130 618-752 25-157 (162)
43 3gdi_A Period circadian protei 99.4 2E-12 6.9E-17 140.9 18.6 227 622-872 19-270 (309)
44 1d06_A Nitrogen fixation regul 99.4 7.2E-13 2.5E-17 125.2 11.9 123 606-735 4-130 (130)
45 3mxq_A Sensor protein; PSI2, M 99.4 3.9E-13 1.3E-17 131.3 9.9 130 610-741 14-151 (152)
46 3icy_A Sensor protein; sensory 99.4 8.5E-13 2.9E-17 121.2 11.7 117 747-872 2-118 (118)
47 1n9l_A PHOT-LOV1, putative blu 99.4 1.4E-12 4.8E-17 119.5 12.4 103 763-873 4-109 (109)
48 3t50_A Blue-light-activated hi 99.4 1.1E-12 3.8E-17 122.6 11.4 116 755-881 3-121 (128)
49 3luq_A Sensor protein; PAS, hi 99.4 1.7E-12 5.8E-17 118.0 12.4 112 618-735 3-114 (114)
50 2v0u_A NPH1-1, LOV2; kinase, t 99.4 1.5E-12 5.1E-17 123.1 12.4 134 620-759 4-140 (146)
51 2vv6_A FIXL, sensor protein FI 99.4 1.7E-12 5.7E-17 120.5 12.4 114 626-746 1-118 (119)
52 3lyx_A Sensory BOX/ggdef domai 99.4 2.1E-12 7.1E-17 118.1 12.7 119 616-739 5-123 (124)
53 4eet_B Phototropin-2; LOV, blu 99.4 2.6E-12 8.8E-17 116.8 12.6 111 623-738 2-115 (115)
54 2z6d_A Phototropin-2; PAS-fold 99.4 3.5E-12 1.2E-16 117.4 13.2 123 616-743 4-129 (130)
55 3mqq_A Transcriptional regulat 99.4 7.5E-13 2.6E-17 123.0 8.3 115 619-740 4-119 (120)
56 2r78_A Sensor protein; sensory 99.4 4.5E-12 1.6E-16 117.6 13.6 114 611-735 4-117 (117)
57 3eeh_A Putative light and redo 99.4 2.9E-12 1E-16 117.7 11.9 124 739-872 1-125 (125)
58 3lyx_A Sensory BOX/ggdef domai 99.4 5.7E-12 1.9E-16 115.1 13.6 120 746-876 4-123 (124)
59 4eet_B Phototropin-2; LOV, blu 99.4 7.1E-12 2.4E-16 113.9 14.1 110 755-875 3-115 (115)
60 3k3c_A Protein RV1364C/MT1410; 99.4 1.7E-12 5.9E-17 126.7 10.2 126 745-883 13-144 (158)
61 3eeh_A Putative light and redo 99.4 2E-12 6.8E-17 118.8 9.9 121 609-735 2-125 (125)
62 2v0u_A NPH1-1, LOV2; kinase, t 99.3 8.7E-12 3E-16 117.7 14.5 117 751-878 4-123 (146)
63 3icy_A Sensor protein; sensory 99.3 1.9E-12 6.5E-17 118.8 9.6 115 616-735 2-118 (118)
64 3ewk_A Sensor protein; PAS dom 99.3 7.9E-12 2.7E-16 130.8 15.5 111 765-883 2-112 (227)
65 1n9l_A PHOT-LOV1, putative blu 99.3 4.9E-12 1.7E-16 115.8 12.1 105 627-736 2-109 (109)
66 3mqq_A Transcriptional regulat 99.3 2.1E-12 7.1E-17 120.0 9.5 116 750-877 4-119 (120)
67 3sw1_A Sensory box protein; li 99.3 2.7E-12 9.3E-17 125.5 10.8 128 748-886 24-154 (162)
68 2vv6_A FIXL, sensor protein FI 99.3 6E-12 2E-16 116.7 12.6 110 763-882 4-117 (119)
69 2z6d_A Phototropin-2; PAS-fold 99.3 9.3E-12 3.2E-16 114.5 13.7 124 746-880 3-129 (130)
70 2r78_A Sensor protein; sensory 99.3 1.1E-11 3.8E-16 114.9 13.2 113 743-872 5-117 (117)
71 3luq_A Sensor protein; PAS, hi 99.3 7.4E-12 2.5E-16 113.7 11.8 113 748-872 2-114 (114)
72 1v9y_A Heme PAS sensor protein 99.3 4.9E-12 1.7E-16 123.7 11.2 137 603-746 25-165 (167)
73 3mxq_A Sensor protein; PSI2, M 99.3 5.8E-12 2E-16 123.0 11.1 124 742-877 15-150 (152)
74 3p01_A Two-component response 99.3 4.4E-11 1.5E-15 120.7 17.5 152 211-398 27-179 (184)
75 1v9y_A Heme PAS sensor protein 99.3 1.1E-11 3.8E-16 121.1 10.9 142 729-883 20-165 (167)
76 3mjq_A Uncharacterized protein 99.3 6E-12 2E-16 116.8 8.3 120 621-748 2-121 (126)
77 2wkq_A NPH1-1, RAS-related C3 99.3 3.2E-11 1.1E-15 133.9 15.6 118 753-881 15-135 (332)
78 3bwl_A Sensor protein; structu 99.3 2.3E-11 8E-16 113.5 12.2 121 605-735 4-126 (126)
79 2wkq_A NPH1-1, RAS-related C3 99.3 2.4E-11 8.1E-16 134.9 14.2 120 622-746 15-137 (332)
80 2kdk_A ARYL hydrocarbon recept 99.3 2E-11 6.8E-16 113.1 10.8 112 622-738 7-120 (121)
81 2kdk_A ARYL hydrocarbon recept 99.2 2.8E-11 9.7E-16 112.0 11.5 111 754-875 8-120 (121)
82 3kx0_X Uncharacterized protein 99.2 7.5E-12 2.6E-16 126.4 5.3 123 745-880 33-161 (185)
83 3vol_A Aerotaxis transducer AE 99.2 8.8E-11 3E-15 123.5 12.3 121 748-889 21-153 (233)
84 2zmf_A CAMP and CAMP-inhibited 99.2 5.4E-10 1.9E-14 112.3 17.6 156 214-399 13-177 (189)
85 3olo_A Two-component sensor hi 99.2 7.4E-11 2.5E-15 108.0 10.3 111 613-735 8-118 (118)
86 3mjq_A Uncharacterized protein 99.2 5.4E-11 1.8E-15 110.2 9.0 117 752-882 2-118 (126)
87 4eho_A Bacteriophytochrome, PA 99.2 8.4E-12 2.9E-16 150.5 4.3 118 749-878 518-635 (635)
88 3vol_A Aerotaxis transducer AE 99.2 1.9E-10 6.6E-15 120.9 14.2 150 617-795 21-183 (233)
89 3olo_A Two-component sensor hi 99.1 2.4E-10 8.4E-15 104.5 10.2 112 743-872 7-118 (118)
90 1byw_A Protein (human ERG pota 99.1 7.8E-10 2.7E-14 98.3 12.8 104 764-874 3-110 (110)
91 2l0w_A Potassium voltage-gated 99.1 7.6E-10 2.6E-14 103.2 13.2 114 620-737 21-138 (138)
92 3oov_A Methyl-accepting chemot 99.1 3.3E-09 1.1E-13 104.3 17.9 157 218-399 6-163 (169)
93 2l0w_A Potassium voltage-gated 99.1 1.4E-09 4.8E-14 101.3 14.1 112 753-874 23-138 (138)
94 3fc7_A HTR-like protein, senso 99.1 7.2E-11 2.4E-15 109.5 5.0 108 616-735 17-125 (125)
95 3k2n_A Sigma-54-dependent tran 99.1 5.6E-09 1.9E-13 103.8 18.8 160 213-399 5-167 (177)
96 3trc_A Phosphoenolpyruvate-pro 99.1 5.5E-09 1.9E-13 103.0 18.5 158 211-399 5-162 (171)
97 2qkp_A Uncharacterized protein 99.0 3.8E-10 1.3E-14 110.0 8.6 123 618-748 19-144 (151)
98 3ci6_A Phosphoenolpyruvate-pro 99.0 1.4E-08 4.7E-13 99.5 20.0 155 213-398 9-163 (171)
99 1byw_A Protein (human ERG pota 99.0 1.9E-09 6.5E-14 95.7 12.5 105 629-737 2-110 (110)
100 3e0y_A Conserved domain protei 99.0 5.6E-09 1.9E-13 103.8 17.3 151 216-399 17-167 (181)
101 2qyb_A Membrane protein, putat 99.0 3.5E-09 1.2E-13 106.0 15.1 143 228-399 15-159 (181)
102 3mfx_A Sensory BOX/ggdef famil 99.0 8.7E-10 3E-14 104.5 9.2 110 618-735 7-123 (129)
103 1ykd_A Adenylate cyclase; GAF 99.0 7.1E-08 2.4E-12 109.7 26.3 323 214-589 9-378 (398)
104 4hi4_A Aerotaxis transducer AE 99.0 3.6E-09 1.2E-13 98.5 12.7 105 618-737 5-121 (121)
105 2vlg_A Sporulation kinase A; h 99.0 1.4E-09 4.6E-14 100.2 9.5 94 622-723 3-96 (111)
106 2e4s_A CAMP and CAMP-inhibited 99.0 8.3E-09 2.9E-13 103.7 16.3 158 212-399 11-177 (189)
107 4f3l_A Mclock, circadian locom 99.0 6.2E-10 2.1E-14 125.0 8.6 109 628-741 251-360 (361)
108 3d72_A Vivid PAS protein VVD; 99.0 2.5E-09 8.6E-14 102.7 11.8 122 729-870 14-149 (149)
109 4f3l_B BMAL1B; BHLH, PAS, circ 99.0 9.6E-10 3.3E-14 124.5 10.0 108 627-739 277-386 (387)
110 3fg8_A Uncharacterized protein 99.0 2.3E-10 7.7E-15 106.2 3.4 113 612-737 6-118 (118)
111 2vlg_A Sporulation kinase A; h 99.0 2.4E-09 8.4E-14 98.4 10.2 95 753-861 3-97 (111)
112 3d72_A Vivid PAS protein VVD; 98.9 2.7E-09 9.2E-14 102.5 10.7 105 623-733 31-149 (149)
113 3ibj_A CGMP-dependent 3',5'-cy 98.9 8.3E-08 2.9E-12 117.3 26.0 203 213-451 14-222 (691)
114 3hcy_A Putative two-component 98.9 4.9E-09 1.7E-13 101.5 11.4 139 228-399 1-140 (151)
115 3mfx_A Sensory BOX/ggdef famil 98.9 2.7E-09 9.2E-14 101.0 8.8 110 749-872 7-123 (129)
116 3fc7_A HTR-like protein, senso 98.9 1.8E-09 6.1E-14 99.8 6.8 108 747-872 17-125 (125)
117 4hi4_A Aerotaxis transducer AE 98.9 1.6E-08 5.3E-13 94.1 12.1 105 749-874 5-121 (121)
118 1mc0_A 3',5'-cyclic nucleotide 98.8 3.4E-08 1.2E-12 110.9 17.1 203 214-451 14-222 (368)
119 3b33_A Sensor protein; structu 98.8 9.3E-09 3.2E-13 93.9 9.8 105 621-735 10-115 (115)
120 2qkp_A Uncharacterized protein 98.8 1.4E-08 4.8E-13 98.8 11.2 118 749-880 19-139 (151)
121 2ykf_A Pdtas, probable sensor 98.3 5.6E-10 1.9E-14 122.0 0.0 170 710-901 111-305 (305)
122 3o5y_A Sensor protein; GAF dom 98.8 1.4E-07 4.7E-12 93.3 16.6 139 229-399 4-144 (165)
123 3fg8_A Uncharacterized protein 98.8 3E-09 1E-13 98.5 4.0 111 745-874 8-118 (118)
124 2w0n_A Sensor protein DCUS; si 98.8 5E-09 1.7E-13 95.5 4.9 108 610-735 7-118 (118)
125 3a0r_A Sensor protein; four he 98.7 2.4E-09 8.2E-14 119.3 1.3 121 614-746 4-125 (349)
126 1ll8_A PAS kinase; PAS domain, 98.7 9.4E-09 3.2E-13 94.0 4.9 103 626-735 6-113 (114)
127 1ll8_A PAS kinase; PAS domain, 98.7 2.2E-08 7.7E-13 91.5 7.4 100 763-872 9-113 (114)
128 3cax_A Uncharacterized protein 98.7 4.2E-08 1.4E-12 110.2 11.0 114 618-742 239-352 (369)
129 1mc0_A 3',5'-cyclic nucleotide 98.7 6.2E-07 2.1E-11 100.5 20.1 150 217-399 184-338 (368)
130 3b33_A Sensor protein; structu 98.6 6.3E-08 2.2E-12 88.3 8.8 105 752-872 10-115 (115)
131 2vjw_A GAF-B, GAF family prote 98.6 9.9E-07 3.4E-11 85.5 16.3 130 230-399 1-135 (149)
132 4dj3_A Period circadian protei 98.6 1.4E-07 4.7E-12 103.0 11.0 123 629-756 175-314 (317)
133 2w3g_A DOSS, two component sen 98.5 3.1E-07 1.1E-11 88.3 11.1 141 228-399 4-146 (153)
134 2w0n_A Sensor protein DCUS; si 98.5 5.5E-08 1.9E-12 88.3 5.3 108 742-872 8-118 (118)
135 1ykd_A Adenylate cyclase; GAF 98.5 1.5E-06 5.3E-11 98.5 18.4 142 228-399 212-377 (398)
136 2jhe_A Transcription regulator 98.5 1.1E-07 3.8E-12 95.8 7.5 110 614-738 76-189 (190)
137 3a0s_A Sensor protein; PAS-fol 98.5 5.9E-07 2E-11 77.2 10.6 95 627-733 1-96 (96)
138 4fpp_A Phosphotransferase; fou 98.5 1.5E-07 5E-12 99.7 7.3 84 858-946 17-100 (247)
139 2c2a_A Sensor histidine kinase 98.4 1.2E-07 4E-12 100.9 5.7 84 869-957 2-89 (258)
140 3rty_A Period circadian protei 98.4 4.6E-07 1.6E-11 99.9 10.2 105 628-737 154-264 (339)
141 3cax_A Uncharacterized protein 98.4 3.6E-07 1.2E-11 102.6 9.0 113 749-878 239-351 (369)
142 1nwz_A PYP, photoactive yellow 98.4 9E-07 3.1E-11 82.0 10.0 102 621-729 20-122 (125)
143 1mzu_A PPR; photoactive yellow 98.4 1.2E-06 4E-11 81.4 10.0 100 623-729 27-127 (129)
144 3ibj_A CGMP-dependent 3',5'-cy 98.4 3.1E-06 1.1E-10 103.3 16.7 140 229-399 195-338 (691)
145 3dba_A CONE CGMP-specific 3',5 98.3 6.1E-06 2.1E-10 82.5 15.2 154 213-396 6-171 (180)
146 3a0s_A Sensor protein; PAS-fol 98.3 1.7E-06 5.8E-11 74.3 8.9 93 763-870 3-96 (96)
147 1nwz_A PYP, photoactive yellow 98.3 1.9E-06 6.7E-11 79.7 9.3 101 752-865 20-121 (125)
148 3mmh_A FRMSR, methionine-R-sul 98.3 6E-05 2.1E-09 74.1 20.5 146 213-397 15-161 (167)
149 1mzu_A PPR; photoactive yellow 98.3 2.7E-06 9.2E-11 78.9 9.6 100 753-865 26-126 (129)
150 2ykf_A Pdtas, probable sensor 97.6 1.2E-07 4.2E-12 103.3 0.0 121 622-754 174-303 (305)
151 2jhe_A Transcription regulator 98.2 1.2E-06 4E-11 88.2 7.1 107 747-875 78-189 (190)
152 4dj2_A Period circadian protei 98.2 3E-06 1E-10 92.5 10.4 104 628-736 176-282 (320)
153 3gdi_A Period circadian protei 98.2 4.2E-06 1.4E-10 91.0 11.4 103 629-736 166-271 (309)
154 3bjc_A CGMP-specific 3',5'-cyc 98.2 1.8E-07 6.1E-12 117.1 0.0 156 214-399 153-320 (878)
155 4ew8_A Sensor protein DIVL; si 98.0 1.3E-05 4.6E-10 85.2 9.1 74 884-957 32-107 (268)
156 1vhm_A Protein YEBR; structura 97.9 0.00063 2.1E-08 68.5 18.7 142 215-397 30-172 (195)
157 3ksh_A Putative uncharacterize 97.8 0.00073 2.5E-08 65.6 16.5 130 228-396 29-159 (160)
158 1f5m_A GAF; CGMP binding, sign 97.7 0.00043 1.5E-08 69.0 14.9 132 228-395 39-176 (180)
159 3rfb_A Putative uncharacterize 97.6 0.0024 8.2E-08 62.6 16.8 143 213-395 16-159 (171)
160 3d36_A Sporulation kinase B; G 97.5 5.4E-05 1.9E-09 79.0 5.0 67 890-956 12-80 (244)
161 1gkz_A [3-methyl-2-oxobutanoat 97.5 0.00011 3.9E-09 82.9 7.1 68 890-957 119-188 (388)
162 3zcc_A HAMP, osmolarity sensor 97.3 0.00029 9.7E-09 63.7 6.8 59 886-949 54-113 (114)
163 3jz3_A Sensor protein QSEC; he 97.2 1.4E-05 4.9E-10 82.2 -4.3 65 892-956 2-68 (222)
164 3cit_A Sensor histidine kinase 97.0 0.0071 2.4E-07 57.9 13.0 134 212-399 13-148 (160)
165 3bjc_A CGMP-specific 3',5'-cyc 97.0 9.4E-05 3.2E-09 92.5 0.0 142 229-399 348-509 (878)
166 2btz_A Pyruvate dehydrogenase 96.5 0.0016 5.6E-08 73.4 5.2 59 894-954 97-167 (394)
167 1oj5_A Steroid receptor coacti 96.5 0.003 1E-07 58.1 5.7 100 765-873 10-114 (132)
168 3zrx_A AF1503 protein, osmolar 96.3 0.008 2.8E-07 53.8 7.6 58 889-951 57-115 (115)
169 1oj5_A Steroid receptor coacti 96.3 0.003 1E-07 58.1 4.2 97 629-731 8-109 (132)
170 2e0a_A Pyruvate dehydrogenase 96.2 0.0063 2.2E-07 68.6 7.6 61 893-956 96-169 (394)
171 2q8g_A [pyruvate dehydrogenase 95.8 0.01 3.5E-07 67.1 6.7 59 894-954 107-177 (407)
172 1y8o_A [pyruvate dehydrogenase 93.8 0.066 2.2E-06 60.7 6.5 55 896-952 121-187 (419)
173 3eea_A GAF domain/HD domain pr 93.0 4 0.00014 37.3 15.1 139 230-399 13-157 (162)
174 3ehh_A Sensor kinase (YOCF pro 91.6 0.25 8.4E-06 49.9 6.6 57 890-946 26-84 (218)
175 3szt_A QCSR, quorum-sensing co 87.3 12 0.00041 38.1 15.6 145 219-393 8-153 (237)
176 2ool_A Sensor protein; bacteri 86.9 5.5 0.00019 43.1 13.1 78 765-851 45-124 (337)
177 4dah_A Sporulation kinase D; a 85.5 8.1 0.00028 38.4 13.0 125 614-780 54-180 (217)
178 1b3q_A Protein (chemotaxis pro 84.1 0.42 1.4E-05 53.2 2.6 50 890-950 8-58 (379)
179 2w1r_A Spovt, stage V sporulat 80.1 2.6 8.8E-05 38.5 5.9 120 234-397 3-122 (123)
180 3qp6_A CVIR transcriptional re 75.7 53 0.0018 33.9 15.4 132 213-371 21-158 (265)
181 1p0z_A Sensor kinase CITA; tra 73.7 10 0.00036 34.5 8.3 77 763-873 51-127 (131)
182 3qp1_A CVIR transcriptional re 67.5 90 0.0031 30.0 16.1 144 216-388 19-169 (182)
183 3lif_A Putative diguanylate cy 65.9 88 0.003 31.3 14.5 57 709-779 126-183 (254)
184 3e4o_A C4-dicarboxylate transp 64.5 37 0.0013 36.0 11.3 119 618-779 102-221 (305)
185 4dah_A Sporulation kinase D; a 63.6 19 0.00066 35.5 8.5 31 840-872 120-150 (217)
186 3e98_A GAF domain of unknown f 62.9 1E+02 0.0036 31.5 14.0 133 217-397 106-242 (252)
187 1ixm_A SPO0B, protein (sporula 58.2 20 0.00069 35.3 7.2 45 894-942 23-67 (192)
188 3by8_A Sensor protein DCUS; hi 57.8 29 0.00098 32.0 7.9 25 848-872 107-131 (142)
189 1p0z_A Sensor kinase CITA; tra 56.4 33 0.0011 31.0 8.0 77 629-736 51-127 (131)
190 4eu0_A PELD; C-DI-GMP, signali 54.0 1.4E+02 0.0047 31.4 13.1 125 231-398 24-152 (298)
191 2q0o_A Probable transcriptiona 51.4 1.8E+02 0.006 29.1 13.5 119 221-372 11-135 (236)
192 3nhq_A Bacteriophytochrome; ph 50.2 6.9 0.00023 44.8 2.6 40 216-257 322-361 (505)
193 4ew7_A Conjugative transfer: r 45.2 1.5E+02 0.0051 25.5 11.6 40 619-658 21-60 (127)
194 3by8_A Sensor protein DCUS; hi 38.0 39 0.0013 31.1 5.4 24 714-737 110-133 (142)
195 3clo_A Transcriptional regulat 38.0 2.3E+02 0.008 28.6 12.0 48 765-816 46-98 (258)
196 3lif_A Putative diguanylate cy 33.8 1.6E+02 0.0055 29.3 9.9 29 841-871 123-151 (254)
197 1l3l_A Transcriptional activat 33.7 3.3E+02 0.011 26.9 12.2 119 221-372 9-133 (234)
198 4e04_A Bacteriophytochrome (li 32.2 20 0.00068 38.4 2.5 46 630-676 31-76 (327)
199 3e4o_A C4-dicarboxylate transp 29.5 1.6E+02 0.0056 30.9 9.2 81 763-872 114-194 (305)
200 3s7o_A Bacteriophytochrome; bi 22.6 36 0.0012 36.6 2.4 44 631-676 55-99 (343)
201 2hl0_A Threonyl-tRNA synthetas 22.6 83 0.0028 29.0 4.4 28 230-257 52-82 (143)
202 3lid_A Putative sensory BOX/gg 21.9 77 0.0026 33.2 4.8 106 747-872 65-175 (295)
203 3lid_A Putative sensory BOX/gg 21.4 2E+02 0.0067 29.9 7.9 57 708-779 149-205 (295)
204 4ew7_A Conjugative transfer: r 20.4 4.1E+02 0.014 22.9 11.8 36 748-786 19-54 (127)
No 1
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=100.00 E-value=2.8e-117 Score=1070.85 Aligned_cols=614 Identities=28% Similarity=0.430 Sum_probs=540.8
Q ss_pred CcccccccCCCCCCCChhhHHHHHhhccCCCCCCccceEEEEeCCCceEEEEecChhhhhCCCCcccccccccccCCccc
Q 002152 61 SFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGLIGIDAR 140 (959)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~iQp~G~ll~~~~~~~~i~~~S~N~~~~lg~~~~~~~~~~~~~~g~~~~ 140 (959)
.+|.++|.++| ||+||+|||||||||+|+++++|++||+|++++||.++ ++|+++.
T Consensus 14 ~~dl~~C~~Ep---------------Ih~pg~IQp~G~Ll~~~~~~~~i~~~S~N~~~~lg~~~---------~lg~~l~ 69 (635)
T 4eho_A 14 TADLSNCEREE---------------IHLAGSIQPHGALLVVSEPDHRIIQASANAAEFLNLGS---------VLGVPLA 69 (635)
T ss_dssp CCCTTTTTSCB---------------CSSCSEECTTEEEEEECTTTCBEEEEETTHHHHHTCSC---------CSSCBSS
T ss_pred CCcCccccccc---------------ccCcCcccCCeEEEEEECCCCeEEEEeCcHHhhhCcHh---------hhCCCHH
Confidence 57888998888 99999999999999999999999999999999999843 8999999
Q ss_pred cccCCchHHHHHHHHhcccccccCcceeeccCCCCCcceEEEEEee-CCEEEEEeccCCCCCCcchhhhHHHHHHHHHHH
Q 002152 141 TLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRI-DVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSA 219 (959)
Q Consensus 141 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~~~~~~E~Ep~~~~~~~~~~~~~~~~~~~~~~~ 219 (959)
+++++...+.+.... ......|..+++.....++.|++++||. ++.+|+||||..+... . +.++..+
T Consensus 70 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~hr~~~~~li~elE~~~~~~~---~------~~~~~~~ 137 (635)
T 4eho_A 70 EIDGDLLIKILPHLD---PTAEGMPVAVRCRIGNPSTEYDGLMHRPPEGGLIIELERAGPPID---L------SGTLAPA 137 (635)
T ss_dssp SSSSSHHHHHGGGCC---SSSCCCSCEEEEEETTTTEEEEEECCCCSSSSEEEEEECCCSCCC---C------CTTSSSH
T ss_pred HHcchHHHHHHhhhh---hhccCCceeEEEEecCCCceEEEEEEEcCCCEEEEEEEECCCchh---H------HHHHHHH
Confidence 999986665554321 1223456666664456678999999995 5789999999865321 1 2234578
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCCccCCccCCCCchHHHHHHHHhCCE
Q 002152 220 ISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRV 299 (959)
Q Consensus 220 ~~~l~~~~~~~l~~~~~~~v~~vr~~~g~DRv~iY~F~~d~~G~viaE~~~~~~~s~lg~~~pa~dip~~ar~ly~~~~~ 299 (959)
++||++ +.|+++||+++|++||++|||||||||||++||+|+||||++.++|+||||+|||++|||+++|++|++|++
T Consensus 138 ~~~i~~--s~~l~~i~~~~v~evr~l~~~DRv~iy~F~~d~~G~vvaE~~~~~~~s~lg~~~p~~dip~~~r~ly~~~~~ 215 (635)
T 4eho_A 138 LERIRT--AGSLRALCDDTALLFQQCTGYDRVMVYRFDEQGHGEVFSERHVPGLESYFGNRYPSSDIPQMARRLYERQRV 215 (635)
T ss_dssp HHHHHH--CCSHHHHHHHHHHHHHHHSCCSEEEEEEECTTCCEEEEEEECCTTCCCCTTCEECSTTSCHHHHHHHHHSCE
T ss_pred HHHHHh--hCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCEEEEEEEcCCCCccccCCccCCcchHHHHHHHHHcCCe
Confidence 999999 889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCccccc--ccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEeecCCCCCC
Q 002152 300 RMICDCHAIPVMVIQ--SKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYI 377 (959)
Q Consensus 300 r~i~d~~~~~~~l~~--~~~~~~~ldls~s~lRsvsp~h~~yl~nmgv~asl~v~i~~~~~~~~~LWGLi~~hh~~pr~~ 377 (959)
|+|+|++++|+||+| ++.+++|+|||+|+||++||||+|||+||||+|||+|||++++ +|||||+||||+||+|
T Consensus 216 r~i~d~~~~~v~~~~~~~~~~~~~ldl~~~~~r~~sp~h~~yl~~~~v~asl~vpi~~~~----~LWGLl~~h~~~pr~~ 291 (635)
T 4eho_A 216 RVLVDVSYQPVPLEPRLSPLTGRDLDMSGCFLRSMSPIHLQYLKNMGVRATLVVSLVVGG----KLWGLVACHHYLPRFI 291 (635)
T ss_dssp EEESCSSCCCEEEESSBCTTTSSBCCGGGCTTBCCCHHHHHHHHHHTCCEEEEEEEEETT----EEEEEEEEEESSCCCC
T ss_pred EEEecccCCccccccCcCcccCCccccccceecCCCHHHHHHHHhhCcceEEEEEEEEcc----eeeeeeeeecCCCCcC
Confidence 999999999999987 5778999999999999999999999999999999999999999 9999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC--CcccccCCchhhhhccCCeEEEEECCeEE
Q 002152 378 PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA--PFSIVTQSPSIMDLVKCDGAALYYGGRCW 455 (959)
Q Consensus 378 ~~~~r~~~~~l~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~l~~a~g~a~~~~~~~~ 455 (959)
++++|.+|++|++++|++|+++...+.+..++++.+++..+++++.+.. +.++....++++++++|||+++|++++++
T Consensus 292 ~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~l~~adg~al~~~~~~~ 371 (635)
T 4eho_A 292 HFELRAICELLAEAIATRITALESFAQSQSELFVQRLEQRMIEAITREGDWRAAIFDTSQSILQPLHADGCALVYEDQIR 371 (635)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCSHHHHSCTTSCSSGGGTCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHhcChHHHhhhcCCeEEEEECCEEE
Confidence 9999999999999999999988777777777778888888888877654 46788999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHHHHhccCCCceeecccccccCCCCccccccccceEEEEEecC--CCeEEEeecccceEEeecCC
Q 002152 456 LVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITS--KDFLFWFRSHTAKEVKWGGA 533 (959)
Q Consensus 456 ~~G~~p~~~~~~~l~~wl~~~~~~~~~~~t~~l~~~~~p~~~~~~~~~~g~l~~~i~~--~~~l~~fR~e~~~~v~W~G~ 533 (959)
++|.+|++.++.+++.|+...+. ..+|+|++|.. .||++..+++.+|||++++|+. ++|++|||+|+.++|+|+|+
T Consensus 372 ~~G~~P~~~~i~~l~~wl~~~~~-~~~~~t~~l~~-~~p~~~~~~~~~~G~l~~~i~~~~~~~l~~fR~e~~~~v~WaG~ 449 (635)
T 4eho_A 372 TIGDVPSTQDVREIAGWLDRQPR-AAVTSTASLGL-DVPELAHLTRMASGVVAAPISDHRGEFLMWFRPERVHTVTWGGD 449 (635)
T ss_dssp EEESCCCHHHHHHHHHHHTTSCC-CSSEEESCHHH-HCGGGGGGHHHHSEEEEEECSSSSSCEEEEEECCTTTTTCSSSC
T ss_pred EEeCCCCHHHHHHHHHHHHhcCC-CcEEEeccccc-cCcchhhhhhhcccEEEEEecCCCCcEEEEeccceeEEEEeccC
Confidence 99999999999999999987754 47899999986 5999999999999999999986 58999999999999999999
Q ss_pred CCCCCcC-CCCCcccCCchHHHHHHhhcccccCCccchHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccchHH
Q 002152 534 KHHPEHK-DNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDE 612 (959)
Q Consensus 534 p~~~~~~-~~g~~l~PR~SF~~w~e~V~~~s~pW~~~el~aa~~L~~iL~~~l~~i~~~~~~~~~~~~~l~~~l~~~~~e 612 (959)
|+|+... +++.+|+||+||+.|.|++++++.||...+++++..++..+......... +....
T Consensus 450 p~~~~~~~~~~~~l~PR~SF~~w~e~v~~~s~pW~~~e~~aa~~l~~~l~~~il~~r~-----------------~~~~~ 512 (635)
T 4eho_A 450 PKKPFTMGDTPADLSPRRSFAKWHQVVEGTSDPWTAADLAAAGTIGQTVADIVLQFRA-----------------VRTLI 512 (635)
T ss_dssp CSCCCCSCCSGGGCSHHHHHHHHHHTTTTCCSCCCTTHHHHHHHHHHHHHHHHHHHHH-----------------HHHHH
T ss_pred CCCccccCCCcceecceeeeecccceeeecccccchhhhHHHHhhhhhHHHHHHHHhH-----------------HHHHH
Confidence 9999764 45679999999999999999999999999999999997766554443332 01122
Q ss_pred HHHHHHHHHHHHHhcCccEEEEcCCCceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHHHHcCCCcceE
Q 002152 613 LSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNV 692 (959)
Q Consensus 613 L~~~~~~l~~lie~~~~~I~~~D~dg~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~ 692 (959)
+++..+++.+++++++++++++|.+|+|++||+++++++||+.++++|++.. ..+++++.+.+...+..+..++. ...
T Consensus 513 a~e~~~~~~~lle~a~~~i~~~D~~grI~~~N~a~~~l~G~s~~e~~g~~~l-~~~~~~~~~~~~~i~~~l~~g~~-~~~ 590 (635)
T 4eho_A 513 AREQVPQASSQVHASMQPVLITDAEGRILLMNDSFRDMLPAGSPSAVHLDDL-AGFFVESNDFLRNVAELIDHGRG-WRG 590 (635)
T ss_dssp HHHTSSSHHHHHHHCSSCCEEEETTCCEEEECHHHHTTSCSSCCCCCSSGGG-TTSSSSCTHHHHHHHHHHHHCCC-BCC
T ss_pred HHHHHHHHHHHHHhCCCcEEEECCCCeEeeHHHHHHHHHCcChHHHcCcchh-hccCCCCHHHHHHHHHHHHcCCc-EEE
Confidence 2333345778899999999999999999999999999999999999999987 78889888888888777777654 445
Q ss_pred EEEEEeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEeecchhhHHHH
Q 002152 693 ELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLM 741 (959)
Q Consensus 693 e~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~~~gvv~v~~DITerk~~E 741 (959)
|+++ .++||+.+|+.++.+|++|.+|+++|++++++|||+||++|
T Consensus 591 E~~~----~~~dG~~~~~~~~~~pv~d~~G~v~g~v~i~~DITerK~aE 635 (635)
T 4eho_A 591 EVLL----RGAGNRPLPLAVRADPVTRTEDQSLGFVLIFSDATDRRTAD 635 (635)
T ss_dssp CCEE----CCSSSSCEECCCCEEEECSTTSSCCEEEECCCCCSSSCCCC
T ss_pred EEEE----EccCCcEEEEEEEEEEEECCCCCEEEEEEEEEeCchHhhCC
Confidence 6666 78999999999999999999999999999999999999764
No 2
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=100.00 E-value=4.9e-113 Score=983.57 Aligned_cols=493 Identities=31% Similarity=0.570 Sum_probs=440.4
Q ss_pred ChhhHHHH-HhhccCCCCCCccceEEEEeCCCceEEEEecChhhhhCCCCcccccccccccCCccccccCCchHHHHHHH
Q 002152 76 PEEQITAY-LSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGLIGIDARTLFTPPSGASLAKA 154 (959)
Q Consensus 76 ~~~~~~~~-~~~i~~~g~iQp~G~ll~~~~~~~~i~~~S~N~~~~lg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~ 154 (959)
++-.++.| ++|||+||+|||||||||+|+++++|++||+|++++||.++ ++++|+++.++|++...+.++++
T Consensus 8 ~~~dl~~CdrEPIh~pG~IQphG~LLal~~~~~~I~~~S~N~~~~lg~~~-------~~llG~~l~~ll~~~~~~~l~~~ 80 (520)
T 3zq5_A 8 SDQSLRQLETLAIHTAHLIQPHGLVVVLQEPDLTISQISANCTGILGRSP-------EDLLGRTLGEVFDSFQIDPIQSR 80 (520)
T ss_dssp CHHHHHHHHTCCGGGCCEECTTSEEEEEETTTTEEEEEETTHHHHHSCCH-------HHHTTSBHHHHCEESSCCCCSSC
T ss_pred CCCCccccccccccCCCccCCCeEEEEEECCCCEEEEEcccHHHHhCcCh-------HHHcCCCHHHHcCHHHHHHHHHH
Confidence 34455666 66699999999999999999999999999999999999988 57999999999998888887766
Q ss_pred HhcccccccCcceeeccCCCCCc-ceEEEEEee-CCEEEEEeccCCCCCCcchhhhHHHHHHHHHHHHHHhhcCCCCCHH
Q 002152 155 AASREISLLNPILVHSNSRSIEK-PFYAILHRI-DVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIG 232 (959)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~-~~~~~~E~Ep~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 232 (959)
+...+....+|+.++++...+++ .|++++||+ ++++||||||..+.++. +..++++++..++.||++ +.+++
T Consensus 81 l~~~~~~~~~p~~~~~~~~~~~~~~f~~~~Hr~~~~~lilElEp~~~~~~~----~~~~~~~ll~~i~~~Ir~--sl~l~ 154 (520)
T 3zq5_A 81 LTAGQISSLNPSKLWARVMGDDFVIFDGVFHRNSDGLLVCELEPAYTSDNL----PFLGFYHMANAALNRLRQ--QANLR 154 (520)
T ss_dssp CCHHHHHHTSSEEEEEEETTTEEEEEEEEEEECTTSCEEEEEEECCTTCSC----CCTTHHHHHHHHHHHHHH--SCCHH
T ss_pred hcccccccCCcEEEEEeccCCCceeEEEEEEEEcCCEEEEEEEECCCcccc----chHHHHHHHHHHHHHHHh--cCCHH
Confidence 55444445688887753334566 899999999 99999999998654431 123578899999999999 78999
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCCccCCccCCCCchHHHHHHHHhCCEEEEecCCCCCccc
Q 002152 233 LLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312 (959)
Q Consensus 233 ~~~~~~v~~vr~~~g~DRv~iY~F~~d~~G~viaE~~~~~~~s~lg~~~pa~dip~~ar~ly~~~~~r~i~d~~~~~~~l 312 (959)
+||+++|++||++|||||||||||++||+|+||||++.++++||||+|||++|||+++|++|.+|++|+|+|++++|+||
T Consensus 155 ~il~~~v~evr~ll~~DRVmIYrF~~d~~G~VvAEs~~~~~~s~LGl~~p~~diP~~ar~ly~~~~vr~I~Di~~~pv~l 234 (520)
T 3zq5_A 155 DFYDVIVEEVRRMTGFDRVMLYRFDENNHGDVIAEDKRDDMEPYLGLHYPESDIPQPARRLFIHNPIRVIPDVYGVAVPL 234 (520)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTEEECGGGSCHHHHHHHHHCCEEEESCTTCCCEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEEEEcCCCcEEEEEEEeCCCchhhcCCccChhhhhHHHHHHHHcCCEEEEcCCCCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc--ccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEeecCCCCCCChhHHHHHHHHHH
Q 002152 313 IQ--SKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQ 390 (959)
Q Consensus 313 ~~--~~~~~~~ldls~s~lRsvsp~h~~yl~nmgv~asl~v~i~~~~~~~~~LWGLi~~hh~~pr~~~~~~r~~~~~l~~ 390 (959)
+| ++.++.|+|||+|+||++||||++||+||||+|||+|||+++| +|||||+||||+||+|++++|.+|+++++
T Consensus 235 ~~~~~~~~~~pldL~~s~lr~~sp~h~eyL~nmgV~AsLvvpI~~~~----~LWGLl~~Hh~~pR~w~~~er~~~e~la~ 310 (520)
T 3zq5_A 235 TPAVNPSTNRAVDLTESILRSAYHCHLTFLKNMGVGASLTISLIKDG----HLWGLIACHHQTPKVIPFELRKACEFFGR 310 (520)
T ss_dssp ESSSCTTTSSCCCCTTCSSBCCCHHHHHHHHHTTCSEEEEEEEEETT----EEEEEEEEEESSCCCCCHHHHHHHHHHHH
T ss_pred ecccccccCCcccccccccccCCHHHHHHHHhcCCcEEEEEeEEECC----EEEEEEEEecCCCcCCCHHHHHHHHHHHH
Confidence 97 4678999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcccC-CcccccCCchhhhhccCCeEEEEECCeEEEecCCCCHHHHHH
Q 002152 391 AFSLQLYMELQVAMQLAEKNILRTQV-LLCDMLLRDA-PFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468 (959)
Q Consensus 391 ~~s~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~l~~l~~a~g~a~~~~~~~~~~G~~p~~~~~~~ 468 (959)
++|++|+++...+....+.+..+.+. +++.|....+ +.++..+.+++++|++|||+++|++|+++++|.||+++++++
T Consensus 311 ~lsiai~q~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~ll~l~~adG~al~~~~~~~~~G~~P~~~~i~~ 390 (520)
T 3zq5_A 311 VVFSNISAQEDTETFDYRVQLAEHEAVLLDKMTTAADFVEGLTNHPDRLLGLTGSQGAAICFGEKLILVGETPDEKAVQY 390 (520)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHTCHHHHHHTTTCSEEEEEETTEEEEEESCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcChhHHHHhccHHHHhhhcCCeEEEEECCEEEEcCCCCCHHHHHH
Confidence 99999998766666665555555544 4455655544 578888999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCceeecccccccCCCCccccccccceEEEEEecCCCeEEEeecccceEEeecCCCCCCCc--CCCCC-c
Q 002152 469 IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH--KDNGG-K 545 (959)
Q Consensus 469 l~~wl~~~~~~~~~~~t~~l~~~~~p~~~~~~~~~~g~l~~~i~~~~~l~~fR~e~~~~v~W~G~p~~~~~--~~~g~-~ 545 (959)
|++||...+.+ .+|+||+|.+ .||++..+++.+||||+++|+.++|++|||+|+.++|+|||+|+|++. .++|. +
T Consensus 391 l~~wl~~~~~~-~v~~Td~L~~-~~p~a~~~~~~a~G~lai~ls~~~~l~wFR~e~~~~v~WaG~P~k~~~~~~~~g~~~ 468 (520)
T 3zq5_A 391 LLQWLENREVQ-DVFFTSSLSQ-IYPDAVNFKSVASGLLAIPIARHNFLLWFRPEVLQTVNWGGDPNHAYEATQEDGKIE 468 (520)
T ss_dssp HHHHHHHSCCC-SCEEESCGGG-TSGGGGGGHHHHSEEEEEEETTTEEEEEEECCCCEEEEESSCGGGCSEEEEETTEEE
T ss_pred HHHHHHhcCCC-CeeEecchhh-hCcchhhcccccceEEEEEeCCCCEEEEECCCcceEEEeCCCCCCcCCcCCCCCCcc
Confidence 99999988765 6899999998 599999999999999999999999999999999999999999999976 33675 8
Q ss_pred ccCCchHHHHHHhhcccccCCccchHHHHHHHHHHHHHHHHH
Q 002152 546 MHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQE 587 (959)
Q Consensus 546 l~PR~SF~~w~e~V~~~s~pW~~~el~aa~~L~~iL~~~l~~ 587 (959)
|+||+||+.|+|+|+++|.||+..|++++..++..+.+....
T Consensus 469 l~PR~SF~~W~E~v~g~s~pW~~~e~~~A~~Lr~~l~~vvl~ 510 (520)
T 3zq5_A 469 LHPRQSFDLWKEIVRLQSLPWQSVEIQSALALKKAIVNLILR 510 (520)
T ss_dssp EECCCCCCCEEEEECSCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhheeeecCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999997766555443
No 3
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=100.00 E-value=2.5e-110 Score=959.68 Aligned_cols=478 Identities=28% Similarity=0.454 Sum_probs=429.3
Q ss_pred CCCCcccccccCCCCCCCChhhHHHHHhhccCCCCCCccceEEEEeCCCceEEEEecChhhhhCCCCcccccccccccCC
Q 002152 58 SGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGLIGI 137 (959)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~iQp~G~ll~~~~~~~~i~~~S~N~~~~lg~~~~~~~~~~~~~~g~ 137 (959)
|...+|.++|.++| ||+||+|||||||||+|+ +++|++||+|++++||.++ ++|+
T Consensus 3 ~~~~~dl~~C~~EP---------------Ih~pG~IQphG~Ll~l~~-~~~I~~~S~N~~~~lg~~~---------~lG~ 57 (505)
T 3nhq_A 3 SITPVTLANCEDEP---------------IHVPGAIQPHGALVTLRA-DGMVLAASENIQALLGFVA---------SPGS 57 (505)
T ss_dssp --CCCCTTTGGGCC---------------TTSCSEECTTEEEEEECT-TSBEEEEETTHHHHHSSCC---------CTTC
T ss_pred CCCcCCcccccccc---------------ccCCCccCCCeEEEEEcC-CCeEEEEcccHHHHhCccc---------ccCC
Confidence 34567888888888 999999999999999999 8999999999999999865 8999
Q ss_pred cccc-ccCCchHHHHHHHHhcccccccCcceeeccCCCCCcceEEEEEeeCCEEEEEeccCCCCCCcchhhhHHHHHHHH
Q 002152 138 DART-LFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLA 216 (959)
Q Consensus 138 ~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~E~Ep~~~~~~~~~~~~~~~~~~~~ 216 (959)
++.+ +|++...+.+++++..... ..+|+.++ .+++.|++++||+++++|+||||..+.+. ...+.++++
T Consensus 58 ~l~~~ll~~~~~~~l~~~l~~~~~-~~~p~~~~----~~~~~f~~~~Hr~~~~lilElEp~~~~~~-----~~~~~~~ll 127 (505)
T 3nhq_A 58 YLTQEQVGPEVLRMLEEGLTGNGP-WSNSVETR----IGEHLFDVIGHSYKEVFYLEFEIRTADTL-----SITSFTLNA 127 (505)
T ss_dssp BCCHHHHHHHHHHHHHHHHSCSSC-CCCEEEEC----SSSSCEEEEEEEETTEEEEEEEECCSCCC-----CSHHHHHHH
T ss_pred chhhhhCCHHHHHHHHHHhhcccc-cCCcEEEe----cCCceEEEEEEEECCEEEEEEEEcCCccc-----chHHHHHHH
Confidence 9999 9999999999998875544 46777774 36778999999999999999999865432 123678999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCCccCCccCCCCchHHHHHHHHh
Q 002152 217 VSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296 (959)
Q Consensus 217 ~~~~~~l~~~~~~~l~~~~~~~v~~vr~~~g~DRv~iY~F~~d~~G~viaE~~~~~~~s~lg~~~pa~dip~~ar~ly~~ 296 (959)
..++.+|++ +.|+++||+++|++||++|||||||||||++||+|+||||++.++++||||+|||++|||+++|++|.+
T Consensus 128 ~~i~~~Ir~--sl~l~~il~~~v~evr~ll~~DRV~IYrF~~d~~G~VvaEs~~~~~~s~LGl~~p~~diP~~ar~ly~~ 205 (505)
T 3nhq_A 128 QRIIAQVQL--HNDTASLLSNVTDELRRMTGYDRVMAYRFRHDDSGEVVAESRREDLESYLGQRYPASDIPAQARRLYIQ 205 (505)
T ss_dssp HHHHHHHHH--CCCHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTCEECGGGSCHHHHHHHHH
T ss_pred HHHHHHHHh--cCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCEEEEEEEeCCCchhhcCCccCcccCHHHHHHHHHc
Confidence 999999999 789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecCCCCCcccccc--cccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEeecCCC
Q 002152 297 NRVRMICDCHAIPVMVIQS--KELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSP 374 (959)
Q Consensus 297 ~~~r~i~d~~~~~~~l~~~--~~~~~~ldls~s~lRsvsp~h~~yl~nmgv~asl~v~i~~~~~~~~~LWGLi~~hh~~p 374 (959)
|++|+|+|+++.|+|++|. +.++.|+|||+|+|||+||||++||+||||+|||+|||+++| +|||||+||||+|
T Consensus 206 ~~vr~I~Dv~~~~~~l~~~~~~~~~~pldLs~~~lR~~sp~h~eyL~nmgV~AsLvvpI~~~~----~LWGLl~~Hh~~p 281 (505)
T 3nhq_A 206 NPIRLIADVAYTPMRVFPALNPETNESFDLSYSVLRSVSPIHCEYLTNMGVRASMSISIVVGG----KLWGLFSCHHMSP 281 (505)
T ss_dssp CSEEEESCTTCCCEEEESSEETTTTEECCCTTCTTBCCCHHHHHHHHHHTCCEEEEEEEECSS----SEEEEEEEEESSC
T ss_pred CCEEEEcCCCCCccccccccccccCCcccccccccccCCHHHHHHHHhcCCceEEEEEEEECC----EEEEEEEEecCCC
Confidence 9999999999999999984 667899999999999999999999999999999999999999 9999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC--CcccccCCchhhhhccCCeEEEEECC
Q 002152 375 RYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA--PFSIVTQSPSIMDLVKCDGAALYYGG 452 (959)
Q Consensus 375 r~~~~~~r~~~~~l~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~l~~a~g~a~~~~~ 452 (959)
|+|++++|.+|+++++++|++|+++...+.+..++++.+.+..++.++.+.. +.++....++++++++|||+++|++|
T Consensus 282 R~w~~~er~~~e~la~~ls~al~q~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~ll~adg~al~~~~ 361 (505)
T 3nhq_A 282 KLIPYPVRMSFQIFSQVCSAIVERLEQGRIAELLRVSTERRLALARRARDADDLFGALAHPDDGIAALIPCDGALVMLGG 361 (505)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCTTTSHHHHTTCSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHhhHHHHHHhCCCeEEEEECC
Confidence 9999999999999999999999988777777777777788888888776543 46788889999999999999999999
Q ss_pred eEEEecCCCCHHHHHHHHHHHHhccCCCceeecccccccCCCCccc---cccccceEEEEEecC--CCeEEEeecccceE
Q 002152 453 RCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAAL---LGQAVCGMATARITS--KDFLFWFRSHTAKE 527 (959)
Q Consensus 453 ~~~~~G~~p~~~~~~~l~~wl~~~~~~~~~~~t~~l~~~~~p~~~~---~~~~~~g~l~~~i~~--~~~l~~fR~e~~~~ 527 (959)
+++++|.||+.+++.+|++||...+.+ +|+|| .||++.. +++.+||||+++|+. ++|++|||+|+.++
T Consensus 362 ~~~~~G~~P~~~~i~~l~~wl~~~~~~--v~~Td-----~~p~a~~~~~~~~~~~G~lai~ls~~~~~~l~wFR~e~~~~ 434 (505)
T 3nhq_A 362 RTLSIRGDFERQAGNVLQRLQRDPERD--IYHTD-----NWPQPSEDSPDGGDCCGVLAIRFHRQESGWIFWFRHEEVHR 434 (505)
T ss_dssp EEEEESSCCHHHHHHHHHHHHTCTTCS--EEEES-----CC-----------CCCEEEEEEEETTTTEEEEEEECSCCCS
T ss_pred eEEecCCCCCHHHHHHHHHHHHhcCCC--eEEeC-----CCcchhhccccccccceEEEEEecCCCCcEEEEEcCCcceE
Confidence 999999999999999999999988665 89999 4999988 889999999999986 79999999999999
Q ss_pred EeecCCCCCCCc-CCCCCcccCCchHHHHHHhhcccccCCccchHHHHHHHHHHHHH
Q 002152 528 VKWGGAKHHPEH-KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRD 583 (959)
Q Consensus 528 v~W~G~p~~~~~-~~~g~~l~PR~SF~~w~e~V~~~s~pW~~~el~aa~~L~~iL~~ 583 (959)
|+|||+|+|++. .++|.+|+||+||+.|+|+|+++|.||+..|++++..++..+.+
T Consensus 435 v~WaG~P~k~~~~~~~~~~l~PR~SF~~W~E~v~g~s~pW~~~e~~~A~~Lr~~l~~ 491 (505)
T 3nhq_A 435 IRWGGKPEKLLTIGPSGPRLTPRGSFEAWEEVVRGHSTPWSETDLAIAEKLRLDLME 491 (505)
T ss_dssp EEEEESCCCCCCCCTTCGGGSHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCcCCCCCCCCccCchhhhhhheeeecCccCCCCHHHHHHHHHHHHHHHH
Confidence 999999999976 46688999999999999999999999999999999999554443
No 4
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=100.00 E-value=7.7e-82 Score=680.56 Aligned_cols=306 Identities=34% Similarity=0.554 Sum_probs=278.0
Q ss_pred CCcccccccCCCCCCCChhhHHHHHhhccCCCCCCccceEEEEeCCCceEEEEecChhhhhCCCCcccccccccccCCcc
Q 002152 60 KSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGLIGIDA 139 (959)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~iQp~G~ll~~~~~~~~i~~~S~N~~~~lg~~~~~~~~~~~~~~g~~~ 139 (959)
..+|.++|.++| ||+||+|||||||||+| ++++|+++|+|++++||.++ ++++|+++
T Consensus 8 ~~~~l~~C~rEp---------------Ih~~G~IQphG~Ll~~~-~~~~I~~~S~N~~~~lg~~~-------~~~lG~~l 64 (327)
T 4e04_A 8 RQPDLSTCDDEP---------------IHIPGAIQPHGLLLALA-ADMTIVAGSDNLPELTGLAI-------GALIGRSA 64 (327)
T ss_dssp -----CCGGGCC---------------TTCCSEECTTSEEEEEC-TTCBEEEEETTHHHHHSCCH-------HHHTTCBH
T ss_pred CCCCcccccccc---------------ccCCCccCCCeEEEEEc-CCCeEEEEcccHHHHhCCCh-------HhhcCCCH
Confidence 367888888777 99999999999999999 89999999999999999988 57999999
Q ss_pred ccccCCchHHHHHHHHhcccccccCcceeeccCCCCCcceEEEEEeeCCEEEEEeccCCCCCCcchhhhHHHHHHHHHHH
Q 002152 140 RTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSA 219 (959)
Q Consensus 140 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~E~Ep~~~~~~~~~~~~~~~~~~~~~~~ 219 (959)
.++|++...+.+++++........+|+.+++....+++.|++++||+++++|+||||..... .. ....++++.++
T Consensus 65 ~~ll~~~~~~~l~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~Hr~~~~lilElEp~~~~~--~~---~~~~~~ll~~i 139 (327)
T 4e04_A 65 ADVFDSETHNRLTIALAEPGAAVGAPIAVGFTMPDGERAFNGSWHRHDQLVFLELEPPQRDV--RY---PQAFFRSVRSA 139 (327)
T ss_dssp HHHBCHHHHHHHHHHHHSCSCCSEEEEEEEBCCTTCCCEEEEEEEEETTEEEEEEECCCCCS--SC---CCCHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHhhccccccCCcEEEEeeccCCCceEEEEEEEECCEEEEEEEECCCcc--cc---hHHHHHHHHHH
Confidence 99999999999999887666556788888753345678999999999999999999983322 11 12468899999
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCCccCCccCCCCchHHHHHHHHhCCE
Q 002152 220 ISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRV 299 (959)
Q Consensus 220 ~~~l~~~~~~~l~~~~~~~v~~vr~~~g~DRv~iY~F~~d~~G~viaE~~~~~~~s~lg~~~pa~dip~~ar~ly~~~~~ 299 (959)
+.||++ +.|+++||+++|++||++|||||||||||++||+|+||||++.++|+||||+|||++|||+++|++|.+|++
T Consensus 140 ~~rIr~--sldl~~il~~av~evr~llg~DRVmIYrF~~d~~G~VvAEs~~~~~~s~LGl~~p~~dip~~ar~ly~~~~v 217 (327)
T 4e04_A 140 IRRLQA--AETLESACAAAAQEVREITGFDRVMIYRFASDFSGEVIAEDRCAEVESYLGLHFPASDIPAQARRLYTINPV 217 (327)
T ss_dssp HHHHHH--CCSHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTCEECGGGSCHHHHHHHHHSCE
T ss_pred HHHHHh--cCCHHHHHHHHHHHHHHHHCCCeEEEEEEcCCCCEEEEEEEecCCCcCccCCccccccchHHHHHHHHcCCE
Confidence 999999 779999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCccccc--ccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEeecCCCCCC
Q 002152 300 RMICDCHAIPVMVIQ--SKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYI 377 (959)
Q Consensus 300 r~i~d~~~~~~~l~~--~~~~~~~ldls~s~lRsvsp~h~~yl~nmgv~asl~v~i~~~~~~~~~LWGLi~~hh~~pr~~ 377 (959)
|+|+|+++.|+||+| ++.+++|+||++|+||++||||+|||+||||+|||+|||+++| +|||||+||||+||+|
T Consensus 218 r~I~Di~~~~v~l~~~~~~~~~~~ldls~s~lr~~spcH~eyL~nmgV~AsLvvpI~~~~----~LWGLl~~Hh~~pR~w 293 (327)
T 4e04_A 218 RIIPDINYRPVPVTPDLNPRTGRPIDLSFAILRSVSPVHLEYMRNIGMHGTMSISILRGE----RLWGLIACHHRKPNYV 293 (327)
T ss_dssp EEESCTTCCCEEEESCCCTTTSSCCCCTTCTTBCCCHHHHHHHHHTTCCEEEEEEEEETT----EEEEEEEEEESSCCCC
T ss_pred EEEeCCCCCccccccccccccCCcccccccccccCCHHHHHHHHHhCCcEEEEEEEEECC----EEEEEEEEecCCCcCC
Confidence 999999999999997 4678999999999999999999999999999999999999999 9999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHH
Q 002152 378 PFPLRYACEFLVQAFSLQLYME 399 (959)
Q Consensus 378 ~~~~r~~~~~l~~~~s~~l~~~ 399 (959)
++++|.+|++|++++|++|+..
T Consensus 294 ~~~er~~~e~la~~lsiaI~~~ 315 (327)
T 4e04_A 294 DLEVRQACELVAQVLAWQIGVM 315 (327)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999754
No 5
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=100.00 E-value=1.2e-81 Score=679.52 Aligned_cols=304 Identities=29% Similarity=0.471 Sum_probs=278.8
Q ss_pred cCCCCcccccccCCCCCCCChhhHHHHHhhccCCCCCCccceEEEEeCCCceEEEEecChhhhhCCCCcccccccccccC
Q 002152 57 ASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGLIG 136 (959)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~iQp~G~ll~~~~~~~~i~~~S~N~~~~lg~~~~~~~~~~~~~~g 136 (959)
.++..+|.++|.++| ||+||+|||||||||+|+++++|++||+|++++||.++ ++++|
T Consensus 28 ~~~~~~dl~~Cd~EP---------------Ih~pG~IQphG~LL~l~~~~~~I~~~S~N~~~~lg~~~-------~~llG 85 (343)
T 3s7o_A 28 LGGPEITTENCEREP---------------IHIPGSIQPHGALLTADGHSGEVLQMSLNAATFLGQEP-------TVLRG 85 (343)
T ss_dssp GTCCCCCTTTGGGCC---------------TTCCSEECTTSEEEEEETTTCBEEEEETTHHHHHSSCH-------HHHTT
T ss_pred cCCCCcCcccccccc---------------ccCCCccCCCeEEEEEECCCCEEEEEcccHHHHhCcCh-------HHHcC
Confidence 445678888888888 99999999999999999999999999999999999988 57999
Q ss_pred CccccccCCchHHHHHHHHhcccccccC---cceeeccCCCCCcceEEEEEeeCCEEEEEeccCCCCCCcchhhhHHHHH
Q 002152 137 IDARTLFTPPSGASLAKAAASREISLLN---PILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQ 213 (959)
Q Consensus 137 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~h~~~~~~~~E~Ep~~~~~~~~~~~~~~~~~ 213 (959)
+++.++|++ ..+.+++++........+ |+.+. +++.|++++||+++++||||||....+ .+++
T Consensus 86 ~~l~~ll~~-~~~~l~~~l~~~~~~~~~~~~p~~~~-----~~~~f~~~~Hr~~~~lilElEp~~~~~--------~~~~ 151 (343)
T 3s7o_A 86 QTLAALLPE-QWPALQAALPPGCPDALQYRATLDWP-----AAGHLSLTVHRVGELLILEFEPTEAWD--------STGP 151 (343)
T ss_dssp CBHHHHSTT-THHHHHHHSCTTCCTTCCEEEEECCS-----SSSEEEEEEEEETTEEEEEEEEEC------------CHH
T ss_pred CCHHHHHhH-HHHHHHHHhccccccccccCCcEEEc-----CCCEEEEEEEEECCEEEEEEEECCCCh--------HHHH
Confidence 999999999 999999887655554555 66553 467899999999999999999986432 1568
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCCccCCccCCCCchHHHHHH
Q 002152 214 KLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFL 293 (959)
Q Consensus 214 ~~~~~~~~~l~~~~~~~l~~~~~~~v~~vr~~~g~DRv~iY~F~~d~~G~viaE~~~~~~~s~lg~~~pa~dip~~ar~l 293 (959)
+++..++.||++ +.|+++||+++|+|||++|||||||||||++||+|+||||++.++|+||||+|||++|||+++|++
T Consensus 152 ~ll~~i~~rIr~--sldl~~ilq~tV~eVR~llg~DRVmIYrF~~d~~GeVvAEs~~~~~~s~LGl~~pasdiP~~ar~l 229 (343)
T 3s7o_A 152 HALRNAMFALES--APNLRALAEVATQTVRELTGFDRVMLYKFAPDATGEVIAEARREGLHAFLGHRFPASHIPAQARAL 229 (343)
T ss_dssp HHHHHHHHHHHH--CCSHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTCCCCTTCEECGGGSCHHHHHH
T ss_pred HHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHhCCCeEEEEEEcCCCCEEEEEEEecCCcccccCCccccccCHHHHHHH
Confidence 899999999999 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCEEEEecCCCCCcccccc--cccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEeec
Q 002152 294 FKQNRVRMICDCHAIPVMVIQS--KELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHH 371 (959)
Q Consensus 294 y~~~~~r~i~d~~~~~~~l~~~--~~~~~~ldls~s~lRsvsp~h~~yl~nmgv~asl~v~i~~~~~~~~~LWGLi~~hh 371 (959)
|++|++|+|+|+++.|+||+|. +.++.|+||++|+||++||||+|||+||||+|||+|||+++| +|||||+|||
T Consensus 230 y~~~~vr~I~Di~~~pv~l~~~~~~~~~~~ldLs~s~lR~~spcH~eyL~nmgV~AsLvvpI~~~~----~LWGLL~~Hh 305 (343)
T 3s7o_A 230 YTRHLLRLTADTRAAAVPLDPVLNPQTNAPTPLGGAVLRATSPMHMQYLRNMGVGSSLSVSVVVGG----QLWGLIACHH 305 (343)
T ss_dssp HHHSCEEEESCTTCCCEEEESSEETTTTEECCCTTCTTBCCCHHHHHHHHHTTCSEEEEEEEEETT----EEEEEEEEEE
T ss_pred HHcCCEEEEeccCCCccccccccccccCCcccccccccccCCHHHHHHHHHcCCcEEEEEEEEECC----EEEEEEEEEc
Confidence 9999999999999999999974 668999999999999999999999999999999999999999 9999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 002152 372 TSPRYIPFPLRYACEFLVQAFSLQLYMELQV 402 (959)
Q Consensus 372 ~~pr~~~~~~r~~~~~l~~~~s~~l~~~~~~ 402 (959)
++||+|++++|.+|++|++++|++|+++..+
T Consensus 306 ~~pR~w~~~er~~~e~la~~lsiaI~~~~~~ 336 (343)
T 3s7o_A 306 QTPYVLPPDLRTTLESLGRLLSLQVQVKEAL 336 (343)
T ss_dssp SSCCCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999876544
No 6
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=100.00 E-value=2.6e-78 Score=662.29 Aligned_cols=306 Identities=31% Similarity=0.553 Sum_probs=277.5
Q ss_pred CcccccccCCCCCCCChhhHHHHHhhccCCCCCCccceEEEEeCCCceEEEEecChhhhhCCCCcccccccccccCCccc
Q 002152 61 SFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGLIGIDAR 140 (959)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~iQp~G~ll~~~~~~~~i~~~S~N~~~~lg~~~~~~~~~~~~~~g~~~~ 140 (959)
.+|.++|.++| ||+||+|||||||||+|+++++|+++|+|++++||.++ ++++|+++.
T Consensus 22 ~~~l~~C~~Ep---------------Ih~~g~IQp~G~Ll~~~~~~~~i~~~S~N~~~~lg~~~-------~~llG~~l~ 79 (337)
T 2ool_A 22 ALDLTECDREP---------------IHIPGAIQPHGYLFVVSETDLRIASVSANVEDLLRQPP-------ASLLNVPIA 79 (337)
T ss_dssp ----CCGGGSC---------------TTCCSEECTTSEEEEECTTTCBEEEEETTHHHHHSSCG-------GGGTTCBGG
T ss_pred ccChhhhccCc---------------CcCCCccCCCEEEEEEECCCCEEEEEehhHHHHHCcCH-------HHHcCCCHH
Confidence 36777777776 99999999999999999989999999999999999988 679999999
Q ss_pred cccCCchHHHHHHHHhcccccccCcceeeccCCCCCcceEEEEEeeCCEEEEEeccCCCCCCcchhhhHHHHHHHHHHHH
Q 002152 141 TLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAI 220 (959)
Q Consensus 141 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~E~Ep~~~~~~~~~~~~~~~~~~~~~~~~ 220 (959)
++|++...+.+++.+........+|+.+.+...+.++.|++++||+++++|+||||....+. ..+.++++.+++
T Consensus 80 ~ll~~~~~~~l~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~Hr~~~~li~ElE~~~~~~~------~~~~~~ll~~i~ 153 (337)
T 2ool_A 80 HYLTAASAARLTHALHGGDPAAINPIRLDVVTPDGERAFNGILHRHDSIVILELEPRDESRY------TNEFFRSVRVAI 153 (337)
T ss_dssp GGBCHHHHHHHHHHHCC----CCCSEEEEEEETTEEEEEEEEEEEETTEEEEEEECCCCCSC------HHHHHHHHHHHH
T ss_pred HHcCHHHHHHHHHHHhcCCccccCcEEEEEeccCCCeEEEEEEEEcCCeEEEEEEecccchh------hHHHHHHHHHHH
Confidence 99999999999998876666667888877632224678999999999999999999865432 346788999999
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCCccCCccCCCCchHHHHHHHHhCCEE
Q 002152 221 SRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVR 300 (959)
Q Consensus 221 ~~l~~~~~~~l~~~~~~~v~~vr~~~g~DRv~iY~F~~d~~G~viaE~~~~~~~s~lg~~~pa~dip~~ar~ly~~~~~r 300 (959)
.||++ +.|+++||+++|++||++|||||||||||++||+|+||||++.++|+||||+|||++|||+++|++|.+|++|
T Consensus 154 ~~Ir~--sl~l~~il~~tv~evr~ll~~DRV~IYrF~~d~~G~VvaEs~~~~~~s~lGl~~p~~dip~~ar~ly~~~~vr 231 (337)
T 2ool_A 154 RRLQT--AADLPTACWIAASEVRRITGFDRIKVYQFAADWSGQVIAEDRDSGIPSLLDFHFPSSDIPAQSRALYTINPVR 231 (337)
T ss_dssp HHHHT--CCSHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTCCCCTTCEECGGGSCHHHHHHHHHSCEE
T ss_pred HHHHh--cCCHHHHHHHHHHHHHHHhCCCeeEEEEEcCCCCEEEEEEEccCCCccccCCCCCccccHHHHHHHHHhCCEE
Confidence 99999 8899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCcccccc--cccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEeecCCCCCCC
Q 002152 301 MICDCHAIPVMVIQS--KELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIP 378 (959)
Q Consensus 301 ~i~d~~~~~~~l~~~--~~~~~~ldls~s~lRsvsp~h~~yl~nmgv~asl~v~i~~~~~~~~~LWGLi~~hh~~pr~~~ 378 (959)
+|+|+++.|+||+|. +.+++|||||+|+||++||||++||+||||+|+|+|||+++| +|||||+||||+||+|+
T Consensus 232 ~I~Di~~~~v~~~~~~~~~~~~~ldl~~~~lr~~sp~h~eyL~nm~v~AsLvvpI~~~~----~LWGLl~~Hh~~pR~w~ 307 (337)
T 2ool_A 232 IIPDIGYRPSPLVPDINPRLGGPIDLSFSVLRSVSPTHLEYMVNMGMHAAMSISIVRDN----RLWGMISCHNLTPRFVS 307 (337)
T ss_dssp EESCTTCCCEEEESCCCTTTCSSCCCTTCTTBCCCHHHHHHHHHHTCCEEEEEEEEETT----EEEEEEEEEESSCCCCC
T ss_pred EEEccCCCccccccccccccCCCcccccccccCCCHHHHHHHHHcCccccEEEEEEECC----eeEEEEEEecCCCCCCC
Confidence 999999999999974 678999999999999999999999999999999999999999 99999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 002152 379 FPLRYACEFLVQAFSLQLYMEL 400 (959)
Q Consensus 379 ~~~r~~~~~l~~~~s~~l~~~~ 400 (959)
+++|.+|++|++++|++|+++.
T Consensus 308 ~~e~~~~e~la~~l~iai~q~e 329 (337)
T 2ool_A 308 YEVRQACELIAQVLTWQIGVLE 329 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999997553
No 7
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=100.00 E-value=3.5e-35 Score=295.06 Aligned_cols=152 Identities=24% Similarity=0.283 Sum_probs=140.3
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCCccCCccCCCCchHHHHHHHHhCCE
Q 002152 220 ISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRV 299 (959)
Q Consensus 220 ~~~l~~~~~~~l~~~~~~~v~~vr~~~g~DRv~iY~F~~d~~G~viaE~~~~~~~s~lg~~~pa~dip~~ar~ly~~~~~ 299 (959)
..+|++ +.|++++++++|++||+++|+|||+||+|++||+|+|+||++.++++|++|.+||++|||.+++++|.+|++
T Consensus 3 a~~Ir~--sldl~~il~~~v~~v~~~l~~DRv~Iy~f~~d~~g~vvaE~~~~~~~s~lg~~~~~~~~~~~~~~~~~~g~~ 80 (171)
T 4glq_A 3 AVQLSE--LRDRQAIFETLVAKGRELLACDRVIVYAFDDNYVGTVVAESVAEGWPQARDQVIEDPCFREHWVEAYRQGRI 80 (171)
T ss_dssp -----C--TTHHHHHHHHHHHHHHHHHTCSEEEEEEECTTCCEEEEEEEECTTSCCCTTCEECCTHHHHHTHHHHHTTCC
T ss_pred HHHHhh--cCCHHHHHHHHHHHHHHHHCCCeEEEEEEeCCCCeEEEEEEcCCCCccccCCccCccccHHHHHHHHHcCCE
Confidence 467888 889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEeecCC-CCCCC
Q 002152 300 RMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTS-PRYIP 378 (959)
Q Consensus 300 r~i~d~~~~~~~l~~~~~~~~~ldls~s~lRsvsp~h~~yl~nmgv~asl~v~i~~~~~~~~~LWGLi~~hh~~-pr~~~ 378 (959)
++|+|+++.+. +|||.+||++|||+|+|+|||+++| +|||+|+||||. ||.|+
T Consensus 81 ~~I~Dv~~~~~----------------------~~~~~~~l~~~~v~S~L~vPi~~~~----~l~GlL~~~~~~~~r~w~ 134 (171)
T 4glq_A 81 QATTDIFKAGL----------------------TECHLNQLRPLKVRANLVVPMVIDD----QLFGLLIAHQASEPRQWQ 134 (171)
T ss_dssp EEESCGGGTTC----------------------CHHHHHHHGGGTEEEEEEEEEEETT----EEEEEEEEEEESSCCCCC
T ss_pred EEEcCcCcCCC----------------------CHHHHHHHHhcCCcEEEEEEEEECC----EEEEEEEEEeCCCCCCCC
Confidence 99999987543 8999999999999999999999999 999999999985 99999
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 002152 379 FPLRYACEFLVQAFSLQLYME 399 (959)
Q Consensus 379 ~~~r~~~~~l~~~~s~~l~~~ 399 (959)
..++.+++.+|.++++.|.++
T Consensus 135 ~~ei~ll~~lA~ql~iAi~qa 155 (171)
T 4glq_A 135 EIEIDQFSELASTGSLVLERL 155 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998888654
No 8
>2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A*
Probab=99.96 E-value=1.5e-28 Score=247.37 Aligned_cols=164 Identities=35% Similarity=0.587 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCC-CCCCccCCccCCCCchHHHHHHHHhCCEEEEecCCCCC
Q 002152 231 IGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRS-DLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIP 309 (959)
Q Consensus 231 l~~~~~~~v~~vr~~~g~DRv~iY~F~~d~~G~viaE~~~~-~~~s~lg~~~pa~dip~~ar~ly~~~~~r~i~d~~~~~ 309 (959)
++++++++++++++++|+|||+||+|++|++|++++|++.+ ++++++|.+||++|+|.+++.+|.++++|+|+|++..+
T Consensus 1 l~~il~~~~~~~~~~l~~dr~~i~~~~~~~~~~~~~e~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~i~d~~~~~ 80 (172)
T 2k2n_A 1 LDQILRATVEEVRAFLGTDRVKVYRFDPEGHGTVVAEARGGERLPSLLGLTFPAGDIPEEARRLFRLAQVRVIVDVEAQS 80 (172)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEEECCTTSCCEEEEEEESSTTSCCCTTCBCCTTCSCSHHHHHHHHTCCEECCCGGGCC
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEEECCCCCEEEEEEEecCCCCccccCCccCcccCcHHHHHHHHhCCeEEEeeccccc
Confidence 47899999999999999999999999999999999999987 47899999999999999999999999999999999998
Q ss_pred ccccc--ccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEeecCCCCCCChhHHHHHHH
Q 002152 310 VMVIQ--SKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEF 387 (959)
Q Consensus 310 ~~l~~--~~~~~~~ldls~s~lRsvsp~h~~yl~nmgv~asl~v~i~~~~~~~~~LWGLi~~hh~~pr~~~~~~r~~~~~ 387 (959)
+.++| ...+++|++++.+..++.+|||.+|++++|++|.|++||+.+| ++||+|.|||+.||.|+.+++.+++.
T Consensus 81 ~g~v~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vPi~~~~----~l~G~l~~~~~~~~~~~~~e~~~l~~ 156 (172)
T 2k2n_A 81 RSISQPESWGLSARVPLGEPLQRPVDPCHVHYLKSMGVASSLVVPLMHHQ----ELWGLLVSHHAEPRPYSQEELQVVQL 156 (172)
T ss_dssp CCCSCCCSCCCSSCCCCCSSSSCCCCHHHHHHHHTTTCSEEEECCCSCSS----CCCEEEEEEECSCCCCCHHHHHHHHH
T ss_pred cccccccccccCCceeccchhhcCCCHHHHHHHHhcCCeEEEEEEEEECC----EEEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 88875 4678999999999999999999999999999999999999888 99999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 002152 388 LVQAFSLQLYM 398 (959)
Q Consensus 388 l~~~~s~~l~~ 398 (959)
++.++|+.|+.
T Consensus 157 la~~~a~ai~~ 167 (172)
T 2k2n_A 157 LADQVSIAIAQ 167 (172)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988864
No 9
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A*
Probab=99.95 E-value=3.4e-27 Score=245.16 Aligned_cols=183 Identities=32% Similarity=0.534 Sum_probs=156.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCC-CCCCccCCccCCCCchHH
Q 002152 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRS-DLEPYLGIHFPANDIPQA 289 (959)
Q Consensus 211 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~v~~vr~~~g~DRv~iY~F~~d~~G~viaE~~~~-~~~s~lg~~~pa~dip~~ 289 (959)
+..+++.++..+|.+ +.|++++++++++++++++|+|||+||.|++|++|++++|+..+ ++++++|.+||.+|+|.+
T Consensus 13 ~~~~~L~~i~~~i~~--~~dl~~il~~~~~~l~~~l~~dr~~i~~~d~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~ 90 (208)
T 2lb5_A 13 SRDALINRITHQIRQ--SLELDQILRATVEEVRAFLGTDRVKVYRFDPEGHGTVVAEARGGERLPSLLGLTFPAGDIPEE 90 (208)
T ss_dssp --------------------CHHHHHHHHHHHHHHHCCSEEEEEECCTTSEEEEEEEEESSCCSCCCTTCEEEGGGCCSH
T ss_pred HHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHCCCEEEEEEEcCCCCEEEEEEEecCCCCccccCCcCChhhCcHH
Confidence 445667778888888 77999999999999999999999999999999999999999987 689999999999999999
Q ss_pred HHHHHHhCCEEEEecCCCCCccccc--ccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEE
Q 002152 290 ARFLFKQNRVRMICDCHAIPVMVIQ--SKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLV 367 (959)
Q Consensus 290 ar~ly~~~~~r~i~d~~~~~~~l~~--~~~~~~~ldls~s~lRsvsp~h~~yl~nmgv~asl~v~i~~~~~~~~~LWGLi 367 (959)
++.+|..+++|+|+|+...+++++| ...+++|++++.+..++.+|||.+|++++|++|.|+|||+.+| ++||+|
T Consensus 91 ~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~l~~~~~~S~l~vPi~~~~----~l~GvL 166 (208)
T 2lb5_A 91 ARRLFRLAQVRVIVDVEAQSRSISQPESWGLSARVPLGEPLQRPVDPCHVHYLKSMGVASSLVVPLMHHQ----ELWGLL 166 (208)
T ss_dssp HHHHHHHTCCCEECCGGGCCCCCCCSSCCCCCSCCCCCSCSSCCCCHHHHHHHHHTTCSEEEEEEEEETT----EEEEEE
T ss_pred HHHHHHhCCeEEEeccccccccccccccccccccccccchhhccCCHHHHHHHHhcCCcEEEEEEEEECC----EeEEEE
Confidence 9999999999999999999888765 3567899999999999999999999999999999999999999 999999
Q ss_pred EeecCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 002152 368 VCHHTSPRYIPFPLRYACEFLVQAFSLQLYME 399 (959)
Q Consensus 368 ~~hh~~pr~~~~~~r~~~~~l~~~~s~~l~~~ 399 (959)
.||++.||.|+.+++.+++.++.++++.|+.+
T Consensus 167 ~~~~~~~~~~~~~e~~ll~~la~~~a~ai~~a 198 (208)
T 2lb5_A 167 VSHHAEPRPYSQEELQVVQLLADQVSIAIAQA 198 (208)
T ss_dssp EEEESCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988643
No 10
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=99.94 E-value=8.8e-26 Score=237.82 Aligned_cols=221 Identities=12% Similarity=0.044 Sum_probs=185.1
Q ss_pred cEEEEcCCCceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHHHHcCCCcceEEEEEEeeeeccCCcEEE
Q 002152 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVY 709 (959)
Q Consensus 630 ~I~~~D~dg~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~~~~~~~~~dG~~~~ 709 (959)
.|+++|.+|+|+++|+++++++||+.+|++|+++. .+.++.........+...+..+.....++.. .++||+.+|
T Consensus 1 ~i~i~D~~g~i~~~N~a~~~l~Gy~~~el~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~----~~~dG~~~~ 75 (227)
T 3ewk_A 1 LVSITDLQGRILYANDNFCAVSRYGREELVGQDHR-IVNSGYHGKAYIRDMWRTISRGNIWQGEFCN----RRKDGTRYW 75 (227)
T ss_dssp CEEEEETTCBEEEECHHHHHHTTCCHHHHTTSBGG-GGCCSCSCHHHHHHHHHHHTTTCCEEEEEEE----ECSSSCEEE
T ss_pred CEEEECCCCcEEehHHHHHHHHCcCHHHHcCCCHH-HcCCCCCCHHHHHHHHHHHHcCCeEEEEEEE----EcCCCCEEe
Confidence 37889999999999999999999999999999986 6665544444444444555556666667666 789999999
Q ss_pred EEEEEEEeecCCCCEEEEEEEeecchhhHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeeCCCCcEEeecHHHHHHhCCCc
Q 002152 710 ILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMR 789 (959)
Q Consensus 710 v~v~~~pi~d~~g~~~gvv~v~~DITerk~~E~~L~~se~~l~~i~e~~~~~i~~I~~~D~~g~i~~~N~a~~~l~G~~~ 789 (959)
+.++..|++|.+|.+.+++++.+|||++|++|++|+. ++.++++++. +|+++|.+|+|+++|+++++++||+.
T Consensus 76 ~~~~~~p~~d~~g~~~~~~~~~~DIT~~k~~e~~l~~----~~~~~~~~~~---~i~~~d~~g~i~~~N~~~~~~~G~~~ 148 (227)
T 3ewk_A 76 VDSTIVPLMDNAGKPRQYISIRRDITAQKEAEAQLAR----LKQAMDANSE---MILLTDRAGRIIYANPALCRFSGMAE 148 (227)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEECTTTTHHHHHHHH----HHHHHHTCCS---EEEEECTTSCEEEECHHHHHHHTCCT
T ss_pred eeeEEEEEEcCCCCEEEEEEEEEehhhHHHHHHHHHH----HHHHHhcCcC---eEEEEcCCCcEEEEchHHHHHhCCCH
Confidence 9999999999999999999999999999999998864 4567777765 49999999999999999999999999
Q ss_pred hhhcCCCcccccccccccccChhhHHHHHHHHHhhhcCCCcceeeEEEEccCCc------EEEEEEEEeeeeCCCCCEEE
Q 002152 790 HEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQGQ------FVEVALTASRRTDAEGKVIG 863 (959)
Q Consensus 790 eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l~~~~~~~~~~~~e~~~~~~dG~------~~~v~~~~~pi~d~~G~i~g 863 (959)
+|++|++... +.++++...+...+.+.+..+..+..++..++++|. .+|+.+++.|++|.+|.+++
T Consensus 149 ~e~~g~~~~~--------l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k~G~~~~dg~~~~~~~~~~pi~d~~g~~~~ 220 (227)
T 3ewk_A 149 GELLGQSPSI--------LDSPLADQETLAAMQEALQAGQPWSGRLLNRRRTGPAPHDAEDYWAEISTTPIHTDGNGLVG 220 (227)
T ss_dssp HHHHSSCGGG--------GBCTTSCHHHHHHHHHHHHHTCCEECCEEEEEECCSSSSCEEEEEEEEEEEEEECSSSCEEE
T ss_pred HHHcCCChhh--------ccCCCCCHHHHHHHHHHHHcCCceeEEEEEECCCCCcCcccceEEEEEEEEEEECCCCCEEE
Confidence 9999998543 233444445556666777767788999999999997 89999999999999999999
Q ss_pred EEEEEee
Q 002152 864 CFCFMQI 870 (959)
Q Consensus 864 ~v~i~~D 870 (959)
++++.+|
T Consensus 221 ~v~i~~D 227 (227)
T 3ewk_A 221 YVQIQHD 227 (227)
T ss_dssp EEEEEEC
T ss_pred EEEEecC
Confidence 9999987
No 11
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.79 E-value=7.5e-19 Score=197.95 Aligned_cols=239 Identities=10% Similarity=0.027 Sum_probs=173.8
Q ss_pred HHHHHHHhcCccEEEEcCCCceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHHHHcCCCc---------
Q 002152 619 EMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEED--------- 689 (959)
Q Consensus 619 ~l~~lie~~~~~I~~~D~dg~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~l~~~~~--------- 689 (959)
....++++++..++++|.+|+|+++|+++.+++||+++|++|+++. +++||++.+.+...+.........
T Consensus 87 ~~~~~l~a~~~~i~v~~~~G~i~yvs~~~~~~lGy~~~el~g~~~~-~~ihp~D~~~~~~~l~~~~~~~~~~~~~~~~~~ 165 (361)
T 4f3l_A 87 FTQLMLEALDGFFLAIMTDGSIIYVSESVTSLLEHLPSDLVDQSIF-NFIPEGEHSEVYKILSTHLLESDSLTPEYLKSK 165 (361)
T ss_dssp HHHHHHHHTTEEEEEEETTSBEEEECTTHHHHHCCCHHHHTTSBGG-GGSCGGGHHHHHHHHHHCCCCCCSSSCGGGCGG
T ss_pred HHHHHHHhcCceEEEEcCCccEEEEechhhhhcCCCHHHhcCCcHH-HhcCHHHHHHHHHHhccCCCCCCCCCccccccc
Confidence 3456789999999999999999999999999999999999999999 999999999888877654321111
Q ss_pred --ceEEEEEEeeee--ccCCcEEEEEEEEEEee---------------------cCCCCEEEEEEEeecchhhHHHHHHH
Q 002152 690 --KNVELKLRKFEL--QKQHSVVYILVNACTSR---------------------DYKNNVKGVCFVGQDITHEKVLMDKF 744 (959)
Q Consensus 690 --~~~e~~~~~~~~--~~dG~~~~v~v~~~pi~---------------------d~~g~~~gvv~v~~DITerk~~E~~L 744 (959)
..+..++..... .......++...+.... ...+....++++.++++.+...+..
T Consensus 166 ~~~~f~cr~~~~~~~~~~~~~y~~i~~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~lvai~r~~~~~~~~e~~- 244 (361)
T 4f3l_A 166 NQLEFCCHMLRGTIDPKEPSTYEYVRFIGNFKSLTSVSTSTHNGFEGTIQRTHRPSYEDRVCFVATVRLATPQFIKEMC- 244 (361)
T ss_dssp GEEEEEEEEECCCSCSSSCCCEEEEEEEEEEEECC------------------------CEEEEEEEEESSCCSSEEEC-
T ss_pred CceeEEEEEeccCCCCCCCCceEEEEEEEEEEeccCCCcccccCcccccccccCccCCCceEEEEEEecCCCCcccccc-
Confidence 112222211000 01233444443333221 1112234556667777665322110
Q ss_pred HHHHHHHHHHHHhcCCCCCCeeeeCCCCcEEeecHHHHHHhCCCchhhcCCCcccccccccccccChhhHHHHHHHHHhh
Q 002152 745 IRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQG 824 (959)
Q Consensus 745 ~~se~~l~~i~e~~~~~i~~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l~~~ 824 (959)
.++... ...++..|.+|+++++|+++..++||+++|++|+.+. .+.||+|...+...+.+.
T Consensus 245 ---------~i~~~~--~~f~~~~~~dg~~~~vn~~~~~ilGY~~eEl~g~~~~--------~~iHpdD~~~~~~~~~~~ 305 (361)
T 4f3l_A 245 ---------TVEEPN--EEFTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGY--------DYYHVDDLENLAKCHEHL 305 (361)
T ss_dssp ---------SCSSSC--CEEEEEECTTSBEEEECTTSHHHHCCCHHHHTTSBGG--------GGBCHHHHHHHHHHHHHH
T ss_pred ---------cccCCc--ceeEEEEcCCceEEEECChhhhhhCcCHHHHcCCCHH--------HeECHHHHHHHHHHHHHH
Confidence 011111 1236678999999999999999999999999998754 477899999988888888
Q ss_pred hcCCCcceeeEEEEccCCcEEEEEEEEeeeeCC-CCCEEEEEEEEeecccccHHH
Q 002152 825 ITGQGTENFPFGFFNRQGQFVEVALTASRRTDA-EGKVIGCFCFMQILVPDLQPA 878 (959)
Q Consensus 825 ~~~~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~-~G~i~g~v~i~~DITerk~~E 878 (959)
+.++.....++++++++|.++|+..++.+++|. +|++.+++|+.+|||+++..+
T Consensus 306 l~~g~~~~~eyR~~~kdG~~vWv~~~~~~v~~~~~g~~~~iv~~~~dITe~~~~~ 360 (361)
T 4f3l_A 306 MQYGKGKSCYYRFLTKGQQWIWLQTHYYITYHQWNSRPEFIVCTHTVVSYAEVRA 360 (361)
T ss_dssp HHHSEEECCCEEEECTTSEEEEEEEEEEEEECTTTCCEEEEEEEEEECCHHHHHH
T ss_pred HhCCCcceEEEEEEecCCCEEEEEEEEEEEEcCCCCCeeEEEEEEEECChhHhhc
Confidence 877777888999999999999999999999998 899999999999999876543
No 12
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.77 E-value=3.9e-18 Score=193.60 Aligned_cols=234 Identities=12% Similarity=0.089 Sum_probs=167.1
Q ss_pred HHHHHhcCccEEEEcCC-CceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHHHH-----------cC--
Q 002152 621 VRLIETATAPIFGVDSS-GTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRAL-----------LG-- 686 (959)
Q Consensus 621 ~~lie~~~~~I~~~D~d-g~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~l-----------~~-- 686 (959)
..++++++..+++++.+ |+|+|+|++++.++||+++|++|+++. +++||++.+.+.+.+.... .|
T Consensus 89 ~~ll~~~~gfi~v~~~~~G~i~yvs~~~~~~lG~~~~el~g~~~~-~~ihp~D~~~~~~~L~~~~~~p~~~~~~~~tg~~ 167 (387)
T 4f3l_B 89 HLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLIGQSLF-DYLHPKDIAKVKEQLSSSDTAPRERLIDAKTGLP 167 (387)
T ss_dssp HHHHHTCCSEEEEEETTTCBEEEECTTHHHHHSCCHHHHTTSBGG-GGBCGGGHHHHHHHHSCC----------------
T ss_pred HHHHhcCCCEEEEEecCCeEEEEEchhhHHHcCCCHHHHCCCcHH-HhcCCCCHHHHHHHhcccccCccccccCcccCCc
Confidence 45788999999999987 999999999999999999999999999 9999999988876653221 00
Q ss_pred --------------CCcceEEEEEEeeeec-----------------cCCcEEEEEEEEEEeec---------------C
Q 002152 687 --------------EEDKNVELKLRKFELQ-----------------KQHSVVYILVNACTSRD---------------Y 720 (959)
Q Consensus 687 --------------~~~~~~e~~~~~~~~~-----------------~dG~~~~v~v~~~pi~d---------------~ 720 (959)
+....+.++++..... ++..+.++.+++..... .
T Consensus 168 ~~~e~~~~~~~~~~g~~rsF~cRmr~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~G~l~~~~~~~~~~~~~~~~~~~ 247 (387)
T 4f3l_B 168 VKTDITPGPSRLCSGARRSFFCRMKCNRPSVKVEDKDFASTCSKKKADRKSFCTIHSTGYLKSWPPTKMGLDEDNEPDNE 247 (387)
T ss_dssp ----------CCCGGGEEEEEEEEECSCC-------------------CCSEEEEEEEEEEEC-----------------
T ss_pred cCCCCCCcccccccCCceeEEEeeecccCCcccccccccccccccccCCCceEEEEEEEEEecccccccccccccccccC
Confidence 1112344454432110 23445555555433211 0
Q ss_pred CCCEEEEEEEeecchhhHHH--HHHHHHHHHHHHHHHHhcCCCCCCeeeeCCCCcEEeecHHHHHHhCCCchhhcCCCcc
Q 002152 721 KNNVKGVCFVGQDITHEKVL--MDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLP 798 (959)
Q Consensus 721 ~g~~~gvv~v~~DITerk~~--E~~L~~se~~l~~i~e~~~~~i~~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~ 798 (959)
.+....++++.++++..... ..+ +..+.. ..++..|.+|+++|+|+++..++||+++|++|+.+.
T Consensus 248 ~~~~~~lvai~r~~~~~~~~~~~~e----------i~~~~~---~fi~~~~~dg~~~~vn~~~~~ilGY~~eEl~g~~~~ 314 (387)
T 4f3l_B 248 GCNLSCLVAIGRLHSHMVPQPANGE----------IRVKSM---EYVSRHAIDGKFVFVDQRATAILAYLPQELLGTSCY 314 (387)
T ss_dssp --CCCEEEEEEEECCCSCCSCCCSS----------SCBCCC---EEEEEECTTSBEEEECTHHHHHHCCCHHHHTTSBGG
T ss_pred CCcceEEEEEEecccCCCCCCcccc----------cccCCc---eEEEEECCCCEEEEECCCcccccCCCHHHHcCCcHH
Confidence 11233566777775432100 000 111222 236778999999999999999999999999999754
Q ss_pred cccccccccccChhhHHHHHHHHHhhhcCC-CcceeeEEEEccCCcEEEEEEEEeeeeCC-CCCEEEEEEEEeecccccH
Q 002152 799 REIFGNFCRMKGQDMLTKFMILLYQGITGQ-GTENFPFGFFNRQGQFVEVALTASRRTDA-EGKVIGCFCFMQILVPDLQ 876 (959)
Q Consensus 799 ~~i~~~~~~l~~~e~~~~~~~~l~~~~~~~-~~~~~e~~~~~~dG~~~~v~~~~~pi~d~-~G~i~g~v~i~~DITerk~ 876 (959)
.+.||+|...+...+.+.+.++ .....+++++++||.++|+..++.+++|. +|++.+++|+.+|||+||+
T Consensus 315 --------~~iHpdD~~~~~~~~~~~l~~~~~~~~~eyR~~~kdG~~vWv~~~~~~~~~~~~g~~~~ivg~~~dIT~Rk~ 386 (387)
T 4f3l_B 315 --------EYFHQDDIGHLAECHRQVLQTREKITTNCYKFKIKDGSFITLRSRWFSFMNPWTKEVEYIVSTNTVVLANVL 386 (387)
T ss_dssp --------GTBCHHHHHHHHHHHHHHTTCSSCEECCCEEEECTTSCEEEEEEEEEEEEETTTTEEEEEEEEEEECC----
T ss_pred --------HeeCHHHHHHHHHHHHHHHhcCCCeeeEEEEEEccCCCEEEEEEEEEEEECCCCCCEEEEEEEEEEcchhhc
Confidence 4778999999999998888654 45678999999999999999999999987 8999999999999999874
No 13
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=99.71 E-value=9.7e-17 Score=155.02 Aligned_cols=138 Identities=12% Similarity=0.086 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHHHhcCccEEEEcCCCceehhcHHHHHHhCCCcccccCC--CccccccCCCchHHHHHHHHHHHcCCC
Q 002152 611 DELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGK--SLIDEVVHEESQGAVENLICRALLGEE 688 (959)
Q Consensus 611 ~eL~~~~~~l~~lie~~~~~I~~~D~dg~iv~~N~~~~~l~G~~~eeliGk--~~~~~l~~~~~~~~~~~~l~~~l~~~~ 688 (959)
++|++++++|+.+++.+++++|.+|.++.++++|+++.+++||+++++.+. .+. +++||++...+...+..++.++.
T Consensus 2 ~aL~~se~rl~~~~~~~~~g~w~~d~~~~~~~~s~~~~~~~G~~~~~~~~~~~~~~-~~ihpdD~~~~~~~~~~~~~~~~ 80 (142)
T 3mr0_A 2 NALSASEERFQLAVSGASAGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHR-ESIHPDDRARVLAALKAHLEHRD 80 (142)
T ss_dssp -------CCHHHHHHHTTCEEEEECTTTCCEEECHHHHHHTTCCGGGSCSEEC----CCBCTTTHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHhCCcEEEEEEcCCCeEEECHHHHHHhCCCccccCCCHHHHH-hhcCHHHHHHHHHHHHHHHhCCC
Confidence 356778888999999999999999999999999999999999999998763 455 78999999999988888888777
Q ss_pred cceEEEEEEeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEeecchhhHHHHHHHHHHHHHHHH
Q 002152 689 DKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEA 753 (959)
Q Consensus 689 ~~~~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~~~gvv~v~~DITerk~~E~~L~~se~~l~~ 753 (959)
.+..++++ .+++|..+|+...+.|++|.+|.+.+++++++|||++|++|++|++++++|+.
T Consensus 81 ~~~~e~r~----~~~~G~~~w~~~~~~~~~d~~g~~~~~~G~~~DITerk~~E~~L~~~~~~l~~ 141 (142)
T 3mr0_A 81 TYDVEYRV----RTRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVTDRKRDEDALRVSREELRR 141 (142)
T ss_dssp CEEEEEEE----ECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEEEE----ECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEcCchHHHHHHHHHHHHHHHhc
Confidence 77778877 78999999999999999999999999999999999999999999999999875
No 14
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=99.65 E-value=9.1e-17 Score=179.97 Aligned_cols=190 Identities=14% Similarity=0.127 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCeeeeCCCCcEEeecHHHHHHhCCCchhhcCCCcccccccccccccChhhHHHHHHHHHh
Q 002152 744 FIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQ 823 (959)
Q Consensus 744 L~~se~~l~~i~e~~~~~i~~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l~~ 823 (959)
+++++..++.++++++. +|+++|.+|+|++||+++++++||+.++++|+++.. +.++++.. ..+..
T Consensus 3 l~~~~~~~~~i~~~~~~---~i~~~d~~g~i~~~N~a~~~l~G~~~~e~~G~~~~~--------~~~~~~~~---~~~~~ 68 (349)
T 3a0r_A 3 VEHLRNFSESILESLET---AIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKD--------LPDFEEIG---SVAES 68 (349)
T ss_dssp ------CCCSSGGGSSS---EEEEEESSSBCSCBCHHHHHHHSCCSTTTTTCBSTT--------STTTTHHH---HHHHH
T ss_pred hHHHHHHHHHHHhhhcC---eEEEECCCCCEEeeHHHHHHHhCCCHHHHcCcCHHH--------CcChhHHH---HHHHH
Confidence 34566778889999985 499999999999999999999999999999998653 22223222 22333
Q ss_pred hhcCCCcceeeEEEEccCCcEEEEEEEEeeeeCCCCCE-EEEEEEEeecccccHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002152 824 GITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKV-IGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQE 902 (959)
Q Consensus 824 ~~~~~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~i-~g~v~i~~DITerk~~Elelq~~ae~~~~ak~~fLa~iSHE 902 (959)
....+..... ....+..+|+.++..|+.+.+|.. .|++++++|||++++.+.++++. +..+.+.+|++.++||
T Consensus 69 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~DiTe~~~~e~~~~~~--~~~~~~~~~~~~i~He 142 (349)
T 3a0r_A 69 VFENKEPVFL----NFYKFGERYFNIRFSPFRNAKTQLLEGVIITIDDVTELYKYEEERKRR--ERLSILGEMTARVAHE 142 (349)
T ss_dssp HHHHCCCCEE----ECCCBTTBCCEEEEEEECCTTTTSSCEEEEEEECCSTTTTTTTTTTHH--HHHHHHHHHHHHHHHH
T ss_pred HHhcCCceee----cccccCceEEEEEEEEEEcCCCceeeEEEEEEEechHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 3333322222 122223457888899999888875 58999999999999887665432 2334677999999999
Q ss_pred hHhhhhHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHhhcc-cCccccc
Q 002152 903 VKNPLNGIRFVHKLLESSSI-SENQRQYLETSDACERQIMTIIDG-MDLRCIE 953 (959)
Q Consensus 903 lRnPL~~I~g~~~LL~~~~l-~e~~~~~l~~i~~~~~rl~~LI~d-Ld~srIe 953 (959)
+||||++|.++++++..... +++.+++++.+..++++|..++++ +++++..
T Consensus 143 lr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~ 195 (349)
T 3a0r_A 143 IRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSKER 195 (349)
T ss_dssp HHHHHHHHHHHHHHHTTSCSCSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hcchHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 99999999999999986433 344688999999999999999999 8998853
No 15
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=99.64 E-value=1e-15 Score=147.82 Aligned_cols=137 Identities=8% Similarity=0.113 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCeeeeCCCCcEEeecHHHHHHhCCCchhhcCCCcccccccccccccChhhHHHHHHHH
Q 002152 742 DKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILL 821 (959)
Q Consensus 742 ~~L~~se~~l~~i~e~~~~~i~~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l 821 (959)
++|++++++|+.++++++. ++|.+|.++.+++||+++.+++||+++++.+... .+..++||+|...+...+
T Consensus 2 ~aL~~se~rl~~~~~~~~~---g~w~~d~~~~~~~~s~~~~~~~G~~~~~~~~~~~------~~~~~ihpdD~~~~~~~~ 72 (142)
T 3mr0_A 2 NALSASEERFQLAVSGASA---GLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEIT------GHRESIHPDDRARVLAAL 72 (142)
T ss_dssp -------CCHHHHHHHTTC---EEEEECTTTCCEEECHHHHHHTTCCGGGSCSEEC---------CCBCTTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc---EEEEEEcCCCeEEECHHHHHHhCCCccccCCCHH------HHHhhcCHHHHHHHHHHH
Confidence 4678899999999999875 4999999999999999999999999998876421 134578899999999999
Q ss_pred HhhhcCCCcceeeEEEEccCCcEEEEEEEEeeeeCCCCCEEEEEEEEeecccccHHHHHHHhHHHH
Q 002152 822 YQGITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDM 887 (959)
Q Consensus 822 ~~~~~~~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~i~g~v~i~~DITerk~~Elelq~~ae~ 887 (959)
..++.++..+..++++.+++|+++|+...+.|++|.+|.+.+++|+++|||++|++|.++++..++
T Consensus 73 ~~~~~~~~~~~~e~r~~~~~G~~~w~~~~~~~~~d~~g~~~~~~G~~~DITerk~~E~~L~~~~~~ 138 (142)
T 3mr0_A 73 KAHLEHRDTYDVEYRVRTRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVTDRKRDEDALRVSREE 138 (142)
T ss_dssp HHHHHHCCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCceEEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEcCchHHHHHHHHHHHHHH
Confidence 888887778899999999999999999999999999999999999999999999999887665544
No 16
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=99.63 E-value=1.3e-15 Score=163.02 Aligned_cols=193 Identities=10% Similarity=0.018 Sum_probs=119.6
Q ss_pred EEeecCCCCEEEEEEEee------cchhhHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeeCC---CCcEEeecHHHHHHh
Q 002152 715 CTSRDYKNNVKGVCFVGQ------DITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDE---NACCSEWNAAMEKVT 785 (959)
Q Consensus 715 ~pi~d~~g~~~gvv~v~~------DITerk~~E~~L~~se~~l~~i~e~~~~~i~~I~~~D~---~g~i~~~N~a~~~l~ 785 (959)
.+++|.++....+..... .+.....+++++++++.+|+.++++++. +|+++|. +|+|++||+++++++
T Consensus 23 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~---~i~~~d~~~~~g~i~~~N~a~~~l~ 99 (258)
T 3p7n_A 23 RDLYDDDDKDHPFTMGQDRPIDGSGAPGADDTRVEVQPPAQWVLDLIEASPI---ASVVSDPRLADNPLIAINQAFTDLT 99 (258)
T ss_dssp --------------------------------------CCHHHHHHHHTCSS---EEEEECTTSTTCCEEEECHHHHHHH
T ss_pred CCccccCCCcCceeccCCCCCCcccCCcchhhHHHHHhHHHHHHHHHhcCCc---cEEEEcCCCCCCcEEEEhHHHHHHc
Confidence 345555554443333222 3334445566788889999999999985 4999999 899999999999999
Q ss_pred CCCchhhcCCCcccccccccccccChhhHHHHHHHHHhhhcCCCcceeeEEEEccCCcEEEEEEEEeeeeCCCCCEEEEE
Q 002152 786 GWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCF 865 (959)
Q Consensus 786 G~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l~~~~~~~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~i~g~v 865 (959)
||+.++++|+.+.. +.++++...+...+...+..+..+..++++.+++|..+|+.++..|++|.+|.+.+++
T Consensus 100 G~~~~el~g~~~~~--------l~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~dG~~~~~~~~~~pi~d~~g~~~~~v 171 (258)
T 3p7n_A 100 GYSEEECVGRNCRF--------LAGSGTEPWLTDKIRQGVREHKPVLVEILNYKKDGTPFRNAVLVAPIYDDDDELLYFL 171 (258)
T ss_dssp CCCGGGTTTSCGGG--------GCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCSEEEE
T ss_pred CCCHHHHCCCChhh--------ccCCCCchhHHHHHHHHHHcCCCeEEEEEEEcCCCCEEEEeeEEEEEEcCCCCEEEEE
Confidence 99999999998542 3345555555666666776667888999999999999999999999999999999999
Q ss_pred EEEeeccccc--HHHHHHHhHHHHHH---HHHHHH---------HHHHHHHhHhhhhHHHHHHHHHh
Q 002152 866 CFMQILVPDL--QPALEAQGLEDMDI---YAKIKE---------LAYIRQEVKNPLNGIRFVHKLLE 918 (959)
Q Consensus 866 ~i~~DITerk--~~Elelq~~ae~~~---~ak~~f---------La~iSHElRnPL~~I~g~~~LL~ 918 (959)
++++|||++| +.+.+++...+... ....+. ...++|++..+++.|......+.
T Consensus 172 ~~~~DITerk~~~~e~~~~~~~~~l~~L~~r~~~i~~~~~~g~~~~eia~~l~~s~~tv~~~l~~i~ 238 (258)
T 3p7n_A 172 GSQVEVDDDQPNMGMARRERAAEMLKTLSPRQLEVTTLVASGLRNKEVAARLGLSEKTVKMHRGLVM 238 (258)
T ss_dssp EEEEEC-------CHHHHHHHHHHHTTSCHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred EEeeecchhhhhhhHHHHHHHHHHHhhcCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 9999999994 33333222211111 111111 35668888888888886555444
No 17
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=99.61 E-value=5.1e-15 Score=163.61 Aligned_cols=222 Identities=12% Similarity=0.114 Sum_probs=158.5
Q ss_pred cEEEEc-CCCceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHHHHcCCC--------cceEEEEEEee-
Q 002152 630 PIFGVD-SSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEE--------DKNVELKLRKF- 699 (959)
Q Consensus 630 ~I~~~D-~dg~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~l~~~~--------~~~~e~~~~~~- 699 (959)
.+++++ .+|+|+++|+.+..++||++++++|+++. +++||++.+.+...+...+.... ...+-.++...
T Consensus 5 F~~vv~~~~G~i~yvS~~~~~~LGy~~~el~G~s~~-d~ihp~D~~~f~~~L~~gl~~~~~~~~~~~~~rsffcR~~rr~ 83 (339)
T 3rty_A 5 FCCVISMHDGIVLYTTPSITDVLGYPRDMWLGRSFI-DFVHLKDRATFASQITTGIPIAESRGSVPKDAKSTFCVMLRRY 83 (339)
T ss_dssp EEEEEETTTCBEEEECTTHHHHHCCCTTSSTTSBGG-GGBCHHHHHHHHHHHHTTSCCC----------CCEEEEEEECC
T ss_pred EEEEEECCCcEEEEEChHHHHHcCCCHHHHCCCcHH-HhcCHHHHHHHHHHHhcCCCCCccccCCCCCCceEEEEEEecc
Confidence 456778 69999999999999999999999999999 99999999877666553321110 11333333110
Q ss_pred -----------eeccCCcEEEEEEEEEEeecC---------CCCEEEEEEEeecchhhHHHHHHHHHHHHHHHHHH-Hhc
Q 002152 700 -----------ELQKQHSVVYILVNACTSRDY---------KNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAII-QSV 758 (959)
Q Consensus 700 -----------~~~~dG~~~~v~v~~~pi~d~---------~g~~~gvv~v~~DITerk~~E~~L~~se~~l~~i~-e~~ 758 (959)
+.......+|+.....++.+. .|....++.+..+++.......+ ++ ...
T Consensus 84 ~~l~s~gy~v~~~~~~~~p~~l~~~~~~~~~e~~~~~~~~~~g~~~~lv~~a~~i~s~~~~p~e----------~~~~~~ 153 (339)
T 3rty_A 84 RGLKSGGFGVIGRPVSYEPFRLGLTFREAPEEARPDNYMVSNGTNMLLVICATPIKSSYKVPDE----------ILSQKS 153 (339)
T ss_dssp C-------------CCEEEEEEEEEEEECCCC----------CCCEEEEEEEEECCCSCSSTTB----------BCCSSC
T ss_pred CCCCcCCcceecccccceeEEEEEEEeccccccccccccccCCceEEEEEEcccCCccccccch----------hhccCC
Confidence 001122334444444555444 56667788888999864322111 10 011
Q ss_pred CCCCCCeeeeCCCCcEEeecHHHHHHhCCCchhhcCCCcccccccccccccChhhHHHHHHHHHhhhcCCCc-----cee
Q 002152 759 NPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQGT-----ENF 833 (959)
Q Consensus 759 ~~~i~~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l~~~~~~~~~-----~~~ 833 (959)
. +.++..|.+|+++|+|+++..++||+++|++|+.+. .+.||+|...+...+.+.+..+.. ...
T Consensus 154 ~---~fi~r~~~dG~~~yvn~~~~~lLGY~peELiG~s~~--------~~vHPdD~~~~~~~~~~~l~~G~~~~~~~~s~ 222 (339)
T 3rty_A 154 P---KFAIRHTATGIISHVDSAAVSALGYLPQDLIGRSIM--------DFYHHEDLSVMKETYETVMKKGQTAGASFCSK 222 (339)
T ss_dssp C---EEEEEEETTCBEEEECTTHHHHHCCCHHHHTTSBGG--------GGBCGGGHHHHHHHHHHHHHHTTSTTCCCBCC
T ss_pred c---eEEEEECCCCeEEEcChhhhcccCCCHHHHcCCcHH--------HEECHHHHHHHHHHHHHHHHcCCcccccccce
Confidence 2 237778999999999999999999999999999755 377899999888888888764433 467
Q ss_pred eEEEEccCCcEEEEEEEEeeeeCCC-CCEEEEEEEEeeccc
Q 002152 834 PFGFFNRQGQFVEVALTASRRTDAE-GKVIGCFCFMQILVP 873 (959)
Q Consensus 834 e~~~~~~dG~~~~v~~~~~pi~d~~-G~i~g~v~i~~DITe 873 (959)
++|++++||.++|+..++++++|.. +++..++|+-+.|+.
T Consensus 223 ~yR~~~kdG~~vWlet~~~~~~np~s~~~~~II~~h~vi~~ 263 (339)
T 3rty_A 223 PYRFLIQNGCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQG 263 (339)
T ss_dssp CEEEECTTSCEEEEEEEEEEEECTTTCSEEEEEEEEEEEEC
T ss_pred EEEEEccCCCEEEEEEEEEEEECCCCCCeeEEEEEEEECCC
Confidence 8999999999999999999999865 567778888777765
No 18
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=99.59 E-value=1.3e-14 Score=137.72 Aligned_cols=127 Identities=17% Similarity=0.126 Sum_probs=101.6
Q ss_pred HHHHHhcCccEEEEcCCC---ceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHHHHcCCCcceEEEEEE
Q 002152 621 VRLIETATAPIFGVDSSG---TINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLR 697 (959)
Q Consensus 621 ~~lie~~~~~I~~~D~dg---~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~~~ 697 (959)
..++++++++|+++|.+| +|+++|+++++++||+.++++|+++. .+.+++........+...+..+.....++.+
T Consensus 2 ~~~~~~~~~~i~~~d~~g~~~~i~~~N~a~~~~~G~~~~el~g~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~- 79 (132)
T 2pr5_A 2 SHMLDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCR-FLQGKHTDPAEVDNIRTALQNKEPVTVQIQN- 79 (132)
T ss_dssp ----CCCCCEEEEECTTSTTCCEEEECHHHHHHHSCCHHHHTTSCGG-GGCCTTCCHHHHHHHHHHHHHTCCEEEEEEE-
T ss_pred hhHHhcCCCcEEEEeCCCCCCcEEEECHHHHHHhCcCHHHHcCCChh-hhCCCCCCHHHHHHHHHHHHcCCCeEEEEEE-
Confidence 357899999999999977 99999999999999999999999986 6666654444334444445444455555555
Q ss_pred eeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEeecchhhHHHHHHHHHHHHHHHHH
Q 002152 698 KFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAI 754 (959)
Q Consensus 698 ~~~~~~dG~~~~v~v~~~pi~d~~g~~~gvv~v~~DITerk~~E~~L~~se~~l~~i 754 (959)
.++||+.+|+.++..|+++.+ +.+++++++|||++|++|++|+.++++++.+
T Consensus 80 ---~~kdG~~~~~~~~~~~~~~~~--~~~~~~~~~DITe~k~~e~~l~~~~~~l~~l 131 (132)
T 2pr5_A 80 ---YKKDGTMFWNELNIDPMEIED--KTYFVGIQNDITKQKEYEKLLEDSLTEITAL 131 (132)
T ss_dssp ---ECTTSCEEEEEEEEEEEEETT--EEEEEEEEEECHHHHHHHHHHHHHHHHHHHT
T ss_pred ---EecCCCeeeeEEEEEeccCCC--eeEEEEEEEeCcHHHHHHHHHHHHHHHHHhc
Confidence 689999999999999998765 8889999999999999999999999888754
No 19
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=99.57 E-value=1.8e-14 Score=134.32 Aligned_cols=117 Identities=14% Similarity=0.055 Sum_probs=96.9
Q ss_pred HHHHHHHHHhcCCCCCCeeeeCCCCcEEeecHHHHHHhCCCchhhcCCCcccccccccccccChhhHHHHHHHHHhhhcC
Q 002152 748 QGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITG 827 (959)
Q Consensus 748 e~~l~~i~e~~~~~i~~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l~~~~~~ 827 (959)
+++|+.++++++. +|+++|.+|+|+++|+++++++||+.++++|++... +.+++........+.+.+..
T Consensus 4 ~~~~~~~~~~~~~---~i~~~d~~g~i~~~N~a~~~~~G~~~~elig~~~~~--------l~~~~~~~~~~~~~~~~~~~ 72 (120)
T 2gj3_A 4 PEIFRQTVEHAPI---AISITDLKANILYANRAFRTITGYGSEEVLGKNESI--------LSNGTTPRLVYQALWGRLAQ 72 (120)
T ss_dssp HHHHHHHHHHCSS---EEEEECTTCBEEEECHHHHHHHCCCTTGGGGCBGGG--------GCCTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCC---eEEEECCCCCEEeehHHHHHHHCcCHHHHcCCCHHH--------cCCCCCCHHHHHHHHHHHHc
Confidence 4678899999875 499999999999999999999999999999997543 22233223333445555556
Q ss_pred CCcceeeEEEEccCCcEEEEEEEEeeeeCCCCCEEEEEEEEeeccccc
Q 002152 828 QGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDL 875 (959)
Q Consensus 828 ~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~i~g~v~i~~DITerk 875 (959)
+..+..++..++++|+.+|+.++..|++|.+|.+.+++++.+|||++|
T Consensus 73 ~~~~~~e~~~~~~dG~~~~~~~~~~pi~~~~g~~~~~v~~~~DITe~k 120 (120)
T 2gj3_A 73 KKPWSGVLVNRRKDKTLYLAELTVAPVLNEAGETIYYLGMHRDTSELH 120 (120)
T ss_dssp TCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCSCC
T ss_pred CCCEEEEEEEEcCCCCEEEEEEEEEEEECCCCCEEEEEEEeccCcccC
Confidence 667888899999999999999999999999999999999999999976
No 20
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=99.57 E-value=1.7e-14 Score=134.43 Aligned_cols=116 Identities=14% Similarity=0.031 Sum_probs=97.8
Q ss_pred HHHHHHHHhcCccEEEEcCCCceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHHHHcCCCcceEEEEEE
Q 002152 618 CEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLR 697 (959)
Q Consensus 618 ~~l~~lie~~~~~I~~~D~dg~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~~~ 697 (959)
++++.++++++++|+++|.+|+|+++|+++++++||+.++++|+++. .+.+++........+...+..+.....++..
T Consensus 5 ~~~~~~~~~~~~~i~~~d~~g~i~~~N~a~~~~~G~~~~elig~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~- 82 (120)
T 2gj3_A 5 EIFRQTVEHAPIAISITDLKANILYANRAFRTITGYGSEEVLGKNES-ILSNGTTPRLVYQALWGRLAQKKPWSGVLVN- 82 (120)
T ss_dssp HHHHHHHHHCSSEEEEECTTCBEEEECHHHHHHHCCCTTGGGGCBGG-GGCCTTSCHHHHHHHHHHHHTTCCEEEEEEE-
T ss_pred HHHHHHHHhCCCeEEEECCCCCEEeehHHHHHHHCcCHHHHcCCCHH-HcCCCCCCHHHHHHHHHHHHcCCCEEEEEEE-
Confidence 56889999999999999999999999999999999999999999987 7776655444444444445445555556655
Q ss_pred eeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEeecchhhH
Q 002152 698 KFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEK 738 (959)
Q Consensus 698 ~~~~~~dG~~~~v~v~~~pi~d~~g~~~gvv~v~~DITerk 738 (959)
.+++|+.+|+.++..|++|.+|.+.+++++++|||++|
T Consensus 83 ---~~~dG~~~~~~~~~~pi~~~~g~~~~~v~~~~DITe~k 120 (120)
T 2gj3_A 83 ---RRKDKTLYLAELTVAPVLNEAGETIYYLGMHRDTSELH 120 (120)
T ss_dssp ---ECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCSCC
T ss_pred ---EcCCCCEEEEEEEEEEEECCCCCEEEEEEEeccCcccC
Confidence 68999999999999999999999999999999999975
No 21
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=99.56 E-value=1.6e-14 Score=134.72 Aligned_cols=114 Identities=9% Similarity=0.047 Sum_probs=97.7
Q ss_pred HHHHHhcCCCCCCeeeeCCCCcEEeecHHHHHHhCCCchhhcCCCcccccccccccccChhhHHHHHHHHHhhhc-CCCc
Q 002152 752 EAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGIT-GQGT 830 (959)
Q Consensus 752 ~~i~e~~~~~i~~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l~~~~~-~~~~ 830 (959)
..++++++.+ |+..|.+|+++++|+++++++||++++++|+.+. .+.||++...+...+.+.+. ++..
T Consensus 5 ~ll~e~~~d~---i~~~d~~g~i~~~n~~~~~~~G~~~~el~g~~~~--------~~i~p~d~~~~~~~~~~~~~~~~~~ 73 (121)
T 3f1p_B 5 GLNVCQPTRF---ISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIV--------EFCHPEDQQLLRDSFQQVVKLKGQV 73 (121)
T ss_dssp ---CCCCCEE---EEEECTTSBEEEECTTHHHHHSCCGGGTTTSBGG--------GGBCTTTHHHHHHHHHHHTTSTTCC
T ss_pred cceecCCCce---EEEECCCceEEEECcchhhhhCCChHHHcCCCHH--------HeECHHHHHHHHHHHHHHHhcCCCc
Confidence 4567777654 9999999999999999999999999999999754 36779999988888888874 5557
Q ss_pred ceeeEEEEccCCcEEEEEEEEeeeeCC-CCCEEEEEEEEeecccccH
Q 002152 831 ENFPFGFFNRQGQFVEVALTASRRTDA-EGKVIGCFCFMQILVPDLQ 876 (959)
Q Consensus 831 ~~~e~~~~~~dG~~~~v~~~~~pi~d~-~G~i~g~v~i~~DITerk~ 876 (959)
+..++++++++|+++|+..++.|+.|. +|.+.+++++.+|||++|+
T Consensus 74 ~~~e~r~~~~dG~~~w~~~~~~~~~~~~~g~~~~iv~~~~DIT~~kq 120 (121)
T 3f1p_B 74 LSVMFRFRSKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNSSQ 120 (121)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEECCTTCCCCCEEEEEEEECCCC--
T ss_pred ccEEEEEEecCCCEEEEEEEEEEEECCCCCceeEEEEEeEEcccccC
Confidence 889999999999999999999999987 8899999999999999886
No 22
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=99.56 E-value=5.5e-15 Score=147.57 Aligned_cols=136 Identities=10% Similarity=-0.017 Sum_probs=113.2
Q ss_pred HHHHHHHHHhcCccEEEEcCC---CceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHHHHcCCCcceEE
Q 002152 617 ACEMVRLIETATAPIFGVDSS---GTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVE 693 (959)
Q Consensus 617 ~~~l~~lie~~~~~I~~~D~d---g~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e 693 (959)
.++++.++++++++|+++|.+ |+|+++|+++++++||+.++++|+++. .+++++........+...+..+.....+
T Consensus 6 ~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e 84 (176)
T 4hia_A 6 FEKIRAVFDRSGVALTLVDMSLPEQPVVLANPPFLRMTGYTEGQILGFNCR-FLQRGDENAQARADIRDALKLGRELQVV 84 (176)
T ss_dssp HHHHHHHHHHCSSCCEEEETTSTTCCEEEECHHHHHHHTCCHHHHTTSCGG-GGCCTTCCHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHhcCCCcEEEEecCCCCCcEEEECHHHHHHHCcCHHHHcCCCcc-eeeCCCCCHHHHHHHHHHHHcCCceEEE
Confidence 356889999999999999999 999999999999999999999999987 7888877766666676666666665666
Q ss_pred EEEEeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEeecchhhHHHHHHHHHHHHH-HHHHHHh
Q 002152 694 LKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGD-YEAIIQS 757 (959)
Q Consensus 694 ~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~~~gvv~v~~DITerk~~E~~L~~se~~-l~~i~e~ 757 (959)
+.. .+++|..+|+.++..|+++.+|.+.+++++++|||++|++|+++...... +..+.+-
T Consensus 85 ~~~----~~~dG~~~~~~~~~~pi~~~~g~~~~~~~~~~DITe~k~~e~~~~~a~~d~LtgL~NR 145 (176)
T 4hia_A 85 LRN----YRANDEPFDNLLFLHPVGGRPDAPDYFLGSQFELGRSGNSEEAAAAGHAGALTGELAR 145 (176)
T ss_dssp EEE----ECTTCCEEEEEEEEEEESSBTTBCSEEEEEEEEESSSGGGHHHHHHHHHHHHHHHHHH
T ss_pred EEE----EcCCCCEEEEEEEEEEeeCCCCCeEEEEEEEEECcHhhHHHHHHHHhhhhHHhhhhhh
Confidence 665 68899999999999999999999999999999999999999884333322 4444444
No 23
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=99.55 E-value=7.5e-15 Score=157.08 Aligned_cols=175 Identities=13% Similarity=0.061 Sum_probs=126.1
Q ss_pred cchHHHHHHHHHHHHHHHhcCccEEEEcC---CCceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHHHH
Q 002152 608 QGVDELSSVACEMVRLIETATAPIFGVDS---SGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRAL 684 (959)
Q Consensus 608 ~~~~eL~~~~~~l~~lie~~~~~I~~~D~---dg~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~l 684 (959)
..++++++.+++++.++++++++|+++|. +|+|+++|+++++++||+.++++|+++. .+.++++.......+...+
T Consensus 53 ~~~~~l~~~~~~~~~i~~~~~~~i~~~d~~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~-~l~~~~~~~~~~~~~~~~l 131 (258)
T 3p7n_A 53 DTRVEVQPPAQWVLDLIEASPIASVVSDPRLADNPLIAINQAFTDLTGYSEEECVGRNCR-FLAGSGTEPWLTDKIRQGV 131 (258)
T ss_dssp --------CCHHHHHHHHTCSSEEEEECTTSTTCCEEEECHHHHHHHCCCGGGTTTSCGG-GGCCTTCCHHHHHHHHHHH
T ss_pred hhHHHHHhHHHHHHHHHhcCCccEEEEcCCCCCCcEEEEhHHHHHHcCCCHHHHCCCChh-hccCCCCchhHHHHHHHHH
Confidence 34556777778899999999999999999 8999999999999999999999999987 8888877766666666666
Q ss_pred cCCCcceEEEEEEeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEeecchhh--HHHHHHHHHHHHHHHHHHHhcCCCC
Q 002152 685 LGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHE--KVLMDKFIRLQGDYEAIIQSVNPLI 762 (959)
Q Consensus 685 ~~~~~~~~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~~~gvv~v~~DITer--k~~E~~L~~se~~l~~i~e~~~~~i 762 (959)
..+.....++.+ .+++|..+|+.++..|++|.+|.+.+++++++|||++ ++.+.++...+..+..+.+....
T Consensus 132 ~~~~~~~~e~~~----~~~dG~~~~~~~~~~pi~d~~g~~~~~v~~~~DITerk~~~~e~~~~~~~~~l~~L~~r~~~-- 205 (258)
T 3p7n_A 132 REHKPVLVEILN----YKKDGTPFRNAVLVAPIYDDDDELLYFLGSQVEVDDDQPNMGMARRERAAEMLKTLSPRQLE-- 205 (258)
T ss_dssp HHTCCEEEEEEE----ECTTSCEEEEEEEEEEEECTTSCSEEEEEEEEEC-------CHHHHHHHHHHHTTSCHHHHH--
T ss_pred HcCCCeEEEEEE----EcCCCCEEEEeeEEEEEEcCCCCEEEEEEEeeecchhhhhhhHHHHHHHHHHHhhcCHHHHH--
Confidence 666666666665 7899999999999999999999999999999999999 55555555554444322221110
Q ss_pred CCeeeeCCCCcEEeecHHHHHHhCCCchhhcC
Q 002152 763 PPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794 (959)
Q Consensus 763 ~~I~~~D~~g~i~~~N~a~~~l~G~~~eeviG 794 (959)
++.....| ..|...+..+|++...+..
T Consensus 206 --i~~~~~~g---~~~~eia~~l~~s~~tv~~ 232 (258)
T 3p7n_A 206 --VTTLVASG---LRNKEVAARLGLSEKTVKM 232 (258)
T ss_dssp --HHHHHHTT---CCHHHHHHHHTCCHHHHHH
T ss_pred --HHHHHHcC---CCHHHHHHHHCcCHHHHHH
Confidence 11111123 3789999999999887754
No 24
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=99.54 E-value=1.6e-14 Score=134.65 Aligned_cols=115 Identities=12% Similarity=0.168 Sum_probs=100.0
Q ss_pred HHHHHHhcCccEEEEcCCCceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHHHHc-CCCcceEEEEEEe
Q 002152 620 MVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALL-GEEDKNVELKLRK 698 (959)
Q Consensus 620 l~~lie~~~~~I~~~D~dg~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~l~-~~~~~~~e~~~~~ 698 (959)
...+++++++.|+.+|.+|+++++|+++++++||++++++|+++. +++||++...+...+..++. ++.....++++
T Consensus 4 ~~ll~e~~~d~i~~~d~~g~i~~~n~~~~~~~G~~~~el~g~~~~-~~i~p~d~~~~~~~~~~~~~~~~~~~~~e~r~-- 80 (121)
T 3f1p_B 4 KGLNVCQPTRFISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIV-EFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRF-- 80 (121)
T ss_dssp ----CCCCCEEEEEECTTSBEEEECTTHHHHHSCCGGGTTTSBGG-GGBCTTTHHHHHHHHHHHTTSTTCCEEEEEEE--
T ss_pred ccceecCCCceEEEECCCceEEEECcchhhhhCCChHHHcCCCHH-HeECHHHHHHHHHHHHHHHhcCCCcccEEEEE--
Confidence 346789999999999999999999999999999999999999998 99999999988888888874 44556777777
Q ss_pred eeeccCCcEEEEEEEEEEeecC-CCCEEEEEEEeecchhhHH
Q 002152 699 FELQKQHSVVYILVNACTSRDY-KNNVKGVCFVGQDITHEKV 739 (959)
Q Consensus 699 ~~~~~dG~~~~v~v~~~pi~d~-~g~~~gvv~v~~DITerk~ 739 (959)
++++|+.+|+.++..|++|. +|.+.+++++.+|||++|+
T Consensus 81 --~~~dG~~~w~~~~~~~~~~~~~g~~~~iv~~~~DIT~~kq 120 (121)
T 3f1p_B 81 --RSKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNSSQ 120 (121)
T ss_dssp --ECTTSCEEEEEEEEEEECCTTCCCCCEEEEEEEECCCC--
T ss_pred --EecCCCEEEEEEEEEEEECCCCCceeEEEEEeEEcccccC
Confidence 78999999999999999987 7889999999999999985
No 25
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=99.54 E-value=1.8e-14 Score=141.56 Aligned_cols=133 Identities=16% Similarity=0.122 Sum_probs=108.4
Q ss_pred ccchHHHHHHHHHHHHHHHhcCccEEEEcC---CCceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHHH
Q 002152 607 MQGVDELSSVACEMVRLIETATAPIFGVDS---SGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRA 683 (959)
Q Consensus 607 ~~~~~eL~~~~~~l~~lie~~~~~I~~~D~---dg~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~ 683 (959)
++.+++++....++..++++++++++++|. +|+|+++|+++++++|++.++++|+++. .+.+++........+...
T Consensus 24 ~~~~~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~g~~~~-~l~~~~~~~~~~~~~~~~ 102 (166)
T 3ue6_A 24 SKANRILEDPDYSLVKALQMAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCR-FLQGPETDPRAVDKIRNA 102 (166)
T ss_dssp -------CCCCCHHHHHHHHTTSCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG-GGCCTTSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcCCceEEEEEccCCCCcEEEECHHHHHHhCcCHHHHcCCCHh-heeCCCCCHHHHHHHHHH
Confidence 334455556667789999999999999999 7999999999999999999999999987 788777666666666666
Q ss_pred HcCCCcceEEEEEEeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEeecchhhHHHHHHH
Q 002152 684 LLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKF 744 (959)
Q Consensus 684 l~~~~~~~~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~~~gvv~v~~DITerk~~E~~L 744 (959)
+..+.....++.+ .+++|..+|+.++..|+++.+|.+.|++++++|||++|+++...
T Consensus 103 ~~~~~~~~~e~~~----~~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DITe~k~~~~~~ 159 (166)
T 3ue6_A 103 ITKGVDTSVCLLN----YRQDGTTFWNLFFVAGLRDSKGNIVNYVGVQSKVSEDYAKLLVN 159 (166)
T ss_dssp HHHTCCEEEEEEE----ECTTSCEEEEEEEEEEEECTTSCEEEEEEECCBCCHHHHHHHHH
T ss_pred HhcCCceEEEEEE----EcCCCCEEEEEEEEEeeeCCCCCEEEEEEEEEechHHHHHHHHH
Confidence 6555555566665 67899999999999999999999999999999999999887663
No 26
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=99.53 E-value=6.6e-14 Score=136.89 Aligned_cols=138 Identities=17% Similarity=0.176 Sum_probs=110.8
Q ss_pred HHHHHHHHHhcCccEEEEc-CCCceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHHHHcCCCc-ceEEE
Q 002152 617 ACEMVRLIETATAPIFGVD-SSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEED-KNVEL 694 (959)
Q Consensus 617 ~~~l~~lie~~~~~I~~~D-~dg~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~l~~~~~-~~~e~ 694 (959)
+++|+.+++++|++++++| .+|+|+++|+++++++|++ +++|+++. +++++.....+...+..++..+.. ...+.
T Consensus 16 ~~~~~~~~~~~~~~i~~~d~~~~~i~~~N~~~~~~~g~~--~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 92 (158)
T 3k3c_A 16 AEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLL--DTVGQPAR-EVYPELEGQQIYEMLDRVYQTGEPQSGSEW 92 (158)
T ss_dssp HHHHHHHHHHCSSEEEEEETTTTEEEEECHHHHHHCTTC--CSTTSBHH-HHSGGGGGTTHHHHHHHHHHHCCCEEEEEE
T ss_pred HHHHHHHHhcCCceEEEEECCCcEeHHHHHHHHHHcCCc--hhcCCcHH-HhCCchhHHHHHHHHHHHHHhCCcccccce
Confidence 4578999999999999999 9999999999999999999 89999998 888887666666777777744443 23333
Q ss_pred EEEeeeeccC-CcEEEEEEEEEEeecCCCCEEEEEEEeecchhhHHHHHHHHHHHHHHHHHHHhc
Q 002152 695 KLRKFELQKQ-HSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSV 758 (959)
Q Consensus 695 ~~~~~~~~~d-G~~~~v~v~~~pi~d~~g~~~gvv~v~~DITerk~~E~~L~~se~~l~~i~e~~ 758 (959)
.+... ...+ |..+|+.++..|+++.+|.+.|++++++|||++|++|++|++...+++..++++
T Consensus 93 ~~~~~-~~~~~g~~~~~~~~~~pi~~~~g~~~g~~~~~~DITe~k~~e~~l~~~~~~l~~~v~~~ 156 (158)
T 3k3c_A 93 RLQTD-YDGSGVEERYFDFVVTPRRRADGSIEGVQLIVDDVTSRVRARQAAEARVEELSERYRNV 156 (158)
T ss_dssp EEEEE-SSSSCEEEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHC----
T ss_pred eEEec-cCCCCcceEEEEEEEEEeECCCCCEEEEEEEEEehhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33211 1223 778999999999999999999999999999999999999999988888877765
No 27
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=99.52 E-value=3.9e-14 Score=131.21 Aligned_cols=122 Identities=16% Similarity=0.173 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHhcCccEEEEcCCCceehhcHHHHHHhCCCcccccC--CCccccccCCCchHHHHHHHHHHHcCCCcc
Q 002152 613 LSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMG--KSLIDEVVHEESQGAVENLICRALLGEEDK 690 (959)
Q Consensus 613 L~~~~~~l~~lie~~~~~I~~~D~dg~iv~~N~~~~~l~G~~~eeliG--k~~~~~l~~~~~~~~~~~~l~~~l~~~~~~ 690 (959)
|+.++++++.+++.+++++|.+|.+|.++++|+++++++|++.+++.| ..+. .+++|++...+...+..++.++...
T Consensus 2 l~~~~~~l~~~~~~~~~~i~~~d~~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~ 80 (125)
T 3nja_A 2 NAMAEKLLHTAESDAGIGSWVLHMESGRLEWSQAVHDIFGTDSATFDATEDAYF-QRVHPDDRARVRRELDRHVLGDRPF 80 (125)
T ss_dssp ---------------CCEEEEEETTTTEEEECHHHHHHHTCCTTTCCCBHHHHH-HHBCTTTHHHHHHHHHHHHHSCCCE
T ss_pred cHHHHHHHHHHHHhCCeeEEEEEcCCCcEEECHHHHHHhCCCcccccccHHHHH-hhcChhHHHHHHHHHHHHHhcCCCc
Confidence 455667889999999999999999999999999999999999999998 5566 7889999998888888888887777
Q ss_pred eEEEEEEeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEeecchhhHH
Q 002152 691 NVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKV 739 (959)
Q Consensus 691 ~~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~~~gvv~v~~DITerk~ 739 (959)
..++++ .+++|..+|+.+...|+++.+|.+.+++++++|||++|+
T Consensus 81 ~~e~~~----~~~~g~~~~~~~~~~~~~~~~g~~~~~~g~~~DITe~k~ 125 (125)
T 3nja_A 81 DVEYRI----VRPDGQVRELLERNHIQRQASGQVDHLWGTVIDMTEHKQ 125 (125)
T ss_dssp EEEEEE----ECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCC---
T ss_pred eEEEEE----ECCCCCEEEEEEeeEEEECCCCCEEEEEEEEEecccccC
Confidence 777777 678999999999999999999999999999999999984
No 28
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=99.52 E-value=3.6e-14 Score=131.28 Aligned_cols=106 Identities=8% Similarity=0.028 Sum_probs=96.2
Q ss_pred CeeeeCCCCcEEeecHHHHHHhCCCchhhcCCCcccccccccccccChhhHHHHHHHHHhhhcCCCcceeeEEEEccCCc
Q 002152 764 PIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQGQ 843 (959)
Q Consensus 764 ~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l~~~~~~~~~~~~e~~~~~~dG~ 843 (959)
.++..|.+|+++++|+++++++||++++++|+.+. .+.||++...+...+.+++.++..+..++++++++|+
T Consensus 11 ~i~~~d~~g~i~~~n~~~~~~~Gy~~~el~g~~~~--------~~~~p~d~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~ 82 (117)
T 3f1p_A 11 FLSEHSMDMKFTYCDDRITELIGYHPEELLGRSAY--------EFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGG 82 (117)
T ss_dssp EEEEECTTCBEEEECTHHHHHHCCCHHHHTTSBGG--------GGBCGGGHHHHHHHHHHHHHHSEEECCCEEEECTTSS
T ss_pred EEEEECCCceEEEECcChhhhhCCCHHHHcCCchh--------heECHHHHHHHHHHHHHHHhCCCeeeeEEEEEecCCC
Confidence 48899999999999999999999999999998754 3677999998888888888877778889999999999
Q ss_pred EEEEEEEEeeeeCC-CCCEEEEEEEEeecccccHH
Q 002152 844 FVEVALTASRRTDA-EGKVIGCFCFMQILVPDLQP 877 (959)
Q Consensus 844 ~~~v~~~~~pi~d~-~G~i~g~v~i~~DITerk~~ 877 (959)
.+|+..++.|+.|. +|.+.+++++.+|||++|++
T Consensus 83 ~~w~~~~~~~~~d~~~g~~~~iv~~~~DITer~~~ 117 (117)
T 3f1p_A 83 YVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEKN 117 (117)
T ss_dssp EEEEEEEEEEEEETTTTEEEEEEEEEEECSCCBC-
T ss_pred EEEEEEeeEEEECCCCCCceEEEEEeeeccccccC
Confidence 99999999999998 89999999999999999863
No 29
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=99.51 E-value=6e-14 Score=129.91 Aligned_cols=124 Identities=11% Similarity=0.056 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCCeeeeCCCCcEEeecHHHHHHhCCCchhhcCCCcccccccccccccChhhHHHHHHHHHh
Q 002152 744 FIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQ 823 (959)
Q Consensus 744 L~~se~~l~~i~e~~~~~i~~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l~~ 823 (959)
|++++++|+.++++++. ++|.+|.+|+++++|+++++++|++.+++.|.. ..+..+.+|++...+...+.+
T Consensus 2 l~~~~~~l~~~~~~~~~---~i~~~d~~~~~~~~n~~~~~~~G~~~~~~~~~~------~~~~~~~~~~d~~~~~~~~~~ 72 (125)
T 3nja_A 2 NAMAEKLLHTAESDAGI---GSWVLHMESGRLEWSQAVHDIFGTDSATFDATE------DAYFQRVHPDDRARVRRELDR 72 (125)
T ss_dssp ---------------CC---EEEEEETTTTEEEECHHHHHHHTCCTTTCCCBH------HHHHHHBCTTTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCe---eEEEEEcCCCcEEECHHHHHHhCCCcccccccH------HHHHhhcChhHHHHHHHHHHH
Confidence 56778899999999875 499999999999999999999999999998832 113346778999888888888
Q ss_pred hhcCCCcceeeEEEEccCCcEEEEEEEEeeeeCCCCCEEEEEEEEeecccccH
Q 002152 824 GITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQ 876 (959)
Q Consensus 824 ~~~~~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~i~g~v~i~~DITerk~ 876 (959)
++.++.....++++.+++|+.+|+..++.|+.+.+|.+.+++++++|||++|+
T Consensus 73 ~~~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~g~~~DITe~k~ 125 (125)
T 3nja_A 73 HVLGDRPFDVEYRIVRPDGQVRELLERNHIQRQASGQVDHLWGTVIDMTEHKQ 125 (125)
T ss_dssp HHHSCCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCC---
T ss_pred HHhcCCCceEEEEEECCCCCEEEEEEeeEEEECCCCCEEEEEEEEEecccccC
Confidence 88888888999999999999999999999999999999999999999999874
No 30
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=99.51 E-value=2.8e-13 Score=148.10 Aligned_cols=224 Identities=8% Similarity=-0.004 Sum_probs=154.3
Q ss_pred HHHhcCccEEEEcCC-CceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHHH--------------HcCC
Q 002152 623 LIETATAPIFGVDSS-GTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRA--------------LLGE 687 (959)
Q Consensus 623 lie~~~~~I~~~D~d-g~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~--------------l~~~ 687 (959)
+++++...+++++.+ |+|+|+|+.+..++||+.++++|+++. +++||+|...+...+... ....
T Consensus 31 ~L~aldgF~~vvs~~~G~i~yvS~~~~~~Lg~~~~el~g~s~~-d~ihp~D~~~f~~ql~~~~lP~~~~~~~~~~~~~~~ 109 (317)
T 4dj3_A 31 TSKNTDTFAAVFSFLSGRLVHISEQAALILNSKRGFLKSVHFV-DLLAPQDVRAFYAHTAPTQLPFWNNWTQRASQYECA 109 (317)
T ss_dssp HTSCTTEEEEEEETTTCBEEEECTTHHHHTTCCHHHHHTSBGG-GGBCGGGHHHHHHHTCTTTCCCCC----------CC
T ss_pred HHhccCCEEEEEEcCCcEEEEECCHHHHHcCCCHHHHcCCchh-hhcChhhHHHHHHhhcccCCCCcCCCcccccccCCC
Confidence 578888888899986 999999999999999999999999999 999999998876654100 1112
Q ss_pred CcceEEEEEEeeeeccCCcEEEEEEEEEEe--ec---CCCCEEEEEEEeecchhhHHHHHHHHHHHHHHHHHHHhcCCCC
Q 002152 688 EDKNVELKLRKFELQKQHSVVYILVNACTS--RD---YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLI 762 (959)
Q Consensus 688 ~~~~~e~~~~~~~~~~dG~~~~v~v~~~pi--~d---~~g~~~gvv~v~~DITerk~~E~~L~~se~~l~~i~e~~~~~i 762 (959)
....+-++++.....++.++.++...+... .. .++....++.+.+=.+..+..+. .+.. +.
T Consensus 110 ~~rsF~CRmr~g~~~~~~~y~~~~~~g~l~~~~~~~~~~~~~~clv~v~~~~~~~~~~~~-----------~~~~-~~-- 175 (317)
T 4dj3_A 110 PAKPFFCRICGGGDREKRHYSPFRILPYLVHVHSSAQPEPEPCCLTLVEKIHSGYEAPRI-----------PVDK-RI-- 175 (317)
T ss_dssp CCCCEEEEECCCCCSSSCCCEEEEEEEEEEECCCCSSSCSCEEEEEEEEECCCTTSSSCC-----------CGGG-CE--
T ss_pred CCceEEEEEeCCCCCCCCceEEEEEEeEEEeccCCCCCCCCceEEEEEEecCCCcCCCCc-----------ccCC-Cc--
Confidence 334555666432111222334444443221 11 12222223333322221110000 1111 12
Q ss_pred CCeeeeCCCCcEEeecHHHHHHhCCCchhhcCCCcccccccccccccChhhHHHHHHHHHhhhcCCCc---ceeeEEEEc
Q 002152 763 PPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQGT---ENFPFGFFN 839 (959)
Q Consensus 763 ~~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l~~~~~~~~~---~~~e~~~~~ 839 (959)
-+...+.+|+++++|+++..++||.++|++|+.+. .+.||+|...+...+.+.+.++.. ...++|+++
T Consensus 176 -Fitrh~~dG~~~yvs~~~~~lLGY~peELig~s~~--------~~vHPdD~~~~~~~~~~~l~~~~~~~f~s~~yR~~~ 246 (317)
T 4dj3_A 176 -FTTTHTPGCVFLEVDERAVPLLGYLPQDLIGTSIL--------TYLHPEDRPLMVAIHQKVLKYAGHPPFEHSPVRFCT 246 (317)
T ss_dssp -EEEEECTTSBEEEECTTHHHHHSCCHHHHTTSBGG--------GGBCTTTTTHHHHHHHHHHHTTTSCCEECCCEEEEC
T ss_pred -eEEEecCCCeEEEEChHHhhhcCcChHHHcCCCHH--------HeECHHHHHHHHHHHHHHHHcCCCccccceEEEEEc
Confidence 26678899999999999999999999999999855 377899999988888888876544 468999999
Q ss_pred cCCcEEEEEEEEeeeeCC-CCCEEEEEEEEee
Q 002152 840 RQGQFVEVALTASRRTDA-EGKVIGCFCFMQI 870 (959)
Q Consensus 840 ~dG~~~~v~~~~~pi~d~-~G~i~g~v~i~~D 870 (959)
+||.++|+.....+++|. .+++..++|.-+-
T Consensus 247 kdG~~vwvet~~~~~~np~s~~~e~II~~h~v 278 (317)
T 4dj3_A 247 QNGEYVILDSSWSSFVNPWSRKVSFIIGRHKV 278 (317)
T ss_dssp TTSCEEEEEEEEEEEECSSSCCEEEEEEEEEE
T ss_pred cCCCEEEEEEEEEEEECCCCCcccEEEEEEEe
Confidence 999999999999999986 4666667776553
No 31
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=99.51 E-value=1.2e-13 Score=131.02 Aligned_cols=122 Identities=9% Similarity=0.055 Sum_probs=93.0
Q ss_pred HHHHhcCCCCCCeeeeCCCC---cEEeecHHHHHHhCCCchhhcCCCcccccccccccccChhhHHHHHHHHHhhhcCCC
Q 002152 753 AIIQSVNPLIPPIFASDENA---CCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQG 829 (959)
Q Consensus 753 ~i~e~~~~~i~~I~~~D~~g---~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l~~~~~~~~ 829 (959)
.++++++. +|+++|.+| +|+++|+++++++||+.++++|++... +.+++........+.+.+..+.
T Consensus 3 ~~~~~~~~---~i~~~d~~g~~~~i~~~N~a~~~~~G~~~~el~g~~~~~--------l~~~~~~~~~~~~~~~~~~~~~ 71 (132)
T 2pr5_A 3 HMLDHVRV---GVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRF--------LQGKHTDPAEVDNIRTALQNKE 71 (132)
T ss_dssp ---CCCCC---EEEEECTTSTTCCEEEECHHHHHHHSCCHHHHTTSCGGG--------GCCTTCCHHHHHHHHHHHHHTC
T ss_pred hHHhcCCC---cEEEEeCCCCCCcEEEECHHHHHHhCcCHHHHcCCChhh--------hCCCCCCHHHHHHHHHHHHcCC
Confidence 46777764 599999876 999999999999999999999997532 2223322223334445555555
Q ss_pred cceeeEEEEccCCcEEEEEEEEeeeeCCCCCEEEEEEEEeecccccHHHHHHHhHHHH
Q 002152 830 TENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDM 887 (959)
Q Consensus 830 ~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~i~g~v~i~~DITerk~~Elelq~~ae~ 887 (959)
.+..+++++++||+.+|+.++..|+.+.+ +.+++++.+|||++|++|.++++..++
T Consensus 72 ~~~~e~~~~~kdG~~~~~~~~~~~~~~~~--~~~~~~~~~DITe~k~~e~~l~~~~~~ 127 (132)
T 2pr5_A 72 PVTVQIQNYKKDGTMFWNELNIDPMEIED--KTYFVGIQNDITKQKEYEKLLEDSLTE 127 (132)
T ss_dssp CEEEEEEEECTTSCEEEEEEEEEEEEETT--EEEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEecCCCeeeeEEEEEeccCCC--eeEEEEEEEeCcHHHHHHHHHHHHHHH
Confidence 78888899999999999999999998776 888999999999999998776654443
No 32
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=99.50 E-value=4.2e-14 Score=138.97 Aligned_cols=135 Identities=10% Similarity=0.069 Sum_probs=105.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeeCC---CCcEEeecHHHHHHhCCCchhhcCCCcccccccccccccCh
Q 002152 735 THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDE---NACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQ 811 (959)
Q Consensus 735 Terk~~E~~L~~se~~l~~i~e~~~~~i~~I~~~D~---~g~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~ 811 (959)
..+++++.+++..+.+++.++++++.+ ++++|. +|+|+++|+++++++||+.++++|+++.. +.++
T Consensus 21 ~~~~~~~~~l~~~~~~~~~~~~~~~~~---i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~g~~~~~--------l~~~ 89 (166)
T 3ue6_A 21 DNPSKANRILEDPDYSLVKALQMAQQN---FVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRF--------LQGP 89 (166)
T ss_dssp ----------CCCCCHHHHHHHHTTSC---EEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGG--------GCCT
T ss_pred hhhhHHHHHHHHHHHHHHHHHhcCCce---EEEEEccCCCCcEEEECHHHHHHhCcCHHHHcCCCHhh--------eeCC
Confidence 455667777888888999999999854 999999 79999999999999999999999998542 2334
Q ss_pred hhHHHHHHHHHhhhcCCCcceeeEEEEccCCcEEEEEEEEeeeeCCCCCEEEEEEEEeecccccHHHHH
Q 002152 812 DMLTKFMILLYQGITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALE 880 (959)
Q Consensus 812 e~~~~~~~~l~~~~~~~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~i~g~v~i~~DITerk~~Ele 880 (959)
++...+...+...+..+..+..++.+.+++|..+|+.++..|+.+.+|.+.+++++++|||++|+++..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DITe~k~~~~~ 158 (166)
T 3ue6_A 90 ETDPRAVDKIRNAITKGVDTSVCLLNYRQDGTTFWNLFFVAGLRDSKGNIVNYVGVQSKVSEDYAKLLV 158 (166)
T ss_dssp TSCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEECCBCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCceEEEEEEEcCCCCEEEEEEEEEeeeCCCCCEEEEEEEEEechHHHHHHHH
Confidence 444445555666666666788899999999999999999999999999999999999999998877644
No 33
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=99.50 E-value=1.4e-13 Score=137.23 Aligned_cols=123 Identities=7% Similarity=-0.070 Sum_probs=104.7
Q ss_pred HHHHHHHHHHhcCCCCCCeeeeCCC---CcEEeecHHHHHHhCCCchhhcCCCcccccccccccccChhhHHHHHHHHHh
Q 002152 747 LQGDYEAIIQSVNPLIPPIFASDEN---ACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQ 823 (959)
Q Consensus 747 se~~l~~i~e~~~~~i~~I~~~D~~---g~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l~~ 823 (959)
...+++.++++++.+ |+++|.+ |+|+++|+++++++||+.++++|+++.. +.++++...+...+..
T Consensus 5 ~~~~~~~~~~~~~~~---i~~~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~--------~~~~~~~~~~~~~~~~ 73 (176)
T 4hia_A 5 QFEKIRAVFDRSGVA---LTLVDMSLPEQPVVLANPPFLRMTGYTEGQILGFNCRF--------LQRGDENAQARADIRD 73 (176)
T ss_dssp HHHHHHHHHHHCSSC---CEEEETTSTTCCEEEECHHHHHHHTCCHHHHTTSCGGG--------GCCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCc---EEEEecCCCCCcEEEECHHHHHHHCcCHHHHcCCCcce--------eeCCCCCHHHHHHHHH
Confidence 345788999999854 9999999 9999999999999999999999998542 3334555555666666
Q ss_pred hhcCCCcceeeEEEEccCCcEEEEEEEEeeeeCCCCCEEEEEEEEeecccccHHHHH
Q 002152 824 GITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALE 880 (959)
Q Consensus 824 ~~~~~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~i~g~v~i~~DITerk~~Ele 880 (959)
.+..+..+..+++..+++|+.+|+.+++.|+.+.+|.+.+++++++|||++|++|.+
T Consensus 74 ~~~~~~~~~~e~~~~~~dG~~~~~~~~~~pi~~~~g~~~~~~~~~~DITe~k~~e~~ 130 (176)
T 4hia_A 74 ALKLGRELQVVLRNYRANDEPFDNLLFLHPVGGRPDAPDYFLGSQFELGRSGNSEEA 130 (176)
T ss_dssp HHHHTCCEEEEEEEECTTCCEEEEEEEEEEESSBTTBCSEEEEEEEEESSSGGGHHH
T ss_pred HHHcCCceEEEEEEEcCCCCEEEEEEEEEEeeCCCCCeEEEEEEEEECcHhhHHHHH
Confidence 776667888899999999999999999999999999999999999999999988865
No 34
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=99.50 E-value=8.8e-14 Score=130.19 Aligned_cols=123 Identities=16% Similarity=0.140 Sum_probs=98.1
Q ss_pred HHHhcCccEEEEcC---CCceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHHHHcCCCcceEEEEEEee
Q 002152 623 LIETATAPIFGVDS---SGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKF 699 (959)
Q Consensus 623 lie~~~~~I~~~D~---dg~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~~~~~ 699 (959)
++++++++++++|. +|+|+++|+++++++|++.++++|+++. .+++++........+...+..+.....++.+
T Consensus 2 ~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~e~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~--- 77 (128)
T 3t50_A 2 ASEFTLMPMLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCR-FLQGHGTDPAHVRAIKSAIAAEKPIDIDIIN--- 77 (128)
T ss_dssp CCCCCSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG-GGCCTTSCHHHHHHHHHHHHTTCCEEEEEEE---
T ss_pred ccccCcccEEEecCCCCCCcEEEEcHHHHHHhCcCHHHHcCCCHh-hhcCCccCHHHHHHHHHHHHcCCCceeEEEE---
Confidence 46789999999999 9999999999999999999999999987 7887766666666666666666666666665
Q ss_pred eeccCCcEEEEEEEEEEeecCCCCEEEEEEEeecchhhHHHHHHHHHHHHH
Q 002152 700 ELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGD 750 (959)
Q Consensus 700 ~~~~dG~~~~v~v~~~pi~d~~g~~~gvv~v~~DITerk~~E~~L~~se~~ 750 (959)
.+++|..+|+.++..|+.+.+|.+.|++++++|||++|++|++....+.+
T Consensus 78 -~~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DITe~k~~e~~~~~~~~~ 127 (128)
T 3t50_A 78 -YKKSGEAFWNRLHISPVHNANGRLQHFVSSQLDVTLELVPRGSLEHHHHH 127 (128)
T ss_dssp -ECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHC-----------
T ss_pred -EcCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEcchhhhhhhhhhhcccC
Confidence 67899999999999999999999999999999999999999998877654
No 35
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=99.48 E-value=7.4e-13 Score=144.95 Aligned_cols=226 Identities=10% Similarity=0.047 Sum_probs=154.8
Q ss_pred HHHhcCccEEEEcCC-CceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHHH---------------HcC
Q 002152 623 LIETATAPIFGVDSS-GTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRA---------------LLG 686 (959)
Q Consensus 623 lie~~~~~I~~~D~d-g~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~---------------l~~ 686 (959)
+++++...++++..+ |+|+|+|+.+..++||+.++++|+++. +++||+|.+.+...+... ...
T Consensus 31 lLqaldGF~~vvs~~~G~i~yvS~sv~~~Lg~~~~~l~g~s~~-d~iHp~D~~~f~~qL~~~~lp~~~~~~~~~~~~~~~ 109 (320)
T 4dj2_A 31 TLRNQDTFSVAVSFLTGRIVYISEQAGVLLRCKRDVFRGARFS-ELLAPQDVGVFYGSTTPSRLPTWGTGTSAGSGLKDF 109 (320)
T ss_dssp TTSCSSEEEEEEETTTCBEEEECTHHHHHHTSCSTTTTTSBGG-GGBCHHHHHHHHHHCCTTTCCBTTC-----------
T ss_pred HHhccCCEEEEEECCCceEEEECcHHHHHhCcCHHHHcCCcHH-HhcCHHHHHHHHHhhcccCCCCcccCcccccccccC
Confidence 477888888888875 999999999999999999999999999 999999998777654310 011
Q ss_pred CCcceEEEEEEeeeeccCC--cEEEEEEEE--EEeecCCCC--EEEEEEEeecchhh-HHHHHHHHHHHHHHHHHHHhcC
Q 002152 687 EEDKNVELKLRKFELQKQH--SVVYILVNA--CTSRDYKNN--VKGVCFVGQDITHE-KVLMDKFIRLQGDYEAIIQSVN 759 (959)
Q Consensus 687 ~~~~~~e~~~~~~~~~~dG--~~~~v~v~~--~pi~d~~g~--~~gvv~v~~DITer-k~~E~~L~~se~~l~~i~e~~~ 759 (959)
.....+-++++... .++. +..++.+.+ ..+.+.+|. ....+..+.-+-.. +..+ +.....
T Consensus 110 ~~~rsF~CRmr~~l-~k~~~~~Y~~~~~~g~lk~~~~~~g~~~~~~~li~a~~~~s~~~~~~------------i~~~~~ 176 (320)
T 4dj2_A 110 TQEKSVFCRIRGGP-DRDPGPRYQPFRLTPYVTKIRVSDGAPAQPCCLLIAERIHSGYEAPR------------IPPDKR 176 (320)
T ss_dssp --CCCEEEEECCC--------CCEEEEEEEEEEEECC---CCCEEEEEEEEEECCCSSSSSC------------CCGGGC
T ss_pred CCceeEEEEEEEec-cCCCcccEEEEEEEEEecccccCCCCcccceeeeeeeeccCcccccc------------ccCCCc
Confidence 12344556664321 2222 233443333 223445554 33333333322111 1000 001112
Q ss_pred CCCCCeeeeCCCCcEEeecHHHHHHhCCCchhhcCCCcccccccccccccChhhHHHHHHHHHhhhcC-CCcc-eeeEEE
Q 002152 760 PLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITG-QGTE-NFPFGF 837 (959)
Q Consensus 760 ~~i~~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l~~~~~~-~~~~-~~e~~~ 837 (959)
. -+...+.+|+++++|+++..++||.++|++|+.+. .+.||+|...+...+.+.+.+ +... ..++|+
T Consensus 177 ~---Fitrh~~dG~~~yvd~~~~~lLGY~peELig~s~~--------~~vHPdD~~~~~~~~~~~l~~~g~~~~~~~yR~ 245 (320)
T 4dj2_A 177 I---FTTRHTPSCLFQDVDERAAPLLGYLPQDLLGAPVL--------LFLHPEDRPLMLAIHKKILQLAGQPFDHSPIRF 245 (320)
T ss_dssp E---EEEEECTTCBEEEECTTHHHHHSCCHHHHTTSBGG--------GGBCGGGHHHHHHHHHHHTTSSSCCEECCCEEE
T ss_pred e---EEEEecCCceEEEcCcceeccCCcChHHHcCCcHH--------HhCCHHHHHHHHHHHHHHHhcCCCcccceEEEE
Confidence 2 26678999999999999999999999999999855 378899999999989888874 4444 479999
Q ss_pred EccCCcEEEEEEEEeeeeCC-CCCEEEEEEEEeeccc
Q 002152 838 FNRQGQFVEVALTASRRTDA-EGKVIGCFCFMQILVP 873 (959)
Q Consensus 838 ~~~dG~~~~v~~~~~pi~d~-~G~i~g~v~i~~DITe 873 (959)
+++||.++|+.....++.|. .+++..++|.-.-++.
T Consensus 246 ~~kdG~~vwvet~~~~~~np~s~~~e~II~~h~v~~g 282 (320)
T 4dj2_A 246 CARNGEYVTMDTSWAGFVHPWSRKVAFVLGRHKVRTA 282 (320)
T ss_dssp ECSSSCEEEEECEEEEEECTTTCSEEEEEEEEEESSC
T ss_pred EccCCCEEEEEEEEEEEECCCCCCccEEEEEEEEccC
Confidence 99999999999999998886 6778888888776664
No 36
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=99.47 E-value=5.9e-14 Score=142.05 Aligned_cols=141 Identities=18% Similarity=0.213 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHhcCccEEEEc-CCCceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHHHHcCCCcc-eE
Q 002152 615 SVACEMVRLIETATAPIFGVD-SSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDK-NV 692 (959)
Q Consensus 615 ~~~~~l~~lie~~~~~I~~~D-~dg~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~l~~~~~~-~~ 692 (959)
..+++|+.+++++|++++++| .+|+|+++|+++++++|++ +++|+++. +++++.....+...+..++..+... ..
T Consensus 34 ~~~~~l~~l~~~~~~~i~~~d~~~g~i~~~N~a~~~l~G~~--~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 110 (185)
T 3kx0_X 34 GAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLL--DTVGQPAR-EVYPELEGQQIYEMLDRVYQTGEPQSGS 110 (185)
T ss_dssp CCHHHHHHHHHHCSSEEEEEETTTTEEEEECHHHHHHCCCC--SCTTSBHH-HHCTTSCSSSSHHHHHHHHHHCCCEEEE
T ss_pred hhHHHHHHHHhcCCceEEEEECCCcEEEEEcHHHHHHcCCc--cccCCcHH-HHCCchhhhhHHHHHHHHHHcCCccccc
Confidence 345678999999999999999 9999999999999999999 89999988 8887766555555666766434332 22
Q ss_pred EEEEEeeeecc-C-CcEEEEEEEEEEeecCCCCEEEEEEEeecchhhHHHHHH----HHHHHHHHHHHHHhcCC
Q 002152 693 ELKLRKFELQK-Q-HSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDK----FIRLQGDYEAIIQSVNP 760 (959)
Q Consensus 693 e~~~~~~~~~~-d-G~~~~v~v~~~pi~d~~g~~~gvv~v~~DITerk~~E~~----L~~se~~l~~i~e~~~~ 760 (959)
++.+.. .++ + |..+|+.++..|+++.+|.+.|++++++|||++|++|++ |++++.+++.++++++.
T Consensus 111 ~~~~~~--~~~~~gg~~~~~~~~~~pi~~~~g~~~g~~~~~~DITerk~~e~~~~~ll~~~~~~l~~~~~~~~~ 182 (185)
T 3kx0_X 111 EWRLQT--DYDGSGVEERYFDFVVTPRRRADGSIEGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSATV 182 (185)
T ss_dssp EEEEC----------CCEEEEEEEEEEECTTSCEEEEEEEEEECHHHHTTCC----------------------
T ss_pred ceeEEe--eccCCCCccEEEEEEEEEEECCCCCEEEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 233321 122 2 778999999999999999999999999999999999999 99999999999988753
No 37
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=99.47 E-value=2e-13 Score=125.94 Aligned_cols=110 Identities=10% Similarity=0.088 Sum_probs=96.7
Q ss_pred CCeeeeC-CCCcEEeecHHHHHHhCCCchhhcCCCcccccccccccccChhhHHHHHHHHHhhhcCCCcceeeEEEEccC
Q 002152 763 PPIFASD-ENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQ 841 (959)
Q Consensus 763 ~~I~~~D-~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l~~~~~~~~~~~~e~~~~~~d 841 (959)
+++|.+| .+|+++++|+++++++||+++++.|.. .+..+.||++...+...+.+++.++..+..++++++++
T Consensus 4 ~giw~~d~~~~~~~~~n~~~~~l~G~~~~e~~~~~-------~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~r~~~~d 76 (115)
T 3h9w_A 4 AIPWKINWQTMAFEYIGPQIEALLGWPQGSWKSVE-------DWATRMHPEDQEWVVNFCVKQSECGVDHEADYRALHRD 76 (115)
T ss_dssp CEEEEEETTTTEEEEECTHHHHHHCSCGGGCCBHH-------HHHHSBCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTT
T ss_pred eEEEEEEcCCCcEEEEChhHHHHhCCChHHccCHH-------HHHHhcCHHHHHHHHHHHHHHHhcCCcccEEEEEEcCC
Confidence 3689999 788899999999999999999998821 13357889999999999999998887899999999999
Q ss_pred CcEEEEEEEEeeeeCCCCCEEEEEEEEeecccccHHHH
Q 002152 842 GQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPAL 879 (959)
Q Consensus 842 G~~~~v~~~~~pi~d~~G~i~g~v~i~~DITerk~~El 879 (959)
|+.+|+..++.|++|.+|++++++|+..|||++|++|.
T Consensus 77 G~~~w~~~~~~~~~d~~G~~~~~~G~~~Dit~~k~~~~ 114 (115)
T 3h9w_A 77 GHYVWIRDVVHVVRDDSGEVEALIGFMFDISLEHHHHH 114 (115)
T ss_dssp SCEEEEEEEEEEEECTTSCEEEEEEEEEECGGGGC---
T ss_pred CCEEEEEEEEEEEECCCCCEEEEEEEEeccCccccccc
Confidence 99999999999999999999999999999999998774
No 38
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=99.47 E-value=6.9e-14 Score=129.34 Aligned_cols=108 Identities=11% Similarity=0.093 Sum_probs=98.2
Q ss_pred cCccEEEEcCCCceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHHHHcCCCcceEEEEEEeeeeccCCc
Q 002152 627 ATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHS 706 (959)
Q Consensus 627 ~~~~I~~~D~dg~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~~~~~~~~~dG~ 706 (959)
+++.++.+|.+|+++++|+++++++||++++++|+++. +++||++.+.+...+..++.++.....++++ ++++|.
T Consensus 8 ~~~~i~~~d~~g~i~~~n~~~~~~~Gy~~~el~g~~~~-~~~~p~d~~~~~~~~~~~~~~~~~~~~e~r~----~~~dG~ 82 (117)
T 3f1p_A 8 SKTFLSEHSMDMKFTYCDDRITELIGYHPEELLGRSAY-EFYHALDSENMTKSHQNLCTKGQVVSGQYRM----LAKHGG 82 (117)
T ss_dssp GGEEEEEECTTCBEEEECTHHHHHHCCCHHHHTTSBGG-GGBCGGGHHHHHHHHHHHHHHSEEECCCEEE----ECTTSS
T ss_pred CccEEEEECCCceEEEECcChhhhhCCCHHHHcCCchh-heECHHHHHHHHHHHHHHHhCCCeeeeEEEE----EecCCC
Confidence 46788999999999999999999999999999999998 9999999998888888888776666667777 789999
Q ss_pred EEEEEEEEEEeecC-CCCEEEEEEEeecchhhHH
Q 002152 707 VVYILVNACTSRDY-KNNVKGVCFVGQDITHEKV 739 (959)
Q Consensus 707 ~~~v~v~~~pi~d~-~g~~~gvv~v~~DITerk~ 739 (959)
.+|+.+++.|++|. +|.+.+++++.+|||++|+
T Consensus 83 ~~w~~~~~~~~~d~~~g~~~~iv~~~~DITer~~ 116 (117)
T 3f1p_A 83 YVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEK 116 (117)
T ss_dssp EEEEEEEEEEEEETTTTEEEEEEEEEEECSCCBC
T ss_pred EEEEEEeeEEEECCCCCCceEEEEEeeecccccc
Confidence 99999999999998 8899999999999999875
No 39
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=99.47 E-value=4e-13 Score=127.02 Aligned_cols=125 Identities=15% Similarity=0.101 Sum_probs=97.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeeCCCCcEEeecHHHHHHhCCCchhhcCCCcccccccccccccChhhH
Q 002152 735 THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDML 814 (959)
Q Consensus 735 Terk~~E~~L~~se~~l~~i~e~~~~~i~~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~e~~ 814 (959)
|+++++|++|++++.+|+.++++++. +|+++|.+|+|++||+++++++||+.+|++|+++.. +.++++.
T Consensus 2 ~~~~~~e~~l~~~~~~~~~l~~~~~d---~i~~~d~~g~i~~~N~a~~~l~Gy~~~eliG~~~~~--------l~~~~~~ 70 (130)
T 1d06_A 2 SHMLETEDVVRARDAHLRSILDTVPD---ATVVSATDGTIVSFNAAAVRQFGYAEEEVIGQNLRI--------LMPEPYR 70 (130)
T ss_dssp CHHHHHHHHHHHHTSCHHHHHTTCSS---EEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGG--------GSCTTHH
T ss_pred chHHHHHHHHHHHHHHHHHHHhhCcC---eEEEECCCCeEEEEcHHHHHHHCCCHHHHcCCcHHH--------HCCchhH
Confidence 78999999999999999999999875 599999999999999999999999999999997543 2334433
Q ss_pred HHHHHHHHhhhcCCC----cceeeEEEEccCCcEEEEEEEEeeeeCCCCCEEEEEEEEeecc
Q 002152 815 TKFMILLYQGITGQG----TENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILV 872 (959)
Q Consensus 815 ~~~~~~l~~~~~~~~----~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~i~g~v~i~~DIT 872 (959)
......+......+. ....++..+++||+.+|+.++..|+.+.+ ..+++++++|||
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~~~~~~~~~~~~~~--~~~~~~~~~DIT 130 (130)
T 1d06_A 71 HEHDGYLQRYMATGEKRIIGIDRVVSGQRKDGSTFPMKLAVGEMRSGG--ERFFTGFIRDLT 130 (130)
T ss_dssp HHHHHHHHHHHHHCCCSSTTSCEEEEEECTTSCEEEEEEEEEEEEETT--EEEEEEEEEECC
T ss_pred HHHHHHHHHHHhcCCccccCCeeEEEEEeCCCCEEEEEEEEEEEEECC--eEEEEEEEEECc
Confidence 333333333332111 13456778999999999999999997643 345889999998
No 40
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=99.44 E-value=1.3e-12 Score=122.18 Aligned_cols=124 Identities=15% Similarity=0.067 Sum_probs=94.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeeCCCCcEEeecHHHHHHhCCCchhhc--CCCcccccccccccccC
Q 002152 733 DITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI--GKMLPREIFGNFCRMKG 810 (959)
Q Consensus 733 DITerk~~E~~L~~se~~l~~i~e~~~~~i~~I~~~D~~g~i~~~N~a~~~l~G~~~eevi--Gk~~~~~i~~~~~~l~~ 810 (959)
|+|++|+++++|++++++|+.++++++.+ |+++|.+|+|+++|+++++++||+.++++ |+.... +.+
T Consensus 1 ~~t~r~~~e~~L~~~~~~~~~l~e~~~~~---i~~~d~~g~i~~~N~a~~~~~G~~~~el~g~g~~~~~--------~~~ 69 (126)
T 3bwl_A 1 SNAERKRREKRLEETSSRLEALFENSPDM---IDVLDADGTICEVNQRFCAELGYDESEVLGRSIWEFD--------LMF 69 (126)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHCSSE---EEEECTTCBEEEECHHHHHHHTCCGGGTTTSBGGGTB--------TTC
T ss_pred CchhHHHHHHHHHHHHHHHHHHHhhCCcE---EEEEcCCCCEEEEcHHHHHHhCCCHHHHhhCCCchhh--------ccC
Confidence 68999999999999999999999999854 99999999999999999999999999995 454332 222
Q ss_pred hhhHHHHHHHHHhhhcCCCcceeeEEEEccCCcEEEEEEEEeeeeCCCCCEEEEEEEEeecc
Q 002152 811 QDMLTKFMILLYQGITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILV 872 (959)
Q Consensus 811 ~e~~~~~~~~l~~~~~~~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~i~g~v~i~~DIT 872 (959)
+...+...+.....+ ....++.++.++||+.+|+.++..++.+ +|.. +++++++|||
T Consensus 70 --~~~~~~~~~~~~~~~-~~~~~e~~~~~~dG~~~~~~~~~~~~~~-~~~~-~~~~~~~DIT 126 (126)
T 3bwl_A 70 --DAEDVQTQLSGFSVD-ERRKFEGLYERRDGSTMSVEVHLLRFNL-EGED-RFLAISRDIT 126 (126)
T ss_dssp --CHHHHHHHHHTCCTT-CEEEEEEEEECTTSCEEEEEEEEEEEEE-TTEE-EEEEEEEEC-
T ss_pred --CHHHHHHHHHHHhcC-CCcceEEEEEeCCCCEEEEEEEeEEEec-CCcE-EEEEEEEeCC
Confidence 222333333333333 3456677788999999999988888743 4443 5788899998
No 41
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=99.44 E-value=2.6e-13 Score=125.11 Aligned_cols=112 Identities=17% Similarity=0.138 Sum_probs=97.2
Q ss_pred cCccEEEEc-CCCceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHHHHcCCCcceEEEEEEeeeeccCC
Q 002152 627 ATAPIFGVD-SSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQH 705 (959)
Q Consensus 627 ~~~~I~~~D-~dg~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~~~~~~~~~dG 705 (959)
+++++|.+| .+|+++++|+++++++||+++++.|...+..++||++.+.+...+..++.++.....++++ .+++|
T Consensus 2 a~~giw~~d~~~~~~~~~n~~~~~l~G~~~~e~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~r~----~~~dG 77 (115)
T 3h9w_A 2 TKAIPWKINWQTMAFEYIGPQIEALLGWPQGSWKSVEDWATRMHPEDQEWVVNFCVKQSECGVDHEADYRA----LHRDG 77 (115)
T ss_dssp -CCEEEEEETTTTEEEEECTHHHHHHCSCGGGCCBHHHHHHSBCHHHHHHHHHHHHHHHHTTCCEEEEEEE----ECTTS
T ss_pred cceEEEEEEcCCCcEEEEChhHHHHhCCChHHccCHHHHHHhcCHHHHHHHHHHHHHHHhcCCcccEEEEE----EcCCC
Confidence 568999999 6888999999999999999999998433227899999999999998888887777778887 78999
Q ss_pred cEEEEEEEEEEeecCCCCEEEEEEEeecchhhHHHHH
Q 002152 706 SVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMD 742 (959)
Q Consensus 706 ~~~~v~v~~~pi~d~~g~~~gvv~v~~DITerk~~E~ 742 (959)
+.+|+...+.|++|.+|++++++++..|||++|.+|+
T Consensus 78 ~~~w~~~~~~~~~d~~G~~~~~~G~~~Dit~~k~~~~ 114 (115)
T 3h9w_A 78 HYVWIRDVVHVVRDDSGEVEALIGFMFDISLEHHHHH 114 (115)
T ss_dssp CEEEEEEEEEEEECTTSCEEEEEEEEEECGGGGC---
T ss_pred CEEEEEEEEEEEECCCCCEEEEEEEEeccCccccccc
Confidence 9999999999999999999999999999999998875
No 42
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=99.44 E-value=5.2e-13 Score=130.64 Aligned_cols=130 Identities=12% Similarity=0.093 Sum_probs=109.9
Q ss_pred HHHHHHHHhcCccEEEEcCCC---ceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHHHHcCCCcceEEE
Q 002152 618 CEMVRLIETATAPIFGVDSSG---TINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVEL 694 (959)
Q Consensus 618 ~~l~~lie~~~~~I~~~D~dg---~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~ 694 (959)
+.++.+++.++++++++|.+| +|+++|+++++++|++.++++|+.+. .+++++........+...+..+.....++
T Consensus 25 ~~~~~i~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (162)
T 3sw1_A 25 QLLQSMVDASNDGIVVAEKEGDDTILIYVNAAFEYLTGYSRDEILYQDCR-FLQGDDRDQLGRARIRKAMAEGRPCREVL 103 (162)
T ss_dssp HHHHHHHHTCSSEEEEEEEETTEEEEEEECHHHHHHHTCCHHHHTTSBGG-GGTTTCCCCHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHhhccCcEEEEeCCCCccEEEEECHHHHHHHCCCHHHHcCCCcc-eecCCCcCHHHHHHHHHHHhcCCCCcceE
Confidence 567899999999999999999 99999999999999999999999987 78777665555555666665555555566
Q ss_pred EEEeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEeecchhhHHHHHHHHHHHHHHH
Q 002152 695 KLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYE 752 (959)
Q Consensus 695 ~~~~~~~~~dG~~~~v~v~~~pi~d~~g~~~gvv~v~~DITerk~~E~~L~~se~~l~ 752 (959)
.+ .+++|..+|+.++..|+.+.+|.+.+++++++|||++|+++++++++++++.
T Consensus 104 ~~----~~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DiTe~k~~e~~l~~~~~~l~ 157 (162)
T 3sw1_A 104 RN----YRKDGSAFWNELSITPVKSDFDQRTYFIGIQKDVSRQVELERELAELRARPK 157 (162)
T ss_dssp EE----ECTTCCEEEEEEEEEEEECSSSSCEEEEEEEEECHHHHHHHHHHHHHTC---
T ss_pred EE----ECCCCCEEEEEEEEEEeecCCCCEEEEEEEEEeCcHHHHHHHHHHHHHHHHH
Confidence 55 6789999999999999999999999999999999999999999988776654
No 43
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=99.44 E-value=2e-12 Score=140.92 Aligned_cols=227 Identities=8% Similarity=0.035 Sum_probs=143.6
Q ss_pred HHHHhcCccEEEEcCC-CceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHHH--------------Hc-
Q 002152 622 RLIETATAPIFGVDSS-GTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRA--------------LL- 685 (959)
Q Consensus 622 ~lie~~~~~I~~~D~d-g~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~--------------l~- 685 (959)
.+++++...+++++.+ |+|+|+++.+..++||+++|++|+++. +++||+|.+.+...+... ..
T Consensus 19 lll~a~dgF~~vvs~~~G~i~yvS~s~~~~Lg~~~~el~g~s~~-d~iHp~D~~~~~~~L~~~~lp~~~~~~~~~~~~~~ 97 (309)
T 3gdi_A 19 YIVKNADMFAVAVSLVSGKILYISNQVASIFHCKKDAFSDAKFV-EFLAPHDVSVFHSYTTPYKLPPWSVCSGLDSFTQE 97 (309)
T ss_dssp ----CTTEEEEEECTTTCBEEEECTTTTTTC-------CCSBGG-GGBCTTTHHHHHHHTCTTSSCBCC-----------
T ss_pred HHHHhcCCEEEEEECCCceEEEECCHHHHHcCCCHHHHcCCchh-hccCHhHHHHHHHhccccCCCCcccccCccccccc
Confidence 4567888888999986 999999999999999999999999999 999999998877665210 00
Q ss_pred CCCcceEEEEEEeeee-ccCCcEEEEEEEEEE--eecCCCC--EEEEEEEeecchhh-HHHHHHHHHHHHHHHHHHHhcC
Q 002152 686 GEEDKNVELKLRKFEL-QKQHSVVYILVNACT--SRDYKNN--VKGVCFVGQDITHE-KVLMDKFIRLQGDYEAIIQSVN 759 (959)
Q Consensus 686 ~~~~~~~e~~~~~~~~-~~dG~~~~v~v~~~p--i~d~~g~--~~gvv~v~~DITer-k~~E~~L~~se~~l~~i~e~~~ 759 (959)
......+.++++..+. .+..+..++.+.+.. +.+.+|. ....+.++.-+..- +... ...+. +
T Consensus 98 ~~~~rsF~CRmr~~~~~~~~~~Y~~~~~~g~lk~~~~~~g~~~~~~lv~~a~~~~s~~~~p~-----------~~~~~-~ 165 (309)
T 3gdi_A 98 CMEEKSFFCRVSVGKHHENEIRYQPFRMTPYLVKVQEQQGAESQLCCLLLAERVHSGYEAPR-----------IPPEK-R 165 (309)
T ss_dssp ---CCCEEEEECCCC----CCCCEEEEEEEEEEECC--------EEEEEEEEECCCTTSSSC-----------CCGGG-C
T ss_pred cCCceeEEEEEEccccCCCccceEEEEEEeeeccccCCCCCcCccEEEEEEEecCCCccCCC-----------cCCCC-c
Confidence 0113455666643211 111233344444332 3344444 22333333222110 0000 00111 1
Q ss_pred CCCCCeeeeCCCCcEEeecHHHHHHhCCCchhhcCCCcccccccccccccChhhHHHHHHHHHhhhcCC-Ccce-eeEEE
Q 002152 760 PLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQ-GTEN-FPFGF 837 (959)
Q Consensus 760 ~~i~~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l~~~~~~~-~~~~-~e~~~ 837 (959)
. -+...+.+|+++++|+++..++||.++|++|+.+. .+.||+|...+...+.+.+.++ .... .++|+
T Consensus 166 ~---Fitrh~~dG~~~yvd~~~~~lLGY~peELig~s~~--------~~iHpdD~~~~~~~~~~~l~~~g~~~~~~~yR~ 234 (309)
T 3gdi_A 166 I---FTTTHTPNCLFQAVDERAVPLLGYLPQDLIETPVL--------VQLHPSDRPLMLAIHKKILQAGGQPFDYSPIRF 234 (309)
T ss_dssp E---EEEEECTTCBEEEECTTHHHHHSCCHHHHTTSBHH--------HHBCTTSHHHHHHHHHHHHHTTTCCEEEEEEEE
T ss_pred e---EEEEecCCCeEEEECcccccccCcCHHHHcCCCHH--------HhCCHHHHHHHHHHHHHHHhcCCceeeceEEEE
Confidence 1 26678999999999999999999999999999754 3778999998888888888744 3444 58999
Q ss_pred EccCCcEEEEEEEEeeeeCC-CCCEEEEEEEEeecc
Q 002152 838 FNRQGQFVEVALTASRRTDA-EGKVIGCFCFMQILV 872 (959)
Q Consensus 838 ~~~dG~~~~v~~~~~pi~d~-~G~i~g~v~i~~DIT 872 (959)
+++||.++|+.....++.|. .+++..++|.-+.++
T Consensus 235 ~~kdG~~vwvet~~~~~~np~s~~~e~ii~~h~v~~ 270 (309)
T 3gdi_A 235 RTRNGEYITLDTSWSSFINPWSRKISFIIGRHKVRV 270 (309)
T ss_dssp ECTTSCEEEEEEEEEEEECTTTCCEEEEEEEEEEEE
T ss_pred EccCCCEEEEEEEEEEEECCCCCcccEEEEEEEEcc
Confidence 99999999999999998886 577777888766655
No 44
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=99.42 E-value=7.2e-13 Score=125.24 Aligned_cols=123 Identities=15% Similarity=0.152 Sum_probs=98.5
Q ss_pred cccchHHHHHHHHHHHHHHHhcCccEEEEcCCCceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHHHHc
Q 002152 606 KMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALL 685 (959)
Q Consensus 606 l~~~~~eL~~~~~~l~~lie~~~~~I~~~D~dg~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~l~ 685 (959)
+++++++|++.+.+++.++++++++|+++|.+|+|++||+++++++||+.+|++|+++. .+++++........+.....
T Consensus 4 ~~~~e~~l~~~~~~~~~l~~~~~d~i~~~d~~g~i~~~N~a~~~l~Gy~~~eliG~~~~-~l~~~~~~~~~~~~~~~~~~ 82 (130)
T 1d06_A 4 MLETEDVVRARDAHLRSILDTVPDATVVSATDGTIVSFNAAAVRQFGYAEEEVIGQNLR-ILMPEPYRHEHDGYLQRYMA 82 (130)
T ss_dssp HHHHHHHHHHHTSCHHHHHTTCSSEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGG-GGSCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhCcCeEEEECCCCeEEEEcHHHHHHHCCCHHHHcCCcHH-HHCCchhHHHHHHHHHHHHh
Confidence 45668888888899999999999999999999999999999999999999999999987 78777666554445544443
Q ss_pred CCCc----ceEEEEEEeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEeecch
Q 002152 686 GEED----KNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735 (959)
Q Consensus 686 ~~~~----~~~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~~~gvv~v~~DIT 735 (959)
.+.. ...++.. .++||+.+|+.++..|+.+. ...+++++++|||
T Consensus 83 ~~~~~~~~~~~e~~~----~~kdG~~~~~~~~~~~~~~~--~~~~~~~~~~DIT 130 (130)
T 1d06_A 83 TGEKRIIGIDRVVSG----QRKDGSTFPMKLAVGEMRSG--GERFFTGFIRDLT 130 (130)
T ss_dssp HCCCSSTTSCEEEEE----ECTTSCEEEEEEEEEEEEET--TEEEEEEEEEECC
T ss_pred cCCccccCCeeEEEE----EeCCCCEEEEEEEEEEEEEC--CeEEEEEEEEECc
Confidence 2221 2334544 68999999999999999764 3345788999998
No 45
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=99.41 E-value=3.9e-13 Score=131.30 Aligned_cols=130 Identities=14% Similarity=0.155 Sum_probs=100.4
Q ss_pred hHHHHHHHHHHHHHHHhcCccEEEEcCCCceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHHHHcCCCc
Q 002152 610 VDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEED 689 (959)
Q Consensus 610 ~~eL~~~~~~l~~lie~~~~~I~~~D~dg~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~l~~~~~ 689 (959)
.+++++.+..+..+++++++||+++|.+|+|++||+++++++|++.++++|+++. +++++ ..+.+...+..++..+..
T Consensus 14 ~~~~~~~~~~l~~il~~~~~gi~v~D~~g~I~~~N~a~~~~~G~~~~eviG~~~~-~~~p~-~~~~~~~~l~~vl~~G~~ 91 (152)
T 3mxq_A 14 SNAMAKSRLLLSELLDQLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNIL-ELFPE-SADYLKRKIDTALVIESS 91 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEETTSBEEEECHHHHHTSSSCHHHHTTSBHH-HHSGG-GHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEcCCCEEEEECHHHHHHHCcCHHHHCCCCHH-HhcCC-hHHHHHHHHHHHHhcCCc
Confidence 3467777788899999999999999999999999999999999999999999998 88877 777778888888875543
Q ss_pred ceEEEE-------EEee-eeccCCcEEEEEEEEEEeecCCCCEEEEEEEeecchhhHHHH
Q 002152 690 KNVELK-------LRKF-ELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLM 741 (959)
Q Consensus 690 ~~~e~~-------~~~~-~~~~dG~~~~v~v~~~pi~d~~g~~~gvv~v~~DITerk~~E 741 (959)
.....+ +... ...++|...|+.++..|++|.+|++.|++.+++|||+++++.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~Pl~d~~G~v~gv~~ii~DVTe~~~a~ 151 (152)
T 3mxq_A 92 SFSSWEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQASQQ 151 (152)
T ss_dssp EEEECCSSSCSSCC----------CCEEEEEEEEEEECTTSCEEEEEEEEEEEECC----
T ss_pred eeeecccccccccccccCCCCCCCcEEEEEEEEEEEECCCCCEEEEEEEEEECCHHHhcc
Confidence 211110 1000 023456788999999999999999999999999999998754
No 46
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=99.41 E-value=8.5e-13 Score=121.16 Aligned_cols=117 Identities=8% Similarity=0.010 Sum_probs=105.0
Q ss_pred HHHHHHHHHHhcCCCCCCeeeeCCCCcEEeecHHHHHHhCCCchhhcCCCcccccccccccccChhhHHHHHHHHHhhhc
Q 002152 747 LQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGIT 826 (959)
Q Consensus 747 se~~l~~i~e~~~~~i~~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l~~~~~ 826 (959)
++++|+.++++++.+ +|.+|.+|+++++|+++++++||+.+++.++... +..+.||++...+...+.+.+.
T Consensus 2 s~~~~~~l~~~~~~~---i~~~d~~~~~~~~n~~~~~~~G~~~~~~~~~~~~------~~~~i~p~d~~~~~~~~~~~~~ 72 (118)
T 3icy_A 2 NAEELQALVDNIPAA---IYHLDVSGQATIRFRPPAFLKTLVSEHAGTTRLN------TLSMIHHDDRHMLSNAYSKLRE 72 (118)
T ss_dssp HHHHHHHHHTTCCCC---CEEECTTSCEEECCCCCGGGGGGEEEETTEEEEG------GGGGBCGGGHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhcCCce---EEEEEcCCCceEEechhHhhcCCCHHHccCChhH------HHHHcCHHHHHHHHHHHHHHHh
Confidence 467899999999865 9999999999999999999999999998776421 3357789999999999988888
Q ss_pred CCCcceeeEEEEccCCcEEEEEEEEeeeeCCCCCEEEEEEEEeecc
Q 002152 827 GQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILV 872 (959)
Q Consensus 827 ~~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~i~g~v~i~~DIT 872 (959)
++..+..++++.+++|+.+|+...+.|+.+.+|.+.+++|+++|||
T Consensus 73 ~~~~~~~e~r~~~~~g~~~w~~~~~~~~~~~~g~~~~~~g~~~DIT 118 (118)
T 3icy_A 73 AKHSLTLVYRIVTPEGKLHWIEDHMRSSFSDDGLFSGIDGILCEVT 118 (118)
T ss_dssp SCCEEEEEEEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred cCCCceEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEecC
Confidence 8888999999999999999999999999999999999999999998
No 47
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=99.40 E-value=1.4e-12 Score=119.47 Aligned_cols=103 Identities=14% Similarity=0.107 Sum_probs=84.2
Q ss_pred CCeeeeC---CCCcEEeecHHHHHHhCCCchhhcCCCcccccccccccccChhhHHHHHHHHHhhhcCCCcceeeEEEEc
Q 002152 763 PPIFASD---ENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFN 839 (959)
Q Consensus 763 ~~I~~~D---~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l~~~~~~~~~~~~e~~~~~ 839 (959)
++|+++| .+|+|+++|++|++++||+.+|++|++... +.+++........+.+.+..+..+..++..++
T Consensus 4 ~~i~i~d~~~~~g~i~~~N~a~~~l~Gy~~~e~~G~~~~~--------l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 75 (109)
T 1n9l_A 4 HTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRF--------LQGEGTDPKEVQKIRDAIKKGEACSVRLLNYR 75 (109)
T ss_dssp CEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGG--------GCCTTCCHHHHHHHHHHHHHTCCEEEEEEEEC
T ss_pred cEEEEEcCCCCCCeEEEEchHHHHHHCcCHHHHcCCCchh--------cCCCCCCHHHHHHHHHHHHcCCcEEEEEEEEc
Confidence 4688899 479999999999999999999999997432 22233322333445556665667889999999
Q ss_pred cCCcEEEEEEEEeeeeCCCCCEEEEEEEEeeccc
Q 002152 840 RQGQFVEVALTASRRTDAEGKVIGCFCFMQILVP 873 (959)
Q Consensus 840 ~dG~~~~v~~~~~pi~d~~G~i~g~v~i~~DITe 873 (959)
+||+.+|+.+++.|++|++|.+.+++++.+|||+
T Consensus 76 kdG~~~~~~~~~~pi~d~~G~~~~~v~~~~DITe 109 (109)
T 1n9l_A 76 KDGTPFWNLLTVTPIKTPDGRVSKFVGVQVDVTS 109 (109)
T ss_dssp TTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCC
T ss_pred CCCCEEEEEEEEEEEECCCCCEEEEEEEEEeCCC
Confidence 9999999999999999999999999999999995
No 48
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=99.40 E-value=1.1e-12 Score=122.62 Aligned_cols=116 Identities=16% Similarity=0.154 Sum_probs=93.3
Q ss_pred HHhcCCCCCCeeeeCC---CCcEEeecHHHHHHhCCCchhhcCCCcccccccccccccChhhHHHHHHHHHhhhcCCCcc
Q 002152 755 IQSVNPLIPPIFASDE---NACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQGTE 831 (959)
Q Consensus 755 ~e~~~~~i~~I~~~D~---~g~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l~~~~~~~~~~ 831 (959)
+++++ ++++++|. +|+++++|+++++++||+.++++|+.+.. +.++++...+...+...+..+..+
T Consensus 3 ~~~~~---~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~e~~g~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 71 (128)
T 3t50_A 3 SEFTL---MPMLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRF--------LQGHGTDPAHVRAIKSAIAAEKPI 71 (128)
T ss_dssp CCCCS---SCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGG--------GCCTTSCHHHHHHHHHHHHTTCCE
T ss_pred cccCc---ccEEEecCCCCCCcEEEEcHHHHHHhCcCHHHHcCCCHhh--------hcCCccCHHHHHHHHHHHHcCCCc
Confidence 44554 45999999 99999999999999999999999998542 233444444555666667777778
Q ss_pred eeeEEEEccCCcEEEEEEEEeeeeCCCCCEEEEEEEEeecccccHHHHHH
Q 002152 832 NFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEA 881 (959)
Q Consensus 832 ~~e~~~~~~dG~~~~v~~~~~pi~d~~G~i~g~v~i~~DITerk~~Elel 881 (959)
..++++.+++|..+|+.+++.|+.+.+|.+.+++++++|||++|+++.+.
T Consensus 72 ~~e~~~~~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DITe~k~~e~~~ 121 (128)
T 3t50_A 72 DIDIINYKKSGEAFWNRLHISPVHNANGRLQHFVSSQLDVTLELVPRGSL 121 (128)
T ss_dssp EEEEEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHC-----
T ss_pred eeEEEEEcCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEcchhhhhhhhh
Confidence 88999999999999999999999999999999999999999999888653
No 49
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=99.40 E-value=1.7e-12 Score=118.00 Aligned_cols=112 Identities=19% Similarity=0.148 Sum_probs=95.4
Q ss_pred HHHHHHHHhcCccEEEEcCCCceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHHHHcCCCcceEEEEEE
Q 002152 618 CEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLR 697 (959)
Q Consensus 618 ~~l~~lie~~~~~I~~~D~dg~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~~~ 697 (959)
++++.++++++++++++|.+|+++++|+++++++|++.++++|+++. +++ ++....+...+..+..++.....+..+
T Consensus 3 ~~~~~~~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~- 79 (114)
T 3luq_A 3 ERLRLFTEHAPAALAMFDREMRYLAVSRRWREDYGLGDGDILGMSHY-DIF-PEIGEEWKSVHRRGLAGEVIRVEEDCF- 79 (114)
T ss_dssp HHHHHHHHTCSSEEEEEETTCBEEEECHHHHHHTTCCSSCCTTCBHH-HHC-TTCCHHHHHHHHHHHTTCCEEEEEEEE-
T ss_pred HHHHHHHhcCCceEEEEcCCcEEEEECHHHHHHHCCCHHHHcCCcHH-HHC-CccHHHHHHHHHHHhcCCcceeeeeEE-
Confidence 56889999999999999999999999999999999999999999988 776 555566777778888766554433344
Q ss_pred eeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEeecch
Q 002152 698 KFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735 (959)
Q Consensus 698 ~~~~~~dG~~~~v~v~~~pi~d~~g~~~gvv~v~~DIT 735 (959)
.+++|..+|+.++..|+++.+|.+.|++++++|||
T Consensus 80 ---~~~~g~~~~~~~~~~p~~~~~g~~~~~~~~~~DIT 114 (114)
T 3luq_A 80 ---VRADGRTQWLRWEVRPWYEGEGRVGGVVIFTEDIT 114 (114)
T ss_dssp ---EC--CCEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred ---EcCCCcEEEEEEEEEEeECCCCCEEEEEEEEeeCC
Confidence 57889999999999999999999999999999998
No 50
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=99.39 E-value=1.5e-12 Score=123.06 Aligned_cols=134 Identities=16% Similarity=0.058 Sum_probs=114.1
Q ss_pred HHHHHHhcCccEEEEcC---CCceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHHHHcCCCcceEEEEE
Q 002152 620 MVRLIETATAPIFGVDS---SGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKL 696 (959)
Q Consensus 620 l~~lie~~~~~I~~~D~---dg~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~~ 696 (959)
+..++++++++++++|. +|+++++|+++++++|++.++++|+++. .+++++........+...+..+.....++.+
T Consensus 4 l~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (146)
T 2v0u_A 4 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCR-FLQGPETDRATVRKIRDAIDNQTEVTVQLIN 82 (146)
T ss_dssp CCCTGGGSSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG-GGCCTTSCHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred HHHHHhcCCCcEEEEcCCCCCceEEEEcHHHHHHHCcCHHHHcCCCHH-HhcCCcCChHHHHHHHHHHhcCCCcceEEEE
Confidence 34578999999999999 9999999999999999999999999987 7878777666666666666666665666665
Q ss_pred EeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEeecchhhHHHHHHHHHHHHHHHHHHHhcC
Q 002152 697 RKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVN 759 (959)
Q Consensus 697 ~~~~~~~dG~~~~v~v~~~pi~d~~g~~~gvv~v~~DITerk~~E~~L~~se~~l~~i~e~~~ 759 (959)
.+++|..+|+.++..|+.+.+|.+.+++++++|||++|+ ++++.+.+.+++.++++++
T Consensus 83 ----~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~-~~~~~~~~~~~~~~~~~~~ 140 (146)
T 2v0u_A 83 ----YTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVR-DAAEREGVMLIKKTAENID 140 (146)
T ss_dssp ----ECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEEESSCCC-HHHHHHHHHHHHHHHHHHH
T ss_pred ----EecCCcEEEEEEEEEEeECCCCCEEEEEEEEeechHHHH-HHHHHHHHHHHHHHHhccH
Confidence 678899999999999999999999999999999999999 6777778888888887754
No 51
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=99.39 E-value=1.7e-12 Score=120.52 Aligned_cols=114 Identities=12% Similarity=0.121 Sum_probs=80.0
Q ss_pred hcCccEEEEcCCCceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHHHHcCCCc----ceEEEEEEeeee
Q 002152 626 TATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEED----KNVELKLRKFEL 701 (959)
Q Consensus 626 ~~~~~I~~~D~dg~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~l~~~~~----~~~e~~~~~~~~ 701 (959)
+++++|+++|.+|+|++||++++++|||+.++++|+++. .+++++........+......+.. ...++.. .
T Consensus 1 ~~~d~i~~~d~~g~i~~~N~a~~~l~G~~~~el~G~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 75 (119)
T 2vv6_A 1 TIPDAMIVIDGHGIIQLFSTAAERLFGWSELEAIGQNVN-ILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVTG----K 75 (119)
T ss_dssp -CCCEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGG-GGSCTTHHHHHHHHHHHHHHHCCCSSTTTCEEEEE----E
T ss_pred CCcceEEEECCCCeEEEEhHHHHHHhCCCHHHHcCCCHH-HhCCchHHHHHHHHHHHHhcCCCcccCCCceEEEE----E
Confidence 368999999999999999999999999999999999987 777776655544444444332221 2344454 6
Q ss_pred ccCCcEEEEEEEEEEeecCCCCEEEEEEEeecchhhHHHHHHHHH
Q 002152 702 QKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIR 746 (959)
Q Consensus 702 ~~dG~~~~v~v~~~pi~d~~g~~~gvv~v~~DITerk~~E~~L~~ 746 (959)
++||+.+|+.++..|+.+. ...+++++++|||++|++|++|+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~--~~~~~~~~~~DITerk~~e~~l~~ 118 (119)
T 2vv6_A 76 RRDGTTFPMHLSIGEMQSG--GEPYFTGFVRDLTEHQQTQARLQE 118 (119)
T ss_dssp CTTSCEEEEEEEEEEEEET--TEEEEEEEEEECC-----------
T ss_pred eCCCCEEEEEEEEEEEEEC--CeEEEEEEEEEcHHHHHHHHHHHh
Confidence 8999999999999999864 334678999999999999988753
No 52
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=99.39 E-value=2.1e-12 Score=118.12 Aligned_cols=119 Identities=17% Similarity=0.214 Sum_probs=101.9
Q ss_pred HHHHHHHHHHhcCccEEEEcCCCceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHHHHcCCCcceEEEE
Q 002152 616 VACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELK 695 (959)
Q Consensus 616 ~~~~l~~lie~~~~~I~~~D~dg~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~ 695 (959)
..++++.++++++++++++|.+|+++++|+++++++|++.++++|+++. .+.+++........+...+.++.....++.
T Consensus 5 ~~~~~~~~~~~~~~~i~~~d~~~~i~~~N~~~~~~~g~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (124)
T 3lyx_A 5 ILKQRAKAFDYVFDAIVVTDLQGFIIDWNKGSETLYGYSKEQAIGQPVN-MLHVPGDTEHITSEVISAVENQGKWTGEIR 83 (124)
T ss_dssp HHHHHHHGGGTCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBGG-GGSCTTTHHHHHHHHHHHHHHTSCEEEEEE
T ss_pred HHHHHHHHHhhcCceEEEECCCCcEeehhhHHHHHhCCCHHHHcCCCHH-HhcCcchhhHHHHHHHHHHHcCCcccceEE
Confidence 3467889999999999999999999999999999999999999999987 777777766666666666666666666666
Q ss_pred EEeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEeecchhhHH
Q 002152 696 LRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKV 739 (959)
Q Consensus 696 ~~~~~~~~dG~~~~v~v~~~pi~d~~g~~~gvv~v~~DITerk~ 739 (959)
+ ..++|..+|+.++..|+.+.+|.+.|++++++|||++|+
T Consensus 84 ~----~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~ 123 (124)
T 3lyx_A 84 M----LHKDGHIGWIESMCVPIYGENYQMVGALGINRDITKRKK 123 (124)
T ss_dssp E----ECTTSCEEEEEEEEEEEECSTTCEEEEEEEEEECSCC--
T ss_pred E----EccCCCEEEEEEEEEEEECCCCCEEEEEEEEecchhhhc
Confidence 6 678999999999999999999999999999999999985
No 53
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=99.38 E-value=2.6e-12 Score=116.83 Aligned_cols=111 Identities=19% Similarity=0.102 Sum_probs=94.7
Q ss_pred HHHhcCccEEEEcC---CCceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHHHHcCCCcceEEEEEEee
Q 002152 623 LIETATAPIFGVDS---SGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKF 699 (959)
Q Consensus 623 lie~~~~~I~~~D~---dg~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~~~~~ 699 (959)
.+++++++++++|. +|+|+++|+++++++|++.++++|+++. .+.+++........+...+..+.....++.+
T Consensus 2 ~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 77 (115)
T 4eet_B 2 SPEFIEKNFVITDPRLPDNPIIFASDGFLELTEYSREEILGRNAR-FLQGPETDQATVQKIRDAIRDQRETTVQLIN--- 77 (115)
T ss_dssp ---CCCCSEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG-GGCCTTSCHHHHHHHHHHHHTTCCEEEEEEE---
T ss_pred ccccCCCcEEEEcCCCCCCcEEEEcHHHHHHHCcCHHHHhCCCHH-HhcCCCCChHHHHHHHHHHHcCCCcceEEEE---
Confidence 47899999999999 9999999999999999999999999987 7887776666666666666666666666666
Q ss_pred eeccCCcEEEEEEEEEEeecCCCCEEEEEEEeecchhhH
Q 002152 700 ELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEK 738 (959)
Q Consensus 700 ~~~~dG~~~~v~v~~~pi~d~~g~~~gvv~v~~DITerk 738 (959)
.+++|..+|+.++..|+++.+|.+.+++++++|||+++
T Consensus 78 -~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DITer~ 115 (115)
T 4eet_B 78 -YTKSGKKFWNLLHLQPVRDQKGELQYFIGVQLDGSDHV 115 (115)
T ss_dssp -ECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECSCCC
T ss_pred -ecCCCCEEEEEEEEEEEECCCCCEEEEEEEEEeecccC
Confidence 67899999999999999999999999999999999874
No 54
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=99.37 E-value=3.5e-12 Score=117.42 Aligned_cols=123 Identities=12% Similarity=0.074 Sum_probs=98.6
Q ss_pred HHHHHHHHHHhcCccEEEEc---CCCceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHHHHcCCCcceE
Q 002152 616 VACEMVRLIETATAPIFGVD---SSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNV 692 (959)
Q Consensus 616 ~~~~l~~lie~~~~~I~~~D---~dg~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~ 692 (959)
.+++++.++++++++++++| .+|+++++|+++++++|++.++++|+++. .+++++........+...+..+.....
T Consensus 4 ~~~~~~~~~~~~~~~i~~~d~~d~~~~i~~~N~~~~~~~g~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (130)
T 2z6d_A 4 VSQELKTALSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCR-FLQGPDTDKNEVAKIRDCVKNGKSYCG 82 (130)
T ss_dssp ---CHHHHHHHTTCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG-GGCCTTSCHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHhcccceeeeeccCCCCcEEEecHHHHHHhCcCHHHHcCCChh-hccCCCCCchHHHHHHHHHHcCCccee
Confidence 34567899999999999999 99999999999999999999999999987 777776655555555555555555555
Q ss_pred EEEEEeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEeecchhhHHHHHH
Q 002152 693 ELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDK 743 (959)
Q Consensus 693 e~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~~~gvv~v~~DITerk~~E~~ 743 (959)
++.. .+++|..+|+.+...|+.+.+|.+.|++++++|||++|++|++
T Consensus 83 ~~~~----~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~~e~e 129 (130)
T 2z6d_A 83 RLLN----YKKDGTPFWNLLTVTPIKDDQGNTIKFIGMQVEVSKYTEGVND 129 (130)
T ss_dssp EEEE----ECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCTTC-----
T ss_pred EEEE----EcCCCcEEEEEEEEEEEECCCCCeeEEEEEEecchHHHHhhcc
Confidence 5554 5788999999999999999999999999999999999987753
No 55
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=99.37 E-value=7.5e-13 Score=122.97 Aligned_cols=115 Identities=9% Similarity=0.140 Sum_probs=87.3
Q ss_pred HHHHHHHhcCccEEEEcCCCceehhcHHHHHHhCCCcccccCCCccccccCCCch-HHHHHHHHHHHcCCCcceEEEEEE
Q 002152 619 EMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQ-GAVENLICRALLGEEDKNVELKLR 697 (959)
Q Consensus 619 ~l~~lie~~~~~I~~~D~dg~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~-~~~~~~l~~~l~~~~~~~~e~~~~ 697 (959)
.|+.++++++++++ +|.+|+|+++|+++++++||+.++++|+++. .+++++.. ..+...+...+..+.....++.+
T Consensus 4 ~~~~~~~~~~~~i~-~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~- 80 (120)
T 3mqq_A 4 DYKTAFHLAPIGLV-LSRDRVIEDCNDELAAIFRCARADLIGRSFE-VLYPSSDEFERIGERISPVMIAHGSYADDRIM- 80 (120)
T ss_dssp CHHHHHHHCSSEEE-EEETTEEEEECHHHHHHTTSCHHHHTTCBGG-GGSSSHHHHHHHHHHHHHHHHHHSCEEEEEEE-
T ss_pred hHHHHHhcCCceEE-EecCCEEHHHHHHHHHHhCcCHHHhCCCchh-hccCChhhHHHHHHHHHHHHhcCCcceEEEEE-
Confidence 37889999999996 5789999999999999999999999999987 66655322 33334444444444445556665
Q ss_pred eeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEeecchhhHHH
Q 002152 698 KFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVL 740 (959)
Q Consensus 698 ~~~~~~dG~~~~v~v~~~pi~d~~g~~~gvv~v~~DITerk~~ 740 (959)
.+++|..+|+.++..|+ +.++...+++++++|||++|++
T Consensus 81 ---~~~dG~~~~~~~~~~~~-~~~~~~~~~v~~~~DITerk~~ 119 (120)
T 3mqq_A 81 ---KRAGGELFWCHVTGRAL-DRTAPLAAGVWTFEDLSATRRV 119 (120)
T ss_dssp ---ECTTSCEEEEEEEEEES-STTSTTSSEEEEEEESCC----
T ss_pred ---EeCCCCEEEEEEEEEEC-CCCCCceeEEEEEEcccHhhcc
Confidence 78999999999999998 5566667789999999999976
No 56
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=99.37 E-value=4.5e-12 Score=117.59 Aligned_cols=114 Identities=16% Similarity=0.162 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHHhcCccEEEEcCCCceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHHHHcCCCcc
Q 002152 611 DELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDK 690 (959)
Q Consensus 611 ~eL~~~~~~l~~lie~~~~~I~~~D~dg~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~l~~~~~~ 690 (959)
.+|++++++|+.++++++++|+++|.+|+|+++|+++++++||+.+|++|+++. .+.++.........+.....+ ...
T Consensus 4 ~~l~~se~~~~~l~e~~~d~i~~~d~~g~i~~vN~a~~~l~Gy~~~el~g~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~ 81 (117)
T 2r78_A 4 ENLYFQSNAYRALFEHAIDGIFIMDAEGHYLDVNPAICSAIGYTRDEFLALDWG-VLSRGVDSGWAAASLARIVGG-EPL 81 (117)
T ss_dssp CSHHHHHHHHHHHHHHCSSEEEEECTTSBEEEECHHHHHHHCCCHHHHTTCBTT-TTTTCSTTSHHHHHHHHHHTT-CCE
T ss_pred hHHHHhHHHHHHHHhcCCceEEEECCCCCEEEecHHHHHHHCcCHHHHcCCCHH-HhCCccchhHHHHHHHHHHcC-CcE
Confidence 457788889999999999999999999999999999999999999999999876 554443333333344444443 334
Q ss_pred eEEEEEEeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEeecch
Q 002152 691 NVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735 (959)
Q Consensus 691 ~~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~~~gvv~v~~DIT 735 (959)
..+.++ .++||+.+|+.++..|+. +|. ++++++|||
T Consensus 82 ~~e~~~----~~kdG~~~~v~~~~~~~~--~g~---~~~i~~DIT 117 (117)
T 2r78_A 82 REERTV----WTRNGDQLTVELSAHLLP--DGK---ILGIARDVS 117 (117)
T ss_dssp EEEEEE----ECTTSCEEEEEEEEEECT--TSC---EEEEEEC--
T ss_pred EEEEEE----EecCCCEEEEEEEEEEec--CCe---EEEEEEeCC
Confidence 455555 789999999999999986 455 567889998
No 57
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=99.36 E-value=2.9e-12 Score=117.68 Aligned_cols=124 Identities=8% Similarity=0.011 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCeeeeCCC-CcEEeecHHHHHHhCCCchhhcCCCcccccccccccccChhhHHHH
Q 002152 739 VLMDKFIRLQGDYEAIIQSVNPLIPPIFASDEN-ACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKF 817 (959)
Q Consensus 739 ~~E~~L~~se~~l~~i~e~~~~~i~~I~~~D~~-g~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~ 817 (959)
+++++|++++++++.++++++.+ +|.+|.+ |+++++|+++++++|++.+++.|+... +....++++...+
T Consensus 1 ~~e~~l~~~~~~~~~~~~~~~~~---i~~~d~~~~~i~~~n~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~~~~~ 71 (125)
T 3eeh_A 1 RAKQQAAKSERRVRELTEATNDI---LWEFTADLSEVLVINSAYEDIWGRSVAKLRENPHD------FLNGIHPEDRELM 71 (125)
T ss_dssp ---------CHHHHHHHSCCCCE---EEEEETTSSCEEEECTHHHHHHSSCHHHHHHCGGG------GGGGBCHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhcCCce---EEEEEcCCCcEEEecHHHHHHHCCCHHHHccCcHH------HHHhcCHHHHHHH
Confidence 35678888999999999999854 9999999 999999999999999999999987521 2346678888888
Q ss_pred HHHHHhhhcCCCcceeeEEEEccCCcEEEEEEEEeeeeCCCCCEEEEEEEEeecc
Q 002152 818 MILLYQGITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILV 872 (959)
Q Consensus 818 ~~~l~~~~~~~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~i~g~v~i~~DIT 872 (959)
...+.... .+.....++++.+++|+.+|+.++..|+.+.+|.+.+++++++|||
T Consensus 72 ~~~~~~~~-~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 125 (125)
T 3eeh_A 72 KDTMQSLM-DGESADVECRVNATEEYQRWVWIQGEPITNDAGETVRVAGFARDIT 125 (125)
T ss_dssp HHHHHHHH-TTCCEEEEEEECGGGTTCEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred HHHHHHHH-cCCCccEEEEEEcCCCCEEEEEEecEEEECCCCCEEEEEEEEEecC
Confidence 77777744 4446788999999999999999999999999999999999999998
No 58
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=99.36 E-value=5.7e-12 Score=115.15 Aligned_cols=120 Identities=11% Similarity=0.163 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHhcCCCCCCeeeeCCCCcEEeecHHHHHHhCCCchhhcCCCcccccccccccccChhhHHHHHHHHHhhh
Q 002152 746 RLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGI 825 (959)
Q Consensus 746 ~se~~l~~i~e~~~~~i~~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l~~~~ 825 (959)
+++.+++.++++++. +++++|.+|+++++|+++++++|++.++++|+.+. . +.+++....+...+...+
T Consensus 4 ~~~~~~~~~~~~~~~---~i~~~d~~~~i~~~N~~~~~~~g~~~~~~~g~~~~-~-------~~~~~~~~~~~~~~~~~~ 72 (124)
T 3lyx_A 4 DILKQRAKAFDYVFD---AIVVTDLQGFIIDWNKGSETLYGYSKEQAIGQPVN-M-------LHVPGDTEHITSEVISAV 72 (124)
T ss_dssp CHHHHHHHGGGTCSS---EEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBGG-G-------GSCTTTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhcCc---eEEEECCCCcEeehhhHHHHHhCCCHHHHcCCCHH-H-------hcCcchhhHHHHHHHHHH
Confidence 346678899999875 49999999999999999999999999999999755 2 223455555555666666
Q ss_pred cCCCcceeeEEEEccCCcEEEEEEEEeeeeCCCCCEEEEEEEEeecccccH
Q 002152 826 TGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQ 876 (959)
Q Consensus 826 ~~~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~i~g~v~i~~DITerk~ 876 (959)
.++..+..++.+..++|..+|+.++..|+.+.+|.+.|++++++|||++|+
T Consensus 73 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~ 123 (124)
T 3lyx_A 73 ENQGKWTGEIRMLHKDGHIGWIESMCVPIYGENYQMVGALGINRDITKRKK 123 (124)
T ss_dssp HHTSCEEEEEEEECTTSCEEEEEEEEEEEECSTTCEEEEEEEEEECSCC--
T ss_pred HcCCcccceEEEEccCCCEEEEEEEEEEEECCCCCEEEEEEEEecchhhhc
Confidence 666678889999999999999999999999999999999999999999875
No 59
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=99.36 E-value=7.1e-12 Score=113.86 Aligned_cols=110 Identities=11% Similarity=0.081 Sum_probs=91.2
Q ss_pred HHhcCCCCCCeeeeCC---CCcEEeecHHHHHHhCCCchhhcCCCcccccccccccccChhhHHHHHHHHHhhhcCCCcc
Q 002152 755 IQSVNPLIPPIFASDE---NACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQGTE 831 (959)
Q Consensus 755 ~e~~~~~i~~I~~~D~---~g~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l~~~~~~~~~~ 831 (959)
+++++. +++++|. +|+++++|+++++++||+.++++|+.+.. +.++++...+...+.+.+..+..+
T Consensus 3 l~~~~~---~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 71 (115)
T 4eet_B 3 PEFIEK---NFVITDPRLPDNPIIFASDGFLELTEYSREEILGRNARF--------LQGPETDQATVQKIRDAIRDQRET 71 (115)
T ss_dssp --CCCC---SEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGG--------GCCTTSCHHHHHHHHHHHHTTCCE
T ss_pred cccCCC---cEEEEcCCCCCCcEEEEcHHHHHHHCcCHHHHhCCCHHH--------hcCCCCChHHHHHHHHHHHcCCCc
Confidence 455554 5999999 99999999999999999999999998532 333444444555666667777788
Q ss_pred eeeEEEEccCCcEEEEEEEEeeeeCCCCCEEEEEEEEeeccccc
Q 002152 832 NFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDL 875 (959)
Q Consensus 832 ~~e~~~~~~dG~~~~v~~~~~pi~d~~G~i~g~v~i~~DITerk 875 (959)
..++++.+++|+.+|+.++..|+.+.+|.+.+++++++|||+++
T Consensus 72 ~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DITer~ 115 (115)
T 4eet_B 72 TVQLINYTKSGKKFWNLLHLQPVRDQKGELQYFIGVQLDGSDHV 115 (115)
T ss_dssp EEEEEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECSCCC
T ss_pred ceEEEEecCCCCEEEEEEEEEEEECCCCCEEEEEEEEEeecccC
Confidence 88999999999999999999999999999999999999999874
No 60
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=99.35 E-value=1.7e-12 Score=126.66 Aligned_cols=126 Identities=10% Similarity=0.106 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCeeeeC-CCCcEEeecHHHHHHhCCCchhhcCCCcccccccccccccChhhHHHHHHHHHh
Q 002152 745 IRLQGDYEAIIQSVNPLIPPIFASD-ENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQ 823 (959)
Q Consensus 745 ~~se~~l~~i~e~~~~~i~~I~~~D-~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l~~ 823 (959)
..++++|+.++++++. +++++| .+|+++++|+++++++|++ +++|+++.+ +++ +.....+...+.+
T Consensus 13 ~~~~~~~~~~~~~~~~---~i~~~d~~~~~i~~~N~~~~~~~g~~--~~~G~~~~~-~~~-------~~~~~~~~~~~~~ 79 (158)
T 3k3c_A 13 VGAAEDVRRIFEHIPA---ILVGLEGPDHRFVAVNAAYRGFSPLL--DTVGQPARE-VYP-------ELEGQQIYEMLDR 79 (158)
T ss_dssp TCCHHHHHHHHHHCSS---EEEEEETTTTEEEEECHHHHHHCTTC--CSTTSBHHH-HSG-------GGGGTTHHHHHHH
T ss_pred HHHHHHHHHHHhcCCc---eEEEEECCCcEeHHHHHHHHHHcCCc--hhcCCcHHH-hCC-------chhHHHHHHHHHH
Confidence 3456689999999985 499999 9999999999999999999 899998653 222 3333334555666
Q ss_pred hhcCCCcce-eeEEE--EccC--CcEEEEEEEEeeeeCCCCCEEEEEEEEeecccccHHHHHHHh
Q 002152 824 GITGQGTEN-FPFGF--FNRQ--GQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQG 883 (959)
Q Consensus 824 ~~~~~~~~~-~e~~~--~~~d--G~~~~v~~~~~pi~d~~G~i~g~v~i~~DITerk~~Elelq~ 883 (959)
++..+.+.. .+..+ .+.+ |..+|+.++..|+.+.+|.+.|++++++|||++|++|.++++
T Consensus 80 ~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pi~~~~g~~~g~~~~~~DITe~k~~e~~l~~ 144 (158)
T 3k3c_A 80 VYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSIEGVQLIVDDVTSRVRARQAAEA 144 (158)
T ss_dssp HHHHCCCEEEEEEEEEEESSSSCEEEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHHHHHH
T ss_pred HHHhCCcccccceeEEeccCCCCcceEEEEEEEEEeECCCCCEEEEEEEEEehhHHHHHHHHHHH
Confidence 664343433 23333 3222 778999999999999999999999999999999998877654
No 61
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=99.35 E-value=2e-12 Score=118.83 Aligned_cols=121 Identities=12% Similarity=0.180 Sum_probs=99.4
Q ss_pred chHHHHHHHHHHHHHHHhcCccEEEEcCC-CceehhcHHHHHHhCCCcccccCCC--ccccccCCCchHHHHHHHHHHHc
Q 002152 609 GVDELSSVACEMVRLIETATAPIFGVDSS-GTINGWNAKVAELTGLPASEAMGKS--LIDEVVHEESQGAVENLICRALL 685 (959)
Q Consensus 609 ~~~eL~~~~~~l~~lie~~~~~I~~~D~d-g~iv~~N~~~~~l~G~~~eeliGk~--~~~~l~~~~~~~~~~~~l~~~l~ 685 (959)
++++|++.+++++.+++++++++|++|.+ |+++++|+++++++|++.++++|+. +. +++++++...+...+.....
T Consensus 2 ~e~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 80 (125)
T 3eeh_A 2 AKQQAAKSERRVRELTEATNDILWEFTADLSEVLVINSAYEDIWGRSVAKLRENPHDFL-NGIHPEDRELMKDTMQSLMD 80 (125)
T ss_dssp --------CHHHHHHHSCCCCEEEEEETTSSCEEEECTHHHHHHSSCHHHHHHCGGGGG-GGBCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhcCCceEEEEEcCCCcEEEecHHHHHHHCCCHHHHccCcHHHH-HhcCHHHHHHHHHHHHHHHc
Confidence 45667778889999999999999999999 9999999999999999999999887 55 78888888877777777554
Q ss_pred CCCcceEEEEEEeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEeecch
Q 002152 686 GEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735 (959)
Q Consensus 686 ~~~~~~~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~~~gvv~v~~DIT 735 (959)
+ .....++++ .+++|..+|+.+...|+.+.+|.+.+++++++|||
T Consensus 81 ~-~~~~~e~~~----~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 125 (125)
T 3eeh_A 81 G-ESADVECRV----NATEEYQRWVWIQGEPITNDAGETVRVAGFARDIT 125 (125)
T ss_dssp T-CCEEEEEEE----CGGGTTCEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred C-CCccEEEEE----EcCCCCEEEEEEecEEEECCCCCEEEEEEEEEecC
Confidence 4 344566666 67889999999999999999999999999999997
No 62
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=99.35 E-value=8.7e-12 Score=117.73 Aligned_cols=117 Identities=11% Similarity=0.105 Sum_probs=97.3
Q ss_pred HHHHHHhcCCCCCCeeeeCC---CCcEEeecHHHHHHhCCCchhhcCCCcccccccccccccChhhHHHHHHHHHhhhcC
Q 002152 751 YEAIIQSVNPLIPPIFASDE---NACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITG 827 (959)
Q Consensus 751 l~~i~e~~~~~i~~I~~~D~---~g~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l~~~~~~ 827 (959)
++.++++++. +++++|. +|+++++|+++++++|++.++++|+.+.. +.++++...+...+...+..
T Consensus 4 l~~~~~~~~~---~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~--------~~~~~~~~~~~~~~~~~~~~ 72 (146)
T 2v0u_A 4 LATTLERIEK---NFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRF--------LQGPETDRATVRKIRDAIDN 72 (146)
T ss_dssp CCCTGGGSSS---CEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGG--------GCCTTSCHHHHHHHHHHHHT
T ss_pred HHHHHhcCCC---cEEEEcCCCCCceEEEEcHHHHHHHCcCHHHHcCCCHHH--------hcCCcCChHHHHHHHHHHhc
Confidence 3456777765 4999999 99999999999999999999999997543 33344444555566666767
Q ss_pred CCcceeeEEEEccCCcEEEEEEEEeeeeCCCCCEEEEEEEEeecccccHHH
Q 002152 828 QGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPA 878 (959)
Q Consensus 828 ~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~i~g~v~i~~DITerk~~E 878 (959)
+..+..++.+.+++|..+|+.++..|+.+.+|.+.+++++++|||++|+.+
T Consensus 73 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~~~ 123 (146)
T 2v0u_A 73 QTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVRDA 123 (146)
T ss_dssp TCCEEEEEEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEEESSCCCHH
T ss_pred CCCcceEEEEEecCCcEEEEEEEEEEeECCCCCEEEEEEEEeechHHHHHH
Confidence 777888999999999999999999999999999999999999999999833
No 63
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=99.35 E-value=1.9e-12 Score=118.81 Aligned_cols=115 Identities=17% Similarity=0.171 Sum_probs=103.8
Q ss_pred HHHHHHHHHHhcCccEEEEcCCCceehhcHHHHHHhCCCcccccCCCc--cccccCCCchHHHHHHHHHHHcCCCcceEE
Q 002152 616 VACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSL--IDEVVHEESQGAVENLICRALLGEEDKNVE 693 (959)
Q Consensus 616 ~~~~l~~lie~~~~~I~~~D~dg~iv~~N~~~~~l~G~~~eeliGk~~--~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e 693 (959)
++++|+.+++++++++|.+|.+|.++++|+++++++||+.+++.++.. . +++||++.+.+...+..+..++.....+
T Consensus 2 s~~~~~~l~~~~~~~i~~~d~~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~-~~i~p~d~~~~~~~~~~~~~~~~~~~~e 80 (118)
T 3icy_A 2 NAEELQALVDNIPAAIYHLDVSGQATIRFRPPAFLKTLVSEHAGTTRLNTL-SMIHHDDRHMLSNAYSKLREAKHSLTLV 80 (118)
T ss_dssp HHHHHHHHHTTCCCCCEEECTTSCEEECCCCCGGGGGGEEEETTEEEEGGG-GGBCGGGHHHHHHHHHHHHHSCCEEEEE
T ss_pred cHHHHHHHHhcCCceEEEEEcCCCceEEechhHhhcCCCHHHccCChhHHH-HHcCHHHHHHHHHHHHHHHhcCCCceEE
Confidence 356789999999999999999999999999999999999999887753 5 7899999999988888888777777777
Q ss_pred EEEEeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEeecch
Q 002152 694 LKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735 (959)
Q Consensus 694 ~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~~~gvv~v~~DIT 735 (959)
+++ .+++|+.+|+...+.|+++.+|.+.+++++++|||
T Consensus 81 ~r~----~~~~g~~~w~~~~~~~~~~~~g~~~~~~g~~~DIT 118 (118)
T 3icy_A 81 YRI----VTPEGKLHWIEDHMRSSFSDDGLFSGIDGILCEVT 118 (118)
T ss_dssp EEE----ECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred EEE----ECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEecC
Confidence 777 68899999999999999999999999999999998
No 64
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=99.35 E-value=7.9e-12 Score=130.80 Aligned_cols=111 Identities=13% Similarity=0.039 Sum_probs=92.5
Q ss_pred eeeeCCCCcEEeecHHHHHHhCCCchhhcCCCcccccccccccccChhhHHHHHHHHHhhhcCCCcceeeEEEEccCCcE
Q 002152 765 IFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQGQF 844 (959)
Q Consensus 765 I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l~~~~~~~~~~~~e~~~~~~dG~~ 844 (959)
|+++|.+|+|+++|+++++++||+++|++|++... +. ++.....+...+.+.+..+..+..+++.+++||+.
T Consensus 2 i~i~D~~g~i~~~N~a~~~l~Gy~~~el~G~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~ 73 (227)
T 3ewk_A 2 VSITDLQGRILYANDNFCAVSRYGREELVGQDHRI-VN-------SGYHGKAYIRDMWRTISRGNIWQGEFCNRRKDGTR 73 (227)
T ss_dssp EEEEETTCBEEEECHHHHHHTTCCHHHHTTSBGGG-GC-------CSCSCHHHHHHHHHHHTTTCCEEEEEEEECSSSCE
T ss_pred EEEECCCCcEEehHHHHHHHHCcCHHHHcCCCHHH-cC-------CCCCCHHHHHHHHHHHHcCCeEEEEEEEEcCCCCE
Confidence 78899999999999999999999999999997542 21 12222233444555666677889999999999999
Q ss_pred EEEEEEEeeeeCCCCCEEEEEEEEeecccccHHHHHHHh
Q 002152 845 VEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQG 883 (959)
Q Consensus 845 ~~v~~~~~pi~d~~G~i~g~v~i~~DITerk~~Elelq~ 883 (959)
+|+..+..|++|.+|.+.+++++.+|||++|++|.++++
T Consensus 74 ~~~~~~~~p~~d~~g~~~~~~~~~~DIT~~k~~e~~l~~ 112 (227)
T 3ewk_A 74 YWVDSTIVPLMDNAGKPRQYISIRRDITAQKEAEAQLAR 112 (227)
T ss_dssp EEEEEEEEEEECSSSCEEEEEEEEEECTTTTHHHHHHHH
T ss_pred EeeeeEEEEEEcCCCCEEEEEEEEEehhhHHHHHHHHHH
Confidence 999999999999999999999999999999999877654
No 65
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=99.35 E-value=4.9e-12 Score=115.81 Aligned_cols=105 Identities=16% Similarity=0.101 Sum_probs=85.2
Q ss_pred cCccEEEEcC---CCceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHHHHcCCCcceEEEEEEeeeecc
Q 002152 627 ATAPIFGVDS---SGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQK 703 (959)
Q Consensus 627 ~~~~I~~~D~---dg~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~~~~~~~~~ 703 (959)
++++|+++|. +|+|+++|+++++++||+.+|++|++.. .+.+++........+...+..+.....++.. .++
T Consensus 2 ~~~~i~i~d~~~~~g~i~~~N~a~~~l~Gy~~~e~~G~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~----~~k 76 (109)
T 1n9l_A 2 LRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCR-FLQGEGTDPKEVQKIRDAIKKGEACSVRLLN----YRK 76 (109)
T ss_dssp CSCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG-GGCCTTCCHHHHHHHHHHHHHTCCEEEEEEE----ECT
T ss_pred CccEEEEEcCCCCCCeEEEEchHHHHHHCcCHHHHcCCCch-hcCCCCCCHHHHHHHHHHHHcCCcEEEEEEE----EcC
Confidence 5789999994 7999999999999999999999999976 5656654333333444444444555566665 689
Q ss_pred CCcEEEEEEEEEEeecCCCCEEEEEEEeecchh
Q 002152 704 QHSVVYILVNACTSRDYKNNVKGVCFVGQDITH 736 (959)
Q Consensus 704 dG~~~~v~v~~~pi~d~~g~~~gvv~v~~DITe 736 (959)
||+.+|+.++..|++|.+|.+.+++++.+|||+
T Consensus 77 dG~~~~~~~~~~pi~d~~G~~~~~v~~~~DITe 109 (109)
T 1n9l_A 77 DGTPFWNLLTVTPIKTPDGRVSKFVGVQVDVTS 109 (109)
T ss_dssp TSCEEEEEEEEEEEECTTSCEEEEEEEEEECCC
T ss_pred CCCEEEEEEEEEEEECCCCCEEEEEEEEEeCCC
Confidence 999999999999999999999999999999995
No 66
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=99.34 E-value=2.1e-12 Score=119.97 Aligned_cols=116 Identities=10% Similarity=0.113 Sum_probs=87.7
Q ss_pred HHHHHHHhcCCCCCCeeeeCCCCcEEeecHHHHHHhCCCchhhcCCCcccccccccccccChhhHHHHHHHHHhhhcCCC
Q 002152 750 DYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQG 829 (959)
Q Consensus 750 ~l~~i~e~~~~~i~~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l~~~~~~~~ 829 (959)
+|+.++++++.+ ++ +|.+|+|+++|+++++++||+.++++|+.+.. +++ .+++...+...+.+.+.++.
T Consensus 4 ~~~~~~~~~~~~---i~-~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~ 72 (120)
T 3mqq_A 4 DYKTAFHLAPIG---LV-LSRDRVIEDCNDELAAIFRCARADLIGRSFEV-LYP------SSDEFERIGERISPVMIAHG 72 (120)
T ss_dssp CHHHHHHHCSSE---EE-EEETTEEEEECHHHHHHTTSCHHHHTTCBGGG-GSS------SHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHhcCCce---EE-EecCCEEHHHHHHHHHHhCcCHHHhCCCchhh-ccC------ChhhHHHHHHHHHHHHhcCC
Confidence 478899998854 65 57899999999999999999999999998542 222 12233444445555555555
Q ss_pred cceeeEEEEccCCcEEEEEEEEeeeeCCCCCEEEEEEEEeecccccHH
Q 002152 830 TENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQP 877 (959)
Q Consensus 830 ~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~i~g~v~i~~DITerk~~ 877 (959)
.+..++++.+++|+.+|+.++..|+ +.+|...+++++++|||++|+.
T Consensus 73 ~~~~e~~~~~~dG~~~~~~~~~~~~-~~~~~~~~~v~~~~DITerk~~ 119 (120)
T 3mqq_A 73 SYADDRIMKRAGGELFWCHVTGRAL-DRTAPLAAGVWTFEDLSATRRV 119 (120)
T ss_dssp CEEEEEEEECTTSCEEEEEEEEEES-STTSTTSSEEEEEEESCC----
T ss_pred cceEEEEEEeCCCCEEEEEEEEEEC-CCCCCceeEEEEEEcccHhhcc
Confidence 7888999999999999999999998 5666667889999999999875
No 67
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=99.34 E-value=2.7e-12 Score=125.46 Aligned_cols=128 Identities=13% Similarity=0.070 Sum_probs=104.4
Q ss_pred HHHHHHHHHhcCCCCCCeeeeCCCC---cEEeecHHHHHHhCCCchhhcCCCcccccccccccccChhhHHHHHHHHHhh
Q 002152 748 QGDYEAIIQSVNPLIPPIFASDENA---CCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQG 824 (959)
Q Consensus 748 e~~l~~i~e~~~~~i~~I~~~D~~g---~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l~~~ 824 (959)
++.++.++++++. +++++|.+| +++++|+++++++|++.++++|+.+.. ++ +++....+...+...
T Consensus 24 ~~~~~~i~~~~~~---~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~-~~-------~~~~~~~~~~~~~~~ 92 (162)
T 3sw1_A 24 AQLLQSMVDASND---GIVVAEKEGDDTILIYVNAAFEYLTGYSRDEILYQDCRF-LQ-------GDDRDQLGRARIRKA 92 (162)
T ss_dssp HHHHHHHHHTCSS---EEEEEEEETTEEEEEEECHHHHHHHTCCHHHHTTSBGGG-GT-------TTCCCCHHHHHHHHH
T ss_pred HHHHHHHHhhccC---cEEEEeCCCCccEEEEECHHHHHHHCCCHHHHcCCCcce-ec-------CCCcCHHHHHHHHHH
Confidence 4578899999875 499999999 999999999999999999999997643 22 233333334445555
Q ss_pred hcCCCcceeeEEEEccCCcEEEEEEEEeeeeCCCCCEEEEEEEEeecccccHHHHHHHhHHH
Q 002152 825 ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLED 886 (959)
Q Consensus 825 ~~~~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~i~g~v~i~~DITerk~~Elelq~~ae 886 (959)
+..+..+..++.+.+++|..+|+.++..|+.+.+|.+.+++++++|||++|+++.++++..+
T Consensus 93 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DiTe~k~~e~~l~~~~~ 154 (162)
T 3sw1_A 93 MAEGRPCREVLRNYRKDGSAFWNELSITPVKSDFDQRTYFIGIQKDVSRQVELERELAELRA 154 (162)
T ss_dssp HHHTCCEEEEEEEECTTCCEEEEEEEEEEEECSSSSCEEEEEEEEECHHHHHHHHHHHHHTC
T ss_pred HhcCCCCcceEEEECCCCCEEEEEEEEEEeecCCCCEEEEEEEEEeCcHHHHHHHHHHHHHH
Confidence 55566778888899999999999999999999999999999999999999999887755443
No 68
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=99.34 E-value=6e-12 Score=116.72 Aligned_cols=110 Identities=15% Similarity=0.099 Sum_probs=73.8
Q ss_pred CCeeeeCCCCcEEeecHHHHHHhCCCchhhcCCCcccccccccccccChhhHHHHHHHHHhhhcCCC----cceeeEEEE
Q 002152 763 PPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQG----TENFPFGFF 838 (959)
Q Consensus 763 ~~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l~~~~~~~~----~~~~e~~~~ 838 (959)
++|+++|.+|+|++||+++++++||+.++++|+++.. +.++++.......+......+. ....++..+
T Consensus 4 d~i~~~d~~g~i~~~N~a~~~l~G~~~~el~G~~~~~--------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (119)
T 2vv6_A 4 DAMIVIDGHGIIQLFSTAAERLFGWSELEAIGQNVNI--------LMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVTGK 75 (119)
T ss_dssp CEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGG--------GSCTTHHHHHHHHHHHHHHHCCCSSTTTCEEEEEE
T ss_pred ceEEEECCCCeEEEEhHHHHHHhCCCHHHHcCCCHHH--------hCCchHHHHHHHHHHHHhcCCCcccCCCceEEEEE
Confidence 4699999999999999999999999999999997543 2223333332333333322211 134567789
Q ss_pred ccCCcEEEEEEEEeeeeCCCCCEEEEEEEEeecccccHHHHHHH
Q 002152 839 NRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQ 882 (959)
Q Consensus 839 ~~dG~~~~v~~~~~pi~d~~G~i~g~v~i~~DITerk~~Elelq 882 (959)
++||+.+|+.++..|+.+.+ ..+++++++|||++|++|.+++
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~--~~~~~~~~~DITerk~~e~~l~ 117 (119)
T 2vv6_A 76 RRDGTTFPMHLSIGEMQSGG--EPYFTGFVRDLTEHQQTQARLQ 117 (119)
T ss_dssp CTTSCEEEEEEEEEEEEETT--EEEEEEEEEECC----------
T ss_pred eCCCCEEEEEEEEEEEEECC--eEEEEEEEEEcHHHHHHHHHHH
Confidence 99999999999999998643 3468899999999999887654
No 69
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=99.34 E-value=9.3e-12 Score=114.55 Aligned_cols=124 Identities=12% Similarity=0.131 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHhcCCCCCCeeeeC---CCCcEEeecHHHHHHhCCCchhhcCCCcccccccccccccChhhHHHHHHHHH
Q 002152 746 RLQGDYEAIIQSVNPLIPPIFASD---ENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLY 822 (959)
Q Consensus 746 ~se~~l~~i~e~~~~~i~~I~~~D---~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l~ 822 (959)
+++..++.++++++.+ ++++| .+|+++++|+++++++|++.++++|+.+.. +.++++...+...+.
T Consensus 3 ~~~~~~~~~~~~~~~~---i~~~d~~d~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~--------~~~~~~~~~~~~~~~ 71 (130)
T 2z6d_A 3 RVSQELKTALSTLQQT---FVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRF--------LQGPDTDKNEVAKIR 71 (130)
T ss_dssp ----CHHHHHHHTTCE---EEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGG--------GCCTTSCHHHHHHHH
T ss_pred hHHHHHHHHHHhcccc---eeeeeccCCCCcEEEecHHHHHHhCcCHHHHcCCChhh--------ccCCCCCchHHHHHH
Confidence 4566788999998754 99999 999999999999999999999999997643 222333344444555
Q ss_pred hhhcCCCcceeeEEEEccCCcEEEEEEEEeeeeCCCCCEEEEEEEEeecccccHHHHH
Q 002152 823 QGITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALE 880 (959)
Q Consensus 823 ~~~~~~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~i~g~v~i~~DITerk~~Ele 880 (959)
..+..+.....++...+++|+.+|+.+...|+.+.+|.+.+++++++|||++|+++.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~~e~e 129 (130)
T 2z6d_A 72 DCVKNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDQGNTIKFIGMQVEVSKYTEGVND 129 (130)
T ss_dssp HHHHTTCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCTTC-----
T ss_pred HHHHcCCcceeEEEEEcCCCcEEEEEEEEEEEECCCCCeeEEEEEEecchHHHHhhcc
Confidence 5666666777888889999999999999999999999999999999999999987643
No 70
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=99.32 E-value=1.1e-11 Score=114.95 Aligned_cols=113 Identities=18% Similarity=0.147 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCeeeeCCCCcEEeecHHHHHHhCCCchhhcCCCcccccccccccccChhhHHHHHHHHH
Q 002152 743 KFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLY 822 (959)
Q Consensus 743 ~L~~se~~l~~i~e~~~~~i~~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l~ 822 (959)
+|++++++|+.++++++. +|+++|.+|+++++|+++++++||+.+|++|+++.. +.. +.+.......+.
T Consensus 5 ~l~~se~~~~~l~e~~~d---~i~~~d~~g~i~~vN~a~~~l~Gy~~~el~g~~~~~-~~~-------~~~~~~~~~~~~ 73 (117)
T 2r78_A 5 NLYFQSNAYRALFEHAID---GIFIMDAEGHYLDVNPAICSAIGYTRDEFLALDWGV-LSR-------GVDSGWAAASLA 73 (117)
T ss_dssp SHHHHHHHHHHHHHHCSS---EEEEECTTSBEEEECHHHHHHHCCCHHHHTTCBTTT-TTT-------CSTTSHHHHHHH
T ss_pred HHHHhHHHHHHHHhcCCc---eEEEECCCCCEEEecHHHHHHHCcCHHHHcCCCHHH-hCC-------ccchhHHHHHHH
Confidence 467889999999999985 499999999999999999999999999999997432 211 111111112222
Q ss_pred hhhcCCCcceeeEEEEccCCcEEEEEEEEeeeeCCCCCEEEEEEEEeecc
Q 002152 823 QGITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILV 872 (959)
Q Consensus 823 ~~~~~~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~i~g~v~i~~DIT 872 (959)
.+..+..+..+.+++++||+.+|+.++..|+. +|. ++++++|||
T Consensus 74 -~~~~~~~~~~e~~~~~kdG~~~~v~~~~~~~~--~g~---~~~i~~DIT 117 (117)
T 2r78_A 74 -RIVGGEPLREERTVWTRNGDQLTVELSAHLLP--DGK---ILGIARDVS 117 (117)
T ss_dssp -HHHTTCCEEEEEEEECTTSCEEEEEEEEEECT--TSC---EEEEEEC--
T ss_pred -HHHcCCcEEEEEEEEecCCCEEEEEEEEEEec--CCe---EEEEEEeCC
Confidence 23344467788899999999999999999986 565 567889998
No 71
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=99.32 E-value=7.4e-12 Score=113.70 Aligned_cols=113 Identities=12% Similarity=0.134 Sum_probs=92.0
Q ss_pred HHHHHHHHHhcCCCCCCeeeeCCCCcEEeecHHHHHHhCCCchhhcCCCcccccccccccccChhhHHHHHHHHHhhhcC
Q 002152 748 QGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITG 827 (959)
Q Consensus 748 e~~l~~i~e~~~~~i~~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l~~~~~~ 827 (959)
+++++.++++++. +++++|.+|+++++|+++++++|++.++++|+.+.+ ++ |++...+...+..+..+
T Consensus 2 e~~~~~~~~~~~~---~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~-~~--------~~~~~~~~~~~~~~~~~ 69 (114)
T 3luq_A 2 DERLRLFTEHAPA---ALAMFDREMRYLAVSRRWREDYGLGDGDILGMSHYD-IF--------PEIGEEWKSVHRRGLAG 69 (114)
T ss_dssp CHHHHHHHHTCSS---EEEEEETTCBEEEECHHHHHHTTCCSSCCTTCBHHH-HC--------TTCCHHHHHHHHHHHTT
T ss_pred hHHHHHHHhcCCc---eEEEEcCCcEEEEECHHHHHHHCCCHHHHcCCcHHH-HC--------CccHHHHHHHHHHHhcC
Confidence 4678899999885 499999999999999999999999999999998653 22 33344455666667766
Q ss_pred CCcceeeEEEEccCCcEEEEEEEEeeeeCCCCCEEEEEEEEeecc
Q 002152 828 QGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILV 872 (959)
Q Consensus 828 ~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~i~g~v~i~~DIT 872 (959)
+.....+.++.+++|+.+|+.++..|+.+.+|.+.|++++++|||
T Consensus 70 ~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~g~~~~~~~~~~DIT 114 (114)
T 3luq_A 70 EVIRVEEDCFVRADGRTQWLRWEVRPWYEGEGRVGGVVIFTEDIT 114 (114)
T ss_dssp CCEEEEEEEEEC--CCEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred CcceeeeeEEEcCCCcEEEEEEEEEEeECCCCCEEEEEEEEeeCC
Confidence 655555558899999999999999999999999999999999998
No 72
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=99.32 E-value=4.9e-12 Score=123.68 Aligned_cols=137 Identities=14% Similarity=0.109 Sum_probs=87.9
Q ss_pred ccccccchHHHHHHHHHHHHHHHhcCccEEEEcCCCceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHH
Q 002152 603 NGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICR 682 (959)
Q Consensus 603 ~~~l~~~~~eL~~~~~~l~~lie~~~~~I~~~D~dg~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~ 682 (959)
...+.+..+++...+.++..+++.++++++++|.+|+|+++|+++++++|++.++++|+++. ++++++........+..
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~d~~g~i~~~N~~~~~l~g~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~ 103 (167)
T 1v9y_A 25 AEVIMKLTDADNAADGIFFPALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNID-MLIPRDLRPAHPEYIRH 103 (167)
T ss_dssp ---------------CCHHHHHHTCSSEEEEECTTSBEEEECHHHHHHHSCCGGGTTTSBGG-GGSCGGGTTTHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHhCCCCEEEECCCCcEEEECHHHHHHhCCCHHHHcCCChh-hccCccccchHHHHHHH
Confidence 33455556667777788999999999999999999999999999999999999999999988 88877766666666666
Q ss_pred HHcCCCc----ceEEEEEEeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEeecchhhHHHHHHHHH
Q 002152 683 ALLGEED----KNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIR 746 (959)
Q Consensus 683 ~l~~~~~----~~~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~~~gvv~v~~DITerk~~E~~L~~ 746 (959)
...++.. ...++.+ .+++|..+|+.+...|+ +.+|.+ +++++++|||++|+++++|+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~-~~~g~~-~~~~~~~DiT~~~~~e~~l~~ 165 (167)
T 1v9y_A 104 NREGGKARVEGMSRELQL----EKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQKEQTRQ 165 (167)
T ss_dssp HHC----------CEEEE----ECTTSCEEEEEEEEEEE-EETTEE-EEEEEEEC-------------
T ss_pred HhhcCCCcccccceEEEE----EcCCCcEEEEEEEEEEE-ecCCCE-EEEEEEecCcHHHHHHHHHHh
Confidence 6665433 2334444 67889999999999998 455665 489999999999999887754
No 73
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=99.31 E-value=5.8e-12 Score=122.95 Aligned_cols=124 Identities=7% Similarity=0.051 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCeeeeCCCCcEEeecHHHHHHhCCCchhhcCCCcccccccccccccChhhHHHHHHHH
Q 002152 742 DKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILL 821 (959)
Q Consensus 742 ~~L~~se~~l~~i~e~~~~~i~~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l 821 (959)
.++++++..++.++++++. +|+++|.+|+|++||+++++++|++.++++|+++.+ +++ . ....+...+
T Consensus 15 ~~~~~~~~~l~~il~~~~~---gi~v~D~~g~I~~~N~a~~~~~G~~~~eviG~~~~~-~~p-------~-~~~~~~~~l 82 (152)
T 3mxq_A 15 NAMAKSRLLLSELLDQLSF---ALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILE-LFP-------E-SADYLKRKI 82 (152)
T ss_dssp HHHHHHHHHHHHHHHHHCC---EEEEEETTSBEEEECHHHHHTSSSCHHHHTTSBHHH-HSG-------G-GHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCC---CEEEEcCCCEEEEECHHHHHHHCcCHHHHCCCCHHH-hcC-------C-hHHHHHHHH
Confidence 3566777888999999985 599999999999999999999999999999998663 333 2 444566677
Q ss_pred HhhhcCCCcce---------eeEEE---EccCCcEEEEEEEEeeeeCCCCCEEEEEEEEeecccccHH
Q 002152 822 YQGITGQGTEN---------FPFGF---FNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQP 877 (959)
Q Consensus 822 ~~~~~~~~~~~---------~e~~~---~~~dG~~~~v~~~~~pi~d~~G~i~g~v~i~~DITerk~~ 877 (959)
.+++..+.+.. +++.. ...+|...|..++..|+.|.+|++.|++.+++|||+++++
T Consensus 83 ~~vl~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~Pl~d~~G~v~gv~~ii~DVTe~~~a 150 (152)
T 3mxq_A 83 DTALVIESSSFSSWEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQASQ 150 (152)
T ss_dssp HHHHHHTSCEEEECCSSSCSSCC----------CCEEEEEEEEEEECTTSCEEEEEEEEEEEECC---
T ss_pred HHHHhcCCceeeecccccccccccccCCCCCCCcEEEEEEEEEEEECCCCCEEEEEEEEEECCHHHhc
Confidence 77776553321 11221 2346778899999999999999999999999999998764
No 74
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=99.30 E-value=4.4e-11 Score=120.74 Aligned_cols=152 Identities=7% Similarity=0.078 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEE-EEecCCCCCCccCCccCCCCchHH
Q 002152 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVV-SEIRRSDLEPYLGIHFPANDIPQA 289 (959)
Q Consensus 211 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~v~~vr~~~g~DRv~iY~F~~d~~G~vi-aE~~~~~~~s~lg~~~pa~dip~~ 289 (959)
+...++.++...|.+ +.|++++++.+++.+++++|+||+.||.+++| ....+ ++...++. .+..+|. ..-
T Consensus 27 ~~~~~L~~is~~l~~--~~dl~~il~~i~~~l~~~l~~d~~~i~l~~~~-~~~~~~~~~~~~~~---~~~~~~~---~~~ 97 (184)
T 3p01_A 27 AQMSLLTVLVQVTQA--SNSLEAILTPIATAFAESFAVNACILQMLEGQ-TLSTIQGFYSQQGT---VNNWLNQ---DPL 97 (184)
T ss_dssp HHHHHHHHHHHHHHH--CSSSHHHHHHHHHHHHHHHTCSEEEEEEEETT-EEEEEEEEEESSSS---CCCCGGG---CHH
T ss_pred HHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHhCCCeEEEEEecCC-ceeeeeeeccccCc---cCcccCC---CcH
Confidence 345566777778887 77999999999999999999999999999443 33333 33444433 2333442 234
Q ss_pred HHHHHHhCCEEEEecCCCCCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEe
Q 002152 290 ARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVC 369 (959)
Q Consensus 290 ar~ly~~~~~r~i~d~~~~~~~l~~~~~~~~~ldls~s~lRsvsp~h~~yl~nmgv~asl~v~i~~~~~~~~~LWGLi~~ 369 (959)
....+..++..+|+|+...|- -++.++++..|++|.|++||+.+| ++||+|.+
T Consensus 98 ~~~~~~~~~~~~i~d~~~~~~-----------------------~~~~~~~~~~~~~s~l~vPL~~~~----~~~GvL~l 150 (184)
T 3p01_A 98 TNEAIATGQIQVAANIAKDPK-----------------------LASISQYQDNGIQSHVVIPITYRN----EMLGVLSL 150 (184)
T ss_dssp HHHHHHHCSCEEESCGGGCHH-----------------------HHTCHHHHHHTCCEEEEEEEEETT----EEEEEEEE
T ss_pred HHHHHhhCCeEEEeccccCcc-----------------------ccchhHHHHhCccEEEEEEEEECC----EEEEEEEe
Confidence 556678888888999765441 112466888999999999999998 99999999
Q ss_pred ecCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 002152 370 HHTSPRYIPFPLRYACEFLVQAFSLQLYM 398 (959)
Q Consensus 370 hh~~pr~~~~~~r~~~~~l~~~~s~~l~~ 398 (959)
|+..|+.|+.++..+++.++.++++.|+.
T Consensus 151 ~~~~~~~f~~~d~~ll~~lA~q~aiAi~n 179 (184)
T 3p01_A 151 QWQQPISLREDELTLIHLSAQLVAIALTS 179 (184)
T ss_dssp EESSCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 77779999999999999999999988864
No 75
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=99.28 E-value=1.1e-11 Score=121.12 Aligned_cols=142 Identities=18% Similarity=0.177 Sum_probs=82.6
Q ss_pred EEeecchhhHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeeCCCCcEEeecHHHHHHhCCCchhhcCCCcccccccccccc
Q 002152 729 FVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRM 808 (959)
Q Consensus 729 ~v~~DITerk~~E~~L~~se~~l~~i~e~~~~~i~~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l 808 (959)
-+..|+++.++..+++.+++.+++.++++++. +++++|.+|+++++|+++++++|++.++++|+.+.. +
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~i~~~d~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~-~------- 88 (167)
T 1v9y_A 20 HMRQDAEVIMKLTDADNAADGIFFPALEQNMM---GAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDM-L------- 88 (167)
T ss_dssp --------------------CCHHHHHHTCSS---EEEEECTTSBEEEECHHHHHHHSCCGGGTTTSBGGG-G-------
T ss_pred HHHhhHHHHHHHHHHHhhhhHHHHHHHHhCCC---CEEEECCCCcEEEECHHHHHHhCCCHHHHcCCChhh-c-------
Confidence 34568888889999999999999999999975 499999999999999999999999999999987553 2
Q ss_pred cChhhHHHHHHHHHhhhcCCCc----ceeeEEEEccCCcEEEEEEEEeeeeCCCCCEEEEEEEEeecccccHHHHHHHh
Q 002152 809 KGQDMLTKFMILLYQGITGQGT----ENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQG 883 (959)
Q Consensus 809 ~~~e~~~~~~~~l~~~~~~~~~----~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~i~g~v~i~~DITerk~~Elelq~ 883 (959)
.++++...+...+.....++.. +..++.+.+++|..+|+.++..|+ +.+|.+. ++++++|||++++.+.++++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~g~~~-~~~~~~DiT~~~~~e~~l~~ 165 (167)
T 1v9y_A 89 IPRDLRPAHPEYIRHNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKVY-YLALVRDASVEMAQKEQTRQ 165 (167)
T ss_dssp SCGGGTTTHHHHHHHHHC----------CEEEEECTTSCEEEEEEEEEEE-EETTEEE-EEEEEEC-------------
T ss_pred cCccccchHHHHHHHHhhcCCCcccccceEEEEEcCCCcEEEEEEEEEEE-ecCCCEE-EEEEEecCcHHHHHHHHHHh
Confidence 2233333333444445544433 566788899999999999999998 5566664 89999999999988766543
No 76
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=99.27 E-value=6e-12 Score=116.76 Aligned_cols=120 Identities=14% Similarity=0.178 Sum_probs=91.4
Q ss_pred HHHHHhcCccEEEEcCCCceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHHHHcCCCcceEEEEEEeee
Q 002152 621 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFE 700 (959)
Q Consensus 621 ~~lie~~~~~I~~~D~dg~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~~~~~~ 700 (959)
+.++++++++++++|.+|+|+++|+++++++|++.++++|+++. +++++++.......+..+..++.. ..++.+
T Consensus 2 ~~l~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---- 75 (126)
T 3mjq_A 2 KNFLETIEDMILIINREGRLLYANTAVPKKLGYTHEELMSMHIL-TITSAGKMAEGEKILAELFAGKKE-SLPLSL---- 75 (126)
T ss_dssp CTTGGGCSSEEEEEETTSBEEEECTHHHHHHSCCHHHHHHSBHH-HHHCTTCHHHHHHHHHHHHHTCCS-EEEEEE----
T ss_pred hhHHhhCCceEEEEeCCCcEEEEcHHHHHHHCCCHHHHcCCCHH-HHcCchhHHHHHHHHHHHHhCCCc-eeEEEE----
Confidence 45789999999999999999999999999999999999999998 888888888788888888776655 555555
Q ss_pred eccCCcEEEEEEEEEEeecCCCCEEEEEEEeecchhhHHHHHHHHHHH
Q 002152 701 LQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQ 748 (959)
Q Consensus 701 ~~~dG~~~~v~v~~~pi~d~~g~~~gvv~v~~DITerk~~E~~L~~se 748 (959)
.+++|..+|+.++..|..+ +...+++++++|||++|++++++..+.
T Consensus 76 ~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~DITe~k~a~~~~~~~~ 121 (126)
T 3mjq_A 76 EKKEGTSIPAKARIWQGKW--HNEPCLFAIIKDLSKEERASSPPFLEH 121 (126)
T ss_dssp ECTTSCEEEEEEEEEEEES--SSSEEEEEEEEECC-------------
T ss_pred EccCCCEEEEEEEEEeeeE--CCceEEEEEEEechHHHHhhcccchhh
Confidence 5789999999999987664 335678999999999999998876543
No 77
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.27 E-value=3.2e-11 Score=133.88 Aligned_cols=118 Identities=12% Similarity=0.110 Sum_probs=99.5
Q ss_pred HHHHhcCCCCCCeeeeCC---CCcEEeecHHHHHHhCCCchhhcCCCcccccccccccccChhhHHHHHHHHHhhhcCCC
Q 002152 753 AIIQSVNPLIPPIFASDE---NACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQG 829 (959)
Q Consensus 753 ~i~e~~~~~i~~I~~~D~---~g~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l~~~~~~~~ 829 (959)
.++++++. +++++|. +|+|++||+++++++||++++++|+++.. +.++++.......+.+.+..+.
T Consensus 15 ~~~~~~~~---~i~~~D~~~~~g~i~~~N~a~~~l~G~~~~el~G~~~~~--------l~~~~~~~~~~~~~~~~~~~~~ 83 (332)
T 2wkq_A 15 TTLERIEK---NFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNARF--------LQGPETDRATVRKIRDAIDNQT 83 (332)
T ss_dssp CCGGGCCS---EEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGG--------GCCTTCCHHHHHHHHHHHHTTC
T ss_pred hHhhcCCC---cEEEecCCCCCCCEEEeehHHHHHhCCCHHHHcCCCchh--------hcCCCCCHHHHHHHHHHHHcCC
Confidence 34566664 5999999 99999999999999999999999998542 3344554455556667777777
Q ss_pred cceeeEEEEccCCcEEEEEEEEeeeeCCCCCEEEEEEEEeecccccHHHHHH
Q 002152 830 TENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEA 881 (959)
Q Consensus 830 ~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~i~g~v~i~~DITerk~~Elel 881 (959)
.+..++++.+++|+.+|+..+..|++|.+|.+.|++++.+|||++++.+.+.
T Consensus 84 ~~~~e~~~~~~dG~~~~~~~~~~pi~d~~g~~~~~v~~~~DITe~k~~e~~~ 135 (332)
T 2wkq_A 84 EVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVRDAAER 135 (332)
T ss_dssp CEEEEEEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEEESSCCCHHHHH
T ss_pred eeEEEEEEEcCCCCEEEEeeEEEEeEcCCCCEEEEEEEeccCchhhhhhhhc
Confidence 8889999999999999999999999999999999999999999999887654
No 78
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=99.27 E-value=2.3e-11 Score=113.49 Aligned_cols=121 Identities=17% Similarity=0.161 Sum_probs=89.3
Q ss_pred ccccchHHHHHHHHHHHHHHHhcCccEEEEcCCCceehhcHHHHHHhCCCcccc--cCCCccccccCCCchHHHHHHHHH
Q 002152 605 SKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEA--MGKSLIDEVVHEESQGAVENLICR 682 (959)
Q Consensus 605 ~l~~~~~eL~~~~~~l~~lie~~~~~I~~~D~dg~iv~~N~~~~~l~G~~~eel--iGk~~~~~l~~~~~~~~~~~~l~~ 682 (959)
++++++++|++++++|+.++++++++|+++|.+|+|+++|+++++++||+++++ +|+++. ++++ +...+...+..
T Consensus 4 ~r~~~e~~L~~~~~~~~~l~e~~~~~i~~~d~~g~i~~~N~a~~~~~G~~~~el~g~g~~~~-~~~~--~~~~~~~~~~~ 80 (126)
T 3bwl_A 4 ERKRREKRLEETSSRLEALFENSPDMIDVLDADGTICEVNQRFCAELGYDESEVLGRSIWEF-DLMF--DAEDVQTQLSG 80 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSSEEEEECTTCBEEEECHHHHHHHTCCGGGTTTSBGGGT-BTTC--CHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHhhCCcEEEEEcCCCCEEEEcHHHHHHhCCCHHHHhhCCCchh-hccC--CHHHHHHHHHH
Confidence 356778899999999999999999999999999999999999999999999999 567766 6666 33322222221
Q ss_pred HHcCCCcceEEEEEEeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEeecch
Q 002152 683 ALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735 (959)
Q Consensus 683 ~l~~~~~~~~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~~~gvv~v~~DIT 735 (959)
... +....++..+ .++||+.+|+.++..++.+ +|.. +++++++|||
T Consensus 81 ~~~-~~~~~~e~~~----~~~dG~~~~~~~~~~~~~~-~~~~-~~~~~~~DIT 126 (126)
T 3bwl_A 81 FSV-DERRKFEGLY----ERRDGSTMSVEVHLLRFNL-EGED-RFLAISRDIT 126 (126)
T ss_dssp CCT-TCEEEEEEEE----ECTTSCEEEEEEEEEEEEE-TTEE-EEEEEEEEC-
T ss_pred Hhc-CCCcceEEEE----EeCCCCEEEEEEEeEEEec-CCcE-EEEEEEEeCC
Confidence 111 2222334333 6889999999988888743 4443 5678899998
No 79
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.27 E-value=2.4e-11 Score=134.90 Aligned_cols=120 Identities=18% Similarity=0.073 Sum_probs=104.0
Q ss_pred HHHHhcCccEEEEcC---CCceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHHHHcCCCcceEEEEEEe
Q 002152 622 RLIETATAPIFGVDS---SGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRK 698 (959)
Q Consensus 622 ~lie~~~~~I~~~D~---dg~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~~~~ 698 (959)
.++++++++++++|. +|+|+++|+++++++||++++++|+++. .+.+++........+...+..+.....++++
T Consensus 15 ~~~~~~~~~i~~~D~~~~~g~i~~~N~a~~~l~G~~~~el~G~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-- 91 (332)
T 2wkq_A 15 TTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNAR-FLQGPETDRATVRKIRDAIDNQTEVTVQLIN-- 91 (332)
T ss_dssp CCGGGCCSEEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG-GGCCTTCCHHHHHHHHHHHHTTCCEEEEEEE--
T ss_pred hHhhcCCCcEEEecCCCCCCCEEEeehHHHHHhCCCHHHHcCCCch-hhcCCCCCHHHHHHHHHHHHcCCeeEEEEEE--
Confidence 467899999999999 9999999999999999999999999987 8888766665555666666666666666666
Q ss_pred eeeccCCcEEEEEEEEEEeecCCCCEEEEEEEeecchhhHHHHHHHHH
Q 002152 699 FELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIR 746 (959)
Q Consensus 699 ~~~~~dG~~~~v~v~~~pi~d~~g~~~gvv~v~~DITerk~~E~~L~~ 746 (959)
.+++|+.+|+.++..|++|.+|.+.|++++++|||++|+.+++++.
T Consensus 92 --~~~dG~~~~~~~~~~pi~d~~g~~~~~v~~~~DITe~k~~e~~~~~ 137 (332)
T 2wkq_A 92 --YTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVRDAAEREG 137 (332)
T ss_dssp --ECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEEESSCCCHHHHHHH
T ss_pred --EcCCCCEEEEeeEEEEeEcCCCCEEEEEEEeccCchhhhhhhhccc
Confidence 7899999999999999999999999999999999999988877643
No 80
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=99.25 E-value=2e-11 Score=113.09 Aligned_cols=112 Identities=14% Similarity=0.110 Sum_probs=96.0
Q ss_pred HHHHhcCccEEEEcCCCceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHHHHcC-CCcceEEEEEEeee
Q 002152 622 RLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG-EEDKNVELKLRKFE 700 (959)
Q Consensus 622 ~lie~~~~~I~~~D~dg~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~l~~-~~~~~~e~~~~~~~ 700 (959)
.++++++++++.+|.+|+++++|+++++++||++++++|+++. ++++|++...+...+...+.+ +.....++++
T Consensus 7 ~~~~~~~~~i~~~d~~g~i~~~N~~~~~~~G~~~~el~g~~~~-~~~~p~d~~~~~~~~~~~~~~~~~~~~~e~r~---- 81 (121)
T 2kdk_A 7 EINVKPTEFITRFAVNGKFVYVDQRATAILGYLPQELLGTSCY-EYFHQDDHNNLTDKHKAVLQSKEKILTDSYKF---- 81 (121)
T ss_dssp CCCCCSSEEEEEECTTSBEEEECTHHHHHTCCCTTTSBTSBTT-TTBCSSSHHHHHHHHHHHHTSSSCEEEEEEEE----
T ss_pred ccccCCccEEEEECCCeeEEEEChhHHHHHCCCHHHHcCCcHH-HeeCHHHHHHHHHHHHHHHhCCCCCccEEEEE----
Confidence 3567889999999999999999999999999999999999988 899999988887777777764 3334566666
Q ss_pred eccCCcEEEEEEEEEEeecCC-CCEEEEEEEeecchhhH
Q 002152 701 LQKQHSVVYILVNACTSRDYK-NNVKGVCFVGQDITHEK 738 (959)
Q Consensus 701 ~~~dG~~~~v~v~~~pi~d~~-g~~~gvv~v~~DITerk 738 (959)
.+++|+.+|+.++..|++|.. +.+.+++++.+||++.+
T Consensus 82 ~~~dG~~~~~~~~~~~~~d~~~~~~~~~v~~~~~i~~~~ 120 (121)
T 2kdk_A 82 RAKDGSFVTLKSQWFSFTNPDTKELEYIVSVNTLVLGHS 120 (121)
T ss_dssp ECSSSCEEEEEEEEEEEECCSSSCEEEEEEEEECCSSCC
T ss_pred EEcCCCEEEEEEEEEEEECCCCCeeeEEEEEEEeccccC
Confidence 789999999999999999875 56777899999998864
No 81
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=99.25 E-value=2.8e-11 Score=112.02 Aligned_cols=111 Identities=12% Similarity=0.045 Sum_probs=91.8
Q ss_pred HHHhcCCCCCCeeeeCCCCcEEeecHHHHHHhCCCchhhcCCCcccccccccccccChhhHHHHHHHHHhhhcC-CCcce
Q 002152 754 IIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITG-QGTEN 832 (959)
Q Consensus 754 i~e~~~~~i~~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l~~~~~~-~~~~~ 832 (959)
++++++. +++.+|.+|+++++|+++++++||++++++|+.+.. +.+|++...+...+.+.+.+ +....
T Consensus 8 ~~~~~~~---~i~~~d~~g~i~~~N~~~~~~~G~~~~el~g~~~~~--------~~~p~d~~~~~~~~~~~~~~~~~~~~ 76 (121)
T 2kdk_A 8 INVKPTE---FITRFAVNGKFVYVDQRATAILGYLPQELLGTSCYE--------YFHQDDHNNLTDKHKAVLQSKEKILT 76 (121)
T ss_dssp CCCCSSE---EEEEECTTSBEEEECTHHHHHTCCCTTTSBTSBTTT--------TBCSSSHHHHHHHHHHHHTSSSCEEE
T ss_pred cccCCcc---EEEEECCCeeEEEEChhHHHHHCCCHHHHcCCcHHH--------eeCHHHHHHHHHHHHHHHhCCCCCcc
Confidence 3445553 489999999999999999999999999999997543 55688887777777777764 44567
Q ss_pred eeEEEEccCCcEEEEEEEEeeeeCCC-CCEEEEEEEEeeccccc
Q 002152 833 FPFGFFNRQGQFVEVALTASRRTDAE-GKVIGCFCFMQILVPDL 875 (959)
Q Consensus 833 ~e~~~~~~dG~~~~v~~~~~pi~d~~-G~i~g~v~i~~DITerk 875 (959)
.++++++++|+.+|+..+..|++|.. +.+..++++.+|||+.+
T Consensus 77 ~e~r~~~~dG~~~~~~~~~~~~~d~~~~~~~~~v~~~~~i~~~~ 120 (121)
T 2kdk_A 77 DSYKFRAKDGSFVTLKSQWFSFTNPDTKELEYIVSVNTLVLGHS 120 (121)
T ss_dssp EEEEEECSSSCEEEEEEEEEEEECCSSSCEEEEEEEEECCSSCC
T ss_pred EEEEEEEcCCCEEEEEEEEEEEECCCCCeeeEEEEEEEeccccC
Confidence 89999999999999999999999886 56777899999999864
No 82
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=99.20 E-value=7.5e-12 Score=126.40 Aligned_cols=123 Identities=9% Similarity=0.090 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCeeeeC-CCCcEEeecHHHHHHhCCCchhhcCCCcccccccccccccChhhHHHHHHHHHh
Q 002152 745 IRLQGDYEAIIQSVNPLIPPIFASD-ENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQ 823 (959)
Q Consensus 745 ~~se~~l~~i~e~~~~~i~~I~~~D-~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l~~ 823 (959)
..++++|+.++++++. +++++| .+|+++++|+++++++|++ +++|+++.+ +++ +.....+...+.+
T Consensus 33 ~~~~~~l~~l~~~~~~---~i~~~d~~~g~i~~~N~a~~~l~G~~--~~~G~~~~~-~~~-------~~~~~~~~~~~~~ 99 (185)
T 3kx0_X 33 VGAAEDVRRIFEHIPA---ILVGLEGPDHRFVAVNAAYRGFSPLL--DTVGQPARE-VYP-------ELEGQQIYEMLDR 99 (185)
T ss_dssp TCCHHHHHHHHHHCSS---EEEEEETTTTEEEEECHHHHHHCCCC--SCTTSBHHH-HCT-------TSCSSSSHHHHHH
T ss_pred hhhHHHHHHHHhcCCc---eEEEEECCCcEEEEEcHHHHHHcCCc--cccCCcHHH-HCC-------chhhhhHHHHHHH
Confidence 3556789999999985 499999 9999999999999999999 899998653 332 2221122334555
Q ss_pred hhcCCCccee-eEEE--EccC--CcEEEEEEEEeeeeCCCCCEEEEEEEEeecccccHHHHH
Q 002152 824 GITGQGTENF-PFGF--FNRQ--GQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALE 880 (959)
Q Consensus 824 ~~~~~~~~~~-e~~~--~~~d--G~~~~v~~~~~pi~d~~G~i~g~v~i~~DITerk~~Ele 880 (959)
++..+..... ++.+ .+++ |..+|+.++..|+.+.+|.+.|++++++|||++|++|.+
T Consensus 100 ~~~~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~pi~~~~g~~~g~~~~~~DITerk~~e~~ 161 (185)
T 3kx0_X 100 VYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSIEGVQLIVDDVTSRVRARQA 161 (185)
T ss_dssp HHHHCCCEEEEEEEEC--------CCEEEEEEEEEEECTTSCEEEEEEEEEECHHHHTTCC-
T ss_pred HHHcCCcccccceeEEeeccCCCCccEEEEEEEEEEECCCCCEEEEEEEEEeCCHHHHHHHH
Confidence 5543334333 2333 2222 778999999999999999999999999999999988755
No 83
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=99.18 E-value=8.8e-11 Score=123.54 Aligned_cols=121 Identities=10% Similarity=0.120 Sum_probs=89.1
Q ss_pred HHHHHHHHHhcCCCCCCeeeeCCCCcEEeecHHHHHHh------------CCCchhhcCCCcccccccccccccChhhHH
Q 002152 748 QGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVT------------GWMRHEVIGKMLPREIFGNFCRMKGQDMLT 815 (959)
Q Consensus 748 e~~l~~i~e~~~~~i~~I~~~D~~g~i~~~N~a~~~l~------------G~~~eeviGk~~~~~i~~~~~~l~~~e~~~ 815 (959)
..+++.++++++. +++++|.+|+|+++|+++++++ ||++++++|+++.. ++. .++...
T Consensus 21 ~~~l~~iLd~~~~---~vii~D~~g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~eliG~~~~~-~~~------~~~~~~ 90 (233)
T 3vol_A 21 MARIKSALDNVSA---NVMIADNDLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDV-FHK------NPAHQR 90 (233)
T ss_dssp HHHHHHHHTTSSS---EEEEEETTSBEEEECHHHHHHHHHTHHHHHTTCTTCCTTSCTTCBGGG-GSS------SHHHHH
T ss_pred HHHHHHHHhcCCC---cEEEECCCCcEEEecHHHHHHHHHHHHHHHhhcCCCCHHHHcCCCHHH-HcC------CHHHHH
Confidence 3567788998874 5999999999999999999998 89999999998542 221 122221
Q ss_pred HHHHHHHhhhcCCCcceeeEEEEccCCcEEEEEEEEeeeeCCCCCEEEEEEEEeecccccHHHHHHHhHHHHHH
Q 002152 816 KFMILLYQGITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDI 889 (959)
Q Consensus 816 ~~~~~l~~~~~~~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~i~g~v~i~~DITerk~~Elelq~~ae~~~ 889 (959)
.+.+...+ .+..++. .+| .|+.++++|++|.+|++.|++++++|||++++.+.+++...+.+.
T Consensus 91 ----~~~~~~~~--~~~~~~~---~~g--~~~~~~~~Pi~d~~G~~~g~v~~~~DITe~~~~e~ei~~l~~a~~ 153 (233)
T 3vol_A 91 ----HLLANLTG--VHKAELN---LGG--RRFSLDVVPVFNDANERLGSAVQWTDRTEEHRAEQEVSQLVQAAA 153 (233)
T ss_dssp ----HHHHTCCS--CEEEEEE---ETT--EEEEEEEEEEECTTCCEEEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHhccc--ceeEEEE---ECC--EEEEEEEEEEECCCCCEEEEEEEEehhhHHHHHHHHHHHHHHHHh
Confidence 12222222 2333332 345 377899999999999999999999999999999988776665554
No 84
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens}
Probab=99.18 E-value=5.4e-10 Score=112.29 Aligned_cols=156 Identities=14% Similarity=0.124 Sum_probs=115.8
Q ss_pred HHHHHHHHHh-hcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCC-------CCCccCCccCCCC
Q 002152 214 KLAVSAISRL-QALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSD-------LEPYLGIHFPAND 285 (959)
Q Consensus 214 ~~~~~~~~~l-~~~~~~~l~~~~~~~v~~vr~~~g~DRv~iY~F~~d~~G~viaE~~~~~-------~~s~lg~~~pa~d 285 (959)
.++..+...+ .+ +.|++++++.+++.+++++|+||+.||-+++|+..-+..-..... .......++|...
T Consensus 13 ~~Ll~~~~~i~~~--~~dld~ll~~i~~~~~~~l~ad~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (189)
T 2zmf_A 13 DFLLDVSKTYFDN--IVAIDSLLEHIMIYAKNLVNADRCALFQVDHKNKELYSDLFDIGEEKEGKPVFKKTKEIRFSIEK 90 (189)
T ss_dssp HHHHHHHHHHHHC--SSCHHHHHHHHHHHHHHHHTEEEEEEEEEETTTTEEEEEEECCSCEETTEECCEECCCCEEETTS
T ss_pred HHHHHHHHHHHHc--cCCHHHHHHHHHHHHHHHhCCCEEEEEEEecCCcEEEEEEEecccccccccccccccccccCCCc
Confidence 3444555443 44 569999999999999999999999999999998766554332211 1122233444433
Q ss_pred chHHHHHHHHhCCEEEEecCCCCCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeE
Q 002152 286 IPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWG 365 (959)
Q Consensus 286 ip~~ar~ly~~~~~r~i~d~~~~~~~l~~~~~~~~~ldls~s~lRsvsp~h~~yl~nmgv~asl~v~i~~~~~~~~~LWG 365 (959)
.-....+..++...|+|+...|. .+.+......+++++.|++||+.+| ++||
T Consensus 91 --~~~~~v~~~~~~~~i~d~~~~~~----------------------~~~~~~~~~~~~~~s~l~vPl~~~~----~~~G 142 (189)
T 2zmf_A 91 --GIAGQVARTGEVLNIPDAYADPR----------------------FNREVDLYTGYTTRNILCMPIVSRG----SVIG 142 (189)
T ss_dssp --HHHHHHHHHCCCEEESCGGGSTT----------------------CCTHHHHHHCCCCCCEEEEEEEETT----EEEE
T ss_pred --cHHHHHHHhCCeEEEeccccccc----------------------ccccchhhcccccceEEEeeecccC----ceee
Confidence 12344577888888998775543 2445667888999999999999998 9999
Q ss_pred EEEeecC-CCCCCChhHHHHHHHHHHHHHHHHHHH
Q 002152 366 LVVCHHT-SPRYIPFPLRYACEFLVQAFSLQLYME 399 (959)
Q Consensus 366 Li~~hh~-~pr~~~~~~r~~~~~l~~~~s~~l~~~ 399 (959)
.|.++++ .|+.|+.+...+++.++.++++.|+.+
T Consensus 143 vl~l~~~~~~~~f~~~d~~ll~~lA~q~a~Ai~na 177 (189)
T 2zmf_A 143 VVQMVNKISGSAFSKTDENNFKMFAVFCALALHCA 177 (189)
T ss_dssp EEEEEEETTSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 9988766 489999999999999999999888644
No 85
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=99.18 E-value=7.4e-11 Score=107.98 Aligned_cols=111 Identities=8% Similarity=0.006 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHhcCccEEEEcCCCceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHHHHcCCCcceE
Q 002152 613 LSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNV 692 (959)
Q Consensus 613 L~~~~~~l~~lie~~~~~I~~~D~dg~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~ 692 (959)
+++..+.++.++++++++++++|.+|+|+++|+++++++||++++++|+++. ++.++..... +..+..+ ....+
T Consensus 8 ~e~~~~~~~~~~~~~~~~i~~~d~~g~i~~~N~~~~~l~G~~~~el~g~~~~-~~~~~~~~~~----~~~~~~~-~~~~~ 81 (118)
T 3olo_A 8 SELEFKFAHYLINNAVEASFCLGDNWQFLYVNDATCRMTEYSREQLLSMNLQ-DIDVDFALHD----WEEIRQK-NNYTF 81 (118)
T ss_dssp HHHHHHHHHHHHHHCSSEEEEECTTSBEEEECHHHHHHHCCCHHHHTTCBGG-GTBTTGGGSC----HHHHHHH-SEEEE
T ss_pred HHHHHHHHHHHHhcCCceEEEECCCCcEEEEHHHHHHHHCCCHHHHhCCChh-hcccccCHHH----HHHHHhc-CcEEE
Confidence 3445556788999999999999999999999999999999999999999987 7765543332 2222222 23344
Q ss_pred EEEEEeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEeecch
Q 002152 693 ELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735 (959)
Q Consensus 693 e~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~~~gvv~v~~DIT 735 (959)
+..+ .+++|..+|+.++..|+.+.+ ..+++++++|||
T Consensus 82 e~~~----~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~DIT 118 (118)
T 3olo_A 82 KTRY----RSQSGRIFLVEMSLTFLEDQE--RRFSCVFVREKS 118 (118)
T ss_dssp EEEE----ECTTCCEEEEEEEEEEEEETT--EEEEEEEEEEC-
T ss_pred EEEE----EccCCCEEEEEEEEEEEEECC--ccEEEEEEEeCC
Confidence 4444 688999999999999987643 335678999997
No 86
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=99.17 E-value=5.4e-11 Score=110.21 Aligned_cols=117 Identities=10% Similarity=0.143 Sum_probs=85.7
Q ss_pred HHHHHhcCCCCCCeeeeCCCCcEEeecHHHHHHhCCCchhhcCCCcccccccccccccChhhHHHHHHHHHhhhcCCCcc
Q 002152 752 EAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQGTE 831 (959)
Q Consensus 752 ~~i~e~~~~~i~~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l~~~~~~~~~~ 831 (959)
+.++++++. +++++|.+|+++++|+++++++|++.++++|+.+.+ +.++++...+...+.....++..
T Consensus 2 ~~l~~~~~~---~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~- 69 (126)
T 3mjq_A 2 KNFLETIED---MILIINREGRLLYANTAVPKKLGYTHEELMSMHILT--------ITSAGKMAEGEKILAELFAGKKE- 69 (126)
T ss_dssp CTTGGGCSS---EEEEEETTSBEEEECTHHHHHHSCCHHHHHHSBHHH--------HHCTTCHHHHHHHHHHHHHTCCS-
T ss_pred hhHHhhCCc---eEEEEeCCCcEEEEcHHHHHHHCCCHHHHcCCCHHH--------HcCchhHHHHHHHHHHHHhCCCc-
Confidence 456777764 599999999999999999999999999999987553 33355555666667777766644
Q ss_pred eeeEEEEccCCcEEEEEEEEeeeeCCCCCEEEEEEEEeecccccHHHHHHH
Q 002152 832 NFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQ 882 (959)
Q Consensus 832 ~~e~~~~~~dG~~~~v~~~~~pi~d~~G~i~g~v~i~~DITerk~~Elelq 882 (959)
..++++.+++|..+|+..+..|..+. ...+++++++|||++|+++.+.+
T Consensus 70 ~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~DITe~k~a~~~~~ 118 (126)
T 3mjq_A 70 SLPLSLEKKEGTSIPAKARIWQGKWH--NEPCLFAIIKDLSKEERASSPPF 118 (126)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEESS--SSEEEEEEEEECC----------
T ss_pred eeEEEEEccCCCEEEEEEEEEeeeEC--CceEEEEEEEechHHHHhhcccc
Confidence 77888899999999999999876653 35678999999999998886643
No 87
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=99.17 E-value=8.4e-12 Score=150.45 Aligned_cols=118 Identities=7% Similarity=-0.117 Sum_probs=98.6
Q ss_pred HHHHHHHHhcCCCCCCeeeeCCCCcEEeecHHHHHHhCCCchhhcCCCcccccccccccccChhhHHHHHHHHHhhhcCC
Q 002152 749 GDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQ 828 (959)
Q Consensus 749 ~~l~~i~e~~~~~i~~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l~~~~~~~ 828 (959)
.++..++++++. +|+++|.+|+|++||+++++++||+.++++|+.... ..++++...+......... +
T Consensus 518 ~~~~~lle~a~~---~i~~~D~~grI~~~N~a~~~l~G~s~~e~~g~~~l~--------~~~~~~~~~~~~i~~~l~~-g 585 (635)
T 4eho_A 518 PQASSQVHASMQ---PVLITDAEGRILLMNDSFRDMLPAGSPSAVHLDDLA--------GFFVESNDFLRNVAELIDH-G 585 (635)
T ss_dssp SSHHHHHHHCSS---CCEEEETTCCEEEECHHHHTTSCSSCCCCCSSGGGT--------TSSSSCTHHHHHHHHHHHH-C
T ss_pred HHHHHHHHhCCC---cEEEECCCCeEeeHHHHHHHHHCcChHHHcCcchhh--------ccCCCCHHHHHHHHHHHHc-C
Confidence 356778888764 599999999999999999999999999999987442 3445666555554444444 4
Q ss_pred CcceeeEEEEccCCcEEEEEEEEeeeeCCCCCEEEEEEEEeecccccHHH
Q 002152 829 GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPA 878 (959)
Q Consensus 829 ~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~i~g~v~i~~DITerk~~E 878 (959)
..+..|++++++||+.+|+.+++.|++|.+|+++|++++.+|||+||++|
T Consensus 586 ~~~~~E~~~~~~dG~~~~~~~~~~pv~d~~G~v~g~v~i~~DITerK~aE 635 (635)
T 4eho_A 586 RGWRGEVLLRGAGNRPLPLAVRADPVTRTEDQSLGFVLIFSDATDRRTAD 635 (635)
T ss_dssp CCBCCCCEECCSSSSCEECCCCEEEECSTTSSCCEEEECCCCCSSSCCCC
T ss_pred CcEEEEEEEEccCCcEEEEEEEEEEEECCCCCEEEEEEEEEeCchHhhCC
Confidence 57888999999999999999999999999999999999999999999764
No 88
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=99.16 E-value=1.9e-10 Score=120.94 Aligned_cols=150 Identities=13% Similarity=0.068 Sum_probs=90.3
Q ss_pred HHHHHHHHHhcCccEEEEcCCCceehhcHHHHHHh------------CCCcccccCCCccccccCCCchHHHHHHHHHHH
Q 002152 617 ACEMVRLIETATAPIFGVDSSGTINGWNAKVAELT------------GLPASEAMGKSLIDEVVHEESQGAVENLICRAL 684 (959)
Q Consensus 617 ~~~l~~lie~~~~~I~~~D~dg~iv~~N~~~~~l~------------G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~l 684 (959)
..++..++++++++++++|.+|+|+++|+++++++ ||++++++|+++. .+.+. .......+.. +
T Consensus 21 ~~~l~~iLd~~~~~vii~D~~g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~eliG~~~~-~~~~~--~~~~~~~~~~-~ 96 (233)
T 3vol_A 21 MARIKSALDNVSANVMIADNDLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANID-VFHKN--PAHQRHLLAN-L 96 (233)
T ss_dssp HHHHHHHHTTSSSEEEEEETTSBEEEECHHHHHHHHHTHHHHHTTCTTCCTTSCTTCBGG-GGSSS--HHHHHHHHHT-C
T ss_pred HHHHHHHHhcCCCcEEEECCCCcEEEecHHHHHHHHHHHHHHHhhcCCCCHHHHcCCCHH-HHcCC--HHHHHHHHHh-c
Confidence 35678899999999999999999999999999998 8999999999986 55543 1212222221 1
Q ss_pred cCCCcceEEEEEEeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEeecchhhHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 002152 685 LGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPP 764 (959)
Q Consensus 685 ~~~~~~~~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~~~gvv~v~~DITerk~~E~~L~~se~~l~~i~e~~~~~i~~ 764 (959)
. .. .+..+ ..+| .|+.++..|++|.+|++.|++++++|||+++++|+++....+ .+..
T Consensus 97 ~--~~--~~~~~-----~~~g--~~~~~~~~Pi~d~~G~~~g~v~~~~DITe~~~~e~ei~~l~~-------a~~~---- 154 (233)
T 3vol_A 97 T--GV--HKAEL-----NLGG--RRFSLDVVPVFNDANERLGSAVQWTDRTEEHRAEQEVSQLVQ-------AAAA---- 154 (233)
T ss_dssp C--SC--EEEEE-----EETT--EEEEEEEEEEECTTCCEEEEEEEEEECHHHHHHHHHHHHHHH-------HHHC----
T ss_pred c--cc--eeEEE-----EECC--EEEEEEEEEEECCCCCEEEEEEEEehhhHHHHHHHHHHHHHH-------HHhC----
Confidence 1 12 22222 1234 478999999999999999999999999999999887754433 2211
Q ss_pred eeeeCCCCcEE-eecHHHHHHhCCCchhhcCC
Q 002152 765 IFASDENACCS-EWNAAMEKVTGWMRHEVIGK 795 (959)
Q Consensus 765 I~~~D~~g~i~-~~N~a~~~l~G~~~eeviGk 795 (959)
-|.++++. ..|..+...+|+...++++.
T Consensus 155 ---gdl~~ri~~~~~~~~~~~l~~~ln~l~~~ 183 (233)
T 3vol_A 155 ---GDFSKRVEEAGKEGFFLRLAKDLNSLVDT 183 (233)
T ss_dssp ---C----------------------------
T ss_pred ---CcccccccccccchHHHHHHHHHHHHHHH
Confidence 14466665 56777777777777776665
No 89
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=99.10 E-value=2.4e-10 Score=104.47 Aligned_cols=112 Identities=14% Similarity=0.056 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCeeeeCCCCcEEeecHHHHHHhCCCchhhcCCCcccccccccccccChhhHHHHHHHHH
Q 002152 743 KFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLY 822 (959)
Q Consensus 743 ~L~~se~~l~~i~e~~~~~i~~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l~ 822 (959)
++++..+.++.++++++. +++++|.+|+++++|+++++++||++++++|+++.+ +++.. .++. ...+
T Consensus 7 ~~e~~~~~~~~~~~~~~~---~i~~~d~~g~i~~~N~~~~~l~G~~~~el~g~~~~~-~~~~~----~~~~----~~~~- 73 (118)
T 3olo_A 7 QSELEFKFAHYLINNAVE---ASFCLGDNWQFLYVNDATCRMTEYSREQLLSMNLQD-IDVDF----ALHD----WEEI- 73 (118)
T ss_dssp CHHHHHHHHHHHHHHCSS---EEEEECTTSBEEEECHHHHHHHCCCHHHHTTCBGGG-TBTTG----GGSC----HHHH-
T ss_pred HHHHHHHHHHHHHhcCCc---eEEEECCCCcEEEEHHHHHHHHCCCHHHHhCCChhh-ccccc----CHHH----HHHH-
Confidence 344455667889999875 499999999999999999999999999999998653 22211 1111 1111
Q ss_pred hhhcCCCcceeeEEEEccCCcEEEEEEEEeeeeCCCCCEEEEEEEEeecc
Q 002152 823 QGITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILV 872 (959)
Q Consensus 823 ~~~~~~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~i~g~v~i~~DIT 872 (959)
. .+....++.++.+++|+.+|+.++..|+.+.++ .+++++++|||
T Consensus 74 --~-~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~DIT 118 (118)
T 3olo_A 74 --R-QKNNYTFKTRYRSQSGRIFLVEMSLTFLEDQER--RFSCVFVREKS 118 (118)
T ss_dssp --H-HHSEEEEEEEEECTTCCEEEEEEEEEEEEETTE--EEEEEEEEEC-
T ss_pred --H-hcCcEEEEEEEEccCCCEEEEEEEEEEEEECCc--cEEEEEEEeCC
Confidence 1 233567888899999999999999999876543 35678999997
No 90
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=99.09 E-value=7.8e-10 Score=98.29 Aligned_cols=104 Identities=13% Similarity=0.232 Sum_probs=83.4
Q ss_pred CeeeeCC---CCcEEeecHHHHHHhCCCchhhcCCCc-ccccccccccccChhhHHHHHHHHHhhhcCCCcceeeEEEEc
Q 002152 764 PIFASDE---NACCSEWNAAMEKVTGWMRHEVIGKML-PREIFGNFCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFN 839 (959)
Q Consensus 764 ~I~~~D~---~g~i~~~N~a~~~l~G~~~eeviGk~~-~~~i~~~~~~l~~~e~~~~~~~~l~~~~~~~~~~~~e~~~~~ 839 (959)
+++++|. +|+++++|+++++++|++.++++|+.. ...+. +++....+...+.+.+.++..+..++.+.+
T Consensus 3 ~i~i~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (110)
T 1byw_A 3 KFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLH-------GPCTQRRAAAQIAQALLGAEERKVEIAFYR 75 (110)
T ss_dssp EEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGC-------CTTCCHHHHHHHHHHHHTTCCEEEEEEEEC
T ss_pred CEEEEeccCCCCcEEEECHHHHHHhCCCHHHHccCCCcccccc-------CCcCCHHHHHHHHHHHhcCCCceEEEEEEc
Confidence 5788886 599999999999999999999999972 33222 223333334445555666667788888899
Q ss_pred cCCcEEEEEEEEeeeeCCCCCEEEEEEEEeecccc
Q 002152 840 RQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPD 874 (959)
Q Consensus 840 ~dG~~~~v~~~~~pi~d~~G~i~g~v~i~~DITer 874 (959)
++|+.+|+..+..|+.+.+|.+.+++++++|||++
T Consensus 76 ~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DiTe~ 110 (110)
T 1byw_A 76 KDGSCFLCLVDVVPVKNEDGAVIMFILNFEVVMEK 110 (110)
T ss_dssp TTSCEEEEEEEEEEEECTTCCEEEEEEEEEEEEEC
T ss_pred CCCCEEEEEEEEEEeecCCCCEEEEEEEEEeccCC
Confidence 99999999999999999999999999999999975
No 91
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=99.09 E-value=7.6e-10 Score=103.19 Aligned_cols=114 Identities=20% Similarity=0.259 Sum_probs=92.8
Q ss_pred HHHHHHhcCccEEEEcC---CCceehhcHHHHHHhCCCcccccCCCc-cccccCCCchHHHHHHHHHHHcCCCcceEEEE
Q 002152 620 MVRLIETATAPIFGVDS---SGTINGWNAKVAELTGLPASEAMGKSL-IDEVVHEESQGAVENLICRALLGEEDKNVELK 695 (959)
Q Consensus 620 l~~lie~~~~~I~~~D~---dg~iv~~N~~~~~l~G~~~eeliGk~~-~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~ 695 (959)
+...+++++.+++++|. +|+|+++|+++++++|++.++++|+++ ...+.+++........+...+..+.....++.
T Consensus 21 ~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (138)
T 2l0w_A 21 IIRKFEGQSRKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIAQALLGAEERKVEIA 100 (138)
T ss_dssp HHHHHTTTTSEEEEEESSSTTCBEEEECSHHHHHHSCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHTTCSSCEEEEEE
T ss_pred HHHHHhcCCCCEEEEecCCCCCEEEEeCHHHHHHhCCCHHHHcCCCCcccccCCcccchhHHHHHHHHHhhcCCceeEEE
Confidence 45667889999999999 999999999999999999999999983 42555555555555556666665555555555
Q ss_pred EEeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEeecchhh
Q 002152 696 LRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHE 737 (959)
Q Consensus 696 ~~~~~~~~dG~~~~v~v~~~pi~d~~g~~~gvv~v~~DITer 737 (959)
. .+++|..+|+.++..|+.+.+|.+.+++++++|||++
T Consensus 101 ~----~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~ 138 (138)
T 2l0w_A 101 F----YRKDGSCFLCLVDVVPVKNEDGAVIMFILNFEVVMEK 138 (138)
T ss_dssp E----ECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEEEEEC
T ss_pred E----ECCCCCEEEEEEEEEEEeCCCCCEEEEEEEEEeccCC
Confidence 4 5789999999999999999999999999999999974
No 92
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens}
Probab=99.08 E-value=3.3e-09 Score=104.32 Aligned_cols=157 Identities=15% Similarity=0.145 Sum_probs=119.2
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCCccCCccCCCCchHHHHHHHHhC
Q 002152 218 SAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQN 297 (959)
Q Consensus 218 ~~~~~l~~~~~~~l~~~~~~~v~~vr~~~g~DRv~iY~F~~d~~G~viaE~~~~~~~s~lg~~~pa~dip~~ar~ly~~~ 297 (959)
++...+.+ +.+++++++.+++.+++++|+||+.||-++++...-.+.-+..+.-....+..||-.+-..-....+..+
T Consensus 6 ~i~~~l~~--~~~~~~~l~~~~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (169)
T 3oov_A 6 QISSRIQK--SIDVDEVLRLCAEGLHDVLGYERVNILMADTARTSLSFVAAVGTADFNPAGVVLPLDQRGGVITKCFTDR 83 (169)
T ss_dssp CHHHHHHH--CCCHHHHHHHHHHHHHHTTCCSEEEEEEECTTSSEEEEEEEESCSSCCCTTCEEESSGGGHHHHHHHHHT
T ss_pred HHHHHHhh--hcCHHHHHHHHHHHHHHhhCCceEEEEEEeCCCCeEEEEEEeCchhhhhhcccCCcccccchHHHHHhcC
Confidence 34455555 6799999999999999999999999999999876655555555444445566777544455666778888
Q ss_pred CEEEEecCCCCCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEeecCCC-CC
Q 002152 298 RVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSP-RY 376 (959)
Q Consensus 298 ~~r~i~d~~~~~~~l~~~~~~~~~ldls~s~lRsvsp~h~~yl~nmgv~asl~v~i~~~~~~~~~LWGLi~~hh~~p-r~ 376 (959)
+..+|+|+...|-..-+.+ ..+++...++++.+++||+.+| +++|+|.+++..+ +.
T Consensus 84 ~~~~i~d~~~~~~~~~~~~-------------------~~~~~~~~~~~s~l~vPl~~~~----~~iGvl~~~~~~~~~~ 140 (169)
T 3oov_A 84 QVYMIDDVSAYPTDFRLQS-------------------PYDAIRALRSKSFVICPIVVKG----EAIGVFAVDNRSSRRS 140 (169)
T ss_dssp CCEEESCGGGSCGGGSCCT-------------------TGGGCGGGCCSSEEEEEEEETT----EEEEEEEEECTTSSSC
T ss_pred CCEEeccccchhhhhhccc-------------------cHHHHHhcCcCcEEEEEEEeCC----cEEEEEEEEccccCCC
Confidence 9889998776543111000 0234677899999999999998 9999999999875 55
Q ss_pred CChhHHHHHHHHHHHHHHHHHHH
Q 002152 377 IPFPLRYACEFLVQAFSLQLYME 399 (959)
Q Consensus 377 ~~~~~r~~~~~l~~~~s~~l~~~ 399 (959)
|+.+....++.++.+++..|+..
T Consensus 141 f~~~d~~~l~~~a~~~a~ai~na 163 (169)
T 3oov_A 141 LNDTDVDTIKLFADQASSAIVRI 163 (169)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888643
No 93
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=99.07 E-value=1.4e-09 Score=101.31 Aligned_cols=112 Identities=13% Similarity=0.221 Sum_probs=89.9
Q ss_pred HHHHhcCCCCCCeeeeCC---CCcEEeecHHHHHHhCCCchhhcCCCc-ccccccccccccChhhHHHHHHHHHhhhcCC
Q 002152 753 AIIQSVNPLIPPIFASDE---NACCSEWNAAMEKVTGWMRHEVIGKML-PREIFGNFCRMKGQDMLTKFMILLYQGITGQ 828 (959)
Q Consensus 753 ~i~e~~~~~i~~I~~~D~---~g~i~~~N~a~~~l~G~~~eeviGk~~-~~~i~~~~~~l~~~e~~~~~~~~l~~~~~~~ 828 (959)
..+++++. +++++|. +|+++++|+++++++|++.++++|+.+ ...+. +++....+...+.+.+..+
T Consensus 23 ~~~~~~~~---~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 92 (138)
T 2l0w_A 23 RKFEGQSR---KFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLH-------GPRTQRRAAAQIAQALLGA 92 (138)
T ss_dssp HHHTTTTS---EEEEEESSSTTCBEEEECSHHHHHHSCCHHHHTTSBTTCGGGC-------CTTCCHHHHHHHHHHTTCS
T ss_pred HHHhcCCC---CEEEEecCCCCCEEEEeCHHHHHHhCCCHHHHcCCCCcccccC-------CcccchhHHHHHHHHHhhc
Confidence 34455654 5999999 999999999999999999999999973 33222 2333333445566666666
Q ss_pred CcceeeEEEEccCCcEEEEEEEEeeeeCCCCCEEEEEEEEeecccc
Q 002152 829 GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPD 874 (959)
Q Consensus 829 ~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~i~g~v~i~~DITer 874 (959)
..+..++...+++|..+|+.++..|+.+.+|.+.+++++++|||++
T Consensus 93 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~ 138 (138)
T 2l0w_A 93 EERKVEIAFYRKDGSCFLCLVDVVPVKNEDGAVIMFILNFEVVMEK 138 (138)
T ss_dssp SCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEEEEEC
T ss_pred CCceeEEEEECCCCCEEEEEEEEEEEeCCCCCEEEEEEEEEeccCC
Confidence 6778888889999999999999999999999999999999999974
No 94
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=99.07 E-value=7.2e-11 Score=109.46 Aligned_cols=108 Identities=16% Similarity=0.114 Sum_probs=76.6
Q ss_pred HHHHHHHHHHhcCccEEEEcCCCceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHHHHcCCCcceEEEE
Q 002152 616 VACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELK 695 (959)
Q Consensus 616 ~~~~l~~lie~~~~~I~~~D~dg~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~ 695 (959)
.+++++.++++++++++++|.+|+|+++|+++++++|++.++++|+++. ++++++...............+... .
T Consensus 17 ~~~~~~~i~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~ 91 (125)
T 3fc7_A 17 TRKKFESLVSDSPDGIVHLTTNGTILSVNPSMAGRLGADPDTLVGQQLS-AVMDSEAANQRLEAGKSAVENGTAT----R 91 (125)
T ss_dssp ---------CCSCCEEEEEETTSBEEEECHHHHHHHTSCHHHHTTSBGG-GSSCHHHHHHHHHHHHHHHHHTSCE----E
T ss_pred HHHHHHHHHhcCCCeEEEEcCCCeEEEECHHHHHHhCCCHHHHcCccHH-HhCCHHHHHHHHHHHHHHhcCCCeE----E
Confidence 6778999999999999999999999999999999999999999999998 7775444444444444554444321 1
Q ss_pred EEeeeeccCCc-EEEEEEEEEEeecCCCCEEEEEEEeecch
Q 002152 696 LRKFELQKQHS-VVYILVNACTSRDYKNNVKGVCFVGQDIT 735 (959)
Q Consensus 696 ~~~~~~~~dG~-~~~v~v~~~pi~d~~g~~~gvv~v~~DIT 735 (959)
. .+|. .+|+.++..|+.+. |...|++++++|||
T Consensus 92 ~------~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~DIT 125 (125)
T 3fc7_A 92 S------EDAVGGRHYHNQYIPVDSH-RKSDTFQLVSRDIT 125 (125)
T ss_dssp E------EEEETTEEEEEEEEESSTT-TTTTEEEEEEEECC
T ss_pred e------EcCCCcEEEEEEEEeEecC-CCeEEEEEEEecCC
Confidence 1 2344 68999999998765 56678899999998
No 95
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls}
Probab=99.06 E-value=5.6e-09 Score=103.82 Aligned_cols=160 Identities=12% Similarity=0.070 Sum_probs=114.4
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEE-EecCCCC-CCccCCccCCCCchHHH
Q 002152 213 QKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVS-EIRRSDL-EPYLGIHFPANDIPQAA 290 (959)
Q Consensus 213 ~~~~~~~~~~l~~~~~~~l~~~~~~~v~~vr~~~g~DRv~iY~F~~d~~G~via-E~~~~~~-~s~lg~~~pa~dip~~a 290 (959)
.+++.++...|.+ +.|++++++.+++.+++++|+||+.||-+++++..-.+. ....... ....+..+|..+=+ +
T Consensus 5 l~ll~~i~~~l~~--~~d~~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 80 (177)
T 3k2n_A 5 LKLMQYIGDAIGT--IRDPQELFRTVTDKLRLLFAFDSAVIITIDRERREASVFFEMLRFELPEQLRHQTRSIAGTW--L 80 (177)
T ss_dssp HHHHHHHHHHHTT--CCSHHHHHHHHHHHHTTTCCCSEEEEEEEETTTTEEEEEEEECSSCCCSTTCCSEEECTTSG--G
T ss_pred HHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCeEEeEEecccCCCCchhhcccCCccccH--H
Confidence 4566677778887 779999999999999999999999999999988765553 2211121 12223334432211 1
Q ss_pred HHHHHhCCEEEEecCCC-CCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEe
Q 002152 291 RFLFKQNRVRMICDCHA-IPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVC 369 (959)
Q Consensus 291 r~ly~~~~~r~i~d~~~-~~~~l~~~~~~~~~ldls~s~lRsvsp~h~~yl~nmgv~asl~v~i~~~~~~~~~LWGLi~~ 369 (959)
...+..+.+.++ |+.. .+. .+. ..++..+.+...|+++.|++||+.+| +++|.|.+
T Consensus 81 ~~v~~~~~~~~~-d~~~~~~~--~~~----------------~~~~~~~~~~~~~~~s~l~vPL~~~~----~~iGvL~l 137 (177)
T 3k2n_A 81 EGHLDDRTVTVA-SIARDIPS--FGA----------------DGAPLLWTLHELGMRQIVLSPLRSGG----RVIGFLSF 137 (177)
T ss_dssp GGGTTCCSCEEE-ETTTTCTT--TTT----------------TTCHHHHHHHHHTCCEEEEEEEEETT----EEEEEEEE
T ss_pred HHHhccCCceEe-chhhcccc--cCC----------------cchhHHHHHHHcCceEEEEEEEEECC----EEEEEEEE
Confidence 233445566555 6544 211 000 01234466889999999999999998 99999999
Q ss_pred ecCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 002152 370 HHTSPRYIPFPLRYACEFLVQAFSLQLYME 399 (959)
Q Consensus 370 hh~~pr~~~~~~r~~~~~l~~~~s~~l~~~ 399 (959)
+++.|+.|+.+....++.++.++++.|+.+
T Consensus 138 ~~~~~~~f~~~d~~ll~~lA~~~a~Ai~na 167 (177)
T 3k2n_A 138 VSAEEKLWSDGDKSLLSGVSSSIAIAVSNA 167 (177)
T ss_dssp EESSCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988654
No 96
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii}
Probab=99.06 E-value=5.5e-09 Score=102.97 Aligned_cols=158 Identities=11% Similarity=0.062 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCCccCCccCCCCchHHH
Q 002152 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAA 290 (959)
Q Consensus 211 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~v~~vr~~~g~DRv~iY~F~~d~~G~viaE~~~~~~~s~lg~~~pa~dip~~a 290 (959)
+.++.+.++...+.+ +.+++++++.+++.+.+++|+|++.||-+++++..-++.-+...+-+..-...+|..+ .-.
T Consensus 5 ~~L~~L~~i~~~l~~--~~~~~~~l~~~~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~~~--~~~ 80 (171)
T 3trc_A 5 NMLKILRQITQEVNA--APNLEQALKLVVVRLCEALPADACSLFICDDVHGEYVLMATQGLNSKQVGKLRLKFGE--GLI 80 (171)
T ss_dssp HHHHHHHHHHHHHHH--CSSHHHHHHHHHHHHHHHTTCSEEEEEEEETTTTEEEEEEEESSCGGGTTTCEEETTC--HHH
T ss_pred HHHHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHhCCcEEEEEEEECCCCeEEEEEecCCCccccccEeecCCC--Chh
Confidence 445566677777877 6799999999999999999999999999999875444443332222222233555444 234
Q ss_pred HHHHHhCCEEEEecCCCCCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEee
Q 002152 291 RFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCH 370 (959)
Q Consensus 291 r~ly~~~~~r~i~d~~~~~~~l~~~~~~~~~ldls~s~lRsvsp~h~~yl~nmgv~asl~v~i~~~~~~~~~LWGLi~~h 370 (959)
...+..++.-+++|+...|-... .| .+...++++.+++||+.+| +++|.|.+.
T Consensus 81 ~~~~~~~~~~~~~d~~~~~~~~~-------------------~~----~~~~~~~~s~l~vPl~~~~----~~~Gvl~~~ 133 (171)
T 3trc_A 81 GLVGEREEPINLADAPLHPAYKH-------------------RP----ELGEEDYHGFLGIPIIEQG----ELLGILVIQ 133 (171)
T ss_dssp HHHHHHTSCEEESCGGGSTTCCC-------------------CG----GGCCCCCCEEEEEEEEETT----EEEEEEEEE
T ss_pred hHHHhcCCeEEeCCCCCCCcccc-------------------cc----cCCcccccEEEEEeEEECC----EEEEEEEEe
Confidence 55677788888888765332100 01 1245789999999999998 999999999
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 002152 371 HTSPRYIPFPLRYACEFLVQAFSLQLYME 399 (959)
Q Consensus 371 h~~pr~~~~~~r~~~~~l~~~~s~~l~~~ 399 (959)
+..|+.|+.+....++.++.+++..|+..
T Consensus 134 ~~~~~~f~~~d~~~l~~la~~~a~ai~~a 162 (171)
T 3trc_A 134 QLESHHFAEEEEAFCVTLAIHLAAEIAHA 162 (171)
T ss_dssp ESSSCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888643
No 97
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=99.03 E-value=3.8e-10 Score=110.05 Aligned_cols=123 Identities=15% Similarity=0.107 Sum_probs=89.9
Q ss_pred HHHHHHHHhcCccEEEEcCCCceehhcHH---HHHHhCCCcccccCCCccccccCCCchHHHHHHHHHHHcCCCcceEEE
Q 002152 618 CEMVRLIETATAPIFGVDSSGTINGWNAK---VAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVEL 694 (959)
Q Consensus 618 ~~l~~lie~~~~~I~~~D~dg~iv~~N~~---~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~ 694 (959)
+++..++++++++|+++|.+|+|+++|++ ++++|| ..++++|+++. ++.++...+.+...+..... +.....++
T Consensus 19 ~~l~~IL~~~~~gI~~vD~~g~I~~~N~a~~~~~~i~g-~~~~~iGr~v~-~~~~~~~~~~v~~i~~~l~~-g~~~~~~~ 95 (151)
T 2qkp_A 19 EQANLILNHLPLEITFVNKDDIFQYYNDSVPAAEMVFK-RTPSQVGRNVE-LCHPPKVLDKVKKVFELLRN-GQRDKVNM 95 (151)
T ss_dssp HHHHHHHHHSSSEEEEEETTSBEEEECCCSCGGGCSSC-CCGGGTTSBGG-GSSCHHHHHHHHHHHHHHHT-TSBSEEEE
T ss_pred HHHHHHHHhCCCceEEEcCCCeEEEEeCCCchhhhhcC-CCHHHcCCCHH-HhCCHHHHHHHHHHHHHHHc-CCccEEEE
Confidence 45789999999999999999999999999 999999 56789999998 76654443334444443333 44434444
Q ss_pred EEEeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEeecchhhHHHHHHHHHHH
Q 002152 695 KLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQ 748 (959)
Q Consensus 695 ~~~~~~~~~dG~~~~v~v~~~pi~d~~g~~~gvv~v~~DITerk~~E~~L~~se 748 (959)
.+ ...+...++.++..|++|.+|+++|++.+++|||+.++.+++.++-+
T Consensus 96 ~~-----~~~~~~~~v~v~~~Pi~d~~G~~~G~vev~~Dit~l~~le~~r~~~~ 144 (151)
T 2qkp_A 96 WF-----QSERLGKFVYVTYAAVRDQAGDFQGVLEYVQDIKPFFELDSEFNRDE 144 (151)
T ss_dssp EE-----EETTTTEEEEEEEEEEECTTCCEEEEEEEEEECGGGGGGGGC-----
T ss_pred EE-----ecCCCCeEEEEEEEEEECCCCCEEEEEEEEEECHHHHhhhhhhhccc
Confidence 33 11221256789999999999999999999999999998887755443
No 98
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP}
Probab=99.03 E-value=1.4e-08 Score=99.49 Aligned_cols=155 Identities=10% Similarity=0.045 Sum_probs=112.8
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCCccCCccCCCCchHHHHH
Q 002152 213 QKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARF 292 (959)
Q Consensus 213 ~~~~~~~~~~l~~~~~~~l~~~~~~~v~~vr~~~g~DRv~iY~F~~d~~G~viaE~~~~~~~s~lg~~~pa~dip~~ar~ 292 (959)
+..+..+...+.+ +.+++++++.+++.+.+++|+|++.||-++++...-++.-+...+-...-+..+|..+ + -...
T Consensus 9 l~~l~~~~~~l~~--~~~~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~-~-~~~~ 84 (171)
T 3ci6_A 9 LDTLRRIVQEINS--SVSLHDSLDIMVNQVADAMKVDVCSIYLLDERNQRYLLMASKGLNPESVGHVSLQLSE-G-LVGL 84 (171)
T ss_dssp HHHHHHHHHHHHT--CSSHHHHHHHHHHHHHHHHTCSEEEEEEEETTTTEEEEEEEESSCGGGTTTCEEETTS-H-HHHH
T ss_pred HHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhCCCeEEEEEEeCCCCEEEEEeccCCCcccccceeeeccC-C-eehh
Confidence 4455667777777 6799999999999999999999999999999865544444433332223344555432 2 4556
Q ss_pred HHHhCCEEEEecCCCCCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEeecC
Q 002152 293 LFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHT 372 (959)
Q Consensus 293 ly~~~~~r~i~d~~~~~~~l~~~~~~~~~ldls~s~lRsvsp~h~~yl~nmgv~asl~v~i~~~~~~~~~LWGLi~~hh~ 372 (959)
.+..++..+++|+...|- ..+...+...|+++.+++||+.+| +++|.|.+.+.
T Consensus 85 ~~~~~~~~~~~d~~~~~~-----------------------~~~~~~~~~~~~~s~l~vPl~~~~----~~~Gvl~l~~~ 137 (171)
T 3ci6_A 85 VGQREEIVNLENASKHER-----------------------FAYLPETGEEIYNSFLGVPVMYRR----KVMGVLVVQNK 137 (171)
T ss_dssp HHHHTSCEEESSGGGSTT-----------------------C---------CCCEEEEEEEEETT----EEEEEEEEEES
T ss_pred hhccCceEEecCCCcCcc-----------------------hhccccccccccceEEEEeEEECC----EEEEEEEEecC
Confidence 677788888888654332 011112366789999999999988 99999999999
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHH
Q 002152 373 SPRYIPFPLRYACEFLVQAFSLQLYM 398 (959)
Q Consensus 373 ~pr~~~~~~r~~~~~l~~~~s~~l~~ 398 (959)
.++.|+...+..++.++.+++..|+.
T Consensus 138 ~~~~f~~~~~~~l~~la~~~a~al~~ 163 (171)
T 3ci6_A 138 QPQDFSEAAESFLVTLCAQLSGVIAH 163 (171)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888864
No 99
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=99.03 E-value=1.9e-09 Score=95.71 Aligned_cols=105 Identities=20% Similarity=0.230 Sum_probs=82.9
Q ss_pred ccEEEEcC---CCceehhcHHHHHHhCCCcccccCCC-ccccccCCCchHHHHHHHHHHHcCCCcceEEEEEEeeeeccC
Q 002152 629 APIFGVDS---SGTINGWNAKVAELTGLPASEAMGKS-LIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQ 704 (959)
Q Consensus 629 ~~I~~~D~---dg~iv~~N~~~~~l~G~~~eeliGk~-~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~~~~~~~~~d 704 (959)
.+++++|. +|+|+++|+++++++|++.++++|++ +...+.+++........+...+..+.....++.+ .+++
T Consensus 2 ~~i~i~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 77 (110)
T 1byw_A 2 RKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALLGAEERKVEIAF----YRKD 77 (110)
T ss_dssp CEEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEE----ECTT
T ss_pred CCEEEEeccCCCCcEEEECHHHHHHhCCCHHHHccCCCccccccCCcCCHHHHHHHHHHHhcCCCceEEEEE----EcCC
Confidence 57888886 59999999999999999999999998 3424444444444444555555555555555555 6789
Q ss_pred CcEEEEEEEEEEeecCCCCEEEEEEEeecchhh
Q 002152 705 HSVVYILVNACTSRDYKNNVKGVCFVGQDITHE 737 (959)
Q Consensus 705 G~~~~v~v~~~pi~d~~g~~~gvv~v~~DITer 737 (959)
|..+|+.++..|+.+.+|.+.+++++++|||++
T Consensus 78 g~~~~~~~~~~~~~~~~g~~~~~~~~~~DiTe~ 110 (110)
T 1byw_A 78 GSCFLCLVDVVPVKNEDGAVIMFILNFEVVMEK 110 (110)
T ss_dssp SCEEEEEEEEEEEECTTCCEEEEEEEEEEEEEC
T ss_pred CCEEEEEEEEEEeecCCCCEEEEEEEEEeccCC
Confidence 999999999999999999999999999999975
No 100
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens}
Probab=99.03 E-value=5.6e-09 Score=103.84 Aligned_cols=151 Identities=10% Similarity=0.021 Sum_probs=108.9
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCCccCCccCCCCchHHHHHHHH
Q 002152 216 AVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFK 295 (959)
Q Consensus 216 ~~~~~~~l~~~~~~~l~~~~~~~v~~vr~~~g~DRv~iY~F~~d~~G~viaE~~~~~~~s~lg~~~pa~dip~~ar~ly~ 295 (959)
+..+...+.+ +.+++++++.+++.+.+++|+|++.||.+++++. .+.+ ....+-+..-+..+|..+= -....+.
T Consensus 17 l~~i~~~l~~--~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~-~~~~-~~g~~~~~~~~~~~~~~~~--~~~~~~~ 90 (181)
T 3e0y_A 17 LEEISMLVSS--DFDLPEVLQHVTAKVATQLKVSVCNIYLREGDEV-VLAA-THGFDPAFIGKIRIKIGDG--ITGSVAR 90 (181)
T ss_dssp HHHHHHHHST--TSCHHHHHHHHHHHHHHHTTCSCEEEEEEETTEE-EEEE-EESSCGGGTTTCEEETTTS--SHHHHHH
T ss_pred HHHHHHHHhh--cCCHHHHHHHHHHHHHHHhCCCeEEEEEEcCCCc-eEEE-ecCCCHHHhccccccCCCC--eeeehhh
Confidence 3455666766 6799999999999999999999999999999877 4433 3322222223334444322 1345567
Q ss_pred hCCEEEEecCCCCCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEeecCCCC
Q 002152 296 QNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPR 375 (959)
Q Consensus 296 ~~~~r~i~d~~~~~~~l~~~~~~~~~ldls~s~lRsvsp~h~~yl~nmgv~asl~v~i~~~~~~~~~LWGLi~~hh~~pr 375 (959)
.+...+|+|+...|-. .+...+...|+++.+++||+.+| +++|.|.+++..|+
T Consensus 91 ~~~~~~i~d~~~~~~~-----------------------~~~~~~~~~~~~s~l~vPl~~~~----~~iGvl~~~~~~~~ 143 (181)
T 3e0y_A 91 DGQYISLSRASQDPRY-----------------------RYFPELQEEKYNSMLSFPIGDKK----EVYGVINLNTTSIR 143 (181)
T ss_dssp HCCCEEEEEECCCCCC--------------------------------CEEEEEEEEEECSS----CEEEEEEEEESSCC
T ss_pred cCCeEEecCcccCccc-----------------------cccccccccCcceEEEEEEEeCC----eEEEEEEEeeCCCC
Confidence 7888888987764431 11122456799999999999888 99999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHH
Q 002152 376 YIPFPLRYACEFLVQAFSLQLYME 399 (959)
Q Consensus 376 ~~~~~~r~~~~~l~~~~s~~l~~~ 399 (959)
.|+.+....++.++.+++..|...
T Consensus 144 ~f~~~~~~~l~~la~~~a~al~~~ 167 (181)
T 3e0y_A 144 SFHEDEIYFVSIIANLILTAIKLR 167 (181)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888643
No 101
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca}
Probab=99.01 E-value=3.5e-09 Score=105.97 Aligned_cols=143 Identities=13% Similarity=0.059 Sum_probs=109.0
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCCccCCccCCCCchHHHHHHHHhCCEEEEecCCC
Q 002152 228 GGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHA 307 (959)
Q Consensus 228 ~~~l~~~~~~~v~~vr~~~g~DRv~iY~F~~d~~G~viaE~~~~~~~s~lg~~~pa~dip~~ar~ly~~~~~r~i~d~~~ 307 (959)
+.+++++++.+++.+.+++|+|++.||.+++++.-.+++-.-.+.-..--....|..+ ..+...+..+...+++|+..
T Consensus 15 ~~~~~~~l~~i~~~~~~~~~~~~~~i~l~~~~~~l~~~a~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~d~~~ 92 (181)
T 2qyb_A 15 TLDLQIIMDDLLNLLLKEFKLDLAVIRLVDEKGVLRVRSYSGKGIAGIAGKDWEPEIE--TYIGEAFLSNRLQFVNDTQY 92 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCSEEEEEEECTTSCEEEEEEEESCTTSTTCSCBCCCTT--SHHHHHHHHTSCEEESCGGG
T ss_pred ccCHHHHHHHHHHHHHHHhCCcEEEEEEECCCCCEEEEEEeCCCcceecccccccCCC--CchhhhhhcCCCEEecChhc
Confidence 4589999999999999999999999999966555555554432221100112333122 24556677888888988764
Q ss_pred CCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCc-eeEEEEeec-CCCCCCChhHHHHH
Q 002152 308 IPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMK-LWGLVVCHH-TSPRYIPFPLRYAC 385 (959)
Q Consensus 308 ~~~~l~~~~~~~~~ldls~s~lRsvsp~h~~yl~nmgv~asl~v~i~~~~~~~~~-LWGLi~~hh-~~pr~~~~~~r~~~ 385 (959)
.| .+...+++...|+++.+++||..+| + +||.|.+++ ..|+.++.+...++
T Consensus 93 ~~-----------------------~~~~~~~~~~~g~~s~~~vPl~~~~----~~~~GvL~l~~~~~~~~f~~~d~~lL 145 (181)
T 2qyb_A 93 MT-----------------------KPLTRELMQKEGIKSFAHIPISRKG----EPPFGILSVFSRTIVGLFNEPFLNLL 145 (181)
T ss_dssp CS-----------------------CHHHHHHHHHTTCCEEEEEEECCTT----SCCCEEEEEEESSCSSCCCHHHHHHH
T ss_pred CC-----------------------chhhHHHHHhcCcceEEEEEEEeCC----CeEEEEEEEecCCCCCCCCHHHHHHH
Confidence 33 2557778889999999999999887 8 999999999 67999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 002152 386 EFLVQAFSLQLYME 399 (959)
Q Consensus 386 ~~l~~~~s~~l~~~ 399 (959)
+.++.+++..|+..
T Consensus 146 ~~la~~~a~al~~a 159 (181)
T 2qyb_A 146 ESLAGQLAQAVKIV 159 (181)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998754
No 102
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=98.99 E-value=8.7e-10 Score=104.46 Aligned_cols=110 Identities=17% Similarity=0.194 Sum_probs=81.0
Q ss_pred HHHHHHHHhcCccEEEEcCCCceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHHHHcCCC-------cc
Q 002152 618 CEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEE-------DK 690 (959)
Q Consensus 618 ~~l~~lie~~~~~I~~~D~dg~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~l~~~~-------~~ 690 (959)
+.+..++++++++|+++|.+|+|+++|+++++++||+.++++|+++. +++++++.......+......+. ..
T Consensus 7 ~~l~~i~~~~~d~i~~~D~~g~I~~~N~aa~~l~G~~~~el~G~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (129)
T 3mfx_A 7 ETIELFIQHLTEAMILVNANGFIRSCNQRSAELLDCPQVSLKGQDWR-NFLTEHHQARYDNLLSHDVQLGTNCGQPVQHP 85 (129)
T ss_dssp HHHHHHHTTCSSEEEEEETTSBEEEECHHHHHHTTSCHHHHTTSBGG-GGBCTTCCGGGGCTTC----------CCSCEE
T ss_pred HHHHHHHhcCCceEEEECCCCEEEeEhHHHHHHHCcCHHHHcCCcHH-HHcChHhHHHHHHHHHHHHhcCcccccccCCC
Confidence 45788999999999999999999999999999999999999999998 88887765543333332222211 11
Q ss_pred eEEEEEEeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEeecch
Q 002152 691 NVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735 (959)
Q Consensus 691 ~~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~~~gvv~v~~DIT 735 (959)
..++.+ .++||+.+|+.++..|+.+ +..+ ++++++|..
T Consensus 86 ~~E~~~----~rkdG~~~~velsis~i~~--~~~~-~v~~~~~~~ 123 (129)
T 3mfx_A 86 AQETTL----ICASGKAKDVELSISYIPG--HEPM-FVMVMHDLE 123 (129)
T ss_dssp EEEEEE----ECTTSCEEEEEEEEEEECS--SSCE-EEEEEEEC-
T ss_pred ceEEEE----EcCCCCEEEEEEEEEEecC--CCcE-EEEEEechh
Confidence 234444 7899999999999999983 3333 366777764
No 103
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=98.98 E-value=7.1e-08 Score=109.65 Aligned_cols=323 Identities=12% Similarity=0.096 Sum_probs=186.3
Q ss_pred HHHHHHHHHhhcCCCCCHHH----HHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCCccCCccCCCCchHH
Q 002152 214 KLAVSAISRLQALPGGDIGL----LCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQA 289 (959)
Q Consensus 214 ~~~~~~~~~l~~~~~~~l~~----~~~~~v~~vr~~~g~DRv~iY~F~~d~~G~viaE~~~~~~~s~lg~~~pa~dip~~ 289 (959)
+.+.+++..+. +.+++. +++.+++.+++++|+|++.||.++++.. +....+....-....+.++|... --
T Consensus 9 ~~l~~~~~~l~---~~~l~~~l~~~l~~i~~~~~~~~~a~~~~i~l~d~~~~-~l~~~~~~g~~~~~~~~~~~~~~--g~ 82 (398)
T 1ykd_A 9 QIVHQTLSMLD---SHGFENILQEMLQSITLKTGELLGADRTTIFLLDEEKQ-ELWSIVAAGEGDRSLEIRIPADK--GI 82 (398)
T ss_dssp HHHHHHHHHHT---TSCHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEETTTT-EEEEEEECCGGGCCCCCEEETTS--HH
T ss_pred HHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHhCCceEEEEEEECCCC-eEEEEeecCCCCccceeecCCCC--ch
Confidence 33444455553 346666 4555666699999999999999999865 33333322211234466777552 23
Q ss_pred HHHHHHhCCEEEEecCCCCCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEE-cCCCCCceeEEEE
Q 002152 290 ARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVII-NSKDSMKLWGLVV 368 (959)
Q Consensus 290 ar~ly~~~~~r~i~d~~~~~~~l~~~~~~~~~ldls~s~lRsvsp~h~~yl~nmgv~asl~v~i~~-~~~~~~~LWGLi~ 368 (959)
+...+..+..-.|+|+...+. |..-+.+.......++++.|++||+. +| ++||.|.
T Consensus 83 ~g~v~~~~~~v~i~d~~~~~~-------------------~~~~~~~~~~~~~~~~~s~l~vPl~~~~g----~~iGvl~ 139 (398)
T 1ykd_A 83 AGEVATFKQVVNIPFDFYHDP-------------------RSIFAQKQEKITGYRTYTMLALPLLSEQG----RLVAVVQ 139 (398)
T ss_dssp HHHHHHHCCCEEECSCGGGSG-------------------GGHHHHHHHHHHCCCCSCEEEEEEECSSC----CEEEEEE
T ss_pred hhhhhccCcEEeccchhcccc-------------------hhhcccccCcccCcCCceEEEEEEECCCC----CEEEEEE
Confidence 445577788888888764311 00013344455578899999999996 57 9999999
Q ss_pred eecC---------------CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhc-ccCCcccc
Q 002152 369 CHHT---------------SPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE-KNILRTQVLLCDMLL-RDAPFSIV 431 (959)
Q Consensus 369 ~hh~---------------~pr~~~~~~r~~~~~l~~~~s~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~ 431 (959)
+++. .++.|+.+....++.++.+++..|+.....+...++ ++..........+.. ......+.
T Consensus 140 l~~~~~~~~~~~~~l~~~~~~~~f~~~d~~~l~~~a~~~~~al~~~~l~~~~~~~~~~l~~L~~~~~~l~~~~~dl~~~l 219 (398)
T 1ykd_A 140 LLNKLKPYSPPDALLAERIDNQGFTSADEQLFQEFAPSIRLILESSRSFYIATQKQRAAAAMMKAVKSLSQSSLDLEDTL 219 (398)
T ss_dssp EEEEBCSCCCTTCCHHHHBCTTCCCHHHHHHGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred EeccCCcccccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 9998 789999999999999999999988754322211111 111122222222222 11222222
Q ss_pred -cCCchhhhhccCCeEEEEEC----CeEEEecC----------CCCHHHHHHHHHHHHhccCCCceeec-ccccccCCCC
Q 002152 432 -TQSPSIMDLVKCDGAALYYG----GRCWLVGV----------TPTESQLKDIAWWLLNNHGDCTGLST-DSLAEAGYPG 495 (959)
Q Consensus 432 -~~~~~l~~l~~a~g~a~~~~----~~~~~~G~----------~p~~~~~~~l~~wl~~~~~~~~~~~t-~~l~~~~~p~ 495 (959)
.-...+..+++|++++|+.- +..+.... .|.. ..++.|..... . .++.. |.-.+-.|..
T Consensus 220 ~~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~-~-~~~i~~d~~~~~~~~~ 294 (398)
T 1ykd_A 220 KRVMDEAKELMNADRSTLWLIDRDRHELWTKITQDNGSTKELRVPIG---KGFAGIVAASG-Q-KLNIPFDLYDHPDSAT 294 (398)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEETTTTEEEEEEECSSSCEEEEEEETT---SHHHHHHHHHC-C-CEEECSCGGGSTTCHH
T ss_pred HHHHHHHHHHhCcCeEEEEEEECCCCEEEEEEecCCCceeeeeccCC---CchhhHHhccC-C-eEEeccccccCcccCc
Confidence 22345677889998887652 23332211 1111 24555655442 2 23333 3222111111
Q ss_pred c----cccccccceEEEEEecC-CC----eEEEeecccceEEeecCCCCCCCcCCCCCcccCCchHHHHHHhhcccccCC
Q 002152 496 A----ALLGQAVCGMATARITS-KD----FLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPW 566 (959)
Q Consensus 496 ~----~~~~~~~~g~l~~~i~~-~~----~l~~fR~e~~~~v~W~G~p~~~~~~~~g~~l~PR~SF~~w~e~V~~~s~pW 566 (959)
. ...+-....++++||.. ++ .+..++... .| -.|+.+++.|.+...+...+|
T Consensus 295 ~~~~~~~~~~~~~s~l~vPl~~~~~~~iGvl~l~~~~~-----------------~~--~~~~~~~~~~~~~~~~~~~~f 355 (398)
T 1ykd_A 295 AKQIDQQNGYRTCSLLCMPVFNGDQELIGVTQLVNKKK-----------------TG--EFPPYNPETWPIAPECFQASF 355 (398)
T ss_dssp HHHHHHHHTCCCCCEEEEEEECSSSCEEEEEEEEEECC-----------------SS--CCCCCCGGGTTCCCGGGCCCC
T ss_pred ccchhhhcCCeeeeEEEEeeecCCCCEEEEEEEEecCC-----------------cc--cccccccccccccccccCCCC
Confidence 1 00112356789999862 32 122221110 01 124556678988888888899
Q ss_pred ccchHHHHHHHHHHHHHHHHHHH
Q 002152 567 EVSEINAIHSLQIVMRDSFQEME 589 (959)
Q Consensus 567 ~~~el~aa~~L~~iL~~~l~~i~ 589 (959)
+..++..+..+...+.-++....
T Consensus 356 ~~~d~~ll~~la~~~a~al~na~ 378 (398)
T 1ykd_A 356 DRNDEEFMEAFNIQAGVALQNAQ 378 (398)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988777776666554
No 104
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=98.98 E-value=3.6e-09 Score=98.50 Aligned_cols=105 Identities=17% Similarity=0.171 Sum_probs=77.9
Q ss_pred HHHHHHHHhcCccEEEEcCCCceehhcHHHHHHhC------------CCcccccCCCccccccCCCchHHHHHHHHHHHc
Q 002152 618 CEMVRLIETATAPIFGVDSSGTINGWNAKVAELTG------------LPASEAMGKSLIDEVVHEESQGAVENLICRALL 685 (959)
Q Consensus 618 ~~l~~lie~~~~~I~~~D~dg~iv~~N~~~~~l~G------------~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~l~ 685 (959)
.+++.++++++++++++|.+|+|+++|+++++++| ++.++++|+++. ++.+.. ......+.. ..
T Consensus 5 ~rl~~il~~~~~gviv~D~~g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~~~~-~~~~~~--~~~~~~~~~-~~ 80 (121)
T 4hi4_A 5 ARIASALDNVSANVMIADNDLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANID-VFHKNP--AHQRHLLAN-LT 80 (121)
T ss_dssp HHHHHHHTTSSSEEEEEETTCBEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTCBGG-GGCSSH--HHHHHHHHH-CS
T ss_pred HHHHHHHhcCCccEEEEcCCCeEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCCCHH-HhcCCH--HHHHHHHhC-cC
Confidence 56899999999999999999999999999999996 899999999987 665432 212222222 11
Q ss_pred CCCcceEEEEEEeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEeecchhh
Q 002152 686 GEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHE 737 (959)
Q Consensus 686 ~~~~~~~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~~~gvv~v~~DITer 737 (959)
... +..+. .+|. ++.++..|++|.+|++.|++++++|||++
T Consensus 81 --~~~--~~~~~-----~~~~--~~~~~~~pi~~~~g~~~g~v~~~~DiTee 121 (121)
T 4hi4_A 81 --GVH--KAELN-----LGGR--RFSLDVVPVFNDANARLGSAVQWTDRTEE 121 (121)
T ss_dssp --SCE--EEEEE-----ETTE--EEEEEEEEEECTTSCEEEEEEEEEECC--
T ss_pred --CCc--EEEEE-----ECCE--EEEEEEEEEECCCCCEEEEEEEEEEecCC
Confidence 222 22221 1343 56889999999999999999999999984
No 105
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=98.98 E-value=1.4e-09 Score=100.17 Aligned_cols=94 Identities=20% Similarity=0.180 Sum_probs=71.2
Q ss_pred HHHHhcCccEEEEcCCCceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHHHHcCCCcceEEEEEEeeee
Q 002152 622 RLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFEL 701 (959)
Q Consensus 622 ~lie~~~~~I~~~D~dg~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~~~~~~~ 701 (959)
.++++++++|+++|.+|+|+++|+++++++||+++|++|+++. +++||++.+.+...+. ........++++ .
T Consensus 3 ~lle~~~d~i~v~d~~G~i~yvn~~~~~~lGy~~~el~G~~~~-~~ihp~D~~~~~~~~~---~~~~~~~~e~r~----~ 74 (111)
T 2vlg_A 3 FPLQTKTDIHAVLASNGRIIYISANSKLHLGYLQGEMIGSFLK-TFLHEEDQFLVESYFY---NEHHLMPCTFRF----I 74 (111)
T ss_dssp ------CCEEEEECTTSBEEEECTTHHHHHSCCHHHHTTSBGG-GGBCGGGHHHHHHHHH---CSCCSSCEEEEE----E
T ss_pred chhhcCCCEEEEEcCCCeEEEEChHHHHHhCCCHHHHcCCcHH-HeECHhHHHHHHHHHh---ccCCCccEEEEE----E
Confidence 4789999999999999999999999999999999999999998 9999999887765543 233334566776 7
Q ss_pred ccCCcEEEEEEEEEEeecCCCC
Q 002152 702 QKQHSVVYILVNACTSRDYKNN 723 (959)
Q Consensus 702 ~~dG~~~~v~v~~~pi~d~~g~ 723 (959)
++||+.+|+.++..++++..+.
T Consensus 75 ~kdG~~~wve~~~~~v~~~~~~ 96 (111)
T 2vlg_A 75 KKDHTIVWVEAAVEIVTTRAER 96 (111)
T ss_dssp CTTSCEEEEEEEEEEC------
T ss_pred cCCCCEEEEEEEEEEEecccCC
Confidence 8999999999999999886553
No 106
>2e4s_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; GAF domain, structural genomics, NPPSFA; HET: MSE CMP; 2.10A {Homo sapiens} PDB: 2zmf_A*
Probab=98.97 E-value=8.3e-09 Score=103.68 Aligned_cols=158 Identities=13% Similarity=0.107 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEe-cCC-----CC-CCccCCccCC
Q 002152 212 SQKLAVSAISRLQALPG-GDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEI-RRS-----DL-EPYLGIHFPA 283 (959)
Q Consensus 212 ~~~~~~~~~~~l~~~~~-~~l~~~~~~~v~~vr~~~g~DRv~iY~F~~d~~G~viaE~-~~~-----~~-~s~lg~~~pa 283 (959)
....+.++...+.+ + .|++++++.+++.+++++|+|++.||-++++...-++.-. ... .+ +...+.++|.
T Consensus 11 ~~~~L~~~~~~l~~--~~~d~~~~l~~i~~~~~~~~~a~~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (189)
T 2e4s_A 11 LNDFLLDVSKTYFD--NIVAIDSLLEHIMIYAKNLVNADRCALFQVDHKNKELYSDLFDIGEEKEGKPVFKKTKEIRFSI 88 (189)
T ss_dssp HHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHTEEEEEEEEEETTTTEEEEEEEEEEEEETTEEEEEECCCCEEET
T ss_pred HHHHHHHHHHHHHh--cccCHHHHHHHHHHHHHHHhCCCeEEEEEEECCCCEEEEEEeccCccccccccccCCcceEeeC
Confidence 34455566666655 4 4999999999999999999999999999998654332211 110 01 1244556664
Q ss_pred CCchHHHHHHHHhCCEEEEecCCCCCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCce
Q 002152 284 NDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKL 363 (959)
Q Consensus 284 ~dip~~ar~ly~~~~~r~i~d~~~~~~~l~~~~~~~~~ldls~s~lRsvsp~h~~yl~nmgv~asl~v~i~~~~~~~~~L 363 (959)
.. .-+...+..+...+|+|+...|- .+.+.......++++.|++||+.+| ++
T Consensus 89 ~~--~~~~~v~~~~~~~~i~d~~~~~~----------------------~~~~~~~~~~~~~~s~l~vPl~~~~----~~ 140 (189)
T 2e4s_A 89 EK--GIAGQVARTGEVLNIPDAYADPR----------------------FNREVDLYTGYTTRNILCMPIVSRG----SV 140 (189)
T ss_dssp TS--HHHHHHHHHCCCEEESCGGGSTT----------------------CCTHHHHHHCCCCCCEEEEEEEETT----EE
T ss_pred CC--cHHHHHHHhCCEEEecCCCcCcc----------------------cChhhccccCCccceEEEEEeccCC----eE
Confidence 42 33556677888888988765432 1234556778999999999999988 99
Q ss_pred eEEEEeecCCCC-CCChhHHHHHHHHHHHHHHHHHHH
Q 002152 364 WGLVVCHHTSPR-YIPFPLRYACEFLVQAFSLQLYME 399 (959)
Q Consensus 364 WGLi~~hh~~pr-~~~~~~r~~~~~l~~~~s~~l~~~ 399 (959)
+|.|.+++..++ .|+.+...+++.++.++++.|+.+
T Consensus 141 iGvl~l~~~~~~~~f~~~d~~ll~~la~~~a~ai~na 177 (189)
T 2e4s_A 141 IGVVQMVNKISGSAFSKTDENNFKMFAVFCALALHCA 177 (189)
T ss_dssp EEEEEEEEETTSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999866 899999999999999999988654
No 107
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.97 E-value=6.2e-10 Score=124.99 Aligned_cols=109 Identities=8% Similarity=0.024 Sum_probs=98.1
Q ss_pred CccEEEEcCCCceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHHHHcCCCcceEEEEEEeeeeccCCcE
Q 002152 628 TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSV 707 (959)
Q Consensus 628 ~~~I~~~D~dg~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~~~~~~~~~dG~~ 707 (959)
...++..|.+|+++++|+++..++||+++|++|+++. +++||++.+.+...+..++..+.....++++ ++++|.+
T Consensus 251 ~~f~~~~~~dg~~~~vn~~~~~ilGY~~eEl~g~~~~-~~iHpdD~~~~~~~~~~~l~~g~~~~~eyR~----~~kdG~~ 325 (361)
T 4f3l_A 251 EEFTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGY-DYYHVDDLENLAKCHEHLMQYGKGKSCYYRF----LTKGQQW 325 (361)
T ss_dssp CEEEEEECTTSBEEEECTTSHHHHCCCHHHHTTSBGG-GGBCHHHHHHHHHHHHHHHHHSEEECCCEEE----ECTTSEE
T ss_pred ceeEEEEcCCceEEEECChhhhhhCcCHHHHcCCCHH-HeECHHHHHHHHHHHHHHHhCCCcceEEEEE----EecCCCE
Confidence 4567788999999999999999999999999999998 9999999998888888888766666667777 7899999
Q ss_pred EEEEEEEEEeecC-CCCEEEEEEEeecchhhHHHH
Q 002152 708 VYILVNACTSRDY-KNNVKGVCFVGQDITHEKVLM 741 (959)
Q Consensus 708 ~~v~v~~~pi~d~-~g~~~gvv~v~~DITerk~~E 741 (959)
+|+..++.+++|. +|++.+++++.+|||+++..+
T Consensus 326 vWv~~~~~~v~~~~~g~~~~iv~~~~dITe~~~~~ 360 (361)
T 4f3l_A 326 IWLQTHYYITYHQWNSRPEFIVCTHTVVSYAEVRA 360 (361)
T ss_dssp EEEEEEEEEEECTTTCCEEEEEEEEEECCHHHHHH
T ss_pred EEEEEEEEEEEcCCCCCeeEEEEEEEECChhHhhc
Confidence 9999999999998 899999999999999998654
No 108
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=98.97 E-value=2.5e-09 Score=102.70 Aligned_cols=122 Identities=15% Similarity=0.047 Sum_probs=90.3
Q ss_pred EEeecchhhHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeeC---CCCcEEeecHHHHHHhCCCchhhcCCCccccccccc
Q 002152 729 FVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASD---ENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNF 805 (959)
Q Consensus 729 ~v~~DITerk~~E~~L~~se~~l~~i~e~~~~~i~~I~~~D---~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~ 805 (959)
++..||+.++..+. +..++++. ++++++| .+|+|+++|+++++++||+.++++|+.+.. ++
T Consensus 14 ~~~~~~~~r~~~~~--------~~~~~~~~----~~i~~~d~~d~~g~i~~~N~a~~~l~G~~~~el~g~~~~~-l~--- 77 (149)
T 3d72_A 14 GYLIQIMNRPNPQV--------ELGPVDTS----VALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRF-LQ--- 77 (149)
T ss_dssp HHHHHHHHCSSCSS--------CCCSCCTT----SCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGG-GG---
T ss_pred eeeehhhhCcchhH--------HHHhhcCC----ccEEEEeccCCCCcEEEECHHHHHHHCcCHHHHcCCChhH-hC---
Confidence 34456666553321 22345553 3689988 799999999999999999999999998642 22
Q ss_pred ccccChhh-----------HHHHHHHHHhhhcCCCcceeeEEEEccCCcEEEEEEEEeeeeCCCCCEEEEEEEEee
Q 002152 806 CRMKGQDM-----------LTKFMILLYQGITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQI 870 (959)
Q Consensus 806 ~~l~~~e~-----------~~~~~~~l~~~~~~~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~i~g~v~i~~D 870 (959)
++++ .......+.+.+..+..+..++++.+++|+.+|+.++..|+++.+|.+.+++++.+|
T Consensus 78 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~~~~g~~~~~v~~~~D 149 (149)
T 3d72_A 78 ----SPDGMVKPKSTRKYVDSNTINTMRKAIDRNAEVQVEVVNFKKNGQRFVNFLTMIPVRDETGEYRYSMGFQCE 149 (149)
T ss_dssp ----STTSCCCTTCCCSSSCHHHHHHHHHHHHHTCCEEEEEEEECTTCCEEEEEEEEEEEECTTSSEEEEEEECCC
T ss_pred ----CccccccccccccccChHHHHHHHHHHHCCCceEEEEEEECCCCCEEEEEEEEEEEEcCCCCEEEEEEEEeC
Confidence 2221 223334455555555577888889999999999999999999999999999998876
No 109
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.97 E-value=9.6e-10 Score=124.51 Aligned_cols=108 Identities=12% Similarity=0.071 Sum_probs=93.9
Q ss_pred cCccEEEEcCCCceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHHHHcCCC-cceEEEEEEeeeeccCC
Q 002152 627 ATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEE-DKNVELKLRKFELQKQH 705 (959)
Q Consensus 627 ~~~~I~~~D~dg~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~l~~~~-~~~~e~~~~~~~~~~dG 705 (959)
..+.++..|.+|+++++|+++..++||+++|++|+++. +++||++.+.+...+..++.++. ....++++ +++||
T Consensus 277 ~~~fi~~~~~dg~~~~vn~~~~~ilGY~~eEl~g~~~~-~~iHpdD~~~~~~~~~~~l~~~~~~~~~eyR~----~~kdG 351 (387)
T 4f3l_B 277 SMEYVSRHAIDGKFVFVDQRATAILAYLPQELLGTSCY-EYFHQDDIGHLAECHRQVLQTREKITTNCYKF----KIKDG 351 (387)
T ss_dssp CCEEEEEECTTSBEEEECTHHHHHHCCCHHHHTTSBGG-GTBCHHHHHHHHHHHHHHTTCSSCEECCCEEE----ECTTS
T ss_pred CceEEEEECCCCEEEEECCCcccccCCCHHHHcCCcHH-HeeCHHHHHHHHHHHHHHHhcCCCeeeEEEEE----EccCC
Confidence 45678889999999999999999999999999999999 99999999999988888886543 34567887 78999
Q ss_pred cEEEEEEEEEEeecC-CCCEEEEEEEeecchhhHH
Q 002152 706 SVVYILVNACTSRDY-KNNVKGVCFVGQDITHEKV 739 (959)
Q Consensus 706 ~~~~v~v~~~pi~d~-~g~~~gvv~v~~DITerk~ 739 (959)
.++|+..++.+++|. +|++.+++++.+|||+||.
T Consensus 352 ~~vWv~~~~~~~~~~~~g~~~~ivg~~~dIT~Rk~ 386 (387)
T 4f3l_B 352 SFITLRSRWFSFMNPWTKEVEYIVSTNTVVLANVL 386 (387)
T ss_dssp CEEEEEEEEEEEEETTTTEEEEEEEEEEECC----
T ss_pred CEEEEEEEEEEEECCCCCCEEEEEEEEEEcchhhc
Confidence 999999999999987 7899999999999999974
No 110
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=98.96 E-value=2.3e-10 Score=106.16 Aligned_cols=113 Identities=16% Similarity=0.129 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHhcCccEEEEcCCCceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHHHHcCCCcce
Q 002152 612 ELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKN 691 (959)
Q Consensus 612 eL~~~~~~l~~lie~~~~~I~~~D~dg~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~ 691 (959)
.+....+..+.++++++++++++|.+|+|+++|+++++++|++.++++|+++. +++++.....+...+..++..+....
T Consensus 6 ~~~~~~~~~~~il~~~~~~i~~~D~~g~i~~~N~a~~~l~g~~~~e~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (118)
T 3fg8_A 6 HHHHHSSGRENLYFQGGLGFMALDEDLRIIYVNSGCLRHVRRSRDELLGRVVT-EVLPETQGSYFDALCRKVLATGREQQ 84 (118)
T ss_dssp -------CCCCSSSCTTCEEEEECTTCBEEEECHHHHHHHTCCHHHHTTSBHH-HHCGGGTTSHHHHHHHHHHHHCCCEE
T ss_pred ccccccchHHHHHhhCCceEEEECCCCeEEEECHHHHHHhCCCHHHHcCCcHH-HHcCccchHHHHHHHHHHHHcCCceE
Confidence 34555566788899999999999999999999999999999999999999998 88876665566666777766555444
Q ss_pred EEEEEEeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEeecchhh
Q 002152 692 VELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHE 737 (959)
Q Consensus 692 ~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~~~gvv~v~~DITer 737 (959)
.+++. ...+| .|+.++..|+.+ |++++++|||++
T Consensus 85 ~~~~~----~~~~g--~~~~~~~~p~~~------g~v~~~~DITer 118 (118)
T 3fg8_A 85 TRVDS----LYSPG--MTIEVTAAADSG------ALVVHFRDVTAE 118 (118)
T ss_dssp EEEEC----SSSTT--CEEEEEEEEETT------EEEEEEEECSCC
T ss_pred EEEEE----EcCCC--eEEEEEEEEcCC------cEEEEEEeccCC
Confidence 42222 22245 578888888754 368889999985
No 111
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=98.95 E-value=2.4e-09 Score=98.43 Aligned_cols=95 Identities=15% Similarity=0.132 Sum_probs=69.4
Q ss_pred HHHHhcCCCCCCeeeeCCCCcEEeecHHHHHHhCCCchhhcCCCcccccccccccccChhhHHHHHHHHHhhhcCCCcce
Q 002152 753 AIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQGTEN 832 (959)
Q Consensus 753 ~i~e~~~~~i~~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l~~~~~~~~~~~ 832 (959)
.++++++.+ |+++|.+|+++|+|+++++++||+++|++|+.+.+ +.||++.+.+...+.+ ......
T Consensus 3 ~lle~~~d~---i~v~d~~G~i~yvn~~~~~~lGy~~~el~G~~~~~--------~ihp~D~~~~~~~~~~---~~~~~~ 68 (111)
T 2vlg_A 3 FPLQTKTDI---HAVLASNGRIIYISANSKLHLGYLQGEMIGSFLKT--------FLHEEDQFLVESYFYN---EHHLMP 68 (111)
T ss_dssp ------CCE---EEEECTTSBEEEECTTHHHHHSCCHHHHTTSBGGG--------GBCGGGHHHHHHHHHC---SCCSSC
T ss_pred chhhcCCCE---EEEEcCCCeEEEEChHHHHHhCCCHHHHcCCcHHH--------eECHhHHHHHHHHHhc---cCCCcc
Confidence 466777654 99999999999999999999999999999997553 6789998877665542 233456
Q ss_pred eeEEEEccCCcEEEEEEEEeeeeCCCCCE
Q 002152 833 FPFGFFNRQGQFVEVALTASRRTDAEGKV 861 (959)
Q Consensus 833 ~e~~~~~~dG~~~~v~~~~~pi~d~~G~i 861 (959)
.+++++++||+++|+..++.++.+..+.-
T Consensus 69 ~e~r~~~kdG~~~wve~~~~~v~~~~~~~ 97 (111)
T 2vlg_A 69 CTFRFIKKDHTIVWVEAAVEIVTTRAERT 97 (111)
T ss_dssp EEEEEECTTSCEEEEEEEEEEC-------
T ss_pred EEEEEEcCCCCEEEEEEEEEEEecccCCc
Confidence 78899999999999999999998875543
No 112
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=98.94 E-value=2.7e-09 Score=102.48 Aligned_cols=105 Identities=13% Similarity=0.121 Sum_probs=83.8
Q ss_pred HHHhcCccEEEEc---CCCceehhcHHHHHHhCCCcccccCCCccccccCCCc-----------hHHHHHHHHHHHcCCC
Q 002152 623 LIETATAPIFGVD---SSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEES-----------QGAVENLICRALLGEE 688 (959)
Q Consensus 623 lie~~~~~I~~~D---~dg~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~-----------~~~~~~~l~~~l~~~~ 688 (959)
++++. ++++++| .+|+|+++|+++++++||+.++++|+++. .+.+++. .......+...+..+.
T Consensus 31 ~~~~~-~~i~~~d~~d~~g~i~~~N~a~~~l~G~~~~el~g~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (149)
T 3d72_A 31 PVDTS-VALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCR-FLQSPDGMVKPKSTRKYVDSNTINTMRKAIDRNA 108 (149)
T ss_dssp SCCTT-SCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG-GGGSTTSCCCTTCCCSSSCHHHHHHHHHHHHHTC
T ss_pred hhcCC-ccEEEEeccCCCCcEEEECHHHHHHHCcCHHHHcCCChh-HhCCccccccccccccccChHHHHHHHHHHHCCC
Confidence 45554 8999999 79999999999999999999999999987 7777762 3333334444444444
Q ss_pred cceEEEEEEeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEeec
Q 002152 689 DKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQD 733 (959)
Q Consensus 689 ~~~~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~~~gvv~v~~D 733 (959)
....++.+ .+++|+.+|+.++..|+++.+|.+.+++++++|
T Consensus 109 ~~~~e~~~----~~~dG~~~~~~~~~~~i~~~~g~~~~~v~~~~D 149 (149)
T 3d72_A 109 EVQVEVVN----FKKNGQRFVNFLTMIPVRDETGEYRYSMGFQCE 149 (149)
T ss_dssp CEEEEEEE----ECTTCCEEEEEEEEEEEECTTSSEEEEEEECCC
T ss_pred ceEEEEEE----ECCCCCEEEEEEEEEEEEcCCCCEEEEEEEEeC
Confidence 55555555 688999999999999999999999999999877
No 113
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=98.93 E-value=8.3e-08 Score=117.27 Aligned_cols=203 Identities=14% Similarity=0.069 Sum_probs=130.9
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCCccCCccCCCCchHHHHH
Q 002152 213 QKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARF 292 (959)
Q Consensus 213 ~~~~~~~~~~l~~~~~~~l~~~~~~~v~~vr~~~g~DRv~iY~F~~d~~G~viaE~~~~~~~s~lg~~~pa~dip~~ar~ 292 (959)
.+.+.+++..|. +.+++++++++++.+++++|+||+.||.|++|+..-++..+....++. ..++|..- -...
T Consensus 14 ~~~L~~i~~~ls---~ldl~~ll~~il~~l~~~l~ad~~~i~L~d~~~~~l~~~~~~g~~~~~--~~~~p~~G---i~g~ 85 (691)
T 3ibj_A 14 DRKILQLCGELY---DLDASSLQLKVLQYLQQETRASRCCLLLVSEDNLQLSCKVIGDKVLGE--EVSFPLTG---CLGQ 85 (691)
T ss_dssp HHHHHHHHHHCC---CSSHHHHHHHHHHHHHHHTTBSCEEEEEECTTSSEEEEEEETTEEEEE--EEEEECCS---SSHH
T ss_pred HHHHHHHHHHHH---hccHHHHHHHHHHHHHHHhCCCEEEEEEEECCCCeEEEEecCCCcccc--ceecCCcc---HHHH
Confidence 344555566665 469999999999999999999999999999996543332222211211 23444431 2334
Q ss_pred HHHhCCEEEEecCCCCCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEc--CCCCCceeEEEEee
Q 002152 293 LFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN--SKDSMKLWGLVVCH 370 (959)
Q Consensus 293 ly~~~~~r~i~d~~~~~~~l~~~~~~~~~ldls~s~lRsvsp~h~~yl~nmgv~asl~v~i~~~--~~~~~~LWGLi~~h 370 (959)
.+..++.-.|+|+...| ..+..+....+++|.|++||+.+ | ++||+|.++
T Consensus 86 v~~~~~pv~i~d~~~~~------------------------~~~~~~~~~~~~~S~L~vPI~~~~~g----~viGvL~l~ 137 (691)
T 3ibj_A 86 VVEDKKSIQLKDLTSED------------------------VQQLQSMLGCELQAMLCVPVISRATD----QVVALACAF 137 (691)
T ss_dssp HHHHCCCEEGGGSCHHH------------------------HHHHHHHHTSCCSCEEEEEEECSSSC----SEEEEEEEE
T ss_pred HHHHCCeEEeccchhcc------------------------ccccccccCCccceEEEEEeEcCCCC----cEEEEEEEE
Confidence 56677777788865432 23455677788999999999987 7 999999988
Q ss_pred cCC-CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--cCCccccc-CCchhhhhccCCeE
Q 002152 371 HTS-PRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLR--DAPFSIVT-QSPSIMDLVKCDGA 446 (959)
Q Consensus 371 h~~-pr~~~~~~r~~~~~l~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~l~~l~~a~g~ 446 (959)
++. ++.|+.+....++.++.+++..|..........++.+.++.-..+...+.. .....+.. -...+..+++|+.+
T Consensus 138 ~~~~~~~ft~~d~~lL~~la~~~a~al~~a~l~~~~~~~~~~l~~L~ei~~~l~~~~~dl~~ll~~i~~~~~~~l~ad~~ 217 (691)
T 3ibj_A 138 NKLEGDLFTDEDEHVIQHCFHYTSTVLTSTLAFQKEQKLKCECQALLQVAKNLFTHLDDVSVLLQEIITEARNLSNAEIC 217 (691)
T ss_dssp SBSSSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCTTTHHHHHHHHHHHHHTEEEE
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhCCCeE
Confidence 886 678999999999999999988886443222222221211111111222222 12222222 23456778899998
Q ss_pred EEEEC
Q 002152 447 ALYYG 451 (959)
Q Consensus 447 a~~~~ 451 (959)
+|+.-
T Consensus 218 ~i~L~ 222 (691)
T 3ibj_A 218 SVFLL 222 (691)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88763
No 114
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti}
Probab=98.91 E-value=4.9e-09 Score=101.53 Aligned_cols=139 Identities=9% Similarity=0.057 Sum_probs=98.9
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCC-ccCCccCCCCchHHHHHHHHhCCEEEEecCC
Q 002152 228 GGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEP-YLGIHFPANDIPQAARFLFKQNRVRMICDCH 306 (959)
Q Consensus 228 ~~~l~~~~~~~v~~vr~~~g~DRv~iY~F~~d~~G~viaE~~~~~~~s-~lg~~~pa~dip~~ar~ly~~~~~r~i~d~~ 306 (959)
|.|++++++.+++.+.+++|+|++.||-+++++.-.+++-. +++. +... .....+ +...+..+..-+|+|+.
T Consensus 1 S~~l~~~l~~~~~~~~~~~~~~~~~i~l~d~~~~l~~~a~~---g~~~~~~~~-~~~~~~---~~~~~~~~~~~~i~d~~ 73 (151)
T 3hcy_A 1 SNAIEEVYEATLDAIQGALNCDRASILLFDEAGTMRFVAAR---GLSEHYQRA-VDGHSP---WITGANEPEPIFVENVD 73 (151)
T ss_dssp CCCCHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEE---SCCHHHHHH-TCBCCS---CC---CCCCCEEESCGG
T ss_pred CccHHHHHHHHHHHHHHhhcCCEEEEEEEcCCCcEEEEeeC---CCCHHHHhh-ccCCCc---hhhhhhcCCcEEEeChh
Confidence 35899999999999999999999999999999733333322 2211 1100 000000 11223345555566554
Q ss_pred CCCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEeecCCCCCCChhHHHHHH
Q 002152 307 AIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACE 386 (959)
Q Consensus 307 ~~~~~l~~~~~~~~~ldls~s~lRsvsp~h~~yl~nmgv~asl~v~i~~~~~~~~~LWGLi~~hh~~pr~~~~~~r~~~~ 386 (959)
..|- .+.+.+.+...|+++.+++||+.+| +++|.|..++..|+.|+.+.+.+++
T Consensus 74 ~~~~----------------------~~~~~~~~~~~g~~s~~~vPl~~~~----~~iGvl~~~~~~~~~f~~~~~~ll~ 127 (151)
T 3hcy_A 74 DAEF----------------------SRELKESIVGEGIAALGFFPLVTEG----RLIGKFMTYYDRPHRFADSEIGMAL 127 (151)
T ss_dssp GSCC----------------------CHHHHHHHHHHTCCEEEEEEEESSS----SEEEEEEEEESSCCCCCHHHHHHHH
T ss_pred hCcc----------------------cchhHHHHHhcCchheEEeceEECC----EEEEEEEEecCCCCCCCHHHHHHHH
Confidence 3322 2556677889999999999999887 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 002152 387 FLVQAFSLQLYME 399 (959)
Q Consensus 387 ~l~~~~s~~l~~~ 399 (959)
.++.+++..|+..
T Consensus 128 ~~a~~~a~ai~~~ 140 (151)
T 3hcy_A 128 TIARQLGFSIQRM 140 (151)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888654
No 115
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=98.90 E-value=2.7e-09 Score=101.05 Aligned_cols=110 Identities=13% Similarity=0.110 Sum_probs=76.6
Q ss_pred HHHHHHHHhcCCCCCCeeeeCCCCcEEeecHHHHHHhCCCchhhcCCCcccccccccccccChhhHHHHHHHHHhhhcCC
Q 002152 749 GDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQ 828 (959)
Q Consensus 749 ~~l~~i~e~~~~~i~~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l~~~~~~~ 828 (959)
..++.++++++. +|+++|.+|+|+++|+++++++||+.++++|+++.+ +++ +++...+...+......+
T Consensus 7 ~~l~~i~~~~~d---~i~~~D~~g~I~~~N~aa~~l~G~~~~el~G~~~~~-l~~-------~~~~~~~~~~~~~~~~~~ 75 (129)
T 3mfx_A 7 ETIELFIQHLTE---AMILVNANGFIRSCNQRSAELLDCPQVSLKGQDWRN-FLT-------EHHQARYDNLLSHDVQLG 75 (129)
T ss_dssp HHHHHHHTTCSS---EEEEEETTSBEEEECHHHHHHTTSCHHHHTTSBGGG-GBC-------TTCCGGGGCTTC------
T ss_pred HHHHHHHhcCCc---eEEEECCCCEEEeEhHHHHHHHCcCHHHHcCCcHHH-HcC-------hHhHHHHHHHHHHHHhcC
Confidence 457889999875 599999999999999999999999999999998664 332 222111111111111111
Q ss_pred -------CcceeeEEEEccCCcEEEEEEEEeeeeCCCCCEEEEEEEEeecc
Q 002152 829 -------GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILV 872 (959)
Q Consensus 829 -------~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~i~g~v~i~~DIT 872 (959)
..+..|++++++||+.+|+.++++|+.+ +... ++++++|..
T Consensus 76 ~~~~~~~~~~~~E~~~~rkdG~~~~velsis~i~~--~~~~-~v~~~~~~~ 123 (129)
T 3mfx_A 76 TNCGQPVQHPAQETTLICASGKAKDVELSISYIPG--HEPM-FVMVMHDLE 123 (129)
T ss_dssp ----CCSCEEEEEEEEECTTSCEEEEEEEEEEECS--SSCE-EEEEEEEC-
T ss_pred cccccccCCCceEEEEEcCCCCEEEEEEEEEEecC--CCcE-EEEEEechh
Confidence 1235788899999999999999999983 3333 667778864
No 116
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=98.88 E-value=1.8e-09 Score=99.84 Aligned_cols=108 Identities=8% Similarity=-0.009 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhcCCCCCCeeeeCCCCcEEeecHHHHHHhCCCchhhcCCCcccccccccccccChhhHHHHHHHHHhhhc
Q 002152 747 LQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGIT 826 (959)
Q Consensus 747 se~~l~~i~e~~~~~i~~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l~~~~~ 826 (959)
++++++.++++++. +++++|.+|+|+++|+++++++|++.++++|+++.+ +.+++....+.........
T Consensus 17 ~~~~~~~i~~~~~~---~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~--------~~~~~~~~~~~~~~~~~~~ 85 (125)
T 3fc7_A 17 TRKKFESLVSDSPD---GIVHLTTNGTILSVNPSMAGRLGADPDTLVGQQLSA--------VMDSEAANQRLEAGKSAVE 85 (125)
T ss_dssp ---------CCSCC---EEEEEETTSBEEEECHHHHHHHTSCHHHHTTSBGGG--------SSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC---eEEEEcCCCeEEEECHHHHHHhCCCHHHHcCccHHH--------hCCHHHHHHHHHHHHHHhc
Confidence 77889999999985 499999999999999999999999999999998654 2224443333333344444
Q ss_pred CCCcceeeEEEEccCCc-EEEEEEEEeeeeCCCCCEEEEEEEEeecc
Q 002152 827 GQGTENFPFGFFNRQGQ-FVEVALTASRRTDAEGKVIGCFCFMQILV 872 (959)
Q Consensus 827 ~~~~~~~e~~~~~~dG~-~~~v~~~~~pi~d~~G~i~g~v~i~~DIT 872 (959)
.+... ..++|. .+|+.++..|+.+. |...|++++++|||
T Consensus 86 ~~~~~------~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~DIT 125 (125)
T 3fc7_A 86 NGTAT------RSEDAVGGRHYHNQYIPVDSH-RKSDTFQLVSRDIT 125 (125)
T ss_dssp HTSCE------EEEEEETTEEEEEEEEESSTT-TTTTEEEEEEEECC
T ss_pred CCCeE------EeEcCCCcEEEEEEEEeEecC-CCeEEEEEEEecCC
Confidence 33222 233454 68899999998765 66678999999998
No 117
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=98.85 E-value=1.6e-08 Score=94.08 Aligned_cols=105 Identities=11% Similarity=0.157 Sum_probs=74.8
Q ss_pred HHHHHHHHhcCCCCCCeeeeCCCCcEEeecHHHHHHhC------------CCchhhcCCCcccccccccccccChhhHHH
Q 002152 749 GDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTG------------WMRHEVIGKMLPREIFGNFCRMKGQDMLTK 816 (959)
Q Consensus 749 ~~l~~i~e~~~~~i~~I~~~D~~g~i~~~N~a~~~l~G------------~~~eeviGk~~~~~i~~~~~~l~~~e~~~~ 816 (959)
.+++.++++++. +++++|.+|+|+++|+++++++| |+.++++|+++.. ++. .+...
T Consensus 5 ~rl~~il~~~~~---gviv~D~~g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~~~~~-~~~------~~~~~-- 72 (121)
T 4hi4_A 5 ARIASALDNVSA---NVMIADNDLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDV-FHK------NPAHQ-- 72 (121)
T ss_dssp HHHHHHHTTSSS---EEEEEETTCBEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTCBGGG-GCS------SHHHH--
T ss_pred HHHHHHHhcCCc---cEEEEcCCCeEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCCCHHH-hcC------CHHHH--
Confidence 568899999875 59999999999999999999996 8999999998543 221 12211
Q ss_pred HHHHHHhhhcCCCcceeeEEEEccCCcEEEEEEEEeeeeCCCCCEEEEEEEEeecccc
Q 002152 817 FMILLYQGITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPD 874 (959)
Q Consensus 817 ~~~~l~~~~~~~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~i~g~v~i~~DITer 874 (959)
...+.. .. ..+..++. .+|. ++.++.+|++|.+|++.|++++++|||++
T Consensus 73 -~~~~~~-~~--~~~~~~~~---~~~~--~~~~~~~pi~~~~g~~~g~v~~~~DiTee 121 (121)
T 4hi4_A 73 -RHLLAN-LT--GVHKAELN---LGGR--RFSLDVVPVFNDANARLGSAVQWTDRTEE 121 (121)
T ss_dssp -HHHHHH-CS--SCEEEEEE---ETTE--EEEEEEEEEECTTSCEEEEEEEEEECC--
T ss_pred -HHHHhC-cC--CCcEEEEE---ECCE--EEEEEEEEEECCCCCEEEEEEEEEEecCC
Confidence 112221 21 22333332 2444 55788999999999999999999999974
No 118
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=98.85 E-value=3.4e-08 Score=110.87 Aligned_cols=203 Identities=12% Similarity=0.033 Sum_probs=131.6
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCCccCCccCCCCchHHHHHH
Q 002152 214 KLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFL 293 (959)
Q Consensus 214 ~~~~~~~~~l~~~~~~~l~~~~~~~v~~vr~~~g~DRv~iY~F~~d~~G~viaE~~~~~~~s~lg~~~pa~dip~~ar~l 293 (959)
+.+..+...| + +.|++++++.+++.+++++|+||+.||.+++|+. +.++.+... ....-+.++|...=+ +...
T Consensus 14 ~~l~~l~~~l-~--~~dl~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~-~l~~~~~~g-~~~~~~~~~~~~~g~--~g~~ 86 (368)
T 1mc0_A 14 RKILQLCGEL-F--DLDATSLQLKVLQYLQQETQATHCCLLLVSEDNL-QLSCKVIGD-KVLGEEVSFPLTMGR--LGQV 86 (368)
T ss_dssp HHHHHHHHTC-C--CSSHHHHHHHHHHHHHHHSCEEEEEEEEECSSSC-EEEEEEETT-EEEEEEEEEESSSSS--HHHH
T ss_pred HHHHHHHHHH-h--hhhHHHHHHHHHHHHHHHhCCcEEEEEEEeCCCC-eEEEEecCC-CccccceeeccccCH--HHHH
Confidence 3445566666 4 6799999999999999999999999999998865 444443322 111223345543211 2455
Q ss_pred HHhCCEEEEecCCCCCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEc--CCCCCceeEEEEeec
Q 002152 294 FKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN--SKDSMKLWGLVVCHH 371 (959)
Q Consensus 294 y~~~~~r~i~d~~~~~~~l~~~~~~~~~ldls~s~lRsvsp~h~~yl~nmgv~asl~v~i~~~--~~~~~~LWGLi~~hh 371 (959)
+..+++-.|+|+...|- ++......++++|.|++||+.+ | ++||+|.+++
T Consensus 87 ~~~~~~~~i~d~~~~~~------------------------~~~~~~~~~~~~s~l~vPl~~~~~~----~~~Gvl~l~~ 138 (368)
T 1mc0_A 87 VEDKQCIQLKDLTSDDV------------------------QQLQNMLGCELQAMLCVPVISRATD----QVVALACAFN 138 (368)
T ss_dssp HHHCCCEEGGGSCHHHH------------------------HHHHHHHCSCCCCEEEEEEECTTTC----SEEEEEEEEE
T ss_pred HhcCCeEEecccccccc------------------------cccccccCcccceEEEEEeecCCCC----cEEEEEEeec
Confidence 77888888888764321 3445677888999999999988 7 9999999888
Q ss_pred CC-CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcc-cCCccc-ccCCchhhhhccCCeEE
Q 002152 372 TS-PRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLA-EKNILRTQVLLCDMLLR-DAPFSI-VTQSPSIMDLVKCDGAA 447 (959)
Q Consensus 372 ~~-pr~~~~~~r~~~~~l~~~~s~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~l~~l~~a~g~a 447 (959)
+. ++.|+......++.++.+++..|......+.... ++...........+... .....+ ..-...+..+++|+.++
T Consensus 139 ~~~~~~f~~~d~~~l~~la~~~~~al~~~~l~~~~~~~~~~l~~l~~i~~~l~~~~~~~~~~l~~i~~~~~~~~~~~~~~ 218 (368)
T 1mc0_A 139 KLGGDFFTDEDEHVIQHCFHYTGTVLTSTLAFQKEQKLKCECQALLQVAKNLFTHLDDVSVLLQEIITEARNLSNAEICS 218 (368)
T ss_dssp ESSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhcccEEE
Confidence 87 5679999999999999999998875422221111 11111111111111111 122222 22234567788999887
Q ss_pred EEEC
Q 002152 448 LYYG 451 (959)
Q Consensus 448 ~~~~ 451 (959)
|+.-
T Consensus 219 i~l~ 222 (368)
T 1mc0_A 219 VFLL 222 (368)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7663
No 119
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.84 E-value=9.3e-09 Score=93.94 Aligned_cols=105 Identities=12% Similarity=0.109 Sum_probs=79.6
Q ss_pred HHHHHhcCccEEEEcCCCceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHHHHc-CCCcceEEEEEEee
Q 002152 621 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALL-GEEDKNVELKLRKF 699 (959)
Q Consensus 621 ~~lie~~~~~I~~~D~dg~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~l~-~~~~~~~e~~~~~~ 699 (959)
..++++++++++++|.+|+|+++|+++++++|++.++++|+++. +++++... ....+..++. +......++.+
T Consensus 10 ~~il~~~~~~i~~~D~~g~I~~~N~aa~~l~g~~~~~~~g~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--- 83 (115)
T 3b33_A 10 SAILNNMVTATLILDDGLAIRYANPAAELLFSQSAKRIVEQSLS-QLIQHASL--DLALLTQPLQSGQSITDSDVTF--- 83 (115)
T ss_dssp HHHHHHCSSEEEEECTTCBEEEECHHHHHHTTSCHHHHTTCBHH-HHCSEEEC--CTHHHHHHHHHCCCEEEEEEEE---
T ss_pred HHHHhhcCceEEEECCCCcEEEECHHHHHHhCCCHHHHhCCCHH-HHhCccch--hhHHHHHHHHcCCcccCCceEE---
Confidence 45899999999999999999999999999999999999999987 76654321 1122333333 33222334443
Q ss_pred eeccCCcEEEEEEEEEEeecCCCCEEEEEEEeecch
Q 002152 700 ELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735 (959)
Q Consensus 700 ~~~~dG~~~~v~v~~~pi~d~~g~~~gvv~v~~DIT 735 (959)
. ++|+.+|+.++..|+.+ +|. .+++.+++||+
T Consensus 84 -~-~~g~~~~~~~~~~pi~~-~g~-~~~l~~~~Di~ 115 (115)
T 3b33_A 84 -V-VDGRPLMLEVTVSPITW-QRQ-LMLLVEMRKID 115 (115)
T ss_dssp -E-ETTEEEEEEEEEEEEEE-TTE-EEEEEEEEEC-
T ss_pred -e-cCCCEEEEEEEEEEeec-CCc-eEEEEEEEeCC
Confidence 3 57889999999999998 776 68899999985
No 120
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=98.83 E-value=1.4e-08 Score=98.82 Aligned_cols=118 Identities=14% Similarity=0.131 Sum_probs=84.3
Q ss_pred HHHHHHHHhcCCCCCCeeeeCCCCcEEeecHH---HHHHhCCCchhhcCCCcccccccccccccChhhHHHHHHHHHhhh
Q 002152 749 GDYEAIIQSVNPLIPPIFASDENACCSEWNAA---MEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGI 825 (959)
Q Consensus 749 ~~l~~i~e~~~~~i~~I~~~D~~g~i~~~N~a---~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l~~~~ 825 (959)
..+.+++++++. +|+++|.+|+|++||++ +++++| ..++++|++..+ + ..+... .....+...+
T Consensus 19 ~~l~~IL~~~~~---gI~~vD~~g~I~~~N~a~~~~~~i~g-~~~~~iGr~v~~-~-------~~~~~~-~~v~~i~~~l 85 (151)
T 2qkp_A 19 EQANLILNHLPL---EITFVNKDDIFQYYNDSVPAAEMVFK-RTPSQVGRNVEL-C-------HPPKVL-DKVKKVFELL 85 (151)
T ss_dssp HHHHHHHHHSSS---EEEEEETTSBEEEECCCSCGGGCSSC-CCGGGTTSBGGG-S-------SCHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHhCCC---ceEEEcCCCeEEEEeCCCchhhhhcC-CCHHHcCCCHHH-h-------CCHHHH-HHHHHHHHHH
Confidence 347789999985 49999999999999999 999999 668899998653 1 222222 2223334444
Q ss_pred cCCCcceeeEEEEccCCcEEEEEEEEeeeeCCCCCEEEEEEEEeecccccHHHHH
Q 002152 826 TGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALE 880 (959)
Q Consensus 826 ~~~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~i~g~v~i~~DITerk~~Ele 880 (959)
..+.....++.+...+ ..+++..+..|++|++|+++|++.+++|||+.++.+.+
T Consensus 86 ~~g~~~~~~~~~~~~~-~~~~v~v~~~Pi~d~~G~~~G~vev~~Dit~l~~le~~ 139 (151)
T 2qkp_A 86 RNGQRDKVNMWFQSER-LGKFVYVTYAAVRDQAGDFQGVLEYVQDIKPFFELDSE 139 (151)
T ss_dssp HTTSBSEEEEEEEETT-TTEEEEEEEEEEECTTCCEEEEEEEEEECGGGGGGGGC
T ss_pred HcCCccEEEEEEecCC-CCeEEEEEEEEEECCCCCEEEEEEEEEECHHHHhhhhh
Confidence 4444555555443322 12567889999999999999999999999987655533
No 121
>2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A
Probab=98.29 E-value=5.6e-10 Score=121.98 Aligned_cols=170 Identities=11% Similarity=-0.002 Sum_probs=113.3
Q ss_pred EEEEEEEeecCCCCEEEEEEEee-cchhh---HHHHHHHHHHHHHHHHHHH-----------------hcCCCCCCeeee
Q 002152 710 ILVNACTSRDYKNNVKGVCFVGQ-DITHE---KVLMDKFIRLQGDYEAIIQ-----------------SVNPLIPPIFAS 768 (959)
Q Consensus 710 v~v~~~pi~d~~g~~~gvv~v~~-DITer---k~~E~~L~~se~~l~~i~e-----------------~~~~~i~~I~~~ 768 (959)
+..+..|+++ +|+++|++++.+ |+|++ +..|.+.++....+..++. +++ +||+++
T Consensus 111 v~~~~~Pi~~-~g~vigvl~~~~~di~~~~~~~~~e~~~~~~~~~L~~mi~~~~~~~~~~~~~~~~~~~~~---dGIivv 186 (305)
T 2ykf_A 111 HSVEVSPVRF-GDQVVAVLTRHQPELAARRRSGHLETAYRLCATDLLRMLAEGTFPDAGDVAMSRSSPRAG---DGFIRL 186 (305)
Confidence 6788999997 689999999999 99998 4566666666666766664 444 569999
Q ss_pred CCCCcEEeecHHHHHHhC---CCchhhcCCCcccccccccccccChhhHHHHHHHHHhhhcC-CCcceeeEEEEccCCcE
Q 002152 769 DENACCSEWNAAMEKVTG---WMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITG-QGTENFPFGFFNRQGQF 844 (959)
Q Consensus 769 D~~g~i~~~N~a~~~l~G---~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l~~~~~~-~~~~~~e~~~~~~dG~~ 844 (959)
|.+|+|+++|+++++++| ++ ++++|+++.+ ++..... .+.....+...+..++.+ +.....+.. .+ .
T Consensus 187 D~~G~Ii~~N~aA~~ll~~lG~~-~~~iGk~l~e-l~~~~~~--~~~~~~~~~~~l~~vl~~~~~~~~~ei~---~~--~ 257 (305)
T 2ykf_A 187 DVDGVVSYASPNALSAYHRMGLT-TELEGVNLID-ATRPLIS--DPFEAHEVDEHVQDLLAGDGKGMRMEVD---AG--G 257 (305)
Confidence 999999999999999985 44 7889998653 2221000 000000122222223333 333322222 12 3
Q ss_pred EEEEEEEeeeeCCCCCEEEEEEEEeecccccHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 002152 845 VEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQ 901 (959)
Q Consensus 845 ~~v~~~~~pi~d~~G~i~g~v~i~~DITerk~~Elelq~~ae~~~~ak~~fLa~iSH 901 (959)
+++.++..|+.+ +|++.|++.+++|||+.++.|.+++ .|+..+..|.|
T Consensus 258 ~~l~v~~~Pi~~-~g~~~G~Vvv~rDITE~~~lE~eL~--------~K~~~IrEIHH 305 (305)
T 2ykf_A 258 ATVLLRTLPLVV-AGRNVGAAILIRDVTEVKRRDRALI--------SKDATIREIHH 305 (305)
Confidence 567788889886 5888999999999999888776653 35555665555
No 122
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans}
Probab=98.78 E-value=1.4e-07 Score=93.27 Aligned_cols=139 Identities=10% Similarity=0.081 Sum_probs=102.4
Q ss_pred CCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCCc--cCCccCCCCchHHHHHHHHhCCEEEEecCC
Q 002152 229 GDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPY--LGIHFPANDIPQAARFLFKQNRVRMICDCH 306 (959)
Q Consensus 229 ~~l~~~~~~~v~~vr~~~g~DRv~iY~F~~d~~G~viaE~~~~~~~s~--lg~~~pa~dip~~ar~ly~~~~~r~i~d~~ 306 (959)
.+++++++.+++.++++++||++-+|-++++ +.+.++..+.-... .|..+|..+-+ ....+..++..++ |+.
T Consensus 4 ~sldevL~~v~~~l~~~~~~d~~~l~L~~~~---~L~l~a~~~~~~~~~~~~~~ip~~~s~--~~~v~~~~~~~v~-~~~ 77 (165)
T 3o5y_A 4 MSLDDIINNMIDKLKLLVHFDRISFLLLANE---TLKLSHVYPKGSHSLDIGSTIPKEQSL--YWSALDQRQTIFR-SLT 77 (165)
T ss_dssp CCHHHHHHHHHHHHHHHSCCSEEEEEEEETT---EEEEEEEESTTCCSSCTTCEECSTTCH--HHHHHHHTSCEEE-ESC
T ss_pred CCHHHHHHHHHHHHHHhcCcceEEEEEEECC---EEEEEEEecCCccccccccccCCccCH--HHHHHHhCCeEEE-cCc
Confidence 4899999999999999999999999999753 33333333322222 46677763322 2334555665554 433
Q ss_pred CCCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEeecCCCCCCChhHHHHHH
Q 002152 307 AIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACE 386 (959)
Q Consensus 307 ~~~~~l~~~~~~~~~ldls~s~lRsvsp~h~~yl~nmgv~asl~v~i~~~~~~~~~LWGLi~~hh~~pr~~~~~~r~~~~ 386 (959)
..+- .-+...|+...|++|.|++||+.+| ++||.|...+..|+.++.+....++
T Consensus 78 ~~~~----------------------~~~~~~~~~~~~~~S~l~vPL~~~~----~~iGvl~l~~~~~~~f~~~d~~~l~ 131 (165)
T 3o5y_A 78 DTQD----------------------NFYEKQYLAILDLKSILVIPIYSKN----KRVGVLSIGRKQQIDWSLDDLAFLE 131 (165)
T ss_dssp CTTC----------------------CCTTHHHHHTTTCCEEEEEEEECSS----CEEEEEEEEESSCCCCCHHHHHHHH
T ss_pred cccc----------------------ccccchHHHhhCCCEEEEeCeeECC----EEEEEEEEEeCCCCCCCHHHHHHHH
Confidence 2221 1223468899999999999999998 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 002152 387 FLVQAFSLQLYME 399 (959)
Q Consensus 387 ~l~~~~s~~l~~~ 399 (959)
.|+.++++.|+.+
T Consensus 132 ~la~~~aiai~na 144 (165)
T 3o5y_A 132 QLTDHLAVSIENV 144 (165)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988644
No 123
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=98.77 E-value=3e-09 Score=98.46 Aligned_cols=111 Identities=12% Similarity=0.121 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCeeeeCCCCcEEeecHHHHHHhCCCchhhcCCCcccccccccccccChhhHHHHHHHHHhh
Q 002152 745 IRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQG 824 (959)
Q Consensus 745 ~~se~~l~~i~e~~~~~i~~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l~~~ 824 (959)
...+..++.++++++. +++++|.+|+|+++|+++++++|++.++++|+++.+ +++ +.....+...+.++
T Consensus 8 ~~~~~~~~~il~~~~~---~i~~~D~~g~i~~~N~a~~~l~g~~~~e~~G~~~~~-~~~-------~~~~~~~~~~~~~~ 76 (118)
T 3fg8_A 8 HHHSSGRENLYFQGGL---GFMALDEDLRIIYVNSGCLRHVRRSRDELLGRVVTE-VLP-------ETQGSYFDALCRKV 76 (118)
T ss_dssp -----CCCCSSSCTTC---EEEEECTTCBEEEECHHHHHHHTCCHHHHTTSBHHH-HCG-------GGTTSHHHHHHHHH
T ss_pred ccccchHHHHHhhCCc---eEEEECCCCeEEEECHHHHHHhCCCHHHHcCCcHHH-HcC-------ccchHHHHHHHHHH
Confidence 3445566788888875 599999999999999999999999999999998653 332 22223344556666
Q ss_pred hcCCCcceeeEEEEccCCcEEEEEEEEeeeeCCCCCEEEEEEEEeecccc
Q 002152 825 ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPD 874 (959)
Q Consensus 825 ~~~~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~i~g~v~i~~DITer 874 (959)
+..+....+++.....+| .|+.++..|+.+ |++++++|||+|
T Consensus 77 ~~~~~~~~~~~~~~~~~g--~~~~~~~~p~~~------g~v~~~~DITer 118 (118)
T 3fg8_A 77 LATGREQQTRVDSLYSPG--MTIEVTAAADSG------ALVVHFRDVTAE 118 (118)
T ss_dssp HHHCCCEEEEEECSSSTT--CEEEEEEEEETT------EEEEEEEECSCC
T ss_pred HHcCCceEEEEEEEcCCC--eEEEEEEEEcCC------cEEEEEEeccCC
Confidence 665556555333333466 567777888754 377888999985
No 124
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=98.75 E-value=5e-09 Score=95.45 Aligned_cols=108 Identities=16% Similarity=0.189 Sum_probs=82.6
Q ss_pred hHHHHHHHHHHHHHHHhcCccEEEEcCCCceehhcHHHHHHhCC---CcccccCCCccccccCCCchHHHHHHHHHHHcC
Q 002152 610 VDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGL---PASEAMGKSLIDEVVHEESQGAVENLICRALLG 686 (959)
Q Consensus 610 ~~eL~~~~~~l~~lie~~~~~I~~~D~dg~iv~~N~~~~~l~G~---~~eeliGk~~~~~l~~~~~~~~~~~~l~~~l~~ 686 (959)
.++++...++++.++++++++++++|.+|+|+++|+++++++|+ +.++++|+++. +++++.. +...+..
T Consensus 7 ~~~l~~~~~~~~~il~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~~~~g~~~~-~~~~~~~-------~~~~~~~ 78 (118)
T 2w0n_A 7 PYEISTLFEQRQAMLQSIKEGVVAVDDRGEVTLINDAAQELLNYRKSQDDEKLSTLSH-SWSQVVD-------VSEVLRD 78 (118)
T ss_dssp HHHHCTTHHHHHHHHHCCCCCCEEEBTTTBCCCBCHHHHHHHCSCTTTTTSSCCCTTC-CCSCTHH-------HHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhccccEEEECCCCcEeehhHHHHHHhCCCccChhhhhccCcc-cccCchh-------HHHHhcc
Confidence 45666677788999999999999999999999999999999997 88999999987 7765532 2233333
Q ss_pred CCcc-eEEEEEEeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEeecch
Q 002152 687 EEDK-NVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735 (959)
Q Consensus 687 ~~~~-~~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~~~gvv~v~~DIT 735 (959)
+... ... + ..+| .|+.++..|+.+ +|.+.|++++++|||
T Consensus 79 ~~~~~~~~--~-----~~~~--~~~~~~~~p~~~-~g~~~g~v~~~~DiT 118 (118)
T 2w0n_A 79 GTPRRDEE--I-----TIKD--RLLLINTVPVRS-NGVIIGAISTFRDKT 118 (118)
T ss_dssp TCCCCCCC--E-----ESSS--CEECCCEECCCC-SSCCCCEEECCCCCC
T ss_pred CceeccEE--E-----EECC--EEEEEeeceeee-CCEEEEEEEEEEeCC
Confidence 3221 111 1 1234 477888899987 788889999999997
No 125
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=98.70 E-value=2.4e-09 Score=119.31 Aligned_cols=121 Identities=19% Similarity=0.282 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHhcCccEEEEcCCCceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHHHHcCCCcceEE
Q 002152 614 SSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVE 693 (959)
Q Consensus 614 ~~~~~~l~~lie~~~~~I~~~D~dg~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e 693 (959)
+.++++++.++++++++|+++|.+|+|++||+++++++||+.++++|+++. ++.+++. ....+......+....
T Consensus 4 ~~~~~~~~~i~~~~~~~i~~~d~~g~i~~~N~a~~~l~G~~~~e~~G~~~~-~~~~~~~---~~~~~~~~~~~~~~~~-- 77 (349)
T 3a0r_A 4 EHLRNFSESILESLETAIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLK-DLPDFEE---IGSVAESVFENKEPVF-- 77 (349)
T ss_dssp -----CCCSSGGGSSSEEEEEESSSBCSCBCHHHHHHHSCCSTTTTTCBST-TSTTTTH---HHHHHHHHHHHCCCCE--
T ss_pred HHHHHHHHHHHhhhcCeEEEECCCCCEEeeHHHHHHHhCCCHHHHcCcCHH-HCcChhH---HHHHHHHHHhcCCcee--
Confidence 344556788999999999999999999999999999999999999999987 6643332 2233333443333221
Q ss_pred EEEEeeeeccCCcEEEEEEEEEEeecCCCCE-EEEEEEeecchhhHHHHHHHHH
Q 002152 694 LKLRKFELQKQHSVVYILVNACTSRDYKNNV-KGVCFVGQDITHEKVLMDKFIR 746 (959)
Q Consensus 694 ~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~~-~gvv~v~~DITerk~~E~~L~~ 746 (959)
... ..+..+|+.++..|+++.+|.. .|++++++|||++|++++++++
T Consensus 78 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~DiTe~~~~e~~~~~ 125 (349)
T 3a0r_A 78 LNF------YKFGERYFNIRFSPFRNAKTQLLEGVIITIDDVTELYKYEEERKR 125 (349)
T ss_dssp EEC------CCBTTBCCEEEEEEECCTTTTSSCEEEEEEECCSTTTTTTTTTTH
T ss_pred ecc------cccCceEEEEEEEEEEcCCCceeeEEEEEEEechHHHHHHHHHHH
Confidence 111 1223468889999999887775 5899999999999988766543
No 126
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=98.70 E-value=9.4e-09 Score=94.04 Aligned_cols=103 Identities=17% Similarity=0.174 Sum_probs=75.5
Q ss_pred hcCccEEEEcCC-CceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHHHHcC-CCc---ceEEEEEEeee
Q 002152 626 TATAPIFGVDSS-GTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG-EED---KNVELKLRKFE 700 (959)
Q Consensus 626 ~~~~~I~~~D~d-g~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~l~~-~~~---~~~e~~~~~~~ 700 (959)
+.+++|+++|.+ |+|+++|++++++|||+.++++|+++. ++++++............... +.. ...++.+
T Consensus 6 ~~~~~i~~~d~~~g~I~~~N~aa~~l~G~~~~el~g~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 80 (114)
T 1ll8_A 6 EFNKAIFTVDAKTTEILVANDKACGLLGYSSQDLIGQKLT-QFFLRSDSDVVEALSEEHMEADGHAAVVFGTVVDI---- 80 (114)
T ss_dssp TTTCEEEEEETTTCBEEEECTTHHHHHTCCTTTTTTSBGG-GGSSCTTTHHHHHTTSSTTSSSSCSSCCCSSSEEE----
T ss_pred CCCceEEEEECCCCeEEEehHHHHHHhCCCHHHHcCCCHH-HhcCcchhHHHHHHHHHhhccCCcceeccCcEEEE----
Confidence 355799999999 999999999999999999999999998 888876554332222211111 111 1233444
Q ss_pred eccCCcEEEEEEEEEEeecCCCCEEEEEEEeecch
Q 002152 701 LQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735 (959)
Q Consensus 701 ~~~dG~~~~v~v~~~pi~d~~g~~~gvv~v~~DIT 735 (959)
.+++|+.+|+.++..|+.+.++. +++++++|++
T Consensus 81 ~~~dG~~~~v~~~~~~~~~~~~~--~~v~~~~~~~ 113 (114)
T 1ll8_A 81 ISRSGEKIPVSVWMKRMRQERRL--CCVVVLEPVE 113 (114)
T ss_dssp CCTTCCCEEEECCEECCBSSSSB--EEEEEEEECC
T ss_pred EecCCCEEEEEEEEEeeccCCcc--EEEEEEeecC
Confidence 68899999999999999876543 5678888875
No 127
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=98.69 E-value=2.2e-08 Score=91.45 Aligned_cols=100 Identities=15% Similarity=0.182 Sum_probs=70.9
Q ss_pred CCeeeeCCC-CcEEeecHHHHHHhCCCchhhcCCCcccccccccccccChhhHHHHHHHHHhhhcC-CCc---ceeeEEE
Q 002152 763 PPIFASDEN-ACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITG-QGT---ENFPFGF 837 (959)
Q Consensus 763 ~~I~~~D~~-g~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l~~~~~~-~~~---~~~e~~~ 837 (959)
++|+++|.+ |+|+++|+++++++||+.++++|+++.. ++ ++++.............. +.. ...++.+
T Consensus 9 ~~i~~~d~~~g~I~~~N~aa~~l~G~~~~el~g~~~~~-l~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (114)
T 1ll8_A 9 KAIFTVDAKTTEILVANDKACGLLGYSSQDLIGQKLTQ-FF-------LRSDSDVVEALSEEHMEADGHAAVVFGTVVDI 80 (114)
T ss_dssp CEEEEEETTTCBEEEECTTHHHHHTCCTTTTTTSBGGG-GS-------SCTTTHHHHHTTSSTTSSSSCSSCCCSSSEEE
T ss_pred ceEEEEECCCCeEEEehHHHHHHhCCCHHHHcCCCHHH-hc-------CcchhHHHHHHHHHhhccCCcceeccCcEEEE
Confidence 469999999 9999999999999999999999998654 22 233222211111111221 111 1456778
Q ss_pred EccCCcEEEEEEEEeeeeCCCCCEEEEEEEEeecc
Q 002152 838 FNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILV 872 (959)
Q Consensus 838 ~~~dG~~~~v~~~~~pi~d~~G~i~g~v~i~~DIT 872 (959)
++++|+.+|+.++.+|+.+.++. +++++++|++
T Consensus 81 ~~~dG~~~~v~~~~~~~~~~~~~--~~v~~~~~~~ 113 (114)
T 1ll8_A 81 ISRSGEKIPVSVWMKRMRQERRL--CCVVVLEPVE 113 (114)
T ss_dssp CCTTCCCEEEECCEECCBSSSSB--EEEEEEEECC
T ss_pred EecCCCEEEEEEEEEeeccCCcc--EEEEEEeecC
Confidence 89999999999999999876553 4678889876
No 128
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=98.69 E-value=4.2e-08 Score=110.23 Aligned_cols=114 Identities=13% Similarity=0.144 Sum_probs=89.3
Q ss_pred HHHHHHHHhcCccEEEEcCCCceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHHHHcCCCcceEEEEEE
Q 002152 618 CEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLR 697 (959)
Q Consensus 618 ~~l~~lie~~~~~I~~~D~dg~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~~~ 697 (959)
+++..+++++++||+++|.+|+|+++|++ +++| ++.++++|+++. +++++.....+...+.....|.. ...++.+
T Consensus 239 ~~l~~IL~~l~dgIivvD~~g~I~~~N~a-e~i~-~~~~e~iGr~v~-~~~p~~~~~~~~~l~~~l~~g~~-~~~~~~~- 313 (369)
T 3cax_A 239 EELKAIFEALPVDVTFIDKDDRVRFFSPG-ERIF-TRTPSVLGRPVQ-LCHPPKSVYVVNKILKAFKEGRK-KEATFWL- 313 (369)
T ss_dssp HHHHHHHHHSSSEEEEECTTSBEEEECCS-SCSS-CCCGGGTTCBTT-TSSCGGGHHHHHHHHHHHHHTSC-SCEEEEE-
T ss_pred HHHHHHHHhCCCcEEEECCCCcEEEEcCH-HHcc-CChHHHcCCcHH-HHCChhhHHHHHHHHHHHHcCCc-eEEEEEE-
Confidence 35788999999999999999999999999 9999 899999999998 77765554444444444444433 3334333
Q ss_pred eeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEeecchhhHHHHH
Q 002152 698 KFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMD 742 (959)
Q Consensus 698 ~~~~~~dG~~~~v~v~~~pi~d~~g~~~gvv~v~~DITerk~~E~ 742 (959)
..+| +++.++..|++|.+|+++|++.+++|||+.+++++
T Consensus 314 ----~~~g--~~v~v~~~PI~d~~G~~~G~v~v~~DITe~~~le~ 352 (369)
T 3cax_A 314 ----RLRE--KYVYIKYVPLFNEKGEYIGTLEMTMDIAPYKKIEG 352 (369)
T ss_dssp ----EETT--EEEEEEEEEEECTTSCEEEEEEEEEECHHHHTCCS
T ss_pred ----eeCC--EEEEEEEEEEECCCCCEEEEEEEEEcCHHHHHHHH
Confidence 2245 57899999999999999999999999999887654
No 129
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=98.67 E-value=6.2e-07 Score=100.51 Aligned_cols=150 Identities=11% Similarity=0.155 Sum_probs=110.9
Q ss_pred HHHHHHhhcCCC-CCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCC--CCccCCccCCCCchHHHHHH
Q 002152 217 VSAISRLQALPG-GDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDL--EPYLGIHFPANDIPQAARFL 293 (959)
Q Consensus 217 ~~~~~~l~~~~~-~~l~~~~~~~v~~vr~~~g~DRv~iY~F~~d~~G~viaE~~~~~~--~s~lg~~~pa~dip~~ar~l 293 (959)
..+...+.+ + .+++++++.+++.+++++|+||+.||.+++ |+.+..+...++ +...+..+|... .-+...
T Consensus 184 ~~i~~~l~~--~~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~---~~l~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~ 256 (368)
T 1mc0_A 184 LQVAKNLFT--HLDDVSVLLQEIITEARNLSNAEICSVFLLDQ---NELVAKVFDGGVVDDESYEIRIPADQ--GIAGHV 256 (368)
T ss_dssp HHHHHHHHH--TTTCHHHHHHHHHHHHHHHHTEEEEEEEEECS---SSEEEEEETTEECCCSTTCCEECTTS--HHHHHH
T ss_pred HHHHHHHHh--cccCHHHHHHHHHHHHHHHhcccEEEEEEEeC---CceEEEEeccccccccccceeecCCC--ceeeee
Confidence 334445555 4 489999999999999999999999999998 445444443222 234566777542 335567
Q ss_pred HHhCCEEEEecCCCCCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEc-CCCCCceeEEEEeecC
Q 002152 294 FKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN-SKDSMKLWGLVVCHHT 372 (959)
Q Consensus 294 y~~~~~r~i~d~~~~~~~l~~~~~~~~~ldls~s~lRsvsp~h~~yl~nmgv~asl~v~i~~~-~~~~~~LWGLi~~hh~ 372 (959)
+..+...+|+|+...|- . +........+.+++.|++||+.. | ++||.|.++++
T Consensus 257 ~~~~~~~~i~d~~~~~~--~--------------------~~~~~~~~~~~~~s~l~vPl~~~~~----~~iGvl~l~~~ 310 (368)
T 1mc0_A 257 ATTGQILNIPDAYAHPL--F--------------------YRGVDDSTGFRTRNILCFPIKNENQ----EVIGVAELVNK 310 (368)
T ss_dssp HHHCCCEEESCSTTCTT--C--------------------CCTTHHHHTCCCCCEEEEEEECTTS----CEEEEEEEEEE
T ss_pred hhhCCEEEecCcccCcc--c--------------------chhhhhccCCccceEEEEeeECCCC----cEEEEEEEEEC
Confidence 88899999999876543 0 11122234456799999999984 7 99999999999
Q ss_pred CCC-CCChhHHHHHHHHHHHHHHHHHHH
Q 002152 373 SPR-YIPFPLRYACEFLVQAFSLQLYME 399 (959)
Q Consensus 373 ~pr-~~~~~~r~~~~~l~~~~s~~l~~~ 399 (959)
.++ .|+.+.+.+++.++.++++.|+.+
T Consensus 311 ~~~~~f~~~d~~ll~~la~~~a~ai~na 338 (368)
T 1mc0_A 311 INGPWFSKFDEDLATAFSIYCGISIAHS 338 (368)
T ss_dssp TTSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 875 799999999999999999888654
No 130
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.64 E-value=6.3e-08 Score=88.29 Aligned_cols=105 Identities=18% Similarity=0.169 Sum_probs=76.7
Q ss_pred HHHHHhcCCCCCCeeeeCCCCcEEeecHHHHHHhCCCchhhcCCCcccccccccccccChhhHHHHHHHHHhhhc-CCCc
Q 002152 752 EAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGIT-GQGT 830 (959)
Q Consensus 752 ~~i~e~~~~~i~~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l~~~~~-~~~~ 830 (959)
..++++++. +++++|.+|+|+++|+++++++|++.++++|+++.. ++.... ... ..+.+++. +...
T Consensus 10 ~~il~~~~~---~i~~~D~~g~I~~~N~aa~~l~g~~~~~~~g~~~~~-~~~~~~-----~~~----~~~~~~~~~~~~~ 76 (115)
T 3b33_A 10 SAILNNMVT---ATLILDDGLAIRYANPAAELLFSQSAKRIVEQSLSQ-LIQHAS-----LDL----ALLTQPLQSGQSI 76 (115)
T ss_dssp HHHHHHCSS---EEEEECTTCBEEEECHHHHHHTTSCHHHHTTCBHHH-HCSEEE-----CCT----HHHHHHHHHCCCE
T ss_pred HHHHhhcCc---eEEEECCCCcEEEECHHHHHHhCCCHHHHhCCCHHH-HhCccc-----hhh----HHHHHHHHcCCcc
Confidence 458888875 599999999999999999999999999999998653 222110 011 11223333 3333
Q ss_pred ceeeEEEEccCCcEEEEEEEEeeeeCCCCCEEEEEEEEeecc
Q 002152 831 ENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILV 872 (959)
Q Consensus 831 ~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~i~g~v~i~~DIT 872 (959)
...+..+. ++|+.+|+.++..|+.+ +|. .+++.+++||+
T Consensus 77 ~~~~~~~~-~~g~~~~~~~~~~pi~~-~g~-~~~l~~~~Di~ 115 (115)
T 3b33_A 77 TDSDVTFV-VDGRPLMLEVTVSPITW-QRQ-LMLLVEMRKID 115 (115)
T ss_dssp EEEEEEEE-ETTEEEEEEEEEEEEEE-TTE-EEEEEEEEEC-
T ss_pred cCCceEEe-cCCCEEEEEEEEEEeec-CCc-eEEEEEEEeCC
Confidence 44566666 78999999999999998 776 68889999985
No 131
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A
Probab=98.60 E-value=9.9e-07 Score=85.48 Aligned_cols=130 Identities=16% Similarity=0.123 Sum_probs=100.1
Q ss_pred CHHHHHHHHHHHHHHHhCCCeEEEEeecCCC----CeEEEEEecCCCCCCccCCccCCCCchHHHHHHHHhCCEEEEecC
Q 002152 230 DIGLLCDTVVEDVQKLTGYDRVMLYNFHDDD----HGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDC 305 (959)
Q Consensus 230 ~l~~~~~~~v~~vr~~~g~DRv~iY~F~~d~----~G~viaE~~~~~~~s~lg~~~pa~dip~~ar~ly~~~~~r~i~d~ 305 (959)
+++++++.+++.+++++|+|++.||-.+++. ..-++.-+.....+.+.|..||... + -+...+..++..+|+|+
T Consensus 1 ~~~~~L~~i~~~a~~~~~ad~~~i~l~~~~~~~~~~~l~~~a~~g~~~~~~~~~~~~~~~-g-~~g~v~~~g~~v~v~d~ 78 (149)
T 2vjw_A 1 DPATVFRLVAAEALTLTGADGTLVAVPADPDASAAEELVIVEVAGAVPAEVEASAIPVQD-N-AIGQAFRDRAPRRLDVL 78 (149)
T ss_dssp CTHHHHHHHHHHHHHHHCCSEEEEEEECC----CCSEEEEEEEEETSCGGGTTCEEESSS-S-HHHHHHHHCCCEEESCC
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEEEcCCCCCcCceEEEEEEecCChHhhcCcccCCCC-C-HHHHHhhcCceEEecCc
Confidence 4578999999999999999999999998874 3333333444444567788887643 2 23355677888888887
Q ss_pred CCCCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEeecC-CCCCCChhHHHH
Q 002152 306 HAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHT-SPRYIPFPLRYA 384 (959)
Q Consensus 306 ~~~~~~l~~~~~~~~~ldls~s~lRsvsp~h~~yl~nmgv~asl~v~i~~~~~~~~~LWGLi~~hh~-~pr~~~~~~r~~ 384 (959)
... | |++|.|++||..+| +.-|.|..++. .|+.++.+....
T Consensus 79 ~~d-------------------------~---------~~~s~l~vPL~~~~----~~~GvL~l~~~~~~~~f~~~d~~l 120 (149)
T 2vjw_A 79 DGP-------------------------G---------LGGPALVLPLRATD----TVAGVLVAVQGSGARPFTAEQLEM 120 (149)
T ss_dssp CTT-------------------------S---------CEEEEEEEEEEETT----EEEEEEEEEEETTCCCCCHHHHHH
T ss_pred ccC-------------------------C---------CCCeEEEEEEccCC----eEEEEEEEeeCCCCCCCCHHHHHH
Confidence 632 2 78999999999988 99999999998 799999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 002152 385 CEFLVQAFSLQLYME 399 (959)
Q Consensus 385 ~~~l~~~~s~~l~~~ 399 (959)
++.|+.+.++.|..+
T Consensus 121 l~~lA~~aa~al~~a 135 (149)
T 2vjw_A 121 MTGFADQAAVAWQLA 135 (149)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998888877543
No 132
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=98.59 E-value=1.4e-07 Score=102.99 Aligned_cols=123 Identities=11% Similarity=0.078 Sum_probs=103.0
Q ss_pred ccEEEEcCCCceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHHHHcCCCc---ceEEEEEEeeeeccCC
Q 002152 629 APIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEED---KNVELKLRKFELQKQH 705 (959)
Q Consensus 629 ~~I~~~D~dg~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~l~~~~~---~~~e~~~~~~~~~~dG 705 (959)
..+...+.+|+++++|+++..++||.++|++|+++. +++||++.+.+.+.+..+++++.. ...++++ +++||
T Consensus 175 ~Fitrh~~dG~~~yvs~~~~~lLGY~peELig~s~~-~~vHPdD~~~~~~~~~~~l~~~~~~~f~s~~yR~----~~kdG 249 (317)
T 4dj3_A 175 IFTTTHTPGCVFLEVDERAVPLLGYLPQDLIGTSIL-TYLHPEDRPLMVAIHQKVLKYAGHPPFEHSPVRF----CTQNG 249 (317)
T ss_dssp EEEEEECTTSBEEEECTTHHHHHSCCHHHHTTSBGG-GGBCTTTTTHHHHHHHHHHHTTTSCCEECCCEEE----ECTTS
T ss_pred ceEEEecCCCeEEEEChHHhhhcCcChHHHcCCCHH-HeECHHHHHHHHHHHHHHHHcCCCccccceEEEE----EccCC
Confidence 456778999999999999999999999999999999 999999999999988888876544 3567788 78999
Q ss_pred cEEEEEEEEEEeecC-CCCEEEEEEEee--------c-----chhhHHHHHHHHHHHHHHHHHHH
Q 002152 706 SVVYILVNACTSRDY-KNNVKGVCFVGQ--------D-----ITHEKVLMDKFIRLQGDYEAIIQ 756 (959)
Q Consensus 706 ~~~~v~v~~~pi~d~-~g~~~gvv~v~~--------D-----ITerk~~E~~L~~se~~l~~i~e 756 (959)
.++|+..+..+++|. .+++..++++.+ | +++++..+.++++.+++++.++-
T Consensus 250 ~~vwvet~~~~~~np~s~~~e~II~~h~v~~~p~~~dvf~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (317)
T 4dj3_A 250 EYVILDSSWSSFVNPWSRKVSFIIGRHKVRTSPLNEDVFATRIKKAASNDKDIAELQEQIHKLLL 314 (317)
T ss_dssp CEEEEEEEEEEEECSSSCCEEEEEEEEEECCCCSSSCTTCCCCCCCSSCCHHHHHHHHHHHHHTT
T ss_pred CEEEEEEEEEEEECCCCCcccEEEEEEEeccCCCCCCcccCCccchhccchhHHHHHHHHHHHhc
Confidence 999999999999986 466667777766 4 45667777888888888777654
No 133
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A*
Probab=98.54 E-value=3.1e-07 Score=88.26 Aligned_cols=141 Identities=11% Similarity=0.003 Sum_probs=101.1
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCCccC-CccCCCCchHHHHHHHHhCCEEEEecCC
Q 002152 228 GGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLG-IHFPANDIPQAARFLFKQNRVRMICDCH 306 (959)
Q Consensus 228 ~~~l~~~~~~~v~~vr~~~g~DRv~iY~F~~d~~G~viaE~~~~~~~s~lg-~~~pa~dip~~ar~ly~~~~~r~i~d~~ 306 (959)
+.+++++++.+++.+++++|+|++.||-+++++.-.+.+-.-.+ -+.+.. .++|..+ .-....+..++..++.|+.
T Consensus 4 ~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~l~~~~~~g~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~ 80 (153)
T 2w3g_A 4 DPDLEATLRAIVHSATSLVDARYGAMEVHDRQHRVLHFVYEGID-EETVRRIGHLPKGL--GVIGLLIEDPKPLRLDDVS 80 (153)
T ss_dssp CHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTCCEEEEEEESCC-HHHHHHHCSCCCSC--THHHHHHHSCSCEEESSGG
T ss_pred ccCHHHHHHHHHHHHHHHhCCCEEEEEEECCCCCEEEEEEecCC-HHHHHhhccCCCCC--CHHHHHHhcCCcEEecCcc
Confidence 45789999999999999999999999999976444444432111 111111 2444322 1344567778888888865
Q ss_pred CCCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEeecCCC-CCCChhHHHHH
Q 002152 307 AIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSP-RYIPFPLRYAC 385 (959)
Q Consensus 307 ~~~~~l~~~~~~~~~ldls~s~lRsvsp~h~~yl~nmgv~asl~v~i~~~~~~~~~LWGLi~~hh~~p-r~~~~~~r~~~ 385 (959)
..|--. . .+. ...++++.+++||+.+| +++|.|.+++..+ +.|+.+...++
T Consensus 81 ~~~~~~------------------~-~~~-----~~~~~~s~l~vPl~~~~----~~~Gvl~l~~~~~~~~f~~~~~~~l 132 (153)
T 2w3g_A 81 AHPASI------------------G-FPP-----YHPPMRTFLGVPVRVRD----ESFGTLYLTDKTNGQPFSDDDEVLV 132 (153)
T ss_dssp GSTTCC------------------C-CCT-----TCCCCCCEEEEEEEETT----EEEEEEEEEEETTSCCCCHHHHHHH
T ss_pred cCchhc------------------C-CCC-----cCCCCCeEEEeeEEECC----EEEEEEEEeeCCCCCCCCHHHHHHH
Confidence 433200 0 010 34689999999999988 9999999999987 89999999999
Q ss_pred HHHHHHHHHHHHHH
Q 002152 386 EFLVQAFSLQLYME 399 (959)
Q Consensus 386 ~~l~~~~s~~l~~~ 399 (959)
+.++.+++..|+..
T Consensus 133 ~~la~~~a~ai~~a 146 (153)
T 2w3g_A 133 QALAAAAGIAVANA 146 (153)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888643
No 134
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=98.54 E-value=5.5e-08 Score=88.35 Aligned_cols=108 Identities=11% Similarity=0.091 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCeeeeCCCCcEEeecHHHHHHhCC---CchhhcCCCcccccccccccccChhhHHHHH
Q 002152 742 DKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGW---MRHEVIGKMLPREIFGNFCRMKGQDMLTKFM 818 (959)
Q Consensus 742 ~~L~~se~~l~~i~e~~~~~i~~I~~~D~~g~i~~~N~a~~~l~G~---~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~ 818 (959)
+++++++..++.++++++.+ ++++|.+|+|+++|+++++++|| +.++++|+.+.. + .++.. +
T Consensus 8 ~~l~~~~~~~~~il~~~~~~---i~~~d~~g~i~~~N~~~~~~~g~~~~~~~~~~g~~~~~-~-------~~~~~---~- 72 (118)
T 2w0n_A 8 YEISTLFEQRQAMLQSIKEG---VVAVDDRGEVTLINDAAQELLNYRKSQDDEKLSTLSHS-W-------SQVVD---V- 72 (118)
T ss_dssp HHHCTTHHHHHHHHHCCCCC---CEEEBTTTBCCCBCHHHHHHHCSCTTTTTSSCCCTTCC-C-------SCTHH---H-
T ss_pred HHHHHHHHHHHHHHhhcccc---EEEECCCCcEeehhHHHHHHhCCCccChhhhhccCccc-c-------cCchh---H-
Confidence 45566677889999999854 99999999999999999999998 889999997653 2 22222 1
Q ss_pred HHHHhhhcCCCcceeeEEEEccCCcEEEEEEEEeeeeCCCCCEEEEEEEEeecc
Q 002152 819 ILLYQGITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILV 872 (959)
Q Consensus 819 ~~l~~~~~~~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~i~g~v~i~~DIT 872 (959)
.+.+.++...... . ...+| .|+.++..|+.+ +|.+.|++++++|||
T Consensus 73 ---~~~~~~~~~~~~~-~-~~~~~--~~~~~~~~p~~~-~g~~~g~v~~~~DiT 118 (118)
T 2w0n_A 73 ---SEVLRDGTPRRDE-E-ITIKD--RLLLINTVPVRS-NGVIIGAISTFRDKT 118 (118)
T ss_dssp ---HHHHHTTCCCCCC-C-EESSS--CEECCCEECCCC-SSCCCCEEECCCCCC
T ss_pred ---HHHhccCceeccE-E-EEECC--EEEEEeeceeee-CCEEEEEEEEEEeCC
Confidence 2222222222111 1 22355 467788889987 888889999999998
No 135
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=98.53 E-value=1.5e-06 Score=98.52 Aligned_cols=142 Identities=14% Similarity=0.083 Sum_probs=106.2
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCCccCCccCCCCchHHHHHHHHhCCEEEEe-cCC
Q 002152 228 GGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMIC-DCH 306 (959)
Q Consensus 228 ~~~l~~~~~~~v~~vr~~~g~DRv~iY~F~~d~~G~viaE~~~~~~~s~lg~~~pa~dip~~ar~ly~~~~~r~i~-d~~ 306 (959)
+.+++++++.+++.+++++|+||+.||.+++++..-++.-+..+. ...+.++|... .-+...+..+...+|+ |++
T Consensus 212 ~~dl~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~~~~--~~~~~~~~~~~--~~~~~v~~~~~~~~i~~d~~ 287 (398)
T 1ykd_A 212 SLDLEDTLKRVMDEAKELMNADRSTLWLIDRDRHELWTKITQDNG--STKELRVPIGK--GFAGIVAASGQKLNIPFDLY 287 (398)
T ss_dssp CCCHHHHHHHHHHHHHHHTTEEEEEEEEEETTTTEEEEEEECSSS--CEEEEEEETTS--HHHHHHHHHCCCEEECSCGG
T ss_pred cCCHHHHHHHHHHHHHHHhCcCeEEEEEEECCCCEEEEEEecCCC--ceeeeeccCCC--chhhHHhccCCeEEeccccc
Confidence 348999999999999999999999999999987544333331211 22233555432 3345678888998998 876
Q ss_pred CCCcccccccccCCccccccccccCCChhh--HHHHhhcCceeEEEEEEE-EcCCCCCceeEEEEeecCC----------
Q 002152 307 AIPVMVIQSKELKQPLCLVNSTLRSPHGCH--LQYMTNMGSIASLVMAVI-INSKDSMKLWGLVVCHHTS---------- 373 (959)
Q Consensus 307 ~~~~~l~~~~~~~~~ldls~s~lRsvsp~h--~~yl~nmgv~asl~v~i~-~~~~~~~~LWGLi~~hh~~---------- 373 (959)
..|- ...+ ..-...+++++.|+|||+ .+| +++|.|.++++.
T Consensus 288 ~~~~----------------------~~~~~~~~~~~~~~~~s~l~vPl~~~~~----~~iGvl~l~~~~~~~~~~~~~~ 341 (398)
T 1ykd_A 288 DHPD----------------------SATAKQIDQQNGYRTCSLLCMPVFNGDQ----ELIGVTQLVNKKKTGEFPPYNP 341 (398)
T ss_dssp GSTT----------------------CHHHHHHHHHHTCCCCCEEEEEEECSSS----CEEEEEEEEEECCSSCCCCCCG
T ss_pred cCcc----------------------cCcccchhhhcCCeeeeEEEEeeecCCC----CEEEEEEEEecCCccccccccc
Confidence 5432 1223 222346778999999999 587 999999999987
Q ss_pred ----------CCCCChhHHHHHHHHHHHHHHHHHHH
Q 002152 374 ----------PRYIPFPLRYACEFLVQAFSLQLYME 399 (959)
Q Consensus 374 ----------pr~~~~~~r~~~~~l~~~~s~~l~~~ 399 (959)
|+.|+.+...+++.++.++++.|+..
T Consensus 342 ~~~~~~~~~~~~~f~~~d~~ll~~la~~~a~al~na 377 (398)
T 1ykd_A 342 ETWPIAPECFQASFDRNDEEFMEAFNIQAGVALQNA 377 (398)
T ss_dssp GGTTCCCGGGCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999888644
No 136
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=98.52 E-value=1.1e-07 Score=95.85 Aligned_cols=110 Identities=13% Similarity=0.119 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHhcCccEEEEcCCCceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHHHHcCCCcceEE
Q 002152 614 SSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVE 693 (959)
Q Consensus 614 ~~~~~~l~~lie~~~~~I~~~D~dg~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e 693 (959)
+...+++..+++++++|++++|.+|+|+++|++++++||++.++++|+++. +++++.... ..+..+......
T Consensus 76 ~~~~~~l~~il~~~~~gvi~~D~~g~I~~~N~aa~~llg~~~~~~~g~~~~-~~~~~~~~~-------~~~~~~~~~~~~ 147 (190)
T 2jhe_A 76 EREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAA-QLINGFNFL-------RWLESEPQDSHN 147 (190)
T ss_dssp THHHHHHHHHHHHCSSCEEEECTTCBEEEECHHHHHHHTSCHHHHTTSBGG-GTSTTCCHH-------HHHHTCCCSCEE
T ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCCEEEEcHHHHHHhCCCHHHhcCccHH-HHhCCCCHH-------HHHhcCCCCCcc
Confidence 344567899999999999999999999999999999999999999999998 777664322 122222211122
Q ss_pred EEEEeeeeccCCcEEEEEEEEEEeecCCCC----EEEEEEEeecchhhH
Q 002152 694 LKLRKFELQKQHSVVYILVNACTSRDYKNN----VKGVCFVGQDITHEK 738 (959)
Q Consensus 694 ~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~----~~gvv~v~~DITerk 738 (959)
..+. .+|. ++.++..|+.+.+|. +.|++++++|||+++
T Consensus 148 ~~~~-----~~g~--~~~~~~~pi~~~~~~~~~~~~g~v~~~~DiTe~~ 189 (190)
T 2jhe_A 148 EHVV-----INGQ--NFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMG 189 (190)
T ss_dssp EEEE-----ETTE--EEEEEEEEETTTTEEEEEEEE-HHHHHHHHTTTC
T ss_pred eEEE-----ECCe--EEEEEEEEEEecCCCCcceEEeEEEEEeccchhc
Confidence 2221 1454 467788999875555 788889999999976
No 137
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=98.50 E-value=5.9e-07 Score=77.22 Aligned_cols=95 Identities=20% Similarity=0.352 Sum_probs=68.5
Q ss_pred cCccEEEEcCCCceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHHHHcCCCcceEEEEEEeeeeccCCc
Q 002152 627 ATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHS 706 (959)
Q Consensus 627 ~~~~I~~~D~dg~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~~~~~~~~~dG~ 706 (959)
++++++++|.+|+|+++|+++++++|++.++++|+++. ++ +.... ....+......+... ++.. .++.
T Consensus 1 ~~~~i~~~d~~g~i~~~N~~~~~l~g~~~~~~~g~~~~-~~--~~~~~-~~~~~~~~~~~~~~~--~~~~------~~~~ 68 (96)
T 3a0s_A 1 METAIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLK-DL--PDFEE-IGSVAESVFENKEPV--FLNF------YKFG 68 (96)
T ss_dssp CCCEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGG-GS--TTCHH-HHHHHHHHHHHTCCE--EEEE------EEET
T ss_pred CCceEEEEcCCCCEeehhHHHHHHhCCCHHHhcCCCHH-HC--cchHH-HHHHHHHHhccCCeE--EEEE------EcCC
Confidence 47899999999999999999999999999999999987 66 33332 223333333333222 2222 1244
Q ss_pred EEEEEEEEEEeecCCCC-EEEEEEEeec
Q 002152 707 VVYILVNACTSRDYKNN-VKGVCFVGQD 733 (959)
Q Consensus 707 ~~~v~v~~~pi~d~~g~-~~gvv~v~~D 733 (959)
.+|+.++..|+.+.+|. +.|++++++|
T Consensus 69 ~~~~~~~~~p~~~~~~~~~~g~v~~~~D 96 (96)
T 3a0s_A 69 ERYFNIRFSPFRNAKTQLLEGVIITIDD 96 (96)
T ss_dssp TEEEEEEEEEEECTTTCCEEEEEEEEEC
T ss_pred cEEEEEEEEEeEcCCCCeeeEEEEEecC
Confidence 46899999999988654 6788988877
No 138
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=98.48 E-value=1.5e-07 Score=99.74 Aligned_cols=84 Identities=15% Similarity=0.128 Sum_probs=47.8
Q ss_pred CCCEEEEEEEEeecccccHHHHHHHhHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 002152 858 EGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACE 937 (959)
Q Consensus 858 ~G~i~g~v~i~~DITerk~~Elelq~~ae~~~~ak~~fLa~iSHElRnPL~~I~g~~~LL~~~~l~e~~~~~l~~i~~~~ 937 (959)
.|....+...++|+|.++..+++++..... + -+.+.|||||||||++|.+++++|++...++...++++.|.+++
T Consensus 17 ~g~~~~~~~~~~e~~~~~~~e~~~~~~~la---a--llas~IaHELrtPL~~I~~~~elL~~~~~~~~~~~~l~~I~~~~ 91 (247)
T 4fpp_A 17 RGSHNQMTETVTETTAPASPEADVQGPDFA---A--MLAARLCHDFISPASAIVSGLDLLEDPSAQDMRDDAMNLIASSA 91 (247)
T ss_dssp --------------------------CHHH---H--HHHHHHHHHHHHHHHHHHHHHHHHHCTTCGGGHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhhHHHHH---H--HHHhccCHHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 455555667779999888777665432211 1 25678999999999999999999998777788889999999999
Q ss_pred HHHHHhhcc
Q 002152 938 RQIMTIIDG 946 (959)
Q Consensus 938 ~rl~~LI~d 946 (959)
+++..+++.
T Consensus 92 ~~~~~ll~~ 100 (247)
T 4fpp_A 92 RKLADLLQF 100 (247)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888764
No 139
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=98.45 E-value=1.2e-07 Score=100.95 Aligned_cols=84 Identities=14% Similarity=0.163 Sum_probs=67.4
Q ss_pred eecccccHHHHHHHhHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHHHHhcC--C-CCHHHHHHHHHHHHHHHHHHHhhc
Q 002152 869 QILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESS--S-ISENQRQYLETSDACERQIMTIID 945 (959)
Q Consensus 869 ~DITerk~~Elelq~~ae~~~~ak~~fLa~iSHElRnPL~~I~g~~~LL~~~--~-l~e~~~~~l~~i~~~~~rl~~LI~ 945 (959)
.|||++++.+ ..++..+.+.+|++.+||||||||++|.+++++|... . ..++.+++++.+..++.+|..+++
T Consensus 2 ~~it~~~~~~-----~l~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~ 76 (258)
T 2c2a_A 2 ENVTESKELE-----RLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLN 76 (258)
T ss_dssp CCHHHHHHHH-----HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHH-----HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677655544 2334455778999999999999999999999998752 2 234578899999999999999999
Q ss_pred c-cCcccccccee
Q 002152 946 G-MDLRCIEEGRC 957 (959)
Q Consensus 946 d-Ld~srIe~G~l 957 (959)
+ |++++++.+.+
T Consensus 77 ~ll~~~~~~~~~~ 89 (258)
T 2c2a_A 77 ELLDFSRLERKSL 89 (258)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHhhCCCc
Confidence 9 99999988754
No 140
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=98.44 E-value=4.6e-07 Score=99.91 Aligned_cols=105 Identities=10% Similarity=0.084 Sum_probs=89.2
Q ss_pred CccEEEEcCCCceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHHHHcCCCc-----ceEEEEEEeeeec
Q 002152 628 TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEED-----KNVELKLRKFELQ 702 (959)
Q Consensus 628 ~~~I~~~D~dg~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~l~~~~~-----~~~e~~~~~~~~~ 702 (959)
.+.++..|.+|+++++|+++..++||+++|++|+++. +++||++.+.+...+..++..+.. ...++++ ++
T Consensus 154 ~~fi~r~~~dG~~~yvn~~~~~lLGY~peELiG~s~~-~~vHPdD~~~~~~~~~~~l~~G~~~~~~~~s~~yR~----~~ 228 (339)
T 3rty_A 154 PKFAIRHTATGIISHVDSAAVSALGYLPQDLIGRSIM-DFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRF----LI 228 (339)
T ss_dssp CEEEEEEETTCBEEEECTTHHHHHCCCHHHHTTSBGG-GGBCGGGHHHHHHHHHHHHHHTTSTTCCCBCCCEEE----EC
T ss_pred ceEEEEECCCCeEEEcChhhhcccCCCHHHHcCCcHH-HEECHHHHHHHHHHHHHHHHcCCcccccccceEEEE----Ec
Confidence 4678888999999999999999999999999999999 999999999888888887764432 3457787 78
Q ss_pred cCCcEEEEEEEEEEeecCC-CCEEEEEEEeecchhh
Q 002152 703 KQHSVVYILVNACTSRDYK-NNVKGVCFVGQDITHE 737 (959)
Q Consensus 703 ~dG~~~~v~v~~~pi~d~~-g~~~gvv~v~~DITer 737 (959)
++|.++|+..+..+++|.. +++..++++.+.|+..
T Consensus 229 kdG~~vWlet~~~~~~np~s~~~~~II~~h~vi~~p 264 (339)
T 3rty_A 229 QNGCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQGP 264 (339)
T ss_dssp TTSCEEEEEEEEEEEECTTTCSEEEEEEEEEEEECC
T ss_pred cCCCEEEEEEEEEEEECCCCCCeeEEEEEEEECCCC
Confidence 9999999999999999875 5677788887766654
No 141
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=98.42 E-value=3.6e-07 Score=102.65 Aligned_cols=113 Identities=11% Similarity=0.119 Sum_probs=81.9
Q ss_pred HHHHHHHHhcCCCCCCeeeeCCCCcEEeecHHHHHHhCCCchhhcCCCcccccccccccccChhhHHHHHHHHHhhhcCC
Q 002152 749 GDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQ 828 (959)
Q Consensus 749 ~~l~~i~e~~~~~i~~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l~~~~~~~ 828 (959)
.++++++++++. +|+++|.+|+|++||++ ++++ ++.++++|+++.. +++ +.... ....+...+..+
T Consensus 239 ~~l~~IL~~l~d---gIivvD~~g~I~~~N~a-e~i~-~~~~e~iGr~v~~-~~p-------~~~~~-~~~~l~~~l~~g 304 (369)
T 3cax_A 239 EELKAIFEALPV---DVTFIDKDDRVRFFSPG-ERIF-TRTPSVLGRPVQL-CHP-------PKSVY-VVNKILKAFKEG 304 (369)
T ss_dssp HHHHHHHHHSSS---EEEEECTTSBEEEECCS-SCSS-CCCGGGTTCBTTT-SSC-------GGGHH-HHHHHHHHHHHT
T ss_pred HHHHHHHHhCCC---cEEEECCCCcEEEEcCH-HHcc-CChHHHcCCcHHH-HCC-------hhhHH-HHHHHHHHHHcC
Confidence 356789999985 59999999999999999 9999 9999999998653 222 22222 222233333333
Q ss_pred CcceeeEEEEccCCcEEEEEEEEeeeeCCCCCEEEEEEEEeecccccHHH
Q 002152 829 GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPA 878 (959)
Q Consensus 829 ~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~i~g~v~i~~DITerk~~E 878 (959)
.....++.+ ..+| +++.++..|++|.+|+++|++.+++|||+.++.+
T Consensus 305 ~~~~~~~~~-~~~g--~~v~v~~~PI~d~~G~~~G~v~v~~DITe~~~le 351 (369)
T 3cax_A 305 RKKEATFWL-RLRE--KYVYIKYVPLFNEKGEYIGTLEMTMDIAPYKKIE 351 (369)
T ss_dssp SCSCEEEEE-EETT--EEEEEEEEEEECTTSCEEEEEEEEEECHHHHTCC
T ss_pred CceEEEEEE-eeCC--EEEEEEEEEEECCCCCEEEEEEEEEcCHHHHHHH
Confidence 344444433 3456 5788999999999999999999999999865543
No 142
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=98.42 E-value=9e-07 Score=81.97 Aligned_cols=102 Identities=14% Similarity=0.156 Sum_probs=72.8
Q ss_pred HHHHHhcCccEEEEcCCCceehhcHHHHHHhCCCcccccCCCccccccCC-CchHHHHHHHHHHHcCCCcceEEEEEEee
Q 002152 621 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHE-ESQGAVENLICRALLGEEDKNVELKLRKF 699 (959)
Q Consensus 621 ~~lie~~~~~I~~~D~dg~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~-~~~~~~~~~l~~~l~~~~~~~~e~~~~~~ 699 (959)
..++++++.|++++|.+|+|++||..+++++|+++++++|++++ +.+.+ .....+...+......+. ...++.+.
T Consensus 20 ~~~ld~l~~Gii~lD~~g~I~~~N~~~e~~sG~~~~eviGk~~f-~~~~~~~~~~~f~~rf~~~~~~g~-l~~~~~~v-- 95 (125)
T 1nwz_A 20 DGQLDGLAFGAIQLDGDGNILQYNAAEGDITGRDPKQVIGKNFF-KDVAPCTDSPEFYGKFKEGVASGN-LNTMFEYT-- 95 (125)
T ss_dssp HHHHTTCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCC-CCCCGGGCSTTTHHHHHHHHHHTC-CEEEEEEE--
T ss_pred HHHHhccCceEEEECCCCEEEEEHHHHHHHhCCCHHHHcCCchh-hhccchhcccHHHHHHHHHHhcCc-eeEEEEEE--
Confidence 45799999999999999999999999999999999999999998 54433 333444444444444333 33344432
Q ss_pred eeccCCcEEEEEEEEEEeecCCCCEEEEEE
Q 002152 700 ELQKQHSVVYILVNACTSRDYKNNVKGVCF 729 (959)
Q Consensus 700 ~~~~dG~~~~v~v~~~pi~d~~g~~~gvv~ 729 (959)
.+.+|++ +.++..+..+++|...+++.
T Consensus 96 -~~~~~~p--~~v~i~l~~~~~~~~~~i~v 122 (125)
T 1nwz_A 96 -FDYQMTP--TKVKVHMKKALSGDSYWVFV 122 (125)
T ss_dssp -ECTTSCC--EEEEEEEEECSSSSEEEEEE
T ss_pred -EcCCCCE--EEEEEEEEEcCCCCEEEEEE
Confidence 3677885 45555666677888877653
No 143
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=98.39 E-value=1.2e-06 Score=81.35 Aligned_cols=100 Identities=13% Similarity=0.149 Sum_probs=72.1
Q ss_pred HHHhcCccEEEEcCCCceehhcHHHHHHhCCCcccccCCCccccccCC-CchHHHHHHHHHHHcCCCcceEEEEEEeeee
Q 002152 623 LIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHE-ESQGAVENLICRALLGEEDKNVELKLRKFEL 701 (959)
Q Consensus 623 lie~~~~~I~~~D~dg~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~-~~~~~~~~~l~~~l~~~~~~~~e~~~~~~~~ 701 (959)
++++++.|++++|.+|+|++||.+++++.|+++++++|++++ +.+.+ .....+...+......+. ...++.+. .
T Consensus 27 ~ld~l~~GiivlD~dg~I~~~N~~~e~isG~s~eeviGk~~f-~~~~p~~~~~~f~grf~~~~~~G~-l~~~~~yv---~ 101 (129)
T 1mzu_A 27 EFDALPVGAIQVDGSGVIHRYNRTESRLSGRIPERVIGRNFF-TEVAPCTNIPAFSGRFMDGVTSGT-LDARFDFV---F 101 (129)
T ss_dssp TGGGCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCC-CCCCGGGCSTTTHHHHHHHHHTSC-CEEEEEEE---E
T ss_pred HHhccCceEEEECCCCeEEEEHHHHHHHhCCCHHHHcCCchh-hhccchhcccHHHHHHHHHHhcCc-eeEEEEEE---E
Confidence 589999999999999999999999999999999999999998 54433 444444445555554433 33344332 3
Q ss_pred ccCCcEEEEEEEEEEeecCCCCEEEEEE
Q 002152 702 QKQHSVVYILVNACTSRDYKNNVKGVCF 729 (959)
Q Consensus 702 ~~dG~~~~v~v~~~pi~d~~g~~~gvv~ 729 (959)
+.+|++ +.++.....+.+|..++++.
T Consensus 102 ~~~~~p--~~v~i~l~~~~~~~~~~i~v 127 (129)
T 1mzu_A 102 DFQMAP--VRVQIRMQNAGVPDRYWIFV 127 (129)
T ss_dssp ECSSCE--EEEEEEEEECSSTTEEEEEE
T ss_pred cCCCCE--EEEEEEEEEcCCCCEEEEEE
Confidence 677885 55555666677888877653
No 144
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=98.38 E-value=3.1e-06 Score=103.29 Aligned_cols=140 Identities=11% Similarity=0.158 Sum_probs=107.8
Q ss_pred CCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCC--CCccCCccCCCCchHHHHHHHHhCCEEEEecCC
Q 002152 229 GDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDL--EPYLGIHFPANDIPQAARFLFKQNRVRMICDCH 306 (959)
Q Consensus 229 ~~l~~~~~~~v~~vr~~~g~DRv~iY~F~~d~~G~viaE~~~~~~--~s~lg~~~pa~dip~~ar~ly~~~~~r~i~d~~ 306 (959)
.+++++++.+++.+++++|+||+.||-+++ |+.+..+...+. +...+..+|... .-+...+..++...|+|+.
T Consensus 195 ~dl~~ll~~i~~~~~~~l~ad~~~i~L~d~---~~l~~~~~~g~~~~~~~~~~~~~~~~--gi~g~v~~~g~~v~i~d~~ 269 (691)
T 3ibj_A 195 DDVSVLLQEIITEARNLSNAEICSVFLLDQ---NELVAKVFDGGVVDDESYEIRIPADQ--GIAGHVATTGQILNIPDAY 269 (691)
T ss_dssp SCTTTHHHHHHHHHHHHHTEEEEEEEEECS---SEEEEECCSSSCCSSCCCEEEEETTS--HHHHHHHHHCSCEEESCST
T ss_pred ccHHHHHHHHHHHHHHHhCCCeEEEEEEeC---CeEEEEeecCCcccccccceeccCCC--CHHHHHHHhCCEEEecCcc
Confidence 489999999999999999999999999998 677777665443 234455666543 3455678889999999987
Q ss_pred CCCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEc-CCCCCceeEEEEeecCCC-CCCChhHHHH
Q 002152 307 AIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN-SKDSMKLWGLVVCHHTSP-RYIPFPLRYA 384 (959)
Q Consensus 307 ~~~~~l~~~~~~~~~ldls~s~lRsvsp~h~~yl~nmgv~asl~v~i~~~-~~~~~~LWGLi~~hh~~p-r~~~~~~r~~ 384 (959)
..|- -++........++++.|++||+.+ | ++||.|..+++.+ +.|+.+...+
T Consensus 270 ~d~~----------------------~~~~~~~~~g~~~rS~L~vPL~~~~g----~viGVL~l~~~~~~~~f~~~d~~l 323 (691)
T 3ibj_A 270 AHPL----------------------FYRGVDDSTGFRTRNILCFPIKNENQ----EVIGVAELVNKINGPWFSKFDEDL 323 (691)
T ss_dssp TSTT----------------------C------CCSCCCCCEEEEECCCSSS----CCCEEEEEEEESSSSSCCTTTTHH
T ss_pred cCcc----------------------ccchhhcccCCeeeeEEEEeEECCCC----CEEEEEEEEECCCCCCCCHHHHHH
Confidence 6543 012222234467999999999987 7 9999999999985 4799999999
Q ss_pred HHHHHHHHHHHHHHH
Q 002152 385 CEFLVQAFSLQLYME 399 (959)
Q Consensus 385 ~~~l~~~~s~~l~~~ 399 (959)
++.+|.++++.|+.+
T Consensus 324 l~~lA~~~aiAIena 338 (691)
T 3ibj_A 324 ATAFSIYCGISIAHS 338 (691)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998754
No 145
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus}
Probab=98.35 E-value=6.1e-06 Score=82.52 Aligned_cols=154 Identities=12% Similarity=0.150 Sum_probs=112.2
Q ss_pred HHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHHHHhCCCeEEEEeecCCCC-eEEEEEec--CCC--C-----CCccCCcc
Q 002152 213 QKLAVSAISRLQALPGG-DIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDH-GEVVSEIR--RSD--L-----EPYLGIHF 281 (959)
Q Consensus 213 ~~~~~~~~~~l~~~~~~-~l~~~~~~~v~~vr~~~g~DRv~iY~F~~d~~-G~viaE~~--~~~--~-----~s~lg~~~ 281 (959)
...+.++...|.+ +. +++++++.+++.+++++|+||..||-++++.. .+.++... ..+ + ....+.++
T Consensus 6 l~~L~eis~~l~~--~~~dl~~ll~~il~~~~~~~~a~~~~i~L~d~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~ 83 (180)
T 3dba_A 6 CNILFELLTEIQD--EAGSMEKIVHKTLQRLSQLLAADRCSMFICRSRNGIPEVATRLLNVTPTSKFEDNLVNPDKETVF 83 (180)
T ss_dssp HHHHHHHHTTSCS--SSSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEETTEEEEEEEEEEECTTCCHHHHBCCGGGCCEE
T ss_pred HHHHHHHHHHHHH--hhhcHHHHHHHHHHHHHHHhCcceEEEEEEeCCCCcceeeeeeeccccCccchhhccccccceee
Confidence 3444555666666 67 99999999999999999999999999998864 56655432 222 2 23345566
Q ss_pred CCCCchHHHHHHHHhCCEEEEecCCCCCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCC
Q 002152 282 PANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSM 361 (959)
Q Consensus 282 pa~dip~~ar~ly~~~~~r~i~d~~~~~~~l~~~~~~~~~ldls~s~lRsvsp~h~~yl~nmgv~asl~v~i~~~~~~~~ 361 (959)
|... --+...+..+...+|+|++..|- . +.........++++-|++||+.+|
T Consensus 84 ~~~~--gi~g~v~~tg~~v~i~d~~~d~~--f--------------------~~~~~~~~~~~~~S~L~vPl~~~~---- 135 (180)
T 3dba_A 84 PLDI--GIAGWVAHTKKFFNIPDVKKNNH--F--------------------SDYLDKKTGYTTVNMMAIPITQGK---- 135 (180)
T ss_dssp CTTS--SHHHHHHHHTCCEEESCGGGCTT--C--------------------CCHHHHHHCCCCCCEEEEEEEETT----
T ss_pred eCCC--CHHHHHHHhCCEEEecCCCCCcc--c--------------------ChhhccccCccccEEEEEEeccCC----
Confidence 6542 23456677788889999876542 0 001122345678999999999988
Q ss_pred ceeEEEEeecCCC-CCCChhHHHHHHHHHHHHHHHH
Q 002152 362 KLWGLVVCHHTSP-RYIPFPLRYACEFLVQAFSLQL 396 (959)
Q Consensus 362 ~LWGLi~~hh~~p-r~~~~~~r~~~~~l~~~~s~~l 396 (959)
++.|.|.+.+..+ +.++.+....++.|+.++++.|
T Consensus 136 ~viGVL~l~n~~~~~~Ft~~d~~lL~~lA~~aa~~i 171 (180)
T 3dba_A 136 EVLAVVMALNKLNASEFSKEDEEVFKKYLNFISLVL 171 (180)
T ss_dssp EEEEEEEEEEESSSSSCCHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999998875 4889999999999998888766
No 146
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=98.32 E-value=1.7e-06 Score=74.26 Aligned_cols=93 Identities=15% Similarity=0.199 Sum_probs=64.6
Q ss_pred CCeeeeCCCCcEEeecHHHHHHhCCCchhhcCCCcccccccccccccChhhHHHHHHHHHhhhcCCCcceeeEEEEccCC
Q 002152 763 PPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQG 842 (959)
Q Consensus 763 ~~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l~~~~~~~~~~~~e~~~~~~dG 842 (959)
++++++|.+|+++++|+++++++|++.++++|+.+.. + ++. ..+...+.+.+..+... ++.. .+|
T Consensus 3 ~~i~~~d~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~--------~--~~~-~~~~~~~~~~~~~~~~~--~~~~--~~~ 67 (96)
T 3a0s_A 3 TAIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKD--------L--PDF-EEIGSVAESVFENKEPV--FLNF--YKF 67 (96)
T ss_dssp CEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGG--------S--TTC-HHHHHHHHHHHHHTCCE--EEEE--EEE
T ss_pred ceEEEEcCCCCEeehhHHHHHHhCCCHHHhcCCCHHH--------C--cch-HHHHHHHHHHhccCCeE--EEEE--EcC
Confidence 4699999999999999999999999999999997653 1 111 11222233333333232 2222 244
Q ss_pred cEEEEEEEEeeeeCCCCC-EEEEEEEEee
Q 002152 843 QFVEVALTASRRTDAEGK-VIGCFCFMQI 870 (959)
Q Consensus 843 ~~~~v~~~~~pi~d~~G~-i~g~v~i~~D 870 (959)
..+|+.++..|+.+.+|. +.|++++++|
T Consensus 68 ~~~~~~~~~~p~~~~~~~~~~g~v~~~~D 96 (96)
T 3a0s_A 68 GERYFNIRFSPFRNAKTQLLEGVIITIDD 96 (96)
T ss_dssp TTEEEEEEEEEEECTTTCCEEEEEEEEEC
T ss_pred CcEEEEEEEEEeEcCCCCeeeEEEEEecC
Confidence 457899999999988665 6789988876
No 147
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=98.30 E-value=1.9e-06 Score=79.72 Aligned_cols=101 Identities=17% Similarity=0.235 Sum_probs=69.8
Q ss_pred HHHHHhcCCCCCCeeeeCCCCcEEeecHHHHHHhCCCchhhcCCCcccccccccccccChhhHHHHHHHHHhhhcCCCcc
Q 002152 752 EAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQGTE 831 (959)
Q Consensus 752 ~~i~e~~~~~i~~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l~~~~~~~~~~ 831 (959)
..++++++. |++++|.+|+|++||.++++++||++++++|+++.+.+.+. ...+.- ...+.+.+..+. .
T Consensus 20 ~~~ld~l~~---Gii~lD~~g~I~~~N~~~e~~sG~~~~eviGk~~f~~~~~~---~~~~~f----~~rf~~~~~~g~-l 88 (125)
T 1nwz_A 20 DGQLDGLAF---GAIQLDGDGNILQYNAAEGDITGRDPKQVIGKNFFKDVAPC---TDSPEF----YGKFKEGVASGN-L 88 (125)
T ss_dssp HHHHTTCSS---EEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGG---GCSTTT----HHHHHHHHHHTC-C
T ss_pred HHHHhccCc---eEEEECCCCEEEEEHHHHHHHhCCCHHHHcCCchhhhccch---hcccHH----HHHHHHHHhcCc-e
Confidence 346888874 59999999999999999999999999999999986544331 112222 223333333332 4
Q ss_pred eeeEEE-EccCCcEEEEEEEEeeeeCCCCCEEEEE
Q 002152 832 NFPFGF-FNRQGQFVEVALTASRRTDAEGKVIGCF 865 (959)
Q Consensus 832 ~~e~~~-~~~dG~~~~v~~~~~pi~d~~G~i~g~v 865 (959)
..++.+ .+++|+ ++.++.....+++|..++++
T Consensus 89 ~~~~~~v~~~~~~--p~~v~i~l~~~~~~~~~~i~ 121 (125)
T 1nwz_A 89 NTMFEYTFDYQMT--PTKVKVHMKKALSGDSYWVF 121 (125)
T ss_dssp EEEEEEEECTTSC--CEEEEEEEEECSSSSEEEEE
T ss_pred eEEEEEEEcCCCC--EEEEEEEEEEcCCCCEEEEE
Confidence 445544 488998 55556666778888887665
No 148
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0
Probab=98.29 E-value=6e-05 Score=74.10 Aligned_cols=146 Identities=10% Similarity=0.084 Sum_probs=106.7
Q ss_pred HHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCCccCCccCCCCchHHHH
Q 002152 213 QKLAVSAISRL-QALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAAR 291 (959)
Q Consensus 213 ~~~~~~~~~~l-~~~~~~~l~~~~~~~v~~vr~~~g~DRv~iY~F~~d~~G~viaE~~~~~~~s~lg~~~pa~dip~~ar 291 (959)
|..+..-++++ .. ..|+.+.++.++..+.+.++++|+.+|-+++++.--++.-.... . -..+||-.. --+-
T Consensus 15 ~~~ll~~i~~ll~~--~~dl~~~L~~v~~~l~~~l~~~~~~iyL~d~~~~~L~l~a~~G~--~--~~~~i~~ge--Gi~G 86 (167)
T 3mmh_A 15 YREVLPQIESVVAD--ETDWVANLANTAAVLKEAFGWFWVGFYLVDTRSDELVLAPFQGP--L--ACTRIPFGR--GVCG 86 (167)
T ss_dssp HHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHHHCCSEEEEEEEETTTTEEEEEEEESS--C--CCSEEETTS--HHHH
T ss_pred HHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHHcCCcEEEEEEEECCCCEEEEEEeccc--c--cceEeccCC--ChHH
Confidence 33333334444 44 56999999999999999999999999999988765554443321 1 123454332 2344
Q ss_pred HHHHhCCEEEEecCCCCCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEeec
Q 002152 292 FLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHH 371 (959)
Q Consensus 292 ~ly~~~~~r~i~d~~~~~~~l~~~~~~~~~ldls~s~lRsvsp~h~~yl~nmgv~asl~v~i~~~~~~~~~LWGLi~~hh 371 (959)
.-+..++.-+|+|+...|--+ +| ..+++|-++|||+.+| +++|.|.+.+
T Consensus 87 ~v~~~g~~~~v~Dv~~~p~~~---------------------~~------~~~~~S~i~vPi~~~g----~viGVL~i~s 135 (167)
T 3mmh_A 87 QAWAKGGTVVVGDVDAHPDHI---------------------AC------SSLSRSEIVVPLFSDG----RCIGVLDADS 135 (167)
T ss_dssp HHHHHTSCEEESCGGGSTTCC---------------------CS------STTCCEEEEEEEEETT----EEEEEEEEEE
T ss_pred HHHhCCcEEEECCcccCcchh---------------------hc------CccCCeEEEEEeccCC----EEEEEEEEec
Confidence 557788899999988655311 11 2368999999999988 9999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHH
Q 002152 372 TSPRYIPFPLRYACEFLVQAFSLQLY 397 (959)
Q Consensus 372 ~~pr~~~~~~r~~~~~l~~~~s~~l~ 397 (959)
..|+.++.+...+++.++.+++..+.
T Consensus 136 ~~~~~F~~~d~~~L~~lA~~la~~i~ 161 (167)
T 3mmh_A 136 EHLAQFDETDALYLGELAKILEKRFE 161 (167)
T ss_dssp SSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888877664
No 149
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=98.28 E-value=2.7e-06 Score=78.91 Aligned_cols=100 Identities=17% Similarity=0.199 Sum_probs=69.7
Q ss_pred HHHHhcCCCCCCeeeeCCCCcEEeecHHHHHHhCCCchhhcCCCcccccccccccccChhhHHHHHHHHHhhhcCCCcce
Q 002152 753 AIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQGTEN 832 (959)
Q Consensus 753 ~i~e~~~~~i~~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l~~~~~~~~~~~ 832 (959)
.++++++. |++++|.+|+|++||.++++++||++++++|+++.+.+.+. ...+. +...+.+.+..+. ..
T Consensus 26 ~~ld~l~~---GiivlD~dg~I~~~N~~~e~isG~s~eeviGk~~f~~~~p~---~~~~~----f~grf~~~~~~G~-l~ 94 (129)
T 1mzu_A 26 AEFDALPV---GAIQVDGSGVIHRYNRTESRLSGRIPERVIGRNFFTEVAPC---TNIPA----FSGRFMDGVTSGT-LD 94 (129)
T ss_dssp TTGGGCSS---EEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGG---GCSTT----THHHHHHHHHTSC-CE
T ss_pred HHHhccCc---eEEEECCCCeEEEEHHHHHHHhCCCHHHHcCCchhhhccch---hcccH----HHHHHHHHHhcCc-ee
Confidence 35788774 59999999999999999999999999999999986544331 11122 2333444444333 55
Q ss_pred eeEEE-EccCCcEEEEEEEEeeeeCCCCCEEEEE
Q 002152 833 FPFGF-FNRQGQFVEVALTASRRTDAEGKVIGCF 865 (959)
Q Consensus 833 ~e~~~-~~~dG~~~~v~~~~~pi~d~~G~i~g~v 865 (959)
.++.+ .+++|+ ++.++.....+.+|..++++
T Consensus 95 ~~~~yv~~~~~~--p~~v~i~l~~~~~~~~~~i~ 126 (129)
T 1mzu_A 95 ARFDFVFDFQMA--PVRVQIRMQNAGVPDRYWIF 126 (129)
T ss_dssp EEEEEEEECSSC--EEEEEEEEEECSSTTEEEEE
T ss_pred EEEEEEEcCCCC--EEEEEEEEEEcCCCCEEEEE
Confidence 45544 488888 55555666777888887665
No 150
>2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A
Probab=97.57 E-value=1.2e-07 Score=103.35 Aligned_cols=121 Identities=17% Similarity=0.155 Sum_probs=85.1
Q ss_pred HHHHhcCccEEEEcCCCceehhcHHHHHHhC---CCcccccCCCccccccCCC---chH--HHHHHHHHHHcC-CCcceE
Q 002152 622 RLIETATAPIFGVDSSGTINGWNAKVAELTG---LPASEAMGKSLIDEVVHEE---SQG--AVENLICRALLG-EEDKNV 692 (959)
Q Consensus 622 ~lie~~~~~I~~~D~dg~iv~~N~~~~~l~G---~~~eeliGk~~~~~l~~~~---~~~--~~~~~l~~~l~~-~~~~~~ 692 (959)
.+++++++||+++|.+|+|+++|++++++|| ++ ++++|+++. +++... ... .+...+..++.+ +.....
T Consensus 174 ~~~~~~~dGIivvD~~G~Ii~~N~aA~~ll~~lG~~-~~~iGk~l~-el~~~~~~~~~~~~~~~~~l~~vl~~~~~~~~~ 251 (305)
T 2ykf_A 174 RSSPRAGDGFIRLDVDGVVSYASPNALSAYHRMGLT-TELEGVNLI-DATRPLISDPFEAHEVDEHVQDLLAGDGKGMRM 251 (305)
Confidence 3567999999999999999999999999985 44 688999987 766543 110 122222334443 322222
Q ss_pred EEEEEeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEeecchhhHHHHHHHHHHHHHHHHH
Q 002152 693 ELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAI 754 (959)
Q Consensus 693 e~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~~~gvv~v~~DITerk~~E~~L~~se~~l~~i 754 (959)
++.. ...++.++..|+.+ +|++.|++.+++|||+.++.|++|+......+.|
T Consensus 252 ei~~---------~~~~l~v~~~Pi~~-~g~~~G~Vvv~rDITE~~~lE~eL~~K~~~IrEI 303 (305)
T 2ykf_A 252 EVDA---------GGATVLLRTLPLVV-AGRNVGAAILIRDVTEVKRRDRALISKDATIREI 303 (305)
Confidence 2111 23567888899986 5788899999999999999999997665555443
No 151
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=98.24 E-value=1.2e-06 Score=88.16 Aligned_cols=107 Identities=10% Similarity=0.094 Sum_probs=75.1
Q ss_pred HHHHHHHHHHhcCCCCCCeeeeCCCCcEEeecHHHHHHhCCCchhhcCCCcccccccccccccChhhHHHHHHHHHhhhc
Q 002152 747 LQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGIT 826 (959)
Q Consensus 747 se~~l~~i~e~~~~~i~~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l~~~~~ 826 (959)
....++.++++++. +++.+|.+|+|+++|+++++++|++.++++|+++.. +++ +... ...+..
T Consensus 78 ~~~~l~~il~~~~~---gvi~~D~~g~I~~~N~aa~~llg~~~~~~~g~~~~~-~~~-------~~~~---~~~~~~--- 140 (190)
T 2jhe_A 78 EHLALSALLEALPE---PVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQ-LIN-------GFNF---LRWLES--- 140 (190)
T ss_dssp HHHHHHHHHHHCSS---CEEEECTTCBEEEECHHHHHHHTSCHHHHTTSBGGG-TST-------TCCH---HHHHHT---
T ss_pred HHHHHHHHHHhCCC---cEEEEcCCCCEEEEcHHHHHHhCCCHHHhcCccHHH-HhC-------CCCH---HHHHhc---
Confidence 34567899999985 499999999999999999999999999999998653 222 2221 111221
Q ss_pred CC-CcceeeEEEEccCCcEEEEEEEEeeeeCCCCC----EEEEEEEEeeccccc
Q 002152 827 GQ-GTENFPFGFFNRQGQFVEVALTASRRTDAEGK----VIGCFCFMQILVPDL 875 (959)
Q Consensus 827 ~~-~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~----i~g~v~i~~DITerk 875 (959)
+. .....++.+ +|. ++.++..|+.+.+|. +.|++++++|||+.+
T Consensus 141 ~~~~~~~~~~~~---~g~--~~~~~~~pi~~~~~~~~~~~~g~v~~~~DiTe~~ 189 (190)
T 2jhe_A 141 EPQDSHNEHVVI---NGQ--NFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMG 189 (190)
T ss_dssp CCCSCEEEEEEE---TTE--EEEEEEEEETTTTEEEEEEEE-HHHHHHHHTTTC
T ss_pred CCCCCcceEEEE---CCe--EEEEEEEEEEecCCCCcceEEeEEEEEeccchhc
Confidence 21 223333332 664 466778899876666 788888999999875
No 152
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=98.23 E-value=3e-06 Score=92.55 Aligned_cols=104 Identities=12% Similarity=0.016 Sum_probs=88.2
Q ss_pred CccEEEEcCCCceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHHHHcC-CCcc-eEEEEEEeeeeccCC
Q 002152 628 TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG-EEDK-NVELKLRKFELQKQH 705 (959)
Q Consensus 628 ~~~I~~~D~dg~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~l~~-~~~~-~~e~~~~~~~~~~dG 705 (959)
...+...+.+|+++++|+++..++||.++|++|+++. +++||++.+.+.+.+..++++ +... ..++++ +++||
T Consensus 176 ~~Fitrh~~dG~~~yvd~~~~~lLGY~peELig~s~~-~~vHPdD~~~~~~~~~~~l~~~g~~~~~~~yR~----~~kdG 250 (320)
T 4dj2_A 176 RIFTTRHTPSCLFQDVDERAAPLLGYLPQDLLGAPVL-LFLHPEDRPLMLAIHKKILQLAGQPFDHSPIRF----CARNG 250 (320)
T ss_dssp CEEEEEECTTCBEEEECTTHHHHHSCCHHHHTTSBGG-GGBCGGGHHHHHHHHHHHTTSSSCCEECCCEEE----ECSSS
T ss_pred ceEEEEecCCceEEEcCcceeccCCcChHHHcCCcHH-HhCCHHHHHHHHHHHHHHHhcCCCcccceEEEE----EccCC
Confidence 3467778999999999999999999999999999999 999999999999999888874 3333 357777 78999
Q ss_pred cEEEEEEEEEEeecC-CCCEEEEEEEeecchh
Q 002152 706 SVVYILVNACTSRDY-KNNVKGVCFVGQDITH 736 (959)
Q Consensus 706 ~~~~v~v~~~pi~d~-~g~~~gvv~v~~DITe 736 (959)
.++|+.....++++. .+++..++++-+-++.
T Consensus 251 ~~vwvet~~~~~~np~s~~~e~II~~h~v~~g 282 (320)
T 4dj2_A 251 EYVTMDTSWAGFVHPWSRKVAFVLGRHKVRTA 282 (320)
T ss_dssp CEEEEECEEEEEECTTTCSEEEEEEEEEESSC
T ss_pred CEEEEEEEEEEEECCCCCCccEEEEEEEEccC
Confidence 999999999999886 5677788887765554
No 153
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=98.22 E-value=4.2e-06 Score=90.99 Aligned_cols=103 Identities=4% Similarity=-0.018 Sum_probs=87.3
Q ss_pred ccEEEEcCCCceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHHHHcCCC-cce-EEEEEEeeeeccCCc
Q 002152 629 APIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEE-DKN-VELKLRKFELQKQHS 706 (959)
Q Consensus 629 ~~I~~~D~dg~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~l~~~~-~~~-~e~~~~~~~~~~dG~ 706 (959)
..+...+.+|+++++|+++..++||.++|++|+++. +++||++...+.+.+..+++++. ... .++++ ++++|.
T Consensus 166 ~Fitrh~~dG~~~yvd~~~~~lLGY~peELig~s~~-~~iHpdD~~~~~~~~~~~l~~~g~~~~~~~yR~----~~kdG~ 240 (309)
T 3gdi_A 166 IFTTTHTPNCLFQAVDERAVPLLGYLPQDLIETPVL-VQLHPSDRPLMLAIHKKILQAGGQPFDYSPIRF----RTRNGE 240 (309)
T ss_dssp EEEEEECTTCBEEEECTTHHHHHSCCHHHHTTSBHH-HHBCTTSHHHHHHHHHHHHHTTTCCEEEEEEEE----ECTTSC
T ss_pred eEEEEecCCCeEEEECcccccccCcCHHHHcCCCHH-HhCCHHHHHHHHHHHHHHHhcCCceeeceEEEE----EccCCC
Confidence 456778999999999999999999999999999999 99999999999888888887543 333 46777 789999
Q ss_pred EEEEEEEEEEeecC-CCCEEEEEEEeecchh
Q 002152 707 VVYILVNACTSRDY-KNNVKGVCFVGQDITH 736 (959)
Q Consensus 707 ~~~v~v~~~pi~d~-~g~~~gvv~v~~DITe 736 (959)
++|++....++.+. .+++..++++.+-++.
T Consensus 241 ~vwvet~~~~~~np~s~~~e~ii~~h~v~~g 271 (309)
T 3gdi_A 241 YITLDTSWSSFINPWSRKISFIIGRHKVRVG 271 (309)
T ss_dssp EEEEEEEEEEEECTTTCCEEEEEEEEEEEEC
T ss_pred EEEEEEEEEEEECCCCCcccEEEEEEEEccC
Confidence 99999999999886 5677788887766554
No 154
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=98.20 E-value=1.8e-07 Score=117.14 Aligned_cols=156 Identities=13% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeE--EEEE--ecCCCC--C--CccCCccCCCC
Q 002152 214 KLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGE--VVSE--IRRSDL--E--PYLGIHFPAND 285 (959)
Q Consensus 214 ~~~~~~~~~l~~~~~~~l~~~~~~~v~~vr~~~g~DRv~iY~F~~d~~G~--viaE--~~~~~~--~--s~lg~~~pa~d 285 (959)
..+.++...|.+ +.+++++++.+++.+++++|+||+.||.++++..|. .++. ....+. + +..+..||...
T Consensus 153 ~~L~eis~~L~~--~ldl~~ll~~il~~l~~~l~ad~~~I~L~d~~~~~~~~lv~~~f~~~~G~~~~~~~~~~~~~p~~~ 230 (878)
T 3bjc_A 153 SRLLELVKDISS--HLDVTALCHKIFLHIHGLISADRYSLFLVCEDSSNDKFLISRLFDVAEGSTLEEVSNNCIRLEWNK 230 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhh--cCCHHHHHHHHHHHHHHHhCCCeEEEEEEeCCCCCceeEEeeecccccCccccccCCcceeeeCCc
Confidence 344556666766 679999999999999999999999999999997643 3321 111111 1 23455555431
Q ss_pred chHHHHHHHHhCCEEEEecCCCCCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEE-cCCCCCcee
Q 002152 286 IPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVII-NSKDSMKLW 364 (959)
Q Consensus 286 ip~~ar~ly~~~~~r~i~d~~~~~~~l~~~~~~~~~ldls~s~lRsvsp~h~~yl~nmgv~asl~v~i~~-~~~~~~~LW 364 (959)
--+...+..+..-.|+|+...|- -+.........++++.|++||+. +| ++|
T Consensus 231 --gi~g~v~~~g~pv~I~D~~~dp~----------------------f~~~~~~~~~~~~~S~L~vPL~~~~g----~vi 282 (878)
T 3bjc_A 231 --GIVGHVAALGEPLNIKDAYEDPR----------------------FNAEVDQITGYKTQSILCMPIKNHRE----EVV 282 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --cHHHHHHhcCceEEeCCcccCcc----------------------cccccccccCCccceEEEEeeEcCCC----CEE
Confidence 12334556677777777765432 01122223456789999999998 77 999
Q ss_pred EEEEeecCCCC---CCChhHHHHHHHHHHHHHHHHHHH
Q 002152 365 GLVVCHHTSPR---YIPFPLRYACEFLVQAFSLQLYME 399 (959)
Q Consensus 365 GLi~~hh~~pr---~~~~~~r~~~~~l~~~~s~~l~~~ 399 (959)
|+|.++++.++ .|+.+....++.++.+++..|...
T Consensus 283 GvL~l~~~~~~~~~~ft~~D~~lL~~lA~~~a~AL~na 320 (878)
T 3bjc_A 283 GVAQAINKKSGNGGTFTEKDEKDFAAYLAFCGIVLHNA 320 (878)
T ss_dssp --------------------------------------
T ss_pred EEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998754 899999999999999999988743
No 155
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=97.98 E-value=1.3e-05 Score=85.25 Aligned_cols=74 Identities=26% Similarity=0.286 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhhcc-cCcccccccee
Q 002152 884 LEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLES-SSISENQRQYLETSDACERQIMTIIDG-MDLRCIEEGRC 957 (959)
Q Consensus 884 ~ae~~~~ak~~fLa~iSHElRnPL~~I~g~~~LL~~-~~l~e~~~~~l~~i~~~~~rl~~LI~d-Ld~srIe~G~l 957 (959)
..++..+.+.+|++.++|||||||++|.++++++.. ...+++.+++++.+..+++++..++++ +++++++.+..
T Consensus 32 ~l~~~~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~~~ 107 (268)
T 4ew8_A 32 ALAEAERLKRDFVGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAAVRAAATQLARSIDDVLDMAQIDAGEM 107 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 344455677899999999999999999999999986 346788899999999999999999999 89999888754
No 156
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1
Probab=97.87 E-value=0.00063 Score=68.54 Aligned_cols=142 Identities=13% Similarity=0.131 Sum_probs=103.2
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEeecCCCCeEEEEEecCCCCCCccCCccCCCCchHHHHHH
Q 002152 215 LAVSAISRLQALPGGDIGLLCDTVVEDVQKLT-GYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFL 293 (959)
Q Consensus 215 ~~~~~~~~l~~~~~~~l~~~~~~~v~~vr~~~-g~DRv~iY~F~~d~~G~viaE~~~~~~~s~lg~~~pa~dip~~ar~l 293 (959)
++.++-.-+.. ..|+.+.++.+++.+.+.+ +++++.+|-++++ .-+++... +.. -..+||-.. --+-.-
T Consensus 30 ll~~l~~ll~~--~~dl~~~L~~v~~ll~~~l~~~~~~~iyL~d~~--~L~l~~~~--G~~--~~~~i~~Ge--Gi~G~a 99 (195)
T 1vhm_A 30 LNRDFNALMAG--ETSFLATLANTSALLYERLTDINWAGFYLLEDD--TLVLGPFQ--GKI--ACVRIPVGR--GVCGTA 99 (195)
T ss_dssp HHHHHHHHHTT--CCCHHHHHHHHHHHHHHHSSSCSEEEEEEEETT--EEEEEEEE--ESC--CCSEEETTS--HHHHHH
T ss_pred HHHHHHHHHhc--CCcHHHHHHHHHHHHHHhCCCCCEEEEEEEECC--EEEEEEec--Ccc--cceEecCCC--ChHHHH
Confidence 33444444455 5699999999999999999 9999999999862 33333222 111 134555432 124456
Q ss_pred HHhCCEEEEecCCCCCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEeecCC
Q 002152 294 FKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTS 373 (959)
Q Consensus 294 y~~~~~r~i~d~~~~~~~l~~~~~~~~~ldls~s~lRsvsp~h~~yl~nmgv~asl~v~i~~~~~~~~~LWGLi~~hh~~ 373 (959)
...++.-+|+|+...|--+ +| ..+++|.|+|||+.+| ++.|.|.+....
T Consensus 100 a~tg~~i~V~Dv~~~p~~~---------------------~~------~~~~~S~l~VPI~~~g----~viGVL~i~s~~ 148 (195)
T 1vhm_A 100 VARNQVQRIEDVHVFDGHI---------------------AC------DAASNSEIVLPLVVKN----QIIGVLDIDSTV 148 (195)
T ss_dssp HHHTSCEEESCTTTCTTCC---------------------CS------CCCCSEEEEEEEEETT----EEEEEEEEEESS
T ss_pred HhcCCEEEECCcccCcchh---------------------hc------CCCccEEEEEeEeECC----EEEEEEEecCCC
Confidence 7778889999998754311 00 1257999999999988 999999999988
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHH
Q 002152 374 PRYIPFPLRYACEFLVQAFSLQLY 397 (959)
Q Consensus 374 pr~~~~~~r~~~~~l~~~~s~~l~ 397 (959)
|+.++.+...+++.++.+++..|+
T Consensus 149 ~~~F~e~d~~~L~~lA~~ia~ale 172 (195)
T 1vhm_A 149 FGRFTDEDEQGLRQLVAQLEKVLA 172 (195)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999998888775
No 157
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A*
Probab=97.77 E-value=0.00073 Score=65.57 Aligned_cols=130 Identities=13% Similarity=0.191 Sum_probs=96.5
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCeEEEEeecCCCCeEEEEEecCCCCCCccCCccCCCCchHHHHHHHHhCCEEEEecCC
Q 002152 228 GGDIGLLCDTVVEDVQKLTG-YDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCH 306 (959)
Q Consensus 228 ~~~l~~~~~~~v~~vr~~~g-~DRv~iY~F~~d~~G~viaE~~~~~~~s~lg~~~pa~dip~~ar~ly~~~~~r~i~d~~ 306 (959)
..|+.+.++.++..+++.++ +|++.+|-+++ ++.+..+-.. .+. -.++|-.. --+..-+..++.-+|+|+.
T Consensus 29 ~~dl~~~L~~v~~ll~~~l~~~~~~gfYL~~~---~~L~l~~~~G-~~a--~~ri~~Ge--Gv~G~aa~~~~~i~V~Dv~ 100 (160)
T 3ksh_A 29 EHHMIAILSNMSALLNDNLDQINWVGFYLLEQ---NELILGPFQG-HPA--CVHIPIGK--GVCGTAVSERRTQVVADVH 100 (160)
T ss_dssp CCCHHHHHHHHHHHHHHHCSSCSEEEEEEEET---TEEEEEEEEE-SCC--CSEEETTS--HHHHHHHHHTSCEEESCGG
T ss_pred CCCHHHHHHHHHHHHHHHcccCCEEEEEEEEC---CEEEEEeccC-Ccc--cEEeeCCC--CHHHHHHhhCCEEEECCcc
Confidence 46999999999999999997 99999999975 3444332211 111 23444332 2344557789999999988
Q ss_pred CCCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEeecCCCCCCChhHHHHHH
Q 002152 307 AIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACE 386 (959)
Q Consensus 307 ~~~~~l~~~~~~~~~ldls~s~lRsvsp~h~~yl~nmgv~asl~v~i~~~~~~~~~LWGLi~~hh~~pr~~~~~~r~~~~ 386 (959)
..|--+ .| ..+++|-++|||+.+| +++|.|.+.+..++.++.+...+++
T Consensus 101 ~~p~~i---------------------~~------~~~~~Sei~VPI~~~g----~viGVL~i~s~~~~~F~e~D~~~L~ 149 (160)
T 3ksh_A 101 QFKGHI---------------------AC------DANSKSEIVVPIFKDD----KIIGVLDIDAPITDRFDDNDKEHLE 149 (160)
T ss_dssp GSTTCC---------------------GG------GTTCSEEEEEEEEETT----EEEEEEEEEESSSSCCCHHHHHHHH
T ss_pred cCcccc---------------------cc------CcccCceEEEEEEECC----EEEEEEEEecCCCCCCCHHHHHHHH
Confidence 655311 11 2357899999999998 9999999999889989999999999
Q ss_pred HHHHHHHHHH
Q 002152 387 FLVQAFSLQL 396 (959)
Q Consensus 387 ~l~~~~s~~l 396 (959)
.++.+++..|
T Consensus 150 ~lA~~la~~~ 159 (160)
T 3ksh_A 150 AIVKIIEKQL 159 (160)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9888887654
No 158
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A*
Probab=97.74 E-value=0.00043 Score=68.99 Aligned_cols=132 Identities=7% Similarity=-0.005 Sum_probs=96.9
Q ss_pred CCCHHHHHHHHHHHHHHHh-----CCCeEEEEeecCCCCeEEEEEecCCCCCCccCCccCCCCchHHHHHHHHhCCEEEE
Q 002152 228 GGDIGLLCDTVVEDVQKLT-----GYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMI 302 (959)
Q Consensus 228 ~~~l~~~~~~~v~~vr~~~-----g~DRv~iY~F~~d~~G~viaE~~~~~~~s~lg~~~pa~dip~~ar~ly~~~~~r~i 302 (959)
..++..+++.+++.+.+.+ +++++.+|-++++..++.+.-...... -..+||...= -+-.-...++.-+|
T Consensus 39 ~~dl~~~L~~v~~~l~~~l~~~~~~~~~~~~yl~d~~~~~~L~l~~~~g~~---~~~~i~~g~G--i~G~aa~~g~~v~v 113 (180)
T 1f5m_A 39 QVNWVCNLSNASSLIWHAYKSLAVDINWAGFYVTQASEENTLILGPFQGKV---ACQMIQFGKG--VCGTAASTKETQIV 113 (180)
T ss_dssp CCBHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECSSSSCEEEEEEEEESC---CCSEEETTSH--HHHHHHHHTSCEEE
T ss_pred CccHHHHHHHHHHHHHHHHhhccCCccEEEEEEEecCCCCeEEEeecCCCc---cceeecCCCc--chhhhhhcCCEEEe
Confidence 4689999999999999998 999999999998764455432211111 1345554321 23445667788889
Q ss_pred ecCCCCCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEE-cCCCCCceeEEEEeecCCCCCCChhH
Q 002152 303 CDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVII-NSKDSMKLWGLVVCHHTSPRYIPFPL 381 (959)
Q Consensus 303 ~d~~~~~~~l~~~~~~~~~ldls~s~lRsvsp~h~~yl~nmgv~asl~v~i~~-~~~~~~~LWGLi~~hh~~pr~~~~~~ 381 (959)
+|+...|--+ + ...+++|.|++||+. +| ++.|.|.+++..|+.+..+.
T Consensus 114 ~Dv~~dp~~~---------------------~------~~~~~~S~l~vPi~~~~g----~viGVL~l~s~~~~~F~~~d 162 (180)
T 1f5m_A 114 PDVNKYPGHI---------------------A------CDGETKSEIVVPIISNDG----KTLGVIDIDCLDYEGFDHVD 162 (180)
T ss_dssp SCGGGSTTCC---------------------C------SSTTCCEEEEEEEECTTS----CEEEEEEEEESSTTCCCHHH
T ss_pred CCcccCcccc---------------------c------cCcccceEEEEEEEcCCC----eEEEEEEeccCCCCCcCHHH
Confidence 9987654311 1 124789999999998 77 99999999998898899999
Q ss_pred HHHHHHHHHHHHHH
Q 002152 382 RYACEFLVQAFSLQ 395 (959)
Q Consensus 382 r~~~~~l~~~~s~~ 395 (959)
..+++.++.+++..
T Consensus 163 ~~~L~~la~~~a~~ 176 (180)
T 1f5m_A 163 KEFLEKLAKLINKS 176 (180)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999888887764
No 159
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae}
Probab=97.56 E-value=0.0024 Score=62.58 Aligned_cols=143 Identities=11% Similarity=0.016 Sum_probs=100.8
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEeecCCCCeEEEEEecCCCCCCccCCccCCCCchHHHH
Q 002152 213 QKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTG-YDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAAR 291 (959)
Q Consensus 213 ~~~~~~~~~~l~~~~~~~l~~~~~~~v~~vr~~~g-~DRv~iY~F~~d~~G~viaE~~~~~~~s~lg~~~pa~dip~~ar 291 (959)
|..+..-+++|-+- ..|+.+.++.++..+.+.++ +|++.+|-+++ ++.+..+-. +.+. ..+||-.. --+.
T Consensus 16 ~~~ll~~l~~ll~~-~~dl~~~L~nv~~lL~~~l~~~~~~gfYL~~~---~~L~l~a~~-G~~a--~~ri~~Ge--Gv~G 86 (171)
T 3rfb_A 16 YQMLNEELSFLLEG-ETNVLANLSNASALIKSRFPNTVFAGFYLFDG---KELVLGPFQ-GGVS--CIRIALGK--GVCG 86 (171)
T ss_dssp HHHHHHHHHHHHTT-CCBHHHHHHHHHHHHHHHCTTEEEEEEEEECS---SEEEEEEEE-SSSC--CCEEETTS--HHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHccCCCEEEEEEEEC---CEEEEEecc-CCcc--ceEeeCCc--CHHH
Confidence 44333334444321 56999999999999999997 99999999875 354433311 1111 23444322 2345
Q ss_pred HHHHhCCEEEEecCCCCCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEeec
Q 002152 292 FLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHH 371 (959)
Q Consensus 292 ~ly~~~~~r~i~d~~~~~~~l~~~~~~~~~ldls~s~lRsvsp~h~~yl~nmgv~asl~v~i~~~~~~~~~LWGLi~~hh 371 (959)
.-+..++.-+|+|+...|--+ .| ..+++|-++|||+.+| +++|.|...+
T Consensus 87 ~va~tg~~i~V~Dv~~~p~~i---------------------~~------~~~~~Sei~VPI~~~g----~viGVL~i~s 135 (171)
T 3rfb_A 87 EAAHFQETVIVGDVTTYLNYI---------------------SC------DSLAKSEIVVPMMKNG----QLLGVLDLDS 135 (171)
T ss_dssp HHHHTTSCEEESCTTSCSSCC---------------------CS------CTTCCEEEEEEEEETT----EEEEEEEEEE
T ss_pred HHHhhCCEEEECCcccCcccc---------------------cc------CcccCceEEEEEEECC----EEEEEEEEec
Confidence 567889999999998766421 01 1247899999999998 9999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHH
Q 002152 372 TSPRYIPFPLRYACEFLVQAFSLQ 395 (959)
Q Consensus 372 ~~pr~~~~~~r~~~~~l~~~~s~~ 395 (959)
..++.++.+....++.++.+++..
T Consensus 136 ~~~~~F~e~D~~~L~~lA~~la~~ 159 (171)
T 3rfb_A 136 SEIEDYDAMDRDYLEQFVAILLEK 159 (171)
T ss_dssp SSTTCCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHH
Confidence 889889999999988888877654
No 160
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=97.53 E-value=5.4e-05 Score=79.02 Aligned_cols=67 Identities=22% Similarity=0.266 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHhHhhhhHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHHHhhcc-cCccccccce
Q 002152 890 YAKIKELAYIRQEVKNPLNGIRFVHKLLESSSIS-ENQRQYLETSDACERQIMTIIDG-MDLRCIEEGR 956 (959)
Q Consensus 890 ~ak~~fLa~iSHElRnPL~~I~g~~~LL~~~~l~-e~~~~~l~~i~~~~~rl~~LI~d-Ld~srIe~G~ 956 (959)
+.+.+|++.++|||||||++|.++++++.....+ ++.+++++.+...+++|..++++ +++++.+.+.
T Consensus 12 ~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~~ 80 (244)
T 3d36_A 12 EAVTHLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELDRAEAIITDYLTFAKPAPET 80 (244)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCC
T ss_pred HHHHHHHHHhhHHhccHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 3566889999999999999999999999875554 45789999999999999999999 8999987654
No 161
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=97.48 E-value=0.00011 Score=82.86 Aligned_cols=68 Identities=7% Similarity=-0.019 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHhHhhhhHHH-HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcc-cCcccccccee
Q 002152 890 YAKIKELAYIRQEVKNPLNGIR-FVHKLLESSSISENQRQYLETSDACERQIMTIIDG-MDLRCIEEGRC 957 (959)
Q Consensus 890 ~ak~~fLa~iSHElRnPL~~I~-g~~~LL~~~~l~e~~~~~l~~i~~~~~rl~~LI~d-Ld~srIe~G~l 957 (959)
+.+.++++.++||+||||+.|. |+.++++....+++.+++++.+..+..+|..||++ |++++++.|++
T Consensus 119 ~~~~~~l~~i~helrtpL~~i~~g~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~l~~~~~~~~ 188 (388)
T 1gkz_A 119 AQYCQLVRQLLDDHKDVVTLLAEGLRESRKHIEDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPDFV 188 (388)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHSSSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTTEE
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcc
Confidence 3577899999999999999999 88887776555778899999999999999999999 99999999876
No 162
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=97.35 E-value=0.00029 Score=63.72 Aligned_cols=59 Identities=15% Similarity=0.228 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcc-cCc
Q 002152 886 DMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDG-MDL 949 (959)
Q Consensus 886 e~~~~ak~~fLa~iSHElRnPL~~I~g~~~LL~~~~l~e~~~~~l~~i~~~~~rl~~LI~d-Ld~ 949 (959)
++....+.+|++.++||+||||+.|.++.+++.. +..++++.+..++.+|..++++ |+|
T Consensus 54 ~~~~~~~~~~~~~~shel~tpl~~i~~~~e~l~~-----~~~~~~~~i~~~~~~l~~~i~~ll~~ 113 (114)
T 3zcc_A 54 KQLADDGTLLMAGVSHDLRTPLTRIRLATEMMSE-----QDGYLAESINKDIEECNAIIEQFIDY 113 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCG-----GGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHcChHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444567789999999999999999999998854 3445569999999999999999 776
No 163
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=97.20 E-value=1.4e-05 Score=82.20 Aligned_cols=65 Identities=11% Similarity=0.187 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhHhhhhHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHHHhhcc-cCccccccce
Q 002152 892 KIKELAYIRQEVKNPLNGIRFVHKLLESSSIS-ENQRQYLETSDACERQIMTIIDG-MDLRCIEEGR 956 (959)
Q Consensus 892 k~~fLa~iSHElRnPL~~I~g~~~LL~~~~l~-e~~~~~l~~i~~~~~rl~~LI~d-Ld~srIe~G~ 956 (959)
+.+|++.++|||||||++|.++.+++.....+ +..+++++.+..+++++..++++ +++++++.+.
T Consensus 2 ~~~~~~~~~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~~ 68 (222)
T 3jz3_A 2 ERRFTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKALLQLHSGIDRATRLVDQLLTLSRLDSLD 68 (222)
T ss_dssp --------------------------------------CEECCC-CHHHHHHHHHHHHHHHTCCCST
T ss_pred HHHHHHHHhHHhcCcHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 34789999999999999999999998764433 44578888899999999999999 8999988765
No 164
>3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV}
Probab=97.04 E-value=0.0071 Score=57.94 Aligned_cols=134 Identities=15% Similarity=0.095 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCCccCCccCCCCchHHHH
Q 002152 212 SQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAAR 291 (959)
Q Consensus 212 ~~~~~~~~~~~l~~~~~~~l~~~~~~~v~~vr~~~g~DRv~iY~F~~d~~G~viaE~~~~~~~s~lg~~~pa~dip~~ar 291 (959)
.++++..+-..|. +.+.+++++.+++..++++|+||..+|-+|+| |+....+.. | | ..|
T Consensus 13 rLrlL~e~~~~L~---~l~~~~~l~~il~~a~~~~~~d~gsL~l~d~~--~~l~~~aa~-------G---~------~~~ 71 (160)
T 3cit_A 13 RLRLLVDTGQELI---QLPPEAMRKCVLQRACAFVAMDHGLLLEWGAD--NGVQTTARH-------G---S------KER 71 (160)
T ss_dssp HHHHHHHHHHHHH---HSCHHHHHHHHHHHHHHHTTCSEEEEEECC----CCCEEEEEE-------S---C------HHH
T ss_pred HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHhccCeeEEEEEcCC--Cceeeeecc-------C---c------hhh
Confidence 4556666666664 34679999999999999999999999999996 544333221 2 0 111
Q ss_pred HHHHhCCEEEEecCCCCCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEE-EcCCCCCceeEEEEee
Q 002152 292 FLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVI-INSKDSMKLWGLVVCH 370 (959)
Q Consensus 292 ~ly~~~~~r~i~d~~~~~~~l~~~~~~~~~ldls~s~lRsvsp~h~~yl~nmgv~asl~v~i~-~~~~~~~~LWGLi~~h 370 (959)
...+|+++|.+... | + .+ +..-+..++-|+||+. .+| +.+|.+.+=
T Consensus 72 ----l~~lr~~~~~~~~g----p-----r--------------~~--~~tg~~t~svl~vPL~~~~g----~~~Gvlql~ 118 (160)
T 3cit_A 72 ----LSTLETTADPLAIG----P-----Q--------------WL--ERPGTHLPCVLLLPLRGADE----GSFGTLVLA 118 (160)
T ss_dssp ----HTTSCCCCCTTCCS----C-----E--------------EE--ECTTSSSCEEEEEEEECSSS----SEEEEEEEE
T ss_pred ----hhhhhccccccccc----c-----c--------------cc--cccCcccceeEEEeeecCCC----cEEEEEEEe
Confidence 34555566655332 0 0 00 1333456788999995 555 999999997
Q ss_pred cCC-CCCCChhHHHHHHHHHHHHHHHHHHH
Q 002152 371 HTS-PRYIPFPLRYACEFLVQAFSLQLYME 399 (959)
Q Consensus 371 h~~-pr~~~~~~r~~~~~l~~~~s~~l~~~ 399 (959)
+.. ...+..+....++.|+.+++.+|+..
T Consensus 119 N~~~~~~f~~eD~e~l~lLA~~~a~aien~ 148 (160)
T 3cit_A 119 NSVAISAPDGEDIESLQLLATLLAAHLENN 148 (160)
T ss_dssp ESSCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 775 55789999999999999999988654
No 165
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=97.04 E-value=9.4e-05 Score=92.53 Aligned_cols=142 Identities=9% Similarity=-0.007 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCC---C------CCCccCCccCCCCchHHHHHHHHhCCE
Q 002152 229 GDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRS---D------LEPYLGIHFPANDIPQAARFLFKQNRV 299 (959)
Q Consensus 229 ~~l~~~~~~~v~~vr~~~g~DRv~iY~F~~d~~G~viaE~~~~---~------~~s~lg~~~pa~dip~~ar~ly~~~~~ 299 (959)
.+++++++.+++.+++++|+||+.||-+++++. +.++.+... . ..+.-+.++|... .-+...+..+.+
T Consensus 348 ~dl~~ll~~I~~~a~~ll~a~~~~V~L~d~~~~-~l~a~a~~~~s~~~~~~~~~~~~~~~~~p~~~--gi~g~v~~~g~~ 424 (878)
T 3bjc_A 348 QSLEVILKKIAATIISFMQVQKCTIFIVDEDCS-DSFSSVFHMECEELEKSSDTLTREHDANKINY--MYAQYVKNTMEP 424 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccHHHHHHHHHHHHHHHhCcceeEEEEEcCccc-chhHHHhhccccccccccccccccccccchhh--hHHHHHhhcCCe
Confidence 489999999999999999999999999998653 344433221 1 1111133444321 113334556666
Q ss_pred EEEecCCCCCcccccccccCCccccccccccCCChhhHHHHhh---cCceeEEEEEEEEc--CCCCCceeEEEEeecCCC
Q 002152 300 RMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTN---MGSIASLVMAVIIN--SKDSMKLWGLVVCHHTSP 374 (959)
Q Consensus 300 r~i~d~~~~~~~l~~~~~~~~~ldls~s~lRsvsp~h~~yl~n---mgv~asl~v~i~~~--~~~~~~LWGLi~~hh~~p 374 (959)
..|+|+...|- . +.+...... .++++.|++||+.+ | +++|.|..+++.+
T Consensus 425 v~i~D~~~d~r--~--------------------~~~~~~~~g~~~~~~rS~L~vPL~~~~~g----~viGVL~l~~~~~ 478 (878)
T 3bjc_A 425 LNIPDVSKDKR--F--------------------PWTTENTGNVNQQCIRSLLCTPIKNGKKN----KVIGVCQLVNKME 478 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeecCcccccc--c--------------------ccccccccCccccccceEEEEEEecCCCC----cEEEEEEEEEcCC
Confidence 67777654432 0 111111222 67899999999986 7 9999999998875
Q ss_pred ------CCCChhHHHHHHHHHHHHHHHHHHH
Q 002152 375 ------RYIPFPLRYACEFLVQAFSLQLYME 399 (959)
Q Consensus 375 ------r~~~~~~r~~~~~l~~~~s~~l~~~ 399 (959)
+.|+.....+++.++.++++.|+.+
T Consensus 479 ~~~G~~~~Ft~~d~~lL~~lA~~aaiAIena 509 (878)
T 3bjc_A 479 ENTGKVKPFNRNDEQFLEAFVIFCGLGIQNT 509 (878)
T ss_dssp -------------------------------
T ss_pred CcccCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999998888643
No 166
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=96.54 E-value=0.0016 Score=73.45 Aligned_cols=59 Identities=7% Similarity=-0.031 Sum_probs=46.1
Q ss_pred HHHHHHHHHhHh-----hhhHHHHHHHHHhcCCCCHH----HHHHHH--HHHHHHHHHHHhhcc-cCcccccc
Q 002152 894 KELAYIRQEVKN-----PLNGIRFVHKLLESSSISEN----QRQYLE--TSDACERQIMTIIDG-MDLRCIEE 954 (959)
Q Consensus 894 ~fLa~iSHElRn-----PL~~I~g~~~LL~~~~l~e~----~~~~l~--~i~~~~~rl~~LI~d-Ld~srIe~ 954 (959)
++++.++||||| ||+.|.|+++++.....++. ..+|++ .+.+.+.+| +|++ |+++++++
T Consensus 97 ~~~~~~~HeLrtpl~~vPlt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~ll~l~~~~~ 167 (394)
T 2btz_A 97 SQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRM--LINQHTLIFDGST 167 (394)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCC---
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHhhhHHHH--HHHHHHHHhcccc
Confidence 578899999999 88888999999986555533 445888 488888899 9999 99999987
No 167
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=96.50 E-value=0.003 Score=58.11 Aligned_cols=100 Identities=7% Similarity=-0.058 Sum_probs=74.0
Q ss_pred eeeeCCCCcEEeecHHHHHHhCCCc--hhhcCCCcccccccccccccChhhHH--HHHHHHHhhhcCCCcceeeEEEEcc
Q 002152 765 IFASDENACCSEWNAAMEKVTGWMR--HEVIGKMLPREIFGNFCRMKGQDMLT--KFMILLYQGITGQGTENFPFGFFNR 840 (959)
Q Consensus 765 I~~~D~~g~i~~~N~a~~~l~G~~~--eeviGk~~~~~i~~~~~~l~~~e~~~--~~~~~l~~~~~~~~~~~~e~~~~~~ 840 (959)
+.-.|.+|+++++..... ..++.. +|++|+.+.+ +.|++|.. .+....++++..+....-.||++.+
T Consensus 10 ~sRh~~dGKf~~vDq~~~-r~~~~~g~qdLlGrsiy~--------f~H~~D~~~s~l~~h~~~vl~~Gq~~S~~YRfr~k 80 (132)
T 1oj5_A 10 MTKQDTTGKIISIDTSSL-RAAGRTGWEDLVRKCIYA--------FFQPQGREPSYARQLFQEVMTRGTASSPSYRFILN 80 (132)
T ss_dssp EEEECTTCCEEEEECHHH-HTTCCSCHHHHHHHHHHH--------HTSCBTTBCCHHHHHHHHHHHHSEEECCCEEEECT
T ss_pred EEeecCCCcEEEEecccc-cccccccHHHHHHHHHHH--------HhCcccchHHHHHHHHHHHHHcCCccccceEEEec
Confidence 455799999999999887 467777 8999997553 66677754 6777777777766678888999999
Q ss_pred CCcEEEEEEEEeeeeCCC-CCEEEEEEEEeeccc
Q 002152 841 QGQFVEVALTASRRTDAE-GKVIGCFCFMQILVP 873 (959)
Q Consensus 841 dG~~~~v~~~~~pi~d~~-G~i~g~v~i~~DITe 873 (959)
+|.++|+......+++.. .++-.++++-.-+.+
T Consensus 81 ~g~~V~~qT~sk~f~np~t~e~e~Ivs~n~v~r~ 114 (132)
T 1oj5_A 81 DGTMLSAHTRCKLCYPQSPDMQPFIMGIHIIDRE 114 (132)
T ss_dssp TSCEEEEEEEEEEECC----CCCEEEEEEEEECC
T ss_pred CCcEEEEEEEEEEecCCCCCCCCEEEEEEEEEcC
Confidence 999999999998887743 333445555444443
No 168
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=96.33 E-value=0.008 Score=53.83 Aligned_cols=58 Identities=16% Similarity=0.251 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcc-cCccc
Q 002152 889 IYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDG-MDLRC 951 (959)
Q Consensus 889 ~~ak~~fLa~iSHElRnPL~~I~g~~~LL~~~~l~e~~~~~l~~i~~~~~rl~~LI~d-Ld~sr 951 (959)
...+.++++.++||+++|++.|.+..+.+... ..++.+.+...+.+|..++++ +++++
T Consensus 57 ~~~~~~~~~~~shel~~~l~~i~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~ 115 (115)
T 3zrx_A 57 ADDRTLLMAGVSHDLRTPLTRIRLATEMMSEQ-----DGYLAESINKDIEECNAIIEQFIDYLR 115 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGG-----GHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34567889999999999999999999877542 356788899999999999999 88875
No 169
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=96.25 E-value=0.003 Score=58.15 Aligned_cols=97 Identities=5% Similarity=0.026 Sum_probs=73.1
Q ss_pred ccEEEEcCCCceehhcHHHHHHhCCCc--ccccCCCccccccCCCchH--HHHHHHHHHHcCCCcceEEEEEEeeeeccC
Q 002152 629 APIFGVDSSGTINGWNAKVAELTGLPA--SEAMGKSLIDEVVHEESQG--AVENLICRALLGEEDKNVELKLRKFELQKQ 704 (959)
Q Consensus 629 ~~I~~~D~dg~iv~~N~~~~~l~G~~~--eeliGk~~~~~l~~~~~~~--~~~~~l~~~l~~~~~~~~e~~~~~~~~~~d 704 (959)
..+.-.|.+|+|+++..+.. ..++.+ +|++|+.+. +++|+++.. .+.+..+.++..+.....-+++ +.++
T Consensus 8 ~F~sRh~~dGKf~~vDq~~~-r~~~~~g~qdLlGrsiy-~f~H~~D~~~s~l~~h~~~vl~~Gq~~S~~YRf----r~k~ 81 (132)
T 1oj5_A 8 SFMTKQDTTGKIISIDTSSL-RAAGRTGWEDLVRKCIY-AFFQPQGREPSYARQLFQEVMTRGTASSPSYRF----ILND 81 (132)
T ss_dssp EEEEEECTTCCEEEEECHHH-HTTCCSCHHHHHHHHHH-HHTSCBTTBCCHHHHHHHHHHHHSEEECCCEEE----ECTT
T ss_pred eeEEeecCCCcEEEEecccc-cccccccHHHHHHHHHH-HHhCcccchHHHHHHHHHHHHHcCCccccceEE----EecC
Confidence 44566799999999999887 477777 899999999 999999966 7888888888655555555666 5689
Q ss_pred CcEEEEEEEEEEeecCC-CCEEEEEEEe
Q 002152 705 HSVVYILVNACTSRDYK-NNVKGVCFVG 731 (959)
Q Consensus 705 G~~~~v~v~~~pi~d~~-g~~~gvv~v~ 731 (959)
|..+|+......+++.. +++..++++-
T Consensus 82 g~~V~~qT~sk~f~np~t~e~e~Ivs~n 109 (132)
T 1oj5_A 82 GTMLSAHTRCKLCYPQSPDMQPFIMGIH 109 (132)
T ss_dssp SCEEEEEEEEEEECC----CCCEEEEEE
T ss_pred CcEEEEEEEEEEecCCCCCCCCEEEEEE
Confidence 99999999998888752 3333444443
No 170
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=96.21 E-value=0.0063 Score=68.56 Aligned_cols=61 Identities=7% Similarity=0.131 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhHh-----hhhHHHHHHHHHhcCC----CCHHHHHHHH--HHHHHHHHHHHhhcc-cC-ccccccce
Q 002152 893 IKELAYIRQEVKN-----PLNGIRFVHKLLESSS----ISENQRQYLE--TSDACERQIMTIIDG-MD-LRCIEEGR 956 (959)
Q Consensus 893 ~~fLa~iSHElRn-----PL~~I~g~~~LL~~~~----l~e~~~~~l~--~i~~~~~rl~~LI~d-Ld-~srIe~G~ 956 (959)
.++++.++||||| ||+.|.|++++++... ..++.+++++ .+.+.+.+| +|++ |+ ++++ +|.
T Consensus 96 ~~~~~~~~HeLrtpl~~vPlt~i~g~~el~~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~lL~l~~~~-~~~ 169 (394)
T 2e0a_A 96 LSDFVDTLIKVRNRHHNVVPTMAQGIIEYKDACTVDPVTNQNLQYFLDRFYMNRISTRM--LMNQHILIFSDS-QTG 169 (394)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCSS-CCC
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhcc-cCC
Confidence 3567889999999 8888899999887533 3455688999 688999999 9999 87 7776 443
No 171
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=95.76 E-value=0.01 Score=67.13 Aligned_cols=59 Identities=12% Similarity=0.067 Sum_probs=43.8
Q ss_pred HHHHHHHHHhHh-----hhhHHHHHHHHHhcCCCC----HHHHHHHHH--HHHHHHHHHHhhcc-cCcccccc
Q 002152 894 KELAYIRQEVKN-----PLNGIRFVHKLLESSSIS----ENQRQYLET--SDACERQIMTIIDG-MDLRCIEE 954 (959)
Q Consensus 894 ~fLa~iSHElRn-----PL~~I~g~~~LL~~~~l~----e~~~~~l~~--i~~~~~rl~~LI~d-Ld~srIe~ 954 (959)
+++..++||||| ||+.|.|++++++....+ ++.+++++. +.+.+.+| ||++ |+++++|+
T Consensus 107 ~~f~~~~HeLrt~~~~vPLt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~~~~~~~rl--li~~ll~l~~~e~ 177 (407)
T 2q8g_A 107 YDFTDTVIRIRNRHNDVIPTMAQGVIEYKESFGVDPVTSQNVQYFLDRFYMSRISIRM--LLNQHSLLFGGKG 177 (407)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHC---
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHHHHHHhhccCccCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcccc
Confidence 344555599999 999999999988864433 345788887 77778888 9999 99999976
No 172
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=93.80 E-value=0.066 Score=60.69 Aligned_cols=55 Identities=16% Similarity=0.065 Sum_probs=39.9
Q ss_pred HHHHHHHhHhhhh-----HHHHHHHHHhcCCCC----HHHHHHHHHHHHH--HHHHHHhhcc-cCcccc
Q 002152 896 LAYIRQEVKNPLN-----GIRFVHKLLESSSIS----ENQRQYLETSDAC--ERQIMTIIDG-MDLRCI 952 (959)
Q Consensus 896 La~iSHElRnPL~-----~I~g~~~LL~~~~l~----e~~~~~l~~i~~~--~~rl~~LI~d-Ld~srI 952 (959)
++.++|||||||+ .|.|++++++....+ ++..++++.+..+ +.+| +|++ |.+.+.
T Consensus 121 f~~~~HeLrtPL~~vi~~~i~g~~ell~~~~~~~~~~~~~~~~l~~i~~~~~~~rl--li~~lL~l~~~ 187 (419)
T 1y8o_A 121 FLQVLIKVRNRHNDVVPTMAQGVIEYKEKFGFDPFISTNIQYFLDRFYTNRISFRM--LINQHTLLFGG 187 (419)
T ss_dssp HHHHHHHHHHHGGGHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHSC
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcc
Confidence 4566799999999 778999988753233 4467788886655 7777 8998 644433
No 173
>3eea_A GAF domain/HD domain protein; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; HET: PG6; 1.80A {Geobacter sulfurreducens}
Probab=93.00 E-value=4 Score=37.32 Aligned_cols=139 Identities=16% Similarity=0.189 Sum_probs=94.1
Q ss_pred CHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCC-ccCC----ccCCCCchHHHHHHHHhCCEEEEec
Q 002152 230 DIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEP-YLGI----HFPANDIPQAARFLFKQNRVRMICD 304 (959)
Q Consensus 230 ~l~~~~~~~v~~vr~~~g~DRv~iY~F~~d~~G~viaE~~~~~~~s-~lg~----~~pa~dip~~ar~ly~~~~~r~i~d 304 (959)
+.++..+...+-++++.|+-=..||-||....---=|-| -|+++ |+-+ ..-...||---.-|-.++.. +..
T Consensus 13 ~vd~~~~~l~rll~k~~~~~w~~vy~~drerrdf~~~rs--~~~pa~~l~~~r~mpl~p~k~pllk~~lr~~~hl-l~~- 88 (162)
T 3eea_A 13 DVDEVIKDLSRLLRKLVKTRWIAVYFFDRERRDFAPARS--TGLPASFLPVFREMPLAPDKIPLLKSMLRKRQHL-MLT- 88 (162)
T ss_dssp CHHHHHHHHHHHHHHHSCCSEEEEEEECC--CSEEEEEE--ESCCGGGHHHHHHCCBCTTTCHHHHHHHHHTCCE-EES-
T ss_pred cHHHHHHHHHHHHHHHhCCceEEEEEeehhhhccccccc--cCCchhhhHHHhhCCCCCCccHHHHHHHHhcCcc-ccC-
Confidence 888888888899999999999999999987655444443 33332 2211 11111233222222111111 111
Q ss_pred CCCCCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEeecCCCC-CCChhHHH
Q 002152 305 CHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPR-YIPFPLRY 383 (959)
Q Consensus 305 ~~~~~~~l~~~~~~~~~ldls~s~lRsvsp~h~~yl~nmgv~asl~v~i~~~~~~~~~LWGLi~~hh~~pr-~~~~~~r~ 383 (959)
|-+.|.| ..|--..+++|+.+-| +|+++++ +-=|.+.+-..+.| .++++++.
T Consensus 89 ------------------dp~~s~l--~tp~l~k~~~~~~ILg---VPL~~g~----qVIGVLFaArR~~R~~Fs~dEiA 141 (162)
T 3eea_A 89 ------------------DPGSSDL--LTPKLRKLLRNLCVLA---VPMVVRT----QVIGAVFMARTRDNPPFSDAETA 141 (162)
T ss_dssp ------------------CGGGCTT--SCHHHHHHTTTEEEEE---EEEEETT----EEEEEEEEEEETTSCCCCHHHHH
T ss_pred ------------------CCCcchh--ccHHHHHHHhhCeEEE---ecceeCC----EEEEEEEEecccccCCCCHHHHH
Confidence 1222333 2688899999997765 9999999 99999999999999 89999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 002152 384 ACEFLVQAFSLQLYME 399 (959)
Q Consensus 384 ~~~~l~~~~s~~l~~~ 399 (959)
....|+.+.++.++.+
T Consensus 142 LL~SLAahAAIAIdnA 157 (162)
T 3eea_A 142 IIRDLVSHAALVVSHM 157 (162)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999998888643
No 174
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=91.60 E-value=0.25 Score=49.88 Aligned_cols=57 Identities=9% Similarity=0.065 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHhHhhhhHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhhcc
Q 002152 890 YAKIKELAYIRQEVKNPLNGIRFVHKLLES--SSISENQRQYLETSDACERQIMTIIDG 946 (959)
Q Consensus 890 ~ak~~fLa~iSHElRnPL~~I~g~~~LL~~--~~l~e~~~~~l~~i~~~~~rl~~LI~d 946 (959)
+.+.++...++|++++||++|....+++.. ....++.++.+..+...++++...+.+
T Consensus 26 ~er~~la~~l~~~l~~~L~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~r~ 84 (218)
T 3ehh_A 26 EERQRMARDLVDTLGQKLSLMGLKSDLARKLIYKDPEQAARELKSVQQTARTSLNEVRK 84 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678889999999999999999988875 233344677788877777777776666
No 175
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=87.32 E-value=12 Score=38.14 Aligned_cols=145 Identities=9% Similarity=-0.040 Sum_probs=87.2
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCCccCCccCCCCchHHHHHHHHhCC
Q 002152 219 AISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNR 298 (959)
Q Consensus 219 ~~~~l~~~~~~~l~~~~~~~v~~vr~~~g~DRv~iY~F~~d~~G~viaE~~~~~~~s~lg~~~pa~dip~~ar~ly~~~~ 298 (959)
.+.++.. +.+.+++.+.+ ..+.+.+|||++.++-+.+...+ .+ ..+ -.+..|+...+.|..+.
T Consensus 8 ~~~~l~~--a~~~~~l~~~l-~~~~~~lGf~~~~y~~~~~~~~~-------~~--~~~-----i~~~~p~~w~~~Y~~~~ 70 (237)
T 3szt_A 8 YLEILSR--ITTEEEFFSLV-LEICGNYGFEFFSFGARAPFPLT-------AP--KYH-----FLSNYPGEWKSRYISED 70 (237)
T ss_dssp HHHHHHH--CCSHHHHHHHH-HHHHHHTTCSEEEEEEECCCSTT-------SC--CEE-----EEECCCHHHHHHHHHTT
T ss_pred HHHHHHc--CCCHHHHHHHH-HHHHHHcCCCeEEEEeecCCCCC-------CC--CeE-----eeCCCCHHHHHHHHHCC
Confidence 4566776 55888888887 78888999999999877653211 00 001 12345778888888776
Q ss_pred EEEEecCCCCCccccc-ccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEeecCCCCCC
Q 002152 299 VRMICDCHAIPVMVIQ-SKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYI 377 (959)
Q Consensus 299 ~r~i~d~~~~~~~l~~-~~~~~~~ldls~s~lRsvsp~h~~yl~nmgv~asl~v~i~~~~~~~~~LWGLi~~hh~~pr~~ 377 (959)
...+ . |++. .-....|+.-+....+. .+--.++.+.+|++.-+++|+.-.+ ..+|++++....+. .
T Consensus 71 y~~~-----D--Pv~~~~~~~~~p~~W~~~~~~~-~~~~~~~a~~~gl~~G~~~p~~~~~----g~~g~ls~~~~~~~-~ 137 (237)
T 3szt_A 71 YTSI-----D--PIVRHGLLEYTPLIWNGEDFQE-NRFFWEEALHHGIRHGWSIPVRGKY----GLISMLSLVRSSES-I 137 (237)
T ss_dssp GGGT-----C--HHHHHHHHSCSCEEEETTTCSS-CHHHHHHHHHTTCCEEEEEEEECGG----GCEEEEEEEESSSC-C
T ss_pred Cccc-----C--hHhhhhcCCCCCEEeCCCCccc-HHHHHHHHHHcCCCCEEEEEeeCCC----CCeEEEEEecCCCc-C
Confidence 5221 1 2221 11122333333222222 2455677889999999999998665 88999998866543 3
Q ss_pred ChhHHHHHHHHHHHHH
Q 002152 378 PFPLRYACEFLVQAFS 393 (959)
Q Consensus 378 ~~~~r~~~~~l~~~~s 393 (959)
...+........+.++
T Consensus 138 ~~~~~~~~~~~~~~l~ 153 (237)
T 3szt_A 138 AATEILEKESFLLWIT 153 (237)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4444443333333333
No 176
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=86.89 E-value=5.5 Score=43.09 Aligned_cols=78 Identities=9% Similarity=0.052 Sum_probs=46.4
Q ss_pred eeeeCC-CCcEEeecHHHHHHhCCCchhhcCCCcccccccccccccChhhHHHHHHHHHhhhcCCCcceeeEEEEcc-CC
Q 002152 765 IFASDE-NACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNR-QG 842 (959)
Q Consensus 765 I~~~D~-~g~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l~~~~~~~~~~~~e~~~~~~-dG 842 (959)
++++|. +++|+.+|..+.+++|+++++++|+++.+ +.+++....+...+.... ......+++++... +|
T Consensus 45 Ll~~~~~~~~i~~~S~N~~~~lg~~~~~llG~~l~~--------ll~~~~~~~l~~~l~~~~-~~~~~p~~~~~~~~~~~ 115 (337)
T 2ool_A 45 LFVVSETDLRIASVSANVEDLLRQPPASLLNVPIAH--------YLTAASAARLTHALHGGD-PAAINPIRLDVVTPDGE 115 (337)
T ss_dssp EEEECTTTCBEEEEETTHHHHHSSCGGGGTTCBGGG--------GBCHHHHHHHHHHHCC-----CCCSEEEEEEETTEE
T ss_pred EEEEECCCCEEEEEehhHHHHHCcCHHHHcCCCHHH--------HcCHHHHHHHHHHHhcCC-ccccCcEEEEEeccCCC
Confidence 345565 58999999999999999999999998653 334666555444332110 11122334444433 35
Q ss_pred cEEEEEEEE
Q 002152 843 QFVEVALTA 851 (959)
Q Consensus 843 ~~~~v~~~~ 851 (959)
+.+|+.+..
T Consensus 116 ~~f~~~~Hr 124 (337)
T 2ool_A 116 RAFNGILHR 124 (337)
T ss_dssp EEEEEEEEE
T ss_pred eEEEEEEEE
Confidence 556655443
No 177
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=85.45 E-value=8.1 Score=38.40 Aligned_cols=125 Identities=10% Similarity=0.010 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHhcCc--cEEEEcCCCceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHHHHcCCCcce
Q 002152 614 SSVACEMVRLIETATA--PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKN 691 (959)
Q Consensus 614 ~~~~~~l~~lie~~~~--~I~~~D~dg~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~ 691 (959)
......+..+.+..+. .++++|.+|+++..+. ....+. ...+++.+.. ++..+...-
T Consensus 54 ~~~~~~L~~~~~~~~~~~~i~i~d~~G~~~~~~~----------~~~~~~-------~~~~r~~f~~----a~~~~~~~i 112 (217)
T 4dah_A 54 KKMQSILEKTFDSEPRFSGLYFLNAKGDVTASTT----------ELKTKV-------NLADRSFFIK----AKETKKTVI 112 (217)
T ss_dssp HHHHHHHHHHHTTCTTEEEEEEEETTCBEEEESS----------CCSSCC-------BCTTSHHHHH----HHHHCSCEE
T ss_pred HHHHHHHHHHHhcCCcccEEEEECCCCcEEEecC----------CCCCCC-------CcchhHHHHH----HHhcCCcEE
Confidence 4445556777776654 6888999999887642 001111 1223343333 333222211
Q ss_pred EEEEEEeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEeecchhhHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeeCCC
Q 002152 692 VELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDEN 771 (959)
Q Consensus 692 ~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~~~gvv~v~~DITerk~~E~~L~~se~~l~~i~e~~~~~i~~I~~~D~~ 771 (959)
.+... -...|. ++..-+.|+++.+|+++|++++..++...... +..+ .... -++++|.+
T Consensus 113 s~~~~----~~~~g~--~~i~ia~pi~~~~g~~~Gvl~~~i~l~~l~~~----------~~~~--~~gg---~~~l~d~~ 171 (217)
T 4dah_A 113 SDSYS----SRITGQ--PIFTICVPVLDSKRNVTDYLVAAIQIDYLKNL----------INLL--SPDV---YIEVVNQD 171 (217)
T ss_dssp CCCEE----CTTTCS--EEEEEEEEEECTTSCEEEEEEEEEEHHHHHHH----------HHHH--CTTS---CEEEEETT
T ss_pred eceEE----cCCCCC--EEEEEEEEEECCCCCEEEEEEEEEcHHHHHHH----------HHhc--CCCc---EEEEEcCC
Confidence 11111 123454 56667889999899999999988776553221 1111 1111 38999999
Q ss_pred CcEEeecHH
Q 002152 772 ACCSEWNAA 780 (959)
Q Consensus 772 g~i~~~N~a 780 (959)
|.+++.+..
T Consensus 172 G~ii~~~~~ 180 (217)
T 4dah_A 172 GKMIFASGQ 180 (217)
T ss_dssp SCEEEEESC
T ss_pred CCEEEeCCC
Confidence 998876543
No 178
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=84.07 E-value=0.42 Score=53.18 Aligned_cols=50 Identities=14% Similarity=0.043 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcc-cCcc
Q 002152 890 YAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDG-MDLR 950 (959)
Q Consensus 890 ~ak~~fLa~iSHElRnPL~~I~g~~~LL~~~~l~e~~~~~l~~i~~~~~rl~~LI~d-Ld~s 950 (959)
..|.+|+.+++|||++|++.|.+..+.+.. +.+..++++|.+++++ ++++
T Consensus 8 ~~k~d~l~~~~~el~~~~~~l~~~~~~~~~-----------~~i~~~~~~l~~l~~~l~~~~ 58 (379)
T 1b3q_A 8 IEKLDNLMDLMGELVIARSRILETLKKYNI-----------KELDESLSHLSRITLDLQNVV 58 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSCCC-----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999887665543 4466677777777777 5553
No 179
>2w1r_A Spovt, stage V sporulation protein T; regulatory GAF domain of spovt, transcription, transcription regulation, repressor, activator; 1.50A {Bacillus subtilis}
Probab=80.09 E-value=2.6 Score=38.49 Aligned_cols=120 Identities=14% Similarity=0.140 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCCccCCccCCCCchHHHHHHHHhCCEEEEecCCCCCcccc
Q 002152 234 LCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVI 313 (959)
Q Consensus 234 ~~~~~v~~vr~~~g~DRv~iY~F~~d~~G~viaE~~~~~~~s~lg~~~pa~dip~~ar~ly~~~~~r~i~d~~~~~~~l~ 313 (959)
.++..++-+.+.||+ =|.|- |. -.|+|=+-.+ -..|++ ..|++..++....+++.++.+... .++.
T Consensus 3 ~a~~~AeiI~~~~~~-aV~It--D~---~~ilA~~G~g-~~~~~~-----~~is~~~~~~i~~~k~~~~~~~~~--~~~~ 68 (123)
T 2w1r_A 3 FAKEYADALYDSLGH-SVLIC--DR---DVYIAVSGSS-KKDYLN-----KSISEMLERTMDQRSSVLESDAKS--VQLV 68 (123)
T ss_dssp HHHHHHHHHHHHHCS-EEEEE--CS---SBEEEEESSC-HHHHBT-----CBBCHHHHHHHHHCSCEEESSCEE--EESB
T ss_pred HHHHHHHHHHHHHCC-eEEEE--cC---ccEEEEEecC-hhhcCC-----CccCHHHHHHHHcCCEEEEcCCcc--cccc
Confidence 355677779999999 77764 22 2356554222 122333 466888889999999999866432 2111
Q ss_pred cccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEeecCCCCCCChhHHHHHHHHHHHHH
Q 002152 314 QSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFS 393 (959)
Q Consensus 314 ~~~~~~~~ldls~s~lRsvsp~h~~yl~nmgv~asl~v~i~~~~~~~~~LWGLi~~hh~~pr~~~~~~r~~~~~l~~~~s 393 (959)
. |. .. ...|.+++||+.+| +.=|.|.-. +..+.++.-++.+++-+|+.||
T Consensus 69 ~---------------------~~---~~-~~~s~ii~PI~~~g----~viG~i~l~-~~~~~~~~~~~~la~gla~lls 118 (123)
T 2w1r_A 69 N---------------------GI---DE-DMNSYTVGPIVANG----DPIGAVVIF-SKDQTMGEVEHKAVETAAGFLA 118 (123)
T ss_dssp T---------------------TC---EE-EESEEEEEEEEETT----EEEEEEEEE-ESSSCCCHHHHHHHHHHHHHHC
T ss_pred C---------------------CC---CC-CeeEEEEEEEEECC----EEEEEEEEE-EcCCCCCHHHHHHHHHHHHHHH
Confidence 0 00 01 24889999999999 999999988 6666689999999999999999
Q ss_pred HHHH
Q 002152 394 LQLY 397 (959)
Q Consensus 394 ~~l~ 397 (959)
.||+
T Consensus 119 ~Qme 122 (123)
T 2w1r_A 119 RQME 122 (123)
T ss_dssp ----
T ss_pred HHhc
Confidence 9985
No 180
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=75.71 E-value=53 Score=33.90 Aligned_cols=132 Identities=10% Similarity=0.024 Sum_probs=82.3
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEE-EEEecCCCCCCccCCccCCCCchHHHH
Q 002152 213 QKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEV-VSEIRRSDLEPYLGIHFPANDIPQAAR 291 (959)
Q Consensus 213 ~~~~~~~~~~l~~~~~~~l~~~~~~~v~~vr~~~g~DRv~iY~F~~d~~G~v-iaE~~~~~~~s~lg~~~pa~dip~~ar 291 (959)
...+...+.++.. +.+.+++. ..+..+.+.+|||++..+-..+...+.. -.+ .+ -.+..|....
T Consensus 21 ~~~l~~~l~~l~~--a~~~~~l~-~~l~~~~~~lGf~~~~y~~~~~~~~~~~~~~~-------~~-----i~~~yp~~W~ 85 (265)
T 3qp6_A 21 QWTLLEWIHMAGH--IETEGELK-AFLDNILSQAPSDRIILVLGRLNNQNQIQRME-------KV-----LNVSYPSDWL 85 (265)
T ss_dssp HHHHHHHHHHHTT--CCSHHHHH-HHHHHHTCSSTTCEEEEEEEEECTTSCEEEEE-------EE-----EESSCCHHHH
T ss_pred HHHHHHHHHHHhc--CCCHHHHH-HHHHHHHHHcCCCEEEEEeecCCCCccccccc-------ce-----eecCCcHHHH
Confidence 3445678889988 56888888 5677888899999998865544332211 000 11 1355678899
Q ss_pred HHHHhCCEEEEecCCCCCccccc-ccccCCccccccccccCCChhh---HHHHhhcCceeEEEEEE-EEcCCCCCceeEE
Q 002152 292 FLFKQNRVRMICDCHAIPVMVIQ-SKELKQPLCLVNSTLRSPHGCH---LQYMTNMGSIASLVMAV-IINSKDSMKLWGL 366 (959)
Q Consensus 292 ~ly~~~~~r~i~d~~~~~~~l~~-~~~~~~~ldls~s~lRsvsp~h---~~yl~nmgv~asl~v~i-~~~~~~~~~LWGL 366 (959)
+.|..+....+ . |++. .- ...|+.-+....+..++.. .+..+.+|++.-+++|+ .-.+ ...|+
T Consensus 86 ~~Y~~~~y~~~-----D--Pvv~~~~-~~~p~~W~~~~~~~~~~~~~~~~~~a~~~Gl~~G~tipi~~~~~----g~~g~ 153 (265)
T 3qp6_A 86 NQYSQENFAQH-----D--PIMRIHL-GQGPVIWEERFSRAKGSEEKRFIAEASSNGMGSGITFSAASDRN----NVGSI 153 (265)
T ss_dssp HHHHHTTGGGT-----C--GGGGCCT-TSSCEEHHHHHTTCCSHHHHHHHHHHHHTTCSSEEEEEEECSSS----SEEEE
T ss_pred HHHHHCcCccc-----C--hHHHHhc-CCCCEEECCcccccCChhHHHHHHHHHHcCCccceEEEEEEcCC----CCEEE
Confidence 99998665322 1 2232 12 3444444332222233333 44568999999999999 6554 78888
Q ss_pred EEeec
Q 002152 367 VVCHH 371 (959)
Q Consensus 367 i~~hh 371 (959)
++...
T Consensus 154 ls~~~ 158 (265)
T 3qp6_A 154 LSIGG 158 (265)
T ss_dssp EEEES
T ss_pred EEeec
Confidence 88776
No 181
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=73.69 E-value=10 Score=34.55 Aligned_cols=77 Identities=21% Similarity=0.078 Sum_probs=44.6
Q ss_pred CCeeeeCCCCcEEeecHHHHHHhCCCchhhcCCCcccccccccccccChhhHHHHHHHHHhhhcCCCcceeeEEEEccCC
Q 002152 763 PPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQG 842 (959)
Q Consensus 763 ~~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l~~~~~~~~~~~~e~~~~~~dG 842 (959)
+-++++|.+|..+.... .+.+|+++.. .+ .+..++.|+. +.. .. .|
T Consensus 51 ~~i~v~d~~G~~~a~~~----------~~~iG~~~~~-----------~~-------~~~~al~G~~-~~~---~~--~g 96 (131)
T 1p0z_A 51 TYITVGDASGQRLYHVN----------PDEIGKSMEG-----------GD-------SDEALINAKS-YVS---VR--KG 96 (131)
T ss_dssp SEEEEEETTSBEEECSS----------GGGTTSBCCS-----------SC-------CHHHHHHCCC-EEE---EE--EE
T ss_pred CEEEEEcCCCcEEEecC----------hhhCCCcccC-----------CC-------cHHHHhCCCe-EEE---EE--Ec
Confidence 35889999998776542 2346765321 01 1233445553 211 11 22
Q ss_pred cEEEEEEEEeeeeCCCCCEEEEEEEEeeccc
Q 002152 843 QFVEVALTASRRTDAEGKVIGCFCFMQILVP 873 (959)
Q Consensus 843 ~~~~v~~~~~pi~d~~G~i~g~v~i~~DITe 873 (959)
...+......|+++++|+++|++++..++..
T Consensus 97 ~~g~~~~~~~PV~~~~g~viGvv~vg~~l~~ 127 (131)
T 1p0z_A 97 SLGSSLRGKSPIQDATGKVIGIVSVGYTIEQ 127 (131)
T ss_dssp TTEEEEEEEEEEECTTCCEEEEEEEEEEGGG
T ss_pred cceeeEEEEEeEECCCCCEEEEEEEEEEhHH
Confidence 2223344445999989999999998877653
No 182
>3qp1_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 1.55A {Chromobacterium violaceum} PDB: 3qp2_A* 3qp4_A* 3qp8_A*
Probab=67.45 E-value=90 Score=29.96 Aligned_cols=144 Identities=9% Similarity=-0.019 Sum_probs=86.7
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCe--EEEEEecCCCCCCccCCccCCCCchHHHHHH
Q 002152 216 AVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHG--EVVSEIRRSDLEPYLGIHFPANDIPQAARFL 293 (959)
Q Consensus 216 ~~~~~~~l~~~~~~~l~~~~~~~v~~vr~~~g~DRv~iY~F~~d~~G--~viaE~~~~~~~s~lg~~~pa~dip~~ar~l 293 (959)
+...+.+++. +.+.+++.+. +..+.+.+|||++++..-.....| +.+.. +--+..|+...+.
T Consensus 19 l~~~~~~l~~--a~s~~~l~~~-l~~~~~~~Gf~~~~y~~~~~~~~~~~~~~~~-------------~~~~nyP~~W~~~ 82 (182)
T 3qp1_A 19 LLEWIHMAGH--IETENELKAF-LDQVLSQAPSERLLLALGRLNNQNQIQRLER-------------VLNVSYPSDWLDQ 82 (182)
T ss_dssp HHHHHHHHTT--CCSHHHHHHH-HHHHHTTSSCSEEEEEEEEECTTSCEEEEEE-------------EEESSSCHHHHHH
T ss_pred HHHHHHHHHh--cCCHHHHHHH-HHHHHHhcCCCeEEEEeecCCCcccccchhh-------------hhhcCCCHHHHHH
Confidence 3567888888 5588887765 567888999999987654332222 22100 1123457889999
Q ss_pred HHhCCEEEEecCCCCCccccc-ccccCCccccccccccCCChhhH---HHHhhcCceeEEEEEEEEc-CCCCCceeEEEE
Q 002152 294 FKQNRVRMICDCHAIPVMVIQ-SKELKQPLCLVNSTLRSPHGCHL---QYMTNMGSIASLVMAVIIN-SKDSMKLWGLVV 368 (959)
Q Consensus 294 y~~~~~r~i~d~~~~~~~l~~-~~~~~~~ldls~s~lRsvsp~h~---~yl~nmgv~asl~v~i~~~-~~~~~~LWGLi~ 368 (959)
|..+..-.| . |++. .- ...|+.=+....+..++-.. +..+.+|++.=+++||.-. + ...|+++
T Consensus 83 Y~~~~y~~~-----D--Pvv~~~~-~~~p~~W~~~~~~~~~~~~~~~~~~a~~~Gl~~G~tvp~~~~~~----g~~g~ls 150 (182)
T 3qp1_A 83 YMKENYAQH-----D--PILRIHL-GQGPVMWEERFNRAKGAEEKRFIAEATQNGMGSGITFSAASERN----NIGSILS 150 (182)
T ss_dssp HHHTTGGGT-----C--GGGGSCT-TSCCEEHHHHHHTCCSHHHHHHHHHHHHTTCSSEEEEEEEETTT----TEEEEEE
T ss_pred HHHCCCccc-----C--cchHhhc-CCCCEecCchhhcccChHHHHHHHHHHHcCCCceEEEEeecCCC----CcEEEEE
Confidence 998876333 2 3332 12 34444444333333344444 4557899999999999754 4 7899998
Q ss_pred eecCCCCCCChhHHHHHHHH
Q 002152 369 CHHTSPRYIPFPLRYACEFL 388 (959)
Q Consensus 369 ~hh~~pr~~~~~~r~~~~~l 388 (959)
.-...+ ..+..++..+.++
T Consensus 151 ~a~~~~-~~~~~~~~~l~~l 169 (182)
T 3qp1_A 151 IAGREP-GRNAALVAMLNCL 169 (182)
T ss_dssp EESSTG-GGCHHHHHHHHHH
T ss_pred EecCCc-cCCHHHHHHHHHH
Confidence 865543 2444444444333
No 183
>3lif_A Putative diguanylate cyclase (ggdef) with PAS/PAC; PDC fold, signaling protein; HET: CIT; 2.70A {Rhodopseudomonas palustris}
Probab=65.94 E-value=88 Score=31.34 Aligned_cols=57 Identities=7% Similarity=-0.012 Sum_probs=38.4
Q ss_pred EEEEEEEEeecCCCCEEEEEEEeecchhhHHHHHHHHHHHHHHHHHHHhcCCCC-CCeeeeCCCCcEEeecH
Q 002152 709 YILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLI-PPIFASDENACCSEWNA 779 (959)
Q Consensus 709 ~v~v~~~pi~d~~g~~~gvv~v~~DITerk~~E~~L~~se~~l~~i~e~~~~~i-~~I~~~D~~g~i~~~N~ 779 (959)
|+..-..|+++.+|++.|++++..++.. +..++......- .-++++|.+|.++.-.+
T Consensus 126 ~~i~~~~pi~~~~g~~~Gvl~~~i~l~~--------------l~~~~~~~~~~~~g~~~l~d~~G~ii~~~p 183 (254)
T 3lif_A 126 WVFVVSRRLETTDGKFFGVVVATIESEY--------------FSTFYKTFDLGPGGSISLLHSDGRLLIQWP 183 (254)
T ss_dssp EEEEEEEEEECTTCCEEEEEEEEECHHH--------------HHHHHTTSCCCTTCEEEEEETTSBEEEEET
T ss_pred EEEEEEeeeeCCCCCEeEEEEEEECHHH--------------HHHHHHhcCcCCCcEEEEEeCCCcEEEECC
Confidence 5666778999989999999988777532 223333332111 13788999999988744
No 184
>3e4o_A C4-dicarboxylate transport sensor protein DCTB; PAS domain, N-TERM helical dimerization domain, transferase; 2.30A {Sinorhizobium meliloti} PDB: 3e4p_A 3e4q_A 2zbb_A
Probab=64.48 E-value=37 Score=36.00 Aligned_cols=119 Identities=12% Similarity=0.079 Sum_probs=65.4
Q ss_pred HHHHHHHHhc-CccEEEEcCCCceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHHHHcCCCcceEEEEE
Q 002152 618 CEMVRLIETA-TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKL 696 (959)
Q Consensus 618 ~~l~~lie~~-~~~I~~~D~dg~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~~ 696 (959)
..+..+.+.. -..+++.|.+|+++..+.. -.+....|.++ .+++. +..+++++.. ..+.+
T Consensus 102 ~~L~~~~~~~~~~~i~v~d~~G~viass~~------~~p~~~~g~d~-------~~R~y----f~~Al~g~~~--~~~~~ 162 (305)
T 3e4o_A 102 RKLEALATSAEAAVIYLIDRSGVAVAASNW------QEPTSFVGNDY-------AFRDY----FRLAVRDGMA--EHFAM 162 (305)
T ss_dssp HHHHHHHHHSSCSEEEEEETTSBEEEETTT------TSTTCCTTCBC-------TTSHH----HHHHHHHSEE--EEEEE
T ss_pred HHHHHHHhccCccEEEEECCCCCEEEeCCC------cCcccccCCCc-------cccHH----HHHHHhcCCc--EEEEE
Confidence 3444444333 3468999999998865421 01111223322 13333 3444444322 11222
Q ss_pred EeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEeecchhhHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeeCCCCcEEe
Q 002152 697 RKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSE 776 (959)
Q Consensus 697 ~~~~~~~dG~~~~v~v~~~pi~d~~g~~~gvv~v~~DITerk~~E~~L~~se~~l~~i~e~~~~~i~~I~~~D~~g~i~~ 776 (959)
-...|+. ...-+.|+++ +|+++|++++..|+....+ .+ . .... .++++|.+|.|+.
T Consensus 163 ----~~~tg~~--~i~~a~PV~~-~G~viGVv~v~i~l~~l~~---~~-------~----~~~g---~~~l~D~~G~ii~ 218 (305)
T 3e4o_A 163 ----GTVSKRP--GLYISRRVDG-PGGPLGVIVAKLEFDGVEA---DW-------Q----ASGK---PAYVTDRRGIVLI 218 (305)
T ss_dssp ----CTTTCCE--EEEEEEEEEE-TTEEEEEEEEEECCHHHHH---HH-------H----HHTS---CEEEECTTCBEEE
T ss_pred ----ecCCCCE--EEEEEEEEcc-CCeEEEEEEEEEcHHHHHH---HH-------h----cCCc---eEEEEcCCCeEEE
Confidence 2233443 4456788886 5999999999988875332 11 1 1122 3899999999987
Q ss_pred ecH
Q 002152 777 WNA 779 (959)
Q Consensus 777 ~N~ 779 (959)
-+.
T Consensus 219 ~~~ 221 (305)
T 3e4o_A 219 TSL 221 (305)
T ss_dssp ESS
T ss_pred eCC
Confidence 654
No 185
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=63.55 E-value=19 Score=35.54 Aligned_cols=31 Identities=13% Similarity=0.055 Sum_probs=24.2
Q ss_pred cCCcEEEEEEEEeeeeCCCCCEEEEEEEEeecc
Q 002152 840 RQGQFVEVALTASRRTDAEGKVIGCFCFMQILV 872 (959)
Q Consensus 840 ~dG~~~~v~~~~~pi~d~~G~i~g~v~i~~DIT 872 (959)
.+|+ ++...+.|+++.+|++.|+++..-++.
T Consensus 120 ~~g~--~~i~ia~pi~~~~g~~~Gvl~~~i~l~ 150 (217)
T 4dah_A 120 ITGQ--PIFTICVPVLDSKRNVTDYLVAAIQID 150 (217)
T ss_dssp TTCS--EEEEEEEEEECTTSCEEEEEEEEEEHH
T ss_pred CCCC--EEEEEEEEEECCCCCEEEEEEEEEcHH
Confidence 4565 567778899998999999999766643
No 186
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=62.93 E-value=1e+02 Score=31.47 Aligned_cols=133 Identities=14% Similarity=0.078 Sum_probs=76.5
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCCccCCccCCCCchHHHHHHHHh
Q 002152 217 VSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296 (959)
Q Consensus 217 ~~~~~~l~~~~~~~l~~~~~~~v~~vr~~~g~DRv~iY~F~~d~~G~viaE~~~~~~~s~lg~~~pa~dip~~ar~ly~~ 296 (959)
..+.-+|-. +.++++++++..+.+++..+.|.|-+.-|++.+... +..-|.+.-......++..
T Consensus 106 ~~l~l~LL~--a~sl~~l~~~L~~~l~~~F~l~~v~L~L~~~~~~~~--------------~~~~~~~~~~~~~~~~l~~ 169 (252)
T 3e98_A 106 RRLVLDLLD--ATSLEDVVSTVEDSLRHEFQVPYVSLILFSDSSVSV--------------GRSVSSAEAHQAIGGLLSG 169 (252)
T ss_dssp HHHHHHHHH--CCSHHHHHHHHHHHHHHTSCCSEEEEEEECSSCCCS--------------SEEECHHHHHHHHHHHHTT
T ss_pred HHHHHHHhc--CCCHHHHHHHHHHHHHHHCCCCeEEEEEecCccccc--------------hhhccchhHHHHHHHHhCC
Confidence 344455555 679999999999999999999999999998765210 1000000001111111110
Q ss_pred CCEEEEecCCCCCcccccccccCCccccccccccCCChhhHHHH---hhcCceeEEEEEEEEcCCCCCceeEEEEeecCC
Q 002152 297 NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYM---TNMGSIASLVMAVIINSKDSMKLWGLVVCHHTS 373 (959)
Q Consensus 297 ~~~r~i~d~~~~~~~l~~~~~~~~~ldls~s~lRsvsp~h~~yl---~nmgv~asl~v~i~~~~~~~~~LWGLi~~hh~~ 373 (959)
++ |. .. .++ .+-....+ +.-.|+|...+|+- .+ .++|+|+.-...
T Consensus 170 ~~----------py--~G-------------~l~--~~e~~~lFg~~~a~~v~S~AllpL~-~~----~~~GlLalGS~D 217 (252)
T 3e98_A 170 GK----------TV--CG-------------VLR--PHELAFLFGESDRDEIGSAAVVSLS-FQ----GLHGVLAIGSPD 217 (252)
T ss_dssp CC----------CS--TT-------------CCC--HHHHHHHCCCTTGGGCCEEEEEEEE-SS----SEEEEEEEEESS
T ss_pred CC----------ce--EC-------------CCC--chHHHHhcCCCccccccceEEEEcC-CC----CceEEEEEcCCC
Confidence 00 00 00 000 01111222 12246788888883 34 699999998888
Q ss_pred CCCCCh-hHHHHHHHHHHHHHHHHH
Q 002152 374 PRYIPF-PLRYACEFLVQAFSLQLY 397 (959)
Q Consensus 374 pr~~~~-~~r~~~~~l~~~~s~~l~ 397 (959)
|.++.+ ---.++++|+.+++..|.
T Consensus 218 ~~rF~p~mgT~fL~~La~vvs~~L~ 242 (252)
T 3e98_A 218 PQHYKSSLGTLFLGYVAEVLARVLP 242 (252)
T ss_dssp TTGGGSTTTTHHHHHHHHHHHHHGG
T ss_pred hhhcCCCCcHHHHHHHHHHHHHHHH
Confidence 655544 446788888888877664
No 187
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=58.22 E-value=20 Score=35.25 Aligned_cols=45 Identities=16% Similarity=0.027 Sum_probs=35.3
Q ss_pred HHHHHHHHHhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 002152 894 KELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMT 942 (959)
Q Consensus 894 ~fLa~iSHElRnPL~~I~g~~~LL~~~~l~e~~~~~l~~i~~~~~rl~~ 942 (959)
+.+...+||+.|=|..|.|+++|=+ -++.++|+..+....+....
T Consensus 23 ~~LR~qrHdf~NkLqvI~GLlql~~----ydea~~yI~~~~~~~q~~~~ 67 (192)
T 1ixm_A 23 HLLGHSRHDWMNKLQLIKGNLSLQK----YDRVFEMIEEMVIDAKHESK 67 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHHHHHHHH
Confidence 5577889999999999999998743 36778888887766665554
No 188
>3by8_A Sensor protein DCUS; histidine kinase sensor domain, inner membrane, membrane, phosphoprotein, transferase, transmembrane; 1.45A {Escherichia coli} SCOP: d.110.6.1 PDB: 1ojg_A
Probab=57.75 E-value=29 Score=32.04 Aligned_cols=25 Identities=20% Similarity=0.054 Sum_probs=19.8
Q ss_pred EEEEeeeeCCCCCEEEEEEEEeecc
Q 002152 848 ALTASRRTDAEGKVIGCFCFMQILV 872 (959)
Q Consensus 848 ~~~~~pi~d~~G~i~g~v~i~~DIT 872 (959)
.....|+++.+|+++|++++..++.
T Consensus 107 ~~~~~PV~~~~g~viGvv~vg~~~~ 131 (142)
T 3by8_A 107 LRVFTPIYDENHKQIGVVAIGLELS 131 (142)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEHH
T ss_pred EEEEEeEEcCCCCEEEEEEEeEEHH
Confidence 3344599988899999999888755
No 189
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=56.44 E-value=33 Score=31.03 Aligned_cols=77 Identities=19% Similarity=0.132 Sum_probs=43.9
Q ss_pred ccEEEEcCCCceehhcHHHHHHhCCCcccccCCCccccccCCCchHHHHHHHHHHHcCCCcceEEEEEEeeeeccCCcEE
Q 002152 629 APIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708 (959)
Q Consensus 629 ~~I~~~D~dg~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~~~~~~~~~dG~~~ 708 (959)
+.++++|.+|..+.... .+.+|+++. . .+ .+..++.|+.... .. ...+.
T Consensus 51 ~~i~v~d~~G~~~a~~~----------~~~iG~~~~-~---~~-------~~~~al~G~~~~~----~~----~g~~g-- 99 (131)
T 1p0z_A 51 TYITVGDASGQRLYHVN----------PDEIGKSME-G---GD-------SDEALINAKSYVS----VR----KGSLG-- 99 (131)
T ss_dssp SEEEEEETTSBEEECSS----------GGGTTSBCC-S---SC-------CHHHHHHCCCEEE----EE----EETTE--
T ss_pred CEEEEEcCCCcEEEecC----------hhhCCCccc-C---CC-------cHHHHhCCCeEEE----EE----Eccce--
Confidence 47888999997765432 234676543 1 11 1233445553211 11 11122
Q ss_pred EEEEEEEEeecCCCCEEEEEEEeecchh
Q 002152 709 YILVNACTSRDYKNNVKGVCFVGQDITH 736 (959)
Q Consensus 709 ~v~v~~~pi~d~~g~~~gvv~v~~DITe 736 (959)
.......|+++.+|+++|++.+..++..
T Consensus 100 ~~~~~~~PV~~~~g~viGvv~vg~~l~~ 127 (131)
T 1p0z_A 100 SSLRGKSPIQDATGKVIGIVSVGYTIEQ 127 (131)
T ss_dssp EEEEEEEEEECTTCCEEEEEEEEEEGGG
T ss_pred eeEEEEEeEECCCCCEEEEEEEEEEhHH
Confidence 2333345999888999999999877654
No 190
>4eu0_A PELD; C-DI-GMP, signaling protein; HET: C2E; 1.70A {Pseudomonas aeruginosa} PDB: 4euv_A* 4etz_A* 4etx_A 4dmz_A 4dn0_A*
Probab=53.97 E-value=1.4e+02 Score=31.45 Aligned_cols=125 Identities=11% Similarity=0.061 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeecCCCC--eEEEEEecCCCCCCccCCccCCCCchHHHHHHHHhCCEEEEecCCCC
Q 002152 231 IGLLCDTVVEDVQKLTGYDRVMLYNFHDDDH--GEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAI 308 (959)
Q Consensus 231 l~~~~~~~v~~vr~~~g~DRv~iY~F~~d~~--G~viaE~~~~~~~s~lg~~~pa~dip~~ar~ly~~~~~r~i~d~~~~ 308 (959)
+..+.+...+-+.+.-++.+.-||+.+.+.+ -+.+|- +|--+|-+-=-.=.|.....+.+..|.+...
T Consensus 24 l~~~a~~lL~llaq~~~l~~Aaly~~~~~~~~~~~p~A~---------iG~~~~l~~~DpLVr~alet~~l~~v~~~~~- 93 (298)
T 4eu0_A 24 LDALAETVLALLAQYGSLRIAGLYRVRYDRTPEPQPLAT---------LGEMPALDADDLLVRTCLERGELVSVRQELL- 93 (298)
T ss_dssp HHHTHHHHHHHHHHHHTCSEEEEEEBCTTSCBCSSCSEE---------ESSCCCCCSCCHHHHHHHHHTSCEECCC----
T ss_pred ChHHHHHHHHHHHHhcCeeEEEEEEEECCcccCCceeee---------cCCCCCCCCCCHHHHHHHHhCCceeechhhh-
Confidence 6777888888999999999999999876643 222322 2322211100122333333444444433210
Q ss_pred CcccccccccCCccccccccccCCChhhHHHHhhc-CceeEEEEEEE-EcCCCCCceeEEEEeecCCCCCCChhHHHHHH
Q 002152 309 PVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNM-GSIASLVMAVI-INSKDSMKLWGLVVCHHTSPRYIPFPLRYACE 386 (959)
Q Consensus 309 ~~~l~~~~~~~~~ldls~s~lRsvsp~h~~yl~nm-gv~asl~v~i~-~~~~~~~~LWGLi~~hh~~pr~~~~~~r~~~~ 386 (959)
+=.+.+ +.+.-+++|++ .+| ++||+|+.+..-+..+..+.-..+.
T Consensus 94 -----------------------------~~~~~~~~sryL~viPLld~~g----~i~Gvl~V~~mpF~a~~~~~LqlL~ 140 (298)
T 4eu0_A 94 -----------------------------ERGEQRAHSAAAVCVPLVDTDG----RILALLAVEQMPFFVFNERTFSLLA 140 (298)
T ss_dssp ---------------------------------------CCEEEEEECTTS----CEEEEEEEEECCGGGCSHHHHHHHH
T ss_pred -----------------------------hccccccccceEEEEEeecCCC----cEEEEEEEecCCccccCHhHHHHHH
Confidence 000011 45777899998 666 9999999999988888888877777
Q ss_pred HHHHHHHHHHHH
Q 002152 387 FLVQAFSLQLYM 398 (959)
Q Consensus 387 ~l~~~~s~~l~~ 398 (959)
.|+...+..+..
T Consensus 141 VL~g~~ad~i~~ 152 (298)
T 4eu0_A 141 ILAGHIADLLQS 152 (298)
T ss_dssp HHHHHHHHHHGG
T ss_pred HHHHHHHHHHHh
Confidence 777777777643
No 191
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=51.44 E-value=1.8e+02 Score=29.07 Aligned_cols=119 Identities=9% Similarity=0.039 Sum_probs=65.8
Q ss_pred HHhhcCCCCC-HHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCCccCCccCCCCchHHHHHHHHhCCE
Q 002152 221 SRLQALPGGD-IGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRV 299 (959)
Q Consensus 221 ~~l~~~~~~~-l~~~~~~~v~~vr~~~g~DRv~iY~F~~d~~G~viaE~~~~~~~s~lg~~~pa~dip~~ar~ly~~~~~ 299 (959)
.++.. +.+ .+++.+.. +.+.+.+|||++.++.+.. . .+ + -.+..|....+.|..+..
T Consensus 11 ~~l~~--a~~~~~~l~~~l-~~~~~~~gf~~~~y~~~~~--~-~~-----------~-----~~~~~p~~w~~~Y~~~~y 68 (236)
T 2q0o_A 11 IDMLE--AAQDGHMIKIAL-RSFAHSCGYDRFAYLQKDG--T-QV-----------R-----TFHSYPGPWESIYLGSDY 68 (236)
T ss_dssp HHHHH--HCCSHHHHHHHH-HHHHHHHTCCEEEEEEEET--T-EE-----------E-----EEECSCHHHHHHHHHTTG
T ss_pred HHHHH--ccCcHHHHHHHH-HHHHHHhCCCeEEEEecCC--C-ce-----------E-----EEeCCCHHHHHHHHHCCC
Confidence 55555 346 77777765 5566669999999875211 0 11 1 123446777788876654
Q ss_pred EEEecCCCCCccccc-ccccCCccccccccccC-CCh---hhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEeecC
Q 002152 300 RMICDCHAIPVMVIQ-SKELKQPLCLVNSTLRS-PHG---CHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHT 372 (959)
Q Consensus 300 r~i~d~~~~~~~l~~-~~~~~~~ldls~s~lRs-vsp---~h~~yl~nmgv~asl~v~i~~~~~~~~~LWGLi~~hh~ 372 (959)
..+ . |++. .-....|..-+....+. .++ ...++.+.+|+..-+++|+.-.+ ..+|+++....
T Consensus 69 ~~~-----D--Pv~~~~~~~~~p~~w~~~~~~~~~~~~~~~~~~~a~~~gl~~G~~~p~~~~~----~~~g~ls~~~~ 135 (236)
T 2q0o_A 69 FNI-----D--PVLAEAKRRRDVFFWTADAWPARGSSPLRRFRDEAISHGIRCGVTIPVEGSY----GSAMMLTFASP 135 (236)
T ss_dssp GGT-----C--HHHHHHHHCCSCEEEESTTSCCSSCCHHHHHHHHHHHTTCCEEEEEEEECGG----GCEEEEEEEES
T ss_pred ccc-----C--HHHHHHhCCCCCEEecCcccccccCHHHHHHHHHHHHcCCCceEEEEEEcCC----CCeEEEEEecC
Confidence 211 1 2221 01112222222222211 112 23456779999999999998655 78898876544
No 192
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=50.18 E-value=6.9 Score=44.81 Aligned_cols=40 Identities=10% Similarity=0.007 Sum_probs=33.9
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEeec
Q 002152 216 AVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFH 257 (959)
Q Consensus 216 ~~~~~~~l~~~~~~~l~~~~~~~v~~vr~~~g~DRv~iY~F~ 257 (959)
...++.+|.+ +.++.+++.+.+.++++++++|+|.||.++
T Consensus 322 ~~~l~~~l~~--~~~~~~~l~~~~~~l~~ll~adg~al~~~~ 361 (505)
T 3nhq_A 322 RLALARRARD--ADDLFGALAHPDDGIAALIPCDGALVMLGG 361 (505)
T ss_dssp HHHHHHHHHH--HCCHHHHHHCTTTSHHHHTTCSEEEEEETT
T ss_pred HHHHHHHHhh--cCCHHHHHHHhhHHHHHHhCCCeEEEEECC
Confidence 3445666766 568999999999999999999999999986
No 193
>4ew7_A Conjugative transfer: regulation; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology; 1.67A {Salmonella enterica subsp}
Probab=45.20 E-value=1.5e+02 Score=25.55 Aligned_cols=40 Identities=15% Similarity=0.106 Sum_probs=33.5
Q ss_pred HHHHHHHhcCccEEEEcCCCceehhcHHHHHHhCCCcccc
Q 002152 619 EMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEA 658 (959)
Q Consensus 619 ~l~~lie~~~~~I~~~D~dg~iv~~N~~~~~l~G~~~eel 658 (959)
..+.+..++|+++++-+....|+|.|.++.++|-.+..-+
T Consensus 21 ~iq~iY~nSPVpVCVRNq~RkilYaN~aF~elF~Ked~~~ 60 (127)
T 4ew7_A 21 SIQDIYKNSPVPVCVRNQSRKIIYANGAFIELFSKEDQPL 60 (127)
T ss_dssp HHHHHHTTCSSCEEEECTTSCEEEECHHHHHHTTSCCCGG
T ss_pred hHHhhhcCCCccEEEecccceEEEecchHHHHhhcccCcc
Confidence 3467889999999999999999999999999976544333
No 194
>3by8_A Sensor protein DCUS; histidine kinase sensor domain, inner membrane, membrane, phosphoprotein, transferase, transmembrane; 1.45A {Escherichia coli} SCOP: d.110.6.1 PDB: 1ojg_A
Probab=37.98 E-value=39 Score=31.07 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=19.8
Q ss_pred EEEeecCCCCEEEEEEEeecchhh
Q 002152 714 ACTSRDYKNNVKGVCFVGQDITHE 737 (959)
Q Consensus 714 ~~pi~d~~g~~~gvv~v~~DITer 737 (959)
..|+++.+|+++|++.+..++...
T Consensus 110 ~~PV~~~~g~viGvv~vg~~~~~~ 133 (142)
T 3by8_A 110 FTPIYDENHKQIGVVAIGLELSRV 133 (142)
T ss_dssp EEEEECTTSCEEEEEEEEEEHHHH
T ss_pred EEeEEcCCCCEEEEEEEeEEHHHH
Confidence 449998889999999998887654
No 195
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=37.96 E-value=2.3e+02 Score=28.61 Aligned_cols=48 Identities=19% Similarity=0.082 Sum_probs=34.0
Q ss_pred eeeeC-CCCcEEeecHHHHHHhCCCchhh----cCCCcccccccccccccChhhHHH
Q 002152 765 IFASD-ENACCSEWNAAMEKVTGWMRHEV----IGKMLPREIFGNFCRMKGQDMLTK 816 (959)
Q Consensus 765 I~~~D-~~g~i~~~N~a~~~l~G~~~eev----iGk~~~~~i~~~~~~l~~~e~~~~ 816 (959)
++++| ..+++.+++..+..++||+++++ +.......++. ..+|+|...
T Consensus 46 ~~l~D~~~~~~~~~s~~~~~llG~~~~~~~~~~~~~~~~~~ll~----~i~p~D~~~ 98 (258)
T 3clo_A 46 AVISDLSNRKSYVTVHPWANFLGLTPEEAALSVIDSMDEDCIYR----RIHPEDLVE 98 (258)
T ss_dssp EEEEETTTTEEEEEECTTCGGGCCCHHHHHCCEESSSSCHHHHT----TBCHHHHHH
T ss_pred EEEEEcCCCeEEEEeCCHHHHhCCCcccchHHHHhhhHHHHHHH----hCChHHHHH
Confidence 78888 67889999999999999999987 43322222332 347777653
No 196
>3lif_A Putative diguanylate cyclase (ggdef) with PAS/PAC; PDC fold, signaling protein; HET: CIT; 2.70A {Rhodopseudomonas palustris}
Probab=33.78 E-value=1.6e+02 Score=29.33 Aligned_cols=29 Identities=21% Similarity=0.215 Sum_probs=22.6
Q ss_pred CCcEEEEEEEEeeeeCCCCCEEEEEEEEeec
Q 002152 841 QGQFVEVALTASRRTDAEGKVIGCFCFMQIL 871 (959)
Q Consensus 841 dG~~~~v~~~~~pi~d~~G~i~g~v~i~~DI 871 (959)
.|+ |+...+.|+++.+|++.|++++..++
T Consensus 123 ~g~--~~i~~~~pi~~~~g~~~Gvl~~~i~l 151 (254)
T 3lif_A 123 SGV--WVFVVSRRLETTDGKFFGVVVATIES 151 (254)
T ss_dssp TCC--EEEEEEEEEECTTCCEEEEEEEEECH
T ss_pred CCc--EEEEEEeeeeCCCCCEeEEEEEEECH
Confidence 454 56677789999999999999876654
No 197
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=33.73 E-value=3.3e+02 Score=26.92 Aligned_cols=119 Identities=8% Similarity=0.108 Sum_probs=67.3
Q ss_pred HHhhcCCCCC-HHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCCccCCccCCCCchHHHHHHHHhCCE
Q 002152 221 SRLQALPGGD-IGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRV 299 (959)
Q Consensus 221 ~~l~~~~~~~-l~~~~~~~v~~vr~~~g~DRv~iY~F~~d~~G~viaE~~~~~~~s~lg~~~pa~dip~~ar~ly~~~~~ 299 (959)
.++.. +.+ .+++.+. +..+.+.+|||++.++.+.. ... + -.+..|....+.|..+..
T Consensus 9 ~~l~~--a~~~~~~l~~~-l~~~~~~~gf~~~~y~~~~~--~~~------------~-----~~~~~p~~w~~~Y~~~~y 66 (234)
T 1l3l_A 9 TDLAA--IEGDECILKTG-LADIADHFGFTGYAYLHIQH--RHI------------T-----AVTNYHRQWQSTYFDKKF 66 (234)
T ss_dssp HHHTT--CCSCHHHHHHH-HHHHHHHTTCSEEEEEEEET--TEE------------E-----EEECSCHHHHHHHHHTTG
T ss_pred HHHHH--ccCcHHHHHHH-HHHHHHHcCCCeEEEEecCC--CCe------------E-----EEcCCCHHHHHHHHHCCC
Confidence 66666 446 7777764 55677899999999884211 010 1 123456778888887653
Q ss_pred EEEecCCCCCcccccc-cccCCccccccccccC-C---ChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEeecC
Q 002152 300 RMICDCHAIPVMVIQS-KELKQPLCLVNSTLRS-P---HGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHT 372 (959)
Q Consensus 300 r~i~d~~~~~~~l~~~-~~~~~~ldls~s~lRs-v---sp~h~~yl~nmgv~asl~v~i~~~~~~~~~LWGLi~~hh~ 372 (959)
..+ . |++.. -....|+.-+...... . .+...++.+.+|+..-+++|+.-.+ ..+|+++.-..
T Consensus 67 ~~~-----D--Pv~~~~~~~~~p~~w~~~~~~~~~~~~~~~~~~~a~~~gl~~G~~~p~~~~~----~~~g~ls~~~~ 133 (234)
T 1l3l_A 67 EAL-----D--PVVKRARSRKHIFTWSGEHERPTLSKDERAFYDHASDFGIRSGITIPIKTAN----GFMSMFTMASD 133 (234)
T ss_dssp GGT-----C--HHHHHHHHCCSCEEEEHHHHTTTCCHHHHHHHHHHHTTTCSEEEEEEEECGG----GCEEEEEEEES
T ss_pred ccc-----C--cHHHHhhCCCCCeeeCccccccccchHHHHHHHHHHHcCCCccEEEEEecCC----CCEEEEEEecC
Confidence 211 1 22210 1112233222222211 1 1223445679999999999998665 78898876543
No 198
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=32.24 E-value=20 Score=38.44 Aligned_cols=46 Identities=24% Similarity=0.385 Sum_probs=37.7
Q ss_pred cEEEEcCCCceehhcHHHHHHhCCCcccccCCCccccccCCCchHHH
Q 002152 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAV 676 (959)
Q Consensus 630 ~I~~~D~dg~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~ 676 (959)
.++++|.+++|+.++..+.+++|.++++++|+++. +++.++....+
T Consensus 31 ~Ll~~~~~~~I~~~S~N~~~~lg~~~~~~lG~~l~-~ll~~~~~~~l 76 (327)
T 4e04_A 31 LLLALAADMTIVAGSDNLPELTGLAIGALIGRSAA-DVFDSETHNRL 76 (327)
T ss_dssp EEEEECTTCBEEEEETTHHHHHSCCHHHHTTCBHH-HHBCHHHHHHH
T ss_pred EEEEEcCCCeEEEEcccHHHHhCCChHhhcCCCHH-HHcCHHHHHHH
Confidence 35667888899999999999999999999999998 77765544433
No 199
>3e4o_A C4-dicarboxylate transport sensor protein DCTB; PAS domain, N-TERM helical dimerization domain, transferase; 2.30A {Sinorhizobium meliloti} PDB: 3e4p_A 3e4q_A 2zbb_A
Probab=29.50 E-value=1.6e+02 Score=30.88 Aligned_cols=81 Identities=10% Similarity=0.062 Sum_probs=45.4
Q ss_pred CCeeeeCCCCcEEeecHHHHHHhCCCchhhcCCCcccccccccccccChhhHHHHHHHHHhhhcCCCcceeeEEEEccCC
Q 002152 763 PPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQG 842 (959)
Q Consensus 763 ~~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l~~~~~~~~~~~~e~~~~~~dG 842 (959)
..+++.|.+|+++..+.. -.+..+.|.+.. +++ .+++++.++.... +.+-...|
T Consensus 114 ~~i~v~d~~G~viass~~------~~p~~~~g~d~~--------------~R~----yf~~Al~g~~~~~--~~~~~~tg 167 (305)
T 3e4o_A 114 AVIYLIDRSGVAVAASNW------QEPTSFVGNDYA--------------FRD----YFRLAVRDGMAEH--FAMGTVSK 167 (305)
T ss_dssp SEEEEEETTSBEEEETTT------TSTTCCTTCBCT--------------TSH----HHHHHHHHSEEEE--EEECTTTC
T ss_pred cEEEEECCCCCEEEeCCC------cCcccccCCCcc--------------ccH----HHHHHHhcCCcEE--EEEecCCC
Confidence 468999999999876532 011222343311 112 2344444432221 22333344
Q ss_pred cEEEEEEEEeeeeCCCCCEEEEEEEEeecc
Q 002152 843 QFVEVALTASRRTDAEGKVIGCFCFMQILV 872 (959)
Q Consensus 843 ~~~~v~~~~~pi~d~~G~i~g~v~i~~DIT 872 (959)
+ ++...+.|+++ +|+++|++++..|+.
T Consensus 168 ~--~~i~~a~PV~~-~G~viGVv~v~i~l~ 194 (305)
T 3e4o_A 168 R--PGLYISRRVDG-PGGPLGVIVAKLEFD 194 (305)
T ss_dssp C--EEEEEEEEEEE-TTEEEEEEEEEECCH
T ss_pred C--EEEEEEEEEcc-CCeEEEEEEEEEcHH
Confidence 4 44556788886 599999999877765
No 200
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=22.65 E-value=36 Score=36.59 Aligned_cols=44 Identities=20% Similarity=0.303 Sum_probs=36.5
Q ss_pred EEEEcC-CCceehhcHHHHHHhCCCcccccCCCccccccCCCchHHH
Q 002152 631 IFGVDS-SGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAV 676 (959)
Q Consensus 631 I~~~D~-dg~iv~~N~~~~~l~G~~~eeliGk~~~~~l~~~~~~~~~ 676 (959)
++++|. +++|+.++..+.+++|.++++++|+++. +++.+ ....+
T Consensus 55 LL~l~~~~~~I~~~S~N~~~~lg~~~~~llG~~l~-~ll~~-~~~~l 99 (343)
T 3s7o_A 55 LLTADGHSGEVLQMSLNAATFLGQEPTVLRGQTLA-ALLPE-QWPAL 99 (343)
T ss_dssp EEEEETTTCBEEEEETTHHHHHSSCHHHHTTCBHH-HHSTT-THHHH
T ss_pred EEEEECCCCEEEEEcccHHHHhCcChHHHcCCCHH-HHHhH-HHHHH
Confidence 455675 7899999999999999999999999998 77776 55433
No 201
>2hl0_A Threonyl-tRNA synthetase; translation, editing, aminoacyl-tRNA synthetase, enzyme mechanism, enantioselectivity, ligase; HET: A3S; 1.86A {Pyrococcus abyssi} PDB: 2hkz_A 1y2q_A* 2hl2_A* 3pd2_A* 2hl1_A* 3pd3_A* 3pd4_A* 3pd5_A*
Probab=22.63 E-value=83 Score=29.03 Aligned_cols=28 Identities=18% Similarity=0.375 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHHHHHH---hCCCeEEEEeec
Q 002152 230 DIGLLCDTVVEDVQKL---TGYDRVMLYNFH 257 (959)
Q Consensus 230 ~l~~~~~~~v~~vr~~---~g~DRv~iY~F~ 257 (959)
+.+.+...+|++|..+ +|++|||||-|.
T Consensus 52 ~~~~vv~~av~eI~~~a~kv~~~~ivlYPyA 82 (143)
T 2hl0_A 52 NPEEVSLKAIEEISKVAEQVKAENVFVYPFA 82 (143)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCCEEEEEECG
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 3466677777777666 599999999885
No 202
>3lid_A Putative sensory BOX/ggdef family protein; PDC fold, signaling protein; 1.76A {Vibrio parahaemolyticus} PDB: 3lie_A 2p7j_A*
Probab=21.90 E-value=77 Score=33.16 Aligned_cols=106 Identities=6% Similarity=-0.000 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhcCCCCCCeeeeCCCCcEE-eecHHHHHHhCCCchhhcCCCcccccccccccccChhhHHHHHHHHHhhh
Q 002152 747 LQGDYEAIIQSVNPLIPPIFASDENACCS-EWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGI 825 (959)
Q Consensus 747 se~~l~~i~e~~~~~i~~I~~~D~~g~i~-~~N~a~~~l~G~~~eeviGk~~~~~i~~~~~~l~~~e~~~~~~~~l~~~~ 825 (959)
.+..|..+.++-+.. ..|.++|.+|+.+ .+|......+-.+..++ .+..+++-|...+. .
T Consensus 65 l~~~~~~~~~~~~~~-~~i~lid~~G~~i~~~~~~~~~~~~~p~~~l----------------~n~~~R~yf~~a~~--~ 125 (295)
T 3lid_A 65 LENMWSSVARNQKLY-KQIRFLDTSGTEKVRIKYDFKTSIAGPSLIL----------------RDKSAREYFKYAQS--L 125 (295)
T ss_dssp HHHHHHHHHHHHCCE-EEEEEEETTSBEEEEEEEETTTTEEEECSCC----------------CBCTTSHHHHHHHH--S
T ss_pred HHHHHHHHHhcCccc-cEEEEECCCCCEEEEEEccCCceeEcCcccc----------------ccchhhHHHHHHhc--C
Confidence 345566676654433 4688999999754 34432111110111111 11222333333322 1
Q ss_pred cCCCcceeeEEEEccCC----cEEEEEEEEeeeeCCCCCEEEEEEEEeecc
Q 002152 826 TGQGTENFPFGFFNRQG----QFVEVALTASRRTDAEGKVIGCFCFMQILV 872 (959)
Q Consensus 826 ~~~~~~~~e~~~~~~dG----~~~~v~~~~~pi~d~~G~i~g~v~i~~DIT 872 (959)
.++..+......-..+| ...++...+.|+. .+|+++|++++--|..
T Consensus 126 ~~~~~~~s~~~~~~~~g~~~~~~~p~i~~a~pV~-~~g~~~GVlv~~i~l~ 175 (295)
T 3lid_A 126 DNEQISAWGIELERDKGELVYPLSPSLRILMPIS-VNDVRQGYLVLNVDIE 175 (295)
T ss_dssp CTTCCEECCCEECEETTEECSSCCEEEEEEEEEE-ETTEEEEEEEEEEEHH
T ss_pred CCCcEEEeCceecccCCcccCCCCCEEEEEEEEc-cCCeEEEEEEEEecHH
Confidence 22333333333333344 2357777888997 6899999999877754
No 203
>3lid_A Putative sensory BOX/ggdef family protein; PDC fold, signaling protein; 1.76A {Vibrio parahaemolyticus} PDB: 3lie_A 2p7j_A*
Probab=21.42 E-value=2e+02 Score=29.93 Aligned_cols=57 Identities=11% Similarity=-0.151 Sum_probs=36.0
Q ss_pred EEEEEEEEEeecCCCCEEEEEEEeecchhhHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeeCCCCcEEeecH
Q 002152 708 VYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNA 779 (959)
Q Consensus 708 ~~v~v~~~pi~d~~g~~~gvv~v~~DITerk~~E~~L~~se~~l~~i~e~~~~~i~~I~~~D~~g~i~~~N~ 779 (959)
.++..-+.|+. .+|+++|++++-.|+..- .+.+. ...... ..++++|.+|.++.-+.
T Consensus 149 ~p~i~~a~pV~-~~g~~~GVlv~~i~l~~l----------~~~~~---~~~~~~-~~~~l~d~~G~~l~~~~ 205 (295)
T 3lid_A 149 SPSLRILMPIS-VNDVRQGYLVLNVDIEYL----------SSLLN---YSPVRD-FHIELVKHKGFYIASPD 205 (295)
T ss_dssp CEEEEEEEEEE-ETTEEEEEEEEEEEHHHH----------HHHHS---EETTTT-EECEEEETTSBEEECSC
T ss_pred CCEEEEEEEEc-cCCeEEEEEEEEecHHHH----------HHHHh---hcccCC-CcEEEEcCCCCEEecCC
Confidence 45666678886 689999999887776442 11121 111111 24789999999886543
No 204
>4ew7_A Conjugative transfer: regulation; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology; 1.67A {Salmonella enterica subsp}
Probab=20.41 E-value=4.1e+02 Score=22.85 Aligned_cols=36 Identities=11% Similarity=0.055 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCCCCCCeeeeCCCCcEEeecHHHHHHhC
Q 002152 748 QGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTG 786 (959)
Q Consensus 748 e~~l~~i~e~~~~~i~~I~~~D~~g~i~~~N~a~~~l~G 786 (959)
--..+.+..++|. ++.+-+...+|+|.|.+|.++|-
T Consensus 19 iL~iq~iY~nSPV---pVCVRNq~RkilYaN~aF~elF~ 54 (127)
T 4ew7_A 19 ILSIQDIYKNSPV---PVCVRNQSRKIIYANGAFIELFS 54 (127)
T ss_dssp HHHHHHHHTTCSS---CEEEECTTSCEEEECHHHHHHTT
T ss_pred HHhHHhhhcCCCc---cEEEecccceEEEecchHHHHhh
Confidence 3345667777764 59999999999999999999974
Done!